Query 000306
Match_columns 1691
No_of_seqs 289 out of 1519
Neff 6.0
Searched_HMMs 29240
Date Tue Mar 26 17:14:18 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000306.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_84-88//hhsearch_pdb/000306hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 1.0 1 1 420.9 27.0 316 1298-1636 6-361 (367)
2 2gfo_A Ubiquitin carboxyl-term 1.0 1 1 415.4 20.8 308 1297-1634 59-396 (396)
3 2ayn_A Ubiquitin carboxyl-term 1.0 1 1 411.2 25.1 311 1297-1635 11-395 (404)
4 3nhe_A Ubiquitin carboxyl-term 1.0 1 1 409.0 23.5 312 1297-1635 6-344 (348)
5 1vjv_A Ubiquitin carboxyl-term 1.0 1 1 403.6 23.9 291 1296-1634 20-414 (415)
6 3i3t_A Ubiquitin carboxyl-term 1.0 1 1 402.6 22.6 310 1299-1635 2-352 (355)
7 1nb8_A Ubiquitin carboxyl-term 1.0 1 1 402.1 27.7 288 1297-1635 3-316 (353)
8 2f1z_A Ubiquitin carboxyl-term 1.0 1 1 400.9 25.9 288 1297-1635 172-485 (522)
9 3ihp_A Ubiquitin carboxyl-term 1.0 1 1 395.3 25.5 292 1297-1634 341-853 (854)
10 3mhs_A Ubiquitin carboxyl-term 1.0 1 1 392.2 21.4 307 1298-1635 139-475 (476)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=1.00 E-value=1 Score=420.88 Aligned_cols=316 Identities=18% Similarity=0.273 Sum_probs=238.0
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----CCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 345565479988754532999999822999999823499987766-----973799999999999750478999863171
Q 000306 1298 VYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHV-----GEPCVVCALYEIFTALSIASTDTRKEAVAP 1372 (1691)
Q Consensus 1298 ~~~~GL~NlG~~NTCYLNSVLQaL~hip~Fr~~Ll~~~~~~~~~~-----~~~ci~~aL~~LF~~L~~ss~~~~~~~VsP 1372 (1691)
.+.+||.|+| |||||||+||||+|+|+|+++|+...+..+... ...++.++|+.||..|+.. ....++|
T Consensus 6 ~g~~GL~NlG--NTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~----~~~~i~P 79 (367)
T 2y6e_A 6 PGLCGLGNLG--NTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSG----RDAHVAP 79 (367)
T ss_dssp TTCCEECCCS--SCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSS----SCSEECC
T ss_pred CCCCCCCCCC--CCHHHHHHHHHHHCCHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCC----CCCCCCH
T ss_conf 8980876488--564989999999777999999973722555044698886429999999999999748----9987387
Q ss_pred HHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-------CCCCC--CCCCCCCCC
Q ss_conf 789999851189970000010044999999999999863099999998742122368-------98865--787753202
Q 000306 1373 TSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCM-------GSWDC--TNSACIVHS 1443 (1691)
Q Consensus 1373 ~~L~~aL~ki~p~~~~F~~g~QQDAqEFL~~LLD~Lheel~~~~~~s~~es~es~~~-------~s~~~--~~~~siI~~ 1443 (1691)
..|+.+++...+. |.+++||||||||.+|||.||+++......+..+....... ..|.. ....++|++
T Consensus 80 ~~~~~~l~~~~~~---f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~ 156 (367)
T 2y6e_A 80 RMFKTQVGRFAPQ---FSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVD 156 (367)
T ss_dssp HHHHHHHHHHCGG---GCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHHHHH---CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 9999999974041---0898787879999999999999987512577644556567960677899999988706982301
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCCCEEEE---CCHHHHHHHH--------HHCCCCCHHHHHHHHHCC------CCCCC
Q ss_conf 331158999962688853422333320230---2501234567--------422468888999987215------53125
Q 000306 1444 LFGMDIFERMNCYSCGLESRHLKYTSFFHN---INASALRTMK--------VMCAESSLDELLNLVEMN------HQLAC 1506 (1691)
Q Consensus 1444 LF~G~l~s~i~C~~C~~~S~~~~~~sf~~~---I~a~~l~~~k--------~~~~~~Sl~dlLk~~~~e------e~~~C 1506 (1691)
+|+|.+.++++|..|+.++.+ +++|+.+ |+........ ......++++||+.|+.. +.|.|
T Consensus 157 ~F~G~l~s~~~C~~C~~~s~~--~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C 234 (367)
T 2y6e_A 157 TFHGLFKSTLVCPECAKVSVT--FDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYC 234 (367)
T ss_dssp HHCEEEEEEEECTTTCCEEEE--EEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-CCEEE
T ss_pred CCCCEEEEEEEECCCCCEEEE--ECCCEEEEEECCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 337688435890899998533--756705773179876775013320564456788889999998616164789987248
Q ss_pred CCCCCCCCCC--CEEEEECCCCCCEEEEEEEEECCCC-CCCCCCCCCCCCCC-EECCCCCCCCC-CCCCCEEEEEEEEEE
Q ss_conf 8999887753--2089871478976999998406887-42011123322531-01143341257-999847999999983
Q 000306 1507 DPGAGGCEKL--NYIHHILSTPPHVFTTVLGWQNTCE-SFDDITATLAALSP-EIDISILYRGL-DPKRRHSLVSVVCYY 1581 (1691)
Q Consensus 1507 e~~~~~C~kk--~~k~~~IsklP~ILiIhLkr~~~~~-s~~KI~~~i~~fP~-~LDLs~f~~g~-~~~~~Y~L~AVVvH~ 1581 (1691)
+ +|++. +.++..|.++|+||+|||+||.... ...|+...+. ||. .|||++|+... .....|+|+|||+|.
T Consensus 235 ~----~C~~~~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~-fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~ 309 (367)
T 2y6e_A 235 P----NCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVE-FPIRGLNMSEFVCNLSARPYVYDLIAVSNHY 309 (367)
T ss_dssp T----TTTEEECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEE-CCSSCEECGGGBSCSSSCCCEEEEEEEEEEE
T ss_pred C----CCCCCCEEEEEEEEECCCCEEEEEEECEEECCCCCEECCCEEE-ECCCCCCHHHHCCCCCCCCCEEEEEEEEECC
T ss_conf 7----8788750789988824885789998476505766335376389-3177677566425878897148899885628
Q ss_pred C----CEEEEEEEECCCCCEEEEECCCCEEECCHHHHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf 8----739999995799949997099633818957887652049865378883157778
Q 000306 1582 G----QHYHCFAYSHDQERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQEVVQDYDEMH 1636 (1691)
Q Consensus 1582 G----GHYiAyvR~~~~~~W~~fDDs~Vt~V~ewe~Vls~~~~~~~qPYILFYe~~e~~ 1636 (1691)
| |||+||+|+...++||+|||+.|+.|++ ++|+. .+||||||++.+..
T Consensus 310 G~~~~GHY~a~~~~~~~~~W~~fnD~~V~~v~~-~~v~~------~~aYiLfY~r~~~~ 361 (367)
T 2y6e_A 310 GAMGVGHYTAYAKNKLNGKWYYFDDSNVSLASE-DQIVT------KAAYVLFYQRRDDE 361 (367)
T ss_dssp CSSSSCEEEEEEECTTTCCEEEEETTEEEECCG-GGTSS------TTEEEEEEEECCC-
T ss_pred CCCCCCEEEEEEECCCCCEEEEECCCCCEECCH-HHCCC------CCCEEEEEEECCCC
T ss_conf 999887366788769999089977987339988-88688------97379999973898
No 2
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=1.00 E-value=1 Score=415.39 Aligned_cols=308 Identities=19% Similarity=0.329 Sum_probs=234.1
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-----CCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 234556547998875453299999982299999982349998776-----697379999999999975047899986317
Q 000306 1297 DVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIH-----VGEPCVVCALYEIFTALSIASTDTRKEAVA 1371 (1691)
Q Consensus 1297 ~~~~~GL~NlG~~NTCYLNSVLQaL~hip~Fr~~Ll~~~~~~~~~-----~~~~ci~~aL~~LF~~L~~ss~~~~~~~Vs 1371 (1691)
..+.+||.|+| |||||||+||||+|+|+|+++|+...+..+.. ....++.++|..++..||.. ....++
T Consensus 59 ~~g~~GL~NlG--NTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~----~~~~i~ 132 (396)
T 2gfo_A 59 GPALTGLRNLG--NTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTG----QYRYIS 132 (396)
T ss_dssp STTCCEECCSS--SCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHS----CEEEEC
T ss_pred CCCCCCCCCCC--CCHHHHHHHHHHHCCHHHHHHHHCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCC----CCCEEC
T ss_conf 77866656168--741672999985378899999970742133123587774109999999999999709----984377
Q ss_pred CHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-------CCCCC--CCCCCCCC
Q ss_conf 1789999851189970000010044999999999999863099999998742122368-------98865--78775320
Q 000306 1372 PTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCM-------GSWDC--TNSACIVH 1442 (1691)
Q Consensus 1372 P~~L~~aL~ki~p~~~~F~~g~QQDAqEFL~~LLD~Lheel~~~~~~s~~es~es~~~-------~s~~~--~~~~siI~ 1442 (1691)
|..|+.+++...+. |.+++||||||||.+|||.||+++.........+....... ..|.. ....++|+
T Consensus 133 P~~f~~~l~~~~~~---f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s~I~ 209 (396)
T 2gfo_A 133 PKDFKITIGKINDQ---FAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIV 209 (396)
T ss_dssp CHHHHHHHHHHCGG---GSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHH
T ss_pred HHHHHHHHHHHCHH---HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 89999999974543---348788775999999999999998653145544555555664256778999876650688340
Q ss_pred CCCCCEEEEEEECCCCCCCCCCCCCCCEEEE-CCHHHHHHHHHHCCCCCHHHHHHHHHCC------CCCCCCCCCCCCCC
Q ss_conf 2331158999962688853422333320230-2501234567422468888999987215------53125899988775
Q 000306 1443 SLFGMDIFERMNCYSCGLESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMN------HQLACDPGAGGCEK 1515 (1691)
Q Consensus 1443 ~LF~G~l~s~i~C~~C~~~S~~~~~~sf~~~-I~a~~l~~~k~~~~~~Sl~dlLk~~~~e------e~~~Ce~~~~~C~k 1515 (1691)
++|+|.+.++++|..|+..+.+ +++|+.+ ++.. . ....++++||+.|+.. +.|.|+ +|+.
T Consensus 210 ~lF~G~l~s~i~C~~C~~~s~~--~e~f~~LsL~ip--~-----~~~~sL~~~L~~f~~~E~l~~~n~~~C~----~C~~ 276 (396)
T 2gfo_A 210 ALFQGQFKSTVQCLTCHKKSRT--FEAFMYLSLPLA--S-----TSKCTLQDCLRLFSKEEKLTDNNRFYCS----HCRA 276 (396)
T ss_dssp HHHCEEEEEEEEETTTCCEEEE--EEEESSEEECCS--C-----SSEEEHHHHHHHHTSCEEECSTTCEEET----TTTE
T ss_pred HHHCCEEEEEEEECCCCCEECC--CCCCEEEEECCC--C-----CCCCCHHHHHHHHCCCCCCCCCCCCCCC----CCCC
T ss_conf 2008688777885799962032--446312333266--3-----4657999999983772251687641157----7555
Q ss_pred C--CEEEEECCCCCCEEEEEEEEECCCC-CCCCCCCCCCCCCC-EECCCCCCCCC-CCCCCEEEEEEEEEEC----CEEE
Q ss_conf 3--2089871478976999998406887-42011123322531-01143341257-9998479999999838----7399
Q 000306 1516 L--NYIHHILSTPPHVFTTVLGWQNTCE-SFDDITATLAALSP-EIDISILYRGL-DPKRRHSLVSVVCYYG----QHYH 1586 (1691)
Q Consensus 1516 k--~~k~~~IsklP~ILiIhLkr~~~~~-s~~KI~~~i~~fP~-~LDLs~f~~g~-~~~~~Y~L~AVVvH~G----GHYi 1586 (1691)
. +.++..|.++|+||+|||+||.... ...|+...+. ||. .|||++|+.+. .....|+|+|||+|.| |||+
T Consensus 277 ~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~K~~~~v~-fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~ 355 (396)
T 2gfo_A 277 RRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVD-FPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYT 355 (396)
T ss_dssp EECEEEEEEEEECCSEEEEEECCEEECSSSEEECCCEEE-CCSSCBCCGGGBCSCCSSCCCBEEEEEEEEESCTTTCEEE
T ss_pred CCCEEEEEEEECCCCEEEEEECCEECCCCCCEECCCEEE-CCHHHCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCEE
T ss_conf 453589999803785799985011025761001674485-4534245664334777787358899999856999998307
Q ss_pred EEEEECCCCCEEEEECCCCEEECCHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 999957999499970996338189578876520498653788831577
Q 000306 1587 CFAYSHDQERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQEVVQDYDE 1634 (1691)
Q Consensus 1587 AyvR~~~~~~W~~fDDs~Vt~V~ewe~Vls~~~~~~~qPYILFYe~~e 1634 (1691)
||+|+...++||+|||..|+.|+ +++|+. .+||||||++.+
T Consensus 356 a~v~~~~~~~W~~fnD~~V~~v~-~~~v~~------~~aYiLfY~r~~ 396 (396)
T 2gfo_A 356 AYCKNAARQRWFKFDDHEVSDIS-VSSVKS------SAAYILFYTSLG 396 (396)
T ss_dssp EEEEETTTTEEEEEETTEEEECC-HHHHSC------TTEEEEEEECC-
T ss_pred EEECCCCCCCEEEEECCCEEECC-HHHCCC------CCCEEEEEEECC
T ss_conf 99857999987997488738988-888689------985699999759
No 3
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=1.00 E-value=1 Score=411.22 Aligned_cols=311 Identities=16% Similarity=0.210 Sum_probs=235.6
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC---CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf 234556547998875453299999982299999982349998776---69737999999999997504789998631717
Q 000306 1297 DVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIH---VGEPCVVCALYEIFTALSIASTDTRKEAVAPT 1373 (1691)
Q Consensus 1297 ~~~~~GL~NlG~~NTCYLNSVLQaL~hip~Fr~~Ll~~~~~~~~~---~~~~ci~~aL~~LF~~L~~ss~~~~~~~VsP~ 1373 (1691)
...++||.|+| |||||||+||||+|+|+|+++|+......... ....+++++|+.||..|+.. ..++.|.
T Consensus 11 ~~~~~GL~NlG--NTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~-----~~~v~P~ 83 (404)
T 2ayn_A 11 MELPCGLTNLG--NTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKT-----SSSIPPI 83 (404)
T ss_dssp CCCCCEECCCS--SCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHH-----CSEECCH
T ss_pred CCCCCCCCCCC--CCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-----CCCCCHH
T ss_conf 69998865477--0439899999987689999999964510134788885438999999999998638-----9838869
Q ss_pred HHHHHHHHHCCCCCCCH------HHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCC
Q ss_conf 89999851189970000------01004499999999999986309999999874212236898865--78775320233
Q 000306 1374 SLRIALSNLYPDSNFFQ------EAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDC--TNSACIVHSLF 1445 (1691)
Q Consensus 1374 ~L~~aL~ki~p~~~~F~------~g~QQDAqEFL~~LLD~Lheel~~~~~~s~~es~es~~~~s~~~--~~~~siI~~LF 1445 (1691)
.|+.+++...|. |. +++||||||||.+|||.||+++......+..+ ......|.. ....++|+++|
T Consensus 84 ~~~~~l~~~~~~---f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~e---~~~~~~~~~~~~~~~s~i~~~F 157 (404)
T 2ayn_A 84 ILLQFLHMAFPQ---FAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKE---TDSSSASAATPSKKKSLIDQFF 157 (404)
T ss_dssp HHHHHHHHHCGG---GGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC---------------------CCHHHHHT
T ss_pred HHHHHHHHHCCH---HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC---CCHHHHHHHHCCCCCCHHHHHC
T ss_conf 999999885700---2023567886654899999999999998744356775221---0012210000011376024515
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCEEEE-CCHHHHHHHHHHCCCCCHHHHHHHHHCCC-CCCCCCCCCCCCCC--CEEEE
Q ss_conf 1158999962688853422333320230-25012345674224688889999872155-31258999887753--20898
Q 000306 1446 GMDIFERMNCYSCGLESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMNH-QLACDPGAGGCEKL--NYIHH 1521 (1691)
Q Consensus 1446 ~G~l~s~i~C~~C~~~S~~~~~~sf~~~-I~a~~l~~~k~~~~~~Sl~dlLk~~~~ee-~~~Ce~~~~~C~kk--~~k~~ 1521 (1691)
+|.+.++++|..|+..+....+++|+.+ ++.. . ...++.++|+.++.++ .+.|+ .|+.. ..++.
T Consensus 158 ~G~l~s~i~C~~C~~~s~s~~~e~f~~Lsl~i~--~------~~~~l~~~L~~~~~e~l~~~c~----~c~~~~~~~k~~ 225 (404)
T 2ayn_A 158 GVEFETTMKCTESEEEEVTKGKENQLQLSCFIN--Q------EVKYLFTGLKLRLQEEITKQSP----TLQRNALYIKSS 225 (404)
T ss_dssp CEEEEEEEEESSSCCCCCBCCEEEESSEEEECS--S------SCCBHHHHHHHTTEECCCCEET----TTTEECCEEEEE
T ss_pred CEEEEEEEEECCCCCCCCCEEECCCCEEEEECC--C------CCCCHHHHHHHHCCCCEEECCH----HHCCCCCEEEEE
T ss_conf 679999998257898168524225746876569--9------8542999998754401036252----009830155553
Q ss_pred ECCCCCCEEEEEEEEECCCC---CCCCCCCCCCCCCCEECCCCCCCC---------------------------------
Q ss_conf 71478976999998406887---420111233225310114334125---------------------------------
Q 000306 1522 ILSTPPHVFTTVLGWQNTCE---SFDDITATLAALSPEIDISILYRG--------------------------------- 1565 (1691)
Q Consensus 1522 ~IsklP~ILiIhLkr~~~~~---s~~KI~~~i~~fP~~LDLs~f~~g--------------------------------- 1565 (1691)
.|.++|+||+|||+||.... ...|+...+. ||..|||.+|+..
T Consensus 226 ~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~-fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (404)
T 2ayn_A 226 KISRLPAYLTIQMVRFFYKEKESVNAKVLKDVK-FPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSS 304 (404)
T ss_dssp EEEECCSSEEEEEECBCCCCSSSSCCBCCCCCB-CCSEEECGGGBCHHHHHHTTTTTGGGTCTTC---------------
T ss_pred EHHHCCCCEEEEEEEEEEECCCCCEECCCCEEC-CCCEEEHHHHCCHHHHHHCCHHHHHHHHHHCCCCHHHHHHCCCCCC
T ss_conf 172199716999998898246683100174464-6825677674485554102013567765531540133311033555
Q ss_pred -----------------CCCCCCEEEEEEEEEEC-----CEEEEEEEECCCCCEEEEECCCCEEECCHHHHHHHHHC-CC
Q ss_conf -----------------79998479999999838-----73999999579994999709963381895788765204-98
Q 000306 1566 -----------------LDPKRRHSLVSVVCYYG-----QHYHCFAYSHDQERWIMYDDKTVKVVGSWSDVLSMCER-GH 1622 (1691)
Q Consensus 1566 -----------------~~~~~~Y~L~AVVvH~G-----GHYiAyvR~~~~~~W~~fDDs~Vt~V~ewe~Vls~~~~-~~ 1622 (1691)
......|+|+|||+|.| |||+||+|+. .++||+|||..|++|+ +++|+...+. ..
T Consensus 305 ~~~~~~~e~~~~~~~~~~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~~-~~~W~~fnD~~V~~v~-~~~v~~~~~g~~~ 382 (404)
T 2ayn_A 305 PQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRK-QDEWIKFDDDKVSIVT-PEDILRLSGGGDW 382 (404)
T ss_dssp -------CCCCCSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEEE-TTEEEEEBTTBCCCBC-HHHHGGGGSSSSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEECC-CCEEEEEECCCCEECC-HHHHHHHHCCCCC
T ss_conf 5553334555554555768885399999999548999998869999899-9928996063456667-9999763079977
Q ss_pred CCCEEEEECCCCC
Q ss_conf 6537888315777
Q 000306 1623 LQPQEVVQDYDEM 1635 (1691)
Q Consensus 1623 ~qPYILFYe~~e~ 1635 (1691)
.+||||||++.+.
T Consensus 383 ~~aYiLfY~r~~~ 395 (404)
T 2ayn_A 383 HIAYVLLYGPRRV 395 (404)
T ss_dssp CEEEEEEEECC--
T ss_pred CEEEEEEEEECCC
T ss_conf 6289999983477
No 4
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=1.00 E-value=1 Score=408.97 Aligned_cols=312 Identities=18% Similarity=0.279 Sum_probs=238.8
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC---CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf 2345565479988754532999999822999999823499987---7669737999999999997504789998631717
Q 000306 1297 DVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEH---IHVGEPCVVCALYEIFTALSIASTDTRKEAVAPT 1373 (1691)
Q Consensus 1297 ~~~~~GL~NlG~~NTCYLNSVLQaL~hip~Fr~~Ll~~~~~~~---~~~~~~ci~~aL~~LF~~L~~ss~~~~~~~VsP~ 1373 (1691)
..+.+||.|+| |||||||+||+|+|+|+|+++++....... ......++.++|+.+|..|+... ....++|.
T Consensus 6 ~~g~~GL~N~G--NtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~---~~~~~~p~ 80 (348)
T 3nhe_A 6 AQGLAGLRNLG--NTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSS---PNDVVSPS 80 (348)
T ss_dssp CCSCCEECCCS--SCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHTTCC---TTCEECCH
T ss_pred CCCCCCCCCCC--CCHHHHHHHHHHHCCHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCC---CCCCCCHH
T ss_conf 99997787588--34798899999966799999985244667614688731189999999999997178---98724899
Q ss_pred HHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-------CCCC--CCCCCCCCCCC
Q ss_conf 89999851189970000010044999999999999863099999998742122368-------9886--57877532023
Q 000306 1374 SLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCM-------GSWD--CTNSACIVHSL 1444 (1691)
Q Consensus 1374 ~L~~aL~ki~p~~~~F~~g~QQDAqEFL~~LLD~Lheel~~~~~~s~~es~es~~~-------~s~~--~~~~~siI~~L 1444 (1691)
.|+.++....+. |.+++||||||||.+|||.||+++......+.......... ..|. .....++|+++
T Consensus 81 ~~~~~l~~~~~~---f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~ 157 (348)
T 3nhe_A 81 EFKTQIQRYAPR---FVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDL 157 (348)
T ss_dssp HHHHHHHHHSGG---GSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHHHHH---HCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 999999986064---07987447999999999999998753046788775222468822778999999875069845555
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCEEEE-CCHHHHHHHHHHCCCCCHHHHHHHHHCCC------CCCCCCCCCCCCCC-
Q ss_conf 31158999962688853422333320230-25012345674224688889999872155------31258999887753-
Q 000306 1445 FGMDIFERMNCYSCGLESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMNH------QLACDPGAGGCEKL- 1516 (1691)
Q Consensus 1445 F~G~l~s~i~C~~C~~~S~~~~~~sf~~~-I~a~~l~~~k~~~~~~Sl~dlLk~~~~ee------~~~Ce~~~~~C~kk- 1516 (1691)
|+|.+.+.++|..|+..+.+ +++|+.+ ++.. . ...+..++.++|+.|+..+ .+.|+ +|+..
T Consensus 158 F~g~~~~~~~C~~C~~~s~~--~e~f~~LsL~i~--~---~~~~~~sl~~~L~~~~~~e~l~~~~~~~C~----~C~~~~ 226 (348)
T 3nhe_A 158 FVGQLKSSLTCTDCGYCSTV--FDPFWDLSLPIA--K---RGYPEVTLMDCMRLFTKEDVLDGDEKPTCC----RCRGRK 226 (348)
T ss_dssp HCEEEEEEEEETTTCCEEEE--EEEESSEEECCC--S---SCSSCEEHHHHHHHHHSCEEECGGGCCEET----TTTEEC
T ss_pred CCEEEEEEEECCCCCCEEEE--ECCCEEEEEECC--C---CCCCCCCHHHHHHHHCCCEEECCCCCEECC----CCCCCC
T ss_conf 12499989994899988644--446547764279--8---556777899999874680571688856788----888856
Q ss_pred -CEEEEECCCCCCEEEEEEEEECCCC-CCCCCCCCCCCCCC-EECCCCCCCCCCCCCCEEEEEEEEEEC----CEEEEEE
Q ss_conf -2089871478976999998406887-42011123322531-011433412579998479999999838----7399999
Q 000306 1517 -NYIHHILSTPPHVFTTVLGWQNTCE-SFDDITATLAALSP-EIDISILYRGLDPKRRHSLVSVVCYYG----QHYHCFA 1589 (1691)
Q Consensus 1517 -~~k~~~IsklP~ILiIhLkr~~~~~-s~~KI~~~i~~fP~-~LDLs~f~~g~~~~~~Y~L~AVVvH~G----GHYiAyv 1589 (1691)
..++..|.++|+||+|||+||.... ...|+...+. ||. .|||++|+........|+|+|||+|.| |||+||+
T Consensus 227 ~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~K~~~~v~-fp~~~ldl~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~~~~ 305 (348)
T 3nhe_A 227 RCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVN-FPLRDLDLREFASENTNHAVYNLYAVSNHSGTTMGGHYTAYC 305 (348)
T ss_dssp CEEEEEEEEECCSEEEEEECCBCCCSSCCCBCCCCEE-CCSSCEECGGGBCTTCCCCEEEEEEEEEEEECSSCEEEEEEE
T ss_pred CEEEEEEEECCCCEEEEEEECCCCCCCCEEECCCCEE-CCCCCCCHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCEEEE
T ss_conf 4899988132986579998753456774145686230-347758776606788899867999999704899996438888
Q ss_pred EECCCCCEEEEECCCCEEECCHHHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf 9579994999709963381895788765204986537888315777
Q 000306 1590 YSHDQERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQEVVQDYDEM 1635 (1691)
Q Consensus 1590 R~~~~~~W~~fDDs~Vt~V~ewe~Vls~~~~~~~qPYILFYe~~e~ 1635 (1691)
|++..++|++|||..|++|++ ++|. ..+||||||++.+.
T Consensus 306 ~~~~~~~W~~~nD~~V~~v~~-~~v~------~~~aY~LfY~r~~~ 344 (348)
T 3nhe_A 306 RSPGTGEWHTFNDSSVTPMSS-SQVR------TSDAYLLFYELASP 344 (348)
T ss_dssp ECTTTCCEEEEETTEEEEECG-GGTC------CTTEEEEEEEECC-
T ss_pred CCCCCCCEEEEECCCCEECCH-HHCC------CCCCEEEEEEECCC
T ss_conf 169989379983898069988-8857------89836999996487
No 5
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=1.00 E-value=1 Score=403.57 Aligned_cols=291 Identities=17% Similarity=0.197 Sum_probs=228.6
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-------CCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 523455654799887545329999998229999998234999877669-------7379999999999975047899986
Q 000306 1296 IDVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVG-------EPCVVCALYEIFTALSIASTDTRKE 1368 (1691)
Q Consensus 1296 ~~~~~~GL~NlG~~NTCYLNSVLQaL~hip~Fr~~Ll~~~~~~~~~~~-------~~ci~~aL~~LF~~L~~ss~~~~~~ 1368 (1691)
....++||.|+| |||||||+||+|+|+|+||++|+........... ..+++++|+.||..|+.. ...
T Consensus 20 ~~~~~~GL~NlG--NTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~----~~~ 93 (415)
T 1vjv_A 20 FAQLPVGFKNMG--NTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNK----SFK 93 (415)
T ss_dssp CCCCCCEECCCS--SCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-----CC
T ss_pred CCCCCCCCEECC--CCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC----CCC
T ss_conf 578988877388--51399999999974799999997126544667764334441138999999999998607----998
Q ss_pred CCCCHHHHHHHHHHCCCCCCCH-------HHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3171789999851189970000-------010044999999999999863099999998742122368988657877532
Q 000306 1369 AVAPTSLRIALSNLYPDSNFFQ-------EAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIV 1441 (1691)
Q Consensus 1369 ~VsP~~L~~aL~ki~p~~~~F~-------~g~QQDAqEFL~~LLD~Lheel~~~~~~s~~es~es~~~~s~~~~~~~siI 1441 (1691)
+++|..|+.+++...+. |. +++||||+|||.+|||.||+++.. ++|
T Consensus 94 ~v~p~~~~~~l~~~~~~---f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~------------------------~~i 146 (415)
T 1vjv_A 94 SVLPVVLLNTLRKCYPQ---FAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD------------------------KFS 146 (415)
T ss_dssp EECCHHHHHHHHHHCGG---GGCBC----CBCCCCHHHHHHHHHHHHHHHHTH------------------------HHH
T ss_pred CCCHHHHHHHHHHHCCH---HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC------------------------CHH
T ss_conf 43779999999875850---210466777766668999999999999987343------------------------469
Q ss_pred CCCCCCEEEEEEECCCCCCCCCCCCCCCEEEE-CCHHHHHHHHHHCCCCCHHHHHHHHHCCC-CCCCCCCCCCCCCC--C
Q ss_conf 02331158999962688853422333320230-25012345674224688889999872155-31258999887753--2
Q 000306 1442 HSLFGMDIFERMNCYSCGLESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMNH-QLACDPGAGGCEKL--N 1517 (1691)
Q Consensus 1442 ~~LF~G~l~s~i~C~~C~~~S~~~~~~sf~~~-I~a~~l~~~k~~~~~~Sl~dlLk~~~~ee-~~~Ce~~~~~C~kk--~ 1517 (1691)
+++|+ .+.++++|..|+..+....+++|+.+ ++.. . ...++.++|+.++.++ .+.|+ .|+.. .
T Consensus 147 ~~~F~-~~~~~~~C~~C~~~s~s~~~e~f~~Lsl~i~--~------~~~~l~~~L~~~~~e~i~~~c~----~c~~~~~a 213 (415)
T 1vjv_A 147 EDFRI-QFKTTIKDTANDNDITVKENESDSKLQCHIS--G------TTNFMRNGLLEGLNEKIEKRSD----LTGANSIY 213 (415)
T ss_dssp TTTCE-EEEEEEEETTEEEEEEEECCCEESCEEECCC--T------TCCBHHHHHHHHHEEC-------------CCCCE
T ss_pred HHHHH-HHEEEEEECCCCCCCCCCCCCCCEEEEECCC--C------CCCHHHHHHHHHHHHHHHHCCC----CCCCCCCE
T ss_conf 99998-6117999779998746313545436651256--6------6123899999874455531461----21786427
Q ss_pred EEEEECCCCCCEEEEEEEEECCCC---CCCCCCCCCCCCCCEECCCCCCCC-----------------------------
Q ss_conf 089871478976999998406887---420111233225310114334125-----------------------------
Q 000306 1518 YIHHILSTPPHVFTTVLGWQNTCE---SFDDITATLAALSPEIDISILYRG----------------------------- 1565 (1691)
Q Consensus 1518 ~k~~~IsklP~ILiIhLkr~~~~~---s~~KI~~~i~~fP~~LDLs~f~~g----------------------------- 1565 (1691)
.++..|.++|+||+|||+||.... ...|+...+. ||..|||++|+..
T Consensus 214 ~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~V~-FP~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~k~ 292 (415)
T 1vjv_A 214 SVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVV-FPFQLDVADMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKR 292 (415)
T ss_dssp EEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCCB-CCSEEECGGGBCHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred EEEEECCCCCCEEEEEEEEEEEECCCCCCHHHCCCCC-CCCEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8887702699715999988998378884043167647-995767678428333222121579999875333345665531
Q ss_pred -----------------------------------------------CCCCCCEEEEEEEEEEC-----CEEEEEEEE-C
Q ss_conf -----------------------------------------------79998479999999838-----739999995-7
Q 000306 1566 -----------------------------------------------LDPKRRHSLVSVVCYYG-----QHYHCFAYS-H 1592 (1691)
Q Consensus 1566 -----------------------------------------------~~~~~~Y~L~AVVvH~G-----GHYiAyvR~-~ 1592 (1691)
......|+|+|||+|.| |||+||+|. .
T Consensus 293 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~s~~~GHY~a~vr~~~ 372 (415)
T 1vjv_A 293 RKFDPSSSENVMTPREQYETQVALNESEKDQWLEEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFIRDEL 372 (415)
T ss_dssp ----------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCTTBCSSSEEEEEEEEEEESSSTTSSEEEEEEECSS
T ss_pred CCCCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEECCC
T ss_conf 02255544443453102220125677655443332053334323235678843889999993589999988799994788
Q ss_pred CCCCEEEEECCCCEEECCHHHHHHHHHCCC-CCCEEEEECCCC
Q ss_conf 999499970996338189578876520498-653788831577
Q 000306 1593 DQERWIMYDDKTVKVVGSWSDVLSMCERGH-LQPQEVVQDYDE 1634 (1691)
Q Consensus 1593 ~~~~W~~fDDs~Vt~V~ewe~Vls~~~~~~-~qPYILFYe~~e 1634 (1691)
..++||+|||+.|+.|+ +++|+...+.+. ..||||||++..
T Consensus 373 ~~~~W~~fnD~~V~~v~-~~~v~~~~~g~~~~~aYiLfY~r~~ 414 (415)
T 1vjv_A 373 DENKWYKFNDDKVSVVE-KEKIESLAGGGESDSALILMYKGFG 414 (415)
T ss_dssp CTTCEEEEETTEEEEEC-HHHHHGGGCCTTSCEEEEEEEEETT
T ss_pred CCCCEEEEECCCCEECC-HHHHHHHCCCCCCCEEEEEEEEECC
T ss_conf 89948996788576727-9997642079876607999999547
No 6
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=1.00 E-value=1 Score=402.60 Aligned_cols=310 Identities=20% Similarity=0.289 Sum_probs=232.5
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf 455654799887545329999998229999998234999877--669737999999999997504789998631717899
Q 000306 1299 YGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHI--HVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLR 1376 (1691)
Q Consensus 1299 ~~~GL~NlG~~NTCYLNSVLQaL~hip~Fr~~Ll~~~~~~~~--~~~~~ci~~aL~~LF~~L~~ss~~~~~~~VsP~~L~ 1376 (1691)
+.+||.|+| |||||||+||+|+|+|+|+++++........ .....++.++|+.+|..|+... ...+++|..|+
T Consensus 2 G~~GL~N~G--NtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~---~~~~v~p~~~~ 76 (355)
T 3i3t_A 2 GHVGLRNLG--NTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPD---SCEAVNPTRFR 76 (355)
T ss_dssp -CCCBCCCS--STHHHHHHHHHHHTCHHHHHHHHHTTHHHHC------CHHHHHHHHHHHHTSSCS---SCCCBCCHHHH
T ss_pred CCCCCEECC--CCHHHHHHHHHHHCCHHHHHHHHHCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC---CCCCCCHHHHH
T ss_conf 974758898--2669899999986789999999725488756789952699999999999984589---88744589999
Q ss_pred HHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC-C----CCCCCC-----------------CCCC
Q ss_conf 99851189970000010044999999999999863099999998742-1----223689-----------------8865
Q 000306 1377 IALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTES-V----ESNCMG-----------------SWDC 1434 (1691)
Q Consensus 1377 ~aL~ki~p~~~~F~~g~QQDAqEFL~~LLD~Lheel~~~~~~s~~es-~----es~~~~-----------------s~~~ 1434 (1691)
.++....+. |.+++||||||||.+|||.||+++........... . .....+ .|..
T Consensus 77 ~~l~~~~~~---f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (355)
T 3i3t_A 77 AVFQKYVPS---FSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKR 153 (355)
T ss_dssp HHHHHHCGG---GCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHH
T ss_pred HHHHHHCHH---HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 999973842---28987667899999999999999765413787523567666764444322357778878899999998
Q ss_pred --CCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEE-CCHHHHHHHHHHCCCCCHHHHHHHHHCCC------CCC
Q ss_conf --787753202331158999962688853422333320230-25012345674224688889999872155------312
Q 000306 1435 --TNSACIVHSLFGMDIFERMNCYSCGLESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMNH------QLA 1505 (1691)
Q Consensus 1435 --~~~~siI~~LF~G~l~s~i~C~~C~~~S~~~~~~sf~~~-I~a~~l~~~k~~~~~~Sl~dlLk~~~~ee------~~~ 1505 (1691)
....++|.++|+|.+.+.+.|..|+..+.+ ++.|..+ ++.. .. ....+..++.++|+.|+..+ .|.
T Consensus 154 ~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~--~e~f~~lsl~i~--~~-~~~~~~~sl~~~L~~~~~~e~l~~~n~~~ 228 (355)
T 3i3t_A 154 YLEREDSKIVDLFVGQLKSCLKCQACGYRSTT--FEVFCDLSLPIP--KK-GFAGGKVSLRDCFNLFTKEEELESENAPV 228 (355)
T ss_dssp HHHHCCSHHHHHHCEEEEEEEEETTTCCEEEE--EEEESSEEECCC--C--------CBHHHHHHHHHCCEEECGGGCCC
T ss_pred HHHCCCCCCCCCCCEEEEEEEEECCCCCCCEE--ECCCEEECCCCC--CC-CCCCCCCCHHHHHHHHCCCCCCCCCCCEE
T ss_conf 52316981545335799955893899998402--222346525678--64-44567658999999857835458999855
Q ss_pred CCCCCCCCCCC--CEEEEECCCCCCEEEEEEEEECCCC-CCCCCCCCCCCCCC-EECCCCCCCCCCCCCCEEEEEEEEEE
Q ss_conf 58999887753--2089871478976999998406887-42011123322531-01143341257999847999999983
Q 000306 1506 CDPGAGGCEKL--NYIHHILSTPPHVFTTVLGWQNTCE-SFDDITATLAALSP-EIDISILYRGLDPKRRHSLVSVVCYY 1581 (1691)
Q Consensus 1506 Ce~~~~~C~kk--~~k~~~IsklP~ILiIhLkr~~~~~-s~~KI~~~i~~fP~-~LDLs~f~~g~~~~~~Y~L~AVVvH~ 1581 (1691)
|+ +|+++ +.++..|.++|+||+|||+||.... ...|+...+. ||. .|||++|.........|+|+|||+|.
T Consensus 229 C~----~C~~~~~a~k~~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~-fp~~~l~l~~~~~~~~~~~~Y~L~avv~H~ 303 (355)
T 3i3t_A 229 CD----RCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVD-FPLQRLSLGDFASDKAGSPVYQLYALCNHS 303 (355)
T ss_dssp CS----SSCCCCCEEEEEEEEECCSEEEEEECCEECCSSCCEECCCCCB-CCSSCEECGGGBC----CCEEEEEEEEEEE
T ss_pred CC----CCCCCCCEEEEEECCCCCHHEEEEHHHEECCCCCCEECCCCEE-CCCCCCCCHHHCCCCCCCCCEEEEEEEEEC
T ss_conf 98----8788662379988113981309976020037898047886160-776546730211589999645999998826
Q ss_pred C----CEEEEEEEECCCCCEEEEECCCCEEECCHHHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf 8----73999999579994999709963381895788765204986537888315777
Q 000306 1582 G----QHYHCFAYSHDQERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQEVVQDYDEM 1635 (1691)
Q Consensus 1582 G----GHYiAyvR~~~~~~W~~fDDs~Vt~V~ewe~Vls~~~~~~~qPYILFYe~~e~ 1635 (1691)
| |||+||+|. .+.||+|||..|++|+ +++|+. .+||||||++.+.
T Consensus 304 G~~~~GHY~~~~~~--~~~W~~~nD~~V~~v~-~~~v~~------~~aYiLfY~r~~~ 352 (355)
T 3i3t_A 304 GSVHYGHYTALCRC--QTGWHVYNDSRVSPVS-ENQVAS------SEGYVLFYQLMQE 352 (355)
T ss_dssp EETTEEEEEEEEEE--TTEEEEEETTEEEEEC-HHHHHT------SCCSEEEEEEC--
T ss_pred CCCCCCEEEEEEEC--CCEEEEECCCCCEECC-HHHCCC------CCCEEEEEEECCC
T ss_conf 78999807999972--9928998198717988-999078------9867999996068
No 7
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=1.00 E-value=1 Score=402.10 Aligned_cols=288 Identities=14% Similarity=0.177 Sum_probs=227.4
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf 23455654799887545329999998229999998234999877669737999999999997504789998631717899
Q 000306 1297 DVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLR 1376 (1691)
Q Consensus 1297 ~~~~~GL~NlG~~NTCYLNSVLQaL~hip~Fr~~Ll~~~~~~~~~~~~~ci~~aL~~LF~~L~~ss~~~~~~~VsP~~L~ 1376 (1691)
..+.+||.|+| |||||||+||||+|+|+|+++++..... ......++.++|+.+|..|+.+. .++.|..|+
T Consensus 3 ~~g~~GL~NlG--nTCYmNSvLQ~L~~~~~~r~~~~~~~~~--~~~~~~~~~~~l~~lf~~l~~~~-----~~~~~~~l~ 73 (353)
T 1nb8_A 3 HTGYVGLKNQG--ATCYMNSLLQTLFFTNQLRKAVYMMPTE--GDDSSKSVPLALQRVFYELQHSD-----KPVGTKKLT 73 (353)
T ss_dssp CSSCCCBCCCS--TTTTHHHHHHHHHTCHHHHHHHHTSCCT--TSCTTTCHHHHHHHHHHHHHHCS-----SCBCCHHHH
T ss_pred CCCCCCCCCCC--HHHHHHHHHHHHHCCHHHHHHHHHCCCC--CCCCCCCHHHHHHHHHHHHHHCC-----CCCCCHHHH
T ss_conf 88998756474--5449899999997779999999837877--77654409999999999886058-----877877998
Q ss_pred HHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 99851189970000010044999999999999863099999998742122368988657877532023311589999626
Q 000306 1377 IALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCY 1456 (1691)
Q Consensus 1377 ~aL~ki~p~~~~F~~g~QQDAqEFL~~LLD~Lheel~~~~~~s~~es~es~~~~s~~~~~~~siI~~LF~G~l~s~i~C~ 1456 (1691)
..++ ++ .|.+++||||||||.+|||.||+++.... ..++|+++|+|.+.+.++|.
T Consensus 74 ~~~~--~~---~~~~~~QqDA~EFl~~LLd~L~~~~~~~~--------------------~~s~i~~~F~g~~~~~i~C~ 128 (353)
T 1nb8_A 74 KSFG--WE---TLDSFMQHDVQELCRVLLDNVENKMKGTC--------------------VEGTIPKLFRGKMVSYIQCK 128 (353)
T ss_dssp HHHT--CC---BTTTTTTSCHHHHHHHHHHHHHHHTTTST--------------------TTTHHHHHHCEEEEEEEEES
T ss_pred HHCC--CC---CCCCCCCHHHHHHHHHHHHHHHHHHCCCC--------------------CCCHHHHHCEEEEEEEEEEC
T ss_conf 6418--87---77865326399999999999998844887--------------------55512350305899999925
Q ss_pred CCCCCCCCCCCCCEEEE-CCHHHHHHHHHHCCCCCHHHHHHHHHCC------CCCCCCCCCCCCCCC-CEEEEECCCCCC
Q ss_conf 88853422333320230-2501234567422468888999987215------531258999887753-208987147897
Q 000306 1457 SCGLESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMN------HQLACDPGAGGCEKL-NYIHHILSTPPH 1528 (1691)
Q Consensus 1457 ~C~~~S~~~~~~sf~~~-I~a~~l~~~k~~~~~~Sl~dlLk~~~~e------e~~~Ce~~~~~C~kk-~~k~~~IsklP~ 1528 (1691)
.|+..+.+ +++|+.+ ++. ....++.++|..|+.. +.|.|+ .|+.. +.++..|.++|+
T Consensus 129 ~C~~~s~~--~e~f~~LsL~i---------~~~~~l~~~L~~~~~~E~l~~~~~~~C~----~c~~~~a~k~~~i~~lP~ 193 (353)
T 1nb8_A 129 EVDYRSDR--REDYYDIQLSI---------KGKKNIFESFVDYVAVEQLDGDNKYDAG----EHGLQEAEKGVKFLTLPP 193 (353)
T ss_dssp SSCCEEEE--EEEESCEEECC---------TTCSBHHHHHHHHTCCEEECTTTCEECG----GGCEECEEEEEEESCCCS
T ss_pred CCCCEECE--EEEEEEEEEEE---------CCCCCHHHHHHHHHCCCCCCCCCCCCCC----CCCCEEEEEEEEHHCCCC
T ss_conf 68970022--22327998897---------9976457799985173424787531477----675175689888400997
Q ss_pred EEEEEEEEECCCC---CCCCCCCCCCCCCCEECCCCCCCCC--CCCCCEEEEEEEEEEC----CEEEEEEEECCCCCEEE
Q ss_conf 6999998406887---4201112332253101143341257--9998479999999838----73999999579994999
Q 000306 1529 VFTTVLGWQNTCE---SFDDITATLAALSPEIDISILYRGL--DPKRRHSLVSVVCYYG----QHYHCFAYSHDQERWIM 1599 (1691)
Q Consensus 1529 ILiIhLkr~~~~~---s~~KI~~~i~~fP~~LDLs~f~~g~--~~~~~Y~L~AVVvH~G----GHYiAyvR~~~~~~W~~ 1599 (1691)
||+|||+||.... ...|+...+. ||..|||++|+... .....|+|+|||+|.| |||+||+|+...++||.
T Consensus 194 vL~i~LkRF~~~~~~~~~~K~~~~v~-fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W~~ 272 (353)
T 1nb8_A 194 VLHLQLMRFMYDPQTDQNIKINDRFE-FPEQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCK 272 (353)
T ss_dssp EEEEEECCCC--------CCCCCCCB-CCSEEECGGGBSSCCTTSCCEEEEEEEEEEESSTTCCCEEEEECTTSSSCCEE
T ss_pred CEEEEEECEEEECCCCCEEECCCEEE-CCCEEEHHHHHCCCCCCCCCEEEEEEEEEEECCCCCCEEEEEEECCCCCCEEE
T ss_conf 25999836798423595075582897-79766523522133789981599999999747898867999994599998899
Q ss_pred EECCCCEEECCHHHHHHHHHCC---------CCCCEEEEECCCCC
Q ss_conf 7099633818957887652049---------86537888315777
Q 000306 1600 YDDKTVKVVGSWSDVLSMCERG---------HLQPQEVVQDYDEM 1635 (1691)
Q Consensus 1600 fDDs~Vt~V~ewe~Vls~~~~~---------~~qPYILFYe~~e~ 1635 (1691)
|||..|+.|+ +++|+..+..+ ..+||||||++.+.
T Consensus 273 fnD~~V~~v~-~~~v~~~~~gg~~~~~~~~~~~~aYiLfY~r~~~ 316 (353)
T 1nb8_A 273 FDDDVVSRCT-KEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESK 316 (353)
T ss_dssp EETTEEEECC-HHHHTGGGSCCC-------CCEEEEEEEEEETTT
T ss_pred EECCCEEECC-HHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCH
T ss_conf 9896028978-8999887238976544467688079999998853
No 8
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=1.00 E-value=1 Score=400.87 Aligned_cols=288 Identities=14% Similarity=0.180 Sum_probs=227.1
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf 23455654799887545329999998229999998234999877669737999999999997504789998631717899
Q 000306 1297 DVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSEHIHVGEPCVVCALYEIFTALSIASTDTRKEAVAPTSLR 1376 (1691)
Q Consensus 1297 ~~~~~GL~NlG~~NTCYLNSVLQaL~hip~Fr~~Ll~~~~~~~~~~~~~ci~~aL~~LF~~L~~ss~~~~~~~VsP~~L~ 1376 (1691)
..+.+||.|+| |||||||+||||+|+|+||++++..... ......++.++|+.+|..|+.+. .++.|..|+
T Consensus 172 ~~g~~GL~NlG--nTCYmNSvLQ~L~~~~~fr~~~~~~~~~--~~~~~~~~~~~l~~lf~~l~~~~-----~~~~~~~l~ 242 (522)
T 2f1z_A 172 HTGYVGLKNQG--ATCYMNSLLQTLFFTNQLRKAVYMMPTE--GDDSSKSVPLALQRVFYELQHSD-----KPVGTKKLT 242 (522)
T ss_dssp TTSCCCBCCC----CTTHHHHHHHHHTCHHHHHHHHTCCCC--SSCTTTCHHHHHHHHHHHHHHCS-----SCBCCTTHH
T ss_pred CCCCCCEECCC--CCHHHHHHHHHHHCCHHHHHHHHHCCCC--CCCCCCHHHHHHHHHHHHHHCCC-----CCCCCHHHH
T ss_conf 67854411386--3188889999986129999999606656--77656528999999999986379-----855767888
Q ss_pred HHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 99851189970000010044999999999999863099999998742122368988657877532023311589999626
Q 000306 1377 IALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIFERMNCY 1456 (1691)
Q Consensus 1377 ~aL~ki~p~~~~F~~g~QQDAqEFL~~LLD~Lheel~~~~~~s~~es~es~~~~s~~~~~~~siI~~LF~G~l~s~i~C~ 1456 (1691)
..++ ++. |.+++||||||||.+|||.||+++.... ..++|+++|+|.+.+.++|.
T Consensus 243 ~~~~--~~~---~~~~~QqDa~Efl~~LLd~L~~~l~~~~--------------------~~s~i~~lF~G~~~s~i~C~ 297 (522)
T 2f1z_A 243 KSFG--WET---LDSFMQHDVQELCRVLLDNVENKMKGTC--------------------VEGTIPKLFRGKMVSYIQCK 297 (522)
T ss_dssp HHTC--CCT---TTSSTTSCHHHHHHHHHHHHHHHHTTST--------------------TTTHHHHHHCEEEEEEECCS
T ss_pred HHCC--CCC---CCCCCCCCHHHHHHHHHHHHHHHCCCCC--------------------CCCCHHHHEEEEEEEEEECC
T ss_conf 6418--765---7876264699999999999986415886--------------------56602131337999988727
Q ss_pred CCCCCCCCCCCCCEEEE-CCHHHHHHHHHHCCCCCHHHHHHHHHCC------CCCCCCCCCCCCCCC-CEEEEECCCCCC
Q ss_conf 88853422333320230-2501234567422468888999987215------531258999887753-208987147897
Q 000306 1457 SCGLESRHLKYTSFFHN-INASALRTMKVMCAESSLDELLNLVEMN------HQLACDPGAGGCEKL-NYIHHILSTPPH 1528 (1691)
Q Consensus 1457 ~C~~~S~~~~~~sf~~~-I~a~~l~~~k~~~~~~Sl~dlLk~~~~e------e~~~Ce~~~~~C~kk-~~k~~~IsklP~ 1528 (1691)
.|+..+.+ +++|+.+ ++. ....++.++|+.|+.. +.|.|+ .|+.. +.++..|.++|+
T Consensus 298 ~C~~~s~~--~e~f~~LsL~i---------~~~~~l~~~L~~~~~~E~l~~~n~~~C~----~c~~~~a~k~~~i~~lP~ 362 (522)
T 2f1z_A 298 EVDYRSDR--REDYYDIQLSI---------KGKKNIFESFVDYVAVEQLDGDNKYDAG----EHGLQEAEKGVKFLTLPP 362 (522)
T ss_dssp SSCCCCCE--EEEESCEEECC---------TTCCBHHHHHHHHTCEEEECTTSCBCCG----GGCSBCEEEEEEESCCCS
T ss_pred CCCCEEEE--EEEEEEEEEEE---------CCCCCCHHHHHHHHCEEECCCCCEEECC----CCCCCCEEEEEEEECCCC
T ss_conf 89955536--63207898884---------7864406799874050222776204047----677653679999341996
Q ss_pred EEEEEEEEECCCC---CCCCCCCCCCCCCCEECCCCCCCCC--CCCCCEEEEEEEEEEC----CEEEEEEEECCCCCEEE
Q ss_conf 6999998406887---4201112332253101143341257--9998479999999838----73999999579994999
Q 000306 1529 VFTTVLGWQNTCE---SFDDITATLAALSPEIDISILYRGL--DPKRRHSLVSVVCYYG----QHYHCFAYSHDQERWIM 1599 (1691)
Q Consensus 1529 ILiIhLkr~~~~~---s~~KI~~~i~~fP~~LDLs~f~~g~--~~~~~Y~L~AVVvH~G----GHYiAyvR~~~~~~W~~ 1599 (1691)
||+|||+||.... ...|+...+. ||..|||++|+... .....|+|+|||+|.| |||+||+|+...++||+
T Consensus 363 vL~i~LkRF~~~~~~~~~~Ki~~~v~-fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W~~ 441 (522)
T 2f1z_A 363 VLHLQLMRFMYDPQTDQNIKINDRFE-FPEQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCK 441 (522)
T ss_dssp EEEEEECCEEECSSSSCEEECCCCCB-CCSEEECGGGBSSCCTTSCCEEEEEEEEEEECSSSCSEEEEEECTTSSSCCEE
T ss_pred EEEEEEEEEEECCCCCCCEECCCEEE-CCCEECCHHHHCCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCEEE
T ss_conf 38999874788166785267682796-78813443540544689983799999999645699866899994389998999
Q ss_pred EECCCCEEECCHHHHHHHHHCC---------CCCCEEEEECCCCC
Q ss_conf 7099633818957887652049---------86537888315777
Q 000306 1600 YDDKTVKVVGSWSDVLSMCERG---------HLQPQEVVQDYDEM 1635 (1691)
Q Consensus 1600 fDDs~Vt~V~ewe~Vls~~~~~---------~~qPYILFYe~~e~ 1635 (1691)
|||..|+.|+ +++|+..+..+ ..+||||||++.+.
T Consensus 442 fnD~~V~~v~-~~~v~~~~~Gg~~~~~~~~~~~~aYiLfY~r~~~ 485 (522)
T 2f1z_A 442 FDDDVVSRCT-KEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESK 485 (522)
T ss_dssp EETTEEEECC-HHHHSTTSSCCC--------CEEEEEEEEEETTS
T ss_pred EECCEEEECC-HHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCC
T ss_conf 9783248998-9999886338875433457689349999998882
No 9
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=395.29 Aligned_cols=292 Identities=14% Similarity=0.203 Sum_probs=223.6
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC---CCCCCCCCHHHHHHHHHHHHHHHCCCC---------
Q ss_conf 23455654799887545329999998229999998234999---877669737999999999997504789---------
Q 000306 1297 DVYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPS---EHIHVGEPCVVCALYEIFTALSIASTD--------- 1364 (1691)
Q Consensus 1297 ~~~~~GL~NlG~~NTCYLNSVLQaL~hip~Fr~~Ll~~~~~---~~~~~~~~ci~~aL~~LF~~L~~ss~~--------- 1364 (1691)
..+.+||.|+| ||||||||||+|+|+|+|+++|+..... ........++.++|+.||..|+.....
T Consensus 341 ~~G~~GL~NlG--NTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~~ 418 (854)
T 3ihp_A 341 GPGYTGIRNLG--NSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDG 418 (854)
T ss_dssp STTCCCBCCCS--SCHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHHHHHHHHHHSCC-----------
T ss_pred CCCCCCEEECC--CCEEHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 78865517667--7620337999985729999999854344302566785411889999999987456645444211222
Q ss_pred -------CCCCCCCCHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -------9986317178999985118997000001004499999999999986309999999874212236898865787
Q 000306 1365 -------TRKEAVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNS 1437 (1691)
Q Consensus 1365 -------~~~~~VsP~~L~~aL~ki~p~~~~F~~g~QQDAqEFL~~LLD~Lheel~~~~~~s~~es~es~~~~s~~~~~~ 1437 (1691)
.....++|..|+.+++...+. |.+++||||||||.+|||.||+++..
T Consensus 419 ~~~~~~~~~~~~isP~~f~~~l~~~~~~---F~~~~QQDA~EFl~~LLd~L~~el~~----------------------- 472 (854)
T 3ihp_A 419 ERVPEQKEVQDGIAPRMFKALIGKGHPE---FSTNRQQDAQEFFLHLINMVERNCRS----------------------- 472 (854)
T ss_dssp ----------CCBCCHHHHHHHTTTCTT---TTSSSCCBHHHHHHHHHHHHHHTCTT-----------------------
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCC---CCCCCCCCHHHHHHHHHHHHHHHHCC-----------------------
T ss_conf 2333334677754819999998640331---12144337899999999999987365-----------------------
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEE---CCHHHHHHH------------H---------HHCCCCCHHH
Q ss_conf 753202331158999962688853422333320230---250123456------------7---------4224688889
Q 000306 1438 ACIVHSLFGMDIFERMNCYSCGLESRHLKYTSFFHN---INASALRTM------------K---------VMCAESSLDE 1493 (1691)
Q Consensus 1438 ~siI~~LF~G~l~s~i~C~~C~~~S~~~~~~sf~~~---I~a~~l~~~------------k---------~~~~~~Sl~d 1493 (1691)
.++|.++|+|.+.++++|..|+.++.+ +++|..+ |+....... . ...+..+|.+
T Consensus 473 ~s~i~~lF~G~l~s~i~C~~C~~vs~t--~e~F~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~sL~d 550 (854)
T 3ihp_A 473 SENPNEVFRFLVEEKIKCLATEKVKYT--QRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMALPELVRAQVPFSS 550 (854)
T ss_dssp SCCGGGGTCEEEEEEEEETTTTEEEEE--EEEESEEEECCCGGGCTTHHHHHHHHHHHHHHHHTTCCCCCCCCEECCHHH
T ss_pred CCCCHHHCCCEEEEEEEECCCCCEEEE--EEECEEEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 688222107358899996489977677--630647884578632344210001001111000235544324567777999
Q ss_pred HHHHHHCCCC---CCCCCCCCCCCCC--CEEEEECCCCCCEEEEEEEEECCC--CCCCCCCCCCCCCCCEECCCCCCCC-
Q ss_conf 9998721553---1258999887753--208987147897699999840688--7420111233225310114334125-
Q 000306 1494 LLNLVEMNHQ---LACDPGAGGCEKL--NYIHHILSTPPHVFTTVLGWQNTC--ESFDDITATLAALSPEIDISILYRG- 1565 (1691)
Q Consensus 1494 lLk~~~~ee~---~~Ce~~~~~C~kk--~~k~~~IsklP~ILiIhLkr~~~~--~s~~KI~~~i~~fP~~LDLs~f~~g- 1565 (1691)
||+.|+..+. |.|+ .|+.+ ..++..|.++|+||+|||+||... ....|+...+. ||..|||++|+..
T Consensus 551 cL~~f~~~E~Le~y~C~----~C~~k~~a~K~~~i~~lP~vLiihLkRF~~d~~~~~~Ki~~~V~-FP~~LDl~~y~~~~ 625 (854)
T 3ihp_A 551 CLEAYGAPEQVDDFWST----ALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIE-MPEELDISQLRGTG 625 (854)
T ss_dssp HHHHHHSCEEEEEEEET----TTTEEEEEEEEEEESSCCSEEEEEECCEEECGGGCEEECCEECC-CCSEEECGGGBCCC
T ss_pred HHHHHCCCEEEEEEECC----CCCCCCEEEEEEEEEECCCEEEEEEEHHEECCCCCEEECCEEEE-CCCCEEHHHHCCCC
T ss_conf 99985584075331035----56873005388882128966799945313567773277886985-68807068850678
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000306 1566 L------------------------------------------------------------------------------- 1566 (1691)
Q Consensus 1566 ~------------------------------------------------------------------------------- 1566 (1691)
.
T Consensus 626 ~q~~E~~lp~~~~~~~~~~~~~~~~~d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmdd~di~~p~~~~~ 705 (854)
T 3ihp_A 626 LQPGEEELPDIAPPLVTPDEPKAPMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPG 705 (854)
T ss_dssp SCTTCCBCCCC----------------CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTTSCGGGSCCCCC-
T ss_pred CCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 89872121335665556554456676889999998648977888888863179856777677764167633246555666
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000306 1567 -------------------------------------------------------------------------------- 1566 (1691)
Q Consensus 1567 -------------------------------------------------------------------------------- 1566 (1691)
T Consensus 706 ~~~~~s~~~~~~~~~~e~i~~l~~mGf~~~~a~~aL~~t~~~~eraidwlfs~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (854)
T 3ihp_A 706 SSGPGSTSAAADPPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDLDAEAAMDISEGRSAADSISESVP 785 (854)
T ss_dssp -------------CCHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC----------------
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 66666655556889989999999828878899999986057387777764068443343210012222334565434455
Q ss_pred ------CCCCCEEEEEEEEEEC-----CEEEEEEEECCCCCEEEEECCCCEEECCHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf ------9998479999999838-----7399999957999499970996338189578876520498653788831577
Q 000306 1567 ------DPKRRHSLVSVVCYYG-----QHYHCFAYSHDQERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQEVVQDYDE 1634 (1691)
Q Consensus 1567 ------~~~~~Y~L~AVVvH~G-----GHYiAyvR~~~~~~W~~fDDs~Vt~V~ewe~Vls~~~~~~~qPYILFYe~~e 1634 (1691)
+....|+|+|||+|.| ||||||+|. .++||+|||+.|+.+.+ . ....+|||||+|.+
T Consensus 786 ~~~~~~~~~~~Y~L~avi~H~G~~~~~GHY~~~~~~--~~~W~~~nD~~V~~~~~---~------~~~~aYilfY~R~~ 853 (854)
T 3ihp_A 786 VGPKVRDGPGKYQLFAFISHMGTSTMCGHYVCHIKK--EGRWVIYNDQKVCASEK---P------PKDLGYIYFYQRVA 853 (854)
T ss_dssp --CCCCCCCSEEEEEEEEEEESSCSSCCEEEEEEEE--TTEEEEEETTEEEECSS---C------CTTSCSEEEEEECC
T ss_pred CCCCCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEE--CCEEEEEECCEEEECCC---C------CCCCCEEEEEEECC
T ss_conf 557888898459999999964489997282999975--99899997771587146---6------77851699999568
No 10
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=1.00 E-value=1 Score=392.20 Aligned_cols=307 Identities=19% Similarity=0.266 Sum_probs=225.8
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHHHHHHHHHCCCC-----CCCCCC
Q ss_conf 34556547998875453299999982299999982349998--77669737999999999997504789-----998631
Q 000306 1298 VYGAGLKNEVGEYNCFLNVIIQSLWHLRRFREEFSRRSPSE--HIHVGEPCVVCALYEIFTALSIASTD-----TRKEAV 1370 (1691)
Q Consensus 1298 ~~~~GL~NlG~~NTCYLNSVLQaL~hip~Fr~~Ll~~~~~~--~~~~~~~ci~~aL~~LF~~L~~ss~~-----~~~~~V 1370 (1691)
.+.+||.|+| |||||||+||+|+|+|+|+++++...+.. .......|+.++|..+|..++..... .....+
T Consensus 139 ~G~~GL~NlG--NTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~ 216 (476)
T 3mhs_A 139 DGLSGLINMG--STCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQASSSSTSTN 216 (476)
T ss_dssp TCCCCCCCSS--STHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCTTTCHHHHHHHHHHHHHSCCCC--------CCC
T ss_pred CCCCCCCCCC--CCHHHHHHHHHHHCCHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 8997877088--46799899999867899999987450355445788641058999999999961203333456665565
Q ss_pred CCHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 71789999851189970000010044999999999999863099999998742122368988657877532023311589
Q 000306 1371 APTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTPGSNVSDTESVESNCMGSWDCTNSACIVHSLFGMDIF 1450 (1691)
Q Consensus 1371 sP~~L~~aL~ki~p~~~~F~~g~QQDAqEFL~~LLD~Lheel~~~~~~s~~es~es~~~~s~~~~~~~siI~~LF~G~l~ 1450 (1691)
.|..+...+..++.....|.+++||||||||.+|||.||+++........ +... .......++|+++|+|.+.
T Consensus 217 ~~~~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~-~~~~------~~~~~~~s~i~~~F~G~l~ 289 (476)
T 3mhs_A 217 RQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAK-EVSR------ANNKQCECIVHTVFEGSLE 289 (476)
T ss_dssp SCHHHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC--------------CCCSCCSHHHHHSCEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC-CCCC------CCCCCCCCCCEEECCEEEE
T ss_conf 75008999999887451238887759999999999999999764156653-3454------4556688800211325999
Q ss_pred EEEECCCCCCCCCCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHHHHHHCCC-----CCCCCCCCCCCCCC--CEEEEEC
Q ss_conf 9996268885342233332023025012345674224688889999872155-----31258999887753--2089871
Q 000306 1451 ERMNCYSCGLESRHLKYTSFFHNINASALRTMKVMCAESSLDELLNLVEMNH-----QLACDPGAGGCEKL--NYIHHIL 1523 (1691)
Q Consensus 1451 s~i~C~~C~~~S~~~~~~sf~~~I~a~~l~~~k~~~~~~Sl~dlLk~~~~ee-----~~~Ce~~~~~C~kk--~~k~~~I 1523 (1691)
++++|..|+.++... +++|+.+ .... ....++.++|+.|+..+ .|.|+ .|+.. ..++..|
T Consensus 290 ~~~~C~~C~~~s~~~-~e~f~~L-sL~i-------~~~~sl~~~L~~~~~~E~l~~~~~~C~----~C~~~~~a~k~~~i 356 (476)
T 3mhs_A 290 SSIVCPGCQNNSKTT-IDPFLDL-SLDI-------KDKKKLYECLDSFHKKEQLKDFNYHCG----ECNSTQDAIKQLGI 356 (476)
T ss_dssp EEEECTTTCCCCEEE-EEEESCE-EECC-------TTCCBHHHHHHHHHCCEECSSCCCEET----TTTEECCCEEEEEE
T ss_pred EEEEECCCCCEECCC-CCCHHHH-CCCH-------HHHHHHHHHHHHHCCHHHCCCCCCCCC----CCCCCCCEEEEEEC
T ss_conf 889989999851786-5666661-3201-------246689999998638422147787688----66885657899870
Q ss_pred CCCCCEEEEEEEEECCC--CCCCCCCCCCCCCCCEECCCCCCCCC----------CCCCCEEEEEEEEEEC----CEEEE
Q ss_conf 47897699999840688--74201112332253101143341257----------9998479999999838----73999
Q 000306 1524 STPPHVFTTVLGWQNTC--ESFDDITATLAALSPEIDISILYRGL----------DPKRRHSLVSVVCYYG----QHYHC 1587 (1691)
Q Consensus 1524 sklP~ILiIhLkr~~~~--~s~~KI~~~i~~fP~~LDLs~f~~g~----------~~~~~Y~L~AVVvH~G----GHYiA 1587 (1691)
.++|+||+|||+||... ....|+...+. ||..|||++|+... .+...|+|+|||+|.| |||+|
T Consensus 357 ~~lP~vL~i~LkRF~~~~~~~~~K~~~~V~-fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a 435 (476)
T 3mhs_A 357 HKLPSVLVLQLKRFEHLLNGSNRKLDDFIE-FPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVNEGHYIA 435 (476)
T ss_dssp EEBCSEEEEEECCEEECTTSCEEECCCCCB-CCSEEECGGGBSCCBCCC--CCCBCCCEEEEEEEEEEEEECSSSEEEEE
T ss_pred CCCCCCEEEEEEECCCCCCCCEEECCEEEC-CCCEEECHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEE
T ss_conf 149711399844021548997178987873-8970003432375323432234678997389999999689998875499
Q ss_pred EEEECCCCCEEEEECCCCEEECCHHHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf 999579994999709963381895788765204986537888315777
Q 000306 1588 FAYSHDQERWIMYDDKTVKVVGSWSDVLSMCERGHLQPQEVVQDYDEM 1635 (1691)
Q Consensus 1588 yvR~~~~~~W~~fDDs~Vt~V~ewe~Vls~~~~~~~qPYILFYe~~e~ 1635 (1691)
|+|. .+++||+|||..|++|+ +++|+. .+||||||++++.
T Consensus 436 ~vr~-~~~~W~~fnD~~V~~v~-~~~v~~------~~aYiLfY~r~~~ 475 (476)
T 3mhs_A 436 FCKI-SGGQWFKFNDSMVSSIS-QEEVLK------EQAYLLFYTIRQV 475 (476)
T ss_dssp EEEC-TTSCEEEEETTEEEEEC-HHHHTT------SCEEEEEEEEEEE
T ss_pred EEEC-CCCCEEEEECCCEEECC-HHHHCC------CCCEEEEEEEECC
T ss_conf 9988-98918999498158999-899566------9867999998438
Done!