Query 000305
Match_columns 1696
No_of_seqs 264 out of 433
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 03:38:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000305.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000305hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1878 Nuclear receptor coreg 100.0 4.9E-85 1.1E-89 798.1 27.0 1337 5-1511 127-1625(1672)
2 KOG1878 Nuclear receptor coreg 100.0 1.4E-39 3.1E-44 400.6 3.1 228 524-777 43-281 (1672)
3 KOG1194 Predicted DNA-binding 99.5 7.4E-15 1.6E-19 169.8 5.8 237 716-998 182-431 (534)
4 PF00249 Myb_DNA-binding: Myb- 99.0 4.9E-10 1.1E-14 95.5 6.1 45 938-982 2-48 (48)
5 KOG4329 DNA-binding protein [G 98.9 7.3E-10 1.6E-14 126.9 4.9 61 717-777 273-334 (445)
6 KOG4167 Predicted DNA-binding 98.8 2.8E-09 6.1E-14 129.3 4.9 54 718-771 616-669 (907)
7 TIGR01557 myb_SHAQKYF myb-like 98.8 7.6E-09 1.6E-13 93.0 6.0 47 938-984 4-56 (57)
8 smart00717 SANT SANT SWI3, AD 98.6 7.9E-08 1.7E-12 78.4 5.9 46 938-983 2-48 (49)
9 cd00167 SANT 'SWI3, ADA2, N-Co 98.6 1.2E-07 2.6E-12 76.5 5.9 43 939-981 1-44 (45)
10 KOG4167 Predicted DNA-binding 98.5 1.9E-07 4.1E-12 114.0 6.3 53 936-988 618-670 (907)
11 PF00249 Myb_DNA-binding: Myb- 98.4 4.2E-07 9.1E-12 77.7 5.3 45 722-766 2-48 (48)
12 smart00717 SANT SANT SWI3, AD 98.2 2.4E-06 5.3E-11 69.7 5.5 46 722-767 2-48 (49)
13 PF13921 Myb_DNA-bind_6: Myb-l 98.2 3.2E-06 7E-11 74.5 5.8 41 940-980 1-41 (60)
14 cd00167 SANT 'SWI3, ADA2, N-Co 98.0 1.2E-05 2.5E-10 65.0 5.3 43 723-765 1-44 (45)
15 KOG3554 Histone deacetylase co 97.6 4.1E-05 8.8E-10 90.7 3.3 59 718-776 282-341 (693)
16 COG5259 RSC8 RSC chromatin rem 97.4 0.00013 2.7E-09 87.2 4.9 42 938-979 280-321 (531)
17 KOG4329 DNA-binding protein [G 97.4 0.00054 1.2E-08 80.1 9.1 55 938-992 278-333 (445)
18 KOG1194 Predicted DNA-binding 97.4 0.00014 2.9E-09 86.6 4.3 59 937-995 187-245 (534)
19 KOG0457 Histone acetyltransfer 97.3 0.00033 7.1E-09 83.4 6.0 48 937-984 72-120 (438)
20 PF13921 Myb_DNA-bind_6: Myb-l 97.1 0.00078 1.7E-08 59.6 4.7 41 724-764 1-41 (60)
21 PLN03212 Transcription repress 97.0 0.002 4.4E-08 72.8 8.5 47 938-984 79-125 (249)
22 KOG1279 Chromatin remodeling f 96.9 0.001 2.3E-08 81.2 5.7 44 936-979 252-295 (506)
23 PLN03091 hypothetical protein; 96.6 0.0058 1.3E-07 73.6 8.3 44 938-981 68-111 (459)
24 PLN03212 Transcription repress 96.4 0.0052 1.1E-07 69.6 6.1 46 936-981 24-71 (249)
25 KOG4468 Polycomb-group transcr 96.1 0.0051 1.1E-07 75.5 4.4 49 938-986 89-147 (782)
26 PLN03091 hypothetical protein; 95.5 0.016 3.4E-07 70.0 5.2 45 937-981 14-60 (459)
27 TIGR01557 myb_SHAQKYF myb-like 95.5 0.027 5.8E-07 51.5 5.4 44 721-764 3-52 (57)
28 COG5118 BDP1 Transcription ini 95.1 0.03 6.4E-07 66.4 5.7 47 936-982 364-410 (507)
29 KOG3554 Histone deacetylase co 95.0 0.019 4.2E-07 69.1 3.8 51 926-982 280-331 (693)
30 COG5114 Histone acetyltransfer 94.9 0.046 9.9E-07 63.8 6.2 47 937-983 63-110 (432)
31 COG5259 RSC8 RSC chromatin rem 93.4 0.1 2.2E-06 63.6 5.3 54 723-776 281-334 (531)
32 KOG0048 Transcription factor, 92.4 0.25 5.4E-06 55.5 6.3 49 938-986 63-112 (238)
33 KOG0049 Transcription factor, 92.1 0.17 3.8E-06 63.3 5.0 44 938-981 361-405 (939)
34 KOG1279 Chromatin remodeling f 90.6 0.33 7.1E-06 60.3 5.3 56 719-774 251-306 (506)
35 KOG4468 Polycomb-group transcr 89.4 0.24 5.2E-06 61.7 2.9 49 721-769 88-146 (782)
36 PLN03142 Probable chromatin-re 85.9 1.1 2.4E-05 59.9 6.1 50 936-985 823-873 (1033)
37 KOG0457 Histone acetyltransfer 85.5 0.95 2.1E-05 55.2 4.7 44 723-766 74-118 (438)
38 KOG0050 mRNA splicing protein 83.5 1.1 2.4E-05 55.6 4.2 44 938-981 8-52 (617)
39 KOG0048 Transcription factor, 78.1 2.4 5.3E-05 47.8 4.2 44 938-981 10-55 (238)
40 PF13837 Myb_DNA-bind_4: Myb/S 76.5 3.1 6.8E-05 39.3 3.9 50 938-987 2-69 (90)
41 KOG0049 Transcription factor, 75.0 3.7 8E-05 52.4 4.9 50 937-986 412-465 (939)
42 KOG0051 RNA polymerase I termi 71.2 4.2 9.1E-05 51.8 4.3 46 937-982 436-507 (607)
43 PF13873 Myb_DNA-bind_5: Myb/S 68.3 14 0.0003 34.7 6.0 48 938-985 3-72 (78)
44 PLN03162 golden-2 like transcr 68.0 10 0.00022 46.1 6.1 49 937-985 237-290 (526)
45 PF12776 Myb_DNA-bind_3: Myb/S 64.3 14 0.0003 35.5 5.3 54 939-992 1-72 (96)
46 KOG0724 Zuotin and related mol 60.4 2.7 5.9E-05 49.0 -0.2 44 938-981 54-97 (335)
47 COG5118 BDP1 Transcription ini 56.8 13 0.00029 45.2 4.5 62 701-764 344-408 (507)
48 KOG2009 Transcription initiati 56.4 8.9 0.00019 48.9 3.2 46 936-981 408-453 (584)
49 KOG0051 RNA polymerase I termi 50.8 20 0.00044 46.1 5.0 46 937-983 384-429 (607)
50 PF00191 Annexin: Annexin; In 39.7 41 0.00089 30.4 4.0 44 946-989 4-47 (66)
51 PF11035 SnAPC_2_like: Small n 36.2 1.3E+02 0.0028 36.7 8.2 51 936-986 20-74 (344)
52 KOG1079 Transcriptional repres 32.8 32 0.0007 44.8 2.9 43 938-980 410-452 (739)
53 PF09420 Nop16: Ribosome bioge 29.5 79 0.0017 34.4 4.8 47 937-983 114-164 (164)
54 PF05263 DUF722: Protein of un 29.3 96 0.0021 33.4 5.2 47 938-985 80-127 (130)
55 COG5147 REB1 Myb superfamily p 28.7 53 0.0012 41.9 3.8 47 937-983 72-118 (512)
56 COG5147 REB1 Myb superfamily p 27.5 56 0.0012 41.7 3.7 45 720-764 71-115 (512)
57 PF08281 Sigma70_r4_2: Sigma-7 25.9 1.6E+02 0.0034 25.8 5.2 43 941-985 12-54 (54)
58 PF13384 HTH_23: Homeodomain-l 25.7 97 0.0021 26.7 3.8 46 941-989 3-48 (50)
59 KOG4282 Transcription factor G 23.0 1.2E+02 0.0026 36.1 5.2 40 938-978 55-109 (345)
60 PF04504 DUF573: Protein of un 22.6 1.6E+02 0.0035 29.9 5.2 50 938-987 5-67 (98)
61 cd07939 DRE_TIM_NifV Streptomy 22.4 84 0.0018 35.9 3.6 50 937-986 133-182 (259)
62 KOG3841 TEF-1 and related tran 21.6 1.2E+02 0.0025 37.8 4.6 46 938-984 77-144 (455)
63 COG5114 Histone acetyltransfer 21.6 92 0.002 37.8 3.8 53 722-774 64-117 (432)
64 KOG0050 mRNA splicing protein 21.2 83 0.0018 40.2 3.4 46 720-765 6-52 (617)
65 PF13837 Myb_DNA-bind_4: Myb/S 20.7 1.1E+02 0.0023 29.1 3.4 41 722-762 2-60 (90)
66 PF01388 ARID: ARID/BRIGHT DNA 20.6 1.9E+02 0.0042 28.0 5.1 35 948-982 41-88 (92)
No 1
>KOG1878 consensus Nuclear receptor coregulator SMRT/SMRTER, contains Myb-like domains [Transcription]
Probab=100.00 E-value=4.9e-85 Score=798.07 Aligned_cols=1337 Identities=20% Similarity=0.145 Sum_probs=1012.7
Q ss_pred CCCCcceecCCCccccCCCCcCCccccCCCCCCcccCCCCCCCCCCCccc--ccCCCccc-ccc----------------
Q 000305 5 ESTRISVSRGDGKYGRNSRENRSSFCQSDCKGYAWDTSNGYATTPGRLHE--VNCNQRSV-DDM---------------- 65 (1696)
Q Consensus 5 ~~~rp~~srgd~~y~r~~r~~rg~~~q~~~r~~~~e~~n~~~~~~~r~~~--~~~~~rsv-~~~---------------- 65 (1696)
.++|+..|+++|.|.++.+|+|-+..|..|.+..|++++++...+.++++ .++.+|++ +++
T Consensus 127 ~~rk~~ask~r~~yek~fpe~R~sReqqER~~~~~~ts~rse~~f~s~l~qe~~~k~~r~~a~iP~~~~D~~~~v~nkle 206 (1672)
T KOG1878|consen 127 SRRKAKASKTREYYEKQFPEIRKSREQQERWQRASETSARSEHEFSSILDQENAEKQMRQLAVIPRMLTDSARQVRNKLE 206 (1672)
T ss_pred CcccchhhhhhhhhhhhCchHHHHHHHHHHHhhhhhhcccccccchhhhccccchhhhhhhhccCcccccchhhhhhhhc
Confidence 47899999999999999999999999999999999999999988888888 55666666 333
Q ss_pred ----ccC-CCCCCCC-----------------------------------------------------------------
Q 000305 66 ----LTY-PSHPQSD----------------------------------------------------------------- 75 (1696)
Q Consensus 66 ----l~~-~s~p~s~----------------------------------------------------------------- 75 (1696)
|+| |--+|.|
T Consensus 207 ~~N~~~~d~nkv~k~~~~~n~Ws~~Ek~~fk~rf~~H~knf~~~as~~erkSv~d~vlfyy~nkkte~yk~~~~r~~~r~ 286 (1672)
T KOG1878|consen 207 NMNSLMKDPNKVHKDRQRMNEWSPEEKELFKSRFAQHVKNFGLIASFFERKSVSDCVLFYYLNKKTENYKKLVRRPKKRS 286 (1672)
T ss_pred cCCccccCcccccchHHHhhhccccccccccchhhhcCcchhhhhhhhcccchhhceeeeeecccchhHHhhhccccccc
Confidence 121 0011222
Q ss_pred --------------cc-ccccccccCccc-cccccccCCCCccccccccCC--CCccccccccCCCCCCCCCCccCCCCC
Q 000305 76 --------------FV-TWDHLQLKDQHD-NKIGSVNGLATGQRCESENSL--DWKKIKWTRSGSLSSRGSGLSHSSSSK 137 (1696)
Q Consensus 76 --------------~~-~w~q~~lkd~~d-nk~~~vn~~~tg~r~dre~~~--~wkp~~w~~sgs~ss~~sg~shsss~~ 137 (1696)
.. +|++..|+|..+ |+..+++..-..+.+.||... .-++++|.- +.+++.-++|||.++.+
T Consensus 287 ~s~~~~~~~~~~~Ele~~ee~~~ledpkes~~~~~~~d~~~~~~~~resv~~e~~~~Ple~~-ei~a~e~de~see~ev~ 365 (1672)
T KOG1878|consen 287 QSYKVGAFPSPEEELEKEEEKPELEDPKESFPKNKLIDYFGERTVERESVNGEEPFMPLEPY-EIFAIEPDELSEEMEVA 365 (1672)
T ss_pred hhccccccCChHhhhhhhhhcccccCccccccccccccccccccccccccccCCCCCCCCCc-cccccCccccchhhhhh
Confidence 13 899999999987 889999999999999999999 888889998 99999999999999999
Q ss_pred CCCCCCCCCCCCcccccccccccCCCCCccceeccCccccccccccCCCCc-ccchhhhhhccccccCCCCCCCCCCccc
Q 000305 138 SMGGVDSSEGKTDFQVKNATSIQSPSGDAATYATSGVLFEETTSRKKPRLG-WGEGLAKYEKKKVEVPDVSGNKDGVFNF 216 (1696)
Q Consensus 138 s~~~~ds~e~~~~~~~k~~t~~~s~s~da~a~~~~~~~see~~~rkk~rlg-wgeglakyekkkv~~p~~~~n~dg~~~~ 216 (1696)
.+|.+|....++.+.|+.+|..++..++|.||.+..|..+|+..++|.+++ |+++++||++++|++ ..++++...+
T Consensus 366 k~Glveh~R~~aai~p~vvt~tes~c~na~a~~~~r~N~d~~ld~~k~k~~t~~e~~~k~k~~~vav---t~s~~~~e~m 442 (1672)
T KOG1878|consen 366 KSGLVEHGREWAAILPKVVTKTESQCKNAYAKYKNRHNLDEPLDQHKQKVRTRAEIRDKSKSTRVAV---TFSAKEDETM 442 (1672)
T ss_pred hccchhhhhhHHHhcCccceecccchhhHHHhhhhhhcchhhhhhhhcccccHHHHHhhhcCccccc---cccccccccc
Confidence 999999999999999999999999999999999999999999999999999 999999999999999 7778999999
Q ss_pred cCCCCccccccccccccCCCccccCCCCCCCCCCcccCCCCCcchhcccccccccccccccccC-CCCcccccccccccc
Q 000305 217 SSNAEPLQSLSSNLAEKSPRVMGFSDCASPATPSSVACSSSPGVEEKAFGKAVSVDNDVSNLCG-SPSIVSQNHREGFLF 295 (1696)
Q Consensus 217 ~~n~e~~~~~~~nl~dksp~~~~~~dc~spatpssvacssspg~~~k~~~k~~n~~~~~~n~~~-sp~~~~~~~~~~~~~ 295 (1696)
..+.|..+.+.+++++++|+....-+..||.|+++|+|+++|+++.++..+.+.+.-.++|+|. .+++...+|++.|.+
T Consensus 443 E~~neeE~~~d~e~l~~s~t~~vv~nd~s~t~~~sv~~~s~Pt~~~~ss~~~~~n~~r~p~e~~~q~s~~~~i~te~~~~ 522 (1672)
T KOG1878|consen 443 EISNEEEETEDAEALNYSGTKQVVWNDDSSTTNLSVAIESSPTPDTESSSWEGMNQPRRPNECEMQYSAMNGIKTEPMIE 522 (1672)
T ss_pred ccccchhcccchhhhccCcccccCCCCCCCCccccccccccCCccccccchhhhcCCCCCccccccccccccccccCCch
Confidence 9999999999999999999877777788889999999999999999999999999899999999 999999999999999
Q ss_pred cccccCCcccchhhhHHHHhhccCCCCCCCccccccccccceehccchhhhhhhhhhhhhhhhhhhhhhcccccCCcCCC
Q 000305 296 NLEKLDTNSIGNLGSSLVELLQYDDPSSVDSSFVRSTAMNKLLVWKGDILKTLEMTETEIDSLENELKSLKSVLGSTSPC 375 (1696)
Q Consensus 296 ~l~~ld~~~~~~lg~~l~ellq~dd~~s~ds~~~r~t~~~kll~~k~~isk~le~te~eid~le~elks~~~~~~~~~~~ 375 (1696)
+.+++|.+.....|+-|.|||..||..+.|+..+.+|+||.++-|| |.+||+|.||+. |++...+|.+.. -
T Consensus 523 ~~eE~d~i~~e~~gpp~~~ll~t~t~~~~e~~~~~~t~~~d~~~~k----k~~e~ae~eie~-e~ke~~~k~e~~----a 593 (1672)
T KOG1878|consen 523 EVEEEDAIGQEEGGPPLAELLNTDTTSSAEPRRSKGTAENDKKPLK----KDTERAEREIET-EGKERTGKAETR----A 593 (1672)
T ss_pred hhhhhccccccccCccHHHHhcCCcccccchhhhhhhhccccchhh----hhcccchhhccc-cccccchhhhhh----c
Confidence 9999999999999999999999999999999999999999999999 999999999998 888888888875 2
Q ss_pred CcccccccccC--CCCcccccccccccccCCCCccccc-CCCcccccCCCCCCcccccCCCCCccCCCCCcccccccccc
Q 000305 376 PVTSISLSVED--NANPFNKQGTVSNSIIRPAPLQIDC-GDLSVENMPDCSHGLEEVHGNSKDEDIDSPGTATSKFVEPS 452 (1696)
Q Consensus 376 p~~~~~~~~~~--~~~~~~eq~~~s~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ee~~dspg~a~~k~vep~ 452 (1696)
-+...++++++ ++....|++.+ +|.|+.... -..+..+.|+..++ ++++..+ |+|+- +.+.
T Consensus 594 q~~~~~~~~d~~~dE~~e~E~e~~-----~~dp~astgS~~kn~~~aPvD~a~---~p~~~~~---dsp~~-----~~~~ 657 (1672)
T KOG1878|consen 594 QRVPKPVDDDGSADEIDEMEIEDS-----LPDPLASTGSRRKNSVKAPVDLAG---SPADMEG---DSPEP-----PDQD 657 (1672)
T ss_pred ccCCCccccccchhcccccccccc-----cCCcccCccccccccccCcccccc---Ccchhhc---cCCCC-----cCcc
Confidence 33456677888 78888899885 444554443 23444488888777 4566666 67776 3443
Q ss_pred ccccCCCCcccccCCcccccccccccccccccccCCCCCccccccCCC-ccCCCccccccccccccccCcccccccchhH
Q 000305 453 SFVKPVSPSNMLKNGESFGVLDTVHSSNTEVKCTMPGSSFGEVVAGAS-TCGDGDMILESKNDALISSNFSAYADGENML 531 (1696)
Q Consensus 453 ~~~~~~~~~~~~~~~e~~g~~~~~~s~~m~~~~~~~~~~~~~~~~~~~-~c~d~~~~~e~~~~~~~s~d~~s~~~~~~SL 531 (1696)
+ .++.+....+ |+..+.. |+ +.|+ .....++++ +-++ .++. .+++=...+..+..+
T Consensus 658 a-----a~~~~~~~~~---~i~~~~~--~~--~dv~---~k~~~spa~rs~qe---~~D~-----~~ps~~p~~~ke~~~ 714 (1672)
T KOG1878|consen 658 A-----APTQPPDQDP---DIEEVIQ--RD--IDVP---VKTLLSPASRSGQE---KIDF-----ETPSHVPRIQKESEV 714 (1672)
T ss_pred c-----cccCCCCCCC---chhhhcc--hh--cccc---cccccChhhhccCC---cccc-----cCcCCCccccCcchh
Confidence 4 5555555554 3333333 44 2233 222333333 2222 1111 111112445577888
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccCc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000305 532 CDMILGANKELANEASEVLKKLLPRDHSNIDISGV-ANVFCCQNDSLVKEKFAKKKQLLRFKERVLTLKFKAFQHLWRED 610 (1696)
Q Consensus 532 vQ~IYaENRKkAeeAH~iL~gLgPqvelPLd~~~v-yNqdt~QyhEnIkeklAeRKqLLrfKEr~La~KY~aL~eaWeek 610 (1696)
|+...-+|.|.+....-++..+++.++.-....++ +-+.|.|.+-.+.++.+ +--.++.+..++-..|+....-|.++
T Consensus 715 i~p~p~ap~k~s~~~~Gv~n~~~~i~h~~~sek~a~~~g~~t~~~sh~qe~s~-sVG~~r~r~~r~~d~~k~ael~~vk~ 793 (1672)
T KOG1878|consen 715 IQPPPHAPTKISESPDGVRNDPLLIDHYYVSEKGAISPGPCTQLSSHLQESSA-SVGGRRKRLERSNDQFKAAELSGVKQ 793 (1672)
T ss_pred ccCCCCCCcccccCCCCCcCCccccccccccCCcccCCCccccccchhhhhcc-cccccccccccccchhhhccccccch
Confidence 89888889777776666665544444211111122 22355677666666665 33345555556666788888889988
Q ss_pred HHHHhhhhhhhhchhhhhhcccccCCccccCcccccccCCCCCCC---CCcccHHHHHHHHHhhhcchhhhhhhcccccC
Q 000305 611 LRLLSIRKYRARSQKKCELSLRTTYTGYQKHRSSIRSRFSSPAGN---LSLVQTAEVINFTSKLLSDSQIKTYRNSLKMP 687 (1696)
Q Consensus 611 ~Rlls~~KrRAKe~KkRE~~eR~~FPEl~KQRSSlReRFsRR~Gr---LS~vseAEI~evl~qlekDp~~K~mR~aAvIP 687 (1696)
+.-+....+.+++.+..+.......++.-.+-...|.++.....+ -..+-+-|++.+++...-....+..|.+.++|
T Consensus 794 ~qqesl~~~qaqea~s~~~~~~svt~g~L~~gt~vRl~~~~Sp~rs~~~~hVi~le~~~g~es~~p~~eiap~r~~lk~~ 873 (1672)
T KOG1878|consen 794 EQQESLQVPQAQEAKSENAYPGSVTPGVLVKGTIVRLVNEDSPSRSVAKGHVITLEYEGGMESSVPPHEIAPKRIYLKMP 873 (1672)
T ss_pred hhhhhhcchhhhhcccccCCccccccceeeeceeeecccCCCCCcccccCceeeeeccccccccCCcccccchhhhhccc
Confidence 766666666666665555544444454444444455555321111 01111223333344444444556778888999
Q ss_pred ccccChhhhccceeccCCCCCcchHHHHhhcccCCCCC-HHHHHHHHHHHHhcCCCHHHHHhhcCCCChhHHHHHhhhcc
Q 000305 688 ALILDKKEKMSSRFISSNGLVEDPCAVEKERAMINPWT-SEEREIFVDKLATFGKDFRKIASFLNYKTTADCVEFYYKNH 766 (1696)
Q Consensus 688 pMILDpeER~~~kFiDtNgLVeDP~av~Kerq~in~WT-EEEkeiF~EKylqhPKnFGkIAs~Lp~KTvsDCVlfYYltK 766 (1696)
.|+++..|+.+.+|+-+||.+.++.+....+.+..+|+ -|+.+.|+.....++|.|-.|+.++..++.++ +.+||+.
T Consensus 874 a~v~~~~E~~msr~i~tn~~~~~~~~~~~~~~g~~P~~t~E~~e~~Ln~lr~~~k~~P~i~~s~~a~kt~q-~~~~lkp- 951 (1672)
T KOG1878|consen 874 AVVSAGAEGLMSRAIPTNNHSPALLKEPIVQQGGIPRRTVETPEDILNPLRPTAKSTPPIRQSLGAFKTQQ-QQQQLKP- 951 (1672)
T ss_pred ccccccccccccccccCCCCCccccccchhhccCCCcccccchHHHhhhccccCCCCCchHHHHHhhhhhc-cchhhcc-
Confidence 99999999999999999999999999888889999999 99999999999999999999999999999999 4444444
Q ss_pred cCcChHHHHhhcccCCCCCCc--ccccccccccc-ccccccchhhhhchhHHHHHHhhhccccccccccccCCCCCCCCC
Q 000305 767 KSDCFEKLKKKHDFSKQGKTS--TNTYLVTTGKR-NRKMNAASLDILGEASEIAAAAQVDGRQLISSGRISSGGRGDSRT 843 (1696)
Q Consensus 767 Ks~nYKkLlrk~~lRKRGrss--~~nyL~~sgkk-Nre~naASlDilgaaS~~Aa~a~~a~~~~~sS~~i~~~g~~esk~ 843 (1696)
...+.-.++++ -+|++. ..+|+....++ ++++-++.+||++..+..+-...++...+.++..++++++.....
T Consensus 952 ~~s~~~~~Ik~----~~~rs~~~i~~y~~~~~r~~k~~~~aa~Tdik~Dg~st~~a~k~av~~~i~sP~~t~~~~~s~~v 1027 (1672)
T KOG1878|consen 952 QQSNLMQTIKN----ENGRSIHEIPPYQQQQQRPQKEGSIAAGTDIKRDGSSTSGAPKHAVQRLISSPDETLRGLFSLPV 1027 (1672)
T ss_pred hhhhHHHHHHh----hcccchhcccHhhhhcchhhhhhhccccCcccccCccccccchhheeccccCchhhcCCCCcccc
Confidence 44444455553 244432 24777666555 788889999999875332222223322112334444443322111
Q ss_pred CCCCCCcccc-CCCcccCCCcccchhccccccccccccccccccccccCCCCcc--------cchhhhhcc-----cccc
Q 000305 844 SLGDDGIIER-SSSFDVIGGERETAAADVLAGICGSLSSEAMSSCITSSVDPAE--------GQRDWRRQK-----ADSV 909 (1696)
Q Consensus 844 ~e~~dg~~er-ss~~D~~G~ERETvaAdvkAgItgSmSsEa~ssc~TtSvDP~~--------G~re~K~~K-----v~s~ 909 (1696)
-...-...++ ...++..| .-|+.+.+.+ .+.+.++-.++|-..+..+.. +.+..+... -++.
T Consensus 1028 ~~~~~~~~~g~~~~~~~~~--~~ta~~~i~s--v~~~~~~~~~~~hr~s~S~~s~~a~~lP~~~~~~~~~~sp~l~~~ss 1103 (1672)
T KOG1878|consen 1028 IPEQQRPAEGCKYEQPKHG--QNTASASISS--VDQGPPVLGPALHRDSLSQLSTSATHLPPPHLVSMQRPSPTLHNRSS 1103 (1672)
T ss_pred cccccchhhcccccccccC--Cccccccccc--ccCCCcccchhhcccccccccchhhcCCCcccccccCCccccccccc
Confidence 0000001111 01122222 1122222211 123333333333332222211 111111000 0011
Q ss_pred ccCCCCcccccccCCCCCCcccCCCCCCCCCCHH-HHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhCCC
Q 000305 910 MRLPSTSDVTQNVDDDTCSDESCGEMDPSDWTDE-EKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSKARKCLGLD 988 (1696)
Q Consensus 910 ~~~P~t~dvtq~~deet~Sd~S~gEm~ssrWTdE-Ek~lFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~kyRKrLnLD 988 (1696)
..++ .++-+- +..|++++|.+.+...|+.. |+..|......+||.+.-|+..+++....||+.||..|++...|.
T Consensus 1104 ~t~~---~~tsn~-~~~~se~s~~~~~~i~~v~~~e~~~r~~~~~dlgR~~~~is~~~~~~~~~~~~~f~sa~r~~~qLe 1179 (1672)
T KOG1878|consen 1104 STEP---TGTSNP-DNRESEHSTTPEDAIHPVTNNENFSRIRNAIDLGRSHTPISNYPANIDRSMKSSFASAYRHERQLE 1179 (1672)
T ss_pred cccc---ccCCCc-cccccccccCcccCCccccccchhhhccchhhhccccccccccccccChhhhhhHHHHHHHHhccc
Confidence 1111 111111 23567788888888999987 999999999999999999999999999999999999999999998
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCcccccccCcccccCCCCCccccCCCcccccccccccchhhccccccccCCCCCCC
Q 000305 989 LIHTGRGNVGPSVNDDANGGGSDTEDACVLETSSVNCSDKLGSKTDEELPSHVIHSNQEESCSAGAKNLQTDLNKPEDDN 1068 (1696)
Q Consensus 989 ~il~e~~~~g~P~sDda~gggS~tsdac~~E~~s~~~sd~s~~~~~~d~p~~~~~~~~~~s~~~~~~~~~a~L~~~e~~~ 1068 (1696)
..-.-+..+ -+-.-.++.++|-.++|.++.+.++...+++.++..++|..-.+++.+..++.+.++++.++.....-|
T Consensus 1180 ~~p~~~~~v--av~n~~~~i~~D~~ts~~m~~N~~~~n~~v~~~~r~lsP~~~~i~~~y~a~p~g~~~~s~~~~~~~~~n 1257 (1672)
T KOG1878|consen 1180 PTPSYPNIV--AVQNIRQTITNDYITSQQMLVNPVNGNGQVNDDGRGLSPTEHAISQGYPAFPRGIIDLSQIPRAPPKFN 1257 (1672)
T ss_pred CCCCCCcce--ehhccccccccCcccchhhhcCccccccccCccccccCcccchhhccCCccCCCccccccCCCCCcccC
Confidence 743322111 011124567789999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCcccccccccchhhhccc-----chhcccccccCccccchhhhhhhhhhhhhhHHhhhhhhhcccceeecCC
Q 000305 1069 GITPLNDKDSEAVKPVNNDAFRTESR-----SFELESNNMNGMDNQSESVLDQKNAVELFKTAVRDKVAEQGAVSVSAGE 1143 (1696)
Q Consensus 1069 g~~~~~~~d~~~~~~~~~d~~~~~~~-----~~~~d~~~~~~~~~qs~~~~~~~~~~~s~~~~~~d~~~~~~~~s~~~~~ 1143 (1696)
+. .+...+.+ .|++.|+.++.| .++.|+..+++.+.|+.+.+ ..+++ ||| +.+...+++..
T Consensus 1258 ~~-~~~l~~~~---~la~~p~a~~~F~sr~~ns~~~~~~~~t~ea~~~~a~----~~r~~---E~d---~~~~t~~~i~~ 1323 (1672)
T KOG1878|consen 1258 PS-GLPLAAMD---RLAYAPYAMSSFPSRKENSARDSPGIPTHEAQSQAAG----RLRSR---ERD---EGRETEVTISS 1323 (1672)
T ss_pred CC-CCccchhh---hhhhCccccccCCCccccccccCCCCchhhhhhhhhh----HHhhh---hcc---ccccccceeec
Confidence 97 55555544 577788888885 66899999999998888877 34433 566 45678889999
Q ss_pred CCCCCCCCcchhhccccccccccccccCCCcccccccccccccccccccccccCccccccccccccccccccccc-----
Q 000305 1144 ESDPCPSSSNAVEETNDVVAEASTEGFGNGLERYQPMLLENSLNDVRDKICNVDACGESEIVQDSNTTGSAFDLY----- 1218 (1696)
Q Consensus 1144 ~~~~~~s~~~~~~~~~~~v~e~~~~~~~n~~~~~~~~~~~~sl~~~~~~~~~~d~~~~~~~~~~s~~~~n~~~~~----- 1218 (1696)
++++|. .+.+..+++| |++.++. ++..++.+++.. +.++||.+++|.|++.++
T Consensus 1324 s~~~~~-----~~~~~~~~~e----~s~~~sg-~gs~~~r~s~~~------------~qq~~q~~~rtq~~~lq~~s~p~ 1381 (1672)
T KOG1878|consen 1324 SPLYCG-----LSVLSNPGVE----GSRGGSG-QGSPSPRFSSKN------------QQQVMQAANRTQNSGLQPPSAPH 1381 (1672)
T ss_pred cccccc-----ccccccCCcc----ccccccC-CCCCCchhhhhh------------hhhhhhhhhhhcccccCCccccc
Confidence 999997 6677788888 5555555 777888888888 889999999999999776
Q ss_pred ---cCCCCcceeeccccCCCCCccccCCCCCCCccccc-cchhhHHHHHHhhhccccccccccccccccCCcccccCccc
Q 000305 1219 ---VDASSHSVSSKLDSVDKPPLISLPQWNSHPAAAST-QDSSVIQCEKAFIQDRMSSTLEFQRSKDKSGHKSVVSDDYR 1294 (1696)
Q Consensus 1219 ---~~sc~~~v~~~~~s~~~p~~~sl~~~n~~~~~~s~-~~s~~~q~ek~~~q~~~~st~~~~~~~d~~~~~s~~~d~~~ 1294 (1696)
+..|+|+|+.++|. +.|..++.+..|++|++.|. +.+.++|+.+||+.+|.+.+|++ |+..
T Consensus 1382 g~~~~~~l~~v~~~~~t-~~p~g~~~~~~~p~~~~~s~~~s~l~~~vd~t~~~~~~~~~le~--------------~~r~ 1446 (1672)
T KOG1878|consen 1382 GTRYPECLHAVPPSVST-ELPIGVSAPRGNPAAHAESASGSSLGGQVDETHDLGWEPNNLEL--------------DGRL 1446 (1672)
T ss_pred ccCCcccccCCCccccc-cccccCcCCCCCccccCcccccCCCcccccccccccCCcccccc--------------cchh
Confidence 35699999999999 99999999999999999999 99999999999999999999999 8888
Q ss_pred cccCccccccccccccccCCccccccccccccCcccccchh--hhhhc-----ccccCCCCCccccccccccccCCCCCC
Q 000305 1295 QHLSVHSIVNHVESPQILNGYPLPISTKKEMNGDINCRQLS--EVQSI-----SKSDRNIDEPYLAQDCYLRKCNSSMPH 1367 (1696)
Q Consensus 1295 q~l~~~~l~~~~~~~~i~~gyp~qip~kkemn~d~~c~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1367 (1696)
|.+ | |+ .|.||..++-.|. ..|.++. +++++ ++++..+.++.+++ +.+.||......
T Consensus 1447 ~a~-~-----~~--------~~~q~g~~~~~~~-~~~~~~~~~~s~~~s~~~r~~s~~v~~~a~~~~-~p~k~~~~~~~~ 1510 (1672)
T KOG1878|consen 1447 QAL-G-----HV--------NPEQIGHLKLTNT-ESCQNPQRSSSQDPSRIPRPKSDLVVKTARTGE-FPLKKCTPSAPK 1510 (1672)
T ss_pred hhc-c-----cC--------CHHhhcchhhcCc-hhhcccccccccCCCCCCccCCcchhcccccCC-CCccccCcccCC
Confidence 877 6 77 8999999999999 8999887 66655 89999999999999 999999999988
Q ss_pred CCcccccccccccccccCccccccccCCCCCcccCCCCeeeeeecccCCCCCCCCCCcccCCCCCCCCC--CCCccc---
Q 000305 1368 SSVTELPFLAENIEQTSDRRRAHSCSFSDTEKPSKNGDVKLFGKILSHPSSSQKSAFSSHDNGENGHHH--KQSSKA--- 1442 (1696)
Q Consensus 1368 ~~~~elp~~~~~~~~~~~~~r~~~~s~s~~ek~~rngdvklfg~ils~~~~~q~~~~~~~~~~~~~~~~--k~~~~s--- 1442 (1696)
|.-.-+.+..+++-|+|+.+.++++.-.+||++||||-|||-+ +++.+.+|. .+...+
T Consensus 1511 ------p~~~~~~~~~s~~~r~~s~s~~~s~~~~~~~sl~~~gs~ls~d-----------~~e~~s~~s~p~~~~e~~~~ 1573 (1672)
T KOG1878|consen 1511 ------PLAVSHKEGASGPSRSKSFSLSDSERLHKNGSLKLHGSVLSTD-----------ANEIKSPHSSPGIVREKSTL 1573 (1672)
T ss_pred ------CCCCccccccCCCCCchhhccccccccccccccccccccccCc-----------cccccCCCCCCCCccccccc
Confidence 7777777888999999999999999999999999999999999 777777754 443333
Q ss_pred cccccccCCCCCCCcccccCCCCCCCCccCcccccccccCCCccccCCCCCCchHHHHhhcccccCCCC
Q 000305 1443 SNLKFTAHHPPDGGAALLKFDRNNYVGLENGPARSYGFWDGSKIQTGFSSLPDSAILLAKYPAAFGGYP 1511 (1696)
Q Consensus 1443 ~~~~~tgh~~~d~~~~~~k~~~~~~~glen~p~~syg~wdg~~iqtg~sslp~~~~~lak~paafsny~ 1511 (1696)
+.+-.|.||.+ ++-.|.|+|.-+|||||| ||++||+++.+++-||+||+..+
T Consensus 1574 ~~~~~~~~~~~------------e~~~~~~~p~~~~~~~~~-----~l~slpesa~~~ss~~e~~~~~~ 1625 (1672)
T KOG1878|consen 1574 SRLEDTRHHYA------------EQQHLQNVPGPSYGFWDG-----GLTSLPESAKLLSSCPEAFSTVL 1625 (1672)
T ss_pred ccHHHHHHHHh------------hccccccCCCcccccccc-----ccccChhhccccCcchhhhcccc
Confidence 34557888887 567899999999999999 99999999999999999999765
No 2
>KOG1878 consensus Nuclear receptor coregulator SMRT/SMRTER, contains Myb-like domains [Transcription]
Probab=100.00 E-value=1.4e-39 Score=400.57 Aligned_cols=228 Identities=23% Similarity=0.381 Sum_probs=195.4
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccCcccccccccchHHHHHHHHHHHHHHHHHHHH-------
Q 000305 524 YADGENMLCDMILGANKELANEASEVLKKLLPRDHSNIDISGVANVFCCQNDSLVKEKFAKKKQLLRFKERVL------- 596 (1696)
Q Consensus 524 ~~~~~~SLvQ~IYaENRKkAeeAH~iL~gLgPqvelPLd~~~vyNqdt~QyhEnIkeklAeRKqLLrfKEr~L------- 596 (1696)
...++.+||++||+| +++|+|++++++|+++. ++.||+++|++.+. .-++||.+++
T Consensus 43 fe~k~~~~v~~ip~~-----------~~g~~p~v~~~~~n~Ps---~t~q~~~~igie~~---~~l~Fk~~~~ark~~~~ 105 (1672)
T KOG1878|consen 43 FEIKHRSLVQIIPDE-----------EEGLGPYVELSLYNQPS---DTNQYLELIGIEQS---LPLLFKRRNFARKQLAQ 105 (1672)
T ss_pred cccccCcceeecccc-----------ccCcccccCccccCCCc---cchhhHhhhhhccc---hhhhcccccccchhhHH
Confidence 344668999999999 99999999999955432 78999999999998 2245554443
Q ss_pred --HHHHHHHHHHHHHHHHHHhhhhhhhhchhhhhhcccccCCccccCcccccccCCCCCC-CC-CcccHHHHHHHHHhhh
Q 000305 597 --TLKFKAFQHLWREDLRLLSIRKYRARSQKKCELSLRTTYTGYQKHRSSIRSRFSSPAG-NL-SLVQTAEVINFTSKLL 672 (1696)
Q Consensus 597 --a~KY~aL~eaWeek~Rlls~~KrRAKe~KkRE~~eR~~FPEl~KQRSSlReRFsRR~G-rL-S~vseAEI~evl~qle 672 (1696)
.++|.+++++|++..+ ++..++|++..+.|++ +++.||+++++|+ .++||.++.. .. +.-++.+|+. |
T Consensus 106 k~~e~~s~~~~~~eks~~-~~~~~rk~~ask~r~~-yek~fpe~R~sRe-qqER~~~~~~ts~rse~~f~s~l~---q-- 177 (1672)
T KOG1878|consen 106 KFCERYSQLMEDLEKSVE-ENNSRRKAKASKTREY-YEKQFPEIRKSRE-QQERWQRASETSARSEHEFSSILD---Q-- 177 (1672)
T ss_pred HHHHHHhhhhHHHHHhhh-hcCCcccchhhhhhhh-hhhhCchHHHHHH-HHHHHhhhhhhcccccccchhhhc---c--
Confidence 4569999999999977 7889999999999999 6789999999995 7999998641 11 3335566665 3
Q ss_pred cchhhhhhhcccccCccccChhhhccceeccCCCCCcchHHHHhhcccCCCCCHHHHHHHHHHHHhcCCCHHHHHhhcCC
Q 000305 673 SDSQIKTYRNSLKMPALILDKKEKMSSRFISSNGLVEDPCAVEKERAMINPWTSEEREIFVDKLATFGKDFRKIASFLNY 752 (1696)
Q Consensus 673 kDp~~K~mR~aAvIPpMILDpeER~~~kFiDtNgLVeDP~av~Kerq~in~WTEEEkeiF~EKylqhPKnFGkIAs~Lp~ 752 (1696)
+...|+||++++||+|+.|-..+...+|+++|+++.||+.+|+.++.+|.|+++||++|..+|.+|+|+|+.|++|++.
T Consensus 178 -e~~~k~~r~~a~iP~~~~D~~~~v~nkle~~N~~~~d~nkv~k~~~~~n~Ws~~Ek~~fk~rf~~H~knf~~~as~~er 256 (1672)
T KOG1878|consen 178 -ENAEKQMRQLAVIPRMLTDSARQVRNKLENMNSLMKDPNKVHKDRQRMNEWSPEEKELFKSRFAQHVKNFGLIASFFER 256 (1672)
T ss_pred -ccchhhhhhhhccCcccccchhhhhhhhccCCccccCcccccchHHHhhhccccccccccchhhhcCcchhhhhhhhcc
Confidence 4568999999999999999555555799999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHhhhcccCcChHHHHhh
Q 000305 753 KTTADCVEFYYKNHKSDCFEKLKKK 777 (1696)
Q Consensus 753 KTvsDCVlfYYltKKs~nYKkLlrk 777 (1696)
||+.|||+|||++||+++||.++++
T Consensus 257 kSv~d~vlfyy~nkkte~yk~~~~r 281 (1672)
T KOG1878|consen 257 KSVSDCVLFYYLNKKTENYKKLVRR 281 (1672)
T ss_pred cchhhceeeeeecccchhHHhhhcc
Confidence 9999999999999999999999994
No 3
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=99.52 E-value=7.4e-15 Score=169.83 Aligned_cols=237 Identities=16% Similarity=0.210 Sum_probs=132.5
Q ss_pred hhcccCCCCCHHHHHHHHHHHHhcCCCHHHHHhhcCCCChhHHHHHhhhcccCcChHHHHhhcccCCCCCCcc-------
Q 000305 716 KERAMINPWTSEEREIFVDKLATFGKDFRKIASFLNYKTTADCVEFYYKNHKSDCFEKLKKKHDFSKQGKTST------- 788 (1696)
Q Consensus 716 Kerq~in~WTEEEkeiF~EKylqhPKnFGkIAs~Lp~KTvsDCVlfYYltKKs~nYKkLlrk~~lRKRGrss~------- 788 (1696)
+.....+.||.||+-+|..+|.+|+|+|++|-+.||+|+.+..|+|||.|||...|...... ++.+.++
T Consensus 182 rr~~~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~~~~~s~~~~----h~~~~~~~~~~~~s 257 (534)
T KOG1194|consen 182 RRTEFPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKTREYDSQMNR----HRNETKTYEELFKS 257 (534)
T ss_pred hcCCCcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHHhhHHHHHHH----HHhhhhhhhhhcCC
Confidence 34467789999999999999999999999999999999999999999999999999999887 2222211
Q ss_pred ccccccccccccccccchhhhhchhHHHHHHhhhccccccccccccCCCCCCCCCCCCCCCccccCCCcccCCCcccchh
Q 000305 789 NTYLVTTGKRNRKMNAASLDILGEASEIAAAAQVDGRQLISSGRISSGGRGDSRTSLGDDGIIERSSSFDVIGGERETAA 868 (1696)
Q Consensus 789 ~nyL~~sgkkNre~naASlDilgaaS~~Aa~a~~a~~~~~sS~~i~~~g~~esk~~e~~dg~~erss~~D~~G~ERETva 868 (1696)
.+++-.. .. |+ |+.+.... +..+|..--|..-|.. |...+--|++--
T Consensus 258 ~~~~E~~---~~--n~------~~~~d~~~-~~~a~~~~ec~~c~~y---------------------f~~~~vpRp~sl 304 (534)
T KOG1194|consen 258 ENHLERV---PS--NC------GAKSDLLI-LNRAMSRHECKPCILY---------------------FRLMRVPRPASL 304 (534)
T ss_pred Ccchhhc---cc--cC------cchhhHHH-HhhhhhccCccCceee---------------------eeccCCCChhHH
Confidence 1222100 00 10 11111110 0011100001110100 111111122210
Q ss_pred ccccccccccccccccccccccC--CCCc--ccch-hhhhccccccccCCCCcccccccCCCCCCcccCCCCCCCCCCHH
Q 000305 869 ADVLAGICGSLSSEAMSSCITSS--VDPA--EGQR-DWRRQKADSVMRLPSTSDVTQNVDDDTCSDESCGEMDPSDWTDE 943 (1696)
Q Consensus 869 AdvkAgItgSmSsEa~ssc~TtS--vDP~--~G~r-e~K~~Kv~s~~~~P~t~dvtq~~deet~Sd~S~gEm~ssrWTdE 943 (1696)
-.++++ ..-.+.|-+|...- .|-. --.+ .--|++..++ .+.. +.+.++......-.| .|+ .+||.+
T Consensus 305 r~~~~~---rqR~~v~~p~n~k~~~kd~e~~s~~~~v~~~~~r~~~--~~q~--ve~~Ie~dkipes~c-~~n-~~~~T~ 375 (534)
T KOG1194|consen 305 RALTKR---RQRLEVMEPANIKGIGKDKEEDSDIMVVDDCLLRKPS--GPQI--VEQSIEADKIPESTC-RMN-RCFDTP 375 (534)
T ss_pred HHHHHH---HhhhhhccCcchhhhhhhHHHHHHHHHHHHHHhhccc--hhhH--hhcccccCCCCchhh-hhc-cccCcH
Confidence 001110 00011111111000 0000 0000 0000110000 0111 122222222221123 233 899999
Q ss_pred HHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhCCCccccCCC-CCC
Q 000305 944 EKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSKARKCLGLDLIHTGRG-NVG 998 (1696)
Q Consensus 944 Ek~lFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~kyRKrLnLD~il~e~~-~~g 998 (1696)
|..++++++++||++|..|...||.+++.|+++||.+|++|++|+.++++|+ ++|
T Consensus 376 ~~la~v~~I~~~~~~~~pl~wrik~t~cmee~e~l~~~~Rr~mfea~~~~s~v~~g 431 (534)
T KOG1194|consen 376 AALALIDNIKRKHHMCVPLVWRVKQTKCMEENEILNEEARRQMFEATMTYSRVPKG 431 (534)
T ss_pred HHHHHHHHHHHhccCcchhhhHhcCcchhhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999999999999999999999999999999999999999999999999986 444
No 4
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.01 E-value=4.9e-10 Score=95.45 Aligned_cols=45 Identities=33% Similarity=0.674 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCC-hHHHHHHhC-CCCHHHHHHHHHHHH
Q 000305 938 SDWTDEEKSIFIQAVTSYGKD-FSMIARCIR-TRSRDQCKVFFSKAR 982 (1696)
Q Consensus 938 srWTdEEk~lFleaL~kYGKD-WkaIA~~VG-TKTv~QcK~FY~kyR 982 (1696)
..||++|.++|++|+.+||.+ |.+||+.|+ +||..||++||++|+
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 479999999999999999999 999999999 999999999999984
No 5
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=98.92 E-value=7.3e-10 Score=126.87 Aligned_cols=61 Identities=30% Similarity=0.568 Sum_probs=56.2
Q ss_pred hcccCCCCCHHHHHHHHHHHHhcCCCHHHH-HhhcCCCChhHHHHHhhhcccCcChHHHHhh
Q 000305 717 ERAMINPWTSEEREIFVDKLATFGKDFRKI-ASFLNYKTTADCVEFYYKNHKSDCFEKLKKK 777 (1696)
Q Consensus 717 erq~in~WTEEEkeiF~EKylqhPKnFGkI-As~Lp~KTvsDCVlfYYltKKs~nYKkLlrk 777 (1696)
.|..+..|+++|++.|.+.+..|+|+|++| |..+++|++.+||.|||+|||...|......
T Consensus 273 ~rd~l~~wsEeEcr~FEegl~~yGKDF~lIr~nkvrtRsvgElVeyYYlWKkSeryd~~~qq 334 (445)
T KOG4329|consen 273 VRDDLSGWSEEECRNFEEGLELYGKDFHLIRANKVRTRSVGELVEYYYLWKKSERYDVFAQQ 334 (445)
T ss_pred cccccccCCHHHHHHHHHHHHHhcccHHHHHhcccccchHHHHHHHHHHhhcCcchhhHhhh
Confidence 356778999999999999999999999999 8999999999999999999999999876654
No 6
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=98.81 E-value=2.8e-09 Score=129.33 Aligned_cols=54 Identities=37% Similarity=0.594 Sum_probs=50.9
Q ss_pred cccCCCCCHHHHHHHHHHHHhcCCCHHHHHhhcCCCChhHHHHHhhhcccCcCh
Q 000305 718 RAMINPWTSEEREIFVDKLATFGKDFRKIASFLNYKTTADCVEFYYKNHKSDCF 771 (1696)
Q Consensus 718 rq~in~WTEEEkeiF~EKylqhPKnFGkIAs~Lp~KTvsDCVlfYYltKKs~nY 771 (1696)
+...+.||+.|+.+|.++|.+|-|||-+|+..|+.|||++||+|||.|||...|
T Consensus 616 Y~gSd~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCVeyYYtWKK~~~~ 669 (907)
T KOG4167|consen 616 YAGSDKWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCVEYYYTWKKIMRL 669 (907)
T ss_pred ecCcccccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHHHHHHHHHHhccc
Confidence 467789999999999999999999999999999999999999999999999744
No 7
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=98.80 E-value=7.6e-09 Score=92.97 Aligned_cols=47 Identities=30% Similarity=0.434 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHHHHHhCC-Ch---HHHHHHhC-CC-CHHHHHHHHHHHHHH
Q 000305 938 SDWTDEEKSIFIQAVTSYGK-DF---SMIARCIR-TR-SRDQCKVFFSKARKC 984 (1696)
Q Consensus 938 srWTdEEk~lFleaL~kYGK-DW---kaIA~~VG-TK-Tv~QcK~FY~kyRKr 984 (1696)
-+||+|||.+|++||..||+ || ++|+++++ ++ |..||++|+|||+-+
T Consensus 4 ~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k 56 (57)
T TIGR01557 4 VVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK 56 (57)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 58999999999999999999 99 99999876 78 999999999999854
No 8
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.60 E-value=7.9e-08 Score=78.37 Aligned_cols=46 Identities=30% Similarity=0.690 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHHHHHHhC-CChHHHHHHhCCCCHHHHHHHHHHHHH
Q 000305 938 SDWTDEEKSIFIQAVTSYG-KDFSMIARCIRTRSRDQCKVFFSKARK 983 (1696)
Q Consensus 938 srWTdEEk~lFleaL~kYG-KDWkaIA~~VGTKTv~QcK~FY~kyRK 983 (1696)
..||.+|..+|++++.+|| .+|..||..+++||..||+.+|+++.+
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999 999999999999999999999998754
No 9
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.57 E-value=1.2e-07 Score=76.51 Aligned_cols=43 Identities=30% Similarity=0.692 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHHHHhC-CChHHHHHHhCCCCHHHHHHHHHHH
Q 000305 939 DWTDEEKSIFIQAVTSYG-KDFSMIARCIRTRSRDQCKVFFSKA 981 (1696)
Q Consensus 939 rWTdEEk~lFleaL~kYG-KDWkaIA~~VGTKTv~QcK~FY~ky 981 (1696)
.||.+|..+|++++.+|| .+|..||+.+++||..||+.+|+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence 499999999999999999 9999999999999999999999876
No 10
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=98.45 E-value=1.9e-07 Score=114.02 Aligned_cols=53 Identities=25% Similarity=0.606 Sum_probs=50.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhCCC
Q 000305 936 DPSDWTDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSKARKCLGLD 988 (1696)
Q Consensus 936 ~ssrWTdEEk~lFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~kyRKrLnLD 988 (1696)
+++.||..|+.+|.+||-.|-|||..|+++|.+|||+||.+|||.|||...|+
T Consensus 618 gSd~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCVeyYYtWKK~~~~~ 670 (907)
T KOG4167|consen 618 GSDKWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCVEYYYTWKKIMRLG 670 (907)
T ss_pred CcccccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHHHHHHHHHHhccch
Confidence 46899999999999999999999999999999999999999999999988883
No 11
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=98.39 E-value=4.2e-07 Score=77.70 Aligned_cols=45 Identities=33% Similarity=0.637 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCC-HHHHHhhcC-CCChhHHHHHhhhcc
Q 000305 722 NPWTSEEREIFVDKLATFGKD-FRKIASFLN-YKTTADCVEFYYKNH 766 (1696)
Q Consensus 722 n~WTEEEkeiF~EKylqhPKn-FGkIAs~Lp-~KTvsDCVlfYYltK 766 (1696)
..||++|.++|.+++.+||++ |.+||..|+ +||..+|..|||..+
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 479999999999999999999 999999999 999999999999754
No 12
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.21 E-value=2.4e-06 Score=69.67 Aligned_cols=46 Identities=30% Similarity=0.575 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHHHHHhcC-CCHHHHHhhcCCCChhHHHHHhhhccc
Q 000305 722 NPWTSEEREIFVDKLATFG-KDFRKIASFLNYKTTADCVEFYYKNHK 767 (1696)
Q Consensus 722 n~WTEEEkeiF~EKylqhP-KnFGkIAs~Lp~KTvsDCVlfYYltKK 767 (1696)
..||++|..+|.+.+.+|+ ++|..||..|+.||..+|..+||..++
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999 999999999999999999999998654
No 13
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=98.16 E-value=3.2e-06 Score=74.53 Aligned_cols=41 Identities=32% Similarity=0.718 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHH
Q 000305 940 WTDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSK 980 (1696)
Q Consensus 940 WTdEEk~lFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~k 980 (1696)
||++|..++++++.+||.+|..||+++|+||..||+..|.+
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~ 41 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRN 41 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988
No 14
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=97.98 E-value=1.2e-05 Score=64.97 Aligned_cols=43 Identities=33% Similarity=0.658 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHHHHhcC-CCHHHHHhhcCCCChhHHHHHhhhc
Q 000305 723 PWTSEEREIFVDKLATFG-KDFRKIASFLNYKTTADCVEFYYKN 765 (1696)
Q Consensus 723 ~WTEEEkeiF~EKylqhP-KnFGkIAs~Lp~KTvsDCVlfYYlt 765 (1696)
.||++|.+.|...+..|| ++|..||..++.||..+|..|||..
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence 499999999999999999 9999999999999999999999864
No 15
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=97.57 E-value=4.1e-05 Score=90.72 Aligned_cols=59 Identities=32% Similarity=0.713 Sum_probs=54.1
Q ss_pred cccCCCCCHHHHHHHHHHHHhcCCCHHHH-HhhcCCCChhHHHHHhhhcccCcChHHHHh
Q 000305 718 RAMINPWTSEEREIFVDKLATFGKDFRKI-ASFLNYKTTADCVEFYYKNHKSDCFEKLKK 776 (1696)
Q Consensus 718 rq~in~WTEEEkeiF~EKylqhPKnFGkI-As~Lp~KTvsDCVlfYYltKKs~nYKkLlr 776 (1696)
|+.+..|+.-|..+|.+++-.|+|+|.-| +.|||-|+..+.|+|||+||-+..|-+-.|
T Consensus 282 RDemEEWSasEanLFEeALeKyGKDFndIrqdfLPWKSl~sIveyYYmwKttdRYvqqKr 341 (693)
T KOG3554|consen 282 RDEMEEWSASEANLFEEALEKYGKDFNDIRQDFLPWKSLTSIVEYYYMWKTTDRYVQQKR 341 (693)
T ss_pred hhhhhhccchhhHHHHHHHHHhcccHHHHHHhhcchHHHHHHHHHHHHHhhhhHHHHHHh
Confidence 35677899999999999999999999999 999999999999999999999999966544
No 16
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=97.43 E-value=0.00013 Score=87.17 Aligned_cols=42 Identities=26% Similarity=0.748 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHH
Q 000305 938 SDWTDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFS 979 (1696)
Q Consensus 938 srWTdEEk~lFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~ 979 (1696)
..||.+|..+.++|+..||-||.+||++|||||+.||.-+|-
T Consensus 280 k~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL 321 (531)
T COG5259 280 KNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFL 321 (531)
T ss_pred ccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHH
Confidence 589999999999999999999999999999999999998774
No 17
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=97.38 E-value=0.00054 Score=80.14 Aligned_cols=55 Identities=31% Similarity=0.513 Sum_probs=49.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCChHHHHHH-hCCCCHHHHHHHHHHHHHHhCCCcccc
Q 000305 938 SDWTDEEKSIFIQAVTSYGKDFSMIARC-IRTRSRDQCKVFFSKARKCLGLDLIHT 992 (1696)
Q Consensus 938 srWTdEEk~lFleaL~kYGKDWkaIA~~-VGTKTv~QcK~FY~kyRKrLnLD~il~ 992 (1696)
..|+++|-..|.+||+.|||||..|.+. |.|||+--|..|||-|||.-+-|...+
T Consensus 278 ~~wsEeEcr~FEegl~~yGKDF~lIr~nkvrtRsvgElVeyYYlWKkSeryd~~~q 333 (445)
T KOG4329|consen 278 SGWSEEECRNFEEGLELYGKDFHLIRANKVRTRSVGELVEYYYLWKKSERYDVFAQ 333 (445)
T ss_pred ccCCHHHHHHHHHHHHHhcccHHHHHhcccccchHHHHHHHHHHhhcCcchhhHhh
Confidence 6899999999999999999999999876 999999999999999998766665443
No 18
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=97.37 E-value=0.00014 Score=86.62 Aligned_cols=59 Identities=27% Similarity=0.439 Sum_probs=54.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhCCCccccCCC
Q 000305 937 PSDWTDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSKARKCLGLDLIHTGRG 995 (1696)
Q Consensus 937 ssrWTdEEk~lFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~kyRKrLnLD~il~e~~ 995 (1696)
..+||.||+.+|-+|+..|||+|.+|.+++.-|+.+-++.|||.++|.+.-+..+-..+
T Consensus 187 ~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~~~~~s~~~~h~ 245 (534)
T KOG1194|consen 187 PDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKTREYDSQMNRHR 245 (534)
T ss_pred cccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999888777665443
No 19
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.28 E-value=0.00033 Score=83.40 Aligned_cols=48 Identities=27% Similarity=0.574 Sum_probs=45.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-ChHHHHHHhCCCCHHHHHHHHHHHHHH
Q 000305 937 PSDWTDEEKSIFIQAVTSYGK-DFSMIARCIRTRSRDQCKVFFSKARKC 984 (1696)
Q Consensus 937 ssrWTdEEk~lFleaL~kYGK-DWkaIA~~VGTKTv~QcK~FY~kyRKr 984 (1696)
...||.+|--++++|+.+||- ||.-||++|||||-.+||.||.|+.-.
T Consensus 72 ~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv~ 120 (438)
T KOG0457|consen 72 DPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFVN 120 (438)
T ss_pred CCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHhc
Confidence 478999999999999999999 999999999999999999999999743
No 20
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=97.06 E-value=0.00078 Score=59.65 Aligned_cols=41 Identities=32% Similarity=0.718 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHhcCCCHHHHHhhcCCCChhHHHHHhhh
Q 000305 724 WTSEEREIFVDKLATFGKDFRKIASFLNYKTTADCVEFYYK 764 (1696)
Q Consensus 724 WTEEEkeiF~EKylqhPKnFGkIAs~Lp~KTvsDCVlfYYl 764 (1696)
||++|-++.++.+..|+.+|..||.+|+.||..+|...|+.
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~ 41 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRN 41 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999976
No 21
>PLN03212 Transcription repressor MYB5; Provisional
Probab=97.01 E-value=0.002 Score=72.76 Aligned_cols=47 Identities=19% Similarity=0.352 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHH
Q 000305 938 SDWTDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSKARKC 984 (1696)
Q Consensus 938 srWTdEEk~lFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~kyRKr 984 (1696)
..||.||-++.++....||..|..||+.|..||..|||++|+.+-++
T Consensus 79 gpWT~EED~lLlel~~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK 125 (249)
T PLN03212 79 GGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRK 125 (249)
T ss_pred CCCChHHHHHHHHHHHhccccHHHHHhhcCCCCHHHHHHHHHHHHhH
Confidence 68999999999999999999999999999999999999999876443
No 22
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=96.91 E-value=0.001 Score=81.24 Aligned_cols=44 Identities=30% Similarity=0.706 Sum_probs=41.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHH
Q 000305 936 DPSDWTDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFS 979 (1696)
Q Consensus 936 ~ssrWTdEEk~lFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~ 979 (1696)
....||++|..+.++|+..||-||.+||.+|||||..||.-+|-
T Consensus 252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL 295 (506)
T KOG1279|consen 252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFL 295 (506)
T ss_pred CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHH
Confidence 35799999999999999999999999999999999999997764
No 23
>PLN03091 hypothetical protein; Provisional
Probab=96.57 E-value=0.0058 Score=73.60 Aligned_cols=44 Identities=18% Similarity=0.400 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHH
Q 000305 938 SDWTDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSKA 981 (1696)
Q Consensus 938 srWTdEEk~lFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~ky 981 (1696)
..||.||-.+.++...+||..|..||+.|..||..|||++|+..
T Consensus 68 gpWT~EED~lLLeL~k~~GnKWskIAk~LPGRTDnqIKNRWnsl 111 (459)
T PLN03091 68 GTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSC 111 (459)
T ss_pred CCCCHHHHHHHHHHHHHhCcchHHHHHhcCCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999988765
No 24
>PLN03212 Transcription repressor MYB5; Provisional
Probab=96.38 E-value=0.0052 Score=69.62 Aligned_cols=46 Identities=17% Similarity=0.412 Sum_probs=42.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC-ChHHHHHHhC-CCCHHHHHHHHHHH
Q 000305 936 DPSDWTDEEKSIFIQAVTSYGK-DFSMIARCIR-TRSRDQCKVFFSKA 981 (1696)
Q Consensus 936 ~ssrWTdEEk~lFleaL~kYGK-DWkaIA~~VG-TKTv~QcK~FY~ky 981 (1696)
....||.||=++.++++.+||. +|..||+.+| .||..|||.=|.+|
T Consensus 24 KRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~ 71 (249)
T PLN03212 24 KRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNY 71 (249)
T ss_pred cCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHh
Confidence 3579999999999999999995 8999999997 89999999988887
No 25
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=96.10 E-value=0.0051 Score=75.53 Aligned_cols=49 Identities=22% Similarity=0.609 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCChHHH----------HHHhCCCCHHHHHHHHHHHHHHhC
Q 000305 938 SDWTDEEKSIFIQAVTSYGKDFSMI----------ARCIRTRSRDQCKVFFSKARKCLG 986 (1696)
Q Consensus 938 srWTdEEk~lFleaL~kYGKDWkaI----------A~~VGTKTv~QcK~FY~kyRKrLn 986 (1696)
.-||-.|.+-|..||++|||||.+| -.-+..||-.|++.|||+-..+++
T Consensus 89 taWt~~E~~~Ffdal~~~GKdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~ 147 (782)
T KOG4468|consen 89 TAWTHQEEESFFDALRQVGKDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMN 147 (782)
T ss_pred cccchhhHHHHHHHHHHhcccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHH
Confidence 6899999999999999999999998 455678999999999888765544
No 26
>PLN03091 hypothetical protein; Provisional
Probab=95.49 E-value=0.016 Score=70.02 Aligned_cols=45 Identities=20% Similarity=0.472 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-ChHHHHHHhC-CCCHHHHHHHHHHH
Q 000305 937 PSDWTDEEKSIFIQAVTSYGK-DFSMIARCIR-TRSRDQCKVFFSKA 981 (1696)
Q Consensus 937 ssrWTdEEk~lFleaL~kYGK-DWkaIA~~VG-TKTv~QcK~FY~ky 981 (1696)
..+||.||=++.++++.+||. +|..||+.+| .||..|||.=|.+|
T Consensus 14 Kg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~Ny 60 (459)
T PLN03091 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhc
Confidence 478999999999999999997 8999999997 89999999888776
No 27
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=95.46 E-value=0.027 Score=51.50 Aligned_cols=44 Identities=18% Similarity=0.379 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCC-CH---HHHHhhcC-CC-ChhHHHHHhhh
Q 000305 721 INPWTSEEREIFVDKLATFGK-DF---RKIASFLN-YK-TTADCVEFYYK 764 (1696)
Q Consensus 721 in~WTEEEkeiF~EKylqhPK-nF---GkIAs~Lp-~K-TvsDCVlfYYl 764 (1696)
.-.||+|||..|++++..++. ++ .+|++.+. .+ |..+|--|+-.
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QK 52 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQK 52 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHH
Confidence 347999999999999999999 99 99999887 56 99999888743
No 28
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=95.14 E-value=0.03 Score=66.39 Aligned_cols=47 Identities=32% Similarity=0.559 Sum_probs=42.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHH
Q 000305 936 DPSDWTDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSKAR 982 (1696)
Q Consensus 936 ~ssrWTdEEk~lFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~kyR 982 (1696)
+..+||.+|+++|.+||...|-||..|+.+..+|..-|||.=|.+--
T Consensus 364 ~~~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Ee 410 (507)
T COG5118 364 GALRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEE 410 (507)
T ss_pred CCCcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHh
Confidence 35899999999999999999999999999999999999997666543
No 29
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=94.98 E-value=0.019 Score=69.06 Aligned_cols=51 Identities=29% Similarity=0.591 Sum_probs=45.3
Q ss_pred CCCcccCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHH-HHhCCCCHHHHHHHHHHHH
Q 000305 926 TCSDESCGEMDPSDWTDEEKSIFIQAVTSYGKDFSMIA-RCIRTRSRDQCKVFFSKAR 982 (1696)
Q Consensus 926 t~Sd~S~gEm~ssrWTdEEk~lFleaL~kYGKDWkaIA-~~VGTKTv~QcK~FY~kyR 982 (1696)
+|-| || ..|+.-|..+|.+||.+|||||.-|- +++.=|+..-|.+|||-||
T Consensus 280 LCRD----em--EEWSasEanLFEeALeKyGKDFndIrqdfLPWKSl~sIveyYYmwK 331 (693)
T KOG3554|consen 280 LCRD----EM--EEWSASEANLFEEALEKYGKDFNDIRQDFLPWKSLTSIVEYYYMWK 331 (693)
T ss_pred eehh----hh--hhccchhhHHHHHHHHHhcccHHHHHHhhcchHHHHHHHHHHHHHh
Confidence 5666 55 68999999999999999999999985 5688999999999999885
No 30
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=94.88 E-value=0.046 Score=63.83 Aligned_cols=47 Identities=21% Similarity=0.483 Sum_probs=44.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-ChHHHHHHhCCCCHHHHHHHHHHHHH
Q 000305 937 PSDWTDEEKSIFIQAVTSYGK-DFSMIARCIRTRSRDQCKVFFSKARK 983 (1696)
Q Consensus 937 ssrWTdEEk~lFleaL~kYGK-DWkaIA~~VGTKTv~QcK~FY~kyRK 983 (1696)
-..|+.+|-.+|++|+..-|- +|.-||+.||+|+-.-||+||.|+.-
T Consensus 63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~ 110 (432)
T COG5114 63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD 110 (432)
T ss_pred CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 478999999999999999998 99999999999999999999999863
No 31
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=93.42 E-value=0.1 Score=63.59 Aligned_cols=54 Identities=19% Similarity=0.469 Sum_probs=48.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCHHHHHhhcCCCChhHHHHHhhhcccCcChHHHHh
Q 000305 723 PWTSEEREIFVDKLATFGKDFRKIASFLNYKTTADCVEFYYKNHKSDCFEKLKK 776 (1696)
Q Consensus 723 ~WTEEEkeiF~EKylqhPKnFGkIAs~Lp~KTvsDCVlfYYltKKs~nYKkLlr 776 (1696)
+||.+|--+..+++-.|+.+|-+||.++++||+.|||++|-.---.++|.....
T Consensus 281 ~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~LPieD~~l~k~~ 334 (531)
T COG5259 281 NWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQLPIEDNYLSKGD 334 (531)
T ss_pred cccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcCCcchhhhhccc
Confidence 899999999999999999999999999999999999999987777777754444
No 32
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=92.35 E-value=0.25 Score=55.54 Aligned_cols=49 Identities=24% Similarity=0.428 Sum_probs=44.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHH-HHHhC
Q 000305 938 SDWTDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSKA-RKCLG 986 (1696)
Q Consensus 938 srWTdEEk~lFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~ky-RKrLn 986 (1696)
..||+||-.+-+++=.+||--|..||+.++.||---||+|.... |||+.
T Consensus 63 g~fT~eEe~~Ii~lH~~~GNrWs~IA~~LPGRTDNeIKN~Wnt~lkkkl~ 112 (238)
T KOG0048|consen 63 GNFSDEEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNHWNTHLKKKLL 112 (238)
T ss_pred CCCCHHHHHHHHHHHHHHCcHHHHHHhhCCCcCHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999998666 55543
No 33
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=92.11 E-value=0.17 Score=63.33 Aligned_cols=44 Identities=32% Similarity=0.743 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHHHHhC-CChHHHHHHhCCCCHHHHHHHHHHH
Q 000305 938 SDWTDEEKSIFIQAVTSYG-KDFSMIARCIRTRSRDQCKVFFSKA 981 (1696)
Q Consensus 938 srWTdEEk~lFleaL~kYG-KDWkaIA~~VGTKTv~QcK~FY~ky 981 (1696)
.+||++|-.+.+.|+.+|| |||.+|-..|.+|+.+|||.-|-+-
T Consensus 361 g~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nv 405 (939)
T KOG0049|consen 361 GRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNV 405 (939)
T ss_pred CCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHH
Confidence 7999999999999999995 5999999999999999999877664
No 34
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=90.60 E-value=0.33 Score=60.33 Aligned_cols=56 Identities=18% Similarity=0.441 Sum_probs=48.9
Q ss_pred ccCCCCCHHHHHHHHHHHHhcCCCHHHHHhhcCCCChhHHHHHhhhcccCcChHHH
Q 000305 719 AMINPWTSEEREIFVDKLATFGKDFRKIASFLNYKTTADCVEFYYKNHKSDCFEKL 774 (1696)
Q Consensus 719 q~in~WTEEEkeiF~EKylqhPKnFGkIAs~Lp~KTvsDCVlfYYltKKs~nYKkL 774 (1696)
.....||++|--+-.++...|.-+|.+||.+++.||..+||.++-.-=..+.|..-
T Consensus 251 ~~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~LPieD~~l~~ 306 (506)
T KOG1279|consen 251 SARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRLPIEDPYLAK 306 (506)
T ss_pred cCCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhcCccchhhhh
Confidence 45578999999999999999999999999999999999999999666555555544
No 35
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=89.39 E-value=0.24 Score=61.71 Aligned_cols=49 Identities=35% Similarity=0.604 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCHHHH----------HhhcCCCChhHHHHHhhhcccCc
Q 000305 721 INPWTSEEREIFVDKLATFGKDFRKI----------ASFLNYKTTADCVEFYYKNHKSD 769 (1696)
Q Consensus 721 in~WTEEEkeiF~EKylqhPKnFGkI----------As~Lp~KTvsDCVlfYYltKKs~ 769 (1696)
...||-+|.+.|.+++.+|+|+|.+| -....-||.-+.-.|||+..+.+
T Consensus 88 ktaWt~~E~~~Ffdal~~~GKdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m 146 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVGKDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRM 146 (782)
T ss_pred ccccchhhHHHHHHHHHHhcccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHH
Confidence 45899999999999999999999999 33345678888888888765443
No 36
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=85.92 E-value=1.1 Score=59.86 Aligned_cols=50 Identities=20% Similarity=0.399 Sum_probs=43.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC-ChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 000305 936 DPSDWTDEEKSIFIQAVTSYGK-DFSMIARCIRTRSRDQCKVFFSKARKCL 985 (1696)
Q Consensus 936 ~ssrWTdEEk~lFleaL~kYGK-DWkaIA~~VGTKTv~QcK~FY~kyRKrL 985 (1696)
+=..||..+-..|+.|..+||| |+.+||..|++||+..|+.|+..+-+|+
T Consensus 823 gf~~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y~~~f~~~~ 873 (1033)
T PLN03142 823 GFSTWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFWERY 873 (1033)
T ss_pred CcCcccHHHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 3478999999999999999999 7999999999999999997766655443
No 37
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=85.46 E-value=0.95 Score=55.25 Aligned_cols=44 Identities=30% Similarity=0.703 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHhcC-CCHHHHHhhcCCCChhHHHHHhhhcc
Q 000305 723 PWTSEEREIFVDKLATFG-KDFRKIASFLNYKTTADCVEFYYKNH 766 (1696)
Q Consensus 723 ~WTEEEkeiF~EKylqhP-KnFGkIAs~Lp~KTvsDCVlfYYltK 766 (1696)
.||.+|-=+|+++..+|+ -||+-||.+++.||-.+|..||+..=
T Consensus 74 ~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~f 118 (438)
T KOG0457|consen 74 SWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHF 118 (438)
T ss_pred CCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHH
Confidence 699999999999999998 79999999999999999999997543
No 38
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=83.51 E-value=1.1 Score=55.56 Aligned_cols=44 Identities=30% Similarity=0.570 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHHHhCC-ChHHHHHHhCCCCHHHHHHHHHHH
Q 000305 938 SDWTDEEKSIFIQAVTSYGK-DFSMIARCIRTRSRDQCKVFFSKA 981 (1696)
Q Consensus 938 srWTdEEk~lFleaL~kYGK-DWkaIA~~VGTKTv~QcK~FY~ky 981 (1696)
.-|+..|-++..-|+.+||+ -|..|+..+..||..||++=|++|
T Consensus 8 gvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ 52 (617)
T KOG0050|consen 8 GVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEW 52 (617)
T ss_pred ceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 67999999999999999999 599999999999999999888887
No 39
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=78.08 E-value=2.4 Score=47.85 Aligned_cols=44 Identities=23% Similarity=0.514 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHHHhCC-ChHHHHHHhC-CCCHHHHHHHHHHH
Q 000305 938 SDWTDEEKSIFIQAVTSYGK-DFSMIARCIR-TRSRDQCKVFFSKA 981 (1696)
Q Consensus 938 srWTdEEk~lFleaL~kYGK-DWkaIA~~VG-TKTv~QcK~FY~ky 981 (1696)
..||.||=++.++-|.+||. +|..|++.+| .|+-.|||-=..+|
T Consensus 10 GpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~Ny 55 (238)
T KOG0048|consen 10 GPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNY 55 (238)
T ss_pred CCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcc
Confidence 79999999999999999999 6999999999 99999998767666
No 40
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=76.52 E-value=3.1 Score=39.26 Aligned_cols=50 Identities=26% Similarity=0.495 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHHHHHH------hC--------CChHHHHHHhC----CCCHHHHHHHHHHHHHHhCC
Q 000305 938 SDWTDEEKSIFIQAVTS------YG--------KDFSMIARCIR----TRSRDQCKVFFSKARKCLGL 987 (1696)
Q Consensus 938 srWTdEEk~lFleaL~k------YG--------KDWkaIA~~VG----TKTv~QcK~FY~kyRKrLnL 987 (1696)
..||++|...|++.... |+ .-|..||..+. .||..||+.=+.+-++++.-
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~ 69 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKK 69 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 47999999999998777 32 15999999875 69999999776666655543
No 41
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=75.04 E-value=3.7 Score=52.37 Aligned_cols=50 Identities=24% Similarity=0.355 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-ChHHHHHHhCCCCHHH---HHHHHHHHHHHhC
Q 000305 937 PSDWTDEEKSIFIQAVTSYGK-DFSMIARCIRTRSRDQ---CKVFFSKARKCLG 986 (1696)
Q Consensus 937 ssrWTdEEk~lFleaL~kYGK-DWkaIA~~VGTKTv~Q---cK~FY~kyRKrLn 986 (1696)
..+||-.|-+..+.++.+||+ .|.+||.++|.||..| ||.-|-.+++++-
T Consensus 412 ~~rW~l~edeqL~~~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~~~k~rl~ 465 (939)
T KOG0049|consen 412 VERWTLVEDEQLLYAVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRLIAAKLRLA 465 (939)
T ss_pred cCceeecchHHHHHHHHHHccchHHHHHHHccccchhHHHHHHHHHHHHHHHHh
Confidence 379999999999999999999 8999999999999955 4555666665543
No 42
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=71.22 E-value=4.2 Score=51.82 Aligned_cols=46 Identities=24% Similarity=0.475 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHHH-------Hh-------------------CCChHHHHHHhCCCCHHHHHHHHHHHH
Q 000305 937 PSDWTDEEKSIFIQAVT-------SY-------------------GKDFSMIARCIRTRSRDQCKVFFSKAR 982 (1696)
Q Consensus 937 ssrWTdEEk~lFleaL~-------kY-------------------GKDWkaIA~~VGTKTv~QcK~FY~kyR 982 (1696)
..+||-+|-+..++.+. +| +-+|..|++++|||+..|||..|++--
T Consensus 436 r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~ 507 (607)
T KOG0051|consen 436 RGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLT 507 (607)
T ss_pred cCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHH
Confidence 47999999999999984 44 347999999999999999998877753
No 43
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=68.26 E-value=14 Score=34.68 Aligned_cols=48 Identities=25% Similarity=0.348 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHHHHHHHh-----C------------CChHHHHHHh-----CCCCHHHHHHHHHHHHHHh
Q 000305 938 SDWTDEEKSIFIQAVTSY-----G------------KDFSMIARCI-----RTRSRDQCKVFFSKARKCL 985 (1696)
Q Consensus 938 srWTdEEk~lFleaL~kY-----G------------KDWkaIA~~V-----GTKTv~QcK~FY~kyRKrL 985 (1696)
.+||.+|..++++-+.+| | +-|..|+..+ +.||..|+|..|.+++...
T Consensus 3 ~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~ 72 (78)
T PF13873_consen 3 PNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKA 72 (78)
T ss_pred CCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence 589999999999988887 4 3588898876 3699999999999997654
No 44
>PLN03162 golden-2 like transcription factor; Provisional
Probab=68.02 E-value=10 Score=46.09 Aligned_cols=49 Identities=27% Similarity=0.335 Sum_probs=40.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC---hHHHHHHhC--CCCHHHHHHHHHHHHHHh
Q 000305 937 PSDWTDEEKSIFIQAVTSYGKD---FSMIARCIR--TRSRDQCKVFFSKARKCL 985 (1696)
Q Consensus 937 ssrWTdEEk~lFleaL~kYGKD---WkaIA~~VG--TKTv~QcK~FY~kyRKrL 985 (1696)
.-+||.|=|++|++|+.+-|-+ =++|=++++ .=|..+||+|.||||-.+
T Consensus 237 RLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~r 290 (526)
T PLN03162 237 KVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHR 290 (526)
T ss_pred cccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhc
Confidence 3799999999999999999943 344777765 579999999999998543
No 45
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=64.35 E-value=14 Score=35.48 Aligned_cols=54 Identities=15% Similarity=0.194 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHHHh----CC---------ChHHHHHHhC-----CCCHHHHHHHHHHHHHHhCCCcccc
Q 000305 939 DWTDEEKSIFIQAVTSY----GK---------DFSMIARCIR-----TRSRDQCKVFFSKARKCLGLDLIHT 992 (1696)
Q Consensus 939 rWTdEEk~lFleaL~kY----GK---------DWkaIA~~VG-----TKTv~QcK~FY~kyRKrLnLD~il~ 992 (1696)
+||+++...|++.|.+. .+ .|..|++.+. ..|..||++.|...|+.+.+=.-|.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~~~~~l~ 72 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDYRIWKELR 72 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999988665 23 2777776543 4799999999999999888766444
No 46
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=60.38 E-value=2.7 Score=49.04 Aligned_cols=44 Identities=14% Similarity=-0.058 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHH
Q 000305 938 SDWTDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSKA 981 (1696)
Q Consensus 938 srWTdEEk~lFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~ky 981 (1696)
.+||.+++..|.++|..|++.|..|-.+++.++..|++.+.+.|
T Consensus 54 ~~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 97 (335)
T KOG0724|consen 54 PRRTPDSWDKFAEALPLEKRLEDKIEEYIGLVFDVNIRESGQKP 97 (335)
T ss_pred cccchhhhhHHHhcCccccccchhHHhhhhhHHHHhhhhccCCC
Confidence 56999999999999999999999999999999999999764444
No 47
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=56.77 E-value=13 Score=45.25 Aligned_cols=62 Identities=21% Similarity=0.363 Sum_probs=49.0
Q ss_pred eccCC---CCCcchHHHHhhcccCCCCCHHHHHHHHHHHHhcCCCHHHHHhhcCCCChhHHHHHhhh
Q 000305 701 FISSN---GLVEDPCAVEKERAMINPWTSEEREIFVDKLATFGKDFRKIASFLNYKTTADCVEFYYK 764 (1696)
Q Consensus 701 FiDtN---gLVeDP~av~Kerq~in~WTEEEkeiF~EKylqhPKnFGkIAs~Lp~KTvsDCVlfYYl 764 (1696)
+++.| .+|+ .+-|..++....||.+|.+.|-+++.+.+-+|.+|++.+|+|.-.+.-.-|-.
T Consensus 344 ~veen~~ar~vt--s~t~g~~~~~~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~ 408 (507)
T COG5118 344 VVEENPFARIVT--SSTFGKKKGALRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIK 408 (507)
T ss_pred Hhhccchhheee--cccccCCCCCCcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHH
Confidence 55666 3343 23355668889999999999999999999999999999999988777665533
No 48
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=56.36 E-value=8.9 Score=48.88 Aligned_cols=46 Identities=33% Similarity=0.616 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHH
Q 000305 936 DPSDWTDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSKA 981 (1696)
Q Consensus 936 ~ssrWTdEEk~lFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~ky 981 (1696)
...+||..|.++|.+++..+|-+|..|+.+-..|+..|||.=|.+=
T Consensus 408 ~~~~w~~se~e~fyka~~~~gs~~slis~l~p~R~rk~iK~K~~~e 453 (584)
T KOG2009|consen 408 ETDKWDASETELFYKALSERGSDFSLISNLFPLRDRKQIKAKFKKE 453 (584)
T ss_pred ccCcccchhhHHhhhHHhhhcccccccccccccccHHHHHHHHhhh
Confidence 3589999999999999999999999999999999999999655544
No 49
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=50.81 E-value=20 Score=46.09 Aligned_cols=46 Identities=22% Similarity=0.394 Sum_probs=40.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHH
Q 000305 937 PSDWTDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSKARK 983 (1696)
Q Consensus 937 ssrWTdEEk~lFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~kyRK 983 (1696)
...||.+|-+....-..++|.+|..|+++||+ ....|+..+..|.+
T Consensus 384 rg~wt~ee~eeL~~l~~~~g~~W~~Ig~~lgr-~P~~crd~wr~~~~ 429 (607)
T KOG0051|consen 384 RGKWTPEEEEELKKLVVEHGNDWKEIGKALGR-MPMDCRDRWRQYVK 429 (607)
T ss_pred cCCCCcchHHHHHHHHHHhcccHHHHHHHHcc-CcHHHHHHHHHhhc
Confidence 47999999999999999999999999999975 56779988888764
No 50
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=39.68 E-value=41 Score=30.40 Aligned_cols=44 Identities=25% Similarity=0.355 Sum_probs=38.9
Q ss_pred HHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhCCCc
Q 000305 946 SIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSKARKCLGLDL 989 (1696)
Q Consensus 946 ~lFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~kyRKrLnLD~ 989 (1696)
+++.+|+...|.|=..|-+++.+++..|.+.-+..|++.+|-+.
T Consensus 4 ~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L 47 (66)
T PF00191_consen 4 ELLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDL 47 (66)
T ss_dssp HHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-H
T ss_pred HHHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHHH
Confidence 37888999999999999999999999999999999999888553
No 51
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=36.16 E-value=1.3e+02 Score=36.66 Aligned_cols=51 Identities=20% Similarity=0.453 Sum_probs=42.0
Q ss_pred CCCCCCHHHHHHHHHHHHHh-CC---ChHHHHHHhCCCCHHHHHHHHHHHHHHhC
Q 000305 936 DPSDWTDEEKSIFIQAVTSY-GK---DFSMIARCIRTRSRDQCKVFFSKARKCLG 986 (1696)
Q Consensus 936 ~ssrWTdEEk~lFleaL~kY-GK---DWkaIA~~VGTKTv~QcK~FY~kyRKrLn 986 (1696)
+...||..|+...+.+|+.. |. |...|++.|..|+.++|++|-+.-|.|.-
T Consensus 20 gp~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~~l~~Rs~aEI~~fl~~LK~rva 74 (344)
T PF11035_consen 20 GPAAWSAREKRQLLRLLQARRGQPEPDAAELAKELPGRSEAEIRDFLQQLKGRVA 74 (344)
T ss_pred CcccCcHHHHHHHHHHHHHhcCCCCcCHHHHHhhccCcCHHHHHHHHHHHHHHHH
Confidence 36899999999988888765 65 55568888999999999999998876543
No 52
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=32.84 E-value=32 Score=44.75 Aligned_cols=43 Identities=30% Similarity=0.448 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHH
Q 000305 938 SDWTDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSK 980 (1696)
Q Consensus 938 srWTdEEk~lFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~k 980 (1696)
.-|+-.|+.+|..+...||.++-.|++.++|||--||-+|-++
T Consensus 410 ~ew~~~ek~~fr~~~~~~~~n~c~Iar~l~~ktC~~v~~~~~~ 452 (739)
T KOG1079|consen 410 VEWNGAEKVLFRVGSTLYGTNRCSIARNLLTKTCRQVYEYEQK 452 (739)
T ss_pred cccchhhhHHHHhccccccchhhHHHHHhcchHHHHHHHHhhc
Confidence 4899999999999999999999999999999999999887653
No 53
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=29.47 E-value=79 Score=34.36 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChHHHHHHhC----CCCHHHHHHHHHHHHH
Q 000305 937 PSDWTDEEKSIFIQAVTSYGKDFSMIARCIR----TRSRDQCKVFFSKARK 983 (1696)
Q Consensus 937 ssrWTdEEk~lFleaL~kYGKDWkaIA~~VG----TKTv~QcK~FY~kyRK 983 (1696)
.-+=|..|......-+.+||-||.+++.-.. -.|..||+.-+.+|++
T Consensus 114 ~~~ls~~e~~~i~~Li~KhGdDy~aMarD~KLN~~Q~T~~qlrrki~~~k~ 164 (164)
T PF09420_consen 114 PRRLSEREIEYIEYLIEKHGDDYKAMARDRKLNYMQHTPGQLRRKIRKYKK 164 (164)
T ss_pred CCCCCHHHHHHHHHHHHHHCccHHHHhccCCCCcccCCHHHHHHHHHHhcC
Confidence 3566788888888889999999999999988 3899999988888863
No 54
>PF05263 DUF722: Protein of unknown function (DUF722); InterPro: IPR007927 This entry is represented by Bacteriophage bIL285, Orf38. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=29.35 E-value=96 Score=33.39 Aligned_cols=47 Identities=17% Similarity=0.199 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHHHHHh-CCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 000305 938 SDWTDEEKSIFIQAVTSY-GKDFSMIARCIRTRSRDQCKVFFSKARKCL 985 (1696)
Q Consensus 938 srWTdEEk~lFleaL~kY-GKDWkaIA~~VGTKTv~QcK~FY~kyRKrL 985 (1696)
..++++++.+|.-=...+ |..|-.||..+. .+..||+..++.+|..+
T Consensus 80 ~~l~de~k~Ii~lry~~r~~~TW~~IA~~l~-i~erta~r~~~~fK~~i 127 (130)
T PF05263_consen 80 ETLIDEEKRIIKLRYDRRSRRTWYQIAQKLH-ISERTARRWRDRFKNDI 127 (130)
T ss_pred HhhCHHHHHHHHHHHcccccchHHHHHHHhC-ccHHHHHHHHHHHHHHh
Confidence 578899999997777777 678999999995 99999999999988643
No 55
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=28.68 E-value=53 Score=41.88 Aligned_cols=47 Identities=23% Similarity=0.451 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHH
Q 000305 937 PSDWTDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSKARK 983 (1696)
Q Consensus 937 ssrWTdEEk~lFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~kyRK 983 (1696)
...|+.+|-...+..=.++|--|..||.+|+.+|..||.+.|.+--.
T Consensus 72 ~~~~~~eed~~li~l~~~~~~~wstia~~~d~rt~~~~~ery~~~~~ 118 (512)
T COG5147 72 KKNWSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVNTLE 118 (512)
T ss_pred cccccHHHHHHHHHHHHhcCchhhhhccccCccchHHHHHHHHHHhh
Confidence 47899999999999999999999999999999999999999887643
No 56
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=27.47 E-value=56 Score=41.71 Aligned_cols=45 Identities=29% Similarity=0.569 Sum_probs=41.7
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCHHHHHhhcCCCChhHHHHHhhh
Q 000305 720 MINPWTSEEREIFVDKLATFGKDFRKIASFLNYKTTADCVEFYYK 764 (1696)
Q Consensus 720 ~in~WTEEEkeiF~EKylqhPKnFGkIAs~Lp~KTvsDCVlfYYl 764 (1696)
..-.|+++|-++-.+-+-++|=.|..||..++.+|...||+.|-.
T Consensus 71 k~~~~~~eed~~li~l~~~~~~~wstia~~~d~rt~~~~~ery~~ 115 (512)
T COG5147 71 KKKNWSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVN 115 (512)
T ss_pred ccccccHHHHHHHHHHHHhcCchhhhhccccCccchHHHHHHHHH
Confidence 335799999999999999999999999999999999999999963
No 57
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=25.86 E-value=1.6e+02 Score=25.82 Aligned_cols=43 Identities=26% Similarity=0.340 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 000305 941 TDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSKARKCL 985 (1696)
Q Consensus 941 TdEEk~lFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~kyRKrL 985 (1696)
++.++.+|.. .-..|..|..||+.+| -|...|+..+++-++++
T Consensus 12 ~~~~r~i~~l-~~~~g~s~~eIa~~l~-~s~~~v~~~l~ra~~~L 54 (54)
T PF08281_consen 12 PERQREIFLL-RYFQGMSYAEIAEILG-ISESTVKRRLRRARKKL 54 (54)
T ss_dssp -HHHHHHHHH-HHTS---HHHHHHHCT-S-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHHCcCHHHHHHHHC-cCHHHHHHHHHHHHhhC
Confidence 3455555543 3456999999999997 78999999999888764
No 58
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=25.69 E-value=97 Score=26.69 Aligned_cols=46 Identities=22% Similarity=0.341 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhCCCc
Q 000305 941 TDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSKARKCLGLDL 989 (1696)
Q Consensus 941 TdEEk~lFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~kyRKrLnLD~ 989 (1696)
+.+++..++..+.. |.....||+.+| -+...|..+...|++ .|++-
T Consensus 3 ~~~~R~~ii~l~~~-G~s~~~ia~~lg-vs~~Tv~~w~kr~~~-~G~~g 48 (50)
T PF13384_consen 3 SEERRAQIIRLLRE-GWSIREIAKRLG-VSRSTVYRWIKRYRE-EGLEG 48 (50)
T ss_dssp -------HHHHHHH-T--HHHHHHHHT-S-HHHHHHHHT----------
T ss_pred chhHHHHHHHHHHC-CCCHHHHHHHHC-cCHHHHHHHHHHccc-ccccc
Confidence 45667778888888 999999999998 566667666666653 55554
No 59
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=23.01 E-value=1.2e+02 Score=36.07 Aligned_cols=40 Identities=30% Similarity=0.514 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHHH-----------HHhCCChHHHHHH---hC-CCCHHHHHHHH
Q 000305 938 SDWTDEEKSIFIQAV-----------TSYGKDFSMIARC---IR-TRSRDQCKVFF 978 (1696)
Q Consensus 938 srWTdEEk~lFleaL-----------~kYGKDWkaIA~~---VG-TKTv~QcK~FY 978 (1696)
.+|+.+|-..++++. .+ +..|..||+. .| -||..|||.=|
T Consensus 55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k-~~~We~va~k~~~~g~~rs~~qck~K~ 109 (345)
T KOG4282|consen 55 PRWSEEETLTLIEIRGEMDVALRRGKLK-GPLWEEVARKMAELGYPRSPKQCKAKI 109 (345)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhhc-ccHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 799999998888743 23 6679999983 34 69999999533
No 60
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=22.60 E-value=1.6e+02 Score=29.93 Aligned_cols=50 Identities=16% Similarity=0.354 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHHHHHHh----C----CChHHHHHHhCCC-----CHHHHHHHHHHHHHHhCC
Q 000305 938 SDWTDEEKSIFIQAVTSY----G----KDFSMIARCIRTR-----SRDQCKVFFSKARKCLGL 987 (1696)
Q Consensus 938 srWTdEEk~lFleaL~kY----G----KDWkaIA~~VGTK-----Tv~QcK~FY~kyRKrLnL 987 (1696)
--||+++--.+|+||..| | .||.++...|..+ |..|+..=..+-|+|+..
T Consensus 5 R~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky~~ 67 (98)
T PF04504_consen 5 RLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKYRN 67 (98)
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHH
Confidence 469999999999999998 8 4787777776543 566665444444455443
No 61
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=22.44 E-value=84 Score=35.94 Aligned_cols=50 Identities=12% Similarity=0.006 Sum_probs=46.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhC
Q 000305 937 PSDWTDEEKSIFIQAVTSYGKDFSMIARCIRTRSRDQCKVFFSKARKCLG 986 (1696)
Q Consensus 937 ssrWTdEEk~lFleaL~kYGKDWkaIA~~VGTKTv~QcK~FY~kyRKrLn 986 (1696)
..+|+.++...+.+.+.++|-++-.|++.+|.=++.|+..++...++.++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~ 182 (259)
T cd07939 133 ASRADPDFLIEFAEVAQEAGADRLRFADTVGILDPFTTYELIRRLRAATD 182 (259)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcC
Confidence 47899999999999999999999999999999999999999999998776
No 62
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=21.63 E-value=1.2e+02 Score=37.80 Aligned_cols=46 Identities=28% Similarity=0.546 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHHHHHHh-----------------CCChHHHHHHhC-----CCCHHHHHHHHHHHHHH
Q 000305 938 SDWTDEEKSIFIQAVTSY-----------------GKDFSMIARCIR-----TRSRDQCKVFFSKARKC 984 (1696)
Q Consensus 938 srWTdEEk~lFleaL~kY-----------------GKDWkaIA~~VG-----TKTv~QcK~FY~kyRKr 984 (1696)
.-|+.+=-+.|.+||+.| ||| ..||+.|+ |||..||-+|-|-+.+|
T Consensus 77 gvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRN-ELIarYIKlrtgktRTrKQVSSHIQVlarr 144 (455)
T KOG3841|consen 77 GVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRN-ELIARYIKLRTGKTRTRKQVSSHIQVLARR 144 (455)
T ss_pred cccChhHHHHHHHHHhhcCCCCceeEEEccCccccchH-HHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 689999999999999875 444 45999885 79999999999988544
No 63
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=21.60 E-value=92 Score=37.85 Aligned_cols=53 Identities=19% Similarity=0.461 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHHHHhcC-CCHHHHHhhcCCCChhHHHHHhhhcccCcChHHH
Q 000305 722 NPWTSEEREIFVDKLATFG-KDFRKIASFLNYKTTADCVEFYYKNHKSDCFEKL 774 (1696)
Q Consensus 722 n~WTEEEkeiF~EKylqhP-KnFGkIAs~Lp~KTvsDCVlfYYltKKs~nYKkL 774 (1696)
..|+..|.-+|.+..-.-+ -||.-||.+++.|+-.+|-.|||.+=-..+|.-|
T Consensus 64 e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~es~~ypl 117 (432)
T COG5114 64 EGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYDESKYYPL 117 (432)
T ss_pred CCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHhhcccccc
Confidence 4799999999999988655 7999999999999999999999876555555544
No 64
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=21.23 E-value=83 Score=40.24 Aligned_cols=46 Identities=28% Similarity=0.510 Sum_probs=41.8
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCC-HHHHHhhcCCCChhHHHHHhhhc
Q 000305 720 MINPWTSEEREIFVDKLATFGKD-FRKIASFLNYKTTADCVEFYYKN 765 (1696)
Q Consensus 720 ~in~WTEEEkeiF~EKylqhPKn-FGkIAs~Lp~KTvsDCVlfYYlt 765 (1696)
....|+-.|-++..-+-..|+|+ |.+||+.|..||..+|-.-||-|
T Consensus 6 kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ 52 (617)
T KOG0050|consen 6 KGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEW 52 (617)
T ss_pred ecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 35689999999999999999995 89999999999999999999943
No 65
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=20.65 E-value=1.1e+02 Score=29.09 Aligned_cols=41 Identities=24% Similarity=0.476 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHHHHhc--C------------CCHHHHHhhcC----CCChhHHHHHh
Q 000305 722 NPWTSEEREIFVDKLATF--G------------KDFRKIASFLN----YKTTADCVEFY 762 (1696)
Q Consensus 722 n~WTEEEkeiF~EKylqh--P------------KnFGkIAs~Lp----~KTvsDCVlfY 762 (1696)
..||++|...|++.+..+ - .-|..||..|. .||..+|-.=+
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw 60 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKW 60 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 579999999999888761 1 13677888875 78888886544
No 66
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=20.61 E-value=1.9e+02 Score=28.00 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=25.7
Q ss_pred HHHHHHHhC--------CChHHHHHHhCCCC-----HHHHHHHHHHHH
Q 000305 948 FIQAVTSYG--------KDFSMIARCIRTRS-----RDQCKVFFSKAR 982 (1696)
Q Consensus 948 FleaL~kYG--------KDWkaIA~~VGTKT-----v~QcK~FY~kyR 982 (1696)
+-.++.++| +.|..|++.+|-.+ ..++|.+|.+|-
T Consensus 41 Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~~L~~~Y~~~L 88 (92)
T PF01388_consen 41 LYKAVMKRGGFDKVTKNKKWREVARKLGFPPSSTSAAQQLRQHYEKYL 88 (92)
T ss_dssp HHHHHHHHTSHHHHHHHTTHHHHHHHTTS-TTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCcCcccCcccchHHHHHHHhCCCCCCCcHHHHHHHHHHHHh
Confidence 344555555 67999999998433 478999999984
Done!