Query 000304
Match_columns 1697
No_of_seqs 260 out of 434
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 03:35:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000304.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000304hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1878 Nuclear receptor coreg 100.0 1.1E-84 2.3E-89 795.4 27.3 1338 5-1512 127-1625(1672)
2 KOG1878 Nuclear receptor coreg 100.0 1.2E-40 2.7E-45 410.1 2.9 230 524-778 43-281 (1672)
3 KOG1194 Predicted DNA-binding 99.6 2.2E-15 4.7E-20 174.2 6.4 232 718-999 183-431 (534)
4 PF00249 Myb_DNA-binding: Myb- 99.0 4.5E-10 9.8E-15 95.7 6.1 45 939-983 2-48 (48)
5 KOG4329 DNA-binding protein [G 99.0 3.8E-10 8.2E-15 129.2 5.1 61 718-778 273-334 (445)
6 TIGR01557 myb_SHAQKYF myb-like 98.8 8.1E-09 1.8E-13 92.8 6.0 47 939-985 4-56 (57)
7 KOG4167 Predicted DNA-binding 98.8 5.7E-09 1.2E-13 126.8 4.9 54 719-772 616-669 (907)
8 smart00717 SANT SANT SWI3, AD 98.6 6.9E-08 1.5E-12 78.8 5.9 46 939-984 2-48 (49)
9 cd00167 SANT 'SWI3, ADA2, N-Co 98.6 1E-07 2.3E-12 76.9 5.9 43 940-982 1-44 (45)
10 KOG4167 Predicted DNA-binding 98.5 1.2E-07 2.6E-12 115.7 6.3 53 937-989 618-670 (907)
11 PF00249 Myb_DNA-binding: Myb- 98.4 3.2E-07 6.9E-12 78.4 5.3 45 723-767 2-48 (48)
12 smart00717 SANT SANT SWI3, AD 98.2 1.8E-06 3.9E-11 70.5 5.6 46 723-768 2-48 (49)
13 PF13921 Myb_DNA-bind_6: Myb-l 98.2 3.2E-06 6.9E-11 74.6 5.8 41 941-981 1-41 (60)
14 cd00167 SANT 'SWI3, ADA2, N-Co 98.0 8.4E-06 1.8E-10 65.8 5.3 43 724-766 1-44 (45)
15 KOG3554 Histone deacetylase co 97.7 2.2E-05 4.8E-10 92.9 3.4 59 719-777 282-341 (693)
16 KOG4329 DNA-binding protein [G 97.5 0.00033 7.1E-09 81.9 9.0 55 939-993 278-333 (445)
17 COG5259 RSC8 RSC chromatin rem 97.4 0.00013 2.7E-09 87.2 4.9 42 939-980 280-321 (531)
18 KOG1194 Predicted DNA-binding 97.4 0.00014 3.1E-09 86.5 4.2 58 938-995 187-244 (534)
19 KOG0457 Histone acetyltransfer 97.3 0.0003 6.4E-09 83.8 6.0 48 938-985 72-120 (438)
20 PF13921 Myb_DNA-bind_6: Myb-l 97.1 0.00058 1.3E-08 60.5 4.7 41 725-765 1-41 (60)
21 PLN03212 Transcription repress 97.0 0.0019 4E-08 73.1 8.5 47 939-985 79-125 (249)
22 KOG1279 Chromatin remodeling f 96.9 0.0011 2.3E-08 81.2 5.7 44 937-980 252-295 (506)
23 PLN03091 hypothetical protein; 96.6 0.0053 1.2E-07 73.9 8.5 45 938-982 67-111 (459)
24 PLN03212 Transcription repress 96.4 0.0048 1.1E-07 69.9 6.0 47 937-983 24-72 (249)
25 KOG4468 Polycomb-group transcr 96.1 0.0051 1.1E-07 75.5 4.5 50 938-987 88-147 (782)
26 TIGR01557 myb_SHAQKYF myb-like 95.6 0.023 4.9E-07 52.0 5.3 43 722-764 3-51 (57)
27 PLN03091 hypothetical protein; 95.6 0.015 3.2E-07 70.3 5.1 46 938-983 14-61 (459)
28 KOG3554 Histone deacetylase co 95.4 0.013 2.8E-07 70.5 3.8 51 927-983 280-331 (693)
29 COG5118 BDP1 Transcription ini 95.0 0.033 7.2E-07 66.0 5.7 47 937-983 364-410 (507)
30 COG5114 Histone acetyltransfer 94.8 0.048 1E-06 63.6 6.2 47 938-984 63-110 (432)
31 COG5259 RSC8 RSC chromatin rem 92.8 0.14 3E-06 62.5 5.3 54 724-777 281-334 (531)
32 KOG0048 Transcription factor, 92.2 0.26 5.6E-06 55.4 6.3 49 938-986 62-111 (238)
33 KOG0049 Transcription factor, 92.1 0.18 3.8E-06 63.3 5.0 45 938-982 360-405 (939)
34 KOG4468 Polycomb-group transcr 90.8 0.16 3.6E-06 63.1 3.0 48 722-769 88-145 (782)
35 KOG1279 Chromatin remodeling f 90.2 0.38 8.2E-06 59.8 5.4 56 720-775 251-306 (506)
36 PLN03142 Probable chromatin-re 86.3 1.1 2.3E-05 60.2 6.1 50 937-986 823-873 (1033)
37 KOG0457 Histone acetyltransfer 86.3 0.83 1.8E-05 55.8 4.7 43 724-766 74-117 (438)
38 KOG0050 mRNA splicing protein 83.4 1.1 2.5E-05 55.5 4.1 45 938-982 7-52 (617)
39 KOG0048 Transcription factor, 78.9 2.2 4.9E-05 48.1 4.3 45 938-982 9-55 (238)
40 PF13837 Myb_DNA-bind_4: Myb/S 76.5 3.1 6.8E-05 39.3 3.9 50 939-988 2-69 (90)
41 KOG0049 Transcription factor, 75.3 3.6 7.8E-05 52.5 4.9 49 938-986 412-464 (939)
42 KOG0051 RNA polymerase I termi 70.4 4.5 9.7E-05 51.6 4.2 48 937-984 435-508 (607)
43 PF13873 Myb_DNA-bind_5: Myb/S 69.3 13 0.00028 34.9 6.0 48 939-986 3-72 (78)
44 PLN03162 golden-2 like transcr 65.4 12 0.00026 45.5 6.1 49 938-986 237-290 (526)
45 PF12776 Myb_DNA-bind_3: Myb/S 65.0 13 0.00029 35.6 5.3 54 940-993 1-72 (96)
46 KOG0724 Zuotin and related mol 60.3 2.7 5.9E-05 49.1 -0.2 44 939-982 54-97 (335)
47 COG5118 BDP1 Transcription ini 55.3 15 0.00032 45.0 4.5 62 702-765 344-408 (507)
48 KOG2009 Transcription initiati 55.2 9.7 0.00021 48.6 3.3 46 937-982 408-453 (584)
49 KOG0051 RNA polymerase I termi 48.9 23 0.0005 45.6 5.1 47 937-984 383-429 (607)
50 PF11035 SnAPC_2_like: Small n 41.4 97 0.0021 37.7 8.2 50 937-986 20-73 (344)
51 PF00191 Annexin: Annexin; In 38.0 45 0.00097 30.2 3.9 44 947-990 4-47 (66)
52 KOG1079 Transcriptional repres 33.0 32 0.00068 44.8 2.9 42 939-980 410-451 (739)
53 PF09420 Nop16: Ribosome bioge 31.7 69 0.0015 34.8 4.8 47 938-984 114-164 (164)
54 COG5147 REB1 Myb superfamily p 30.8 45 0.00097 42.5 3.7 44 722-765 72-115 (512)
55 COG5147 REB1 Myb superfamily p 29.6 50 0.0011 42.1 3.8 47 938-984 72-118 (512)
56 PF05263 DUF722: Protein of un 28.6 99 0.0021 33.3 5.2 47 939-986 80-127 (130)
57 PF05263 DUF722: Protein of un 25.4 53 0.0011 35.3 2.6 48 721-769 78-126 (130)
58 PF08281 Sigma70_r4_2: Sigma-7 25.0 1.6E+02 0.0036 25.7 5.1 43 942-986 12-54 (54)
59 PF13384 HTH_23: Homeodomain-l 24.8 1E+02 0.0022 26.6 3.8 46 942-990 3-48 (50)
60 COG5114 Histone acetyltransfer 24.0 78 0.0017 38.4 3.8 53 723-775 64-117 (432)
61 KOG4282 Transcription factor G 23.8 1.1E+02 0.0024 36.4 5.0 39 939-978 55-108 (345)
62 PF04504 DUF573: Protein of un 23.7 1.5E+02 0.0033 30.2 5.2 49 939-987 5-66 (98)
63 cd07939 DRE_TIM_NifV Streptomy 23.3 84 0.0018 35.9 3.8 51 937-987 132-182 (259)
64 KOG3841 TEF-1 and related tran 22.3 1.1E+02 0.0024 38.0 4.6 46 939-985 77-144 (455)
65 KOG0050 mRNA splicing protein 22.1 79 0.0017 40.4 3.5 46 721-766 6-52 (617)
66 PF00682 HMGL-like: HMGL-like 21.0 60 0.0013 36.1 2.1 51 937-987 130-180 (237)
67 PF01388 ARID: ARID/BRIGHT DNA 20.2 2E+02 0.0043 27.9 5.1 35 949-983 41-88 (92)
68 PF13837 Myb_DNA-bind_4: Myb/S 20.1 1.1E+02 0.0024 29.0 3.4 41 723-763 2-60 (90)
No 1
>KOG1878 consensus Nuclear receptor coregulator SMRT/SMRTER, contains Myb-like domains [Transcription]
Probab=100.00 E-value=1.1e-84 Score=795.37 Aligned_cols=1338 Identities=20% Similarity=0.146 Sum_probs=1008.8
Q ss_pred CCCCcceecCCCccccCCCCcCCccccCCCCCCcccCCCCCCCCCCCccc--ccCCCccc-ccc----------------
Q 000304 5 ESTRISVSRGDGKYGRNSRENRSSFCQSDCKGYAWDTSNGYATTPGRLHE--VNCNQRSV-DDM---------------- 65 (1697)
Q Consensus 5 ~~~rp~~srgd~~y~r~~r~~rg~~~q~~~r~~~~e~~n~~~~~~~r~~~--~~~~~rsv-~~~---------------- 65 (1697)
.++|+..|+++|.|.++.+|+|-+..|..|.+..|++++++...+.++++ .++.+|++ +++
T Consensus 127 ~~rk~~ask~r~~yek~fpe~R~sReqqER~~~~~~ts~rse~~f~s~l~qe~~~k~~r~~a~iP~~~~D~~~~v~nkle 206 (1672)
T KOG1878|consen 127 SRRKAKASKTREYYEKQFPEIRKSREQQERWQRASETSARSEHEFSSILDQENAEKQMRQLAVIPRMLTDSARQVRNKLE 206 (1672)
T ss_pred CcccchhhhhhhhhhhhCchHHHHHHHHHHHhhhhhhcccccccchhhhccccchhhhhhhhccCcccccchhhhhhhhc
Confidence 47899999999999999999999999999999999999999988888888 55666666 333
Q ss_pred ----ccC-CCCCCCC-----------------------------------------------------------------
Q 000304 66 ----LTY-PSHPQSD----------------------------------------------------------------- 75 (1697)
Q Consensus 66 ----l~~-~s~p~s~----------------------------------------------------------------- 75 (1697)
|+| |--+|.|
T Consensus 207 ~~N~~~~d~nkv~k~~~~~n~Ws~~Ek~~fk~rf~~H~knf~~~as~~erkSv~d~vlfyy~nkkte~yk~~~~r~~~r~ 286 (1672)
T KOG1878|consen 207 NMNSLMKDPNKVHKDRQRMNEWSPEEKELFKSRFAQHVKNFGLIASFFERKSVSDCVLFYYLNKKTENYKKLVRRPKKRS 286 (1672)
T ss_pred cCCccccCcccccchHHHhhhccccccccccchhhhcCcchhhhhhhhcccchhhceeeeeecccchhHHhhhccccccc
Confidence 121 0011222
Q ss_pred --------------cc-ccccccccCccc-cccccccCCCCccccccccCC--CCccccccccCCCCCCCCCCccCCCCC
Q 000304 76 --------------FV-TWDHLQLKDQHD-NKIGSVNGLATGQRCESENSL--DWKKIKWTRSGSLSSRGSGLSHSSSSK 137 (1697)
Q Consensus 76 --------------~~-~w~q~~lkd~~d-nk~~~vn~~~tg~r~dre~~~--~wkp~~w~~sgs~ss~~sg~shsss~~ 137 (1697)
.. +|++..|+|..+ |+..+++..-..+.+.||... .-++++|.- +.+++.-++|||.++.+
T Consensus 287 ~s~~~~~~~~~~~Ele~~ee~~~ledpkes~~~~~~~d~~~~~~~~resv~~e~~~~Ple~~-ei~a~e~de~see~ev~ 365 (1672)
T KOG1878|consen 287 QSYKVGAFPSPEEELEKEEEKPELEDPKESFPKNKLIDYFGERTVERESVNGEEPFMPLEPY-EIFAIEPDELSEEMEVA 365 (1672)
T ss_pred hhccccccCChHhhhhhhhhcccccCccccccccccccccccccccccccccCCCCCCCCCc-cccccCccccchhhhhh
Confidence 13 899999999987 889999999999999999999 888889998 99999999999999999
Q ss_pred CCCCCCCCCCCCcccccccccccCCCCCccceeccCccccccccccCCCCc-ccchhhhhhccccccCCCCCCCCCCccc
Q 000304 138 SMGGVDSSEGKTDFQVKNATSIQSPSGDAATYATSGVLFEETTSRKKPRLG-WGEGLAKYEKKKVEVPDVSGNKDGVFNF 216 (1697)
Q Consensus 138 s~~~~ds~e~~~~~~~k~~t~~~s~s~da~a~~~~~~~see~~~rkk~rlg-wgeglakyekkkv~~p~~~~n~dg~~~~ 216 (1697)
.+|.||....++.+.|+.+|..++..++|.||.+..|..+|+..++|.+++ |+++++||++++|++ ..++++...+
T Consensus 366 k~Glveh~R~~aai~p~vvt~tes~c~na~a~~~~r~N~d~~ld~~k~k~~t~~e~~~k~k~~~vav---t~s~~~~e~m 442 (1672)
T KOG1878|consen 366 KSGLVEHGREWAAILPKVVTKTESQCKNAYAKYKNRHNLDEPLDQHKQKVRTRAEIRDKSKSTRVAV---TFSAKEDETM 442 (1672)
T ss_pred hccchhhhhhHHHhcCccceecccchhhHHHhhhhhhcchhhhhhhhcccccHHHHHhhhcCccccc---cccccccccc
Confidence 999999999999999999999999999999999999999999999999999 999999999999999 7778999999
Q ss_pred cCCCCccccccccccccCCCccccCCCCCCCCCCcccCCCCCcchhcccccccccccccccccC-CCCcccccccccccc
Q 000304 217 SSNAEPLQSLSSNLAEKSPRVMGFSDCASPATPSSVACSSSPGVEEKAFGKAVSVDNDVSNLCG-SPSIVSQNHREGFLF 295 (1697)
Q Consensus 217 ~~n~e~~~~~~~nl~dksp~~~~~~dc~spatpssvacssspg~~~k~~~k~~n~~~~~~n~~~-sp~~~~~~~~~~~~~ 295 (1697)
..+.|..+.+.+++++++|+....-+..||.|+++|+|+|+|+++.++..+.+.+.-.++|+|. .+++...+|++.|.+
T Consensus 443 E~~neeE~~~d~e~l~~s~t~~vv~nd~s~t~~~sv~~~s~Pt~~~~ss~~~~~n~~r~p~e~~~q~s~~~~i~te~~~~ 522 (1672)
T KOG1878|consen 443 EISNEEEETEDAEALNYSGTKQVVWNDDSSTTNLSVAIESSPTPDTESSSWEGMNQPRRPNECEMQYSAMNGIKTEPMIE 522 (1672)
T ss_pred ccccchhcccchhhhccCcccccCCCCCCCCccccccccccCCccccccchhhhcCCCCCccccccccccccccccCCch
Confidence 9999999999999999999877777788889999999999999999999999999899999999 999999999999999
Q ss_pred cccccCCcccchhhhHHHHhhccCCCCCCCccccccccccceehccchhhhhhhhhhhhhhhhhhhhhhcccccCCcCCC
Q 000304 296 NLEKLDTNSIGNLGSSLVELLQYDDPSSVDSSFVRSTAMNKLLVWKGDILKTLEMTETEIDSLENELKSLKSVLGSTSPC 375 (1697)
Q Consensus 296 ~l~~ld~~~~~~lg~~l~ellq~dd~~s~ds~~~r~t~~~kll~~k~~i~k~le~te~eid~le~elks~~~~~~~~~~~ 375 (1697)
+.+++|.+.....|+-|.|||..||..+.|+..+.+|+||.++-|| |.+||+|.||+. |++...+|.+.. -
T Consensus 523 ~~eE~d~i~~e~~gpp~~~ll~t~t~~~~e~~~~~~t~~~d~~~~k----k~~e~ae~eie~-e~ke~~~k~e~~----a 593 (1672)
T KOG1878|consen 523 EVEEEDAIGQEEGGPPLAELLNTDTTSSAEPRRSKGTAENDKKPLK----KDTERAEREIET-EGKERTGKAETR----A 593 (1672)
T ss_pred hhhhhccccccccCccHHHHhcCCcccccchhhhhhhhccccchhh----hhcccchhhccc-cccccchhhhhh----c
Confidence 9999999999999999999999999999999999999999999999 999999999998 888888888875 2
Q ss_pred CcccccccccC--CCCcccccccccccccCCCCccccc-CCCcccccCCCCCCcccccCCCCCccCCCCCcccccccccc
Q 000304 376 PVTSISLSVED--NANPFNKQGTVSNSIIRPAPLQIDC-GDLSVENMPDCSHGLEEVHGNSKDEDIDSPGTATSKFVEPS 452 (1697)
Q Consensus 376 p~~~~~~~~~~--~~~~~~eq~~~s~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ee~~dspg~a~~k~vep~ 452 (1697)
-+...++++++ ++....|++.+ +|.|+.... -..+..+.|+..++ ++++..+ |+|+- +.+.
T Consensus 594 q~~~~~~~~d~~~dE~~e~E~e~~-----~~dp~astgS~~kn~~~aPvD~a~---~p~~~~~---dsp~~-----~~~~ 657 (1672)
T KOG1878|consen 594 QRVPKPVDDDGSADEIDEMEIEDS-----LPDPLASTGSRRKNSVKAPVDLAG---SPADMEG---DSPEP-----PDQD 657 (1672)
T ss_pred ccCCCccccccchhcccccccccc-----cCCcccCccccccccccCcccccc---Ccchhhc---cCCCC-----cCcc
Confidence 33456677888 78888899885 444554443 23444488888777 4566666 67776 3443
Q ss_pred ccccCCCCcccccCCcccccccccccccccccccCCCCCccccccCCC-ccCCCccccccccccccccCccccccchhhH
Q 000304 453 SFVKPVSPSNMLKNGESFGVLDTVHSSNTEVKCTMPGSSFGEVVAGAS-TCGDGDMILESKNDALISSNFSAYADGENML 531 (1697)
Q Consensus 453 ~~~~~~~~~~~~~~~e~~g~~~~~~s~~m~~~~~~~~~~~~~~~~~~~-~c~d~~~~~e~~~~~~~s~d~~s~~~~~~SL 531 (1697)
+ .++.+....+ |+..+.. |+ +.|+ .....++++ +-++ .++. .+++=...+..+..+
T Consensus 658 a-----a~~~~~~~~~---~i~~~~~--~~--~dv~---~k~~~spa~rs~qe---~~D~-----~~ps~~p~~~ke~~~ 714 (1672)
T KOG1878|consen 658 A-----APTQPPDQDP---DIEEVIQ--RD--IDVP---VKTLLSPASRSGQE---KIDF-----ETPSHVPRIQKESEV 714 (1672)
T ss_pred c-----cccCCCCCCC---chhhhcc--hh--cccc---cccccChhhhccCC---cccc-----cCcCCCccccCcchh
Confidence 4 5555555554 3333333 44 2233 222333333 2222 1111 111212445577888
Q ss_pred HHHHHHHhHHHHHHHHHHhhccCCCCCCCCcccCc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000304 532 CDMILGANKELANEASEVLKKLLPRDHSNIDISGV-ANVFCCQNDSLVKEKFAKKKQLLRFKERVLTLKFKAFQHLWRED 610 (1697)
Q Consensus 532 vQ~IyaENRKkAeeAh~iL~gLgPqvelPLd~~~v-yNqdt~QyhEnIkeklAeRKqLLrfKer~La~KY~aL~eaWeek 610 (1697)
||...-+|.|.+..-.-++..+++.++.=....++ +-+.|.|.+-.+.++.+ +--.++.+..++-..|+....-|.++
T Consensus 715 i~p~p~ap~k~s~~~~Gv~n~~~~i~h~~~sek~a~~~g~~t~~~sh~qe~s~-sVG~~r~r~~r~~d~~k~ael~~vk~ 793 (1672)
T KOG1878|consen 715 IQPPPHAPTKISESPDGVRNDPLLIDHYYVSEKGAISPGPCTQLSSHLQESSA-SVGGRRKRLERSNDQFKAAELSGVKQ 793 (1672)
T ss_pred ccCCCCCCcccccCCCCCcCCccccccccccCCcccCCCccccccchhhhhcc-cccccccccccccchhhhccccccch
Confidence 88888888777776655554443333110011111 22344666666666665 33335555555666788888889988
Q ss_pred HHHHhhhhhhhhchhhhccccccCCCCccCCccccccccCCccCC--CCccccHHHHHHHHHhhcchhhhhhhhcccccC
Q 000304 611 LRLLSIRKYRARSQKKCELSLRTTYTGYQKHRSSIRSRFSSPAAG--NLSLVQTAEVINFTSKLLSDSQIKTYRNSLKMP 688 (1697)
Q Consensus 611 ~Rlls~~KrRAKe~KkRE~~~rt~FPEl~KQRsSlReRF~rr~Gg--~LS~vseAEI~Ei~~qlekDpq~KkmR~aAvIP 688 (1697)
+..+....+.+++.+..+.......|+.-.+-+..|-++....-. .-..+-+-|.+.+++...-....+..|.+.++|
T Consensus 794 ~qqesl~~~qaqea~s~~~~~~svt~g~L~~gt~vRl~~~~Sp~rs~~~~hVi~le~~~g~es~~p~~eiap~r~~lk~~ 873 (1672)
T KOG1878|consen 794 EQQESLQVPQAQEAKSENAYPGSVTPGVLVKGTIVRLVNEDSPSRSVAKGHVITLEYEGGMESSVPPHEIAPKRIYLKMP 873 (1672)
T ss_pred hhhhhhcchhhhhcccccCCccccccceeeeceeeecccCCCCCcccccCceeeeeccccccccCCcccccchhhhhccc
Confidence 777777667777776655544455555444444555555322101 001122222323333333333345667888899
Q ss_pred ccccChhcccccEeecCCCCCcchHHHHhhhccCCCCC-HHHHHHHHHHHHhcCCCHHHHHhhcCCCChhHHHHHhhhcc
Q 000304 689 ALILDKKEKMSSRFISSNGLVEDPCAVEKERAMINPWT-SEEREIFVDKLATFGKDFRKIASFLNYKTTADCVEFYYKNH 767 (1697)
Q Consensus 689 pMILD~eERr~~kFiDtNgLVeDP~avyKerq~in~WT-EEEkeIF~EKYlqhPKnFGKIAs~Lp~KTvaDCVlyYYltK 767 (1697)
.|+++..|..+.+||-+||.+.++....+.+.+..+|+ -|+.+.|+.....++|.|-.|++++..++.++ +.|||+..
T Consensus 874 a~v~~~~E~~msr~i~tn~~~~~~~~~~~~~~g~~P~~t~E~~e~~Ln~lr~~~k~~P~i~~s~~a~kt~q-~~~~lkp~ 952 (1672)
T KOG1878|consen 874 AVVSAGAEGLMSRAIPTNNHSPALLKEPIVQQGGIPRRTVETPEDILNPLRPTAKSTPPIRQSLGAFKTQQ-QQQQLKPQ 952 (1672)
T ss_pred ccccccccccccccccCCCCCccccccchhhccCCCcccccchHHHhhhccccCCCCCchHHHHHhhhhhc-cchhhcch
Confidence 99999999999999999999999999988889999999 99999999999999999999999999999999 55555544
Q ss_pred cCcChHHHHhhhccCCCCCCc--ccccccccccc-cccccchhhhhhchhhHHHHHhhhccccccccccccCCCCCCCCC
Q 000304 768 KSDCFEKLKKKHDFSKQGKTS--TNTYLVTTGKR-NRKMNAASLDILGEASEIAAAAQVDGRQLISSGRISSGGRGDSRT 844 (1697)
Q Consensus 768 K~~nYKkLlRk~~lRKRGKss--~~nyL~~sGkk-Nre~naaSldilGaaS~~Aa~A~~a~~~~~sS~~i~s~g~~esk~ 844 (1697)
+...+ .++++ -+|++. ..+|+....++ .+++-++.+||++..+..+-...++...+.++..+++++......
T Consensus 953 ~s~~~-~~Ik~----~~~rs~~~i~~y~~~~~r~~k~~~~aa~Tdik~Dg~st~~a~k~av~~~i~sP~~t~~~~~s~~v 1027 (1672)
T KOG1878|consen 953 QSNLM-QTIKN----ENGRSIHEIPPYQQQQQRPQKEGSIAAGTDIKRDGSSTSGAPKHAVQRLISSPDETLRGLFSLPV 1027 (1672)
T ss_pred hhhHH-HHHHh----hcccchhcccHhhhhcchhhhhhhccccCcccccCccccccchhheeccccCchhhcCCCCcccc
Confidence 44444 44443 133332 24777666655 778888999999875332211222222111233333333321111
Q ss_pred CCCCCCcccc-CCCcccCCCcccchhcccccccccccCcccccccccCCCCCcc--------cchhhhhcc-----cccc
Q 000304 845 SLGDDGIIER-SSSFDVIGGERETAAADVLAGICGSLSSEAMSSCITSSVDPAE--------GQRDWRRQK-----ADSV 910 (1697)
Q Consensus 845 ~e~~dg~~er-ss~~D~~G~EREtvaAdvkAgItgSmSsEa~ssc~TtSvDP~~--------G~re~K~~K-----v~s~ 910 (1697)
-.......++ .+.++..| .-++.+.+.+ ...+.++-.++|-..+..+.. +.+..+... -++.
T Consensus 1028 ~~~~~~~~~g~~~~~~~~~--~~ta~~~i~s--v~~~~~~~~~~~hr~s~S~~s~~a~~lP~~~~~~~~~~sp~l~~~ss 1103 (1672)
T KOG1878|consen 1028 IPEQQRPAEGCKYEQPKHG--QNTASASISS--VDQGPPVLGPALHRDSLSQLSTSATHLPPPHLVSMQRPSPTLHNRSS 1103 (1672)
T ss_pred cccccchhhcccccccccC--Cccccccccc--ccCCCcccchhhcccccccccchhhcCCCcccccccCCccccccccc
Confidence 0000001111 11122223 1122222211 123333333333332222111 111111000 0111
Q ss_pred ccCCCCcccccccCCCCCCcccCCCCCCCCCCHH-HHHHHHHHHHHhCCChHHHHhHhCCCCHHHHHHHHHHHHHHhCCC
Q 000304 911 MRLPSTSDVTQNVDDDTCSDESCGEMDPSDWTDE-EKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSKARKCLGLD 989 (1697)
Q Consensus 911 ~~~P~tsdvtq~~deet~Sd~S~gEm~ssrWTdE-EkelFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~kyRKRlnLD 989 (1697)
.+++ .++-+- +..|++++|.+.+...|+.. |+-.|......+||.+.-|+..+++....||+.||..|++...|.
T Consensus 1104 ~t~~---~~tsn~-~~~~se~s~~~~~~i~~v~~~e~~~r~~~~~dlgR~~~~is~~~~~~~~~~~~~f~sa~r~~~qLe 1179 (1672)
T KOG1878|consen 1104 STEP---TGTSNP-DNRESEHSTTPEDAIHPVTNNENFSRIRNAIDLGRSHTPISNYPANIDRSMKSSFASAYRHERQLE 1179 (1672)
T ss_pred cccc---ccCCCc-cccccccccCcccCCccccccchhhhccchhhhccccccccccccccChhhhhhHHHHHHHHhccc
Confidence 1111 111111 23467778888888999998 999999999999999999999999999999999999999999987
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCcccccccCcccccCCCCCccccCCCcccccccccccchhhccccccccCCCCCCC
Q 000304 990 LIHTGRGNVGPSVNDDANGGGSDTEDACVLETSSVNCSDKLGSKTDEELPSHVIHSNQEESCSAGAKNLQTDLNKPEDDN 1069 (1697)
Q Consensus 990 ~il~e~~~~g~P~sDda~gggS~t~dac~~E~~s~~~sd~s~~~~~~d~p~~~~~~~~~~s~~~~~~~~~a~L~~~e~~~ 1069 (1697)
..-.-+..+ -+-.-.++.++|-.++|.++.+.++...+.+.++..++|..-.+++.+..++.+.++++.++.....-|
T Consensus 1180 ~~p~~~~~v--av~n~~~~i~~D~~ts~~m~~N~~~~n~~v~~~~r~lsP~~~~i~~~y~a~p~g~~~~s~~~~~~~~~n 1257 (1672)
T KOG1878|consen 1180 PTPSYPNIV--AVQNIRQTITNDYITSQQMLVNPVNGNGQVNDDGRGLSPTEHAISQGYPAFPRGIIDLSQIPRAPPKFN 1257 (1672)
T ss_pred CCCCCCcce--ehhccccccccCcccchhhhcCccccccccCccccccCcccchhhccCCccCCCccccccCCCCCcccC
Confidence 743222111 011124567789999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCcccccccccchhhhccc-----chhcccccccCccccchhhhhhhhhhhhhhHHhhhhhhhcccceeecCC
Q 000304 1070 GITPLNDKDSEAVKPVNNDAFRTESR-----SFELESNNMNGMDNQSESVLDQKNAVELFKTAVRDKVAEQGAVSVSAGE 1144 (1697)
Q Consensus 1070 g~~~~~~~d~~~~~~~~~d~~~~~~~-----~~~~d~~~~~~~~~qs~~~~~~~~~~~s~~~~~~d~~~~~~~~s~~~~~ 1144 (1697)
+. .+...+.+ .|++.|+.++.| .++.|+..+++.+.|+.+.+ ..+++ ||| +.+...+++..
T Consensus 1258 ~~-~~~l~~~~---~la~~p~a~~~F~sr~~ns~~~~~~~~t~ea~~~~a~----~~r~~---E~d---~~~~t~~~i~~ 1323 (1672)
T KOG1878|consen 1258 PS-GLPLAAMD---RLAYAPYAMSSFPSRKENSARDSPGIPTHEAQSQAAG----RLRSR---ERD---EGRETEVTISS 1323 (1672)
T ss_pred CC-CCccchhh---hhhhCccccccCCCccccccccCCCCchhhhhhhhhh----HHhhh---hcc---ccccccceeec
Confidence 97 55555544 577788888885 66899999999998888877 34433 566 45678889999
Q ss_pred CCCCCCCCcchhhccccccccccccccCCCcccccccccccccccccccccccCccccccccccccccccccccc-----
Q 000304 1145 ESDPCPSSSNAVEETNDVVAEASTEGFGNGLERYQPMLLENSLNDVRDKICNVDACGESEIVQDSNTTGSAFDLY----- 1219 (1697)
Q Consensus 1145 ~~~~~~s~~~~~~~~~~~v~e~~~~~~~n~~~~~~~~~~~~sl~~~~~~~~~~d~~~~~~~~~~s~~~~n~~~~~----- 1219 (1697)
++++|. .+.+..+++| |++.++. ++..++.+++.. +.++||.+++|.|++.++
T Consensus 1324 s~~~~~-----~~~~~~~~~e----~s~~~sg-~gs~~~r~s~~~------------~qq~~q~~~rtq~~~lq~~s~p~ 1381 (1672)
T KOG1878|consen 1324 SPLYCG-----LSVLSNPGVE----GSRGGSG-QGSPSPRFSSKN------------QQQVMQAANRTQNSGLQPPSAPH 1381 (1672)
T ss_pred cccccc-----ccccccCCcc----ccccccC-CCCCCchhhhhh------------hhhhhhhhhhhcccccCCccccc
Confidence 999997 6677788888 5555555 777888888888 889999999999999776
Q ss_pred ---cCCCCcceeeccccCCCCCccccCCCCCCCccccc-cchhhHHHHHHhhhccccccccccccccccCCcccccCccc
Q 000304 1220 ---VDASSHSVSSKLDSVDKPPLISLPQWNSHPAAAST-QDSSVIQCEKAFIQDRMSSTLEFQRSKDKSGHKSVVSDDYR 1295 (1697)
Q Consensus 1220 ---~~sc~~~v~~~~~s~~~p~~~sl~~~n~~~~~~s~-~~s~~~q~ek~~~q~~~~s~~~~~~~~d~~~~~s~~~d~~~ 1295 (1697)
+..|+|+|+.++|. +.|..++.+..|++|++.|. +.+.++|+.+||+.+|.+.+|++ |+..
T Consensus 1382 g~~~~~~l~~v~~~~~t-~~p~g~~~~~~~p~~~~~s~~~s~l~~~vd~t~~~~~~~~~le~--------------~~r~ 1446 (1672)
T KOG1878|consen 1382 GTRYPECLHAVPPSVST-ELPIGVSAPRGNPAAHAESASGSSLGGQVDETHDLGWEPNNLEL--------------DGRL 1446 (1672)
T ss_pred ccCCcccccCCCccccc-cccccCcCCCCCccccCcccccCCCcccccccccccCCcccccc--------------cchh
Confidence 35699999999999 99999999999999999999 99999999999999999999999 8888
Q ss_pred cccCccccccccccccccCCccccccccccccCcccccchh--hhhhc-----ccccCCCCCccccccccccccCCCCCC
Q 000304 1296 QHLSVHSIVNHVESPQILNGYPLPISTKKEMNGDINCRQLS--EVQSI-----SKSDRNIDEPYLAQDCYLRKCNSSMPH 1368 (1697)
Q Consensus 1296 q~l~~~~l~~~~~~~~~~~gyp~qip~kkemn~d~~c~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1368 (1697)
|.+ | |+ .|.||..++-.|. ..|.++. +++++ ++++..+.++.+++ +.+.||......
T Consensus 1447 ~a~-~-----~~--------~~~q~g~~~~~~~-~~~~~~~~~~s~~~s~~~r~~s~~v~~~a~~~~-~p~k~~~~~~~~ 1510 (1672)
T KOG1878|consen 1447 QAL-G-----HV--------NPEQIGHLKLTNT-ESCQNPQRSSSQDPSRIPRPKSDLVVKTARTGE-FPLKKCTPSAPK 1510 (1672)
T ss_pred hhc-c-----cC--------CHHhhcchhhcCc-hhhcccccccccCCCCCCccCCcchhcccccCC-CCccccCcccCC
Confidence 877 6 77 8999999999999 8999887 66655 89999999999999 999999999988
Q ss_pred CCcccccccccccccccCccccccccCCCCCcccCCCCeeeeeecccCCCCCCCCCCcccCCCCCCCCC--CCCccc---
Q 000304 1369 SSVTELPFLAENIEQTSDRRRAHSCSFSDTEKPSKNGDVKLFGKILSHPSSSQKSAFSSHDNGENGHHH--KQSSKA--- 1443 (1697)
Q Consensus 1369 ~~~~elp~~~~~~~~~~~~~r~~~~s~s~~ek~~rngdvklfg~ils~~~~~q~~~~~~~~~~~~~~~~--k~~~~s--- 1443 (1697)
|.-.-+.+..+++-|+|+.+.++++.-.+||++||||-|||-+ +++.+.+|. .+...+
T Consensus 1511 ------p~~~~~~~~~s~~~r~~s~s~~~s~~~~~~~sl~~~gs~ls~d-----------~~e~~s~~s~p~~~~e~~~~ 1573 (1672)
T KOG1878|consen 1511 ------PLAVSHKEGASGPSRSKSFSLSDSERLHKNGSLKLHGSVLSTD-----------ANEIKSPHSSPGIVREKSTL 1573 (1672)
T ss_pred ------CCCCccccccCCCCCchhhccccccccccccccccccccccCc-----------cccccCCCCCCCCccccccc
Confidence 7777777888999999999999999999999999999999999 777777754 443333
Q ss_pred cccccccCCCCCCCcccccCCCCCCCCccCcccccccccCCCccccCCCCCCchHHHHhhcccccCCCC
Q 000304 1444 SNLKFTAHHPPDGGAALLKFDRNNYVGLENGPARSYGFWDGSKIQTGFSSLPDSAILLAKYPAAFGGYP 1512 (1697)
Q Consensus 1444 ~~~~~tgh~~~d~~~~~~k~~~~~~~glen~p~~syg~wdg~~iqtg~sslp~~~~~lak~paafsny~ 1512 (1697)
+.+-.|.||.+ ++-.|.|+|.-+|||||| ||++||+++.+++-||+||+..+
T Consensus 1574 ~~~~~~~~~~~------------e~~~~~~~p~~~~~~~~~-----~l~slpesa~~~ss~~e~~~~~~ 1625 (1672)
T KOG1878|consen 1574 SRLEDTRHHYA------------EQQHLQNVPGPSYGFWDG-----GLTSLPESAKLLSSCPEAFSTVL 1625 (1672)
T ss_pred ccHHHHHHHHh------------hccccccCCCcccccccc-----ccccChhhccccCcchhhhcccc
Confidence 34557888887 567899999999999999 99999999999999999999765
No 2
>KOG1878 consensus Nuclear receptor coregulator SMRT/SMRTER, contains Myb-like domains [Transcription]
Probab=100.00 E-value=1.2e-40 Score=410.07 Aligned_cols=230 Identities=23% Similarity=0.370 Sum_probs=194.6
Q ss_pred cccchhhHHHHHHHHhHHHHHHHHHHhhccCCCCCCCCcccCcccccccccchHHHHHHHHHHHHHHHHHHHH-------
Q 000304 524 YADGENMLCDMILGANKELANEASEVLKKLLPRDHSNIDISGVANVFCCQNDSLVKEKFAKKKQLLRFKERVL------- 596 (1697)
Q Consensus 524 ~~~~~~SLvQ~IyaENRKkAeeAh~iL~gLgPqvelPLd~~~vyNqdt~QyhEnIkeklAeRKqLLrfKer~L------- 596 (1697)
...++.+||++||+| +++|+|++++++|+++. ++.||+++|++++. .-++||.+++
T Consensus 43 fe~k~~~~v~~ip~~-----------~~g~~p~v~~~~~n~Ps---~t~q~~~~igie~~---~~l~Fk~~~~ark~~~~ 105 (1672)
T KOG1878|consen 43 FEIKHRSLVQIIPDE-----------EEGLGPYVELSLYNQPS---DTNQYLELIGIEQS---LPLLFKRRNFARKQLAQ 105 (1672)
T ss_pred cccccCcceeecccc-----------ccCcccccCccccCCCc---cchhhHhhhhhccc---hhhhcccccccchhhHH
Confidence 344668999999999 99999999999954433 88999999999998 2255554444
Q ss_pred --HHHHHHHHHHHHHHHHHHhhhhhhhhchhhhccccccCCCCccCCccccccccCCccCCCCccccHHHHHHHHHhhcc
Q 000304 597 --TLKFKAFQHLWREDLRLLSIRKYRARSQKKCELSLRTTYTGYQKHRSSIRSRFSSPAAGNLSLVQTAEVINFTSKLLS 674 (1697)
Q Consensus 597 --a~KY~aL~eaWeek~Rlls~~KrRAKe~KkRE~~~rt~FPEl~KQRsSlReRF~rr~Gg~LS~vseAEI~Ei~~qlek 674 (1697)
.++|.+++++|++..+ ++..++|++..+.|++ +++.||+++++| +.++||++++. -+..++-|+.+++.|
T Consensus 106 k~~e~~s~~~~~~eks~~-~~~~~rk~~ask~r~~-yek~fpe~R~sR-eqqER~~~~~~--ts~rse~~f~s~l~q--- 177 (1672)
T KOG1878|consen 106 KFCERYSQLMEDLEKSVE-ENNSRRKAKASKTREY-YEKQFPEIRKSR-EQQERWQRASE--TSARSEHEFSSILDQ--- 177 (1672)
T ss_pred HHHHHHhhhhHHHHHhhh-hcCCcccchhhhhhhh-hhhhCchHHHHH-HHHHHHhhhhh--hcccccccchhhhcc---
Confidence 4559999999999987 7888999999999999 578999999999 58999987741 112233344443333
Q ss_pred hhhhhhhhcccccCccccChhcccccEeecCCCCCcchHHHHhhhccCCCCCHHHHHHHHHHHHhcCCCHHHHHhhcCCC
Q 000304 675 DSQIKTYRNSLKMPALILDKKEKMSSRFISSNGLVEDPCAVEKERAMINPWTSEEREIFVDKLATFGKDFRKIASFLNYK 754 (1697)
Q Consensus 675 Dpq~KkmR~aAvIPpMILD~eERr~~kFiDtNgLVeDP~avyKerq~in~WTEEEkeIF~EKYlqhPKnFGKIAs~Lp~K 754 (1697)
+...|+||++++||+|+.|...+...+|+++|+++.||+.+|+.++.+|.|+++||++|.++|.+|+|+|+.|++|++.|
T Consensus 178 e~~~k~~r~~a~iP~~~~D~~~~v~nkle~~N~~~~d~nkv~k~~~~~n~Ws~~Ek~~fk~rf~~H~knf~~~as~~erk 257 (1672)
T KOG1878|consen 178 ENAEKQMRQLAVIPRMLTDSARQVRNKLENMNSLMKDPNKVHKDRQRMNEWSPEEKELFKSRFAQHVKNFGLIASFFERK 257 (1672)
T ss_pred ccchhhhhhhhccCcccccchhhhhhhhccCCccccCcccccchHHHhhhccccccccccchhhhcCcchhhhhhhhccc
Confidence 55589999999999999995555557999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHhhhcccCcChHHHHhh
Q 000304 755 TTADCVEFYYKNHKSDCFEKLKKK 778 (1697)
Q Consensus 755 TvaDCVlyYYltKK~~nYKkLlRk 778 (1697)
|+.|||+|||++||+++||.++++
T Consensus 258 Sv~d~vlfyy~nkkte~yk~~~~r 281 (1672)
T KOG1878|consen 258 SVSDCVLFYYLNKKTENYKKLVRR 281 (1672)
T ss_pred chhhceeeeeecccchhHHhhhcc
Confidence 999999999999999999999994
No 3
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=99.56 E-value=2.2e-15 Score=174.21 Aligned_cols=232 Identities=16% Similarity=0.222 Sum_probs=133.4
Q ss_pred hhccCCCCCHHHHHHHHHHHHhcCCCHHHHHhhcCCCChhHHHHHhhhcccCcChHHHHhhhccCCCCCCcc-------c
Q 000304 718 ERAMINPWTSEEREIFVDKLATFGKDFRKIASFLNYKTTADCVEFYYKNHKSDCFEKLKKKHDFSKQGKTST-------N 790 (1697)
Q Consensus 718 erq~in~WTEEEkeIF~EKYlqhPKnFGKIAs~Lp~KTvaDCVlyYYltKK~~nYKkLlRk~~lRKRGKss~-------~ 790 (1697)
.....+.||.||+-+|..+|.+|+|+|++|-+.||+|+.+..|+|||.|||+..|...... ++.+..+ .
T Consensus 183 r~~~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~~~~~s~~~~----h~~~~~~~~~~~~s~ 258 (534)
T KOG1194|consen 183 RTEFPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKTREYDSQMNR----HRNETKTYEELFKSE 258 (534)
T ss_pred cCCCcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHHhhHHHHHHH----HHhhhhhhhhhcCCC
Confidence 3467789999999999999999999999999999999999999999999999999999887 2332211 1
Q ss_pred ccccccccccccccchhhhhhchhhHHHHHhhhccccccccccccCCCCCCCCCCCCCCCccccCCCcccCCCcccchhc
Q 000304 791 TYLVTTGKRNRKMNAASLDILGEASEIAAAAQVDGRQLISSGRISSGGRGDSRTSLGDDGIIERSSSFDVIGGERETAAA 870 (1697)
Q Consensus 791 nyL~~sGkkNre~naaSldilGaaS~~Aa~A~~a~~~~~sS~~i~s~g~~esk~~e~~dg~~erss~~D~~G~EREtvaA 870 (1697)
+++-.. .. |+ |+.+.... ...+|..--|...|.. |...+--|++---
T Consensus 259 ~~~E~~---~~--n~------~~~~d~~~-~~~a~~~~ec~~c~~y---------------------f~~~~vpRp~slr 305 (534)
T KOG1194|consen 259 NHLERV---PS--NC------GAKSDLLI-LNRAMSRHECKPCILY---------------------FRLMRVPRPASLR 305 (534)
T ss_pred cchhhc---cc--cC------cchhhHHH-HhhhhhccCccCceee---------------------eeccCCCChhHHH
Confidence 222100 00 00 11111110 0011110001111111 1111111222100
Q ss_pred ccccccccccCcccccccccCCCCCcccch----hhh-----hccccccccCCCCcccccccCCCCCCcccCCCCCCCCC
Q 000304 871 DVLAGICGSLSSEAMSSCITSSVDPAEGQR----DWR-----RQKADSVMRLPSTSDVTQNVDDDTCSDESCGEMDPSDW 941 (1697)
Q Consensus 871 dvkAgItgSmSsEa~ssc~TtSvDP~~G~r----e~K-----~~Kv~s~~~~P~tsdvtq~~deet~Sd~S~gEm~ssrW 941 (1697)
.++++ ..-.+-|-+|.. . ..|.. ..+ |++..++ .+.. +.+.++......-.| .|+ .+|
T Consensus 306 ~~~~~---rqR~~v~~p~n~---k-~~~kd~e~~s~~~~v~~~~~r~~~--~~q~--ve~~Ie~dkipes~c-~~n-~~~ 372 (534)
T KOG1194|consen 306 ALTKR---RQRLEVMEPANI---K-GIGKDKEEDSDIMVVDDCLLRKPS--GPQI--VEQSIEADKIPESTC-RMN-RCF 372 (534)
T ss_pred HHHHH---HhhhhhccCcch---h-hhhhhHHHHHHHHHHHHHHhhccc--hhhH--hhcccccCCCCchhh-hhc-ccc
Confidence 01100 000111111110 0 00000 000 0110000 0111 222333322222233 233 999
Q ss_pred CHHHHHHHHHHHHHhCCChHHHHhHhCCCCHHHHHHHHHHHHHHhCCCccccCCC-CCC
Q 000304 942 TDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSKARKCLGLDLIHTGRG-NVG 999 (1697)
Q Consensus 942 TdEEkelFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~kyRKRlnLD~il~e~~-~~g 999 (1697)
|.+|..+.++++++||++|..|+..||.+++.|+++||.+|++|++|+.++++|+ ++|
T Consensus 373 ~T~~~la~v~~I~~~~~~~~pl~wrik~t~cmee~e~l~~~~Rr~mfea~~~~s~v~~g 431 (534)
T KOG1194|consen 373 DTPAALALIDNIKRKHHMCVPLVWRVKQTKCMEENEILNEEARRQMFEATMTYSRVPKG 431 (534)
T ss_pred CcHHHHHHHHHHHHhccCcchhhhHhcCcchhhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999999999999999999999999999999999999999999999999999986 554
No 4
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.02 E-value=4.5e-10 Score=95.73 Aligned_cols=45 Identities=33% Similarity=0.674 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCC-hHHHHhHhC-CCCHHHHHHHHHHHH
Q 000304 939 SDWTDEEKSIFIQAVTSYGKD-FSMIARCIR-TRSRDQCKVFFSKAR 983 (1697)
Q Consensus 939 srWTdEEkelFleaL~kYGKD-WkaIA~~VG-TKTv~QcK~FY~kyR 983 (1697)
..||++|.++|++|+.+||.+ |.+||+.|+ +||..||++||++|+
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 479999999999999999999 999999999 999999999999984
No 5
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=98.97 E-value=3.8e-10 Score=129.18 Aligned_cols=61 Identities=30% Similarity=0.568 Sum_probs=56.4
Q ss_pred hhccCCCCCHHHHHHHHHHHHhcCCCHHHH-HhhcCCCChhHHHHHhhhcccCcChHHHHhh
Q 000304 718 ERAMINPWTSEEREIFVDKLATFGKDFRKI-ASFLNYKTTADCVEFYYKNHKSDCFEKLKKK 778 (1697)
Q Consensus 718 erq~in~WTEEEkeIF~EKYlqhPKnFGKI-As~Lp~KTvaDCVlyYYltKK~~nYKkLlRk 778 (1697)
.|..+..|+|+|++-|.+.+..|+|+|++| |..++.|++.+||.|||+|||...|......
T Consensus 273 ~rd~l~~wsEeEcr~FEegl~~yGKDF~lIr~nkvrtRsvgElVeyYYlWKkSeryd~~~qq 334 (445)
T KOG4329|consen 273 VRDDLSGWSEEECRNFEEGLELYGKDFHLIRANKVRTRSVGELVEYYYLWKKSERYDVFAQQ 334 (445)
T ss_pred cccccccCCHHHHHHHHHHHHHhcccHHHHHhcccccchHHHHHHHHHHhhcCcchhhHhhh
Confidence 456788999999999999999999999999 8999999999999999999999999876654
No 6
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=98.79 E-value=8.1e-09 Score=92.81 Aligned_cols=47 Identities=30% Similarity=0.434 Sum_probs=43.7
Q ss_pred CCCCHHHHHHHHHHHHHhCC-Ch---HHHHhHhC-CC-CHHHHHHHHHHHHHH
Q 000304 939 SDWTDEEKSIFIQAVTSYGK-DF---SMIARCIR-TR-SRDQCKVFFSKARKC 985 (1697)
Q Consensus 939 srWTdEEkelFleaL~kYGK-DW---kaIA~~VG-TK-Tv~QcK~FY~kyRKR 985 (1697)
-+||+|||.+|++||..||+ || ++|+++++ ++ |..||++|+|||+-+
T Consensus 4 ~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k 56 (57)
T TIGR01557 4 VVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK 56 (57)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 58999999999999999999 99 99999776 78 999999999999854
No 7
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=98.75 E-value=5.7e-09 Score=126.78 Aligned_cols=54 Identities=37% Similarity=0.594 Sum_probs=50.7
Q ss_pred hccCCCCCHHHHHHHHHHHHhcCCCHHHHHhhcCCCChhHHHHHhhhcccCcCh
Q 000304 719 RAMINPWTSEEREIFVDKLATFGKDFRKIASFLNYKTTADCVEFYYKNHKSDCF 772 (1697)
Q Consensus 719 rq~in~WTEEEkeIF~EKYlqhPKnFGKIAs~Lp~KTvaDCVlyYYltKK~~nY 772 (1697)
+...+.||+-|+.+|.++|.+|-|||-+|+..|+.|||++||+|||.|||...|
T Consensus 616 Y~gSd~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCVeyYYtWKK~~~~ 669 (907)
T KOG4167|consen 616 YAGSDKWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCVEYYYTWKKIMRL 669 (907)
T ss_pred ecCcccccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHHHHHHHHHHhccc
Confidence 466789999999999999999999999999999999999999999999998744
No 8
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.62 E-value=6.9e-08 Score=78.78 Aligned_cols=46 Identities=30% Similarity=0.690 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHHHHHHhC-CChHHHHhHhCCCCHHHHHHHHHHHHH
Q 000304 939 SDWTDEEKSIFIQAVTSYG-KDFSMIARCIRTRSRDQCKVFFSKARK 984 (1697)
Q Consensus 939 srWTdEEkelFleaL~kYG-KDWkaIA~~VGTKTv~QcK~FY~kyRK 984 (1697)
..||.+|..+|++++.+|| .+|..||..+++||..||+.+|+++.+
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999 999999999999999999999998754
No 9
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.58 E-value=1e-07 Score=76.88 Aligned_cols=43 Identities=30% Similarity=0.692 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHHHHhC-CChHHHHhHhCCCCHHHHHHHHHHH
Q 000304 940 DWTDEEKSIFIQAVTSYG-KDFSMIARCIRTRSRDQCKVFFSKA 982 (1697)
Q Consensus 940 rWTdEEkelFleaL~kYG-KDWkaIA~~VGTKTv~QcK~FY~ky 982 (1697)
.||.+|..+|++++.+|| .+|..||+.+++||..||+.+|+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence 499999999999999999 9999999999999999999999876
No 10
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=98.50 E-value=1.2e-07 Score=115.67 Aligned_cols=53 Identities=25% Similarity=0.606 Sum_probs=50.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChHHHHhHhCCCCHHHHHHHHHHHHHHhCCC
Q 000304 937 DPSDWTDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSKARKCLGLD 989 (1697)
Q Consensus 937 ~ssrWTdEEkelFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~kyRKRlnLD 989 (1697)
+++.||..|+.+|.+||-.|-|||..|+++|.+|||+||.+|||.|||...|+
T Consensus 618 gSd~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCVeyYYtWKK~~~~~ 670 (907)
T KOG4167|consen 618 GSDKWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCVEYYYTWKKIMRLG 670 (907)
T ss_pred CcccccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHHHHHHHHHHhccch
Confidence 57999999999999999999999999999999999999999999999988883
No 11
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=98.43 E-value=3.2e-07 Score=78.45 Aligned_cols=45 Identities=33% Similarity=0.637 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCC-HHHHHhhcC-CCChhHHHHHhhhcc
Q 000304 723 NPWTSEEREIFVDKLATFGKD-FRKIASFLN-YKTTADCVEFYYKNH 767 (1697)
Q Consensus 723 n~WTEEEkeIF~EKYlqhPKn-FGKIAs~Lp-~KTvaDCVlyYYltK 767 (1697)
..||+||.++|.+++.+||++ |.+||..|+ .||..+|..|||..+
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 479999999999999999999 999999999 999999999999753
No 12
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.24 E-value=1.8e-06 Score=70.49 Aligned_cols=46 Identities=30% Similarity=0.575 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHHHHHhcC-CCHHHHHhhcCCCChhHHHHHhhhccc
Q 000304 723 NPWTSEEREIFVDKLATFG-KDFRKIASFLNYKTTADCVEFYYKNHK 768 (1697)
Q Consensus 723 n~WTEEEkeIF~EKYlqhP-KnFGKIAs~Lp~KTvaDCVlyYYltKK 768 (1697)
..||++|..+|.+.+.+|+ ++|..||..|+.||..+|..+||..++
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999 999999999999999999999998654
No 13
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=98.17 E-value=3.2e-06 Score=74.63 Aligned_cols=41 Identities=32% Similarity=0.718 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHHHhCCChHHHHhHhCCCCHHHHHHHHHH
Q 000304 941 WTDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSK 981 (1697)
Q Consensus 941 WTdEEkelFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~k 981 (1697)
||++|..++++++.+||.+|..||+++|+||..||+..|.+
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~ 41 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRN 41 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988
No 14
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.03 E-value=8.4e-06 Score=65.84 Aligned_cols=43 Identities=33% Similarity=0.658 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHHHHhcC-CCHHHHHhhcCCCChhHHHHHhhhc
Q 000304 724 PWTSEEREIFVDKLATFG-KDFRKIASFLNYKTTADCVEFYYKN 766 (1697)
Q Consensus 724 ~WTEEEkeIF~EKYlqhP-KnFGKIAs~Lp~KTvaDCVlyYYlt 766 (1697)
.||++|.++|...+..|| ++|..||..|+.||..+|..|||..
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence 599999999999999999 9999999999999999999999864
No 15
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=97.69 E-value=2.2e-05 Score=92.87 Aligned_cols=59 Identities=32% Similarity=0.713 Sum_probs=54.1
Q ss_pred hccCCCCCHHHHHHHHHHHHhcCCCHHHH-HhhcCCCChhHHHHHhhhcccCcChHHHHh
Q 000304 719 RAMINPWTSEEREIFVDKLATFGKDFRKI-ASFLNYKTTADCVEFYYKNHKSDCFEKLKK 777 (1697)
Q Consensus 719 rq~in~WTEEEkeIF~EKYlqhPKnFGKI-As~Lp~KTvaDCVlyYYltKK~~nYKkLlR 777 (1697)
|+.+..|+.-|..+|.+++-.|+|+|.-| +.|||-|+..+.|+|||+||-+..|-+-.|
T Consensus 282 RDemEEWSasEanLFEeALeKyGKDFndIrqdfLPWKSl~sIveyYYmwKttdRYvqqKr 341 (693)
T KOG3554|consen 282 RDEMEEWSASEANLFEEALEKYGKDFNDIRQDFLPWKSLTSIVEYYYMWKTTDRYVQQKR 341 (693)
T ss_pred hhhhhhccchhhHHHHHHHHHhcccHHHHHHhhcchHHHHHHHHHHHHHhhhhHHHHHHh
Confidence 35677899999999999999999999999 999999999999999999999999966544
No 16
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=97.49 E-value=0.00033 Score=81.88 Aligned_cols=55 Identities=31% Similarity=0.507 Sum_probs=49.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCChHHHHh-HhCCCCHHHHHHHHHHHHHHhCCCcccc
Q 000304 939 SDWTDEEKSIFIQAVTSYGKDFSMIAR-CIRTRSRDQCKVFFSKARKCLGLDLIHT 993 (1697)
Q Consensus 939 srWTdEEkelFleaL~kYGKDWkaIA~-~VGTKTv~QcK~FY~kyRKRlnLD~il~ 993 (1697)
..|+++|-..|-+||+.|||||..|.+ .|.|||+.-|..|||-|||.-+-|...+
T Consensus 278 ~~wsEeEcr~FEegl~~yGKDF~lIr~nkvrtRsvgElVeyYYlWKkSeryd~~~q 333 (445)
T KOG4329|consen 278 SGWSEEECRNFEEGLELYGKDFHLIRANKVRTRSVGELVEYYYLWKKSERYDVFAQ 333 (445)
T ss_pred ccCCHHHHHHHHHHHHHhcccHHHHHhcccccchHHHHHHHHHHhhcCcchhhHhh
Confidence 789999999999999999999999987 8999999999999999998766665443
No 17
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=97.43 E-value=0.00013 Score=87.20 Aligned_cols=42 Identities=26% Similarity=0.748 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCChHHHHhHhCCCCHHHHHHHHH
Q 000304 939 SDWTDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFS 980 (1697)
Q Consensus 939 srWTdEEkelFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~ 980 (1697)
..||.+|.-+.++|+..||-||.+||++|||||+.||.-+|-
T Consensus 280 k~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL 321 (531)
T COG5259 280 KNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFL 321 (531)
T ss_pred ccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHH
Confidence 589999999999999999999999999999999999998774
No 18
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=97.36 E-value=0.00014 Score=86.51 Aligned_cols=58 Identities=28% Similarity=0.452 Sum_probs=53.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChHHHHhHhCCCCHHHHHHHHHHHHHHhCCCccccCC
Q 000304 938 PSDWTDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSKARKCLGLDLIHTGR 995 (1697)
Q Consensus 938 ssrWTdEEkelFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~kyRKRlnLD~il~e~ 995 (1697)
..+||.||+.+|-+|+..|||+|.+|.+++..|+.+-++.|||.++|.+.-+..+-..
T Consensus 187 ~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~~~~~s~~~~h 244 (534)
T KOG1194|consen 187 PDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKTREYDSQMNRH 244 (534)
T ss_pred cccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999998877765544
No 19
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.30 E-value=0.0003 Score=83.79 Aligned_cols=48 Identities=27% Similarity=0.574 Sum_probs=45.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-ChHHHHhHhCCCCHHHHHHHHHHHHHH
Q 000304 938 PSDWTDEEKSIFIQAVTSYGK-DFSMIARCIRTRSRDQCKVFFSKARKC 985 (1697)
Q Consensus 938 ssrWTdEEkelFleaL~kYGK-DWkaIA~~VGTKTv~QcK~FY~kyRKR 985 (1697)
...||.+|--++++|+.+||- ||.-||++|||||-.+||.||.|+.-.
T Consensus 72 ~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv~ 120 (438)
T KOG0457|consen 72 DPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFVN 120 (438)
T ss_pred CCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHhc
Confidence 478999999999999999999 999999999999999999999999743
No 20
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=97.14 E-value=0.00058 Score=60.47 Aligned_cols=41 Identities=32% Similarity=0.718 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHhcCCCHHHHHhhcCCCChhHHHHHhhh
Q 000304 725 WTSEEREIFVDKLATFGKDFRKIASFLNYKTTADCVEFYYK 765 (1697)
Q Consensus 725 WTEEEkeIF~EKYlqhPKnFGKIAs~Lp~KTvaDCVlyYYl 765 (1697)
||+||-++.++.+..|+.+|..||.+|+.||..+|...|+.
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~ 41 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRN 41 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999976
No 21
>PLN03212 Transcription repressor MYB5; Provisional
Probab=97.04 E-value=0.0019 Score=73.10 Aligned_cols=47 Identities=19% Similarity=0.352 Sum_probs=43.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCChHHHHhHhCCCCHHHHHHHHHHHHHH
Q 000304 939 SDWTDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSKARKC 985 (1697)
Q Consensus 939 srWTdEEkelFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~kyRKR 985 (1697)
..||.||-++.++....||..|..||+.+..||..|||++|+.+-++
T Consensus 79 gpWT~EED~lLlel~~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK 125 (249)
T PLN03212 79 GGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRK 125 (249)
T ss_pred CCCChHHHHHHHHHHHhccccHHHHHhhcCCCCHHHHHHHHHHHHhH
Confidence 78999999999999999999999999999999999999999877443
No 22
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=96.90 E-value=0.0011 Score=81.16 Aligned_cols=44 Identities=30% Similarity=0.706 Sum_probs=41.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChHHHHhHhCCCCHHHHHHHHH
Q 000304 937 DPSDWTDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFS 980 (1697)
Q Consensus 937 ~ssrWTdEEkelFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~ 980 (1697)
....||++|..+.++|+..||-||.+||.+|||||..||.-+|-
T Consensus 252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL 295 (506)
T KOG1279|consen 252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFL 295 (506)
T ss_pred CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHH
Confidence 35889999999999999999999999999999999999997764
No 23
>PLN03091 hypothetical protein; Provisional
Probab=96.63 E-value=0.0053 Score=73.92 Aligned_cols=45 Identities=18% Similarity=0.384 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChHHHHhHhCCCCHHHHHHHHHHH
Q 000304 938 PSDWTDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSKA 982 (1697)
Q Consensus 938 ssrWTdEEkelFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~ky 982 (1697)
...||.||-.+.++...+||..|..||++|..||..|||++|+..
T Consensus 67 KgpWT~EED~lLLeL~k~~GnKWskIAk~LPGRTDnqIKNRWnsl 111 (459)
T PLN03091 67 RGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSC 111 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCcchHHHHHhcCCCCHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999988865
No 24
>PLN03212 Transcription repressor MYB5; Provisional
Probab=96.41 E-value=0.0048 Score=69.88 Aligned_cols=47 Identities=17% Similarity=0.388 Sum_probs=42.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC-ChHHHHhHhC-CCCHHHHHHHHHHHH
Q 000304 937 DPSDWTDEEKSIFIQAVTSYGK-DFSMIARCIR-TRSRDQCKVFFSKAR 983 (1697)
Q Consensus 937 ~ssrWTdEEkelFleaL~kYGK-DWkaIA~~VG-TKTv~QcK~FY~kyR 983 (1697)
...+||.||=++.++++.+||. +|..||+.++ .||..|||.=|.+|-
T Consensus 24 KRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L 72 (249)
T PLN03212 24 KRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYL 72 (249)
T ss_pred cCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhh
Confidence 3689999999999999999995 8999999996 899999999888883
No 25
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=96.11 E-value=0.0051 Score=75.54 Aligned_cols=50 Identities=22% Similarity=0.593 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChHHH----------HhHhCCCCHHHHHHHHHHHHHHhC
Q 000304 938 PSDWTDEEKSIFIQAVTSYGKDFSMI----------ARCIRTRSRDQCKVFFSKARKCLG 987 (1697)
Q Consensus 938 ssrWTdEEkelFleaL~kYGKDWkaI----------A~~VGTKTv~QcK~FY~kyRKRln 987 (1697)
..-||-.|.+-|..||++|||||.+| -.-+..||-.|++.|||+-..+++
T Consensus 88 ktaWt~~E~~~Ffdal~~~GKdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~ 147 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVGKDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMN 147 (782)
T ss_pred ccccchhhHHHHHHHHHHhcccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHH
Confidence 36899999999999999999999998 445678999999999888766654
No 26
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=95.60 E-value=0.023 Score=52.00 Aligned_cols=43 Identities=16% Similarity=0.363 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCC-CH---HHHHhhcC-CC-ChhHHHHHhh
Q 000304 722 INPWTSEEREIFVDKLATFGK-DF---RKIASFLN-YK-TTADCVEFYY 764 (1697)
Q Consensus 722 in~WTEEEkeIF~EKYlqhPK-nF---GKIAs~Lp-~K-TvaDCVlyYY 764 (1697)
.-.||+|||..|++++..++. ++ .+|++.+. .+ |..+|--|+-
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~Q 51 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQ 51 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHH
Confidence 347999999999999999999 99 99999887 56 8999988874
No 27
>PLN03091 hypothetical protein; Provisional
Probab=95.55 E-value=0.015 Score=70.34 Aligned_cols=46 Identities=20% Similarity=0.446 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-ChHHHHhHhC-CCCHHHHHHHHHHHH
Q 000304 938 PSDWTDEEKSIFIQAVTSYGK-DFSMIARCIR-TRSRDQCKVFFSKAR 983 (1697)
Q Consensus 938 ssrWTdEEkelFleaL~kYGK-DWkaIA~~VG-TKTv~QcK~FY~kyR 983 (1697)
..+||.||=++.++++.+||. +|..||+.+| .||..|||.=|.+|-
T Consensus 14 Kg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyL 61 (459)
T PLN03091 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhcc
Confidence 478999999999999999997 8999999997 899999998887773
No 28
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=95.36 E-value=0.013 Score=70.54 Aligned_cols=51 Identities=29% Similarity=0.602 Sum_probs=45.8
Q ss_pred CCCcccCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHh-HhCCCCHHHHHHHHHHHH
Q 000304 927 TCSDESCGEMDPSDWTDEEKSIFIQAVTSYGKDFSMIAR-CIRTRSRDQCKVFFSKAR 983 (1697)
Q Consensus 927 t~Sd~S~gEm~ssrWTdEEkelFleaL~kYGKDWkaIA~-~VGTKTv~QcK~FY~kyR 983 (1697)
+|-| || ..|+.-|..+|.+||.+|||||.-|-+ ++.=|+..-|.+|||-||
T Consensus 280 LCRD----em--EEWSasEanLFEeALeKyGKDFndIrqdfLPWKSl~sIveyYYmwK 331 (693)
T KOG3554|consen 280 LCRD----EM--EEWSASEANLFEEALEKYGKDFNDIRQDFLPWKSLTSIVEYYYMWK 331 (693)
T ss_pred eehh----hh--hhccchhhHHHHHHHHHhcccHHHHHHhhcchHHHHHHHHHHHHHh
Confidence 5555 55 789999999999999999999999865 899999999999999885
No 29
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=95.02 E-value=0.033 Score=65.98 Aligned_cols=47 Identities=32% Similarity=0.559 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChHHHHhHhCCCCHHHHHHHHHHHH
Q 000304 937 DPSDWTDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSKAR 983 (1697)
Q Consensus 937 ~ssrWTdEEkelFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~kyR 983 (1697)
+..+||.+|+++|.+||...|-||..|+.+..+|..-|||.-|.+--
T Consensus 364 ~~~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Ee 410 (507)
T COG5118 364 GALRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEE 410 (507)
T ss_pred CCCcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHh
Confidence 35899999999999999999999999999999999999997666553
No 30
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=94.81 E-value=0.048 Score=63.64 Aligned_cols=47 Identities=21% Similarity=0.483 Sum_probs=44.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-ChHHHHhHhCCCCHHHHHHHHHHHHH
Q 000304 938 PSDWTDEEKSIFIQAVTSYGK-DFSMIARCIRTRSRDQCKVFFSKARK 984 (1697)
Q Consensus 938 ssrWTdEEkelFleaL~kYGK-DWkaIA~~VGTKTv~QcK~FY~kyRK 984 (1697)
-..|+.+|-.+|++|+..-|- +|.-||+.||+++-.-||+||.|+.-
T Consensus 63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~ 110 (432)
T COG5114 63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD 110 (432)
T ss_pred CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 388999999999999999998 99999999999999999999999863
No 31
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=92.82 E-value=0.14 Score=62.50 Aligned_cols=54 Identities=19% Similarity=0.469 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCHHHHHhhcCCCChhHHHHHhhhcccCcChHHHHh
Q 000304 724 PWTSEEREIFVDKLATFGKDFRKIASFLNYKTTADCVEFYYKNHKSDCFEKLKK 777 (1697)
Q Consensus 724 ~WTEEEkeIF~EKYlqhPKnFGKIAs~Lp~KTvaDCVlyYYltKK~~nYKkLlR 777 (1697)
+||.+|--+..++.-.|+.+|-+||.++++||+.+||+++-.---.++|.....
T Consensus 281 ~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~LPieD~~l~k~~ 334 (531)
T COG5259 281 NWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQLPIEDNYLSKGD 334 (531)
T ss_pred cccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcCCcchhhhhccc
Confidence 899999999999999999999999999999999999999977766666654443
No 32
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=92.25 E-value=0.26 Score=55.41 Aligned_cols=49 Identities=24% Similarity=0.452 Sum_probs=44.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChHHHHhHhCCCCHHHHHHHHHHH-HHHh
Q 000304 938 PSDWTDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSKA-RKCL 986 (1697)
Q Consensus 938 ssrWTdEEkelFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~ky-RKRl 986 (1697)
...||+||-.+-+++=.+||--|..||+.++.||---||+|...+ |||+
T Consensus 62 rg~fT~eEe~~Ii~lH~~~GNrWs~IA~~LPGRTDNeIKN~Wnt~lkkkl 111 (238)
T KOG0048|consen 62 RGNFSDEEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNHWNTHLKKKL 111 (238)
T ss_pred CCCCCHHHHHHHHHHHHHHCcHHHHHHhhCCCcCHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999998666 5554
No 33
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=92.08 E-value=0.18 Score=63.31 Aligned_cols=45 Identities=31% Similarity=0.719 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CChHHHHhHhCCCCHHHHHHHHHHH
Q 000304 938 PSDWTDEEKSIFIQAVTSYG-KDFSMIARCIRTRSRDQCKVFFSKA 982 (1697)
Q Consensus 938 ssrWTdEEkelFleaL~kYG-KDWkaIA~~VGTKTv~QcK~FY~ky 982 (1697)
..+||++|-.+.+.|+.+|| |||.+|-..|.+++-+|||.-|.+-
T Consensus 360 hg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nv 405 (939)
T KOG0049|consen 360 HGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNV 405 (939)
T ss_pred CCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHH
Confidence 38999999999999999995 5999999999999999999877664
No 34
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=90.81 E-value=0.16 Score=63.11 Aligned_cols=48 Identities=35% Similarity=0.637 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCHHHH----------HhhcCCCChhHHHHHhhhcccC
Q 000304 722 INPWTSEEREIFVDKLATFGKDFRKI----------ASFLNYKTTADCVEFYYKNHKS 769 (1697)
Q Consensus 722 in~WTEEEkeIF~EKYlqhPKnFGKI----------As~Lp~KTvaDCVlyYYltKK~ 769 (1697)
...||-+|.+.|.+++.+|+|+|.+| -+...-||.-+.-.|||+..+.
T Consensus 88 ktaWt~~E~~~Ffdal~~~GKdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~ 145 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVGKDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRR 145 (782)
T ss_pred ccccchhhHHHHHHHHHHhcccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHH
Confidence 45899999999999999999999999 3334567888888888875443
No 35
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=90.15 E-value=0.38 Score=59.83 Aligned_cols=56 Identities=18% Similarity=0.441 Sum_probs=48.8
Q ss_pred ccCCCCCHHHHHHHHHHHHhcCCCHHHHHhhcCCCChhHHHHHhhhcccCcChHHH
Q 000304 720 AMINPWTSEEREIFVDKLATFGKDFRKIASFLNYKTTADCVEFYYKNHKSDCFEKL 775 (1697)
Q Consensus 720 q~in~WTEEEkeIF~EKYlqhPKnFGKIAs~Lp~KTvaDCVlyYYltKK~~nYKkL 775 (1697)
.....||++|--+-.++...|+-+|.+||.+++.||..+||.++-.-=..+.|..-
T Consensus 251 ~~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~LPieD~~l~~ 306 (506)
T KOG1279|consen 251 SARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRLPIEDPYLAK 306 (506)
T ss_pred cCCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhcCccchhhhh
Confidence 45568999999999999999999999999999999999999999665555555444
No 36
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=86.28 E-value=1.1 Score=60.16 Aligned_cols=50 Identities=20% Similarity=0.399 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC-ChHHHHhHhCCCCHHHHHHHHHHHHHHh
Q 000304 937 DPSDWTDEEKSIFIQAVTSYGK-DFSMIARCIRTRSRDQCKVFFSKARKCL 986 (1697)
Q Consensus 937 ~ssrWTdEEkelFleaL~kYGK-DWkaIA~~VGTKTv~QcK~FY~kyRKRl 986 (1697)
+=..||..+-..|+.|..+||| |+.+||..|++||+..|+.|+..+-+|+
T Consensus 823 gf~~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y~~~f~~~~ 873 (1033)
T PLN03142 823 GFSTWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFWERY 873 (1033)
T ss_pred CcCcccHHHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 4478999999999999999999 7999999999999999998766665553
No 37
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=86.26 E-value=0.83 Score=55.76 Aligned_cols=43 Identities=30% Similarity=0.720 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHHhcC-CCHHHHHhhcCCCChhHHHHHhhhc
Q 000304 724 PWTSEEREIFVDKLATFG-KDFRKIASFLNYKTTADCVEFYYKN 766 (1697)
Q Consensus 724 ~WTEEEkeIF~EKYlqhP-KnFGKIAs~Lp~KTvaDCVlyYYlt 766 (1697)
.||.+|-=+|+++..+|+ -||+-||.+++.||-.+|..||+..
T Consensus 74 ~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~ 117 (438)
T KOG0457|consen 74 SWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKH 117 (438)
T ss_pred CCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHH
Confidence 699999999999999998 7999999999999999999999753
No 38
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=83.36 E-value=1.1 Score=55.53 Aligned_cols=45 Identities=29% Similarity=0.546 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-ChHHHHhHhCCCCHHHHHHHHHHH
Q 000304 938 PSDWTDEEKSIFIQAVTSYGK-DFSMIARCIRTRSRDQCKVFFSKA 982 (1697)
Q Consensus 938 ssrWTdEEkelFleaL~kYGK-DWkaIA~~VGTKTv~QcK~FY~ky 982 (1697)
..-|+..|-++..-|+.+||+ -|..|+..+..||..||++=|++|
T Consensus 7 ggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ 52 (617)
T KOG0050|consen 7 GGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEW 52 (617)
T ss_pred cceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 367999999999999999999 599999999999999999888887
No 39
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=78.92 E-value=2.2 Score=48.13 Aligned_cols=45 Identities=22% Similarity=0.498 Sum_probs=41.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-ChHHHHhHhC-CCCHHHHHHHHHHH
Q 000304 938 PSDWTDEEKSIFIQAVTSYGK-DFSMIARCIR-TRSRDQCKVFFSKA 982 (1697)
Q Consensus 938 ssrWTdEEkelFleaL~kYGK-DWkaIA~~VG-TKTv~QcK~FY~ky 982 (1697)
...||.||=++.++-+.+||. +|..|++.+| .|+-.|||-=..+|
T Consensus 9 kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~Ny 55 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNY 55 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcc
Confidence 389999999999999999999 6999999999 99999999777777
No 40
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=76.54 E-value=3.1 Score=39.29 Aligned_cols=50 Identities=26% Similarity=0.495 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHHHHHH------hC--------CChHHHHhHhC----CCCHHHHHHHHHHHHHHhCC
Q 000304 939 SDWTDEEKSIFIQAVTS------YG--------KDFSMIARCIR----TRSRDQCKVFFSKARKCLGL 988 (1697)
Q Consensus 939 srWTdEEkelFleaL~k------YG--------KDWkaIA~~VG----TKTv~QcK~FY~kyRKRlnL 988 (1697)
..||++|...|++.... |+ .-|..||..+. .+|..||+.=+.+-++++.-
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~ 69 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKK 69 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 47999999999998777 32 15999999764 69999999777666666543
No 41
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=75.32 E-value=3.6 Score=52.48 Aligned_cols=49 Identities=24% Similarity=0.359 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-ChHHHHhHhCCCCHHH---HHHHHHHHHHHh
Q 000304 938 PSDWTDEEKSIFIQAVTSYGK-DFSMIARCIRTRSRDQ---CKVFFSKARKCL 986 (1697)
Q Consensus 938 ssrWTdEEkelFleaL~kYGK-DWkaIA~~VGTKTv~Q---cK~FY~kyRKRl 986 (1697)
..+||-.|-+..+.++.+||+ .|.+||.++|.||-.| ||.-|-.+++++
T Consensus 412 ~~rW~l~edeqL~~~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~~~k~rl 464 (939)
T KOG0049|consen 412 VERWTLVEDEQLLYAVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRLIAAKLRL 464 (939)
T ss_pred cCceeecchHHHHHHHHHHccchHHHHHHHccccchhHHHHHHHHHHHHHHHH
Confidence 489999999999999999999 8999999999999955 555566666655
No 42
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=70.40 E-value=4.5 Score=51.61 Aligned_cols=48 Identities=23% Similarity=0.471 Sum_probs=40.5
Q ss_pred CCCCCCHHHHHHHHHHHH-------Hh-------------------CCChHHHHhHhCCCCHHHHHHHHHHHHH
Q 000304 937 DPSDWTDEEKSIFIQAVT-------SY-------------------GKDFSMIARCIRTRSRDQCKVFFSKARK 984 (1697)
Q Consensus 937 ~ssrWTdEEkelFleaL~-------kY-------------------GKDWkaIA~~VGTKTv~QcK~FY~kyRK 984 (1697)
+..+||-+|-+..++.+. +| +-+|..|++++|||+..|||..|++--.
T Consensus 435 ~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~ 508 (607)
T KOG0051|consen 435 NRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTT 508 (607)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHh
Confidence 358999999999999984 44 3479999999999999999988777643
No 43
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=69.34 E-value=13 Score=34.94 Aligned_cols=48 Identities=25% Similarity=0.348 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHHHHHHHh-----C------------CChHHHHhHh-----CCCCHHHHHHHHHHHHHHh
Q 000304 939 SDWTDEEKSIFIQAVTSY-----G------------KDFSMIARCI-----RTRSRDQCKVFFSKARKCL 986 (1697)
Q Consensus 939 srWTdEEkelFleaL~kY-----G------------KDWkaIA~~V-----GTKTv~QcK~FY~kyRKRl 986 (1697)
.+||.+|..++++-+.+| | +-|..|+..+ +.||..|+|..|.+++...
T Consensus 3 ~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~ 72 (78)
T PF13873_consen 3 PNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKA 72 (78)
T ss_pred CCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence 689999999999988887 4 3588898866 3799999999999997654
No 44
>PLN03162 golden-2 like transcription factor; Provisional
Probab=65.37 E-value=12 Score=45.45 Aligned_cols=49 Identities=27% Similarity=0.335 Sum_probs=40.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC---hHHHHhHhC--CCCHHHHHHHHHHHHHHh
Q 000304 938 PSDWTDEEKSIFIQAVTSYGKD---FSMIARCIR--TRSRDQCKVFFSKARKCL 986 (1697)
Q Consensus 938 ssrWTdEEkelFleaL~kYGKD---WkaIA~~VG--TKTv~QcK~FY~kyRKRl 986 (1697)
.-+||.|=|++|++|+.+-|-+ =++|=++++ .=|..+||+|.||||-.+
T Consensus 237 RLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~r 290 (526)
T PLN03162 237 KVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHR 290 (526)
T ss_pred cccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhc
Confidence 4799999999999999999943 344777766 579999999999998543
No 45
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=65.04 E-value=13 Score=35.64 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHHHh----CC---------ChHHHHhHh----C-CCCHHHHHHHHHHHHHHhCCCcccc
Q 000304 940 DWTDEEKSIFIQAVTSY----GK---------DFSMIARCI----R-TRSRDQCKVFFSKARKCLGLDLIHT 993 (1697)
Q Consensus 940 rWTdEEkelFleaL~kY----GK---------DWkaIA~~V----G-TKTv~QcK~FY~kyRKRlnLD~il~ 993 (1697)
+||+++...|++.|.+. .+ .|..|++.+ | ..|..||++.|...|+.+.+=.-|.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~~~~~l~ 72 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDYRIWKELR 72 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999988665 22 277777644 3 4799999999999999987766444
No 46
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=60.34 E-value=2.7 Score=49.08 Aligned_cols=44 Identities=14% Similarity=-0.058 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCChHHHHhHhCCCCHHHHHHHHHHH
Q 000304 939 SDWTDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSKA 982 (1697)
Q Consensus 939 srWTdEEkelFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~ky 982 (1697)
.+||.+++..|.++|..|++.|..|-.+++.++..|++.+.+.|
T Consensus 54 ~~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 97 (335)
T KOG0724|consen 54 PRRTPDSWDKFAEALPLEKRLEDKIEEYIGLVFDVNIRESGQKP 97 (335)
T ss_pred cccchhhhhHHHhcCccccccchhHHhhhhhHHHHhhhhccCCC
Confidence 56999999999999999999999999999999999999764444
No 47
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=55.26 E-value=15 Score=44.95 Aligned_cols=62 Identities=21% Similarity=0.363 Sum_probs=48.8
Q ss_pred eecCC---CCCcchHHHHhhhccCCCCCHHHHHHHHHHHHhcCCCHHHHHhhcCCCChhHHHHHhhh
Q 000304 702 FISSN---GLVEDPCAVEKERAMINPWTSEEREIFVDKLATFGKDFRKIASFLNYKTTADCVEFYYK 765 (1697)
Q Consensus 702 FiDtN---gLVeDP~avyKerq~in~WTEEEkeIF~EKYlqhPKnFGKIAs~Lp~KTvaDCVlyYYl 765 (1697)
+++.| .+|+ .+.|..++....||.+|.+.|-.++-+++-+|.+|++.+|.|.-.+.-.-|-.
T Consensus 344 ~veen~~ar~vt--s~t~g~~~~~~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~ 408 (507)
T COG5118 344 VVEENPFARIVT--SSTFGKKKGALRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIK 408 (507)
T ss_pred Hhhccchhheee--cccccCCCCCCcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHH
Confidence 45555 3332 23455668888999999999999999999999999999999988777665533
No 48
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=55.21 E-value=9.7 Score=48.58 Aligned_cols=46 Identities=33% Similarity=0.616 Sum_probs=42.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChHHHHhHhCCCCHHHHHHHHHHH
Q 000304 937 DPSDWTDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSKA 982 (1697)
Q Consensus 937 ~ssrWTdEEkelFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~ky 982 (1697)
...+||-.|.++|.+++..+|-+|..|+.+-..|+..|||.=|.+=
T Consensus 408 ~~~~w~~se~e~fyka~~~~gs~~slis~l~p~R~rk~iK~K~~~e 453 (584)
T KOG2009|consen 408 ETDKWDASETELFYKALSERGSDFSLISNLFPLRDRKQIKAKFKKE 453 (584)
T ss_pred ccCcccchhhHHhhhHHhhhcccccccccccccccHHHHHHHHhhh
Confidence 4699999999999999999999999999999999999999655544
No 49
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=48.86 E-value=23 Score=45.63 Aligned_cols=47 Identities=21% Similarity=0.389 Sum_probs=41.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChHHHHhHhCCCCHHHHHHHHHHHHH
Q 000304 937 DPSDWTDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSKARK 984 (1697)
Q Consensus 937 ~ssrWTdEEkelFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~kyRK 984 (1697)
....||.+|-+....-..++|.+|..|+++||+ ....|+..+..|.+
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g~~W~~Ig~~lgr-~P~~crd~wr~~~~ 429 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHGNDWKEIGKALGR-MPMDCRDRWRQYVK 429 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhcccHHHHHHHHcc-CcHHHHHHHHHhhc
Confidence 358999999999999999999999999999964 56779988888763
No 50
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=41.40 E-value=97 Score=37.71 Aligned_cols=50 Identities=20% Similarity=0.458 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHHHHh-CC---ChHHHHhHhCCCCHHHHHHHHHHHHHHh
Q 000304 937 DPSDWTDEEKSIFIQAVTSY-GK---DFSMIARCIRTRSRDQCKVFFSKARKCL 986 (1697)
Q Consensus 937 ~ssrWTdEEkelFleaL~kY-GK---DWkaIA~~VGTKTv~QcK~FY~kyRKRl 986 (1697)
+...||..|+...+.+|... |. |..-|++.|..|+.++|++|-+.-|.|.
T Consensus 20 gp~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~~l~~Rs~aEI~~fl~~LK~rv 73 (344)
T PF11035_consen 20 GPAAWSAREKRQLLRLLQARRGQPEPDAAELAKELPGRSEAEIRDFLQQLKGRV 73 (344)
T ss_pred CcccCcHHHHHHHHHHHHHhcCCCCcCHHHHHhhccCcCHHHHHHHHHHHHHHH
Confidence 36899999999999888765 65 5556888899999999999999887664
No 51
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=38.02 E-value=45 Score=30.18 Aligned_cols=44 Identities=25% Similarity=0.355 Sum_probs=38.7
Q ss_pred HHHHHHHHHhCCChHHHHhHhCCCCHHHHHHHHHHHHHHhCCCc
Q 000304 947 SIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSKARKCLGLDL 990 (1697)
Q Consensus 947 elFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~kyRKRlnLD~ 990 (1697)
+++.+|+...|.|=..|-+++.+++..|.+.-+..|++.+|-+.
T Consensus 4 ~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L 47 (66)
T PF00191_consen 4 ELLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDL 47 (66)
T ss_dssp HHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-H
T ss_pred HHHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHHH
Confidence 37888999999999999999999999999999999999887553
No 52
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=33.00 E-value=32 Score=44.83 Aligned_cols=42 Identities=29% Similarity=0.434 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCChHHHHhHhCCCCHHHHHHHHH
Q 000304 939 SDWTDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFS 980 (1697)
Q Consensus 939 srWTdEEkelFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~ 980 (1697)
.-|+-.|+.+|..+...||.++-.|++.++|||--||-+|-+
T Consensus 410 ~ew~~~ek~~fr~~~~~~~~n~c~Iar~l~~ktC~~v~~~~~ 451 (739)
T KOG1079|consen 410 VEWNGAEKVLFRVGSTLYGTNRCSIARNLLTKTCRQVYEYEQ 451 (739)
T ss_pred cccchhhhHHHHhccccccchhhHHHHHhcchHHHHHHHHhh
Confidence 489999999999999999999999999999999999988755
No 53
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=31.69 E-value=69 Score=34.81 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChHHHHhHhC----CCCHHHHHHHHHHHHH
Q 000304 938 PSDWTDEEKSIFIQAVTSYGKDFSMIARCIR----TRSRDQCKVFFSKARK 984 (1697)
Q Consensus 938 ssrWTdEEkelFleaL~kYGKDWkaIA~~VG----TKTv~QcK~FY~kyRK 984 (1697)
.-+=|..|.......+.+||-||.+++.-.. -.|..||+.-+.+|++
T Consensus 114 ~~~ls~~e~~~i~~Li~KhGdDy~aMarD~KLN~~Q~T~~qlrrki~~~k~ 164 (164)
T PF09420_consen 114 PRRLSEREIEYIEYLIEKHGDDYKAMARDRKLNYMQHTPGQLRRKIRKYKK 164 (164)
T ss_pred CCCCCHHHHHHHHHHHHHHCccHHHHhccCCCCcccCCHHHHHHHHHHhcC
Confidence 3666788888888899999999999999888 3899999988888863
No 54
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=30.85 E-value=45 Score=42.52 Aligned_cols=44 Identities=30% Similarity=0.593 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCHHHHHhhcCCCChhHHHHHhhh
Q 000304 722 INPWTSEEREIFVDKLATFGKDFRKIASFLNYKTTADCVEFYYK 765 (1697)
Q Consensus 722 in~WTEEEkeIF~EKYlqhPKnFGKIAs~Lp~KTvaDCVlyYYl 765 (1697)
.-.||++|-++-.+-+.++|=.|-.||..++.+|...||..|-.
T Consensus 72 ~~~~~~eed~~li~l~~~~~~~wstia~~~d~rt~~~~~ery~~ 115 (512)
T COG5147 72 KKNWSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVN 115 (512)
T ss_pred cccccHHHHHHHHHHHHhcCchhhhhccccCccchHHHHHHHHH
Confidence 34799999999999999999999999999999999999999963
No 55
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=29.61 E-value=50 Score=42.10 Aligned_cols=47 Identities=23% Similarity=0.451 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChHHHHhHhCCCCHHHHHHHHHHHHH
Q 000304 938 PSDWTDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSKARK 984 (1697)
Q Consensus 938 ssrWTdEEkelFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~kyRK 984 (1697)
...|+++|-...+..=.++|--|..||.+|+.+|..||.+.|.+--.
T Consensus 72 ~~~~~~eed~~li~l~~~~~~~wstia~~~d~rt~~~~~ery~~~~~ 118 (512)
T COG5147 72 KKNWSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVNTLE 118 (512)
T ss_pred cccccHHHHHHHHHHHHhcCchhhhhccccCccchHHHHHHHHHHhh
Confidence 48899999999999999999999999999999999999999886643
No 56
>PF05263 DUF722: Protein of unknown function (DUF722); InterPro: IPR007927 This entry is represented by Bacteriophage bIL285, Orf38. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=28.63 E-value=99 Score=33.29 Aligned_cols=47 Identities=17% Similarity=0.199 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHHHh-CCChHHHHhHhCCCCHHHHHHHHHHHHHHh
Q 000304 939 SDWTDEEKSIFIQAVTSY-GKDFSMIARCIRTRSRDQCKVFFSKARKCL 986 (1697)
Q Consensus 939 srWTdEEkelFleaL~kY-GKDWkaIA~~VGTKTv~QcK~FY~kyRKRl 986 (1697)
..++++++.+|.-=...+ |..|-.||..+. .+..||+..++.+|..+
T Consensus 80 ~~l~de~k~Ii~lry~~r~~~TW~~IA~~l~-i~erta~r~~~~fK~~i 127 (130)
T PF05263_consen 80 ETLIDEEKRIIKLRYDRRSRRTWYQIAQKLH-ISERTARRWRDRFKNDI 127 (130)
T ss_pred HhhCHHHHHHHHHHHcccccchHHHHHHHhC-ccHHHHHHHHHHHHHHh
Confidence 678899999997777777 678999999994 99999999999988643
No 57
>PF05263 DUF722: Protein of unknown function (DUF722); InterPro: IPR007927 This entry is represented by Bacteriophage bIL285, Orf38. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=25.45 E-value=53 Score=35.26 Aligned_cols=48 Identities=13% Similarity=0.156 Sum_probs=41.6
Q ss_pred cCCCCCHHHHHHHHHHHHhc-CCCHHHHHhhcCCCChhHHHHHhhhcccC
Q 000304 721 MINPWTSEEREIFVDKLATF-GKDFRKIASFLNYKTTADCVEFYYKNHKS 769 (1697)
Q Consensus 721 ~in~WTEEEkeIF~EKYlqh-PKnFGKIAs~Lp~KTvaDCVlyYYltKK~ 769 (1697)
++..++++++++|.-+|..+ ...|-.||..|. .+...|..+|+..|..
T Consensus 78 ~~~~l~de~k~Ii~lry~~r~~~TW~~IA~~l~-i~erta~r~~~~fK~~ 126 (130)
T PF05263_consen 78 WLETLIDEEKRIIKLRYDRRSRRTWYQIAQKLH-ISERTARRWRDRFKND 126 (130)
T ss_pred HHHhhCHHHHHHHHHHHcccccchHHHHHHHhC-ccHHHHHHHHHHHHHH
Confidence 44579999999999999999 778999999886 8999999999886653
No 58
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=25.04 E-value=1.6e+02 Score=25.71 Aligned_cols=43 Identities=26% Similarity=0.340 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHHhCCChHHHHhHhCCCCHHHHHHHHHHHHHHh
Q 000304 942 TDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSKARKCL 986 (1697)
Q Consensus 942 TdEEkelFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~kyRKRl 986 (1697)
++.++.+|.. .-..|..|..||+.+| -|+..|+..+++-++++
T Consensus 12 ~~~~r~i~~l-~~~~g~s~~eIa~~l~-~s~~~v~~~l~ra~~~L 54 (54)
T PF08281_consen 12 PERQREIFLL-RYFQGMSYAEIAEILG-ISESTVKRRLRRARKKL 54 (54)
T ss_dssp -HHHHHHHHH-HHTS---HHHHHHHCT-S-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHHCcCHHHHHHHHC-cCHHHHHHHHHHHHhhC
Confidence 3455555543 3456999999999997 78999999999888764
No 59
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=24.76 E-value=1e+02 Score=26.56 Aligned_cols=46 Identities=22% Similarity=0.341 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHHHhCCChHHHHhHhCCCCHHHHHHHHHHHHHHhCCCc
Q 000304 942 TDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSKARKCLGLDL 990 (1697)
Q Consensus 942 TdEEkelFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~kyRKRlnLD~ 990 (1697)
+.+++..++..+.. |.....||+.+| -+...|..+...|++ .|++-
T Consensus 3 ~~~~R~~ii~l~~~-G~s~~~ia~~lg-vs~~Tv~~w~kr~~~-~G~~g 48 (50)
T PF13384_consen 3 SEERRAQIIRLLRE-GWSIREIAKRLG-VSRSTVYRWIKRYRE-EGLEG 48 (50)
T ss_dssp -------HHHHHHH-T--HHHHHHHHT-S-HHHHHHHHT----------
T ss_pred chhHHHHHHHHHHC-CCCHHHHHHHHC-cCHHHHHHHHHHccc-ccccc
Confidence 45667778888888 999999999998 566666666666653 55544
No 60
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=24.04 E-value=78 Score=38.45 Aligned_cols=53 Identities=19% Similarity=0.461 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHHHHHhcC-CCHHHHHhhcCCCChhHHHHHhhhcccCcChHHH
Q 000304 723 NPWTSEEREIFVDKLATFG-KDFRKIASFLNYKTTADCVEFYYKNHKSDCFEKL 775 (1697)
Q Consensus 723 n~WTEEEkeIF~EKYlqhP-KnFGKIAs~Lp~KTvaDCVlyYYltKK~~nYKkL 775 (1697)
..|+..|.-+|++..-.-+ -||.-||.+++.|+-.+|-.|||.+=-..+|.-|
T Consensus 64 e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~es~~ypl 117 (432)
T COG5114 64 EGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYDESKYYPL 117 (432)
T ss_pred CCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHhhcccccc
Confidence 4799999999999988665 7999999999999999999999876544444433
No 61
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=23.76 E-value=1.1e+02 Score=36.43 Aligned_cols=39 Identities=31% Similarity=0.519 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHHH-----------HHhCCChHHHHhH---hC-CCCHHHHHHH
Q 000304 939 SDWTDEEKSIFIQAV-----------TSYGKDFSMIARC---IR-TRSRDQCKVF 978 (1697)
Q Consensus 939 srWTdEEkelFleaL-----------~kYGKDWkaIA~~---VG-TKTv~QcK~F 978 (1697)
.+|+.+|-..++++. .+ +..|..||+. .| -||..|||.=
T Consensus 55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k-~~~We~va~k~~~~g~~rs~~qck~K 108 (345)
T KOG4282|consen 55 PRWSEEETLTLIEIRGEMDVALRRGKLK-GPLWEEVARKMAELGYPRSPKQCKAK 108 (345)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhhc-ccHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 899999998888743 23 6679999982 33 6999999953
No 62
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=23.75 E-value=1.5e+02 Score=30.19 Aligned_cols=49 Identities=16% Similarity=0.382 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHHHHHHh----C----CChHHHHhHhCCC-----CHHHHHHHHHHHHHHhC
Q 000304 939 SDWTDEEKSIFIQAVTSY----G----KDFSMIARCIRTR-----SRDQCKVFFSKARKCLG 987 (1697)
Q Consensus 939 srWTdEEkelFleaL~kY----G----KDWkaIA~~VGTK-----Tv~QcK~FY~kyRKRln 987 (1697)
--||+++--.+|+||..| | .||.++...|..+ |..|+..=..+-|+|+.
T Consensus 5 R~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky~ 66 (98)
T PF04504_consen 5 RLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKYR 66 (98)
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHH
Confidence 469999999999999998 8 4787777776543 56666544444455543
No 63
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=23.30 E-value=84 Score=35.95 Aligned_cols=51 Identities=14% Similarity=0.036 Sum_probs=47.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChHHHHhHhCCCCHHHHHHHHHHHHHHhC
Q 000304 937 DPSDWTDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSKARKCLG 987 (1697)
Q Consensus 937 ~ssrWTdEEkelFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~kyRKRln 987 (1697)
...+|+.++...+.+.+.++|-++-.|++.+|.=++.|+..++...++.++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~ 182 (259)
T cd07939 132 DASRADPDFLIEFAEVAQEAGADRLRFADTVGILDPFTTYELIRRLRAATD 182 (259)
T ss_pred cCCCCCHHHHHHHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcC
Confidence 357899999999999999999999999999999999999999999998775
No 64
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=22.32 E-value=1.1e+02 Score=38.02 Aligned_cols=46 Identities=28% Similarity=0.546 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHHHHHHh-----------------CCChHHHHhHhC-----CCCHHHHHHHHHHHHHH
Q 000304 939 SDWTDEEKSIFIQAVTSY-----------------GKDFSMIARCIR-----TRSRDQCKVFFSKARKC 985 (1697)
Q Consensus 939 srWTdEEkelFleaL~kY-----------------GKDWkaIA~~VG-----TKTv~QcK~FY~kyRKR 985 (1697)
.-|+.+=-+.|.+||+.| ||| ..||+.|+ |||..||-+|-|-+.+|
T Consensus 77 gvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRN-ELIarYIKlrtgktRTrKQVSSHIQVlarr 144 (455)
T KOG3841|consen 77 GVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRN-ELIARYIKLRTGKTRTRKQVSSHIQVLARR 144 (455)
T ss_pred cccChhHHHHHHHHHhhcCCCCceeEEEccCccccchH-HHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 789999999999999875 444 45999885 79999999999988544
No 65
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=22.05 E-value=79 Score=40.42 Aligned_cols=46 Identities=28% Similarity=0.510 Sum_probs=41.8
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCC-HHHHHhhcCCCChhHHHHHhhhc
Q 000304 721 MINPWTSEEREIFVDKLATFGKD-FRKIASFLNYKTTADCVEFYYKN 766 (1697)
Q Consensus 721 ~in~WTEEEkeIF~EKYlqhPKn-FGKIAs~Lp~KTvaDCVlyYYlt 766 (1697)
....|+-.|-++..-+-..|+|+ |.+||+-|..||..+|-.-||-|
T Consensus 6 kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ 52 (617)
T KOG0050|consen 6 KGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEW 52 (617)
T ss_pred ecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 34689999999999999999995 89999999999999999999953
No 66
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=21.02 E-value=60 Score=36.07 Aligned_cols=51 Identities=20% Similarity=0.223 Sum_probs=45.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChHHHHhHhCCCCHHHHHHHHHHHHHHhC
Q 000304 937 DPSDWTDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSKARKCLG 987 (1697)
Q Consensus 937 ~ssrWTdEEkelFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~kyRKRln 987 (1697)
...+++.++...|.+.+..+|-|+-.|++.+|.=++.++..++...++.+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~ 180 (237)
T PF00682_consen 130 DASRTDPEELLELAEALAEAGADIIYLADTVGIMTPEDVAELVRALREALP 180 (237)
T ss_dssp TTGGSSHHHHHHHHHHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHST
T ss_pred ccccccHHHHHHHHHHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhcc
Confidence 347899999999999999999999999999999999999999999999887
No 67
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=20.20 E-value=2e+02 Score=27.94 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=25.7
Q ss_pred HHHHHHHhC--------CChHHHHhHhCCCC-----HHHHHHHHHHHH
Q 000304 949 FIQAVTSYG--------KDFSMIARCIRTRS-----RDQCKVFFSKAR 983 (1697)
Q Consensus 949 FleaL~kYG--------KDWkaIA~~VGTKT-----v~QcK~FY~kyR 983 (1697)
+-.++.++| +.|..|++.+|-.+ ..++|.+|.+|-
T Consensus 41 Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~~L~~~Y~~~L 88 (92)
T PF01388_consen 41 LYKAVMKRGGFDKVTKNKKWREVARKLGFPPSSTSAAQQLRQHYEKYL 88 (92)
T ss_dssp HHHHHHHHTSHHHHHHHTTHHHHHHHTTS-TTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCcCcccCcccchHHHHHHHhCCCCCCCcHHHHHHHHHHHHh
Confidence 344555555 67999999998433 478999999984
No 68
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=20.15 E-value=1.1e+02 Score=28.98 Aligned_cols=41 Identities=24% Similarity=0.476 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHHHHhc--C------------CCHHHHHhhcC----CCChhHHHHHh
Q 000304 723 NPWTSEEREIFVDKLATF--G------------KDFRKIASFLN----YKTTADCVEFY 763 (1697)
Q Consensus 723 n~WTEEEkeIF~EKYlqh--P------------KnFGKIAs~Lp----~KTvaDCVlyY 763 (1697)
..||++|-.+|++.+..+ - .-|..||..|. .||..+|-.=+
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw 60 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKW 60 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 479999999999888771 1 14677888875 78888886554
Done!