Query 000306
Match_columns 1691
No_of_seqs 395 out of 1519
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 03:40:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000306.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000306hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04780 DUF629: Protein of un 100.0 4E-125 9E-130 1122.2 31.2 463 333-866 2-465 (466)
2 KOG1887 Ubiquitin carboxyl-ter 100.0 1.6E-81 3.5E-86 768.6 20.1 777 535-1632 2-789 (806)
3 KOG1865 Ubiquitin carboxyl-ter 100.0 3.8E-48 8.2E-53 461.7 20.1 293 1296-1633 104-410 (545)
4 cd02663 Peptidase_C19G A subfa 100.0 1.4E-43 3E-48 417.8 26.5 281 1302-1631 1-300 (300)
5 cd02668 Peptidase_C19L A subfa 100.0 2.5E-43 5.5E-48 420.0 26.4 282 1302-1631 1-324 (324)
6 cd02657 Peptidase_C19A A subfa 100.0 5.1E-43 1.1E-47 413.4 27.2 287 1302-1631 1-305 (305)
7 cd02660 Peptidase_C19D A subfa 100.0 1E-42 2.2E-47 414.7 26.7 299 1301-1630 1-327 (328)
8 cd02661 Peptidase_C19E A subfa 100.0 2.1E-42 4.6E-47 406.2 25.7 288 1300-1630 1-303 (304)
9 cd02671 Peptidase_C19O A subfa 100.0 3.1E-42 6.7E-47 410.8 25.2 278 1295-1631 19-332 (332)
10 cd02664 Peptidase_C19H A subfa 100.0 4.5E-42 9.7E-47 409.8 25.0 268 1302-1631 1-327 (327)
11 cd02658 Peptidase_C19B A subfa 100.0 1.4E-41 3.1E-46 402.2 25.5 280 1302-1631 1-311 (311)
12 cd02667 Peptidase_C19K A subfa 100.0 6.8E-42 1.5E-46 399.6 21.6 239 1302-1631 1-279 (279)
13 cd02669 Peptidase_C19M A subfa 100.0 3.3E-41 7.2E-46 416.4 26.6 292 1298-1631 117-440 (440)
14 cd02659 peptidase_C19C A subfa 100.0 8.3E-41 1.8E-45 399.3 25.8 288 1300-1634 2-333 (334)
15 COG5560 UBP12 Ubiquitin C-term 100.0 7.9E-41 1.7E-45 396.3 11.4 313 1298-1633 263-822 (823)
16 COG5533 UBP5 Ubiquitin C-termi 100.0 1.6E-37 3.4E-42 343.9 17.1 310 1296-1633 67-414 (415)
17 cd02662 Peptidase_C19F A subfa 100.0 4.5E-36 9.8E-41 343.3 20.2 210 1302-1631 1-240 (240)
18 PF00443 UCH: Ubiquitin carbox 100.0 5.2E-35 1.1E-39 333.6 23.0 252 1300-1630 1-269 (269)
19 cd02666 Peptidase_C19J A subfa 100.0 5.1E-35 1.1E-39 348.9 17.4 284 1300-1630 1-342 (343)
20 KOG1868 Ubiquitin C-terminal h 100.0 1.7E-34 3.7E-39 360.1 11.8 319 1293-1635 294-648 (653)
21 cd02674 Peptidase_C19R A subfa 100.0 5.6E-33 1.2E-37 314.3 18.0 191 1393-1631 21-230 (230)
22 KOG0944 Ubiquitin-specific pro 100.0 1.7E-32 3.6E-37 329.3 17.2 232 1297-1563 304-547 (763)
23 cd02665 Peptidase_C19I A subfa 100.0 3.4E-31 7.3E-36 298.7 17.8 200 1393-1631 21-228 (228)
24 KOG1867 Ubiquitin-specific pro 100.0 2E-31 4.2E-36 328.3 15.9 309 1295-1633 156-484 (492)
25 COG5077 Ubiquitin carboxyl-ter 100.0 6.8E-32 1.5E-36 324.2 10.9 290 1296-1635 189-513 (1089)
26 cd02673 Peptidase_C19Q A subfa 100.0 9.5E-31 2.1E-35 299.7 19.2 208 1389-1631 28-245 (245)
27 KOG1866 Ubiquitin carboxyl-ter 100.0 8.9E-32 1.9E-36 323.7 10.2 298 1295-1638 90-439 (944)
28 cd02257 Peptidase_C19 Peptidas 100.0 3.9E-30 8.5E-35 288.9 20.9 217 1393-1631 21-255 (255)
29 COG5207 UBP14 Isopeptidase T [ 100.0 3.7E-28 8E-33 282.4 16.8 204 1300-1541 303-513 (749)
30 KOG1873 Ubiquitin-specific pro 100.0 2.3E-28 4.9E-33 296.0 11.8 138 1488-1633 677-877 (877)
31 cd02672 Peptidase_C19P A subfa 99.9 2.2E-27 4.7E-32 275.4 12.3 228 1299-1631 14-268 (268)
32 KOG1863 Ubiquitin carboxyl-ter 99.9 2.2E-26 4.7E-31 308.5 15.2 299 1294-1635 164-487 (1093)
33 KOG1870 Ubiquitin C-terminal h 99.9 2.4E-26 5.1E-31 301.4 11.3 316 1294-1633 240-841 (842)
34 PF13423 UCH_1: Ubiquitin carb 99.9 5.4E-25 1.2E-29 259.5 21.6 273 1301-1605 1-295 (295)
35 PF04781 DUF627: Protein of un 99.9 3.9E-25 8.4E-30 218.7 10.4 107 62-175 1-110 (111)
36 KOG4598 Putative ubiquitin-spe 99.9 1.6E-25 3.5E-30 266.2 6.1 270 1298-1635 85-443 (1203)
37 cd02670 Peptidase_C19N A subfa 99.9 2.9E-23 6.2E-28 236.4 14.4 122 1488-1631 79-241 (241)
38 KOG1871 Ubiquitin-specific pro 99.9 8.4E-23 1.8E-27 235.2 13.9 320 1298-1633 26-419 (420)
39 KOG1864 Ubiquitin-specific pro 99.9 1.9E-22 4.1E-27 252.5 17.0 309 1299-1632 231-571 (587)
40 KOG1872 Ubiquitin-specific pro 99.8 8.9E-21 1.9E-25 224.0 6.4 296 1296-1632 101-468 (473)
41 KOG2026 Spindle pole body prot 99.8 5.4E-19 1.2E-23 202.9 14.7 278 1299-1610 133-425 (442)
42 KOG1275 PAB-dependent poly(A) 99.6 7.3E-15 1.6E-19 182.3 14.5 310 1298-1631 497-861 (1118)
43 PF15499 Peptidase_C98: Ubiqui 98.2 2.8E-06 6.1E-11 95.6 8.4 243 1304-1606 6-254 (275)
44 KOG1887 Ubiquitin carboxyl-ter 97.4 9.3E-05 2E-09 94.6 3.5 334 825-1203 23-364 (806)
45 PRK15359 type III secretion sy 96.9 0.0094 2E-07 63.7 11.9 93 63-173 30-122 (144)
46 PLN03088 SGT1, suppressor of 96.7 0.0097 2.1E-07 73.1 11.5 98 62-178 7-104 (356)
47 PRK10803 tol-pal system protei 95.9 0.086 1.9E-06 62.2 13.7 99 58-171 143-245 (263)
48 TIGR02552 LcrH_SycD type III s 95.9 0.11 2.5E-06 53.8 12.8 95 60-172 20-114 (135)
49 PRK11189 lipoprotein NlpI; Pro 95.5 0.075 1.6E-06 63.6 11.2 100 61-179 68-167 (296)
50 TIGR02795 tol_pal_ybgF tol-pal 95.1 0.23 5E-06 49.7 11.7 97 61-172 6-105 (119)
51 COG4783 Putative Zn-dependent 94.9 0.13 2.8E-06 63.9 10.4 101 63-182 312-412 (484)
52 PRK10370 formate-dependent nit 94.8 0.23 4.9E-06 56.2 11.6 98 65-177 81-178 (198)
53 PRK12370 invasion protein regu 94.6 0.14 3.1E-06 66.6 10.7 94 69-181 316-409 (553)
54 COG3063 PilF Tfp pilus assembl 94.5 0.23 5.1E-06 56.6 10.6 106 58-181 36-144 (250)
55 PF13894 zf-C2H2_4: C2H2-type 94.5 0.025 5.5E-07 41.0 2.0 24 389-412 1-24 (24)
56 cd00189 TPR Tetratricopeptide 94.5 0.48 1E-05 43.3 11.2 92 63-172 6-97 (100)
57 KOG1864 Ubiquitin-specific pro 94.4 0.053 1.1E-06 70.2 5.9 109 1303-1415 34-155 (587)
58 PRK15179 Vi polysaccharide bio 94.2 0.2 4.3E-06 66.7 10.8 107 56-181 50-157 (694)
59 PF13432 TPR_16: Tetratricopep 94.2 0.1 2.2E-06 47.5 5.8 62 63-138 3-64 (65)
60 PRK12370 invasion protein regu 94.1 0.16 3.4E-06 66.2 9.6 99 66-182 347-445 (553)
61 PRK15179 Vi polysaccharide bio 94.0 0.38 8.3E-06 64.0 13.0 124 67-213 96-219 (694)
62 PF00096 zf-C2H2: Zinc finger, 93.6 0.045 9.8E-07 39.9 1.9 23 389-412 1-23 (23)
63 KOG2076 RNA polymerase III tra 93.1 0.62 1.3E-05 61.5 12.1 112 57-172 139-270 (895)
64 PRK15174 Vi polysaccharide exp 92.7 0.45 9.8E-06 63.3 10.7 101 65-180 220-320 (656)
65 TIGR00990 3a0801s09 mitochondr 92.7 1.2 2.6E-05 58.7 14.5 107 60-173 368-497 (615)
66 PRK15174 Vi polysaccharide exp 92.6 0.36 7.7E-06 64.3 9.5 99 64-181 49-147 (656)
67 PF09976 TPR_21: Tetratricopep 92.6 1.2 2.6E-05 47.5 11.7 92 62-168 16-110 (145)
68 TIGR02521 type_IV_pilW type IV 92.6 0.79 1.7E-05 50.5 10.8 97 58-172 32-128 (234)
69 PF13371 TPR_9: Tetratricopept 92.5 0.43 9.4E-06 44.2 7.3 69 66-148 4-72 (73)
70 PF13414 TPR_11: TPR repeat; P 91.9 0.53 1.1E-05 43.2 7.0 65 94-172 3-67 (69)
71 TIGR00990 3a0801s09 mitochondr 91.8 0.84 1.8E-05 60.3 11.5 102 64-172 338-462 (615)
72 TIGR03302 OM_YfiO outer membra 91.4 2.1 4.6E-05 48.9 12.9 102 64-172 77-195 (235)
73 PF08715 Viral_protease: Papai 91.3 0.91 2E-05 54.9 9.9 69 1310-1410 110-179 (320)
74 PF12895 Apc3: Anaphase-promot 90.9 0.97 2.1E-05 43.5 8.0 83 70-169 2-84 (84)
75 PRK09782 bacteriophage N4 rece 90.9 1.9 4.1E-05 59.9 13.6 48 122-173 660-707 (987)
76 PRK10370 formate-dependent nit 90.1 1.5 3.2E-05 49.7 9.7 95 70-180 52-146 (198)
77 COG5010 TadD Flp pilus assembl 89.8 1.4 3E-05 51.4 9.2 92 63-172 106-197 (257)
78 PRK02603 photosystem I assembl 89.0 2.8 6E-05 46.0 10.7 100 60-170 38-140 (172)
79 PF09295 ChAPs: ChAPs (Chs5p-A 88.9 1.6 3.6E-05 54.4 9.7 80 69-166 212-291 (395)
80 KOG0553 TPR repeat-containing 88.8 0.72 1.6E-05 54.6 6.2 55 114-172 90-144 (304)
81 PF13525 YfiO: Outer membrane 88.6 5.5 0.00012 45.1 13.0 84 59-142 44-127 (203)
82 PF13432 TPR_16: Tetratricopep 88.5 1.1 2.3E-05 40.7 6.0 53 121-178 13-65 (65)
83 cd05804 StaR_like StaR_like; a 88.5 7.1 0.00015 47.3 14.8 111 59-173 45-178 (355)
84 PF13414 TPR_11: TPR repeat; P 87.6 1.7 3.6E-05 39.9 6.7 63 61-136 7-69 (69)
85 PRK09782 bacteriophage N4 rece 87.6 2.3 4.9E-05 59.1 10.7 53 122-179 626-678 (987)
86 PRK10049 pgaA outer membrane p 87.5 2.6 5.7E-05 57.2 11.2 101 62-181 364-464 (765)
87 PF14559 TPR_19: Tetratricopep 87.0 1.7 3.7E-05 39.6 6.4 67 67-147 1-67 (68)
88 TIGR02521 type_IV_pilW type IV 86.2 4.7 0.0001 44.3 10.5 105 61-172 69-198 (234)
89 TIGR02917 PEP_TPR_lipo putativ 85.9 3.1 6.7E-05 55.8 10.6 88 67-172 169-256 (899)
90 PF13512 TPR_18: Tetratricopep 85.8 3.2 7E-05 44.7 8.4 84 58-141 48-135 (142)
91 PRK10747 putative protoheme IX 85.8 4 8.6E-05 51.1 10.7 85 69-172 306-390 (398)
92 PF13525 YfiO: Outer membrane 85.7 9 0.00019 43.4 12.6 70 61-141 9-78 (203)
93 TIGR03302 OM_YfiO outer membra 85.7 4.9 0.00011 45.9 10.6 109 58-178 34-149 (235)
94 CHL00033 ycf3 photosystem I as 85.4 5.6 0.00012 43.4 10.4 101 61-172 39-142 (168)
95 PRK15363 pathogenicity island 84.4 11 0.00024 41.3 11.8 93 63-173 41-133 (157)
96 PRK11788 tetratricopeptide rep 83.9 6.9 0.00015 48.0 11.6 96 62-172 146-243 (389)
97 PF12688 TPR_5: Tetratrico pep 83.9 9.9 0.00022 39.8 10.8 95 62-171 6-103 (120)
98 PF13512 TPR_18: Tetratricopep 83.7 3 6.5E-05 44.9 7.0 78 62-152 15-92 (142)
99 PRK11447 cellulose synthase su 83.6 6.3 0.00014 56.2 12.3 38 63-107 579-616 (1157)
100 PRK11447 cellulose synthase su 82.9 4.7 0.0001 57.4 10.7 96 64-178 276-385 (1157)
101 PRK11906 transcriptional regul 82.8 4.3 9.2E-05 51.1 8.9 83 72-172 319-401 (458)
102 PRK11788 tetratricopeptide rep 82.8 8.4 0.00018 47.3 11.7 42 63-107 186-227 (389)
103 TIGR00540 hemY_coli hemY prote 82.6 7.9 0.00017 48.6 11.5 105 59-182 86-191 (409)
104 PRK10866 outer membrane biogen 81.9 4.2 9E-05 47.6 8.1 71 60-141 35-105 (243)
105 PF13371 TPR_9: Tetratricopept 81.6 3.4 7.4E-05 38.2 5.9 47 122-172 12-58 (73)
106 COG4235 Cytochrome c biogenesi 81.4 7.6 0.00016 46.4 9.8 85 73-172 138-222 (287)
107 PF13429 TPR_15: Tetratricopep 80.8 4.4 9.5E-05 47.8 7.9 102 67-188 120-223 (280)
108 PF13429 TPR_15: Tetratricopep 80.2 5 0.00011 47.3 8.1 101 61-181 81-183 (280)
109 PRK10866 outer membrane biogen 80.1 20 0.00044 42.0 12.9 80 60-139 72-158 (243)
110 PRK10049 pgaA outer membrane p 80.0 7.2 0.00016 53.1 10.5 88 66-172 58-145 (765)
111 TIGR02917 PEP_TPR_lipo putativ 79.0 7.4 0.00016 52.3 10.2 96 56-169 21-116 (899)
112 PF13281 DUF4071: Domain of un 78.6 17 0.00037 45.1 12.0 87 63-155 185-275 (374)
113 PF14559 TPR_19: Tetratricopep 78.3 5 0.00011 36.5 5.8 48 121-172 7-54 (68)
114 PF12874 zf-met: Zinc-finger o 78.3 1.4 3.1E-05 32.7 1.7 23 389-411 1-23 (25)
115 cd05804 StaR_like StaR_like; a 78.2 9.9 0.00021 46.1 10.0 95 60-172 117-215 (355)
116 TIGR02552 LcrH_SycD type III s 78.1 8.6 0.00019 39.7 8.2 83 80-181 6-88 (135)
117 CHL00033 ycf3 photosystem I as 77.8 13 0.00028 40.5 9.8 76 61-139 76-154 (168)
118 PLN03088 SGT1, suppressor of 77.6 10 0.00022 47.0 9.8 79 61-153 40-118 (356)
119 PRK11189 lipoprotein NlpI; Pro 77.1 7.5 0.00016 46.7 8.4 91 71-177 40-131 (296)
120 PRK15359 type III secretion sy 76.6 11 0.00024 40.4 8.6 78 61-152 62-139 (144)
121 KOG1126 DNA-binding cell divis 76.3 5.4 0.00012 51.7 7.0 103 70-180 434-559 (638)
122 PF04959 ARS2: Arsenite-resist 76.1 1.2 2.6E-05 51.0 1.2 42 374-416 60-105 (214)
123 PHA00616 hypothetical protein 75.5 1.5 3.3E-05 37.8 1.3 25 390-414 3-27 (44)
124 KOG2053 Mitochondrial inherita 74.9 13 0.00028 49.8 10.0 110 52-183 4-113 (932)
125 COG4049 Uncharacterized protei 74.8 1.6 3.4E-05 39.0 1.3 30 387-416 16-45 (65)
126 PLN03098 LPA1 LOW PSII ACCUMUL 74.4 23 0.00049 44.9 11.5 69 56-135 74-142 (453)
127 COG1729 Uncharacterized protei 74.2 23 0.0005 42.0 10.9 86 59-155 143-231 (262)
128 KOG0553 TPR repeat-containing 73.5 14 0.0003 44.3 8.9 89 66-172 90-178 (304)
129 PRK10747 putative protoheme IX 73.4 38 0.00083 42.5 13.6 109 61-178 157-296 (398)
130 TIGR00540 hemY_coli hemY prote 72.5 25 0.00053 44.3 11.6 98 57-172 263-364 (409)
131 PRK02603 photosystem I assembl 71.7 18 0.00039 39.7 9.0 74 63-139 78-154 (172)
132 PF05605 zf-Di19: Drought indu 71.7 2.7 5.8E-05 37.7 2.0 25 390-415 4-28 (54)
133 TIGR02795 tol_pal_ybgF tol-pal 70.1 13 0.00028 37.0 6.9 68 62-140 44-111 (119)
134 PF14863 Alkyl_sulf_dimr: Alky 69.8 23 0.00049 38.3 8.9 66 59-127 72-137 (141)
135 COG4105 ComL DNA uptake lipopr 69.7 16 0.00036 42.9 8.3 77 60-139 74-150 (254)
136 PRK10153 DNA-binding transcrip 68.4 61 0.0013 42.3 14.1 91 73-173 358-450 (517)
137 PF13431 TPR_17: Tetratricopep 67.7 4.8 0.0001 32.6 2.5 33 127-163 1-33 (34)
138 smart00355 ZnF_C2H2 zinc finge 67.5 3.6 7.8E-05 29.9 1.7 24 389-413 1-24 (26)
139 PF13174 TPR_6: Tetratricopept 67.3 6.1 0.00013 30.5 3.1 27 64-90 7-33 (33)
140 PF12171 zf-C2H2_jaz: Zinc-fin 67.1 2.5 5.3E-05 32.3 0.7 22 389-410 2-23 (27)
141 PF12756 zf-C2H2_2: C2H2 type 66.3 3.9 8.5E-05 40.1 2.2 25 388-412 50-74 (100)
142 COG4105 ComL DNA uptake lipopr 65.7 17 0.00036 42.8 7.3 71 62-143 39-109 (254)
143 PF09976 TPR_21: Tetratricopep 65.1 54 0.0012 34.9 10.8 103 52-170 43-145 (145)
144 COG5010 TadD Flp pilus assembl 64.8 42 0.00091 39.6 10.3 122 64-209 73-195 (257)
145 KOG0624 dsRNA-activated protei 63.8 28 0.00061 42.3 8.7 102 52-171 33-134 (504)
146 PLN03098 LPA1 LOW PSII ACCUMUL 63.8 16 0.00035 46.2 7.2 70 86-173 70-142 (453)
147 PF13913 zf-C2HC_2: zinc-finge 63.0 4.4 9.5E-05 30.8 1.4 19 390-409 4-22 (25)
148 KOG2610 Uncharacterized conser 62.9 26 0.00057 42.4 8.3 98 64-180 110-211 (491)
149 PRK10153 DNA-binding transcrip 62.2 36 0.00079 44.4 10.3 52 122-179 437-488 (517)
150 COG4235 Cytochrome c biogenesi 61.4 57 0.0012 39.2 10.8 98 67-182 166-266 (287)
151 KOG2002 TPR-containing nuclear 61.2 23 0.00051 47.9 8.3 112 56-182 163-274 (1018)
152 PF03704 BTAD: Bacterial trans 59.9 84 0.0018 33.2 11.1 102 53-155 2-112 (146)
153 PF13912 zf-C2H2_6: C2H2-type 59.8 5 0.00011 30.4 1.2 22 390-411 3-24 (27)
154 KOG2076 RNA polymerase III tra 58.1 71 0.0015 43.3 11.8 93 52-163 411-503 (895)
155 KOG1173 Anaphase-promoting com 57.7 38 0.00083 43.6 8.9 56 122-182 363-418 (611)
156 PRK11906 transcriptional regul 57.2 90 0.0019 39.9 12.0 115 55-180 253-374 (458)
157 KOG1125 TPR repeat-containing 56.9 21 0.00045 46.0 6.5 85 70-172 443-527 (579)
158 KOG4162 Predicted calmodulin-b 56.8 58 0.0013 43.4 10.6 102 73-178 410-513 (799)
159 PRK14574 hmsH outer membrane p 56.7 75 0.0016 43.8 12.2 112 57-172 34-165 (822)
160 KOG0548 Molecular co-chaperone 56.6 57 0.0012 41.9 10.1 90 65-172 366-455 (539)
161 PHA02768 hypothetical protein; 56.0 6.3 0.00014 35.7 1.4 23 390-413 7-29 (55)
162 KOG0376 Serine-threonine phosp 55.6 6.8 0.00015 49.3 2.1 55 115-173 14-68 (476)
163 KOG4234 TPR repeat-containing 55.0 1.7E+02 0.0037 33.6 12.3 99 66-181 104-202 (271)
164 KOG0550 Molecular chaperone (D 54.8 57 0.0012 40.8 9.4 111 56-173 168-317 (486)
165 PF13428 TPR_14: Tetratricopep 54.1 23 0.00051 29.9 4.5 35 64-101 8-42 (44)
166 PLN02789 farnesyltranstransfer 54.1 73 0.0016 39.0 10.5 97 69-172 49-171 (320)
167 PLN02789 farnesyltranstransfer 53.0 72 0.0016 39.1 10.2 97 68-172 31-137 (320)
168 PF05408 Peptidase_C28: Foot-a 52.9 12 0.00025 41.7 3.1 35 1578-1614 133-169 (193)
169 KOG0547 Translocase of outer m 52.1 55 0.0012 41.7 8.8 48 122-173 445-492 (606)
170 PF13945 NST1: Salt tolerance 51.7 12 0.00026 42.2 3.0 31 329-359 102-132 (190)
171 PF06552 TOM20_plant: Plant sp 50.5 1E+02 0.0022 34.8 9.8 60 76-138 54-113 (186)
172 COG2956 Predicted N-acetylgluc 50.0 55 0.0012 39.8 8.1 86 71-171 155-242 (389)
173 PF09237 GAGA: GAGA factor; I 49.3 13 0.00028 33.2 2.1 26 389-414 25-50 (54)
174 PRK14574 hmsH outer membrane p 47.4 1.2E+02 0.0025 42.0 11.9 106 58-182 417-522 (822)
175 KOG4626 O-linked N-acetylgluco 47.1 36 0.00078 44.2 6.4 82 73-172 268-349 (966)
176 PRK14720 transcript cleavage f 47.0 1.4E+02 0.0031 41.4 12.3 115 64-189 37-162 (906)
177 PRK10803 tol-pal system protei 45.6 73 0.0016 38.0 8.5 64 65-139 188-251 (263)
178 PF05408 Peptidase_C28: Foot-a 45.5 9.1 0.0002 42.5 0.9 22 1300-1323 33-54 (193)
179 cd00189 TPR Tetratricopeptide 45.3 1.7E+02 0.0037 26.0 9.4 53 121-178 16-68 (100)
180 PF05605 zf-Di19: Drought indu 44.5 13 0.00028 33.3 1.5 42 352-412 12-53 (54)
181 COG1592 Rubrerythrin [Energy p 43.0 20 0.00043 39.7 3.0 28 370-400 119-146 (166)
182 PF13424 TPR_12: Tetratricopep 42.8 46 0.00099 31.1 5.1 71 94-172 5-75 (78)
183 KOG0547 Translocase of outer m 41.2 97 0.0021 39.6 8.6 44 125-172 380-423 (606)
184 KOG0543 FKBP-type peptidyl-pro 40.7 2.8E+02 0.006 35.0 12.3 98 65-172 216-320 (397)
185 PF06552 TOM20_plant: Plant sp 40.7 2.1E+02 0.0045 32.5 10.3 94 75-172 9-109 (186)
186 KOG4642 Chaperone-dependent E3 39.0 1.5E+02 0.0032 35.0 9.0 102 117-223 56-167 (284)
187 PHA00733 hypothetical protein 38.2 19 0.0004 38.3 1.8 25 389-413 100-124 (128)
188 KOG4626 O-linked N-acetylgluco 36.7 3E+02 0.0065 36.4 12.0 77 121-205 438-520 (966)
189 KOG4340 Uncharacterized conser 36.1 1.9E+02 0.0041 34.9 9.5 84 65-166 18-101 (459)
190 PF04733 Coatomer_E: Coatomer 35.9 1.6E+02 0.0035 35.6 9.5 99 63-178 137-235 (290)
191 PF12569 NARP1: NMDA receptor- 35.7 1.4E+02 0.0031 39.0 9.5 87 62-166 199-285 (517)
192 KOG3060 Uncharacterized conser 35.4 2.4E+02 0.0051 33.7 10.0 107 67-181 62-191 (289)
193 PF12756 zf-C2H2_2: C2H2 type 35.4 13 0.00028 36.5 0.1 26 391-416 2-27 (100)
194 smart00451 ZnF_U1 U1-like zinc 35.0 26 0.00056 28.0 1.8 23 389-411 4-26 (35)
195 KOG1174 Anaphase-promoting com 34.6 1.4E+02 0.0031 37.5 8.5 87 67-171 310-396 (564)
196 PF14561 TPR_20: Tetratricopep 34.5 2.1E+02 0.0046 28.5 8.5 46 123-172 6-51 (90)
197 KOG1840 Kinesin light chain [C 31.9 3.8E+02 0.0082 35.2 12.2 142 65-213 249-398 (508)
198 KOG1127 TPR repeat-containing 31.4 2E+02 0.0043 39.9 9.6 101 58-172 3-103 (1238)
199 PF00515 TPR_1: Tetratricopept 30.4 74 0.0016 24.9 3.7 34 94-138 1-34 (34)
200 PF12907 zf-met2: Zinc-binding 29.7 15 0.00032 31.3 -0.4 26 390-415 3-31 (40)
201 KOG4648 Uncharacterized conser 29.6 50 0.0011 40.2 3.6 61 97-172 100-160 (536)
202 PF04733 Coatomer_E: Coatomer 28.9 2.4E+02 0.0052 34.1 9.3 110 55-182 164-274 (290)
203 COG2956 Predicted N-acetylgluc 28.3 5.9E+02 0.013 31.5 11.9 98 57-172 180-278 (389)
204 PF01927 Mut7-C: Mut7-C RNAse 28.3 26 0.00056 38.0 0.9 11 388-398 124-134 (147)
205 KOG4642 Chaperone-dependent E3 28.1 74 0.0016 37.3 4.5 51 118-172 23-73 (284)
206 PF02891 zf-MIZ: MIZ/SP-RING z 27.2 18 0.00038 32.2 -0.4 12 385-396 38-49 (50)
207 PF12688 TPR_5: Tetratrico pep 26.9 3E+02 0.0065 29.0 8.4 51 57-107 38-88 (120)
208 PF09295 ChAPs: ChAPs (Chs5p-A 26.8 2.8E+02 0.006 35.2 9.6 82 70-172 182-263 (395)
209 KOG0548 Molecular co-chaperone 26.6 2.7E+02 0.0057 36.2 9.3 83 55-151 390-472 (539)
210 KOG1126 DNA-binding cell divis 26.2 2.4E+02 0.0051 37.5 8.9 96 66-183 532-627 (638)
211 KOG1173 Anaphase-promoting com 25.8 3.5E+02 0.0076 35.5 10.1 92 58-172 427-518 (611)
212 KOG4326 Mitochondrial F1F0-ATP 25.5 54 0.0012 31.1 2.3 54 895-953 10-63 (81)
213 PF02099 Josephin: Josephin; 25.4 74 0.0016 35.1 3.8 31 1574-1606 99-129 (157)
214 PF07719 TPR_2: Tetratricopept 25.2 1E+02 0.0022 23.7 3.7 33 95-138 2-34 (34)
215 KOG0550 Molecular chaperone (D 25.0 2.2E+02 0.0049 35.9 8.0 101 59-173 251-351 (486)
216 PF15297 CKAP2_C: Cytoskeleton 24.8 19 0.00042 43.9 -0.8 53 334-392 82-146 (353)
217 KOG2376 Signal recognition par 24.4 1.9E+02 0.0042 37.9 7.5 38 122-166 96-133 (652)
218 PF12895 Apc3: Anaphase-promot 24.0 1.1E+02 0.0023 29.3 4.3 41 64-108 32-72 (84)
219 PHA00732 hypothetical protein 23.9 45 0.00097 32.6 1.6 24 390-413 3-26 (79)
220 KOG1174 Anaphase-promoting com 23.8 4.8E+02 0.01 33.1 10.3 89 67-172 378-467 (564)
221 KOG1125 TPR repeat-containing 23.5 2.4E+02 0.0051 37.0 8.1 80 60-153 288-367 (579)
222 PF02892 zf-BED: BED zinc fing 23.0 53 0.0012 27.9 1.7 30 384-413 12-45 (45)
223 PF13226 DUF4034: Domain of un 22.8 2.7E+02 0.0058 33.6 8.0 67 76-145 62-139 (277)
224 COG4783 Putative Zn-dependent 22.7 6.5E+02 0.014 32.6 11.5 95 67-172 350-454 (484)
225 COG4649 Uncharacterized protei 22.6 4.8E+02 0.011 29.6 9.2 91 61-166 62-155 (221)
226 PF02259 FAT: FAT domain; Int 22.5 5.3E+02 0.012 31.0 10.9 99 56-154 183-307 (352)
227 KOG0624 dsRNA-activated protei 22.5 9E+02 0.019 30.2 12.0 94 61-172 159-252 (504)
228 PF09986 DUF2225: Uncharacteri 21.9 4.3E+02 0.0093 30.6 9.3 71 99-173 116-195 (214)
229 KOG4279 Serine/threonine prote 21.6 1E+02 0.0023 40.9 4.5 80 69-155 255-336 (1226)
230 KOG1127 TPR repeat-containing 21.3 1.6E+03 0.035 31.8 15.1 46 122-171 509-554 (1238)
231 PRK15363 pathogenicity island 20.7 2.6E+02 0.0055 31.0 6.7 83 121-212 51-133 (157)
232 PRK15331 chaperone protein Sic 20.6 9.2E+02 0.02 27.1 10.9 92 55-164 35-126 (165)
233 KOG2003 TPR repeat-containing 20.3 2.7E+02 0.006 35.1 7.4 33 55-87 417-449 (840)
No 1
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=100.00 E-value=4.3e-125 Score=1122.16 Aligned_cols=463 Identities=47% Similarity=0.751 Sum_probs=440.7
Q ss_pred HHHHHhccCCHHHHcceeEeehHHHHHHhhhccCchhHHHHHHHHHHHHhcCceeEEecccchhccCChhHHHHhhhhhh
Q 000306 333 FVRSYWNSMSLEMKRELLKVKVCDIKAHSASLKDGLASDVLAEALAFAEENKTWRFWVCCRCNEKFADSESHMHHVVQQH 412 (1691)
Q Consensus 333 ~v~~yW~~m~~e~~r~fL~V~i~~L~~~~~~~~~~~~~~~l~~al~fak~n~sW~fWiCp~C~~kF~d~~~~~~Hl~~~H 412 (1691)
+||+||++|++|+||+||+|+|++|++||.+++++.++++|++||+|||+|++|+|||||+|+++|+++++|++||+++|
T Consensus 2 ~vr~yW~sms~E~kr~FLkVsi~eL~sy~~~~~~~~a~~~Lseal~fak~n~sWrFWiCp~CskkF~d~~~~~~H~~~eH 81 (466)
T PF04780_consen 2 RVRSYWNSMSSEQKRDFLKVSIDELKSYYESVYDREAADALSEALSFAKENKSWRFWICPRCSKKFSDAESCLSHMEQEH 81 (466)
T ss_pred chhHhhccCCHHHhcCceeeEHHHHHHHHHhccchHHHHHHHHHHHHHHhcCceeEeeCCcccceeCCHHHHHHHHHHhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccccccCCCCcCHHHHhhhhcCCCccccHHHHHHHhccccccccccccccccccCCccccccccccccCCCCccc
Q 000306 413 MGNLLPKMQAVLPQSVDNEWNEMIDNCSWKPLDIVAAVKMLGRDKTKSRDTEVSEDFYSGNHIEECDDCFKDALDSSPEK 492 (1691)
Q Consensus 413 ~~~~~p~l~~~~p~~i~~~w~~~i~~~~W~P~d~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~kd~~~~~~~~ 492 (1691)
+++++|++++++||+|+++|++||.+|+|+|||++||++||+++++++++ |+ +|
T Consensus 82 ~~~l~P~lqs~lPqrId~~w~e~I~~~~WkPvD~~AA~~mik~~~k~~~~--~~---------------~~--------- 135 (466)
T PF04780_consen 82 PAGLKPKLQSVLPQRIDDDWAEMISVGSWKPVDAVAAVEMIKNRLKDVKS--FV---------------YK--------- 135 (466)
T ss_pred hhhcChhhhhhcCcccCHHHHHHHhcCCCccccHHHHHHHHHHHHhhcch--hh---------------hh---------
Confidence 99999999999999999999999999999999999999999999999984 22 23
Q ss_pred ccccCCCCCCccCCCCccccccccccccCCCccccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhcccccchhhHhHh
Q 000306 493 ENLGHSYNSSSVEGNDCEKVVSIQCRECDGNQVSAVYPLIDSWPVADDTERVKLLERIHALFELLLRHKCLSASHLSKVI 572 (1691)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Wpl~~d~er~klL~~I~~~~~~l~~~k~ls~s~~~~vi 572 (1691)
++|+.+ ||||+|+||+|||++||.+|++|++||||||+|++|||
T Consensus 136 -------------------------~gw~~~-----------WPla~DeeR~klLkkI~~ll~~l~~~k~Ls~s~~~~vi 179 (466)
T PF04780_consen 136 -------------------------NGWSKD-----------WPLADDEERAKLLKKIHSLLKSLCKHKILSCSHRDWVI 179 (466)
T ss_pred -------------------------cCCCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 233344 99999999999999999999999999999999999999
Q ss_pred hcchhhhhhcccccccc-cCccCCCcccccccChhhHHHHHHHHHHHhhhcCCCccCccccccccCCcCCCcccceeeee
Q 000306 573 QYTMDELQSLASGSLLL-NHGVGQTPMCICFLGVHQLRKIVKFLQELSHACSLGRYSERINSIDDANSVSPSLEIKETIV 651 (1691)
Q Consensus 573 ~~t~~~l~~~~s~~~l~-~~~l~~tp~~IcfL~~~~L~~il~fl~~l~~~~~~~r~~~~~~~~~~~~s~~~~~~vke~i~ 651 (1691)
+||++|||.|+++++++ +|+|++||||||||+|++|++||+||++|+ | .|+++++.+++++++|+++++|||+|+
T Consensus 180 ~ft~~~L~~l~v~~~~L~~~~l~~tP~~ICFLe~~~L~~Il~fL~~l~--~--~~~~~~~~v~~~~~~~~~~~~vkekI~ 255 (466)
T PF04780_consen 180 QFTVEELQKLEVSSQLLVNCSLDETPQCICFLECSQLNKILKFLQELK--C--RRDDGTSLVCRDVDSFWEGSRVKEKID 255 (466)
T ss_pred HhhHHHHhccCcchhhhhhccCCCCCceeEecCcHHHHHHHHHHHHHh--h--ccccCcccccccccccccccccceeee
Confidence 99999999999666655 999999999999999999999999999999 7 466777899999999999999999999
Q ss_pred ccCCcchhhhhhhhhhcccccCCcccccccccccccCCCCcCCccceeeecccCCCCCccccccchhhHhhhhhhhHHHH
Q 000306 652 LNGDASCLLLDERLLSTELISGDAFIDNVTSANIRHENGVAEDADALLTWIFAGPSSGEHLTTWMHSKEEKTHQGMEILQ 731 (1691)
Q Consensus 652 ~~~~~s~LllD~~ll~~~~~~~~~~~~i~~~~~~~~~~~~~~~~D~~~sWl~~~~s~~e~~~sw~~~~e~~~~~~~~vl~ 731 (1691)
|++|+|+||||+|+|++++.+++++|+|.++.+++||++|+++||+|+||||+|||++++|++|+++|+++++|||+|||
T Consensus 256 ld~~~S~LLLDkrll~~~~~~~dd~gti~~~~~~~~~~~~~~~gD~ilsWlf~~~s~~~~l~sw~~~~~~~~~~~~avl~ 335 (466)
T PF04780_consen 256 LDSDFSCLLLDKRLLKGELDPFDDEGTINVFDPNVHYADVQPQGDDILSWLFDGPSIDEQLPSWIRMREHNLDIWVAVLR 335 (466)
T ss_pred cCCccceeeechhhhccCCCccCcCCceeccCCCcccccCCCCCCceeEEeccCCcccccccchHHHHHHhhhHHHHHHH
Confidence 99999999999999999999999999996666999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHhhhhcccccccccchhHHHHHHHHHHHHhhccccccccccceehhh
Q 000306 732 TLEKEFYHLQSLCERKCEHLSYEEALQALEDLCLEEGKKRETVAEFGHRSYESVLRKRREELLESENDMFISSRFESDAI 811 (1691)
Q Consensus 732 ~~~~~~~~l~~~~~kk~~~l~~e~~l~~ve~~c~~E~~~r~~~~~~~~~~y~~~l~~r~eel~~~~~~~~~~~~~~~~~i 811 (1691)
+|+++|++|+++|+|||+||+||+|||+||+||++|++||+++++|+|++|||+||+|||||+++++|+++++++|+|+|
T Consensus 336 ~v~~~~~~L~~~y~kK~~~l~ye~aL~~ve~lc~~E~~rR~~~~e~~~~~y~slL~~~~eel~~~~~d~~~~~k~~l~~v 415 (466)
T PF04780_consen 336 AVEKEFRTLQSKYEKKCEHLSYEEALQAVENLCLEEDKRRENLPEDQWQSYASLLRKRCEELVENDDDNSLSTKFELDAV 415 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHhcccccccccchhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhhccCCCCccccccCCccccccccCCCCCCccccccccccchHHHHH
Q 000306 812 LNVLKEAEALNVNQFGYEDTYSGMTSQLCDLESGEDDDWRNKDCLHQVDTCIEVA 866 (1691)
Q Consensus 812 ~~vl~~~~~~~~~~f~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~d~~v~~~ 866 (1691)
+|||++|++ |+|+|.+..+| +++|+|+++++.|| +++++.|+.|+||+.+
T Consensus 416 ~~Vl~~a~~---~~f~~~~~~~~-~~~i~~~~s~~~dd-~~~~~~~~l~s~v~~~ 465 (466)
T PF04780_consen 416 RDVLKEAST---PTFNFFGYEDC-TSLIRDLKSGESDD-RVKKSIHLLDSVVQFK 465 (466)
T ss_pred HHHHhhccc---CCCCCcccHHH-HHHHhcccccccch-HHHHHHHHHHHHHhhc
Confidence 999999999 77777776666 66799999999999 9999999999998743
No 2
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-81 Score=768.62 Aligned_cols=777 Identities=26% Similarity=0.372 Sum_probs=649.6
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhcccccchhhHhHhhcchhhhhhcc-cccccccCccCCCcccccccChhhHHHHHH
Q 000306 535 WPVADDTERVKLLERIHALFELLLRHKCLSASHLSKVIQYTMDELQSLA-SGSLLLNHGVGQTPMCICFLGVHQLRKIVK 613 (1691)
Q Consensus 535 Wpl~~d~er~klL~~I~~~~~~l~~~k~ls~s~~~~vi~~t~~~l~~~~-s~~~l~~~~l~~tp~~IcfL~~~~L~~il~ 613 (1691)
||++.|++|+++|++|+.+++.++.+||++|++++|+|.|++.||..+. |.+.+ .+++++|||+||||++..|.+|++
T Consensus 2 ~~~~~~~~~~~llk~i~l~l~~~~~~k~~s~sir~~~m~~p~~~l~~~~~Seh~~-~~~~v~t~qs~~~le~~~l~~i~~ 80 (806)
T KOG1887|consen 2 WPLAEDEERSKLAKEIKLLLVSFCDRKILSCSIRDWLMGFPVKHLGQLEVSEHSL-DSRLVETPQSICFLENPELYQVLD 80 (806)
T ss_pred CchhhhhhHHHHHHHHHHHHhhhhhhhhccCcccchhhcCCHHHhccceeccccc-chhhhcccchhhhhccHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999886 88888 999999999999999999999999
Q ss_pred HHHHHhhhcCCCccCccccccccCCcCCCcccceeeeeccCCcchhhhhhhhhhcccccCCccccccccc-ccccCCCCc
Q 000306 614 FLQELSHACSLGRYSERINSIDDANSVSPSLEIKETIVLNGDASCLLLDERLLSTELISGDAFIDNVTSA-NIRHENGVA 692 (1691)
Q Consensus 614 fl~~l~~~~~~~r~~~~~~~~~~~~s~~~~~~vke~i~~~~~~s~LllD~~ll~~~~~~~~~~~~i~~~~-~~~~~~~~~ 692 (1691)
|+..++ | .|++++++++.++++++..++++++|++|..+++|++|++++.++...++++|+| +|+ |++||.+..
T Consensus 81 ~~~~~~--~--~~~~g~~l~~~~~~~~~~~~~~~~k~d~d~~~~~~~~~~rl~~~~~~~~~~~g~~-n~~~p~~~~~~~~ 155 (806)
T KOG1887|consen 81 FLKKIK--C--QRNDGTGLVCRAVYSFFSRTRVKSKIDFDAQFSVLLLDKRLLKSKGNRFDDEGTI-NVFDPEAHYAKTK 155 (806)
T ss_pred HHHhhc--c--ccccCCccccccccceeeeeecccccCCchhhhhhhhcchhhhccCccccCCCcc-cccCchHhhhhhh
Confidence 999998 8 7999999999999999999999999999999999999999999999999998888 777 999999999
Q ss_pred CCccceeeecccCCCCCccccccchhhHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHhhhhccc
Q 000306 693 EDADALLTWIFAGPSSGEHLTTWMHSKEEKTHQGMEILQTLEKEFYHLQSLCERKCEHLSYEEALQALEDLCLEEGKKRE 772 (1691)
Q Consensus 693 ~~~D~~~sWl~~~~s~~e~~~sw~~~~e~~~~~~~~vl~~~~~~~~~l~~~~~kk~~~l~~e~~l~~ve~~c~~E~~~r~ 772 (1691)
.++|.+++|+.++.+.+..| ++.+|++++++||++++++++||+.+.+.|++|+.++.|.+|++.++++|++||.||+
T Consensus 156 ~~~d~iiswl~~~v~~d~~f--p~~~~~~nl~~~~~~~rav~~tc~~~~t~~~~~~~~~~~~~~~~~~~~k~~~ed~r~~ 233 (806)
T KOG1887|consen 156 SQLDDIISWLEDYVLENKIF--PRPIREHNLDIWMAVLRAKQFTCRTLATKYAKKILVLKYDAALTDPENKCMREDERRK 233 (806)
T ss_pred hhcchhhhhhhhhhhccccC--CchhhhccchhHHHHHHHHHHHHHHHhhHHHHHHHhhchhhhhcchhhhhcchhhhhh
Confidence 99999999999988888886 9999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhHHHHHHHHHHHHhhccccccccccceehhhhhHHHHHhhhccCCCCccccccCCccccccccCCCCCCccc
Q 000306 773 TVAEFGHRSYESVLRKRREELLESENDMFISSRFESDAILNVLKEAEALNVNQFGYEDTYSGMTSQLCDLESGEDDDWRN 852 (1691)
Q Consensus 773 ~~~~~~~~~y~~~l~~r~eel~~~~~~~~~~~~~~~~~i~~vl~~~~~~~~~~f~~~~~~~~~~~~~~d~~~~~~~~~~~ 852 (1691)
+.+++||..||+++++.|+|-+-.+. +..+.++++|.+||..+.. |+|.+.+..+|++. +
T Consensus 234 n~~~dq~~~y~~~~~~~~qe~~~~~~---~~~~~~~~~v~d~~~~~s~---p~~~~~~~~~c~N~--------------~ 293 (806)
T KOG1887|consen 234 NKPEDQWLEYEQLLLDSCQEQQIEQS---LQTKLFLCAVRDVLEGASS---PTFAFADASDCLNL--------------I 293 (806)
T ss_pred cchHHHHHHHHHhchHHHHHHHHHhh---hhhhhHHHHHHhhhccccC---CCCCccchHhhcch--------------h
Confidence 99999999999999999999763333 8899999999999999999 99999999999999 7
Q ss_pred cccccccchHHHHHHHHHHHhHHhhhhhhhhhhhhhhhhHHHHhhhcCcccccccchhhhHhHHHHHHHHHHHHHhhhhh
Q 000306 853 KDCLHQVDTCIEVAIQRQKEQLSVELSKIDARIMRNVTSMQQLELKLEPVSAYDYQSILLPLVQSYLRAHLEDLAEKDAT 932 (1691)
Q Consensus 853 ~~~~~~~d~~v~~~i~~~k~~~~~~~~~id~~il~~~~~~~~l~~~l~~~s~~dyr~~ilpl~k~~l~~~L~~~~~~da~ 932 (1691)
+.|++.+|+.|..+|..+|+.++.++..+|++|+.+..+++.|.+.|.++++||||++++.++|.|+ ++++.+|..+
T Consensus 294 ~~~~~~~~~~~~~~i~~l~s~s~~~v~~~~s~il~~~~sr~~l~~~~~r~~~~~~~s~~~~~~~~~~---~~e~k~~~~k 370 (806)
T KOG1887|consen 294 REHKQEKDDAVLPSIDLLKSVSTQKVLLKDSKILLISESRISLLNSLSRTSTFDNRSYDLRLKKPFL---LDEIKNMEKK 370 (806)
T ss_pred hhccccccceecCCcchhhhhhhheeccchhhhhccchhhhhhhhcccccccccchhhhhhhcchhh---hhhhhhcchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 7888889999
Q ss_pred hhhHHHHHHHHHHHhhhhhhhccCCCCCCcccccchhhhhhhhhhhcccCCCCCCCCCcceecccccCcccccccCCCCC
Q 000306 933 EKSDAAREAFLAELALDSKKVARGGSDISKHTNDKTKEKRKHKEYRKTKDSKPVGGNERHIVHDKTADLVSFPVESDGDN 1012 (1691)
Q Consensus 933 ~~~~a~~~a~~a~l~~~~~k~~~~~~~~~~~~~~k~~~kk~~k~~r~~kd~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1012 (1691)
+|++++ .|+|+-+.+|.+.. +..+|||+ .+-.|.++
T Consensus 371 ~k~~~~----~~~l~~e~ek~~~~----------~~~~~~k~-----~~~~~~~s------------------------- 406 (806)
T KOG1887|consen 371 AKKDLA----EADLLSELEKEKPS----------KHQSKKKK-----QGSNKRTS------------------------- 406 (806)
T ss_pred hhhhhh----hhhhhhHHHHhhhc----------cccccccc-----cccccCcc-------------------------
Confidence 988855 77888666665422 22222222 12233332
Q ss_pred CCCCcccccCCcchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHhhHHHhhhccccccCCccccccccCcCCCC
Q 000306 1013 PDSETVVSANGDDLKLQEEEFRRKIELEAEERKLEETLAYQRRIENEAKLKHLAEQSKKSAQIFGENVAEGVCDTYLGHG 1092 (1691)
Q Consensus 1013 ~~~~~~~s~~~~~~~~~ee~~~~~~~~~~ee~k~~~~~~~q~~~~~~~k~k~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 1092 (1691)
.+++.+.++..|. +.+
T Consensus 407 ------~~~ss~l~~~~~~---------------------------------------~~~------------------- 422 (806)
T KOG1887|consen 407 ------TSKSSLLDKTVEH---------------------------------------KHS------------------- 422 (806)
T ss_pred ------cccCCcccccccc---------------------------------------ccc-------------------
Confidence 2333333332111 211
Q ss_pred CCCcccccccccCCcccccccCCCCCCCCCCCcccCCCccccCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCc
Q 000306 1093 SNDLDMHKSMRLSSPVQLVSKDEFPHNFEGTPVNTANGAAVPIRSSPTSSFQNINTAHHLSIKQGLPNGETPEDGFLPTD 1172 (1691)
Q Consensus 1093 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 1172 (1691)
..+++.++ +..++++.++.|.+++
T Consensus 423 ---------------~~l~~~~s-----------------------------------------~~s~~~~~e~s~~~~~ 446 (806)
T KOG1887|consen 423 ---------------HGLEPYSS-----------------------------------------SPSLGKSEEGSMEPED 446 (806)
T ss_pred ---------------cccCCCCC-----------------------------------------ccccccccCCcccccc
Confidence 11222222 3347888999999999
Q ss_pred cccCCccccccCCCccccccccccCcccccccccCCCCCCCCccCCCCCCCCcccccccccchhhHHHHHHHHHHHHHhh
Q 000306 1173 RRTGRRGRRHRSSNRSQDWKNQALSSEKENIGVRSDDSHLTGAAAPYLGDGGTKTLRQLHAEEDDEERFQADLKQAVRQS 1252 (1691)
Q Consensus 1173 ~~~~~~~~~~~~s~~~~~~k~~~~s~~~~n~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~s 1252 (1691)
...++.|+.++++ ++.|++ ++++..
T Consensus 447 ~~~~e~g~le~s~-------------~~~~q~------------------e~~k~~------------------------ 471 (806)
T KOG1887|consen 447 GLSNENGNLEISS-------------NTRNQE------------------EATKDP------------------------ 471 (806)
T ss_pred cccCCCcchhhcc-------------cccchh------------------hcccCc------------------------
Confidence 9999999999988 666663 223221
Q ss_pred hhhhhhcccCcccccccccccccccccccccccccccccCCCCcccccccccCCCCCCcccchHHHHH----HHhhHHHH
Q 000306 1253 LDTFQAHQKMPLVSSLRMTQNVSLEANKVAVLSNEVRSENVNGIDVYGAGLKNEVGEYNCFLNVIIQS----LWHLRRFR 1328 (1691)
Q Consensus 1253 ~~~~~~~~~~p~~~s~~~~~~~~l~~~~~~~sS~~~~~~s~~gs~~~~~GL~NlG~~NTCYmNSVLQ~----L~hip~FR 1328 (1691)
.+.+||+.+++ +.+. ++..+ | -.|-.|+.+++ |+++..|.
T Consensus 472 -----~~~~~p~e~~~----------------s~~~--e~~~~-----------~--~~~~~~saldm~lk~~~n~~i~~ 515 (806)
T KOG1887|consen 472 -----DMKNMPPEDSR----------------SSHT--ESAIG-----------G--AAARYNSALDMTLKALLNIKVLK 515 (806)
T ss_pred -----ccccCCCcccc----------------cccc--ccccc-----------c--ccceehhHHHHHHHHhhhhhhhh
Confidence 35778887765 2111 11110 1 25555666665 44555555
Q ss_pred HHHhccCCCCCCccCCcHHHHHHHHHHHHHhhcCCCCCCcccCcHHHHHHHhhhCCCCccchhhccccHHHHHHHHHHHH
Q 000306 1329 EEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCL 1408 (1691)
Q Consensus 1329 ~~ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~VsP~~L~~aL~~~~p~~~~F~~g~QQDA~EFL~~LLD~L 1408 (1691)
+.++....+... -++.++|+.+| |.+..+......++.++|..+|..|
T Consensus 516 e~l~~~~q~~~~----~~vp~al~~~~----------------------------~~s~~~~~~~~~~~S~lL~~ll~~l 563 (806)
T KOG1887|consen 516 EDLLKNRQPLVA----LQVPIALQNFF----------------------------PASVSESIKHEGVYSELLSDLLLSL 563 (806)
T ss_pred cccccccchhcc----ccCcchhhhcC----------------------------CcchHHHHHhhhhHHHHHHHHHhhh
Confidence 444443322111 12334444443 3333344445566777888888888
Q ss_pred HhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEeccCCCcccccccccceeeecchhhhhhhHhhccc
Q 000306 1409 HRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGLESRHLKYTSFFHNINASALRTMKVMCAE 1488 (1691)
Q Consensus 1409 heel~~~~~~s~~es~es~~~~s~~~~~~~SiI~~LF~G~l~s~i~C~~Cg~~S~~~~~~sf~~lI~~~~l~~~k~~~~~ 1488 (1691)
+........+.+......+....|++....++++++|+.....++.|.+|+..++++++++|++++.+.+++.++.+.++
T Consensus 564 ~~~~~~ss~~~~v~~aile~~~~Wk~~er~~l~~~lf~l~~~e~~Sc~~cr~~~n~peqsS~~~~~~a~slr~~k~a~~n 643 (806)
T KOG1887|consen 564 EEVHNASSSAADVVVAILEFWQCWKNPERESLVNRLFTLEEKERMSCSKCRRDLNYPEQSSYGIVIAADSLRQLKCAFQN 643 (806)
T ss_pred HHHhhhcchhhHHHHHHHhcccccccHHHHHHHHhhhhhhhhhhccccccccCCCCcchhhhhhhccchhhhhHHHHhhh
Confidence 77765543333322333333455888888999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhcccccccCCCCCCCCccceEEEEccCCCCeEEEEEEeecCCCcccccccccccccceeccccccc-cCC
Q 000306 1489 SSLDELLNLVEMNHQLACDPGAGGCEKLNYIHHILSTPPHVFTTVLGWQNTCESFDDITATLAALSPEIDISILYR-GLD 1567 (1691)
Q Consensus 1489 ~SL~dlLk~~~~ee~~~Cd~~c~~C~kk~~kq~~I~rlP~VLiIhLkr~s~~~~~~KI~~~v~sfP~~LDLs~f~~-g~~ 1567 (1691)
.+|++.|+...++..+.||...++||+.+.+++.|.++|+|++|.|.|... ++...|..+..++.+++|++..|+ |++
T Consensus 644 ~~f~~ilk~i~m~~~m~cD~~~gGCgk~n~v~h~is~~P~vftIvlewEk~-ETe~eI~~T~~aL~teidis~~y~~g~e 722 (806)
T KOG1887|consen 644 ITFEDILKNIRMNDKMLCDKETGGCGKANLVHHILSPCPPVFTIVLEWEKS-ETEKEISETTKALATEIDISRLYREGLE 722 (806)
T ss_pred hhHHHHHHHhhhhhhhcccccCCCCcchhhhhhhcCCCCCeeEeeeehhcc-cchHHHHHHHHHHHhhhhHHHHhhhccC
Confidence 999999999999999999999999999999999999999999999988765 777889999999999999999995 899
Q ss_pred CCCcEEEEEEEEEe--CCeEEEEEEeCCCCcEE--EEeCCcceEeCChHHHHhhhhcCCcccEEEEecc
Q 000306 1568 PKRRHSLVSVVCYY--GQHYHCFAYSHDQERWI--MYDDKTVKVVGSWSDVLSMCERGHLQPQEVVQDY 1632 (1691)
Q Consensus 1568 ~~~~Y~L~AVVvH~--GGHY~AyVR~~~~~~W~--~FNDs~Vt~Vsewe~Vls~~~~~~~qPYILFYe~ 1632 (1691)
+.++|+|++||..+ |++|+|+++ ..++|+ ..+|..+..|++|.+|++.|+.++.+|.||||+.
T Consensus 723 p~t~yrLVSmv~~~e~~~~~~C~Ay--e~Nrwvs~r~~~~~~e~iG~w~dvvr~c~e~~vrpeil~ye~ 789 (806)
T KOG1887|consen 723 PNTKYRLVSMVGNHEEGEEYICFAY--EPNRWVSLRHEDSQGEVVGDWKDVVRFCGERKVRPEILFYEA 789 (806)
T ss_pred cCceeEEEEEeeeccccceEEEeec--cCCcchhhHHHHHHhhhccchHHHHHHHhcccccHHHHHHHH
Confidence 99999999999988 699999999 678888 9999999999999999999999999999999985
No 3
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-48 Score=461.65 Aligned_cols=293 Identities=22% Similarity=0.357 Sum_probs=244.1
Q ss_pred cccccccccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCccCCcHHHHHHHHHHHHHhhcCCCCCCcccCcHHH
Q 000306 1296 IDVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSL 1375 (1691)
Q Consensus 1296 s~~~~~GL~NlG~~NTCYmNSVLQ~L~hip~FR~~ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~VsP~~L 1375 (1691)
....++||.|+| ||||+|||||||.++|||..||+...+....+....|++|+|+.++.....+ ...+++|..|
T Consensus 104 ~~~~~~GL~NlG--NtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~~A~~~----~g~pisP~~i 177 (545)
T KOG1865|consen 104 PAAVGAGLQNLG--NTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHITRALHN----PGHPISPSQI 177 (545)
T ss_pred cccCCcceecCC--ccHHHHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHHHHhcC----CCCccChHHH
Confidence 345678999999 8999999999999999999999998876666667889999999988765533 3459999999
Q ss_pred HHHHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEec
Q 000306 1376 RIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNC 1455 (1691)
Q Consensus 1376 ~~aL~~~~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~~s~~~~~~~SiI~~LF~G~l~s~i~C 1455 (1691)
+..|..+... |..|.|+||||||++++|.|+..+.......+ ......++|+++|||.++++++|
T Consensus 178 ~s~L~~I~~~---f~~grQEDAHEFLr~~vd~mqk~cL~g~~~~~------------~~sq~ttlv~~iFGG~LrS~vkC 242 (545)
T KOG1865|consen 178 LSNLRNISAH---FGRGRQEDAHEFLRFTVDAMQKACLPGHKQVD------------PRSQDTTLVHQIFGGYLRSQIKC 242 (545)
T ss_pred HHhhhhhccc---ccCCchhhHHHHHHHHHHHHHHhhcCCCccCC------------cccccceehhhhhccchhhceec
Confidence 9999998776 99999999999999999999998763322111 01123789999999999999999
Q ss_pred cCCCcccccccccceeeecchhhhhhhHhhcccCCHHHHHHHHh------cccccccCCCCCCCCccc--eEEEEccCCC
Q 000306 1456 YSCGLESRHLKYTSFFHNINASALRTMKVMCAESSLDELLNLVE------MNHQLACDPGAGGCEKLN--YIHHILSTPP 1527 (1691)
Q Consensus 1456 ~~Cg~~S~~~~~~sf~~lI~~~~l~~~k~~~~~~SL~dlLk~~~------~ee~~~Cd~~c~~C~kk~--~kq~~I~rlP 1527 (1691)
..|.++|.+ |+.++.+ .+. .....+|+++|+.|. ++++|.|+ .|+++. .|+.+|.++|
T Consensus 243 ~~C~~vS~t--yE~~~dl-tve-------i~d~~sl~~AL~qFt~~E~L~gen~Y~C~----~Ck~~v~A~K~lti~raP 308 (545)
T KOG1865|consen 243 LHCKGVSDT--YEPYLDL-TLE-------IQDASSLQQALEQFTKPEKLDGENAYHCG----RCKQKVPASKQLTIHRAP 308 (545)
T ss_pred ccCCCcccc--cccccce-EEE-------eccchhHHHHHHHhhhHHhhCCccccccc----hhhhhCcccceeeeecCC
Confidence 999999998 6666654 111 012268899998876 56788886 599884 4689999999
Q ss_pred CeEEEEEEeecCCCcccccccccccccceeccccccccC-CCCCcEEEEEEEEEeC-----CeEEEEEEeCCCCcEEEEe
Q 000306 1528 HVFTTVLGWQNTCESFDDITATLAALSPEIDISILYRGL-DPKRRHSLVSVVCYYG-----QHYHCFAYSHDQERWIMYD 1601 (1691)
Q Consensus 1528 ~VLiIhLkr~s~~~~~~KI~~~v~sfP~~LDLs~f~~g~-~~~~~Y~L~AVVvH~G-----GHY~AyVR~~~~~~W~~FN 1601 (1691)
+||+|||+||.. .+..||.+.|. ||+.|||.||+.+. +....|.|||||+|.| |||+||||+. .|.||.||
T Consensus 309 nVLTi~LKRF~~-~~~gKI~K~I~-fPE~LDl~PyMS~~~e~s~~Y~LYavlVH~g~~~~~GHY~cYvks~-~g~Wy~~D 385 (545)
T KOG1865|consen 309 NVLTLHLKRFSN-GTGGKISKPVS-FPETLDLQPYMSQPNEGSTVYKLYAVLVHLGTSCHSGHYFCYVKSQ-NGQWYKMD 385 (545)
T ss_pred ceEEEeeehhcc-CcccccccccC-CcccccccccccCCCCCCceEEEEEEEEeccccccCCceEEEEEcC-CCceEEcc
Confidence 999999999988 67789999987 99999999999843 3567999999999999 9999999974 57999999
Q ss_pred CCcceEeCChHHHHhhhhcCCcccEEEEeccC
Q 000306 1602 DKTVKVVGSWSDVLSMCERGHLQPQEVVQDYD 1633 (1691)
Q Consensus 1602 Ds~Vt~Vsewe~Vls~~~~~~~qPYILFYe~~ 1633 (1691)
|+.|+.++. +.|++ .++|||||.|.
T Consensus 386 DS~V~~~~~-~~VLs------q~AYmLfY~R~ 410 (545)
T KOG1865|consen 386 DSEVTQSSI-ESVLS------QQAYILFYARK 410 (545)
T ss_pred Cceeeeccc-cceec------ccceEEEEEee
Confidence 999999865 66775 68999999986
No 4
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.4e-43 Score=417.83 Aligned_cols=281 Identities=18% Similarity=0.304 Sum_probs=218.3
Q ss_pred cccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCccCCcHHHHHHHHHHHHHhhcCCCCCCcccCcHHHHHHHhh
Q 000306 1302 GLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRIALSN 1381 (1691)
Q Consensus 1302 GL~NlG~~NTCYmNSVLQ~L~hip~FR~~ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~VsP~~L~~aL~~ 1381 (1691)
||.|+| ||||||||||||+| .+++++|+.||..|+.... ....++|..|+.+|+.
T Consensus 1 Gl~NlG--nTCY~NsvLQ~L~~---------------------~~l~~~L~~lf~~l~~~~~--~~~~isP~~f~~~l~~ 55 (300)
T cd02663 1 GLENFG--NTCYCNSVLQALYF---------------------ENLLTCLKDLFESISEQKK--RTGVISPKKFITRLKR 55 (300)
T ss_pred CccCCC--cceehhHHHHHhhh---------------------HHHHHHHHHHHHHHHhCCC--CCeeECHHHHHHHHHh
Confidence 899999 79999999999998 3789999999999986422 4568999999999998
Q ss_pred hCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEeccCCCcc
Q 000306 1382 LYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGLE 1461 (1691)
Q Consensus 1382 ~~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~~s~~~~~~~SiI~~LF~G~l~s~i~C~~Cg~~ 1461 (1691)
..+. |..++||||||||.+|||.||+++.........+ .............++|.++|+|++.++++|..|+..
T Consensus 56 ~~~~---f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~~C~~~ 129 (300)
T cd02663 56 ENEL---FDNYMHQDAHEFLNFLLNEIAEILDAERKAEKAN---RKLNNNNNAEPQPTWVHEIFQGILTNETRCLTCETV 129 (300)
T ss_pred hcCC---CCCCccccHHHHHHHHHHHHHHHHHHHhhccccc---ccccccccCCcCCCChhhhCceEEEeeEEeCCCCCC
Confidence 7766 9999999999999999999999986542211100 000000112224678999999999999999999998
Q ss_pred cccccccceeeecchhhhhhhHhhcccCCHHHHHHHHhccc------ccccCCCCCCCCccc--eEEEEccCCCCeEEEE
Q 000306 1462 SRHLKYTSFFHNINASALRTMKVMCAESSLDELLNLVEMNH------QLACDPGAGGCEKLN--YIHHILSTPPHVFTTV 1533 (1691)
Q Consensus 1462 S~~~~~~sf~~lI~~~~l~~~k~~~~~~SL~dlLk~~~~ee------~~~Cd~~c~~C~kk~--~kq~~I~rlP~VLiIh 1533 (1691)
+.+ +++|+.+ +... ....+|++||+.|+..+ .|.|+ .|+++. .++..|.++|+||+||
T Consensus 130 s~~--~e~f~~L-sl~i-------~~~~sl~~~L~~~~~~E~l~~~~~~~C~----~C~~~~~a~k~~~i~~lP~vLii~ 195 (300)
T cd02663 130 SSR--DETFLDL-SIDV-------EQNTSITSCLRQFSATETLCGRNKFYCD----ECCSLQEAEKRMKIKKLPKILALH 195 (300)
T ss_pred ccc--cceeEEe-ccCC-------CCcCCHHHHHHHhhcccccCCCCcEECC----CCCCceeEEEEEEeccCCceeEEE
Confidence 876 4566543 2211 12468999999987544 46676 587764 5688899999999999
Q ss_pred EEeecCCCc---ccccccccccccceeccccccc-cCCCCCcEEEEEEEEEeC-----CeEEEEEEeCCCCcEEEEeCCc
Q 000306 1534 LGWQNTCES---FDDITATLAALSPEIDISILYR-GLDPKRRHSLVSVVCYYG-----QHYHCFAYSHDQERWIMYDDKT 1604 (1691)
Q Consensus 1534 Lkr~s~~~~---~~KI~~~v~sfP~~LDLs~f~~-g~~~~~~Y~L~AVVvH~G-----GHY~AyVR~~~~~~W~~FNDs~ 1604 (1691)
|+||..... ..|+...+. ||..|||..+.. ...+...|+|+|||+|.| |||+||+|. +++||+|||+.
T Consensus 196 LkRF~~~~~~~~~~Ki~~~v~-fp~~L~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~~k~--~~~W~~fdD~~ 272 (300)
T cd02663 196 LKRFKYDEQLNRYIKLFYRVV-FPLELRLFNTTDDAENPDRLYELVAVVVHIGGGPNHGHYVSIVKS--HGGWLLFDDET 272 (300)
T ss_pred EEeEEeecccCCceecCceEe-cCcEEeccccccccCCCCeEEEEEEEEEEecCCCCCCceEEEEEC--CCcEEEEcCCc
Confidence 999876432 467777765 999999987643 233457999999999999 999999994 89999999999
Q ss_pred ceEeCChHHHHhhhhc--CCcccEEEEec
Q 000306 1605 VKVVGSWSDVLSMCER--GHLQPQEVVQD 1631 (1691)
Q Consensus 1605 Vt~Vsewe~Vls~~~~--~~~qPYILFYe 1631 (1691)
|+.|+ +++|...++. ...+||||||+
T Consensus 273 V~~~~-~~~v~~~~~~~~~~~~aYiLfY~ 300 (300)
T cd02663 273 VEKID-ENAVEEFFGDSPNQATAYVLFYQ 300 (300)
T ss_pred eEEcC-HHHHHHhcCCCCCCCceEEEEeC
Confidence 99985 5778776543 35789999996
No 5
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.5e-43 Score=419.96 Aligned_cols=282 Identities=19% Similarity=0.279 Sum_probs=221.8
Q ss_pred cccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCc---------cCCcHHHHHHHHHHHHHhhcCCCCCCcccCc
Q 000306 1302 GLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIH---------VGEPCVVCALYEIFTALSIASTDTRKEAVAP 1372 (1691)
Q Consensus 1302 GL~NlG~~NTCYmNSVLQ~L~hip~FR~~ll~~~~~~~~~---------~~~~cv~~aL~~LF~~L~~ss~~~~~~~VsP 1372 (1691)
||.|+| |||||||+||+|+|+|+||++++......... ....+++++|+.||..|+.+ ....++|
T Consensus 1 GL~NlG--nTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~----~~~~i~p 74 (324)
T cd02668 1 GLKNLG--ATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFG----NRSVVDP 74 (324)
T ss_pred CcccCC--ceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhC----CCceECh
Confidence 899999 79999999999999999999999865332100 12358999999999999865 4568999
Q ss_pred HHHHHHHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEE
Q 000306 1373 TSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFER 1452 (1691)
Q Consensus 1373 ~~L~~aL~~~~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~~s~~~~~~~SiI~~LF~G~l~s~ 1452 (1691)
..|..++. |..++||||+|||.+|||.||+++..... ....++|+++|+|.+.++
T Consensus 75 ~~f~~~l~--------~~~~~QqDa~EFl~~lLd~L~~~l~~~~~-----------------~~~~~~i~~~F~G~~~~~ 129 (324)
T cd02668 75 SGFVKALG--------LDTGQQQDAQEFSKLFLSLLEAKLSKSKN-----------------PDLKNIVQDLFRGEYSYV 129 (324)
T ss_pred HHHHHHhC--------CCCccccCHHHHHHHHHHHHHHHHhhccC-----------------CcccchhhhhcceEEEEE
Confidence 99988874 55779999999999999999998754211 012578999999999999
Q ss_pred EeccCCCcccccccccceeee-cchhhhhhhHhhcccCCHHHHHHHHhccc------ccccCCCCCCCCccc--eEEEEc
Q 000306 1453 MNCYSCGLESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMNH------QLACDPGAGGCEKLN--YIHHIL 1523 (1691)
Q Consensus 1453 i~C~~Cg~~S~~~~~~sf~~l-I~~~~l~~~k~~~~~~SL~dlLk~~~~ee------~~~Cd~~c~~C~kk~--~kq~~I 1523 (1691)
++|..|+..+.. ++.|+.+ ++.. +..+|+++|+.|+..+ .|.|+ .|+++. .++..|
T Consensus 130 ~~C~~C~~~s~~--~e~f~~l~l~i~---------~~~sl~~~L~~~~~~e~l~g~~~~~C~----~C~~~~~a~k~~~i 194 (324)
T cd02668 130 TQCSKCGRESSL--PSKFYELELQLK---------GHKTLEECIDEFLKEEQLTGDNQYFCE----SCNSKTDATRRIRL 194 (324)
T ss_pred EEeCCCCCcccc--ccccEEEEEEec---------ccCCHHHHHHHhhCceecCCCccccCC----CCCceeeeEEEEEe
Confidence 999999998866 4555543 2221 2368999999887544 46665 688774 457889
Q ss_pred cCCCCeEEEEEEeecCC---CcccccccccccccceeccccccccC-CCCCcEEEEEEEEEeC-----CeEEEEEEeCCC
Q 000306 1524 STPPHVFTTVLGWQNTC---ESFDDITATLAALSPEIDISILYRGL-DPKRRHSLVSVVCYYG-----QHYHCFAYSHDQ 1594 (1691)
Q Consensus 1524 ~rlP~VLiIhLkr~s~~---~~~~KI~~~v~sfP~~LDLs~f~~g~-~~~~~Y~L~AVVvH~G-----GHY~AyVR~~~~ 1594 (1691)
.++|+||+|||+||... ....|+...+. ||..|||++|+... .....|+|+|||+|.| |||+||+|+..+
T Consensus 195 ~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~-fp~~Ldl~~~~~~~~~~~~~Y~L~~vI~H~G~~~~~GHY~~~~k~~~~ 273 (324)
T cd02668 195 TTLPPTLNFQLLRFVFDRKTGAKKKLNASIS-FPEILDMGEYLAESDEGSYVYELSGVLIHQGVSAYSGHYIAHIKDEQT 273 (324)
T ss_pred cCCCCeEEEEEEcceeecccCcceeCCcEEE-CCCeEechhhcccccCCCcEEEEEEEEEEcCCCCCCEeeEEEEECCCC
Confidence 99999999999988653 33467777775 99999999997543 3467999999999999 999999997667
Q ss_pred CcEEEEeCCcceEeCChHHHHhhhh---------------cCCcccEEEEec
Q 000306 1595 ERWIMYDDKTVKVVGSWSDVLSMCE---------------RGHLQPQEVVQD 1631 (1691)
Q Consensus 1595 ~~W~~FNDs~Vt~Vsewe~Vls~~~---------------~~~~qPYILFYe 1631 (1691)
++||.|||+.|++|+. +.|....+ .....||||||+
T Consensus 274 ~~W~~fdD~~V~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 274 GEWYKFNDEDVEEMPG-KPLKLGNSEDPAKPRKSEIKKGTHSSRTAYMLVYK 324 (324)
T ss_pred CcEEEEECCceEEcCH-HHhhcccccccccccccccCCCccccCceEEEEeC
Confidence 8999999999999864 55544332 235678999996
No 6
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.1e-43 Score=413.38 Aligned_cols=287 Identities=19% Similarity=0.265 Sum_probs=222.2
Q ss_pred cccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCC-CccCCcHHHHHHHHHHHHHhhcCCCCCCcccCcHHHHHHHh
Q 000306 1302 GLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEH-IHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRIALS 1380 (1691)
Q Consensus 1302 GL~NlG~~NTCYmNSVLQ~L~hip~FR~~ll~~~~~~~-~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~VsP~~L~~aL~ 1380 (1691)
||.|+| |||||||+||+|+|+|+||++++....... .+....++.++|+.||..|+.. ...++|..|+..++
T Consensus 1 Gl~N~G--ntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~-----~~~i~p~~~~~~l~ 73 (305)
T cd02657 1 GLTNLG--NTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKK-----QEPVPPIEFLQLLR 73 (305)
T ss_pred Cccccc--chhHHHHHHHHHhCCHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhC-----CCcCCcHHHHHHHH
Confidence 899999 799999999999999999999998654321 2233458999999999999853 24799999999999
Q ss_pred hhCCCCccc---hhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEeccC
Q 000306 1381 NLYPDSNFF---QEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYS 1457 (1691)
Q Consensus 1381 ~~~p~~~~F---~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~~s~~~~~~~SiI~~LF~G~l~s~i~C~~ 1457 (1691)
..++..... ..++||||||||..|||.|++++... ....++|+++|+|.+.+.++|..
T Consensus 74 ~~~~~f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~-------------------~~~~~~i~~~F~g~~~~~~~C~~ 134 (305)
T cd02657 74 MAFPQFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPGA-------------------GSKGSFIDQLFGIELETKMKCTE 134 (305)
T ss_pred HHCcCcccccCCCCccccCHHHHHHHHHHHHHHHhccc-------------------CCCCcHHHHhhceEEEEEEEcCC
Confidence 887762111 45589999999999999999987541 11257899999999999999999
Q ss_pred CC-cccccccccceeee-cchhhhhhhHhhcccCCHHHHHHHHhcccc-cccCCCCCCCCccc--eEEEEccCCCCeEEE
Q 000306 1458 CG-LESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMNHQ-LACDPGAGGCEKLN--YIHHILSTPPHVFTT 1532 (1691)
Q Consensus 1458 Cg-~~S~~~~~~sf~~l-I~~~~l~~~k~~~~~~SL~dlLk~~~~ee~-~~Cd~~c~~C~kk~--~kq~~I~rlP~VLiI 1532 (1691)
|+ .++.+ ++.|..+ ++.... ....++.++|+.++.++. ..|+ .|+... .++..|.++|+||+|
T Consensus 135 C~~~~~~~--~e~f~~Lsl~i~~~------~~~~~l~~~L~~~~~~~~~~~~~----~~~~~~~~~k~~~i~~lP~vLii 202 (305)
T cd02657 135 SPDEEEVS--TESEYKLQCHISIT------TEVNYLQDGLKKGLEEEIEKHSP----TLGRDAIYTKTSRISRLPKYLTV 202 (305)
T ss_pred CCCCCccc--cccceEEEeecCCC------cccccHHHHHHHhhhhhhhhcCc----ccCCCceEEEEEEeccCCcEEEE
Confidence 99 56655 3444433 222100 012578999988765443 3454 465553 468899999999999
Q ss_pred EEEeecCC---CcccccccccccccceeccccccccCCCCCcEEEEEEEEEeC-----CeEEEEEEeCCCCcEEEEeCCc
Q 000306 1533 VLGWQNTC---ESFDDITATLAALSPEIDISILYRGLDPKRRHSLVSVVCYYG-----QHYHCFAYSHDQERWIMYDDKT 1604 (1691)
Q Consensus 1533 hLkr~s~~---~~~~KI~~~v~sfP~~LDLs~f~~g~~~~~~Y~L~AVVvH~G-----GHY~AyVR~~~~~~W~~FNDs~ 1604 (1691)
||+||... ....|+...+. ||.+|||++|+. ....|+|+|||+|.| |||+||+|...+++||.|||+.
T Consensus 203 ~LkRF~~~~~~~~~~Ki~~~v~-fP~~Ldl~~~~~---~~~~Y~L~~vI~H~G~~~~~GHY~~~~~~~~~~~W~~fdD~~ 278 (305)
T cd02657 203 QFVRFFWKRDIQKKAKILRKVK-FPFELDLYELCT---PSGYYELVAVITHQGRSADSGHYVAWVRRKNDGKWIKFDDDK 278 (305)
T ss_pred EEECCccccccCceeecCcEEE-CCceEecccccC---CCCcEEEEEEEEecCCCCCCcEEEEEEEcCCCCeEEEEECCc
Confidence 99988753 23457777766 999999999876 457999999999999 9999999965558999999999
Q ss_pred ceEeCChHHHHhhhhcC-CcccEEEEec
Q 000306 1605 VKVVGSWSDVLSMCERG-HLQPQEVVQD 1631 (1691)
Q Consensus 1605 Vt~Vsewe~Vls~~~~~-~~qPYILFYe 1631 (1691)
|+.|++ ++|+...+.+ ..+||||||+
T Consensus 279 V~~~~~-~~v~~~~~~~~~~~aYiL~Y~ 305 (305)
T cd02657 279 VSEVTE-EDILKLSGGGDWHIAYILLYK 305 (305)
T ss_pred eEEeCH-HHHHhhcCCCCCceEEEEEEC
Confidence 999985 7777655444 3689999996
No 7
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1e-42 Score=414.74 Aligned_cols=299 Identities=22% Similarity=0.339 Sum_probs=226.4
Q ss_pred ccccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCC--CCccCCcHHHHHHHHHHHHHhhcCCCCCCcccCcHHHHHH
Q 000306 1301 AGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSE--HIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRIA 1378 (1691)
Q Consensus 1301 ~GL~NlG~~NTCYmNSVLQ~L~hip~FR~~ll~~~~~~--~~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~VsP~~L~~a 1378 (1691)
+||.|+| |||||||+||+|+|+|+||++|+...... ..+....|+.|+|+.+|..|+... ....+.|..|+.+
T Consensus 1 rGl~N~g--ntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~---~~~~~~~~~~l~~ 75 (328)
T cd02660 1 RGLINLG--ATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYSG---DRSPYGPINLLYL 75 (328)
T ss_pred CCccccC--cchHHHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHHhcCC---CCCCcCHHHHHHH
Confidence 6999999 79999999999999999999999865332 233445689999999999996331 3467899999999
Q ss_pred HhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEeccCC
Q 000306 1379 LSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSC 1458 (1691)
Q Consensus 1379 L~~~~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~~s~~~~~~~SiI~~LF~G~l~s~i~C~~C 1458 (1691)
++...+. |.++.||||||||.+|||.||+++........ ......++|+++|+|.+.+.++|..|
T Consensus 76 ~~~~~~~---f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~------------~~~~~~~~i~~~F~g~~~~~~~C~~C 140 (328)
T cd02660 76 SWKHSRN---LAGYSQQDAHEFFQFLLDQLHTHYGGDKNEAN------------DESHCNCIIHQTFSGSLQSSVTCQRC 140 (328)
T ss_pred HHhhchh---hcccccccHHHHHHHHHHHHHHHhhccccccc------------ccccCCceeEEecccEEEeeeEcCCC
Confidence 9877654 88899999999999999999998765422100 00112578999999999999999999
Q ss_pred Ccccccccccceeee-cchhhhhhh------HhhcccCCHHHHHHHHhcccccccC-CCCCCCCccc--eEEEEccCCCC
Q 000306 1459 GLESRHLKYTSFFHN-INASALRTM------KVMCAESSLDELLNLVEMNHQLACD-PGAGGCEKLN--YIHHILSTPPH 1528 (1691)
Q Consensus 1459 g~~S~~~~~~sf~~l-I~~~~l~~~------k~~~~~~SL~dlLk~~~~ee~~~Cd-~~c~~C~kk~--~kq~~I~rlP~ 1528 (1691)
++.+.. +++|..+ ++....... .......+|++||+.|+..+.+.-. ..|.+|+++. .++..|.++|+
T Consensus 141 ~~~s~~--~e~f~~lsl~i~~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~~~~~C~~C~~~~~~~~~~~i~~lP~ 218 (328)
T cd02660 141 GGVSTT--VDPFLDLSLDIPNKSTPSWALGESGVSGTPTLSDCLDRFTRPEKLGDFAYKCSGCGSTQEATKQLSIKKLPP 218 (328)
T ss_pred CCccce--ecccceeeeeccccccccccccccCCCCCCCHHHHHHHhcCccccCCCCccCCCCCCccceEEEEEecCCCc
Confidence 998877 4455433 222111000 0012347999999998765533211 1234688874 45788999999
Q ss_pred eEEEEEEeecCCC--cccccccccccccceecccccccc----------CCCCCcEEEEEEEEEeC----CeEEEEEEeC
Q 000306 1529 VFTTVLGWQNTCE--SFDDITATLAALSPEIDISILYRG----------LDPKRRHSLVSVVCYYG----QHYHCFAYSH 1592 (1691)
Q Consensus 1529 VLiIhLkr~s~~~--~~~KI~~~v~sfP~~LDLs~f~~g----------~~~~~~Y~L~AVVvH~G----GHY~AyVR~~ 1592 (1691)
||+|||+||.... ...|+...+. ||..|||++|+.. ......|+|+|||+|.| |||+||+|..
T Consensus 219 ~Lii~lkRf~~~~~~~~~K~~~~v~-fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~~~~~~~ 297 (328)
T cd02660 219 VLCFQLKRFEHSLNKTSRKIDTYVQ-FPLELNMTPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHKGTLDTGHYTAYCRQG 297 (328)
T ss_pred eeEEEEEeEEecCCCCCcCCCcEEe-CCCEechhhhcccccccccccccCCCCceEEEEEEEEeeccCCCCcEEEEEECC
Confidence 9999999887644 3467776665 9999999998763 23457999999999999 9999999953
Q ss_pred CCCcEEEEeCCcceEeCChHHHHhhhhcCCcccEEEEe
Q 000306 1593 DQERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQEVVQ 1630 (1691)
Q Consensus 1593 ~~~~W~~FNDs~Vt~Vsewe~Vls~~~~~~~qPYILFY 1630 (1691)
+++||+|||+.|++|+ +++|+. .+||||||
T Consensus 298 -~~~W~~~nD~~V~~~~-~~~v~~------~~ayil~Y 327 (328)
T cd02660 298 -DGQWFKFDDAMITRVS-EEEVLK------SQAYLLFY 327 (328)
T ss_pred -CCcEEEEECCeeEECC-HHHhcC------CCcEEEEe
Confidence 3899999999999986 466664 47999999
No 8
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.1e-42 Score=406.19 Aligned_cols=288 Identities=23% Similarity=0.358 Sum_probs=228.0
Q ss_pred cccccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCccCCcHHHHHHHHHHHHHhhcCCCCCCcccCcHHHHHHH
Q 000306 1300 GAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRIAL 1379 (1691)
Q Consensus 1300 ~~GL~NlG~~NTCYmNSVLQ~L~hip~FR~~ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~VsP~~L~~aL 1379 (1691)
|+||.|+| |||||||+||+|+|+|+||++++......+.+....|+.|+|+.+|..+..+ +...+.|..|..++
T Consensus 1 ~~GL~N~g--ntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~p~~~~~~l 74 (304)
T cd02661 1 GAGLQNLG--NTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERALAS----SGPGSAPRIFSSNL 74 (304)
T ss_pred CCCccccC--chhHHHHHHHHhhCCHHHHHHHhcchhhhhccCCcchHHHHHHHHHHHHHhC----CCCccChHHHHHHH
Confidence 58999999 7999999999999999999999875543344455669999999999998854 45689999999999
Q ss_pred hhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEeccCCC
Q 000306 1380 SNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCG 1459 (1691)
Q Consensus 1380 ~~~~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~~s~~~~~~~SiI~~LF~G~l~s~i~C~~Cg 1459 (1691)
....+. |..+.||||+|||.+|||.||+++.......... .......++++++|+|++.++++|..|+
T Consensus 75 ~~~~~~---f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~---------~~~~~~~~~i~~~F~g~~~~~~~C~~C~ 142 (304)
T cd02661 75 KQISKH---FRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAV---------DPSSQETTLVQQIFGGYLRSQVKCLNCK 142 (304)
T ss_pred HHHHHh---hcCcchhhHHHHHHHHHHHHHHHHhhhccccccc---------CccccCCChhhhcCCcEEeeeEEeCCCC
Confidence 887665 9999999999999999999999865432211000 0112236789999999999999999999
Q ss_pred cccccccccceeee-cchhhhhhhHhhcccCCHHHHHHHHhccc------ccccCCCCCCCCccc--eEEEEccCCCCeE
Q 000306 1460 LESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMNH------QLACDPGAGGCEKLN--YIHHILSTPPHVF 1530 (1691)
Q Consensus 1460 ~~S~~~~~~sf~~l-I~~~~l~~~k~~~~~~SL~dlLk~~~~ee------~~~Cd~~c~~C~kk~--~kq~~I~rlP~VL 1530 (1691)
..+.. ++.|..+ ++.. ...++.++|+.++..+ .|.|+ .|+++. .++..|.++|++|
T Consensus 143 ~~s~~--~e~~~~l~l~i~---------~~~~l~~~l~~~~~~e~~~~~~~~~C~----~C~~~~~~~~~~~i~~~P~iL 207 (304)
T cd02661 143 HVSNT--YDPFLDLSLDIK---------GADSLEDALEQFTKPEQLDGENKYKCE----RCKKKVKASKQLTIHRAPNVL 207 (304)
T ss_pred CCcCc--cccceeeeeecC---------CCCcHHHHHHHhcCceeeCCCCCeeCC----CCCCccceEEEEEEecCCcEE
Confidence 98876 4444332 2211 1258999999877544 35565 688874 4577899999999
Q ss_pred EEEEEeecCCCcccccccccccccceecccccccc-CCCCCcEEEEEEEEEeC-----CeEEEEEEeCCCCcEEEEeCCc
Q 000306 1531 TTVLGWQNTCESFDDITATLAALSPEIDISILYRG-LDPKRRHSLVSVVCYYG-----QHYHCFAYSHDQERWIMYDDKT 1604 (1691)
Q Consensus 1531 iIhLkr~s~~~~~~KI~~~v~sfP~~LDLs~f~~g-~~~~~~Y~L~AVVvH~G-----GHY~AyVR~~~~~~W~~FNDs~ 1604 (1691)
+|||+|+... ...|+...+. ||..|||.+|+.. ......|+|+|||+|.| |||+||+|. .+++||+|||..
T Consensus 208 ~i~l~Rf~~~-~~~Ki~~~v~-f~~~L~l~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~-~~~~W~~~nD~~ 284 (304)
T cd02661 208 TIHLKRFSNF-RGGKINKQIS-FPETLDLSPYMSQPNDGPLKYKLYAVLVHSGFSPHSGHYYCYVKS-SNGKWYNMDDSK 284 (304)
T ss_pred EEEEeccccC-CccccCCeEe-cCCeechhhccccCCCCCceeeEEEEEEECCCCCCCcCCEEEEEC-CCCCEEEEeCCe
Confidence 9999998875 4567877765 9999999998864 45678999999999999 999999996 368999999999
Q ss_pred ceEeCChHHHHhhhhcCCcccEEEEe
Q 000306 1605 VKVVGSWSDVLSMCERGHLQPQEVVQ 1630 (1691)
Q Consensus 1605 Vt~Vsewe~Vls~~~~~~~qPYILFY 1630 (1691)
|++| ++++|+. .+||||||
T Consensus 285 V~~v-~~~~v~~------~~aYil~Y 303 (304)
T cd02661 285 VSPV-SIETVLS------QKAYILFY 303 (304)
T ss_pred eEEC-CHHHhcC------CCcEEEEe
Confidence 9998 4577764 37999999
No 9
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.1e-42 Score=410.78 Aligned_cols=278 Identities=19% Similarity=0.267 Sum_probs=208.7
Q ss_pred CcccccccccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCccCCcHHHHHHHHHHH---HHhhcCCCCCCcccC
Q 000306 1295 GIDVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFT---ALSIASTDTRKEAVA 1371 (1691)
Q Consensus 1295 gs~~~~~GL~NlG~~NTCYmNSVLQ~L~hip~FR~~ll~~~~~~~~~~~~~cv~~aL~~LF~---~L~~ss~~~~~~~Vs 1371 (1691)
....+.+||.|+| |||||||+||||+|+|+||+.+++..... .....++.+|. .++.. ....+.
T Consensus 19 ~~~~~~~GL~NlG--nTCYmNSvLQ~L~~~p~fr~~l~~~~~~~-------~~~~~~q~~~~~l~~~~~~----~~~~~~ 85 (332)
T cd02671 19 ENLLPFVGLNNLG--NTCYLNSVLQVLYFCPGFKHGLKHLVSLI-------SSVEQLQSSFLLNPEKYND----ELANQA 85 (332)
T ss_pred ccCCCCcceeccC--ceEeHHHHHHHHHcChHHHHHHHhhhccc-------CcHHHHHHHHHHHHHHHhh----cccccC
Confidence 3456789999999 79999999999999999999987653110 11223444443 22221 223567
Q ss_pred cHHHHHHHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEE
Q 000306 1372 PTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFE 1451 (1691)
Q Consensus 1372 P~~L~~aL~~~~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~~s~~~~~~~SiI~~LF~G~l~s 1451 (1691)
|..|+.+++...|. |..+.||||||||.+|||.|+. +|+++|+|.+.+
T Consensus 86 P~~~~~~l~~~~~~---f~~~~QQDA~EFl~~LLd~L~~-----------------------------~i~~~F~g~~~~ 133 (332)
T cd02671 86 PRRLLNALREVNPM---YEGYLQHDAQEVLQCILGNIQE-----------------------------LVEKDFQGQLVL 133 (332)
T ss_pred HHHHHHHHHHhccc---cCCccccCHHHHHHHHHHHHHH-----------------------------HHHhhhceEEEE
Confidence 99999999988766 8999999999999999999984 367899999999
Q ss_pred EEeccCCCcccccccccceeee-cchhhhh--hhH--------hhcccCCHHHHHHHHhccc------ccccCCCCCCCC
Q 000306 1452 RMNCYSCGLESRHLKYTSFFHN-INASALR--TMK--------VMCAESSLDELLNLVEMNH------QLACDPGAGGCE 1514 (1691)
Q Consensus 1452 ~i~C~~Cg~~S~~~~~~sf~~l-I~~~~l~--~~k--------~~~~~~SL~dlLk~~~~ee------~~~Cd~~c~~C~ 1514 (1691)
+++|..|++.+.+ ++.|+.+ ++..... ... ...+..+|++||+.|+.+| +|.|+ .|+
T Consensus 134 ~~~C~~C~~~s~~--~E~f~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~----~C~ 207 (332)
T cd02671 134 RTRCLECETFTER--REDFQDISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCE----NCH 207 (332)
T ss_pred EEEeCCCCCeece--ecccEEEEEEeCCCcccccccccccccccccccCCHHHHHHHhCCcceecCCCCeeCC----CCC
Confidence 9999999998877 5566654 2222110 000 0012358999999987544 57776 587
Q ss_pred ccc--eEEEEccCCCCeEEEEEEeecCCC-------cccccccccccccceeccccccccCCCCCcEEEEEEEEEeC---
Q 000306 1515 KLN--YIHHILSTPPHVFTTVLGWQNTCE-------SFDDITATLAALSPEIDISILYRGLDPKRRHSLVSVVCYYG--- 1582 (1691)
Q Consensus 1515 kk~--~kq~~I~rlP~VLiIhLkr~s~~~-------~~~KI~~~v~sfP~~LDLs~f~~g~~~~~~Y~L~AVVvH~G--- 1582 (1691)
++. .++..|.++|+||+|||+||.... ...|++..+. ||..||+.++..+ .....|+|+|||+|.|
T Consensus 208 ~~~~a~k~~~~~~~P~vL~i~LkRF~~~~~~~~~~~~~~Ki~~~v~-fp~~L~~~~~~~~-~~~~~Y~L~~VI~H~G~~~ 285 (332)
T cd02671 208 HYTEAERSLLFDKLPEVITIHLKCFAANGSEFDCYGGLSKVNTPLL-TPLKLSLEEWSTK-PKNDVYRLFAVVMHSGATI 285 (332)
T ss_pred CceeEEEEEEEecCCCEEEEEeeeeccccccccccCCceecCcccc-CccccccccccCC-CCCCeEEEEEEEEEcCCCC
Confidence 764 457889999999999999998532 3467877765 9999999876543 3457999999999999
Q ss_pred --CeEEEEEEeCCCCcEEEEeCCcceEeCC--hHHHHhhhhcCCcccEEEEec
Q 000306 1583 --QHYHCFAYSHDQERWIMYDDKTVKVVGS--WSDVLSMCERGHLQPQEVVQD 1631 (1691)
Q Consensus 1583 --GHY~AyVR~~~~~~W~~FNDs~Vt~Vse--we~Vls~~~~~~~qPYILFYe 1631 (1691)
|||+|||| ||+|||+.|+.+++ +.+.....+.+..+||||||+
T Consensus 286 ~~GHY~a~vr------W~~fdD~~V~~~~~~~~~~~~~~~~~~~~~aYiLfY~ 332 (332)
T cd02671 286 SSGHYTAYVR------WLLFDDSEVKVTEEKDFLEALSPNTSSTSTPYLLFYK 332 (332)
T ss_pred CCCeEEEEEE------EEEEcCcceEEccHHHHHhhcCCCCCCCCceEEEEEC
Confidence 99999999 99999999999874 233334455677899999995
No 10
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.5e-42 Score=409.77 Aligned_cols=268 Identities=20% Similarity=0.338 Sum_probs=208.5
Q ss_pred cccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCccCCcHHHHHHHHHHHHHhhcCCCCCCcccCcHH-HHHHHh
Q 000306 1302 GLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTS-LRIALS 1380 (1691)
Q Consensus 1302 GL~NlG~~NTCYmNSVLQ~L~hip~FR~~ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~VsP~~-L~~aL~ 1380 (1691)
||.|+| |||||||+||+|+|+|+||+++++...+. .....++.++|+.+|..|... ...++.|.. +..++.
T Consensus 1 GL~NlG--nTCY~NS~LQ~L~~~~~fr~~ll~~~~~~--~~~~~~~~~~L~~lf~~l~~~----~~~~~~~~~~~l~~~~ 72 (327)
T cd02664 1 GLINLG--NTCYMNSVLQALFMAKDFRRQVLSLNLPR--LGDSQSVMKKLQLLQAHLMHT----QRRAEAPPDYFLEASR 72 (327)
T ss_pred CCcCCc--ccHHHHHHHHHHHCcHHHHHHHHcCCccc--cCCcchHHHHHHHHHHHHhhc----CCcccCCHHHHHHHhc
Confidence 899999 79999999999999999999999875431 223457889999999998854 345677765 555443
Q ss_pred hhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEeccCCCc
Q 000306 1381 NLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGL 1460 (1691)
Q Consensus 1381 ~~~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~~s~~~~~~~SiI~~LF~G~l~s~i~C~~Cg~ 1460 (1691)
. ..|..+.||||||||.+||+.|+. +|.++|+|++.++++|..|+.
T Consensus 73 --~---~~f~~~~QqDa~EFl~~lLd~l~~-----------------------------~i~~~F~G~~~~~i~C~~C~~ 118 (327)
T cd02664 73 --P---PWFTPGSQQDCSEYLRYLLDRLHT-----------------------------LIEKMFGGKLSTTIRCLNCNS 118 (327)
T ss_pred --c---cccCCCCcCCHHHHHHHHHHHHHH-----------------------------HHHhhCcEEeEeEEEcCCCCC
Confidence 1 238889999999999999999992 377999999999999999998
Q ss_pred ccccccccceeee-cchhhhhhhHhhcccCCHHHHHHHHhcc------cccccCCCCCCCCcc--ceEEEEccCCCCeEE
Q 000306 1461 ESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMN------HQLACDPGAGGCEKL--NYIHHILSTPPHVFT 1531 (1691)
Q Consensus 1461 ~S~~~~~~sf~~l-I~~~~l~~~k~~~~~~SL~dlLk~~~~e------e~~~Cd~~c~~C~kk--~~kq~~I~rlP~VLi 1531 (1691)
++.+ ++.|..+ ++. .++.++|+.|+.. +.|.|+ .|+++ ..++..|.++|+||+
T Consensus 119 ~s~~--~e~f~~l~L~i------------~sl~~~l~~~~~~E~l~g~n~~~C~----~C~~~~~a~k~~~i~~lP~vLi 180 (327)
T cd02664 119 TSAR--TERFRDLDLSF------------PSVQDLLNYFLSPEKLTGDNQYYCE----KCASLQDAEKEMKVTGAPEYLI 180 (327)
T ss_pred Eecc--cccceeeecCC------------CCHHHHHHHhcCeeEccCCCceeCC----ccCCccceeEEEEcccCChhhE
Confidence 8876 4444432 221 1688999887643 357786 58776 446889999999999
Q ss_pred EEEEeecCCC---cccccccccccccceecccccccc--------------------CCCCCcEEEEEEEEEeC-----C
Q 000306 1532 TVLGWQNTCE---SFDDITATLAALSPEIDISILYRG--------------------LDPKRRHSLVSVVCYYG-----Q 1583 (1691)
Q Consensus 1532 IhLkr~s~~~---~~~KI~~~v~sfP~~LDLs~f~~g--------------------~~~~~~Y~L~AVVvH~G-----G 1583 (1691)
|||+||.... ...||...+. ||..|||.++... ..+...|+|+|||+|.| |
T Consensus 181 i~LkRF~~~~~~~~~~Ki~~~v~-fp~~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~Vi~H~G~~~~~G 259 (327)
T cd02664 181 LTLLRFSYDQKTHVREKIMDNVS-INEVLSLPVRVESKSSESPLEKKEEESGDDGELVTRQVHYRLYAVVVHSGYSSESG 259 (327)
T ss_pred EEeeeeEEccccCcceecCceEe-cCCEEecCccccccccccccccccccccccccccCCCceEEEEEEEEEccCCCCCc
Confidence 9999886433 3468888776 9999999877521 12356999999999999 9
Q ss_pred eEEEEEEeCC--------------------CCcEEEEeCCcceEeCChHHHHhhh-hcCCcccEEEEec
Q 000306 1584 HYHCFAYSHD--------------------QERWIMYDDKTVKVVGSWSDVLSMC-ERGHLQPQEVVQD 1631 (1691)
Q Consensus 1584 HY~AyVR~~~--------------------~~~W~~FNDs~Vt~Vsewe~Vls~~-~~~~~qPYILFYe 1631 (1691)
|||||+|... .+.||.|||+.|+.|+ +++|.... +.....||||||+
T Consensus 260 HY~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~~~-~~~v~~~~~~~~~~~aYlLfY~ 327 (327)
T cd02664 260 HYFTYARDQTDADSTGQECPEPKDAEENDESKNWYLFNDSRVTFSS-FESVQNVTSRFPKDTPYILFYE 327 (327)
T ss_pred ceEEEEecCCccccccccccccccccccCCCCCEEEEeCCceEECC-HHHHHHhhCCCCCCCEEEEEeC
Confidence 9999999643 3789999999999986 46676522 2345689999996
No 11
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.4e-41 Score=402.23 Aligned_cols=280 Identities=15% Similarity=0.232 Sum_probs=209.6
Q ss_pred cccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCC--CCccCCcHHHHHHHHHHHHHhhcCCC----------CCCcc
Q 000306 1302 GLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSE--HIHVGEPCVVCALYEIFTALSIASTD----------TRKEA 1369 (1691)
Q Consensus 1302 GL~NlG~~NTCYmNSVLQ~L~hip~FR~~ll~~~~~~--~~~~~~~cv~~aL~~LF~~L~~ss~~----------~~~~~ 1369 (1691)
||.|+| |||||||+||||+|+|+||++|+...... .......|+.++|+.+|..|+..... ....+
T Consensus 1 GL~NlG--NTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 78 (311)
T cd02658 1 GLRNLG--NSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVG 78 (311)
T ss_pred CcccCC--cchHHHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccc
Confidence 899999 89999999999999999999998733211 11122347999999999998753211 02457
Q ss_pred cCcHHHHHHHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceE
Q 000306 1370 VAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDI 1449 (1691)
Q Consensus 1370 VsP~~L~~aL~~~~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~~s~~~~~~~SiI~~LF~G~l 1449 (1691)
+.|..|+.+++..+|. |..+.||||||||.+||+.|++++.... ...+.++|+|.+
T Consensus 79 i~p~~~~~~l~~~~~~---f~~~~QqDa~Efl~~ll~~l~~~~~~~~---------------------~~~~~~~f~~~~ 134 (311)
T cd02658 79 IKPSMFKALIGKGHPE---FSTMRQQDALEFLLHLIDKLDRESFKNL---------------------GLNPNDLFKFMI 134 (311)
T ss_pred cCcHHHHHHHhccChh---hcccccccHHHHHHHHHHHHHHhhcccc---------------------cCCchhheEEEe
Confidence 9999999999987776 9999999999999999999999875211 234779999999
Q ss_pred EEEEeccCCCcccccccccceeee---cchhhhhh---hHhhcccCCHHHHHHHHhccccc--ccCCCCCCCCccc--eE
Q 000306 1450 FERMNCYSCGLESRHLKYTSFFHN---INASALRT---MKVMCAESSLDELLNLVEMNHQL--ACDPGAGGCEKLN--YI 1519 (1691)
Q Consensus 1450 ~s~i~C~~Cg~~S~~~~~~sf~~l---I~~~~l~~---~k~~~~~~SL~dlLk~~~~ee~~--~Cd~~c~~C~kk~--~k 1519 (1691)
.+.++|..|+..+... +.+..+ ++...... ........+|+++|+.|+..+.+ .|+ .|+++. .+
T Consensus 135 ~~~i~C~~C~~~s~~~--e~~~~lsL~l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i~~~C~----~C~~~~~a~k 208 (311)
T cd02658 135 EDRLECLSCKKVKYTS--ELSEILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIEDFCS----TCKEKTTATK 208 (311)
T ss_pred eEEEEcCCCCCEEEee--cceeEEeeecccccccccccccccCCCCCHHHHHHHHcCccccccccc----CCCCcccEEE
Confidence 9999999999776653 333322 32211000 00011346999999998876644 454 588764 46
Q ss_pred EEEccCCCCeEEEEEEeecCC--CcccccccccccccceeccccccccCCCCCcEEEEEEEEEeC-----CeEEEEEEeC
Q 000306 1520 HHILSTPPHVFTTVLGWQNTC--ESFDDITATLAALSPEIDISILYRGLDPKRRHSLVSVVCYYG-----QHYHCFAYSH 1592 (1691)
Q Consensus 1520 q~~I~rlP~VLiIhLkr~s~~--~~~~KI~~~v~sfP~~LDLs~f~~g~~~~~~Y~L~AVVvH~G-----GHY~AyVR~~ 1592 (1691)
+..|.++|+||+|||+||... ....|+...+. ||..| ....|+|+|||+|.| |||+||+|..
T Consensus 209 ~~~i~~lP~vLii~LkRF~~~~~~~~~Ki~~~v~-~p~~l----------~~~~Y~L~~vI~H~G~~~~~GHY~~~vk~~ 277 (311)
T cd02658 209 TTGFKTFPDYLVINMKRFQLLENWVPKKLDVPID-VPEEL----------GPGKYELIAFISHKGTSVHSGHYVAHIKKE 277 (311)
T ss_pred EEEeecCCceEEEEeEEEEecCCCceEeeccccc-cCCcC----------CCCcEEEEEEEEccCCCCCCcceEEEEeCC
Confidence 888999999999999988763 23356665543 66655 346899999999999 9999999954
Q ss_pred --CCCcEEEEeCCcceEeCChHHHHhhhhcCCcccEEEEec
Q 000306 1593 --DQERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQEVVQD 1631 (1691)
Q Consensus 1593 --~~~~W~~FNDs~Vt~Vsewe~Vls~~~~~~~qPYILFYe 1631 (1691)
.+++||.|||+.|+++++. +|+ ..+||||||+
T Consensus 278 ~~~~~~W~~fnD~~V~~~~~~-~~~------~~~~YilfY~ 311 (311)
T cd02658 278 IDGEGKWVLFNDEKVVASQDP-PEM------KKLGYIYFYQ 311 (311)
T ss_pred CCCCCCEEEecCceeEECCcc-ccc------CCcceEEEEC
Confidence 2489999999999999863 342 4689999996
No 12
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.8e-42 Score=399.57 Aligned_cols=239 Identities=23% Similarity=0.383 Sum_probs=191.6
Q ss_pred cccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCccCCcHHHHHHHHHHHHHhhcCCCCCCcccCcHHHHHHHhh
Q 000306 1302 GLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRIALSN 1381 (1691)
Q Consensus 1302 GL~NlG~~NTCYmNSVLQ~L~hip~FR~~ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~VsP~~L~~aL~~ 1381 (1691)
||.|+| ||||||||||+|+|+|+||++|+. +|..|+..+..
T Consensus 1 Gl~N~G--ntCy~NsvLQ~L~~~~~~~~~~l~-------------------------------------~P~~~~~~l~~ 41 (279)
T cd02667 1 GLSNLG--NTCFFNAVMQNLSQTPALRELLSE-------------------------------------TPKELFSQVCR 41 (279)
T ss_pred CCcCCC--CchHHHHHHHHHhcCHHHHHHHHH-------------------------------------CHHHHHHHHHH
Confidence 899999 799999999999999999999986 34445555554
Q ss_pred hCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEeccCCCcc
Q 000306 1382 LYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGLE 1461 (1691)
Q Consensus 1382 ~~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~~s~~~~~~~SiI~~LF~G~l~s~i~C~~Cg~~ 1461 (1691)
..+. |..++||||+|||.+|||.|+. +|+++|+|++.++++|..|+..
T Consensus 42 ~~~~---f~~~~QqDA~Efl~~lld~l~~-----------------------------~i~~~F~G~~~~~i~C~~C~~~ 89 (279)
T cd02667 42 KAPQ---FKGYQQQDSHELLRYLLDGLRT-----------------------------FIDSIFGGELTSTIMCESCGTV 89 (279)
T ss_pred hhHh---hcCCchhhHHHHHHHHHHHHHH-----------------------------hhhhhcceEEEEEEEcCCCCCE
Confidence 4444 8889999999999999999992 3678999999999999999998
Q ss_pred cccccccceeee-cchhhhhhhHhhcccCCHHHHHHHHhcccc------cccCCCCCCCCccceEEEEccCCCCeEEEEE
Q 000306 1462 SRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMNHQ------LACDPGAGGCEKLNYIHHILSTPPHVFTTVL 1534 (1691)
Q Consensus 1462 S~~~~~~sf~~l-I~~~~l~~~k~~~~~~SL~dlLk~~~~ee~------~~Cd~~c~~C~kk~~kq~~I~rlP~VLiIhL 1534 (1691)
+.+ .+.|+.+ ++... ......+|++||+.|+..+. |.|+ +|++ +.++..|.++|+||+|||
T Consensus 90 s~~--~E~f~~L~Lp~~~-----~~~~~~sL~~~L~~~~~~E~l~~~~~~~C~----~C~~-a~k~~~i~~~P~~Lii~L 157 (279)
T cd02667 90 SLV--YEPFLDLSLPRSD-----EIKSECSIESCLKQFTEVEILEGNNKFACE----NCTK-AKKQYLISKLPPVLVIHL 157 (279)
T ss_pred eCc--cccceEEecCCCc-----ccCCCCCHHHHHHhhcCeeEecCCCcccCC----ccCc-eeeEeEhhhCCCeEEEEE
Confidence 876 4455543 33210 11234789999999876543 5554 6877 667889999999999999
Q ss_pred EeecCCC--cccccccccccccceecccccccc------CCCCCcEEEEEEEEEeC----CeEEEEEEeCC---------
Q 000306 1535 GWQNTCE--SFDDITATLAALSPEIDISILYRG------LDPKRRHSLVSVVCYYG----QHYHCFAYSHD--------- 1593 (1691)
Q Consensus 1535 kr~s~~~--~~~KI~~~v~sfP~~LDLs~f~~g------~~~~~~Y~L~AVVvH~G----GHY~AyVR~~~--------- 1593 (1691)
+||.... ...|+...+. ||..|||++|+.. ......|+|+|||+|.| |||+||+|...
T Consensus 158 kRF~~~~~~~~~Ki~~~v~-fP~~Ldl~~~~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~GHY~a~v~~~~~~~~~~~~~ 236 (279)
T cd02667 158 KRFQQPRSANLRKVSRHVS-FPEILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTMRSGHYVAYVKVRPPQQRLSDLT 236 (279)
T ss_pred eccccCcccCceecCceEe-CCCccchhhccCccccccccCCCceEEEEEEEEEeCCCCCCEeEEEEEcCcccccccccc
Confidence 9987654 3467777765 9999999999864 23457999999999999 99999999643
Q ss_pred ------------CCcEEEEeCCcceEeCChHHHHhhhhcCCcccEEEEec
Q 000306 1594 ------------QERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQEVVQD 1631 (1691)
Q Consensus 1594 ------------~~~W~~FNDs~Vt~Vsewe~Vls~~~~~~~qPYILFYe 1631 (1691)
++.||+|||+.|++|+. +.|+. ..||||||+
T Consensus 237 ~~~~~~~~~~~~~~~W~~~dD~~V~~v~~-~~v~~------~~aYiLfYe 279 (279)
T cd02667 237 KSKPAADEAGPGSGQWYYISDSDVREVSL-EEVLK------SEAYLLFYE 279 (279)
T ss_pred ccccccccCCCCCCcEEEEECCccEECCH-HHhcc------CCcEEEEeC
Confidence 78999999999999865 55653 469999996
No 13
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.3e-41 Score=416.39 Aligned_cols=292 Identities=18% Similarity=0.216 Sum_probs=219.0
Q ss_pred cccccccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCccCCcHHHHHHHHHHHHHhhcCCCCCCcccCcHHHHH
Q 000306 1298 VYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRI 1377 (1691)
Q Consensus 1298 ~~~~GL~NlG~~NTCYmNSVLQ~L~hip~FR~~ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~VsP~~L~~ 1377 (1691)
.+.+||.|+| ||||||||||+|+|+|+||++|+.............++.++|..+|+.++... ..+..++|..|+.
T Consensus 117 ~G~vGL~NlG--nTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~~~~~~~l~~~l~~l~~kl~~~~--~~~~~isP~~fl~ 192 (440)
T cd02669 117 PGFVGLNNIK--NNDYANVIIQALSHVKPIRNFFLLYENYENIKDRKSELVKRLSELIRKIWNPR--NFKGHVSPHELLQ 192 (440)
T ss_pred CCccCccCCC--CchHHHHHHHHHHCCHHHHHHHhhccccccccCCCcHHHHHHHHHHHHHhccc--cCCCccCHHHHHH
Confidence 3568999999 79999999999999999999999865322111234589999999999998542 1357899999999
Q ss_pred HHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEeccC
Q 000306 1378 ALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYS 1457 (1691)
Q Consensus 1378 aL~~~~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~~s~~~~~~~SiI~~LF~G~l~s~i~C~~ 1457 (1691)
+++...+ ..|..++||||||||.+|||.||+++.... ....++|+++|+|++.+.++|..
T Consensus 193 ~l~~~~~--~~f~~~~QqDA~EFl~~LLd~L~~~l~~~~------------------~~~~~ii~~~F~G~l~~~~~c~~ 252 (440)
T cd02669 193 AVSKVSK--KKFSITEQSDPVEFLSWLLNTLHKDLGGSK------------------KPNSSIIHDCFQGKVQIETQKIK 252 (440)
T ss_pred HHHhhcc--cccCCcccCCHHHHHHHHHHHHHHHhccCC------------------CCCCCcceeccCceEEEEEEeec
Confidence 9986542 358899999999999999999999875421 11368999999999999999886
Q ss_pred CCccc-------------ccccccceeee---cchhhhh---hhHhhcccCCHHHHHHHHhcccccccCCCCCCCCcc--
Q 000306 1458 CGLES-------------RHLKYTSFFHN---INASALR---TMKVMCAESSLDELLNLVEMNHQLACDPGAGGCEKL-- 1516 (1691)
Q Consensus 1458 Cg~~S-------------~~~~~~sf~~l---I~~~~l~---~~k~~~~~~SL~dlLk~~~~ee~~~Cd~~c~~C~kk-- 1516 (1691)
|...+ ....+++|+.+ |+..+.. ......+..++.++|+.|. |+ .|...
T Consensus 253 ~~~~~~~~~~~~~~c~~~~s~~~~pF~~LsLdip~~~~~~~~~~~~~l~~~~l~e~L~ky~------~~----~c~~~~~ 322 (440)
T cd02669 253 PHAEEEGSKDKFFKDSRVKKTSVSPFLLLTLDLPPPPLFKDGNEENIIPQVPLKQLLKKYD------GK----TETELKD 322 (440)
T ss_pred ccccccccccccccccccceeeeccceEEEecCCCCccccccccccccCcccHHHHHHhcC------Cc----cceeccc
Confidence 65321 11113455544 3332111 0122345578999997654 43 23332
Q ss_pred ceEEEEccCCCCeEEEEEEeecCCCcc-cccccccccccce-eccccccc----cCCCCCcEEEEEEEEEeC-----CeE
Q 000306 1517 NYIHHILSTPPHVFTTVLGWQNTCESF-DDITATLAALSPE-IDISILYR----GLDPKRRHSLVSVVCYYG-----QHY 1585 (1691)
Q Consensus 1517 ~~kq~~I~rlP~VLiIhLkr~s~~~~~-~KI~~~v~sfP~~-LDLs~f~~----g~~~~~~Y~L~AVVvH~G-----GHY 1585 (1691)
..++..|.++|+||+|||+||...... .|+.. .+.||.. |||++|+. +......|+|+|||+|.| |||
T Consensus 323 a~k~~~I~~LP~vLiihLKRF~~~~~~~~K~~t-~V~FP~~~LDm~~y~~~~~~~~~~~~~Y~L~avI~H~G~~~~sGHY 401 (440)
T cd02669 323 SLKRYLISRLPKYLIFHIKRFSKNNFFKEKNPT-IVNFPIKNLDLSDYVHFDKPSLNLSTKYNLVANIVHEGTPQEDGTW 401 (440)
T ss_pred ceEEEEEeeCCcEEEEEEecccCCCCccccCCC-EEECCCCccchhhhhCccccccCCCceEEEEEEEEEeccCCCCeeE
Confidence 467899999999999999999875433 45554 4569997 89999984 334567999999999999 999
Q ss_pred EEEEEeCCCCcEEEEeCCcceEeCChHHHHhhhhcCCcccEEEEec
Q 000306 1586 HCFAYSHDQERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQEVVQD 1631 (1691)
Q Consensus 1586 ~AyVR~~~~~~W~~FNDs~Vt~Vsewe~Vls~~~~~~~qPYILFYe 1631 (1691)
+||+|+..+|+||.|||+.|++|+. +.|+. .++|||||+
T Consensus 402 ~a~v~~~~~~~W~~fdD~~V~~v~~-~~v~~------~eaYll~Y~ 440 (440)
T cd02669 402 RVQLRHKSTNKWFEIQDLNVKEVLP-QLIFL------SESYIQIWE 440 (440)
T ss_pred EEEEEcCCCCeEEEEECCeeeEcCH-HHhcc------CCceEEEeC
Confidence 9999976689999999999999865 55543 578999996
No 14
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=8.3e-41 Score=399.30 Aligned_cols=288 Identities=19% Similarity=0.282 Sum_probs=218.7
Q ss_pred cccccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCccCCcHHHHHHHHHHHHHhhcCCCCCCcccCcHHHHHHH
Q 000306 1300 GAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRIAL 1379 (1691)
Q Consensus 1300 ~~GL~NlG~~NTCYmNSVLQ~L~hip~FR~~ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~VsP~~L~~aL 1379 (1691)
.+||.|+| |||||||+||+|+|+|+||++++..... .......++.++|+.||..|.... ...+.|..+. .+
T Consensus 2 ~~GL~N~G--ntCY~NsvLQ~L~~~~~f~~~~l~~~~~-~~~~~~~~~~~~l~~lf~~~~~~~----~~~~~~~~~~-~~ 73 (334)
T cd02659 2 YVGLKNQG--ATCYMNSLLQQLYMTPEFRNAVYSIPPT-EDDDDNKSVPLALQRLFLFLQLSE----SPVKTTELTD-KT 73 (334)
T ss_pred CCCcccCC--cchHHHHHHHHHhcCHHHHHHHHcCCCc-ccCcccccHHHHHHHHHHHHHhCC----ccccCcchhh-ee
Confidence 57999999 7999999999999999999999986321 223345589999999999998652 2345554443 12
Q ss_pred hhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEeccCCC
Q 000306 1380 SNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCG 1459 (1691)
Q Consensus 1380 ~~~~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~~s~~~~~~~SiI~~LF~G~l~s~i~C~~Cg 1459 (1691)
.... ...|..+.||||+|||.+||+.|++++.... ..++|.++|+|.+...++|..|+
T Consensus 74 ~~~~--~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~--------------------~~~~i~~lF~g~~~~~~~C~~C~ 131 (334)
T cd02659 74 RSFG--WDSLNTFEQHDVQEFFRVLFDKLEEKLKGTG--------------------QEGLIKNLFGGKLVNYIICKECP 131 (334)
T ss_pred ccCC--CCCCCcccchhHHHHHHHHHHHHHHHhccCc--------------------ccchhhhhCceEEEeEEEecCCC
Confidence 2211 1347788999999999999999999875421 14678999999999999999998
Q ss_pred cccccccccceeee-cchhhhhhhHhhcccCCHHHHHHHHhccc------ccccCCCCCCCCcc--ceEEEEccCCCCeE
Q 000306 1460 LESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMNH------QLACDPGAGGCEKL--NYIHHILSTPPHVF 1530 (1691)
Q Consensus 1460 ~~S~~~~~~sf~~l-I~~~~l~~~k~~~~~~SL~dlLk~~~~ee------~~~Cd~~c~~C~kk--~~kq~~I~rlP~VL 1530 (1691)
..+.. .+.|+.+ ++.. +..+++++|+.|...+ .|.|+ +|+++ ..++..|.++|+||
T Consensus 132 ~~s~~--~e~f~~l~l~i~---------~~~~l~~~l~~~~~~e~l~~~~~~~C~----~C~~~~~~~k~~~i~~lP~vL 196 (334)
T cd02659 132 HESER--EEYFLDLQVAVK---------GKKNLEESLDAYVQGETLEGDNKYFCE----KCGKKVDAEKGVCFKKLPPVL 196 (334)
T ss_pred ceecc--cccceEEEEEcC---------CCCCHHHHHHHhcCeeEecCCccEecC----cCCCcccEEEEEEeecCCCEE
Confidence 87776 3444433 2221 2367999998887544 36775 58887 34578899999999
Q ss_pred EEEEEeecCC---CcccccccccccccceeccccccccC------------CCCCcEEEEEEEEEeC----CeEEEEEEe
Q 000306 1531 TTVLGWQNTC---ESFDDITATLAALSPEIDISILYRGL------------DPKRRHSLVSVVCYYG----QHYHCFAYS 1591 (1691)
Q Consensus 1531 iIhLkr~s~~---~~~~KI~~~v~sfP~~LDLs~f~~g~------------~~~~~Y~L~AVVvH~G----GHY~AyVR~ 1591 (1691)
+|||+||... ....|+...+. ||..|||++|+... .....|+|+|||+|.| |||+||+|.
T Consensus 197 ii~l~Rf~~~~~~~~~~K~~~~v~-fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~vk~ 275 (334)
T cd02659 197 TLQLKRFEFDFETMMRIKINDRFE-FPLELDMEPYTEKGLAKKEGDSEKKDSESYIYELHGVLVHSGDAHGGHYYSYIKD 275 (334)
T ss_pred EEEeeeeEEccccCcceeCCceEe-CCceecCccccccccccccccccccCCCCeeEEEEEEEEecCCCCCCCeEEEEEC
Confidence 9999987642 23456666655 99999999887532 2346899999999999 999999997
Q ss_pred CCCCcEEEEeCCcceEeCChHHHHhhhhcCC----------------cccEEEEeccCC
Q 000306 1592 HDQERWIMYDDKTVKVVGSWSDVLSMCERGH----------------LQPQEVVQDYDE 1634 (1691)
Q Consensus 1592 ~~~~~W~~FNDs~Vt~Vsewe~Vls~~~~~~----------------~qPYILFYe~~e 1634 (1691)
..+++|+.|||+.|++|+ +++|+..|.++. ..||||||++.+
T Consensus 276 ~~~~~W~~~nD~~V~~i~-~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~ay~l~Y~~~~ 333 (334)
T cd02659 276 RDDGKWYKFNDDVVTPFD-PNDAEEECFGGEETQKTYDSGPRAFKRTTNAYMLFYERKS 333 (334)
T ss_pred CCCCceEEEeCcccEECC-HHHHHHHcCCCccccccccccccccccccceEEEEEEEeC
Confidence 667999999999999986 477876655443 468999999753
No 15
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-41 Score=396.25 Aligned_cols=313 Identities=21% Similarity=0.322 Sum_probs=237.4
Q ss_pred cccccccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCccCCc-----HHHHHHHHHHHHHhhcCCCCCCcccCc
Q 000306 1298 VYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEP-----CVVCALYEIFTALSIASTDTRKEAVAP 1372 (1691)
Q Consensus 1298 ~~~~GL~NlG~~NTCYmNSVLQ~L~hip~FR~~ll~~~~~~~~~~~~~-----cv~~aL~~LF~~L~~ss~~~~~~~VsP 1372 (1691)
++.+||.|+| |||||||.||||.||+.+|+||+...+..+.+.+++ .++.+...|++++... ...++.|
T Consensus 263 ~GtcGL~NlG--NTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~----~~haf~P 336 (823)
T COG5560 263 AGTCGLRNLG--NTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDG----NLHAFTP 336 (823)
T ss_pred ccccceecCC--cceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCc----cccccCh
Confidence 4667999999 899999999999999999999999776544444333 6888899999988843 5679999
Q ss_pred HHHHHHHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcc-----c-----ccccCCCCccC--CCCcc
Q 000306 1373 TSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTES-----V-----ESNCMGSWDCT--NSACI 1440 (1691)
Q Consensus 1373 ~~L~~aL~~~~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es-----~-----es~~~~s~~~~--~~~Si 1440 (1691)
..|+..++.++.. |.+++|||+|||+.+|||.||+.++.....+..+. . .......|..+ .+.++
T Consensus 337 s~fK~tIG~fn~~---fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSi 413 (823)
T COG5560 337 SGFKKTIGSFNEE---FSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSI 413 (823)
T ss_pred HHHHHHHhhhHHH---hcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCccc
Confidence 9999999998655 99999999999999999999999974322111110 0 01111234433 25799
Q ss_pred ccccccceEEEEEeccCCCcccccccccceeee---cchh----------------------------------------
Q 000306 1441 VHSLFGMDIFERMNCYSCGLESRHLKYTSFFHN---INAS---------------------------------------- 1477 (1691)
Q Consensus 1441 I~~LF~G~l~s~i~C~~Cg~~S~~~~~~sf~~l---I~~~---------------------------------------- 1477 (1691)
|+++|.|.+++++.|..|+.+|.+ |++|+.+ ++..
T Consensus 414 ItdLFqgmyKSTL~Cp~C~~vsit--fDPfmdlTLPLPvs~vw~htiv~fp~~g~~~pl~iel~~sSt~~~lk~lv~~~~ 491 (823)
T COG5560 414 ITDLFQGMYKSTLTCPGCGSVSIT--FDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKIELDASSTIRGLKKLVDAEY 491 (823)
T ss_pred HHHHHHHHhhceeeccCcCceeee--ecchhhccccCchhhcccccEEEECCCCCCCceEEEEeccchHHHHHHHHHHHh
Confidence 999999999999999999998876 3343221 0000
Q ss_pred --------------------------------------------------------------------------------
Q 000306 1478 -------------------------------------------------------------------------------- 1477 (1691)
Q Consensus 1478 -------------------------------------------------------------------------------- 1477 (1691)
T Consensus 492 gk~gc~ei~v~~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe~~~ngi~vpvvh~~~~~gYks~rlFg~pflqlnv~~~ 571 (823)
T COG5560 492 GKLGCFEIKVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYETNDNGIEVPVVHLRIEKGYKSKRLFGDPFLQLNVLIK 571 (823)
T ss_pred ccCCccceeEEEEEeccchhhcchhhHHHHhhcCccceEEEeecCCCCeEEEEEeccccccccchhhhCCcceEEEeecc
Confidence
Q ss_pred -h----h--------h----------------------------------------------------------------
Q 000306 1478 -A----L--------R---------------------------------------------------------------- 1480 (1691)
Q Consensus 1478 -~----l--------~---------------------------------------------------------------- 1480 (1691)
. + .
T Consensus 572 ~~i~~kLvkE~~ell~~v~~k~tdvd~~~~q~~l~r~es~p~~wl~l~teid~kree~veeE~~~n~nd~vvi~cew~ek 651 (823)
T COG5560 572 ASIYDKLVKEFEELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEEEGQMNFNDAVVISCEWEEK 651 (823)
T ss_pred hhhHHHHHHHHHHHHHHHhhcchhhhhhhhhccchhcccCcchhhhhhhhccchhhhhhhhhhccCCCcceEEeeecccc
Confidence 0 0 0
Q ss_pred ---------------hhHhhcccCCHHHHHHHHhccc------ccccCCCCCCCCcc--ceEEEEccCCCCeEEEEEEee
Q 000306 1481 ---------------TMKVMCAESSLDELLNLVEMNH------QLACDPGAGGCEKL--NYIHHILSTPPHVFTTVLGWQ 1537 (1691)
Q Consensus 1481 ---------------~~k~~~~~~SL~dlLk~~~~ee------~~~Cd~~c~~C~kk--~~kq~~I~rlP~VLiIhLkr~ 1537 (1691)
.+....+..+|++||..|...| -|+|+ +|+.. ++|+..|+++|.||+|||+||
T Consensus 652 ~y~~lFsy~~lw~~~ei~~~~rtiTL~dCl~eFskpEqLgl~DswyCp----gCkefrqasKqmelwrlP~iLiihLkRF 727 (823)
T COG5560 652 RYLSLFSYDPLWTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCP----GCKEFRQASKQMELWRLPMILIIHLKRF 727 (823)
T ss_pred chhhhhcCCccchhHHhhhccCCCcHHHHHHHhccHhhcCCcccccCC----chHhhhhhhhhhhhhcCChheeeehhhh
Confidence 0000014468999999987654 46886 68766 567999999999999999998
Q ss_pred cCCCc-ccccccccccccce-eccccccc-cCCCCCcEEEEEEEEEeC----CeEEEEEEeCCCCcEEEEeCCcceEeCC
Q 000306 1538 NTCES-FDDITATLAALSPE-IDISILYR-GLDPKRRHSLVSVVCYYG----QHYHCFAYSHDQERWIMYDDKTVKVVGS 1610 (1691)
Q Consensus 1538 s~~~~-~~KI~~~v~sfP~~-LDLs~f~~-g~~~~~~Y~L~AVVvH~G----GHY~AyVR~~~~~~W~~FNDs~Vt~Vse 1610 (1691)
+...+ ..||...+. ||.. |||+.+.- -.++...|+||||=+|+| ||||||+|+..+++||+|||+.|++|++
T Consensus 728 ss~rsfrdKiddlVe-yPiddldLs~~~~~~~~p~liydlyavDNHygglsgGHYtAyarn~~n~~wy~fdDsritevdp 806 (823)
T COG5560 728 SSVRSFRDKIDDLVE-YPIDDLDLSGVEYMVDDPRLIYDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVDP 806 (823)
T ss_pred hhcccchhhhhhhhc-cccccccccceEEeecCcceEEEeeeccccccccCCcceeeeeecccCCceEEecCccccccCc
Confidence 86444 467776666 7764 99986532 245668999999999999 9999999988899999999999999998
Q ss_pred hHHHHhhhhcCCcccEEEEeccC
Q 000306 1611 WSDVLSMCERGHLQPQEVVQDYD 1633 (1691)
Q Consensus 1611 we~Vls~~~~~~~qPYILFYe~~ 1633 (1691)
.+.|.+ .+|+|||+|.
T Consensus 807 ed~vts-------saYvLFyrrk 822 (823)
T COG5560 807 EDSVTS-------SAYVLFYRRK 822 (823)
T ss_pred cccccc-------eeEEEEEEec
Confidence 565543 5899999975
No 16
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-37 Score=343.92 Aligned_cols=310 Identities=19% Similarity=0.276 Sum_probs=208.3
Q ss_pred cccccccccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCC----CCccCCcHHHHHHHHHHHHHhhcCCCCCCcccC
Q 000306 1296 IDVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSE----HIHVGEPCVVCALYEIFTALSIASTDTRKEAVA 1371 (1691)
Q Consensus 1296 s~~~~~GL~NlG~~NTCYmNSVLQ~L~hip~FR~~ll~~~~~~----~~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~Vs 1371 (1691)
....+.||+|.| ||||||++||||+.+..+...|+...+.. +...+.+ ...+...|..++.+.-......|+
T Consensus 67 dn~~p~GL~N~G--NtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~--g~~~~k~F~~l~~~~~~Hg~~sis 142 (415)
T COG5533 67 DNLPPNGLRNKG--NTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKP--GSNAFKQFIALYETPGCHGPKSIS 142 (415)
T ss_pred cccCCccccccC--ceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCc--chhHHHHHHHHHhccccCCCcccc
Confidence 356788999999 89999999999999999988544432221 1111111 223344555555433223556799
Q ss_pred cHHHHHHHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcc-ccc--c-----c-----CCCCcc--CC
Q 000306 1372 PTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTES-VES--N-----C-----MGSWDC--TN 1436 (1691)
Q Consensus 1372 P~~L~~aL~~~~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es-~es--~-----~-----~~s~~~--~~ 1436 (1691)
|..|+..++.+.+. |++.+|||||||+.++||.||++++.....+.... .+. . + .-.|.. ..
T Consensus 143 ~~nF~~i~~~~n~~---fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~s 219 (415)
T COG5533 143 PRNFIDILSGRNKL---FSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRS 219 (415)
T ss_pred hHHHHHHHcccccc---ccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhcc
Confidence 99999999887655 99999999999999999999999976643221111 000 0 0 011332 23
Q ss_pred CCccccccccceEEEEEeccCCCcccccccccceeee-cchhhhhhhHhhcccCCHHHHHHHHh------cccccccCCC
Q 000306 1437 SACIVHSLFGMDIFERMNCYSCGLESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVE------MNHQLACDPG 1509 (1691)
Q Consensus 1437 ~~SiI~~LF~G~l~s~i~C~~Cg~~S~~~~~~sf~~l-I~~~~l~~~k~~~~~~SL~dlLk~~~------~ee~~~Cd~~ 1509 (1691)
+.++|-+.|.|+..++++|..|++.|++ |..|..+ |+...+.. ..+.||+..|. +.+.|.|+
T Consensus 220 n~S~v~~~f~gq~~srlqC~~C~~TStT--~a~fs~l~vp~~~v~~-------~~l~eC~~~f~~~e~L~g~d~W~Cp-- 288 (415)
T COG5533 220 NKSLVAKTFFGQDKSRLQCEACNYTSTT--IAMFSTLLVPPYEVVQ-------LGLQECIDRFYEEEKLEGKDAWRCP-- 288 (415)
T ss_pred chHHHHHHHhhhhhhhhhhhhcCCceeE--Eeccceeeeccchhee-------ecHHHHHHHhhhHHhhcCcccccCc--
Confidence 5789999999999999999999999998 4444433 33322211 34889998875 46688897
Q ss_pred CCCCCcc--ceEEEEccCCCCeEEEEEEeecCC-Ccccccccccc---cccceeccccccc-c-CCCCCcEEEEEEEEEe
Q 000306 1510 AGGCEKL--NYIHHILSTPPHVFTTVLGWQNTC-ESFDDITATLA---ALSPEIDISILYR-G-LDPKRRHSLVSVVCYY 1581 (1691)
Q Consensus 1510 c~~C~kk--~~kq~~I~rlP~VLiIhLkr~s~~-~~~~KI~~~v~---sfP~~LDLs~f~~-g-~~~~~~Y~L~AVVvH~ 1581 (1691)
+|+++ .+++..|.++|.+||||++||.-. ....+|..+.- .++.+....+.+. | --+..+|.|+|||||.
T Consensus 289 --kC~~k~ss~K~~~I~~lP~~LII~i~RF~i~V~~~~kiD~p~gw~~~~~~e~~v~~~f~~~~~~~P~~Y~L~gv~Ch~ 366 (415)
T COG5533 289 --KCGRKESSRKRMEILVLPDVLIIHISRFHISVMGRKKIDTPQGWKNTASVEVNVTLLFNNGIGYIPRKYSLLGVVCHN 366 (415)
T ss_pred --hhcccccchheEEEEecCceEEEEeeeeeEEeecccccCCCcchhccCCceecccccccCCCCCCccceeEEEEEeec
Confidence 49888 457899999999999999988621 11222221111 1111111111111 1 1134699999999999
Q ss_pred C----CeEEEEEEeCCCCcEEEEeCCcceEeCChHHHHhhhhcCCcccEEEEeccC
Q 000306 1582 G----QHYHCFAYSHDQERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQEVVQDYD 1633 (1691)
Q Consensus 1582 G----GHY~AyVR~~~~~~W~~FNDs~Vt~Vsewe~Vls~~~~~~~qPYILFYe~~ 1633 (1691)
| |||+++|+ .++.|+.|||+.|+.++---+ ..+-.+|||||+|.
T Consensus 367 G~L~gGHY~s~v~--~~~~W~~~dDs~vr~~~~~t~------~~~pSsYilFY~r~ 414 (415)
T COG5533 367 GTLNGGHYFSEVK--RSGTWNVYDDSQVRKGSRTTS------GSHPSSYILFYTRS 414 (415)
T ss_pred ceecCceeEEeee--ecCceEEechhheeeccceec------ccCCcceEEEEEec
Confidence 9 99999999 779999999999999873111 11224499999974
No 17
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.5e-36 Score=343.34 Aligned_cols=210 Identities=24% Similarity=0.403 Sum_probs=166.3
Q ss_pred cccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCccCCcHHHHHHHHHHHHHhhcCCCCCCcccCcHHHHHHHhh
Q 000306 1302 GLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRIALSN 1381 (1691)
Q Consensus 1302 GL~NlG~~NTCYmNSVLQ~L~hip~FR~~ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~VsP~~L~~aL~~ 1381 (1691)
||.|+| |||||||+||+|+|+|+||++++...
T Consensus 1 Gl~N~g--~tCy~ns~lQ~L~~~~~f~~~~~~~~---------------------------------------------- 32 (240)
T cd02662 1 GLVNLG--NTCFMNSVLQALASLPSLIEYLEEFL---------------------------------------------- 32 (240)
T ss_pred CCcCCC--CccHHHHHHHHHHCCHHHHHHHHHHH----------------------------------------------
Confidence 899999 79999999999999999999886521
Q ss_pred hCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEeccCCCcc
Q 000306 1382 LYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGLE 1461 (1691)
Q Consensus 1382 ~~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~~s~~~~~~~SiI~~LF~G~l~s~i~C~~Cg~~ 1461 (1691)
.||||||||..||+.|+. .+.++|.|.+.+.++|..|+..
T Consensus 33 -----------~QqDa~EFl~~ll~~l~~-----------------------------~i~~~F~g~~~~~i~C~~C~~~ 72 (240)
T cd02662 33 -----------EQQDAHELFQVLLETLEQ-----------------------------LLKFPFDGLLASRIVCLQCGES 72 (240)
T ss_pred -----------hhcCHHHHHHHHHHHHHH-----------------------------hccCccccEEEEEEEeCCCCCc
Confidence 899999999999999993 2568999999999999999988
Q ss_pred cccccccceeee-cchhhhhhhHhhcccCCHHHHHHHHhcccc---cccCCCCCCCCccceEEEEccCCCCeEEEEEEee
Q 000306 1462 SRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMNHQ---LACDPGAGGCEKLNYIHHILSTPPHVFTTVLGWQ 1537 (1691)
Q Consensus 1462 S~~~~~~sf~~l-I~~~~l~~~k~~~~~~SL~dlLk~~~~ee~---~~Cd~~c~~C~kk~~kq~~I~rlP~VLiIhLkr~ 1537 (1691)
+.. .++.|..+ ++..... .....+++++|+.|+.++. +.|+ .| +..|.++|+||+|||+||
T Consensus 73 s~~-~~e~f~~LsL~ip~~~----~~~~~sl~~~L~~~~~~E~l~~~~C~----~C------~~~i~~lP~vLii~LkRF 137 (240)
T cd02662 73 SKV-RYESFTMLSLPVPNQS----SGSGTTLEHCLDDFLSTEIIDDYKCD----RC------QTVIVRLPQILCIHLSRS 137 (240)
T ss_pred cCc-ceeeeeeeEecccccC----CCCCCCHHHHHHHhcCcccccCcCCC----CC------eEEeecCCcEEEEEEEEE
Confidence 653 13445433 2221110 0123689999999987664 4565 57 678999999999999988
Q ss_pred cCCC--cccccccccccccceeccccccccCCCCCcEEEEEEEEEeC----CeEEEEEEeC-------------------
Q 000306 1538 NTCE--SFDDITATLAALSPEIDISILYRGLDPKRRHSLVSVVCYYG----QHYHCFAYSH------------------- 1592 (1691)
Q Consensus 1538 s~~~--~~~KI~~~v~sfP~~LDLs~f~~g~~~~~~Y~L~AVVvH~G----GHY~AyVR~~------------------- 1592 (1691)
.... ...|+...+. ||..| +...|+|+|||+|.| |||+||+|.+
T Consensus 138 ~~~~~~~~~K~~~~v~-fp~~l----------~~~~Y~L~avi~H~G~~~~GHY~~~~k~~~~~~~~~~~~~~~~~~~~~ 206 (240)
T cd02662 138 VFDGRGTSTKNSCKVS-FPERL----------PKVLYRLRAVVVHYGSHSSGHYVCYRRKPLFSKDKEPGSFVRMREGPS 206 (240)
T ss_pred EEcCCCceeeeccEEE-CCCcc----------CCceEEEEEEEEEeccCCCceEEEEEeCCCcccccccccccccccccC
Confidence 7533 4467766655 88877 467999999999999 9999999965
Q ss_pred -CCCcEEEEeCCcceEeCChHHHHhhhhcCCcccEEEEec
Q 000306 1593 -DQERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQEVVQD 1631 (1691)
Q Consensus 1593 -~~~~W~~FNDs~Vt~Vsewe~Vls~~~~~~~qPYILFYe 1631 (1691)
..+.||+|||+.|++|+. ++|+. ..+||||||+
T Consensus 207 ~~~~~W~~fnD~~V~~v~~-~~v~~-----~~~aY~LfYe 240 (240)
T cd02662 207 STSHPWWRISDTTVKEVSE-SEVLE-----QKSAYMLFYE 240 (240)
T ss_pred ccCCCEEEEechheEEeCH-HHHhh-----CCCEEEEEeC
Confidence 348999999999999875 55541 3579999996
No 18
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=5.2e-35 Score=333.60 Aligned_cols=252 Identities=22% Similarity=0.412 Sum_probs=194.1
Q ss_pred cccccCCCCCCcccchHHHHHHHhhHHHHHHHhccC-----CCCCCccCCcHHHHHHHHHHHHHhhcCCCCCCcccCcHH
Q 000306 1300 GAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRS-----PSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTS 1374 (1691)
Q Consensus 1300 ~~GL~NlG~~NTCYmNSVLQ~L~hip~FR~~ll~~~-----~~~~~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~VsP~~ 1374 (1691)
++||.|.| |||||||+||+|+++|+|+++++... ..........++.++|+.+|..|+... .....+.|..
T Consensus 1 ~~Gl~N~g--ntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~--~~~~~i~~~~ 76 (269)
T PF00443_consen 1 PVGLQNIG--NTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSN--SSDSSISPSD 76 (269)
T ss_dssp --EESBSS--STHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSC--SSSSEEHCHH
T ss_pred CCCcEeCC--CchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhc--ccccceeecc
Confidence 57999999 89999999999999999999999751 011122233479999999999999651 2467999999
Q ss_pred HHHHHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEe
Q 000306 1375 LRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMN 1454 (1691)
Q Consensus 1375 L~~aL~~~~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~~s~~~~~~~SiI~~LF~G~l~s~i~ 1454 (1691)
|..++....+. |..+.||||+|||..||+.|++++..... .... . .......+++.++|++.+.+.+.
T Consensus 77 ~~~~l~~~~~~---~~~~~qqDa~E~l~~ll~~l~~~~~~~~~---~~~~-~-----~~~~~~~~~~~~~f~~~~~~~~~ 144 (269)
T PF00443_consen 77 FINALSSINPS---FSNGEQQDAHEFLSFLLDWLDEEFNSSFK---RKSW-K-----NTNSSEDSLISDLFGGQFESSIK 144 (269)
T ss_dssp HHHHHHHHCGG---GGSSSTEEHHHHHHHHHHHHHHHHTSCSS---HHHH-H-----HHHCCEESHHHHHH-EEEEEEEE
T ss_pred ccccccccccc---cccccccchhhhhcccccccchhhccccc---cccc-c-----ccccccccccccccccccccccc
Confidence 99999988765 88999999999999999999998766421 0000 0 00112367889999999999999
Q ss_pred ccCCCcccccccccceeeecchhhhhhhHhhcccCCHHHHHHHHhcccccccCCCCCCCCccceEEEEccCCCCeEEEEE
Q 000306 1455 CYSCGLESRHLKYTSFFHNINASALRTMKVMCAESSLDELLNLVEMNHQLACDPGAGGCEKLNYIHHILSTPPHVFTTVL 1534 (1691)
Q Consensus 1455 C~~Cg~~S~~~~~~sf~~lI~~~~l~~~k~~~~~~SL~dlLk~~~~ee~~~Cd~~c~~C~kk~~kq~~I~rlP~VLiIhL 1534 (1691)
|..|+.. +..|.++|++|+|+|
T Consensus 145 c~~c~~~----------------------------------------------------------~~~~~~~P~~L~i~l 166 (269)
T PF00443_consen 145 CSSCKNS----------------------------------------------------------QSSISSLPPILIIQL 166 (269)
T ss_dssp ETTTTCE----------------------------------------------------------EEEEEEBBSEEEEEE
T ss_pred ccccccc----------------------------------------------------------ccccccccceeeecc
Confidence 9999765 567889999999999
Q ss_pred Eee--c-CCCccccccccccccc-ceeccccccccCC----CCCcEEEEEEEEEeC----CeEEEEEEeCCCCcEEEEeC
Q 000306 1535 GWQ--N-TCESFDDITATLAALS-PEIDISILYRGLD----PKRRHSLVSVVCYYG----QHYHCFAYSHDQERWIMYDD 1602 (1691)
Q Consensus 1535 kr~--s-~~~~~~KI~~~v~sfP-~~LDLs~f~~g~~----~~~~Y~L~AVVvH~G----GHY~AyVR~~~~~~W~~FND 1602 (1691)
+|+ . ......|+...+. || ..|||++++.... ....|+|+|||+|.| |||+||+|+...++|+.|||
T Consensus 167 ~R~~~~~~~~~~~K~~~~v~-~~~~~l~l~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~a~v~~~~~~~W~~~dD 245 (269)
T PF00443_consen 167 KRFEFDQETGRSKKINNPVE-FPLEELDLSPYLEKNNSECQSNVKYRLVAVIVHYGSADSGHYVAYVRDSDDGKWYKFDD 245 (269)
T ss_dssp E-EEEESTSSEEEE--CEEB---SSEEEGGGGBSSCCCTHTSSSEEEEEEEEEEESSTTSEEEEEEEEETTTTEEEEEET
T ss_pred ccceeccccccccccccccc-cCchhhhhhhhhccccccccccceeeehhhhccccccccceEEEeeccccCCeEEEeeC
Confidence 766 2 2233567777765 99 6999998876433 257999999999999 99999999876677999999
Q ss_pred CcceEeCChHHHHhhhhcCCcccEEEEe
Q 000306 1603 KTVKVVGSWSDVLSMCERGHLQPQEVVQ 1630 (1691)
Q Consensus 1603 s~Vt~Vsewe~Vls~~~~~~~qPYILFY 1630 (1691)
+.|+.++ +++|...+ ..+||||||
T Consensus 246 ~~v~~~~-~~~v~~~~---~~~~yll~Y 269 (269)
T PF00443_consen 246 SRVTEVS-WEEVIKSS---NSTAYLLFY 269 (269)
T ss_dssp TEEEEES-HHHHCCGG---STCEEEEEE
T ss_pred CceEECC-HHHHhhcc---CCceEEEeC
Confidence 9999986 47887655 568999999
No 19
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.1e-35 Score=348.90 Aligned_cols=284 Identities=18% Similarity=0.181 Sum_probs=197.4
Q ss_pred cccccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCC-----C-----c--c--------CCcHHHHHHHHHHHHHh
Q 000306 1300 GAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEH-----I-----H--V--------GEPCVVCALYEIFTALS 1359 (1691)
Q Consensus 1300 ~~GL~NlG~~NTCYmNSVLQ~L~hip~FR~~ll~~~~~~~-----~-----~--~--------~~~cv~~aL~~LF~~L~ 1359 (1691)
|+||.|+| |||||||+||+|+++|+||++++....... . . . ...+++++|+.||..|+
T Consensus 1 PvGL~NlG--NTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~ 78 (343)
T cd02666 1 PAGLDNIG--NTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLI 78 (343)
T ss_pred CCCcccCC--ceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHH
Confidence 68999999 799999999999999999999998642100 0 0 0 11268999999999999
Q ss_pred hcCCCCCCcccCcHHHHHHHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCc
Q 000306 1360 IASTDTRKEAVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSAC 1439 (1691)
Q Consensus 1360 ~ss~~~~~~~VsP~~L~~aL~~~~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~~s~~~~~~~S 1439 (1691)
.+ ....+.|..++..+. | .||||+||+..||+.||..+......... +.. .......+
T Consensus 79 ~s----~~~~v~P~~~l~~l~--------~---~QQDa~Ef~~~lld~Le~~lk~~~~~~~~-~~~------~~~~~~~~ 136 (343)
T cd02666 79 HS----NTRSVTPSKELAYLA--------L---RQQDVTECIDNVLFQLEVALEPISNAFAG-PDT------EDDKEQSD 136 (343)
T ss_pred hC----CCCccCcHHHHHhcc--------c---cccchHHHHHHHHHHHHHHhcCccccccC-ccc------ccccchhh
Confidence 65 457899999876543 2 89999999999999999998765331110 000 01112368
Q ss_pred cccccccceEEEEEeccCCC---cccccccccceeee-cchhhhh-hhHhhcccCCHHHHHHHHhcccccccCCCCCCCC
Q 000306 1440 IVHSLFGMDIFERMNCYSCG---LESRHLKYTSFFHN-INASALR-TMKVMCAESSLDELLNLVEMNHQLACDPGAGGCE 1514 (1691)
Q Consensus 1440 iI~~LF~G~l~s~i~C~~Cg---~~S~~~~~~sf~~l-I~~~~l~-~~k~~~~~~SL~dlLk~~~~ee~~~Cd~~c~~C~ 1514 (1691)
+|+++|+|++.+.++|..|+ ..+.+ .+.|+.+ ++..... .........+|.++|+.|+..+.
T Consensus 137 ~I~~lF~G~~~~~i~c~~~~~~~~~s~~--~E~F~~L~l~I~~~~~~~~~~~~~~~L~d~L~~~~~~e~----------- 203 (343)
T cd02666 137 LIKRLFSGKTKQQLVPESMGNQPSVRTK--TERFLSLLVDVGKKGREIVVLLEPKDLYDALDRYFDYDS----------- 203 (343)
T ss_pred hhhHhceeeEEEEEEecccCCCCCCccc--cceeEEEEEecCcccccccccCCCCCHHHHHHHhcChhh-----------
Confidence 99999999999999999997 44444 5566655 3321100 00000123689999999876444
Q ss_pred ccceEEEEccCCCCeEEEEEEeecCCCcccccccccccccceecccccccc-----------------------------
Q 000306 1515 KLNYIHHILSTPPHVFTTVLGWQNTCESFDDITATLAALSPEIDISILYRG----------------------------- 1565 (1691)
Q Consensus 1515 kk~~kq~~I~rlP~VLiIhLkr~s~~~~~~KI~~~v~sfP~~LDLs~f~~g----------------------------- 1565 (1691)
|.++|+||.|||+.....-....++... .+|..+|..++..+
T Consensus 204 --------~~~~P~vl~~qlq~~~~~~~~~~~~dry-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 274 (343)
T cd02666 204 --------LTKLPQRSQVQAQLAQPLQRELISMDRY-ELPSSIDDIDELIREAIQSESSLVRQAQNELAELKHEIEKQFD 274 (343)
T ss_pred --------hccCCHHHHHHHhhcccccchheeeccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8999999999987222111112222222 24443333322210
Q ss_pred CCCCCcEEEEEEEEEeC----CeEEEEEEeCCCCcEEEEeCCcceEeCChHHHHhhhhcCCcccEEEEe
Q 000306 1566 LDPKRRHSLVSVVCYYG----QHYHCFAYSHDQERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQEVVQ 1630 (1691)
Q Consensus 1566 ~~~~~~Y~L~AVVvH~G----GHY~AyVR~~~~~~W~~FNDs~Vt~Vsewe~Vls~~~~~~~qPYILFY 1630 (1691)
......|+|+|||+|.| |||++|+|+..++.||.|||..|+.|... .|+..-.++..+||+|||
T Consensus 275 ~~~~~~Y~L~avv~H~G~~~~GHY~~~~~~~~~~~W~~~dD~~V~~v~~~-ev~~~~~~~~~~pY~l~Y 342 (343)
T cd02666 275 DLKSYGYRLHAVFIHRGEASSGHYWVYIKDFEENVWRKYNDETVTVVPAS-EVFLFTLGNTATPYFLVY 342 (343)
T ss_pred ccCCCceEEEEEEEeecCCCCCeEEEEEEECCCCeEEEEECCeeEEecHH-HHhhcccCCCCCCEEEEe
Confidence 01356899999999999 99999999877799999999999999874 455444456789999999
No 20
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-34 Score=360.14 Aligned_cols=319 Identities=19% Similarity=0.288 Sum_probs=226.3
Q ss_pred CCCcccccccccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCC----CccCCcHHHHHHHHHHHHHhhcCCCCCCc
Q 000306 1293 VNGIDVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEH----IHVGEPCVVCALYEIFTALSIASTDTRKE 1368 (1691)
Q Consensus 1293 ~~gs~~~~~GL~NlG~~NTCYmNSVLQ~L~hip~FR~~ll~~~~~~~----~~~~~~cv~~aL~~LF~~L~~ss~~~~~~ 1368 (1691)
..-.....+||.|+| ||||||+|||||+.|+.||..++...+... .......+..++..++..++... ...
T Consensus 294 ~~~~~~~~~GL~NlG--ntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~---~~~ 368 (653)
T KOG1868|consen 294 ASTDVFGCPGLRNLG--NTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGH---GQF 368 (653)
T ss_pred ccccccCCceeccCC--cchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCC---Cce
Confidence 333456778999999 899999999999999999988887643222 12223356667777777776442 567
Q ss_pred ccCcHHHHHHHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCC----CCCcccc----ccc-----CCCCccC
Q 000306 1369 AVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNV----SDTESVE----SNC-----MGSWDCT 1435 (1691)
Q Consensus 1369 ~VsP~~L~~aL~~~~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~----s~~es~e----s~~-----~~s~~~~ 1435 (1691)
.+.|..|+..+.++.+. |.++.|||||||+.++|+.||+++...... +...+.. ... ...|.-.
T Consensus 369 s~~P~~f~~~~~~y~~~---~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~ 445 (653)
T KOG1868|consen 369 SVLPRRFIRVLKRYSPN---FSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRY 445 (653)
T ss_pred ecCcHHHHHHHhhcccc---cccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhh
Confidence 89999999999998877 888889999999999999999999775321 1110100 000 0012111
Q ss_pred --CCCccccccccceEEEEEeccCCCcccccccccceeee-cchhhhhhhHhhcccCCHHHHHHHHhc------cccccc
Q 000306 1436 --NSACIVHSLFGMDIFERMNCYSCGLESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEM------NHQLAC 1506 (1691)
Q Consensus 1436 --~~~SiI~~LF~G~l~s~i~C~~Cg~~S~~~~~~sf~~l-I~~~~l~~~k~~~~~~SL~dlLk~~~~------ee~~~C 1506 (1691)
...+.|.++|.|++.+.++|..||+.|.+ |.+|..+ ++... ........++.+|++.|+. ++.|.|
T Consensus 446 ~~~~d~~i~~lf~gQ~ks~Lkc~~cg~~s~t--~~~f~~lslpIp~---~~~~~~~~~L~~C~~~ft~~ekle~~~~w~C 520 (653)
T KOG1868|consen 446 LEEEDSKIGDLFVGQLKSYLKCQACGYTSTT--FETFTDLSLPIPK---KGFAGGKVSLEDCLSLFTKEEKLEGDEAWLC 520 (653)
T ss_pred ccccchHHHHHHHHHHHhheehhhcCCccee--eecceeeEEeccc---ccccccccchHhhhccccchhhcccccccCC
Confidence 13455899999999999999999999988 5566544 23221 1122224679999998874 456777
Q ss_pred CCCCCCCCccc--e--EEEEccCCCCeEEEEEEeecCCCcccccccccccccce-eccccccc-cCCCCCcEEEEEEEEE
Q 000306 1507 DPGAGGCEKLN--Y--IHHILSTPPHVFTTVLGWQNTCESFDDITATLAALSPE-IDISILYR-GLDPKRRHSLVSVVCY 1580 (1691)
Q Consensus 1507 d~~c~~C~kk~--~--kq~~I~rlP~VLiIhLkr~s~~~~~~KI~~~v~sfP~~-LDLs~f~~-g~~~~~~Y~L~AVVvH 1580 (1691)
+ .|+++. + ++..|.++|+||+|||+||...........+.+.||.. .|+.++.. .......|+|+|||+|
T Consensus 521 p----~c~~~~~~~~lK~~~i~~lp~iLiihL~Rf~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H 596 (653)
T KOG1868|consen 521 P----RCKHKESSKTLKKLTILRLPKILIIHLKRFSSDGNSFNKLSTGVDFPLREADLSPRFAEKGNNPKSYRLYAVVNH 596 (653)
T ss_pred c----cccCcccccccceeeeecCCHHHHHHHHHhccCcccccccceeeccchHhhhhchhccccCCCccceeeEEEEec
Confidence 6 588773 2 67799999999999999988765322333333446654 55555332 2333456999999999
Q ss_pred eC----CeEEEEEEeCCCCcEEEEeCCcceEeCChHHHHhhhhcCCcccEEEEeccCCC
Q 000306 1581 YG----QHYHCFAYSHDQERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQEVVQDYDEM 1635 (1691)
Q Consensus 1581 ~G----GHY~AyVR~~~~~~W~~FNDs~Vt~Vsewe~Vls~~~~~~~qPYILFYe~~e~ 1635 (1691)
.| |||||||+....+.|+.|||+.|+.+.+ ..|. ...+|||||++.++
T Consensus 597 ~Gtl~sGHYta~~~~~~~~~W~~fdDs~Vs~~~~-~~~~------~s~aYIlFY~~~~~ 648 (653)
T KOG1868|consen 597 SGTLNSGHYTAYVYKNEKQRWFTFDDSEVSPISE-TDVG------SSSAYILFYERLGI 648 (653)
T ss_pred cCcccCCceEEEEeecCCCceEEecCeeeecccc-cccc------CCCceEEEeecCCc
Confidence 99 9999999976679999999999997664 2232 34579999998764
No 21
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.6e-33 Score=314.32 Aligned_cols=191 Identities=23% Similarity=0.386 Sum_probs=147.3
Q ss_pred ccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEeccCCCcccccccccceee
Q 000306 1393 QMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGLESRHLKYTSFFH 1472 (1691)
Q Consensus 1393 ~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~~s~~~~~~~SiI~~LF~G~l~s~i~C~~Cg~~S~~~~~~sf~~ 1472 (1691)
.||||+||+.+||+.|+. ++.++|+|.+.++++|..|+..+.. .+.|..
T Consensus 21 ~QqDa~Ef~~~ll~~l~~-----------------------------~i~~~F~~~~~~~~~C~~C~~~~~~--~e~~~~ 69 (230)
T cd02674 21 DQQDAQEFLLFLLDGLHS-----------------------------IIVDLFQGQLKSRLTCLTCGKTSTT--FEPFTY 69 (230)
T ss_pred hhhhHHHHHHHHHHHHhh-----------------------------hHHheeCCEEeCcEEcCCCcCCcce--ecceeE
Confidence 799999999999999991 3678999999999999999988875 334443
Q ss_pred e---cchhhhhhhHhhcccCCHHHHHHHHhccc------ccccCCCCCCCCccc--eEEEEccCCCCeEEEEEEeecCCC
Q 000306 1473 N---INASALRTMKVMCAESSLDELLNLVEMNH------QLACDPGAGGCEKLN--YIHHILSTPPHVFTTVLGWQNTCE 1541 (1691)
Q Consensus 1473 l---I~~~~l~~~k~~~~~~SL~dlLk~~~~ee------~~~Cd~~c~~C~kk~--~kq~~I~rlP~VLiIhLkr~s~~~ 1541 (1691)
+ ++.... ..+..+|.++|+.++..+ .+.|+ +|++.. .++..|.++|++|+|||+|+....
T Consensus 70 l~l~ip~~~~-----~~~~~sl~~~L~~~~~~e~~~~~~~~~C~----~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~ 140 (230)
T cd02674 70 LSLPIPSGSG-----DAPKVTLEDCLRLFTKEETLDGDNAWKCP----KCKKKRKATKKLTISRLPKVLIIHLKRFSFSR 140 (230)
T ss_pred EEEecccccC-----CCCCCCHHHHHHHhcCccccCCCCceeCC----CCCCccceEEEEEEecCChhhEeEhhheecCC
Confidence 3 222110 023479999999877544 45665 587764 457789999999999998876643
Q ss_pred -cccccccccccccc-eeccccccc--cCCCCCcEEEEEEEEEeC----CeEEEEEEeCCCCcEEEEeCCcceEeCChHH
Q 000306 1542 -SFDDITATLAALSP-EIDISILYR--GLDPKRRHSLVSVVCYYG----QHYHCFAYSHDQERWIMYDDKTVKVVGSWSD 1613 (1691)
Q Consensus 1542 -~~~KI~~~v~sfP~-~LDLs~f~~--g~~~~~~Y~L~AVVvH~G----GHY~AyVR~~~~~~W~~FNDs~Vt~Vsewe~ 1613 (1691)
...|+...+. ||. .||+++|+. ......+|+|+|||+|.| |||+||+|...+++|+.|||+.|+.|+.++
T Consensus 141 ~~~~K~~~~v~-~~~~~l~l~~~~~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~~~~~~~~~W~~fnD~~V~~i~~~~- 218 (230)
T cd02674 141 GSTRKLTTPVT-FPLNDLDLTPYVDTRSFTGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESS- 218 (230)
T ss_pred CCcccCCceEe-ccccccccccccCcccCCCCceEEEEEEEEeeCCCCCcEEEEEEECCCCCceEEEcCCeEEEcCHHH-
Confidence 3456666655 885 589988753 334567899999999999 999999996555999999999999998654
Q ss_pred HHhhhhcCCcccEEEEec
Q 000306 1614 VLSMCERGHLQPQEVVQD 1631 (1691)
Q Consensus 1614 Vls~~~~~~~qPYILFYe 1631 (1691)
+ ...+||||||+
T Consensus 219 ~------~~~~~YlL~Y~ 230 (230)
T cd02674 219 V------VSSSAYILFYE 230 (230)
T ss_pred c------cCCCceEEEeC
Confidence 3 35789999996
No 22
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.7e-32 Score=329.32 Aligned_cols=232 Identities=13% Similarity=0.228 Sum_probs=174.7
Q ss_pred ccccccccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCC--CccCCcHHHHHHHHHHHHHhhcCCCCC------Cc
Q 000306 1297 DVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEH--IHVGEPCVVCALYEIFTALSIASTDTR------KE 1368 (1691)
Q Consensus 1297 ~~~~~GL~NlG~~NTCYmNSVLQ~L~hip~FR~~ll~~~~~~~--~~~~~~cv~~aL~~LF~~L~~ss~~~~------~~ 1368 (1691)
..+.+||+|+| |+||||||||+|+++|.|...++....... ......++.|+|.+|...|........ ..
T Consensus 304 gpgytGl~NlG--NSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~qn 381 (763)
T KOG0944|consen 304 GPGYTGLINLG--NSCYLNSVMQSLFSIPSFQRRYLEQERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMDPSNQN 381 (763)
T ss_pred CCCccceeecC--cchhHHHHHHHheecccHHHhhccccceeecCCCCcchhHHHHHHHHHHHhhcCcccCccCCccccC
Confidence 45678999999 899999999999999999988887632222 122345899999999999986643211 36
Q ss_pred ccCcHHHHHHHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccce
Q 000306 1369 AVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMD 1448 (1691)
Q Consensus 1369 ~VsP~~L~~aL~~~~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~~s~~~~~~~SiI~~LF~G~ 1448 (1691)
.|+|..|+..+++-+|. |...+||||+|||.+||+.|.+..... ..-++++|...
T Consensus 382 gIsP~mFK~~igknHpe---Fst~~QQDA~EFllfLl~ki~~n~rs~----------------------~~nptd~frF~ 436 (763)
T KOG0944|consen 382 GISPLMFKALIGKNHPE---FSTNRQQDAQEFLLFLLEKIRENSRSS----------------------LPNPTDLFRFE 436 (763)
T ss_pred CcCHHHHHHHHcCCCcc---ccchhhhhHHHHHHHHHHHHhhccccc----------------------CCCHHHHHHhh
Confidence 89999999999998888 999999999999999999999843221 13478999999
Q ss_pred EEEEEeccCCCcccccccccceeeecchhhhhhhHhhcccCCHHHHHHHHhcc--cccccCCCCCCCCccc--eEEEEcc
Q 000306 1449 IFERMNCYSCGLESRHLKYTSFFHNINASALRTMKVMCAESSLDELLNLVEMN--HQLACDPGAGGCEKLN--YIHHILS 1524 (1691)
Q Consensus 1449 l~s~i~C~~Cg~~S~~~~~~sf~~lI~~~~l~~~k~~~~~~SL~dlLk~~~~e--e~~~Cd~~c~~C~kk~--~kq~~I~ 1524 (1691)
+..++.|..|++++++. ...+++.++..-.. .......+..||+.|+.+ +.++|. .|+.+. .+...+.
T Consensus 437 ve~Rv~C~~c~kVrYs~-~~~~~i~lpv~~~~---~v~~~v~~~~cleaff~pq~~df~s~----ac~~K~~a~kt~~~k 508 (763)
T KOG0944|consen 437 VEDRVSCLGCRKVRYSY-ESEYLIQLPVPMTN---EVREKVPISACLEAFFEPQVDDFWST----ACGEKKGATKTTRFK 508 (763)
T ss_pred hhhhhhhhccccccccc-hhheeeEeeccccc---cccccCCHHHHHHHhcCCcchhhhhH----hhcCccccccccccc
Confidence 99999999999998764 34445455543211 123457899999999987 245553 588774 4567899
Q ss_pred CCCCeEEEEEEeecCCCcccccccccccccceecccccc
Q 000306 1525 TPPHVFTTVLGWQNTCESFDDITATLAALSPEIDISILY 1563 (1691)
Q Consensus 1525 rlP~VLiIhLkr~s~~~~~~KI~~~v~sfP~~LDLs~f~ 1563 (1691)
++|++||||..+|.......|..+.-..+|..||++.|.
T Consensus 509 sfP~yLiiqv~rf~~~dw~pkKld~~iempe~ldls~~r 547 (763)
T KOG0944|consen 509 SFPDYLIIQVGRFTLQDWVPKKLDVSIEMPEELDLSSYR 547 (763)
T ss_pred cCCceEEEEeeEEEecCceeeeeccceecchhhchhhhh
Confidence 999999999988876554434333333488888887553
No 23
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=3.4e-31 Score=298.65 Aligned_cols=200 Identities=18% Similarity=0.190 Sum_probs=145.8
Q ss_pred ccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEeccCCCcccccccccceee
Q 000306 1393 QMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGLESRHLKYTSFFH 1472 (1691)
Q Consensus 1393 ~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~~s~~~~~~~SiI~~LF~G~l~s~i~C~~Cg~~S~~~~~~sf~~ 1472 (1691)
.||||+||+..||+.|++.+...... . . ......++|.++|+|++.+.+.| |+..+.+ .++|+.
T Consensus 21 ~QQDa~Ef~~~Lld~Le~~l~~~~~~-~-~----------~~~~~~~~i~~lF~G~~~~~~~~--~~~~s~~--~E~F~~ 84 (228)
T cd02665 21 QQQDVSEFTHLLLDWLEDAFQAAAEA-I-S----------PGEKSKNPMVQLFYGTFLTEGVL--EGKPFCN--CETFGQ 84 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccc-c-c----------ccccccchHhhceEEEEEEEEEE--CCCcccc--cCccEE
Confidence 68999999999999999998653210 0 0 01123678999999999987777 6666655 456664
Q ss_pred e-cchhhhhhhHhhcccCCHHHHHHHHhcccccccCCCCCCCCccceEEEEccCCCCeEEEEEEeecCCC-ccccccccc
Q 000306 1473 N-INASALRTMKVMCAESSLDELLNLVEMNHQLACDPGAGGCEKLNYIHHILSTPPHVFTTVLGWQNTCE-SFDDITATL 1550 (1691)
Q Consensus 1473 l-I~~~~l~~~k~~~~~~SL~dlLk~~~~ee~~~Cd~~c~~C~kk~~kq~~I~rlP~VLiIhLkr~s~~~-~~~KI~~~v 1550 (1691)
+ ++.. +..+|.++|+.+..++....+. +.. ..+..++..|.++|+||+|||+||.... ...|+.+.+
T Consensus 85 L~l~i~---------~~~~L~e~L~~~~~ee~l~~~~-~~~-~~~~~~~~~i~~lP~vL~i~LkRF~~~~~~~~Ki~~~v 153 (228)
T cd02665 85 YPLQVN---------GYGNLHECLEAAMFEGEVELLP-SDH-SVKSGQERWFTELPPVLTFELSRFEFNQGRPEKIHDKL 153 (228)
T ss_pred EEEEEC---------CCCCHHHHHHHhhhhccccccc-ccc-hhhhhhhhhhhhCChhhEEEeEeeEEcCCccEECCEEE
Confidence 4 2221 2268999999987665554331 111 1224456789999999999999987643 456777766
Q ss_pred ccccceeccccccccCCCCCcEEEEEEEEEeC----CeEEEEEEeCCCCcEEEEeCCcceEeCChHHHHhhh-hcC-Ccc
Q 000306 1551 AALSPEIDISILYRGLDPKRRHSLVSVVCYYG----QHYHCFAYSHDQERWIMYDDKTVKVVGSWSDVLSMC-ERG-HLQ 1624 (1691)
Q Consensus 1551 ~sfP~~LDLs~f~~g~~~~~~Y~L~AVVvH~G----GHY~AyVR~~~~~~W~~FNDs~Vt~Vsewe~Vls~~-~~~-~~q 1624 (1691)
. ||..| ....|+|+|||+|.| |||+||+|...+++||.|||+.|++++. +.|...+ |.+ ..+
T Consensus 154 ~-FP~~l----------~~~~Y~L~aVi~H~G~~~~GHY~~~i~~~~~~~W~~fdD~~V~~~~~-~~v~~~~fGg~~~~~ 221 (228)
T cd02665 154 E-FPQII----------QQVPYELHAVLVHEGQANAGHYWAYIYKQSRQEWEKYNDISVTESSW-EEVERDSFGGGRNPS 221 (228)
T ss_pred E-eeCcc----------CCceeEEEEEEEecCCCCCCEEEEEEEcCCCCEEEEEECCeeEEcCH-HHHhhhccCCCCCCc
Confidence 5 88876 245899999999999 9999999976689999999999999864 6676543 433 457
Q ss_pred cEEEEec
Q 000306 1625 PQEVVQD 1631 (1691)
Q Consensus 1625 PYILFYe 1631 (1691)
||||||-
T Consensus 222 AYiLfYv 228 (228)
T cd02665 222 AYCLMYI 228 (228)
T ss_pred eEEEEEC
Confidence 8999993
No 24
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2e-31 Score=328.25 Aligned_cols=309 Identities=25% Similarity=0.355 Sum_probs=228.5
Q ss_pred CcccccccccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCc-cCCcHHHHHHHHHHHHHhhcCCCCCCcccCcH
Q 000306 1295 GIDVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIH-VGEPCVVCALYEIFTALSIASTDTRKEAVAPT 1373 (1691)
Q Consensus 1295 gs~~~~~GL~NlG~~NTCYmNSVLQ~L~hip~FR~~ll~~~~~~~~~-~~~~cv~~aL~~LF~~L~~ss~~~~~~~VsP~ 1373 (1691)
+.....+||.|+| ||||||+|||+|.|.+..+...+...+..... ....|+.|++..+|..++... ....+.|.
T Consensus 156 ~~~~~l~g~~n~g--~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~~~~~~~~l~~~~~~~~~~~~s~~---~~~~~sp~ 230 (492)
T KOG1867|consen 156 TTALGLRGLRNLG--STCFMNVILQSLLHDPLSRSSFLSGIHSKEPSSSGSSCLVCDLDRLFQALYSGH---NRTPYSPF 230 (492)
T ss_pred eeeeccccccccc--HHHHHHHHHHHhhccchhhccchhhhcccCCCCCCCcchhhhhhhhhhHhhcCC---CCCCcChH
Confidence 3456778999999 79999999999999999998888766542222 335699999999999999653 27899999
Q ss_pred HHHHHHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEE
Q 000306 1374 SLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERM 1453 (1691)
Q Consensus 1374 ~L~~aL~~~~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~~s~~~~~~~SiI~~LF~G~l~s~i 1453 (1691)
.+.+.+++..|. |.++.|||||||+..+++.+|.+...... ..-... ... .-.++++..|.|.+.+.+
T Consensus 231 ~~l~~~~k~~~~---~~g~~Qqda~eF~~~~~~~~~~~~~~~~k-----~~~~~~-~~~---~c~~iv~~~F~G~L~~~v 298 (492)
T KOG1867|consen 231 ELLNLVWKHSPN---LAGYEQQDAHEFLIALLDRLHREKDDCGK-----SLIASQ-SNK---QCPCIVHTIFSGTLQSDV 298 (492)
T ss_pred HHHHHHHHhCcc---cccccccchHHHHHHhccccccccccccc-----cccccc-CCc---ccccccceeecceeccce
Confidence 999999998877 88899999999999999999998711100 000000 000 127899999999999999
Q ss_pred eccCCCcccccccccceeee---cchhhhhhhHhhcccCCHHHHHHHHhcccccccC--CCCCCCCccc--eEEEEccCC
Q 000306 1454 NCYSCGLESRHLKYTSFFHN---INASALRTMKVMCAESSLDELLNLVEMNHQLACD--PGAGGCEKLN--YIHHILSTP 1526 (1691)
Q Consensus 1454 ~C~~Cg~~S~~~~~~sf~~l---I~~~~l~~~k~~~~~~SL~dlLk~~~~ee~~~Cd--~~c~~C~kk~--~kq~~I~rl 1526 (1691)
+|..|+..|.. +++|+.+ |+..-...... .+..++.+|+..+...+...+. ..|..|+.++ .++..|.++
T Consensus 299 ~c~~c~~~S~~--~dpf~disL~i~~~~~~~~~~-~~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~kql~~~~l 375 (492)
T KOG1867|consen 299 TCQTCGSKSTT--YDPFMDISLDIPDQFTSSSVR-SPELTLLDCLDRFTRSEQLGKDSKYKCSSCKSKQESTKQLTIRKL 375 (492)
T ss_pred eehhhcceeee--ccCccceeeecchhccCcccc-cchhhhhhhhhhhhhhhhcCcccccccCCcccccccccccccccC
Confidence 99999999955 5666644 33211110000 0014577777766533322111 2345688874 468999999
Q ss_pred CCeEEEEEEeecCCCcc--cccccccccccceecccccccc--C----CCCCcEEEEEEEEEeC----CeEEEEEEeCCC
Q 000306 1527 PHVFTTVLGWQNTCESF--DDITATLAALSPEIDISILYRG--L----DPKRRHSLVSVVCYYG----QHYHCFAYSHDQ 1594 (1691)
Q Consensus 1527 P~VLiIhLkr~s~~~~~--~KI~~~v~sfP~~LDLs~f~~g--~----~~~~~Y~L~AVVvH~G----GHY~AyVR~~~~ 1594 (1691)
|.+|.+||+||...... .|+...+ .||..|+|.+|+.. . .+...|+|+|||+|+| ||||||+| ..
T Consensus 376 P~~l~~~lkRfe~~~~~~~~ki~~~v-~fp~~l~m~p~~~~~~~~~~~~~~~~Y~L~AVV~H~G~~~SGHY~aY~r--~~ 452 (492)
T KOG1867|consen 376 PAVLCLHLKRFEHSATGAREKIDSYV-SFPVLLNMKPYCSSEKLKSQDNPDHLYELRAVVVHHGTVGSGHYVAYRR--QS 452 (492)
T ss_pred CceeeeeeccccccccccccccCccc-ccchhhcCCccccccccccCCCCCceEEEEEEEEeccCCCCCceEEEEE--eC
Confidence 99999999987653322 2566555 59999999999863 1 2357999999999999 99999999 67
Q ss_pred CcEEEEeCCcceEeCChHHHHhhhhcCCcccEEEEeccC
Q 000306 1595 ERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQEVVQDYD 1633 (1691)
Q Consensus 1595 ~~W~~FNDs~Vt~Vsewe~Vls~~~~~~~qPYILFYe~~ 1633 (1691)
+.||+|||+.|+.++. ++|++ .++|+|||.+.
T Consensus 453 ~~~~~~dDs~v~~~s~-~eVl~------~~aylLFY~~~ 484 (492)
T KOG1867|consen 453 GGWFKCDDSTVTKVSE-EEVLS------SQAYLLFYTQE 484 (492)
T ss_pred CCcEEEcCeEEEEeeH-HHhhh------chhhheehhHH
Confidence 8999999999999865 66765 57899999854
No 25
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.8e-32 Score=324.24 Aligned_cols=290 Identities=19% Similarity=0.263 Sum_probs=224.8
Q ss_pred cccccccccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCccCCcHHHHHHHHHHHHHhhcCCCCCCcccCcHHH
Q 000306 1296 IDVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSL 1375 (1691)
Q Consensus 1296 s~~~~~GL~NlG~~NTCYmNSVLQ~L~hip~FR~~ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~VsP~~L 1375 (1691)
..++.+||+|.|+ ||||||.||+||.+..||+.++.+... + ..+...++.+||.+|..|+.. ..+++..+|
T Consensus 189 keTGYVGlrNqGA--TCYmNSLlQslffi~~FRk~Vy~ipTd-~-p~grdSValaLQr~Fynlq~~-----~~PvdTtel 259 (1089)
T COG5077 189 KETGYVGLRNQGA--TCYMNSLLQSLFFIAKFRKDVYGIPTD-H-PRGRDSVALALQRLFYNLQTG-----EEPVDTTEL 259 (1089)
T ss_pred cceeeeeeccCCc--eeeHHHHHHHHHHHHHHHHHhhcCCCC-C-CCccchHHHHHHHHHHHHhcc-----CCCcchHHh
Confidence 4677899999996 999999999999999999999998642 2 234447999999999999964 468999998
Q ss_pred HHHHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEec
Q 000306 1376 RIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNC 1455 (1691)
Q Consensus 1376 ~~aL~~~~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~~s~~~~~~~SiI~~LF~G~l~s~i~C 1455 (1691)
...++ |.+ +...+|||.|||-..|.|.|+..+..... ...++.+|-|.+.+.+.|
T Consensus 260 trsfg--Wds---~dsf~QHDiqEfnrVl~DnLEksmrgt~V--------------------Enaln~ifVgkmksyikC 314 (1089)
T COG5077 260 TRSFG--WDS---DDSFMQHDIQEFNRVLQDNLEKSMRGTVV--------------------ENALNGIFVGKMKSYIKC 314 (1089)
T ss_pred hhhcC--ccc---chHHHHHhHHHHHHHHHHHHHHhhcCChh--------------------hhHHhHHHHHHhhceeeE
Confidence 87776 333 56678999999999999999997654322 456889999999999999
Q ss_pred cCCCcccccccccceeee-cchhhhhhhHhhcccCCHHHHHHHH------hcccccccCCCCCCCCcc-ceEEEEccCCC
Q 000306 1456 YSCGLESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLV------EMNHQLACDPGAGGCEKL-NYIHHILSTPP 1527 (1691)
Q Consensus 1456 ~~Cg~~S~~~~~~sf~~l-I~~~~l~~~k~~~~~~SL~dlLk~~------~~ee~~~Cd~~c~~C~kk-~~kq~~I~rlP 1527 (1691)
-.-.++|.+. +.|+.+ ++.... ..|+|.++.| .+++.|.|+. -|-. +.+-..+.++|
T Consensus 315 vnvnyEsarv--edfwdiqlNvK~~---------knLqeSfr~yIqvE~l~GdN~Y~ae~----~GlqdAkKGViFeSlP 379 (1089)
T COG5077 315 VNVNYESARV--EDFWDIQLNVKGM---------KNLQESFRRYIQVETLDGDNRYNAEK----HGLQDAKKGVIFESLP 379 (1089)
T ss_pred EEechhhhhH--HHHHHHHhcccch---------hhHHHHHHHhhhheeccCCccccccc----ccchhhccceeeccCc
Confidence 9988888773 355533 332222 3455555554 3677788763 2322 55678899999
Q ss_pred CeEEEEEEeecCC---CcccccccccccccceeccccccccC-----CCCCcEEEEEEEEEeC----CeEEEEEEeCCCC
Q 000306 1528 HVFTTVLGWQNTC---ESFDDITATLAALSPEIDISILYRGL-----DPKRRHSLVSVVCYYG----QHYHCFAYSHDQE 1595 (1691)
Q Consensus 1528 ~VLiIhLkr~s~~---~~~~KI~~~v~sfP~~LDLs~f~~g~-----~~~~~Y~L~AVVvH~G----GHY~AyVR~~~~~ 1595 (1691)
+||-|+|+||.+. ....||+.... ||.+||+.||.... ...+.|.|+||++|.| |||+|++|...+|
T Consensus 380 pVlhlqLKRFeyDfe~d~mvKINDryE-FP~eiDl~pfld~da~ksen~d~vY~LygVlVHsGDl~~GHyYallKpe~dg 458 (1089)
T COG5077 380 PVLHLQLKRFEYDFERDMMVKINDRYE-FPLEIDLLPFLDRDADKSENSDAVYVLYGVLVHSGDLHEGHYYALLKPEKDG 458 (1089)
T ss_pred hHHHHHHHHhccccccCceeeeccccc-CcchhccccccCchhhhhcccCcEEEEEEEEEeccccCCceEEEEeccccCC
Confidence 9999999987653 34688998877 99999999998521 2337999999999999 9999999988899
Q ss_pred cEEEEeCCcceEeCChHHHHhhhhcC---------------CcccEEEEeccCCC
Q 000306 1596 RWIMYDDKTVKVVGSWSDVLSMCERG---------------HLQPQEVVQDYDEM 1635 (1691)
Q Consensus 1596 ~W~~FNDs~Vt~Vsewe~Vls~~~~~---------------~~qPYILFYe~~e~ 1635 (1691)
+||+|||+.|+.++.-+.+...+|.. ...+|||.|-|.++
T Consensus 459 ~WykfdDtrVtrat~kevleeNfGgd~~~~~k~r~~~~~kRfmsAYmLvYlRks~ 513 (1089)
T COG5077 459 RWYKFDDTRVTRATEKEVLEENFGGDHPYKDKIRDHSGIKRFMSAYMLVYLRKSM 513 (1089)
T ss_pred CceeecceehhhHHHHHHHHHhcCCCCCCcccccCCchhhhhhhhheeeeehHhH
Confidence 99999999999987744444444421 23359999988765
No 26
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=9.5e-31 Score=299.66 Aligned_cols=208 Identities=15% Similarity=0.176 Sum_probs=144.1
Q ss_pred chhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEeccCCCccccccccc
Q 000306 1389 FQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGLESRHLKYT 1468 (1691)
Q Consensus 1389 F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~~s~~~~~~~SiI~~LF~G~l~s~i~C~~Cg~~S~~~~~~ 1468 (1691)
|.+++||||||||.+|||.||+++........ .. . .. .......++|+|.+.+.++|..|++++.+ ++
T Consensus 28 F~~~~QQDAhEFL~~LLd~l~~~~~~~~~~~~--~~-~------~~-~~~~~~~~~F~~~l~s~i~C~~C~~~s~~--~e 95 (245)
T cd02673 28 FDNDDQQDAHEFLLTLLEAIDDIMQVNRTNVP--PS-N------IE-IKRLNPLEAFKYTIESSYVCIGCSFEENV--SD 95 (245)
T ss_pred cCCCchhhHHHHHHHHHHHHHHHHHhhcccCC--CC-c------cc-ccccCHhHheeeEEEeEEEecCCCCeeee--cc
Confidence 88899999999999999999997643211000 00 0 00 01122458899999999999999999887 44
Q ss_pred ceeee-cchhhhhhhHhhcccCCHHHHHHHHhccc--ccccCCCCCCCCcc-ceEEEEccCCCCeEEEEEEeecCCCccc
Q 000306 1469 SFFHN-INASALRTMKVMCAESSLDELLNLVEMNH--QLACDPGAGGCEKL-NYIHHILSTPPHVFTTVLGWQNTCESFD 1544 (1691)
Q Consensus 1469 sf~~l-I~~~~l~~~k~~~~~~SL~dlLk~~~~ee--~~~Cd~~c~~C~kk-~~kq~~I~rlP~VLiIhLkr~s~~~~~~ 1544 (1691)
.|+.+ ++.... ....+++|+..|...+ .+.|+ .|+.+ +.++..|.++|+||+|||+||.....
T Consensus 96 ~~~~L~L~i~~~-------~~~~le~l~~~~~~~~~~e~~C~----~C~~~~a~k~~~i~~~P~vL~i~lkRf~~~~~-- 162 (245)
T cd02673 96 VGNFLDVSMIDN-------KLDIDELLISNFKTWSPIEKDCS----SCKCESAISSERIMTFPECLSINLKRYKLRIA-- 162 (245)
T ss_pred ccceeccccccC-------CcchHHHHHHHhhcccccCccCC----CCCCccceeechhhhCChhhEEeeEeeeeccc--
Confidence 55543 332110 1245777877766433 45665 57765 34567799999999999999954321
Q ss_pred ccccccccccceeccccccccCCCCCcEEEEEEEEEeC-----CeEEEEEEeCC-CCcEEEEeCCcceEeCChHHHHhhh
Q 000306 1545 DITATLAALSPEIDISILYRGLDPKRRHSLVSVVCYYG-----QHYHCFAYSHD-QERWIMYDDKTVKVVGSWSDVLSMC 1618 (1691)
Q Consensus 1545 KI~~~v~sfP~~LDLs~f~~g~~~~~~Y~L~AVVvH~G-----GHY~AyVR~~~-~~~W~~FNDs~Vt~Vsewe~Vls~~ 1618 (1691)
+...+ ....+++.+|+. ....|+|+|||+|.| ||||||+|... .++||.|||+.|++|++ ++|+..
T Consensus 163 -~~~~~--~~~~~~~~~~~~---~~~~Y~L~~VV~H~G~~~~~GHY~a~vk~~~~~~~Wy~fnD~~V~~v~~-~~v~~~- 234 (245)
T cd02673 163 -TSDYL--KKNEEIMKKYCG---TDAKYSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCSDDEIRPVSK-NDVSTN- 234 (245)
T ss_pred -ccccc--cccccccccccC---CCceEEEEEEEEECCCCCCCceEEEEEEcCCCCCeEEEeeCceeeEcCH-HHHhhc-
Confidence 11111 112456666653 456899999999999 99999999755 68999999999999865 666632
Q ss_pred hcCCcccEEEEec
Q 000306 1619 ERGHLQPQEVVQD 1631 (1691)
Q Consensus 1619 ~~~~~qPYILFYe 1631 (1691)
...+||||||+
T Consensus 235 --~~~~aYiLFY~ 245 (245)
T cd02673 235 --ARSSGYLIFYD 245 (245)
T ss_pred --cCCceEEEEEC
Confidence 23579999996
No 27
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.9e-32 Score=323.74 Aligned_cols=298 Identities=18% Similarity=0.246 Sum_probs=225.4
Q ss_pred CcccccccccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCC--CccCCcHHHHHHHHHHHHHhhcCCCCCCcccCc
Q 000306 1295 GIDVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEH--IHVGEPCVVCALYEIFTALSIASTDTRKEAVAP 1372 (1691)
Q Consensus 1295 gs~~~~~GL~NlG~~NTCYmNSVLQ~L~hip~FR~~ll~~~~~~~--~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~VsP 1372 (1691)
+.....+||+|-| +|||||+++|-|+++|.+|+.++......+ .-..+..+++.||.+|..|..+ +...+-|
T Consensus 90 Rpp~gfVGLKNag--atcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~s~~e~vl~~lQ~iF~hL~~s----~lQyyVP 163 (944)
T KOG1866|consen 90 RPPEGFVGLKNAG--ATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDMSGDEKVLRHLQVIFGHLAAS----QLQYYVP 163 (944)
T ss_pred CCCcceeeecCCC--chHHHhhhhhhhhhcccccchhhhhcccccchhhcchHHHHHHHHHHHHHHHHH----hhhhhcc
Confidence 4556678999999 699999999999999999998877544311 1122334999999999999865 5678999
Q ss_pred HHHHHHHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEE
Q 000306 1373 TSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFER 1452 (1691)
Q Consensus 1373 ~~L~~aL~~~~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~~s~~~~~~~SiI~~LF~G~l~s~ 1452 (1691)
..|.+.++-. + .-....+||||-||+..|||.+.+.++.... +.+....|+|.+..+
T Consensus 164 eg~Wk~Fr~~-~--~pln~reqhDA~eFf~sLld~~De~LKklg~--------------------p~lf~n~f~G~ysdq 220 (944)
T KOG1866|consen 164 EGFWKQFRLW-G--EPLNLREQHDALEFFNSLLDSLDEALKKLGH--------------------PQLFSNTFGGSYSDQ 220 (944)
T ss_pred hhHHHHhhcc-C--CccchHhhhhHHHHHHHHHHHHHHHHHHhCC--------------------cHHHHHHhcCccchh
Confidence 9987776543 2 2356779999999999999999999876532 567889999999999
Q ss_pred EeccCCCcccccccccceeeecchhhhhhhHhhcccCCHHHHHHHHh------cccccccCCCCCCCCccce--EEEEcc
Q 000306 1453 MNCYSCGLESRHLKYTSFFHNINASALRTMKVMCAESSLDELLNLVE------MNHQLACDPGAGGCEKLNY--IHHILS 1524 (1691)
Q Consensus 1453 i~C~~Cg~~S~~~~~~sf~~lI~~~~l~~~k~~~~~~SL~dlLk~~~------~ee~~~Cd~~c~~C~kk~~--kq~~I~ 1524 (1691)
-.|..|.+.-.. .++|. .++.+. .-.+|++.|++|. +.+.|.|+ +|+++.. +++.|.
T Consensus 221 KIC~~CpHRY~~--eE~F~-~l~l~i--------~~~nLeesLeqfv~gevlEG~nAYhCe----KCdeK~~TvkRt~ik 285 (944)
T KOG1866|consen 221 KICQGCPHRYEC--EESFT-TLNLDI--------RHQNLEESLEQFVKGEVLEGANAYHCE----KCDEKVDTVKRTCIK 285 (944)
T ss_pred hhhccCCcccCc--cccce-eeeeec--------ccchHHHHHHHHHHHHHhcCcchhhhh----hhhhhhHhHHHHHHh
Confidence 999999876433 23333 323221 1256777777764 66789998 5988843 588899
Q ss_pred CCCCeEEEEEEeecCC---Ccccccccccccccceeccccccc-c----------C-------CCCCcEEEEEEEEEeC-
Q 000306 1525 TPPHVFTTVLGWQNTC---ESFDDITATLAALSPEIDISILYR-G----------L-------DPKRRHSLVSVVCYYG- 1582 (1691)
Q Consensus 1525 rlP~VLiIhLkr~s~~---~~~~KI~~~v~sfP~~LDLs~f~~-g----------~-------~~~~~Y~L~AVVvH~G- 1582 (1691)
+||.||+|||+||.+. +...|-+..+. ||.+|||.||.- | . ....+|+|+|||+|+|
T Consensus 286 ~LPsvl~IqLkRF~yD~e~~~~iK~n~~fr-FP~~ldMePYtvsg~a~~e~~~~~~g~~~e~s~~t~~YeLvGVlvHSGq 364 (944)
T KOG1866|consen 286 KLPSVLAIQLKRFDYDWERECAIKFNDYFR-FPRELDMEPYTVSGVAKLEGENVESGQQLEQSAGTTKYELVGVLVHSGQ 364 (944)
T ss_pred hCChhheehhhhccchhhhccccccchhcc-cchhhcCCceeehhhhhhccccCCcCcccccccCcceeEEEEEEEeccc
Confidence 9999999999988763 34467777776 999999999962 1 0 1235999999999999
Q ss_pred ---CeEEEEEEe---CCCCcEEEEeCCcceEeCChHHHHhhhhc--------------CCcccEEEEeccCCCCCC
Q 000306 1583 ---QHYHCFAYS---HDQERWIMYDDKTVKVVGSWSDVLSMCER--------------GHLQPQEVVQDYDEMHPF 1638 (1691)
Q Consensus 1583 ---GHY~AyVR~---~~~~~W~~FNDs~Vt~Vsewe~Vls~~~~--------------~~~qPYILFYe~~e~~~~ 1638 (1691)
|||++|+++ ..+++||+|||..|++++ ..++...|-+ +...+|||||++.+-.|.
T Consensus 365 AsaGHYySfIk~rr~~~~~kWykfnD~~Vte~~-~n~me~~cfGGey~q~~~~~~~rrR~WNAYmlFYer~~d~p~ 439 (944)
T KOG1866|consen 365 ASAGHYYSFIKQRRGEDGNKWYKFNDGDVTECK-MNEMENECFGGEYMQMMKRMSYRRRWWNAYMLFYERMDDIPT 439 (944)
T ss_pred ccCcchhhhhhhhccCCCCceEeccCccccccc-hhhHHHHhhcchhhhcccccchHHHhhhhHHHHHHHhcCCCc
Confidence 999999985 346899999999999975 2344444433 345689999998654443
No 28
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=3.9e-30 Score=288.87 Aligned_cols=217 Identities=20% Similarity=0.296 Sum_probs=155.4
Q ss_pred ccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEeccCCCcccccccccceee
Q 000306 1393 QMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGLESRHLKYTSFFH 1472 (1691)
Q Consensus 1393 ~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~~s~~~~~~~SiI~~LF~G~l~s~i~C~~Cg~~S~~~~~~sf~~ 1472 (1691)
.||||+|||..||+.|+.++...... ........+.+.++|+|.+.+.+.|..|+..+.......++
T Consensus 21 ~q~Da~E~l~~ll~~l~~~~~~~~~~------------~~~~~~~~~~i~~~F~~~~~~~~~c~~c~~~~~~~~~~~~l- 87 (255)
T cd02257 21 EQQDAHEFLLFLLDKLHEELKKSSKR------------TSDSSSLKSLIHDLFGGKLESTIVCLECGHESVSTEPELFL- 87 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc------------ccccccCCchhhhhcccEEeeEEECCCCCCCccCcccceeE-
Confidence 79999999999999999988653221 01112235789999999999999999998766543322222
Q ss_pred ecchhhhhhhHhhcccCCHHHHHHHHhcccccccCCCCCCCC----ccceEEEEccCCCCeEEEEEEeecCC--Cccccc
Q 000306 1473 NINASALRTMKVMCAESSLDELLNLVEMNHQLACDPGAGGCE----KLNYIHHILSTPPHVFTTVLGWQNTC--ESFDDI 1546 (1691)
Q Consensus 1473 lI~~~~l~~~k~~~~~~SL~dlLk~~~~ee~~~Cd~~c~~C~----kk~~kq~~I~rlP~VLiIhLkr~s~~--~~~~KI 1546 (1691)
.++..... ....+|.++|+.++..+...- ..|..|+ ....++..|.++|++|+|+|.|+... ....|+
T Consensus 88 ~l~~~~~~-----~~~~~l~~~l~~~~~~e~~~~-~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~k~ 161 (255)
T cd02257 88 SLPLPVKG-----LPQVSLEDCLEKFFKEEILEG-DNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKL 161 (255)
T ss_pred EeeccCCC-----CCCCcHHHHHHHhhhhhccCC-CCcccCCCCcccceeEEEecccCCceeEEEeeceeeccccccccC
Confidence 23322110 023789999999876543321 1234565 23456889999999999999888653 234566
Q ss_pred ccccccccceeccccccc-------cCCCCCcEEEEEEEEEeC-----CeEEEEEEeCCCCcEEEEeCCcceEeCChHHH
Q 000306 1547 TATLAALSPEIDISILYR-------GLDPKRRHSLVSVVCYYG-----QHYHCFAYSHDQERWIMYDDKTVKVVGSWSDV 1614 (1691)
Q Consensus 1547 ~~~v~sfP~~LDLs~f~~-------g~~~~~~Y~L~AVVvH~G-----GHY~AyVR~~~~~~W~~FNDs~Vt~Vsewe~V 1614 (1691)
...+. ||..|++..++. +......|+|+|||+|.| |||+||+|....++||+|||..|++|+.++ +
T Consensus 162 ~~~v~-~~~~l~~~~~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~-~ 239 (255)
T cd02257 162 NTKVS-FPLELDLSPYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEE-V 239 (255)
T ss_pred CCeEe-CCCcccCccccccccccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCCCCCceEEEeccccEEcCHHH-h
Confidence 66654 999999987753 234567999999999998 999999997655999999999999997644 4
Q ss_pred HhhhhcCCcccEEEEec
Q 000306 1615 LSMCERGHLQPQEVVQD 1631 (1691)
Q Consensus 1615 ls~~~~~~~qPYILFYe 1631 (1691)
+.. .....+||+|||+
T Consensus 240 ~~~-~~~~~~~yll~Y~ 255 (255)
T cd02257 240 LEF-GSLSSSAYILFYE 255 (255)
T ss_pred hhc-cCCCCceEEEEEC
Confidence 321 3346789999996
No 29
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.7e-28 Score=282.37 Aligned_cols=204 Identities=18% Similarity=0.306 Sum_probs=157.7
Q ss_pred cccccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCC--CccCCcHHHHHHHHHHHHHhhcCCCCCCcccCcHHHHH
Q 000306 1300 GAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEH--IHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRI 1377 (1691)
Q Consensus 1300 ~~GL~NlG~~NTCYmNSVLQ~L~hip~FR~~ll~~~~~~~--~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~VsP~~L~~ 1377 (1691)
.+||.|+| |+||+||+||+|++...+...+....+... ......|+.|+|.+|...|...........++|..|+.
T Consensus 303 ~~GliNlG--NsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk~ 380 (749)
T COG5207 303 YVGLINLG--NSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECLFCQLMKLLSKMKETPDNEYVNGISPLDFKM 380 (749)
T ss_pred ccceEecC--CeeeHHHHHHHHhccccchhhhhhhccceeeeecCCchhHHHHHHHHHhhccCCCCccccCCcChhhHHH
Confidence 68999999 899999999999999888777765433222 22234589999999999988654333567899999999
Q ss_pred HHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEeccC
Q 000306 1378 ALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYS 1457 (1691)
Q Consensus 1378 aL~~~~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~~s~~~~~~~SiI~~LF~G~l~s~i~C~~ 1457 (1691)
.+++-++. |....||||+|||.+||+.|....... ..+.|+++|...+..++.|..
T Consensus 381 ~igq~h~e---Fg~~~QQDA~EFLlfLL~kirk~~~S~---------------------~~~~It~lf~Fe~e~rlsC~~ 436 (749)
T COG5207 381 LIGQDHPE---FGKFAQQDAHEFLLFLLEKIRKGERSY---------------------LIPPITSLFEFEVERRLSCSG 436 (749)
T ss_pred HHcCCchh---hhhhhhhhHHHHHHHHHHHHhhccchh---------------------cCCCcchhhhhhhcceecccc
Confidence 99988776 999999999999999999999844221 145688999999999999999
Q ss_pred CCccccccccccee-eecchhhhhhhHhhcccCCHHHHHHHHhccc--ccccCCCCCCCCccce--EEEEccCCCCeEEE
Q 000306 1458 CGLESRHLKYTSFF-HNINASALRTMKVMCAESSLDELLNLVEMNH--QLACDPGAGGCEKLNY--IHHILSTPPHVFTT 1532 (1691)
Q Consensus 1458 Cg~~S~~~~~~sf~-~lI~~~~l~~~k~~~~~~SL~dlLk~~~~ee--~~~Cd~~c~~C~kk~~--kq~~I~rlP~VLiI 1532 (1691)
|+.++.. |.+.. ..|... ......++.+++++|+..+ .|.|+ .|+.+.. ++..|+.+|++||+
T Consensus 437 C~~v~yS--ye~~~~i~i~le------~n~E~~di~~~v~a~f~pdtiE~~Ce----nCk~K~~a~~k~~~kslPk~LIl 504 (749)
T COG5207 437 CMDVSYS--YESMLMICIFLE------GNDEPQDIRKSVEAFFLPDTIEWSCE----NCKGKKKASRKPFIKSLPKYLIL 504 (749)
T ss_pred ccccccc--ccceEEEEeecc------cCcchhhHHHHHHheECccceeeehh----hhcCcccccccchhhccCceeEE
Confidence 9999887 33332 224432 1123467889999999888 56786 5887744 46689999999999
Q ss_pred EEEeecCCC
Q 000306 1533 VLGWQNTCE 1541 (1691)
Q Consensus 1533 hLkr~s~~~ 1541 (1691)
+..|+..++
T Consensus 505 q~~R~~lqn 513 (749)
T COG5207 505 QVGRYSLQN 513 (749)
T ss_pred ecceeeccc
Confidence 997765443
No 30
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.3e-28 Score=296.05 Aligned_cols=138 Identities=19% Similarity=0.211 Sum_probs=104.4
Q ss_pred cCCHHHHHHHHh------cccccccCCCCC----------CCCcc---------------ceEEEEccCCCCeEEEEEEe
Q 000306 1488 ESSLDELLNLVE------MNHQLACDPGAG----------GCEKL---------------NYIHHILSTPPHVFTTVLGW 1536 (1691)
Q Consensus 1488 ~~SL~dlLk~~~------~ee~~~Cd~~c~----------~C~kk---------------~~kq~~I~rlP~VLiIhLkr 1536 (1691)
..+++.||..|+ ++++|.|+..|. +|+.. ++++..|..+|+||+|||+|
T Consensus 677 p~Svq~CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVltihlKr 756 (877)
T KOG1873|consen 677 PCSVQRCLKNFTKVEILSGDNKWACENCTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLTIHLKR 756 (877)
T ss_pred CccHHHHHHhhhhhhhcccccchhhhhhhccccccchhhccCCCCcccccccchhhhhhhhheeeecccCCceeeehHhh
Confidence 458999999986 567889985222 22111 12356688999999999998
Q ss_pred ecCC--Ccccccccccccccceeccccccc----cCC--CCCcEEEEEEEEEeC----CeEEEEEEe-------------
Q 000306 1537 QNTC--ESFDDITATLAALSPEIDISILYR----GLD--PKRRHSLVSVVCYYG----QHYHCFAYS------------- 1591 (1691)
Q Consensus 1537 ~s~~--~~~~KI~~~v~sfP~~LDLs~f~~----g~~--~~~~Y~L~AVVvH~G----GHY~AyVR~------------- 1591 (1691)
|... ....+.++.+. |++-+|+.+|+. +++ ....|+|+|||.|.| ||||+|+|.
T Consensus 757 f~q~~~~~~~k~~~h~~-f~E~~dL~~~~~~rc~~l~~~~s~~Yrl~gvvehsgtm~~ghyvayv~~~t~~~~~~~~~~~ 835 (877)
T KOG1873|consen 757 FFQDIRGRLSKLNKHVD-FKEFEDLLDYMDFRCSHLDEPSSFVYRLAGVVEHSGTMSYGHYVAYVRGGTFLDLSAPSNSK 835 (877)
T ss_pred hhhhhhchhhcccccch-HHHHHHHHHHhhhhccccCCcchhhhhhccceeccccccCCcchhhhhccchhhccCccccc
Confidence 7642 22456666654 999999998874 222 345899999999999 999999994
Q ss_pred -------CCCCcEEEEeCCcceEeCChHHHHhhhhcCCcccEEEEeccC
Q 000306 1592 -------HDQERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQEVVQDYD 1633 (1691)
Q Consensus 1592 -------~~~~~W~~FNDs~Vt~Vsewe~Vls~~~~~~~qPYILFYe~~ 1633 (1691)
...++||+..|..|.+| +|+.|+. .++|||||||.
T Consensus 836 ~~~sd~~~~~~~Wy~iSDs~Vrev-S~d~vLk------seAYlLFYERI 877 (877)
T KOG1873|consen 836 DFESDAGIPSGRWYYISDSIVREV-SLDEVLK------SEAYLLFYERI 877 (877)
T ss_pred cchhccCCCCcceEEecchheecc-cHHHHhh------hhhhhhheecC
Confidence 14689999999999996 6788885 68999999973
No 31
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.94 E-value=2.2e-27 Score=275.42 Aligned_cols=228 Identities=19% Similarity=0.280 Sum_probs=164.5
Q ss_pred ccccccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCccCCcHHHHHHHHHHHHHhhcCCCCCCcccCcHHHHHH
Q 000306 1299 YGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRIA 1378 (1691)
Q Consensus 1299 ~~~GL~NlG~~NTCYmNSVLQ~L~hip~FR~~ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~VsP~~L~~a 1378 (1691)
...||.|.| .|||+||+||+|+++|+||+.+.. ..+.+..+.|+.|+|..||..
T Consensus 14 ~~~gl~~~~--~~~y~n~~lq~~~~~~~~~~~~~~---~~~~~~~~~~l~~el~~lfs~--------------------- 67 (268)
T cd02672 14 NYAGLENHI--TNSYCNSLLQLLYFIPPFRNFTAI---ILVACPKESCLLCELGYLFST--------------------- 67 (268)
T ss_pred cccccccCC--ccchHHHHHHHHHhcHHHHHHHHh---hcccCCcCccHHHHHHHHHHH---------------------
Confidence 478999999 599999999999999999997322 235567778999999999911
Q ss_pred HhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEeccCC
Q 000306 1379 LSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSC 1458 (1691)
Q Consensus 1379 L~~~~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~~s~~~~~~~SiI~~LF~G~l~s~i~C~~C 1458 (1691)
+ .+-|-.+|++.++.+.... + ..|
T Consensus 68 ~-----------------iq~F~~fll~~i~~~~~~~-----------------------------~----------~~C 91 (268)
T cd02672 68 L-----------------IQNFTRFLLETISQDQLGT-----------------------------P----------FSC 91 (268)
T ss_pred H-----------------HHHHHHHHHHHHHHHhccc-----------------------------C----------CCC
Confidence 1 0456688899988753210 0 567
Q ss_pred Ccccccccccceeee-cchhhhhhhHhhcccCCHHHHHHHHhccc---ccccCCCCCCCCcc--ceEEEEccCCCC----
Q 000306 1459 GLESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMNH---QLACDPGAGGCEKL--NYIHHILSTPPH---- 1528 (1691)
Q Consensus 1459 g~~S~~~~~~sf~~l-I~~~~l~~~k~~~~~~SL~dlLk~~~~ee---~~~Cd~~c~~C~kk--~~kq~~I~rlP~---- 1528 (1691)
++++.+ .+.++.+ ++..... .....+|.+||+.+...+ .+.|+ .|+++ ..++..|.++|+
T Consensus 92 ~~~s~~--~~~~~~LsLpip~~~----~~~~~sl~~cL~~~~~~E~~~~~~C~----~C~~~~~a~k~~~i~~lP~~L~~ 161 (268)
T cd02672 92 GTSRNS--VSLLYTLSLPLGSTK----TSKESTFLQLLKRSLDLEKVTKAWCD----TCCKYQPLEQTTSIRHLPDILLL 161 (268)
T ss_pred Cceeec--cccceeeeeecCccc----cccCCCHHHHHHHHhhhhhccccccc----ccCcccccEEEEEeecCCCcccc
Confidence 877776 3344433 2221111 123479999999987544 45565 68776 456899999999
Q ss_pred eEEEEEEeecCCCc-------ccccccccccccceeccccccc-cCCCCCcEEEEEEEEEeC-----CeEEEEEEeCC--
Q 000306 1529 VFTTVLGWQNTCES-------FDDITATLAALSPEIDISILYR-GLDPKRRHSLVSVVCYYG-----QHYHCFAYSHD-- 1593 (1691)
Q Consensus 1529 VLiIhLkr~s~~~~-------~~KI~~~v~sfP~~LDLs~f~~-g~~~~~~Y~L~AVVvH~G-----GHY~AyVR~~~-- 1593 (1691)
||+|||+||..... ..++....+.||..+++..... +......|+|+|||+|.| |||+||||...
T Consensus 162 VL~i~lkrf~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~Y~L~gvV~hig~~~~~GHyva~vk~~~~~ 241 (268)
T cd02672 162 VLVINLSVTNGEFDDINVVLPSGKVMQNKVSPKAIDHDKLVKNRGQESIYKYELVGYVCEINDSSRGQHNVVFVIKVNEE 241 (268)
T ss_pred eEEEEEeccChhhcccCcceeEEEecCCeecccccccchhhhccCCCCCceEEEEEEEEEecCCCCCCcEEEEEEccCCC
Confidence 99999999875321 1122233445887776654432 334557899999999987 89999999643
Q ss_pred --CCcEEEEeCCcceEeCChHHHHhhhhcCCcccEEEEec
Q 000306 1594 --QERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQEVVQD 1631 (1691)
Q Consensus 1594 --~~~W~~FNDs~Vt~Vsewe~Vls~~~~~~~qPYILFYe 1631 (1691)
.++||.|||..|++|++ .||||||+
T Consensus 242 ~~~~~WylFND~~V~~vs~-------------~aYiLfY~ 268 (268)
T cd02672 242 STHGRWYLFNDFLVTPVSE-------------LAYILLYQ 268 (268)
T ss_pred CCCCcEEEecCeEEEEcCc-------------hheeeecC
Confidence 68899999999999986 69999995
No 32
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.2e-26 Score=308.46 Aligned_cols=299 Identities=20% Similarity=0.260 Sum_probs=224.8
Q ss_pred CCcccccccccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCccCCcHHHHHHHHHHHHHhhcCCCCCCcccCcH
Q 000306 1294 NGIDVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPT 1373 (1691)
Q Consensus 1294 ~gs~~~~~GL~NlG~~NTCYmNSVLQ~L~hip~FR~~ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~VsP~ 1373 (1691)
......++||.|+| |||||||+||+||+++.||+.++..........+...+..+|+.||..|+.+ +.++|.|.
T Consensus 164 k~~tg~~vGL~N~G--aTCY~NsllQ~lf~~~~FR~~Vy~~~~~~~~~~~~~~v~~~lq~lF~~LQ~s----~~k~Vdt~ 237 (1093)
T KOG1863|consen 164 KRLTGFPVGLKNLG--ATCYVNSLLQVLFLIPEFRRAVYSIPPFTGHEDPRRSIPLALQRLFYELQMS----KRKYVDTS 237 (1093)
T ss_pred hhcCCCCccccCCC--ceeeehHHHHHHHccHHHHHHHhcCCCCCCcccccchHHHHHHHHHHHHhhc----CCCCcCch
Confidence 33445668999999 6999999999999999999999998742111222335899999999999975 45699999
Q ss_pred HHHHHHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEE
Q 000306 1374 SLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERM 1453 (1691)
Q Consensus 1374 ~L~~aL~~~~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~~s~~~~~~~SiI~~LF~G~l~s~i 1453 (1691)
.+...+.... ....+|||+|||++.|+|.|++.+..... ...|.++|.|.+.+.+
T Consensus 238 ~~~~~~~~~~-----~~~~~QqDvqEf~~~l~d~LE~~~~~~~~--------------------~~~l~~lf~g~~~~~i 292 (1093)
T KOG1863|consen 238 ELTKSLGWDS-----NDSFEQQDVQEFLTKLLDWLEDSMIDAKV--------------------ENTLQDLFTGKMKSVI 292 (1093)
T ss_pred hhhhhhhccc-----ccHHhhhhHHHHHHHHHHHHHhhccchhh--------------------hhhhhhhhcCCcceEE
Confidence 9988887542 34569999999999999999998765421 4568899999999999
Q ss_pred eccCCCcccccccccceeee-cchhhhhhhHhhcccCCHHHHHHHHhcccccccCC-CCCCCCccce--EEEEccCCCCe
Q 000306 1454 NCYSCGLESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMNHQLACDP-GAGGCEKLNY--IHHILSTPPHV 1529 (1691)
Q Consensus 1454 ~C~~Cg~~S~~~~~~sf~~l-I~~~~l~~~k~~~~~~SL~dlLk~~~~ee~~~Cd~-~c~~C~kk~~--kq~~I~rlP~V 1529 (1691)
.|..|+..+.. .+.|..+ ++.... .++.+.|..|+..++..-+. -|..|...+. +...+..+|+|
T Consensus 293 ~c~~~~~~s~r--~e~f~d~ql~~~g~---------~nl~~sf~~y~~~E~l~gdn~~~~~~~~~~~a~k~~~f~~lPpv 361 (1093)
T KOG1863|consen 293 KCIDVDFESSR--SESFLDLQLNGKGV---------KNLEDSLHLYFEAEILLGDNKYDAECHGLQDAKKGVLFDSLPPV 361 (1093)
T ss_pred EEEeeeeeccc--cccccCccccccch---------hhHHHHHHHhhhHHHhcCCccccccccchhhhhcceeeccCCch
Confidence 99999998854 3344433 222111 33666666665433332221 1345776643 45788999999
Q ss_pred EEEEEEeecC---CCcccccccccccccceecccccccc--C---CCCCcEEEEEEEEEeC----CeEEEEEEeCCCCcE
Q 000306 1530 FTTVLGWQNT---CESFDDITATLAALSPEIDISILYRG--L---DPKRRHSLVSVVCYYG----QHYHCFAYSHDQERW 1597 (1691)
Q Consensus 1530 LiIhLkr~s~---~~~~~KI~~~v~sfP~~LDLs~f~~g--~---~~~~~Y~L~AVVvH~G----GHY~AyVR~~~~~~W 1597 (1691)
|.|+|+||.+ .+...|++..+. ||..|+|.+|+.. . ...+.|+|+||.+|.| |||++|++....++|
T Consensus 362 l~~qL~Rf~~~~~~~~~~Ki~d~~~-fp~~i~~d~~~~~~~~~~~~~~~~y~l~~v~vh~g~~~~ghy~~~i~~~~~~~w 440 (1093)
T KOG1863|consen 362 LFIQLMRFEYDFSTGQKIKINDKFE-FPLIIDMDRYLSRFKAEESERSAVYSLHAVLVHSGDAHSGHYVAYINPKLDGKW 440 (1093)
T ss_pred hhhhhhheeeeccCCceeehhhccC-CccccccchhccccchhhhhccceeccchhhcccccccCccceeeecchhhccc
Confidence 9999988876 345577777766 9999999998652 2 1224999999999988 999999998889999
Q ss_pred EEEeCCcceEeCChHHHHhhhhcCCcc---------cEEEEeccCCC
Q 000306 1598 IMYDDKTVKVVGSWSDVLSMCERGHLQ---------PQEVVQDYDEM 1635 (1691)
Q Consensus 1598 ~~FNDs~Vt~Vsewe~Vls~~~~~~~q---------PYILFYe~~e~ 1635 (1691)
+.|||..|+.++.++.+...++....- ||+|+|-+.+.
T Consensus 441 ~kfdd~~v~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~lv~~~~s~ 487 (1093)
T KOG1863|consen 441 VKFDDLVVTVVSEKEALEQNYGTEEIELSSTADFKNAYMLVYIRDSC 487 (1093)
T ss_pred eeccCceeeeccHHHHHHhhCCCcchhhhcccccCCcceEEEEecCc
Confidence 999999999999866555555432211 69999998765
No 33
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.4e-26 Score=301.43 Aligned_cols=316 Identities=22% Similarity=0.302 Sum_probs=229.5
Q ss_pred CCcccccccccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCcc-----CCcHHHHHHHHHHHHHhhcCCCCCCc
Q 000306 1294 NGIDVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHV-----GEPCVVCALYEIFTALSIASTDTRKE 1368 (1691)
Q Consensus 1294 ~gs~~~~~GL~NlG~~NTCYmNSVLQ~L~hip~FR~~ll~~~~~~~~~~-----~~~cv~~aL~~LF~~L~~ss~~~~~~ 1368 (1691)
.+...+.+||.|+| ||||||+.+|||.+.+.++++|+........+. ....+..+...+...++.. ...
T Consensus 240 ~~~~~g~~Gl~nlG--ntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~----~~~ 313 (842)
T KOG1870|consen 240 SPSERGETGLSNLG--NTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSG----NKS 313 (842)
T ss_pred CCCcccccccccCC--ccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccC----Ccc
Confidence 34556678999999 799999999999999999999998654321111 1225677888888888854 234
Q ss_pred ccCcHHHHHHHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCccccc-------ccCCCCccCC--CCc
Q 000306 1369 AVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVES-------NCMGSWDCTN--SAC 1439 (1691)
Q Consensus 1369 ~VsP~~L~~aL~~~~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es-------~~~~s~~~~~--~~S 1439 (1691)
.|.|..++..+....+. |.++.|||.+|||.+|||.||+.+......+..+..+. ...+.|.... ..+
T Consensus 314 ~v~~~~~~~~~~~~a~~---~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~~~~~~~~~s 390 (842)
T KOG1870|consen 314 AVAPTSFRTSLASFASE---FSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVWDYHLKRNRS 390 (842)
T ss_pred ccCchhhhhhhhhcccc---ccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHHHHHhhhhhccc
Confidence 89999999999988765 99999999999999999999999977654322222111 1122243332 478
Q ss_pred cccccccceEEEEEeccCCCcccccccccceeee----------------------------------------------
Q 000306 1440 IVHSLFGMDIFERMNCYSCGLESRHLKYTSFFHN---------------------------------------------- 1473 (1691)
Q Consensus 1440 iI~~LF~G~l~s~i~C~~Cg~~S~~~~~~sf~~l---------------------------------------------- 1473 (1691)
+|.++|.|.+.+.+.|..|++.+.+++ +|.++
T Consensus 391 ~i~d~~~~~~~S~~~c~~C~~~svt~d--~f~~Lslp~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~ 468 (842)
T KOG1870|consen 391 VIVDLFDGTYKSTLQCPTCGKVSVTFD--PFGYLSLPLPGKEIQKLEVTVPHGDGFRKPGALGVSVAKNGRIRDLLEYLS 468 (842)
T ss_pred eeeeeecceecccccCccCCCceEEee--ccccccccCCCCcccceeEEEecCCCCCChhheeeeccccchHHHHHHHHH
Confidence 999999999999999999998765531 11100
Q ss_pred --------------------------------------------cc----------------------------------
Q 000306 1474 --------------------------------------------IN---------------------------------- 1475 (1691)
Q Consensus 1474 --------------------------------------------I~---------------------------------- 1475 (1691)
+.
T Consensus 469 ~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 548 (842)
T KOG1870|consen 469 RTVGLLSWELKPVEILFDCFNKIFAADELKLDSIYSDEELFDYELGVLKVQGSIYAIIVVRFRSRLPRSKGIRSHVSSKL 548 (842)
T ss_pred HHhccchhhcccceeccchhhhhhccCccccccccCCcceEEeecccccccccceEEEEEeeccccccccCcccCCCccc
Confidence 00
Q ss_pred ------------hh--------------------------------hhhhhH---------------------------h
Q 000306 1476 ------------AS--------------------------------ALRTMK---------------------------V 1484 (1691)
Q Consensus 1476 ------------~~--------------------------------~l~~~k---------------------------~ 1484 (1691)
.. .+.... .
T Consensus 549 ~g~p~~~~~~~~~~~t~~~l~~~~~~~~s~~~~~~~~~v~~~~~~~~~~~~~e~~~~s~~~~~~~~~~~~~~~~~~~~~~ 628 (842)
T KOG1870|consen 549 FGLPLLVSVLSGAQSTEEDLLSVICHRTSRYSREPPLNVGYGVDDQSLKEVSEQSAESSSSVSRDPSEDDNSDQDLSLEC 628 (842)
T ss_pred cCCcceeeccCCCcccccchhhHHhhcccccCCcCccccccCCCcccccccccccccccccccCCChhHhccccccchhh
Confidence 00 000000 0
Q ss_pred ---------------------------------------------------------------hcccCCHHHHHHHHhcc
Q 000306 1485 ---------------------------------------------------------------MCAESSLDELLNLVEMN 1501 (1691)
Q Consensus 1485 ---------------------------------------------------------------~~~~~SL~dlLk~~~~e 1501 (1691)
.....+|.+||+.|+..
T Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cl~~F~~~ 708 (842)
T KOG1870|consen 629 LSEESALRFFQSLESRNKSDSEFEPGSTSIAVDWSPSAKYKYSSSLVSQPPEVEPRGASRSKGSPAPNSLESCLELFSEP 708 (842)
T ss_pred ccCcccccccccccccccccccccCCCceeecccChhhccccccccccccccccccccccccCCCCcccHHHHHHhhcch
Confidence 01123678888887643
Q ss_pred ------cccccCCCCCCCCcc--ceEEEEccCCCCeEEEEEEeecCCCc-ccccccccccccce-eccccccccCCCCCc
Q 000306 1502 ------HQLACDPGAGGCEKL--NYIHHILSTPPHVFTTVLGWQNTCES-FDDITATLAALSPE-IDISILYRGLDPKRR 1571 (1691)
Q Consensus 1502 ------e~~~Cd~~c~~C~kk--~~kq~~I~rlP~VLiIhLkr~s~~~~-~~KI~~~v~sfP~~-LDLs~f~~g~~~~~~ 1571 (1691)
+.|.|+ +|.+. ++++..|+++|+||||||+||.+... ..|+...+. ||.. ||+++|+.+-+. ..
T Consensus 709 E~L~~~~~w~C~----~Cke~~~A~Kk~~lwrlPeiLiihLKrF~~~r~~~~k~~~~v~-fPi~~ld~s~~~~~~~~-~~ 782 (842)
T KOG1870|consen 709 ETLGKDDRWYCP----QCKELRQATKKLDLWRLPEILIIHLKRFQYSRESSSKVKTKVE-FPLGSLDLSEFVVNKEQ-VL 782 (842)
T ss_pred hcCCccccccCh----HHHHHHHHhhhhhhhhCCceEEEEeecceeechhhhhhCcccc-CCCcCCCcchhhccCcc-ce
Confidence 456675 68776 56789999999999999998876544 355555544 7765 999999875554 89
Q ss_pred EEEEEEEEEeC----CeEEEEEEeCCCCcEEEEeCCcceEeCChHHHHhhhhcCCcccEEEEeccC
Q 000306 1572 HSLVSVVCYYG----QHYHCFAYSHDQERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQEVVQDYD 1633 (1691)
Q Consensus 1572 Y~L~AVVvH~G----GHY~AyVR~~~~~~W~~FNDs~Vt~Vsewe~Vls~~~~~~~qPYILFYe~~ 1633 (1691)
|+|+||++|+| ||||||+|+..+++||.|||+.|+.|++++ +.. -.+|+|||++.
T Consensus 783 Y~l~av~nHyG~l~~GHYta~~k~~~~~~w~~fdDs~v~~~~~~~-i~t------~~aY~Lfy~r~ 841 (842)
T KOG1870|consen 783 YDLYAVGNHYGQLSGGHYTAYAKNVGDGKWYLFDDSSVSEVDEDE-IDT------EAAYVLFYRRL 841 (842)
T ss_pred eeeeeeecccCCcCCcchhhhhhcCCCCceEEeccccCCCCChhh-ccc------ccceEEEEEec
Confidence 99999999999 999999998889999999999999987633 332 35899999974
No 34
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.93 E-value=5.4e-25 Score=259.54 Aligned_cols=273 Identities=18% Similarity=0.242 Sum_probs=200.8
Q ss_pred ccccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCccCCcHHHHHHHHHHHHHh-hcCCCCCCcccCcHHHHHHH
Q 000306 1301 AGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALS-IASTDTRKEAVAPTSLRIAL 1379 (1691)
Q Consensus 1301 ~GL~NlG~~NTCYmNSVLQ~L~hip~FR~~ll~~~~~~~~~~~~~cv~~aL~~LF~~L~-~ss~~~~~~~VsP~~L~~aL 1379 (1691)
.||.|.+ ++||+||+||+|+++|+||+.++... .+..+.|+.|.|..||..|. .. +...+.+..|.++|
T Consensus 1 ~GlEn~~--~nsY~NslLQ~l~f~~~~r~~~l~h~----~c~~e~cL~cELgfLf~ml~~~~----~g~~cq~sNflr~l 70 (295)
T PF13423_consen 1 SGLENHI--PNSYCNSLLQVLYFIPPLRNFLLSHL----ECPKEFCLLCELGFLFDMLDSKA----KGINCQASNFLRAL 70 (295)
T ss_pred CCCcCCC--CcchHHHHHHHHHhCHHHHHHHHhCc----CCCccccHHHHHHHHHHHhhhhc----CCCcChHHHHHHHH
Confidence 4899999 69999999999999999999998743 26677899999999999999 53 55788899999999
Q ss_pred hhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEeccCCC
Q 000306 1380 SNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCG 1459 (1691)
Q Consensus 1380 ~~~~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~~s~~~~~~~SiI~~LF~G~l~s~i~C~~Cg 1459 (1691)
+.... ....+.|+|.++|+.+||+.|+.++............ .......+.|.++|+......++|..|+
T Consensus 71 ~~~~~---a~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~i~~~f~~~~~~~~~c~~c~ 140 (295)
T PF13423_consen 71 SWIPE---AAALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTSE-------NSSSSPESSISQLFGTSFETTIRCTSCG 140 (295)
T ss_pred hcCHH---HHhcchhHHHHHHHHHHHHHHhHHHHhcCcccccccc-------cccCCCcchHHHHhCcceeeeecccccC
Confidence 87532 2445669999999999999999998665431100000 0111235779999999999999999999
Q ss_pred cccccccccceeeecchhhhhhhHhhcccCCHHHHHHHHhccc---ccccCCCCCCCCccce--EEEEccCCCCeEEEEE
Q 000306 1460 LESRHLKYTSFFHNINASALRTMKVMCAESSLDELLNLVEMNH---QLACDPGAGGCEKLNY--IHHILSTPPHVFTTVL 1534 (1691)
Q Consensus 1460 ~~S~~~~~~sf~~lI~~~~l~~~k~~~~~~SL~dlLk~~~~ee---~~~Cd~~c~~C~kk~~--kq~~I~rlP~VLiIhL 1534 (1691)
..+.+........+.++. .....+|.++|+.....+ ...|+ .|++... .++.|.++|+||.|.+
T Consensus 141 ~~~~~~~~~~~~~l~yp~-------~~~~~tf~~~Le~sl~~e~~~~a~C~----~C~~~~~~~~~r~i~~LPpVL~In~ 209 (295)
T PF13423_consen 141 HESVKESSTLVLDLPYPP-------SNSNVTFSQVLEHSLNREQQTRAWCE----KCNKYQPTEQRRTIRSLPPVLSINL 209 (295)
T ss_pred CeEEeecceeeeeccCCC-------CCccchHHHHHHHHHhhccccccccc----ccccccceeeeeeccCCCcEEEEEc
Confidence 988664321112222221 122479999999876433 34676 5988743 4788999999999999
Q ss_pred EeecCCC-cccccccccccccceecccccccc--------CCCCCcEEEEEEEEEeC-----CeEEEEEEeCC--CCcEE
Q 000306 1535 GWQNTCE-SFDDITATLAALSPEIDISILYRG--------LDPKRRHSLVSVVCYYG-----QHYHCFAYSHD--QERWI 1598 (1691)
Q Consensus 1535 kr~s~~~-~~~KI~~~v~sfP~~LDLs~f~~g--------~~~~~~Y~L~AVVvH~G-----GHY~AyVR~~~--~~~W~ 1598 (1691)
++.+... ...+....+ .+|..+++..++.. .....+|+|.|+|+|.| ||||+|||-.. +.+||
T Consensus 210 ~~~~~~~~w~~~~~~~~-~ip~~i~~~~~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~~~~~~HlVs~vrv~~~~~~~W~ 288 (295)
T PF13423_consen 210 NRYSEEEFWPKKNWLKI-WIPPSINLPHFIADDSQSDLEGESGIFKYELRSMVCHIGDSIESGHLVSLVRVGPSDDSQWY 288 (295)
T ss_pred cCCCcccccccccCCce-ecceeeeccccccccccccccCCCCceEEEEEEEEEEecCCCCCCceEEEEEcCCCCCCcEE
Confidence 7765531 122333333 48888888766531 23456999999999999 99999999542 37999
Q ss_pred EEeCCcc
Q 000306 1599 MYDDKTV 1605 (1691)
Q Consensus 1599 ~FNDs~V 1605 (1691)
+|||..|
T Consensus 289 lFNDflV 295 (295)
T PF13423_consen 289 LFNDFLV 295 (295)
T ss_pred EECcEeC
Confidence 9999765
No 35
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=99.92 E-value=3.9e-25 Score=218.68 Aligned_cols=107 Identities=39% Similarity=0.585 Sum_probs=103.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHH
Q 000306 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEF 141 (1691)
Q Consensus 62 ~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~i 141 (1691)
++|++++++|||+|||++|+|++++||++..+|++|++||+||+++|..++|+++|++||++||+||++|..|+|+|
T Consensus 1 e~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~--- 77 (111)
T PF04781_consen 1 EKAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS--- 77 (111)
T ss_pred ChHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH---
Confidence 46899999999999999999999999998777899999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhcc---CccHHHHHHHHHHhhcccCC
Q 000306 142 AHFYANLLYEAAND---GKEYEEVVQECERALAIENP 175 (1691)
Q Consensus 142 a~~~A~~L~~~~~~---~~~Y~ea~~e~~RaL~I~~P 175 (1691)
|++||++|++ ..+|++|+.+|+|||+|.+|
T Consensus 78 ----A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~~p 110 (111)
T PF04781_consen 78 ----AHSLFELASQLGSVKYYKKAVKKAKRGLSVTNP 110 (111)
T ss_pred ----HHHHHHHHHHhhhHHHHHHHHHHHHHHhcccCC
Confidence 9999999999 55999999999999999999
No 36
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.6e-25 Score=266.22 Aligned_cols=270 Identities=16% Similarity=0.240 Sum_probs=201.0
Q ss_pred cccccccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCccCCcHHHHHHHHHHHHHhhcCCCCCCcccCcHHHHH
Q 000306 1298 VYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRI 1377 (1691)
Q Consensus 1298 ~~~~GL~NlG~~NTCYmNSVLQ~L~hip~FR~~ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~VsP~~L~~ 1377 (1691)
-...||.|... |||+|+.+|+|+..|.|+..++... ..++....|.+
T Consensus 85 ~~yvglvnqa~--~~~l~~~~~a~~~~~~~~~~~yts~-------------------------------~~~~et~dlt~ 131 (1203)
T KOG4598|consen 85 HRYVGLVNQAS--NDLLFEQSCAISLHDSGISKCYTSE-------------------------------NDSLETKDLTQ 131 (1203)
T ss_pred cceEeehhhHH--HHHHHHHhhhhccChhhhhhhhCCC-------------------------------cccccchhhHh
Confidence 34579999995 9999999999999999998876311 12333444444
Q ss_pred HHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEeccC
Q 000306 1378 ALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYS 1457 (1691)
Q Consensus 1378 aL~~~~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~~s~~~~~~~SiI~~LF~G~l~s~i~C~~ 1457 (1691)
.|+.. + -..++|||.||+-+.++|.|+-. |+..+...+|.+++.|.+...+.|.+
T Consensus 132 sfgw~--s---~ea~~qhdiqelcr~mfdalehk--------------------~k~t~~~~li~~ly~g~m~d~v~cl~ 186 (1203)
T KOG4598|consen 132 SFGWT--S---NEAYDQHDVQELCRLMFDALEHK--------------------WKGTEHEKLIQDLYRGTMEDFVACLK 186 (1203)
T ss_pred hcCCC--c---chhhhhhhHHHHHHHHHHHHHhh--------------------hcCchHHHHHHHHhcchHHHHHHHHH
Confidence 44422 1 23578999999999999999764 44445578999999999999999999
Q ss_pred CCcccccccccceeeecchhhhhhhHhhcccCCHHHHHHHHh------cccccccCCCCCCCCccc--eEEEEccCCCCe
Q 000306 1458 CGLESRHLKYTSFFHNINASALRTMKVMCAESSLDELLNLVE------MNHQLACDPGAGGCEKLN--YIHHILSTPPHV 1529 (1691)
Q Consensus 1458 Cg~~S~~~~~~sf~~lI~~~~l~~~k~~~~~~SL~dlLk~~~------~ee~~~Cd~~c~~C~kk~--~kq~~I~rlP~V 1529 (1691)
|+.++.+. .+|..|+.. ++-........+++++|..|. +.++|.|+ +|+++. .+-..|..+|-+
T Consensus 187 c~~e~~~~---d~fld~pl~-v~pfg~~~ay~sieeal~afvqpe~ldg~nqy~ce----~ck~k~dahkgl~~~~fpy~ 258 (1203)
T KOG4598|consen 187 CGRESVKT---DYFLDLPLA-VKPFGAIHAYKSVEEALTAFVQPELLDGSNQYMCE----NCKSKQDAHKGLRITQFPYL 258 (1203)
T ss_pred cCcccccc---ceeeccccc-ccCCcchhhhhhHHHHHHHhcChhhcCCccHHHHh----hhhhhhhhhcCceeecccee
Confidence 99999873 344444432 111111122368999999886 45688897 598885 456889999999
Q ss_pred EEEEEEeecCC---CcccccccccccccceeccccccccC----------------------------C-----------
Q 000306 1530 FTTVLGWQNTC---ESFDDITATLAALSPEIDISILYRGL----------------------------D----------- 1567 (1691)
Q Consensus 1530 LiIhLkr~s~~---~~~~KI~~~v~sfP~~LDLs~f~~g~----------------------------~----------- 1567 (1691)
|+|||+||... .-..|++..+. ||..|||..|.... +
T Consensus 259 lt~~lkrfdfdy~tmhriklnd~~t-fp~~l~ln~~in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s 337 (1203)
T KOG4598|consen 259 LTIQLKRFDFDYNTMHRIKLNDKMT-FPDVLDLNDYVNKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQS 337 (1203)
T ss_pred eEEeeecccccchheeeeeeccccc-CcccccHHHhhhhccCCcchhHhhhcccccccccccccccCCCCcccCcccccC
Confidence 99999987543 23477888776 99999999885200 0
Q ss_pred ----------------------------CCCcEEEEEEEEEeC----CeEEEEEEeCCCCcEEEEeCCcceEeCChHHHH
Q 000306 1568 ----------------------------PKRRHSLVSVVCYYG----QHYHCFAYSHDQERWIMYDDKTVKVVGSWSDVL 1615 (1691)
Q Consensus 1568 ----------------------------~~~~Y~L~AVVvH~G----GHY~AyVR~~~~~~W~~FNDs~Vt~Vsewe~Vl 1615 (1691)
....|+|++|.+|+| |||+||+++..+++||+|||.+|+.+.. +++.
T Consensus 338 ~~~~~~~~n~~~g~~~~~~~~~~~~~~sg~~~yelf~imihsg~a~gghy~ayik~~d~~~w~~fnd~~v~~~t~-~~i~ 416 (1203)
T KOG4598|consen 338 PNRYQGSENVCVGQPIDHAAVDDIVKTSGDNVYELFSVMVHSGNAAGGHYFAYIKNLDQDRWYVFNDTRVDFATP-LEIE 416 (1203)
T ss_pred cccccCccccccCCcCchhhhhhHhhcCCccHHHhhhhheecCCCCCceeeeeecccCcCceEEecCccccccCH-HHHH
Confidence 012799999999999 9999999999999999999999999875 4555
Q ss_pred hhhhc-------CCcccEEEEeccCCC
Q 000306 1616 SMCER-------GHLQPQEVVQDYDEM 1635 (1691)
Q Consensus 1616 s~~~~-------~~~qPYILFYe~~e~ 1635 (1691)
..+|+ .+..+|||.|++.++
T Consensus 417 ~sfgg~~~~~~~s~tnaymlmyr~id~ 443 (1203)
T KOG4598|consen 417 KSFGGHPSGWNQSNTNAYMLMYRRIDP 443 (1203)
T ss_pred HhhCCCCCCccccCcchhhhhhhhcCc
Confidence 55553 234579999998654
No 37
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.89 E-value=2.9e-23 Score=236.37 Aligned_cols=122 Identities=21% Similarity=0.267 Sum_probs=93.4
Q ss_pred cCCHHHHHHHHhcccccccCCCCCCCCccceEEEEccCCCCeEEEEEEeecCCCc-ccccccccccccceeccccccccC
Q 000306 1488 ESSLDELLNLVEMNHQLACDPGAGGCEKLNYIHHILSTPPHVFTTVLGWQNTCES-FDDITATLAALSPEIDISILYRGL 1566 (1691)
Q Consensus 1488 ~~SL~dlLk~~~~ee~~~Cd~~c~~C~kk~~kq~~I~rlP~VLiIhLkr~s~~~~-~~KI~~~v~sfP~~LDLs~f~~g~ 1566 (1691)
..+|++||+.|+..+. |.++|+||+|||+||..... ..|+...+. ||..|||.+|+.+.
T Consensus 79 ~~tLedcLe~~~~~e~-------------------i~~lP~vLiIhLKRF~~~~~~~~Kl~~~I~-fP~~Ldl~~~~~~~ 138 (241)
T cd02670 79 GITLEQCLEQYFNNSV-------------------FAKAPSCLIICLKRYGKTEGKAQKMFKKIL-IPDEIDIPDFVADD 138 (241)
T ss_pred cCCHHHHHHHHhchhh-------------------hhhCCCeEEEEEEccccCCCcceeCCcEEC-CCCcCCchhhcccc
Confidence 4799999999876543 88999999999999987543 357777765 99999999987432
Q ss_pred -----------------------CCCCcEEEEEEEEEeC-----CeEEEEEEeCC-----------CCcEEEEeCCcceE
Q 000306 1567 -----------------------DPKRRHSLVSVVCYYG-----QHYHCFAYSHD-----------QERWIMYDDKTVKV 1607 (1691)
Q Consensus 1567 -----------------------~~~~~Y~L~AVVvH~G-----GHY~AyVR~~~-----------~~~W~~FNDs~Vt~ 1607 (1691)
.....|+|+|||+|.| ||||||||+.. ++.|++|||..|+.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~vr~~~~~~~~~~~~~~~~~W~~FDD~~v~~ 218 (241)
T cd02670 139 PRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYGSYSLTETDNEAYNAQWVFFDDMADRD 218 (241)
T ss_pred cccccccccccccccccccccCCCCCeEEEEEEEEEeCCCCCCCcCeEEEEECCcccccccccCCCCCeEEEecCccccc
Confidence 1235899999999999 99999999764 37999999999988
Q ss_pred eCChH-HHHhhhhcCCcccEEEEec
Q 000306 1608 VGSWS-DVLSMCERGHLQPQEVVQD 1631 (1691)
Q Consensus 1608 Vsewe-~Vls~~~~~~~qPYILFYe 1631 (1691)
+..-. ++-. ....-.||||||+
T Consensus 219 ~~~~~~~~~~--~~~~~~aYmLFYq 241 (241)
T cd02670 219 GVSNGFNIPA--ARLLEDPYMLFYQ 241 (241)
T ss_pred ccccccccch--hcccCCceEEEeC
Confidence 64311 1100 1124579999996
No 38
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=8.4e-23 Score=235.20 Aligned_cols=320 Identities=18% Similarity=0.163 Sum_probs=210.1
Q ss_pred cccccccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCC-CCCccCCcHHHHHHHHHHHHHhhcC--------------
Q 000306 1298 VYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPS-EHIHVGEPCVVCALYEIFTALSIAS-------------- 1362 (1691)
Q Consensus 1298 ~~~~GL~NlG~~NTCYmNSVLQ~L~hip~FR~~ll~~~~~-~~~~~~~~cv~~aL~~LF~~L~~ss-------------- 1362 (1691)
+.|+|+.|-+ |.|||||+||+|..|++|.+.+-.+... .........++.++..+...+...+
T Consensus 26 i~Prg~ink~--n~c~~ns~Lqal~~c~pfy~l~~~i~~~~~~~~~~stp~lda~~~~~~df~n~~~~k~~r~N~~~~~~ 103 (420)
T KOG1871|consen 26 IDPRGSINKC--NICFMNSILQALLYCSPFYNLLELIKRADGTVKEGSTPLLDASRPASSDFNNDSDAKLPRKNSLRVPE 103 (420)
T ss_pred cCCccccccc--eeEeeHHHHHHHHhCccHHHHHHhhhhhcCceecccchhHHHHHHHHhhccccchhhhhhhccCCccc
Confidence 6789999999 8999999999999999999888665421 1111222345666666665554211
Q ss_pred ----------CCCCCcccCcHHHHHHHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCC--------------
Q 000306 1363 ----------TDTRKEAVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNV-------------- 1418 (1691)
Q Consensus 1363 ----------~~~~~~~VsP~~L~~aL~~~~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~-------------- 1418 (1691)
...+..++-|..+...+... +.......|.|.||.|||.++||.||+++......
T Consensus 104 ~~~~~ses~~~d~~~dav~~d~~~~~l~t~-~~~e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~~i 182 (420)
T KOG1871|consen 104 HVVEKSESNKSDLQGDAVKPDPIYLDLLTM-SRFESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRGLI 182 (420)
T ss_pred cccchhhhhhhcccCccccCCchhhhcccC-CchhhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCcccccccccc
Confidence 11345566666665555542 34455667999999999999999999987433110
Q ss_pred C-----CCcccccccCC---CC-ccC------------CCCccccccccceEEEEEeccCCCcccccccccceeeecchh
Q 000306 1419 S-----DTESVESNCMG---SW-DCT------------NSACIVHSLFGMDIFERMNCYSCGLESRHLKYTSFFHNINAS 1477 (1691)
Q Consensus 1419 s-----~~es~es~~~~---s~-~~~------------~~~SiI~~LF~G~l~s~i~C~~Cg~~S~~~~~~sf~~lI~~~ 1477 (1691)
. ..++.+.+..+ .| .+. ...++|+++|+|++++.+.-..-+-.-.-.+|.+....|...
T Consensus 183 ~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~nkeS~tlqPF~tlqldiq~~ 262 (420)
T KOG1871|consen 183 NNGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPSNKESATLQPFFTLQLDIQSE 262 (420)
T ss_pred cccccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceeccccccccccCccceeeeeeecc
Confidence 0 11111111100 01 011 136789999999999988765543332222455555555443
Q ss_pred hhhhhHhhcccCCHHHHHHHHhcccccccCCCCCCCCccceEEEEccCCCCeEEEEEEeecC--CCcccccccccccccc
Q 000306 1478 ALRTMKVMCAESSLDELLNLVEMNHQLACDPGAGGCEKLNYIHHILSTPPHVFTTVLGWQNT--CESFDDITATLAALSP 1555 (1691)
Q Consensus 1478 ~l~~~k~~~~~~SL~dlLk~~~~ee~~~Cd~~c~~C~kk~~kq~~I~rlP~VLiIhLkr~s~--~~~~~KI~~~v~sfP~ 1555 (1691)
.+ .+..+++..+...+..---....+-.-.+.++..|.++|++|++||+||.+ .++..|+.+.+. +|+
T Consensus 263 ~i---------~sv~~ales~~~re~lp~~st~s~~eV~~s~q~~leklp~vlilhlkrF~ye~tgg~~k~~K~i~-~~~ 332 (420)
T KOG1871|consen 263 KI---------HSVQDALESLVARESLPGYSTKSGQEVEASSQTTLEKLPPVLILHLKRFVYEKTGGARKLGKKIE-YPW 332 (420)
T ss_pred cc---------CCHHHHhhccChhhcccceecCCCCeechhhhhhHhhcchhhhhhhhHHHHHhccchhhhchhhh-ccc
Confidence 33 455666655544332211100011111234588999999999999998765 345577777765 999
Q ss_pred eeccccccc--cCC-----CCCcEEEEEEEEEeC-----CeEEEEEEeCCCCcEEEEeCCcceEeCChHHHHhhhhcCCc
Q 000306 1556 EIDISILYR--GLD-----PKRRHSLVSVVCYYG-----QHYHCFAYSHDQERWIMYDDKTVKVVGSWSDVLSMCERGHL 1623 (1691)
Q Consensus 1556 ~LDLs~f~~--g~~-----~~~~Y~L~AVVvH~G-----GHY~AyVR~~~~~~W~~FNDs~Vt~Vsewe~Vls~~~~~~~ 1623 (1691)
++.+..-+. |+. -...|+|++||.|+| |||+..+.+...+.|+.+||..|..|.. ++|+. ..+..
T Consensus 333 ~l~i~~~~~s~gvk~~~~~~~~~yks~~vvyhtgtsatvghYl~dv~~s~~~gw~rIDD~~i~~v~q-~dv~~--~t~~r 409 (420)
T KOG1871|consen 333 TLKISKNCFSQGLKIRILIATRPYKSLAVVYHTGTSATVGHYLEDVSRSVPSGWQRIDDALILFVAQ-EDVEK--VTGSR 409 (420)
T ss_pred eeeechhhhccccchhhhccccccceEEEEEecccccccCceEEeeeecccCceeEeccceeeeccH-hhhcc--ccCcc
Confidence 998886543 332 245899999999999 9999999988889999999999999764 77776 35567
Q ss_pred ccEEEEeccC
Q 000306 1624 QPQEVVQDYD 1633 (1691)
Q Consensus 1624 qPYILFYe~~ 1633 (1691)
.||+|+|.+.
T Consensus 410 ~~yllyY~~~ 419 (420)
T KOG1871|consen 410 TPYLLYYIEA 419 (420)
T ss_pred chheeEeeec
Confidence 8999999854
No 39
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.9e-22 Score=252.50 Aligned_cols=309 Identities=20% Similarity=0.295 Sum_probs=209.6
Q ss_pred ccccccCCCCCCcccch--HHHHHHHhhHHHHHHHhccCCCCCC-ccCCcHHHHHHHHHHHHHhhcCCCCCCcccCcHHH
Q 000306 1299 YGAGLKNEVGEYNCFLN--VIIQSLWHLRRFREEFSRRSPSEHI-HVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSL 1375 (1691)
Q Consensus 1299 ~~~GL~NlG~~NTCYmN--SVLQ~L~hip~FR~~ll~~~~~~~~-~~~~~cv~~aL~~LF~~L~~ss~~~~~~~VsP~~L 1375 (1691)
...|..|.+ ++|+.| ++.|.++.+.+++...+......-. ......+...+..+|....... .....+.|..+
T Consensus 231 ~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~i~p~~~ 306 (587)
T KOG1864|consen 231 RVFGTNNFS--NTCCCNFQSVEEALYFCRPFREAVLLYLTSLKRSYIIKEELLTCLLDLFSSISSRK--KLVGRISPTRF 306 (587)
T ss_pred cccCccccC--ccccccchhhHHHHHhhhhhcccccchhhcccchhhhhHHHHHHhhhhccchhhhc--ccccccCcchh
Confidence 445678888 699999 9999999999999665554321100 0111234445555555443221 24567899999
Q ss_pred HHHHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCccc----ccc---cCCCCccCC-----CCccccc
Q 000306 1376 RIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESV----ESN---CMGSWDCTN-----SACIVHS 1443 (1691)
Q Consensus 1376 ~~aL~~~~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~----es~---~~~s~~~~~-----~~SiI~~ 1443 (1691)
+..+++.... |..++|||||||+.++++.+++.+............ +.+ ....|.+.. ...+++.
T Consensus 307 ~~~~~~~~~~---f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~v~~ 383 (587)
T KOG1864|consen 307 ISDLIKENEL---FTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNKGHHKSLRENWVSK 383 (587)
T ss_pred hhhhhhcCCc---cCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccccccccccccccchhHHHH
Confidence 8888876544 999999999999999999999877554321111111 111 122233322 4789999
Q ss_pred cccceEEEEEeccCCCcccccccccceeeecchhhhhhhHhhcccCCHHHHHHHHh------cccccccCCCCCCCCccc
Q 000306 1444 LFGMDIFERMNCYSCGLESRHLKYTSFFHNINASALRTMKVMCAESSLDELLNLVE------MNHQLACDPGAGGCEKLN 1517 (1691)
Q Consensus 1444 LF~G~l~s~i~C~~Cg~~S~~~~~~sf~~lI~~~~l~~~k~~~~~~SL~dlLk~~~------~ee~~~Cd~~c~~C~kk~ 1517 (1691)
+|.|++..+..|..|...+... ..|.+. +.+... .+..++..||+.|. ++++|.|+. |...+
T Consensus 384 lf~g~l~~et~Clsc~t~T~~d--e~f~D~-~~~v~~-----de~~si~~~l~~~~~~e~l~g~nky~c~~----c~s~q 451 (587)
T KOG1864|consen 384 LFQGILTNETRCLSCETITSRD--EGFLDL-SVAVEI-----DENTSITNLLKSFSSTETLSGENKYSCEN----CCSLQ 451 (587)
T ss_pred hhcCeeeeeeeecccccccccc--cccccc-ceeccc-----cccccHHHHHHHhcchhhccCCCcccccc----cCchh
Confidence 9999999999999999988763 344432 111110 03467888888764 667888874 66554
Q ss_pred --eEEEEccCCCCeEEEEEEeecCCCc---ccccccccccccceecccccccc-CCCCCcEEEEEEEEEeC-----CeEE
Q 000306 1518 --YIHHILSTPPHVFTTVLGWQNTCES---FDDITATLAALSPEIDISILYRG-LDPKRRHSLVSVVCYYG-----QHYH 1586 (1691)
Q Consensus 1518 --~kq~~I~rlP~VLiIhLkr~s~~~~---~~KI~~~v~sfP~~LDLs~f~~g-~~~~~~Y~L~AVVvH~G-----GHY~ 1586 (1691)
.++..++.+|.+|+|||++|++.+. ..++...+. +|.++.+...... ..+...|+|+|||+|.| |||+
T Consensus 452 eae~~l~~k~lp~~L~l~Lkrfk~~~~~~~~~kl~~~v~-~plel~l~~~~~~~~~~~~~Y~L~avVvH~G~~p~~GHYi 530 (587)
T KOG1864|consen 452 EAERRLKIKKLPYVLTLHLKRFKYSEQQNRYTKLLYRVV-FPLELRLKDTLKDDNNPDRKYDLVAVVVHLGSTPNRGHYV 530 (587)
T ss_pred hHHHhccccCCcceeeeehhccccccccccccccccccc-cccceeeccccccccCccceeeEEEEEEeccCCCCCcceE
Confidence 4577889999999999999987642 245555544 7777777544332 22347999999999999 9999
Q ss_pred EEEEeCCCCcEEEEeCCcceEeCChHHHHhhhhcCCcccEEEEecc
Q 000306 1587 CFAYSHDQERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQEVVQDY 1632 (1691)
Q Consensus 1587 AyVR~~~~~~W~~FNDs~Vt~Vsewe~Vls~~~~~~~qPYILFYe~ 1632 (1691)
||+|....+ |+.|||+.|+.+.. +.|....+ ..+|++||..
T Consensus 531 a~~r~~~~n-Wl~fdD~~V~~~s~-~~v~~~~~---~s~~~~~~~~ 571 (587)
T KOG1864|consen 531 AYVKSLDFN-WLLFDDDNVEPISE-EPVSEFTG---SSGDTLFYYV 571 (587)
T ss_pred EEEeeCCCC-ceecccccccccCc-chhhhccC---CCccceeeeE
Confidence 999954333 99999999999875 66666544 3466777763
No 40
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=8.9e-21 Score=224.01 Aligned_cols=296 Identities=19% Similarity=0.188 Sum_probs=202.4
Q ss_pred cccccccccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCc---cCCcHHHHHHHHHHHHHhhcCCCCCCcccCc
Q 000306 1296 IDVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIH---VGEPCVVCALYEIFTALSIASTDTRKEAVAP 1372 (1691)
Q Consensus 1296 s~~~~~GL~NlG~~NTCYmNSVLQ~L~hip~FR~~ll~~~~~~~~~---~~~~cv~~aL~~LF~~L~~ss~~~~~~~VsP 1372 (1691)
....+.||.|+| ||||||+.+|||-.+|+++..+.......... .....+..+++.+|..|... ..+.|
T Consensus 101 ~~~lp~gl~nlg--NtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~a~~i~~~mR~~f~~~~~~------~~v~p 172 (473)
T KOG1872|consen 101 ALPLPVGLPNLG--NTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTWERRRRISIETRTCFRPLCEK------GAVAP 172 (473)
T ss_pred hccCCccccchh--HHHHhhhhhhhhhcCccCcchhhccchhccCCchhhhhhhHHHHHHHHHHhhhcc------CCcch
Confidence 456777999999 89999999999999999988887654221111 11236788999999999842 68999
Q ss_pred HHHHHHHhhhCCCCccchh------hccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCcccccccc
Q 000306 1373 TSLRIALSNLYPDSNFFQE------AQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFG 1446 (1691)
Q Consensus 1373 ~~L~~aL~~~~p~~~~F~~------g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~~s~~~~~~~SiI~~LF~ 1446 (1691)
..+...+.+.+|+ |.. +.||||.|++..++-.+|..+...... ......+..+|+
T Consensus 173 i~llqtl~~~~Pq---fa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~~----------------~~~~~~~d~~f~ 233 (473)
T KOG1872|consen 173 INLLQTLSSQYPQ---FAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATEA----------------PCLEAEAAAGFG 233 (473)
T ss_pred HHHHHHHHHHhHH---HHHHhhhhhHHHHHHhHhHHHhhhheeccccccccc----------------cchhHHHHHhhc
Confidence 9999999998888 544 789999999999999999977554221 123677899999
Q ss_pred ceEEEEEeccCCCccccccccccee---eecchhhhhhhHhhcccCCHHHHHHHHhcccccccCCCCCCCCccceEEEEc
Q 000306 1447 MDIFERMNCYSCGLESRHLKYTSFF---HNINASALRTMKVMCAESSLDELLNLVEMNHQLACDPGAGGCEKLNYIHHIL 1523 (1691)
Q Consensus 1447 G~l~s~i~C~~Cg~~S~~~~~~sf~---~lI~~~~l~~~k~~~~~~SL~dlLk~~~~ee~~~Cd~~c~~C~kk~~kq~~I 1523 (1691)
+.+..++.|..-........-+.|. +.|+-. ...++.- -...+.+.+... -+ .-+-.....+...|
T Consensus 234 ~~~~~t~~~~e~e~~~~~~~~E~~~~L~c~i~~~-~~~~k~G-l~~~~~e~~~K~-------s~--~lgr~a~y~k~~~i 302 (473)
T KOG1872|consen 234 AEFSTTMSCSEGEDEGGGAGRELVDQLKCIINKT-VHDMRFG-LKSGLSEEIQKI-------SS--ILGRPAAYQKVMYI 302 (473)
T ss_pred cccccceeeccCcccccccccccccccceEEeee-echhhhh-hhhhhhhhhhcc-------Cc--ccCCChHHHHHhHh
Confidence 9999999998765544432112222 222211 1111100 001222222110 01 01111223356789
Q ss_pred cCCCCeEEEEEEeecCCC---cccccccccccccceecccccccc--------------------C-----------C--
Q 000306 1524 STPPHVFTTVLGWQNTCE---SFDDITATLAALSPEIDISILYRG--------------------L-----------D-- 1567 (1691)
Q Consensus 1524 ~rlP~VLiIhLkr~s~~~---~~~KI~~~v~sfP~~LDLs~f~~g--------------------~-----------~-- 1567 (1691)
+++|.+|+|++.||.... ...||.+.+. ||..||...+|.. . +
T Consensus 303 srlP~ylTvq~vrf~~k~k~~~~akil~~V~-fP~~ld~~d~ct~el~~k~~~~r~k~r~~edkk~~~~~~~k~~~~~~~ 381 (473)
T KOG1872|consen 303 SRLPEYLTVQEVRFFSKAKIMVVAKILNAVN-FPKDLDQQDLCTPELKKKLLCRRKKHRKVEDKKKEEDVMPKVKGAQER 381 (473)
T ss_pred hcCcccceEEEEEEEeccccchHHHHHHhcc-ChhhhhHHHhhCHHhhcCccchHHHHHHHHhcCCchhhcccccCcCcc
Confidence 999999999997665433 3356666555 8998888776620 0 0
Q ss_pred -----------------C-CCcEEEEEEEEEeC-----CeEEEEEEeCCCCcEEEEeCCcceEeCChHHHHhhhhcCCcc
Q 000306 1568 -----------------P-KRRHSLVSVVCYYG-----QHYHCFAYSHDQERWIMYDDKTVKVVGSWSDVLSMCERGHLQ 1624 (1691)
Q Consensus 1568 -----------------~-~~~Y~L~AVVvH~G-----GHY~AyVR~~~~~~W~~FNDs~Vt~Vsewe~Vls~~~~~~~q 1624 (1691)
. ...|+|.|||.|.| |||++++|.. .+.|++|||+.|+.|.. +.+++..+.+...
T Consensus 382 ~~~~~~e~~~~~~~~~s~~~g~y~l~~vithkgrss~sghy~aw~r~s-~~~w~~fdd~~vs~v~~-e~i~~lsgggd~~ 459 (473)
T KOG1872|consen 382 LKEVPLEGMYNKSGGKSRNSGLYDLQLVITHKGRSSKSGHYVAWNRVS-EDKWGHFDDDMVSFVLG-ETILSLSGGGDWH 459 (473)
T ss_pred cccccccchhccccccccccceeeeeEeeeccccccCCCcceEEEecc-CCceeeccccccccccc-cceeeecCCCccc
Confidence 0 13799999999999 9999999975 46999999999999876 6667777766644
Q ss_pred -cEEEEecc
Q 000306 1625 -PQEVVQDY 1632 (1691)
Q Consensus 1625 -PYILFYe~ 1632 (1691)
+|||.|.-
T Consensus 460 ~ayvllyk~ 468 (473)
T KOG1872|consen 460 SAYVLLYKA 468 (473)
T ss_pred hhhheeecc
Confidence 59999973
No 41
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.79 E-value=5.4e-19 Score=202.91 Aligned_cols=278 Identities=19% Similarity=0.196 Sum_probs=205.8
Q ss_pred ccccccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCccCCcHHHHHHHHHHHHHhhcCCCCCCcccCcHHHHHH
Q 000306 1299 YGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRIA 1378 (1691)
Q Consensus 1299 ~~~GL~NlG~~NTCYmNSVLQ~L~hip~FR~~ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~VsP~~L~~a 1378 (1691)
+..||.|+. ++-|.|++||+|.|.+++|++|+......+. -..+...|..+.+++|.... -...|+|.++..+
T Consensus 133 G~VGLnNik--~~dy~n~vl~~ls~v~PlRnyFl~~~n~~d~---~~~lv~rl~~l~rklw~~r~--fk~hvSphe~lqa 205 (442)
T KOG2026|consen 133 GFVGLNNIK--ANDYANAVLQALSHVVPLRNYFLLEENYFDN---LTELVQRLGELIRKLWNPRN--FKGHVSPHEFLQA 205 (442)
T ss_pred eeeccchhh--hHHHHHHHHHHHhccchhhhhhcccccccch---hHHHHHHHHHHHHHhcChhh--hcccCCHHHHHHH
Confidence 457999999 6999999999999999999999986432222 23577889999999997643 6779999999999
Q ss_pred HhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEeccCC
Q 000306 1379 LSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSC 1458 (1691)
Q Consensus 1379 L~~~~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~~s~~~~~~~SiI~~LF~G~l~s~i~C~~C 1458 (1691)
+... +.+.|..++|.|+.|||.|||+.||..+.... ...|||+..|+|.++....=..-
T Consensus 206 V~~~--s~k~f~i~~q~DpveFlswllntlhs~l~~~k-------------------~~~SIi~~~fqG~~ri~k~~~~~ 264 (442)
T KOG2026|consen 206 VMKL--SKKRFRIGQQSDPVEFLSWLLNTLHSDLRGSK-------------------KASSIIHKSFQGEVRIVKEKQGE 264 (442)
T ss_pred HHHH--hhhheecCCCCCHHHHHHHHHHHHHHHhCCCC-------------------CchhHhhHhhcceEEeeeecccc
Confidence 8765 34679999999999999999999999886532 23689999999999765443321
Q ss_pred Ccccc--cccccceeee---cchhhh-hhh--HhhcccCCHHHHHHHHhcccccccCCCCCCCCccceEEEEccCCCCeE
Q 000306 1459 GLESR--HLKYTSFFHN---INASAL-RTM--KVMCAESSLDELLNLVEMNHQLACDPGAGGCEKLNYIHHILSTPPHVF 1530 (1691)
Q Consensus 1459 g~~S~--~~~~~sf~~l---I~~~~l-~~~--k~~~~~~SL~dlLk~~~~ee~~~Cd~~c~~C~kk~~kq~~I~rlP~VL 1530 (1691)
...+. ..--.+|+.+ ++..++ .+. +...+...|.++|+.|.+...-.- -.-+-.++..+.++|++|
T Consensus 265 ~~~~~~~~i~~~~Fl~LtLDLP~~plfkD~~e~niiPQV~l~~lL~Kf~g~t~~e~------~~~~~~~rf~l~k~P~yl 338 (442)
T KOG2026|consen 265 ASENENKEISVMPFLYLTLDLPPPPLFKDVMEKNIIPQVALFDLLKKFDGETVTEV------VTPKLAMRFRLTKLPRYL 338 (442)
T ss_pred ccccccceEEEEeeEEEEecCCCCCcccchhhhcccccchHHHHHHHhcCceeeee------cchhhhhheeeecCCceE
Confidence 00111 1112245443 333322 221 234677889999999876432210 011112678899999999
Q ss_pred EEEEEeecCCCccccccccccccc-ceecccccccc----CCCCCcEEEEEEEEEeC--CeEEEEEEeCCCCcEEEEeCC
Q 000306 1531 TTVLGWQNTCESFDDITATLAALS-PEIDISILYRG----LDPKRRHSLVSVVCYYG--QHYHCFAYSHDQERWIMYDDK 1603 (1691)
Q Consensus 1531 iIhLkr~s~~~~~~KI~~~v~sfP-~~LDLs~f~~g----~~~~~~Y~L~AVVvH~G--GHY~AyVR~~~~~~W~~FNDs 1603 (1691)
|+|++||..+......+.++..|| .++|+.++... ...-+.|.|.|-++|.- |||...+++...++||..+|-
T Consensus 339 ifh~~rF~kNn~f~ekNpTl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~i~~~e~~~~riqi~~~~s~kW~eiqdl 418 (442)
T KOG2026|consen 339 IFHMKRFKKNNFFKEKNPTLVEFPYSEVDILHVLDRLKAVNHKVTQYSLVANAIHEDEDGNFRIQIYDNSSEKWYEIQDL 418 (442)
T ss_pred EEEeeeccccCcccccCCceeeccCCccchhhhhhhcccccCccccccchhhhhcCcccCceEEEEEeCCCcceEEeccc
Confidence 999999988777777888888899 67887765431 22337899999999987 999999999999999999999
Q ss_pred cceEeCC
Q 000306 1604 TVKVVGS 1610 (1691)
Q Consensus 1604 ~Vt~Vse 1610 (1691)
.|+....
T Consensus 419 ~v~e~~~ 425 (442)
T KOG2026|consen 419 HVTERLP 425 (442)
T ss_pred chhhhhh
Confidence 9998654
No 42
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.59 E-value=7.3e-15 Score=182.30 Aligned_cols=310 Identities=17% Similarity=0.207 Sum_probs=188.7
Q ss_pred cccccccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCccCCcHHHHHHHHHHHHHhhcCCCCCCcccCcHHHHH
Q 000306 1298 VYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRI 1377 (1691)
Q Consensus 1298 ~~~~GL~NlG~~NTCYmNSVLQ~L~hip~FR~~ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~VsP~~L~~ 1377 (1691)
+..+||.-.+. +-|.|++||.|+.+|+||..++. |.|..+.|+.|.|..||.+|..+ .+..+....|..
T Consensus 497 T~yaGLe~~i~--N~YcNamiQllyfl~~~r~~vl~-----H~C~~e~CL~CELGFLF~Ml~~S----~G~~Cqa~NFlr 565 (1118)
T KOG1275|consen 497 TTYAGLETDIP--NSYCNAMIQLLYFLPPIRSIVLR-----HICTKEFCLLCELGFLFTMLDSS----TGDPCQANNFLR 565 (1118)
T ss_pred ceeeccCCCCc--hHHHHHHHHHHHhccHHHHHHHc-----CccchhHHHHHHHHHHHHHHhhh----cCCccchhHHHH
Confidence 45678888884 89999999999999999999986 57778889999999999999865 345888889988
Q ss_pred HHhhhCCCC---ccchhh----------ccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCcccccc
Q 000306 1378 ALSNLYPDS---NFFQEA----------QMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSL 1444 (1691)
Q Consensus 1378 aL~~~~p~~---~~F~~g----------~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~~s~~~~~~~SiI~~L 1444 (1691)
+|+..--.. ..+... --|||.-|.....+...+ +.........+ ...+...+-+....+.+.
T Consensus 566 af~t~~~a~~LG~vl~d~~~~~~~~~~~liq~~~~~~~set~~~~d-~~~~~~~~~s~----~~~~~~~~vn~~~~l~q~ 640 (1118)
T KOG1275|consen 566 AFRTNPEASALGLVLSDTQISGTVNDDVLIQDAEGFISSETSRHLD-CQDCRGLQQSE----SVDGESFKVNYAPVLQQS 640 (1118)
T ss_pred HHhhChHhhhhcccccchhhccccchHHHhhhhhhccchhhhhhhh-HHHhhhhhhhh----cccCceeeecchhHHHHH
Confidence 887642111 011100 012333222222111111 00000000000 001112233346789999
Q ss_pred ccceEEEEEeccCCCcccccccccceeeecchhhhhhhHhhcccCCHHHHHHHHh---cccccccCCCCCCCCccceE--
Q 000306 1445 FGMDIFERMNCYSCGLESRHLKYTSFFHNINASALRTMKVMCAESSLDELLNLVE---MNHQLACDPGAGGCEKLNYI-- 1519 (1691)
Q Consensus 1445 F~G~l~s~i~C~~Cg~~S~~~~~~sf~~lI~~~~l~~~k~~~~~~SL~dlLk~~~---~ee~~~Cd~~c~~C~kk~~k-- 1519 (1691)
|+..+.....|..|+..+.+.. ......+................|.+.|+.-. ..-+-.|+ .|++....
T Consensus 641 F~~~~e~~~~Cg~C~~~~~~~k-~l~~~~lsyp~~~~id~~~~~~~F~~iL~R~l~l~kn~~~~C~----~C~k~ep~~q 715 (1118)
T KOG1275|consen 641 FCQEIEKSLRCGECGDEKQKSK-SLLRKVLSYPNVLLIDTLAKSNNFVEILKRSLSLFKNKQAWCE----TCTKPEPTSQ 715 (1118)
T ss_pred hhhHHHHhhhcccccchhhhhh-hhhheeecCCCccchhhcccccchHHHhhhhhhcccccccccc----cccCCCCccc
Confidence 9999999999999998876643 11111121111111111122356777776522 23346777 49888543
Q ss_pred EEEccCCCCeEEEEEEeecCC-----Ccccccccccccccceecccccc------c-----------cCCCC--CcEEEE
Q 000306 1520 HHILSTPPHVFTTVLGWQNTC-----ESFDDITATLAALSPEIDISILY------R-----------GLDPK--RRHSLV 1575 (1691)
Q Consensus 1520 q~~I~rlP~VLiIhLkr~s~~-----~~~~KI~~~v~sfP~~LDLs~f~------~-----------g~~~~--~~Y~L~ 1575 (1691)
+..+..+|.+|.|...-+... ..+.+..+.+ .+|..+-+...- . +.++. .+|+|.
T Consensus 716 ~~~vr~LPd~L~in~~~~~~~~~~~~a~q~~~~~~v-WLP~~~~~~~~k~~~~~v~~~s~~~~~~~~~~d~~~~~vYeL~ 794 (1118)
T KOG1275|consen 716 KKNVRSLPDCLSINTCLNVHELVDFWARQNKLLEDV-WLPEWFHMIISKNKAQLVSTISDLDVSPLPDYDEPSAVVYELD 794 (1118)
T ss_pred ccccccCcceeeeeeeccchhhhhhHHHhhcccccc-ccchheeEEEecccceeeeeeccccCCCCccccCCceEEEEee
Confidence 678999999999988321110 0112233332 477776655321 1 11222 589999
Q ss_pred EEEEEeC-----CeEEEEEEe--------CCCCcEEEEeCCcceEeCChHHHHhhhhcCCcccEEEEec
Q 000306 1576 SVVCYYG-----QHYHCFAYS--------HDQERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQEVVQD 1631 (1691)
Q Consensus 1576 AVVvH~G-----GHY~AyVR~--------~~~~~W~~FNDs~Vt~Vsewe~Vls~~~~~~~qPYILFYe 1631 (1691)
|+|+|.| +|.+++|+- +.+.+||.|||-.|++|++.|+| ..-+.. -.|.||||.
T Consensus 795 a~V~~I~d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~EAl-~~~~~W-KvP~Il~Y~ 861 (1118)
T KOG1275|consen 795 AMVHAIGDNENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEEEAL-HFDGPW-KVPAILYYC 861 (1118)
T ss_pred eEEEEeccCCCccceEEEEEccCcccccCcCcceeEEEcceeeeeCChHHhe-EeccCc-cCcEEEEEe
Confidence 9999998 799999983 23479999999999999985544 433333 359999993
No 43
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=98.22 E-value=2.8e-06 Score=95.64 Aligned_cols=243 Identities=17% Similarity=0.205 Sum_probs=126.4
Q ss_pred cCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCccCCcHHHHHHHHHHHHHhhcCCCCCCcccCcHHHHHHHhhhC
Q 000306 1304 KNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRIALSNLY 1383 (1691)
Q Consensus 1304 ~NlG~~NTCYmNSVLQ~L~hip~FR~~ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~VsP~~L~~aL~~~~ 1383 (1691)
+|.- |-|++.+||=+|.|+..+++.+-+... .+.+++..|..-+.+....-...+...+..... .+
T Consensus 6 ~N~~--aLCWLDciLsaLVh~~~Lk~~~~~~~~------~e~s~~~~L~~~Y~qa~~ll~~~q~~~~~~~~~----~~-- 71 (275)
T PF15499_consen 6 KNSN--ALCWLDCILSALVHLESLKNAVTELCS------KEESVFWRLFTKYNQANKLLHTCQLDGVKDDDC----KK-- 71 (275)
T ss_pred cCcc--ccHHHHHHHHHHHHHHHHHHHHhhhcc------ccccHHHHHHHHHHHHHHHHHhhhhcCCCCccc----cc--
Confidence 4665 799999999999999999998855321 122444444433332221100001111111110 00
Q ss_pred CCCccchhhccccHHHHHHHHHHHHHhhhCCCCCCCCCcccccccCCCCccCCCCccccccccceEEEEEeccCCCcccc
Q 000306 1384 PDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCYSCGLESR 1463 (1691)
Q Consensus 1384 p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~~~~s~~es~es~~~~s~~~~~~~SiI~~LF~G~l~s~i~C~~Cg~~S~ 1463 (1691)
.....=.+|...|..+-+.+-..+.+...-.-+ ..++-.+.---.-.....|..+|.-.+.-...|..||+...
T Consensus 72 -----~~~~~l~~ae~~Ln~vR~~iF~~LqPkL~C~LG-~~ESPVFAlPLLLk~d~~~E~lF~~sf~WeFeC~~Cg~~~~ 145 (275)
T PF15499_consen 72 -----VPSEILAKAETCLNEVRMEIFIQLQPKLRCKLG-DMESPVFALPLLLKLDPWIEKLFLYSFSWEFECSQCGHKYQ 145 (275)
T ss_pred -----CchHHHHHHHHHHHHHHHHHHHHhCccCCCCCC-CccCcHHHhHHHHhcchHHHhHhheeeEEEEEccccCChhh
Confidence 000111123333443333333333332110000 00100000000001245678999999999999999997643
Q ss_pred cc---cccceeeecchhhhhhhHhhcccCCHHHHHHHHhcccccccCCCCCCCCccceE-EEEccCCCCeEEEEEEeecC
Q 000306 1464 HL---KYTSFFHNINASALRTMKVMCAESSLDELLNLVEMNHQLACDPGAGGCEKLNYI-HHILSTPPHVFTTVLGWQNT 1539 (1691)
Q Consensus 1464 ~~---~~~sf~~lI~~~~l~~~k~~~~~~SL~dlLk~~~~ee~~~Cd~~c~~C~kk~~k-q~~I~rlP~VLiIhLkr~s~ 1539 (1691)
.. .-.+|-.+++.= .. |++ -..-. |..|+.+..+ +..+.+.|+||++|+.=
T Consensus 146 ~R~~K~L~TFtnv~pdw-----------hP----LnA---~h~~p----Cn~C~~ksQ~rkMvlekv~~vfmLHFVe--- 200 (275)
T PF15499_consen 146 NRCTKTLVTFTNVIPDW-----------HP----LNA---VHFGP----CNSCNSKSQRRKMVLEKVPPVFMLHFVE--- 200 (275)
T ss_pred hhheeeecccCCCCCCC-----------Cc----ccc---cccCC----CcccCChHHhHhhhhhcCchhhhhhhhc---
Confidence 21 011222222210 00 111 01123 4579888655 67889999999999821
Q ss_pred CCcccccccccccccceeccccccccCCCCCcEEEEEEEEEeC--CeEEEEEEeCCCCcEEEEeCCcce
Q 000306 1540 CESFDDITATLAALSPEIDISILYRGLDPKRRHSLVSVVCYYG--QHYHCFAYSHDQERWIMYDDKTVK 1606 (1691)
Q Consensus 1540 ~~~~~KI~~~v~sfP~~LDLs~f~~g~~~~~~Y~L~AVVvH~G--GHY~AyVR~~~~~~W~~FNDs~Vt 1606 (1691)
.+|.. |+..|-- .-++..|++.+||-+.- -|+++++++. +|.|..|||-+--
T Consensus 201 ------------GLP~n-dl~~ysF-~feg~~Y~Vt~VIQY~~~~~HFvtWi~~~-dGsWLecDDLkgp 254 (275)
T PF15499_consen 201 ------------GLPHN-DLQHYSF-HFEGCLYQVTSVIQYQANLNHFVTWIRDS-DGSWLECDDLKGP 254 (275)
T ss_pred ------------cCCcc-CCCccce-eecCeeEEEEEEEEEeccCceeEEEEEcC-CCCeEeeccCCCc
Confidence 12222 3322211 11356999999999887 8999999975 5789999998743
No 44
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=9.3e-05 Score=94.61 Aligned_cols=334 Identities=6% Similarity=-0.175 Sum_probs=213.9
Q ss_pred CCCccccccCCccccccccCCCCCCccccccccccchHHHHHHHHHHHhHHhhhhhhhhhhhhhhhhHHHHhhhcCcccc
Q 000306 825 QFGYEDTYSGMTSQLCDLESGEDDDWRNKDCLHQVDTCIEVAIQRQKEQLSVELSKIDARIMRNVTSMQQLELKLEPVSA 904 (1691)
Q Consensus 825 ~f~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~d~~v~~~i~~~k~~~~~~~~~id~~il~~~~~~~~l~~~l~~~s~ 904 (1691)
+|.+...++|...+..+..+.+. .|.+++.+|.. ....++..+...+.....++++--+++.+.++++..+..+.++
T Consensus 23 ~~~~~k~~s~sir~~~m~~p~~~-l~~~~~Seh~~--~~~~v~t~qs~~~le~~~l~~i~~~~~~~~~~~~~g~~l~~~~ 99 (806)
T KOG1887|consen 23 SFCDRKILSCSIRDWLMGFPVKH-LGQLEVSEHSL--DSRLVETPQSICFLENPELYQVLDFLKKIKCQRNDGTGLVCRA 99 (806)
T ss_pred hhhhhhhccCcccchhhcCCHHH-hccceeccccc--chhhhcccchhhhhccHHHHHHHHHHHhhccccccCCcccccc
Confidence 35555567888888888888888 99999999988 6677889999999999999999999999999999999999999
Q ss_pred cccchhhhHhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhhhccCCCCCCcccccchhhhhhhhhhhcccCCC
Q 000306 905 YDYQSILLPLVQSYLRAHLEDLAEKDATEKSDAAREAFLAELALDSKKVARGGSDISKHTNDKTKEKRKHKEYRKTKDSK 984 (1691)
Q Consensus 905 ~dyr~~ilpl~k~~l~~~L~~~~~~da~~~~~a~~~a~~a~l~~~~~k~~~~~~~~~~~~~~k~~~kk~~k~~r~~kd~k 984 (1691)
.||.-...+..++ +|+.++..++..+..=.++++..+-. .|..+..+++.+..+++...+.+.+...+
T Consensus 100 ~~~~~~~~~~~~k-----------~d~d~~~~~~~~~~rl~~~~~~~~~~-~g~~n~~~p~~~~~~~~~~~d~iiswl~~ 167 (806)
T KOG1887|consen 100 VYSFFSRTRVKSK-----------IDFDAQFSVLLLDKRLLKSKGNRFDD-EGTINVFDPEAHYAKTKSQLDDIISWLED 167 (806)
T ss_pred ccceeeeeecccc-----------cCCchhhhhhhhcchhhhccCccccC-CCcccccCchHhhhhhhhhcchhhhhhhh
Confidence 9999888876644 67777777777776667778888877 78888899988888888888888777766
Q ss_pred CCCCCCcceecccccCcccccccCCCCCCCCC-c----ccccCCcchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHhHHH
Q 000306 985 PVGGNERHIVHDKTADLVSFPVESDGDNPDSE-T----VVSANGDDLKLQEEEFRRKIELEAEERKLEETLAYQRRIENE 1059 (1691)
Q Consensus 985 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~s~~~~~~~~~ee~~~~~~~~~~ee~k~~~~~~~q~~~~~~ 1059 (1691)
..+.+... +.+.. ..+.++- . |...+.-.-..+++.+++-=..+++.++.-.+..+++|++|+
T Consensus 168 -~v~~d~~f--p~~~~---------~~nl~~~~~~~rav~~tc~~~~t~~~~~~~~~~~~~~~~~~~~k~~~ed~r~~n~ 235 (806)
T KOG1887|consen 168 -YVLENKIF--PRPIR---------EHNLDIWMAVLRAKQFTCRTLATKYAKKILVLKYDAALTDPENKCMREDERRKNK 235 (806)
T ss_pred -hhhccccC--Cchhh---------hccchhHHHHHHHHHHHHHHHhhHHHHHHHhhchhhhhcchhhhhcchhhhhhcc
Confidence 55455444 33321 1111100 0 011111111233444444444589999999999999999999
Q ss_pred HHHhhHHHhhhccccccCCcccccc-ccCcCCCCCCCcccccccccCCcccccccCCCCCCCC--CCCcccCCCccccCC
Q 000306 1060 AKLKHLAEQSKKSAQIFGENVAEGV-CDTYLGHGSNDLDMHKSMRLSSPVQLVSKDEFPHNFE--GTPVNTANGAAVPIR 1136 (1691)
Q Consensus 1060 ~k~k~~~~q~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 1136 (1691)
.+.. .++..+ .....++.. ...+ .-+..+.+-++ ..+.....-+..+. +--.+. .+..+.+.
T Consensus 236 ~~dq-----~~~y~~-~~~~~~qe~~~~~~----~~~~~~~~~v~----d~~~~~s~p~~~~~~~~~c~N~-~~~~~~~~ 300 (806)
T KOG1887|consen 236 PEDQ-----WLEYEQ-LLLDSCQEQQIEQS----LQTKLFLCAVR----DVLEGASSPTFAFADASDCLNL-IREHKQEK 300 (806)
T ss_pred hHHH-----HHHHHH-hchHHHHHHHHHhh----hhhhhHHHHHH----hhhccccCCCCCccchHhhcch-hhhccccc
Confidence 8833 323222 122222211 0000 00000000000 01222222222221 122232 34444444
Q ss_pred CCCCCCCcccccccccccccCCCCCCCCCCCCCCCccccCCccccccCCCccccccccccCcccccc
Q 000306 1137 SSPTSSFQNINTAHHLSIKQGLPNGETPEDGFLPTDRRTGRRGRRHRSSNRSQDWKNQALSSEKENI 1203 (1691)
Q Consensus 1137 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~k~~~~s~~~~n~ 1203 (1691)
.-.+...-.. ..+.+.+..|++....-++.-+....++..+|.+..+..+...++-.-...+.+
T Consensus 301 ~~~~~~~i~~---l~s~s~~~v~~~~s~il~~~~sr~~l~~~~~r~~~~~~~s~~~~~~~~~~~~e~ 364 (806)
T KOG1887|consen 301 DDAVLPSIDL---LKSVSTQKVLLKDSKILLISESRISLLNSLSRTSTFDNRSYDLRLKKPFLLDEI 364 (806)
T ss_pred cceecCCcch---hhhhhhheeccchhhhhccchhhhhhhhcccccccccchhhhhhhcchhhhhhh
Confidence 4444333332 667777788888888888878888888888998888777777775544444433
No 45
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.86 E-value=0.0094 Score=63.73 Aligned_cols=93 Identities=14% Similarity=0.006 Sum_probs=84.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHH
Q 000306 63 RALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFA 142 (1691)
Q Consensus 63 ~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia 142 (1691)
.+..++..|++.+|+.....++...|.+ +.+++..|.++..+.. ...|+.+|.+|..+.|+....-
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~g~-----------~~~A~~~y~~Al~l~p~~~~a~ 95 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQPWS---WRAHIALAGTWMMLKE-----------YTTAINFYGHALMLDASHPEPV 95 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHHhh-----------HHHHHHHHHHHHhcCCCCcHHH
Confidence 4678899999999999999999999999 8999999999998753 2679999999999999999999
Q ss_pred HHHHHHHHHHhccCccHHHHHHHHHHhhccc
Q 000306 143 HFYANLLYEAANDGKEYEEVVQECERALAIE 173 (1691)
Q Consensus 143 ~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~ 173 (1691)
..+|.++..+ |.|++|...+.+||.+.
T Consensus 96 ~~lg~~l~~~----g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 96 YQTGVCLKMM----GEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHHHc----CCHHHHHHHHHHHHHhC
Confidence 9999999999 68999999999999973
No 46
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.65 E-value=0.0097 Score=73.09 Aligned_cols=98 Identities=19% Similarity=0.240 Sum_probs=85.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHH
Q 000306 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEF 141 (1691)
Q Consensus 62 ~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~i 141 (1691)
.+|..++..|++.+|++...+.+...|+. +.++...|.+++.+.. +..|+..+.+|..|.|+....
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~---~~a~~~~a~~~~~~g~-----------~~eAl~~~~~Al~l~P~~~~a 72 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPNN---AELYADRAQANIKLGN-----------FTEAVADANKAIELDPSLAKA 72 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCcCCHHH
Confidence 34678889999999999999999999999 8888888888887642 368999999999999999999
Q ss_pred HHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCc
Q 000306 142 AHFYANLLYEAANDGKEYEEVVQECERALAIENPIDP 178 (1691)
Q Consensus 142 a~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~~P~DP 178 (1691)
...+|.+++.+ |.|++|...+.+||.+. |.+|
T Consensus 73 ~~~lg~~~~~l----g~~~eA~~~~~~al~l~-P~~~ 104 (356)
T PLN03088 73 YLRKGTACMKL----EEYQTAKAALEKGASLA-PGDS 104 (356)
T ss_pred HHHHHHHHHHh----CCHHHHHHHHHHHHHhC-CCCH
Confidence 99999999999 68999999999999963 4444
No 47
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.95 E-value=0.086 Score=62.19 Aligned_cols=99 Identities=9% Similarity=0.111 Sum_probs=77.9
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCC
Q 000306 58 KLECERALTA-LRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSP 136 (1691)
Q Consensus 58 r~e~~~al~~-~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P 136 (1691)
...-+.|+.+ +..|++++|+...+.++..||+|.+++.+|+..|.+++... + ...|+..|...+...|
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g----~-------~~~A~~~f~~vv~~yP 211 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKG----K-------KDDAAYYFASVVKNYP 211 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcC----C-------HHHHHHHHHHHHHHCC
Confidence 4556677777 56799999999999999999999888999999999999764 2 2589999999999999
Q ss_pred ChHHHHHHH---HHHHHHHhccCccHHHHHHHHHHhhc
Q 000306 137 HSVEFAHFY---ANLLYEAANDGKEYEEVVQECERALA 171 (1691)
Q Consensus 137 ~sl~ia~~~---A~~L~~~~~~~~~Y~ea~~e~~RaL~ 171 (1691)
++....-.+ |..+..+ +.|++|...+.+.+.
T Consensus 212 ~s~~~~dAl~klg~~~~~~----g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 212 KSPKAADAMFKVGVIMQDK----GDTAKAKAVYQQVIK 245 (263)
T ss_pred CCcchhHHHHHHHHHHHHc----CCHHHHHHHHHHHHH
Confidence 986444333 4445554 678888877766655
No 48
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=95.86 E-value=0.11 Score=53.75 Aligned_cols=95 Identities=20% Similarity=0.211 Sum_probs=82.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChH
Q 000306 60 ECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSV 139 (1691)
Q Consensus 60 e~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl 139 (1691)
-...+..++..|++.+|+...+.++..+|.. +.++...|.+++.+.. ...|+.++.++..+.|+..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~-----------~~~A~~~~~~~~~~~p~~~ 85 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPYN---SRYWLGLAACCQMLKE-----------YEEAIDAYALAAALDPDDP 85 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhcCCCCh
Confidence 4566788889999999999999999999998 7888888888887642 2578889999999999999
Q ss_pred HHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000306 140 EFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1691)
Q Consensus 140 ~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I 172 (1691)
.....+|..+... |.|++|+....+++.+
T Consensus 86 ~~~~~la~~~~~~----g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 86 RPYFHAAECLLAL----GEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHHh
Confidence 9999999998888 6899999999999996
No 49
>PRK11189 lipoprotein NlpI; Provisional
Probab=95.51 E-value=0.075 Score=63.63 Aligned_cols=100 Identities=18% Similarity=0.079 Sum_probs=86.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHH
Q 000306 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVE 140 (1691)
Q Consensus 61 ~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ 140 (1691)
...+.-..+.|++.+|+....+....+|+. +.+++..|.++..... ...|+++|.+|.++.|+...
T Consensus 68 ~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~~~~~g~-----------~~~A~~~~~~Al~l~P~~~~ 133 (296)
T PRK11189 68 YERGVLYDSLGLRALARNDFSQALALRPDM---ADAYNYLGIYLTQAGN-----------FDAAYEAFDSVLELDPTYNY 133 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHHhCCCCHH
Confidence 345566788899999999999999999999 8999999999887652 25899999999999999999
Q ss_pred HHHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCcc
Q 000306 141 FAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPA 179 (1691)
Q Consensus 141 ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~~P~DPa 179 (1691)
....+|.+++.. |.|++|...+.+++.+ +|.||.
T Consensus 134 a~~~lg~~l~~~----g~~~eA~~~~~~al~~-~P~~~~ 167 (296)
T PRK11189 134 AYLNRGIALYYG----GRYELAQDDLLAFYQD-DPNDPY 167 (296)
T ss_pred HHHHHHHHHHHC----CCHHHHHHHHHHHHHh-CCCCHH
Confidence 989999999887 6899999999999986 677773
No 50
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.11 E-value=0.23 Score=49.66 Aligned_cols=97 Identities=15% Similarity=0.160 Sum_probs=78.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCCh--
Q 000306 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHS-- 138 (1691)
Q Consensus 61 ~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~s-- 138 (1691)
...+..+.+.|++.+|++..+.++..+|++...+-+++..|.++++... ...|+.+|.++..+.|+.
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------~~~A~~~~~~~~~~~p~~~~ 74 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGK-----------YADAAKAFLAVVKKYPKSPK 74 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhcc-----------HHHHHHHHHHHHHHCCCCCc
Confidence 4567788899999999999999999999875445677778888776642 257999999999999996
Q ss_pred -HHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000306 139 -VEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1691)
Q Consensus 139 -l~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I 172 (1691)
..+...+|.++..+ +.|++|.....+++..
T Consensus 75 ~~~~~~~~~~~~~~~----~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 75 APDALLKLGMSLQEL----GDKEKAKATLQQVIKR 105 (119)
T ss_pred ccHHHHHHHHHHHHh----CChHHHHHHHHHHHHH
Confidence 45566677777776 6889999888888886
No 51
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=94.85 E-value=0.13 Score=63.88 Aligned_cols=101 Identities=27% Similarity=0.357 Sum_probs=87.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHH
Q 000306 63 RALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFA 142 (1691)
Q Consensus 63 ~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia 142 (1691)
.|+..++.|..++|+.....|+..+|+. +....+.|.|..++-+. ..|.+.+.+|..|.|++...=
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~~P~N---~~~~~~~~~i~~~~nk~-----------~~A~e~~~kal~l~P~~~~l~ 377 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAAQPDN---PYYLELAGDILLEANKA-----------KEAIERLKKALALDPNSPLLQ 377 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCh-----------HHHHHHHHHHHhcCCCccHHH
Confidence 4788999999999999999999999999 88889999999877432 579999999999999999999
Q ss_pred HHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCccccc
Q 000306 143 HFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKES 182 (1691)
Q Consensus 143 ~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~~P~DPa~~~ 182 (1691)
.-+|.+|+.. +.+++|+++.+|++. ..|.||-.-+
T Consensus 378 ~~~a~all~~----g~~~eai~~L~~~~~-~~p~dp~~w~ 412 (484)
T COG4783 378 LNLAQALLKG----GKPQEAIRILNRYLF-NDPEDPNGWD 412 (484)
T ss_pred HHHHHHHHhc----CChHHHHHHHHHHhh-cCCCCchHHH
Confidence 9999999999 578899999999887 4566665443
No 52
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=94.78 E-value=0.23 Score=56.17 Aligned_cols=98 Identities=17% Similarity=0.138 Sum_probs=79.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHH
Q 000306 65 LTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHF 144 (1691)
Q Consensus 65 l~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~ 144 (1691)
.-+...|++++|+...+....-.|+. +-++...|.+.+...... ....|+..+.+|..+.|+.+..-..
T Consensus 81 ~~~~~~g~~~~A~~a~~~Al~l~P~~---~~~~~~lA~aL~~~~g~~--------~~~~A~~~l~~al~~dP~~~~al~~ 149 (198)
T PRK10370 81 EYYLWRNDYDNALLAYRQALQLRGEN---AELYAALATVLYYQAGQH--------MTPQTREMIDKALALDANEVTALML 149 (198)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCC--------CcHHHHHHHHHHHHhCCCChhHHHH
Confidence 34668899999999999999888988 777777777654332111 1257899999999999999999999
Q ss_pred HHHHHHHHhccCccHHHHHHHHHHhhcccCCCC
Q 000306 145 YANLLYEAANDGKEYEEVVQECERALAIENPID 177 (1691)
Q Consensus 145 ~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~~P~D 177 (1691)
+|..+++. |.|++|+.-..++|....|.|
T Consensus 150 LA~~~~~~----g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 150 LASDAFMQ----ADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHc----CCHHHHHHHHHHHHhhCCCCc
Confidence 99999998 689999999999999876644
No 53
>PRK12370 invasion protein regulator; Provisional
Probab=94.57 E-value=0.14 Score=66.60 Aligned_cols=94 Identities=20% Similarity=0.211 Sum_probs=68.7
Q ss_pred HcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHH
Q 000306 69 RRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANL 148 (1691)
Q Consensus 69 ~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~ 148 (1691)
..|++.+|+..+++.....|++ +.+|...|.++.... + ...|+.+|.+|..+.|++...-..+|.+
T Consensus 316 ~~~~~~~A~~~~~~Al~ldP~~---~~a~~~lg~~~~~~g----~-------~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 381 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELDHNN---PQALGLLGLINTIHS----E-------YIVGSLLFKQANLLSPISADIKYYYGWN 381 (553)
T ss_pred cchHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcc----C-------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4456778888888888777888 777777787776542 1 2467788888888888888777777777
Q ss_pred HHHHhccCccHHHHHHHHHHhhcccCCCCcccc
Q 000306 149 LYEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1691)
Q Consensus 149 L~~~~~~~~~Y~ea~~e~~RaL~I~~P~DPa~~ 181 (1691)
++.. |.|++|...+.+|+.+ +|.+|..+
T Consensus 382 l~~~----G~~~eAi~~~~~Al~l-~P~~~~~~ 409 (553)
T PRK12370 382 LFMA----GQLEEALQTINECLKL-DPTRAAAG 409 (553)
T ss_pred HHHC----CCHHHHHHHHHHHHhc-CCCChhhH
Confidence 7776 5778888888888877 46666543
No 54
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.52 E-value=0.23 Score=56.64 Aligned_cols=106 Identities=27% Similarity=0.300 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCC
Q 000306 58 KLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPH 137 (1691)
Q Consensus 58 r~e~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~ 137 (1691)
..-+.-++..++.|+...|.+-+++....-|++ .++|.+.++++..+. ....|-+.|++|..|.|+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~---~~a~~~~A~~Yq~~G-----------e~~~A~e~YrkAlsl~p~ 101 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSY---YLAHLVRAHYYQKLG-----------ENDLADESYRKALSLAPN 101 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcC-----------ChhhHHHHHHHHHhcCCC
Confidence 334567799999999999999999999777999 999999999998775 235789999999999999
Q ss_pred hHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhccc---CCCCcccc
Q 000306 138 SVEFAHFYANLLYEAANDGKEYEEVVQECERALAIE---NPIDPAKE 181 (1691)
Q Consensus 138 sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~---~P~DPa~~ 181 (1691)
.=++--=+.--|..- |.|++|++...+|+.-| .|.|+.+|
T Consensus 102 ~GdVLNNYG~FLC~q----g~~~eA~q~F~~Al~~P~Y~~~s~t~eN 144 (250)
T COG3063 102 NGDVLNNYGAFLCAQ----GRPEEAMQQFERALADPAYGEPSDTLEN 144 (250)
T ss_pred ccchhhhhhHHHHhC----CChHHHHHHHHHHHhCCCCCCcchhhhh
Confidence 988777777656555 59999999999999873 46666666
No 55
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=94.48 E-value=0.025 Score=41.04 Aligned_cols=24 Identities=21% Similarity=0.544 Sum_probs=20.6
Q ss_pred EecccchhccCChhHHHHhhhhhh
Q 000306 389 WVCCRCNEKFADSESHMHHVVQQH 412 (1691)
Q Consensus 389 WiCp~C~~kF~d~~~~~~Hl~~~H 412 (1691)
|.|+.|++.|.+...++.|+...|
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred CCCcCCCCcCCcHHHHHHHHHhhC
Confidence 899999999999999999998776
No 56
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=94.45 E-value=0.48 Score=43.28 Aligned_cols=92 Identities=21% Similarity=0.233 Sum_probs=75.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHH
Q 000306 63 RALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFA 142 (1691)
Q Consensus 63 ~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia 142 (1691)
.+......|++.+|+...++.....|.. +.++...|.+++... -...|++++.++..+.|......
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~ 71 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPDN---ADAYYNLAAAYYKLG-----------KYEEALEDYEKALELDPDNAKAY 71 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhCCCcchhHH
Confidence 4556677899999999999999888888 677888888887653 22578899999999999999888
Q ss_pred HHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000306 143 HFYANLLYEAANDGKEYEEVVQECERALAI 172 (1691)
Q Consensus 143 ~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I 172 (1691)
...|.+++.. +.|++|...+.+++.+
T Consensus 72 ~~~~~~~~~~----~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 72 YNLGLAYYKL----GKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHH----HhHHHHHHHHHHHHcc
Confidence 8888888888 5789998888888765
No 57
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.38 E-value=0.053 Score=70.18 Aligned_cols=109 Identities=16% Similarity=0.102 Sum_probs=61.2
Q ss_pred ccCCCCCCcccchHHHHHHHhhHHHHHHHhccCCCCCCc--------cCCcHHHHHHHHHH---HHHhhcCCCCCCcccC
Q 000306 1303 LKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIH--------VGEPCVVCALYEIF---TALSIASTDTRKEAVA 1371 (1691)
Q Consensus 1303 L~NlG~~NTCYmNSVLQ~L~hip~FR~~ll~~~~~~~~~--------~~~~cv~~aL~~LF---~~L~~ss~~~~~~~Vs 1371 (1691)
|.|.| |+||.|++||+|..+|+|+-.+.+........ .......+..+.+- ........ ..+.+.
T Consensus 34 l~n~g--n~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 109 (587)
T KOG1864|consen 34 LVNTG--NSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKNSS--SNESFN 109 (587)
T ss_pred EeecC--CchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhccCC--cccccc
Confidence 99999 79999999999999999998877643211111 11111111111111 11111100 111222
Q ss_pred c--HHHHHHHhhhCCCCccchhhccccHHHHHHHHHHHHHhhhCCC
Q 000306 1372 P--TSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPG 1415 (1691)
Q Consensus 1372 P--~~L~~aL~~~~p~~~~F~~g~QQDA~EFL~~LLD~Lheel~~~ 1415 (1691)
+ ..+...+........-|....|+||++|+.-|+-.+...+...
T Consensus 110 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~~~~ 155 (587)
T KOG1864|consen 110 LSVTQLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDVMGVS 155 (587)
T ss_pred chHHHHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhhcccC
Confidence 2 3333333332222233777899999999999998888765443
No 58
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=94.21 E-value=0.2 Score=66.67 Aligned_cols=107 Identities=10% Similarity=0.007 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhh
Q 000306 56 AIKLECERALTALRRGN-HKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAEL 134 (1691)
Q Consensus 56 ~ir~e~~~al~~~~~G~-~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L 134 (1691)
.+-.-+++++..+.+-+ ..+||.++.+++.++|.. +-+|++-|.+..++.+ +..|+..+..+..+
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~La~i~~~~g~-----------~~ea~~~l~~~~~~ 115 (694)
T PRK15179 50 ELLQQARQVLERHAAVHKPAAALPELLDYVRRYPHT---ELFQVLVARALEAAHR-----------SDEGLAVWRGIHQR 115 (694)
T ss_pred HHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhcccc---HHHHHHHHHHHHHcCC-----------cHHHHHHHHHHHhh
Confidence 34455566665555443 678899999999999999 8999999999887753 24566677777777
Q ss_pred CCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCcccc
Q 000306 135 SPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1691)
Q Consensus 135 ~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~~P~DPa~~ 181 (1691)
+|+.+...+-+|..|+.. +.|++|+.+|.|+|.+. |..+..+
T Consensus 116 ~Pd~~~a~~~~a~~L~~~----~~~eeA~~~~~~~l~~~-p~~~~~~ 157 (694)
T PRK15179 116 FPDSSEAFILMLRGVKRQ----QGIEAGRAEIELYFSGG-SSSAREI 157 (694)
T ss_pred CCCcHHHHHHHHHHHHHh----ccHHHHHHHHHHHhhcC-CCCHHHH
Confidence 777777777777777777 56777777777777752 4444333
No 59
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=94.19 E-value=0.1 Score=47.49 Aligned_cols=62 Identities=15% Similarity=0.238 Sum_probs=54.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCCh
Q 000306 63 RALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHS 138 (1691)
Q Consensus 63 ~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~s 138 (1691)
.|..++..|++++|++..+.+...+|++ +.+++..|.+++.+.. ...|+..|.++..+.|+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~---~~a~~~lg~~~~~~g~-----------~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDN---PEAWYLLGRILYQQGR-----------YDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTH---HHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHCcCC
Confidence 5778899999999999999999999999 9999999999997752 257889999999999985
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=94.10 E-value=0.16 Score=66.21 Aligned_cols=99 Identities=13% Similarity=0.044 Sum_probs=80.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHH
Q 000306 66 TALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFY 145 (1691)
Q Consensus 66 ~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~ 145 (1691)
-+...|++++|++..++.....|++ +.+|+..|.++..+.+ ...|+..+.+|.++.|+........
T Consensus 347 ~~~~~g~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~l~~~G~-----------~~eAi~~~~~Al~l~P~~~~~~~~~ 412 (553)
T PRK12370 347 INTIHSEYIVGSLLFKQANLLSPIS---ADIKYYYGWNLFMAGQ-----------LEEALQTINECLKLDPTRAAAGITK 412 (553)
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHhcCCCChhhHHHH
Confidence 4467899999999999999999999 8888888988886642 2579999999999999988776666
Q ss_pred HHHHHHHhccCccHHHHHHHHHHhhcccCCCCccccc
Q 000306 146 ANLLYEAANDGKEYEEVVQECERALAIENPIDPAKES 182 (1691)
Q Consensus 146 A~~L~~~~~~~~~Y~ea~~e~~RaL~I~~P~DPa~~~ 182 (1691)
+.+++.. +.|++|...+.+++....|.+|..+.
T Consensus 413 ~~~~~~~----g~~eeA~~~~~~~l~~~~p~~~~~~~ 445 (553)
T PRK12370 413 LWITYYH----TGIDDAIRLGDELRSQHLQDNPILLS 445 (553)
T ss_pred HHHHHhc----cCHHHHHHHHHHHHHhccccCHHHHH
Confidence 6666665 57999999999999887777777543
No 61
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=94.05 E-value=0.38 Score=64.03 Aligned_cols=124 Identities=10% Similarity=-0.027 Sum_probs=93.0
Q ss_pred HHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHH
Q 000306 67 ALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYA 146 (1691)
Q Consensus 67 ~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A 146 (1691)
..+.|++++|+...+.++.--|.. .-+++.-+++..+ ..++..|+..+.++....|++.+.-..+|
T Consensus 96 ~~~~g~~~ea~~~l~~~~~~~Pd~---~~a~~~~a~~L~~-----------~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 96 LEAAHRSDEGLAVWRGIHQRFPDS---SEAFILMLRGVKR-----------QQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred HHHcCCcHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHH-----------hccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 456788999998888888888887 5555555555553 34678999999999999999999999999
Q ss_pred HHHHHHhccCccHHHHHHHHHHhhcccCCCCccccccchhhhHhhhchHHHHHHHHHHHHHHHHhhh
Q 000306 147 NLLYEAANDGKEYEEVVQECERALAIENPIDPAKESLQDESQQKILTADARIAHVQSELRSLIQKSN 213 (1691)
Q Consensus 147 ~~L~~~~~~~~~Y~ea~~e~~RaL~I~~P~DPa~~~v~~~~~~~~~~~~~rv~~~~~el~~li~~a~ 213 (1691)
.+|..+ |.|++|..-+.|++. ++|.+|... +.++..... ..+.+.+...++.++....
T Consensus 162 ~~l~~~----g~~~~A~~~y~~~~~-~~p~~~~~~-~~~a~~l~~---~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 162 KSWDEI----GQSEQADACFERLSR-QHPEFENGY-VGWAQSLTR---RGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHh----cchHHHHHHHHHHHh-cCCCcHHHH-HHHHHHHHH---cCCHHHHHHHHHHHHHhhC
Confidence 999999 689999999999999 778555544 555555432 2233555555666555433
No 62
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=93.62 E-value=0.045 Score=39.90 Aligned_cols=23 Identities=22% Similarity=0.606 Sum_probs=21.3
Q ss_pred EecccchhccCChhHHHHhhhhhh
Q 000306 389 WVCCRCNEKFADSESHMHHVVQQH 412 (1691)
Q Consensus 389 WiCp~C~~kF~d~~~~~~Hl~~~H 412 (1691)
|.|+.|++.|.+...|..|+.. |
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~-H 23 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRR-H 23 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHH-H
T ss_pred CCCCCCCCccCCHHHHHHHHhH-C
Confidence 6899999999999999999976 5
No 63
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=93.11 E-value=0.62 Score=61.49 Aligned_cols=112 Identities=14% Similarity=0.215 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchh----hHHHHHhhchhhHHH-----hhccC-----------ChhH
Q 000306 57 IKLECERALTALRRGNHKKALRLMKELSSRHENSAY----VALIHRVQGTVCVKV-----ASIID-----------DLNS 116 (1691)
Q Consensus 57 ir~e~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~----~a~~h~lqG~i~~~~-----a~~~~-----------~~~~ 116 (1691)
++.=-..|.-++.+|+..+|.++.+|.+..-|.-.. -+.++..+|.+--.+ |+-+. +-..
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 445555678889999999999999999977776521 245555555543322 22111 1222
Q ss_pred HHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000306 117 KQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1691)
Q Consensus 117 k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I 172 (1691)
++-+...|.-||++|..+.|...++-.-++.++-.+ |.+..|+.=..+.+..
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~----G~~~~Am~~f~~l~~~ 270 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKT----GDLKRAMETFLQLLQL 270 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh----ChHHHHHHHHHHHHhh
Confidence 344788999999999999999999999999999999 5778887555555543
No 64
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=92.73 E-value=0.45 Score=63.32 Aligned_cols=101 Identities=20% Similarity=0.231 Sum_probs=79.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHH
Q 000306 65 LTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHF 144 (1691)
Q Consensus 65 l~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~ 144 (1691)
..+.+.|++.+|+....+....+|++ +.+++..|.+++....- +++ + ..|+..|.+|..+.|+....-..
T Consensus 220 ~~l~~~g~~~eA~~~~~~al~~~p~~---~~~~~~Lg~~l~~~G~~-~eA--~----~~A~~~~~~Al~l~P~~~~a~~~ 289 (656)
T PRK15174 220 DTLCAVGKYQEAIQTGESALARGLDG---AALRRSLGLAYYQSGRS-REA--K----LQAAEHWRHALQFNSDNVRIVTL 289 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCc-hhh--H----HHHHHHHHHHHhhCCCCHHHHHH
Confidence 34566788888888888888888888 77777778777765432 111 0 35899999999999999999999
Q ss_pred HHHHHHHHhccCccHHHHHHHHHHhhcccCCCCccc
Q 000306 145 YANLLYEAANDGKEYEEVVQECERALAIENPIDPAK 180 (1691)
Q Consensus 145 ~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~~P~DPa~ 180 (1691)
+|.+|+.. +.|++|...+.+++.+ .|.+|..
T Consensus 290 lg~~l~~~----g~~~eA~~~l~~al~l-~P~~~~a 320 (656)
T PRK15174 290 YADALIRT----GQNEKAIPLLQQSLAT-HPDLPYV 320 (656)
T ss_pred HHHHHHHC----CCHHHHHHHHHHHHHh-CCCCHHH
Confidence 99999998 6899999999999986 4665543
No 65
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=92.68 E-value=1.2 Score=58.74 Aligned_cols=107 Identities=14% Similarity=0.222 Sum_probs=74.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhh------------ccCChhHHHH--------
Q 000306 60 ECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS------------IIDDLNSKQR-------- 119 (1691)
Q Consensus 60 e~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~------------~~~~~~~k~~-------- 119 (1691)
-+..+.-+...|++.+|+...++.....|+. +.+++..|.+++.... .+.+......
T Consensus 368 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 368 YIKRASMNLELGDPDKAEEDFDKALKLNSED---PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence 3566677788899999999888888888888 7778888888776531 1122111111
Q ss_pred ---HHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhccc
Q 000306 120 ---HLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIE 173 (1691)
Q Consensus 120 ---~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~ 173 (1691)
-+..|+..|.+|..+.|+..+.-..+|.++... |.|++|...+.+|+.+.
T Consensus 445 ~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~----g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQ----NKFDEAIEKFDTAIELE 497 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc----cCHHHHHHHHHHHHhcC
Confidence 135677777777777777777777777777766 46777877777777774
No 66
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=92.63 E-value=0.36 Score=64.29 Aligned_cols=99 Identities=16% Similarity=0.136 Sum_probs=80.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHH
Q 000306 64 ALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAH 143 (1691)
Q Consensus 64 al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~ 143 (1691)
++..++.|++.+|+..+....+.+|.. +-+++..|...... .+. ..|+..|.++..+.|+..+.-.
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~p~~---~~~l~~l~~~~l~~----g~~-------~~A~~~l~~~l~~~P~~~~a~~ 114 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTAKNG---RDLLRRWVISPLAS----SQP-------DAVLQVVNKLLAVNVCQPEDVL 114 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhCCCc---hhHHHHHhhhHhhc----CCH-------HHHHHHHHHHHHhCCCChHHHH
Confidence 477889999999999999999999999 78888888555422 222 4788999999999999988888
Q ss_pred HHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCcccc
Q 000306 144 FYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1691)
Q Consensus 144 ~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~~P~DPa~~ 181 (1691)
.+|.++... +.|++|...+.+|+.+ +|.+|..+
T Consensus 115 ~la~~l~~~----g~~~~Ai~~l~~Al~l-~P~~~~a~ 147 (656)
T PRK15174 115 LVASVLLKS----KQYATVADLAEQAWLA-FSGNSQIF 147 (656)
T ss_pred HHHHHHHHc----CCHHHHHHHHHHHHHh-CCCcHHHH
Confidence 888888887 5789999999999987 56665544
No 67
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=92.60 E-value=1.2 Score=47.52 Aligned_cols=92 Identities=25% Similarity=0.325 Sum_probs=70.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChH--
Q 000306 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSV-- 139 (1691)
Q Consensus 62 ~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl-- 139 (1691)
+.++.....|+..++-+.+++|+..||++.++.++....|.+++... + +..|...|..+..-.|+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g----~-------~~~A~~~l~~~~~~~~d~~l~ 84 (145)
T PF09976_consen 16 EQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQG----D-------YDEAKAALEKALANAPDPELK 84 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCC----C-------HHHHHHHHHHHHhhCCCHHHH
Confidence 34566667899999999999999999999888888888888888653 2 2467788888887776542
Q ss_pred HHHH-HHHHHHHHHhccCccHHHHHHHHHH
Q 000306 140 EFAH-FYANLLYEAANDGKEYEEVVQECER 168 (1691)
Q Consensus 140 ~ia~-~~A~~L~~~~~~~~~Y~ea~~e~~R 168 (1691)
.+|. .+|.+++.. +.|++|......
T Consensus 85 ~~a~l~LA~~~~~~----~~~d~Al~~L~~ 110 (145)
T PF09976_consen 85 PLARLRLARILLQQ----GQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHHHHHc----CCHHHHHHHHHh
Confidence 3343 368888877 689999888744
No 68
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=92.56 E-value=0.79 Score=50.47 Aligned_cols=97 Identities=21% Similarity=0.304 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCC
Q 000306 58 KLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPH 137 (1691)
Q Consensus 58 r~e~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~ 137 (1691)
..-..-+..++..|++.+|+...+++...+|++ +.++...|.+++... +. ..|+..|.++..+.|+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~----~~-------~~A~~~~~~al~~~~~ 97 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPDD---YLAYLALALYYQQLG----EL-------EKAEDSFRRALTLNPN 97 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcC----CH-------HHHHHHHHHHHhhCCC
Confidence 344455778889999999999999999999998 788888888887653 22 4789999999999999
Q ss_pred hHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000306 138 SVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1691)
Q Consensus 138 sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I 172 (1691)
.......+|..++.. +.|++|..-+.+++..
T Consensus 98 ~~~~~~~~~~~~~~~----g~~~~A~~~~~~~~~~ 128 (234)
T TIGR02521 98 NGDVLNNYGTFLCQQ----GKYEQAMQQFEQAIED 128 (234)
T ss_pred CHHHHHHHHHHHHHc----ccHHHHHHHHHHHHhc
Confidence 988888888888877 6899999999999875
No 69
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=92.50 E-value=0.43 Score=44.18 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=61.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHH
Q 000306 66 TALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFY 145 (1691)
Q Consensus 66 ~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~ 145 (1691)
.+++.++..+|++.++.++.-+|.+ +.++...|.+++.+.. ...|+..+.++..+.|+........
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~g~-----------~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDD---PELWLQRARCLFQLGR-----------YEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCccc---chhhHHHHHHHHHhcc-----------HHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 4678899999999999999999999 9999999999998753 2689999999999999999888877
Q ss_pred HHH
Q 000306 146 ANL 148 (1691)
Q Consensus 146 A~~ 148 (1691)
|++
T Consensus 70 a~l 72 (73)
T PF13371_consen 70 AML 72 (73)
T ss_pred Hhc
Confidence 754
No 70
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=91.90 E-value=0.53 Score=43.18 Aligned_cols=65 Identities=28% Similarity=0.349 Sum_probs=56.1
Q ss_pred HHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000306 94 ALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1691)
Q Consensus 94 a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I 172 (1691)
|.+++..|.+++.... ...|+.+|++|..+.|+...+-..+|.+++.++ +.|++|...+.+||.+
T Consensus 3 a~~~~~~g~~~~~~~~-----------~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~---~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGD-----------YEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG---KDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTH-----------HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT---THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC---ccHHHHHHHHHHHHHc
Confidence 6778888888887642 268999999999999999999999999999993 1799999999999986
No 71
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=91.83 E-value=0.84 Score=60.26 Aligned_cols=102 Identities=10% Similarity=0.062 Sum_probs=64.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhh------------ccCChhHHHH-----------H
Q 000306 64 ALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS------------IIDDLNSKQR-----------H 120 (1691)
Q Consensus 64 al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~------------~~~~~~~k~~-----------~ 120 (1691)
+.-.+..|++.+|+...++.+..+|+. +..+...|.++..+.. ..++...... -
T Consensus 338 g~~~~~~g~~~eA~~~~~kal~l~P~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 414 (615)
T TIGR00990 338 GTFKCLKGKHLEALADLSKSIELDPRV---TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGE 414 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 345567899999999999999999988 6777777777765421 1111111111 1
Q ss_pred HHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000306 121 LKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1691)
Q Consensus 121 L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I 172 (1691)
+..|+.+|.+|..+.|+.+..-..+|.+++.+ |.|++|...+.+++.+
T Consensus 415 ~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~----g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 415 FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKE----GSIASSMATFRRCKKN 462 (615)
T ss_pred HHHHHHHHHHHHHcCccCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHh
Confidence 23466666666666666666555566666555 4566666666666654
No 72
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=91.45 E-value=2.1 Score=48.87 Aligned_cols=102 Identities=14% Similarity=0.176 Sum_probs=67.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHH
Q 000306 64 ALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAH 143 (1691)
Q Consensus 64 al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~ 143 (1691)
+.-++..|++.+|+...+++...+|++..++.+++..|.++++... +..........|+..|.++....|++...-.
T Consensus 77 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~---~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 153 (235)
T TIGR03302 77 AYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQID---RVDRDQTAAREAFEAFQELIRRYPNSEYAPD 153 (235)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcc---cccCCHHHHHHHHHHHHHHHHHCCCChhHHH
Confidence 3455666777777777777777777765445566777777765411 1111123456799999999999999864321
Q ss_pred -----------------HHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000306 144 -----------------FYANLLYEAANDGKEYEEVVQECERALAI 172 (1691)
Q Consensus 144 -----------------~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I 172 (1691)
..|..++.. |.|++|...+.+++..
T Consensus 154 a~~~~~~~~~~~~~~~~~~a~~~~~~----g~~~~A~~~~~~al~~ 195 (235)
T TIGR03302 154 AKKRMDYLRNRLAGKELYVARFYLKR----GAYVAAINRFETVVEN 195 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHH
Confidence 234444444 6899999999998876
No 73
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=91.30 E-value=0.91 Score=54.88 Aligned_cols=69 Identities=19% Similarity=0.240 Sum_probs=37.1
Q ss_pred CcccchHHHHHHHhhHH-HHHHHhccCCCCCCccCCcHHHHHHHHHHHHHhhcCCCCCCcccCcHHHHHHHhhhCCCCcc
Q 000306 1310 YNCFLNVIIQSLWHLRR-FREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLRIALSNLYPDSNF 1388 (1691)
Q Consensus 1310 NTCYmNSVLQ~L~hip~-FR~~ll~~~~~~~~~~~~~cv~~aL~~LF~~L~~ss~~~~~~~VsP~~L~~aL~~~~p~~~~ 1388 (1691)
|+||+||++=.|-++.. |+ .-+|++++.++... .|..|...+-... .
T Consensus 110 NNCwVna~~~~LQ~~~~~f~-------------------~~~l~~aw~~f~~G---------~~~~fVa~~Ya~~-~--- 157 (320)
T PF08715_consen 110 NNCWVNAACLQLQALKIKFK-------------------SPGLDEAWNEFKAG---------DPAPFVAWCYAST-N--- 157 (320)
T ss_dssp TTHHHHHHHHHHTTST--BS-------------------SHHHHHHHHHHHTT-----------HHHHHHHHHHT-T---
T ss_pred CCcHHHHHHHHHHhcCCccC-------------------CHHHHHHHHHHhCC---------ChHHHHHHHHHHc-C---
Confidence 89999999876644431 11 12456666666632 2444433332211 1
Q ss_pred chhhccccHHHHHHHHHHHHHh
Q 000306 1389 FQEAQMNDASEVLAVIFDCLHR 1410 (1691)
Q Consensus 1389 F~~g~QQDA~EFL~~LLD~Lhe 1410 (1691)
+..|+..||+++|..||+.++.
T Consensus 158 ~~~G~~gDa~~~L~~ll~~~~~ 179 (320)
T PF08715_consen 158 AKKGDPGDAEYVLSKLLKDADL 179 (320)
T ss_dssp --TTS---HHHHHHHHHTTB-T
T ss_pred CCCCCCcCHHHHHHHHHHhccc
Confidence 5578999999999999876664
No 74
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=90.93 E-value=0.97 Score=43.45 Aligned_cols=83 Identities=20% Similarity=0.294 Sum_probs=64.0
Q ss_pred cCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHH
Q 000306 70 RGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLL 149 (1691)
Q Consensus 70 ~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L 149 (1691)
.|++..|+...+++....|.+. -..+.+.-|.+++.... ...|+..+.+ ..+.|..+.+...+|+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~-~~~~~~~la~~~~~~~~-----------y~~A~~~~~~-~~~~~~~~~~~~l~a~~~ 68 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP-NSAYLYNLAQCYFQQGK-----------YEEAIELLQK-LKLDPSNPDIHYLLARCL 68 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH-HHHHHHHHHHHHHHTTH-----------HHHHHHHHHC-HTHHHCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh-hHHHHHHHHHHHHHCCC-----------HHHHHHHHHH-hCCCCCCHHHHHHHHHHH
Confidence 5899999999999999998531 13333446778776642 2678888888 888899999999999999
Q ss_pred HHHhccCccHHHHHHHHHHh
Q 000306 150 YEAANDGKEYEEVVQECERA 169 (1691)
Q Consensus 150 ~~~~~~~~~Y~ea~~e~~Ra 169 (1691)
+.+ +.|++|.....+|
T Consensus 69 ~~l----~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 69 LKL----GKYEEAIKALEKA 84 (84)
T ss_dssp HHT----T-HHHHHHHHHHH
T ss_pred HHh----CCHHHHHHHHhcC
Confidence 999 6899998777664
No 75
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=90.89 E-value=1.9 Score=59.88 Aligned_cols=48 Identities=8% Similarity=-0.010 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhccc
Q 000306 122 KNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIE 173 (1691)
Q Consensus 122 ~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~ 173 (1691)
..|+.+|.+|..+.|+...+-..+|.++..+ |.|++|+..+++|+.+.
T Consensus 660 eeAi~~l~~AL~l~P~~~~a~~nLA~al~~l----Gd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 660 AQSREMLERAHKGLPDDPALIRQLAYVNQRL----DDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHhcC
Confidence 4677888888888888888888888888888 57888888888888764
No 76
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=90.07 E-value=1.5 Score=49.74 Aligned_cols=95 Identities=16% Similarity=0.202 Sum_probs=75.3
Q ss_pred cCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHH
Q 000306 70 RGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLL 149 (1691)
Q Consensus 70 ~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L 149 (1691)
.++..+++..++.....+|++ +-++..-|.++.... +. ..|+.+|.+|.+|.|+..++...+|.+|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~---~~~w~~Lg~~~~~~g----~~-------~~A~~a~~~Al~l~P~~~~~~~~lA~aL 117 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQN---SEQWALLGEYYLWRN----DY-------DNALLAYRQALQLRGENAELYAALATVL 117 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCC----CH-------HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 456788888889988899999 788888898888653 22 5899999999999999999999999988
Q ss_pred HHHhccCccHHHHHHHHHHhhcccCCCCccc
Q 000306 150 YEAANDGKEYEEVVQECERALAIENPIDPAK 180 (1691)
Q Consensus 150 ~~~~~~~~~Y~ea~~e~~RaL~I~~P~DPa~ 180 (1691)
+....+ ..|++|..-..+||.+. |.+|..
T Consensus 118 ~~~~g~-~~~~~A~~~l~~al~~d-P~~~~a 146 (198)
T PRK10370 118 YYQAGQ-HMTPQTREMIDKALALD-ANEVTA 146 (198)
T ss_pred HHhcCC-CCcHHHHHHHHHHHHhC-CCChhH
Confidence 655311 13799999999999973 545433
No 77
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=89.82 E-value=1.4 Score=51.39 Aligned_cols=92 Identities=15% Similarity=0.169 Sum_probs=77.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHH
Q 000306 63 RALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFA 142 (1691)
Q Consensus 63 ~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia 142 (1691)
..+..+++||+..|+..+.+++.--|.. |.++.+-|-++.++.+. ..|...|.+|..|+||.-.++
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d---~~~~~~lgaaldq~Gr~-----------~~Ar~ay~qAl~L~~~~p~~~ 171 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAPTD---WEAWNLLGAALDQLGRF-----------DEARRAYRQALELAPNEPSIA 171 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCCCC---hhhhhHHHHHHHHccCh-----------hHHHHHHHHHHHhccCCchhh
Confidence 5678889999999999999988888888 89999999888877642 467788899999999999999
Q ss_pred HHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000306 143 HFYANLLYEAANDGKEYEEVVQECERALAI 172 (1691)
Q Consensus 143 ~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I 172 (1691)
-=+|++++.- |+++.|++...+|..-
T Consensus 172 nNlgms~~L~----gd~~~A~~lll~a~l~ 197 (257)
T COG5010 172 NNLGMSLLLR----GDLEDAETLLLPAYLS 197 (257)
T ss_pred hhHHHHHHHc----CCHHHHHHHHHHHHhC
Confidence 9999988888 6889999888777763
No 78
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=89.02 E-value=2.8 Score=46.01 Aligned_cols=100 Identities=17% Similarity=0.153 Sum_probs=71.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChH
Q 000306 60 ECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSV 139 (1691)
Q Consensus 60 e~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl 139 (1691)
--..++.+...|++.+|+...++.+..+|.....+.+++..|.+++.+.. ...|+.+|.+|..+.|+..
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~ 106 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGE-----------HDKALEYYHQALELNPKQP 106 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCcccH
Confidence 34556778889999999999999987776542225677777888876642 2578889999999999998
Q ss_pred HHHHHHHHHHHHHhcc---CccHHHHHHHHHHhh
Q 000306 140 EFAHFYANLLYEAAND---GKEYEEVVQECERAL 170 (1691)
Q Consensus 140 ~ia~~~A~~L~~~~~~---~~~Y~ea~~e~~RaL 170 (1691)
.....++.+++..+.. .+.+++|.....+|+
T Consensus 107 ~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~ 140 (172)
T PRK02603 107 SALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAA 140 (172)
T ss_pred HHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHH
Confidence 8888888888887542 224555544444443
No 79
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=88.94 E-value=1.6 Score=54.41 Aligned_cols=80 Identities=23% Similarity=0.238 Sum_probs=65.4
Q ss_pred HcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHH
Q 000306 69 RRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANL 148 (1691)
Q Consensus 69 ~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~ 148 (1691)
..++..+|++.+.+....+|.+ +.++.+|+..+.+... | .-|+.++.+|+.++|+..+.=..+|..
T Consensus 212 ~~~~E~~AI~ll~~aL~~~p~d---~~LL~~Qa~fLl~k~~----------~-~lAL~iAk~av~lsP~~f~~W~~La~~ 277 (395)
T PF09295_consen 212 LMNEEVEAIRLLNEALKENPQD---SELLNLQAEFLLSKKK----------Y-ELALEIAKKAVELSPSEFETWYQLAEC 277 (395)
T ss_pred hcCcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCC----------H-HHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 4566778888888888778888 7777788877775532 1 689999999999999999999999999
Q ss_pred HHHHhccCccHHHHHHHH
Q 000306 149 LYEAANDGKEYEEVVQEC 166 (1691)
Q Consensus 149 L~~~~~~~~~Y~ea~~e~ 166 (1691)
++.+ |+|++|..-.
T Consensus 278 Yi~~----~d~e~ALlaL 291 (395)
T PF09295_consen 278 YIQL----GDFENALLAL 291 (395)
T ss_pred HHhc----CCHHHHHHHH
Confidence 9999 6899998543
No 80
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.84 E-value=0.72 Score=54.57 Aligned_cols=55 Identities=29% Similarity=0.442 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000306 114 LNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1691)
Q Consensus 114 ~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I 172 (1691)
..+|..-...||+.|.+|..|.|+.-++..=+|.++..| |.|+.|+..|+.||.|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~L----g~~~~AVkDce~Al~i 144 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKL----GEYEDAVKDCESALSI 144 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHh----cchHHHHHHHHHHHhc
Confidence 445555568999999999999999999999999999999 6999999999999998
No 81
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=88.56 E-value=5.5 Score=45.13 Aligned_cols=84 Identities=17% Similarity=0.090 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCCh
Q 000306 59 LECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHS 138 (1691)
Q Consensus 59 ~e~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~s 138 (1691)
....-|...++.|++.+|+...++++..||+|..++-+++..|..++.+....-..+-.......|+..|..-....|||
T Consensus 44 A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S 123 (203)
T PF13525_consen 44 AQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNS 123 (203)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCc
Confidence 34455677889999999999999999999999888999999999999886543011233567889999999999999999
Q ss_pred HHHH
Q 000306 139 VEFA 142 (1691)
Q Consensus 139 l~ia 142 (1691)
--..
T Consensus 124 ~y~~ 127 (203)
T PF13525_consen 124 EYAE 127 (203)
T ss_dssp TTHH
T ss_pred hHHH
Confidence 7443
No 82
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=88.52 E-value=1.1 Score=40.70 Aligned_cols=53 Identities=28% Similarity=0.487 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCc
Q 000306 121 LKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDP 178 (1691)
Q Consensus 121 L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~~P~DP 178 (1691)
...|+.+|.++....|++.+.-..+|.+++.. |.|++|..-..+++.+ .|.+|
T Consensus 13 ~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~----g~~~~A~~~~~~a~~~-~P~~p 65 (65)
T PF13432_consen 13 YDEAIAAFEQALKQDPDNPEAWYLLGRILYQQ----GRYDEALAYYERALEL-DPDNP 65 (65)
T ss_dssp HHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHT----T-HHHHHHHHHHHHHH-STT-H
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHH-CcCCC
Confidence 36899999999999999999999999999998 6899999889998876 35554
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=88.49 E-value=7.1 Score=47.31 Aligned_cols=111 Identities=22% Similarity=0.138 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHH---HHHhhchhhHH---Hhhc-----cCChh---HHH----H-
Q 000306 59 LECERALTALRRGNHKKALRLMKELSSRHENSAYVAL---IHRVQGTVCVK---VASI-----IDDLN---SKQ----R- 119 (1691)
Q Consensus 59 ~e~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~---~h~lqG~i~~~---~a~~-----~~~~~---~k~----~- 119 (1691)
....+++.++..|++.+|++..+++...+|.+..+.. .+...|...-+ +... -.++. ... .
T Consensus 45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~ 124 (355)
T cd05804 45 RAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGL 124 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHH
Confidence 3445678889999999999999999999999832211 22222221100 0000 11121 111 0
Q ss_pred ----HHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhccc
Q 000306 120 ----HLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIE 173 (1691)
Q Consensus 120 ----~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~ 173 (1691)
.+..|+..+.++..+.|+.....+.+|.++++. +.|++|..-+.+++...
T Consensus 125 ~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~----g~~~eA~~~l~~~l~~~ 178 (355)
T cd05804 125 EEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ----GRFKEGIAFMESWRDTW 178 (355)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc----CCHHHHHHHHHhhhhcc
Confidence 156799999999999999999999999999998 68999999999999864
No 84
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=87.64 E-value=1.7 Score=39.85 Aligned_cols=63 Identities=22% Similarity=0.290 Sum_probs=54.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCC
Q 000306 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSP 136 (1691)
Q Consensus 61 ~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P 136 (1691)
...+..++..|++.+|+...++.+..+|+. +.++...|.+++.+.. + ...|+.++.+|..|.|
T Consensus 7 ~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~---~~~~~~~g~~~~~~~~---~-------~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 7 YNLGQIYFQQGDYEEAIEYFEKAIELDPNN---AEAYYNLGLAYMKLGK---D-------YEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHSTTH---HHHHHHHHHHHHHTTT---H-------HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhCc---c-------HHHHHHHHHHHHHcCc
Confidence 456788899999999999999999999999 8999999999998751 1 2589999999999988
No 85
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=87.61 E-value=2.3 Score=59.08 Aligned_cols=53 Identities=25% Similarity=0.340 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCcc
Q 000306 122 KNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPA 179 (1691)
Q Consensus 122 ~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~~P~DPa 179 (1691)
..|+.+|.+|..+.|+....-.-+|.+|... +.|++|...+.+||.+ +|.+|.
T Consensus 626 deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~----G~~eeAi~~l~~AL~l-~P~~~~ 678 (987)
T PRK09782 626 PAAVSDLRAALELEPNNSNYQAALGYALWDS----GDIAQSREMLERAHKG-LPDDPA 678 (987)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHh-CCCCHH
Confidence 4577778888888888887777777777776 5678888778888776 355553
No 86
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=87.54 E-value=2.6 Score=57.24 Aligned_cols=101 Identities=17% Similarity=0.106 Sum_probs=81.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHH
Q 000306 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEF 141 (1691)
Q Consensus 62 ~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~i 141 (1691)
..|.-+...|+..+|++.++++....|+. +.++...|.+..... ++ ..|+..+.+|..+.|+.+.+
T Consensus 364 ~~a~~l~~~g~~~eA~~~l~~al~~~P~n---~~l~~~lA~l~~~~g----~~-------~~A~~~l~~al~l~Pd~~~l 429 (765)
T PRK10049 364 LLSQVAKYSNDLPQAEMRARELAYNAPGN---QGLRIDYASVLQARG----WP-------RAAENELKKAEVLEPRNINL 429 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcC----CH-------HHHHHHHHHHHhhCCCChHH
Confidence 44556778899999999999999999999 777777777666543 22 68999999999999999997
Q ss_pred HHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCcccc
Q 000306 142 AHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1691)
Q Consensus 142 a~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~~P~DPa~~ 181 (1691)
=...|..+..+ +.|++|++...+++.. .|-+|...
T Consensus 430 ~~~~a~~al~~----~~~~~A~~~~~~ll~~-~Pd~~~~~ 464 (765)
T PRK10049 430 EVEQAWTALDL----QEWRQMDVLTDDVVAR-EPQDPGVQ 464 (765)
T ss_pred HHHHHHHHHHh----CCHHHHHHHHHHHHHh-CCCCHHHH
Confidence 77777776666 5899999999999984 46666444
No 87
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=87.03 E-value=1.7 Score=39.58 Aligned_cols=67 Identities=16% Similarity=0.300 Sum_probs=55.7
Q ss_pred HHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHH
Q 000306 67 ALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYA 146 (1691)
Q Consensus 67 ~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A 146 (1691)
++..|++.+|++..+++...+|++ +-+...-|.++++... +..|...+.++....|+...+..++|
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~-----------~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDN---PEARLLLAQCYLKQGQ-----------YDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTS---HHHHHHHHHHHHHTT------------HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 467899999999999999999999 7777777888876642 35799999999999999877777776
Q ss_pred H
Q 000306 147 N 147 (1691)
Q Consensus 147 ~ 147 (1691)
.
T Consensus 67 ~ 67 (68)
T PF14559_consen 67 Q 67 (68)
T ss_dssp H
T ss_pred c
Confidence 5
No 88
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=86.17 E-value=4.7 Score=44.35 Aligned_cols=105 Identities=19% Similarity=0.176 Sum_probs=71.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhh----------ccCC---h-hHHH--------
Q 000306 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS----------IIDD---L-NSKQ-------- 118 (1691)
Q Consensus 61 ~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~----------~~~~---~-~~k~-------- 118 (1691)
...+.-....|++++|++..++....+|.. +.++...|.+++.... .++. + ....
T Consensus 69 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (234)
T TIGR02521 69 LALALYYQQLGELEKAEDSFRRALTLNPNN---GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCA 145 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 345667788899999999999988888877 4455555555443321 1110 0 0000
Q ss_pred ---HHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000306 119 ---RHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1691)
Q Consensus 119 ---~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I 172 (1691)
.-+..|...+.++..+.|+.......+|.+++.. +.|++|..-..+++.+
T Consensus 146 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 146 LKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLR----GQYKDARAYLERYQQT 198 (234)
T ss_pred HHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHc----CCHHHHHHHHHHHHHh
Confidence 1134588888888888888888777888887777 5788888888888887
No 89
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=85.90 E-value=3.1 Score=55.84 Aligned_cols=88 Identities=22% Similarity=0.301 Sum_probs=58.2
Q ss_pred HHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHH
Q 000306 67 ALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYA 146 (1691)
Q Consensus 67 ~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A 146 (1691)
+...|++.+|++.+++.....|.+ +.++.+.|.+++... ....|+.+|.+|..+.|+.......+|
T Consensus 169 ~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g-----------~~~~A~~~~~~a~~~~p~~~~~~~~~~ 234 (899)
T TIGR02917 169 ALAENRFDEARALIDEVLTADPGN---VDALLLKGDLLLSLG-----------NIELALAAYRKAIALRPNNPAVLLALA 234 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 344455555555555555444544 444444444444322 124688888889999999988888888
Q ss_pred HHHHHHhccCccHHHHHHHHHHhhcc
Q 000306 147 NLLYEAANDGKEYEEVVQECERALAI 172 (1691)
Q Consensus 147 ~~L~~~~~~~~~Y~ea~~e~~RaL~I 172 (1691)
.+++.. |.|++|...+.+++.+
T Consensus 235 ~~~~~~----g~~~~A~~~~~~~~~~ 256 (899)
T TIGR02917 235 TILIEA----GEFEEAEKHADALLKK 256 (899)
T ss_pred HHHHHc----CCHHHHHHHHHHHHHh
Confidence 888877 5788898888888775
No 90
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=85.79 E-value=3.2 Score=44.65 Aligned_cols=84 Identities=11% Similarity=0.101 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhh----ccCChhHHHHHHHHHHHHHHHHhh
Q 000306 58 KLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS----IIDDLNSKQRHLKNAIESAKKAAE 133 (1691)
Q Consensus 58 r~e~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~----~~~~~~~k~~~L~~Al~~~~~A~~ 133 (1691)
..+..-+-..+.+|++++|++-+++++.-||.+..|.-|.+..|..++++.. .+-..+.-..+.+.|+..|.+-++
T Consensus 48 qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~ 127 (142)
T PF13512_consen 48 QAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVR 127 (142)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHH
Confidence 3444455667888899999999999998999988888888888988888753 000222225577889999999999
Q ss_pred hCCChHHH
Q 000306 134 LSPHSVEF 141 (1691)
Q Consensus 134 L~P~sl~i 141 (1691)
-.|||---
T Consensus 128 ~yP~S~ya 135 (142)
T PF13512_consen 128 RYPNSEYA 135 (142)
T ss_pred HCcCChhH
Confidence 99998543
No 91
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=85.76 E-value=4 Score=51.13 Aligned_cols=85 Identities=15% Similarity=0.248 Sum_probs=50.2
Q ss_pred HcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHH
Q 000306 69 RRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANL 148 (1691)
Q Consensus 69 ~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~ 148 (1691)
..|+..+|+++++++..+||++ +.++...|.+++..-. ...|.+.|.++..+.|+... .+.+|.+
T Consensus 306 ~~~~~~~al~~~e~~lk~~P~~---~~l~l~lgrl~~~~~~-----------~~~A~~~le~al~~~P~~~~-~~~La~~ 370 (398)
T PRK10747 306 KTNNPEQLEKVLRQQIKQHGDT---PLLWSTLGQLLMKHGE-----------WQEASLAFRAALKQRPDAYD-YAWLADA 370 (398)
T ss_pred cCCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHhcCCCHHH-HHHHHHH
Confidence 3466666666666666666666 6666666666665421 13566666666666666544 2355655
Q ss_pred HHHHhccCccHHHHHHHHHHhhcc
Q 000306 149 LYEAANDGKEYEEVVQECERALAI 172 (1691)
Q Consensus 149 L~~~~~~~~~Y~ea~~e~~RaL~I 172 (1691)
+-.. |.-++|..-.++||..
T Consensus 371 ~~~~----g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 371 LDRL----HKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHc----CCHHHHHHHHHHHHhh
Confidence 5555 3456665556666554
No 92
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=85.75 E-value=9 Score=43.43 Aligned_cols=70 Identities=26% Similarity=0.380 Sum_probs=56.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHH
Q 000306 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVE 140 (1691)
Q Consensus 61 ~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ 140 (1691)
=..|+..+..|++.+|++..+++..+||+|..++.+....|..++... ....|+..|.+-..+.|++-.
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~-----------~y~~A~~~~~~fi~~yP~~~~ 77 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQG-----------DYEEAIAAYERFIKLYPNSPK 77 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT------------HHHHHHHHHHHHHH-TT-TT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHCCCCcc
Confidence 356789999999999999999999999999999999998899888663 235889999999999999874
Q ss_pred H
Q 000306 141 F 141 (1691)
Q Consensus 141 i 141 (1691)
+
T Consensus 78 ~ 78 (203)
T PF13525_consen 78 A 78 (203)
T ss_dssp H
T ss_pred h
Confidence 3
No 93
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=85.69 E-value=4.9 Score=45.91 Aligned_cols=109 Identities=20% Similarity=0.206 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCC
Q 000306 58 KLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPH 137 (1691)
Q Consensus 58 r~e~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~ 137 (1691)
..--..+..++..|+..+|+...++++..+|.+.....++...|.++++.. + ...|+..|.++.++.|+
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~----~-------~~~A~~~~~~~l~~~p~ 102 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSG----D-------YAEAIAAADRFIRLHPN 102 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcC----C-------HHHHHHHHHHHHHHCcC
Confidence 344566778889999999999999999999998555567888898888764 2 25899999999999999
Q ss_pred hHHH---HHHHHHHHHHHhc----cCccHHHHHHHHHHhhcccCCCCc
Q 000306 138 SVEF---AHFYANLLYEAAN----DGKEYEEVVQECERALAIENPIDP 178 (1691)
Q Consensus 138 sl~i---a~~~A~~L~~~~~----~~~~Y~ea~~e~~RaL~I~~P~DP 178 (1691)
.... -..++..++.... ..+.|++|.....+++.. +|..+
T Consensus 103 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~p~~~ 149 (235)
T TIGR03302 103 HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR-YPNSE 149 (235)
T ss_pred CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-CCCCh
Confidence 8875 2344555555411 124788999888888765 34443
No 94
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=85.45 E-value=5.6 Score=43.35 Aligned_cols=101 Identities=15% Similarity=0.041 Sum_probs=72.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHH
Q 000306 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVE 140 (1691)
Q Consensus 61 ~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ 140 (1691)
...+......|++++|+...+.....+|++...+.++.-.|.++.... ....|+.+|.+|..+.|....
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g-----------~~~eA~~~~~~Al~~~~~~~~ 107 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG-----------EHTKALEYYFQALERNPFLPQ 107 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCcCcHH
Confidence 455678888999999999998887666664222456666677776553 125788899999999999988
Q ss_pred HHHHHHHHHHHHhc---cCccHHHHHHHHHHhhcc
Q 000306 141 FAHFYANLLYEAAN---DGKEYEEVVQECERALAI 172 (1691)
Q Consensus 141 ia~~~A~~L~~~~~---~~~~Y~ea~~e~~RaL~I 172 (1691)
.-..+|.++..+|. ..|.|++|..-+.+|+.+
T Consensus 108 ~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~ 142 (168)
T CHL00033 108 ALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEY 142 (168)
T ss_pred HHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHH
Confidence 87778888885552 125677777667666654
No 95
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=84.41 E-value=11 Score=41.29 Aligned_cols=93 Identities=16% Similarity=0.094 Sum_probs=74.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHH
Q 000306 63 RALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFA 142 (1691)
Q Consensus 63 ~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia 142 (1691)
-|-.+...|+.++|.+.-.=|+.--|.. +.-..--|-++.... .+..|+++|.+|..|.||..+.-
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~~---~~y~~gLG~~~Q~~g-----------~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAWS---FDYWFRLGECCQAQK-----------HWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHhcCCCCchHH
Confidence 3467888999999999998888777777 555555566655443 34789999999999999999999
Q ss_pred HHHHHHHHHHhccCccHHHHHHHHHHhhccc
Q 000306 143 HFYANLLYEAANDGKEYEEVVQECERALAIE 173 (1691)
Q Consensus 143 ~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~ 173 (1691)
-..|..++.+ |..+.|..-.+.|+.+.
T Consensus 107 ~~ag~c~L~l----G~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 107 WAAAECYLAC----DNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHc----CCHHHHHHHHHHHHHHh
Confidence 9999999999 46688877788888875
No 96
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=83.95 E-value=6.9 Score=48.02 Aligned_cols=96 Identities=19% Similarity=0.172 Sum_probs=46.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHccCchhh--HHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChH
Q 000306 62 ERALTALRRGNHKKALRLMKELSSRHENSAYV--ALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSV 139 (1691)
Q Consensus 62 ~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~--a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl 139 (1691)
.-+.-+...|++.+|++..+.+...+|..... +..+...|.++++.. + +..|+..|.++..+.|+.+
T Consensus 146 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~----~-------~~~A~~~~~~al~~~p~~~ 214 (389)
T PRK11788 146 QLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG----D-------LDAARALLKKALAADPQCV 214 (389)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC----C-------HHHHHHHHHHHHhHCcCCH
Confidence 33444555677777777666666655543111 112223344433321 1 1245555555555555555
Q ss_pred HHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000306 140 EFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1691)
Q Consensus 140 ~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I 172 (1691)
+....+|.++... +.|++|.....+++.+
T Consensus 215 ~~~~~la~~~~~~----g~~~~A~~~~~~~~~~ 243 (389)
T PRK11788 215 RASILLGDLALAQ----GDYAAAIEALERVEEQ 243 (389)
T ss_pred HHHHHHHHHHHHC----CCHHHHHHHHHHHHHH
Confidence 5544555544444 3455555555555544
No 97
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=83.87 E-value=9.9 Score=39.84 Aligned_cols=95 Identities=19% Similarity=0.124 Sum_probs=67.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCC---h
Q 000306 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPH---S 138 (1691)
Q Consensus 62 ~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~---s 138 (1691)
+.|-..+..|++.+|+..-....+.-.....-..+..-.|..+..+. .. ..|+..++++..-+|+ +
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG----~~-------deA~~~L~~~~~~~p~~~~~ 74 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLG----RY-------DEALALLEEALEEFPDDELN 74 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcC----CH-------HHHHHHHHHHHHHCCCcccc
Confidence 45667788899999998888876532222111222222333333332 33 4788888999999999 8
Q ss_pred HHHHHHHHHHHHHHhccCccHHHHHHHHHHhhc
Q 000306 139 VEFAHFYANLLYEAANDGKEYEEVVQECERALA 171 (1691)
Q Consensus 139 l~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~ 171 (1691)
-.+.+|+|..|+.+ |.++||+...-++|+
T Consensus 75 ~~l~~f~Al~L~~~----gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 75 AALRVFLALALYNL----GRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHHHHC----CCHHHHHHHHHHHHH
Confidence 89999999999999 588999999988876
No 98
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=83.71 E-value=3 Score=44.89 Aligned_cols=78 Identities=22% Similarity=0.279 Sum_probs=62.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHH
Q 000306 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEF 141 (1691)
Q Consensus 62 ~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~i 141 (1691)
.+|...++.|++.+|.+..++|-.+||.+.++..+..-.|+.+|+.. + ...|+..+.+-.+|.|++-.+
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~----~-------y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQG----D-------YEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHcc----C-------HHHHHHHHHHHHHhCCCCCCc
Confidence 34556678899999999999999999999888888888899998764 2 247899999999999999863
Q ss_pred HHHHHHHHHHH
Q 000306 142 AHFYANLLYEA 152 (1691)
Q Consensus 142 a~~~A~~L~~~ 152 (1691)
-+|.-+..+
T Consensus 84 --dYa~Y~~gL 92 (142)
T PF13512_consen 84 --DYAYYMRGL 92 (142)
T ss_pred --cHHHHHHHH
Confidence 344444444
No 99
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=83.56 E-value=6.3 Score=56.20 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=23.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHH
Q 000306 63 RALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKV 107 (1691)
Q Consensus 63 ~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~ 107 (1691)
.|-.+...|+.++|++.++ .||.+ +.++...|.++.+.
T Consensus 579 ~a~~l~~~G~~~eA~~~l~----~~p~~---~~~~~~La~~~~~~ 616 (1157)
T PRK11447 579 TANRLRDSGKEAEAEALLR----QQPPS---TRIDLTLADWAQQR 616 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHH----hCCCC---chHHHHHHHHHHHc
Confidence 3445666777777775544 57777 56666666666544
No 100
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=82.88 E-value=4.7 Score=57.38 Aligned_cols=96 Identities=17% Similarity=0.212 Sum_probs=73.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHH
Q 000306 64 ALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAH 143 (1691)
Q Consensus 64 al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~ 143 (1691)
++.+...|++.+|+...++....+|++ +-++...|.++++.. + ...|+.+|.+|..+.|+......
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~---~~a~~~Lg~~~~~~g----~-------~~eA~~~l~~Al~~~p~~~~~~~ 341 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKD---SEALGALGQAYSQQG----D-------RARAVAQFEKALALDPHSSNRDK 341 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcC----C-------HHHHHHHHHHHHHhCCCccchhH
Confidence 566788999999999999999999999 888888898888664 2 25789999999999998754211
Q ss_pred --------------HHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCc
Q 000306 144 --------------FYANLLYEAANDGKEYEEVVQECERALAIENPIDP 178 (1691)
Q Consensus 144 --------------~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~~P~DP 178 (1691)
..|..++. .+.|++|...+.+|+.+ .|.++
T Consensus 342 ~~~ll~~~~~~~~~~~g~~~~~----~g~~~eA~~~~~~Al~~-~P~~~ 385 (1157)
T PRK11447 342 WESLLKVNRYWLLIQQGDAALK----ANNLAQAERLYQQARQV-DNTDS 385 (1157)
T ss_pred HHHHHHhhhHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHh-CCCCH
Confidence 11222333 36899999999999998 34444
No 101
>PRK11906 transcriptional regulator; Provisional
Probab=82.84 E-value=4.3 Score=51.14 Aligned_cols=83 Identities=17% Similarity=0.129 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHH
Q 000306 72 NHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYE 151 (1691)
Q Consensus 72 ~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~ 151 (1691)
+..+|++.|..-.+--|+. |.+|..-|++..-.+. +..|...|.+|..|.||+......+|.+++-
T Consensus 319 ~~~~a~~~A~rAveld~~D---a~a~~~~g~~~~~~~~-----------~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~ 384 (458)
T PRK11906 319 AAQKALELLDYVSDITTVD---GKILAIMGLITGLSGQ-----------AKVSHILFEQAKIHSTDIASLYYYRALVHFH 384 (458)
T ss_pred HHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhhcc-----------hhhHHHHHHHHhhcCCccHHHHHHHHHHHHH
Confidence 4566777777766666888 8899988887665431 3678999999999999999999999999998
Q ss_pred HhccCccHHHHHHHHHHhhcc
Q 000306 152 AANDGKEYEEVVQECERALAI 172 (1691)
Q Consensus 152 ~~~~~~~Y~ea~~e~~RaL~I 172 (1691)
. |..++|.....+||..
T Consensus 385 ~----G~~~~a~~~i~~alrL 401 (458)
T PRK11906 385 N----EKIEEARICIDKSLQL 401 (458)
T ss_pred c----CCHHHHHHHHHHHhcc
Confidence 8 5789999999999985
No 102
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=82.82 E-value=8.4 Score=47.27 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=30.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHH
Q 000306 63 RALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKV 107 (1691)
Q Consensus 63 ~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~ 107 (1691)
-+..+...|++++|++..+++....|.+ +.++...|.++...
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~ 227 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALAADPQC---VRASILLGDLALAQ 227 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHCcCC---HHHHHHHHHHHHHC
Confidence 4455667888888888888888777777 55666666666554
No 103
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=82.59 E-value=7.9 Score=48.61 Aligned_cols=105 Identities=18% Similarity=0.186 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCCh
Q 000306 59 LECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHS 138 (1691)
Q Consensus 59 ~e~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~s 138 (1691)
+...+++..+..|+...|.+.+.+.....|+. .+...+.|.+.... .+. ..|...+.+|.+..|+.
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~---~~~~llaA~aa~~~----g~~-------~~A~~~l~~a~~~~p~~ 151 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEP---VLNLIKAAEAAQQR----GDE-------ARANQHLEEAAELAGND 151 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHC----CCH-------HHHHHHHHHHHHhCCcC
Confidence 44566788899999999999998877555655 55555556665544 233 36777777788888998
Q ss_pred -HHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCccccc
Q 000306 139 -VEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKES 182 (1691)
Q Consensus 139 -l~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~~P~DPa~~~ 182 (1691)
+.+-..+|++++.. +.|+.|.....+.+.. .|.+|....
T Consensus 152 ~l~~~~~~a~l~l~~----~~~~~Al~~l~~l~~~-~P~~~~~l~ 191 (409)
T TIGR00540 152 NILVEIARTRILLAQ----NELHAARHGVDKLLEM-APRHKEVLK 191 (409)
T ss_pred chHHHHHHHHHHHHC----CCHHHHHHHHHHHHHh-CCCCHHHHH
Confidence 45655568888887 6899999999888887 488885443
No 104
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=81.94 E-value=4.2 Score=47.64 Aligned_cols=71 Identities=21% Similarity=0.196 Sum_probs=61.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChH
Q 000306 60 ECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSV 139 (1691)
Q Consensus 60 e~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl 139 (1691)
-=+.|...+..|++.+|++.-+++...||+|..+..++...|..+++... ...|+..|.+...+.|++-
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~-----------y~~A~~~~e~fi~~~P~~~ 103 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNAD-----------LPLAQAAIDRFIRLNPTHP 103 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHhCcCCC
Confidence 33778889999999999999999999999997777777888888887642 3689999999999999998
Q ss_pred HH
Q 000306 140 EF 141 (1691)
Q Consensus 140 ~i 141 (1691)
.+
T Consensus 104 ~~ 105 (243)
T PRK10866 104 NI 105 (243)
T ss_pred ch
Confidence 65
No 105
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=81.56 E-value=3.4 Score=38.18 Aligned_cols=47 Identities=34% Similarity=0.509 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000306 122 KNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1691)
Q Consensus 122 ~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I 172 (1691)
..|+.++.++..+.|+++..-..+|.+++.+ |.|++|...+.++|.+
T Consensus 12 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~----g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 12 EEALEVLERALELDPDDPELWLQRARCLFQL----GRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHHHHHHHHhCcccchhhHHHHHHHHHh----ccHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999 6899999999999976
No 106
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=81.39 E-value=7.6 Score=46.37 Aligned_cols=85 Identities=15% Similarity=0.129 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHH
Q 000306 73 HKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEA 152 (1691)
Q Consensus 73 ~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~ 152 (1691)
+...+.+++.-...||++ +-=.-+-|.+++.+.+ ...|+.+|++|.+|.|+..++...+|..|+..
T Consensus 138 ~~~l~a~Le~~L~~nP~d---~egW~~Lg~~ym~~~~-----------~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~ 203 (287)
T COG4235 138 MEALIARLETHLQQNPGD---AEGWDLLGRAYMALGR-----------ASDALLAYRNALRLAGDNPEILLGLAEALYYQ 203 (287)
T ss_pred HHHHHHHHHHHHHhCCCC---chhHHHHHHHHHHhcc-----------hhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 566677777777788888 4555666777776642 35899999999999999999999999999999
Q ss_pred hccCccHHHHHHHHHHhhcc
Q 000306 153 ANDGKEYEEVVQECERALAI 172 (1691)
Q Consensus 153 ~~~~~~Y~ea~~e~~RaL~I 172 (1691)
+.+ ..=.++..-.+.||..
T Consensus 204 a~~-~~ta~a~~ll~~al~~ 222 (287)
T COG4235 204 AGQ-QMTAKARALLRQALAL 222 (287)
T ss_pred cCC-cccHHHHHHHHHHHhc
Confidence 843 4445555556666664
No 107
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=80.83 E-value=4.4 Score=47.85 Aligned_cols=102 Identities=23% Similarity=0.274 Sum_probs=68.4
Q ss_pred HHHcCCHHHHHHHHHHHHHHc--cCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHH
Q 000306 67 ALRRGNHKKALRLMKELSSRH--ENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHF 144 (1691)
Q Consensus 67 ~~~~G~~~kAl~~~~eL~~~h--~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~ 144 (1691)
+.+.|+..+|...++.+...- +.| +.+....|.++.+... . ..|+.+|.+|.++.|+...+...
T Consensus 120 ~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~a~~~~~~G~----~-------~~A~~~~~~al~~~P~~~~~~~~ 185 (280)
T PF13429_consen 120 YYRLGDYDEAEELLEKLEELPAAPDS---ARFWLALAEIYEQLGD----P-------DKALRDYRKALELDPDDPDARNA 185 (280)
T ss_dssp HHHTT-HHHHHHHHHHHHH-T---T----HHHHHHHHHHHHHCCH----H-------HHHHHHHHHHHHH-TT-HHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhccCCCCC---HHHHHHHHHHHHHcCC----H-------HHHHHHHHHHHHcCCCCHHHHHH
Confidence 567788888888878766433 567 7888888888887642 2 58999999999999999998888
Q ss_pred HHHHHHHHhccCccHHHHHHHHHHhhcccCCCCccccccchhhh
Q 000306 145 YANLLYEAANDGKEYEEVVQECERALAIENPIDPAKESLQDESQ 188 (1691)
Q Consensus 145 ~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~~P~DPa~~~v~~~~~ 188 (1691)
++.+|+.. |.++++..-+.+.... .|.||.-... ++..
T Consensus 186 l~~~li~~----~~~~~~~~~l~~~~~~-~~~~~~~~~~-la~~ 223 (280)
T PF13429_consen 186 LAWLLIDM----GDYDEAREALKRLLKA-APDDPDLWDA-LAAA 223 (280)
T ss_dssp HHHHHCTT----CHHHHHHHHHHHHHHH--HTSCCHCHH-HHHH
T ss_pred HHHHHHHC----CChHHHHHHHHHHHHH-CcCHHHHHHH-HHHH
Confidence 88888777 4667643333333333 2888888753 4444
No 108
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=80.17 E-value=5 Score=47.34 Aligned_cols=101 Identities=23% Similarity=0.341 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhh--CCCh
Q 000306 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAEL--SPHS 138 (1691)
Q Consensus 61 ~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L--~P~s 138 (1691)
..+...+...|++.+|+..+++...+.+ + +........+++.. .+. ..+.+.+.++..+ .|++
T Consensus 81 ~~~l~~l~~~~~~~~A~~~~~~~~~~~~-~---~~~l~~~l~~~~~~----~~~-------~~~~~~l~~~~~~~~~~~~ 145 (280)
T PF13429_consen 81 YERLIQLLQDGDPEEALKLAEKAYERDG-D---PRYLLSALQLYYRL----GDY-------DEAEELLEKLEELPAAPDS 145 (280)
T ss_dssp -----------------------------------------H-HHHT----T-H-------HHHHHHHHHHHH-T---T-
T ss_pred cccccccccccccccccccccccccccc-c---cchhhHHHHHHHHH----hHH-------HHHHHHHHHHHhccCCCCC
Confidence 3344555788999999999988775553 4 33333334444333 222 2333444443333 3677
Q ss_pred HHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCcccc
Q 000306 139 VEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1691)
Q Consensus 139 l~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~~P~DPa~~ 181 (1691)
..+-..+|..+... |.+++|..-.++||.. +|.||...
T Consensus 146 ~~~~~~~a~~~~~~----G~~~~A~~~~~~al~~-~P~~~~~~ 183 (280)
T PF13429_consen 146 ARFWLALAEIYEQL----GDPDKALRDYRKALEL-DPDDPDAR 183 (280)
T ss_dssp HHHHHHHHHHHHHC----CHHHHHHHHHHHHHHH--TT-HHHH
T ss_pred HHHHHHHHHHHHHc----CCHHHHHHHHHHHHHc-CCCCHHHH
Confidence 88888888888877 6889999999999997 48777654
No 109
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=80.13 E-value=20 Score=42.00 Aligned_cols=80 Identities=10% Similarity=0.132 Sum_probs=64.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhh-------ccCChhHHHHHHHHHHHHHHHHh
Q 000306 60 ECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS-------IIDDLNSKQRHLKNAIESAKKAA 132 (1691)
Q Consensus 60 e~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~-------~~~~~~~k~~~L~~Al~~~~~A~ 132 (1691)
.-.-|...++.|++.+|+...++++..||++..++-+++..|..++++.. .++..+--....+.|+..+.+-+
T Consensus 72 ~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li 151 (243)
T PRK10866 72 QLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV 151 (243)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH
Confidence 34445667899999999999999999999999999999999988776642 12233323557789999999999
Q ss_pred hhCCChH
Q 000306 133 ELSPHSV 139 (1691)
Q Consensus 133 ~L~P~sl 139 (1691)
+..|||-
T Consensus 152 ~~yP~S~ 158 (243)
T PRK10866 152 RGYPNSQ 158 (243)
T ss_pred HHCcCCh
Confidence 9999996
No 110
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=80.01 E-value=7.2 Score=53.12 Aligned_cols=88 Identities=14% Similarity=0.046 Sum_probs=41.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHH
Q 000306 66 TALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFY 145 (1691)
Q Consensus 66 ~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~ 145 (1691)
.+...|++.+|++..+++.+..|.+ +-++...|.++.+.. +. ..|+..+.+++.+.|+... ...+
T Consensus 58 ~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~la~~l~~~g----~~-------~eA~~~l~~~l~~~P~~~~-~~~l 122 (765)
T PRK10049 58 AYRNLKQWQNSLTLWQKALSLEPQN---DDYQRGLILTLADAG----QY-------DEALVKAKQLVSGAPDKAN-LLAL 122 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCC----CH-------HHHHHHHHHHHHhCCCCHH-HHHH
Confidence 3444455555555555555455554 333333333332221 11 2455555555555555555 4444
Q ss_pred HHHHHHHhccCccHHHHHHHHHHhhcc
Q 000306 146 ANLLYEAANDGKEYEEVVQECERALAI 172 (1691)
Q Consensus 146 A~~L~~~~~~~~~Y~ea~~e~~RaL~I 172 (1691)
|.++... +.+++|+....+++.+
T Consensus 123 a~~l~~~----g~~~~Al~~l~~al~~ 145 (765)
T PRK10049 123 AYVYKRA----GRHWDELRAMTQALPR 145 (765)
T ss_pred HHHHHHC----CCHHHHHHHHHHHHHh
Confidence 4444444 3455555555555554
No 111
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=79.02 E-value=7.4 Score=52.26 Aligned_cols=96 Identities=17% Similarity=0.167 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhC
Q 000306 56 AIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELS 135 (1691)
Q Consensus 56 ~ir~e~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~ 135 (1691)
..+.-...|...+..|++++|+...++....+|.+ +-+++..|.++..+.. - ..|+..+.++..+.
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~----~-------~~A~~~~~~~~~~~ 86 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQKDPND---AEARFLLGKIYLALGD----Y-------AAAEKELRKALSLG 86 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCC----H-------HHHHHHHHHHHHcC
Confidence 34556778889999999999999999999999999 8899999999987642 1 46888888888899
Q ss_pred CChHHHHHHHHHHHHHHhccCccHHHHHHHHHHh
Q 000306 136 PHSVEFAHFYANLLYEAANDGKEYEEVVQECERA 169 (1691)
Q Consensus 136 P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~Ra 169 (1691)
|+.......+|+.++.. |.|++|...+..+
T Consensus 87 ~~~~~~~~~~a~~~~~~----g~~~~a~~~~~~~ 116 (899)
T TIGR02917 87 YPKNQVLPLLARAYLLQ----GKFQQVLDELPGK 116 (899)
T ss_pred CChhhhHHHHHHHHHHC----CCHHHHHHhhccc
Confidence 98888888888888877 5788887665443
No 112
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=78.57 E-value=17 Score=45.15 Aligned_cols=87 Identities=24% Similarity=0.229 Sum_probs=64.7
Q ss_pred HHHHHHH---cCCHHHHHHHHHH-HHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCCh
Q 000306 63 RALTALR---RGNHKKALRLMKE-LSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHS 138 (1691)
Q Consensus 63 ~al~~~~---~G~~~kAl~~~~e-L~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~s 138 (1691)
-|+.+-| .|++.+|+..+.. |....+.+ +=...+-|.|+.++.......+ ..+|..|.++|.+|-++.|+-
T Consensus 185 yafALnRrn~~gdre~Al~il~~~l~~~~~~~---~d~~gL~GRIyKD~~~~s~~~d--~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 185 YAFALNRRNKPGDREKALQILLPVLESDENPD---PDTLGLLGRIYKDLFLESNFTD--RESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHHHhhcccCCCHHHHHHHHHHHHhccCCCC---hHHHHHHHHHHHHHHHHcCccc--hHHHHHHHHHHHHHHcCCccc
Confidence 4567777 8999999999999 77777777 8899999999999875433333 335999999999999999653
Q ss_pred HHHHHHHHHHHHHHhcc
Q 000306 139 VEFAHFYANLLYEAAND 155 (1691)
Q Consensus 139 l~ia~~~A~~L~~~~~~ 155 (1691)
=...=+|.+|...|.+
T Consensus 260 -Y~GIN~AtLL~~~g~~ 275 (374)
T PF13281_consen 260 -YSGINAATLLMLAGHD 275 (374)
T ss_pred -cchHHHHHHHHHcCCc
Confidence 2233344556666544
No 113
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=78.31 E-value=5 Score=36.47 Aligned_cols=48 Identities=27% Similarity=0.305 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000306 121 LKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1691)
Q Consensus 121 L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I 172 (1691)
...|+..|.++....|+..++-..+|.+++.. |.|++|...+.+++..
T Consensus 7 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 7 YDEAIELLEKALQRNPDNPEARLLLAQCYLKQ----GQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHT----T-HHHHHHHHHCCHGG
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999 6899999999888774
No 114
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=78.29 E-value=1.4 Score=32.72 Aligned_cols=23 Identities=26% Similarity=0.609 Sum_probs=21.0
Q ss_pred EecccchhccCChhHHHHhhhhh
Q 000306 389 WVCCRCNEKFADSESHMHHVVQQ 411 (1691)
Q Consensus 389 WiCp~C~~kF~d~~~~~~Hl~~~ 411 (1691)
|.|..|.+.|.+...+..|+..+
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s~ 23 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRSK 23 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTTH
T ss_pred CCCCCCCCCcCCHHHHHHHHCcC
Confidence 78999999999999999999653
No 115
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=78.24 E-value=9.9 Score=46.07 Aligned_cols=95 Identities=14% Similarity=0.050 Sum_probs=72.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChH
Q 000306 60 ECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSV 139 (1691)
Q Consensus 60 e~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl 139 (1691)
-.-.++-+...|++.+|+...++.....|.+ +.+++.-|+++++..+ +..|+..+.++..+.|...
T Consensus 117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~---~~~~~~la~i~~~~g~-----------~~eA~~~l~~~l~~~~~~~ 182 (355)
T cd05804 117 LGMLAFGLEEAGQYDRAEEAARRALELNPDD---AWAVHAVAHVLEMQGR-----------FKEGIAFMESWRDTWDCSS 182 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHcCC-----------HHHHHHHHHhhhhccCCCc
Confidence 3445567788999999999999999999999 7888888999997653 2478888888888887543
Q ss_pred HHH----HHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000306 140 EFA----HFYANLLYEAANDGKEYEEVVQECERALAI 172 (1691)
Q Consensus 140 ~ia----~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I 172 (1691)
... ..+|..++.. |.|++|.....+++..
T Consensus 183 ~~~~~~~~~la~~~~~~----G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 183 MLRGHNWWHLALFYLER----GDYEAALAIYDTHIAP 215 (355)
T ss_pred chhHHHHHHHHHHHHHC----CCHHHHHHHHHHHhcc
Confidence 321 2356666666 6899999999888654
No 116
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=78.09 E-value=8.6 Score=39.71 Aligned_cols=83 Identities=19% Similarity=0.149 Sum_probs=65.5
Q ss_pred HHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccH
Q 000306 80 MKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEY 159 (1691)
Q Consensus 80 ~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y 159 (1691)
.+.+.+.+|+. +.++...|..+++... ...|+..+.++..+.|+....-..+|..++.. +.|
T Consensus 6 ~~~~l~~~p~~---~~~~~~~a~~~~~~~~-----------~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~----~~~ 67 (135)
T TIGR02552 6 LKDLLGLDSEQ---LEQIYALAYNLYQQGR-----------YDEALKLFQLLAAYDPYNSRYWLGLAACCQML----KEY 67 (135)
T ss_pred HHHHHcCChhh---HHHHHHHHHHHHHccc-----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH----HHH
Confidence 45666788887 6777888888776531 25788999999999999999999999999999 589
Q ss_pred HHHHHHHHHhhcccCCCCcccc
Q 000306 160 EEVVQECERALAIENPIDPAKE 181 (1691)
Q Consensus 160 ~ea~~e~~RaL~I~~P~DPa~~ 181 (1691)
.+|...+.+++.+. |.+|..+
T Consensus 68 ~~A~~~~~~~~~~~-p~~~~~~ 88 (135)
T TIGR02552 68 EEAIDAYALAAALD-PDDPRPY 88 (135)
T ss_pred HHHHHHHHHHHhcC-CCChHHH
Confidence 99999999998873 5444443
No 117
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=77.85 E-value=13 Score=40.52 Aligned_cols=76 Identities=20% Similarity=0.173 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhh---ccCChhHHHHHHHHHHHHHHHHhhhCCC
Q 000306 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS---IIDDLNSKQRHLKNAIESAKKAAELSPH 137 (1691)
Q Consensus 61 ~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~---~~~~~~~k~~~L~~Al~~~~~A~~L~P~ 137 (1691)
..-++-+...|++.+|++..+.....+|.. +-.|..-|.+++.+++ ...+......++..|+..|.++..+.|+
T Consensus 76 ~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~---~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 76 YNIGLIHTSNGEHTKALEYYFQALERNPFL---PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 334567778899999999999988888887 6677777888887663 3445555566888999999999999998
Q ss_pred hH
Q 000306 138 SV 139 (1691)
Q Consensus 138 sl 139 (1691)
..
T Consensus 153 ~~ 154 (168)
T CHL00033 153 NY 154 (168)
T ss_pred cH
Confidence 76
No 118
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=77.56 E-value=10 Score=46.98 Aligned_cols=79 Identities=22% Similarity=0.280 Sum_probs=66.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHH
Q 000306 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVE 140 (1691)
Q Consensus 61 ~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ 140 (1691)
...|..+...|++.+|+..++.++...|.. +.+|+..|.+++.+.. ...|+.+|.+|..+.|+...
T Consensus 40 ~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~---~~a~~~lg~~~~~lg~-----------~~eA~~~~~~al~l~P~~~~ 105 (356)
T PLN03088 40 ADRAQANIKLGNFTEAVADANKAIELDPSL---AKAYLRKGTACMKLEE-----------YQTAKAALEKGASLAPGDSR 105 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---HHHHHHHHHHHHHhCC-----------HHHHHHHHHHHHHhCCCCHH
Confidence 456677888999999999999999999999 8889999999987642 25899999999999999998
Q ss_pred HHHHHHHHHHHHh
Q 000306 141 FAHFYANLLYEAA 153 (1691)
Q Consensus 141 ia~~~A~~L~~~~ 153 (1691)
+...++.....+.
T Consensus 106 ~~~~l~~~~~kl~ 118 (356)
T PLN03088 106 FTKLIKECDEKIA 118 (356)
T ss_pred HHHHHHHHHHHHH
Confidence 8887777666663
No 119
>PRK11189 lipoprotein NlpI; Provisional
Probab=77.10 E-value=7.5 Score=46.69 Aligned_cols=91 Identities=13% Similarity=0.195 Sum_probs=69.0
Q ss_pred CCHHHHHHHHHHHHHHccCchh-hHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHH
Q 000306 71 GNHKKALRLMKELSSRHENSAY-VALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLL 149 (1691)
Q Consensus 71 G~~~kAl~~~~eL~~~h~~S~~-~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L 149 (1691)
+....|++++.+++.+.+-+.. -+.+|+..|.++..... ...|+..|.+|..+.|+....-..+|.++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~-----------~~~A~~~~~~Al~l~P~~~~a~~~lg~~~ 108 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGL-----------RALARNDFSQALALRPDMADAYNYLGIYL 108 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3455677777777765543211 16778888888776642 24788999999999999999999999888
Q ss_pred HHHhccCccHHHHHHHHHHhhcccCCCC
Q 000306 150 YEAANDGKEYEEVVQECERALAIENPID 177 (1691)
Q Consensus 150 ~~~~~~~~~Y~ea~~e~~RaL~I~~P~D 177 (1691)
... +.|++|.....+||.+. |.+
T Consensus 109 ~~~----g~~~~A~~~~~~Al~l~-P~~ 131 (296)
T PRK11189 109 TQA----GNFDAAYEAFDSVLELD-PTY 131 (296)
T ss_pred HHC----CCHHHHHHHHHHHHHhC-CCC
Confidence 888 68999999999999973 443
No 120
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=76.56 E-value=11 Score=40.38 Aligned_cols=78 Identities=12% Similarity=-0.041 Sum_probs=66.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHH
Q 000306 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVE 140 (1691)
Q Consensus 61 ~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ 140 (1691)
...+.-+.+.|++.+|+..........|+. +.+|+-.|.++..+.+ . ..|+.+|.+|..+.|+..+
T Consensus 62 ~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~---~~a~~~lg~~l~~~g~----~-------~eAi~~~~~Al~~~p~~~~ 127 (144)
T PRK15359 62 IALAGTWMMLKEYTTAINFYGHALMLDASH---PEPVYQTGVCLKMMGE----P-------GLAREAFQTAIKMSYADAS 127 (144)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---cHHHHHHHHHHHHcCC----H-------HHHHHHHHHHHHhCCCChH
Confidence 344566788899999999999999999999 8999999999987753 2 4799999999999999999
Q ss_pred HHHHHHHHHHHH
Q 000306 141 FAHFYANLLYEA 152 (1691)
Q Consensus 141 ia~~~A~~L~~~ 152 (1691)
.....+.++..+
T Consensus 128 ~~~~~~~~~~~l 139 (144)
T PRK15359 128 WSEIRQNAQIMV 139 (144)
T ss_pred HHHHHHHHHHHH
Confidence 998888877766
No 121
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=76.31 E-value=5.4 Score=51.67 Aligned_cols=103 Identities=19% Similarity=0.244 Sum_probs=82.2
Q ss_pred cCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhh------------ccCC-----------hhHHHHHHHHHHH
Q 000306 70 RGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS------------IIDD-----------LNSKQRHLKNAIE 126 (1691)
Q Consensus 70 ~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~------------~~~~-----------~~~k~~~L~~Al~ 126 (1691)
.++|+.|++-.++.+...|+- +-+|-|+||-|...-. +.+. -..|+.=+..|.-
T Consensus 434 Qkdh~~Aik~f~RAiQldp~f---aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~ 510 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQLDPRF---AYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEF 510 (638)
T ss_pred hhHHHHHHHHHHHhhccCCcc---chhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHH
Confidence 478999999999999899988 7899999998876521 1111 1123333456777
Q ss_pred HHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCccc
Q 000306 127 SAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAK 180 (1691)
Q Consensus 127 ~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~~P~DPa~ 180 (1691)
.|.+|+...|.+.+|...+...+..+ |.+++|..-.++|+.+ +|.||..
T Consensus 511 ~fqkA~~INP~nsvi~~~~g~~~~~~----k~~d~AL~~~~~A~~l-d~kn~l~ 559 (638)
T KOG1126|consen 511 HFQKAVEINPSNSVILCHIGRIQHQL----KRKDKALQLYEKAIHL-DPKNPLC 559 (638)
T ss_pred HHHhhhcCCccchhHHhhhhHHHHHh----hhhhHHHHHHHHHHhc-CCCCchh
Confidence 89999999999999999999999999 6899999999999997 4777754
No 122
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=76.08 E-value=1.2 Score=50.97 Aligned_cols=42 Identities=21% Similarity=0.480 Sum_probs=30.4
Q ss_pred HHHHHHHHh----cCceeEEecccchhccCChhHHHHhhhhhhccCc
Q 000306 374 AEALAFAEE----NKTWRFWVCCRCNEKFADSESHMHHVVQQHMGNL 416 (1691)
Q Consensus 374 ~~al~fak~----n~sW~fWiCp~C~~kF~d~~~~~~Hl~~~H~~~~ 416 (1691)
.++-.|+++ ...|+ |.|+.|+|+|.-.+=-..||..+|...+
T Consensus 60 ~eve~~v~~~~~e~~~~K-~~C~lc~KlFkg~eFV~KHI~nKH~e~v 105 (214)
T PF04959_consen 60 EEVEKFVQKNTKEEDEDK-WRCPLCGKLFKGPEFVRKHIFNKHPEKV 105 (214)
T ss_dssp HHHGGGEEEEE-SSSSEE-EEE-SSS-EESSHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHcCCE-ECCCCCCcccCChHHHHHHHhhcCHHHH
Confidence 334445544 36787 9999999999999999999999998654
No 123
>PHA00616 hypothetical protein
Probab=75.49 E-value=1.5 Score=37.77 Aligned_cols=25 Identities=24% Similarity=0.579 Sum_probs=22.5
Q ss_pred ecccchhccCChhHHHHhhhhhhcc
Q 000306 390 VCCRCNEKFADSESHMHHVVQQHMG 414 (1691)
Q Consensus 390 iCp~C~~kF~d~~~~~~Hl~~~H~~ 414 (1691)
.|+.||+.|....++..|+..-|-+
T Consensus 3 qC~~CG~~F~~~s~l~~H~r~~hg~ 27 (44)
T PHA00616 3 QCLRCGGIFRKKKEVIEHLLSVHKQ 27 (44)
T ss_pred ccchhhHHHhhHHHHHHHHHHhcCC
Confidence 6999999999999999999777655
No 124
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=74.94 E-value=13 Score=49.79 Aligned_cols=110 Identities=18% Similarity=0.178 Sum_probs=87.8
Q ss_pred CchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHH
Q 000306 52 STYGAIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKA 131 (1691)
Q Consensus 52 ~~~~~ir~e~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A 131 (1691)
.+.|..-+-.+-+.+.+..|+..+||+....|-.+||++ .-+..+-|.++.++.+. .-|+.|+..-
T Consensus 4 ~~~a~~err~rpi~d~ld~~qfkkal~~~~kllkk~Pn~---~~a~vLkaLsl~r~gk~-----------~ea~~~Le~~ 69 (932)
T KOG2053|consen 4 AELAMSERRLRPIYDLLDSSQFKKALAKLGKLLKKHPNA---LYAKVLKALSLFRLGKG-----------DEALKLLEAL 69 (932)
T ss_pred hhhccHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHHhcCc-----------hhHHHHHhhh
Confidence 455667777888999999999999999999999999998 66777888888887653 2455677767
Q ss_pred hhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCcccccc
Q 000306 132 AELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKESL 183 (1691)
Q Consensus 132 ~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~~P~DPa~~~v 183 (1691)
..+-++.-.+--++-..+-++ +.|++|+.=..||+. .+|.++++
T Consensus 70 ~~~~~~D~~tLq~l~~~y~d~----~~~d~~~~~Ye~~~~----~~P~eell 113 (932)
T KOG2053|consen 70 YGLKGTDDLTLQFLQNVYRDL----GKLDEAVHLYERANQ----KYPSEELL 113 (932)
T ss_pred ccCCCCchHHHHHHHHHHHHH----hhhhHHHHHHHHHHh----hCCcHHHH
Confidence 778888777777777777777 678999988999987 46777755
No 125
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=74.77 E-value=1.6 Score=38.98 Aligned_cols=30 Identities=27% Similarity=0.451 Sum_probs=26.4
Q ss_pred eEEecccchhccCChhHHHHhhhhhhccCc
Q 000306 387 RFWVCCRCNEKFADSESHMHHVVQQHMGNL 416 (1691)
Q Consensus 387 ~fWiCp~C~~kF~d~~~~~~Hl~~~H~~~~ 416 (1691)
.|.-||+|++.|-+..++..|+---|-..+
T Consensus 16 ~~lrCPRC~~~FR~~K~Y~RHVNKaH~~~~ 45 (65)
T COG4049 16 EFLRCPRCGMVFRRRKDYIRHVNKAHGWLF 45 (65)
T ss_pred eeeeCCchhHHHHHhHHHHHHhhHHhhhhh
Confidence 588999999999999999999988886544
No 126
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=74.36 E-value=23 Score=44.88 Aligned_cols=69 Identities=13% Similarity=0.034 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhC
Q 000306 56 AIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELS 135 (1691)
Q Consensus 56 ~ir~e~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~ 135 (1691)
....-...+..++..|++++|+...+..+...|+...+..+|+-.|..+..+.. +..|++++.+|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr-----------~dEAla~LrrALels 142 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREE-----------GKKAADCLRTALRDY 142 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhc
Confidence 344556678899999999999999999898999982222557777887776642 257888888888874
No 127
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.20 E-value=23 Score=41.97 Aligned_cols=86 Identities=15% Similarity=0.063 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCCh
Q 000306 59 LECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHS 138 (1691)
Q Consensus 59 ~e~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~s 138 (1691)
++=..|++++..|++..|...-.+.+.++|+|.+.+.+|+.-|..+|.+..- ..|...|....+-.|.|
T Consensus 143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y-----------~~Aa~~f~~~~k~~P~s 211 (262)
T COG1729 143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDY-----------EDAAYIFARVVKDYPKS 211 (262)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccc-----------hHHHHHHHHHHHhCCCC
Confidence 4788999999999999999999999999999999999999999999987521 34445555555556665
Q ss_pred H---HHHHHHHHHHHHHhcc
Q 000306 139 V---EFAHFYANLLYEAAND 155 (1691)
Q Consensus 139 l---~ia~~~A~~L~~~~~~ 155 (1691)
- +--.=+|..+..+++.
T Consensus 212 ~KApdallKlg~~~~~l~~~ 231 (262)
T COG1729 212 PKAPDALLKLGVSLGRLGNT 231 (262)
T ss_pred CCChHHHHHHHHHHHHhcCH
Confidence 4 5566677888888544
No 128
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=73.45 E-value=14 Score=44.29 Aligned_cols=89 Identities=15% Similarity=0.225 Sum_probs=73.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHH
Q 000306 66 TALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFY 145 (1691)
Q Consensus 66 ~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~ 145 (1691)
++...+++.+|+..=.+.+.--|.. |+.|.=.+.+|.++. ....|+.-...|..+.|+....--.+
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~n---AVyycNRAAAy~~Lg-----------~~~~AVkDce~Al~iDp~yskay~RL 155 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTN---AVYYCNRAAAYSKLG-----------EYEDAVKDCESALSIDPHYSKAYGRL 155 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCc---chHHHHHHHHHHHhc-----------chHHHHHHHHHHHhcChHHHHHHHHH
Confidence 4667788999998888888778888 777766666666553 33578888999999999999999999
Q ss_pred HHHHHHHhccCccHHHHHHHHHHhhcc
Q 000306 146 ANLLYEAANDGKEYEEVVQECERALAI 172 (1691)
Q Consensus 146 A~~L~~~~~~~~~Y~ea~~e~~RaL~I 172 (1691)
..+++.+ +.|++|+..+++||.|
T Consensus 156 G~A~~~~----gk~~~A~~aykKaLel 178 (304)
T KOG0553|consen 156 GLAYLAL----GKYEEAIEAYKKALEL 178 (304)
T ss_pred HHHHHcc----CcHHHHHHHHHhhhcc
Confidence 9999988 6899999999999998
No 129
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=73.38 E-value=38 Score=42.45 Aligned_cols=109 Identities=15% Similarity=0.135 Sum_probs=75.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhh--------------ccCChhHHH-----HHH
Q 000306 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS--------------IIDDLNSKQ-----RHL 121 (1691)
Q Consensus 61 ~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~--------------~~~~~~~k~-----~~L 121 (1691)
...+.-....|++.+|++.++++....|++ +-++.+.+.++.+... ...+++... .|+
T Consensus 157 l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~---~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~ 233 (398)
T PRK10747 157 ITRVRIQLARNENHAARHGVDKLLEVAPRH---PEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWI 233 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 344566778899999999999999999999 7888888888876631 111122111 121
Q ss_pred H------------HHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCc
Q 000306 122 K------------NAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDP 178 (1691)
Q Consensus 122 ~------------~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~~P~DP 178 (1691)
. ........-.+-.|+...+...+|+++... |.+++|.....+++. .|.||
T Consensus 234 ~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~----g~~~~A~~~L~~~l~--~~~~~ 296 (398)
T PRK10747 234 GLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIEC----DDHDTAQQIILDGLK--RQYDE 296 (398)
T ss_pred HHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHh--cCCCH
Confidence 1 011111222245577899999999999999 688999999999998 35566
No 130
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=72.52 E-value=25 Score=44.29 Aligned_cols=98 Identities=14% Similarity=0.091 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhcc--CChhHHHHHHHHHHHHHHHHhhh
Q 000306 57 IKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASII--DDLNSKQRHLKNAIESAKKAAEL 134 (1691)
Q Consensus 57 ir~e~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~--~~~~~k~~~L~~Al~~~~~A~~L 134 (1691)
.+-....|..+...|++++|++.+.+...++|.+ ....+. .+...... +++ ..++..+.++...
T Consensus 263 ~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~---~~~~~~----~l~~~~~l~~~~~-------~~~~~~~e~~lk~ 328 (409)
T TIGR00540 263 IALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDD---RAISLP----LCLPIPRLKPEDN-------EKLEKLIEKQAKN 328 (409)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc---ccchhH----HHHHhhhcCCCCh-------HHHHHHHHHHHHh
Confidence 4444556678899999999999999999999988 321100 11111111 222 3678889999999
Q ss_pred CCChH--HHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000306 135 SPHSV--EFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1691)
Q Consensus 135 ~P~sl--~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I 172 (1691)
.|+.. .+...+|.+++.. +.|++|....++|.+.
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~----~~~~~A~~~le~a~a~ 364 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKH----GEFIEAADAFKNVAAC 364 (409)
T ss_pred CCCChhHHHHHHHHHHHHHc----ccHHHHHHHHHHhHHh
Confidence 99999 8888999999888 6899999988864554
No 131
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=71.69 E-value=18 Score=39.68 Aligned_cols=74 Identities=18% Similarity=0.179 Sum_probs=58.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhh---ccCChhHHHHHHHHHHHHHHHHhhhCCChH
Q 000306 63 RALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS---IIDDLNSKQRHLKNAIESAKKAAELSPHSV 139 (1691)
Q Consensus 63 ~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~---~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl 139 (1691)
-+..+.+.|++.+|++...+.+..+|.. +.++..-|.++..++. ...+.+....++..|++++.++..+.|+..
T Consensus 78 la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 78 MGIIYASNGEHDKALEYYHQALELNPKQ---PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 3466788899999999999999999988 6777777888877643 223444456677899999999999999874
No 132
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=71.65 E-value=2.7 Score=37.65 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=22.4
Q ss_pred ecccchhccCChhHHHHhhhhhhccC
Q 000306 390 VCCRCNEKFADSESHMHHVVQQHMGN 415 (1691)
Q Consensus 390 iCp~C~~kF~d~~~~~~Hl~~~H~~~ 415 (1691)
.||+|++ -.+..+|+.|+..+|...
T Consensus 4 ~CP~C~~-~~~~~~L~~H~~~~H~~~ 28 (54)
T PF05605_consen 4 TCPYCGK-GFSESSLVEHCEDEHRSE 28 (54)
T ss_pred CCCCCCC-ccCHHHHHHHHHhHCcCC
Confidence 5999999 677899999999999875
No 133
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=70.12 E-value=13 Score=37.03 Aligned_cols=68 Identities=12% Similarity=0.031 Sum_probs=54.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHH
Q 000306 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVE 140 (1691)
Q Consensus 62 ~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ 140 (1691)
..+.-+++.|++..|+...+++...+|++.+.+.++...|.++.++. +. ..|+..+.++..+.|++..
T Consensus 44 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~----~~-------~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 44 WLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELG----DK-------EKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhC----Ch-------HHHHHHHHHHHHHCcCChh
Confidence 35677889999999999999999999987555677788888877543 22 4788999999999999864
No 134
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=69.77 E-value=23 Score=38.31 Aligned_cols=66 Identities=20% Similarity=0.169 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHH
Q 000306 59 LECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIES 127 (1691)
Q Consensus 59 ~e~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~ 127 (1691)
+-.++|...+..|++.-|+++++-|+...|+. .-+..+...++.+++...+++..|.-||-.|.+.
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n---~~ar~l~A~al~~lg~~~~~~~~Rn~yL~~A~EL 137 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFADPDN---EEARQLKADALEQLGYQSENANWRNYYLTGAKEL 137 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT----HHHHHHHHHHHHHHHHH-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 45566777889999999999999999999998 7899999999999999999999999999888765
No 135
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=69.71 E-value=16 Score=42.86 Aligned_cols=77 Identities=17% Similarity=0.175 Sum_probs=59.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChH
Q 000306 60 ECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSV 139 (1691)
Q Consensus 60 e~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl 139 (1691)
...-|-...+.|+++.|+.-+++.+..||+|..++-|.++.|..++.. +++++--..+-+.|...+..-+.-.|||=
T Consensus 74 ~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~---i~~~~rDq~~~~~A~~~f~~~i~ryPnS~ 150 (254)
T COG4105 74 QLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQ---IDDVTRDQSAARAAFAAFKELVQRYPNSR 150 (254)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcc---CCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence 344456677888888888888888888888877888888888886643 45555456688899999999999999985
No 136
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=68.37 E-value=61 Score=42.34 Aligned_cols=91 Identities=13% Similarity=0.107 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhh--CCChHHHHHHHHHHHH
Q 000306 73 HKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAEL--SPHSVEFAHFYANLLY 150 (1691)
Q Consensus 73 ~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L--~P~sl~ia~~~A~~L~ 150 (1691)
+.+|+...++.++..|+. +.+|-..+..+..... ..+ .....+..+.+.+.+|..+ .|..-.+...+| +.
T Consensus 358 ~~~A~~lle~Ai~ldP~~---a~a~A~la~~~~~~~~-~~~--~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala--~~ 429 (517)
T PRK10153 358 LNKASDLLEEILKSEPDF---TYAQAEKALADIVRHS-QQP--LDEKQLAALSTELDNIVALPELNVLPRIYEILA--VQ 429 (517)
T ss_pred HHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHHh-cCC--ccHHHHHHHHHHHHHhhhcccCcCChHHHHHHH--HH
Confidence 668998889999999998 6666655555433322 111 1123445666666676664 555543333333 33
Q ss_pred HHhccCccHHHHHHHHHHhhccc
Q 000306 151 EAANDGKEYEEVVQECERALAIE 173 (1691)
Q Consensus 151 ~~~~~~~~Y~ea~~e~~RaL~I~ 173 (1691)
.+. .+.|++|.++..||+.+.
T Consensus 430 ~~~--~g~~~~A~~~l~rAl~L~ 450 (517)
T PRK10153 430 ALV--KGKTDEAYQAINKAIDLE 450 (517)
T ss_pred HHh--cCCHHHHHHHHHHHHHcC
Confidence 332 268999999999999985
No 137
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=67.75 E-value=4.8 Score=32.56 Aligned_cols=33 Identities=39% Similarity=0.527 Sum_probs=29.6
Q ss_pred HHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHH
Q 000306 127 SAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVV 163 (1691)
Q Consensus 127 ~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~ 163 (1691)
||.+|.++.|+..+.-.-+|.+|... |+|++|.
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~----g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQ----GDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHC----cCHHhhc
Confidence 58999999999999999999999988 5788875
No 138
>smart00355 ZnF_C2H2 zinc finger.
Probab=67.53 E-value=3.6 Score=29.87 Aligned_cols=24 Identities=21% Similarity=0.517 Sum_probs=20.9
Q ss_pred EecccchhccCChhHHHHhhhhhhc
Q 000306 389 WVCCRCNEKFADSESHMHHVVQQHM 413 (1691)
Q Consensus 389 WiCp~C~~kF~d~~~~~~Hl~~~H~ 413 (1691)
+.|+.|++.|.+...+..|+. .|.
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~-~H~ 24 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMR-THX 24 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHH-Hhc
Confidence 369999999999999999997 654
No 139
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=67.28 E-value=6.1 Score=30.52 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=23.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHccCc
Q 000306 64 ALTALRRGNHKKALRLMKELSSRHENS 90 (1691)
Q Consensus 64 al~~~~~G~~~kAl~~~~eL~~~h~~S 90 (1691)
|.-..+.|++++|++..++++.+||+|
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 455667899999999999999999987
No 140
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=67.14 E-value=2.5 Score=32.33 Aligned_cols=22 Identities=18% Similarity=0.560 Sum_probs=20.1
Q ss_pred EecccchhccCChhHHHHhhhh
Q 000306 389 WVCCRCNEKFADSESHMHHVVQ 410 (1691)
Q Consensus 389 WiCp~C~~kF~d~~~~~~Hl~~ 410 (1691)
|.|..|++.|.+...+..|+..
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTS
T ss_pred CCcccCCCCcCCHHHHHHHHcc
Confidence 5799999999999999999865
No 141
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=66.33 E-value=3.9 Score=40.12 Aligned_cols=25 Identities=28% Similarity=0.590 Sum_probs=21.9
Q ss_pred EEecccchhccCChhHHHHhhhhhh
Q 000306 388 FWVCCRCNEKFADSESHMHHVVQQH 412 (1691)
Q Consensus 388 fWiCp~C~~kF~d~~~~~~Hl~~~H 412 (1691)
-|.|+.|++.|.+.+.+..||...|
T Consensus 50 ~~~C~~C~~~f~s~~~l~~Hm~~~~ 74 (100)
T PF12756_consen 50 SFRCPYCNKTFRSREALQEHMRSKH 74 (100)
T ss_dssp SEEBSSSS-EESSHHHHHHHHHHTT
T ss_pred CCCCCccCCCCcCHHHHHHHHcCcc
Confidence 5999999999999999999998764
No 142
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=65.71 E-value=17 Score=42.83 Aligned_cols=71 Identities=23% Similarity=0.275 Sum_probs=57.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHH
Q 000306 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEF 141 (1691)
Q Consensus 62 ~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~i 141 (1691)
.++++.++.||..+|..--+.|.++||+|..+.-+....+..+|+-. + ..-|+..+.+=.+|.|++.++
T Consensus 39 ~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~----~-------y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 39 NEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNG----E-------YDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcc----c-------HHHHHHHHHHHHHhCCCCCCh
Confidence 56788999999999999999999999999766666666666666432 2 247888999999999999876
Q ss_pred HH
Q 000306 142 AH 143 (1691)
Q Consensus 142 a~ 143 (1691)
+-
T Consensus 108 dY 109 (254)
T COG4105 108 DY 109 (254)
T ss_pred hH
Confidence 53
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=65.12 E-value=54 Score=34.87 Aligned_cols=103 Identities=13% Similarity=0.173 Sum_probs=67.3
Q ss_pred CchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHH
Q 000306 52 STYGAIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKA 131 (1691)
Q Consensus 52 ~~~~~ir~e~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A 131 (1691)
.+.-+....-.-|...+..|+.++|++..+.++...|.....++++.--+.+.++.. +. ..|+..+...
T Consensus 43 ~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~----~~-------d~Al~~L~~~ 111 (145)
T PF09976_consen 43 SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQG----QY-------DEALATLQQI 111 (145)
T ss_pred CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC----CH-------HHHHHHHHhc
Confidence 333455666667788889999999999999999887665444566555566666543 22 2455555332
Q ss_pred hhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhh
Q 000306 132 AELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERAL 170 (1691)
Q Consensus 132 ~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL 170 (1691)
.. .+-.-......+.+++.. |.|++|......||
T Consensus 112 ~~-~~~~~~~~~~~Gdi~~~~----g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 112 PD-EAFKALAAELLGDIYLAQ----GDYDEARAAYQKAL 145 (145)
T ss_pred cC-cchHHHHHHHHHHHHHHC----CCHHHHHHHHHHhC
Confidence 21 111223455667777776 68999998888875
No 144
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=64.78 E-value=42 Score=39.58 Aligned_cols=122 Identities=17% Similarity=0.248 Sum_probs=85.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHH
Q 000306 64 ALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAH 143 (1691)
Q Consensus 64 al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~ 143 (1691)
+-.+.-+|+-+.++..+-.++..||.+ .=+|+.+|....... -+..|+..+++|+++.|+.-+.=.
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~~~~d---~~ll~~~gk~~~~~g-----------~~~~A~~~~rkA~~l~p~d~~~~~ 138 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIAYPKD---RELLAAQGKNQIRNG-----------NFGEAVSVLRKAARLAPTDWEAWN 138 (257)
T ss_pred HHHHHhcccccchHHHHhhhhccCccc---HHHHHHHHHHHHHhc-----------chHHHHHHHHHHhccCCCChhhhh
Confidence 344455677778888888888888888 666666777776554 235899999999999999999999
Q ss_pred HHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCc-cccccchhhhHhhhchHHHHHHHHHHHHHHH
Q 000306 144 FYANLLYEAANDGKEYEEVVQECERALAIENPIDP-AKESLQDESQQKILTADARIAHVQSELRSLI 209 (1691)
Q Consensus 144 ~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~~P~DP-a~~~v~~~~~~~~~~~~~rv~~~~~el~~li 209 (1691)
.++-.|-.+ |..++|...+..|+..- |-+| ..+|+.+-. -...+.+.+++.|+.+.
T Consensus 139 ~lgaaldq~----Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~-----~L~gd~~~A~~lll~a~ 195 (257)
T COG5010 139 LLGAALDQL----GRFDEARRAYRQALELA-PNEPSIANNLGMSL-----LLRGDLEDAETLLLPAY 195 (257)
T ss_pred HHHHHHHHc----cChhHHHHHHHHHHHhc-cCCchhhhhHHHHH-----HHcCCHHHHHHHHHHHH
Confidence 999888888 57899999999999873 3333 233443222 22334455555554444
No 145
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=63.84 E-value=28 Score=42.27 Aligned_cols=102 Identities=18% Similarity=0.177 Sum_probs=85.7
Q ss_pred CchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHH
Q 000306 52 STYGAIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKA 131 (1691)
Q Consensus 52 ~~~~~ir~e~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A 131 (1691)
.+.+.+.++-|---.++.+|....||..-...+.-.|++ ..+.+-.|++|.++.+. ++|+.=+++-
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~---Y~aifrRaT~yLAmGks-----------k~al~Dl~rV 98 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN---YQAIFRRATVYLAMGKS-----------KAALQDLSRV 98 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh---HHHHHHHHHHHhhhcCC-----------ccchhhHHHH
Confidence 344778888888889999999999998888888888999 99999999999999864 5788889999
Q ss_pred hhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhc
Q 000306 132 AELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALA 171 (1691)
Q Consensus 132 ~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~ 171 (1691)
..|-|+=..--.-++.+|+.. |.|+.|++..+.-|.
T Consensus 99 lelKpDF~~ARiQRg~vllK~----Gele~A~~DF~~vl~ 134 (504)
T KOG0624|consen 99 LELKPDFMAARIQRGVVLLKQ----GELEQAEADFDQVLQ 134 (504)
T ss_pred HhcCccHHHHHHHhchhhhhc----ccHHHHHHHHHHHHh
Confidence 999999776666677788877 589999998876665
No 146
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=63.75 E-value=16 Score=46.20 Aligned_cols=70 Identities=19% Similarity=0.009 Sum_probs=54.3
Q ss_pred HccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHH---HHHHHHHHHHHhccCccHHHH
Q 000306 86 RHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEF---AHFYANLLYEAANDGKEYEEV 162 (1691)
Q Consensus 86 ~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~i---a~~~A~~L~~~~~~~~~Y~ea 162 (1691)
..|+. +.+|+-.|.+++++.+ ...|+.+|.+|..+.|+..+. -.-+|-.+..+ |.+++|
T Consensus 70 ~dP~~---a~a~~NLG~AL~~lGr-----------yeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~L----Gr~dEA 131 (453)
T PLN03098 70 ADVKT---AEDAVNLGLSLFSKGR-----------VKDALAQFETALELNPNPDEAQAAYYNKACCHAYR----EEGKKA 131 (453)
T ss_pred CCCCC---HHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHc----CCHHHH
Confidence 34666 7788888888876642 268999999999999998865 34455555555 689999
Q ss_pred HHHHHHhhccc
Q 000306 163 VQECERALAIE 173 (1691)
Q Consensus 163 ~~e~~RaL~I~ 173 (1691)
.....+||.+.
T Consensus 132 la~LrrALels 142 (453)
T PLN03098 132 ADCLRTALRDY 142 (453)
T ss_pred HHHHHHHHHhc
Confidence 99999999984
No 147
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=62.97 E-value=4.4 Score=30.77 Aligned_cols=19 Identities=26% Similarity=0.543 Sum_probs=16.2
Q ss_pred ecccchhccCChhHHHHhhh
Q 000306 390 VCCRCNEKFADSESHMHHVV 409 (1691)
Q Consensus 390 iCp~C~~kF~d~~~~~~Hl~ 409 (1691)
.||.||++| ..+++..|+.
T Consensus 4 ~C~~CgR~F-~~~~l~~H~~ 22 (25)
T PF13913_consen 4 PCPICGRKF-NPDRLEKHEK 22 (25)
T ss_pred cCCCCCCEE-CHHHHHHHHH
Confidence 599999999 7888888863
No 148
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.87 E-value=26 Score=42.39 Aligned_cols=98 Identities=19% Similarity=0.160 Sum_probs=56.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhh-CCChHHHH
Q 000306 64 ALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAEL-SPHSVEFA 142 (1691)
Q Consensus 64 al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L-~P~sl~ia 142 (1691)
|--++.||+|.+|-..=++|..+||.+ -++....-+.|+-.... .....++.+-.-- .|+-.-+.
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtD---lla~kfsh~a~fy~G~~-----------~~~k~ai~kIip~wn~dlp~~s 175 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTD---LLAVKFSHDAHFYNGNQ-----------IGKKNAIEKIIPKWNADLPCYS 175 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchh---hhhhhhhhhHHHhccch-----------hhhhhHHHHhccccCCCCcHHH
Confidence 345788999999988899999999997 33333332333322211 0111111111111 22221122
Q ss_pred H---HHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCccc
Q 000306 143 H---FYANLLYEAANDGKEYEEVVQECERALAIENPIDPAK 180 (1691)
Q Consensus 143 ~---~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~~P~DPa~ 180 (1691)
. .+|--|.++ |.|++|+..++|||.| ||.|--.
T Consensus 176 Yv~GmyaFgL~E~----g~y~dAEk~A~ralqi-N~~D~Wa 211 (491)
T KOG2610|consen 176 YVHGMYAFGLEEC----GIYDDAEKQADRALQI-NRFDCWA 211 (491)
T ss_pred HHHHHHHhhHHHh----ccchhHHHHHHhhccC-CCcchHH
Confidence 2 345556666 6899999999999998 5666543
No 149
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=62.20 E-value=36 Score=44.37 Aligned_cols=52 Identities=12% Similarity=0.083 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCcc
Q 000306 122 KNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPA 179 (1691)
Q Consensus 122 ~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~~P~DPa 179 (1691)
..|...+.+|..|.|+ ...-.++++++... |.+++|...+.||+.+ +|.+|-
T Consensus 437 ~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~----G~~~eA~~~~~~A~~L-~P~~pt 488 (517)
T PRK10153 437 DEAYQAINKAIDLEMS-WLNYVLLGKVYELK----GDNRLAADAYSTAFNL-RPGENT 488 (517)
T ss_pred HHHHHHHHHHHHcCCC-HHHHHHHHHHHHHc----CCHHHHHHHHHHHHhc-CCCCch
Confidence 5799999999999996 44555556666666 6899999999999987 477773
No 150
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=61.44 E-value=57 Score=39.22 Aligned_cols=98 Identities=18% Similarity=0.152 Sum_probs=71.7
Q ss_pred HHHcCCHHHHH---HHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHH
Q 000306 67 ALRRGNHKKAL---RLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAH 143 (1691)
Q Consensus 67 ~~~~G~~~kAl---~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~ 143 (1691)
..+.|+...|+ ..|-+|. |.. +-+.-.-|.++|..+....++ .+-+.+.+|..+.|+.|..-.
T Consensus 166 ym~~~~~~~A~~AY~~A~rL~---g~n---~~~~~g~aeaL~~~a~~~~ta--------~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 166 YMALGRASDALLAYRNALRLA---GDN---PEILLGLAEALYYQAGQQMTA--------KARALLRQALALDPANIRALS 231 (287)
T ss_pred HHHhcchhHHHHHHHHHHHhC---CCC---HHHHHHHHHHHHHhcCCcccH--------HHHHHHHHHHhcCCccHHHHH
Confidence 44556655554 4444444 666 666666788888777554444 577889999999999999999
Q ss_pred HHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCccccc
Q 000306 144 FYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKES 182 (1691)
Q Consensus 144 ~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~~P~DPa~~~ 182 (1691)
++|...|+- +.|++|..--..=|....|.||...-
T Consensus 232 lLA~~afe~----g~~~~A~~~Wq~lL~~lp~~~~rr~~ 266 (287)
T COG4235 232 LLAFAAFEQ----GDYAEAAAAWQMLLDLLPADDPRRSL 266 (287)
T ss_pred HHHHHHHHc----ccHHHHHHHHHHHHhcCCCCCchHHH
Confidence 999999999 68999987776667766666666553
No 151
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=61.25 E-value=23 Score=47.94 Aligned_cols=112 Identities=20% Similarity=0.162 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhC
Q 000306 56 AIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELS 135 (1691)
Q Consensus 56 ~ir~e~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~ 135 (1691)
-|..=.=+|.-++.+||+..||..-+.+....|... |-+...-|+-|.++.. + .-|+-++.+|..|.
T Consensus 163 Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~--aD~rIgig~Cf~kl~~----~-------~~a~~a~~ralqLd 229 (1018)
T KOG2002|consen 163 NILALLGKARIAYNKKDYRGALKYYKKALRINPACK--ADVRIGIGHCFWKLGM----S-------EKALLAFERALQLD 229 (1018)
T ss_pred chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC--CCccchhhhHHHhccc----h-------hhHHHHHHHHHhcC
Confidence 344445567778889999999999998777777754 4455555766666532 2 47889999999999
Q ss_pred CChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCccccc
Q 000306 136 PHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKES 182 (1691)
Q Consensus 136 P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~~P~DPa~~~ 182 (1691)
|.||.....+|-+.+..- +...|+.++.-..||-.+ +|-+|-.-+
T Consensus 230 p~~v~alv~L~~~~l~~~-d~~s~~~~~~ll~~ay~~-n~~nP~~l~ 274 (1018)
T KOG2002|consen 230 PTCVSALVALGEVDLNFN-DSDSYKKGVQLLQRAYKE-NNENPVALN 274 (1018)
T ss_pred hhhHHHHHHHHHHHHHcc-chHHHHHHHHHHHHHHhh-cCCCcHHHH
Confidence 999999999998887773 335899999999999987 566665443
No 152
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=59.89 E-value=84 Score=33.19 Aligned_cols=102 Identities=14% Similarity=0.147 Sum_probs=59.4
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchh------hHHH---HHhhchhhHHHhhccCChhHHHHHHHH
Q 000306 53 TYGAIKLECERALTALRRGNHKKALRLMKELSSRHENSAY------VALI---HRVQGTVCVKVASIIDDLNSKQRHLKN 123 (1691)
Q Consensus 53 ~~~~ir~e~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~------~a~~---h~lqG~i~~~~a~~~~~~~~k~~~L~~ 123 (1691)
|.......++.+....+.|++..|+....+.++-+.|.-. .|+. .+++. .+..+....-...........
T Consensus 2 D~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~-~~~~~~~~l~~~~~~~~~~~~ 80 (146)
T PF03704_consen 2 DVDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRE-LYLDALERLAEALLEAGDYEE 80 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHH-HHHHHHHHHHHHHHHTT-HHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHH-HHHHHHHHHHHHHHhccCHHH
Confidence 3455667788888899999999999999998888855311 0111 11111 111111110001111112357
Q ss_pred HHHHHHHHhhhCCChHHHHHHHHHHHHHHhcc
Q 000306 124 AIESAKKAAELSPHSVEFAHFYANLLYEAAND 155 (1691)
Q Consensus 124 Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~ 155 (1691)
|+..+.++..+.|-.=..-..+-+++..+|+.
T Consensus 81 a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~ 112 (146)
T PF03704_consen 81 ALRLLQRALALDPYDEEAYRLLMRALAAQGRR 112 (146)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCH
Confidence 89999999999999888888888888888543
No 153
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=59.78 E-value=5 Score=30.36 Aligned_cols=22 Identities=18% Similarity=0.430 Sum_probs=19.5
Q ss_pred ecccchhccCChhHHHHhhhhh
Q 000306 390 VCCRCNEKFADSESHMHHVVQQ 411 (1691)
Q Consensus 390 iCp~C~~kF~d~~~~~~Hl~~~ 411 (1691)
.|..|++.|.+...|..|+..-
T Consensus 3 ~C~~C~~~F~~~~~l~~H~~~h 24 (27)
T PF13912_consen 3 ECDECGKTFSSLSALREHKRSH 24 (27)
T ss_dssp EETTTTEEESSHHHHHHHHCTT
T ss_pred CCCccCCccCChhHHHHHhHHh
Confidence 5999999999999999999443
No 154
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=58.14 E-value=71 Score=43.32 Aligned_cols=93 Identities=23% Similarity=0.270 Sum_probs=69.7
Q ss_pred CchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHH
Q 000306 52 STYGAIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKA 131 (1691)
Q Consensus 52 ~~~~~ir~e~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A 131 (1691)
++...+-..+.+| +...|++.+||+..-.++..-+.-. +.+...+|..++++. +-..|.++|-.+
T Consensus 411 ~d~~dL~~d~a~a--l~~~~~~~~Al~~l~~i~~~~~~~~--~~vw~~~a~c~~~l~-----------e~e~A~e~y~kv 475 (895)
T KOG2076|consen 411 SDDVDLYLDLADA--LTNIGKYKEALRLLSPITNREGYQN--AFVWYKLARCYMELG-----------EYEEAIEFYEKV 475 (895)
T ss_pred hhhHHHHHHHHHH--HHhcccHHHHHHHHHHHhcCccccc--hhhhHHHHHHHHHHh-----------hHHHHHHHHHHH
Confidence 4445555555555 4578999999999999995544332 455566666666553 447899999999
Q ss_pred hhhCCChHHHHHHHHHHHHHHhccCccHHHHH
Q 000306 132 AELSPHSVEFAHFYANLLYEAANDGKEYEEVV 163 (1691)
Q Consensus 132 ~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~ 163 (1691)
..+.|++++.=.-+|.++..+|+ .++|+
T Consensus 476 l~~~p~~~D~Ri~Lasl~~~~g~----~Ekal 503 (895)
T KOG2076|consen 476 LILAPDNLDARITLASLYQQLGN----HEKAL 503 (895)
T ss_pred HhcCCCchhhhhhHHHHHHhcCC----HHHHH
Confidence 99999999999999999999964 46665
No 155
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=57.72 E-value=38 Score=43.63 Aligned_cols=56 Identities=21% Similarity=0.185 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCccccc
Q 000306 122 KNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKES 182 (1691)
Q Consensus 122 ~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~~P~DPa~~~ 182 (1691)
..|..||..|.+|+|.|=.=..+.+.-.-.+ +-++.|..=...|++|. |.||-.-+
T Consensus 363 dQAmaaY~tAarl~~G~hlP~LYlgmey~~t----~n~kLAe~Ff~~A~ai~-P~Dplv~~ 418 (611)
T KOG1173|consen 363 DQAMAAYFTAARLMPGCHLPSLYLGMEYMRT----NNLKLAEKFFKQALAIA-PSDPLVLH 418 (611)
T ss_pred HHHHHHHHHHHHhccCCcchHHHHHHHHHHh----ccHHHHHHHHHHHHhcC-CCcchhhh
Confidence 5689999999999999988877777766666 46788888888899984 89987543
No 156
>PRK11906 transcriptional regulator; Provisional
Probab=57.23 E-value=90 Score=39.88 Aligned_cols=115 Identities=8% Similarity=-0.064 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHHHHHcCC---HHHHHHHHHHHH---HHccCchhhHHHHHhhchhhHHHhh-ccCChhHHHHHHHHHHHH
Q 000306 55 GAIKLECERALTALRRGN---HKKALRLMKELS---SRHENSAYVALIHRVQGTVCVKVAS-IIDDLNSKQRHLKNAIES 127 (1691)
Q Consensus 55 ~~ir~e~~~al~~~~~G~---~~kAl~~~~eL~---~~h~~S~~~a~~h~lqG~i~~~~a~-~~~~~~~k~~~L~~Al~~ 127 (1691)
+-|-...-+++..+.+|. ...|+.+..+.+ .-.|+- +.+|...+..|+..+- ...+ ...-...|+..
T Consensus 253 a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~---a~a~~~lA~~h~~~~~~g~~~---~~~~~~~a~~~ 326 (458)
T PRK11906 253 HYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLK---TECYCLLAECHMSLALHGKSE---LELAAQKALEL 326 (458)
T ss_pred chhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCccc---HHHHHHHHHHHHHHHHhcCCC---chHHHHHHHHH
Confidence 344445777777777776 556777777777 555666 8888888888877642 2222 23455789999
Q ss_pred HHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCccc
Q 000306 128 AKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAK 180 (1691)
Q Consensus 128 ~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~~P~DPa~ 180 (1691)
+.+|+++.|+.-..-..+|.++...+ .|+.|....+||+.+ +|..+..
T Consensus 327 A~rAveld~~Da~a~~~~g~~~~~~~----~~~~a~~~f~rA~~L-~Pn~A~~ 374 (458)
T PRK11906 327 LDYVSDITTVDGKILAIMGLITGLSG----QAKVSHILFEQAKIH-STDIASL 374 (458)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHhhc----chhhHHHHHHHHhhc-CCccHHH
Confidence 99999999999888888888887773 599999999999997 3444433
No 157
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=56.93 E-value=21 Score=46.00 Aligned_cols=85 Identities=19% Similarity=0.210 Sum_probs=65.1
Q ss_pred cCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHH
Q 000306 70 RGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLL 149 (1691)
Q Consensus 70 ~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L 149 (1691)
.|.+++|..--+-.....|+. +++-+--|-....-. -. .-|+.+|.+|..|-|+=|..=.=+|-.-
T Consensus 443 s~efdraiDcf~~AL~v~Pnd---~~lWNRLGAtLAN~~----~s-------~EAIsAY~rALqLqP~yVR~RyNlgIS~ 508 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQVKPND---YLLWNRLGATLANGN----RS-------EEAISAYNRALQLQPGYVRVRYNLGISC 508 (579)
T ss_pred chHHHHHHHHHHHHHhcCCch---HHHHHHhhHHhcCCc----cc-------HHHHHHHHHHHhcCCCeeeeehhhhhhh
Confidence 477888887777777788888 666665554433221 11 4799999999999999997777777777
Q ss_pred HHHhccCccHHHHHHHHHHhhcc
Q 000306 150 YEAANDGKEYEEVVQECERALAI 172 (1691)
Q Consensus 150 ~~~~~~~~~Y~ea~~e~~RaL~I 172 (1691)
..+ |.|+||+...-+||.+
T Consensus 509 mNl----G~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 509 MNL----GAYKEAVKHLLEALSM 527 (579)
T ss_pred hhh----hhHHHHHHHHHHHHHh
Confidence 777 6999999999999998
No 158
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=56.85 E-value=58 Score=43.42 Aligned_cols=102 Identities=15% Similarity=0.146 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHccC--chhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHH
Q 000306 73 HKKALRLMKELSSRHEN--SAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLY 150 (1691)
Q Consensus 73 ~~kAl~~~~eL~~~h~~--S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~ 150 (1691)
..+++.-|.+.++..++ +-..++.+++.|--+-.+|+..-...-|.+++.-+|+++.+|+.+.|+.. -+.||..+-+
T Consensus 410 ~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp-~~if~lalq~ 488 (799)
T KOG4162|consen 410 VEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP-LVIFYLALQY 488 (799)
T ss_pred hhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc-hHHHHHHHHH
Confidence 33455445554442211 33458999999998888898877888889999999999999999999998 4555555555
Q ss_pred HHhccCccHHHHHHHHHHhhcccCCCCc
Q 000306 151 EAANDGKEYEEVVQECERALAIENPIDP 178 (1691)
Q Consensus 151 ~~~~~~~~Y~ea~~e~~RaL~I~~P~DP 178 (1691)
..- ...+.|...|+|+|++-.-.++
T Consensus 489 A~~---R~l~sAl~~~~eaL~l~~~~~~ 513 (799)
T KOG4162|consen 489 AEQ---RQLTSALDYAREALALNRGDSA 513 (799)
T ss_pred HHH---HhHHHHHHHHHHHHHhcCCccH
Confidence 553 3578999999999998433333
No 159
>PRK14574 hmsH outer membrane protein; Provisional
Probab=56.68 E-value=75 Score=43.85 Aligned_cols=112 Identities=10% Similarity=0.014 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhh----HHHHHhhchhhHHHh---hccC--C---hhHH---HHHH
Q 000306 57 IKLECERALTALRRGNHKKALRLMKELSSRHENSAYV----ALIHRVQGTVCVKVA---SIID--D---LNSK---QRHL 121 (1691)
Q Consensus 57 ir~e~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~----a~~h~lqG~i~~~~a---~~~~--~---~~~k---~~~L 121 (1691)
+...=+.|+-.++.|+++.|+....++....|.+..+ +.+....|..-.++. +.++ + .... ..|+
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~ 113 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYR 113 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 3455678899999999999999999999999998311 122222333332221 1111 1 0111 0122
Q ss_pred -----HHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000306 122 -----KNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1691)
Q Consensus 122 -----~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I 172 (1691)
..|++.|.++..+.|+...+-..+|.++... +.+++|...+.+++..
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~----~q~~eAl~~l~~l~~~ 165 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADA----GRGGVVLKQATELAER 165 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhc----CCHHHHHHHHHHhccc
Confidence 4789999999999999977666555555555 6889999888888765
No 160
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=56.55 E-value=57 Score=41.93 Aligned_cols=90 Identities=22% Similarity=0.333 Sum_probs=74.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHH
Q 000306 65 LTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHF 144 (1691)
Q Consensus 65 l~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~ 144 (1691)
-.+|+.|++.+|++.-.+.+.+.|++ +.+..=.+.-|..+. ..-.||.....+.+|.|+-+.-=..
T Consensus 366 ne~Fk~gdy~~Av~~YteAIkr~P~D---a~lYsNRAac~~kL~-----------~~~~aL~Da~~~ieL~p~~~kgy~R 431 (539)
T KOG0548|consen 366 NEAFKKGDYPEAVKHYTEAIKRDPED---ARLYSNRAACYLKLG-----------EYPEALKDAKKCIELDPNFIKAYLR 431 (539)
T ss_pred HHHHhccCHHHHHHHHHHHHhcCCch---hHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHhcCchHHHHHHH
Confidence 67899999999999999999999999 777776666666554 3456777888899999998877777
Q ss_pred HHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000306 145 YANLLYEAANDGKEYEEVVQECERALAI 172 (1691)
Q Consensus 145 ~A~~L~~~~~~~~~Y~ea~~e~~RaL~I 172 (1691)
=|..|+.+ +.|.+|..-+..||..
T Consensus 432 Kg~al~~m----k~ydkAleay~eale~ 455 (539)
T KOG0548|consen 432 KGAALRAM----KEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHhc
Confidence 78888888 7899999888888875
No 161
>PHA02768 hypothetical protein; Provisional
Probab=56.02 E-value=6.3 Score=35.70 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=20.9
Q ss_pred ecccchhccCChhHHHHhhhhhhc
Q 000306 390 VCCRCNEKFADSESHMHHVVQQHM 413 (1691)
Q Consensus 390 iCp~C~~kF~d~~~~~~Hl~~~H~ 413 (1691)
.|+.||+.|+....|..|+.. |.
T Consensus 7 ~C~~CGK~Fs~~~~L~~H~r~-H~ 29 (55)
T PHA02768 7 ECPICGEIYIKRKSMITHLRK-HN 29 (55)
T ss_pred CcchhCCeeccHHHHHHHHHh-cC
Confidence 699999999999999999976 54
No 162
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=55.62 E-value=6.8 Score=49.33 Aligned_cols=55 Identities=16% Similarity=0.259 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhccc
Q 000306 115 NSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIE 173 (1691)
Q Consensus 115 ~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~ 173 (1691)
..|..++..|++.|++|.+|.|||..+..-+|.+.+.. +.|..|++.|..|+...
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~----e~~~~Al~Da~kaie~d 68 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKV----ESFGGALHDALKAIELD 68 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheee----chhhhHHHHHHhhhhcC
Confidence 34555778999999999999999999999999777777 68999999999999874
No 163
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=55.00 E-value=1.7e+02 Score=33.64 Aligned_cols=99 Identities=21% Similarity=0.273 Sum_probs=66.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHH
Q 000306 66 TALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFY 145 (1691)
Q Consensus 66 ~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~ 145 (1691)
.+|.+|++.+|..--.+...--|.- -..++.-+|-.-|. +-+|.+-...|++..++|..|-|.-..--..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~-----~~e~rsIly~Nraa----a~iKl~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPST-----STEERSILYSNRAA----ALIKLRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccc-----cHHHHHHHHhhhHH----HHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 4677888888876555444333321 11333333333321 23566666789999999999999877766777
Q ss_pred HHHHHHHhccCccHHHHHHHHHHhhcccCCCCcccc
Q 000306 146 ANLLYEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1691)
Q Consensus 146 A~~L~~~~~~~~~Y~ea~~e~~RaL~I~~P~DPa~~ 181 (1691)
|.++-.+ ..|++|+..++.-|.+ ||..+
T Consensus 175 Aeayek~----ek~eealeDyKki~E~----dPs~~ 202 (271)
T KOG4234|consen 175 AEAYEKM----EKYEEALEDYKKILES----DPSRR 202 (271)
T ss_pred HHHHHhh----hhHHHHHHHHHHHHHh----CcchH
Confidence 8877777 5799999888887775 66655
No 164
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=54.79 E-value=57 Score=40.82 Aligned_cols=111 Identities=18% Similarity=0.151 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhH------------HHhhccCC----------
Q 000306 56 AIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCV------------KVASIIDD---------- 113 (1691)
Q Consensus 56 ~ir~e~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~------------~~a~~~~~---------- 113 (1691)
-.+.+.-+|--+.--|+.++|...+-+.-.-.+.. +-++.+.|.+.| +.|-.+++
T Consensus 168 c~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n---~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~ 244 (486)
T KOG0550|consen 168 CFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATN---AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASM 244 (486)
T ss_pred hhHHHHhhhhhhhhcccchhHHHHHHHHHhcccch---hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhh
Confidence 34444444444444577778877777666555666 556666665543 22222221
Q ss_pred -------------hhHHHHHHHHHHHHHHHHhhhCCChHHHHHH----HHHHHHHHhccCccHHHHHHHHHHhhccc
Q 000306 114 -------------LNSKQRHLKNAIESAKKAAELSPHSVEFAHF----YANLLYEAANDGKEYEEVVQECERALAIE 173 (1691)
Q Consensus 114 -------------~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~----~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~ 173 (1691)
-.-|.=+++-|-+||++|..+.|+++.+-+. +|.+.+-+ +.-++|+..|.+||.|.
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rL----grl~eaisdc~~Al~iD 317 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRL----GRLREAISDCNEALKID 317 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhccc----CCchhhhhhhhhhhhcC
Confidence 2223337788999999999999999866443 24444444 45688999999999983
No 165
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=54.12 E-value=23 Score=29.90 Aligned_cols=35 Identities=20% Similarity=0.181 Sum_probs=29.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhc
Q 000306 64 ALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQG 101 (1691)
Q Consensus 64 al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG 101 (1691)
|..+.+.|++++|.+..++.++.+|++ +.+++.-|
T Consensus 8 a~~~~~~G~~~~A~~~~~~~l~~~P~~---~~a~~~La 42 (44)
T PF13428_consen 8 ARAYRRLGQPDEAERLLRRALALDPDD---PEAWRALA 42 (44)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCC---HHHHHHhh
Confidence 566788999999999999999999999 66655544
No 166
>PLN02789 farnesyltranstransferase
Probab=54.11 E-value=73 Score=39.04 Aligned_cols=97 Identities=11% Similarity=0.123 Sum_probs=55.9
Q ss_pred HcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhcc------------CChhHH--H------------HHHH
Q 000306 69 RRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASII------------DDLNSK--Q------------RHLK 122 (1691)
Q Consensus 69 ~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~------------~~~~~k--~------------~~L~ 122 (1691)
..+.+.+||....+.+..+|.. .-+.+..|.+..++.... .++..- . ....
T Consensus 49 ~~e~serAL~lt~~aI~lnP~~---ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPGN---YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCchh---HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence 3567888888888888888887 666666676666542100 000000 0 0112
Q ss_pred HHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000306 123 NAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1691)
Q Consensus 123 ~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I 172 (1691)
.+++++.+|..+.|+....=..++-++..+ +.|+++..-|.++|.+
T Consensus 126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l----~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 126 KELEFTRKILSLDAKNYHAWSHRQWVLRTL----GGWEDELEYCHQLLEE 171 (320)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHH
Confidence 345555566666666555555555555555 3577777777777765
No 167
>PLN02789 farnesyltranstransferase
Probab=52.97 E-value=72 Score=39.08 Aligned_cols=97 Identities=14% Similarity=0.172 Sum_probs=51.4
Q ss_pred HHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhH----------HHhhccCChhHHHHHHHHHHHHHHHHhhhCCC
Q 000306 68 LRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCV----------KVASIIDDLNSKQRHLKNAIESAKKAAELSPH 137 (1691)
Q Consensus 68 ~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~----------~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~ 137 (1691)
...+++.+|+.....+....+.| ..++.+-+.+-. ..+..+... ...+..+++++.++....|+
T Consensus 31 ~y~~~~~~a~~~~ra~l~~~e~s---erAL~lt~~aI~lnP~~ytaW~~R~~iL~~L---~~~l~eeL~~~~~~i~~npk 104 (320)
T PLN02789 31 AYTPEFREAMDYFRAVYASDERS---PRALDLTADVIRLNPGNYTVWHFRRLCLEAL---DADLEEELDFAEDVAEDNPK 104 (320)
T ss_pred eeCHHHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHCchhHHHHHHHHHHHHHc---chhHHHHHHHHHHHHHHCCc
Confidence 34456667777777766666666 333333222111 000000000 11356677788888888888
Q ss_pred hHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000306 138 SVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1691)
Q Consensus 138 sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I 172 (1691)
+..+=+.++-++..++.. .|+++..-+.++|.+
T Consensus 105 nyqaW~~R~~~l~~l~~~--~~~~el~~~~kal~~ 137 (320)
T PLN02789 105 NYQIWHHRRWLAEKLGPD--AANKELEFTRKILSL 137 (320)
T ss_pred chHHhHHHHHHHHHcCch--hhHHHHHHHHHHHHh
Confidence 877766666666555321 234454445566654
No 168
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=52.92 E-value=12 Score=41.69 Aligned_cols=35 Identities=23% Similarity=0.282 Sum_probs=25.8
Q ss_pred EEEeC-CeEEEEEEeCCCCcEEEEeCCcceEeCC-hHHH
Q 000306 1578 VCYYG-QHYHCFAYSHDQERWIMYDDKTVKVVGS-WSDV 1614 (1691)
Q Consensus 1578 VvH~G-GHY~AyVR~~~~~~W~~FNDs~Vt~Vse-we~V 1614 (1691)
|.--| ||-+.+++ ..+.||.|||+.+.+-+. |.+|
T Consensus 133 i~~~g~~Havfa~~--ts~gWy~iDDe~~y~~tPdp~~V 169 (193)
T PF05408_consen 133 IFLKGQEHAVFACV--TSDGWYAIDDEDFYPWTPDPSDV 169 (193)
T ss_dssp EEEESTTEEEEEEE--ETTCEEEEETTEEEE----GGGE
T ss_pred heecCCcceEEEEE--eeCcEEEecCCeeeeCCCChhhe
Confidence 44556 99999998 678899999999998663 4443
No 169
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.06 E-value=55 Score=41.67 Aligned_cols=48 Identities=17% Similarity=0.475 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhccc
Q 000306 122 KNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIE 173 (1691)
Q Consensus 122 ~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~ 173 (1691)
..+.-.|.++.+-||+|.|.=.|+|..|..- ..+++|+.....|+-.+
T Consensus 445 ~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDq----qqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 445 AESMKTFEEAKKKFPNCPEVYNLFAEILTDQ----QQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhhH----HhHHHHHHHHHHHHhhc
Confidence 4566778899999999999999999999776 57888988888888764
No 170
>PF13945 NST1: Salt tolerance down-regulator
Probab=51.67 E-value=12 Score=42.21 Aligned_cols=31 Identities=29% Similarity=0.597 Sum_probs=24.3
Q ss_pred HHHHHHHHHhccCCHHHHcceeEeehHHHHH
Q 000306 329 ERRDFVRSYWNSMSLEMKRELLKVKVCDIKA 359 (1691)
Q Consensus 329 ~r~~~v~~yW~~m~~e~~r~fL~V~i~~L~~ 359 (1691)
.-...++.||-+|+.++||++++|.=+.+..
T Consensus 102 eEre~LkeFW~SL~eeERr~LVkIEKe~VLk 132 (190)
T PF13945_consen 102 EEREKLKEFWESLSEEERRSLVKIEKEAVLK 132 (190)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHhhHHHHHH
Confidence 3345789999999999999998887544443
No 171
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=50.55 E-value=1e+02 Score=34.81 Aligned_cols=60 Identities=18% Similarity=0.183 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCCh
Q 000306 76 ALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHS 138 (1691)
Q Consensus 76 Al~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~s 138 (1691)
|+.-.++-..-+|+- .-++.--|..+..+|..+.+......|...|.+||.+|..+.|+.
T Consensus 54 AisK~eeAL~I~P~~---hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 54 AISKFEEALKINPNK---HDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp HHHHHHHHHHH-TT----HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHhcCCch---HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 444444444455888 888899999999999877777667778899999999999999985
No 172
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=49.99 E-value=55 Score=39.82 Aligned_cols=86 Identities=17% Similarity=0.214 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHh--hccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHH
Q 000306 71 GNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVA--SIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANL 148 (1691)
Q Consensus 71 G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a--~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~ 148 (1691)
.+..||+..|.+|..--|.- -.+... +.+-++| ...++. +.+|++.+.+|..-.|+|+.-...++++
T Consensus 155 reW~KAId~A~~L~k~~~q~---~~~eIA--qfyCELAq~~~~~~~------~d~A~~~l~kAlqa~~~cvRAsi~lG~v 223 (389)
T COG2956 155 REWEKAIDVAERLVKLGGQT---YRVEIA--QFYCELAQQALASSD------VDRARELLKKALQADKKCVRASIILGRV 223 (389)
T ss_pred hHHHHHHHHHHHHHHcCCcc---chhHHH--HHHHHHHHHHhhhhh------HHHHHHHHHHHHhhCccceehhhhhhHH
Confidence 35779999999998433333 222222 2333343 222322 3569999999999999999999999998
Q ss_pred HHHHhccCccHHHHHHHHHHhhc
Q 000306 149 LYEAANDGKEYEEVVQECERALA 171 (1691)
Q Consensus 149 L~~~~~~~~~Y~ea~~e~~RaL~ 171 (1691)
...- |.|+.|+....+.+.
T Consensus 224 ~~~~----g~y~~AV~~~e~v~e 242 (389)
T COG2956 224 ELAK----GDYQKAVEALERVLE 242 (389)
T ss_pred HHhc----cchHHHHHHHHHHHH
Confidence 8877 689999877766665
No 173
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=49.30 E-value=13 Score=33.18 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=20.6
Q ss_pred EecccchhccCChhHHHHhhhhhhcc
Q 000306 389 WVCCRCNEKFADSESHMHHVVQQHMG 414 (1691)
Q Consensus 389 WiCp~C~~kF~d~~~~~~Hl~~~H~~ 414 (1691)
=.||.|+..+.....|..||+--|..
T Consensus 25 atCP~C~a~~~~srnLrRHle~~H~~ 50 (54)
T PF09237_consen 25 ATCPICGAVIRQSRNLRRHLEIRHFK 50 (54)
T ss_dssp EE-TTT--EESSHHHHHHHHHHHTTT
T ss_pred CCCCcchhhccchhhHHHHHHHHhcc
Confidence 47999999999999999999988864
No 174
>PRK14574 hmsH outer membrane protein; Provisional
Probab=47.44 E-value=1.2e+02 Score=42.03 Aligned_cols=106 Identities=12% Similarity=0.119 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCC
Q 000306 58 KLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPH 137 (1691)
Q Consensus 58 r~e~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~ 137 (1691)
....-.|.-+...|++.+|.+++++|...-|+. +-+...+|.|..... .-+.|+..+++|..|.|+
T Consensus 417 ~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n---~~l~~~~A~v~~~Rg-----------~p~~A~~~~k~a~~l~P~ 482 (822)
T PRK14574 417 EGQTLLVQSLVALNDLPTAQKKLEDLSSTAPAN---QNLRIALASIYLARD-----------LPRKAEQELKAVESLAPR 482 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcC-----------CHHHHHHHHHHHhhhCCc
Confidence 333445666788999999999999999999998 666666666655432 336899999999999999
Q ss_pred hHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCccccc
Q 000306 138 SVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKES 182 (1691)
Q Consensus 138 sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~~P~DPa~~~ 182 (1691)
.+..=...|.....+ ++|.+|.+.. +.|--..|-||...+
T Consensus 483 ~~~~~~~~~~~al~l----~e~~~A~~~~-~~l~~~~Pe~~~~~~ 522 (822)
T PRK14574 483 SLILERAQAETAMAL----QEWHQMELLT-DDVISRSPEDIPSQE 522 (822)
T ss_pred cHHHHHHHHHHHHhh----hhHHHHHHHH-HHHHhhCCCchhHHH
Confidence 887777777777777 6889986444 455556788885444
No 175
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.12 E-value=36 Score=44.15 Aligned_cols=82 Identities=23% Similarity=0.231 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHH
Q 000306 73 HKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEA 152 (1691)
Q Consensus 73 ~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~ 152 (1691)
+++|+.--.+...-.|++ |.+|---|-|+|++. -|.-|+++|.+|..|.||=.+--.-+|.+|=+.
T Consensus 268 ~d~Avs~Y~rAl~lrpn~---A~a~gNla~iYyeqG-----------~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~ 333 (966)
T KOG4626|consen 268 FDRAVSCYLRALNLRPNH---AVAHGNLACIYYEQG-----------LLDLAIDTYKRALELQPNFPDAYNNLANALKDK 333 (966)
T ss_pred chHHHHHHHHHHhcCCcc---hhhccceEEEEeccc-----------cHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhc
Confidence 444444334444444888 888888888888776 245788888888888888887777777777777
Q ss_pred hccCccHHHHHHHHHHhhcc
Q 000306 153 ANDGKEYEEVVQECERALAI 172 (1691)
Q Consensus 153 ~~~~~~Y~ea~~e~~RaL~I 172 (1691)
|...||++=...||..
T Consensus 334 ----G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 334 ----GSVTEAVDCYNKALRL 349 (966)
T ss_pred ----cchHHHHHHHHHHHHh
Confidence 5778888777888876
No 176
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=46.97 E-value=1.4e+02 Score=41.44 Aligned_cols=115 Identities=14% Similarity=0.131 Sum_probs=72.1
Q ss_pred HHHHH-HcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChh---------HHHHHHHHHHHHHHHHhh
Q 000306 64 ALTAL-RRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLN---------SKQRHLKNAIESAKKAAE 133 (1691)
Q Consensus 64 al~~~-~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~---------~k~~~L~~Al~~~~~A~~ 133 (1691)
.+... +.|+.++|++..++....+|++ ..+++..|.+++.... ..+.. .+..+ .+++.+..-..
T Consensus 37 Li~~~~~~~~~deai~i~~~~l~~~P~~---i~~yy~~G~l~~q~~~-~~~~~lv~~l~~~~~~~~~--~~ve~~~~~i~ 110 (906)
T PRK14720 37 LIDAYKSENLTDEAKDICEEHLKEHKKS---ISALYISGILSLSRRP-LNDSNLLNLIDSFSQNLKW--AIVEHICDKIL 110 (906)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCcc---eehHHHHHHHHHhhcc-hhhhhhhhhhhhcccccch--hHHHHHHHHHH
Confidence 34555 6788999999999999999999 8999999998876642 11111 00011 34444444444
Q ss_pred hCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCc-cccccchhhhH
Q 000306 134 LSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDP-AKESLQDESQQ 189 (1691)
Q Consensus 134 L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~~P~DP-a~~~v~~~~~~ 189 (1691)
..|+.-.-...+|..+=.+ +.+++|.+...|+|.+. |-+| +.++++|-...
T Consensus 111 ~~~~~k~Al~~LA~~Ydk~----g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 111 LYGENKLALRTLAEAYAKL----NENKKLKGVWERLVKAD-RDNPEIVKKLATSYEE 162 (906)
T ss_pred hhhhhhHHHHHHHHHHHHc----CChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH
Confidence 4444433222333333233 68999999999999997 6665 45556654433
No 177
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=45.59 E-value=73 Score=37.96 Aligned_cols=64 Identities=13% Similarity=0.058 Sum_probs=53.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChH
Q 000306 65 LTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSV 139 (1691)
Q Consensus 65 l~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl 139 (1691)
.-++..|++.+|+...+.++..||+|..++-+++..|.++.++ .+. ..|...|.+.....|++-
T Consensus 188 ~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~----g~~-------~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 188 QLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDK----GDT-------AKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHc----CCH-------HHHHHHHHHHHHHCcCCH
Confidence 3456789999999999999999999988888888888888755 233 478888999999999986
No 178
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=45.54 E-value=9.1 Score=42.50 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=14.6
Q ss_pred cccccCCCCCCcccchHHHHHHHh
Q 000306 1300 GAGLKNEVGEYNCFLNVIIQSLWH 1323 (1691)
Q Consensus 1300 ~~GL~NlG~~NTCYmNSVLQ~L~h 1323 (1691)
.+|+.|.+ |||++||++|.+-.
T Consensus 33 ft~~PN~~--dnCWlNaL~QL~~~ 54 (193)
T PF05408_consen 33 FTGLPNNH--DNCWLNALLQLFRY 54 (193)
T ss_dssp EE----SS--STHHHHHHHHHHHH
T ss_pred EecCCCCC--CChHHHHHHHHHHH
Confidence 34899999 79999999997643
No 179
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=45.26 E-value=1.7e+02 Score=25.99 Aligned_cols=53 Identities=30% Similarity=0.478 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCc
Q 000306 121 LKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDP 178 (1691)
Q Consensus 121 L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~~P~DP 178 (1691)
+..|+..+.++..+.|+....-..+|..++.. +.|++|..-+.+++.+. |.++
T Consensus 16 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~a~~~~~~~~~~~-~~~~ 68 (100)
T cd00189 16 YDEALEYYEKALELDPDNADAYYNLAAAYYKL----GKYEEALEDYEKALELD-PDNA 68 (100)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCC-Ccch
Confidence 35789999999999999887777888888887 58999999999999873 4444
No 180
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=44.46 E-value=13 Score=33.32 Aligned_cols=42 Identities=19% Similarity=0.350 Sum_probs=29.3
Q ss_pred eehHHHHHHhhhccCchhHHHHHHHHHHHHhcCceeEEecccchhccCChhHHHHhhhhhh
Q 000306 352 VKVCDIKAHSASLKDGLASDVLAEALAFAEENKTWRFWVCCRCNEKFADSESHMHHVVQQH 412 (1691)
Q Consensus 352 V~i~~L~~~~~~~~~~~~~~~l~~al~fak~n~sW~fWiCp~C~~kF~d~~~~~~Hl~~~H 412 (1691)
.+...|..|+...+-.... --+||.|..++.+ .|..||...|
T Consensus 12 ~~~~~L~~H~~~~H~~~~~-----------------~v~CPiC~~~~~~--~l~~Hl~~~H 53 (54)
T PF05605_consen 12 FSESSLVEHCEDEHRSESK-----------------NVVCPICSSRVTD--NLIRHLNSQH 53 (54)
T ss_pred cCHHHHHHHHHhHCcCCCC-----------------CccCCCchhhhhh--HHHHHHHHhc
Confidence 3556788888766532111 1489999988774 8999998777
No 181
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=43.03 E-value=20 Score=39.73 Aligned_cols=28 Identities=29% Similarity=0.579 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhcCceeEEecccchhccCC
Q 000306 370 SDVLAEALAFAEENKTWRFWVCCRCNEKFAD 400 (1691)
Q Consensus 370 ~~~l~~al~fak~n~sW~fWiCp~C~~kF~d 400 (1691)
+..+..+|...+++. .|+||.||-.+.+
T Consensus 119 ~~~~~~~Le~~~~~~---~~vC~vCGy~~~g 146 (166)
T COG1592 119 AEMFRGLLERLEEGK---VWVCPVCGYTHEG 146 (166)
T ss_pred HHHHHHHHHhhhcCC---EEEcCCCCCcccC
Confidence 357899999997777 9999999876554
No 182
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=42.83 E-value=46 Score=31.14 Aligned_cols=71 Identities=15% Similarity=0.224 Sum_probs=39.3
Q ss_pred HHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000306 94 ALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1691)
Q Consensus 94 a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I 172 (1691)
+.++..-|.+++.+. +-+.-..++..|++.......-.|+-+.+-.-+|.++..+ |.|++|+.-..+|+.|
T Consensus 5 a~~~~~la~~~~~~~----~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~----g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELG----RYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRL----GDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHT----THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhh
Confidence 566666777777654 2222233445555542222222222333344445555555 6899999999999876
No 183
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.25 E-value=97 Score=39.62 Aligned_cols=44 Identities=18% Similarity=0.412 Sum_probs=40.3
Q ss_pred HHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000306 125 IESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1691)
Q Consensus 125 l~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I 172 (1691)
-..|.+|.+|.|+.-..-+-+|.++|.+ +.|++|.++...|+++
T Consensus 380 ~~~F~~A~~ldp~n~dvYyHRgQm~flL----~q~e~A~aDF~Kai~L 423 (606)
T KOG0547|consen 380 WKDFNKAEDLDPENPDVYYHRGQMRFLL----QQYEEAIADFQKAISL 423 (606)
T ss_pred HHHHHHHHhcCCCCCchhHhHHHHHHHH----HHHHHHHHHHHHHhhc
Confidence 3467889999999999999999999999 6899999999999997
No 184
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=40.69 E-value=2.8e+02 Score=35.01 Aligned_cols=98 Identities=22% Similarity=0.219 Sum_probs=68.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHcc----Cc---hhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCC
Q 000306 65 LTALRRGNHKKALRLMKELSSRHE----NS---AYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPH 137 (1691)
Q Consensus 65 l~~~~~G~~~kAl~~~~eL~~~h~----~S---~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~ 137 (1691)
=.+|++|++..|..+=+..++--. .+ .-.+....+.-++..++. -.|....+.|+.+-.++.++.|+
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c------~lKl~~~~~Ai~~c~kvLe~~~~ 289 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAAC------YLKLKEYKEAIESCNKVLELDPN 289 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHH------HHhhhhHHHHHHHHHHHHhcCCC
Confidence 367999999999877444332221 11 001222222222222222 34555557999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000306 138 SVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1691)
Q Consensus 138 sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I 172 (1691)
.+.--..+++++..+ ++|+.|..-..+|+.+
T Consensus 290 N~KALyRrG~A~l~~----~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 290 NVKALYRRGQALLAL----GEYDLARDDFQKALKL 320 (397)
T ss_pred chhHHHHHHHHHHhh----ccHHHHHHHHHHHHHh
Confidence 999999999999999 5899999999999997
No 185
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=40.66 E-value=2.1e+02 Score=32.48 Aligned_cols=94 Identities=15% Similarity=0.132 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhc
Q 000306 75 KALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAAN 154 (1691)
Q Consensus 75 kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~ 154 (1691)
.|.+.++.-..+.|.+ +-.++-=|....++|.--..++.| .-+..|+.=|.+|..|.|+--+..-.++.++..+|.
T Consensus 9 ~ark~aea~y~~nP~D---adnL~~WG~ALLELAqfk~g~es~-~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 9 HARKKAEAAYAKNPLD---ADNLTNWGGALLELAQFKQGPESK-KMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHH-TT----HHHHHHHHHHHHHHHHHS-HHHHH-HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHh---HHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 6888888888899999 788888899999988543334444 466899999999999999999888888888888876
Q ss_pred cC-------ccHHHHHHHHHHhhcc
Q 000306 155 DG-------KEYEEVVQECERALAI 172 (1691)
Q Consensus 155 ~~-------~~Y~ea~~e~~RaL~I 172 (1691)
.. ..|++|..-..+|..+
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~ 109 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDE 109 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhc
Confidence 42 2688888778888775
No 186
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=38.98 E-value=1.5e+02 Score=35.00 Aligned_cols=102 Identities=27% Similarity=0.459 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHh--hcccCCCCccccccchhh--hHh--
Q 000306 117 KQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERA--LAIENPIDPAKESLQDES--QQK-- 190 (1691)
Q Consensus 117 k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~Ra--L~I~~P~DPa~~~v~~~~--~~~-- 190 (1691)
|..|+.-+.+--++|..|.||+|.--.|+...+.+. +.|.+|.....|| |+-..|.-|++. ++-.+ +..
T Consensus 56 k~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s----~~~~eaI~~Lqra~sl~r~~~~~~~~d-i~~~L~~ak~~~ 130 (284)
T KOG4642|consen 56 KLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQS----KGYDEAIKVLQRAYSLLREQPFTFGDD-IPKALRDAKKKR 130 (284)
T ss_pred HhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhh----ccccHHHHHHHHHHHHHhcCCCCCcch-HHHHHHHHHhCc
Confidence 345666677777899999999998888888888887 7899999999999 544566555544 32111 111
Q ss_pred -hhchHHHHH---HHHHHHHHHHHhhhhhhhhHhhhc
Q 000306 191 -ILTADARIA---HVQSELRSLIQKSNIASISTWMKN 223 (1691)
Q Consensus 191 -~~~~~~rv~---~~~~el~~li~~a~~~~~~~~~k~ 223 (1691)
....+.||- .++..+.++|+.-....++.|..|
T Consensus 131 w~v~e~~Ri~Q~~El~~yl~slie~~~~~~~s~~~~N 167 (284)
T KOG4642|consen 131 WEVSEEKRIRQELELHSYLESLIEGDRERELSEWQEN 167 (284)
T ss_pred cchhHHHHHHHHhhHHHHHHHHhccchhhHHHHHHHc
Confidence 112334432 356677788877655556678888
No 187
>PHA00733 hypothetical protein
Probab=38.24 E-value=19 Score=38.28 Aligned_cols=25 Identities=32% Similarity=0.729 Sum_probs=23.3
Q ss_pred EecccchhccCChhHHHHhhhhhhc
Q 000306 389 WVCCRCNEKFADSESHMHHVVQQHM 413 (1691)
Q Consensus 389 WiCp~C~~kF~d~~~~~~Hl~~~H~ 413 (1691)
..|+.|++.|.....|..|++.+|.
T Consensus 100 ~~C~~CgK~F~~~~sL~~H~~~~h~ 124 (128)
T PHA00733 100 KVCPVCGKEFRNTDSTLDHVCKKHN 124 (128)
T ss_pred ccCCCCCCccCCHHHHHHHHHHhcC
Confidence 4899999999999999999999995
No 188
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.74 E-value=3e+02 Score=36.39 Aligned_cols=77 Identities=25% Similarity=0.288 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHh---ccCccHHHHHHHHHHhhcccCCCCc-cccccchhhhH--hhhch
Q 000306 121 LKNAIESAKKAAELSPHSVEFAHFYANLLYEAA---NDGKEYEEVVQECERALAIENPIDP-AKESLQDESQQ--KILTA 194 (1691)
Q Consensus 121 L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~---~~~~~Y~ea~~e~~RaL~I~~P~DP-a~~~v~~~~~~--~~~~~ 194 (1691)
..+|+.||.+|....|- +|.+...+| ++.|-..+|..-.+.||.+- |.=| |--|+....+. +-+-.
T Consensus 438 v~~A~q~y~rAI~~nPt-------~AeAhsNLasi~kDsGni~~AI~sY~~aLklk-PDfpdA~cNllh~lq~vcdw~D~ 509 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPT-------FAEAHSNLASIYKDSGNIPEAIQSYRTALKLK-PDFPDAYCNLLHCLQIVCDWTDY 509 (966)
T ss_pred HHHHHHHHHHHHhcCcH-------HHHHHhhHHHHhhccCCcHHHHHHHHHHHccC-CCCchhhhHHHHHHHHHhcccch
Confidence 35899999999999863 333333333 45677889999999999983 3333 33333333332 33444
Q ss_pred HHHHHHHHHHH
Q 000306 195 DARIAHVQSEL 205 (1691)
Q Consensus 195 ~~rv~~~~~el 205 (1691)
+.|+.++-+..
T Consensus 510 d~~~~kl~siv 520 (966)
T KOG4626|consen 510 DKRMKKLVSIV 520 (966)
T ss_pred HHHHHHHHHHH
Confidence 55555544433
No 189
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.15 E-value=1.9e+02 Score=34.92 Aligned_cols=84 Identities=18% Similarity=0.243 Sum_probs=68.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHH
Q 000306 65 LTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHF 144 (1691)
Q Consensus 65 l~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~ 144 (1691)
-+++++.++..|++.+.---.+.|.+ --.+.+-|+.+|..- .| -.|.+||.+--.|+|.--.+-..
T Consensus 18 y~lI~d~ry~DaI~~l~s~~Er~p~~---rAgLSlLgyCYY~~Q----------~f-~~AA~CYeQL~ql~P~~~qYrlY 83 (459)
T KOG4340|consen 18 YRLIRDARYADAIQLLGSELERSPRS---RAGLSLLGYCYYRLQ----------EF-ALAAECYEQLGQLHPELEQYRLY 83 (459)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCccc---hHHHHHHHHHHHHHH----------HH-HHHHHHHHHHHhhChHHHHHHHH
Confidence 56788888999999988888888877 566788899988652 23 46789999999999999999999
Q ss_pred HHHHHHHHhccCccHHHHHHHH
Q 000306 145 YANLLYEAANDGKEYEEVVQEC 166 (1691)
Q Consensus 145 ~A~~L~~~~~~~~~Y~ea~~e~ 166 (1691)
+|.+||.+ +.|-+|.+-.
T Consensus 84 ~AQSLY~A----~i~ADALrV~ 101 (459)
T KOG4340|consen 84 QAQSLYKA----CIYADALRVA 101 (459)
T ss_pred HHHHHHHh----cccHHHHHHH
Confidence 99999999 4666666543
No 190
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=35.93 E-value=1.6e+02 Score=35.55 Aligned_cols=99 Identities=18% Similarity=0.181 Sum_probs=59.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHH
Q 000306 63 RALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFA 142 (1691)
Q Consensus 63 ~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia 142 (1691)
.|.-+++-|+.+-|-+..+.+..-...+ .+.+..++.|.+..+. +.. ..|.-.|.+-...+|.++.+.
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~eD~---~l~qLa~awv~l~~g~--e~~-------~~A~y~f~El~~~~~~t~~~l 204 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQIDEDS---ILTQLAEAWVNLATGG--EKY-------QDAFYIFEELSDKFGSTPKLL 204 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCSCCH---HHHHHHHHHHHHHHTT--TCC-------CHHHHHHHHHHCCS--SHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcH---HHHHHHHHHHHHHhCc--hhH-------HHHHHHHHHHHhccCCCHHHH
Confidence 3344455555555555555544333333 4555555554444332 222 356778888888889999998
Q ss_pred HHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCc
Q 000306 143 HFYANLLYEAANDGKEYEEVVQECERALAIENPIDP 178 (1691)
Q Consensus 143 ~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~~P~DP 178 (1691)
...|...+.+ +.|++|+.-...||.. +|.||
T Consensus 205 ng~A~~~l~~----~~~~eAe~~L~~al~~-~~~~~ 235 (290)
T PF04733_consen 205 NGLAVCHLQL----GHYEEAEELLEEALEK-DPNDP 235 (290)
T ss_dssp HHHHHHHHHC----T-HHHHHHHHHHHCCC--CCHH
T ss_pred HHHHHHHHHh----CCHHHHHHHHHHHHHh-ccCCH
Confidence 8888888888 6899999999999874 34443
No 191
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=35.68 E-value=1.4e+02 Score=39.01 Aligned_cols=87 Identities=20% Similarity=0.124 Sum_probs=74.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHH
Q 000306 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEF 141 (1691)
Q Consensus 62 ~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~i 141 (1691)
=-|.-..+.|++.+||+-+++-+..-|.. .-++.+-|.|+-++.. +..|.+++..|..|.+..=-|
T Consensus 199 ~lAqhyd~~g~~~~Al~~Id~aI~htPt~---~ely~~KarilKh~G~-----------~~~Aa~~~~~Ar~LD~~DRyi 264 (517)
T PF12569_consen 199 FLAQHYDYLGDYEKALEYIDKAIEHTPTL---VELYMTKARILKHAGD-----------LKEAAEAMDEARELDLADRYI 264 (517)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHhCChhhHHH
Confidence 34566778999999999999999666888 8899999999988762 368999999999999999889
Q ss_pred HHHHHHHHHHHhccCccHHHHHHHH
Q 000306 142 AHFYANLLYEAANDGKEYEEVVQEC 166 (1691)
Q Consensus 142 a~~~A~~L~~~~~~~~~Y~ea~~e~ 166 (1691)
..-+|.-++.. +.+++|+.-+
T Consensus 265 NsK~aKy~LRa----~~~e~A~~~~ 285 (517)
T PF12569_consen 265 NSKCAKYLLRA----GRIEEAEKTA 285 (517)
T ss_pred HHHHHHHHHHC----CCHHHHHHHH
Confidence 99999999988 5788887665
No 192
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.40 E-value=2.4e+02 Score=33.70 Aligned_cols=107 Identities=18% Similarity=0.233 Sum_probs=73.2
Q ss_pred HHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhh-----------ccCChhHHHHHH------------HH
Q 000306 67 ALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS-----------IIDDLNSKQRHL------------KN 123 (1691)
Q Consensus 67 ~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~-----------~~~~~~~k~~~L------------~~ 123 (1691)
+.-.|+.+-|..-.+.|-.+.|+| .+|-.+-|..+-+.+. .-+||..-..|- ..
T Consensus 62 Ald~~~~~lAq~C~~~L~~~fp~S---~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~ 138 (289)
T KOG3060|consen 62 ALDTGRDDLAQKCINQLRDRFPGS---KRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLE 138 (289)
T ss_pred HHHhcchHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHH
Confidence 334466667777778888888888 6666666555443321 122222211111 13
Q ss_pred HHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCcccc
Q 000306 124 AIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1691)
Q Consensus 124 Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~~P~DPa~~ 181 (1691)
|+..+..=...||+..+-=+-+|.+++.. ++|++|. -|..-+=..+|..|.-+
T Consensus 139 aIk~ln~YL~~F~~D~EAW~eLaeiY~~~----~~f~kA~-fClEE~ll~~P~n~l~f 191 (289)
T KOG3060|consen 139 AIKELNEYLDKFMNDQEAWHELAEIYLSE----GDFEKAA-FCLEELLLIQPFNPLYF 191 (289)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhH----hHHHHHH-HHHHHHHHcCCCcHHHH
Confidence 55556666788999999999999999999 6899994 78888888899999877
No 193
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=35.37 E-value=13 Score=36.46 Aligned_cols=26 Identities=23% Similarity=0.620 Sum_probs=0.0
Q ss_pred cccchhccCChhHHHHhhhhhhccCc
Q 000306 391 CCRCNEKFADSESHMHHVVQQHMGNL 416 (1691)
Q Consensus 391 Cp~C~~kF~d~~~~~~Hl~~~H~~~~ 416 (1691)
|..|+..|.+...++.||...|.-.+
T Consensus 2 C~~C~~~f~~~~~l~~H~~~~H~~~~ 27 (100)
T PF12756_consen 2 CLFCDESFSSVDDLLQHMKKKHGFDI 27 (100)
T ss_dssp --------------------------
T ss_pred cccccccccccccccccccccccccc
Confidence 89999999999999999999997554
No 194
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=35.01 E-value=26 Score=28.01 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=19.9
Q ss_pred EecccchhccCChhHHHHhhhhh
Q 000306 389 WVCCRCNEKFADSESHMHHVVQQ 411 (1691)
Q Consensus 389 WiCp~C~~kF~d~~~~~~Hl~~~ 411 (1691)
|.|..|.+.|.+...+..|+..+
T Consensus 4 ~~C~~C~~~~~~~~~~~~H~~gk 26 (35)
T smart00451 4 FYCKLCNVTFTDEISVEAHLKGK 26 (35)
T ss_pred eEccccCCccCCHHHHHHHHChH
Confidence 34999999999999999999654
No 195
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=34.64 E-value=1.4e+02 Score=37.47 Aligned_cols=87 Identities=11% Similarity=0.153 Sum_probs=61.2
Q ss_pred HHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHH
Q 000306 67 ALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYA 146 (1691)
Q Consensus 67 ~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A 146 (1691)
++.+-++..||-.+++-+.-.|++ --++.+-|.+..++.+. ..|+=+|+.|.+|+|--+++-..+-
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~~r~---~~alilKG~lL~~~~R~-----------~~A~IaFR~Aq~Lap~rL~~Y~GL~ 375 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSEPRN---HEALILKGRLLIALERH-----------TQAVIAFRTAQMLAPYRLEIYRGLF 375 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccCccc---chHHHhccHHHHhccch-----------HHHHHHHHHHHhcchhhHHHHHHHH
Confidence 445555666666666666666666 45556666666555332 4688889999999999999998888
Q ss_pred HHHHHHhccCccHHHHHHHHHHhhc
Q 000306 147 NLLYEAANDGKEYEEVVQECERALA 171 (1691)
Q Consensus 147 ~~L~~~~~~~~~Y~ea~~e~~RaL~ 171 (1691)
+.++.. +..+||..-+..++.
T Consensus 376 hsYLA~----~~~kEA~~~An~~~~ 396 (564)
T KOG1174|consen 376 HSYLAQ----KRFKEANALANWTIR 396 (564)
T ss_pred HHHHhh----chHHHHHHHHHHHHH
Confidence 888877 578888876665554
No 196
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=34.54 E-value=2.1e+02 Score=28.49 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000306 123 NAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1691)
Q Consensus 123 ~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I 172 (1691)
..+..+.++....|+.++....+|..++.. |.|++|....-..+..
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~----g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAA----GDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHT----T-HHHHHHHHHHHHCC
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHh
Confidence 356778888999999999999999999888 6899999988777765
No 197
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=31.89 E-value=3.8e+02 Score=35.16 Aligned_cols=142 Identities=18% Similarity=0.118 Sum_probs=78.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHc----c-CchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChH
Q 000306 65 LTALRRGNHKKALRLMKELSSRH----E-NSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSV 139 (1691)
Q Consensus 65 l~~~~~G~~~kAl~~~~eL~~~h----~-~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl 139 (1691)
.-+..-|++.+|..+-++..+.. | .+..||.+|+--|..++...+ -+--..|+..|++.+.+ .+..+.-
T Consensus 249 ~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GK----f~EA~~~~e~Al~I~~~--~~~~~~~ 322 (508)
T KOG1840|consen 249 LVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGK----FAEAEEYCERALEIYEK--LLGASHP 322 (508)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCC----hHHHHHHHHHHHHHHHH--hhccChH
Confidence 33445567777766666533222 1 122335555554555544432 11124588999999999 5555555
Q ss_pred HHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccC-CCCccccccc--hhhhHhhhchHHHHHHHHHHHHHHHHhhh
Q 000306 140 EFAHFYANLLYEAANDGKEYEEVVQECERALAIEN-PIDPAKESLQ--DESQQKILTADARIAHVQSELRSLIQKSN 213 (1691)
Q Consensus 140 ~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~~-P~DPa~~~v~--~~~~~~~~~~~~rv~~~~~el~~li~~a~ 213 (1691)
+++..+-.+-..+-. .+.|++|..-.++||.|-. -..++.-+++ +..-.+..-...|...+.+=++.+|++.+
T Consensus 323 ~v~~~l~~~~~~~~~-~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~ 398 (508)
T KOG1840|consen 323 EVAAQLSELAAILQS-MNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILR 398 (508)
T ss_pred HHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 655555444333322 3589999999999999954 2222221232 11212344455666666666666666654
No 198
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=31.42 E-value=2e+02 Score=39.93 Aligned_cols=101 Identities=26% Similarity=0.250 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCC
Q 000306 58 KLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPH 137 (1691)
Q Consensus 58 r~e~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~ 137 (1691)
+..--.|.+.+++.++.+||+.-|+.....|+. ..+|..-|-....+.. + +..|-+.|-.|+.|.||
T Consensus 3 K~aLK~Ak~al~nk~YeealEqskkvLk~dpdN---YnA~vFLGvAl~sl~q---~-------le~A~ehYv~AaKldpd 69 (1238)
T KOG1127|consen 3 KTALKSAKDALRNKEYEEALEQSKKVLKEDPDN---YNAQVFLGVALWSLGQ---D-------LEKAAEHYVLAAKLDPD 69 (1238)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHhcCCCc---chhhhHHHHHHHhccC---C-------HHHHHHHHHHHHhcChh
Confidence 344456777889999999999999999888988 6777777755544321 2 45788899999999999
Q ss_pred hHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000306 138 SVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1691)
Q Consensus 138 sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I 172 (1691)
.+--.-.++. ||+.-++.-.|.++-.-|.|++-|
T Consensus 70 nlLAWkGL~n-Lye~~~dIl~ld~~~~~yq~~~l~ 103 (1238)
T KOG1127|consen 70 NLLAWKGLGN-LYERYNDILDLDRAAKCYQRAVLI 103 (1238)
T ss_pred hhHHHHHHHH-HHHccchhhhhhHhHHHHHHHHHh
Confidence 9976666664 344444445788888778888776
No 199
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=30.36 E-value=74 Score=24.87 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=25.4
Q ss_pred HHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCCh
Q 000306 94 ALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHS 138 (1691)
Q Consensus 94 a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~s 138 (1691)
|.++...|.+++.+. -...|+.+|.+|..+.|+.
T Consensus 1 a~~~~~~g~~~~~~~-----------~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLG-----------DYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhC-----------CchHHHHHHHHHHHHCcCC
Confidence 345667777777664 2368999999999999973
No 200
>PF12907 zf-met2: Zinc-binding
Probab=29.74 E-value=15 Score=31.29 Aligned_cols=26 Identities=23% Similarity=0.512 Sum_probs=21.3
Q ss_pred ecccchhccCC---hhHHHHhhhhhhccC
Q 000306 390 VCCRCNEKFAD---SESHMHHVVQQHMGN 415 (1691)
Q Consensus 390 iCp~C~~kF~d---~~~~~~Hl~~~H~~~ 415 (1691)
+|.+|-+.|.- ...|..|.+++|...
T Consensus 3 ~C~iC~qtF~~t~~~~~L~eH~enKHpK~ 31 (40)
T PF12907_consen 3 ICKICRQTFMQTTNEPQLKEHAENKHPKN 31 (40)
T ss_pred CcHHhhHHHHhcCCHHHHHHHHHccCCCC
Confidence 79999977744 466999999999864
No 201
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=29.64 E-value=50 Score=40.17 Aligned_cols=61 Identities=21% Similarity=0.358 Sum_probs=49.1
Q ss_pred HHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000306 97 HRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1691)
Q Consensus 97 h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I 172 (1691)
.--+|.-|+++. -..-|++||+++..+.|...++-+-+|.+++.+ +.+--|+..|..|++.
T Consensus 100 iKE~GN~yFKQg-----------Ky~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~----K~FA~AE~DC~~AiaL 160 (536)
T KOG4648|consen 100 IKERGNTYFKQG-----------KYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQ----KSFAQAEEDCEAAIAL 160 (536)
T ss_pred HHHhhhhhhhcc-----------chhHHHHHhhhhhccCCCCccchhhHHHHHHHH----HHHHHHHHhHHHHHHh
Confidence 345666676654 236899999999999998888888889999988 6777888889999885
No 202
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=28.93 E-value=2.4e+02 Score=34.15 Aligned_cols=110 Identities=15% Similarity=0.158 Sum_probs=69.1
Q ss_pred hhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhh
Q 000306 55 GAIKLECERALTALRRG-NHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAE 133 (1691)
Q Consensus 55 ~~ir~e~~~al~~~~~G-~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~ 133 (1691)
+.|-.=|+.-+.+..-| +..+|.-+-+||+.++|.+ +.+++.++..+..+. ++..|...+.+|..
T Consensus 164 ~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t---~~~lng~A~~~l~~~-----------~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 164 SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGST---PKLLNGLAVCHLQLG-----------HYEEAEELLEEALE 229 (290)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--S---HHHHHHHHHHHHHCT------------HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHH
Confidence 45555555555555544 3889999999999999888 888888887777664 44678888999999
Q ss_pred hCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCccccc
Q 000306 134 LSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKES 182 (1691)
Q Consensus 134 L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~~P~DPa~~~ 182 (1691)
..|+..+.-+-.+.+-..+ |.-.++..+..--|.-.+|..|...+
T Consensus 230 ~~~~~~d~LaNliv~~~~~----gk~~~~~~~~l~qL~~~~p~h~~~~~ 274 (290)
T PF04733_consen 230 KDPNDPDTLANLIVCSLHL----GKPTEAAERYLSQLKQSNPNHPLVKD 274 (290)
T ss_dssp C-CCHHHHHHHHHHHHHHT----T-TCHHHHHHHHHCHHHTTTSHHHHH
T ss_pred hccCCHHHHHHHHHHHHHh----CCChhHHHHHHHHHHHhCCCChHHHH
Confidence 9999877544444333333 32223444554555555666555443
No 203
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=28.34 E-value=5.9e+02 Score=31.53 Aligned_cols=98 Identities=18% Similarity=0.227 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCC
Q 000306 57 IKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSP 136 (1691)
Q Consensus 57 ir~e~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P 136 (1691)
--=.||=|.....+.++++|+...++-....|++ .++-..-|.|+.... +...||+.+.+..+-.|
T Consensus 180 AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c---vRAsi~lG~v~~~~g-----------~y~~AV~~~e~v~eQn~ 245 (389)
T COG2956 180 AQFYCELAQQALASSDVDRARELLKKALQADKKC---VRASIILGRVELAKG-----------DYQKAVEALERVLEQNP 245 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc---eehhhhhhHHHHhcc-----------chHHHHHHHHHHHHhCh
Confidence 3447888889999999999999999999999999 888899999988664 23688999999999888
Q ss_pred ChH-HHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000306 137 HSV-EFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1691)
Q Consensus 137 ~sl-~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I 172 (1691)
+=+ ++.-.+...+-.+ |.-++...-..|+...
T Consensus 246 ~yl~evl~~L~~~Y~~l----g~~~~~~~fL~~~~~~ 278 (389)
T COG2956 246 EYLSEVLEMLYECYAQL----GKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHc
Confidence 766 4544444444455 4445555555555554
No 204
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=28.30 E-value=26 Score=38.00 Aligned_cols=11 Identities=36% Similarity=1.292 Sum_probs=10.5
Q ss_pred EEecccchhcc
Q 000306 388 FWVCCRCNEKF 398 (1691)
Q Consensus 388 fWiCp~C~~kF 398 (1691)
||.||.|++.|
T Consensus 124 f~~C~~C~kiy 134 (147)
T PF01927_consen 124 FWRCPGCGKIY 134 (147)
T ss_pred EEECCCCCCEe
Confidence 99999999988
No 205
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=28.09 E-value=74 Score=37.32 Aligned_cols=51 Identities=24% Similarity=0.397 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000306 118 QRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1691)
Q Consensus 118 ~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I 172 (1691)
-+++..|++||++|.-+.|+-+.+..=.|.-.+.+ +.++.+..-|+|||.+
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~----~~~~~v~~dcrralql 73 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKL----KHWEPVEEDCRRALQL 73 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHh----hhhhhhhhhHHHHHhc
Confidence 34668899999999999999999999888888887 6899999999999997
No 206
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=27.20 E-value=18 Score=32.19 Aligned_cols=12 Identities=33% Similarity=0.753 Sum_probs=4.6
Q ss_pred ceeEEecccchh
Q 000306 385 TWRFWVCCRCNE 396 (1691)
Q Consensus 385 sW~fWiCp~C~~ 396 (1691)
....|.||.|++
T Consensus 38 ~~~~W~CPiC~~ 49 (50)
T PF02891_consen 38 RTPKWKCPICNK 49 (50)
T ss_dssp HS---B-TTT--
T ss_pred ccCCeECcCCcC
Confidence 334499999975
No 207
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=26.91 E-value=3e+02 Score=29.00 Aligned_cols=51 Identities=16% Similarity=0.091 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHH
Q 000306 57 IKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKV 107 (1691)
Q Consensus 57 ir~e~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~ 107 (1691)
.+.-+.-+-.+-.-|++++|+...++....||+......+....+...+.+
T Consensus 38 ~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 38 RRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 344445556677889999999999999999998421144444444444444
No 208
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=26.84 E-value=2.8e+02 Score=35.20 Aligned_cols=82 Identities=21% Similarity=0.332 Sum_probs=61.1
Q ss_pred cCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHH
Q 000306 70 RGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLL 149 (1691)
Q Consensus 70 ~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L 149 (1691)
.|+...|+...++|..++|.- +.+ -+.++.. .+.+ ..|+..+.+|....|++.++-..-|+.|
T Consensus 182 t~~~~~ai~lle~L~~~~pev---~~~---LA~v~l~-----~~~E------~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPEV---AVL---LARVYLL-----MNEE------VEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred cccHHHHHHHHHHHHhcCCcH---HHH---HHHHHHh-----cCcH------HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 356899999999999999864 211 1222221 1222 3678888888899999988888888888
Q ss_pred HHHhccCccHHHHHHHHHHhhcc
Q 000306 150 YEAANDGKEYEEVVQECERALAI 172 (1691)
Q Consensus 150 ~~~~~~~~~Y~ea~~e~~RaL~I 172 (1691)
+.- +.|+.|..-+++|..+
T Consensus 245 l~k----~~~~lAL~iAk~av~l 263 (395)
T PF09295_consen 245 LSK----KKYELALEIAKKAVEL 263 (395)
T ss_pred Hhc----CCHHHHHHHHHHHHHh
Confidence 777 6899999999999987
No 209
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=26.62 E-value=2.7e+02 Score=36.24 Aligned_cols=83 Identities=22% Similarity=0.192 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhh
Q 000306 55 GAIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAEL 134 (1691)
Q Consensus 55 ~~ir~e~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L 134 (1691)
..-+.-|.+|+-+.+-|+...||+=++.-+.-+|+= .-+..-+|.+++.+ ..| ..|+++|.+|..+
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~---~kgy~RKg~al~~m----------k~y-dkAleay~eale~ 455 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNF---IKAYLRKGAALRAM----------KEY-DKALEAYQEALEL 455 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchH---HHHHHHHHHHHHHH----------HHH-HHHHHHHHHHHhc
Confidence 345678899999999999999999999999999876 55566667666654 223 5789999999999
Q ss_pred CCChHHHHHHHHHHHHH
Q 000306 135 SPHSVEFAHFYANLLYE 151 (1691)
Q Consensus 135 ~P~sl~ia~~~A~~L~~ 151 (1691)
.|++-++.-.+-+.+-.
T Consensus 456 dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 456 DPSNAEAIDGYRRCVEA 472 (539)
T ss_pred CchhHHHHHHHHHHHHH
Confidence 99998877666554443
No 210
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=26.16 E-value=2.4e+02 Score=37.49 Aligned_cols=96 Identities=14% Similarity=0.195 Sum_probs=61.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHH
Q 000306 66 TALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFY 145 (1691)
Q Consensus 66 ~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~ 145 (1691)
-+++.|..++||..+++.+--.|.+ ++.-+-.|.|.+.+.+ | .-|+..+-+-+.++|+-....+++
T Consensus 532 ~~~~~k~~d~AL~~~~~A~~ld~kn---~l~~~~~~~il~~~~~----------~-~eal~~LEeLk~~vP~es~v~~ll 597 (638)
T KOG1126|consen 532 IQHQLKRKDKALQLYEKAIHLDPKN---PLCKYHRASILFSLGR----------Y-VEALQELEELKELVPQESSVFALL 597 (638)
T ss_pred HHHHhhhhhHHHHHHHHHHhcCCCC---chhHHHHHHHHHhhcc----------h-HHHHHHHHHHHHhCcchHHHHHHH
Confidence 4556666777776666666555666 5555556666665532 1 457777777777777777777777
Q ss_pred HHHHHHHhccCccHHHHHHHHHHhhcccCCCCcccccc
Q 000306 146 ANLLYEAANDGKEYEEVVQECERALAIENPIDPAKESL 183 (1691)
Q Consensus 146 A~~L~~~~~~~~~Y~ea~~e~~RaL~I~~P~DPa~~~v 183 (1691)
++..-.+ +.+..|..+.--|+- .||-..++
T Consensus 598 gki~k~~----~~~~~Al~~f~~A~~----ldpkg~~i 627 (638)
T KOG1126|consen 598 GKIYKRL----GNTDLALLHFSWALD----LDPKGAQI 627 (638)
T ss_pred HHHHHHH----ccchHHHHhhHHHhc----CCCccchh
Confidence 7777777 355677766655544 45555543
No 211
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=25.81 E-value=3.5e+02 Score=35.48 Aligned_cols=92 Identities=21% Similarity=0.236 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCC
Q 000306 58 KLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPH 137 (1691)
Q Consensus 58 r~e~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~ 137 (1691)
.+|=.+|+..|+ +||.++++.-.. +.+=......-||++.++- -...|+.+|++|.+|.|.
T Consensus 427 ~~~y~~A~~~f~-----~~l~~ik~~~~e---~~~w~p~~~NLGH~~Rkl~-----------~~~eAI~~~q~aL~l~~k 487 (611)
T KOG1173|consen 427 YEEYPEALKYFQ-----KALEVIKSVLNE---KIFWEPTLNNLGHAYRKLN-----------KYEEAIDYYQKALLLSPK 487 (611)
T ss_pred HhhhHHHHHHHH-----HHHHHhhhcccc---ccchhHHHHhHHHHHHHHh-----------hHHHHHHHHHHHHHcCCC
Confidence 556666777776 677666665522 2211233445588777553 347899999999999999
Q ss_pred hHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000306 138 SVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1691)
Q Consensus 138 sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I 172 (1691)
+..+=+..|-....++ -.+.|......||+|
T Consensus 488 ~~~~~asig~iy~llg----nld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 488 DASTHASIGYIYHLLG----NLDKAIDHFHKALAL 518 (611)
T ss_pred chhHHHHHHHHHHHhc----ChHHHHHHHHHHHhc
Confidence 9999888888888884 568999999999998
No 212
>KOG4326 consensus Mitochondrial F1F0-ATP synthase, subunit e [Energy production and conversion]
Probab=25.52 E-value=54 Score=31.08 Aligned_cols=54 Identities=31% Similarity=0.223 Sum_probs=34.6
Q ss_pred HhhhcCcccccccchhhhHhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhhh
Q 000306 895 LELKLEPVSAYDYQSILLPLVQSYLRAHLEDLAEKDATEKSDAAREAFLAELALDSKKV 953 (1691)
Q Consensus 895 l~~~l~~~s~~dyr~~ilpl~k~~l~~~L~~~~~~da~~~~~a~~~a~~a~l~~~~~k~ 953 (1691)
=+.+||+-|++-.-..--.+=-++|+.+-++|-+.||.||.-+. ||+|-+.|+.
T Consensus 10 PLIkfGRysaL~lGvaYGa~r~~~l~~~~e~~Rei~a~eKav~d-----a~~a~ekKr~ 63 (81)
T KOG4326|consen 10 PLIKFGRYSALSLGVAYGAFRLRQLREYHEDIREIDAHEKAVAD-----AEEAAEKKRW 63 (81)
T ss_pred HHHHhhHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHh-----HHHHHHHHhh
Confidence 34567777766444333334446777777899999988887655 5555555553
No 213
>PF02099 Josephin: Josephin; InterPro: IPR006155 Human genes containing triplet repeats can markedly expand in length, leading to neuropsychiatric disease. Expansion of triplet repeats explains the phenomenon of anticipation, i.e. the increasing severity or earlier age of onset in successive generations in a pedigree []. A novel gene containing CAG repeats has been identified and mapped to chromosome 14q32.1, the genetic locus for Machado-Joseph disease (MJD). Normally, the gene contains 13-36 CAG repeats, but most clinically diagnosed patients and all affected members of a family with the clinical and pathological diagnosis of MJD show expansion of the repeat number, from 68-79 []. Similar abnormalities in related genes may give rise to diseases similar to MJD. MJD is a neurodegenerative disorder characterised by cerebellar ataxia, pyramidal and extra-pyramidal signs, peripheral nerve palsy, external ophtalmoplegia, facial and lingual fasciculation and bulging. The disease is autosomal dominant, with late onset of symptoms, generally after the fourth decade.; GO: 0008242 omega peptidase activity; PDB: 3O65_G 1YZB_A 2JRI_A 2DOS_A 2AGA_A.
Probab=25.44 E-value=74 Score=35.07 Aligned_cols=31 Identities=16% Similarity=0.383 Sum_probs=25.6
Q ss_pred EEEEEEEeCCeEEEEEEeCCCCcEEEEeCCcce
Q 000306 1574 LVSVVCYYGQHYHCFAYSHDQERWIMYDDKTVK 1606 (1691)
Q Consensus 1574 L~AVVvH~GGHY~AyVR~~~~~~W~~FNDs~Vt 1606 (1691)
..|+|++.+.|.+|..| -+|.||.+|-..-.
T Consensus 99 ~~gfI~N~~~HWf~iRk--i~~~wyNLDS~l~~ 129 (157)
T PF02099_consen 99 EFGFICNLSRHWFAIRK--IGGQWYNLDSKLKE 129 (157)
T ss_dssp SSEEEEECTTEEEEEEE--ETTEEEEECTTTSS
T ss_pred ceEEEeccCcceEEEEe--eCCeeEeccCCCCC
Confidence 35779998899999999 78999999955433
No 214
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=25.24 E-value=1e+02 Score=23.75 Aligned_cols=33 Identities=27% Similarity=0.330 Sum_probs=24.8
Q ss_pred HHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCCh
Q 000306 95 LIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHS 138 (1691)
Q Consensus 95 ~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~s 138 (1691)
-+++..|.+++... -...|+.+|.+|..+.|+.
T Consensus 2 ~~~~~lg~~~~~~~-----------~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLG-----------NYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT------------HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHCcCC
Confidence 45677777777664 2368999999999999973
No 215
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=24.99 E-value=2.2e+02 Score=35.90 Aligned_cols=101 Identities=22% Similarity=0.262 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCCh
Q 000306 59 LECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHS 138 (1691)
Q Consensus 59 ~e~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~s 138 (1691)
.-=++.=+++++|++.+|-+.=.+-+..-|.+. ..++|. ++..|.. .++...|+.|+.--.+|+.|.|.-
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~-~~nakl-----Y~nra~v----~~rLgrl~eaisdc~~Al~iD~sy 320 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNK-KTNAKL-----YGNRALV----NIRLGRLREAISDCNEALKIDSSY 320 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCcccc-chhHHH-----HHHhHhh----hcccCCchhhhhhhhhhhhcCHHH
Confidence 333455788999999999998888887777752 233332 2222221 223456788888889999999988
Q ss_pred HHHHHHHHHHHHHHhccCccHHHHHHHHHHhhccc
Q 000306 139 VEFAHFYANLLYEAANDGKEYEEVVQECERALAIE 173 (1691)
Q Consensus 139 l~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~ 173 (1691)
|.--+..|.....+ +.|++|++-...|+..+
T Consensus 321 ikall~ra~c~l~l----e~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 321 IKALLRRANCHLAL----EKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhc
Confidence 88888888888888 68999999998888753
No 216
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=24.79 E-value=19 Score=43.94 Aligned_cols=53 Identities=25% Similarity=0.498 Sum_probs=34.9
Q ss_pred HHHHhccCCHHHHcceeEeehHHHHHHhhh-----ccCchhHHHHH-------HHHHHHHhcCceeEEecc
Q 000306 334 VRSYWNSMSLEMKRELLKVKVCDIKAHSAS-----LKDGLASDVLA-------EALAFAEENKTWRFWVCC 392 (1691)
Q Consensus 334 v~~yW~~m~~e~~r~fL~V~i~~L~~~~~~-----~~~~~~~~~l~-------~al~fak~n~sW~fWiCp 392 (1691)
+.+||-+|..|.....++-.+....+-|-. .....+..+|+ +|--|| +||||-
T Consensus 82 ~~sFw~tm~eEde~~~~t~kvn~tlsECl~Li~eGcp~eei~~~L~~li~~IP~A~K~a------KYWIC~ 146 (353)
T PF15297_consen 82 VGSFWTTMAEEDEQRLFTEKVNKTLSECLNLIEEGCPKEEILATLSDLIKNIPDAKKLA------KYWICL 146 (353)
T ss_pred ccccccchhhhhhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCchHHHHH------HHHHHH
Confidence 458999999987666666666544443322 22245666777 677777 499995
No 217
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.37 E-value=1.9e+02 Score=37.86 Aligned_cols=38 Identities=21% Similarity=0.384 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHH
Q 000306 122 KNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQEC 166 (1691)
Q Consensus 122 ~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~ 166 (1691)
..|+.++. .+.+....+-++.|..||.+ +.|++|+.-+
T Consensus 96 Dealk~~~---~~~~~~~~ll~L~AQvlYrl----~~ydealdiY 133 (652)
T KOG2376|consen 96 DEALKTLK---GLDRLDDKLLELRAQVLYRL----ERYDEALDIY 133 (652)
T ss_pred HHHHHHHh---cccccchHHHHHHHHHHHHH----hhHHHHHHHH
Confidence 46777777 67777788999999999999 6899998655
No 218
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=23.97 E-value=1.1e+02 Score=29.28 Aligned_cols=41 Identities=17% Similarity=0.279 Sum_probs=33.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHh
Q 000306 64 ALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVA 108 (1691)
Q Consensus 64 al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a 108 (1691)
|.-+++.|++.+|+...+. ....|.. +..+.+-|..++++.
T Consensus 32 a~~~~~~~~y~~A~~~~~~-~~~~~~~---~~~~~l~a~~~~~l~ 72 (84)
T PF12895_consen 32 AQCYFQQGKYEEAIELLQK-LKLDPSN---PDIHYLLARCLLKLG 72 (84)
T ss_dssp HHHHHHTTHHHHHHHHHHC-HTHHHCH---HHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHH-hCCCCCC---HHHHHHHHHHHHHhC
Confidence 6788999999999999988 4455555 677778899999875
No 219
>PHA00732 hypothetical protein
Probab=23.90 E-value=45 Score=32.58 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=21.2
Q ss_pred ecccchhccCChhHHHHhhhhhhc
Q 000306 390 VCCRCNEKFADSESHMHHVVQQHM 413 (1691)
Q Consensus 390 iCp~C~~kF~d~~~~~~Hl~~~H~ 413 (1691)
.|+.|++.|.+..++..|+...|.
T Consensus 3 ~C~~Cgk~F~s~s~Lk~H~r~~H~ 26 (79)
T PHA00732 3 KCPICGFTTVTLFALKQHARRNHT 26 (79)
T ss_pred cCCCCCCccCCHHHHHHHhhcccC
Confidence 599999999999999999976564
No 220
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=23.82 E-value=4.8e+02 Score=33.15 Aligned_cols=89 Identities=21% Similarity=0.179 Sum_probs=64.9
Q ss_pred HHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhc-hhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHH
Q 000306 67 ALRRGNHKKALRLMKELSSRHENSAYVALIHRVQG-TVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFY 145 (1691)
Q Consensus 67 ~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG-~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~ 145 (1691)
++.-|...+|+..|-......|+| |..+-+.| +||+. +|-.+ ..|--.|..+.++-|+=+.--...
T Consensus 378 YLA~~~~kEA~~~An~~~~~~~~s---A~~LtL~g~~V~~~------dp~~r----EKAKkf~ek~L~~~P~Y~~AV~~~ 444 (564)
T KOG1174|consen 378 YLAQKRFKEANALANWTIRLFQNS---ARSLTLFGTLVLFP------DPRMR----EKAKKFAEKSLKINPIYTPAVNLI 444 (564)
T ss_pred HHhhchHHHHHHHHHHHHHHhhcc---hhhhhhhcceeecc------CchhH----HHHHHHHHhhhccCCccHHHHHHH
Confidence 345567778888888888788888 88888887 66652 22111 234455677788889888877777
Q ss_pred HHHHHHHhccCccHHHHHHHHHHhhcc
Q 000306 146 ANLLYEAANDGKEYEEVVQECERALAI 172 (1691)
Q Consensus 146 A~~L~~~~~~~~~Y~ea~~e~~RaL~I 172 (1691)
|.++..- |.|+++++=.+|+|.+
T Consensus 445 AEL~~~E----g~~~D~i~LLe~~L~~ 467 (564)
T KOG1174|consen 445 AELCQVE----GPTKDIIKLLEKHLII 467 (564)
T ss_pred HHHHHhh----CccchHHHHHHHHHhh
Confidence 8777766 5789999999999987
No 221
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=23.46 E-value=2.4e+02 Score=36.96 Aligned_cols=80 Identities=15% Similarity=0.164 Sum_probs=66.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChH
Q 000306 60 ECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSV 139 (1691)
Q Consensus 60 e~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl 139 (1691)
--++.+.++++|+--+|.-..+.-+...|.- +-+-..-|.++.+.-.. ..|+.++.++..|.|+.+
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~h---aeAW~~LG~~qaENE~E-----------~~ai~AL~rcl~LdP~Nl 353 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQH---AEAWQKLGITQAENENE-----------QNAISALRRCLELDPTNL 353 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHH---HHHHHHhhhHhhhccch-----------HHHHHHHHHHHhcCCccH
Confidence 3467789999999989987777788888999 78888999999876322 589999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 000306 140 EFAHFYANLLYEAA 153 (1691)
Q Consensus 140 ~ia~~~A~~L~~~~ 153 (1691)
+--..+|-....-+
T Consensus 354 eaLmaLAVSytNeg 367 (579)
T KOG1125|consen 354 EALMALAVSYTNEG 367 (579)
T ss_pred HHHHHHHHHHhhhh
Confidence 98888887776664
No 222
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=23.01 E-value=53 Score=27.95 Aligned_cols=30 Identities=13% Similarity=0.236 Sum_probs=21.8
Q ss_pred CceeEEecccchhccC----ChhHHHHhhhhhhc
Q 000306 384 KTWRFWVCCRCNEKFA----DSESHMHHVVQQHM 413 (1691)
Q Consensus 384 ~sW~fWiCp~C~~kF~----d~~~~~~Hl~~~H~ 413 (1691)
+...+..|.+|++.|. .+..|+.||...|.
T Consensus 12 ~~~~~a~C~~C~~~~~~~~~~ts~l~~HL~~~hp 45 (45)
T PF02892_consen 12 GDKKKAKCKYCGKVIKYSSGGTSNLKRHLKKKHP 45 (45)
T ss_dssp GCSS-EEETTTTEE-----SSTHHHHHHHHHTTH
T ss_pred CCcCeEEeCCCCeEEeeCCCcHHHHHHhhhhhCc
Confidence 3456789999988664 58999999988774
No 223
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=22.82 E-value=2.7e+02 Score=33.63 Aligned_cols=67 Identities=25% Similarity=0.173 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccC---------ChhHH--HHHHHHHHHHHHHHhhhCCChHHHHHH
Q 000306 76 ALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIID---------DLNSK--QRHLKNAIESAKKAAELSPHSVEFAHF 144 (1691)
Q Consensus 76 Al~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~---------~~~~k--~~~L~~Al~~~~~A~~L~P~sl~ia~~ 144 (1691)
-++.++.-++..|.| ..+|.+.|..+++.|-.+. +..-. ..++..|+..+.+|..|+|+++--+..
T Consensus 62 ~~~~LkaWv~a~P~S---y~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~ 138 (277)
T PF13226_consen 62 RLAVLKAWVAACPKS---YHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIG 138 (277)
T ss_pred HHHHHHHHHHHCCCC---hHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Confidence 466789999999999 9999999999999873111 11111 236678999999999999999865443
Q ss_pred H
Q 000306 145 Y 145 (1691)
Q Consensus 145 ~ 145 (1691)
+
T Consensus 139 m 139 (277)
T PF13226_consen 139 M 139 (277)
T ss_pred H
Confidence 3
No 224
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=22.67 E-value=6.5e+02 Score=32.61 Aligned_cols=95 Identities=18% Similarity=0.038 Sum_probs=59.3
Q ss_pred HHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHH----------HHHHHHHhhhCC
Q 000306 67 ALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNA----------IESAKKAAELSP 136 (1691)
Q Consensus 67 ~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~A----------l~~~~~A~~L~P 136 (1691)
+++.++..+|+++.++..+..|++ +++....|.+.++... +..-.+.|+.. -+.+.+|-.+-=
T Consensus 350 ~~~~nk~~~A~e~~~kal~l~P~~---~~l~~~~a~all~~g~----~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g 422 (484)
T COG4783 350 LLEANKAKEAIERLKKALALDPNS---PLLQLNLAQALLKGGK----PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELG 422 (484)
T ss_pred HHHcCChHHHHHHHHHHHhcCCCc---cHHHHHHHHHHHhcCC----hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhC
Confidence 456688999999999999999999 7888888888887642 22112222221 123333344444
Q ss_pred ChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000306 137 HSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1691)
Q Consensus 137 ~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I 172 (1691)
|..+--..+|..++-. |.|++|..-+.||..-
T Consensus 423 ~~~~a~~A~AE~~~~~----G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 423 NRAEALLARAEGYALA----GRLEQAIIFLMRASQQ 454 (484)
T ss_pred chHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHh
Confidence 4444444555555555 4677777777777664
No 225
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.64 E-value=4.8e+02 Score=29.61 Aligned_cols=91 Identities=20% Similarity=0.236 Sum_probs=62.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhC--CCh
Q 000306 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELS--PHS 138 (1691)
Q Consensus 61 ~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~--P~s 138 (1691)
--.||++-+.|..++||+-.++|....-+| |.-++..-.|+|..+-. +. ..|+.+|.++..-. |--
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lektg~g~-YpvLA~mr~at~~a~kg----dt-------a~AV~aFdeia~dt~~P~~ 129 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEKTGYGS-YPVLARMRAATLLAQKG----DT-------AAAVAAFDEIAADTSIPQI 129 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcCCCc-chHHHHHHHHHHHhhcc----cH-------HHHHHHHHHHhccCCCcch
Confidence 457899999999999999999999665444 33444444465544321 22 37888888876643 444
Q ss_pred H-HHHHHHHHHHHHHhccCccHHHHHHHH
Q 000306 139 V-EFAHFYANLLYEAANDGKEYEEVVQEC 166 (1691)
Q Consensus 139 l-~ia~~~A~~L~~~~~~~~~Y~ea~~e~ 166 (1691)
. ++|.++|-.|+.= ++.|+.+..+.
T Consensus 130 ~rd~ARlraa~lLvD---~gsy~dV~srv 155 (221)
T COG4649 130 GRDLARLRAAYLLVD---NGSYDDVSSRV 155 (221)
T ss_pred hhHHHHHHHHHHHhc---cccHHHHHHHh
Confidence 4 7788887665543 47899998665
No 226
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=22.51 E-value=5.3e+02 Score=31.02 Aligned_cols=99 Identities=15% Similarity=0.133 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCch-h-----------------------hHHHHHhhchhhHHHhhcc
Q 000306 56 AIKLECERALTALRRGNHKKALRLMKELSSRHENSA-Y-----------------------VALIHRVQGTVCVKVASII 111 (1691)
Q Consensus 56 ~ir~e~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~-~-----------------------~a~~h~lqG~i~~~~a~~~ 111 (1691)
..+-..+.|.-++.+|++.+|+..+++++....... . ...-....+.+++.+|.=.
T Consensus 183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~ 262 (352)
T PF02259_consen 183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL 262 (352)
T ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence 456678899999999999999999999997331110 0 0011122334444443211
Q ss_pred CCh--hHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhc
Q 000306 112 DDL--NSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAAN 154 (1691)
Q Consensus 112 ~~~--~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~ 154 (1691)
+.. .....-...++..|..|+.+.|+.-..-+.+|.....+-.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~ 307 (352)
T PF02259_consen 263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLE 307 (352)
T ss_pred HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHH
Confidence 100 0112233568999999999999999877777777666643
No 227
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=22.51 E-value=9e+02 Score=30.19 Aligned_cols=94 Identities=20% Similarity=0.290 Sum_probs=75.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhhCCChHH
Q 000306 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVE 140 (1691)
Q Consensus 61 ~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ 140 (1691)
...++..+-.|++..|++-+..|....|=. |-+..+.+..+.+-. + .+.|+.=++.|..|.-++-+
T Consensus 159 ~~ql~s~~~~GD~~~ai~~i~~llEi~~Wd---a~l~~~Rakc~i~~~----e-------~k~AI~Dlk~askLs~DnTe 224 (504)
T KOG0624|consen 159 VQQLKSASGSGDCQNAIEMITHLLEIQPWD---ASLRQARAKCYIAEG----E-------PKKAIHDLKQASKLSQDNTE 224 (504)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHhcCcch---hHHHHHHHHHHHhcC----c-------HHHHHHHHHHHHhccccchH
Confidence 344567788899999999999999999877 777776666665432 2 25788888999999999999
Q ss_pred HHHHHHHHHHHHhccCccHHHHHHHHHHhhcc
Q 000306 141 FAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1691)
Q Consensus 141 ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I 172 (1691)
...-.+.+||.+| +.+.+..+.+.-|..
T Consensus 225 ~~ykis~L~Y~vg----d~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 225 GHYKISQLLYTVG----DAENSLKEIRECLKL 252 (504)
T ss_pred HHHHHHHHHHhhh----hHHHHHHHHHHHHcc
Confidence 9999999999995 668888888887875
No 228
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=21.90 E-value=4.3e+02 Score=30.61 Aligned_cols=71 Identities=18% Similarity=0.290 Sum_probs=53.2
Q ss_pred hhchhhHHHh---hccCChhHHHHHHHHHHHHHHHHhhhCCCh------HHHHHHHHHHHHHHhccCccHHHHHHHHHHh
Q 000306 99 VQGTVCVKVA---SIIDDLNSKQRHLKNAIESAKKAAELSPHS------VEFAHFYANLLYEAANDGKEYEEVVQECERA 169 (1691)
Q Consensus 99 lqG~i~~~~a---~~~~~~~~k~~~L~~Al~~~~~A~~L~P~s------l~ia~~~A~~L~~~~~~~~~Y~ea~~e~~Ra 169 (1691)
..|.++..+| +...+.+.-..||..|++.|.+|..-...- ..+..+.|.+-..+ |.|++|.+=..|.
T Consensus 116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrl----g~~~eA~~~fs~v 191 (214)
T PF09986_consen 116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRL----GNYDEAKRWFSRV 191 (214)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHh----CCHHHHHHHHHHH
Confidence 6778888876 677777778999999999999999776542 34444555555555 7899999888887
Q ss_pred hccc
Q 000306 170 LAIE 173 (1691)
Q Consensus 170 L~I~ 173 (1691)
++-.
T Consensus 192 i~~~ 195 (214)
T PF09986_consen 192 IGSK 195 (214)
T ss_pred HcCC
Confidence 7753
No 229
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=21.61 E-value=1e+02 Score=40.92 Aligned_cols=80 Identities=28% Similarity=0.273 Sum_probs=61.6
Q ss_pred HcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHH--hhccCChhHHHHHHHHHHHHHHHHhhhCCChHHHHHHHH
Q 000306 69 RRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKV--ASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYA 146 (1691)
Q Consensus 69 ~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~--a~~~~~~~~k~~~L~~Al~~~~~A~~L~P~sl~ia~~~A 146 (1691)
+.|+++|||..+-.|....|. +++-+.++.|.|+.+. ++...|+. ++.-|..-|++|-+..|+-- .-.-+|
T Consensus 255 r~GDRakAL~~~l~lve~eg~--vapDm~Cl~GRIYKDmF~~S~ytDa~----s~~~a~~WyrkaFeveP~~~-sGIN~a 327 (1226)
T KOG4279|consen 255 RPGDRAKALNTVLPLVEKEGP--VAPDMYCLCGRIYKDMFIASNYTDAE----SLNHAIEWYRKAFEVEPLEY-SGINLA 327 (1226)
T ss_pred CCccHHHHHHHHHHHHHhcCC--CCCceeeeechhhhhhhhccCCcchh----hHHHHHHHHHHHhccCchhh-ccccHH
Confidence 458899999999999987753 3489999999999985 55555554 88899999999999998642 233456
Q ss_pred HHHHHHhcc
Q 000306 147 NLLYEAAND 155 (1691)
Q Consensus 147 ~~L~~~~~~ 155 (1691)
.+|...|.+
T Consensus 328 tLL~aaG~~ 336 (1226)
T KOG4279|consen 328 TLLRAAGEH 336 (1226)
T ss_pred HHHHHhhhh
Confidence 677777644
No 230
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=21.25 E-value=1.6e+03 Score=31.83 Aligned_cols=46 Identities=33% Similarity=0.317 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhc
Q 000306 122 KNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALA 171 (1691)
Q Consensus 122 ~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~ 171 (1691)
.+|-.||.+|-+|.|.-.+-|+..|....+. ..+++|..-|-|+=.
T Consensus 509 ~RA~kCf~KAFeLDatdaeaaaa~adtyae~----~~we~a~~I~l~~~q 554 (1238)
T KOG1127|consen 509 KRAKKCFDKAFELDATDAEAAAASADTYAEE----STWEEAFEICLRAAQ 554 (1238)
T ss_pred HHHHHHHHHHhcCCchhhhhHHHHHHHhhcc----ccHHHHHHHHHHHhh
Confidence 6899999999999999999999999999988 578998877655544
No 231
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=20.71 E-value=2.6e+02 Score=31.04 Aligned_cols=83 Identities=12% Similarity=0.074 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccCCCCccccccchhhhHhhhchHHHHHH
Q 000306 121 LKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKESLQDESQQKILTADARIAH 200 (1691)
Q Consensus 121 L~~Al~~~~~A~~L~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~e~~RaL~I~~P~DPa~~~v~~~~~~~~~~~~~rv~~ 200 (1691)
+..|...|.-...+.|+..+....+|..+=.+ |.|++|..-..+|+.+. |.||..+-- .+.+. -.-..+..
T Consensus 51 l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~----g~~~~AI~aY~~A~~L~-~ddp~~~~~-ag~c~---L~lG~~~~ 121 (157)
T PRK15363 51 FAGAARLFQLLTIYDAWSFDYWFRLGECCQAQ----KHWGEAIYAYGRAAQIK-IDAPQAPWA-AAECY---LACDNVCY 121 (157)
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH----hhHHHHHHHHHHHHhcC-CCCchHHHH-HHHHH---HHcCCHHH
Confidence 35788888999999999999999999988888 68999999999999986 888877632 12221 11223455
Q ss_pred HHHHHHHHHHhh
Q 000306 201 VQSELRSLIQKS 212 (1691)
Q Consensus 201 ~~~el~~li~~a 212 (1691)
+++-++.+|..+
T Consensus 122 A~~aF~~Ai~~~ 133 (157)
T PRK15363 122 AIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHHh
Confidence 666666666553
No 232
>PRK15331 chaperone protein SicA; Provisional
Probab=20.65 E-value=9.2e+02 Score=27.06 Aligned_cols=92 Identities=13% Similarity=0.031 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCchhhHHHHHhhchhhHHHhhccCChhHHHHHHHHHHHHHHHHhhh
Q 000306 55 GAIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAEL 134 (1691)
Q Consensus 55 ~~ir~e~~~al~~~~~G~~~kAl~~~~eL~~~h~~S~~~a~~h~lqG~i~~~~a~~~~~~~~k~~~L~~Al~~~~~A~~L 134 (1691)
..+-.--.-|..++..|+.++|...-.=|+.-.|.. +.-..--|-++.. +..| ..|+++|..|..|
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n---~~Y~~GLaa~~Q~----------~k~y-~~Ai~~Y~~A~~l 100 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN---PDYTMGLAAVCQL----------KKQF-QKACDLYAVAFTL 100 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHH----------HHHH-HHHHHHHHHHHHc
Confidence 444444556788999999999998888888544433 2211111222221 2223 7899999999999
Q ss_pred CCChHHHHHHHHHHHHHHhccCccHHHHHH
Q 000306 135 SPHSVEFAHFYANLLYEAANDGKEYEEVVQ 164 (1691)
Q Consensus 135 ~P~sl~ia~~~A~~L~~~~~~~~~Y~ea~~ 164 (1691)
.++........|.-++.++ .-++|..
T Consensus 101 ~~~dp~p~f~agqC~l~l~----~~~~A~~ 126 (165)
T PRK15331 101 LKNDYRPVFFTGQCQLLMR----KAAKARQ 126 (165)
T ss_pred ccCCCCccchHHHHHHHhC----CHHHHHH
Confidence 9999999888888888884 4455543
No 233
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=20.30 E-value=2.7e+02 Score=35.13 Aligned_cols=33 Identities=27% Similarity=0.414 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 000306 55 GAIKLECERALTALRRGNHKKALRLMKELSSRH 87 (1691)
Q Consensus 55 ~~ir~e~~~al~~~~~G~~~kAl~~~~eL~~~h 87 (1691)
-+|..|+.+|-.++++|+...|+++++=+-.+.
T Consensus 417 la~dlei~ka~~~lk~~d~~~aieilkv~~~kd 449 (840)
T KOG2003|consen 417 LAIDLEINKAGELLKNGDIEGAIEILKVFEKKD 449 (840)
T ss_pred hhhhhhhhHHHHHHhccCHHHHHHHHHHHHhcc
Confidence 578899999999999999999999998776444
Done!