BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000306
(1691 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 117 KQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPI 176
KQ AIE +KA EL P++ E + N Y+ +Y+E ++ ++AL ++
Sbjct: 55 KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG----DYDEAIEYYQKALELDPNN 110
Query: 177 DPAKESLQDESQQK 190
AK++L + Q++
Sbjct: 111 AEAKQNLGNAKQKQ 124
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 32.7 bits (73), Expect = 1.9, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 117 KQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPI 176
KQ AIE +KA EL P++ E + N Y+ +Y+E ++ ++AL ++
Sbjct: 21 KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG----DYDEAIEYYQKALELDPNN 76
Query: 177 DPAKESLQDESQQK 190
AK++L + Q++
Sbjct: 77 AEAKQNLGNAKQKQ 90
>pdb|3GKQ|A Chain A, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Novosphingobium Sp. Ka1
pdb|3GKQ|B Chain B, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Novosphingobium Sp. Ka1
pdb|3GKQ|C Chain C, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Novosphingobium Sp. Ka1
pdb|3GKQ|D Chain D, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Novosphingobium Sp. Ka1
pdb|3GKQ|E Chain E, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Novosphingobium Sp. Ka1
pdb|3GKQ|F Chain F, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Novosphingobium Sp. Ka1
Length = 389
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 1065 LAEQSKKSAQIFGENVAEGVCDTYLGHGSNDLDMHKSMRLSSPVQLVSKDEFPHNFEGTP 1124
+AE S Q+ GE V D + H D +H+ + LS V+ SK + G
Sbjct: 41 VAEASPVPVQLLGEKVLLNRVDGVV-HAIADRCLHRGVTLSDKVECYSKATISCWYHGWT 99
Query: 1125 VNTANGAAVPIRSSPTS 1141
NG V I ++PTS
Sbjct: 100 YRWDNGKLVDILTNPTS 116
>pdb|1EI3|A Chain A, Crystal Structure Of Native Chicken Fibrinogen
pdb|1EI3|D Chain D, Crystal Structure Of Native Chicken Fibrinogen
Length = 491
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 1197 SSEKENIGVRSDDSHLTGAAAPYLGDGGTKTLRQLHAEEDDE 1238
+S + +IG S SH+TGA + +LG GG L EE+D+
Sbjct: 364 TSSRHSIG-SSTSSHVTGAGSSHLGTGGKDKFTDLGEEEEDD 404
>pdb|1M1J|A Chain A, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
pdb|1M1J|D Chain D, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
Length = 491
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 1197 SSEKENIGVRSDDSHLTGAAAPYLGDGGTKTLRQLHAEEDDE 1238
+S + +IG S SH+TGA + +LG GG L EE+D+
Sbjct: 364 TSSRHSIG-SSTSSHVTGAGSSHLGTGGKDKFTDLGEEEEDD 404
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 32.0 bits (71), Expect = 3.3, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 117 KQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPI 176
KQ + AIE +KA EL P++ + + N Y+ +Y++ +++ ++AL ++
Sbjct: 55 KQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQG----DYQKAIEDYQKALELDPNN 110
Query: 177 DPAKESLQDESQQK 190
AK++L + Q++
Sbjct: 111 AKAKQNLGNAKQKQ 124
>pdb|1QNO|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
pdb|1QNP|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
pdb|1QNQ|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
pdb|1QNR|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
pdb|1QNS|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
Length = 344
Score = 32.0 bits (71), Expect = 3.4, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 56/151 (37%), Gaps = 7/151 (4%)
Query: 1450 FERMNCYSCGLESRHLKYTSFFHNINASALRTMKV-----MCAESSLDELLNLVEMNHQL 1504
F NCY C + H S F +I++S L+ ++V + + S ++
Sbjct: 21 FAGTNCYWCSFLTNHADVDSTFSHISSSGLKVVRVWGFNDVNTQPSPGQIWFQKLSATGS 80
Query: 1505 ACDPGAGGCEKLNYIHHILSTPPHVFTTVLGWQNTCESFDDITATLAALSPEIDISILYR 1564
+ GA G + L+Y+ + S H ++ + N + I A + A
Sbjct: 81 TINTGADGLQTLDYV--VQSAEQHNLKLIIPFVNNWSDYGGINAYVNAFGGNATTWYTNT 138
Query: 1565 GLDPKRRHSLVSVVCYYGQHYHCFAYSHDQE 1595
+ R + +VV Y FA+ E
Sbjct: 139 AAQTQYRKYVQAVVSRYANSTAIFAWELGNE 169
>pdb|2FB6|A Chain A, Structure Of Conserved Protein Of Unknown Function Bt1422
From Bacteroides Thetaiotaomicron
Length = 117
Score = 30.8 bits (68), Expect = 7.4, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 441 WKPLDIV---AAVKMLGRDKTKSRDTEVSEDFYSGNHIEECDDC 481
WK ++I+ A+VK++ D TE+ E SG IE C DC
Sbjct: 39 WKHINIILWGASVKLVANDT--QVQTEILEXLQSGITIEACQDC 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,384,070
Number of Sequences: 62578
Number of extensions: 1819973
Number of successful extensions: 4413
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 4397
Number of HSP's gapped (non-prelim): 18
length of query: 1691
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1579
effective length of database: 7,964,601
effective search space: 12576104979
effective search space used: 12576104979
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)