Query 000304
Match_columns 1697
No_of_seqs 260 out of 434
Neff 3.2
Searched_HMMs 29240
Date Tue Mar 26 15:59:12 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000304.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_84-88//hhsearch_pdb/000304hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xag_B REST corepressor 1; ami 1.0 1 1 276.7 3.2 229 720-998 187-440 (482)
2 4a69_C Nuclear receptor corepr 1.0 1 1 225.5 7.2 93 680-773 2-94 (94)
3 2iw5_B Protein corest, REST co 1.0 1 1 137.7 3.5 66 937-1002 132-197 (235)
4 2eqr_A N-COR1, N-COR, nuclear 1.0 1 1 119.3 6.2 56 716-771 6-61 (61)
5 2crg_A Metastasis associated p 1.0 1 1 119.1 4.6 58 718-775 4-62 (70)
6 2yqk_A Arginine-glutamic acid 1.0 1 1 112.5 5.1 54 720-773 7-61 (63)
7 2iw5_B Protein corest, REST co 1.0 1 1 100.3 6.1 64 716-779 127-190 (235)
8 2ltp_A Nuclear receptor corepr 1.0 1 1 93.7 0.0 60 937-996 15-74 (89)
9 2eqr_A N-COR1, N-COR, nuclear 1.0 1 1 91.7 6.0 50 938-987 12-61 (61)
10 3osg_A MYB21; transcription-DN 1.0 1 1 91.1 12.4 109 720-993 9-117 (126)
No 1
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=1.00 E-value=1 Score=276.66 Aligned_cols=229 Identities=20% Similarity=0.295 Sum_probs=137.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 26999999899999999985498877897330889966787885511567573888831014788977666422224533
Q 000304 720 AMINPWTSEEREIFVDKLATFGKDFRKIASFLNYKTTADCVEFYYKNHKSDCFEKLKKKHDFSKQGKTSTNTYLVTTGKR 799 (1697)
Q Consensus 720 q~in~WTEEEKeIF~EKylqhPKnFGKIAs~Lp~KTvaDCVlfYYltKKs~nYKkLlRk~~lRKRGKss~~tyL~~sGkk 799 (1697)
...+.||++|+++|.++|.+|||+|++|+.+||+|++++||.|||+|||+.+|+.++++ +.+++++.+...
T Consensus 187 p~~d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yYY~WKKt~~yk~l~~~-~~rr~krk~~es-------- 257 (482)
T 2xag_B 187 PFPDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTSVMDR-HARKQKREREES-------- 257 (482)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHH-HHHHCCCCCCCC--------
T ss_conf 54432689999999999998286099999984999789998985364456638999998-876438775544--------
Q ss_pred CCCCCCHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHC---CCCCCC
Q ss_conf 21111001210003469999842013222345654579989987877998843457876668984210000---012232
Q 000304 800 NRKMNAASLDILGEASEIAAAAQVDGRQLISSGRISSGGRGDSRTSLGDDGIIERSSSFDVIGGERETAAA---DVLAGI 876 (1697)
Q Consensus 800 Nre~naaSlDilGaaS~~Aa~A~~a~~~~~sS~~i~s~~~~eskk~e~~d~~~erss~~D~~G~EREtvaA---dvkAgI 876 (1697)
..+. ....+... ..|. + +..+...+++... ... .....+ .++.. +.++++
T Consensus 258 ~~e~-----------e~~~~~~~---------~~~e---~-d~~ke~~~~~~~~-~~~-~~~rg~-~~~~~~~~r~K~rp 310 (482)
T 2xag_B 258 EDEL-----------EEANGNNP---------IDIE---V-DQNKESKKEVPPT-ETV-PQVKKE-KHSTQAKNRAKRKP 310 (482)
T ss_dssp -----------------------------------------------------------------------------CCC
T ss_pred CCCC-----------CCCCCCCC---------CCCC---C-CCCCCCCCCCCCC-CCC-CCCCCC-CCCCCCCCCCCCCC
T ss_conf 2111-----------12357886---------5322---4-5542245567766-554-443454-32344455434689
Q ss_pred CCCCCCCCCC-CCCCCCCCCC-----C---CCHHHHH-------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2445754433-4555788984-----4---3021210-------------023433467888523345688887756679
Q 000304 877 CGSLSSEAMS-SCITSSVDPA-----E---GQRDWRR-------------QKADSVMRLPSTSDVTQNVDDDTCSDESCG 934 (1697)
Q Consensus 877 tgSmSsEa~s-Sc~TsSvDP~-----~---G~re~K~-------------~Kv~s~~~~p~tsdvtq~~deet~Sd~S~g 934 (1697)
+++|..+.-. .++.++.... + .....+. .++..+..+...++. .
T Consensus 311 prgM~~~~edv~a~s~s~~~~~~~l~~~d~el~slk~qvq~~kq~~s~~~~~~~~g~~~~r~~e~--------------~ 376 (482)
T 2xag_B 311 PKGMFLSQEDVEAVSANATAATTVLRQLDMELVSVKRQIQNIKQTNSALKEKLDGGIEPYRLPEV--------------I 376 (482)
T ss_dssp STTCCCCHHHHHHHHSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGCCCCC--------------C
T ss_pred CCCCCCCHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--------------C
T ss_conf 98777756566653047421333320332058999999999998878888764125544457755--------------5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 8999999999999999999992989689996828989999999999978871987555687888
Q 000304 935 EMDPSDWTDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSKARKCLGLDLIHTGRGNV 998 (1697)
Q Consensus 935 Em~ssrWTdEE~elFleaL~kYGKDWkaIA~~VGTKTvaQcKsFY~kyRKRlnLD~il~e~~~~ 998 (1697)
.-...+||++|+.+|++||++|||||.+||++|||||+.|||+||++||+|++||.+++++...
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr~~ld~il~e~e~~ 440 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEWEAE 440 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTTTTHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf 6568999989999999999997868999997837998999999999999870829899999874
No 2
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=1.00 E-value=1 Score=225.46 Aligned_cols=93 Identities=37% Similarity=0.708 Sum_probs=90.4
Q ss_pred HHHCCCCCCCCCCCHHCCCCCEEECCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHH
Q ss_conf 43200256944469320023074047998764577885202699999989999999998549887789733088996678
Q 000304 680 TYRNSLKMPALILDKKEKMSSRFISSNGLVEDPCAVEKERAMINPWTSEEREIFVDKLATFGKDFRKIASFLNYKTTADC 759 (1697)
Q Consensus 680 kmR~vAvIPpMILD~eERr~~kFiDtNgLVeDP~avyKerq~in~WTEEEKeIF~EKylqhPKnFGKIAs~Lp~KTvaDC 759 (1697)
+||++|+|||||+|+++|+ .+|+|+||||+||+++|++++.++.||++|+++|.++|.+|||+|++||++||.||++||
T Consensus 2 ~~r~~A~IP~m~~d~~~~~-~~f~d~n~lv~dp~~~~~~r~~~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~c 80 (94)
T 4a69_C 2 AMRQLAVIPPMLYDADQQR-IKFINMNGLMADPMKVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAEC 80 (94)
T ss_dssp ---------------------CCBCTTSBBSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHH
T ss_pred CCHHCCCCCCCCCCHHHHH-HEECCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHH
T ss_conf 3012135897668878885-122046876668799984657778879999999999999939988999987199988999
Q ss_pred HHHHHHCCCCCCHH
Q ss_conf 78855115675738
Q 000304 760 VEFYYKNHKSDCFE 773 (1697)
Q Consensus 760 VlfYYltKKs~nYK 773 (1697)
|+|||+|||+.+||
T Consensus 81 V~~YY~~Kk~~~Yk 94 (94)
T 4a69_C 81 VLYYYLTKKNENYK 94 (94)
T ss_dssp HHHHHHHSCC----
T ss_pred HHHHHCCCCCCCCC
T ss_conf 99983314686779
No 3
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=1.00 E-value=1 Score=137.69 Aligned_cols=66 Identities=29% Similarity=0.440 Sum_probs=60.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 999999999999999999929896899968289899999999999788719875556878889987
Q 000304 937 DPSDWTDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSKARKCLGLDLIHTGRGNVGPSV 1002 (1697)
Q Consensus 937 ~ssrWTdEE~elFleaL~kYGKDWkaIA~~VGTKTvaQcKsFY~kyRKRlnLD~il~e~~~~g~P~ 1002 (1697)
...+||++|+.+|++||++|||||.+||++|||||+.|||+||++|++|++||.++++++....|+
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKRlnLD~ilke~eae~g~~ 197 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEWEAEHGKE 197 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTTTHHHHHHHHHTC----
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 679989899999999999988689999977599999999999999999866899999999863887
No 4
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=119.28 Aligned_cols=56 Identities=41% Similarity=0.769 Sum_probs=53.2
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 85202699999989999999998549887789733088996678788551156757
Q 000304 716 EKERAMINPWTSEEREIFVDKLATFGKDFRKIASFLNYKTTADCVEFYYKNHKSDC 771 (1697)
Q Consensus 716 yKerq~in~WTEEEKeIF~EKylqhPKnFGKIAs~Lp~KTvaDCVlfYYltKKs~n 771 (1697)
.++++.++.||++|+++|+++|.+|||+|++||.+||+||+.+||+|||+|||+.|
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk~~n 61 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKKNEN 61 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCC
T ss_conf 33342589989999999999999968779999978499989999999988507789
No 5
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=1.00 E-value=1 Score=119.13 Aligned_cols=58 Identities=28% Similarity=0.630 Sum_probs=53.8
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHH-HCCCCCHHHHHHHHHHCCCCCCHHHH
Q ss_conf 20269999998999999999854988778973-30889966787885511567573888
Q 000304 718 ERAMINPWTSEEREIFVDKLATFGKDFRKIAS-FLNYKTTADCVEFYYKNHKSDCFEKL 775 (1697)
Q Consensus 718 erq~in~WTEEEKeIF~EKylqhPKnFGKIAs-~Lp~KTvaDCVlfYYltKKs~nYKkL 775 (1697)
.++.++.||++|+++|.+++..|||+|++|+. +|+.||++|||.|||+|||+.+|++.
T Consensus 4 ~r~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wKkt~~y~q~ 62 (70)
T 2crg_A 4 GSSGMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKTTDRYVQQ 62 (70)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHHHTCCSSCSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHH
T ss_conf 54478998999999999999996964999999995999799999998710477269999
No 6
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=112.53 Aligned_cols=54 Identities=31% Similarity=0.552 Sum_probs=49.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCHHHHHH-HCCCCCHHHHHHHHHHCCCCCCHH
Q ss_conf 269999998999999999854988778973-308899667878855115675738
Q 000304 720 AMINPWTSEEREIFVDKLATFGKDFRKIAS-FLNYKTTADCVEFYYKNHKSDCFE 773 (1697)
Q Consensus 720 q~in~WTEEEKeIF~EKylqhPKnFGKIAs-~Lp~KTvaDCVlfYYltKKs~nYK 773 (1697)
...+.||++|+++|.+++.+|||+|++||. +|+.||+.|||.|||+|||+.+.+
T Consensus 7 ~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wKkt~~~~ 61 (63)
T 2yqk_A 7 GIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWKKTSGPS 61 (63)
T ss_dssp CCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 5789869999999999999968439999999859976999899870553788877
No 7
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=1.00 E-value=1 Score=100.27 Aligned_cols=64 Identities=19% Similarity=0.415 Sum_probs=58.8
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 8520269999998999999999854988778973308899667878855115675738888310
Q 000304 716 EKERAMINPWTSEEREIFVDKLATFGKDFRKIASFLNYKTTADCVEFYYKNHKSDCFEKLKKKH 779 (1697)
Q Consensus 716 yKerq~in~WTEEEKeIF~EKylqhPKnFGKIAs~Lp~KTvaDCVlfYYltKKs~nYKkLlRk~ 779 (1697)
+........||++|+++|++++..|+|+|..||.+|+.||+.+|+.|||.|||..++..+++++
T Consensus 127 e~~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKRlnLD~ilke~ 190 (235)
T 2iw5_B 127 EVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEW 190 (235)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTTTHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7777667998989999999999998868999997759999999999999999986689999999
No 8
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=93.65 Aligned_cols=60 Identities=28% Similarity=0.445 Sum_probs=57.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 999999999999999999929896899968289899999999999788719875556878
Q 000304 937 DPSDWTDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSKARKCLGLDLIHTGRG 996 (1697)
Q Consensus 937 ~ssrWTdEE~elFleaL~kYGKDWkaIA~~VGTKTvaQcKsFY~kyRKRlnLD~il~e~~ 996 (1697)
....||++|..+|++++.+||.+|..||.+|++||..|||++|++|.++++|+.++.++.
T Consensus 15 ~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~l~~~~~e~~ 74 (89)
T 2ltp_A 15 YFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNLDEILQQHK 74 (89)
No 9
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=91.71 Aligned_cols=50 Identities=28% Similarity=0.515 Sum_probs=47.6
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999929896899968289899999999999788719
Q 000304 938 PSDWTDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSKARKCLG 987 (1697)
Q Consensus 938 ssrWTdEE~elFleaL~kYGKDWkaIA~~VGTKTvaQcKsFY~kyRKRln 987 (1697)
...||++|+.+|++++.+||++|..||.+|++||+.||+.||+.++|+.|
T Consensus 12 ~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk~~n 61 (61)
T 2eqr_A 12 MNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKKNEN 61 (61)
T ss_dssp CCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTCCCC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCC
T ss_conf 89989999999999999968779999978499989999999988507789
No 10
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=1.00 E-value=1 Score=91.06 Aligned_cols=109 Identities=24% Similarity=0.483 Sum_probs=93.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 26999999899999999985498877897330889966787885511567573888831014788977666422224533
Q 000304 720 AMINPWTSEEREIFVDKLATFGKDFRKIASFLNYKTTADCVEFYYKNHKSDCFEKLKKKHDFSKQGKTSTNTYLVTTGKR 799 (1697)
Q Consensus 720 q~in~WTEEEKeIF~EKylqhPKnFGKIAs~Lp~KTvaDCVlfYYltKKs~nYKkLlRk~~lRKRGKss~~tyL~~sGkk 799 (1697)
.....||+||-++..+.+..|+.+|..||.+|+.|+..+|-..|+. +|
T Consensus 9 ~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~--------------------------~l------ 56 (126)
T 3osg_A 9 AKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKN--------------------------YL------ 56 (126)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHH--------------------------HT------
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHH--------------------------HC------
T ss_conf 8899989999999999999959799999988489988899988723--------------------------00------
Q ss_pred CCCCCCHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCC
Q ss_conf 21111001210003469999842013222345654579989987877998843457876668984210000012232244
Q 000304 800 NRKMNAASLDILGEASEIAAAAQVDGRQLISSGRISSGGRGDSRTSLGDDGIIERSSSFDVIGGERETAAADVLAGICGS 879 (1697)
Q Consensus 800 Nre~naaSlDilGaaS~~Aa~A~~a~~~~~sS~~i~s~~~~eskk~e~~d~~~erss~~D~~G~EREtvaAdvkAgItgS 879 (1697)
+ +..
T Consensus 57 ~---------------------------------------------------------------------p~~------- 60 (126)
T 3osg_A 57 A---------------------------------------------------------------------PSI------- 60 (126)
T ss_dssp S---------------------------------------------------------------------TTS-------
T ss_pred C---------------------------------------------------------------------CCC-------
T ss_conf 0---------------------------------------------------------------------101-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 57544334555788984430212100234334678885233456888877566798999999999999999999992989
Q 000304 880 LSSEAMSSCITSSVDPAEGQRDWRRQKADSVMRLPSTSDVTQNVDDDTCSDESCGEMDPSDWTDEEKSIFIQAVTSYGKD 959 (1697)
Q Consensus 880 mSsEa~sSc~TsSvDP~~G~re~K~~Kv~s~~~~p~tsdvtq~~deet~Sd~S~gEm~ssrWTdEE~elFleaL~kYGKD 959 (1697)
....||++|-.++++++.+||..
T Consensus 61 ---------------------------------------------------------~~~~WT~eEd~~L~~~v~~~G~~ 83 (126)
T 3osg_A 61 ---------------------------------------------------------SHTPWTAEEDALLVQKIQEYGRQ 83 (126)
T ss_dssp ---------------------------------------------------------CCSCCCHHHHHHHHHHHHHHCSC
T ss_pred ---------------------------------------------------------CCCCCCHHHHHHHHHHHHHHCCC
T ss_conf ---------------------------------------------------------12568989999999999998939
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 6899968289899999999999788719875556
Q 000304 960 FSMIARCIRTRSRDQCKVFFSKARKCLGLDLIHT 993 (1697)
Q Consensus 960 WkaIA~~VGTKTvaQcKsFY~kyRKRlnLD~il~ 993 (1697)
|..||+.+++||..|||+.|+.+.+++++..-..
T Consensus 84 W~~Ia~~l~gRt~~~~k~rw~~l~~k~~~p~~~~ 117 (126)
T 3osg_A 84 WAIIAKFFPGRTDIHIKNRWVTISNKLGIPQTQQ 117 (126)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 9999988699999999999999998549999887
Done!