Query 000307
Match_columns 1690
No_of_seqs 97 out of 104
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 03:42:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000307.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000307hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4839 Uncharacterized conser 100.0 9E-72 2E-76 645.9 8.6 708 65-986 14-752 (753)
2 KOG4839 Uncharacterized conser 100.0 1.1E-43 2.4E-48 413.0 11.6 564 861-1473 38-671 (753)
3 TIGR02917 PEP_TPR_lipo putativ 99.9 2.1E-20 4.5E-25 223.4 41.5 401 1030-1484 21-452 (899)
4 TIGR02917 PEP_TPR_lipo putativ 99.9 3.9E-19 8.5E-24 212.5 46.2 411 1050-1513 275-726 (899)
5 PRK11447 cellulose synthase su 99.8 1.5E-15 3.3E-20 197.4 46.2 589 1008-1682 32-734 (1157)
6 PRK09782 bacteriophage N4 rece 99.8 5.9E-16 1.3E-20 198.3 39.8 311 1031-1380 39-404 (987)
7 PRK11447 cellulose synthase su 99.7 7.8E-16 1.7E-20 200.0 29.8 360 1049-1454 282-739 (1157)
8 TIGR00990 3a0801s09 mitochondr 99.7 1.1E-14 2.4E-19 177.4 27.6 78 1048-1134 139-220 (615)
9 PRK15174 Vi polysaccharide exp 99.7 2.6E-14 5.7E-19 176.8 28.5 306 1050-1474 90-403 (656)
10 PRK10049 pgaA outer membrane p 99.6 1.4E-13 3.1E-18 172.6 29.6 380 1050-1487 29-451 (765)
11 PRK10049 pgaA outer membrane p 99.6 3.7E-13 8.1E-18 169.0 32.2 358 1027-1459 45-460 (765)
12 TIGR00990 3a0801s09 mitochondr 99.6 2.2E-13 4.7E-18 166.3 29.0 351 1031-1470 160-584 (615)
13 PRK15174 Vi polysaccharide exp 99.5 7E-13 1.5E-17 164.2 26.0 270 1024-1349 103-387 (656)
14 PRK11788 tetratricopeptide rep 99.5 2.2E-12 4.7E-17 146.1 26.5 295 1032-1382 36-348 (389)
15 PRK14574 hmsH outer membrane p 99.5 4.2E-11 9.1E-16 152.1 32.2 383 1049-1484 47-471 (822)
16 PRK09782 bacteriophage N4 rece 99.4 1.8E-10 4E-15 148.7 29.6 186 1298-1513 493-700 (987)
17 KOG0495 HAT repeat protein [RN 99.3 1.4E-09 3E-14 131.9 32.5 579 941-1683 256-878 (913)
18 PRK11788 tetratricopeptide rep 99.3 1.6E-10 3.6E-15 130.9 22.9 266 1026-1342 64-346 (389)
19 PF13429 TPR_15: Tetratricopep 99.3 3.2E-12 6.8E-17 141.0 6.8 259 1032-1379 9-275 (280)
20 KOG2002 TPR-containing nuclear 99.3 2.7E-09 6E-14 133.8 30.3 470 1028-1584 230-757 (1018)
21 PRK14720 transcript cleavage f 99.2 2.3E-11 5E-16 154.3 10.9 136 1340-1498 23-182 (906)
22 PRK14574 hmsH outer membrane p 99.2 9.4E-10 2E-14 140.0 24.6 303 1050-1377 116-509 (822)
23 KOG4626 O-linked N-acetylgluco 99.2 4.3E-10 9.3E-15 135.5 19.1 382 1048-1507 128-534 (966)
24 KOG2076 RNA polymerase III tra 99.1 6.7E-08 1.5E-12 121.1 35.1 571 1032-1660 140-855 (895)
25 PRK10747 putative protoheme IX 99.1 4.4E-09 9.6E-14 123.4 23.5 279 1049-1376 97-385 (398)
26 PLN03081 pentatricopeptide (PP 99.1 1.2E-08 2.6E-13 126.9 26.7 377 1049-1487 100-518 (697)
27 TIGR00540 hemY_coli hemY prote 99.1 3.9E-09 8.4E-14 124.0 20.0 273 1048-1377 96-395 (409)
28 PRK12370 invasion protein regu 99.0 3E-09 6.4E-14 129.8 17.2 193 1048-1263 273-486 (553)
29 PLN03077 Protein ECB2; Provisi 99.0 2.9E-08 6.2E-13 126.3 26.0 393 1049-1507 266-706 (857)
30 KOG4626 O-linked N-acetylgluco 99.0 3.6E-09 7.7E-14 127.8 15.9 323 1023-1379 142-524 (966)
31 KOG2002 TPR-containing nuclear 98.9 5.5E-08 1.2E-12 122.5 22.4 343 1023-1484 406-772 (1018)
32 PF08424 NRDE-2: NRDE-2, neces 98.9 1E-08 2.2E-13 118.2 13.9 156 1023-1178 11-182 (321)
33 KOG0495 HAT repeat protein [RN 98.9 7.8E-07 1.7E-11 108.9 28.4 322 1048-1477 528-866 (913)
34 TIGR02521 type_IV_pilW type IV 98.8 7E-08 1.5E-12 98.1 15.7 130 1029-1178 29-163 (234)
35 PRK12370 invasion protein regu 98.8 3.7E-08 7.9E-13 120.4 16.2 135 1024-1178 331-469 (553)
36 PF13429 TPR_15: Tetratricopep 98.8 2.7E-08 5.8E-13 110.2 12.4 253 1154-1487 12-272 (280)
37 PLN03218 maturation of RBCL 1; 98.8 1.3E-06 2.8E-11 114.6 28.5 274 1049-1377 450-744 (1060)
38 PLN03218 maturation of RBCL 1; 98.8 3.1E-06 6.7E-11 111.1 30.7 365 1050-1465 384-795 (1060)
39 PRK11189 lipoprotein NlpI; Pro 98.7 3.4E-07 7.4E-12 103.9 18.7 201 1031-1263 64-282 (296)
40 TIGR02521 type_IV_pilW type IV 98.7 2.2E-07 4.7E-12 94.5 15.1 158 1025-1206 59-222 (234)
41 PF10650 zf-C3H1: Putative zin 98.7 3.6E-09 7.9E-14 79.9 1.0 22 877-898 1-23 (23)
42 PLN03081 pentatricopeptide (PP 98.7 4.7E-06 1E-10 104.3 28.5 329 1050-1455 203-557 (697)
43 KOG0547 Translocase of outer m 98.7 2.1E-06 4.5E-11 103.1 23.7 144 1296-1459 341-495 (606)
44 COG2956 Predicted N-acetylgluc 98.7 1.6E-06 3.5E-11 100.3 20.6 241 1050-1313 49-314 (389)
45 TIGR00540 hemY_coli hemY prote 98.7 3.4E-06 7.3E-11 99.6 24.0 288 1078-1457 92-401 (409)
46 PLN03077 Protein ECB2; Provisi 98.6 2.5E-06 5.4E-11 108.9 24.1 349 1049-1487 336-715 (857)
47 KOG0547 Translocase of outer m 98.6 2.8E-06 6E-11 102.0 22.3 274 1032-1468 277-577 (606)
48 PRK10370 formate-dependent nit 98.6 4.5E-07 9.8E-12 98.2 14.7 118 1047-1178 50-172 (198)
49 KOG1915 Cell cycle control pro 98.6 4.8E-05 1E-09 91.4 32.1 483 1022-1560 64-630 (677)
50 KOG2076 RNA polymerase III tra 98.5 1.9E-05 4E-10 100.0 27.2 370 1030-1457 413-851 (895)
51 PRK11189 lipoprotein NlpI; Pro 98.5 1.7E-06 3.7E-11 98.3 16.6 116 1047-1178 37-160 (296)
52 TIGR02552 LcrH_SycD type III s 98.5 9.4E-07 2E-11 86.9 12.5 106 1057-1178 4-113 (135)
53 KOG0624 dsRNA-activated protei 98.5 4.5E-06 9.7E-11 97.1 19.4 349 1029-1459 36-426 (504)
54 PRK10370 formate-dependent nit 98.4 2.6E-06 5.5E-11 92.4 14.0 107 1022-1141 64-177 (198)
55 TIGR03302 OM_YfiO outer membra 98.4 5.1E-06 1.1E-10 89.4 16.1 172 1029-1206 31-222 (235)
56 PRK15359 type III secretion sy 98.4 1.7E-06 3.7E-11 89.1 11.3 103 1057-1178 14-120 (144)
57 PRK10747 putative protoheme IX 98.4 4.1E-05 8.9E-10 90.5 24.1 283 1078-1457 92-392 (398)
58 COG3063 PilF Tfp pilus assembl 98.4 4.2E-06 9.2E-11 93.6 14.0 147 1032-1202 36-188 (250)
59 TIGR03302 OM_YfiO outer membra 98.3 6.2E-06 1.3E-10 88.8 13.3 128 1032-1177 71-230 (235)
60 COG2956 Predicted N-acetylgluc 98.2 7.2E-05 1.6E-09 87.1 20.5 262 1087-1476 23-297 (389)
61 PF13414 TPR_11: TPR repeat; P 98.2 2.6E-06 5.7E-11 75.8 6.8 67 1030-1101 2-69 (69)
62 KOG1126 DNA-binding cell divis 98.2 5.8E-06 1.3E-10 101.9 11.2 138 1008-1172 472-613 (638)
63 PRK15359 type III secretion sy 98.2 1.6E-05 3.4E-10 82.0 12.2 95 1034-1142 27-125 (144)
64 TIGR02552 LcrH_SycD type III s 98.2 1.9E-05 4.1E-10 77.8 11.7 104 1025-1142 11-118 (135)
65 PRK14720 transcript cleavage f 98.1 6.2E-05 1.4E-09 97.3 18.9 274 1099-1476 26-308 (906)
66 KOG4162 Predicted calmodulin-b 98.1 0.00017 3.6E-09 90.7 21.5 306 1032-1373 436-775 (799)
67 cd05804 StaR_like StaR_like; a 98.1 0.0005 1.1E-08 78.1 21.9 127 1031-1178 43-176 (355)
68 KOG1156 N-terminal acetyltrans 98.0 0.00083 1.8E-08 83.6 24.9 113 1050-1178 21-137 (700)
69 cd00189 TPR Tetratricopeptide 98.0 3.8E-05 8.2E-10 65.6 9.7 93 1033-1138 2-98 (100)
70 KOG1126 DNA-binding cell divis 98.0 0.00018 3.9E-09 89.3 19.1 262 1049-1397 332-615 (638)
71 KOG1915 Cell cycle control pro 98.0 0.0086 1.9E-07 73.0 32.0 466 1058-1671 61-552 (677)
72 cd05804 StaR_like StaR_like; a 98.0 0.00097 2.1E-08 75.7 23.0 273 1028-1377 3-289 (355)
73 PRK15179 Vi polysaccharide bio 98.0 7.8E-05 1.7E-09 94.7 15.4 115 1048-1178 98-216 (694)
74 PLN03088 SGT1, suppressor of 98.0 6E-05 1.3E-09 88.5 13.1 85 1049-1142 15-103 (356)
75 KOG0624 dsRNA-activated protei 97.9 0.00012 2.6E-09 85.7 14.6 315 1028-1399 69-418 (504)
76 KOG2047 mRNA splicing factor [ 97.9 0.02 4.4E-07 71.8 33.9 579 1024-1683 53-718 (835)
77 PLN02789 farnesyltranstransfer 97.9 0.00029 6.3E-09 82.3 17.6 115 1050-1178 51-170 (320)
78 KOG2376 Signal recognition par 97.9 0.0013 2.7E-08 81.4 23.4 317 1047-1387 121-496 (652)
79 KOG1127 TPR repeat-containing 97.9 0.0004 8.6E-09 89.1 19.5 310 1032-1375 563-907 (1238)
80 KOG1173 Anaphase-promoting com 97.9 0.00068 1.5E-08 83.3 20.6 348 1070-1467 141-531 (611)
81 KOG0553 TPR repeat-containing 97.9 4E-05 8.6E-10 88.4 8.8 100 1033-1142 76-182 (304)
82 COG3071 HemY Uncharacterized e 97.8 0.0095 2.1E-07 71.4 28.0 309 1029-1455 70-390 (400)
83 KOG2376 Signal recognition par 97.8 0.0016 3.4E-08 80.6 22.2 401 1052-1506 95-542 (652)
84 PF12569 NARP1: NMDA receptor- 97.8 0.00089 1.9E-08 82.9 20.5 362 1150-1671 4-391 (517)
85 PF13432 TPR_16: Tetratricopep 97.8 3.7E-05 8.1E-10 68.0 6.2 63 1036-1103 2-64 (65)
86 KOG1155 Anaphase-promoting com 97.8 0.0002 4.3E-09 86.4 13.9 142 1050-1210 344-489 (559)
87 KOG1070 rRNA processing protei 97.8 0.00049 1.1E-08 90.4 17.0 247 1057-1383 1445-1705(1710)
88 KOG4162 Predicted calmodulin-b 97.7 0.017 3.7E-07 73.6 29.2 390 1009-1459 327-787 (799)
89 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00019 4.2E-09 68.0 9.8 97 1032-1142 3-109 (119)
90 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.00024 5.2E-09 85.3 12.5 109 1050-1177 183-295 (395)
91 COG4235 Cytochrome c biogenesi 97.6 0.0003 6.4E-09 81.4 11.5 107 1022-1141 147-260 (287)
92 cd00189 TPR Tetratricopeptide 97.6 0.00047 1E-08 58.9 10.0 91 1072-1178 2-96 (100)
93 PF12569 NARP1: NMDA receptor- 97.6 0.0055 1.2E-07 76.2 22.8 313 1070-1455 4-334 (517)
94 PF14559 TPR_19: Tetratricopep 97.5 0.00016 3.4E-09 64.1 5.4 61 1049-1109 4-64 (68)
95 KOG1156 N-terminal acetyltrans 97.5 0.0075 1.6E-07 75.5 21.3 303 1047-1377 52-464 (700)
96 COG4235 Cytochrome c biogenesi 97.5 0.0011 2.4E-08 76.8 13.4 116 1048-1178 134-255 (287)
97 PRK10803 tol-pal system protei 97.5 0.00054 1.2E-08 78.2 10.7 99 1030-1142 141-250 (263)
98 CHL00033 ycf3 photosystem I as 97.5 0.0012 2.7E-08 68.8 12.3 106 1031-1142 35-153 (168)
99 PRK02603 photosystem I assembl 97.5 0.0013 2.8E-08 69.2 12.5 108 1029-1142 33-153 (172)
100 KOG1840 Kinesin light chain [C 97.5 0.0054 1.2E-07 76.0 19.6 246 1146-1457 195-481 (508)
101 KOG1155 Anaphase-promoting com 97.5 0.017 3.8E-07 70.4 22.9 293 1048-1456 176-496 (559)
102 PLN02789 farnesyltranstransfer 97.4 0.0017 3.7E-08 76.1 13.9 127 1023-1162 134-267 (320)
103 COG3063 PilF Tfp pilus assembl 97.4 0.0015 3.2E-08 73.9 12.6 158 1023-1206 61-226 (250)
104 PF09976 TPR_21: Tetratricopep 97.3 0.0015 3.2E-08 67.1 10.8 115 1296-1453 26-145 (145)
105 KOG0550 Molecular chaperone (D 97.3 0.0029 6.3E-08 76.0 14.6 290 1048-1469 61-364 (486)
106 PRK15179 Vi polysaccharide bio 97.3 0.0015 3.3E-08 83.3 13.2 176 1296-1498 67-268 (694)
107 PRK11906 transcriptional regul 97.3 0.004 8.8E-08 75.9 15.4 130 1032-1177 252-399 (458)
108 KOG1125 TPR repeat-containing 97.3 0.0019 4.2E-08 79.7 12.8 253 1050-1375 299-565 (579)
109 KOG1174 Anaphase-promoting com 97.3 0.014 2.9E-07 70.5 19.1 330 1068-1467 159-510 (564)
110 PF12895 Apc3: Anaphase-promot 97.3 0.00029 6.3E-09 65.8 4.4 76 1049-1133 2-83 (84)
111 KOG2003 TPR repeat-containing 97.2 0.01 2.2E-07 71.7 17.6 276 1030-1362 418-704 (840)
112 COG4783 Putative Zn-dependent 97.2 0.0021 4.5E-08 78.3 12.1 132 1032-1186 307-442 (484)
113 KOG1840 Kinesin light chain [C 97.2 0.0054 1.2E-07 76.1 15.6 189 1037-1263 205-421 (508)
114 TIGR02795 tol_pal_ybgF tol-pal 97.2 0.0031 6.8E-08 59.9 10.5 96 1070-1178 2-104 (119)
115 PF13371 TPR_9: Tetratricopept 97.2 0.00061 1.3E-08 61.2 5.2 56 1050-1105 9-64 (73)
116 KOG1127 TPR repeat-containing 97.2 0.011 2.5E-07 76.5 17.8 134 1036-1173 3-143 (1238)
117 KOG2003 TPR repeat-containing 97.1 0.0033 7.1E-08 75.7 11.7 113 1049-1177 571-687 (840)
118 PLN03088 SGT1, suppressor of 97.1 0.0015 3.2E-08 77.1 9.0 79 1023-1106 28-106 (356)
119 PF09976 TPR_21: Tetratricopep 97.1 0.0069 1.5E-07 62.2 12.6 109 1049-1174 24-142 (145)
120 PRK15363 pathogenicity island 97.0 0.0053 1.1E-07 66.1 11.4 104 1059-1178 23-131 (157)
121 PRK10803 tol-pal system protei 97.0 0.0044 9.6E-08 71.0 11.5 97 1069-1178 141-245 (263)
122 PF09295 ChAPs: ChAPs (Chs5p-A 97.0 0.0029 6.3E-08 76.3 10.4 93 1032-1137 201-297 (395)
123 KOG0128 RNA-binding protein SA 96.9 0.11 2.4E-06 67.0 23.2 336 1028-1397 144-538 (881)
124 KOG1174 Anaphase-promoting com 96.9 0.022 4.8E-07 68.8 16.3 271 1050-1349 212-506 (564)
125 PLN03098 LPA1 LOW PSII ACCUMUL 96.9 0.0017 3.8E-08 78.9 7.4 75 1025-1104 69-146 (453)
126 KOG1125 TPR repeat-containing 96.9 0.036 7.9E-07 69.0 18.5 232 1074-1375 289-521 (579)
127 PF14938 SNAP: Soluble NSF att 96.9 0.0024 5.2E-08 72.6 8.2 144 1048-1203 54-212 (282)
128 PRK10153 DNA-binding transcrip 96.9 0.014 3E-07 72.7 14.9 114 1048-1178 354-481 (517)
129 PRK10866 outer membrane biogen 96.9 0.021 4.6E-07 64.5 15.0 143 1030-1178 31-203 (243)
130 KOG1173 Anaphase-promoting com 96.8 0.2 4.3E-06 62.8 23.7 269 1050-1365 258-535 (611)
131 PRK02603 photosystem I assembl 96.8 0.0092 2E-07 62.8 10.8 84 1066-1165 31-121 (172)
132 PF05843 Suf: Suppressor of fo 96.8 0.014 3.1E-07 66.9 12.9 121 1049-1178 14-135 (280)
133 PF12895 Apc3: Anaphase-promot 96.7 0.0042 9.1E-08 58.1 6.4 75 1084-1175 3-83 (84)
134 KOG0548 Molecular co-chaperone 96.7 0.21 4.5E-06 62.2 22.2 86 1048-1142 14-103 (539)
135 PRK11906 transcriptional regul 96.6 0.0066 1.4E-07 74.2 9.3 95 1050-1160 352-453 (458)
136 PF05843 Suf: Suppressor of fo 96.6 0.0073 1.6E-07 69.2 8.8 140 1286-1468 6-150 (280)
137 PRK15363 pathogenicity island 96.6 0.012 2.7E-07 63.4 9.9 92 1030-1134 34-129 (157)
138 PF13414 TPR_11: TPR repeat; P 96.5 0.0057 1.2E-07 54.6 6.0 63 1068-1137 1-67 (69)
139 KOG1258 mRNA processing protei 96.5 2.1 4.7E-05 54.3 29.8 378 1032-1477 80-490 (577)
140 PF04733 Coatomer_E: Coatomer 96.4 0.026 5.7E-07 65.5 11.8 225 1123-1377 16-261 (290)
141 PRK04841 transcriptional regul 96.3 0.8 1.7E-05 59.4 26.1 319 1050-1462 423-767 (903)
142 PF13428 TPR_14: Tetratricopep 96.3 0.0063 1.4E-07 51.4 4.9 42 1032-1078 2-43 (44)
143 CHL00033 ycf3 photosystem I as 96.3 0.027 5.8E-07 59.0 10.6 107 1052-1174 15-137 (168)
144 KOG3785 Uncharacterized conser 96.3 0.048 1E-06 65.0 13.5 129 1023-1178 50-179 (557)
145 KOG1070 rRNA processing protei 96.3 0.16 3.4E-06 68.4 19.2 229 1090-1396 1444-1693(1710)
146 PF14938 SNAP: Soluble NSF att 96.2 0.056 1.2E-06 61.7 13.0 154 1051-1214 89-262 (282)
147 PF13525 YfiO: Outer membrane 96.1 0.054 1.2E-06 59.2 12.1 142 1031-1178 5-169 (203)
148 PF13432 TPR_16: Tetratricopep 96.1 0.021 4.6E-07 50.6 7.4 59 1104-1178 1-59 (65)
149 PRK10866 outer membrane biogen 96.0 0.17 3.7E-06 57.4 15.6 129 1032-1178 70-240 (243)
150 COG5010 TadD Flp pilus assembl 95.8 0.067 1.5E-06 61.6 11.5 108 1050-1173 114-225 (257)
151 PF13431 TPR_17: Tetratricopep 95.7 0.008 1.7E-07 49.1 2.8 33 1058-1090 1-33 (34)
152 PF13525 YfiO: Outer membrane 95.7 0.11 2.3E-06 56.9 12.2 127 1025-1169 36-197 (203)
153 COG5010 TadD Flp pilus assembl 95.7 0.15 3.1E-06 59.0 13.6 138 1300-1484 52-189 (257)
154 KOG1128 Uncharacterized conser 95.7 0.036 7.9E-07 70.4 9.5 195 1153-1377 401-612 (777)
155 PF14559 TPR_19: Tetratricopep 95.7 0.029 6.3E-07 49.8 6.4 48 1123-1178 6-53 (68)
156 PRK15331 chaperone protein Sic 95.5 0.046 1E-06 59.5 8.4 102 1059-1176 26-131 (165)
157 KOG2047 mRNA splicing factor [ 95.4 3.3 7.2E-05 53.2 24.3 361 1063-1470 20-433 (835)
158 KOG2300 Uncharacterized conser 95.3 3.7 7.9E-05 51.5 23.6 367 1052-1457 63-516 (629)
159 KOG1129 TPR repeat-containing 95.1 0.33 7.1E-06 58.0 13.9 229 1106-1458 229-461 (478)
160 PF13428 TPR_14: Tetratricopep 95.0 0.035 7.7E-07 46.9 4.5 42 1070-1111 1-42 (44)
161 PLN03098 LPA1 LOW PSII ACCUMUL 95.0 0.049 1.1E-06 66.9 7.3 65 1064-1136 69-140 (453)
162 PF12688 TPR_5: Tetratrico pep 94.7 0.21 4.5E-06 51.7 10.0 60 1071-1138 2-68 (120)
163 PF07719 TPR_2: Tetratricopept 94.7 0.039 8.5E-07 43.0 3.6 34 1070-1103 1-34 (34)
164 PF04733 Coatomer_E: Coatomer 94.7 0.058 1.3E-06 62.7 6.5 110 1049-1177 115-228 (290)
165 COG4783 Putative Zn-dependent 94.6 0.87 1.9E-05 56.6 16.3 131 1061-1211 297-432 (484)
166 PRK10153 DNA-binding transcrip 94.6 0.39 8.5E-06 60.2 13.9 133 1024-1175 369-510 (517)
167 COG4785 NlpI Lipoprotein NlpI, 94.6 0.15 3.2E-06 58.2 9.1 122 1048-1171 111-258 (297)
168 KOG3785 Uncharacterized conser 94.5 0.81 1.8E-05 55.2 15.3 241 1103-1449 60-308 (557)
169 PF13371 TPR_9: Tetratricopept 94.5 0.1 2.2E-06 47.0 6.4 58 1076-1142 1-62 (73)
170 KOG0553 TPR repeat-containing 94.4 0.044 9.6E-07 64.2 4.9 59 1047-1105 126-184 (304)
171 KOG1128 Uncharacterized conser 94.4 0.2 4.2E-06 64.2 10.6 131 1038-1184 487-621 (777)
172 KOG0548 Molecular co-chaperone 94.4 0.24 5.2E-06 61.7 11.0 87 1047-1142 369-459 (539)
173 COG0457 NrfG FOG: TPR repeat [ 94.3 0.86 1.9E-05 43.7 12.3 116 1048-1178 107-230 (291)
174 PF10345 Cohesin_load: Cohesin 93.9 15 0.00032 47.2 25.6 133 1029-1178 57-207 (608)
175 KOG1914 mRNA cleavage and poly 93.9 9.1 0.0002 48.8 22.7 361 1060-1492 10-461 (656)
176 PF00515 TPR_1: Tetratricopept 93.8 0.055 1.2E-06 42.7 2.9 34 1070-1103 1-34 (34)
177 PRK04841 transcriptional regul 93.7 1.9 4E-05 56.2 17.8 120 1049-1178 465-601 (903)
178 KOG4642 Chaperone-dependent E3 93.6 0.13 2.9E-06 59.1 6.4 81 1048-1136 22-106 (284)
179 KOG0543 FKBP-type peptidyl-pro 93.6 0.32 7E-06 59.1 9.8 139 1218-1386 212-356 (397)
180 PF12688 TPR_5: Tetratrico pep 93.5 0.73 1.6E-05 47.8 11.0 78 1049-1134 14-101 (120)
181 KOG3060 Uncharacterized conser 93.0 1.9 4.1E-05 50.5 14.3 182 1246-1459 26-224 (289)
182 COG1729 Uncharacterized protei 93.0 0.59 1.3E-05 54.4 10.5 93 1073-1178 144-243 (262)
183 KOG3617 WD40 and TPR repeat-co 92.9 8.5 0.00018 50.8 20.9 209 1034-1243 815-1064(1416)
184 PRK15331 chaperone protein Sic 92.8 0.47 1E-05 52.0 8.8 92 1032-1136 38-133 (165)
185 PF13181 TPR_8: Tetratricopept 92.6 0.11 2.3E-06 40.9 2.8 34 1070-1103 1-34 (34)
186 COG0457 NrfG FOG: TPR repeat [ 92.2 2.3 4.9E-05 40.9 11.6 118 1048-1178 71-195 (291)
187 KOG0550 Molecular chaperone (D 92.0 0.65 1.4E-05 56.9 9.4 275 1011-1327 63-368 (486)
188 smart00386 HAT HAT (Half-A-TPR 91.9 0.16 3.5E-06 38.7 2.9 27 1644-1670 6-32 (33)
189 KOG1258 mRNA processing protei 91.5 13 0.00029 47.6 20.1 340 1296-1675 94-491 (577)
190 KOG3617 WD40 and TPR repeat-co 91.4 23 0.00049 47.2 21.9 362 1042-1452 733-1171(1416)
191 KOG3060 Uncharacterized conser 91.3 6.6 0.00014 46.2 16.0 140 1296-1459 27-187 (289)
192 PF06552 TOM20_plant: Plant sp 91.2 0.27 5.8E-06 54.6 4.8 83 1022-1104 16-114 (186)
193 PF07719 TPR_2: Tetratricopept 91.1 0.36 7.8E-06 37.6 4.2 30 1428-1459 5-34 (34)
194 PF13424 TPR_12: Tetratricopep 91.0 0.29 6.3E-06 44.8 4.2 50 1050-1099 19-75 (78)
195 KOG3824 Huntingtin interacting 91.0 0.38 8.3E-06 57.0 6.0 69 1032-1105 117-185 (472)
196 PF08424 NRDE-2: NRDE-2, neces 90.7 1.3 2.9E-05 52.2 10.2 173 1241-1457 9-185 (321)
197 PF13431 TPR_17: Tetratricopep 90.6 0.23 5.1E-06 40.7 2.8 33 1337-1373 2-34 (34)
198 PF00515 TPR_1: Tetratricopept 90.4 0.37 7.9E-06 38.1 3.7 31 1427-1459 4-34 (34)
199 PF13181 TPR_8: Tetratricopept 90.0 0.48 1E-05 37.3 4.1 31 1427-1459 4-34 (34)
200 KOG0543 FKBP-type peptidyl-pro 89.8 1 2.2E-05 55.0 8.3 86 1047-1136 268-354 (397)
201 PF03704 BTAD: Bacterial trans 89.7 1 2.3E-05 46.0 7.4 51 1048-1098 74-124 (146)
202 KOG0376 Serine-threonine phosp 89.7 0.71 1.5E-05 57.3 7.1 102 1047-1160 15-116 (476)
203 KOG3081 Vesicle coat complex C 88.8 6.7 0.00014 46.4 13.5 218 1123-1371 23-260 (299)
204 PF13424 TPR_12: Tetratricopep 88.3 0.92 2E-05 41.6 5.2 62 1106-1176 11-72 (78)
205 PF10300 DUF3808: Protein of u 87.5 3.8 8.3E-05 51.0 11.5 115 1048-1178 245-375 (468)
206 KOG1914 mRNA cleavage and poly 87.3 45 0.00097 43.0 19.9 85 1296-1383 416-503 (656)
207 KOG2396 HAT (Half-A-TPR) repea 87.3 1.6 3.4E-05 54.7 7.8 81 1029-1114 103-184 (568)
208 KOG1129 TPR repeat-containing 87.3 2.3 5E-05 51.2 8.9 130 1029-1181 256-389 (478)
209 COG2976 Uncharacterized protei 86.9 5 0.00011 45.6 10.7 133 1304-1459 38-192 (207)
210 COG5107 RNA14 Pre-mRNA 3'-end 86.4 16 0.00036 45.8 15.4 203 1243-1474 34-314 (660)
211 KOG4555 TPR repeat-containing 86.2 2.9 6.2E-05 45.2 8.0 67 1048-1114 55-129 (175)
212 PF03704 BTAD: Bacterial trans 85.6 6.1 0.00013 40.5 10.0 99 1050-1178 20-124 (146)
213 KOG4234 TPR repeat-containing 85.5 3 6.4E-05 47.7 8.1 85 1048-1142 107-201 (271)
214 COG5191 Uncharacterized conser 84.6 2.3 4.9E-05 51.0 7.0 84 1028-1116 104-188 (435)
215 KOG0128 RNA-binding protein SA 84.1 81 0.0018 42.4 20.6 78 1283-1365 310-393 (881)
216 COG1729 Uncharacterized protei 83.8 3.6 7.9E-05 48.2 8.2 93 1048-1142 153-248 (262)
217 smart00386 HAT HAT (Half-A-TPR 83.3 1.9 4.2E-05 32.7 4.0 29 1051-1079 2-30 (33)
218 COG4105 ComL DNA uptake lipopr 82.4 72 0.0016 37.8 17.7 190 1097-1349 29-238 (254)
219 KOG2053 Mitochondrial inherita 82.3 1.8E+02 0.0038 39.8 22.7 55 1048-1103 89-143 (932)
220 KOG4648 Uncharacterized conser 82.2 1.2 2.7E-05 53.5 3.7 57 1048-1105 109-165 (536)
221 PF13281 DUF4071: Domain of un 81.8 18 0.0004 44.5 13.4 186 1278-1474 138-354 (374)
222 PF10300 DUF3808: Protein of u 81.4 3.5 7.5E-05 51.4 7.4 102 1296-1398 248-372 (468)
223 KOG1492 C3H1-type Zn-finger pr 81.1 0.6 1.3E-05 52.8 0.7 33 866-898 250-283 (377)
224 KOG2053 Mitochondrial inherita 81.1 20 0.00043 48.0 13.8 114 1047-1178 20-141 (932)
225 COG3118 Thioredoxin domain-con 80.9 4.4 9.6E-05 48.3 7.6 119 1048-1178 146-264 (304)
226 PF08631 SPO22: Meiosis protei 80.3 55 0.0012 38.0 16.0 93 1246-1345 50-152 (278)
227 KOG4648 Uncharacterized conser 79.3 2.7 5.9E-05 50.8 5.3 106 1220-1361 103-208 (536)
228 PF04910 Tcf25: Transcriptiona 79.1 5.5 0.00012 48.3 7.8 130 1123-1264 9-150 (360)
229 COG3071 HemY Uncharacterized e 78.0 1.5E+02 0.0032 37.3 18.9 250 1039-1342 121-389 (400)
230 PF10345 Cohesin_load: Cohesin 77.0 2.4E+02 0.0052 36.7 23.2 161 1069-1263 58-234 (608)
231 PF08631 SPO22: Meiosis protei 76.5 1.6E+02 0.0035 34.4 18.9 26 1350-1376 245-270 (278)
232 KOG1130 Predicted G-alpha GTPa 76.0 11 0.00023 46.9 8.9 218 1049-1317 108-375 (639)
233 KOG3616 Selective LIM binding 76.0 9.3 0.0002 49.8 8.6 185 1335-1546 464-684 (1636)
234 PF11207 DUF2989: Protein of u 76.0 27 0.00059 39.9 11.5 128 1023-1169 56-197 (203)
235 PF06552 TOM20_plant: Plant sp 75.8 14 0.00031 41.6 9.1 110 1052-1170 7-133 (186)
236 KOG2610 Uncharacterized conser 75.7 7.7 0.00017 47.1 7.5 93 1048-1149 187-287 (491)
237 KOG2396 HAT (Half-A-TPR) repea 75.7 10 0.00022 48.0 8.7 75 1609-1684 479-558 (568)
238 KOG1586 Protein required for f 75.4 1.9E+02 0.004 34.6 18.4 121 1247-1377 129-258 (288)
239 PF02259 FAT: FAT domain; Int 74.5 1.1E+02 0.0023 35.4 16.2 185 1049-1264 101-304 (352)
240 PF04184 ST7: ST7 protein; In 73.9 14 0.00031 46.8 9.4 110 1053-1177 185-322 (539)
241 smart00028 TPR Tetratricopepti 73.8 3.7 7.9E-05 29.0 2.8 32 1071-1102 2-33 (34)
242 smart00028 TPR Tetratricopepti 72.4 6.3 0.00014 27.8 3.8 29 1428-1458 5-33 (34)
243 COG5107 RNA14 Pre-mRNA 3'-end 71.1 2.7E+02 0.0058 36.0 18.8 310 1022-1377 100-491 (660)
244 PF14561 TPR_20: Tetratricopep 69.1 9.1 0.0002 38.0 5.3 47 1055-1101 7-53 (90)
245 KOG2796 Uncharacterized conser 68.4 69 0.0015 38.5 12.7 167 1020-1217 155-338 (366)
246 KOG1586 Protein required for f 67.9 72 0.0016 37.9 12.6 178 1032-1213 55-260 (288)
247 PF13174 TPR_6: Tetratricopept 66.9 4.7 0.0001 31.1 2.3 29 1073-1101 3-31 (33)
248 KOG1550 Extracellular protein 66.5 2.1E+02 0.0045 36.9 17.6 131 1026-1171 239-385 (552)
249 PF13176 TPR_7: Tetratricopept 66.0 7 0.00015 32.1 3.2 28 1428-1457 3-30 (36)
250 PF13174 TPR_6: Tetratricopept 65.3 8.3 0.00018 29.7 3.4 28 1151-1178 1-28 (33)
251 KOG1308 Hsp70-interacting prot 63.2 3.4 7.3E-05 50.1 1.2 60 1046-1105 124-183 (377)
252 COG5191 Uncharacterized conser 62.9 7.4 0.00016 46.9 3.8 62 1298-1363 124-187 (435)
253 KOG3081 Vesicle coat complex C 62.6 67 0.0015 38.6 11.2 124 1032-1177 108-234 (299)
254 PF13512 TPR_18: Tetratricopep 62.5 42 0.00092 36.5 9.0 66 1106-1186 16-81 (142)
255 PF13512 TPR_18: Tetratricopep 62.5 35 0.00077 37.1 8.4 58 1048-1105 22-82 (142)
256 COG4105 ComL DNA uptake lipopr 62.5 1.2E+02 0.0025 36.2 13.1 127 1032-1177 72-230 (254)
257 COG4700 Uncharacterized protei 61.4 61 0.0013 37.4 10.2 144 1318-1487 61-218 (251)
258 PF10602 RPN7: 26S proteasome 61.3 28 0.0006 38.4 7.6 60 1106-1178 42-101 (177)
259 KOG1941 Acetylcholine receptor 60.1 22 0.00048 43.8 7.1 167 1008-1206 54-245 (518)
260 PRK10941 hypothetical protein; 58.1 23 0.00049 41.8 6.7 58 1048-1105 193-250 (269)
261 KOG4340 Uncharacterized conser 57.5 2.8E+02 0.0061 34.2 15.1 284 1050-1387 24-349 (459)
262 COG0790 FOG: TPR repeat, SEL1 57.3 1.7E+02 0.0037 33.5 13.3 128 1032-1173 74-214 (292)
263 PF09986 DUF2225: Uncharacteri 55.5 57 0.0012 37.2 9.0 70 1106-1178 124-193 (214)
264 PF02259 FAT: FAT domain; Int 54.3 71 0.0015 36.9 9.8 155 1311-1474 142-304 (352)
265 PF14561 TPR_20: Tetratricopep 53.3 51 0.0011 32.9 7.3 44 1087-1138 5-52 (90)
266 PF13281 DUF4071: Domain of un 52.7 1.3E+02 0.0027 37.6 11.8 127 1047-1178 193-333 (374)
267 COG2976 Uncharacterized protei 52.3 1.1E+02 0.0023 35.4 10.4 116 1089-1251 71-193 (207)
268 KOG3824 Huntingtin interacting 51.9 39 0.00085 41.1 7.2 78 1296-1383 131-209 (472)
269 KOG3364 Membrane protein invol 51.2 52 0.0011 36.1 7.4 76 1105-1194 37-113 (149)
270 KOG1941 Acetylcholine receptor 50.6 71 0.0015 39.8 9.1 115 1049-1173 135-269 (518)
271 PF12862 Apc5: Anaphase-promot 49.6 19 0.00041 35.5 3.6 57 1049-1105 11-76 (94)
272 smart00101 14_3_3 14-3-3 homol 49.3 82 0.0018 37.0 9.2 167 1294-1492 14-198 (244)
273 smart00299 CLH Clathrin heavy 48.8 1.2E+02 0.0026 31.2 9.4 44 1050-1094 21-64 (140)
274 KOG4234 TPR repeat-containing 48.8 76 0.0016 37.0 8.5 69 1039-1107 135-205 (271)
275 KOG2063 Vacuolar assembly/sort 47.9 7.6E+02 0.016 34.3 18.5 233 1073-1349 507-781 (877)
276 PF11817 Foie-gras_1: Foie gra 47.5 48 0.001 38.1 7.0 63 1104-1176 182-244 (247)
277 COG4700 Uncharacterized protei 47.1 2.3E+02 0.0049 33.1 11.7 133 1086-1235 72-214 (251)
278 PF11207 DUF2989: Protein of u 45.5 46 0.00099 38.2 6.3 70 1013-1088 115-196 (203)
279 PF12854 PPR_1: PPR repeat 45.4 29 0.00062 28.6 3.5 26 1151-1176 8-33 (34)
280 PF09670 Cas_Cas02710: CRISPR- 44.6 1.7E+02 0.0037 36.1 11.4 131 1032-1178 132-269 (379)
281 PF04190 DUF410: Protein of un 44.0 2.4E+02 0.0052 33.1 11.9 159 1123-1310 5-170 (260)
282 KOG2034 Vacuolar sorting prote 42.0 3.2E+02 0.0069 37.5 13.6 52 1106-1176 364-415 (911)
283 KOG4642 Chaperone-dependent E3 42.0 30 0.00065 40.9 4.2 65 1331-1399 27-104 (284)
284 COG4455 ImpE Protein of avirul 41.3 34 0.00074 40.0 4.5 44 1123-1174 16-59 (273)
285 COG3118 Thioredoxin domain-con 40.6 1.1E+02 0.0025 37.0 8.7 91 1281-1376 168-260 (304)
286 KOG0545 Aryl-hydrocarbon recep 40.2 70 0.0015 38.2 6.8 79 1023-1102 212-296 (329)
287 KOG0529 Protein geranylgeranyl 39.5 85 0.0019 39.4 7.7 57 1051-1107 90-148 (421)
288 COG2912 Uncharacterized conser 39.0 44 0.00094 39.8 5.0 56 1050-1105 195-250 (269)
289 KOG1308 Hsp70-interacting prot 38.7 19 0.00042 44.0 2.2 115 1247-1377 90-207 (377)
290 PF13176 TPR_7: Tetratricopept 38.5 28 0.00061 28.6 2.5 23 1073-1095 2-24 (36)
291 PF09797 NatB_MDM20: N-acetylt 38.5 2.7E+02 0.0059 33.7 11.6 90 1044-1134 191-285 (365)
292 COG3629 DnrI DNA-binding trans 38.3 74 0.0016 38.1 6.8 57 1106-1178 159-215 (280)
293 KOG2796 Uncharacterized conser 37.7 4.2E+02 0.0091 32.4 12.4 97 1245-1349 209-321 (366)
294 PF01535 PPR: PPR repeat; Int 35.6 42 0.00091 25.4 2.9 26 1153-1178 3-28 (31)
295 KOG4340 Uncharacterized conser 35.1 7.8E+02 0.017 30.7 14.1 110 1048-1178 156-269 (459)
296 TIGR00756 PPR pentatricopeptid 33.3 63 0.0014 24.6 3.6 26 1153-1178 3-28 (35)
297 PF09986 DUF2225: Uncharacteri 32.4 85 0.0018 35.9 5.9 73 1032-1104 119-199 (214)
298 COG4785 NlpI Lipoprotein NlpI, 31.9 78 0.0017 37.3 5.4 59 1047-1105 76-134 (297)
299 PF13374 TPR_10: Tetratricopep 31.7 54 0.0012 26.2 3.1 28 1072-1099 4-31 (42)
300 KOG4147 Uncharacterized conser 30.7 35 0.00076 35.9 2.2 42 35-83 45-86 (127)
301 KOG2422 Uncharacterized conser 30.7 1.4E+02 0.0031 39.1 7.8 137 1080-1264 248-389 (665)
302 PF13041 PPR_2: PPR repeat fam 30.5 99 0.0021 26.7 4.7 33 1152-1187 5-37 (50)
303 KOG4555 TPR repeat-containing 30.5 3.4E+02 0.0073 30.3 9.4 80 1296-1375 58-138 (175)
304 PF04781 DUF627: Protein of un 30.1 1.8E+02 0.0039 30.9 7.2 54 1050-1103 10-77 (111)
305 PF14853 Fis1_TPR_C: Fis1 C-te 29.4 96 0.0021 28.6 4.6 33 1429-1465 6-38 (53)
306 COG3629 DnrI DNA-binding trans 28.6 1.5E+02 0.0032 35.7 7.1 53 1047-1099 164-216 (280)
307 PF12862 Apc5: Anaphase-promot 28.5 3.5E+02 0.0076 26.7 8.7 81 1361-1473 7-88 (94)
308 PRK13184 pknD serine/threonine 28.5 2.3E+02 0.005 39.2 9.7 220 1319-1591 481-718 (932)
309 COG5187 RPN7 26S proteasome re 28.4 2.3E+02 0.0051 34.7 8.6 109 1118-1236 92-214 (412)
310 PF04184 ST7: ST7 protein; In 27.1 2.1E+02 0.0045 37.2 8.3 53 1324-1378 269-321 (539)
311 cd02679 MIT_spastin MIT: domai 27.1 50 0.0011 32.8 2.6 18 474-491 26-43 (79)
312 PF13812 PPR_3: Pentatricopept 26.0 92 0.002 24.1 3.4 28 1151-1178 2-29 (34)
313 PF10579 Rapsyn_N: Rapsyn N-te 25.7 1.5E+02 0.0031 30.0 5.4 58 1035-1097 10-67 (80)
314 PF13374 TPR_10: Tetratricopep 25.5 84 0.0018 25.1 3.2 26 1428-1455 6-31 (42)
315 PF14853 Fis1_TPR_C: Fis1 C-te 25.3 80 0.0017 29.1 3.3 34 1072-1105 3-36 (53)
316 cd02682 MIT_AAA_Arch MIT: doma 24.6 1.5E+02 0.0032 29.5 5.1 43 1087-1142 4-46 (75)
317 COG2909 MalT ATP-dependent tra 24.2 3.9E+02 0.0085 36.7 10.3 156 1050-1206 472-678 (894)
318 COG5159 RPN6 26S proteasome re 24.2 1.5E+03 0.032 28.3 14.9 129 1035-1177 7-152 (421)
319 KOG0530 Protein farnesyltransf 23.7 1E+03 0.022 29.3 12.5 81 1450-1546 211-291 (318)
320 PF08311 Mad3_BUB1_I: Mad3/BUB 23.5 9E+02 0.019 25.6 11.3 89 1070-1174 22-123 (126)
321 KOG1538 Uncharacterized conser 23.1 5.5E+02 0.012 34.5 10.9 94 1309-1457 741-835 (1081)
322 PF11846 DUF3366: Domain of un 22.7 3.8E+02 0.0083 29.4 8.6 63 1045-1108 120-182 (193)
323 KOG0985 Vesicle coat protein c 22.4 1.2E+03 0.026 33.4 13.8 59 1204-1275 1493-1552(1666)
324 KOG2300 Uncharacterized conser 22.1 3.4E+02 0.0074 35.3 8.7 122 1050-1186 23-159 (629)
325 KOG1464 COP9 signalosome, subu 22.0 2E+02 0.0044 34.9 6.5 96 1313-1426 22-124 (440)
326 smart00356 ZnF_C3H1 zinc finge 20.8 59 0.0013 24.8 1.4 22 876-897 4-26 (27)
327 COG4976 Predicted methyltransf 20.6 1.1E+02 0.0023 36.5 3.9 59 1047-1105 6-64 (287)
328 PF10602 RPN7: 26S proteasome 20.6 5.8E+02 0.013 28.4 9.4 94 1032-1138 37-143 (177)
329 KOG2471 TPR repeat-containing 20.1 8.8E+02 0.019 32.0 11.6 125 1049-1177 30-166 (696)
No 1
>KOG4839 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=9e-72 Score=645.91 Aligned_cols=708 Identities=15% Similarity=0.079 Sum_probs=571.1
Q ss_pred CCCCCCCCCceEEEecCCCCCCcc-ccccccccccccCCceeecCCCCCCCchhHhhhhh-HHHhhhhcccccccCCCCc
Q 000307 65 WFPSSGKNDNLVISFSDDDSGSDT-EDYRHKTAFENKSNTTRVDGSGRPPTSSAVKVKNL-QQTARNVSKAIPKKLSPSR 142 (1690)
Q Consensus 65 ~~~~~g~~~nlvi~fsdddsgs~~-e~~~~~~~~~~~~~~~~v~~n~r~~~~~~~k~~~~-q~~~r~~~~~~pkk~~~s~ 142 (1690)
.|+++|.|.++||+|||+|+|+|| ++.|.+++ . -|-.++-|.+++.++.... |...| .|.++..+..
T Consensus 14 ~~~s~~~n~~~~~NfSd~~~g~es~d~~~~~qs-n------~I~P~~~p~tF~~t~~~~p~~~d~~----~it~~~ls~~ 82 (753)
T KOG4839|consen 14 PYHSPLLNFKSYRNFSDYYRGKESLDLSSVSQS-N------MIEPDQCPCTFDLTGTCNPDDCDWQ----HITDYTLSRK 82 (753)
T ss_pred cCCCccccchhcccCCccccccccCCCcccccc-c------cCCCccCCcccccccCCCCcccccc----cccccccChh
Confidence 388999999999999999999999 55555554 2 2344888999999999999 88888 7888876666
Q ss_pred ceeeeccCCCCCCCcCCCCCCccccccccccccccccccc---------cccccccCchhhHHHHHHHHhhhhhhhhhHh
Q 000307 143 TLTTTRNHGGANSWVSRPPSVDQRSRVRNFSIKTKLGSLE---------CGDQVGLRNSKLQDLRQQIALRESELKLKAA 213 (1690)
Q Consensus 143 ~f~~tk~~~~a~s~~~~~~~~~q~s~~~~~~~~~~l~~~e---------~~~~~~~n~~k~qdlr~qialre~elklkaa 213 (1690)
+|.. .+.+. +.-.+.++...+....||.| ..+.+.+|.+|+||+. |++|+++ |++++
T Consensus 83 ~F~~-----~~~~~------~sl~~~a~t~~~~~~taSSektvsK~~~~~e~~~~~n~nk~~~~s--~~~~ss~-~~~~~ 148 (753)
T KOG4839|consen 83 LFQD-----ILSYN------LSLIGCAETSTNEEITASSEKTVSKLFGVNEDRMSMNQNKVLLVS--NINESSG-HTPPF 148 (753)
T ss_pred hhhh-----hhhcC------hhhhcCcccCCccccccchhhhHHhhhCCchhhhccchHHHHHHH--hhhhccc-CCCCc
Confidence 8873 22222 23344444445555667776 3455588999999999 9999999 99999
Q ss_pred hccccccc--------ccccccccCCCCCCCCCcccceeccccccccccCCCccccceeccCCCCCCCCCCCCccCCCcc
Q 000307 214 QQNKDLVI--------DSCENYHLGRLDQKEPDKKRLKVSGSYSHRLTTDGRQDIPATKSTVPVKEPTPERSSLQDGNKV 285 (1690)
Q Consensus 214 ~q~ke~~~--------vs~~~~~~~~l~~kepd~krlkv~~sy~~~~~~d~~q~~~~~ks~~p~k~~~~~~~~~~~r~~~ 285 (1690)
|..||.+. ++..+.|.+.+||.||.+||+++++- +.. +||....+-..+-+++|
T Consensus 149 q~~Kd~r~~K~t~~rrp~~~ssdT~~~e~se~pkk~~~~s~~-------~~~--~p~~D~~vt~~~~~~~n--------- 210 (753)
T KOG4839|consen 149 QTYKDKRKWKPTFWRRPISDSSDTSDEEQSEGPKKYAFQSEN-------QIN--VPALDTVVTPDDVRYTN--------- 210 (753)
T ss_pred cchhhhccCCCcccccccccccccchhcccccchhhhccCcc-------ccc--Cccccceeccccccccc---------
Confidence 99999987 67788899999999999999999998 333 36666666665656555
Q ss_pred cCCCCCCCccccccceeeecccCCccccCCCcccccccccCCCCCCCCccccccccccccccccccccccccCCcccccc
Q 000307 286 DRSQKDIPRSRIESEIVKWDKQNGKQVHVPPENVLSVVKDVANPNASCNQSDRDSRRVNTGPVLHNTSQLANMTSSNFLK 365 (1690)
Q Consensus 286 ~~~~k~~p~~r~~s~ivk~~~q~~~~~~~s~~~~~~~~~~~~n~n~~~~q~d~~~~~v~~~~~~~~~~~~~~~~s~~~~k 365 (1690)
|..|++ .+..||+.|.+|.|....+ |.| +++ | .+|+.++++..|
T Consensus 211 ------------e~d~~~------------------~le~gV~~N~s~~~l~~ks--~v~-~l~-~--~eG~~SsS~~sq 254 (753)
T KOG4839|consen 211 ------------ETDDIA------------------NLEAGVLENPSHVQLWLKS--AVK-YLN-Q--NEGECSSSLDSQ 254 (753)
T ss_pred ------------chhHHH------------------hhccccccChHHHhhccch--hhh-hhh-h--hcCccchhhhcc
Confidence 333443 5678999999999999988 665 344 3 899999999999
Q ss_pred ccccccCCCCCccCCCCCCCccccccccccccccccccccccCCC--CCCCCCCc---cccccccccccCCCCccccCCC
Q 000307 366 NAERIESDPASTAAGCHPSSFLSNATREQNVMENSEYTKAISGDK--IDGPSFNN---VHQVNTASLGNFSGNGNVSGNS 440 (1690)
Q Consensus 366 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~---~~~~~~a~l~n~~g~~nv~~h~ 440 (1690)
.+..+++ +.|++..+.|+ .++..+ ...||++.+|+| +..++|++ +++.++-.+.|++|.+.++ .
T Consensus 255 gsl~ln~-----~kaaR~le~~K-iD~~~s---~~h~L~~~nGt~~v~~e~~n~~~~~lp~~~~~~~~~~p~st~~p--~ 323 (753)
T KOG4839|consen 255 GSLALNV-----LKAARALENNK-IDNPES---WCHYLRLFNGTKDVVQEMCNTAVEYLPDYQSFWTFLHPESTFEP--K 323 (753)
T ss_pred ccceeeh-----hhhhhHHhhcc-CCCccc---hhheeeccCCChhHHHHhhhhhhhcccccccchhccCCCCcCCc--c
Confidence 9988886 77888888887 553333 478999999999 88888887 8888999999999999999 9
Q ss_pred cchhhhHHhhHHHhhHHHHHHHHhhhcchhhhhHHHHHHHHHHHHHHHHhhhhHHHhHhhhhhcccccceeecCCccccc
Q 000307 441 NVDIQSLLDMEELLDKELEEAQEHRRICEIEERKALKAYRKAQRALIEANASCTKLYRQRELCSARFRSFVMDDSNLLWS 520 (1690)
Q Consensus 441 n~d~~sl~~meel~dkeleeaqe~r~~ceieer~alkayrkaqraliean~rc~~ly~kre~~sa~~~sli~~~s~l~~~ 520 (1690)
+++|.++++.|+-.||+++++|+..|..|+++|||++.|+++||+++|||+||+++|.+||+. ..+||++|+.|.||
T Consensus 324 ~~v~e~~~~~~~g~dk~~~~~~~s~~llE~~~~n~~~~~~~~~rs~~lA~lrnae~~~~r~~~---~~~Li~rd~~l~wp 400 (753)
T KOG4839|consen 324 DYVCERMLEFLMGADKQETSNILSFQLLEALLFNVQLHIFTGRRSSALAILRNAEKSANRGIV---AEYLITRDRCLAWP 400 (753)
T ss_pred hhhHhhhhhhhhccchhhhHHHHHHHHhhhchhhhhhhhhhhhhhHHHHHHHhhHHHhhhchh---hhhheehhhhhccc
Confidence 999999999999999999999999999999999999999999999999999999999999954 89999999999999
Q ss_pred cccccccCcccccCCCCCCccccc-cC---CCCcccCCCcCCCCCCCCCCCcccCCCCCCCCcccccCCCCCCCCCCCCC
Q 000307 521 SGQHETLGNEFDLSKHVSGNMHLA-PT---STHQMQSGYVGYNQGGYDSSMQCINGDLQNFSHEHENGQNLGSEPCSEQD 596 (1690)
Q Consensus 521 s~~~~~~~~g~~~~~~~~~~~~~~-p~---~~~~~~~~~~~~n~~g~~s~~~~~~~~~~~~~~~h~~g~nlg~~~cs~~~ 596 (1690)
-+.| --+|++-++- ++++ |+ ++|..+.+|++. .++.+..-|+|+|. |..+
T Consensus 401 ~~~p--ts~~~~~Lps----v~~a~~sn~~~sh~~n~E~vv~-----------------~~~~~~~v~~np~~---s~~g 454 (753)
T KOG4839|consen 401 AYIP--TSIEFNILPS----VKFADPSNDNPSHIVNTESVVM-----------------PWQAVQDVKTNPDL---SAVG 454 (753)
T ss_pred ccCC--cchhhcccCC----CcccccccCCcccccccceecc-----------------CCchhhhhccCCch---hhcc
Confidence 5532 2566655544 2233 44 899999999976 45556668999996 8899
Q ss_pred CCccCcCccCccccccCCCCCCcccCCCcchhhhhccCcccccccchhhhhhhHhhhhccccccccccccccccCCCchH
Q 000307 597 ASTSELLPRKSKNALNGISPQSNELMVSADEEEEACQLDLESVQPNFEYQQKDQIAEGRQISTDYRHNNKLSAVSSQDPL 676 (1690)
Q Consensus 597 astse~~~~~~~~~~~~~~~~s~~~~~~~de~~~~~~~~he~~~~~~~~~~~~~~~~~r~~~~~~~~n~~~s~~~~qd~l 676 (1690)
||||..+|+.++.++.++++| +..+ .|.++++||+++
T Consensus 455 as~s~a~t~~s~~te~rLeap-----~l~~--te~iav~heEHp------------------------------------ 491 (753)
T KOG4839|consen 455 ASASKACTDESLATEERLEAP-----LLLY--TEMIAVHHEEHP------------------------------------ 491 (753)
T ss_pred ccccccCCCcchhHHHHHhcc-----ccCc--cccccchhhhhh------------------------------------
Confidence 999999999999999999999 4444 788999998522
Q ss_pred HHHHhhhHHHHHHhccccccCCCCCCCCcCCccccccccccccccccccCCCcCCCccccccccCCCCCCccccccCCcc
Q 000307 677 LLEATLRSELFARLGMRTFSKDSGSCFNVEPSVEQRADNDIGSDKMQMSNGSVPSSGEQSQQHDIGGTDKPERRIQEAPF 756 (1690)
Q Consensus 677 llea~lrs~lf~r~g~r~~~~~~~~~~~~e~~~e~g~e~~~g~~~~q~~~g~~~~~~~~~~~~dl~~n~~~e~~~~~~~~ 756 (1690)
|.+|+.+|+|||++..+..+ .|++.|+.+.+++| .|.+.+|+.- |=|-+ ++ |...++..+.++++
T Consensus 492 ---a~~~~~~~d~l~~l~Es~~g-~c~~~etlV~~~~e--~~~~~~~R~k--v~L~~-----~e--Gk~n~q~~p~e~~~ 556 (753)
T KOG4839|consen 492 ---AERYEAAMDLLKSLLESCPG-NCQLLETLVALYLE--TNQHDKARAK--VWLTA-----FE--GKKNPQNAPVEYHM 556 (753)
T ss_pred ---HHHHHHHHHHHHHHHhcCCc-cchhHHHHHHHHhh--hcchhhhhhH--HHHHh-----hh--ccCCccCCcccchh
Confidence 89999999999999999988 99999999999998 8888888772 11222 23 55577777778777
Q ss_pred ccccchhhccCccccccccCCCCCCCCcccccccccccchhhhhhhhhhhhhhhhhhcccccCCcccCCCccccchhhhh
Q 000307 757 QIQDKCLVEKGLLEFHSTYHSKGNKFPTTMNHSTSVLLSPPILRGAFGHLKSELCIALSNQSGNQHNHGRNFEIEEVACV 836 (1690)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~a~~h~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (1690)
.. ..|++|.. +.++|+.- .+.+++++.|.||++..|.|+ | +|++.+| +.++-++. |-
T Consensus 557 ~~---~sI~ens~---------~~d~~s~r-ilss~s~~~Pgf~~t~~~dkv--p-~l~~~~g------P~yi~~~~-~y 613 (753)
T KOG4839|consen 557 CK---FSILENSG---------DNDLPSLR-ILSSASFFKPGFEKTNNLDKV--P-YLLNIPG------PIYIPSRL-CY 613 (753)
T ss_pred HH---HHHHhccc---------cccchhhh-hhhhhhhcCCcccccchhhhc--c-hhhcCCC------chhhhhhh-cc
Confidence 66 66777765 55666543 578899999999999999999 6 7889977 44444322 22
Q ss_pred ccccccccceeccCCCCccccccccccccccccCCCCCCCcceeecccc-cccCCCCcchhhhcccccc--cccccCCCC
Q 000307 837 NSDKTQACYLIANSKPDIVKGYVGKEMGSYTCNLAIDPLWPLCMYELRG-KCNNDECPWQHVKYFADRN--KNLHDDSDS 913 (1690)
Q Consensus 837 ~sd~~~~~~~~~~~~~~~~~~~~~~~~~S~t~s~~idp~~~lC~fel~G-~CNd~~C~wQH~~d~~~~~--q~~~d~s~~ 913 (1690)
. +..+.+++. +|.+ ..++.-+|+..+|||+|+||+||++| .||+|+|.|||++|+..++ +..|+
T Consensus 614 ~--~r~~~~f~e------~Vpy-~~~i~~y~~~lk~~p~~~~c~YE~~ggrCn~d~c~w~hf~df~~~g~~~~~~~---- 680 (753)
T KOG4839|consen 614 G--NRDDDMFNE------QVPY-LWLIYCYCHPLKSSPKETVCAYEAAGGRCNIDQCIWMHFLDFANNGRAAGSRN---- 680 (753)
T ss_pred c--chhhHHHhh------hhhh-HhhhheecccccCCcchhHHHHHhccCccCchhhhHHHHHHhhcccchhhhcC----
Confidence 1 566777755 5666 44566666667999999999999997 9999999999999999997 44444
Q ss_pred CCCCCCCCcccccccccccccccccccCCCccccccccccchhhhhhhhhhhccCccccccccccccccccCC
Q 000307 914 AGCQIGSTIPQEHCNVGTKLSKGHDILTPPTYIVGLDILKADSYQYQSVIARRHGLCWQKCLSVSLAISSIYP 986 (1690)
Q Consensus 914 ~~c~~~s~~~e~~~~~~~k~~k~~~~l~~pty~v~~d~m~~Dq~a~k~~r~~rp~q~wqK~~s~s~a~s~~~q 986 (1690)
..-..++.-++++++.. |.+...++++.|||.+..|.|++|.+.|.+|.+-++++-|.|+++.+.|.+.+..
T Consensus 681 ~~~r~~~~td~v~~~s~-k~~~~ldivfs~td~~s~~~~~vdf~~~~~v~~~~H~~~w~~~~s~~pa~s~s~~ 752 (753)
T KOG4839|consen 681 KVQRFKFFTDLVNRCSV-KVPARLDIVFSSTDYWSYEFHRVDFFYLSCVPKTQHSKTWERFCSVMPANSGSAL 752 (753)
T ss_pred chhhhcccchhhhhccc-ccccccccccccccccccccceeeEEEEeeeeHHHHhHHHHHHHhhccccccccc
Confidence 33444455566655554 6888999999999999999999999999999999999999999999999887653
No 2
>KOG4839 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.1e-43 Score=412.97 Aligned_cols=564 Identities=19% Similarity=0.237 Sum_probs=446.0
Q ss_pred cccccccccCCCCCCCcceeecccccccCCCCcchhhhcccccccccccC-C---CCCCCCCCCCccccccccccccccc
Q 000307 861 KEMGSYTCNLAIDPLWPLCMYELRGKCNNDECPWQHVKYFADRNKNLHDD-S---DSAGCQIGSTIPQEHCNVGTKLSKG 936 (1690)
Q Consensus 861 ~~~~S~t~s~~idp~~~lC~fel~G~CNd~~C~wQH~~d~~~~~q~~~d~-s---~~~~c~~~s~~~e~~~~~~~k~~k~ 936 (1690)
++.+++++|++|.|.+++|.|+++|+||+++|.|||..|++|++.+|+|+ + +++||.+.++-+++.+++ +|+
T Consensus 38 ~d~~~~~qsn~I~P~~~p~tF~~t~~~~p~~~d~~~it~~~ls~~~F~~~~~~~~sl~~~a~t~~~~~~taSS----ekt 113 (753)
T KOG4839|consen 38 LDLSSVSQSNMIEPDQCPCTFDLTGTCNPDDCDWQHITDYTLSRKLFQDILSYNLSLIGCAETSTNEEITASS----EKT 113 (753)
T ss_pred CCCccccccccCCCccCCcccccccCCCCcccccccccccccChhhhhhhhhcChhhhcCcccCCccccccch----hhh
Confidence 57899999999999999999999999999999999999999999999999 4 889999999999998777 899
Q ss_pred ccccCCCccccccccccchhhh-------------------hhhhhhhccCccccccccccccccccCCCCCCcccccCC
Q 000307 937 HDILTPPTYIVGLDILKADSYQ-------------------YQSVIARRHGLCWQKCLSVSLAISSIYPKDLPADLSLIG 997 (1690)
Q Consensus 937 ~~~l~~pty~v~~d~m~~Dq~a-------------------~k~~r~~rp~q~wqK~~s~s~a~s~~~q~~~p~d~~~~~ 997 (1690)
+.|+ |+++.|+|.|||+. ||+.|+|+| ++|+|+.++++-+++.+|+.+|.+++.-+
T Consensus 114 vsK~----~~~~e~~~~~n~nk~~~~s~~~~ss~~~~~~q~~Kd~r~~K~-t~~rrp~~~ssdT~~~e~se~pkk~~~~s 188 (753)
T KOG4839|consen 114 VSKL----FGVNEDRMSMNQNKVLLVSNINESSGHTPPFQTYKDKRKWKP-TFWRRPISDSSDTSDEEQSEGPKKYAFQS 188 (753)
T ss_pred HHhh----hCCchhhhccchHHHHHHHhhhhcccCCCCccchhhhccCCC-cccccccccccccchhcccccchhhhccC
Confidence 9999 99999999999998 999999999 79999999999999999999999997777
Q ss_pred CCcceec--CCc--cccccccccchhhhhhhhhchhhh----HHHHHHHHHHhcccc-CchhhHHH----HHHHH--HHH
Q 000307 998 DGRIECI--GSW--NRQSSFFRSRNGVLNKLKQVELSN----EQCVEMALLILNQDA-NKLEGMKK----ALSLL--SRA 1062 (1690)
Q Consensus 998 d~ri~~~--~~~--~~~~rYF~~~~d~in~Le~~~~d~----qlWl~lAl~~Lnq~~-n~~g~yDA----ALdLL--srA 1062 (1690)
+..|.++ |++ +++++| .+++|++.+||++|..+ |||++.|+++|++++ +.+...++ |+++| .|+
T Consensus 189 ~~~~~~p~~D~~vt~~~~~~-~ne~d~~~~le~gV~~N~s~~~l~~ks~v~~l~~~eG~~SsS~~sqgsl~ln~~kaaR~ 267 (753)
T KOG4839|consen 189 ENQINVPALDTVVTPDDVRY-TNETDDIANLEAGVLENPSHVQLWLKSAVKYLNQNEGECSSSLDSQGSLALNVLKAARA 267 (753)
T ss_pred cccccCccccceeccccccc-ccchhHHHhhccccccChHHHhhccchhhhhhhhhcCccchhhhccccceeehhhhhhH
Confidence 7766666 665 999999 89999999999999887 999999999999988 77788888 99999 999
Q ss_pred HHhCC-CCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCC
Q 000307 1063 LEADP-TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD 1141 (1690)
Q Consensus 1063 LEINP-tSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pD 1141 (1690)
||.+. ++++.|++|+.++. |+....++|+..|+++.| .|.=||.|.-.++++..+.++++..+++++...... .
T Consensus 268 le~~KiD~~~s~~h~L~~~n--Gt~~v~~e~~n~~~~~lp-~~~~~~~~~~p~st~~p~~~v~e~~~~~~~g~dk~~--~ 342 (753)
T KOG4839|consen 268 LENNKIDNPESWCHYLRLFN--GTKDVVQEMCNTAVEYLP-DYQSFWTFLHPESTFEPKDYVCERMLEFLMGADKQE--T 342 (753)
T ss_pred HhhccCCCccchhheeeccC--CChhHHHHhhhhhhhccc-ccccchhccCCCCcCCcchhhHhhhhhhhhccchhh--h
Confidence 99999 99999999999976 788888999999999996 788899999999999999999999999997766654 2
Q ss_pred cchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccchhHHHHH-HHhhcccc
Q 000307 1142 EMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY-LVIYRKLP 1220 (1690)
Q Consensus 1142 r~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iY-dl~YrvLP 1220 (1690)
....|++++|.++.-+++-.++|+-..+++ |.++|.+..+. .|+ ..||-..|+|.+|..+++ .+.+-+||
T Consensus 343 ~~~~s~~llE~~~~n~~~~~~~~~rs~~lA----~lrnae~~~~r-~~~----~~~Li~rd~~l~wp~~~pts~~~~~Lp 413 (753)
T KOG4839|consen 343 SNILSFQLLEALLFNVQLHIFTGRRSSALA----ILRNAEKSANR-GIV----AEYLITRDRCLAWPAYIPTSIEFNILP 413 (753)
T ss_pred HHHHHHHHhhhchhhhhhhhhhhhhhHHHH----HHHhhHHHhhh-chh----hhhheehhhhhcccccCCcchhhcccC
Confidence 346899999999999999999998888888 66766777775 333 789999999999999999 99999999
Q ss_pred H-HHHhhcc------chhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHHH--HHHHHH
Q 000307 1221 D-AVLQLLE------CEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAV--NHIWCM 1291 (1690)
Q Consensus 1221 G-d~y~qne------~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tKL--N~IRq~ 1291 (1690)
. ++++..+ ..-|-+-.+|+.++.++.+|+ ..++...|.+.+. +++++-+ .+++.+..+ ++|.-.
T Consensus 414 sv~~a~~sn~~~sh~~n~E~vv~~~~~~~~v~~np~-~s~~gas~s~a~t----~~s~~te--~rLeap~l~~te~iav~ 486 (753)
T KOG4839|consen 414 SVKFADPSNDNPSHIVNTESVVMPWQAVQDVKTNPD-LSAVGASASKACT----DESLATE--ERLEAPLLLYTEMIAVH 486 (753)
T ss_pred CCcccccccCCcccccccceeccCCchhhhhccCCc-hhhccccccccCC----CcchhHH--HHHhccccCccccccch
Confidence 9 8888877 355778899999999999999 5555555444443 4554444 333333222 222211
Q ss_pred HH---hcchHHHHHHHHHHHHhCCCcchh--HHHHHHHhhccCCCccH-HHHHHHHH--hCCCCCc--hhHHHHHHHHHH
Q 000307 1292 AV---LNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSS-VGFEEALI--KWPKGVP--GIQCIWNQYVEY 1361 (1690)
Q Consensus 1292 I~---lEdse~al~LfdklLe~~P~d~eL--~L~AayL~~k~m~e~Ai-~vfe~aL~--~~PkNa~--g~qcaW~QLiq~ 1361 (1690)
-. .+.-++++.+|..+++.+|-.|.+ .|++.|++... -..++ .+|.++++ ..|.++| +++|.+
T Consensus 487 heEHpa~~~~~~~d~l~~l~Es~~g~c~~~etlV~~~~e~~~-~~~~R~kv~L~~~eGk~n~q~~p~e~~~~~~------ 559 (753)
T KOG4839|consen 487 HEEHPAERYEAAMDLLKSLLESCPGNCQLLETLVALYLETNQ-HDKARAKVWLTAFEGKKNPQNAPVEYHMCKF------ 559 (753)
T ss_pred hhhhhHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHhhhcc-hhhhhhHHHHHhhhccCCccCCcccchhHHH------
Confidence 11 336788999999999999999999 99999998655 45566 59999999 8899988 999999
Q ss_pred HHhcCChhHHHHHHHHHHHHHhhhcc---cccccchhhccc---CCCCCCC---CCCCCCcccccccccchhhhhHHHHH
Q 000307 1362 ALQNGRHDFAAELMDRWFHSVWKVQY---SQVEISDPLVAD---MSHSSPE---STSTSDPEFSVSNRNQMDVMFGYLNL 1432 (1690)
Q Consensus 1362 Al~~e~~d~ai~L~~~ff~gia~~Q~---~~deALD~lr~g---~s~i~~e---s~s~~vSDfy~~~~~Q~d~~fa~LGD 1432 (1690)
-|.++.-+--.+-.+ .++.+-.-+ ..-.-+|-+... .+++..- .-++..-|.+ ..|+ .|++.
T Consensus 560 sI~ens~~~d~~s~r--ilss~s~~~Pgf~~t~~~dkvp~l~~~~gP~yi~~~~~y~~r~~~~f---~e~V----py~~~ 630 (753)
T KOG4839|consen 560 SILENSGDNDLPSLR--ILSSASFFKPGFEKTNNLDKVPYLLNIPGPIYIPSRLCYGNRDDDMF---NEQV----PYLWL 630 (753)
T ss_pred HHHhccccccchhhh--hhhhhhhcCCcccccchhhhcchhhcCCCchhhhhhhcccchhhHHH---hhhh----hhHhh
Confidence 443333322222222 122222222 111112222211 1111100 1112233444 4555 77887
Q ss_pred --HHHHhhhcChHHHHHHHHHHHhhccCCcHHHHHHHHHHHHh
Q 000307 1433 --SLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLL 1473 (1690)
Q Consensus 1433 --~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLS 1473 (1690)
||..-|+-+..|.+-|||.+.+-- ++ ..-.|..|..|-.
T Consensus 631 i~~y~~~lk~~p~~~~c~YE~~ggrC-n~-d~c~w~hf~df~~ 671 (753)
T KOG4839|consen 631 IYCYCHPLKSSPKETVCAYEAAGGRC-NI-DQCIWMHFLDFAN 671 (753)
T ss_pred hheecccccCCcchhHHHHHhccCcc-Cc-hhhhHHHHHHhhc
Confidence 677788999999999999999722 22 1345777777754
No 3
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.90 E-value=2.1e-20 Score=223.37 Aligned_cols=401 Identities=14% Similarity=0.026 Sum_probs=296.2
Q ss_pred hhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----
Q 000307 1030 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---- 1105 (1690)
Q Consensus 1030 d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~---- 1105 (1690)
+.+..+..|..++++ |+++.|+..|+++++++|.++++|+.++.+|...++-.+|..+|++|+++.|++..
T Consensus 21 ~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 95 (899)
T TIGR02917 21 SPESLIEAAKSYLQK-----NKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPL 95 (899)
T ss_pred CHHHHHHHHHHHHHc-----CChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHH
Confidence 446678888888877 78999999999999999999999999999999999999999999999999998755
Q ss_pred HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCC
Q 000307 1106 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND 1185 (1690)
Q Consensus 1106 Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~s 1185 (1690)
++..|..++ .|++|+..+.+.....++.. .+++..+..+|...|++++|+..+.++.. .....
T Consensus 96 ~a~~~~~~g--------~~~~a~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~ 158 (899)
T TIGR02917 96 LARAYLLQG--------KFQQVLDELPGKTLLDDEGA-------AELLALRGLAYLGLGQLELAQKSYEQALA--IDPRS 158 (899)
T ss_pred HHHHHHHCC--------CHHHHHHhhcccccCCchhh-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC
Confidence 788999999 99999999976653332334 67889999999999999999999998875 33344
Q ss_pred cccccHHHHHHHhccCCccch--hHHH---HH--HHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHH
Q 000307 1186 RHSLFLSDILTCLTISDKLIF--WVCC---VY--LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMA 1258 (1690)
Q Consensus 1186 E~~lSLsKi~~YLt~sDkc~A--wLc~---iY--dl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA 1258 (1690)
. ...+.....|+..++-..| ++-. .. ......+.|.++...|...+|... +.++++.+|++..+++.+|
T Consensus 159 ~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~---~~~a~~~~p~~~~~~~~~~ 234 (899)
T TIGR02917 159 L-YAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAA---YRKAIALRPNNPAVLLALA 234 (899)
T ss_pred h-hhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHH---HHHHHhhCCCCHHHHHHHH
Confidence 3 5556667778888876666 2222 22 445566789999999999999999 9999999999999999997
Q ss_pred HHHHHhhcCCcchhhhhcc----cchhHHHHHHHHHHHH--hcchHHHHHHHHHHHHhCCCcchh-HHHHHHHhhccCCC
Q 000307 1259 VNSVELYSNGESLEKETNL----RSAHCFAVNHIWCMAV--LNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGD 1331 (1690)
Q Consensus 1259 ~dYY~~~~ndEsla~~~n~----k~d~~tKLN~IRq~I~--lEdse~al~LfdklLe~~P~d~eL-~L~AayL~~k~m~e 1331 (1690)
.-++. .|+-+.+...-. ..+.......++.++. ..+.+.|+.+|.++++..|..... .+.+..+...+-.+
T Consensus 235 ~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~ 312 (899)
T TIGR02917 235 TILIE--AGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLE 312 (899)
T ss_pred HHHHH--cCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHH
Confidence 44444 454443333200 0011111122333333 458999999999999999998766 34443333344367
Q ss_pred ccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHH------------HHHHHhhhcc-cccccchhhcc
Q 000307 1332 LSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR------------WFHSVWKVQY-SQVEISDPLVA 1398 (1690)
Q Consensus 1332 ~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~------------ff~gia~~Q~-~~deALD~lr~ 1398 (1690)
.|+..|..++...|++.. ++..++...+..++++.++.++++ +..+..+.+. ..++|++.+.+
T Consensus 313 ~A~~~~~~~~~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 388 (899)
T TIGR02917 313 QAYQYLNQILKYAPNSHQ----ARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAK 388 (899)
T ss_pred HHHHHHHHHHHhCCCChH----HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 899999999999999988 888899999999999999999877 3344444444 88889988886
Q ss_pred cCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCC
Q 000307 1399 DMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESE 1478 (1690)
Q Consensus 1399 g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLSle~~d 1478 (1690)
.....+. ..+++ -.++.++.. .|+.++|...|+++++..|.. ..+....+.-. ....+
T Consensus 389 ~~~~~~~------~~~~~-----------~~l~~~~~~--~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~-~~~~~ 446 (899)
T TIGR02917 389 ATELDPE------NAAAR-----------TQLGISKLS--QGDPSEAIADLETAAQLDPEL--GRADLLLILSY-LRSGQ 446 (899)
T ss_pred HHhcCCC------CHHHH-----------HHHHHHHHh--CCChHHHHHHHHHHHhhCCcc--hhhHHHHHHHH-HhcCC
Confidence 5432211 12333 567778888 899999999999999988876 33333333222 22334
Q ss_pred CCcccc
Q 000307 1479 PKEGAP 1484 (1690)
Q Consensus 1479 L~KAEq 1484 (1690)
.++|.+
T Consensus 447 ~~~A~~ 452 (899)
T TIGR02917 447 FDKALA 452 (899)
T ss_pred HHHHHH
Confidence 445444
No 4
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.89 E-value=3.9e-19 Score=212.55 Aligned_cols=411 Identities=13% Similarity=0.009 Sum_probs=294.4
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHHH
Q 000307 1050 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1125 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYd 1125 (1690)
|+++.|+..|.++++.+|+...+++.++.+|+.++...++...|.++++..|.+.. ++.+|+..+ .++
T Consensus 275 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g--------~~~ 346 (899)
T TIGR02917 275 KNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLG--------RVD 346 (899)
T ss_pred cCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCC--------CHH
Confidence 67899999999999999999889999999999999999999999999999988765 677888888 889
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccc
Q 000307 1126 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLI 1205 (1690)
Q Consensus 1126 rAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~ 1205 (1690)
+|+..|..+.... +.. .+++..+..+|...|++++|+..+.+... ..-.+. .........|+..++...
T Consensus 347 ~A~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~~~~l~~~~~~~~~~~~ 415 (899)
T TIGR02917 347 EAIATLSPALGLD-PDD-------PAALSLLGEAYLALGDFEKAAEYLAKATE--LDPENA-AARTQLGISKLSQGDPSE 415 (899)
T ss_pred HHHHHHHHHHhcC-CCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCH-HHHHHHHHHHHhCCChHH
Confidence 9999998887766 665 67888899999999999999998888765 222232 333444556677777665
Q ss_pred h--hHHHHH-----HHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhhccc
Q 000307 1206 F--WVCCVY-----LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLR 1278 (1690)
Q Consensus 1206 A--wLc~iY-----dl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~n~k 1278 (1690)
| .+.... ........+..|...|..+++..+ +....+..|+++.....+| ..|.. .|+-..+...-.+
T Consensus 416 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~---~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~~A~~~~~~ 490 (899)
T TIGR02917 416 AIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAA---AKKLEKKQPDNASLHNLLG-AIYLG-KGDLAKAREAFEK 490 (899)
T ss_pred HHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHH---HHHHHHhCCCCcHHHHHHH-HHHHh-CCCHHHHHHHHHH
Confidence 5 221111 223334556778888889999888 8888888888888888886 44443 4544433332100
Q ss_pred ------chhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCcchh--HHHHHHHhhccCCCccHHHHHHHHHhCCCCCch
Q 000307 1279 ------SAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPG 1350 (1690)
Q Consensus 1279 ------~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d~eL--~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g 1350 (1690)
.....-.++.+.+....+.+.++.+|+++++.+|.+.+. .+...|.. .+..++|+..|++++...|++..
T Consensus 491 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~- 568 (899)
T TIGR02917 491 ALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLR-TGNEEEAVAWLEKAAELNPQEIE- 568 (899)
T ss_pred HHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCccchh-
Confidence 011112243344444558899999999999999999888 44444444 44478899999999999999988
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHH------------HHHHHhhhcc-cccccchhhcccCCCCCCCCCCCCCccccc
Q 000307 1351 IQCIWNQYVEYALQNGRHDFAAELMDR------------WFHSVWKVQY-SQVEISDPLVADMSHSSPESTSTSDPEFSV 1417 (1690)
Q Consensus 1351 ~qcaW~QLiq~Al~~e~~d~ai~L~~~------------ff~gia~~Q~-~~deALD~lr~g~s~i~~es~s~~vSDfy~ 1417 (1690)
.|..++......+++++++.+++. +..+..+... ..++|++.+.+.....+. ....+
T Consensus 569 ---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~- 638 (899)
T TIGR02917 569 ---PALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD------SALAL- 638 (899)
T ss_pred ---HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChHHH-
Confidence 899999999999999999999887 2334444443 788888888765432211 11223
Q ss_pred ccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHH-----
Q 000307 1418 SNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLL----- 1492 (1690)
Q Consensus 1418 ~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLSle~~dL~KAEqMS~~~KtV----- 1492 (1690)
-.++.+|++ .|++++|...|+++++..|++ ..++...+..+...+ +.++|..+-. ++.
T Consensus 639 ----------~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~-~~~~A~~~~~--~~~~~~~~ 701 (899)
T TIGR02917 639 ----------LLLADAYAV--MKNYAKAITSLKRALELKPDN--TEAQIGLAQLLLAAK-RTESAKKIAK--SLQKQHPK 701 (899)
T ss_pred ----------HHHHHHHHH--cCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcC-CHHHHHHHHH--HHHhhCcC
Confidence 678899999 999999999999999999998 778888887776544 4666655433 222
Q ss_pred --HHHHhhhcccccccc--cchhhh
Q 000307 1493 --NSYLDRARSLPYLKL--LPRQFI 1513 (1690)
Q Consensus 1493 --sTYLDTAWILf~~~~--lARiYI 1513 (1690)
..|..-+++++..+. +|..+.
T Consensus 702 ~~~~~~~~~~~~~~~g~~~~A~~~~ 726 (899)
T TIGR02917 702 AALGFELEGDLYLRQKDYPAAIQAY 726 (899)
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 122222677777777 565555
No 5
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.78 E-value=1.5e-15 Score=197.35 Aligned_cols=589 Identities=10% Similarity=0.011 Sum_probs=368.2
Q ss_pred cccccccccch--hhhh----h-hhhchhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHH-------
Q 000307 1008 NRQSSFFRSRN--GVLN----K-LKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILW------- 1073 (1690)
Q Consensus 1008 ~~~~rYF~~~~--d~in----~-Le~~~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaW------- 1073 (1690)
-+++||..... |... + +.-.|.+.+++..++...+.+ |++++|...|.++++++|+++.++
T Consensus 32 l~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~-----g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~ 106 (1157)
T PRK11447 32 LEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQ-----GDSDGAQKLLDRLSQLAPDSNAYRSSRTTML 106 (1157)
T ss_pred HHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 36667766333 2222 2 223345668888887777666 788999999999999999999986
Q ss_pred ---------HHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcch
Q 000307 1074 ---------ITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMH 1144 (1690)
Q Consensus 1074 ---------yeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~ 1144 (1690)
..++.++...++.++|...|+++++.+|++..++..|...-... .-.+++|+..|+++...+ |+.
T Consensus 107 ~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~---~g~~~~A~~~L~~ll~~~-P~~-- 180 (1157)
T PRK11447 107 LSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKL---PAQRPEAINQLQRLNADY-PGN-- 180 (1157)
T ss_pred hcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhC---CccHHHHHHHHHHHHHhC-CCC--
Confidence 55667899999999999999999999999988766565532111 126889999999999998 888
Q ss_pred hhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCC-c------------ccccHHHHHHHhccCCccc----h-
Q 000307 1145 ASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND-R------------HSLFLSDILTCLTISDKLI----F- 1206 (1690)
Q Consensus 1145 ~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~s-E------------~~lSLsKi~~YLt~sDkc~----A- 1206 (1690)
.++.+.++.+|...|++++||..+.++......... . ..-.+..+..|+..-.... |
T Consensus 181 -----~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~ 255 (1157)
T PRK11447 181 -----TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAAR 255 (1157)
T ss_pred -----HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHH
Confidence 788999999999999999999999988641100000 0 0001111122221111100 0
Q ss_pred -hHHH---HH-HHhhc-cccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhh-----
Q 000307 1207 -WVCC---VY-LVIYR-KLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKET----- 1275 (1690)
Q Consensus 1207 -wLc~---iY-dl~Yr-vLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~----- 1275 (1690)
-|.. .. +..|. .+.|..+...|...+|... +.++++.+|+++.++..+|.-|+. .++-+.+...
T Consensus 256 ~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~---l~~aL~~~P~~~~a~~~Lg~~~~~--~g~~~eA~~~l~~Al 330 (1157)
T PRK11447 256 SQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPE---LQQAVRANPKDSEALGALGQAYSQ--QGDRARAVAQFEKAL 330 (1157)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHH---HHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHH
Confidence 0000 00 11111 2458888999999999999 999999999999999999844544 4554444433
Q ss_pred --cccchhHHH----HH--H-------HHHHHHhcchHHHHHHHHHHHHhCCCcchh--HHHHHHHhhccCCCccHHHHH
Q 000307 1276 --NLRSAHCFA----VN--H-------IWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFE 1338 (1690)
Q Consensus 1276 --n~k~d~~tK----LN--~-------IRq~I~lEdse~al~LfdklLe~~P~d~eL--~L~AayL~~k~m~e~Ai~vfe 1338 (1690)
+++.....+ +. . -..++...+.++|+.+|+++++.+|.+... .|...|+..++ .++|+..|+
T Consensus 331 ~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~-~~eA~~~y~ 409 (1157)
T PRK11447 331 ALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKD-YAAAERYYQ 409 (1157)
T ss_pred HhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHH
Confidence 221111001 00 0 011112448999999999999999999988 44445555554 899999999
Q ss_pred HHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHHHH---------------------HHHhhh-cccccccchhh
Q 000307 1339 EALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWF---------------------HSVWKV-QYSQVEISDPL 1396 (1690)
Q Consensus 1339 ~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ff---------------------~gia~~-Q~~~deALD~l 1396 (1690)
++|.++|++.. +|..+..... .+++++|+..+..+- .+-.+. +...++|+..+
T Consensus 410 ~aL~~~p~~~~----a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~ 484 (1157)
T PRK11447 410 QALRMDPGNTN----AVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQ 484 (1157)
T ss_pred HHHHhCCCCHH----HHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999998 8877777554 558898887765411 121222 23888999988
Q ss_pred cccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCC
Q 000307 1397 VADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINE 1476 (1690)
Q Consensus 1397 r~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLSle~ 1476 (1690)
++....-+. ...++ -.|+.+|++ .|+.++|...|+++++..|.+ ...+..++.|+...+
T Consensus 485 ~~Al~~~P~------~~~~~-----------~~LA~~~~~--~G~~~~A~~~l~~al~~~P~~--~~~~~a~al~l~~~~ 543 (1157)
T PRK11447 485 RQRLALDPG------SVWLT-----------YRLAQDLRQ--AGQRSQADALMRRLAQQKPND--PEQVYAYGLYLSGSD 543 (1157)
T ss_pred HHHHHhCCC------CHHHH-----------HHHHHHHHH--cCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHhCC
Confidence 876544321 12233 568889999 999999999999999999988 677777887765433
Q ss_pred CCCCcccc-------------hhhhHHHH--HHHHhhhcccccccc--cchhhhccccchhhHHHHhhhcCCCCCChhhH
Q 000307 1477 SEPKEGAP-------------ISWQLKLL--NSYLDRARSLPYLKL--LPRQFINNIERPRLQQLIDNLLSPVSSDFSLV 1539 (1690)
Q Consensus 1477 ~dL~KAEq-------------MS~~~KtV--sTYLDTAWILf~~~~--lARiYI~~i~k~rv~~liDqaL~~~S~dsS~v 1539 (1690)
. .++|.. |......+ ..+|..|.++...++ +|...+ + ..|.+ ...
T Consensus 544 ~-~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l------------~--~~p~~---~~~ 605 (1157)
T PRK11447 544 R-DRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL------------R--QQPPS---TRI 605 (1157)
T ss_pred C-HHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH------------H--hCCCC---chH
Confidence 2 222211 11000000 123333444555554 444444 1 11211 111
Q ss_pred HHHHhhccCCCCcccccccccchhHHHHHHHhhcCcchhhHHHHHHHhhccCCCCCCCCCchhHHHHHhhhhhhhhhccC
Q 000307 1540 NLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNKDHNPNITDAVPESVLFWASSSLVSAIFHAV 1619 (1690)
Q Consensus 1540 NkALE~W~g~slLpqKI~~kKyI~dfVE~ime~~P~Ny~LALav~kll~k~~~~~~~d~~s~~~~fwA~s~l~nai~~a~ 1619 (1690)
...|-.|+ + +.++...=..+.+.+++.-|.|...-+..+.++....+ ...+..... .+...-
T Consensus 606 ~~~La~~~----~--~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~------~~eA~~~l~------~ll~~~ 667 (1157)
T PRK11447 606 DLTLADWA----Q--QRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGD------LAAARAQLA------KLPATA 667 (1157)
T ss_pred HHHHHHHH----H--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC------HHHHHHHHH------HHhccC
Confidence 12222232 1 11122334567888889999998888888887765444 111221111 111111
Q ss_pred CCCchHHHHHHHHHhhhchhHHHHHHHHHHhhhccccc------hHHHHHHHHhhhcccCChHHHHHHH
Q 000307 1620 PVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPF------SIKLWKCYYDLSKTKGDLNTIVKAA 1682 (1690)
Q Consensus 1620 pvape~vWveAa~~l~~l~~~~~i~~rfy~~AlsvyPf------S~~LW~~y~~~~k~~g~~~~ive~a 1682 (1690)
|- ...+|...|.++..+ |.-+-+..+|++|+...|= .+.+++..-.+....|..+..++.-
T Consensus 668 p~-~~~~~~~la~~~~~~-g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y 734 (1157)
T PRK11447 668 ND-SLNTQRRVALAWAAL-GDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETY 734 (1157)
T ss_pred CC-ChHHHHHHHHHHHhC-CCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 22 224566666666554 4444458899999987652 3457776677778888886655553
No 6
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.78 E-value=5.9e-16 Score=198.33 Aligned_cols=311 Identities=11% Similarity=-0.021 Sum_probs=227.4
Q ss_pred hHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHHHHH
Q 000307 1031 NEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMY 1110 (1690)
Q Consensus 1031 ~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw~mY 1110 (1690)
.+-+..+.+..........|+++.|+..|.+||+++|+++++++.++.+|+..++..+|..++++||+++|+|.++..+.
T Consensus 39 ~~~~~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L 118 (987)
T PRK09782 39 YRHFVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL 118 (987)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 33344444333333334458899999999999999999999999999999999999999999999999999999966665
Q ss_pred HhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHH--------HhhhcCHHHHHHHHHhhcccccC
Q 000307 1111 INSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQC--------FCMSGNTEKAIQRISRLLIPATG 1182 (1690)
Q Consensus 1111 INsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqL--------Y~qSGnydKAI~tL~rLEq~Al~ 1182 (1690)
-..+ .|++|+..|+++++.+ |++ .|+++.++.+ |.+.+...+||. .+++. .+
T Consensus 119 a~i~--------~~~kA~~~ye~l~~~~-P~n-------~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~--~~ 178 (987)
T PRK09782 119 AAIP--------VEVKSVTTVEELLAQQ-KAC-------DAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFA--AS 178 (987)
T ss_pred HHhc--------cChhHHHHHHHHHHhC-CCC-------hhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhC--CC
Confidence 4446 9999999999999999 999 9999999998 999999999987 66665 44
Q ss_pred CCCcccccHHHHHHHhccCCcc-ch----hHHHHH--HHhhccccHHHHhhc-cchhhhhcCCCCCcccchhhhhhHHHH
Q 000307 1183 SNDRHSLFLSDILTCLTISDKL-IF----WVCCVY--LVIYRKLPDAVLQLL-ECEKELFAIDWPPVQLEDDEKQRAIKL 1254 (1690)
Q Consensus 1183 G~sE~~lSLsKi~~YLt~sDkc-~A----wLc~iY--dl~YrvLPGd~y~qn-e~~KEAf~I~W~yvqvlkdEPdnalAL 1254 (1690)
|... -+.|.+.++|+.++|-. .. .|+..+ ...|.+.++++|+++ +. +++..+ +...++ ++.-+.
T Consensus 179 ~~~~-vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al---~~~~lk---~d~~l~ 250 (987)
T PRK09782 179 PEGK-TLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLAL---QSQGIF---TDPQSR 250 (987)
T ss_pred CCcH-HHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHH---hchhcc---cCHHHH
Confidence 5554 68999999999999944 33 677776 888999999999995 66 888888 666655 445555
Q ss_pred HHHHHHHHHhhcCCcchhhhhcccchhHHHH-------------------------------HHHHHHHH-hc------c
Q 000307 1255 IEMAVNSVELYSNGESLEKETNLRSAHCFAV-------------------------------NHIWCMAV-LN------G 1296 (1690)
Q Consensus 1255 ~smA~dYY~~~~ndEsla~~~n~k~d~~tKL-------------------------------N~IRq~I~-lE------d 1296 (1690)
..+| ++|.. .|+.+.+...=.+...|++. ++.+-.+. ++ +
T Consensus 251 ~ala-~~yi~-~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (987)
T PRK09782 251 ITYA-TALAY-RGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQ 328 (987)
T ss_pred HHHH-HHHHH-CCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccH
Confidence 5663 76776 77777776551112222111 11111110 11 2
Q ss_pred hHHHHHHHHHHHHhCCCcchhHHHHHHHhh-ccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHH
Q 000307 1297 LECSMNLLEKYIKLYPSCLELVLMKARLQK-HDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELM 1375 (1690)
Q Consensus 1297 se~al~LfdklLe~~P~d~eL~L~AayL~~-k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~ 1375 (1690)
+..+. .++...|.+.-+.+-.+++.. ++ -.++...|.......|.+.. .=.|+.-.++++|+.++|..+.
T Consensus 329 ~~~~~----~~~~~~~~~~~~~~r~~~~~~~~~-~~~~~~~~~~~y~~~~~~~~----~l~q~~~~~~~~~~~~~a~~~~ 399 (987)
T PRK09782 329 YDAAQ----KLLATLPANEMLEERYAVSVATRN-KAEALRLARLLYQQEPANLT----RLDQLTWQLMQNGQSREAADLL 399 (987)
T ss_pred HHHHH----HHhcCCCcchHHHHHHhhccccCc-hhHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcccHHHHHHHH
Confidence 23222 335555655544444444433 33 44666778888888898888 8888888999999999999999
Q ss_pred HHHHH
Q 000307 1376 DRWFH 1380 (1690)
Q Consensus 1376 ~~ff~ 1380 (1690)
+.-|.
T Consensus 400 ~~~~~ 404 (987)
T PRK09782 400 LQRYP 404 (987)
T ss_pred HHhcC
Confidence 88443
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.73 E-value=7.8e-16 Score=200.03 Aligned_cols=360 Identities=8% Similarity=-0.033 Sum_probs=251.8
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH------------------HHHHH
Q 000307 1049 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA------------------LWLMY 1110 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~------------------Lw~mY 1110 (1690)
.|++++|+..|.++|+++|+++++|+.++.+|.+++...+|.+.|++|++.+|++.. ++..|
T Consensus 282 ~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999998642 23456
Q ss_pred HhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCccccc
Q 000307 1111 INSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLF 1190 (1690)
Q Consensus 1111 INsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lS 1190 (1690)
+..+ .|++|+..|.+..+.. |+. .+.++.|.++|...|++++|+..+.+... ++..+. ...
T Consensus 362 ~~~g--------~~~eA~~~~~~Al~~~-P~~-------~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~--~~p~~~-~a~ 422 (1157)
T PRK11447 362 LKAN--------NLAQAERLYQQARQVD-NTD-------SYAVLGLGDVAMARKDYAAAERYYQQALR--MDPGNT-NAV 422 (1157)
T ss_pred HHCC--------CHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCH-HHH
Confidence 6677 8999999999988887 777 67888999999999999999999988886 443443 222
Q ss_pred HHHHHHHhccCCccch--hHHH---HH-----------HHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHH
Q 000307 1191 LSDILTCLTISDKLIF--WVCC---VY-----------LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKL 1254 (1690)
Q Consensus 1191 LsKi~~YLt~sDkc~A--wLc~---iY-----------dl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL 1254 (1690)
.....+|... +...| ++-. .. ...--...+.++...|...+|... +.+.++.+|+++.++
T Consensus 423 ~~L~~l~~~~-~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~---~~~Al~~~P~~~~~~ 498 (1157)
T PRK11447 423 RGLANLYRQQ-SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAEL---QRQRLALDPGSVWLT 498 (1157)
T ss_pred HHHHHHHHhc-CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHH---HHHHHHhCCCCHHHH
Confidence 2233344332 22333 2110 00 001112356677777788888887 788888888888877
Q ss_pred HHHHHHHHHhhcCCcchhhhh-------ccc-chhHHH------------------------------------------
Q 000307 1255 IEMAVNSVELYSNGESLEKET-------NLR-SAHCFA------------------------------------------ 1284 (1690)
Q Consensus 1255 ~smA~dYY~~~~ndEsla~~~-------n~k-~d~~tK------------------------------------------ 1284 (1690)
+.+|.-|+. .|+...+... .+. .+..+.
T Consensus 499 ~~LA~~~~~--~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~ 576 (1157)
T PRK11447 499 YRLAQDLRQ--AGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQV 576 (1157)
T ss_pred HHHHHHHHH--cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHH
Confidence 777633433 4444443332 010 000000
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCcchh-HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHH
Q 000307 1285 VNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYAL 1363 (1690)
Q Consensus 1285 LN~IRq~I~lEdse~al~LfdklLe~~P~d~eL-~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al 1363 (1690)
+.....+....+.++|+.++ +.+|.+..+ ..++..+...+..++|+..|+++++.+|+|.. +|+.++....
T Consensus 577 l~~a~~l~~~G~~~eA~~~l----~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~----a~~~la~~~~ 648 (1157)
T PRK11447 577 LETANRLRDSGKEAEAEALL----RQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNAD----ARLGLIEVDI 648 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHH----HhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHH
Confidence 01111122222555555554 468999988 55666666666699999999999999999999 9999999999
Q ss_pred hcCChhHHHHHHHH------------HHHHHhhhcc-cccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHH
Q 000307 1364 QNGRHDFAAELMDR------------WFHSVWKVQY-SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYL 1430 (1690)
Q Consensus 1364 ~~e~~d~ai~L~~~------------ff~gia~~Q~-~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~L 1430 (1690)
..+++++|++.++. +..+.++.+. ..++|+..+++.....+.+........++ --+
T Consensus 649 ~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~-----------~~~ 717 (1157)
T PRK11447 649 AQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVL-----------RDA 717 (1157)
T ss_pred HCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHH-----------HHH
Confidence 99999999999887 3345555554 88999999987655432111100111222 456
Q ss_pred HHHHHHhhhcChHHHHHHHHHHHh
Q 000307 1431 NLSLHRLLQNDWNEARLAIDAALK 1454 (1690)
Q Consensus 1431 GD~Lyq~Lqg~~~EAf~AYDkALk 1454 (1690)
+.++.. +|+.++|...|.+||.
T Consensus 718 a~~~~~--~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 718 ARFEAQ--TGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHH--cCCHHHHHHHHHHHHh
Confidence 778888 9999999999999995
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.67 E-value=1.1e-14 Score=177.40 Aligned_cols=78 Identities=15% Similarity=0.108 Sum_probs=71.3
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHH
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDA 1123 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~a 1123 (1690)
..|+|+.|+..|.+||+++|+ +.+|+.++..|..++...++.+.|.+|++++|++.. ++..|...+ .
T Consensus 139 ~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg--------~ 209 (615)
T TIGR00990 139 RNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLG--------K 209 (615)
T ss_pred HcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC--------C
Confidence 348999999999999999996 789999999999999999999999999999998866 888999999 9
Q ss_pred HHHHHHHHHHh
Q 000307 1124 YDAALSVLCRC 1134 (1690)
Q Consensus 1124 YdrAI~aLe~l 1134 (1690)
|++|+..|...
T Consensus 210 ~~eA~~~~~~~ 220 (615)
T TIGR00990 210 YADALLDLTAS 220 (615)
T ss_pred HHHHHHHHHHH
Confidence 99999888543
No 9
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.65 E-value=2.6e-14 Score=176.75 Aligned_cols=306 Identities=11% Similarity=0.021 Sum_probs=201.1
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHHH
Q 000307 1050 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1125 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYd 1125 (1690)
|++++|+..|.++++++|+++.+|+.++.+|.+++...+|.+.|++|++++|++.. ++..|...+ .++
T Consensus 90 g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g--------~~~ 161 (656)
T PRK15174 90 SQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMD--------KEL 161 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC--------ChH
Confidence 55566666666666666666666666666666666666666666666666665544 444555555 566
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccc
Q 000307 1126 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLI 1205 (1690)
Q Consensus 1126 rAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~ 1205 (1690)
+|+.+|..+.... |+. .+++..++ .|...|++++|+..+.++.. .....
T Consensus 162 eA~~~~~~~~~~~-P~~-------~~a~~~~~-~l~~~g~~~eA~~~~~~~l~--~~~~~-------------------- 210 (656)
T PRK15174 162 QAISLARTQAQEV-PPR-------GDMIATCL-SFLNKSRLPEDHDLARALLP--FFALE-------------------- 210 (656)
T ss_pred HHHHHHHHHHHhC-CCC-------HHHHHHHH-HHHHcCCHHHHHHHHHHHHh--cCCCc--------------------
Confidence 6666665554444 443 23332222 24455666666665555443 10000
Q ss_pred hhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHHH
Q 000307 1206 FWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAV 1285 (1690)
Q Consensus 1206 AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tKL 1285 (1690)
...+..+.+..+...|...+|... +.+.+..+|+.+.+++.+|.-|+. .|+-. .
T Consensus 211 -------~~~~~~~l~~~l~~~g~~~eA~~~---~~~al~~~p~~~~~~~~Lg~~l~~--~G~~~--e------------ 264 (656)
T PRK15174 211 -------RQESAGLAVDTLCAVGKYQEAIQT---GESALARGLDGAALRRSLGLAYYQ--SGRSR--E------------ 264 (656)
T ss_pred -------chhHHHHHHHHHHHCCCHHHHHHH---HHHHHhcCCCCHHHHHHHHHHHHH--cCCch--h------------
Confidence 000112346677788999999988 888999999999999888744554 33211 0
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCCCcchh-HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHh
Q 000307 1286 NHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQ 1364 (1690)
Q Consensus 1286 N~IRq~I~lEdse~al~LfdklLe~~P~d~eL-~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~ 1364 (1690)
....|+.+|+++++..|.++.+ ..++..+...+..++|+..|++++...|++.. +|..|......
T Consensus 265 ----------A~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~----a~~~La~~l~~ 330 (656)
T PRK15174 265 ----------AKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPY----VRAMYARALRQ 330 (656)
T ss_pred ----------hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHH
Confidence 0136888999999999999999 55566666666688999999999999999999 99999999999
Q ss_pred cCChhHHHHHHHHHHHHHhhhcccccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHH
Q 000307 1365 NGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNE 1444 (1690)
Q Consensus 1365 ~e~~d~ai~L~~~ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~E 1444 (1690)
.|++++|+..+++.. . ..+ . ....+ .+++.+|.+ .|+.+|
T Consensus 331 ~G~~~eA~~~l~~al--------------~--------~~P----~-~~~~~-----------~~~a~al~~--~G~~de 370 (656)
T PRK15174 331 VGQYTAASDEFVQLA--------------R--------EKG----V-TSKWN-----------RYAAAALLQ--AGKTSE 370 (656)
T ss_pred CCCHHHHHHHHHHHH--------------H--------hCc----c-chHHH-----------HHHHHHHHH--CCCHHH
Confidence 999999999875511 1 001 0 11223 456788888 899999
Q ss_pred HHHHHHHHHhhccC---CcHHHHHHHHHHHHhc
Q 000307 1445 ARLAIDAALKAAAS---EHFKHCVREHAMLLLI 1474 (1690)
Q Consensus 1445 Af~AYDkALk~np~---N~~i~cLNNYAYFLSl 1474 (1690)
|...|+++|+..|+ ..|..+...|.-++..
T Consensus 371 A~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 371 AESVFEHYIQARASHLPQSFEEGLLALDGQISA 403 (656)
T ss_pred HHHHHHHHHHhChhhchhhHHHHHHHHHHHHHh
Confidence 99999999998874 4455666667666654
No 10
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.61 E-value=1.4e-13 Score=172.62 Aligned_cols=380 Identities=8% Similarity=-0.041 Sum_probs=220.8
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHHH
Q 000307 1050 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1125 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYd 1125 (1690)
|+.+.|+.++.+|+.++|..+.+|..++.+|...+.-.+|.+.|++|++++|+|-. ++.+++..+ .++
T Consensus 29 g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g--------~~~ 100 (765)
T PRK10049 29 GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAG--------QYD 100 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--------CHH
Confidence 66788888888888888888888888888888888888888888888888888766 667777777 888
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccc
Q 000307 1126 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLI 1205 (1690)
Q Consensus 1126 rAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~ 1205 (1690)
+|+.+|.+..+.+ |+. .+ ++.+..+|..+|++++|+..+.++.. ..-.++ ..-+.....+...++...
T Consensus 101 eA~~~l~~~l~~~-P~~-------~~-~~~la~~l~~~g~~~~Al~~l~~al~--~~P~~~-~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 101 EALVKAKQLVSGA-PDK-------AN-LLALAYVYKRAGRHWDELRAMTQALP--RAPQTQ-QYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHHHHHHHHhC-CCC-------HH-HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHHHCCChHH
Confidence 8888888887777 776 66 77788888888888888888877775 222232 222222222222222222
Q ss_pred hhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCccc-ch----hhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccch
Q 000307 1206 FWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQL-ED----DEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSA 1280 (1690)
Q Consensus 1206 AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqv-lk----dEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d 1280 (1690)
| |. .+. .+..-|+ ..........+..+-+-+... .. ...+.|++.++.+...+.. + +...
T Consensus 169 A-l~-~l~-~~~~~p~-~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~---~--------p~~~ 233 (765)
T PRK10049 169 A-LG-AID-DANLTPA-EKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHD---N--------PDAT 233 (765)
T ss_pred H-HH-HHH-hCCCCHH-HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhccc---C--------Cccc
Confidence 2 00 000 0000111 000000000000000000000 00 0112333333332111110 0 1111
Q ss_pred hH---HHHHHHHHHHHhcchHHHHHHHHHHHHhCC---CcchhHHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHH
Q 000307 1281 HC---FAVNHIWCMAVLNGLECSMNLLEKYIKLYP---SCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCI 1354 (1690)
Q Consensus 1281 ~~---tKLN~IRq~I~lEdse~al~LfdklLe~~P---~d~eL~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qca 1354 (1690)
.. ..+..+..++...+.+.|+..|+++++..| ..+.+.+..+|+.+++ ++.|+..|++++...|.+..-..=.
T Consensus 234 ~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~-~e~A~~~l~~~l~~~p~~~~~~~~~ 312 (765)
T PRK10049 234 ADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQ-PEKAQSILTELFYHPETIADLSDEE 312 (765)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCC-cHHHHHHHHHHhhcCCCCCCCChHH
Confidence 11 111112222334588999999999999974 4444566667777777 9999999999999999874311124
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHH----------------------------HhhhcccccccchhhcccCCCCCCC
Q 000307 1355 WNQYVEYALQNGRHDFAAELMDRWFHS----------------------------VWKVQYSQVEISDPLVADMSHSSPE 1406 (1690)
Q Consensus 1355 W~QLiq~Al~~e~~d~ai~L~~~ff~g----------------------------ia~~Q~~~deALD~lr~g~s~i~~e 1406 (1690)
+.+|....++.+++++|+.+++..... +...+...++|++++++.....+.
T Consensus 313 ~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~- 391 (765)
T PRK10049 313 LADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG- 391 (765)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 566666678999999999997762221 111112666777777655433221
Q ss_pred CCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchh
Q 000307 1407 STSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPIS 1486 (1690)
Q Consensus 1407 s~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLSle~~dL~KAEqMS 1486 (1690)
..+.+ -.++.++-. .|+.++|...|++||+..|++ ...+-..|+ ..+...++++|+++=
T Consensus 392 -----n~~l~-----------~~lA~l~~~--~g~~~~A~~~l~~al~l~Pd~--~~l~~~~a~-~al~~~~~~~A~~~~ 450 (765)
T PRK10049 392 -----NQGLR-----------IDYASVLQA--RGWPRAAENELKKAEVLEPRN--INLEVEQAW-TALDLQEWRQMDVLT 450 (765)
T ss_pred -----CHHHH-----------HHHHHHHHh--cCCHHHHHHHHHHHHhhCCCC--hHHHHHHHH-HHHHhCCHHHHHHHH
Confidence 12222 455556666 778888888888888888877 666666666 334444566666644
Q ss_pred h
Q 000307 1487 W 1487 (1690)
Q Consensus 1487 ~ 1487 (1690)
.
T Consensus 451 ~ 451 (765)
T PRK10049 451 D 451 (765)
T ss_pred H
Confidence 3
No 11
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.60 E-value=3.7e-13 Score=168.97 Aligned_cols=358 Identities=10% Similarity=0.048 Sum_probs=259.0
Q ss_pred chhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH-
Q 000307 1027 VELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA- 1105 (1690)
Q Consensus 1027 ~~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~- 1105 (1690)
.+...+.|..+|..+.++ |++++|+.+|.++|+.+|.++.+|+.++.++...+...+|.++++++++..|++..
T Consensus 45 ~~~~a~~~~~lA~~~~~~-----g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~~ 119 (765)
T PRK10049 45 MQLPARGYAAVAVAYRNL-----KQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKANL 119 (765)
T ss_pred CCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 344556677777777766 77899999999999999999999999999999999999999999999999999865
Q ss_pred --HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCC
Q 000307 1106 --LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGS 1183 (1690)
Q Consensus 1106 --Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G 1183 (1690)
++.+|...+ .+++|+.+|++..+.. |+. .++++.++.++...|..++||..++++.. ...
T Consensus 120 ~~la~~l~~~g--------~~~~Al~~l~~al~~~-P~~-------~~~~~~la~~l~~~~~~e~Al~~l~~~~~--~p~ 181 (765)
T PRK10049 120 LALAYVYKRAG--------RHWDELRAMTQALPRA-PQT-------QQYPTEYVQALRNNRLSAPALGAIDDANL--TPA 181 (765)
T ss_pred HHHHHHHHHCC--------CHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHCCChHHHHHHHHhCCC--CHH
Confidence 778888888 9999999999999998 888 88989999999999999999998887764 100
Q ss_pred CCc---ccccHHHHHHHhccCCcc----------ch---hHHHHH---------HHhhccc-cHHHHhhccchhhhhcCC
Q 000307 1184 NDR---HSLFLSDILTCLTISDKL----------IF---WVCCVY---------LVIYRKL-PDAVLQLLECEKELFAID 1237 (1690)
Q Consensus 1184 ~sE---~~lSLsKi~~YLt~sDkc----------~A---wLc~iY---------dl~YrvL-PGd~y~qne~~KEAf~I~ 1237 (1690)
... .......++.++...... ++ .+...+ ...++.. ++.+ ...+..++|...
T Consensus 182 ~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L-l~~g~~~eA~~~- 259 (765)
T PRK10049 182 EKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL-LARDRYKDVISE- 259 (765)
T ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH-HHhhhHHHHHHH-
Confidence 000 011223444444433211 11 222111 1111111 3444 455888999998
Q ss_pred CCCcccchhh---hhhHHHHHHHHHHHHHhhcCCcchhhhhcccc----------hhHHHHHHHHHHHHhcchHHHHHHH
Q 000307 1238 WPPVQLEDDE---KQRAIKLIEMAVNSVELYSNGESLEKETNLRS----------AHCFAVNHIWCMAVLNGLECSMNLL 1304 (1690)
Q Consensus 1238 W~yvqvlkdE---PdnalAL~smA~dYY~~~~ndEsla~~~n~k~----------d~~tKLN~IRq~I~lEdse~al~Lf 1304 (1690)
|.++++.. |+.+...+ | ++|-. .++.+.+...-.++ .......+..-++..++.++|+.++
T Consensus 260 --~~~ll~~~~~~P~~a~~~l--a-~~yl~-~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l 333 (765)
T PRK10049 260 --YQRLKAEGQIIPPWAQRWV--A-SAYLK-LHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVT 333 (765)
T ss_pred --HHHhhccCCCCCHHHHHHH--H-HHHHh-cCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 88888874 66655554 3 34443 66666555541111 1122233233333366999999999
Q ss_pred HHHHHhCCCcc---------------hh-HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCh
Q 000307 1305 EKYIKLYPSCL---------------EL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRH 1368 (1690)
Q Consensus 1305 dklLe~~P~d~---------------eL-~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~ 1368 (1690)
+++++..|... ++ .+.+..+...+..++|+..|++++...|+|.. +|+.++......+++
T Consensus 334 ~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~----l~~~lA~l~~~~g~~ 409 (765)
T PRK10049 334 AHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQG----LRIDYASVLQARGWP 409 (765)
T ss_pred HHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHhcCCH
Confidence 99999988432 33 56666677777799999999999999999999 999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhcccccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHHHHH
Q 000307 1369 DFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLA 1448 (1690)
Q Consensus 1369 d~ai~L~~~ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~A 1448 (1690)
++|+.++++ |+. ..+ + ..+++ -.++..+-+ .+++++|...
T Consensus 410 ~~A~~~l~~--------------al~--------l~P----d-~~~l~-----------~~~a~~al~--~~~~~~A~~~ 449 (765)
T PRK10049 410 RAAENELKK--------------AEV--------LEP----R-NINLE-----------VEQAWTALD--LQEWRQMDVL 449 (765)
T ss_pred HHHHHHHHH--------------HHh--------hCC----C-ChHHH-----------HHHHHHHHH--hCCHHHHHHH
Confidence 999999855 222 111 0 12344 455667777 8999999999
Q ss_pred HHHHHhhccCC
Q 000307 1449 IDAALKAAASE 1459 (1690)
Q Consensus 1449 YDkALk~np~N 1459 (1690)
++++++..|++
T Consensus 450 ~~~ll~~~Pd~ 460 (765)
T PRK10049 450 TDDVVAREPQD 460 (765)
T ss_pred HHHHHHhCCCC
Confidence 99999999988
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.60 E-value=2.2e-13 Score=166.25 Aligned_cols=351 Identities=12% Similarity=-0.006 Sum_probs=194.3
Q ss_pred hHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH-----
Q 000307 1031 NEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----- 1105 (1690)
Q Consensus 1031 ~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----- 1105 (1690)
...|..+|.-++.. |+++.|+..+.++|+++|+.+.+|+.++..|..++..++|...|..+..+++.+..
T Consensus 160 ~~~~~n~a~~~~~l-----~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~ 234 (615)
T TIGR00990 160 PVYYSNRAACHNAL-----GDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQA 234 (615)
T ss_pred hHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 45677777666554 88999999999999999999999999999999999999888777666555433221
Q ss_pred -----------------------------HHHHHHhcCCCc-----------c-----------------cchHHHHHHH
Q 000307 1106 -----------------------------LWLMYINSRTPL-----------N-----------------HRLDAYDAAL 1128 (1690)
Q Consensus 1106 -----------------------------Lw~mYINsr~s~-----------d-----------------drl~aYdrAI 1128 (1690)
++.++-..+... + .....|++|+
T Consensus 235 ~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~ 314 (615)
T TIGR00990 235 VERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAA 314 (615)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHH
Confidence 111111000000 0 0112578888
Q ss_pred HHHHHhhhcC--CCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccch
Q 000307 1129 SVLCRCASAS--DGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIF 1206 (1690)
Q Consensus 1129 ~aLe~las~~--~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~A 1206 (1690)
.+|+...... .++. ...+..+..+|...|++++||..+.+... .++. .. .
T Consensus 315 ~~~~~al~~~~~~~~~-------a~a~~~lg~~~~~~g~~~eA~~~~~kal~-----l~P~-~~----~----------- 366 (615)
T TIGR00990 315 RAFEKALDLGKLGEKE-------AIALNLRGTFKCLKGKHLEALADLSKSIE-----LDPR-VT----Q----------- 366 (615)
T ss_pred HHHHHHHhcCCCChhh-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCC-cH----H-----------
Confidence 8887766543 1333 56778888888899999999988877664 2331 10 0
Q ss_pred hHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhhcc-----cchh
Q 000307 1207 WVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNL-----RSAH 1281 (1690)
Q Consensus 1207 wLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~n~-----k~d~ 1281 (1690)
.....|.++...|...+|... +.++++.+|+++.+++.+| ..|.. .|+-+.+..... ..+.
T Consensus 367 ---------~~~~la~~~~~~g~~~eA~~~---~~~al~~~p~~~~~~~~lg-~~~~~-~g~~~~A~~~~~kal~l~P~~ 432 (615)
T TIGR00990 367 ---------SYIKRASMNLELGDPDKAEED---FDKALKLNSEDPDIYYHRA-QLHFI-KGEFAQAGKDYQKSIDLDPDF 432 (615)
T ss_pred ---------HHHHHHHHHHHCCCHHHHHHH---HHHHHHhCCCCHHHHHHHH-HHHHH-cCCHHHHHHHHHHHHHcCccC
Confidence 111234555666677777776 6667777777776666665 33322 332222221100 0000
Q ss_pred HHHHHHHHHH-HHhcchHHHHHHHHHHHHhCCCcchh-HHHHHHHhhccCCCccHHHHHHHHHhCCCCCch---hHHHHH
Q 000307 1282 CFAVNHIWCM-AVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPG---IQCIWN 1356 (1690)
Q Consensus 1282 ~tKLN~IRq~-I~lEdse~al~LfdklLe~~P~d~eL-~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g---~qcaW~ 1356 (1690)
......+... ..+.+.+.|+.+|+++++..|.+.++ ..++..+...+-.++|+..|++++.++|++.+- ..-.++
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence 0000001111 11235555566666666666655555 222222222222455555566666665554430 000111
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHhhhcccccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHH
Q 000307 1357 QYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHR 1436 (1690)
Q Consensus 1357 QLiq~Al~~e~~d~ai~L~~~ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq 1436 (1690)
..+...-..+++++|+.++ .+.... .+ +.. ..+-.||.+|++
T Consensus 513 ~a~~~~~~~~~~~eA~~~~---------------------~kAl~l-~p--------~~~--------~a~~~la~~~~~ 554 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLC---------------------EKALII-DP--------ECD--------IAVATMAQLLLQ 554 (615)
T ss_pred HHHHHHHHhhhHHHHHHHH---------------------HHHHhc-CC--------CcH--------HHHHHHHHHHHH
Confidence 1111111124444444444 322111 11 100 122567889999
Q ss_pred hhhcChHHHHHHHHHHHhhccCCcHHHHHHHHHH
Q 000307 1437 LLQNDWNEARLAIDAALKAAASEHFKHCVREHAM 1470 (1690)
Q Consensus 1437 ~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAY 1470 (1690)
.|+.+||...|++|++..+.. ...++.+.|
T Consensus 555 --~g~~~eAi~~~e~A~~l~~~~--~e~~~a~~~ 584 (615)
T TIGR00990 555 --QGDVDEALKLFERAAELARTE--GELVQAISY 584 (615)
T ss_pred --ccCHHHHHHHHHHHHHHhccH--HHHHHHHHH
Confidence 999999999999999998875 444444444
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.54 E-value=7e-13 Score=164.25 Aligned_cols=270 Identities=9% Similarity=-0.022 Sum_probs=179.1
Q ss_pred hhhchhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCC
Q 000307 1024 LKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1103 (1690)
Q Consensus 1024 Le~~~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~N 1103 (1690)
++..|.+.+.|+.+|..++.. |++++|+..|.++++++|+++.+|+.++.+|...+...++..+++++++..|++
T Consensus 103 l~~~P~~~~a~~~la~~l~~~-----g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~ 177 (656)
T PRK15174 103 LAVNVCQPEDVLLVASVLLKS-----KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR 177 (656)
T ss_pred HHhCCCChHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC
Confidence 344556678888888777765 789999999999999999999999999999999999999999999999999988
Q ss_pred HHHH---HHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccc
Q 000307 1104 YALW---LMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPA 1180 (1690)
Q Consensus 1104 Y~Lw---~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~A 1180 (1690)
-..+ ..|+..+ .|++|+.+|..+......+. ......++.+|...|++++|+..+.+...
T Consensus 178 ~~a~~~~~~l~~~g--------~~~eA~~~~~~~l~~~~~~~-------~~~~~~l~~~l~~~g~~~eA~~~~~~al~-- 240 (656)
T PRK15174 178 GDMIATCLSFLNKS--------RLPEDHDLARALLPFFALER-------QESAGLAVDTLCAVGKYQEAIQTGESALA-- 240 (656)
T ss_pred HHHHHHHHHHHHcC--------CHHHHHHHHHHHHhcCCCcc-------hhHHHHHHHHHHHCCCHHHHHHHHHHHHh--
Confidence 6622 3577777 89999999988766652233 23445667889999999999998888775
Q ss_pred cCCCCcccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhh----hhcCCCCCcccchhhhhhHHHHHH
Q 000307 1181 TGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKE----LFAIDWPPVQLEDDEKQRAIKLIE 1256 (1690)
Q Consensus 1181 l~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KE----Af~I~W~yvqvlkdEPdnalAL~s 1256 (1690)
. .+. ....+..+|..|...|...+ |... +.++++.+|+++.++..
T Consensus 241 ~---~p~-------------------------~~~~~~~Lg~~l~~~G~~~eA~~~A~~~---~~~Al~l~P~~~~a~~~ 289 (656)
T PRK15174 241 R---GLD-------------------------GAALRRSLGLAYYQSGRSREAKLQAAEH---WRHALQFNSDNVRIVTL 289 (656)
T ss_pred c---CCC-------------------------CHHHHHHHHHHHHHcCCchhhHHHHHHH---HHHHHhhCCCCHHHHHH
Confidence 2 221 01122346777888887665 6778 88888889999888888
Q ss_pred HHHHHHHhhcCCcchhhhh-------cccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCcchh-HHHHHHHhhcc
Q 000307 1257 MAVNSVELYSNGESLEKET-------NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHD 1328 (1690)
Q Consensus 1257 mA~dYY~~~~ndEsla~~~-------n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d~eL-~L~AayL~~k~ 1328 (1690)
+| ..|.. .|+-+.+... ++.. ...-.++-..+....+.+.|+..|+++++..|..... ...+.-+...+
T Consensus 290 lg-~~l~~-~g~~~eA~~~l~~al~l~P~~-~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G 366 (656)
T PRK15174 290 YA-DALIR-TGQNEKAIPLLQQSLATHPDL-PYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAG 366 (656)
T ss_pred HH-HHHHH-CCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCC
Confidence 86 44433 3432222221 1110 0111121222222345555555555555555555444 22222233333
Q ss_pred CCCccHHHHHHHHHhCCCCCc
Q 000307 1329 FGDLSSVGFEEALIKWPKGVP 1349 (1690)
Q Consensus 1329 m~e~Ai~vfe~aL~~~PkNa~ 1349 (1690)
..++|+..|++++++.|++.+
T Consensus 367 ~~deA~~~l~~al~~~P~~~~ 387 (656)
T PRK15174 367 KTSEAESVFEHYIQARASHLP 387 (656)
T ss_pred CHHHHHHHHHHHHHhChhhch
Confidence 355555555555555555543
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.53 E-value=2.2e-12 Score=146.07 Aligned_cols=295 Identities=15% Similarity=0.113 Sum_probs=210.5
Q ss_pred HHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCC--------
Q 000307 1032 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS-------- 1103 (1690)
Q Consensus 1032 qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~N-------- 1103 (1690)
..+.-+++.++.+ |+++.|+..|.++++.+|.++++|+.++.+|...+...++...++++++..+..
T Consensus 36 ~~~y~~g~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 110 (389)
T PRK11788 36 SRDYFKGLNFLLN-----EQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLAL 110 (389)
T ss_pred cHHHHHHHHHHhc-----CChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 3333344444433 678999999999999999999999999999999999999999999999865332
Q ss_pred HHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCC
Q 000307 1104 YALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGS 1183 (1690)
Q Consensus 1104 Y~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G 1183 (1690)
+.|+..|...+ .|++|+.+|.++.... +.. .+++..++.+|..+|++++|+..+.++.. ...
T Consensus 111 ~~La~~~~~~g--------~~~~A~~~~~~~l~~~-~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~ 172 (389)
T PRK11788 111 QELGQDYLKAG--------LLDRAEELFLQLVDEG-DFA-------EGALQQLLEIYQQEKDWQKAIDVAERLEK--LGG 172 (389)
T ss_pred HHHHHHHHHCC--------CHHHHHHHHHHHHcCC-cch-------HHHHHHHHHHHHHhchHHHHHHHHHHHHH--hcC
Confidence 12789999999 9999999999987765 555 68899999999999999999999888774 111
Q ss_pred CCcccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHH
Q 000307 1184 NDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVE 1263 (1690)
Q Consensus 1184 ~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~ 1263 (1690)
.+. .. ....|....+..+...|..++|... +.+.++.+|+...+.+.+| ..|.
T Consensus 173 ~~~-~~----------------------~~~~~~~~la~~~~~~~~~~~A~~~---~~~al~~~p~~~~~~~~la-~~~~ 225 (389)
T PRK11788 173 DSL-RV----------------------EIAHFYCELAQQALARGDLDAARAL---LKKALAADPQCVRASILLG-DLAL 225 (389)
T ss_pred Ccc-hH----------------------HHHHHHHHHHHHHHhCCCHHHHHHH---HHHHHhHCcCCHHHHHHHH-HHHH
Confidence 111 00 0111222356667777888888777 7777777788777777775 5444
Q ss_pred hhcCCcchhhhhcccch----hH--HHH-HHHHHHHHhcchHHHHHHHHHHHHhCCCcchhHHHHHHHhhccCCCccHHH
Q 000307 1264 LYSNGESLEKETNLRSA----HC--FAV-NHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVG 1336 (1690)
Q Consensus 1264 ~~~ndEsla~~~n~k~d----~~--tKL-N~IRq~I~lEdse~al~LfdklLe~~P~d~eL~L~AayL~~k~m~e~Ai~v 1336 (1690)
. .|+...+...-.++. .. ..+ .+...+....+.+.++.+|+++++.+|....+...+..+...+..++|+..
T Consensus 226 ~-~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~ 304 (389)
T PRK11788 226 A-QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQAL 304 (389)
T ss_pred H-CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHH
Confidence 3 454444443311111 00 111 222333445689999999999999999775555555555555558899999
Q ss_pred HHHHHHhCCCCCchhHHHHHHHHHHHHh---cCChhHHHHHHHHHHHHH
Q 000307 1337 FEEALIKWPKGVPGIQCIWNQYVEYALQ---NGRHDFAAELMDRWFHSV 1382 (1690)
Q Consensus 1337 fe~aL~~~PkNa~g~qcaW~QLiq~Al~---~e~~d~ai~L~~~ff~gi 1382 (1690)
|++++...|++.. +..++..++. .++.++++.+++++..-.
T Consensus 305 l~~~l~~~P~~~~-----~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 305 LREQLRRHPSLRG-----FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred HHHHHHhCcCHHH-----HHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 9999999999876 4455555543 458889999998866543
No 15
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.45 E-value=4.2e-11 Score=152.06 Aligned_cols=383 Identities=12% Similarity=0.006 Sum_probs=248.9
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH--H--HHHHHhcCCCcccchHHH
Q 000307 1049 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--L--WLMYINSRTPLNHRLDAY 1124 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~--L--w~mYINsr~s~ddrl~aY 1124 (1690)
.|+++.|++.|.+||+++|.++.+.+.++.+|...++..+|...|++|+.-.|.+|. + +..|.+.+ .|
T Consensus 47 ~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~g--------dy 118 (822)
T PRK14574 47 AGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEK--------RW 118 (822)
T ss_pred CCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC--------CH
Confidence 488999999999999999999755559999999999999999999999955556666 4 66999999 99
Q ss_pred HHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhc---cC
Q 000307 1125 DAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLT---IS 1201 (1690)
Q Consensus 1125 drAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt---~s 1201 (1690)
++|+++|+++.+.+ |+. .++++.|+.+|...|++++|+..+.++++ .++.. ...+.+.|+. .+
T Consensus 119 d~Aiely~kaL~~d-P~n-------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~--~dp~~----~~~l~layL~~~~~~ 184 (822)
T PRK14574 119 DQALALWQSSLKKD-PTN-------PDLISGMIMTQADAGRGGVVLKQATELAE--RDPTV----QNYMTLSYLNRATDR 184 (822)
T ss_pred HHHHHHHHHHHhhC-CCC-------HHHHHHHHHHHhhcCCHHHHHHHHHHhcc--cCcch----HHHHHHHHHHHhcch
Confidence 99999999999998 998 89999999999999999999999999997 44443 3345666666 33
Q ss_pred Cccch----hHHHHH--HHhhccccHHHHhhccchhhhhcCCCCCcccc------hhhhhhHHHHHHHHHHHHHhhcC--
Q 000307 1202 DKLIF----WVCCVY--LVIYRKLPDAVLQLLECEKELFAIDWPPVQLE------DDEKQRAIKLIEMAVNSVELYSN-- 1267 (1690)
Q Consensus 1202 Dkc~A----wLc~iY--dl~YrvLPGd~y~qne~~KEAf~I~W~yvqvl------kdEPdnalAL~smA~dYY~~~~n-- 1267 (1690)
....+ .++..+ ...|-...-..+-.+|-..-|+.+-+.+..+. -.+-+.+..++..| ..... ..
T Consensus 185 ~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a-~~~~~-~~~~ 262 (822)
T PRK14574 185 NYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMA-VLPTR-SETE 262 (822)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhc-ccccc-cchh
Confidence 32211 444444 44444444455555554444444322222221 11222233333221 00000 00
Q ss_pred -----Ccchhhhh-----cccchhH----HHH--HHHHHHHHhcchHHHHHHHHHHHHhC---CCcchhHHHHHHHhhcc
Q 000307 1268 -----GESLEKET-----NLRSAHC----FAV--NHIWCMAVLNGLECSMNLLEKYIKLY---PSCLELVLMKARLQKHD 1328 (1690)
Q Consensus 1268 -----dEsla~~~-----n~k~d~~----tKL--N~IRq~I~lEdse~al~LfdklLe~~---P~d~eL~L~AayL~~k~ 1328 (1690)
|..++..+ -.+.+.. +.. -.|.-+....+...|+..++.+-... |.-+.-.+..+||....
T Consensus 263 r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~ 342 (822)
T PRK14574 263 RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRL 342 (822)
T ss_pred hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCC
Confidence 00011100 0111111 111 22222222558999999999998665 66666699999998888
Q ss_pred CCCccHHHHHHHHHhCCCCCc-hhHHH-HHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcccccccchhhcccCCCCCCC
Q 000307 1329 FGDLSSVGFEEALIKWPKGVP-GIQCI-WNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPE 1406 (1690)
Q Consensus 1329 m~e~Ai~vfe~aL~~~PkNa~-g~qca-W~QLiq~Al~~e~~d~ai~L~~~ff~gia~~Q~~~deALD~lr~g~s~i~~e 1406 (1690)
|+.|..+|++++.-.|...+ ...-. -.-|.--.++.+++++|..++..+-.. .++ -...+ .++..+
T Consensus 343 -P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~-----~p~--~~~~~-~~~~~~--- 410 (822)
T PRK14574 343 -PEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ-----TPY--QVGVY-GLPGKE--- 410 (822)
T ss_pred -cHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc-----CCc--EEecc-CCCCCC---
Confidence 99999999999998753211 11111 234566778999999999999774210 010 00001 112222
Q ss_pred CCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccc
Q 000307 1407 STSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAP 1484 (1690)
Q Consensus 1407 s~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLSle~~dL~KAEq 1484 (1690)
-+.|.. - ++...+.+....|++.+|...+|+.+..+|.| ..+++.+|-..+-.+. ...|++
T Consensus 411 ----pn~d~~--------~--~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n--~~l~~~~A~v~~~Rg~-p~~A~~ 471 (822)
T PRK14574 411 ----PNDDWI--------E--GQTLLVQSLVALNDLPTAQKKLEDLSSTAPAN--QNLRIALASIYLARDL-PRKAEQ 471 (822)
T ss_pred ----CCccHH--------H--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCC-HHHHHH
Confidence 234522 1 23334444455899999999999999999999 9999999998877664 444444
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.36 E-value=1.8e-10 Score=148.70 Aligned_cols=186 Identities=6% Similarity=-0.037 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHH
Q 000307 1298 ECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1377 (1690)
Q Consensus 1298 e~al~LfdklLe~~P~d~eL~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ 1377 (1690)
++|+..+.+++...|.+......+..+...+..++|+..|++++...|.+ + .|.++...+++.|+++.|+..+++
T Consensus 493 ~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~----a~~~la~all~~Gd~~eA~~~l~q 567 (987)
T PRK09782 493 GVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSN-E----DLLAAANTAQAAGNGAARDRWLQQ 567 (987)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-H----HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34666666666666654432222222233333666677777766654443 3 467777777778888888877765
Q ss_pred ----------HHHHHhhhc---ccccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHH
Q 000307 1378 ----------WFHSVWKVQ---YSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNE 1444 (1690)
Q Consensus 1378 ----------ff~gia~~Q---~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~E 1444 (1690)
.+..++..+ ...++|+..+++....-+ . .+.| .-+|.+|.+ .|+.+|
T Consensus 568 AL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P-----~--~~a~-----------~~LA~~l~~--lG~~de 627 (987)
T PRK09782 568 AEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAP-----S--ANAY-----------VARATIYRQ--RHNVPA 627 (987)
T ss_pred HHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-----C--HHHH-----------HHHHHHHHH--CCCHHH
Confidence 122233333 477888888876654321 1 3445 667889999 999999
Q ss_pred HHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHH------HHHHhh-hcccccccc--cchhhh
Q 000307 1445 ARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLL------NSYLDR-ARSLPYLKL--LPRQFI 1513 (1690)
Q Consensus 1445 Af~AYDkALk~np~N~~i~cLNNYAYFLSle~~dL~KAEqMS~~~KtV------sTYLDT-AWILf~~~~--lARiYI 1513 (1690)
|..+|++||..+|++ ...+++++++|...+ +.++|..+-. +.+ ..++.. ||++...++ +|..++
T Consensus 628 A~~~l~~AL~l~Pd~--~~a~~nLG~aL~~~G-~~eeAi~~l~--~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l 700 (987)
T PRK09782 628 AVSDLRAALELEPNN--SNYQAALGYALWDSG-DIAQSREMLE--RAHKGLPDDPALIRQLAYVNQRLDDMAATQHYA 700 (987)
T ss_pred HHHHHHHHHHhCCCC--HHHHHHHHHHHHHCC-CHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999 899999999988765 4666666444 555 455555 999999999 888888
No 17
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.33 E-value=1.4e-09 Score=131.95 Aligned_cols=579 Identities=19% Similarity=0.224 Sum_probs=332.1
Q ss_pred CCCccccccccccchhhhhhhhhhhccCccccccccccccccccCCCCCCccc--ccCCCCcceec---CCccccccccc
Q 000307 941 TPPTYIVGLDILKADSYQYQSVIARRHGLCWQKCLSVSLAISSIYPKDLPADL--SLIGDGRIECI---GSWNRQSSFFR 1015 (1690)
Q Consensus 941 ~~pty~v~~d~m~~Dq~a~k~~r~~rp~q~wqK~~s~s~a~s~~~q~~~p~d~--~~~~d~ri~~~---~~~~~~~rYF~ 1015 (1690)
..||++-....++--.+++||+|+--|. |...=.|+-..+-..+-... ..+-.|+=+++ |-|=+..|-+-
T Consensus 256 m~p~~~~dl~DikKaR~llKSvretnP~-----hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLhp 330 (913)
T KOG0495|consen 256 MIPTSGGDLEDIKKARLLLKSVRETNPK-----HPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLHP 330 (913)
T ss_pred cCCCccCcHHHHHHHHHHHHHHHhcCCC-----CCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcCC
Confidence 4688888888888777889999998774 44444444333322221111 11112222222 33333333333
Q ss_pred cch---hhhhhhhhchhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHH
Q 000307 1016 SRN---GVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDM 1092 (1690)
Q Consensus 1016 ~~~---d~in~Le~~~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~em 1092 (1690)
.+. =+.+-+.--|+++.||++.|-. .. ....=.-+|.+|||..|++.-+|-.--.+ ..++.|.-|
T Consensus 331 ~d~aK~vvA~Avr~~P~Sv~lW~kA~dL--E~------~~~~K~RVlRKALe~iP~sv~LWKaAVel----E~~~daril 398 (913)
T KOG0495|consen 331 PDVAKTVVANAVRFLPTSVRLWLKAADL--ES------DTKNKKRVLRKALEHIPRSVRLWKAAVEL----EEPEDARIL 398 (913)
T ss_pred hHHHHHHHHHHHHhCCCChhhhhhHHhh--hh------HHHHHHHHHHHHHHhCCchHHHHHHHHhc----cChHHHHHH
Confidence 222 1123344456777777776632 11 12334568999999999999999776666 667778899
Q ss_pred HHHHHhcCCCCHHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHH
Q 000307 1093 FSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQR 1172 (1690)
Q Consensus 1093 fekAVelaP~NY~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~t 1172 (1690)
+++||+.-|.+..||.-|-+++ -|+.|-.+|-..-..- |.. -++-+.-+-|--..|++++.-..
T Consensus 399 L~rAveccp~s~dLwlAlarLe--------tYenAkkvLNkaRe~i-ptd-------~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 399 LERAVECCPQSMDLWLALARLE--------TYENAKKVLNKAREII-PTD-------REIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred HHHHHHhccchHHHHHHHHHHH--------HHHHHHHHHHHHHhhC-CCC-------hhHHHHHHHHHHhcCCHHHHHHH
Confidence 9999999999999999999988 8999988884433333 332 25555666677788888877666
Q ss_pred HHhhcc-cccCCCC-cccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCC-Ccccchhhh-
Q 000307 1173 ISRLLI-PATGSND-RHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWP-PVQLEDDEK- 1248 (1690)
Q Consensus 1173 L~rLEq-~Al~G~s-E~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~-yvqvlkdEP- 1248 (1690)
|+|=.. -..+|.. .++-.|+....|.+.+ + -++|- -|+|-++ --|+..|-..-.|- -.+..+..|
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag--s--v~TcQ-AIi~avi------gigvEeed~~~tw~~da~~~~k~~~ 531 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAG--S--VITCQ-AIIRAVI------GIGVEEEDRKSTWLDDAQSCEKRPA 531 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcC--C--hhhHH-HHHHHHH------hhccccchhHhHHhhhHHHHHhcch
Confidence 654321 0122211 1122333444444331 1 11221 2222211 11222222222221 001111111
Q ss_pred -hhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHHHHHHHHHH-Hhc----chHHHHHHHHHHHHhCCCcchh-HHHH
Q 000307 1249 -QRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMA-VLN----GLECSMNLLEKYIKLYPSCLEL-VLMK 1321 (1690)
Q Consensus 1249 -dnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tKLN~IRq~I-~lE----dse~al~LfdklLe~~P~d~eL-~L~A 1321 (1690)
+-+.|++..|+.-|- +-| . |..-+ .+| ..++...||.++++.+|....| +|++
T Consensus 532 ~~carAVya~alqvfp------------------~k~-s-lWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~a 591 (913)
T KOG0495|consen 532 IECARAVYAHALQVFP------------------CKK-S-LWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYA 591 (913)
T ss_pred HHHHHHHHHHHHhhcc------------------chh-H-HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHH
Confidence 112222222211111 111 1 11111 133 6678888999999999988888 4444
Q ss_pred HHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHH----------HHHHHh--hhcccc
Q 000307 1322 ARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR----------WFHSVW--KVQYSQ 1389 (1690)
Q Consensus 1322 ayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~----------ff~gia--~~Q~~~ 1389 (1690)
.--.+.+-.-.|...+.+||+.+|++.. ||.--+....+...++.|..++.+ ||.++- .+|...
T Consensus 592 ke~w~agdv~~ar~il~~af~~~pnsee----iwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~ 667 (913)
T KOG0495|consen 592 KEKWKAGDVPAARVILDQAFEANPNSEE----IWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNV 667 (913)
T ss_pred HHHHhcCCcHHHHHHHHHHHHhCCCcHH----HHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhH
Confidence 4444444355777999999999999999 999999999999999999999877 777743 445588
Q ss_pred cccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhccCCcHHHHHHHHH
Q 000307 1390 VEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHA 1469 (1690)
Q Consensus 1390 deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYA 1469 (1690)
++|+..+..+..+. .||. -+|-++|.++++ +++.+-|.+||..-++.-|.- +..|-=-|
T Consensus 668 eeA~rllEe~lk~f---------p~f~--------Kl~lmlGQi~e~--~~~ie~aR~aY~~G~k~cP~~--ipLWllLa 726 (913)
T KOG0495|consen 668 EEALRLLEEALKSF---------PDFH--------KLWLMLGQIEEQ--MENIEMAREAYLQGTKKCPNS--IPLWLLLA 726 (913)
T ss_pred HHHHHHHHHHHHhC---------CchH--------HHHHHHhHHHHH--HHHHHHHHHHHHhccccCCCC--chHHHHHH
Confidence 89999987776655 3543 445889999999 999999999999999999987 77764222
Q ss_pred HHHhcCCC--CCCcccchhhhHHHHHHHHhhhcccccccc-cchhhhccccchhhHHHHhhhcCCCCCChhhHHHHHhhc
Q 000307 1470 MLLLINES--EPKEGAPISWQLKLLNSYLDRARSLPYLKL-LPRQFINNIERPRLQQLIDNLLSPVSSDFSLVNLVLEVC 1546 (1690)
Q Consensus 1470 YFLSle~~--dL~KAEqMS~~~KtVsTYLDTAWILf~~~~-lARiYI~~i~k~rv~~liDqaL~~~S~dsS~vNkALE~W 1546 (1690)
-. +.+ ++-+| -.-||+|.. +-| -+-.|| ++-|+ +...++-.--.-.+-+||+-|
T Consensus 727 kl---eEk~~~~~rA----------R~ildrarl---kNPk~~~lwl---e~Ir~----ElR~gn~~~a~~lmakALQec 783 (913)
T KOG0495|consen 727 KL---EEKDGQLVRA----------RSILDRARL---KNPKNALLWL---ESIRM----ELRAGNKEQAELLMAKALQEC 783 (913)
T ss_pred HH---HHHhcchhhH----------HHHHHHHHh---cCCCcchhHH---HHHHH----HHHcCCHHHHHHHHHHHHHhC
Confidence 11 111 11111 224555432 111 233343 12222 334444221122556677766
Q ss_pred cCCCC-------cccccccccchhHHHHHHHhhcCcchhhHHHHHHHhhccCCCCCCCCCchhHHHHHhhhhhhhhhccC
Q 000307 1547 YGPSL-------LPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNKDHNPNITDAVPESVLFWASSSLVSAIFHAV 1619 (1690)
Q Consensus 1547 ~g~sl-------LpqKI~~kKyI~dfVE~ime~~P~Ny~LALav~kll~k~~~~~~~d~~s~~~~fwA~s~l~nai~~a~ 1619 (1690)
-++.+ |..+-+ +| ..|+.++. ---+|..+-|+|+|++=.+-.
T Consensus 784 p~sg~LWaEaI~le~~~~-rk--Tks~DALk-kce~dphVllaia~lfw~e~k--------------------------- 832 (913)
T KOG0495|consen 784 PSSGLLWAEAIWLEPRPQ-RK--TKSIDALK-KCEHDPHVLLAIAKLFWSEKK--------------------------- 832 (913)
T ss_pred CccchhHHHHHHhccCcc-cc--hHHHHHHH-hccCCchhHHHHHHHHHHHHH---------------------------
Confidence 22222 111111 11 23444432 223455555555555433333
Q ss_pred CCCchHHHHHHHHHhhhchhHHHHHHHHHHhhhccccchHHHHHHHHhhhcccCCh---HHHHHHHH
Q 000307 1620 PVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPFSIKLWKCYYDLSKTKGDL---NTIVKAAR 1683 (1690)
Q Consensus 1620 pvape~vWveAa~~l~~l~~~~~i~~rfy~~AlsvyPfS~~LW~~y~~~~k~~g~~---~~ive~ar 1683 (1690)
++. ++-.|-||+-+=|=--.-|-=+|.|+..+|.- .+++.+|-
T Consensus 833 --------------------~~k-ar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 833 --------------------IEK-AREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred --------------------HHH-HHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 222 26667789989888888999999999999965 66666664
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.32 E-value=1.6e-10 Score=130.94 Aligned_cols=266 Identities=13% Similarity=0.089 Sum_probs=192.9
Q ss_pred hchhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhCCCCchHHHHHHHHHhcCC
Q 000307 1026 QVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS----EILWITYLLIFYSNTNSVGKDDMFSYSVKHNE 1101 (1690)
Q Consensus 1026 ~~~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtS----AeaWyeyl~lY~~~~~~~ea~emfekAVelaP 1101 (1690)
..+.+.+.|..+|..++.+ |+++.|+.++.++++..+.. ..+|+.++.+|...+....|...|+++++.+|
T Consensus 64 ~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~ 138 (389)
T PRK11788 64 VDPETVELHLALGNLFRRR-----GEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGD 138 (389)
T ss_pred cCcccHHHHHHHHHHHHHc-----CcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCc
Confidence 3456668888888877765 78899999999999865433 36899999999999999999999999999988
Q ss_pred CCHH----HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhc
Q 000307 1102 GSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1177 (1690)
Q Consensus 1102 ~NY~----Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLE 1177 (1690)
.+.. ++.+|...+ .|++|++.|..+.... ++. ....+...+..++.+|..+|++++|+..+.++.
T Consensus 139 ~~~~~~~~la~~~~~~g--------~~~~A~~~~~~~~~~~-~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 207 (389)
T PRK11788 139 FAEGALQQLLEIYQQEK--------DWQKAIDVAERLEKLG-GDS--LRVEIAHFYCELAQQALARGDLDAARALLKKAL 207 (389)
T ss_pred chHHHHHHHHHHHHHhc--------hHHHHHHHHHHHHHhc-CCc--chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 7765 788999999 9999999999988765 432 122344556788999999999999999888877
Q ss_pred ccccCCCCcccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHH-HHHH
Q 000307 1178 IPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAI-KLIE 1256 (1690)
Q Consensus 1178 q~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnal-AL~s 1256 (1690)
. ..+. . .....+++.+|...|..++|..+ +.++++.+|++.. ++..
T Consensus 208 ~-----~~p~-~------------------------~~~~~~la~~~~~~g~~~~A~~~---~~~~~~~~p~~~~~~~~~ 254 (389)
T PRK11788 208 A-----ADPQ-C------------------------VRASILLGDLALAQGDYAAAIEA---LERVEEQDPEYLSEVLPK 254 (389)
T ss_pred h-----HCcC-C------------------------HHHHHHHHHHHHHCCCHHHHHHH---HHHHHHHChhhHHHHHHH
Confidence 4 2221 0 01123467888888999999988 8888888887743 3444
Q ss_pred HHHHHHHhhcCCcchhhhh-----cccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCcchh-HHHHHHHhhcc--
Q 000307 1257 MAVNSVELYSNGESLEKET-----NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHD-- 1328 (1690)
Q Consensus 1257 mA~dYY~~~~ndEsla~~~-----n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d~eL-~L~AayL~~k~-- 1328 (1690)
++ ..|.. .|+.+.+... ....+....+.+...+....+.+.|+.+|+++++.+|++..+ .|+..++...+
T Consensus 255 l~-~~~~~-~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g 332 (389)
T PRK11788 255 LM-ECYQA-LGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEG 332 (389)
T ss_pred HH-HHHHH-cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCc
Confidence 53 44443 4544444333 111111222333333444669999999999999999999998 67777775442
Q ss_pred CCCccHHHHHHHHH
Q 000307 1329 FGDLSSVGFEEALI 1342 (1690)
Q Consensus 1329 m~e~Ai~vfe~aL~ 1342 (1690)
...+++.+|++.+.
T Consensus 333 ~~~~a~~~~~~~~~ 346 (389)
T PRK11788 333 RAKESLLLLRDLVG 346 (389)
T ss_pred cchhHHHHHHHHHH
Confidence 46678877877765
No 19
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.29 E-value=3.2e-12 Score=141.01 Aligned_cols=259 Identities=17% Similarity=0.136 Sum_probs=103.9
Q ss_pred HHHHHHHHHHhccccCchhhHHHHHHHHHHHH-Hh-CCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----
Q 000307 1032 EQCVEMALLILNQDANKLEGMKKALSLLSRAL-EA-DPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---- 1105 (1690)
Q Consensus 1032 qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrAL-EI-NPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~---- 1105 (1690)
...+.+|-.++.. |++++|+.+|.+.+ .+ +|++++.|..++.+...++....+.+++++.++.++.+-.
T Consensus 9 ~~~l~~A~~~~~~-----~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~ 83 (280)
T PF13429_consen 9 EEALRLARLLYQR-----GDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYER 83 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccc-----cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3456677666654 88899999996655 55 5999999999999999999999999999999999987655
Q ss_pred HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCC
Q 000307 1106 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND 1185 (1690)
Q Consensus 1106 Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~s 1185 (1690)
|..+ +..+ .|++|+.+++.....+ ++ .+.+..++++|...|+++++...|.+++. .....
T Consensus 84 l~~l-~~~~--------~~~~A~~~~~~~~~~~-~~--------~~~l~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~ 143 (280)
T PF13429_consen 84 LIQL-LQDG--------DPEEALKLAEKAYERD-GD--------PRYLLSALQLYYRLGDYDEAEELLEKLEE--LPAAP 143 (280)
T ss_dssp ----------------------------------------------------H-HHHTT-HHHHHHHHHHHHH---T---
T ss_pred cccc-cccc--------cccccccccccccccc-cc--------cchhhHHHHHHHHHhHHHHHHHHHHHHHh--ccCCC
Confidence 3333 4555 8999999998777665 43 36677888999999999999998888774 11111
Q ss_pred cccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhh
Q 000307 1186 RHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELY 1265 (1690)
Q Consensus 1186 E~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~ 1265 (1690)
....|-.+.|.++.+.|..++|..+ +.++++.+|++..++..++ ..+-.
T Consensus 144 --------------------------~~~~~~~~~a~~~~~~G~~~~A~~~---~~~al~~~P~~~~~~~~l~-~~li~- 192 (280)
T PF13429_consen 144 --------------------------DSARFWLALAEIYEQLGDPDKALRD---YRKALELDPDDPDARNALA-WLLID- 192 (280)
T ss_dssp --------------------------T-HHHHHHHHHHHHHCCHHHHHHHH---HHHHHHH-TT-HHHHHHHH-HHHCT-
T ss_pred --------------------------CCHHHHHHHHHHHHHcCCHHHHHHH---HHHHHHcCCCCHHHHHHHH-HHHHH-
Confidence 1223445668899999999999999 9999999999999888885 22221
Q ss_pred cCCcchhhhhcccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCcchh--HHHHHHHhhccCCCccHHHHHHHHHh
Q 000307 1266 SNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIK 1343 (1690)
Q Consensus 1266 ~ndEsla~~~n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d~eL--~L~AayL~~k~m~e~Ai~vfe~aL~~ 1343 (1690)
.| +.+++..++..+.+..|.+..+ .|..+|+..+. +++|+..|++++..
T Consensus 193 ~~----------------------------~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~-~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 193 MG----------------------------DYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR-YEEALEYLEKALKL 243 (280)
T ss_dssp TC----------------------------HHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT--HHHHHHHHHHHHHH
T ss_pred CC----------------------------ChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc-cccccccccccccc
Confidence 22 3445667778888888999999 77777777776 89999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 000307 1344 WPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWF 1379 (1690)
Q Consensus 1344 ~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ff 1379 (1690)
+|++.. +...|+..+...|+.++|.++-++.+
T Consensus 244 ~p~d~~----~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 244 NPDDPL----WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp STT-HH----HHHHHHHHHT----------------
T ss_pred cccccc----cccccccccccccccccccccccccc
Confidence 999999 99999999999999999999877633
No 20
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.25 E-value=2.7e-09 Score=133.75 Aligned_cols=470 Identities=14% Similarity=0.135 Sum_probs=293.1
Q ss_pred hhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcC-------
Q 000307 1028 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHN------- 1100 (1690)
Q Consensus 1028 ~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVela------- 1100 (1690)
|..+..-|-|+...|++.. ++.|+.|+.+|++|..+||.+|.|+.+++.+|+..++-+.+....++|++..
T Consensus 230 p~~v~alv~L~~~~l~~~d--~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~a 307 (1018)
T KOG2002|consen 230 PTCVSALVALGEVDLNFND--SDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKA 307 (1018)
T ss_pred hhhHHHHHHHHHHHHHccc--hHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHH
Confidence 4778888888888887754 3789999999999999999999999999999999999999999999999877
Q ss_pred CCCHHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccc
Q 000307 1101 EGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPA 1180 (1690)
Q Consensus 1101 P~NY~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~A 1180 (1690)
...||++-+|=.++ +|++|-..|.+-...+ +|. . +=.++=+.|.|...|++..++.+..++..
T Consensus 308 es~Y~~gRs~Ha~G--------d~ekA~~yY~~s~k~~-~d~-----~-~l~~~GlgQm~i~~~dle~s~~~fEkv~k-- 370 (1018)
T KOG2002|consen 308 ESFYQLGRSYHAQG--------DFEKAFKYYMESLKAD-NDN-----F-VLPLVGLGQMYIKRGDLEESKFCFEKVLK-- 370 (1018)
T ss_pred HHHHHHHHHHHhhc--------cHHHHHHHHHHHHccC-CCC-----c-cccccchhHHHHHhchHHHHHHHHHHHHH--
Confidence 23577999999999 9999999996665555 443 2 22567789999999999999999888875
Q ss_pred cCCCCcccccHHHHHHHhccCC-cc--chhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCccc-chhhhhhHHHHHH
Q 000307 1181 TGSNDRHSLFLSDILTCLTISD-KL--IFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQL-EDDEKQRAIKLIE 1256 (1690)
Q Consensus 1181 l~G~sE~~lSLsKi~~YLt~sD-kc--~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqv-lkdEPdnalAL~s 1256 (1690)
.+|...-.-+|.-||-... +| +...+-.| .|...-+.-+.-+||.. ..++ ...||.-.+-.+.
T Consensus 371 ---~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~-------l~K~~~~~~~d~~a~l~---laql~e~~d~~~sL~~~~ 437 (1018)
T KOG2002|consen 371 ---QLPNNYETMKILGCLYAHSAKKQEKRDKASNV-------LGKVLEQTPVDSEAWLE---LAQLLEQTDPWASLDAYG 437 (1018)
T ss_pred ---hCcchHHHHHHHHhHHHhhhhhhHHHHHHHHH-------HHHHHhcccccHHHHHH---HHHHHHhcChHHHHHHHH
Confidence 2221111224443333333 11 22222222 23333333444444332 2222 3467777777777
Q ss_pred HHHHHHHhhcCCcchhhhhcccchhHHHHHHHHHHHH-hcchHHHHHHHHHHHHh-----CCCc---chh---HHHHHHH
Q 000307 1257 MAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAV-LNGLECSMNLLEKYIKL-----YPSC---LEL---VLMKARL 1324 (1690)
Q Consensus 1257 mA~dYY~~~~ndEsla~~~n~k~d~~tKLN~IRq~I~-lEdse~al~LfdklLe~-----~P~d---~eL---~L~AayL 1324 (1690)
+|.+.+.. .+.. ...+ -+|-+.++-. +...+.|...|++.+.. .++. +.| -.+|.-+
T Consensus 438 ~A~d~L~~-~~~~-ip~E---------~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~ 506 (1018)
T KOG2002|consen 438 NALDILES-KGKQ-IPPE---------VLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL 506 (1018)
T ss_pred HHHHHHHH-cCCC-CCHH---------HHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence 77666653 2211 1111 1233444433 55778888888887766 2222 222 3344455
Q ss_pred hhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHH------------HHHHHhhhcc-cccc
Q 000307 1325 QKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR------------WFHSVWKVQY-SQVE 1391 (1690)
Q Consensus 1325 ~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~------------ff~gia~~Q~-~~de 1391 (1690)
..-++.+.|-..|..+|...|.-.- ++.-|+-.+..+++..+++..+.. =|.|.++.-+ ...-
T Consensus 507 E~l~~~~~A~e~Yk~Ilkehp~YId----~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~ 582 (1018)
T KOG2002|consen 507 EELHDTEVAEEMYKSILKEHPGYID----AYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKP 582 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHCchhHH----HHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcc
Confidence 5555677777888888888887666 666677777777888888877776 3455555444 3333
Q ss_pred cchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHH--HHHHhhh----------cChHHHHHHHHHHHhhccCC
Q 000307 1392 ISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNL--SLHRLLQ----------NDWNEARLAIDAALKAAASE 1459 (1690)
Q Consensus 1392 ALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD--~Lyq~Lq----------g~~~EAf~AYDkALk~np~N 1459 (1690)
|-+.+......... ..|-| ++|++ .+.+-|+ +..+.|+..|.++|+-.|.|
T Consensus 583 a~k~f~~i~~~~~~------~~D~Y-----------sliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN 645 (1018)
T KOG2002|consen 583 AKKKFETILKKTST------KTDAY-----------SLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKN 645 (1018)
T ss_pred cccHHHHHHhhhcc------CCchh-----------HHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcch
Confidence 33333322222211 16888 66665 4444333 34678999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCCCcccchhhhHHHH--------HHHHhhhcccccccccchhhhccccchhhHHHHhhhcCC
Q 000307 1460 HFKHCVREHAMLLLINESEPKEGAPISWQLKLL--------NSYLDRARSLPYLKLLPRQFINNIERPRLQQLIDNLLSP 1531 (1690)
Q Consensus 1460 ~~i~cLNNYAYFLSle~~dL~KAEqMS~~~KtV--------sTYLDTAWILf~~~~lARiYI~~i~k~rv~~liDqaL~~ 1531 (1690)
+.|=|=-+--|+..+. +.+|-. .|.-| .+||+-|-+++.++ .|+. --|.-++.|+.
T Consensus 646 --~yAANGIgiVLA~kg~-~~~A~d---IFsqVrEa~~~~~dv~lNlah~~~e~~----qy~~------AIqmYe~~lkk 709 (1018)
T KOG2002|consen 646 --MYAANGIGIVLAEKGR-FSEARD---IFSQVREATSDFEDVWLNLAHCYVEQG----QYRL------AIQMYENCLKK 709 (1018)
T ss_pred --hhhccchhhhhhhccC-chHHHH---HHHHHHHHHhhCCceeeeHHHHHHHHH----HHHH------HHHHHHHHHHH
Confidence 8888888888887663 666655 44333 22333344555553 3331 11222344444
Q ss_pred C--CCChhhHHHHHhhccCCCCcccccccccchhHHHHHHHhhcCcchhhHHHHH
Q 000307 1532 V--SSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVF 1584 (1690)
Q Consensus 1532 ~--S~dsS~vNkALE~W~g~slLpqKI~~kKyI~dfVE~ime~~P~Ny~LALav~ 1584 (1690)
. ..++....---+.|+.... -+.-+.-+...++..|+|+.|-+-++
T Consensus 710 f~~~~~~~vl~~Lara~y~~~~-------~~eak~~ll~a~~~~p~~~~v~FN~a 757 (1018)
T KOG2002|consen 710 FYKKNRSEVLHYLARAWYEAGK-------LQEAKEALLKARHLAPSNTSVKFNLA 757 (1018)
T ss_pred hcccCCHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHhCCccchHHhHHH
Confidence 1 2223333334445642211 12234666777899999988665444
No 21
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.23 E-value=2.3e-11 Score=154.26 Aligned_cols=136 Identities=8% Similarity=-0.004 Sum_probs=111.9
Q ss_pred HHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHH------------HHHHHhhhcc-cccccchhhcccCCCCCCC
Q 000307 1340 ALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR------------WFHSVWKVQY-SQVEISDPLVADMSHSSPE 1406 (1690)
Q Consensus 1340 aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~------------ff~gia~~Q~-~~deALD~lr~g~s~i~~e 1406 (1690)
+....|.|.. +|.|||..+...+++++|+++|++ ||+|+-++|. ..+++.-+ .+..-.+.+
T Consensus 23 ~~~~~p~n~~----a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~ 96 (906)
T PRK14720 23 ANNYSLSKFK----ELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN 96 (906)
T ss_pred cccCCcchHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc
Confidence 4567899999 999999999999999999999999 8899977777 55555544 233333445
Q ss_pred CCCCCCcccccccccchhhhhHHHHHHHHHh-----------hhcChHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcC
Q 000307 1407 STSTSDPEFSVSNRNQMDVMFGYLNLSLHRL-----------LQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLIN 1475 (1690)
Q Consensus 1407 s~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~-----------Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLSle 1475 (1690)
.+..+++++| ..|++.+++- -.|+.++|+++||++|+++|.| .+||||||||++..
T Consensus 97 ~~~~~ve~~~-----------~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n--~~aLNn~AY~~ae~ 163 (906)
T PRK14720 97 LKWAIVEHIC-----------DKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDN--PEIVKKLATSYEEE 163 (906)
T ss_pred cchhHHHHHH-----------HHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHh
Confidence 5567788877 4444444440 0599999999999999999999 99999999999999
Q ss_pred CCCCCcccchhhhHHHHHHHHhh
Q 000307 1476 ESEPKEGAPISWQLKLLNSYLDR 1498 (1690)
Q Consensus 1476 ~~dL~KAEqMS~~~KtVsTYLDT 1498 (1690)
+|+||.+|+. |+|.+|+|+
T Consensus 164 --dL~KA~~m~~--KAV~~~i~~ 182 (906)
T PRK14720 164 --DKEKAITYLK--KAIYRFIKK 182 (906)
T ss_pred --hHHHHHHHHH--HHHHHHHhh
Confidence 9999999999 999999997
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.22 E-value=9.4e-10 Score=140.03 Aligned_cols=303 Identities=15% Similarity=0.064 Sum_probs=204.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH-HHHHHHh--cCCCcccchHHHHH
Q 000307 1050 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-LWLMYIN--SRTPLNHRLDAYDA 1126 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~-Lw~mYIN--sr~s~ddrl~aYdr 1126 (1690)
|+|++|+.+|.++|+.+|+++++++.++.+|...++.++|.+.++++++.+|.+.+ +...|+. .+ .+.+
T Consensus 116 gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~--------~~~~ 187 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATD--------RNYD 187 (822)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcc--------hHHH
Confidence 78999999999999999999999999999999999999999999999999999888 5555555 44 5656
Q ss_pred HHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhccc--------------------c---cCC
Q 000307 1127 ALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIP--------------------A---TGS 1183 (1690)
Q Consensus 1127 AI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~--------------------A---l~G 1183 (1690)
||..|+++...+ |+. .++++.++..+...|-...|++-+..--.. + ...
T Consensus 188 AL~~~ekll~~~-P~n-------~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~ 259 (822)
T PRK14574 188 ALQASSEAVRLA-PTS-------EEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRS 259 (822)
T ss_pred HHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhccccccc
Confidence 999999999998 998 899999998888888888887654422210 0 001
Q ss_pred CCcc----cccHHHHHHHhc---cC------------Cccch--------hHHHHH--HHhhc-ccc-------HHHHhh
Q 000307 1184 NDRH----SLFLSDILTCLT---IS------------DKLIF--------WVCCVY--LVIYR-KLP-------DAVLQL 1226 (1690)
Q Consensus 1184 ~sE~----~lSLsKi~~YLt---~s------------Dkc~A--------wLc~iY--dl~Yr-vLP-------Gd~y~q 1226 (1690)
..|+ +-+|+.+..++. .. |+-.| -++..| +-... .|| ++-|+-
T Consensus 260 ~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~ 339 (822)
T PRK14574 260 ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYID 339 (822)
T ss_pred chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh
Confidence 1110 113444444443 10 11111 333333 11111 222 567888
Q ss_pred ccchhhhhcCCCCCcccchhhh------hhHHHHHHHHHHHHHhhcCCcchhhhh----cc-------------cch---
Q 000307 1227 LECEKELFAIDWPPVQLEDDEK------QRAIKLIEMAVNSVELYSNGESLEKET----NL-------------RSA--- 1280 (1690)
Q Consensus 1227 ne~~KEAf~I~W~yvqvlkdEP------dnalAL~smA~dYY~~~~ndEsla~~~----n~-------------k~d--- 1280 (1690)
.+.+.+|..| |.+++..+| ..+.....+.+.|.++ ++-+.+... .. +++
T Consensus 340 ~~~P~kA~~l---~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~--e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 340 RRLPEKAAPI---LSSLYYSDGKTFRNSDDLLDADDLYYSLNES--EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred cCCcHHHHHH---HHHHhhccccccCCCcchHHHHHHHHHHHhc--ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence 8889999998 888877653 2232233333333331 111111111 00 011
Q ss_pred h-HHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCcchh-HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHH
Q 000307 1281 H-CFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQY 1358 (1690)
Q Consensus 1281 ~-~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d~eL-~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QL 1358 (1690)
= +....++..++...+..+|..++++++..-|.+..| ..+|......+-|..|...++.++.++|++.. +..++
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~----~~~~~ 490 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLI----LERAQ 490 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHH----HHHHH
Confidence 0 111122223333558999999999999999999999 44555555555588999888999999999999 88999
Q ss_pred HHHHHhcCChhHHHHHHHH
Q 000307 1359 VEYALQNGRHDFAAELMDR 1377 (1690)
Q Consensus 1359 iq~Al~~e~~d~ai~L~~~ 1377 (1690)
+..++..++|+++.+++..
T Consensus 491 ~~~al~l~e~~~A~~~~~~ 509 (822)
T PRK14574 491 AETAMALQEWHQMELLTDD 509 (822)
T ss_pred HHHHHhhhhHHHHHHHHHH
Confidence 9999999999999888743
No 23
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.20 E-value=4.3e-10 Score=135.47 Aligned_cols=382 Identities=15% Similarity=0.079 Sum_probs=266.5
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHH
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDA 1123 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~a 1123 (1690)
..|+++.||.++..++|++|+..++|..++..+...+..+.+-++|..|++++|++|- ++.+-=..+ ++.+.-.-
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~G-rl~ea~~c 206 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEG-RLEEAKAC 206 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhc-ccchhHHH
Confidence 3578999999999999999999999999999999999999999999999999999998 555544444 55555555
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCc
Q 000307 1124 YDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDK 1203 (1690)
Q Consensus 1124 YdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDk 1203 (1690)
|-+||+.= |.- -=+.--|.-++..+|+..-||+.+++-.. ..|+
T Consensus 207 YlkAi~~q--------p~f-------AiawsnLg~~f~~~Gei~~aiq~y~eAvk-----ldP~---------------- 250 (966)
T KOG4626|consen 207 YLKAIETQ--------PCF-------AIAWSNLGCVFNAQGEIWLAIQHYEEAVK-----LDPN---------------- 250 (966)
T ss_pred HHHHHhhC--------Cce-------eeeehhcchHHhhcchHHHHHHHHHHhhc-----CCCc----------------
Confidence 55555422 211 11233456778889999999997755443 3342
Q ss_pred cchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccch---
Q 000307 1204 LIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSA--- 1280 (1690)
Q Consensus 1204 c~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d--- 1280 (1690)
|.-.|- =+|++|--.+...+|... |.+.+..-|..|++.=.||.=||+ -|+-+++...+++.-
T Consensus 251 --------f~dAYi-NLGnV~ke~~~~d~Avs~---Y~rAl~lrpn~A~a~gNla~iYye--qG~ldlAI~~Ykral~~~ 316 (966)
T KOG4626|consen 251 --------FLDAYI-NLGNVYKEARIFDRAVSC---YLRALNLRPNHAVAHGNLACIYYE--QGLLDLAIDTYKRALELQ 316 (966)
T ss_pred --------chHHHh-hHHHHHHHHhcchHHHHH---HHHHHhcCCcchhhccceEEEEec--cccHHHHHHHHHHHHhcC
Confidence 111121 258888888889999999 999999999999999999877888 466677766543322
Q ss_pred hHHHH--HHHHHHHH-hcchHHHHHHHHHHHHhCCCcchh--HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHH
Q 000307 1281 HCFAV--NHIWCMAV-LNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIW 1355 (1690)
Q Consensus 1281 ~~tKL--N~IRq~I~-lEdse~al~LfdklLe~~P~d~eL--~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW 1355 (1690)
..|+. |-|.-..- ..+.++++..+.+.|.++|.-++- -|.-.|..+.+ -++|...|+.+|+..|.=+. +.
T Consensus 317 P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~-~e~A~~ly~~al~v~p~~aa----a~ 391 (966)
T KOG4626|consen 317 PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGK-IEEATRLYLKALEVFPEFAA----AH 391 (966)
T ss_pred CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcc-chHHHHHHHHHHhhChhhhh----hh
Confidence 22222 21222222 348999999999999999999998 78788887777 78899999999999999999 99
Q ss_pred HHHHHHHHhcCChhHHHHHHHH-------HHHHHhhh------cccccccchhhcccCCCCCCCCCCCCCcccccccccc
Q 000307 1356 NQYVEYALQNGRHDFAAELMDR-------WFHSVWKV------QYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQ 1422 (1690)
Q Consensus 1356 ~QLiq~Al~~e~~d~ai~L~~~-------ff~gia~~------Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q 1422 (1690)
+-|.-..-++|++++|+.--++ |-.+..-. +.+-.+|+..+-+.. ++ ++.+ .|-.
T Consensus 392 nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI-~~----nPt~-AeAh------ 459 (966)
T KOG4626|consen 392 NNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI-QI----NPTF-AEAH------ 459 (966)
T ss_pred hhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH-hc----CcHH-HHHH------
Confidence 9999999999999999876665 33333222 224455554443221 12 2222 2322
Q ss_pred hhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHHHHHHhhhccc
Q 000307 1423 MDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDRARSL 1502 (1690)
Q Consensus 1423 ~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLSle~~dL~KAEqMS~~~KtVsTYLDTAWIL 1502 (1690)
+=|+-+|-. .|+..||..+|+.||+.+|+=-=-.|=.=|+.=...+..| -++.|-..+.+|.+-|. -|.|
T Consensus 460 -----sNLasi~kD--sGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D--~d~~~~kl~sivrdql~-~~rl 529 (966)
T KOG4626|consen 460 -----SNLASIYKD--SGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD--YDKRMKKLVSIVRDQLE-KNRL 529 (966)
T ss_pred -----hhHHHHhhc--cCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc--hHHHHHHHHHHHHHHHh-hhcC
Confidence 556667777 8999999999999999999521144444444444455543 34444432233333331 2666
Q ss_pred ccccc
Q 000307 1503 PYLKL 1507 (1690)
Q Consensus 1503 f~~~~ 1507 (1690)
|.--|
T Consensus 530 psvhP 534 (966)
T KOG4626|consen 530 PSVHP 534 (966)
T ss_pred CccCc
Confidence 66555
No 24
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.15 E-value=6.7e-08 Score=121.09 Aligned_cols=571 Identities=15% Similarity=0.157 Sum_probs=316.9
Q ss_pred HHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHHH-HH
Q 000307 1032 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWL-MY 1110 (1690)
Q Consensus 1032 qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw~-mY 1110 (1690)
+.=+..|..+.-. |+++.|..+|.-.+..||.++++||.++.+|-++|.-+.+....-.|.-++|.++.+|- +|
T Consensus 140 ~~ll~eAN~lfar-----g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~la 214 (895)
T KOG2076|consen 140 RQLLGEANNLFAR-----GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLA 214 (895)
T ss_pred HHHHHHHHHHHHh-----CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 4444445444433 88999999999999999999999999999999999999999999999999999999773 33
Q ss_pred HhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCc--c-
Q 000307 1111 INSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDR--H- 1187 (1690)
Q Consensus 1111 INsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE--~- 1187 (1690)
.-++ .+..+++|+-.|-+..... |++ -.+++-.++||..+|.+..|..+.-+|++ ..+..+ +
T Consensus 215 dls~-----~~~~i~qA~~cy~rAI~~~-p~n-------~~~~~ers~L~~~~G~~~~Am~~f~~l~~--~~p~~d~er~ 279 (895)
T KOG2076|consen 215 DLSE-----QLGNINQARYCYSRAIQAN-PSN-------WELIYERSSLYQKTGDLKRAMETFLQLLQ--LDPPVDIERI 279 (895)
T ss_pred HHHH-----hcccHHHHHHHHHHHHhcC-Ccc-------hHHHHHHHHHHHHhChHHHHHHHHHHHHh--hCCchhHHHH
Confidence 3222 2238888988888888887 777 79999999999999999999999999998 544111 0
Q ss_pred -cccHHHHHHHhccCCccchh------HH---------------HHH--HHhhccccHHHHhhcc---------------
Q 000307 1188 -SLFLSDILTCLTISDKLIFW------VC---------------CVY--LVIYRKLPDAVLQLLE--------------- 1228 (1690)
Q Consensus 1188 -~lSLsKi~~YLt~sDkc~Aw------Lc---------------~iY--dl~YrvLPGd~y~qne--------------- 1228 (1690)
++---.++.|.+.+++..|| +. ..| .-.|.+..-.+...-+
T Consensus 280 ~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~ 359 (895)
T KOG2076|consen 280 EDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDER 359 (895)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhh
Confidence 12222467788888887772 11 111 1111111111111111
Q ss_pred ----------c-hhhhhcCCC-C----Ccccch-------------hh--hhhHHHHHHHHHHHHHhhcCCcchhhhh--
Q 000307 1229 ----------C-EKELFAIDW-P----PVQLED-------------DE--KQRAIKLIEMAVNSVELYSNGESLEKET-- 1275 (1690)
Q Consensus 1229 ----------~-~KEAf~I~W-~----yvqvlk-------------dE--PdnalAL~smA~dYY~~~~ndEsla~~~-- 1275 (1690)
. ++..+.|+= + ..++-. .+ |....-|+-..++.|.. .+.-..+-..
T Consensus 360 ~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~-~~~~~~Al~~l~ 438 (895)
T KOG2076|consen 360 RREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTN-IGKYKEALRLLS 438 (895)
T ss_pred ccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 0 111222210 0 000001 11 22222222222344432 2211111111
Q ss_pred ---cccchhHHHH--HHHHHHHHhcchHHHHHHHHHHHHhCCCcchh--HHHHHHHhhccCCCccHHHHHHHHHhCCCCC
Q 000307 1276 ---NLRSAHCFAV--NHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGV 1348 (1690)
Q Consensus 1276 ---n~k~d~~tKL--N~IRq~I~lEdse~al~LfdklLe~~P~d~eL--~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa 1348 (1690)
+....+..-| .+-||+..++.-+.|+.-+.++|.+.|.+.+. .|.+.|.+..+ +++|..+++.++.-+|+++
T Consensus 439 ~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~-~EkalEtL~~~~~~D~~~~ 517 (895)
T KOG2076|consen 439 PITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGN-HEKALETLEQIINPDGRNA 517 (895)
T ss_pred HHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCC-HHHHHHHHhcccCCCccch
Confidence 3333444333 66789998889999999999999999999999 66666655555 9999988888886666666
Q ss_pred chhHHHHHH-------HHHHHHhcCChhHHHHHHHH---HHHHHhhh-cc---------------cccccchhhcccCCC
Q 000307 1349 PGIQCIWNQ-------YVEYALQNGRHDFAAELMDR---WFHSVWKV-QY---------------SQVEISDPLVADMSH 1402 (1690)
Q Consensus 1349 ~g~qcaW~Q-------Liq~Al~~e~~d~ai~L~~~---ff~gia~~-Q~---------------~~deALD~lr~g~s~ 1402 (1690)
+ .|+|.+ +....-+.|+.++=+.+... =|....++ +. ...+-+..+-.+...
T Consensus 518 e--~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k 595 (895)
T KOG2076|consen 518 E--ACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREK 595 (895)
T ss_pred h--hccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhc
Confidence 6 566644 44455566777766666555 11111111 10 001111111111001
Q ss_pred CCC-------CCCC--CCCcccccccccchhhh---hHHHHHHHHHhhhcChHHHHHHHHHHHhhccC--CcHHH-HHHH
Q 000307 1403 SSP-------ESTS--TSDPEFSVSNRNQMDVM---FGYLNLSLHRLLQNDWNEARLAIDAALKAAAS--EHFKH-CVRE 1467 (1690)
Q Consensus 1403 i~~-------es~s--~~vSDfy~~~~~Q~d~~---fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~--N~~i~-cLNN 1467 (1690)
.+. -.+. ...+++- .-.+|-. |--+=++|.+ .++++||....+.|+.+.-. -.-+- -|..
T Consensus 596 ~~~~~~~~~~l~d~~~~~~~e~~---~Lsiddwfel~~e~i~~L~k--~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~ 670 (895)
T KOG2076|consen 596 ATDDNVMEKALSDGTEFRAVELR---GLSIDDWFELFRELILSLAK--LQRVQEALSVVFTALEAYIFFQDSEIRKELQF 670 (895)
T ss_pred cCchHHhhhcccchhhhhhhhhc---cCcHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHhhhhhhccHHHHHHHHH
Confidence 100 0011 0111111 1123333 3333448888 99999999999999988762 11133 4444
Q ss_pred HHHHHhcCCCCCCcccchhhhHHHH-H---HHHhh----hcccccccccchhhhccccchhhHHHHhhhcCCCCCChhhH
Q 000307 1468 HAMLLLINESEPKEGAPISWQLKLL-N---SYLDR----ARSLPYLKLLPRQFINNIERPRLQQLIDNLLSPVSSDFSLV 1539 (1690)
Q Consensus 1468 YAYFLSle~~dL~KAEqMS~~~KtV-s---TYLDT----AWILf~~~~lARiYI~~i~k~rv~~liDqaL~~~S~dsS~v 1539 (1690)
-.++.++...+-..|.. + ++-+ . -|+|+ .|.| --..+++.+..-+..-+|-.++.+...++
T Consensus 671 ~~l~~s~~~~d~~~a~~--~-lR~~i~~~~~~~~~~q~~l~n~-----~~s~~~~~~q~v~~~R~~~~~~~~~~~~~--- 739 (895)
T KOG2076|consen 671 LGLKASLYARDPGDAFS--Y-LRSVITQFQFYLDVYQLNLWNL-----DFSYFSKYGQRVCYLRLIMRLLVKNKDDT--- 739 (895)
T ss_pred HHHHHHHhcCCHHHHHH--H-HHHHHHHHhhhhhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhccCccCC---
Confidence 45555565555555543 2 3322 2 24554 5775 11333334444444444444554433221
Q ss_pred HHHHhhccCC-CCcccccccccchhHHHHHHHhhcCcch----hhHHHHHH------HhhccCCCCCCCCCchhHHHHHh
Q 000307 1540 NLVLEVCYGP-SLLPRNFSKLKDLVDFVEGIMEIVPSNY----QLAFSVFK------LLNKDHNPNITDAVPESVLFWAS 1608 (1690)
Q Consensus 1540 NkALE~W~g~-slLpqKI~~kKyI~dfVE~ime~~P~Ny----~LALav~k------ll~k~~~~~~~d~~s~~~~fwA~ 1608 (1690)
.+|-+-+|- .++...+ |+-...-=++-..+|.+. -||+++.- ...+|+. -+++.
T Consensus 740 -~~l~~i~gh~~~~~~s~---~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~-----------i~qG~ 804 (895)
T KOG2076|consen 740 -PPLALIYGHNLFVNASF---KHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQ-----------IAQGF 804 (895)
T ss_pred -cceeeeechhHhhccch---HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHH-----------HHHHH
Confidence 122222111 0111111 111122223445677744 34444332 2333333 45666
Q ss_pred hhh--hhhhhccCCCCchHHHHHHHHHhhhchhHHHHHHHHHHhhhccccchHH
Q 000307 1609 SSL--VSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPFSIK 1660 (1690)
Q Consensus 1609 s~l--~nai~~a~pvape~vWveAa~~l~~l~~~~~i~~rfy~~AlsvyPfS~~ 1660 (1690)
++| +.-+..+- -.-|.... -|-..++ .|+..++..||.+||.++|.+..
T Consensus 805 afL~RY~~lR~~~-~~QEa~YN-igRayh~-~gl~~LA~~YYekvL~~~p~~~~ 855 (895)
T KOG2076|consen 805 AFLKRYKELRRCE-EKQEAFYN-IGRAYHQ-IGLVHLAVSYYEKVLEVSPKDVT 855 (895)
T ss_pred HHHHHHHHhhccH-HHHHHHHH-HHHHHHH-cccHHHHHHHHHHHhCCCccccc
Confidence 677 67765111 11233333 3334444 58899999999999999998753
No 25
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.14 E-value=4.4e-09 Score=123.42 Aligned_cols=279 Identities=11% Similarity=0.036 Sum_probs=187.4
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HhCCCCchHHHHHHHHHhcCCCCHH-----HHHHHHhcCCCcccchH
Q 000307 1049 LEGMKKALSLLSRALEADPTSEILWITYLLIF-YSNTNSVGKDDMFSYSVKHNEGSYA-----LWLMYINSRTPLNHRLD 1122 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEINPtSAeaWyeyl~lY-~~~~~~~ea~emfekAVelaP~NY~-----Lw~mYINsr~s~ddrl~ 1122 (1690)
.|++++|..++.++-+.. +.+.++|.++..+ .++++.+.++++|++|++.+|++.. .+.+|+..+
T Consensus 97 eGd~~~A~k~l~~~~~~~-~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g-------- 167 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA-EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARN-------- 167 (398)
T ss_pred CCCHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCC--------
Confidence 589999996666655542 2477777776666 9999999999999999999999864 378999999
Q ss_pred HHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCC
Q 000307 1123 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISD 1202 (1690)
Q Consensus 1123 aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sD 1202 (1690)
.|+.|+..|++..+.. |+. .+++..++++|.++|+++.|+.++.+|.. ..-.++. .......
T Consensus 168 ~~~~Al~~l~~~~~~~-P~~-------~~al~ll~~~~~~~gdw~~a~~~l~~l~k--~~~~~~~-----~~~~l~~--- 229 (398)
T PRK10747 168 ENHAARHGVDKLLEVA-PRH-------PEVLRLAEQAYIRTGAWSSLLDILPSMAK--AHVGDEE-----HRAMLEQ--- 229 (398)
T ss_pred CHHHHHHHHHHHHhcC-CCC-------HHHHHHHHHHHHHHHhHHHHHHHHHHHHH--cCCCCHH-----HHHHHHH---
Confidence 9999999999999988 888 89999999999999999999999999996 2211221 1110000
Q ss_pred ccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhh---cccc
Q 000307 1203 KLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKET---NLRS 1279 (1690)
Q Consensus 1203 kc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~---n~k~ 1279 (1690)
..|..|....... ...+++.=- ...+.+..|+++-+++..| ..+.. .|+...+... ..+.
T Consensus 230 -----------~a~~~l~~~~~~~--~~~~~l~~~--w~~lp~~~~~~~~~~~~~A-~~l~~-~g~~~~A~~~L~~~l~~ 292 (398)
T PRK10747 230 -----------QAWIGLMDQAMAD--QGSEGLKRW--WKNQSRKTRHQVALQVAMA-EHLIE-CDDHDTAQQIILDGLKR 292 (398)
T ss_pred -----------HHHHHHHHHHHHh--cCHHHHHHH--HHhCCHHHhCCHHHHHHHH-HHHHH-CCCHHHHHHHHHHHHhc
Confidence 0111111211111 122333321 2334455677777777776 44443 5555544443 1111
Q ss_pred hhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCcchh-HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHH
Q 000307 1280 AHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQY 1358 (1690)
Q Consensus 1280 d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d~eL-~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QL 1358 (1690)
..+..+-.+.-.+..++.+.++..+++.++.+|.++++ ..++......+.-+.|...|+.+++..|++.. |++ |
T Consensus 293 ~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~---~~~--L 367 (398)
T PRK10747 293 QYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD---YAW--L 367 (398)
T ss_pred CCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH---HHH--H
Confidence 11222222222223468889999999999999999998 44444444444477899999999999998765 444 6
Q ss_pred HHHHHhcCChhHHHHHHH
Q 000307 1359 VEYALQNGRHDFAAELMD 1376 (1690)
Q Consensus 1359 iq~Al~~e~~d~ai~L~~ 1376 (1690)
.....+.|+.+++.++-+
T Consensus 368 a~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 368 ADALDRLHKPEEAAAMRR 385 (398)
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 667777888888866554
No 26
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.11 E-value=1.2e-08 Score=126.92 Aligned_cols=377 Identities=11% Similarity=-0.008 Sum_probs=255.8
Q ss_pred hhhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhCCCCchHHHHHHHHHh--cCCCCHH---HHHHHHhcCCCcccch
Q 000307 1049 LEGMKKALSLLSRALEADP--TSEILWITYLLIFYSNTNSVGKDDMFSYSVK--HNEGSYA---LWLMYINSRTPLNHRL 1121 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEINP--tSAeaWyeyl~lY~~~~~~~ea~emfekAVe--laP~NY~---Lw~mYINsr~s~ddrl 1121 (1690)
.|+++.|+.+|....+..| -++..|-.++..+...+....+.+.+..+++ +.|+-+. |..+|...+
T Consensus 100 ~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g------- 172 (697)
T PLN03081 100 CGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG------- 172 (697)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCC-------
Confidence 3778999999999887543 3678899999999999998888888888876 4555444 788999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHH-HHHHHhcc
Q 000307 1122 DAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLS-DILTCLTI 1200 (1690)
Q Consensus 1122 ~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLs-Ki~~YLt~ 1200 (1690)
.+++|..+|.+|.. ++ .-.+..|+..|+..|++++|+..+.++.. .|..+...+.. -+..|...
T Consensus 173 -~~~~A~~lf~~m~~---~~--------~~t~n~li~~~~~~g~~~~A~~lf~~M~~---~g~~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 173 -MLIDARRLFDEMPE---RN--------LASWGTIIGGLVDAGNYREAFALFREMWE---DGSDAEPRTFVVMLRASAGL 237 (697)
T ss_pred -CHHHHHHHHhcCCC---CC--------eeeHHHHHHHHHHCcCHHHHHHHHHHHHH---hCCCCChhhHHHHHHHHhcC
Confidence 99999999999854 33 34678899999999999999999999984 34444233333 33466666
Q ss_pred CCccchhHHHHH--------HHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchh
Q 000307 1201 SDKLIFWVCCVY--------LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLE 1272 (1690)
Q Consensus 1201 sDkc~AwLc~iY--------dl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla 1272 (1690)
++-..+.-...+ ++.....+-+.|...|+..+|..+ +....+ .++...-.| +..|.. .|+-+.+
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~v---f~~m~~---~~~vt~n~l-i~~y~~-~g~~~eA 309 (697)
T PLN03081 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCV---FDGMPE---KTTVAWNSM-LAGYAL-HGYSEEA 309 (697)
T ss_pred CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHH---HHhCCC---CChhHHHHH-HHHHHh-CCCHHHH
Confidence 655544222211 222223456788888999999887 655532 355566666 455554 4444333
Q ss_pred hhh-------cccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCcchh--HHHHHHHhhccCCCccHHHHHHHHH
Q 000307 1273 KET-------NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLY-PSCLEL--VLMKARLQKHDFGDLSSVGFEEALI 1342 (1690)
Q Consensus 1273 ~~~-------n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~-P~d~eL--~L~AayL~~k~m~e~Ai~vfe~aL~ 1342 (1690)
... +.+.+..|=..+|+.+..+.+.+.+..++..+++.. +.|+.+ .|+..|.+... .++|..+|+++.+
T Consensus 310 ~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~-~~~A~~vf~~m~~ 388 (697)
T PLN03081 310 LCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGR-MEDARNVFDRMPR 388 (697)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCC-HHHHHHHHHhCCC
Confidence 333 233445554566666666768999999999999986 556666 88888888666 7899999998754
Q ss_pred hCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHH-----------HHHHHh--hhc-ccccccchhhcccCC--CCCCC
Q 000307 1343 KWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR-----------WFHSVW--KVQ-YSQVEISDPLVADMS--HSSPE 1406 (1690)
Q Consensus 1343 ~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~-----------ff~gia--~~Q-~~~deALD~lr~g~s--~i~~e 1406 (1690)
.|.. .|+-+|......|+.++|+++.++ -|.++- +.. ...++|..+|+.-.. .+.+
T Consensus 389 ---~d~~----t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p- 460 (697)
T PLN03081 389 ---KNLI----SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP- 460 (697)
T ss_pred ---CCee----eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC-
Confidence 3566 799999999999999999999998 222221 111 156677777763321 1111
Q ss_pred CCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchh
Q 000307 1407 STSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPIS 1486 (1690)
Q Consensus 1407 s~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLSle~~dL~KAEqMS 1486 (1690)
....| ..|-+.|.+ .|+.+||+..|+++ ...|+- .+|+--+--.. ...+++.|+.+.
T Consensus 461 -----~~~~y-----------~~li~~l~r--~G~~~eA~~~~~~~-~~~p~~---~~~~~Ll~a~~-~~g~~~~a~~~~ 517 (697)
T PLN03081 461 -----RAMHY-----------ACMIELLGR--EGLLDEAYAMIRRA-PFKPTV---NMWAALLTACR-IHKNLELGRLAA 517 (697)
T ss_pred -----Cccch-----------HhHHHHHHh--cCCHHHHHHHHHHC-CCCCCH---HHHHHHHHHHH-HcCCcHHHHHHH
Confidence 12335 888899999 99999999988875 233433 34443333222 234566665544
Q ss_pred h
Q 000307 1487 W 1487 (1690)
Q Consensus 1487 ~ 1487 (1690)
.
T Consensus 518 ~ 518 (697)
T PLN03081 518 E 518 (697)
T ss_pred H
Confidence 4
No 27
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.09 E-value=3.9e-09 Score=124.03 Aligned_cols=273 Identities=10% Similarity=-0.053 Sum_probs=195.5
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH-----HHHHHHhcCCCcccchH
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-----LWLMYINSRTPLNHRLD 1122 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~-----Lw~mYINsr~s~ddrl~ 1122 (1690)
..|++..|...+.++.+..|+....+...+.++.+++..+.+++++++|.+..|++.- .+.+++..+
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~-------- 167 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQN-------- 167 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCC--------
Confidence 4689999999999999999998888888899999999999999999999999998842 488999999
Q ss_pred HHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHH---hc
Q 000307 1123 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTC---LT 1199 (1690)
Q Consensus 1123 aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~Y---Lt 1199 (1690)
.|+.|+..++.+.+.. |+. .+++..+.++|.++|+++.|+..+.++..... .++....-.....+ +.
T Consensus 168 ~~~~Al~~l~~l~~~~-P~~-------~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~--~~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 168 ELHAARHGVDKLLEMA-PRH-------KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL--FDDEEFADLEQKAEIGLLD 237 (409)
T ss_pred CHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 888 79999999999999999999999999886221 12211111111222 21
Q ss_pred cCCc--cch-----h--HHHHH--HHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCC
Q 000307 1200 ISDK--LIF-----W--VCCVY--LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNG 1268 (1690)
Q Consensus 1200 ~sDk--c~A-----w--Lc~iY--dl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~nd 1268 (1690)
.++. ... | +...+ ........+..+...|...+|+.+ ..+.++..|++....+.
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~---l~~~l~~~pd~~~~~~~------------ 302 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEI---IFDGLKKLGDDRAISLP------------ 302 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHH---HHHHHhhCCCcccchhH------------
Confidence 1111 000 1 11111 344555555566666666666555 55555555555322111
Q ss_pred cchhhhhcccchhHHHHHHHHHHHH--hcchHHHHHHHHHHHHhCCCcc--hh--HHHHHHHhhccCCCccHHHHH--HH
Q 000307 1269 ESLEKETNLRSAHCFAVNHIWCMAV--LNGLECSMNLLEKYIKLYPSCL--EL--VLMKARLQKHDFGDLSSVGFE--EA 1340 (1690)
Q Consensus 1269 Esla~~~n~k~d~~tKLN~IRq~I~--lEdse~al~LfdklLe~~P~d~--eL--~L~AayL~~k~m~e~Ai~vfe--~a 1340 (1690)
.++.++. .++.+.++.++++.++.+|.++ .+ .|--.+++.++ .++|...|+ .+
T Consensus 303 ------------------~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~-~~~A~~~le~a~a 363 (409)
T TIGR00540 303 ------------------LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGE-FIEAADAFKNVAA 363 (409)
T ss_pred ------------------HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHccc-HHHHHHHHHHhHH
Confidence 2333333 2356777889999999999999 77 34444455555 778999999 68
Q ss_pred HHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHH
Q 000307 1341 LIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1377 (1690)
Q Consensus 1341 L~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ 1377 (1690)
++..|+... +. -|...+++.|+.++|.++-++
T Consensus 364 ~~~~p~~~~----~~-~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 364 CKEQLDAND----LA-MAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred hhcCCCHHH----HH-HHHHHHHHcCCHHHHHHHHHH
Confidence 889998876 33 678889999999999877765
No 28
>PRK12370 invasion protein regulator; Provisional
Probab=99.05 E-value=3e-09 Score=129.77 Aligned_cols=193 Identities=12% Similarity=0.027 Sum_probs=152.0
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC---------CchHHHHHHHHHhcCCCCHH----HHHHHHhcC
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN---------SVGKDDMFSYSVKHNEGSYA----LWLMYINSR 1114 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~---------~~ea~emfekAVelaP~NY~----Lw~mYINsr 1114 (1690)
..+.++.|+.+|.+|+++||+.+.+|..++.+|..... ..+|.+.+++|++++|++-. ++.+|...+
T Consensus 273 ~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 273 TPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS 352 (553)
T ss_pred CHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence 46788999999999999999999999999987764332 46889999999999999987 667788888
Q ss_pred CCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHH
Q 000307 1115 TPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDI 1194 (1690)
Q Consensus 1115 ~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi 1194 (1690)
.|++|+.+|++..+.+ |+. .++++.+..+|.+.|++++|+..+.+... ++.... ...+...
T Consensus 353 --------~~~~A~~~~~~Al~l~-P~~-------~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~-~~~~~~~ 413 (553)
T PRK12370 353 --------EYIVGSLLFKQANLLS-PIS-------ADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRA-AAGITKL 413 (553)
T ss_pred --------CHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCh-hhHHHHH
Confidence 8999999999988888 888 78899999999999999999999999886 444443 3333444
Q ss_pred HHHhccCCccch--hHHH---H---HHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHH
Q 000307 1195 LTCLTISDKLIF--WVCC---V---YLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVE 1263 (1690)
Q Consensus 1195 ~~YLt~sDkc~A--wLc~---i---Ydl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~ 1263 (1690)
..++..++-..| ++-. . ....+..++|.+|...|..+||... +.++...+|+...+...++ .+|.
T Consensus 414 ~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~---~~~~~~~~~~~~~~~~~l~-~~~~ 486 (553)
T PRK12370 414 WITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKL---TKEISTQEITGLIAVNLLY-AEYC 486 (553)
T ss_pred HHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHH---HHHhhhccchhHHHHHHHH-HHHh
Confidence 456666665444 2211 1 1344567788888889999999888 7888888888888888885 5554
No 29
>PLN03077 Protein ECB2; Provisional
Probab=99.04 E-value=2.9e-08 Score=126.26 Aligned_cols=393 Identities=13% Similarity=0.101 Sum_probs=251.2
Q ss_pred hhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcC--CCCHH---HHHHHHhcCCCcccch
Q 000307 1049 LEGMKKALSLLSRALEA--DPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHN--EGSYA---LWLMYINSRTPLNHRL 1121 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEI--NPtSAeaWyeyl~lY~~~~~~~ea~emfekAVela--P~NY~---Lw~mYINsr~s~ddrl 1121 (1690)
.|+++.|+.+|...++. .| +...|..++..+...+....+.+++..+++.- |+-+. |-.+|...+
T Consensus 266 ~g~~~eAl~lf~~M~~~g~~P-d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g------- 337 (857)
T PLN03077 266 NGECLEGLELFFTMRELSVDP-DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG------- 337 (857)
T ss_pred CCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcC-------
Confidence 47789999999998775 45 45667777788888888888999998888753 33333 888999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHH-HHhcc
Q 000307 1122 DAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDIL-TCLTI 1200 (1690)
Q Consensus 1122 ~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~-~YLt~ 1200 (1690)
.+++|..+|++|.. +| ...+..|+..|++.|++++|+..+.+++. .|..+...++..+. .|-..
T Consensus 338 -~~~~A~~vf~~m~~---~d--------~~s~n~li~~~~~~g~~~~A~~lf~~M~~---~g~~Pd~~t~~~ll~a~~~~ 402 (857)
T PLN03077 338 -SWGEAEKVFSRMET---KD--------AVSWTAMISGYEKNGLPDKALETYALMEQ---DNVSPDEITIASVLSACACL 402 (857)
T ss_pred -CHHHHHHHHhhCCC---CC--------eeeHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCCCceeHHHHHHHHhcc
Confidence 89999999998854 33 34688899999999999999999999874 45444444554444 66666
Q ss_pred CCccchhHHHHHHHhhcc--------ccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchh
Q 000307 1201 SDKLIFWVCCVYLVIYRK--------LPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLE 1272 (1690)
Q Consensus 1201 sDkc~AwLc~iYdl~Yrv--------LPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla 1272 (1690)
++-..+.-...+...... .+-+.|...|+.++|+.+ +.+..+ |+ +...-.| +..|.. .+.-..+
T Consensus 403 g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~v---f~~m~~--~d-~vs~~~m-i~~~~~-~g~~~eA 474 (857)
T PLN03077 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV---FHNIPE--KD-VISWTSI-IAGLRL-NNRCFEA 474 (857)
T ss_pred chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHH---HHhCCC--CC-eeeHHHH-HHHHHH-CCCHHHH
Confidence 666666333333222222 234567778888888887 655543 22 2233333 232322 2211111
Q ss_pred hhh------cccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-cchh--HHHHHHHhhccCCCccHHHHHHHHHh
Q 000307 1273 KET------NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPS-CLEL--VLMKARLQKHDFGDLSSVGFEEALIK 1343 (1690)
Q Consensus 1273 ~~~------n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~-d~eL--~L~AayL~~k~m~e~Ai~vfe~aL~~ 1343 (1690)
... ..+.+..|=..+|..+....+.+.+..++..+++.... +.-+ .|+..|.+... .++|..+|+..
T Consensus 475 ~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~-~~~A~~~f~~~--- 550 (857)
T PLN03077 475 LIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR-MNYAWNQFNSH--- 550 (857)
T ss_pred HHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCC-HHHHHHHHHhc---
Confidence 111 11222222233333333344677777777777765432 2222 77777777666 66777887775
Q ss_pred CCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHH------------HHHHH-hhhc-ccccccchhhcccC--CCCCCCC
Q 000307 1344 WPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR------------WFHSV-WKVQ-YSQVEISDPLVADM--SHSSPES 1407 (1690)
Q Consensus 1344 ~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~------------ff~gi-a~~Q-~~~deALD~lr~g~--s~i~~es 1407 (1690)
+.+.. .|+-+|......|+.++|+++.++ |-.-+ ++.. ...++|+..|..-. ..+.+
T Consensus 551 -~~d~~----s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P-- 623 (857)
T PLN03077 551 -EKDVV----SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP-- 623 (857)
T ss_pred -CCChh----hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC--
Confidence 56677 899999999999999999999987 21111 1111 25667777776332 11111
Q ss_pred CCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhh
Q 000307 1408 TSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISW 1487 (1690)
Q Consensus 1408 ~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLSle~~dL~KAEqMS~ 1487 (1690)
..+.| ..|.++|.+ .|+.+||...+++. ...|+-.+..+|.+ |+. -..+++.|+.+..
T Consensus 624 ----~~~~y-----------~~lv~~l~r--~G~~~eA~~~~~~m-~~~pd~~~~~aLl~-ac~---~~~~~e~~e~~a~ 681 (857)
T PLN03077 624 ----NLKHY-----------ACVVDLLGR--AGKLTEAYNFINKM-PITPDPAVWGALLN-ACR---IHRHVELGELAAQ 681 (857)
T ss_pred ----chHHH-----------HHHHHHHHh--CCCHHHHHHHHHHC-CCCCCHHHHHHHHH-HHH---HcCChHHHHHHHH
Confidence 12345 999999999 99999999999985 46676545555555 332 2456777776655
Q ss_pred hHHHH------HHHHhh-hcccccccc
Q 000307 1488 QLKLL------NSYLDR-ARSLPYLKL 1507 (1690)
Q Consensus 1488 ~~KtV------sTYLDT-AWILf~~~~ 1507 (1690)
+++ .+|... +|++...++
T Consensus 682 --~l~~l~p~~~~~y~ll~n~ya~~g~ 706 (857)
T PLN03077 682 --HIFELDPNSVGYYILLCNLYADAGK 706 (857)
T ss_pred --HHHhhCCCCcchHHHHHHHHHHCCC
Confidence 444 344444 777777777
No 30
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.02 E-value=3.6e-09 Score=127.78 Aligned_cols=323 Identities=13% Similarity=0.090 Sum_probs=224.5
Q ss_pred hhhhchhhhHHHHHHHHHHhcccc----------------------C-------chhhHHHHHHHHHHHHHhCCCCHHHH
Q 000307 1023 KLKQVELSNEQCVEMALLILNQDA----------------------N-------KLEGMKKALSLLSRALEADPTSEILW 1073 (1690)
Q Consensus 1023 ~Le~~~~d~qlWl~lAl~~Lnq~~----------------------n-------~~g~yDAALdLLsrALEINPtSAeaW 1073 (1690)
-||-+|.-+++||-+|--+.-+.. + +.|++..|..-|.+|+|++|.=+++|
T Consensus 142 aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiaw 221 (966)
T KOG4626|consen 142 AIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAW 221 (966)
T ss_pred HHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeee
Confidence 455566777999999854443321 1 35556678888999999999999999
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH-----HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhh
Q 000307 1074 ITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASAC 1148 (1690)
Q Consensus 1074 yeyl~lY~~~~~~~ea~emfekAVelaP~NY~-----Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ 1148 (1690)
..++-.|...|+-.++...|++||+++| ||- |+.+|-..+ .|++|+.+|++...-. |.-
T Consensus 222 snLg~~f~~~Gei~~aiq~y~eAvkldP-~f~dAYiNLGnV~ke~~--------~~d~Avs~Y~rAl~lr-pn~------ 285 (966)
T KOG4626|consen 222 SNLGCVFNAQGEIWLAIQHYEEAVKLDP-NFLDAYINLGNVYKEAR--------IFDRAVSCYLRALNLR-PNH------ 285 (966)
T ss_pred hhcchHHhhcchHHHHHHHHHHhhcCCC-cchHHHhhHHHHHHHHh--------cchHHHHHHHHHHhcC-Ccc------
Confidence 9999999999999999999999999997 554 888888888 8888888887655443 443
Q ss_pred hHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCcc---ch--------hHHHHH-HHhh
Q 000307 1149 ILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKL---IF--------WVCCVY-LVIY 1216 (1690)
Q Consensus 1149 ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc---~A--------wLc~iY-dl~Y 1216 (1690)
-.+.--|+-.|--+|..+-||.++.|-.. ..|+ .--+.=-+--..+|+. -| .||-.| +.-|
T Consensus 286 -A~a~gNla~iYyeqG~ldlAI~~Ykral~-----~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~ 358 (966)
T KOG4626|consen 286 -AVAHGNLACIYYEQGLLDLAIDTYKRALE-----LQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMN 358 (966)
T ss_pred -hhhccceEEEEeccccHHHHHHHHHHHHh-----cCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHH
Confidence 34455566678889999999999988775 3442 2111111112222222 22 444445 4444
Q ss_pred ccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhh-----cccchhHHHH--HHHH
Q 000307 1217 RKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKET-----NLRSAHCFAV--NHIW 1289 (1690)
Q Consensus 1217 rvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~-----n~k~d~~tKL--N~IR 1289 (1690)
. +|++|+.-++-.+|..+ |...+...|+-+.|.-.+| ..|.+ -| .+.+.. -.++..-|+- +-|-
T Consensus 359 N--Lgni~~E~~~~e~A~~l---y~~al~v~p~~aaa~nNLa-~i~kq-qg--nl~~Ai~~YkealrI~P~fAda~~NmG 429 (966)
T KOG4626|consen 359 N--LGNIYREQGKIEEATRL---YLKALEVFPEFAAAHNNLA-SIYKQ-QG--NLDDAIMCYKEALRIKPTFADALSNMG 429 (966)
T ss_pred H--HHHHHHHhccchHHHHH---HHHHHhhChhhhhhhhhHH-HHHHh-cc--cHHHHHHHHHHHHhcCchHHHHHHhcc
Confidence 3 68888888899999888 8888999999999998886 77765 22 222222 2222222222 1122
Q ss_pred HHHH-hcchHHHHHHHHHHHHhCCCcchh--HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcC
Q 000307 1290 CMAV-LNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNG 1366 (1690)
Q Consensus 1290 q~I~-lEdse~al~LfdklLe~~P~d~eL--~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e 1366 (1690)
-..- ..|.+.|++...+++..+|+=+|- -|.+.|=...+ -.+|+..|+++|.+.||=.. .-|=..-.+++.-.+.
T Consensus 430 nt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGn-i~~AI~sY~~aLklkPDfpd-A~cNllh~lq~vcdw~ 507 (966)
T KOG4626|consen 430 NTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGN-IPEAIQSYRTALKLKPDFPD-AYCNLLHCLQIVCDWT 507 (966)
T ss_pred hHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCC-cHHHHHHHHHHHccCCCCch-hhhHHHHHHHHHhccc
Confidence 2222 449999999999999999999999 88888877777 66899999999999999766 3444444455555555
Q ss_pred Chh----HHHHHHHHHH
Q 000307 1367 RHD----FAAELMDRWF 1379 (1690)
Q Consensus 1367 ~~d----~ai~L~~~ff 1379 (1690)
++| ++..|-++|.
T Consensus 508 D~d~~~~kl~sivrdql 524 (966)
T KOG4626|consen 508 DYDKRMKKLVSIVRDQL 524 (966)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 544 4455555543
No 31
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.94 E-value=5.5e-08 Score=122.51 Aligned_cols=343 Identities=15% Similarity=0.074 Sum_probs=244.8
Q ss_pred hhhhchhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 000307 1023 KLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEAD-----PTSEILWITYLLIFYSNTNSVGKDDMFSYSV 1097 (1690)
Q Consensus 1023 ~Le~~~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEIN-----PtSAeaWyeyl~lY~~~~~~~ea~emfekAV 1097 (1690)
-++..+.|.++||.+|..+..++. -++|++|..|+++- +=-+|++-.++-+++.++.-+.|.+.|..|.
T Consensus 406 ~~~~~~~d~~a~l~laql~e~~d~------~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~ 479 (1018)
T KOG2002|consen 406 VLEQTPVDSEAWLELAQLLEQTDP------WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSAL 479 (1018)
T ss_pred HHhcccccHHHHHHHHHHHHhcCh------HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHh
Confidence 456678888999999988887654 33455555555432 2357888888888899999999999999887
Q ss_pred hc-----CCCC---------HHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhh
Q 000307 1098 KH-----NEGS---------YALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMS 1163 (1690)
Q Consensus 1098 el-----aP~N---------Y~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qS 1163 (1690)
.. +++. |.|+.++-... .|+.|-++|-...+.+ |.= .|..+-|.-+-...
T Consensus 480 ~~~~~~~n~de~~~~~lt~~YNlarl~E~l~--------~~~~A~e~Yk~Ilkeh-p~Y-------Id~ylRl~~ma~~k 543 (1018)
T KOG2002|consen 480 GKLLEVANKDEGKSTNLTLKYNLARLLEELH--------DTEVAEEMYKSILKEH-PGY-------IDAYLRLGCMARDK 543 (1018)
T ss_pred hhhhhhcCccccccchhHHHHHHHHHHHhhh--------hhhHHHHHHHHHHHHC-chh-------HHHHHHhhHHHHhc
Confidence 66 3343 45676666666 8888889998888887 776 77777776444444
Q ss_pred cCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhh---hc-CCCC
Q 000307 1164 GNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKEL---FA-IDWP 1239 (1690)
Q Consensus 1164 GnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEA---f~-I~W~ 1239 (1690)
++.-.|+.-++.+.. .+..++ +=+.|.|+|++-+...+-+ |. |
T Consensus 544 ~~~~ea~~~lk~~l~--~d~~np----------------------------~arsl~G~~~l~k~~~~~a~k~f~~i--- 590 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALN--IDSSNP----------------------------NARSLLGNLHLKKSEWKPAKKKFETI--- 590 (1018)
T ss_pred cCcHHHHHHHHHHHh--cccCCc----------------------------HHHHHHHHHHHhhhhhcccccHHHHH---
Confidence 778888887777776 555555 3456789999988744333 33 4
Q ss_pred CcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCcchh-H
Q 000307 1240 PVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-V 1318 (1690)
Q Consensus 1240 yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d~eL-~ 1318 (1690)
..+...- +++|++++|| ++|-+...+++-. + ...-| --+.|+++|+++|..+|.+.-- -
T Consensus 591 ~~~~~~~--~D~YsliaLG-N~~~~~l~~~~rn----~--ek~kk-----------~~~KAlq~y~kvL~~dpkN~yAAN 650 (1018)
T KOG2002|consen 591 LKKTSTK--TDAYSLIALG-NVYIQALHNPSRN----P--EKEKK-----------HQEKALQLYGKVLRNDPKNMYAAN 650 (1018)
T ss_pred HhhhccC--CchhHHHHhh-HHHHHHhcccccC----h--HHHHH-----------HHHHHHHHHHHHHhcCcchhhhcc
Confidence 4444333 7899999998 7776523322100 0 01111 2468999999999999999766 3
Q ss_pred HHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcccccccchhhcc
Q 000307 1319 LMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVA 1398 (1690)
Q Consensus 1319 L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ff~gia~~Q~~~deALD~lr~ 1398 (1690)
=.+.-|..++--.+|+.+|-+|-+-+-+... .|.-++-.++..+.|-.|++.-+..+..+ .
T Consensus 651 GIgiVLA~kg~~~~A~dIFsqVrEa~~~~~d----v~lNlah~~~e~~qy~~AIqmYe~~lkkf--------------~- 711 (1018)
T KOG2002|consen 651 GIGIVLAEKGRFSEARDIFSQVREATSDFED----VWLNLAHCYVEQGQYRLAIQMYENCLKKF--------------Y- 711 (1018)
T ss_pred chhhhhhhccCchHHHHHHHHHHHHHhhCCc----eeeeHHHHHHHHHHHHHHHHHHHHHHHHh--------------c-
Confidence 3444455666688999999999999999999 99999999999999999998875522111 1
Q ss_pred cCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCC
Q 000307 1399 DMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESE 1478 (1690)
Q Consensus 1399 g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLSle~~d 1478 (1690)
..-.+++. .+|+-++|+ -|.+.||-.+--+|+-.+|.| ..++=|+|.-+--..+.
T Consensus 712 ----------~~~~~~vl-----------~~Lara~y~--~~~~~eak~~ll~a~~~~p~~--~~v~FN~a~v~kkla~s 766 (1018)
T KOG2002|consen 712 ----------KKNRSEVL-----------HYLARAWYE--AGKLQEAKEALLKARHLAPSN--TSVKFNLALVLKKLAES 766 (1018)
T ss_pred ----------ccCCHHHH-----------HHHHHHHHH--hhhHHHHHHHHHHHHHhCCcc--chHHhHHHHHHHHHHHH
Confidence 00013444 999999999 999999999999999999999 66888888766544443
Q ss_pred CCcccc
Q 000307 1479 PKEGAP 1484 (1690)
Q Consensus 1479 L~KAEq 1484 (1690)
.-+.++
T Consensus 767 ~lr~~k 772 (1018)
T KOG2002|consen 767 ILRLEK 772 (1018)
T ss_pred HHhccc
Confidence 333444
No 32
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.92 E-value=1e-08 Score=118.18 Aligned_cols=156 Identities=25% Similarity=0.302 Sum_probs=131.6
Q ss_pred hhhhchhhhHHHHHHHHHHhcc-------ccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHH
Q 000307 1023 KLKQVELSNEQCVEMALLILNQ-------DANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSY 1095 (1690)
Q Consensus 1023 ~Le~~~~d~qlWl~lAl~~Lnq-------~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfek 1095 (1690)
.+...|.|+++||+++-.--.- +.....-.+..+++|.+||+.||.+..+|..|+.++.+.-..+.....+++
T Consensus 11 ~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~ 90 (321)
T PF08424_consen 11 RVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEE 90 (321)
T ss_pred HHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 7888999999999999332222 223345578889999999999999999999999999999988888999999
Q ss_pred HHhcCCCCHHHHHHHHhcCCC------cccchHHHHHHHHHHHHhhhcC---CCCcchhhhhhHHHHHHHHHHHhhhcCH
Q 000307 1096 SVKHNEGSYALWLMYINSRTP------LNHRLDAYDAALSVLCRCASAS---DGDEMHASACILDLFLQMLQCFCMSGNT 1166 (1690)
Q Consensus 1096 AVelaP~NY~Lw~mYINsr~s------~ddrl~aYdrAI~aLe~las~~---~pDr~~~Sa~ILDvLL~LvqLY~qSGny 1166 (1690)
+++.+|+++.||..||+...+ +.+-...|.++|..+....... .++.....-.++++|+.+..+..++|-.
T Consensus 91 ~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~ 170 (321)
T PF08424_consen 91 LLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYT 170 (321)
T ss_pred HHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCch
Confidence 999999999999999997643 7788999999999996654432 2344455679999999999999999999
Q ss_pred HHHHHHHHhhcc
Q 000307 1167 EKAIQRISRLLI 1178 (1690)
Q Consensus 1167 dKAI~tL~rLEq 1178 (1690)
+.|++.+..+..
T Consensus 171 E~Ava~~Qa~lE 182 (321)
T PF08424_consen 171 ERAVALWQALLE 182 (321)
T ss_pred HHHHHHHHHHHH
Confidence 999999988876
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.88 E-value=7.8e-07 Score=108.87 Aligned_cols=322 Identities=19% Similarity=0.259 Sum_probs=238.4
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHHHHHHhcCCCcccchHHHHHH
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAA 1127 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw~mYINsr~s~ddrl~aYdrA 1127 (1690)
+.+.++=|..+|.|+|...|..-.+|.-.+.+--.-++.+.-...|++||++.|..-.||+||-..+ |-- -.-..|
T Consensus 528 k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~--w~a--gdv~~a 603 (913)
T KOG0495|consen 528 KRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEK--WKA--GDVPAA 603 (913)
T ss_pred hcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHH--Hhc--CCcHHH
Confidence 4566788999999999999999999999999988888888899999999999999999999998876 111 123455
Q ss_pred HHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccc-cCCCCcccccHHHHHHHhccCCccch
Q 000307 1128 LSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPA-TGSNDRHSLFLSDILTCLTISDKLIF 1206 (1690)
Q Consensus 1128 I~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~A-l~G~sE~~lSLsKi~~YLt~sDkc~A 1206 (1690)
...|.+....+ |.. +|+-|.-+.|...+..++.|-. |++.| ..+..|+ .
T Consensus 604 r~il~~af~~~-pns-------eeiwlaavKle~en~e~eraR~----llakar~~sgTeR------------------v 653 (913)
T KOG0495|consen 604 RVILDQAFEAN-PNS-------EEIWLAAVKLEFENDELERARD----LLAKARSISGTER------------------V 653 (913)
T ss_pred HHHHHHHHHhC-CCc-------HHHHHHHHHHhhccccHHHHHH----HHHHHhccCCcch------------------h
Confidence 55665566666 666 7888888888888888887765 44311 2233332 1
Q ss_pred hHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHHHH
Q 000307 1207 WVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVN 1286 (1690)
Q Consensus 1207 wLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tKLN 1286 (1690)
|.-.+++-.|. ++-+-|..|++-|+..|- .+.|+=
T Consensus 654 ~mKs~~~er~l----------------------------d~~eeA~rllEe~lk~fp-----------------~f~Kl~ 688 (913)
T KOG0495|consen 654 WMKSANLERYL----------------------------DNVEEALRLLEEALKSFP-----------------DFHKLW 688 (913)
T ss_pred hHHHhHHHHHh----------------------------hhHHHHHHHHHHHHHhCC-----------------chHHHH
Confidence 22222222221 233445555666654443 577886
Q ss_pred HHHHHHH--hcchHHHHHHHHHHHHhCCCcchhHHHHHHHhhcc-CCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHH
Q 000307 1287 HIWCMAV--LNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHD-FGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYAL 1363 (1690)
Q Consensus 1287 ~IRq~I~--lEdse~al~LfdklLe~~P~d~eL~L~AayL~~k~-m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al 1363 (1690)
||...|. .++.+.+..-+..=++.||.|+-|.|.-+.|.-+. ....|..+|+.+.-.+|+|+- +|.-.|+.-+
T Consensus 689 lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~----lwle~Ir~El 764 (913)
T KOG0495|consen 689 LMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNAL----LWLESIRMEL 764 (913)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcch----hHHHHHHHHH
Confidence 6766665 66889999999999999999999966667766665 566888999999999999999 9999999999
Q ss_pred hcCChhHHHHHHHH-----------HHHHHhhhcc--cccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHH
Q 000307 1364 QNGRHDFAAELMDR-----------WFHSVWKVQY--SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYL 1430 (1690)
Q Consensus 1364 ~~e~~d~ai~L~~~-----------ff~gia~~Q~--~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~L 1430 (1690)
+.|+.+.|..++.+ |-..|+..-. .--..+|++++- +-|+ -++ --+
T Consensus 765 R~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkc------e~dp----hVl-----------lai 823 (913)
T KOG0495|consen 765 RAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC------EHDP----HVL-----------LAI 823 (913)
T ss_pred HcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhc------cCCc----hhH-----------HHH
Confidence 99999999999887 7777776655 444556666622 1111 122 446
Q ss_pred HHHHHHhhhcChHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCC
Q 000307 1431 NLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINES 1477 (1690)
Q Consensus 1431 GD~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLSle~~ 1477 (1690)
+-++|. +...+.|.+-|++|++..|++ =.+|-.+--|-...|+
T Consensus 824 a~lfw~--e~k~~kar~Wf~Ravk~d~d~--GD~wa~fykfel~hG~ 866 (913)
T KOG0495|consen 824 AKLFWS--EKKIEKAREWFERAVKKDPDN--GDAWAWFYKFELRHGT 866 (913)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHccCCcc--chHHHHHHHHHHHhCC
Confidence 678888 999999999999999999998 6777666666556563
No 34
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.85 E-value=7e-08 Score=98.11 Aligned_cols=130 Identities=18% Similarity=0.209 Sum_probs=111.2
Q ss_pred hhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH---
Q 000307 1029 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--- 1105 (1690)
Q Consensus 1029 ~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~--- 1105 (1690)
...+.++.+|..++.+ |+++.|+..|.++++.+|+++.+|+.++.+|...+...++.+++++|+++.|.+..
T Consensus 29 ~~~~~~~~la~~~~~~-----~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 103 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQ-----GDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLN 103 (234)
T ss_pred cHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence 3457788888877765 78999999999999999999999999999999999999999999999999998765
Q ss_pred -HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcC-CCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1106 -LWLMYINSRTPLNHRLDAYDAALSVLCRCASAS-DGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1106 -Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~-~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
++.+|...+ .|++|+..|.+..... .+.. .+.+..+..+|...|++++|+..+.+...
T Consensus 104 ~~~~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (234)
T TIGR02521 104 NYGTFLCQQG--------KYEQAMQQFEQAIEDPLYPQP-------ARSLENAGLCALKAGDFDKAEKYLTRALQ 163 (234)
T ss_pred HHHHHHHHcc--------cHHHHHHHHHHHHhccccccc-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 778888888 9999999998876542 1222 56677889999999999999998888775
No 35
>PRK12370 invasion protein regulator; Provisional
Probab=98.85 E-value=3.7e-08 Score=120.40 Aligned_cols=135 Identities=12% Similarity=-0.010 Sum_probs=114.1
Q ss_pred hhhchhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCC
Q 000307 1024 LKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1103 (1690)
Q Consensus 1024 Le~~~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~N 1103 (1690)
++-.|.+.++|..+|..++.+ |+++.|...|.+||++||+++.+|+.++.+|...+..++|...|++|++++|.+
T Consensus 331 l~ldP~~~~a~~~lg~~~~~~-----g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~ 405 (553)
T PRK12370 331 TELDHNNPQALGLLGLINTIH-----SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR 405 (553)
T ss_pred HhcCCCCHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 455667778999888877665 778999999999999999999999999999999999999999999999999987
Q ss_pred HH----HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1104 YA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1104 Y~----Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
.. +++++...+ .|++|+..+.+.....+|+. ...+..+..+|...|++++|++.+.++.+
T Consensus 406 ~~~~~~~~~~~~~~g--------~~eeA~~~~~~~l~~~~p~~-------~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 406 AAAGITKLWITYYHT--------GIDDAIRLGDELRSQHLQDN-------PILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred hhhHHHHHHHHHhcc--------CHHHHHHHHHHHHHhccccC-------HHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 43 344455566 68999999988776654565 56778889999999999999999999886
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.81 E-value=2.7e-08 Score=110.20 Aligned_cols=253 Identities=16% Similarity=0.143 Sum_probs=108.0
Q ss_pred HHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhh
Q 000307 1154 LQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKEL 1233 (1690)
Q Consensus 1154 L~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEA 1233 (1690)
+.++.++.+.|++++|+++|.+.-.. ....+ +..|-.+.+.+....+...+|
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~-~~~~~---------------------------~~~~~~~~a~La~~~~~~~~A 63 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQK-IAPPD---------------------------DPEYWRLLADLAWSLGDYDEA 63 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccc-ccccc---------------------------ccccccccccccccccccccc
Confidence 46799999999999999988543320 10111 125666777777777888888
Q ss_pred hcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhh----cccch-hHHHHHHHHHHHHhcchHHHHHHHHHHH
Q 000307 1234 FAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKET----NLRSA-HCFAVNHIWCMAVLNGLECSMNLLEKYI 1308 (1690)
Q Consensus 1234 f~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~----n~k~d-~~tKLN~IRq~I~lEdse~al~LfdklL 1308 (1690)
... |.+++..+|.++..+..+ +.++. .++...+... -++.. ...-...+..+....+.+.+..+++++.
T Consensus 64 ~~a---y~~l~~~~~~~~~~~~~l-~~l~~--~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~ 137 (280)
T PF13429_consen 64 IEA---YEKLLASDKANPQDYERL-IQLLQ--DGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLE 137 (280)
T ss_dssp ------------------------------------------------------------H-HHHTT-HHHHHHHHHHHH
T ss_pred ccc---cccccccccccccccccc-ccccc--cccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 888 888888877776666555 34432 3333333322 11111 1111133334444669999999999988
Q ss_pred HhC--CCcchh-HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhh
Q 000307 1309 KLY--PSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKV 1385 (1690)
Q Consensus 1309 e~~--P~d~eL-~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ff~gia~~ 1385 (1690)
+.. |.+..+ ..+|......+.++.|+..|+++|+..|++.. +++.|+-..++.++.+++.++++.|-...
T Consensus 138 ~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~----~~~~l~~~li~~~~~~~~~~~l~~~~~~~--- 210 (280)
T PF13429_consen 138 ELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD----ARNALAWLLIDMGDYDEAREALKRLLKAA--- 210 (280)
T ss_dssp H-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH----HHHHHHHHHCTTCHHHHHHHHHHHHHHH----
T ss_pred hccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHCCChHHHHHHHHHHHHHC---
Confidence 766 677777 66666666666688999999999999999999 99999999999999999999887643221
Q ss_pred cccccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhccCCcHHHHH
Q 000307 1386 QYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCV 1465 (1690)
Q Consensus 1386 Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cL 1465 (1690)
+. .++++ ..+|.+|.. .|+.++|...|+++++.+|++ ...+
T Consensus 211 ----------------~~--------~~~~~-----------~~la~~~~~--lg~~~~Al~~~~~~~~~~p~d--~~~~ 251 (280)
T PF13429_consen 211 ----------------PD--------DPDLW-----------DALAAAYLQ--LGRYEEALEYLEKALKLNPDD--PLWL 251 (280)
T ss_dssp ----------------HT--------SCCHC-----------HHHHHHHHH--HT-HHHHHHHHHHHHHHSTT---HHHH
T ss_pred ----------------cC--------HHHHH-----------HHHHHHhcc--ccccccccccccccccccccc--cccc
Confidence 11 13555 677889999 899999999999999999999 8999
Q ss_pred HHHHHHHhcCCCCCCcccchhh
Q 000307 1466 REHAMLLLINESEPKEGAPISW 1487 (1690)
Q Consensus 1466 NNYAYFLSle~~dL~KAEqMS~ 1487 (1690)
..||..|...|. .++|.++-.
T Consensus 252 ~~~a~~l~~~g~-~~~A~~~~~ 272 (280)
T PF13429_consen 252 LAYADALEQAGR-KDEALRLRR 272 (280)
T ss_dssp HHHHHHHT--------------
T ss_pred cccccccccccc-ccccccccc
Confidence 999999988774 666666444
No 37
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.79 E-value=1.3e-06 Score=114.60 Aligned_cols=274 Identities=14% Similarity=0.074 Sum_probs=149.0
Q ss_pred hhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhCCCCchHHHHHHHHHhcC--CCCHH---HHHHHHhcCCCcccchH
Q 000307 1049 LEGMKKALSLLSRALEADPT-SEILWITYLLIFYSNTNSVGKDDMFSYSVKHN--EGSYA---LWLMYINSRTPLNHRLD 1122 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEINPt-SAeaWyeyl~lY~~~~~~~ea~emfekAVela--P~NY~---Lw~mYINsr~s~ddrl~ 1122 (1690)
.|+++.|+.+|.+..+.... +..+|-.++..|.+.+...+|.+.|+...+.. |+.+. |...|.+.+
T Consensus 450 ~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G-------- 521 (1060)
T PLN03218 450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG-------- 521 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc--------
Confidence 35566777777777666544 45666677777777777777777777666542 22222 555666666
Q ss_pred HHHHHHHHHHHhhhcC-CCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccH-HHHHHHhcc
Q 000307 1123 AYDAALSVLCRCASAS-DGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFL-SDILTCLTI 1200 (1690)
Q Consensus 1123 aYdrAI~aLe~las~~-~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSL-sKi~~YLt~ 1200 (1690)
.+++|+.+|++|.+.. .|| .-++..|+..|++.|++++|++.+.++... ..|..+...+. .-|..|...
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD--------~vTYnsLI~a~~k~G~~deA~~lf~eM~~~-~~gi~PD~vTynaLI~ay~k~ 592 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPD--------RVVFNALISACGQSGAVDRAFDVLAEMKAE-THPIDPDHITVGALMKACANA 592 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHC
Confidence 6677777776665432 233 346666777777777777777766666520 12223211111 112233333
Q ss_pred CCccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhh-hhhHHHHHHHHHHHHHhhcCCcchhhhh----
Q 000307 1201 SDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDE-KQRAIKLIEMAVNSVELYSNGESLEKET---- 1275 (1690)
Q Consensus 1201 sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdE-PdnalAL~smA~dYY~~~~ndEsla~~~---- 1275 (1690)
|..++|+.+ +....+.. +.+....-.+ ++.|.. .|+-+.+...
T Consensus 593 ---------------------------G~ldeA~el---f~~M~e~gi~p~~~tynsL-I~ay~k-~G~~deAl~lf~eM 640 (1060)
T PLN03218 593 ---------------------------GQVDRAKEV---YQMIHEYNIKGTPEVYTIA-VNSCSQ-KGDWDFALSIYDDM 640 (1060)
T ss_pred ---------------------------CCHHHHHHH---HHHHHHcCCCCChHHHHHH-HHHHHh-cCCHHHHHHHHHHH
Confidence 334444433 33332221 1111111122 222222 2222211111
Q ss_pred ---cccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCcchh--HHHHHHHhhccCCCccHHHHHHHHHh--CCCC
Q 000307 1276 ---NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLY-PSCLEL--VLMKARLQKHDFGDLSSVGFEEALIK--WPKG 1347 (1690)
Q Consensus 1276 ---n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~-P~d~eL--~L~AayL~~k~m~e~Ai~vfe~aL~~--~PkN 1347 (1690)
.-..+..+=-.+|..+....+.+.|..+|+.+.+.. +.+... .|..+|....+ .++|..+|+++.+. .|+
T Consensus 641 ~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~-~eeA~~lf~eM~~~g~~Pd- 718 (1060)
T PLN03218 641 KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN-WKKALELYEDIKSIKLRPT- 718 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCC-
Confidence 011111121233343444557888888888888764 223333 77777777666 67888888887653 443
Q ss_pred CchhHHHHHHHHHHHHhcCChhHHHHHHHH
Q 000307 1348 VPGIQCIWNQYVEYALQNGRHDFAAELMDR 1377 (1690)
Q Consensus 1348 a~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ 1377 (1690)
.. .|+.+|....+.+++++|+++.++
T Consensus 719 vv----tyN~LI~gy~k~G~~eeAlelf~e 744 (1060)
T PLN03218 719 VS----TMNALITALCEGNQLPKALEVLSE 744 (1060)
T ss_pred HH----HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33 688888888888888888888876
No 38
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.76 E-value=3.1e-06 Score=111.14 Aligned_cols=365 Identities=11% Similarity=0.086 Sum_probs=191.2
Q ss_pred hhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH---HHHHHHhcCCCcccchHHH
Q 000307 1050 EGMKKALSLLSRALEADPT--SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---LWLMYINSRTPLNHRLDAY 1124 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPt--SAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~---Lw~mYINsr~s~ddrl~aY 1124 (1690)
|+++.|+.+|..-.+-+.- +...+-.+..+|...+...+|..+|+.-.+ |+.+. |-..|...+ .+
T Consensus 384 G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--pd~~Tyn~LL~a~~k~g--------~~ 453 (1060)
T PLN03218 384 GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--PTLSTFNMLMSVCASSQ--------DI 453 (1060)
T ss_pred cCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--CCHHHHHHHHHHHHhCc--------CH
Confidence 4455555555555444421 222333344444444444445544444433 22222 333444444 45
Q ss_pred HHHHHHHHHhhhcC-CCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHH-HHHHhccCC
Q 000307 1125 DAALSVLCRCASAS-DGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSD-ILTCLTISD 1202 (1690)
Q Consensus 1125 drAI~aLe~las~~-~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsK-i~~YLt~sD 1202 (1690)
+.|..+|+.|.+.. .|| .-++-.|+..|+..|+++.|++.++++.. .|..+...+... |..|...++
T Consensus 454 e~A~~lf~~M~~~Gl~pD--------~~tynsLI~~y~k~G~vd~A~~vf~eM~~---~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 454 DGALRVLRLVQEAGLKAD--------CKLYTTLISTCAKSGKVDAMFEVFHEMVN---AGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHHHHHHHcCCCCC--------HHHHHHHHHHHHhCcCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHHCcC
Confidence 55555555544322 122 23444555555555555555555555542 222221111111 223444444
Q ss_pred ccchhHHHHH---------HHhhccccHHHHhhccchhhhhcCCCCCcccch----hhhhhHHHHHHHHHHHHHhhcCCc
Q 000307 1203 KLIFWVCCVY---------LVIYRKLPDAVLQLLECEKELFAIDWPPVQLED----DEKQRAIKLIEMAVNSVELYSNGE 1269 (1690)
Q Consensus 1203 kc~AwLc~iY---------dl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlk----dEPdnalAL~smA~dYY~~~~ndE 1269 (1690)
-..|.-...- ...|..|.. .|.+.|..++|+.+ +....+ ..|+. +..-.+ ++.|.. .|+-
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~-a~~k~G~~deA~~l---f~eM~~~~~gi~PD~-vTynaL-I~ay~k-~G~l 595 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALIS-ACGQSGAVDRAFDV---LAEMKAETHPIDPDH-ITVGAL-MKACAN-AGQV 595 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHHCCCHHHHHHH---HHHHHHhcCCCCCcH-HHHHHH-HHHHHH-CCCH
Confidence 3333111100 123333332 34455667777776 555533 35553 233333 343433 4443
Q ss_pred chhhhh-----cccc--hhHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCcchh-HHHHHHHhhccCCCccHHHHHH
Q 000307 1270 SLEKET-----NLRS--AHCFAVNHIWCMAVLNGLECSMNLLEKYIKL--YPSCLEL-VLMKARLQKHDFGDLSSVGFEE 1339 (1690)
Q Consensus 1270 sla~~~-----n~k~--d~~tKLN~IRq~I~lEdse~al~LfdklLe~--~P~d~eL-~L~AayL~~k~m~e~Ai~vfe~ 1339 (1690)
+.+... ...+ ...+=-.+|..+....+.+.|+.+|+++.+. .|+.... .|+.+|....+ .++|+.+|++
T Consensus 596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~-~eeA~~l~~e 674 (1060)
T PLN03218 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD-LDKAFEILQD 674 (1060)
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHH
Confidence 333333 1111 1222224566666666899999999999887 6766666 77777777666 7788999999
Q ss_pred HHHhC-CCCCchhHHHHHHHHHHHHhcCChhHHHHHHHHH-----------HHH-Hh-hhcc-cccccchhhcccCCCCC
Q 000307 1340 ALIKW-PKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRW-----------FHS-VW-KVQY-SQVEISDPLVADMSHSS 1404 (1690)
Q Consensus 1340 aL~~~-PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~f-----------f~g-ia-~~Q~-~~deALD~lr~g~s~i~ 1404 (1690)
+.+.. +-+.. .|+-||......+++++|+++.+.. |.. |. +.+. ..++|+++|+.-...
T Consensus 675 M~k~G~~pd~~----tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-- 748 (1060)
T PLN03218 675 ARKQGIKLGTV----SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-- 748 (1060)
T ss_pred HHHcCCCCCHH----HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--
Confidence 88753 22334 7999999999999999999998761 222 11 1222 777888888743111
Q ss_pred CCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhh--ccCCcHHHHH
Q 000307 1405 PESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKA--AASEHFKHCV 1465 (1690)
Q Consensus 1405 ~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~--np~N~~i~cL 1465 (1690)
.+..|.+ +|..|-..+.+ .|+.++|...|+.+++. .|+.....||
T Consensus 749 -----Gi~Pd~~---------Ty~sLL~a~~k--~G~le~A~~l~~~M~k~Gi~pd~~tynsL 795 (1060)
T PLN03218 749 -----GLCPNTI---------TYSILLVASER--KDDADVGLDLLSQAKEDGIKPNLVMCRCI 795 (1060)
T ss_pred -----CCCCCHH---------HHHHHHHHHHH--CCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 1123322 34555577888 88999999999988854 4444333344
No 39
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.75 E-value=3.4e-07 Score=103.87 Aligned_cols=201 Identities=9% Similarity=-0.096 Sum_probs=143.9
Q ss_pred hHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----H
Q 000307 1031 NEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----L 1106 (1690)
Q Consensus 1031 ~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----L 1106 (1690)
.+.|..++..+... |.++.|...|.++|+++|+.+.+|+.++.+|...+...+|.+.|++|++++|++.. +
T Consensus 64 a~~~~~~g~~~~~~-----g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~l 138 (296)
T PRK11189 64 AQLHYERGVLYDSL-----GLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNR 138 (296)
T ss_pred HHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 46788888876654 78899999999999999999999999999999999999999999999999998866 6
Q ss_pred HHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCc
Q 000307 1107 WLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDR 1186 (1690)
Q Consensus 1107 w~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE 1186 (1690)
+..|...+ .|++|++.|......+ |+. . .......++...+++++|+..+.+.-. . .++
T Consensus 139 g~~l~~~g--------~~~eA~~~~~~al~~~-P~~-------~-~~~~~~~l~~~~~~~~~A~~~l~~~~~---~-~~~ 197 (296)
T PRK11189 139 GIALYYGG--------RYELAQDDLLAFYQDD-PND-------P-YRALWLYLAESKLDPKQAKENLKQRYE---K-LDK 197 (296)
T ss_pred HHHHHHCC--------CHHHHHHHHHHHHHhC-CCC-------H-HHHHHHHHHHccCCHHHHHHHHHHHHh---h-CCc
Confidence 67788888 9999999999988877 654 1 112223455667899999998855332 1 122
Q ss_pred ccccHHHHHHHhccCCccchhHHHHH-------------HHhhccccHHHHhhccchhhhhcCCCCCcccchhhh-hhHH
Q 000307 1187 HSLFLSDILTCLTISDKLIFWVCCVY-------------LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEK-QRAI 1252 (1690)
Q Consensus 1187 ~~lSLsKi~~YLt~sDkc~AwLc~iY-------------dl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEP-dnal 1252 (1690)
...... ..++..++...+-....+ ..+-...+|.+|.+.|...+|... |.+++..+| +.+-
T Consensus 198 ~~~~~~--~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~---~~~Al~~~~~~~~e 272 (296)
T PRK11189 198 EQWGWN--IVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAAL---FKLALANNVYNFVE 272 (296)
T ss_pred cccHHH--HHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH---HHHHHHhCCchHHH
Confidence 122222 333334443322111111 112234569999999999999999 999998886 6655
Q ss_pred HHHHHHHHHHH
Q 000307 1253 KLIEMAVNSVE 1263 (1690)
Q Consensus 1253 AL~smA~dYY~ 1263 (1690)
+.+.. +....
T Consensus 273 ~~~~~-~e~~~ 282 (296)
T PRK11189 273 HRYAL-LELAL 282 (296)
T ss_pred HHHHH-HHHHH
Confidence 55544 34333
No 40
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.74 E-value=2.2e-07 Score=94.52 Aligned_cols=158 Identities=14% Similarity=0.123 Sum_probs=124.5
Q ss_pred hhchhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCC--C
Q 000307 1025 KQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNE--G 1102 (1690)
Q Consensus 1025 e~~~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP--~ 1102 (1690)
+..+.+...|..+|..++.+ |+++.|+..|.++++.+|..+.+|+.++.+|...+...++..+|++|++..+ .
T Consensus 59 ~~~p~~~~~~~~la~~~~~~-----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 133 (234)
T TIGR02521 59 EHDPDDYLAYLALALYYQQL-----GELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQ 133 (234)
T ss_pred HhCcccHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc
Confidence 33455668888888877766 7889999999999999999999999999999999999999999999998642 2
Q ss_pred CHH----HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1103 SYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1103 NY~----Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
... ++..|...+ .+++|+..|.+..... |+. .+.++.++.+|...|++++|+..+.+...
T Consensus 134 ~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~-~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 197 (234)
T TIGR02521 134 PARSLENAGLCALKAG--------DFDKAEKYLTRALQID-PQR-------PESLLELAELYYLRGQYKDARAYLERYQQ 197 (234)
T ss_pred chHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhC-cCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 211 778888888 9999999998888776 666 67889999999999999999999888775
Q ss_pred cccCCCCcccccHHHHHHHhccCCccch
Q 000307 1179 PATGSNDRHSLFLSDILTCLTISDKLIF 1206 (1690)
Q Consensus 1179 ~Al~G~sE~~lSLsKi~~YLt~sDkc~A 1206 (1690)
....++ .........+...++...|
T Consensus 198 --~~~~~~-~~~~~~~~~~~~~~~~~~a 222 (234)
T TIGR02521 198 --TYNQTA-ESLWLGIRIARALGDVAAA 222 (234)
T ss_pred --hCCCCH-HHHHHHHHHHHHHhhHHHH
Confidence 322233 2222334455555554444
No 41
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=98.71 E-value=3.6e-09 Score=79.88 Aligned_cols=22 Identities=55% Similarity=1.307 Sum_probs=21.0
Q ss_pred cceeecccc-cccCCCCcchhhh
Q 000307 877 PLCMYELRG-KCNNDECPWQHVK 898 (1690)
Q Consensus 877 ~lC~fel~G-~CNd~~C~wQH~~ 898 (1690)
|||+|||+| +|||++|.|||+|
T Consensus 1 ~lC~yEl~Gg~Cnd~~C~~QHfr 23 (23)
T PF10650_consen 1 PLCPYELTGGVCNDPDCEFQHFR 23 (23)
T ss_pred CCCccccCCCeeCCCCCCccccC
Confidence 699999998 9999999999986
No 42
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.70 E-value=4.7e-06 Score=104.28 Aligned_cols=329 Identities=9% Similarity=0.021 Sum_probs=202.0
Q ss_pred hhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhCCCCchHHHHHHHHHhcC--CCC--HH-HHHHHHhcCCCcccchHH
Q 000307 1050 EGMKKALSLLSRALEADPT-SEILWITYLLIFYSNTNSVGKDDMFSYSVKHN--EGS--YA-LWLMYINSRTPLNHRLDA 1123 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPt-SAeaWyeyl~lY~~~~~~~ea~emfekAVela--P~N--Y~-Lw~mYINsr~s~ddrl~a 1123 (1690)
|+++.|+.+|.+.++..+. +...|..++..+...+....+.+.+..+++.. |+- |. |-.+|...+ .
T Consensus 203 g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g--------~ 274 (697)
T PLN03081 203 GNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG--------D 274 (697)
T ss_pred cCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC--------C
Confidence 7788888888888876654 45677778888888888777877777776654 222 22 788999999 8
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHH-HHHHhccCC
Q 000307 1124 YDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSD-ILTCLTISD 1202 (1690)
Q Consensus 1124 YdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsK-i~~YLt~sD 1202 (1690)
+++|+.+|++|...+ ...+..|+..|++.|++++|+..+.++.. .|..+...+... +..|...++
T Consensus 275 ~~~A~~vf~~m~~~~-----------~vt~n~li~~y~~~g~~~eA~~lf~~M~~---~g~~pd~~t~~~ll~a~~~~g~ 340 (697)
T PLN03081 275 IEDARCVFDGMPEKT-----------TVAWNSMLAGYALHGYSEEALCLYYEMRD---SGVSIDQFTFSIMIRIFSRLAL 340 (697)
T ss_pred HHHHHHHHHhCCCCC-----------hhHHHHHHHHHHhCCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhccc
Confidence 999999998885432 45788999999999999999999999874 454443344433 446777777
Q ss_pred ccchhHHHHHHHh--------hccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhh
Q 000307 1203 KLIFWVCCVYLVI--------YRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKE 1274 (1690)
Q Consensus 1203 kc~AwLc~iYdl~--------YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~ 1274 (1690)
-..|.-...+.+. -...+.+.|...|..++|..+ +.+..+ | ++...-.| +..|.. .|+-+.+..
T Consensus 341 ~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~v---f~~m~~--~-d~~t~n~l-I~~y~~-~G~~~~A~~ 412 (697)
T PLN03081 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNV---FDRMPR--K-NLISWNAL-IAGYGN-HGRGTKAVE 412 (697)
T ss_pred hHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHH---HHhCCC--C-CeeeHHHH-HHHHHH-cCCHHHHHH
Confidence 6666322222221 122345666677777888776 555533 3 33444455 344433 333232222
Q ss_pred h-------cccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCcchh----HHHHHHHhhccCCCccHHHHHHHHHh
Q 000307 1275 T-------NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL----VLMKARLQKHDFGDLSSVGFEEALIK 1343 (1690)
Q Consensus 1275 ~-------n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d~eL----~L~AayL~~k~m~e~Ai~vfe~aL~~ 1343 (1690)
. +-+.+..|=..+|..+......+++..+|+.+.+.++-.+++ .|+..|- ..+..++|...|+++
T Consensus 413 lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~-r~G~~~eA~~~~~~~--- 488 (697)
T PLN03081 413 MFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG-REGLLDEAYAMIRRA--- 488 (697)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH-hcCCHHHHHHHHHHC---
Confidence 2 122222222233333333336777777777777765544443 3333333 333356666555432
Q ss_pred CCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcccccccchhhcccCCCCCCCCCCCCCcccccccccch
Q 000307 1344 WPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQM 1423 (1690)
Q Consensus 1344 ~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~ 1423 (1690)
|-... -.+|+.|+...-..++++.+..+.+.-+ . +.+ . ....|
T Consensus 489 -~~~p~--~~~~~~Ll~a~~~~g~~~~a~~~~~~l~-----------------~-----~~p----~-~~~~y------- 531 (697)
T PLN03081 489 -PFKPT--VNMWAALLTACRIHKNLELGRLAAEKLY-----------------G-----MGP----E-KLNNY------- 531 (697)
T ss_pred -CCCCC--HHHHHHHHHHHHHcCCcHHHHHHHHHHh-----------------C-----CCC----C-CCcch-------
Confidence 32222 1257777777777777777777664411 1 111 1 12356
Q ss_pred hhhhHHHHHHHHHhhhcChHHHHHHHHHHHhh
Q 000307 1424 DVMFGYLNLSLHRLLQNDWNEARLAIDAALKA 1455 (1690)
Q Consensus 1424 d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~ 1455 (1690)
-.|..+|.+ .|+++||...++...+.
T Consensus 532 ----~~L~~~y~~--~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 532 ----VVLLNLYNS--SGRQAEAAKVVETLKRK 557 (697)
T ss_pred ----HHHHHHHHh--CCCHHHHHHHHHHHHHc
Confidence 788889999 99999999999876643
No 43
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=2.1e-06 Score=103.05 Aligned_cols=144 Identities=15% Similarity=0.029 Sum_probs=103.0
Q ss_pred chHHHHHHHHHHHHhCCCcchh--HHHHHHHhhccCCCccHHHHHHHHHhCCCCCc-hhHHHHHHHHH--HHHhcCChhH
Q 000307 1296 GLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVP-GIQCIWNQYVE--YALQNGRHDF 1370 (1690)
Q Consensus 1296 dse~al~LfdklLe~~P~d~eL--~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~-g~qcaW~QLiq--~Al~~e~~d~ 1370 (1690)
++-.+...|+++++++|....+ -+.+.|++..+ ++..+..|..|..++|.|.. |||..=+-+|- +.=...++++
T Consensus 341 ~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~-~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 341 DSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQ-SEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred CchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhc-cHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999996 88999999999 99999999999999999999 55554332221 2222345666
Q ss_pred HHHHHHHHH-----HHHhhhcc-cccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHH
Q 000307 1371 AAELMDRWF-----HSVWKVQY-SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNE 1444 (1690)
Q Consensus 1371 ai~L~~~ff-----~gia~~Q~-~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~E 1444 (1690)
++.|--.+. ++++.|.. .-.++..+|...-.-.+ .-++.| .+-+.+|-- +++.+.
T Consensus 420 ai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP------~~~Evy-----------~~fAeiLtD--qqqFd~ 480 (606)
T KOG0547|consen 420 AISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFP------NCPEVY-----------NLFAEILTD--QQQFDK 480 (606)
T ss_pred HhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CCchHH-----------HHHHHHHhh--HHhHHH
Confidence 666554411 22333322 55555555554311111 135777 888888988 999999
Q ss_pred HHHHHHHHHhhccCC
Q 000307 1445 ARLAIDAALKAAASE 1459 (1690)
Q Consensus 1445 Af~AYDkALk~np~N 1459 (1690)
|..-||+|+...|.+
T Consensus 481 A~k~YD~ai~LE~~~ 495 (606)
T KOG0547|consen 481 AVKQYDKAIELEPRE 495 (606)
T ss_pred HHHHHHHHHhhcccc
Confidence 999999999999986
No 44
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.66 E-value=1.6e-06 Score=100.28 Aligned_cols=241 Identities=14% Similarity=0.086 Sum_probs=168.2
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH--------HHHHHHhcCCCcccch
Q 000307 1050 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--------LWLMYINSRTPLNHRL 1121 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~--------Lw~mYINsr~s~ddrl 1121 (1690)
++-|+|.++|-.-++.||..-++...++++|-++|....|..+-..-++-..-.+. |+.-|+..+
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aG------- 121 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAG------- 121 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhh-------
Confidence 34589999999999999999999999999999999999888776655544322222 889999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHH-----HH
Q 000307 1122 DAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDI-----LT 1196 (1690)
Q Consensus 1122 ~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi-----~~ 1196 (1690)
-||+|-++|..++.-. + .....+.+|+.+|.++++++|||.+-.+|.. +.|..- .+-++-| +.
T Consensus 122 -l~DRAE~~f~~L~de~--e------fa~~AlqqLl~IYQ~treW~KAId~A~~L~k--~~~q~~-~~eIAqfyCELAq~ 189 (389)
T COG2956 122 -LLDRAEDIFNQLVDEG--E------FAEGALQQLLNIYQATREWEKAIDVAERLVK--LGGQTY-RVEIAQFYCELAQQ 189 (389)
T ss_pred -hhhHHHHHHHHHhcch--h------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--cCCccc-hhHHHHHHHHHHHH
Confidence 9999999998886632 2 1268899999999999999999999998985 444442 3333222 23
Q ss_pred HhccCCccch--hHHHHH-----HHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCc
Q 000307 1197 CLTISDKLIF--WVCCVY-----LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGE 1269 (1690)
Q Consensus 1197 YLt~sDkc~A--wLc~iY-----dl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndE 1269 (1690)
++.-+|-..| ||...+ -++=.+++|++++..|....|... +..++.-||+-+--+.++=+..|.+ .|+.
T Consensus 190 ~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~---~e~v~eQn~~yl~evl~~L~~~Y~~-lg~~ 265 (389)
T COG2956 190 ALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEA---LERVLEQNPEYLSEVLEMLYECYAQ-LGKP 265 (389)
T ss_pred HhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHH---HHHHHHhChHHHHHHHHHHHHHHHH-hCCH
Confidence 3444555554 777776 567778999999999999999888 7888888888887777776667776 5542
Q ss_pred chhhhh-ccc---chhHHHHHHHHHHHH-hcchHHHHHHHHHHHHhCCC
Q 000307 1270 SLEKET-NLR---SAHCFAVNHIWCMAV-LNGLECSMNLLEKYIKLYPS 1313 (1690)
Q Consensus 1270 sla~~~-n~k---~d~~tKLN~IRq~I~-lEdse~al~LfdklLe~~P~ 1313 (1690)
.-.... ... ....-.+.++..+|. .++.+.|..++.+-+..+|+
T Consensus 266 ~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt 314 (389)
T COG2956 266 AEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPT 314 (389)
T ss_pred HHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc
Confidence 221111 000 001112233444454 44555555555555555554
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.66 E-value=3.4e-06 Score=99.62 Aligned_cols=288 Identities=11% Similarity=0.024 Sum_probs=188.4
Q ss_pred HHHHhCCCCchHHHHHHHHHhcCCCC---HH-HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHH
Q 000307 1078 LIFYSNTNSVGKDDMFSYSVKHNEGS---YA-LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLF 1153 (1690)
Q Consensus 1078 ~lY~~~~~~~ea~emfekAVelaP~N---Y~-Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvL 1153 (1690)
.+-...+....|...+.++.++.|+. |- .+..+..++ .+++|...|.+..+.++.+. +.+.
T Consensus 92 lla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g--------~~~~A~~~l~~a~~~~p~~~-------l~~~ 156 (409)
T TIGR00540 92 LLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRG--------DEARANQHLEEAAELAGNDN-------ILVE 156 (409)
T ss_pred HHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHhCCcCc-------hHHH
Confidence 34566788899999999999999865 33 578889999 99999999998877773334 4667
Q ss_pred HHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhh
Q 000307 1154 LQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKEL 1233 (1690)
Q Consensus 1154 L~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEA 1233 (1690)
+..++++.++|+++.|+..+.++.. ..-.++ .....-...|+..+|- +++
T Consensus 157 ~~~a~l~l~~~~~~~Al~~l~~l~~--~~P~~~-~~l~ll~~~~~~~~d~---------------------------~~a 206 (409)
T TIGR00540 157 IARTRILLAQNELHAARHGVDKLLE--MAPRHK-EVLKLAEEAYIRSGAW---------------------------QAL 206 (409)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHHHHhhH---------------------------HHH
Confidence 7779999999999999999999886 323333 3333334445554444 333
Q ss_pred hcCCCCCcccch---hhhhhHHHHHHHHH-HHHHh---hcCCcchhhhh--c---ccchhHHHHHHHHHHHHhcchHHHH
Q 000307 1234 FAIDWPPVQLED---DEKQRAIKLIEMAV-NSVEL---YSNGESLEKET--N---LRSAHCFAVNHIWCMAVLNGLECSM 1301 (1690)
Q Consensus 1234 f~I~W~yvqvlk---dEPdnalAL~smA~-dYY~~---~~ndEsla~~~--n---~k~d~~tKLN~IRq~I~lEdse~al 1301 (1690)
..+ +..+++ .+|.....+-.++. ..... ..+-+.+..-. . .+-+..+-+.+...++...+.+.|.
T Consensus 207 ~~~---l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~ 283 (409)
T TIGR00540 207 DDI---IDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQ 283 (409)
T ss_pred HHH---HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHH
Confidence 332 222221 23332211111110 01100 00000111000 1 1123455556666777777999999
Q ss_pred HHHHHHHHhCCCcchh----HHHHHHHhhccCCCccHHHHHHHHHhCCCCC--chhHHHHHHHHHHHHhcCChhHHHHHH
Q 000307 1302 NLLEKYIKLYPSCLEL----VLMKARLQKHDFGDLSSVGFEEALIKWPKGV--PGIQCIWNQYVEYALQNGRHDFAAELM 1375 (1690)
Q Consensus 1302 ~LfdklLe~~P~d~eL----~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa--~g~qcaW~QLiq~Al~~e~~d~ai~L~ 1375 (1690)
.++.+.++..|++..+ .....++...+ +..+...++.+++..|+++ . +..-|...++..++|++|.+.+
T Consensus 284 ~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~-~~~~~~~~e~~lk~~p~~~~~~----ll~sLg~l~~~~~~~~~A~~~l 358 (409)
T TIGR00540 284 EIIFDGLKKLGDDRAISLPLCLPIPRLKPED-NEKLEKLIEKQAKNVDDKPKCC----INRALGQLLMKHGEFIEAADAF 358 (409)
T ss_pred HHHHHHHhhCCCcccchhHHHHHhhhcCCCC-hHHHHHHHHHHHHhCCCChhHH----HHHHHHHHHHHcccHHHHHHHH
Confidence 9999999999999974 33333344433 5567799999999999999 6 7788888999999999999877
Q ss_pred HHHHHHHhhhcccccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhh
Q 000307 1376 DRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKA 1455 (1690)
Q Consensus 1376 ~~ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~ 1455 (1690)
+. -.+++ ..+ ....+ .-+|..|++ .|+.++|...|.++|+.
T Consensus 359 e~------------a~a~~--------~~p------~~~~~-----------~~La~ll~~--~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 359 KN------------VAACK--------EQL------DANDL-----------AMAADAFDQ--AGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HH------------hHHhh--------cCC------CHHHH-----------HHHHHHHHH--cCCHHHHHHHHHHHHHH
Confidence 42 00111 011 01124 688999999 99999999999999865
Q ss_pred cc
Q 000307 1456 AA 1457 (1690)
Q Consensus 1456 np 1457 (1690)
..
T Consensus 400 ~~ 401 (409)
T TIGR00540 400 ML 401 (409)
T ss_pred Hh
Confidence 43
No 46
>PLN03077 Protein ECB2; Provisional
Probab=98.64 E-value=2.5e-06 Score=108.93 Aligned_cols=349 Identities=11% Similarity=0.052 Sum_probs=191.1
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhc--CCCCHH---HHHHHHhcCCCcccchHH
Q 000307 1049 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKH--NEGSYA---LWLMYINSRTPLNHRLDA 1123 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVel--aP~NY~---Lw~mYINsr~s~ddrl~a 1123 (1690)
.|+++.|..+|....+ .+...|..+...|.+.+..++|.++|+...+. .|+.+. +-..|.+.+ .
T Consensus 336 ~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g--------~ 404 (857)
T PLN03077 336 LGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLG--------D 404 (857)
T ss_pred cCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccc--------h
Confidence 4566666666665432 34456666666666666666666666654332 244444 344455555 6
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCc
Q 000307 1124 YDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDK 1203 (1690)
Q Consensus 1124 YdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDk 1203 (1690)
+++|.++++.+.+..-... ..+.-.|++.|+..|++++|+..++++.. .+.
T Consensus 405 ~~~a~~l~~~~~~~g~~~~-------~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~d~----------------- 455 (857)
T PLN03077 405 LDVGVKLHELAERKGLISY-------VVVANALIEMYSKCKCIDKALEVFHNIPE-----KDV----------------- 455 (857)
T ss_pred HHHHHHHHHHHHHhCCCcc-------hHHHHHHHHHHHHcCCHHHHHHHHHhCCC-----CCe-----------------
Confidence 6666666666555321112 34556677777777777777776666553 111
Q ss_pred cchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchh-hhhhHHHHHHHHHHHHHhhcCCcchhhhh-------
Q 000307 1204 LIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDD-EKQRAIKLIEMAVNSVELYSNGESLEKET------- 1275 (1690)
Q Consensus 1204 c~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkd-EPdnalAL~smA~dYY~~~~ndEsla~~~------- 1275 (1690)
+.|..|. .-|.++|...||+.+ +.+.++. .|+.. .+..+ +..|.. .++-+...+.
T Consensus 456 ----------vs~~~mi-~~~~~~g~~~eA~~l---f~~m~~~~~pd~~-t~~~l-L~a~~~-~g~l~~~~~i~~~~~~~ 518 (857)
T PLN03077 456 ----------ISWTSII-AGLRLNNRCFEALIF---FRQMLLTLKPNSV-TLIAA-LSACAR-IGALMCGKEIHAHVLRT 518 (857)
T ss_pred ----------eeHHHHH-HHHHHCCCHHHHHHH---HHHHHhCCCCCHh-HHHHH-HHHHhh-hchHHHhHHHHHHHHHh
Confidence 1122221 223455666666665 4444322 33332 22333 344443 3333222222
Q ss_pred cccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCcchh-HHHHHHHhhccCCCccHHHHHHHHH--hCCCCCchhH
Q 000307 1276 NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALI--KWPKGVPGIQ 1352 (1690)
Q Consensus 1276 n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d~eL-~L~AayL~~k~m~e~Ai~vfe~aL~--~~PkNa~g~q 1352 (1690)
....+..+.=.+|.-|....+.+.|..+|+.. .|+-+.. .|..+|.+..+ .++|+.+|++..+ +.|+...
T Consensus 519 g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~-~~~A~~lf~~M~~~g~~Pd~~T--- 591 (857)
T PLN03077 519 GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGK-GSMAVELFNRMVESGVNPDEVT--- 591 (857)
T ss_pred CCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCccc---
Confidence 11111111113344444455788888888875 3433333 77777766655 7888888888776 4566655
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHH------------HHHHHhhhcc---cccccchhhcccCCCCCCCCCCCCCccccc
Q 000307 1353 CIWNQYVEYALQNGRHDFAAELMDR------------WFHSVWKVQY---SQVEISDPLVADMSHSSPESTSTSDPEFSV 1417 (1690)
Q Consensus 1353 caW~QLiq~Al~~e~~d~ai~L~~~------------ff~gia~~Q~---~~deALD~lr~g~s~i~~es~s~~vSDfy~ 1417 (1690)
++-+|...-+.|.++++.++... -|.++-..-. ..++|.+.++.- ++.++ ...|
T Consensus 592 --~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m--~~~pd------~~~~- 660 (857)
T PLN03077 592 --FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM--PITPD------PAVW- 660 (857)
T ss_pred --HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC--CCCCC------HHHH-
Confidence 66777777778888888777765 1222222111 567777777632 12110 2223
Q ss_pred ccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhh
Q 000307 1418 SNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISW 1487 (1690)
Q Consensus 1418 ~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLSle~~dL~KAEqMS~ 1487 (1690)
-++|+ .+.. +++.+.|..|.++.++..|++.-..++.=-.|. .....++|+++..
T Consensus 661 ---------~aLl~-ac~~--~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya---~~g~~~~a~~vr~ 715 (857)
T PLN03077 661 ---------GALLN-ACRI--HRHVELGELAAQHIFELDPNSVGYYILLCNLYA---DAGKWDEVARVRK 715 (857)
T ss_pred ---------HHHHH-HHHH--cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH---HCCChHHHHHHHH
Confidence 14444 4444 899999999999999999976333333222332 2344777777666
No 47
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=2.8e-06 Score=102.01 Aligned_cols=274 Identities=16% Similarity=0.159 Sum_probs=200.6
Q ss_pred HHHHHHHHHHhccccCchhhHHHHHHHHHHHHHh---CC-CC---------HHHHHHHHHHHHhCCCCchHHHHHHHHHh
Q 000307 1032 EQCVEMALLILNQDANKLEGMKKALSLLSRALEA---DP-TS---------EILWITYLLIFYSNTNSVGKDDMFSYSVK 1098 (1690)
Q Consensus 1032 qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEI---NP-tS---------AeaWyeyl~lY~~~~~~~ea~emfekAVe 1098 (1690)
+.=+.-|+.+|--..+ +.|+.|.+.+....+. -+ .+ ++++.+-+-++.-.++..++++.|.+|++
T Consensus 277 Da~l~~~l~~l~~~~~--e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 277 DAALAEALEALEKGLE--EGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred hhhHHHHHHHHHhhCc--hhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 4445555555544332 4577777766554321 11 12 66777777777777889999999999999
Q ss_pred cCCCCHH----HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHH
Q 000307 1099 HNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRIS 1174 (1690)
Q Consensus 1099 laP~NY~----Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~ 1174 (1690)
++|.+-. ++.+|+... +=.+....|-....- ||.. -|+++.+.|++...++|+.||+-
T Consensus 355 l~~~~~~lyI~~a~~y~d~~--------~~~~~~~~F~~A~~l-dp~n-------~dvYyHRgQm~flL~q~e~A~aD-- 416 (606)
T KOG0547|consen 355 LDPAFNSLYIKRAAAYADEN--------QSEKMWKDFNKAEDL-DPEN-------PDVYYHRGQMRFLLQQYEEAIAD-- 416 (606)
T ss_pred cCcccchHHHHHHHHHhhhh--------ccHHHHHHHHHHHhc-CCCC-------CchhHhHHHHHHHHHHHHHHHHH--
Confidence 9987644 889999888 667777777443334 4888 89999999999999999999871
Q ss_pred hhcccccCCCCcccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHH
Q 000307 1175 RLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKL 1254 (1690)
Q Consensus 1175 rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL 1254 (1690)
|++....+|+++++.
T Consensus 417 -----------------------------------------------------------------F~Kai~L~pe~~~~~ 431 (606)
T KOG0547|consen 417 -----------------------------------------------------------------FQKAISLDPENAYAY 431 (606)
T ss_pred -----------------------------------------------------------------HHHHhhcChhhhHHH
Confidence 122233589999999
Q ss_pred HHHHHHHHHhhcCCcchhhhhcccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCcchh-HHHHHHHhhccCCCcc
Q 000307 1255 IEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLS 1333 (1690)
Q Consensus 1255 ~smA~dYY~~~~ndEsla~~~n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d~eL-~L~AayL~~k~m~e~A 1333 (1690)
+.+++-.|++ + ..++++..|....+.-|.|+++ .|+|.-|.-++.=+.|
T Consensus 432 iQl~~a~Yr~--~----------------------------k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A 481 (606)
T KOG0547|consen 432 IQLCCALYRQ--H----------------------------KIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKA 481 (606)
T ss_pred HHHHHHHHHH--H----------------------------HHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHH
Confidence 9999878874 1 3567888999999999999999 9999998888878899
Q ss_pred HHHHHHHHHhCCC------CCc-hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcccccccchhhcccCCCCCCC
Q 000307 1334 SVGFEEALIKWPK------GVP-GIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPE 1406 (1690)
Q Consensus 1334 i~vfe~aL~~~Pk------Na~-g~qcaW~QLiq~Al~~e~~d~ai~L~~~ff~gia~~Q~~~deALD~lr~g~s~i~~e 1406 (1690)
+..|.++++++|+ |.. .++-+-+ ..-|. ++++.++.||+. |++ +.+
T Consensus 482 ~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l---~~qwk-~d~~~a~~Ll~K--------------A~e--------~Dp- 534 (606)
T KOG0547|consen 482 VKQYDKAIELEPREHLIIVNAAPLVHKALL---VLQWK-EDINQAENLLRK--------------AIE--------LDP- 534 (606)
T ss_pred HHHHHHHHhhccccccccccchhhhhhhHh---hhchh-hhHHHHHHHHHH--------------HHc--------cCc-
Confidence 9999999999999 554 4444432 22365 699999999965 222 212
Q ss_pred CCCCCCcccccccccchhhhhHHHHH--HHHHhhhcChHHHHHHHHHHHhhccCCcHHHHHHHH
Q 000307 1407 STSTSDPEFSVSNRNQMDVMFGYLNL--SLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREH 1468 (1690)
Q Consensus 1407 s~s~~vSDfy~~~~~Q~d~~fa~LGD--~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNY 1468 (1690)
.+| ++|.++ ..-| +|+.+||.+.||+++.++-.+ ..-++=|
T Consensus 535 -----kce------------~A~~tlaq~~lQ--~~~i~eAielFEksa~lArt~--~E~~~a~ 577 (606)
T KOG0547|consen 535 -----KCE------------QAYETLAQFELQ--RGKIDEAIELFEKSAQLARTE--SEMVHAY 577 (606)
T ss_pred -----hHH------------HHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHhH--HHHHHHH
Confidence 134 156555 5566 999999999999999998866 4444433
No 48
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.63 E-value=4.5e-07 Score=98.16 Aligned_cols=118 Identities=10% Similarity=0.120 Sum_probs=104.3
Q ss_pred CchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHH-HHhcCCCcccch
Q 000307 1047 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLM-YINSRTPLNHRL 1121 (1690)
Q Consensus 1047 n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~m-YINsr~s~ddrl 1121 (1690)
+..+.++.++..|.++|+.+|+++++|+.++.+|...+....|.+.|++|++++|++-. ++.. |...+ .
T Consensus 50 ~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g------~ 123 (198)
T PRK10370 50 ASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAG------Q 123 (198)
T ss_pred cCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC------C
Confidence 35678899999999999999999999999999999999999999999999999999988 4442 34444 0
Q ss_pred HHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1122 DAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1122 ~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
..+++|+++|.+..+.. |+. .++++.|...+.+.|+|++||..+.++..
T Consensus 124 ~~~~~A~~~l~~al~~d-P~~-------~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 124 HMTPQTREMIDKALALD-ANE-------VTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred CCcHHHHHHHHHHHHhC-CCC-------hhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 12699999999988888 888 89999999999999999999999999876
No 49
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.63 E-value=4.8e-05 Score=91.41 Aligned_cols=483 Identities=17% Similarity=0.154 Sum_probs=285.4
Q ss_pred hhhhhchhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCC
Q 000307 1022 NKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNE 1101 (1690)
Q Consensus 1022 n~Le~~~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP 1101 (1690)
-+|...-.+.+.||++|.--..| ..+.-|-+++.|||+.|-.+-.+|..|+.+-++.+..+-|...+-+||..-|
T Consensus 64 d~irrnR~~~~~WikYaqwEesq-----~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lP 138 (677)
T KOG1915|consen 64 DQIRRNRLNMQVWIKYAQWEESQ-----KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILP 138 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcc
Confidence 37777778899999999777666 6689999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhccccc
Q 000307 1102 GSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPAT 1181 (1690)
Q Consensus 1102 ~NY~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al 1181 (1690)
.=..||.-|+-.+ +.+-+-.-|-++|++-..-. ||. ..-+..+.+-...++++-|-..+.|..-
T Consensus 139 RVdqlWyKY~ymE----E~LgNi~gaRqiferW~~w~-P~e--------qaW~sfI~fElRykeieraR~IYerfV~--- 202 (677)
T KOG1915|consen 139 RVDQLWYKYIYME----EMLGNIAGARQIFERWMEWE-PDE--------QAWLSFIKFELRYKEIERARSIYERFVL--- 202 (677)
T ss_pred hHHHHHHHHHHHH----HHhcccHHHHHHHHHHHcCC-CcH--------HHHHHHHHHHHHhhHHHHHHHHHHHHhe---
Confidence 9888998888766 44556777888888877776 663 4456667777778888888776666654
Q ss_pred CCCCcccccHHHHHHHhccCCcc--chhHHHHHHHhhccccHH-----HHhhc----cchhh---hhcCCCCCcccc-hh
Q 000307 1182 GSNDRHSLFLSDILTCLTISDKL--IFWVCCVYLVIYRKLPDA-----VLQLL----ECEKE---LFAIDWPPVQLE-DD 1246 (1690)
Q Consensus 1182 ~G~sE~~lSLsKi~~YLt~sDkc--~AwLc~iYdl~YrvLPGd-----~y~qn----e~~KE---Af~I~W~yvqvl-kd 1246 (1690)
+.|. ++...-|-.-..++ ++-.-.+|+..-..+-.+ +|-.+ +..|| |=.| |.=.+ ..
T Consensus 203 --~HP~---v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~i---ykyAld~~ 274 (677)
T KOG1915|consen 203 --VHPK---VSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFI---YKYALDHI 274 (677)
T ss_pred --eccc---HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhc
Confidence 3441 11122221111111 111112221111110000 00000 00010 0000 00000 01
Q ss_pred hhhhHHHHHHHHHHHHHhhcCCcchhhhh-ccc-ch-----------hHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC
Q 000307 1247 EKQRAIKLIEMAVNSVELYSNGESLEKET-NLR-SA-----------HCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPS 1313 (1690)
Q Consensus 1247 EPdnalAL~smA~dYY~~~~ndEsla~~~-n~k-~d-----------~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~ 1313 (1690)
..+.+.-|+.--+..=.+|...+...... +++ +. -++=..++|..=...+.+.+...+++++.--|.
T Consensus 275 pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp 354 (677)
T KOG1915|consen 275 PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPP 354 (677)
T ss_pred CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCc
Confidence 11222222222111222211111211111 111 11 111112222111122888999999999988887
Q ss_pred cch---------h-HHHHHH--HhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHH----
Q 000307 1314 CLE---------L-VLMKAR--LQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR---- 1377 (1690)
Q Consensus 1314 d~e---------L-~L~Aay--L~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~---- 1377 (1690)
-.+ | .=|+.| |..++ .+-+..||+..|.+=|...=.-.-+|..|+++.+.+.+.+.|.+|+-.
T Consensus 355 ~~ekr~W~RYIYLWinYalyeEle~ed-~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~ 433 (677)
T KOG1915|consen 355 ASEKRYWRRYIYLWINYALYEELEAED-VERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK 433 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc
Confidence 443 2 334555 56666 777889999999999998878888999999999999999999998855
Q ss_pred -----HHHHHhh--hcc-cccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHHHHHH
Q 000307 1378 -----WFHSVWK--VQY-SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAI 1449 (1690)
Q Consensus 1378 -----ff~gia~--~Q~-~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AY 1449 (1690)
.|.+.-. +|. ..+.--.+..+-..- +|.++- ++++-.-.+.+.|+.+.|.+.|
T Consensus 434 cPK~KlFk~YIelElqL~efDRcRkLYEkfle~---------------~Pe~c~----~W~kyaElE~~LgdtdRaRaif 494 (677)
T KOG1915|consen 434 CPKDKLFKGYIELELQLREFDRCRKLYEKFLEF---------------SPENCY----AWSKYAELETSLGDTDRARAIF 494 (677)
T ss_pred CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc---------------ChHhhH----HHHHHHHHHHHhhhHHHHHHHH
Confidence 3333211 111 222111111111111 122222 6777666777788888888888
Q ss_pred HHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHHHHHHhh-----hcccccccc-----------cchhhh
Q 000307 1450 DAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDR-----ARSLPYLKL-----------LPRQFI 1513 (1690)
Q Consensus 1450 DkALk~np~N~~i~cLNNYAYFLSle~~dL~KAEqMS~~~KtVsTYLDT-----AWILf~~~~-----------lARiYI 1513 (1690)
+=|++-.....-+..|.-|.-|=-.++. ..||- ++-..|||+ .||-|.+-. ++..=|
T Consensus 495 elAi~qp~ldmpellwkaYIdFEi~~~E-~ekaR------~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~ 567 (677)
T KOG1915|consen 495 ELAISQPALDMPELLWKAYIDFEIEEGE-FEKAR------ALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEI 567 (677)
T ss_pred HHHhcCcccccHHHHHHHhhhhhhhcch-HHHHH------HHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhc
Confidence 8888777766667888888888554442 22221 233789997 399886533 334444
Q ss_pred ccccchhhHHHHhhhcCC--CCCChhhHHHHHhhc------cC--------CCCccccccccc
Q 000307 1514 NNIERPRLQQLIDNLLSP--VSSDFSLVNLVLEVC------YG--------PSLLPRNFSKLK 1560 (1690)
Q Consensus 1514 ~~i~k~rv~~liDqaL~~--~S~dsS~vNkALE~W------~g--------~slLpqKI~~kK 1560 (1690)
+.--.-|-|+..|.|+.. .+.+-...=..||.| +| .+.+|+||++++
T Consensus 568 ~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk~vKKrr 630 (677)
T KOG1915|consen 568 TDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPKKVKKRR 630 (677)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccHHHHhhh
Confidence 433445677788888766 222222333378889 33 344777776655
No 50
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.55 E-value=1.9e-05 Score=100.02 Aligned_cols=370 Identities=14% Similarity=0.093 Sum_probs=222.0
Q ss_pred hhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH---
Q 000307 1030 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPT-SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--- 1105 (1690)
Q Consensus 1030 d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPt-SAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~--- 1105 (1690)
+++|-+.+|-.+++- |+|..|+.+|.......+. ++.+||-++.+|+.++..++|.+.|++++.++|+|+.
T Consensus 413 ~~dL~~d~a~al~~~-----~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri 487 (895)
T KOG2076|consen 413 DVDLYLDLADALTNI-----GKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARI 487 (895)
T ss_pred hHHHHHHHHHHHHhc-----ccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhh
Confidence 336666666666654 9999999999998877665 5889999999999999999999999999999999999
Q ss_pred -HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCC----cchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc--
Q 000307 1106 -LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD----EMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI-- 1178 (1690)
Q Consensus 1106 -Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pD----r~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq-- 1178 (1690)
|+.+|..++ .-++|++.++++. + +| ...+.-...=+++-++++|-+.|+.++-|.+...|..
T Consensus 488 ~Lasl~~~~g--------~~EkalEtL~~~~--~-~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~ 556 (895)
T KOG2076|consen 488 TLASLYQQLG--------NHEKALETLEQII--N-PDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDF 556 (895)
T ss_pred hHHHHHHhcC--------CHHHHHHHHhccc--C-CCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 999999999 9999999999976 2 55 2222333444568899999999999999887766552
Q ss_pred --c--------------cc---CCCCcccccHHHHHHHhccCCccch--hHHHH--H-HHhhcccc-HH----------H
Q 000307 1179 --P--------------AT---GSNDRHSLFLSDILTCLTISDKLIF--WVCCV--Y-LVIYRKLP-DA----------V 1223 (1690)
Q Consensus 1179 --~--------------Al---~G~sE~~lSLsKi~~YLt~sDkc~A--wLc~i--Y-dl~YrvLP-Gd----------~ 1223 (1690)
. .+ .+-.. ++.-..++.-...+|.-.+ .++.- . -+..+.|. .+ -
T Consensus 557 ~~~~~~f~~~~k~r~~~~~~~~~~~~~-~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~ 635 (895)
T KOG2076|consen 557 LKKRYIFPRNKKKRRRAIAGTTSKRYS-ELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILS 635 (895)
T ss_pred HHHHHhcchHHHHHHHhhccccccccc-hhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHH
Confidence 0 00 00000 1111111111222221111 01100 0 11111111 11 1
Q ss_pred HhhccchhhhhcCCCCCcccc-----hhhhhh--HHHHHHHHHHHHHhhcCCcchhhhh----------cccchhHHHHH
Q 000307 1224 LQLLECEKELFAIDWPPVQLE-----DDEKQR--AIKLIEMAVNSVELYSNGESLEKET----------NLRSAHCFAVN 1286 (1690)
Q Consensus 1224 y~qne~~KEAf~I~W~yvqvl-----kdEPdn--alAL~smA~dYY~~~~ndEsla~~~----------n~k~d~~tKLN 1286 (1690)
+...++..||+.| .-..+ -.+++. -+.-+.++..+|.. +...+-+- +.++-+-+--|
T Consensus 636 L~k~~r~qeAl~v---v~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~---d~~~a~~~lR~~i~~~~~~~~~~q~~l~n 709 (895)
T KOG2076|consen 636 LAKLQRVQEALSV---VFTALEAYIFFQDSEIRKELQFLGLKASLYAR---DPGDAFSYLRSVITQFQFYLDVYQLNLWN 709 (895)
T ss_pred HHHHHhHHHHHHH---HHHHHhhhhhhccHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 2222344444433 10000 001110 11111111122211 11111000 00111111113
Q ss_pred -HHHHHHHhcchHHHHHHHHHHHHhCCCc-chh-HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHH
Q 000307 1287 -HIWCMAVLNGLECSMNLLEKYIKLYPSC-LEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYAL 1363 (1690)
Q Consensus 1287 -~IRq~I~lEdse~al~LfdklLe~~P~d-~eL-~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al 1363 (1690)
.+..++..-.-.+-..++.++|..+|.+ .-+ .+++-++....-=..|+..|-.++...|+++-.-.|+=..+|.+++
T Consensus 710 ~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~ 789 (895)
T KOG2076|consen 710 LDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLAL 789 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH
Confidence 2222222224456677888889999998 444 7888888777766688899999999999999988999888888888
Q ss_pred hcCChhHHHHHHHH---HHHHHhhhcccccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhc
Q 000307 1364 QNGRHDFAAELMDR---WFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQN 1440 (1690)
Q Consensus 1364 ~~e~~d~ai~L~~~---ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg 1440 (1690)
+. .+..+ -+.||+..+. +.+ +| +.. .+|+ .|==||-+||+ -|
T Consensus 790 qr-------~v~~Rh~~i~qG~afL~R-Y~~----lR-----~~~--------------~~QE--a~YNigRayh~--~g 834 (895)
T KOG2076|consen 790 QR-------RVSNRHAQIAQGFAFLKR-YKE----LR-----RCE--------------EKQE--AFYNIGRAYHQ--IG 834 (895)
T ss_pred HH-------HHhhhHHHHHHHHHHHHH-HHH----hh-----ccH--------------HHHH--HHHHHHHHHHH--cc
Confidence 76 23333 4566776643 111 11 000 1222 12357889999 99
Q ss_pred ChHHHHHHHHHHHhhcc
Q 000307 1441 DWNEARLAIDAALKAAA 1457 (1690)
Q Consensus 1441 ~~~EAf~AYDkALk~np 1457 (1690)
-..=|..-|+|||..-|
T Consensus 835 l~~LA~~YYekvL~~~p 851 (895)
T KOG2076|consen 835 LVHLAVSYYEKVLEVSP 851 (895)
T ss_pred cHHHHHHHHHHHhCCCc
Confidence 99999999999999865
No 51
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.54 E-value=1.7e-06 Score=98.32 Aligned_cols=116 Identities=13% Similarity=0.039 Sum_probs=103.0
Q ss_pred CchhhHHHHHHHHHHHHH---hCCCC-HHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcc
Q 000307 1047 NKLEGMKKALSLLSRALE---ADPTS-EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLN 1118 (1690)
Q Consensus 1047 n~~g~yDAALdLLsrALE---INPtS-AeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~d 1118 (1690)
.+.+..+.++.-|+..|+ ++|.. +.+|+.++.+|...+...++...|.+|++++|++.. ++.+|...+
T Consensus 37 ~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g---- 112 (296)
T PRK11189 37 QPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAG---- 112 (296)
T ss_pred CCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC----
Confidence 445778999999999996 44444 788999999999999999999999999999999877 888999999
Q ss_pred cchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1119 HRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1119 drl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
.|++|+..|.+..+.+ |+. .+.++.+..+|...|+++.|+..+.+..+
T Consensus 113 ----~~~~A~~~~~~Al~l~-P~~-------~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 113 ----NFDAAYEAFDSVLELD-PTY-------NYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred ----CHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999998888877 887 78899999999999999999998888775
No 52
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.53 E-value=9.4e-07 Score=86.93 Aligned_cols=106 Identities=13% Similarity=0.148 Sum_probs=97.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHHHHHHHHHH
Q 000307 1057 SLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLC 1132 (1690)
Q Consensus 1057 dLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYdrAI~aLe 1132 (1690)
.+|.++|+.+|+++.+.+.++..|...+...++.++|+++++.+|.+-. +++.|+..+ .|++|+..|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~--------~~~~A~~~~~ 75 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLK--------EYEEAIDAYA 75 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999998766 788888888 9999999998
Q ss_pred HhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1133 RCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1133 ~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
+..... |+. .++.+.+..+|...|++++|+..+.+...
T Consensus 76 ~~~~~~-p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 76 LAAALD-PDD-------PRPYFHAAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHhcC-CCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 877776 887 89999999999999999999999988886
No 53
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.52 E-value=4.5e-06 Score=97.10 Aligned_cols=349 Identities=14% Similarity=0.054 Sum_probs=226.1
Q ss_pred hhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH---
Q 000307 1029 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--- 1105 (1690)
Q Consensus 1029 ~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~--- 1105 (1690)
.|++--+++--..| +-|+|..||.-|-.|+|.||++=.++|--+-.|..++....+..-|++-+++-|+=+.
T Consensus 36 advekhlElGk~ll-----a~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARi 110 (504)
T KOG0624|consen 36 ADVEKHLELGKELL-----ARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHH-----HhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHH
Confidence 34444444443333 3478889999999999999999999999999999999999999999999999986555
Q ss_pred -HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCC----cchhhh--hhHHH--HHHHHHHHhhhcCHHHHHHHHHhh
Q 000307 1106 -LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD----EMHASA--CILDL--FLQMLQCFCMSGNTEKAIQRISRL 1176 (1690)
Q Consensus 1106 -Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pD----r~~~Sa--~ILDv--LL~LvqLY~qSGnydKAI~tL~rL 1176 (1690)
-+.+.+.++ .+++|+.=|-...... |. ++.+|- -|.+- |-+++--+.-+|++..||..|+.|
T Consensus 111 QRg~vllK~G--------ele~A~~DF~~vl~~~-~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 111 QRGVVLLKQG--------ELEQAEADFDQVLQHE-PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred Hhchhhhhcc--------cHHHHHHHHHHHHhcC-CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 567778888 8888888776655544 32 112221 22222 222233344567888888888887
Q ss_pred cccccCCCCcccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHH
Q 000307 1177 LIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIE 1256 (1690)
Q Consensus 1177 Eq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~s 1256 (1690)
+. ..+ .+..++.+-.+-|.--|.++.|+.= ..++.+-.-||.-.+++
T Consensus 182 lE-----i~~-------------------------Wda~l~~~Rakc~i~~~e~k~AI~D---lk~askLs~DnTe~~yk 228 (504)
T KOG0624|consen 182 LE-----IQP-------------------------WDASLRQARAKCYIAEGEPKKAIHD---LKQASKLSQDNTEGHYK 228 (504)
T ss_pred Hh-----cCc-------------------------chhHHHHHHHHHHHhcCcHHHHHHH---HHHHHhccccchHHHHH
Confidence 75 333 3445555666667777777777553 35555666667777777
Q ss_pred HHHHHHHhhcCCcchhhhhcccchhHHHH--HH-------------------HHHHHHhcchHHHHHHHHHHHHhCCCcc
Q 000307 1257 MAVNSVELYSNGESLEKETNLRSAHCFAV--NH-------------------IWCMAVLNGLECSMNLLEKYIKLYPSCL 1315 (1690)
Q Consensus 1257 mA~dYY~~~~ndEsla~~~n~k~d~~tKL--N~-------------------IRq~I~lEdse~al~LfdklLe~~P~d~ 1315 (1690)
++-=+|. +|+-+.+-. .+-.|+|+ .| +.+.|...+++.|+.-.+++|+..|+.+
T Consensus 229 is~L~Y~--vgd~~~sL~---~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~ 303 (504)
T KOG0624|consen 229 ISQLLYT--VGDAENSLK---EIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEET 303 (504)
T ss_pred HHHHHHh--hhhHHHHHH---HHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCccc
Confidence 7655777 555443322 22233333 12 2222222289999999999999999988
Q ss_pred hh-----HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhccccc
Q 000307 1316 EL-----VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQV 1390 (1690)
Q Consensus 1316 eL-----~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ff~gia~~Q~~~d 1390 (1690)
.+ .+.+.--...+-..+|+.++.++|.++|+++. +..+-++..+-.+.||.||.--+. .-....+..
T Consensus 304 ~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~----~l~dRAeA~l~dE~YD~AI~dye~----A~e~n~sn~ 375 (504)
T KOG0624|consen 304 MIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQ----VLCDRAEAYLGDEMYDDAIHDYEK----ALELNESNT 375 (504)
T ss_pred ceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHH----HHHHHHHHHhhhHHHHHHHHHHHH----HHhcCcccH
Confidence 77 23333334444466899999999999999999 666668877777788888765332 111111222
Q ss_pred cc---chhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHHHHHHHH-HHhhccCC
Q 000307 1391 EI---SDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDA-ALKAAASE 1459 (1690)
Q Consensus 1391 eA---LD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDk-ALk~np~N 1459 (1690)
+| ++--++...+. -.-|+| -|||-=. ..+..|-..||-| |.+|-|+|
T Consensus 376 ~~reGle~Akrlkkqs-------~kRDYY-----------KILGVkR----nAsKqEI~KAYRKlAqkWHPDN 426 (504)
T KOG0624|consen 376 RAREGLERAKRLKKQS-------GKRDYY-----------KILGVKR----NASKQEITKAYRKLAQKWHPDN 426 (504)
T ss_pred HHHHHHHHHHHHHHHh-------ccchHH-----------HHhhhcc----cccHHHHHHHHHHHHHhcCCcc
Confidence 22 22222222222 236888 8888632 3467788889988 56999999
No 54
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.44 E-value=2.6e-06 Score=92.43 Aligned_cols=107 Identities=13% Similarity=0.169 Sum_probs=95.0
Q ss_pred hhhhhchhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHhCCC--CchHHHHHHHHHh
Q 000307 1022 NKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLI-FYSNTN--SVGKDDMFSYSVK 1098 (1690)
Q Consensus 1022 n~Le~~~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~l-Y~~~~~--~~ea~emfekAVe 1098 (1690)
..|+..|.+.++|+.|+..++.. |+++.|+..|.+|++++|+++.+|+.|+.. |+..+. ..++.+++++|++
T Consensus 64 ~~L~~~P~~~~~w~~Lg~~~~~~-----g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~ 138 (198)
T PRK10370 64 DKIRANPQNSEQWALLGEYYLWR-----NDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALA 138 (198)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 46777889999999999988876 788999999999999999999999999995 566666 4899999999999
Q ss_pred cCCCCHH----HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCC
Q 000307 1099 HNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD 1141 (1690)
Q Consensus 1099 laP~NY~----Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pD 1141 (1690)
.+|++-. |+..|...+ .|++|+..|+.+.....++
T Consensus 139 ~dP~~~~al~~LA~~~~~~g--------~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 139 LDANEVTALMLLASDAFMQA--------DYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred hCCCChhHHHHHHHHHHHcC--------CHHHHHHHHHHHHhhCCCC
Confidence 9999877 889999999 9999999999988877333
No 55
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.43 E-value=5.1e-06 Score=89.39 Aligned_cols=172 Identities=12% Similarity=0.044 Sum_probs=123.1
Q ss_pred hhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH
Q 000307 1029 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSE---ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1105 (1690)
Q Consensus 1029 ~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSA---eaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~ 1105 (1690)
...+.++.+|..++.. |+++.|+..|.+.++.+|+++ .+|+.++.+|...++..+|.+.|+++++..|++..
T Consensus 31 ~~~~~~~~~g~~~~~~-----~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 105 (235)
T TIGR03302 31 WPAEELYEEAKEALDS-----GDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD 105 (235)
T ss_pred CCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence 4448889998888775 788999999999999999987 68999999999999999999999999999997664
Q ss_pred -------HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhh----------hHHHHHHHHHHHhhhcCHHH
Q 000307 1106 -------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASAC----------ILDLFLQMLQCFCMSGNTEK 1168 (1690)
Q Consensus 1106 -------Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~----------ILDvLL~LvqLY~qSGnydK 1168 (1690)
++..|.+.........-.+++|++.|.+....+ |+....-.. +....+.+..+|...|++++
T Consensus 106 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 184 (235)
T TIGR03302 106 ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVA 184 (235)
T ss_pred hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence 455555542222223347999999999999888 664211110 11223467889999999999
Q ss_pred HHHHHHhhcccccCCCCcccccHHHHHHHhccCCccch
Q 000307 1169 AIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIF 1206 (1690)
Q Consensus 1169 AI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~A 1206 (1690)
||..+.++....-++.............|...+|...|
T Consensus 185 A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A 222 (235)
T TIGR03302 185 AINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLA 222 (235)
T ss_pred HHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHH
Confidence 99988887751111111112333445566666666555
No 56
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.42 E-value=1.7e-06 Score=89.06 Aligned_cols=103 Identities=16% Similarity=0.152 Sum_probs=75.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHHHHHHHHHH
Q 000307 1057 SLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLC 1132 (1690)
Q Consensus 1057 dLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYdrAI~aLe 1132 (1690)
.+|.+||++||++ |+.++..+.+++...++.++|.+|+.++|+++. ++.++...+ .|++|+..|.
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g--------~~~~A~~~y~ 82 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLK--------EYTTAINFYG 82 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh--------hHHHHHHHHH
Confidence 5677777777775 556677777777777777777777777777776 666677777 7777777777
Q ss_pred HhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1133 RCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1133 ~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
+..+.. |+. -+.++.+..+|...|++++||..+.+...
T Consensus 83 ~Al~l~-p~~-------~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 83 HALMLD-ASH-------PEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHhcC-CCC-------cHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777666 665 67777777777777777777777766654
No 57
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.41 E-value=4.1e-05 Score=90.55 Aligned_cols=283 Identities=12% Similarity=0.117 Sum_probs=183.7
Q ss_pred HHHHhCCCCchHHHHHHHHHhcC--CCCHH-HH-HHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHH
Q 000307 1078 LIFYSNTNSVGKDDMFSYSVKHN--EGSYA-LW-LMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLF 1153 (1690)
Q Consensus 1078 ~lY~~~~~~~ea~emfekAVela--P~NY~-Lw-~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvL 1153 (1690)
.+.+.-|+-..+..++.++-+.. |.-|. ++ ......+ ++++|...|.++++.. |+. . +-..
T Consensus 92 l~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g--------~~~~A~~~l~~A~~~~-~~~--~----~~~~ 156 (398)
T PRK10747 92 LLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRG--------DEARANQHLERAAELA-DND--Q----LPVE 156 (398)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHhcC-Ccc--h----HHHH
Confidence 34444566667777888877764 22222 43 4447888 9999999999988876 664 0 2333
Q ss_pred HHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhh
Q 000307 1154 LQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKEL 1233 (1690)
Q Consensus 1154 L~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEA 1233 (1690)
+..++++..+|++++|++.+.++.. ....++ .. ..+...+|++.|...++
T Consensus 157 l~~a~l~l~~g~~~~Al~~l~~~~~--~~P~~~-~a---------------------------l~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 157 ITRVRIQLARNENHAARHGVDKLLE--VAPRHP-EV---------------------------LRLAEQAYIRTGAWSSL 206 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCH-HH---------------------------HHHHHHHHHHHHhHHHH
Confidence 4458999999999999999999886 333333 11 22334444555555555
Q ss_pred hcCCCCCcccchh---hhhhHH-----HHHHHHHHHHHhhcCCcchhhhh------cccchhHHHHHHHHHHHHhcchHH
Q 000307 1234 FAIDWPPVQLEDD---EKQRAI-----KLIEMAVNSVELYSNGESLEKET------NLRSAHCFAVNHIWCMAVLNGLEC 1299 (1690)
Q Consensus 1234 f~I~W~yvqvlkd---EPdnal-----AL~smA~dYY~~~~ndEsla~~~------n~k~d~~tKLN~IRq~I~lEdse~ 1299 (1690)
..+ +.++.+. +|+..- +...+. ..... ..+....... ..+.+...-+.+.+.++...+.+.
T Consensus 207 ~~~---l~~l~k~~~~~~~~~~~l~~~a~~~l~-~~~~~-~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~ 281 (398)
T PRK10747 207 LDI---LPSMAKAHVGDEEHRAMLEQQAWIGLM-DQAMA-DQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDT 281 (398)
T ss_pred HHH---HHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHHH-hcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHH
Confidence 544 3333221 222111 111111 11111 0011111110 112223344466677777779999
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 000307 1300 SMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWF 1379 (1690)
Q Consensus 1300 al~LfdklLe~~P~d~eL~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ff 1379 (1690)
|..++.+.++. |.+.++.+.-+++...+ ++.++...+..++..|+++. .+..+...++..++|++|.+.+++
T Consensus 282 A~~~L~~~l~~-~~~~~l~~l~~~l~~~~-~~~al~~~e~~lk~~P~~~~----l~l~lgrl~~~~~~~~~A~~~le~-- 353 (398)
T PRK10747 282 AQQIILDGLKR-QYDERLVLLIPRLKTNN-PEQLEKVLRQQIKQHGDTPL----LWSTLGQLLMKHGEWQEASLAFRA-- 353 (398)
T ss_pred HHHHHHHHHhc-CCCHHHHHHHhhccCCC-hHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHH--
Confidence 99999999995 55778866666666655 77889999999999999999 999999999999999999988855
Q ss_pred HHHhhhcccccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhcc
Q 000307 1380 HSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAA 1457 (1690)
Q Consensus 1380 ~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np 1457 (1690)
++. ..+ | +..+..|+.++-+ .|+.++|...|.++|....
T Consensus 354 ------------al~--------~~P--------~---------~~~~~~La~~~~~--~g~~~~A~~~~~~~l~~~~ 392 (398)
T PRK10747 354 ------------ALK--------QRP--------D---------AYDYAWLADALDR--LHKPEEAAAMRRDGLMLTL 392 (398)
T ss_pred ------------HHh--------cCC--------C---------HHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhhc
Confidence 111 111 1 0122689999999 9999999999999997653
No 58
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.38 E-value=4.2e-06 Score=93.61 Aligned_cols=147 Identities=16% Similarity=0.135 Sum_probs=115.9
Q ss_pred HHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HH
Q 000307 1032 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LW 1107 (1690)
Q Consensus 1032 qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw 1107 (1690)
+.-|.||+.||++ |++.+|..-|..||++||++.-+|..++.||...+..+.++++|++|+.++|+|=. .+
T Consensus 36 ~arlqLal~YL~~-----gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG 110 (250)
T COG3063 36 KARLQLALGYLQQ-----GDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhh
Confidence 6779999999999 88999999999999999999999999999999999999999999999999999877 33
Q ss_pred HHHHhcCCCcccchHHHHHHHHHHHHhhhc--CCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCC
Q 000307 1108 LMYINSRTPLNHRLDAYDAALSVLCRCASA--SDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND 1185 (1690)
Q Consensus 1108 ~mYINsr~s~ddrl~aYdrAI~aLe~las~--~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~s 1185 (1690)
|+.-.++ .|+.|.+.|++.... + +.. -|++.-+.-|-.++|..+.|-..+.|=+. ++-..
T Consensus 111 ~FLC~qg--------~~~eA~q~F~~Al~~P~Y-~~~-------s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~ 172 (250)
T COG3063 111 AFLCAQG--------RPEEAMQQFERALADPAY-GEP-------SDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQF 172 (250)
T ss_pred HHHHhCC--------ChHHHHHHHHHHHhCCCC-CCc-------chhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCC
Confidence 3334455 588888888665442 2 334 78899999999999999999887777664 33344
Q ss_pred cccccHHHHHHHhccCC
Q 000307 1186 RHSLFLSDILTCLTISD 1202 (1690)
Q Consensus 1186 E~~lSLsKi~~YLt~sD 1202 (1690)
+ ...++..+.+...+|
T Consensus 173 ~-~~~l~~a~~~~~~~~ 188 (250)
T COG3063 173 P-PALLELARLHYKAGD 188 (250)
T ss_pred C-hHHHHHHHHHHhccc
Confidence 3 334444444444443
No 59
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.32 E-value=6.2e-06 Score=88.76 Aligned_cols=128 Identities=14% Similarity=0.155 Sum_probs=109.1
Q ss_pred HHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHhC--------CCCchHHHHHHHHHhcC
Q 000307 1032 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEI---LWITYLLIFYSN--------TNSVGKDDMFSYSVKHN 1100 (1690)
Q Consensus 1032 qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAe---aWyeyl~lY~~~--------~~~~ea~emfekAVela 1100 (1690)
+.|+.+|..++.. +++++|+..|.++++.+|+++. +||.++.+|+.. +...++...|.++++..
T Consensus 71 ~a~~~la~~~~~~-----~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 145 (235)
T TIGR03302 71 QAQLDLAYAYYKS-----GDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY 145 (235)
T ss_pred HHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC
Confidence 6788888877766 7899999999999999998887 799999999876 56778999999999999
Q ss_pred CCCH---------------------HHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHH
Q 000307 1101 EGSY---------------------ALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQC 1159 (1690)
Q Consensus 1101 P~NY---------------------~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqL 1159 (1690)
|++- .++.+|+..+ .|.+|+..|.+....+ |+. ....+.++.+..+
T Consensus 146 p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g--------~~~~A~~~~~~al~~~-p~~----~~~~~a~~~l~~~ 212 (235)
T TIGR03302 146 PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRG--------AYVAAINRFETVVENY-PDT----PATEEALARLVEA 212 (235)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHHC-CCC----cchHHHHHHHHHH
Confidence 9983 2466788888 8999999999988876 432 3347899999999
Q ss_pred HhhhcCHHHHHHHHHhhc
Q 000307 1160 FCMSGNTEKAIQRISRLL 1177 (1690)
Q Consensus 1160 Y~qSGnydKAI~tL~rLE 1177 (1690)
|...|++++|+..+..|.
T Consensus 213 ~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 213 YLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 999999999999887776
No 60
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.25 E-value=7.2e-05 Score=87.13 Aligned_cols=262 Identities=17% Similarity=0.134 Sum_probs=186.1
Q ss_pred chHHHHHHHHHhcCCCCHHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCH
Q 000307 1087 VGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNT 1166 (1690)
Q Consensus 1087 ~ea~emfekAVelaP~NY~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGny 1166 (1690)
...++-...|-++. ..|.-+..|+=++ .=|+|+..|-+++... +.. .|+=+-|..||.+-|.+
T Consensus 23 saqq~~~~qa~~ls-r~Yv~GlNfLLs~--------Q~dKAvdlF~e~l~~d-~~t-------~e~~ltLGnLfRsRGEv 85 (389)
T COG2956 23 SAQQDKQDQANRLS-RDYVKGLNFLLSN--------QPDKAVDLFLEMLQED-PET-------FEAHLTLGNLFRSRGEV 85 (389)
T ss_pred HHHhhHHHHHhhcc-HHHHhHHHHHhhc--------CcchHHHHHHHHHhcC-chh-------hHHHHHHHHHHHhcchH
Confidence 34455566666666 8899888888888 7899999999998876 777 89999999999999999
Q ss_pred HHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchh
Q 000307 1167 EKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDD 1246 (1690)
Q Consensus 1167 dKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkd 1246 (1690)
|.||..=..|. .++ +++
T Consensus 86 DRAIRiHQ~L~------~sp-dlT-------------------------------------------------------- 102 (389)
T COG2956 86 DRAIRIHQTLL------ESP-DLT-------------------------------------------------------- 102 (389)
T ss_pred HHHHHHHHHHh------cCC-CCc--------------------------------------------------------
Confidence 99998555554 355 333
Q ss_pred hhhhHHHHHHHHHHHHHhhcCCcchhhhh-c-ccchhHHHHHHHHHHHH-hc---chHHHHHHHHHHHHhCCCcchh---
Q 000307 1247 EKQRAIKLIEMAVNSVELYSNGESLEKET-N-LRSAHCFAVNHIWCMAV-LN---GLECSMNLLEKYIKLYPSCLEL--- 1317 (1690)
Q Consensus 1247 EPdnalAL~smA~dYY~~~~ndEsla~~~-n-~k~d~~tKLN~IRq~I~-lE---dse~al~LfdklLe~~P~d~eL--- 1317 (1690)
.-+.++|++++|-||..+..- +-++.. . .--+.+++.+-+++++. .+ +++.|++...++++..|..-.+
T Consensus 103 ~~qr~lAl~qL~~Dym~aGl~--DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIA 180 (389)
T COG2956 103 FEQRLLALQQLGRDYMAAGLL--DRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIA 180 (389)
T ss_pred hHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHH
Confidence 123344555555555543111 111111 1 11225566666666665 33 9999999999999999887554
Q ss_pred ----HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcccccccc
Q 000307 1318 ----VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEIS 1393 (1690)
Q Consensus 1318 ----~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ff~gia~~Q~~~deAL 1393 (1690)
+|.-.++...+ .+.|+..+.+||+.+|+.+. +=+++...++.+|++..|++..++
T Consensus 181 qfyCELAq~~~~~~~-~d~A~~~l~kAlqa~~~cvR----Asi~lG~v~~~~g~y~~AV~~~e~---------------- 239 (389)
T COG2956 181 QFYCELAQQALASSD-VDRARELLKKALQADKKCVR----ASIILGRVELAKGDYQKAVEALER---------------- 239 (389)
T ss_pred HHHHHHHHHHhhhhh-HHHHHHHHHHHHhhCcccee----hhhhhhHHHHhccchHHHHHHHHH----------------
Confidence 44445566666 66788999999999999999 999999999999999999998866
Q ss_pred hhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhccCCcHHHHHHHHHHHHh
Q 000307 1394 DPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLL 1473 (1690)
Q Consensus 1394 D~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLS 1473 (1690)
+ .+-|+++++++. ..|--||++ .|+.+|...-.-+|...+++-..+.++ |=+.+.
T Consensus 240 ---------v-~eQn~~yl~evl-----------~~L~~~Y~~--lg~~~~~~~fL~~~~~~~~g~~~~l~l--~~lie~ 294 (389)
T COG2956 240 ---------V-LEQNPEYLSEVL-----------EMLYECYAQ--LGKPAEGLNFLRRAMETNTGADAELML--ADLIEL 294 (389)
T ss_pred ---------H-HHhChHHHHHHH-----------HHHHHHHHH--hCCHHHHHHHHHHHHHccCCccHHHHH--HHHHHH
Confidence 1 233455556655 667778888 888888888888888888876344333 334444
Q ss_pred cCC
Q 000307 1474 INE 1476 (1690)
Q Consensus 1474 le~ 1476 (1690)
.+|
T Consensus 295 ~~G 297 (389)
T COG2956 295 QEG 297 (389)
T ss_pred hhC
Confidence 444
No 61
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.23 E-value=2.6e-06 Score=75.75 Aligned_cols=67 Identities=15% Similarity=0.245 Sum_probs=63.3
Q ss_pred hhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHhcCC
Q 000307 1030 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNT-NSVGKDDMFSYSVKHNE 1101 (1690)
Q Consensus 1030 d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~-~~~ea~emfekAVelaP 1101 (1690)
+.+.|..+|..++.. ++|+.|+..|.+||++||+++.+|+.++.+|..++ ...++..+|++|++++|
T Consensus 2 ~a~~~~~~g~~~~~~-----~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQ-----GDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHT-----THHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 457899999999887 88999999999999999999999999999999999 68999999999999998
No 62
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.20 E-value=5.8e-06 Score=101.94 Aligned_cols=138 Identities=15% Similarity=0.127 Sum_probs=124.8
Q ss_pred cccccccccchhhhhhhhhchhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCc
Q 000307 1008 NRQSSFFRSRNGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSV 1087 (1690)
Q Consensus 1008 ~~~~rYF~~~~d~in~Le~~~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ 1087 (1690)
.+-..||+ +-|.-.+....+|-=|-.-|+-| |+++.|.--|++|++|||.+.++.++++.+|.++|..+
T Consensus 472 d~a~~~fr------~Al~~~~rhYnAwYGlG~vy~Kq-----ek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d 540 (638)
T KOG1126|consen 472 DKAMKSFR------KALGVDPRHYNAWYGLGTVYLKQ-----EKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKD 540 (638)
T ss_pred HhHHHHHH------hhhcCCchhhHHHHhhhhheecc-----chhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhh
Confidence 34455777 56667778889999999999887 78899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhh
Q 000307 1088 GKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMS 1163 (1690)
Q Consensus 1088 ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qS 1163 (1690)
+|+++|++|+.++|-|-- -+..+...+ .|++|+..||++-+-- |+. .-++..|...|.+-
T Consensus 541 ~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~--------~~~eal~~LEeLk~~v-P~e-------s~v~~llgki~k~~ 604 (638)
T KOG1126|consen 541 KALQLYEKAIHLDPKNPLCKYHRASILFSLG--------RYVEALQELEELKELV-PQE-------SSVFALLGKIYKRL 604 (638)
T ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhhc--------chHHHHHHHHHHHHhC-cch-------HHHHHHHHHHHHHH
Confidence 999999999999999854 888888999 9999999999998888 888 88999999999999
Q ss_pred cCHHHHHHH
Q 000307 1164 GNTEKAIQR 1172 (1690)
Q Consensus 1164 GnydKAI~t 1172 (1690)
|+.+.|+--
T Consensus 605 ~~~~~Al~~ 613 (638)
T KOG1126|consen 605 GNTDLALLH 613 (638)
T ss_pred ccchHHHHh
Confidence 999999873
No 63
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.18 E-value=1.6e-05 Score=81.98 Aligned_cols=95 Identities=8% Similarity=-0.081 Sum_probs=84.4
Q ss_pred HHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHH
Q 000307 1034 CVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLM 1109 (1690)
Q Consensus 1034 Wl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~m 1109 (1690)
|..+|..+.. .|+++.|+..|.+++.++|.++.+|+.++.++...+...+|.+.|++|++++|++.. ++..
T Consensus 27 ~~~~g~~~~~-----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~ 101 (144)
T PRK15359 27 VYASGYASWQ-----EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVC 101 (144)
T ss_pred HHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 5555555443 488999999999999999999999999999999999999999999999999999977 7889
Q ss_pred HHhcCCCcccchHHHHHHHHHHHHhhhcCCCCc
Q 000307 1110 YINSRTPLNHRLDAYDAALSVLCRCASASDGDE 1142 (1690)
Q Consensus 1110 YINsr~s~ddrl~aYdrAI~aLe~las~~~pDr 1142 (1690)
|...+ .+++|+..|....+.. |+.
T Consensus 102 l~~~g--------~~~eAi~~~~~Al~~~-p~~ 125 (144)
T PRK15359 102 LKMMG--------EPGLAREAFQTAIKMS-YAD 125 (144)
T ss_pred HHHcC--------CHHHHHHHHHHHHHhC-CCC
Confidence 99999 9999999998887776 665
No 64
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.16 E-value=1.9e-05 Score=77.84 Aligned_cols=104 Identities=14% Similarity=0.091 Sum_probs=89.9
Q ss_pred hhchhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCH
Q 000307 1025 KQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY 1104 (1690)
Q Consensus 1025 e~~~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY 1104 (1690)
+..|.+...=+.+|..++.. |+++.|...|.++++++|+++.+|+.++.+|+..+....+..+|++|++.+|++.
T Consensus 11 ~~~p~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 85 (135)
T TIGR02552 11 GLDSEQLEQIYALAYNLYQQ-----GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDP 85 (135)
T ss_pred cCChhhHHHHHHHHHHHHHc-----ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 34445555666777777665 7899999999999999999999999999999999999999999999999999986
Q ss_pred H----HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCc
Q 000307 1105 A----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDE 1142 (1690)
Q Consensus 1105 ~----Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr 1142 (1690)
. ++..|...+ .+++|+..|....... |+.
T Consensus 86 ~~~~~la~~~~~~g--------~~~~A~~~~~~al~~~-p~~ 118 (135)
T TIGR02552 86 RPYFHAAECLLALG--------EPESALKALDLAIEIC-GEN 118 (135)
T ss_pred HHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhc-ccc
Confidence 6 788999999 9999999998877776 654
No 65
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.14 E-value=6.2e-05 Score=97.25 Aligned_cols=274 Identities=11% Similarity=0.036 Sum_probs=181.5
Q ss_pred cCCCCHH----HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHH
Q 000307 1099 HNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRIS 1174 (1690)
Q Consensus 1099 laP~NY~----Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~ 1174 (1690)
++|.|+. |...|+..+ .|++|++..+.+.+.+ |+. +.+++++.-||.+.+++++|..+
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~--------~~deai~i~~~~l~~~-P~~-------i~~yy~~G~l~~q~~~~~~~~lv-- 87 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSEN--------LTDEAKDICEEHLKEH-KKS-------ISALYISGILSLSRRPLNDSNLL-- 87 (906)
T ss_pred CCcchHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHhC-Ccc-------eehHHHHHHHHHhhcchhhhhhh--
Confidence 5566666 778888888 9999999998888887 998 89999999999999999999775
Q ss_pred hhcccccCCCCcccccHHHHHHHhccCCccchh-HHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHH
Q 000307 1175 RLLIPATGSNDRHSLFLSDILTCLTISDKLIFW-VCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIK 1253 (1690)
Q Consensus 1175 rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~Aw-Lc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalA 1253 (1690)
++.. +-..+.+. .+..|+.. |+.. .-..| .+ .-+|..|...|..++++.+ |.++++-+|+|+.+
T Consensus 88 ~~l~--~~~~~~~~----~~ve~~~~---~i~~~~~~k~--Al-~~LA~~Ydk~g~~~ka~~~---yer~L~~D~~n~~a 152 (906)
T PRK14720 88 NLID--SFSQNLKW----AIVEHICD---KILLYGENKL--AL-RTLAEAYAKLNENKKLKGV---WERLVKADRDNPEI 152 (906)
T ss_pred hhhh--hcccccch----hHHHHHHH---HHHhhhhhhH--HH-HHHHHHHHHcCChHHHHHH---HHHHHhcCcccHHH
Confidence 4443 22222211 22223221 1110 00001 11 1368889999999999999 99999999999999
Q ss_pred HHHHHHHHHHhhcCCcchhhhhcccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCcchhHHHHHHHhhccCCCcc
Q 000307 1254 LIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLS 1333 (1690)
Q Consensus 1254 L~smA~dYY~~~~ndEsla~~~n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d~eL~L~AayL~~k~m~e~A 1333 (1690)
|=-+| .+|+. . +.+.|+.|..++++. |+..++ ..+.
T Consensus 153 LNn~A-Y~~ae-~-----------------------------dL~KA~~m~~KAV~~------------~i~~kq-~~~~ 188 (906)
T PRK14720 153 VKKLA-TSYEE-E-----------------------------DKEKAITYLKKAIYR------------FIKKKQ-YVGI 188 (906)
T ss_pred HHHHH-HHHHH-h-----------------------------hHHHHHHHHHHHHHH------------HHhhhc-chHH
Confidence 99997 55553 0 345666666666665 565555 6667
Q ss_pred HHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcccccccchhhcccCCCCCCCCCCCCCc
Q 000307 1334 SVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDP 1413 (1690)
Q Consensus 1334 i~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vS 1413 (1690)
..+|++++..+|++.. .+.++++-....-+...++.++.+-|..+-. .+..++++.+|+....+-+ .
T Consensus 189 ~e~W~k~~~~~~~d~d----~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~-~~~~~~~i~iLK~iL~~~~--------~ 255 (906)
T PRK14720 189 EEIWSKLVHYNSDDFD----FFLRIERKVLGHREFTRLVGLLEDLYEPYKA-LEDWDEVIYILKKILEHDN--------K 255 (906)
T ss_pred HHHHHHHHhcCcccch----HHHHHHHHHHhhhccchhHHHHHHHHHHHhh-hhhhhHHHHHHHHHHhcCC--------c
Confidence 7888888888888888 8888888777776677777776663332211 1256678888876554432 2
Q ss_pred ccccccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhcc----CCcHHHHHHHHHHHHhcCC
Q 000307 1414 EFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAA----SEHFKHCVREHAMLLLINE 1476 (1690)
Q Consensus 1414 Dfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np----~N~~i~cLNNYAYFLSle~ 1476 (1690)
+++ +.-+++.+- .+.+.+ ..-++.+|+..- ...|..|+.+|--++++..
T Consensus 256 n~~-----------a~~~l~~~y--~~kY~~-~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i~f~~ 308 (906)
T PRK14720 256 NNK-----------AREELIRFY--KEKYKD-HSLLEDYLKMSDIGNNRKPVKDCIADFEKNIVFDT 308 (906)
T ss_pred chh-----------hHHHHHHHH--HHHccC-cchHHHHHHHhccccCCccHHHHHHHHHHHeeecC
Confidence 555 444543333 333333 556666665543 1346788888877776643
No 66
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.13 E-value=0.00017 Score=90.71 Aligned_cols=306 Identities=20% Similarity=0.109 Sum_probs=184.7
Q ss_pred HHHHHHHHHHhcccc-Cc---hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH--
Q 000307 1032 EQCVEMALLILNQDA-NK---LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-- 1105 (1690)
Q Consensus 1032 qlWl~lAl~~Lnq~~-n~---~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~-- 1105 (1690)
++.+-.||.-..-.+ ++ .....+++..|.+|++.+|+++-+.|+++.-|.-+.+-..|.+.++.|.++++..-.
T Consensus 436 ~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~ 515 (799)
T KOG4162|consen 436 YLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKA 515 (799)
T ss_pred HHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHH
Confidence 666777766665555 44 344789999999999999999999999999999999999999999999999766665
Q ss_pred ---HHHHHHhcCCCcccchHHHHHHHHHHHH---------hhh-cCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHH
Q 000307 1106 ---LWLMYINSRTPLNHRLDAYDAALSVLCR---------CAS-ASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQR 1172 (1690)
Q Consensus 1106 ---Lw~mYINsr~s~ddrl~aYdrAI~aLe~---------las-~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~t 1172 (1690)
|+.+.--++ ++.+.+..-+.|++-+.. +.+ .+ .|+ -..+|+...++.|.-..--++.++.
T Consensus 516 whLLALvlSa~k-r~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~-~~~----e~~l~t~~~~L~~we~~~~~q~~~~- 588 (799)
T KOG4162|consen 516 WHLLALVLSAQK-RLKEALDVVDAALEEFGDNHVLMDGKIHIELTF-NDR----EEALDTCIHKLALWEAEYGVQQTLD- 588 (799)
T ss_pred HHHHHHHHhhhh-hhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhc-ccH----HHHHHHHHHHHHHHHhhhhHhhhhh-
Confidence 444444555 556666666666655533 000 11 222 1347777777777765544444433
Q ss_pred HHhhcccccCCCCcccccHHHHHHHhccCCccchhHHHHH---HHhhccccHHHHhhccchhhh---hcCCCCCcccchh
Q 000307 1173 ISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY---LVIYRKLPDAVLQLLECEKEL---FAIDWPPVQLEDD 1246 (1690)
Q Consensus 1173 L~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iY---dl~YrvLPGd~y~qne~~KEA---f~I~W~yvqvlkd 1246 (1690)
+ |.-++ .|-...++.++...+-=.+.| ++. -++. +.+..... -.++||-.--...
T Consensus 589 --~-------g~~~~----lk~~l~la~~q~~~a~s~sr~ls~l~a---~~~~---~~~se~~Lp~s~~~~~~~~~~~~~ 649 (799)
T KOG4162|consen 589 --E-------GKLLR----LKAGLHLALSQPTDAISTSRYLSSLVA---SQLK---SAGSELKLPSSTVLPGPDSLWYLL 649 (799)
T ss_pred --h-------hhhhh----hhcccccCcccccccchhhHHHHHHHH---hhhh---hcccccccCcccccCCCCchHHHH
Confidence 1 11111 122345566666555333333 222 1111 11111111 1133332211111
Q ss_pred hhhhHHHHHHHHHHHHHhhcCCcchhhhh--cccch-hHHHHHHHHHHH--HhcchHHHHHHHHHHHHhCCCcchh--HH
Q 000307 1247 EKQRAIKLIEMAVNSVELYSNGESLEKET--NLRSA-HCFAVNHIWCMA--VLNGLECSMNLLEKYIKLYPSCLEL--VL 1319 (1690)
Q Consensus 1247 EPdnalAL~smA~dYY~~~~ndEsla~~~--n~k~d-~~tKLN~IRq~I--~lEdse~al~LfdklLe~~P~d~eL--~L 1319 (1690)
..+-.+|++++..+-+++..-.-. -.++. -+--+-.++... ...-.++|...|...+.+.|.++.. .|
T Consensus 650 -----~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Al 724 (799)
T KOG4162|consen 650 -----QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTAL 724 (799)
T ss_pred -----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 333345566666534433321000 01111 111111122111 1337889999999999999999999 55
Q ss_pred HHHHHhhccCCCccHH--HHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHH
Q 000307 1320 MKARLQKHDFGDLSSV--GFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAE 1373 (1690)
Q Consensus 1320 ~AayL~~k~m~e~Ai~--vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~ 1373 (1690)
...+++... +.-+.. ++..++.++|.|.. +|++|...+-..|+.+.|.+
T Consensus 725 a~~lle~G~-~~la~~~~~L~dalr~dp~n~e----aW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 725 AELLLELGS-PRLAEKRSLLSDALRLDPLNHE----AWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred HHHHHHhCC-cchHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHccchHHHHH
Confidence 555565554 555555 89999999999999 99999999999999997654
No 67
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.05 E-value=0.0005 Score=78.05 Aligned_cols=127 Identities=16% Similarity=0.064 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHH---HHHHHHhCCCCchHHHHHHHHHhcCCCCHH--
Q 000307 1031 NEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWIT---YLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-- 1105 (1690)
Q Consensus 1031 ~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWye---yl~lY~~~~~~~ea~emfekAVelaP~NY~-- 1105 (1690)
.+.+.-.|+..... |+++.|+.++.++|+.+|++..+|.. +.......+....+...++.+....|...+
T Consensus 43 ~e~~~~~a~~~~~~-----g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 117 (355)
T cd05804 43 RERAHVEALSAWIA-----GDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLL 117 (355)
T ss_pred HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHH
Confidence 35555555555444 67889999999999999999988874 222222233333344444444466666655
Q ss_pred --HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1106 --LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1106 --Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
++..|...+ .|++|+..+++..... |+. ......+.++|.+.|++++|+..+.+...
T Consensus 118 ~~~a~~~~~~G--------~~~~A~~~~~~al~~~-p~~-------~~~~~~la~i~~~~g~~~eA~~~l~~~l~ 176 (355)
T cd05804 118 GMLAFGLEEAG--------QYDRAEEAARRALELN-PDD-------AWAVHAVAHVLEMQGRFKEGIAFMESWRD 176 (355)
T ss_pred HHHHHHHHHcC--------CHHHHHHHHHHHHhhC-CCC-------cHHHHHHHHHHHHcCCHHHHHHHHHhhhh
Confidence 566888888 8999999999988887 666 66788899999999999999998877664
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.04 E-value=0.00083 Score=83.56 Aligned_cols=113 Identities=16% Similarity=0.157 Sum_probs=103.6
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHHH
Q 000307 1050 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1125 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYd 1125 (1690)
++|.+.|.+.+.-|+-.|+-.+-+-.-+.....++...+|.++++.|+..++.++. ++.+|-+-+ .|+
T Consensus 21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK--------~Y~ 92 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK--------KYD 92 (700)
T ss_pred HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh--------hHH
Confidence 67899999999999999999999999999999999999999999999999999998 777788888 999
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1126 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1126 rAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
+||..|-+.-.-. +|+ +.++--|.-|-.|-|+|+-...+-+++++
T Consensus 93 eaiKcy~nAl~~~-~dN-------~qilrDlslLQ~QmRd~~~~~~tr~~LLq 137 (700)
T KOG1156|consen 93 EAIKCYRNALKIE-KDN-------LQILRDLSLLQIQMRDYEGYLETRNQLLQ 137 (700)
T ss_pred HHHHHHHHHHhcC-CCc-------HHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 9999996666665 999 99999999999999999999999999997
No 69
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.03 E-value=3.8e-05 Score=65.63 Aligned_cols=93 Identities=16% Similarity=0.221 Sum_probs=81.2
Q ss_pred HHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHH
Q 000307 1033 QCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWL 1108 (1690)
Q Consensus 1033 lWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~ 1108 (1690)
.|..+|..++.+ |+++.|+.+|.++++.+|.+..+|+.++.+|...+....+.++|+++++..|.+.. ++.
T Consensus 2 ~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 76 (100)
T cd00189 2 ALLNLGNLYYKL-----GDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGL 76 (100)
T ss_pred HHHHHHHHHHHH-----hcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHH
Confidence 467777777664 78999999999999999999999999999999999999999999999999998865 678
Q ss_pred HHHhcCCCcccchHHHHHHHHHHHHhhhcC
Q 000307 1109 MYINSRTPLNHRLDAYDAALSVLCRCASAS 1138 (1690)
Q Consensus 1109 mYINsr~s~ddrl~aYdrAI~aLe~las~~ 1138 (1690)
+|...+ .+++|+..+.......
T Consensus 77 ~~~~~~--------~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 77 AYYKLG--------KYEEALEAYEKALELD 98 (100)
T ss_pred HHHHHH--------hHHHHHHHHHHHHccC
Confidence 888888 8999999887665543
No 70
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.03 E-value=0.00018 Score=89.27 Aligned_cols=262 Identities=13% Similarity=0.076 Sum_probs=207.4
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH--------HHHHHHhcCCCcccc
Q 000307 1049 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--------LWLMYINSRTPLNHR 1120 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~--------Lw~mYINsr~s~ddr 1120 (1690)
.-+..+|+.+|.+--+..++..=+...++..|..+....++...|+.+=+..|.--. ||-+
T Consensus 332 ~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL----------- 400 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL----------- 400 (638)
T ss_pred HHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH-----------
Confidence 366799999999988899999988889999999999999999999999998863221 5543
Q ss_pred hHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhcc
Q 000307 1121 LDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTI 1200 (1690)
Q Consensus 1121 l~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~ 1200 (1690)
.=+-++.+|++-.-..+|+. -+.--.+..||-.|++++.||..+.|=.| .+|+
T Consensus 401 --q~~v~Ls~Laq~Li~~~~~s-------PesWca~GNcfSLQkdh~~Aik~f~RAiQ-----ldp~------------- 453 (638)
T KOG1126|consen 401 --QDEVALSYLAQDLIDTDPNS-------PESWCALGNCFSLQKDHDTAIKCFKRAIQ-----LDPR------------- 453 (638)
T ss_pred --HhhHHHHHHHHHHHhhCCCC-------cHHHHHhcchhhhhhHHHHHHHHHHHhhc-----cCCc-------------
Confidence 22557888887666666887 66666789999999999999998887776 5663
Q ss_pred CCccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccch
Q 000307 1201 SDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSA 1280 (1690)
Q Consensus 1201 sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d 1280 (1690)
.+|.| +|+|.=+-..+....|-.. |...+.-+|+.=-|.+.+++-|+++ .
T Consensus 454 -------faYay-----TLlGhE~~~~ee~d~a~~~---fr~Al~~~~rhYnAwYGlG~vy~Kq--e------------- 503 (638)
T KOG1126|consen 454 -------FAYAY-----TLLGHESIATEEFDKAMKS---FRKALGVDPRHYNAWYGLGTVYLKQ--E------------- 503 (638)
T ss_pred -------cchhh-----hhcCChhhhhHHHHhHHHH---HHhhhcCCchhhHHHHhhhhheecc--c-------------
Confidence 22333 3455556666777777777 8888889999988888888777763 1
Q ss_pred hHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCcchh-HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHH
Q 000307 1281 HCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYV 1359 (1690)
Q Consensus 1281 ~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d~eL-~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLi 1359 (1690)
..+.|.--|.++++.+|.+..| ..++..+...+..+.|+..|++|+-++|+|.- .+++-+
T Consensus 504 ---------------k~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l----~~~~~~ 564 (638)
T KOG1126|consen 504 ---------------KLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL----CKYHRA 564 (638)
T ss_pred ---------------hhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch----hHHHHH
Confidence 2345556899999999999999 66777777777799999999999999999999 788889
Q ss_pred HHHHhcCChhHHHHHHHH------------HHHHHhhhcc-cccccchhhc
Q 000307 1360 EYALQNGRHDFAAELMDR------------WFHSVWKVQY-SQVEISDPLV 1397 (1690)
Q Consensus 1360 q~Al~~e~~d~ai~L~~~------------ff~gia~~Q~-~~deALD~lr 1397 (1690)
......+++++|...+++ |..|--|.+. ..+-|+-.|.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~ 615 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFS 615 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhH
Confidence 999999999999999988 5555555554 7777777665
No 71
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.02 E-value=0.0086 Score=72.97 Aligned_cols=466 Identities=16% Similarity=0.166 Sum_probs=296.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHHHHHHhcC---CCcccchHHHHHHHHHHHHh
Q 000307 1058 LLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSR---TPLNHRLDAYDAALSVLCRC 1134 (1690)
Q Consensus 1058 LLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw~mYINsr---~s~ddrl~aYdrAI~aLe~l 1134 (1690)
-|.-.|.-|..+-..|.-|++.--.++.-.-|...|++|+.-+-.|-.||+-|+..+ ..+...--.+|+|++.|
T Consensus 61 efEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l--- 137 (677)
T KOG1915|consen 61 EFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--- 137 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc---
Confidence 345567778888999999999988888888999999999999988888999999866 34555556778888877
Q ss_pred hhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccchhHHHHH-H
Q 000307 1135 ASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY-L 1213 (1690)
Q Consensus 1135 as~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iY-d 1213 (1690)
|-- .-+-+.-+.+--+-||+.-|-+.+.|-.. -+ -...||+|++- +
T Consensus 138 -----PRV-------dqlWyKY~ymEE~LgNi~gaRqiferW~~-----w~----------------P~eqaW~sfI~fE 184 (677)
T KOG1915|consen 138 -----PRV-------DQLWYKYIYMEEMLGNIAGARQIFERWME-----WE----------------PDEQAWLSFIKFE 184 (677)
T ss_pred -----chH-------HHHHHHHHHHHHHhcccHHHHHHHHHHHc-----CC----------------CcHHHHHHHHHHH
Confidence 332 44556677778888999988886655442 22 34578999996 8
Q ss_pred HhhccccHH--HHhhcc---chhhhhcCCCCCccc--chhhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHHHH
Q 000307 1214 VIYRKLPDA--VLQLLE---CEKELFAIDWPPVQL--EDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVN 1286 (1690)
Q Consensus 1214 l~YrvLPGd--~y~qne---~~KEAf~I~W~yvqv--lkdEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tKLN 1286 (1690)
++|.-.-+. +|..+= -+-..+-- |.+- .-..-.++..+++.|+++.. ++..+.- +=+.
T Consensus 185 lRykeieraR~IYerfV~~HP~v~~wik---yarFE~k~g~~~~aR~VyerAie~~~----~d~~~e~--------lfva 249 (677)
T KOG1915|consen 185 LRYKEIERARSIYERFVLVHPKVSNWIK---YARFEEKHGNVALARSVYERAIEFLG----DDEEAEI--------LFVA 249 (677)
T ss_pred HHhhHHHHHHHHHHHHheecccHHHHHH---HHHHHHhcCcHHHHHHHHHHHHHHhh----hHHHHHH--------HHHH
Confidence 888754331 222111 00001100 1111 11244566777777776664 2221111 1111
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCcchhHHHHHHHh--hccCCCcc----H-----HHHHHHHHhCCCCCchhHHHH
Q 000307 1287 HIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQ--KHDFGDLS----S-----VGFEEALIKWPKGVPGIQCIW 1355 (1690)
Q Consensus 1287 ~IRq~I~lEdse~al~LfdklLe~~P~d~eL~L~AayL~--~k~m~e~A----i-----~vfe~aL~~~PkNa~g~qcaW 1355 (1690)
+-.+-......+.|.-+|.=+|..-|.+-.-.|+..|+. ++-+...+ + ..|+..++.+|-|.- .|
T Consensus 250 FA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYD----sW 325 (677)
T KOG1915|consen 250 FAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYD----SW 325 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCch----HH
Confidence 111111122788899999999999999988888888753 33322233 2 579999999999999 99
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHHhhhcccccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHH
Q 000307 1356 NQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLH 1435 (1690)
Q Consensus 1356 ~QLiq~Al~~e~~d~ai~L~~~ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Ly 1435 (1690)
.-|+...=..|+-+.|.++-++ |+. -+++-+....- --| ++-+|+-+||
T Consensus 326 fdylrL~e~~g~~~~Ire~yEr--------------AIa-------nvpp~~ekr~W-~RY---------IYLWinYaly 374 (677)
T KOG1915|consen 326 FDYLRLEESVGDKDRIRETYER--------------AIA-------NVPPASEKRYW-RRY---------IYLWINYALY 374 (677)
T ss_pred HHHHHHHHhcCCHHHHHHHHHH--------------HHc-------cCCchhHHHHH-HHH---------HHHHHHHHHH
Confidence 9999988888888888877655 211 12221111100 012 2255555655
Q ss_pred H-hhhcChHHHHHHHHHHHhhccC--CcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHHHHHHhhhcccccccc-cchh
Q 000307 1436 R-LLQNDWNEARLAIDAALKAAAS--EHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDRARSLPYLKL-LPRQ 1511 (1690)
Q Consensus 1436 q-~Lqg~~~EAf~AYDkALk~np~--N~~i~cLNNYAYFLSle~~dL~KAEqMS~~~KtVsTYLDTAWILf~~~~-lARi 1511 (1690)
. +.-.+.+-+...|..||+.-|- =.|--.|-=||.|.- ...+|.+|-++=. +.| -.| .+. +=|.
T Consensus 375 eEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feI-Rq~~l~~ARkiLG--~AI----G~c-----PK~KlFk~ 442 (677)
T KOG1915|consen 375 EELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEI-RQLNLTGARKILG--NAI----GKC-----PKDKLFKG 442 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHH-HHcccHHHHHHHH--HHh----ccC-----CchhHHHH
Confidence 4 5567888899999999999993 457788999999975 3445666554222 111 000 111 3355
Q ss_pred hhccccchhhHHHHhhhcCCCCCChhhHHHHHhhccCCCCcccccccccchhHHHHHHHhhcCcchhhHHHHHHHhhccC
Q 000307 1512 FINNIERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNKDH 1591 (1690)
Q Consensus 1512 YI~~i~k~rv~~liDqaL~~~S~dsS~vNkALE~W~g~slLpqKI~~kKyI~dfVE~ime~~P~Ny~LALav~kll~k~~ 1591 (1690)
|| +++..|.-... -...-|+++|.-|.|-.-=+..+-|...-
T Consensus 443 YI------------------------elElqL~efDR-------------cRkLYEkfle~~Pe~c~~W~kyaElE~~L- 484 (677)
T KOG1915|consen 443 YI------------------------ELELQLREFDR-------------CRKLYEKFLEFSPENCYAWSKYAELETSL- 484 (677)
T ss_pred HH------------------------HHHHHHhhHHH-------------HHHHHHHHHhcChHhhHHHHHHHHHHHHh-
Confidence 66 23333332210 12356777888888877666555544321
Q ss_pred CCCCCCCCchhHHHHHhhhhhhhhhccCCCCchHHHHHHHHHhhhchhHHHHHHHHHHhhhccccchHHHHHHHHhhhcc
Q 000307 1592 NPNITDAVPESVLFWASSSLVSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPFSIKLWKCYYDLSKT 1671 (1690)
Q Consensus 1592 ~~~~~d~~s~~~~fwA~s~l~nai~~a~pvape~vWveAa~~l~~l~~~~~i~~rfy~~AlsvyPfS~~LW~~y~~~~k~ 1671 (1690)
+-.+- |..+.-=||.+-.--.||-+|.--+++.=.....+.- +-+|++-|.--+.+- .|-.+-+|+.+
T Consensus 485 ------gdtdR----aRaifelAi~qp~ldmpellwkaYIdFEi~~~E~eka-R~LYerlL~rt~h~k-vWisFA~fe~s 552 (677)
T KOG1915|consen 485 ------GDTDR----ARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKA-RALYERLLDRTQHVK-VWISFAKFEAS 552 (677)
T ss_pred ------hhHHH----HHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHH-HHHHHHHHHhcccch-HHHhHHHHhcc
Confidence 11111 2222223444434457999999999998888876665 999999988877765 99999999983
No 72
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.00 E-value=0.00097 Score=75.74 Aligned_cols=273 Identities=12% Similarity=-0.073 Sum_probs=158.1
Q ss_pred hhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCH
Q 000307 1028 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADP---TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY 1104 (1690)
Q Consensus 1028 ~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINP---tSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY 1104 (1690)
|.....|+-+|..++... +.+.|...+.+.+..+| +..+.++..+.++...+..+++.+.++++++.+|++.
T Consensus 3 p~~~~a~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~ 77 (355)
T cd05804 3 PDFALGHAAAALLLLLGG-----ERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL 77 (355)
T ss_pred CccHHHHHHHHHHHHhcC-----CcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence 444566777776666553 23344445555555555 6678899999999999999999999999999999988
Q ss_pred HHHH---HHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhccccc
Q 000307 1105 ALWL---MYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPAT 1181 (1690)
Q Consensus 1105 ~Lw~---mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al 1181 (1690)
..+. .|.... .+.++... +..++......+ ++. ...+..+..+|...|+++.|+..+.+...
T Consensus 78 ~a~~~~~~~~~~~-~~~~~~~~---~~~~l~~~~~~~-~~~-------~~~~~~~a~~~~~~G~~~~A~~~~~~al~--- 142 (355)
T cd05804 78 LALKLHLGAFGLG-DFSGMRDH---VARVLPLWAPEN-PDY-------WYLLGMLAFGLEEAGQYDRAEEAARRALE--- 142 (355)
T ss_pred HHHHHhHHHHHhc-ccccCchh---HHHHHhccCcCC-CCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---
Confidence 7554 344333 12344433 444443322333 555 67778888999999999999998887775
Q ss_pred CCCCcccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHH
Q 000307 1182 GSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNS 1261 (1690)
Q Consensus 1182 ~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dY 1261 (1690)
..+.. .....+++.+|...|..+|+... +.+.++..|......+
T Consensus 143 --~~p~~-------------------------~~~~~~la~i~~~~g~~~eA~~~---l~~~l~~~~~~~~~~~------ 186 (355)
T cd05804 143 --LNPDD-------------------------AWAVHAVAHVLEMQGRFKEGIAF---MESWRDTWDCSSMLRG------ 186 (355)
T ss_pred --hCCCC-------------------------cHHHHHHHHHHHHcCCHHHHHHH---HHhhhhccCCCcchhH------
Confidence 33321 12234568888888888888887 6666665553111000
Q ss_pred HHhhcCCcchhhhhcccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCcchh-H-----HHHHHHhhccCCCccHH
Q 000307 1262 VELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-V-----LMKARLQKHDFGDLSSV 1335 (1690)
Q Consensus 1262 Y~~~~ndEsla~~~n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d~eL-~-----L~AayL~~k~m~e~Ai~ 1335 (1690)
..-..+-++++...+.+.|+.++++++...|....+ . ....++...+ ......
T Consensus 187 --------------------~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~~~ 245 (355)
T cd05804 187 --------------------HNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAG-HVDVGD 245 (355)
T ss_pred --------------------HHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcC-CCChHH
Confidence 000111223333446677777777776665532222 1 2222233333 223334
Q ss_pred HHHHHHHhCCCCC--chhHHHHHHHHHHHHhcCChhHHHHHHHH
Q 000307 1336 GFEEALIKWPKGV--PGIQCIWNQYVEYALQNGRHDFAAELMDR 1377 (1690)
Q Consensus 1336 vfe~aL~~~PkNa--~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ 1377 (1690)
-|+.+....+... +.....+.-.+..++..++.+.|..++.+
T Consensus 246 ~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~ 289 (355)
T cd05804 246 RWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAA 289 (355)
T ss_pred HHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 4444433321110 22233333445556666667766666655
No 73
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.99 E-value=7.8e-05 Score=94.73 Aligned_cols=115 Identities=10% Similarity=-0.034 Sum_probs=108.8
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHH
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDA 1123 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~a 1123 (1690)
..|.|+.|..+|.+|++..|+.+.++..++.+-.+++.-++|.+-+++|++.+|+|.. ++-..+..+ .
T Consensus 98 ~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g--------~ 169 (694)
T PRK15179 98 AAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIG--------Q 169 (694)
T ss_pred HcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhc--------c
Confidence 4688999999999999999999999999999999999999999999999999999999 888889999 9
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1124 YDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1124 YdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
|++|+.+|+++.+.+ |+. -+.++.+.+++.-.|+.+.|...+.+-..
T Consensus 170 ~~~A~~~y~~~~~~~-p~~-------~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 170 SEQADACFERLSRQH-PEF-------ENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred hHHHHHHHHHHHhcC-CCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999977 888 89999999999999999999998877765
No 74
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.97 E-value=6e-05 Score=88.52 Aligned_cols=85 Identities=14% Similarity=0.095 Sum_probs=79.5
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHH
Q 000307 1049 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAY 1124 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aY 1124 (1690)
.|+|+.|+.+|.+||+.+|+++.+|+.++.+|..++...+|...|++|++++|++.. ++..|...+ .|
T Consensus 15 ~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg--------~~ 86 (356)
T PLN03088 15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE--------EY 86 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC--------CH
Confidence 478999999999999999999999999999999999999999999999999998766 888999999 99
Q ss_pred HHHHHHHHHhhhcCCCCc
Q 000307 1125 DAALSVLCRCASASDGDE 1142 (1690)
Q Consensus 1125 drAI~aLe~las~~~pDr 1142 (1690)
++|+..|++..... |+.
T Consensus 87 ~eA~~~~~~al~l~-P~~ 103 (356)
T PLN03088 87 QTAKAALEKGASLA-PGD 103 (356)
T ss_pred HHHHHHHHHHHHhC-CCC
Confidence 99999999988877 665
No 75
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.95 E-value=0.00012 Score=85.74 Aligned_cols=315 Identities=16% Similarity=0.098 Sum_probs=191.8
Q ss_pred hhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH--
Q 000307 1028 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-- 1105 (1690)
Q Consensus 1028 ~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~-- 1105 (1690)
|...++-..-|-.||. .|+-.+|+.=|+|-|+.-|+=..+-..-+.+..++++-+.|.+-|.+-++++|.|-.
T Consensus 69 p~~Y~aifrRaT~yLA-----mGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~ 143 (504)
T KOG0624|consen 69 PNNYQAIFRRATVYLA-----MGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVL 143 (504)
T ss_pred chhHHHHHHHHHHHhh-----hcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhH
Confidence 3344555555555554 466688999999999999999999999999999999999999999999999996644
Q ss_pred -----H------------HHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHH
Q 000307 1106 -----L------------WLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEK 1168 (1690)
Q Consensus 1106 -----L------------w~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydK 1168 (1690)
| ..-|+.++ .|..||++.-.+.+-. .|-..+..+++.||..-|...+
T Consensus 144 eaqskl~~~~e~~~l~~ql~s~~~~G--------D~~~ai~~i~~llEi~--------~Wda~l~~~Rakc~i~~~e~k~ 207 (504)
T KOG0624|consen 144 EAQSKLALIQEHWVLVQQLKSASGSG--------DCQNAIEMITHLLEIQ--------PWDASLRQARAKCYIAEGEPKK 207 (504)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhcCC--------chhhHHHHHHHHHhcC--------cchhHHHHHHHHHHHhcCcHHH
Confidence 1 12345566 7888888876665544 2335678889999999999999
Q ss_pred HHHHHHhhcccccCCCCcccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhc-cchhhhhcCCCCCcccchhh
Q 000307 1169 AIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLL-ECEKELFAIDWPPVQLEDDE 1247 (1690)
Q Consensus 1169 AI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qn-e~~KEAf~I~W~yvqvlkdE 1247 (1690)
||+-+...-. +..+|- ......-.++.|++|-... |..+-+ ++.+ -.-|..|.. |.++.|..
T Consensus 208 AI~Dlk~ask--Ls~DnT-e~~ykis~L~Y~vgd~~~s-L~~iRE----------CLKldpdHK~Cf~~---YKklkKv~ 270 (504)
T KOG0624|consen 208 AIHDLKQASK--LSQDNT-EGHYKISQLLYTVGDAENS-LKEIRE----------CLKLDPDHKLCFPF---YKKLKKVV 270 (504)
T ss_pred HHHHHHHHHh--ccccch-HHHHHHHHHHHhhhhHHHH-HHHHHH----------HHccCcchhhHHHH---HHHHHHHH
Confidence 9987643322 333442 2222333344455543322 000000 0000 011222332 33333222
Q ss_pred hh--hHHHHHHHHHHHHHhh-cCCcchhhhhcccchhHHHHHHH----HHHHHhcchHHHHHHHHHHHHhCCCcchh--H
Q 000307 1248 KQ--RAIKLIEMAVNSVELY-SNGESLEKETNLRSAHCFAVNHI----WCMAVLNGLECSMNLLEKYIKLYPSCLEL--V 1318 (1690)
Q Consensus 1248 Pd--nalAL~smA~dYY~~~-~ndEsla~~~n~k~d~~tKLN~I----Rq~I~lEdse~al~LfdklLe~~P~d~eL--~ 1318 (1690)
+. ++-+.++.. ++-.-- +|+.-+.. .-......+|.. +|+-.-+..-+|+.-|..+|+..|+|+++ -
T Consensus 271 K~les~e~~ie~~-~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~d 346 (504)
T KOG0624|consen 271 KSLESAEQAIEEK-HWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCD 346 (504)
T ss_pred HHHHHHHHHHhhh-hHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHH
Confidence 21 111222211 111000 11111111 111112222222 23333347788999999999999999999 4
Q ss_pred HHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHH-----HHHHHhhhcc-ccccc
Q 000307 1319 LMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR-----WFHSVWKVQY-SQVEI 1392 (1690)
Q Consensus 1319 L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~-----ff~gia~~Q~-~~deA 1392 (1690)
=.-||| ...|-++|+.-|+.|++.+|+|.. ++ ++.+.|.++-+. ||.=++--.. +-.|.
T Consensus 347 RAeA~l-~dE~YD~AI~dye~A~e~n~sn~~----~r----------eGle~Akrlkkqs~kRDYYKILGVkRnAsKqEI 411 (504)
T KOG0624|consen 347 RAEAYL-GDEMYDDAIHDYEKALELNESNTR----AR----------EGLERAKRLKKQSGKRDYYKILGVKRNASKQEI 411 (504)
T ss_pred HHHHHh-hhHHHHHHHHHHHHHHhcCcccHH----HH----------HHHHHHHHHHHHhccchHHHHhhhcccccHHHH
Confidence 445555 455689999999999999999998 55 477888888776 7766554444 66667
Q ss_pred chhhccc
Q 000307 1393 SDPLVAD 1399 (1690)
Q Consensus 1393 LD~lr~g 1399 (1690)
..++|+.
T Consensus 412 ~KAYRKl 418 (504)
T KOG0624|consen 412 TKAYRKL 418 (504)
T ss_pred HHHHHHH
Confidence 7777654
No 76
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.94 E-value=0.02 Score=71.77 Aligned_cols=579 Identities=14% Similarity=0.170 Sum_probs=309.3
Q ss_pred hhhchhhhHHHHHHHHHHhccccC---chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcC
Q 000307 1024 LKQVELSNEQCVEMALLILNQDAN---KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHN 1100 (1690)
Q Consensus 1024 Le~~~~d~qlWl~lAl~~Lnq~~n---~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVela 1100 (1690)
|.+=|-+.-+|-.+--.+..+-.+ ...-|..-=+.|.|||-.=-.=+-+|..|+++-+.++.-...+-.|-.|..-=
T Consensus 53 l~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraL 132 (835)
T KOG2047|consen 53 LKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRAL 132 (835)
T ss_pred HHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 344456667886665444444321 12334444455666666666778999999999999999998899999999888
Q ss_pred CCCHH--HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1101 EGSYA--LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1101 P~NY~--Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
|---. +|-+||..-++...- +.++.+|.+-..-. |.- +.|.+ ..++.+++.+.|-++|..+..
T Consensus 133 pvtqH~rIW~lyl~Fv~~~~lP----ets~rvyrRYLk~~-P~~------~eeyi----e~L~~~d~~~eaa~~la~vln 197 (835)
T KOG2047|consen 133 PVTQHDRIWDLYLKFVESHGLP----ETSIRVYRRYLKVA-PEA------REEYI----EYLAKSDRLDEAAQRLATVLN 197 (835)
T ss_pred chHhhccchHHHHHHHHhCCCh----HHHHHHHHHHHhcC-HHH------HHHHH----HHHHhccchHHHHHHHHHhcC
Confidence 76555 999999865444332 68888887766655 321 25544 455778999999998888875
Q ss_pred ----cccCCCCcccccHHHHHHHhccCCccchhHHHHHHHhhccc--------------cHHHHhhccc-------hhhh
Q 000307 1179 ----PATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKL--------------PDAVLQLLEC-------EKEL 1233 (1690)
Q Consensus 1179 ----~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvL--------------PGd~y~qne~-------~KEA 1233 (1690)
....|++.+++.+. +-.++...-+++..| .++-+.|.. +++.|...|. .+|+
T Consensus 198 ~d~f~sk~gkSn~qlw~e-lcdlis~~p~~~~sl--nvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeea 274 (835)
T KOG2047|consen 198 QDEFVSKKGKSNHQLWLE-LCDLISQNPDKVQSL--NVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEA 274 (835)
T ss_pred chhhhhhcccchhhHHHH-HHHHHHhCcchhccc--CHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 22334444333322 112233333332211 112222322 3344444443 3344
Q ss_pred hcCCCCCcccch-hhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHHHHHHHHHHHhc-chHHHHHHHHHHHHhC
Q 000307 1234 FAIDWPPVQLED-DEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLN-GLECSMNLLEKYIKLY 1311 (1690)
Q Consensus 1234 f~I~W~yvqvlk-dEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tKLN~IRq~I~lE-dse~al~LfdklLe~~ 1311 (1690)
+.- ...+.. +--=++|++|+-..-.-..-+.++.-. +.+.+.++-+-|-|+--+.+ +..- |=+-+|.++
T Consensus 275 i~~---v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~---n~ed~~dl~~~~a~~e~lm~rr~~~---lNsVlLRQn 345 (835)
T KOG2047|consen 275 IQT---VMTVRDFTQIFDAYAQFEESCVAAKMELADEESG---NEEDDVDLELHMARFESLMNRRPLL---LNSVLLRQN 345 (835)
T ss_pred HHh---heehhhHHHHHHHHHHHHHHHHHHHHhhhhhccc---ChhhhhhHHHHHHHHHHHHhccchH---HHHHHHhcC
Confidence 332 111100 011134455544211111100011100 12222222221111111111 1111 224566778
Q ss_pred CCcchhHHHHHHHhhccCCCccHHHHHHHH-HhCCCCCc-hhHHHHHHHHHHHHhcCChhHHHHHHHH-------H----
Q 000307 1312 PSCLELVLMKARLQKHDFGDLSSVGFEEAL-IKWPKGVP-GIQCIWNQYVEYALQNGRHDFAAELMDR-------W---- 1378 (1690)
Q Consensus 1312 P~d~eL~L~AayL~~k~m~e~Ai~vfe~aL-~~~PkNa~-g~qcaW~QLiq~Al~~e~~d~ai~L~~~-------f---- 1378 (1690)
|.+++=.+.-.-+...+ +.+-+.+|.+|+ ..+|+-++ ...-+|--++...+..++.+.|..|.+. +
T Consensus 346 ~~nV~eW~kRV~l~e~~-~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dL 424 (835)
T KOG2047|consen 346 PHNVEEWHKRVKLYEGN-AAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDL 424 (835)
T ss_pred CccHHHHHhhhhhhcCC-hHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHH
Confidence 88888877777777776 667778887775 57899988 4677899999999999999999999988 2
Q ss_pred ---HHHHhhhc---ccccccchhhcccC-CCCCCCCCCCCCcccccccccchhh-----hhHHHHHHHHHhhhcChHHHH
Q 000307 1379 ---FHSVWKVQ---YSQVEISDPLVADM-SHSSPESTSTSDPEFSVSNRNQMDV-----MFGYLNLSLHRLLQNDWNEAR 1446 (1690)
Q Consensus 1379 ---f~gia~~Q---~~~deALD~lr~g~-s~i~~es~s~~vSDfy~~~~~Q~d~-----~fa~LGD~Lyq~Lqg~~~EAf 1446 (1690)
+..+|..- +..+.|+.++++.. .|.+.. ...|=.+-+-|+=+ +.++.-|..-. -|-.+...
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~-----~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs--~gtfestk 497 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE-----LEYYDNSEPVQARLHRSLKIWSMYADLEES--LGTFESTK 497 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh-----hhhhcCCCcHHHHHHHhHHHHHHHHHHHHH--hccHHHHH
Confidence 22222222 27888999888773 232211 22222222334311 12222332222 35566677
Q ss_pred HHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHH------------HHHHhhhcccccccccchhhhc
Q 000307 1447 LAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLL------------NSYLDRARSLPYLKLLPRQFIN 1514 (1690)
Q Consensus 1447 ~AYDkALk~np~N~~i~cLNNYAYFLSle~~dL~KAEqMS~~~KtV------------sTYLDTAWILf~~~~lARiYI~ 1514 (1690)
++||+.|...--- =+...|||+||-.+.- ...+.++=. |.| .|||-. -.+ +|=
T Consensus 498 ~vYdriidLriaT--Pqii~NyAmfLEeh~y-feesFk~YE--rgI~LFk~p~v~diW~tYLtk--------fi~-ryg- 562 (835)
T KOG2047|consen 498 AVYDRIIDLRIAT--PQIIINYAMFLEEHKY-FEESFKAYE--RGISLFKWPNVYDIWNTYLTK--------FIK-RYG- 562 (835)
T ss_pred HHHHHHHHHhcCC--HHHHHHHHHHHHhhHH-HHHHHHHHH--cCCccCCCccHHHHHHHHHHH--------HHH-Hhc-
Confidence 9999999776644 4678899999865431 222222111 222 444432 111 221
Q ss_pred cccchhhHHHHhhhcCCCCCChhhHHHHHhhccCCCCcccccccccchhHHHHHHHhhcCcchhhHHHHHHHhhccCCCC
Q 000307 1515 NIERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNKDHNPN 1594 (1690)
Q Consensus 1515 ~i~k~rv~~liDqaL~~~S~dsS~vNkALE~W~g~slLpqKI~~kKyI~dfVE~ime~~P~Ny~LALav~kll~k~~~~~ 1594 (1690)
+-|=-|.|.|.+|||..-+ ...-|.+-.-| +-|..++++-|.--.+.|+....|+.--+|.+ .....+.
T Consensus 563 g~klEraRdLFEqaL~~Cp---p~~aKtiyLlY--A~lEEe~GLar~amsiyerat~~v~~a~~l~m--yni~I~k---- 631 (835)
T KOG2047|consen 563 GTKLERARDLFEQALDGCP---PEHAKTIYLLY--AKLEEEHGLARHAMSIYERATSAVKEAQRLDM--YNIYIKK---- 631 (835)
T ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHH--HHHHHHH----
Confidence 3344577888888887633 22222221111 01233333333334555555555554444433 2211111
Q ss_pred CCCCCchhHHHHHhhhhhhhhhccCCCCchHHHHHHHHHhhhchhHHHHHHHHH---------HhhhccccchH------
Q 000307 1595 ITDAVPESVLFWASSSLVSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFF---------KRALSVYPFSI------ 1659 (1690)
Q Consensus 1595 ~~d~~s~~~~fwA~s~l~nai~~a~pvape~vWveAa~~l~~l~~~~~i~~rfy---------~~AlsvyPfS~------ 1659 (1690)
+-.|+ .+| .+--|.=+|+..|.+-+. ++.|-||- .||=-.|-+|.
T Consensus 632 -----------------aae~y-Gv~-~TR~iYekaIe~Lp~~~~-r~mclrFAdlEtklGEidRARaIya~~sq~~dPr 691 (835)
T KOG2047|consen 632 -----------------AAEIY-GVP-RTREIYEKAIESLPDSKA-REMCLRFADLETKLGEIDRARAIYAHGSQICDPR 691 (835)
T ss_pred -----------------HHHHh-CCc-ccHHHHHHHHHhCChHHH-HHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCc
Confidence 11111 122 344566677777766655 33335553 34555555554
Q ss_pred ---HHHHHHHhhhcccCChHHHHHHHH
Q 000307 1660 ---KLWKCYYDLSKTKGDLNTIVKAAR 1683 (1690)
Q Consensus 1660 ---~LW~~y~~~~k~~g~~~~ive~ar 1683 (1690)
.+|...=.|+..+||-+++-|--|
T Consensus 692 ~~~~fW~twk~FEvrHGnedT~keMLR 718 (835)
T KOG2047|consen 692 VTTEFWDTWKEFEVRHGNEDTYKEMLR 718 (835)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 689999999999999866655443
No 77
>PLN02789 farnesyltranstransferase
Probab=97.93 E-value=0.00029 Score=82.30 Aligned_cols=115 Identities=17% Similarity=0.186 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHhcCCCCHHHHH----HHHhcCCCcccchHHH
Q 000307 1050 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN-SVGKDDMFSYSVKHNEGSYALWL----MYINSRTPLNHRLDAY 1124 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~-~~ea~emfekAVelaP~NY~Lw~----mYINsr~s~ddrl~aY 1124 (1690)
+.++.||.++..+|++||.+..+|.....++..++. -.++.+.+.+|++.+|.||++|. ++...+ ...+
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~------~~~~ 124 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLG------PDAA 124 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcC------chhh
Confidence 456788888888888888888888888888887764 36788888888888888888664 333333 1234
Q ss_pred HHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1125 DAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1125 drAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
++++.++..+.+.+ |.+ -.+..++.-++...|+|++||+..+++..
T Consensus 125 ~~el~~~~kal~~d-pkN-------y~AW~~R~w~l~~l~~~~eeL~~~~~~I~ 170 (320)
T PLN02789 125 NKELEFTRKILSLD-AKN-------YHAWSHRQWVLRTLGGWEDELEYCHQLLE 170 (320)
T ss_pred HHHHHHHHHHHHhC-ccc-------HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 67788777777776 777 77778888888888888888888887765
No 78
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.0013 Score=81.42 Aligned_cols=317 Identities=13% Similarity=0.163 Sum_probs=195.9
Q ss_pred CchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCC-CHH----HHHHHHhcCCCcccch
Q 000307 1047 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG-SYA----LWLMYINSRTPLNHRL 1121 (1690)
Q Consensus 1047 n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~-NY~----Lw~mYINsr~s~ddrl 1121 (1690)
...|+||+||++|+|-++.+-..-+.-.....+=. ..-..++ ..++|...|. +|. .+..||+.+
T Consensus 121 Yrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~--~a~l~~~--~~q~v~~v~e~syel~yN~Ac~~i~~g------- 189 (652)
T KOG2376|consen 121 YRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV--AAALQVQ--LLQSVPEVPEDSYELLYNTACILIENG------- 189 (652)
T ss_pred HHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH--HHhhhHH--HHHhccCCCcchHHHHHHHHHHHHhcc-------
Confidence 45699999999999999999998777766655511 1112222 6677777776 666 889999999
Q ss_pred HHHHHHHHHHHHh----hhc-CCCCc--chhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc----------------
Q 000307 1122 DAYDAALSVLCRC----ASA-SDGDE--MHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI---------------- 1178 (1690)
Q Consensus 1122 ~aYdrAI~aLe~l----as~-~~pDr--~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq---------------- 1178 (1690)
.|+.||+.|+.. -+. .+.|. ++-=..|-=+-+||+..|.+.|+.++|.+.+..+..
T Consensus 190 -ky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNL 268 (652)
T KOG2376|consen 190 -KYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNL 268 (652)
T ss_pred -cHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcch
Confidence 999999999554 011 11232 111223334557888999999999999997777765
Q ss_pred cccCCCC---cccccHHHHHHHhccCCccchhHHHHH-HHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHH
Q 000307 1179 PATGSND---RHSLFLSDILTCLTISDKLIFWVCCVY-LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKL 1254 (1690)
Q Consensus 1179 ~Al~G~s---E~~lSLsKi~~YLt~sDkc~AwLc~iY-dl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL 1254 (1690)
+|..+++ ++++..++=..+.+..|.+.+.|...+ ..+|+. .+.+-|-.|+......+ ...+-.+-|+-.+-.
T Consensus 269 va~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N-~~lL~l~tnk~~q~r~~---~a~lp~~~p~~~~~~ 344 (652)
T KOG2376|consen 269 VALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRN-NALLALFTNKMDQVREL---SASLPGMSPESLFPI 344 (652)
T ss_pred hhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhHHHHHHH---HHhCCccCchHHHHH
Confidence 1122221 112223444466667777777888887 333332 23344444443333333 222222223222222
Q ss_pred HHH------------HHHHHHhhcCCcchhhhhcccchhHHHHHHHHHHHHhcchHHHHHHHH--------HHHHhCCCc
Q 000307 1255 IEM------------AVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLE--------KYIKLYPSC 1314 (1690)
Q Consensus 1255 ~sm------------A~dYY~~~~ndEsla~~~n~k~d~~tKLN~IRq~I~lEdse~al~Lfd--------klLe~~P~d 1314 (1690)
+-. |..+...+... .+.-+...+|-+|...|..-+.+.|+..+. .+.+..-.=
T Consensus 345 ll~~~t~~~~~~~~ka~e~L~~~~~~-------~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P 417 (652)
T KOG2376|consen 345 LLQEATKVREKKHKKAIELLLQFADG-------HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP 417 (652)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhcc-------CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh
Confidence 221 11122111111 111123445554444444447777777777 555444333
Q ss_pred chh-HHHHHHHhhccCCCccHHHHHHHHHhCCCCCc---hhHHHHHHHHHHHHhcCChhHHHHHHHH---HHHHHhhhcc
Q 000307 1315 LEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVP---GIQCIWNQYVEYALQNGRHDFAAELMDR---WFHSVWKVQY 1387 (1690)
Q Consensus 1315 ~eL-~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~---g~qcaW~QLiq~Al~~e~~d~ai~L~~~---ff~gia~~Q~ 1387 (1690)
.-+ .+++.|...++ .+.|..++.+|+.-|-+... -+-|+|-++++.-++.|+..++..+.++ |+.....++.
T Consensus 418 ~~V~aiv~l~~~~~~-~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~ 496 (652)
T KOG2376|consen 418 GTVGAIVALYYKIKD-NDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLV 496 (652)
T ss_pred hHHHHHHHHHHhccC-CccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHH
Confidence 344 77788888888 88899999999999988877 6889999999999999999999999998 5555555554
No 79
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.92 E-value=0.0004 Score=89.06 Aligned_cols=310 Identities=17% Similarity=0.128 Sum_probs=178.0
Q ss_pred HHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HH
Q 000307 1032 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LW 1107 (1690)
Q Consensus 1032 qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw 1107 (1690)
..|+-.-.-||+ .++.-.|..-|++||.++|.+-.+|.-++..|...+..+-+.-.|-||..++|.+.. .+
T Consensus 563 ~nW~~rG~yyLe-----a~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A 637 (1238)
T KOG1127|consen 563 ENWVQRGPYYLE-----AHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEA 637 (1238)
T ss_pred hhhhhccccccC-----ccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHH
Confidence 566664444444 367789999999999999999999999999999999999999999999999998866 66
Q ss_pred HHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhh--hHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCC
Q 000307 1108 LMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASAC--ILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND 1185 (1690)
Q Consensus 1108 ~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~--ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~s 1185 (1690)
-|=-..+ .|..|+..|+...... .+ .++++ +-+.++.++-.+..+|=+.||.+-+..=.+--+....
T Consensus 638 ~~ecd~G--------kYkeald~l~~ii~~~-s~--e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 638 VMECDNG--------KYKEALDALGLIIYAF-SL--ERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred HHHHHhh--------hHHHHHHHHHHHHHHH-HH--HHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 6666677 8999999997765544 22 35554 3677888888887777776666533211110001111
Q ss_pred cccccHHHHHHHhccCCccch--hHH----HHH-HHhhcc-ccHHHHhhccchhhhhcCCCC-CcccchhhhhhHHHHHH
Q 000307 1186 RHSLFLSDILTCLTISDKLIF--WVC----CVY-LVIYRK-LPDAVLQLLECEKELFAIDWP-PVQLEDDEKQRAIKLIE 1256 (1690)
Q Consensus 1186 E~~lSLsKi~~YLt~sDkc~A--wLc----~iY-dl~Yrv-LPGd~y~qne~~KEAf~I~W~-yvqvlkdEPdnalAL~s 1256 (1690)
+ .+ -+......-.||.|-. |+. ..| +.++-. +.+-.+ ..+.|.+-+.-. +...++-=- .++--..
T Consensus 707 h-~~-~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~---l~~~d~l~Lg~~c~~~hlsl~~-~~~~WyN 780 (1238)
T KOG1127|consen 707 H-SL-QSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGA---LKKNDLLFLGYECGIAHLSLAI-HMYPWYN 780 (1238)
T ss_pred H-hh-hhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhccc---CcchhHHHHHHHHhhHHHHHhh-ccchHHH
Confidence 1 11 2234445555666554 333 222 111111 111111 122221110000 111111000 0333344
Q ss_pred HHHHHHHhhcC-CcchhhhhcccchhHHHHHHHHHHHHhc-----------------chHHHHHHHHHHHHhCCCcchh-
Q 000307 1257 MAVNSVELYSN-GESLEKETNLRSAHCFAVNHIWCMAVLN-----------------GLECSMNLLEKYIKLYPSCLEL- 1317 (1690)
Q Consensus 1257 mA~dYY~~~~n-dEsla~~~n~k~d~~tKLN~IRq~I~lE-----------------dse~al~LfdklLe~~P~d~eL- 1317 (1690)
++.+||+.|.- +|.. -+.|++++-+...|.++ ..-++..-|-+.+.+.|.|.-.
T Consensus 781 LGinylr~f~~l~et~-------~~~~~Ai~c~KkaV~L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~~~~~W 853 (1238)
T KOG1127|consen 781 LGINYLRYFLLLGETM-------KDACTAIRCCKKAVSLCANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPTCHCQW 853 (1238)
T ss_pred HhHHHHHHHHHcCCcc-------hhHHHHHHHHHHHHHHhhccHHHHHHHHHhhccchhhhhhhhhhhhhhccccchhhe
Confidence 44555553211 1111 11244443333333322 3445556677777777877766
Q ss_pred -HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHH
Q 000307 1318 -VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELM 1375 (1690)
Q Consensus 1318 -~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~ 1375 (1690)
-|-..+|+.++ .+-|-++|..+.+++|.|.. .|.--+-...+.|++=+...+.
T Consensus 854 ~NlgvL~l~n~d-~E~A~~af~~~qSLdP~nl~----~WlG~Ali~eavG~ii~~~~lf 907 (1238)
T KOG1127|consen 854 LNLGVLVLENQD-FEHAEPAFSSVQSLDPLNLV----QWLGEALIPEAVGRIIERLILF 907 (1238)
T ss_pred eccceeEEeccc-HHHhhHHHHhhhhcCchhhH----HHHHHHHhHHHHHHHHHHHHHH
Confidence 45555666666 77777888888888888888 6754444455555444444443
No 80
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.00068 Score=83.34 Aligned_cols=348 Identities=11% Similarity=0.046 Sum_probs=197.4
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHHHHHHhcC--CC------cccchH-----HHHHHHHHHHHhh-
Q 000307 1070 EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSR--TP------LNHRLD-----AYDAALSVLCRCA- 1135 (1690)
Q Consensus 1070 AeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw~mYINsr--~s------~ddrl~-----aYdrAI~aLe~la- 1135 (1690)
+.+.|+-..+|-.+.+.++|.+.|..|...++.+|.-...++... +. |..+.. ...+-+..|=++.
T Consensus 141 ssic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~ 220 (611)
T KOG1173|consen 141 SSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKL 220 (611)
T ss_pred hceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhh
Confidence 346778888899999999999999999999999999222222211 00 001000 1222222221211
Q ss_pred ----hcCC----CC-cchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHH-HHhccCCccc
Q 000307 1136 ----SASD----GD-EMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDIL-TCLTISDKLI 1205 (1690)
Q Consensus 1136 ----s~~~----pD-r~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~-~YLt~sDkc~ 1205 (1690)
.... +| .-+.-+--+|++...++-+-..+++.+-....+.++. .++-+. ....-+|. .|+.-++..+
T Consensus 221 ~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle--~dpfh~-~~~~~~ia~l~el~~~n~L 297 (611)
T KOG1173|consen 221 CKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLE--KDPFHL-PCLPLHIACLYELGKSNKL 297 (611)
T ss_pred hhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHh--hCCCCc-chHHHHHHHHHHhcccchH
Confidence 0000 10 1111235689999999999999999998888888886 666665 33444444 3333344444
Q ss_pred h----hHHHHH----HHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhh--
Q 000307 1206 F----WVCCVY----LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKET-- 1275 (1690)
Q Consensus 1206 A----wLc~iY----dl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~-- 1275 (1690)
+ .|+..| ..=| -.|-.|+..++..||=.. +.+....||.-+.|-+..| ..|.. ..+-.+.+
T Consensus 298 f~lsh~LV~~yP~~a~sW~--aVg~YYl~i~k~seARry---~SKat~lD~~fgpaWl~fg-hsfa~---e~EhdQAmaa 368 (611)
T KOG1173|consen 298 FLLSHKLVDLYPSKALSWF--AVGCYYLMIGKYSEARRY---FSKATTLDPTFGPAWLAFG-HSFAG---EGEHDQAMAA 368 (611)
T ss_pred HHHHHHHHHhCCCCCcchh--hHHHHHHHhcCcHHHHHH---HHHHhhcCccccHHHHHHh-HHhhh---cchHHHHHHH
Confidence 4 444444 1111 135667777888888777 7777777888877777776 44432 22211111
Q ss_pred cccchhHHHHHHHH-HHHHhc-----chHHHHHHHHHHHHhCCCcchh--HHHHHHHhhccCCCccHHHHHHHHHhCCCC
Q 000307 1276 NLRSAHCFAVNHIW-CMAVLN-----GLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKG 1347 (1690)
Q Consensus 1276 n~k~d~~tKLN~IR-q~I~lE-----dse~al~LfdklLe~~P~d~eL--~L~AayL~~k~m~e~Ai~vfe~aL~~~PkN 1347 (1690)
.-+...-++=.|+= .|+..| ..+-|-..|..++..+|.|+=+ .|-......+. -.+|..-|+.+|..-+..
T Consensus 369 Y~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~-y~~A~~~f~~~l~~ik~~ 447 (611)
T KOG1173|consen 369 YFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEE-YPEALKYFQKALEVIKSV 447 (611)
T ss_pred HHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhh-hHHHHHHHHHHHHHhhhc
Confidence 11111111111111 111122 5666667777777777777666 44444444444 335555666666332222
Q ss_pred CchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcccccccchhhcccCCCCCCCCCCCCCcccccccccchhhhh
Q 000307 1348 VPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMF 1427 (1690)
Q Consensus 1348 a~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~f 1427 (1690)
-+-.. .|.-+. .+.-.+.+- +....+|++.++++....+. ..+.|
T Consensus 448 ~~e~~-~w~p~~------~NLGH~~Rk-----------l~~~~eAI~~~q~aL~l~~k------~~~~~----------- 492 (611)
T KOG1173|consen 448 LNEKI-FWEPTL------NNLGHAYRK-----------LNKYEEAIDYYQKALLLSPK------DASTH----------- 492 (611)
T ss_pred ccccc-chhHHH------HhHHHHHHH-----------HhhHHHHHHHHHHHHHcCCC------chhHH-----------
Confidence 22110 231111 111122222 23778888888887554432 25667
Q ss_pred HHHHHHHHHhhhcChHHHHHHHHHHHhhccCCcHH-HHHHH
Q 000307 1428 GYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFK-HCVRE 1467 (1690)
Q Consensus 1428 a~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i-~cLNN 1467 (1690)
+-+|.||+- .|+.+.|.+.|-|||-.+|+|.++ .||..
T Consensus 493 asig~iy~l--lgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 493 ASIGYIYHL--LGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHH--hcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 889999999 999999999999999999999444 45553
No 81
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.86 E-value=4e-05 Score=88.43 Aligned_cols=100 Identities=16% Similarity=0.210 Sum_probs=87.0
Q ss_pred HHHHHHHHHhcccc--CchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH-----
Q 000307 1033 QCVEMALLILNQDA--NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----- 1105 (1690)
Q Consensus 1033 lWl~lAl~~Lnq~~--n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----- 1105 (1690)
-..++|-.+=++-- =+.++|.+|++.|..||+++|++|+.|+.-+..|++++.-+.|..-|++|+++|| +|+
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-~yskay~R 154 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-HYSKAYGR 154 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-HHHHHHHH
Confidence 35667766666633 3578999999999999999999999999999999999999999999999999995 777
Q ss_pred HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCc
Q 000307 1106 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDE 1142 (1690)
Q Consensus 1106 Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr 1142 (1690)
|+..|+.++ .|++|+++|-....-. |++
T Consensus 155 LG~A~~~~g--------k~~~A~~aykKaLeld-P~N 182 (304)
T KOG0553|consen 155 LGLAYLALG--------KYEEAIEAYKKALELD-PDN 182 (304)
T ss_pred HHHHHHccC--------cHHHHHHHHHhhhccC-CCc
Confidence 899999999 9999999996655555 887
No 82
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.84 E-value=0.0095 Score=71.41 Aligned_cols=309 Identities=15% Similarity=0.070 Sum_probs=225.8
Q ss_pred hhhHHHHH-----HHHHHhcccc--CchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCC
Q 000307 1029 LSNEQCVE-----MALLILNQDA--NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNE 1101 (1690)
Q Consensus 1029 ~d~qlWl~-----lAl~~Lnq~~--n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP 1101 (1690)
.....|-. -|-+.++.-- -.-|+|.+|-.++.++=|.-+.-..+|..=+..=-+++....++.++.+|.+..+
T Consensus 70 ~~~~~w~~~rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~ 149 (400)
T COG3071 70 AHTRGWFSRRKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAG 149 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCC
Confidence 34455554 2444444433 3469999999999999999998888888888888899999999999999999975
Q ss_pred CCHH-----HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhh
Q 000307 1102 GSYA-----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRL 1176 (1690)
Q Consensus 1102 ~NY~-----Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rL 1176 (1690)
+.-- .+..-++.+ .|+.|..-+.++.+-. |-. .+++..+.++|..+|+|+..+..+..|
T Consensus 150 ~~~l~v~ltrarlll~~~--------d~~aA~~~v~~ll~~~-pr~-------~~vlrLa~r~y~~~g~~~~ll~~l~~L 213 (400)
T COG3071 150 DDTLAVELTRARLLLNRR--------DYPAARENVDQLLEMT-PRH-------PEVLRLALRAYIRLGAWQALLAILPKL 213 (400)
T ss_pred CchHHHHHHHHHHHHhCC--------CchhHHHHHHHHHHhC-cCC-------hHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4443 678889999 9999999998888877 666 899999999999999999999988888
Q ss_pred cccccCCCCcccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHH
Q 000307 1177 LIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIE 1256 (1690)
Q Consensus 1177 Eq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~s 1256 (1690)
+...+-+++| +..+..+ .|+.+ +++......+-.
T Consensus 214 ~ka~~l~~~e-------~~~le~~--------------a~~gl----L~q~~~~~~~~g--------------------- 247 (400)
T COG3071 214 RKAGLLSDEE-------AARLEQQ--------------AWEGL----LQQARDDNGSEG--------------------- 247 (400)
T ss_pred HHccCCChHH-------HHHHHHH--------------HHHHH----HHHHhccccchH---------------------
Confidence 8533333333 3333221 11111 122111111100
Q ss_pred HHHHHHHhhcCCcchhhhhcccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCcchhHHHHHHHhhccCCCccHHH
Q 000307 1257 MAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVG 1336 (1690)
Q Consensus 1257 mA~dYY~~~~ndEsla~~~n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d~eL~L~AayL~~k~m~e~Ai~v 1336 (1690)
+ .+..+. +.. ..|.+..+++.++-++|.+.+-+.|..+....++..-+.- |..+..++.-.+ +.+=+..
T Consensus 248 L-~~~W~~------~pr--~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~l~~~d-~~~l~k~ 316 (400)
T COG3071 248 L-KTWWKN------QPR--KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIPRLRPGD-PEPLIKA 316 (400)
T ss_pred H-HHHHHh------ccH--HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHhhcCCCC-chHHHHH
Confidence 1 122221 011 2556677777777788887788889989999998876655 766667788887 7788899
Q ss_pred HHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcccccccchhhcccCCCCCCCCCCCCCcccc
Q 000307 1337 FEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFS 1416 (1690)
Q Consensus 1337 fe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy 1416 (1690)
.++.+...|+++ |+|.-|-+.++..+-|.+|...++. |++ . -+ ..+| |
T Consensus 317 ~e~~l~~h~~~p----~L~~tLG~L~~k~~~w~kA~~~lea--------------Al~---~----~~------s~~~-~ 364 (400)
T COG3071 317 AEKWLKQHPEDP----LLLSTLGRLALKNKLWGKASEALEA--------------ALK---L----RP------SASD-Y 364 (400)
T ss_pred HHHHHHhCCCCh----hHHHHHHHHHHHhhHHHHHHHHHHH--------------HHh---c----CC------Chhh-H
Confidence 999999999998 6999999999999999999887743 222 1 11 1245 6
Q ss_pred cccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhh
Q 000307 1417 VSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKA 1455 (1690)
Q Consensus 1417 ~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~ 1455 (1690)
.++++.+-+ .|...+|.+.+..+|-.
T Consensus 365 -----------~~la~~~~~--~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 365 -----------AELADALDQ--LGEPEEAEQVRREALLL 390 (400)
T ss_pred -----------HHHHHHHHH--cCChHHHHHHHHHHHHH
Confidence 899999999 99999999999999943
No 83
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.0016 Score=80.63 Aligned_cols=401 Identities=16% Similarity=0.105 Sum_probs=212.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH--HHHHHHhcCCCcccchHHHHHHHH
Q 000307 1052 MKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--LWLMYINSRTPLNHRLDAYDAALS 1129 (1690)
Q Consensus 1052 yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~--Lw~mYINsr~s~ddrl~aYdrAI~ 1129 (1690)
.|.|+..+. -.|+.+.-+.-.+++++|+++...++.+.|++-++++-+.|. +-...+ +-..|+.
T Consensus 95 ~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~-----------a~~a~l~ 160 (652)
T KOG2376|consen 95 LDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL-----------AVAAALQ 160 (652)
T ss_pred HHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH-----------HHHHhhh
Confidence 344444444 345555666666666666666666666666666666666555 111111 1112222
Q ss_pred H-HHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccchhH
Q 000307 1130 V-LCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWV 1208 (1690)
Q Consensus 1130 a-Le~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwL 1208 (1690)
+ +++.......|- -|.++-.+=.|.-.|+|.+||+ |+.+| |-.-+.-|..+|.+
T Consensus 161 ~~~~q~v~~v~e~s-------yel~yN~Ac~~i~~gky~qA~e----lL~kA----------~~~~~e~l~~~d~~---- 215 (652)
T KOG2376|consen 161 VQLLQSVPEVPEDS-------YELLYNTACILIENGKYNQAIE----LLEKA----------LRICREKLEDEDTN---- 215 (652)
T ss_pred HHHHHhccCCCcch-------HHHHHHHHHHHHhcccHHHHHH----HHHHH----------HHHHHHhhcccccc----
Confidence 2 222222221222 4677888888888999999998 44311 11223335556665
Q ss_pred HHHH---HHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhH--HHHHHHHHHHHHhhcCCcchhhhh--------
Q 000307 1209 CCVY---LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRA--IKLIEMAVNSVELYSNGESLEKET-------- 1275 (1690)
Q Consensus 1209 c~iY---dl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdna--lAL~smA~dYY~~~~ndEsla~~~-------- 1275 (1690)
-+.| +-.-|+=+.=+++..|..+|+..| |+.+++.+|-.. .|++.- +... +.++.....+.
T Consensus 216 eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i---y~~~i~~~~~D~~~~Av~~N--NLva-~~~d~~~~d~~~l~~k~~~ 289 (652)
T KOG2376|consen 216 EEEIEEELNPIRVQLAYVLQLQGQTAEASSI---YVDIIKRNPADEPSLAVAVN--NLVA-LSKDQNYFDGDLLKSKKSQ 289 (652)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcchHHHHHH---HHHHHHhcCCCchHHHHHhc--chhh-hccccccCchHHHHHHHHH
Confidence 2222 222344455578888999999998 888876655433 122111 1122 12222211111
Q ss_pred --------cccchhHHHHHHHHHHHHh----cchHHHHHHHHHHHHhCCCcc-hhHHHHHHHhhccCCCccHHHHHHHHH
Q 000307 1276 --------NLRSAHCFAVNHIWCMAVL----NGLECSMNLLEKYIKLYPSCL-ELVLMKARLQKHDFGDLSSVGFEEALI 1342 (1690)
Q Consensus 1276 --------n~k~d~~tKLN~IRq~I~l----Edse~al~LfdklLe~~P~d~-eL~L~AayL~~k~m~e~Ai~vfe~aL~ 1342 (1690)
-.++...-|-+++|...++ .--.++..++-++-...|.-. ++.|.++++...+....+..+++....
T Consensus 290 ~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~ 369 (652)
T KOG2376|consen 290 VFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD 369 (652)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc
Confidence 0011111112222222221 144556666655555554432 336666665554457788899999999
Q ss_pred hCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHHH----HHHHhhhcc--cccccchhhcccCCCCCCCCCCCC---Cc
Q 000307 1343 KWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRW----FHSVWKVQY--SQVEISDPLVADMSHSSPESTSTS---DP 1413 (1690)
Q Consensus 1343 ~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~f----f~gia~~Q~--~~deALD~lr~g~s~i~~es~s~~---vS 1413 (1690)
..|.+.-- +=.-.+++.+.+|++..|++|..-| -.++-..+. ....++..+.....-.. +.++. .-
T Consensus 370 ~~p~~s~~---v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~--~a~~vl~~Ai 444 (652)
T KOG2376|consen 370 GHPEKSKV---VLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDND--SASAVLDSAI 444 (652)
T ss_pred cCCchhHH---HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCc--cHHHHHHHHH
Confidence 99999332 3455677889999999999999953 333333333 44555555553322110 10000 00
Q ss_pred ccccccccchhhhhHHHHH-HHHHhhhcChHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHH
Q 000307 1414 EFSVSNRNQMDVMFGYLNL-SLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLL 1492 (1690)
Q Consensus 1414 Dfy~~~~~Q~d~~fa~LGD-~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLSle~~dL~KAEqMS~~~KtV 1492 (1690)
+.|.-....--+.-.+|++ .-+++.+|+.+||-.-||.-++++|+- .++|---..= ....|-++|+.|+..+.-.
T Consensus 445 ~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d--~~~l~~lV~a--~~~~d~eka~~l~k~L~p~ 520 (652)
T KOG2376|consen 445 KWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPND--TDLLVQLVTA--YARLDPEKAESLSKKLPPL 520 (652)
T ss_pred HHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCch--HHHHHHHHHH--HHhcCHHHHHHHhhcCCCc
Confidence 1110000000111234444 556777899999999999999999976 4444332221 1234678999999844222
Q ss_pred HHHH----h----hhccccccc
Q 000307 1493 NSYL----D----RARSLPYLK 1506 (1690)
Q Consensus 1493 sTYL----D----TAWILf~~~ 1506 (1690)
.+.. | +.|+.+-++
T Consensus 521 ~~l~~vdVd~LE~s~ga~~~~~ 542 (652)
T KOG2376|consen 521 KGLKAVDVDALEKSDGAKYSEA 542 (652)
T ss_pred ccchhcCchHhhhccCcchhhh
Confidence 2222 2 258888776
No 84
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.84 E-value=0.00089 Score=82.93 Aligned_cols=362 Identities=17% Similarity=0.133 Sum_probs=208.0
Q ss_pred HHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccc
Q 000307 1150 LDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLEC 1229 (1690)
Q Consensus 1150 LDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~ 1229 (1690)
.|++|+.++++..+|++++||..|...+. -.-. .+.+..+-+.+|+..|+
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~----~I~D--------------------------k~~~~E~rA~ll~kLg~ 53 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEK----QILD--------------------------KLAVLEKRAELLLKLGR 53 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhh----hCCC--------------------------HHHHHHHHHHHHHHcCC
Confidence 68999999999999999999997644442 0000 23445567899999999
Q ss_pred hhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHHHHHHHHHHHhcchHHHHHHHHHHHH
Q 000307 1230 EKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIK 1309 (1690)
Q Consensus 1230 ~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe 1309 (1690)
.+||..+ |..+++.+|+|....-.+. ...-. +.. +.-++.+....+++.+-+
T Consensus 54 ~~eA~~~---y~~Li~rNPdn~~Yy~~L~-~~~g~---~~~---------------------~~~~~~~~~~~~y~~l~~ 105 (517)
T PF12569_consen 54 KEEAEKI---YRELIDRNPDNYDYYRGLE-EALGL---QLQ---------------------LSDEDVEKLLELYDELAE 105 (517)
T ss_pred HHHHHHH---HHHHHHHCCCcHHHHHHHH-HHHhh---hcc---------------------cccccHHHHHHHHHHHHH
Confidence 9999999 9999999999986666552 22211 000 001123333344444444
Q ss_pred hCCCcchh--------------HHHHHHHh--hccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhH---
Q 000307 1310 LYPSCLEL--------------VLMKARLQ--KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDF--- 1370 (1690)
Q Consensus 1310 ~~P~d~eL--------------~L~AayL~--~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~--- 1370 (1690)
.||.+.-+ .++..||. .++ +.+++.+=...|-.+|....-+..+-..|+..+-..+.+..
T Consensus 106 ~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K-gvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~ 184 (517)
T PF12569_consen 106 KYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK-GVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDD 184 (517)
T ss_pred hCccccchhHhhcccCCHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccc
Confidence 44433222 12222221 111 12222222222323454444233333222222211111110
Q ss_pred ------HHHHHHHHHHHHhhhcc-cccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChH
Q 000307 1371 ------AAELMDRWFHSVWKVQY-SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWN 1443 (1690)
Q Consensus 1371 ------ai~L~~~ff~gia~~Q~-~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~ 1443 (1690)
..-+..-||++--+... ..++|++.+.++..|.+. +-|+| -..+.+|-+ .|+.+
T Consensus 185 ~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt------~~ely-----------~~KarilKh--~G~~~ 245 (517)
T PF12569_consen 185 EEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT------LVELY-----------MTKARILKH--AGDLK 245 (517)
T ss_pred cccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------cHHHH-----------HHHHHHHHH--CCCHH
Confidence 01122224555444333 666777777766666533 45777 678888888 88888
Q ss_pred HHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHHHHHHhhhcccccccccchhhhccccchhhHH
Q 000307 1444 EARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDRARSLPYLKLLPRQFINNIERPRLQQ 1523 (1690)
Q Consensus 1444 EAf~AYDkALk~np~N~~i~cLNNYAYFLSle~~dL~KAEqMS~~~KtVsTYLDTAWILf~~~~lARiYI~~i~k~rv~~ 1523 (1690)
+|..++|.|-+..... -..-+..|.|+.-.+ ..++|+.|-. +|.+...
T Consensus 246 ~Aa~~~~~Ar~LD~~D--RyiNsK~aKy~LRa~-~~e~A~~~~~--------------~Ftr~~~--------------- 293 (517)
T PF12569_consen 246 EAAEAMDEARELDLAD--RYINSKCAKYLLRAG-RIEEAEKTAS--------------LFTREDV--------------- 293 (517)
T ss_pred HHHHHHHHHHhCChhh--HHHHHHHHHHHHHCC-CHHHHHHHHH--------------hhcCCCC---------------
Confidence 8888888888888866 334445666655544 3555555444 4444221
Q ss_pred HHhhhcCCCCCChhhHHHHHhhccCCCCcccccccccchhHHHHHHHhhcCcchhhHHHHHHHhhccCCCCCCCCCchhH
Q 000307 1524 LIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNKDHNPNITDAVPESV 1603 (1690)
Q Consensus 1524 liDqaL~~~S~dsS~vNkALE~W~g~slLpqKI~~kKyI~dfVE~ime~~P~Ny~LALav~kll~k~~~~~~~d~~s~~~ 1603 (1690)
+..++.+..=-+|+ +..+.++..- =.+|++||--+..+.+||. +---.+.
T Consensus 294 ----------~~~~~L~~mQc~Wf--------------~~e~a~a~~r--~~~~~~ALk~~~~v~k~f~----~~~~DQf 343 (517)
T PF12569_consen 294 ----------DPLSNLNDMQCMWF--------------ETECAEAYLR--QGDYGLALKRFHAVLKHFD----DFEEDQF 343 (517)
T ss_pred ----------CcccCHHHHHHHHH--------------HHHHHHHHHH--HhhHHHHHHHHHHHHHHHH----HHhcccc
Confidence 11122333334675 3444454443 2689999999999999988 4444455
Q ss_pred HHHHhhhhhhhhhccCCCCchHHHHHHHHHhhhchhHHHHHHHHHHhhhccccchHHHHHHHHhhhcc
Q 000307 1604 LFWASSSLVSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPFSIKLWKCYYDLSKT 1671 (1690)
Q Consensus 1604 ~fwA~s~l~nai~~a~pvape~vWveAa~~l~~l~~~~~i~~rfy~~AlsvyPfS~~LW~~y~~~~k~ 1671 (1690)
-|-.-.+==..+ ..||+--.|.+.|.+ +.||-+|. ..+++.|+.+--.
T Consensus 344 DFH~Yc~RK~t~---------r~Y~~~L~~ed~l~~-----~~~y~raa------~~ai~iYl~l~d~ 391 (517)
T PF12569_consen 344 DFHSYCLRKMTL---------RAYVDMLRWEDKLRS-----HPFYRRAA------KGAIRIYLELHDK 391 (517)
T ss_pred cHHHHHHhhccH---------HHHHHHHHHHHHhhc-----CHHHHHHH------HHHHHHHHHHhcC
Confidence 555443333333 467999999999998 89999986 5677888877543
No 85
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.82 E-value=3.7e-05 Score=68.00 Aligned_cols=63 Identities=16% Similarity=0.272 Sum_probs=55.9
Q ss_pred HHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCC
Q 000307 1036 EMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1103 (1690)
Q Consensus 1036 ~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~N 1103 (1690)
.+|..++.+ |+|++|...|.++++.+|.++.+|+.++.+|+.++...++..+|++|++.+|+|
T Consensus 2 ~~a~~~~~~-----g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQ-----GDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHC-----THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHc-----CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 345555555 899999999999999999999999999999999999999999999999999986
No 86
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.0002 Score=86.35 Aligned_cols=142 Identities=16% Similarity=0.130 Sum_probs=110.4
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHHH
Q 000307 1050 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1125 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYd 1125 (1690)
+..++|...|+|||..||....||..+++=|+.+++...|.+.+++||+.+|.+|. |+++|--.. +=.
T Consensus 344 ~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~--------Mh~ 415 (559)
T KOG1155|consen 344 SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMK--------MHF 415 (559)
T ss_pred HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhc--------chH
Confidence 44589999999999999999999999999999999999999999999999999998 889998877 333
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccc
Q 000307 1126 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLI 1205 (1690)
Q Consensus 1126 rAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~ 1205 (1690)
=|+-.|-+....- |-- .=++..|.+||-..++.+.||.-+.|-- .-|+.|+.....--..|..++|-..
T Consensus 416 YaLyYfqkA~~~k-PnD-------sRlw~aLG~CY~kl~~~~eAiKCykrai---~~~dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 416 YALYYFQKALELK-PND-------SRLWVALGECYEKLNRLEEAIKCYKRAI---LLGDTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred HHHHHHHHHHhcC-CCc-------hHHHHHHHHHHHHhccHHHHHHHHHHHH---hccccchHHHHHHHHHHHHHHhHHH
Confidence 3444443332322 322 3478899999999999999999877765 3344454555555567888888877
Q ss_pred hhHHH
Q 000307 1206 FWVCC 1210 (1690)
Q Consensus 1206 AwLc~ 1210 (1690)
|..++
T Consensus 485 Aa~~y 489 (559)
T KOG1155|consen 485 AAQYY 489 (559)
T ss_pred HHHHH
Confidence 74443
No 87
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.76 E-value=0.00049 Score=90.37 Aligned_cols=247 Identities=16% Similarity=0.217 Sum_probs=171.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH-------HHHHHHhcCCCcccchHHHHHHHH
Q 000307 1057 SLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-------LWLMYINSRTPLNHRLDAYDAALS 1129 (1690)
Q Consensus 1057 dLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~-------Lw~mYINsr~s~ddrl~aYdrAI~ 1129 (1690)
+=|.|-+-.+|+++.+|..|..++.+...-++|+..+++|..-= ||. +|--|+|.+..+..- +.-..
T Consensus 1445 eDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tI--N~REeeEKLNiWiA~lNlEn~yG~e----esl~k 1518 (1710)
T KOG1070|consen 1445 EDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTI--NFREEEEKLNIWIAYLNLENAYGTE----ESLKK 1518 (1710)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhC--CcchhHHHHHHHHHHHhHHHhhCcH----HHHHH
Confidence 34678899999999999999999999999999999999999765 454 999999998222200 12233
Q ss_pred HHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccchhHH
Q 000307 1130 VLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVC 1209 (1690)
Q Consensus 1130 aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc 1209 (1690)
++|+... + -|- +=+++.|..+|..++.++.|++.++++.. ||+ +.+..|+-
T Consensus 1519 VFeRAcq-y-cd~-------~~V~~~L~~iy~k~ek~~~A~ell~~m~K--------------KF~------q~~~vW~~ 1569 (1710)
T KOG1070|consen 1519 VFERACQ-Y-CDA-------YTVHLKLLGIYEKSEKNDEADELLRLMLK--------------KFG------QTRKVWIM 1569 (1710)
T ss_pred HHHHHHH-h-cch-------HHHHHHHHHHHHHhhcchhHHHHHHHHHH--------------Hhc------chhhHHHH
Confidence 3433322 2 233 55899999999999999999997777763 332 45566754
Q ss_pred HHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHHHHHHH
Q 000307 1210 CVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIW 1289 (1690)
Q Consensus 1210 ~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tKLN~IR 1289 (1690)
.+++++..+..++|-.+ +.-|+.+.-. .--+.+|+
T Consensus 1570 ----------y~~fLl~~ne~~aa~~l------------------L~rAL~~lPk-----------------~eHv~~Is 1604 (1710)
T KOG1070|consen 1570 ----------YADFLLRQNEAEAAREL------------------LKRALKSLPK-----------------QEHVEFIS 1604 (1710)
T ss_pred ----------HHHHHhcccHHHHHHHH------------------HHHHHhhcch-----------------hhhHHHHH
Confidence 35666666655555444 2233222210 11234577
Q ss_pred HHHHhc----chHHHHHHHHHHHHhCCCcchhHHHHHHHhhccCCC-ccHHHHHHHHHh--CCCCCchhHHHHHHHHHHH
Q 000307 1290 CMAVLN----GLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGD-LSSVGFEEALIK--WPKGVPGIQCIWNQYVEYA 1362 (1690)
Q Consensus 1290 q~I~lE----dse~al~LfdklLe~~P~d~eL~L~AayL~~k~m~e-~Ai~vfe~aL~~--~PkNa~g~qcaW~QLiq~A 1362 (1690)
.++.+| |.+.+..||+-+|..||.=.+|+++...|.++.... ....+||.++++ .|+.+.-.--.|.+|=..-
T Consensus 1605 kfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~ 1684 (1710)
T KOG1070|consen 1605 KFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSH 1684 (1710)
T ss_pred HHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhc
Confidence 777666 999999999999999999999977777777776333 445999999764 5666665455666665554
Q ss_pred HhcCChhHHHHHHHHHHHHHh
Q 000307 1363 LQNGRHDFAAELMDRWFHSVW 1383 (1690)
Q Consensus 1363 l~~e~~d~ai~L~~~ff~gia 1383 (1690)
=..++.+.|..=+.+|..++.
T Consensus 1685 Gde~~vE~VKarA~EYv~s~~ 1705 (1710)
T KOG1070|consen 1685 GDEKNVEYVKARAKEYVESIK 1705 (1710)
T ss_pred CchhhHHHHHHHHHHHHHHhh
Confidence 455667777777777777654
No 88
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.74 E-value=0.017 Score=73.56 Aligned_cols=390 Identities=17% Similarity=0.130 Sum_probs=231.0
Q ss_pred ccccccccchhh----hhhhhhchh----hhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Q 000307 1009 RQSSFFRSRNGV----LNKLKQVEL----SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEAD--PTSEILWITYLL 1078 (1690)
Q Consensus 1009 ~~~rYF~~~~d~----in~Le~~~~----d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEIN--PtSAeaWyeyl~ 1078 (1690)
+...||....+. ..++|+..- ..+.|--+|+-+..- |.--+|.+||+.++-+- |....++.+-+.
T Consensus 327 d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saa-----g~~s~Av~ll~~~~~~~~~ps~~s~~Lmask 401 (799)
T KOG4162|consen 327 DHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAA-----GSDSKAVNLLRESLKKSEQPSDISVLLMASK 401 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHh-----ccchHHHHHHHhhcccccCCCcchHHHHHHH
Confidence 445555555554 336676663 338888888877544 44589999999999999 888888877777
Q ss_pred HHHhC-CCCchHHHHHHHHHh--------cCCCCHH-HHHHHHh---cCCCcccchHHHHHHHHHHHHhhhcCCCCcchh
Q 000307 1079 IFYSN-TNSVGKDDMFSYSVK--------HNEGSYA-LWLMYIN---SRTPLNHRLDAYDAALSVLCRCASASDGDEMHA 1145 (1690)
Q Consensus 1079 lY~~~-~~~~ea~emfekAVe--------laP~NY~-Lw~mYIN---sr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~ 1145 (1690)
+++.+ +..+++.++-.+|+. +.|..|- ++-.|-. +....+.|+.--.+++++|++.+... +..
T Consensus 402 lc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~d--- 477 (799)
T KOG4162|consen 402 LCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTD--- 477 (799)
T ss_pred HHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCC---
Confidence 77665 558899999999998 3344444 4444433 23567788888899999999988876 665
Q ss_pred hhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccch--hHHHH----HHHhhccc
Q 000307 1146 SACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIF--WVCCV----YLVIYRKL 1219 (1690)
Q Consensus 1146 Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~A--wLc~i----Ydl~YrvL 1219 (1690)
.++++++.--|.-+++.+.|.+.+.+... +++... -..+-=+..+++...+-.. .|++. |-.+|..|
T Consensus 478 ----p~~if~lalq~A~~R~l~sAl~~~~eaL~--l~~~~~-~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~ 550 (799)
T KOG4162|consen 478 ----PLVIFYLALQYAEQRQLTSALDYAREALA--LNRGDS-AKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLM 550 (799)
T ss_pred ----chHHHHHHHHHHHHHhHHHHHHHHHHHHH--hcCCcc-HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhc
Confidence 68899999999999999999888888775 522221 2223333344444444333 22111 12222222
Q ss_pred cHHHHhhc--cchhhhhcC------CCC-----------------------CcccchhhhhhHHHHHHHHHHHHHhhcCC
Q 000307 1220 PDAVLQLL--ECEKELFAI------DWP-----------------------PVQLEDDEKQRAIKLIEMAVNSVELYSNG 1268 (1690)
Q Consensus 1220 PGd~y~qn--e~~KEAf~I------~W~-----------------------yvqvlkdEPdnalAL~smA~dYY~~~~nd 1268 (1690)
-+.+-.+. |...|++.. -|. ...-.++-+.+-..+.+++...-.. .|.
T Consensus 551 ~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~-~~s 629 (799)
T KOG4162|consen 551 DGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKS-AGS 629 (799)
T ss_pred hhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhh-ccc
Confidence 22221111 112222111 011 2222222333334444443222222 121
Q ss_pred cch-hhhh--cccchhHHHHHHHHHHHH-----hcchHHHHHHHHHHHHhCCCcchh-HHHHHHHhhccCCCccHHHHHH
Q 000307 1269 ESL-EKET--NLRSAHCFAVNHIWCMAV-----LNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEE 1339 (1690)
Q Consensus 1269 Esl-a~~~--n~k~d~~tKLN~IRq~I~-----lEdse~al~LfdklLe~~P~d~eL-~L~AayL~~k~m~e~Ai~vfe~ 1339 (1690)
+.. .... ......-+++..|...++ ..-...+..-+.++=+.+|.++.+ -+-+.-+..++.-++|...|..
T Consensus 630 e~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 630 ELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred ccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 111 0000 111111122222222322 224444554555667888999998 6666666666667899999999
Q ss_pred HHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHH--HHHHHHHHHhhhcccccccchhhcccCCCCCCCCCCCCCccccc
Q 000307 1340 ALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAE--LMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSV 1417 (1690)
Q Consensus 1340 aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~--L~~~ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~ 1417 (1690)
||.++|+.++ +=--+.+..++.|+...+.. ++ .|+++.+.. +.+-.
T Consensus 710 Al~ldP~hv~----s~~Ala~~lle~G~~~la~~~~~L-----------------~dalr~dp~----------n~eaW- 757 (799)
T KOG4162|consen 710 ALALDPDHVP----SMTALAELLLELGSPRLAEKRSLL-----------------SDALRLDPL----------NHEAW- 757 (799)
T ss_pred HHhcCCCCcH----HHHHHHHHHHHhCCcchHHHHHHH-----------------HHHHhhCCC----------CHHHH-
Confidence 9999999999 55566777777765555444 33 245552211 12422
Q ss_pred ccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhccCC
Q 000307 1418 SNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1459 (1690)
Q Consensus 1418 ~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N 1459 (1690)
=+||-++-+ +|+.+.|-+-|+.|++..+.+
T Consensus 758 ----------~~LG~v~k~--~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 758 ----------YYLGEVFKK--LGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred ----------HHHHHHHHH--ccchHHHHHHHHHHHhhccCC
Confidence 367889999 999999999999999988755
No 89
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.73 E-value=0.00019 Score=68.01 Aligned_cols=97 Identities=18% Similarity=0.114 Sum_probs=84.8
Q ss_pred HHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCH----
Q 000307 1032 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS---EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY---- 1104 (1690)
Q Consensus 1032 qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtS---AeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY---- 1104 (1690)
+.+..+|..++.+ |+++.|...|.++++.+|++ +.+++.++.+|+..+...+|..+|+.+++..|++-
T Consensus 3 ~~~~~~~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 77 (119)
T TIGR02795 3 EAYYDAALLVLKA-----GDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPD 77 (119)
T ss_pred HHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccH
Confidence 4567777777776 78999999999999999987 68999999999999999999999999999998851
Q ss_pred ---HHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCc
Q 000307 1105 ---ALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDE 1142 (1690)
Q Consensus 1105 ---~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr 1142 (1690)
.++.+|...+ .+++|+..|.++...+ |+.
T Consensus 78 ~~~~~~~~~~~~~--------~~~~A~~~~~~~~~~~-p~~ 109 (119)
T TIGR02795 78 ALLKLGMSLQELG--------DKEKAKATLQQVIKRY-PGS 109 (119)
T ss_pred HHHHHHHHHHHhC--------ChHHHHHHHHHHHHHC-cCC
Confidence 1788899888 9999999999998887 554
No 90
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.71 E-value=0.00024 Score=85.34 Aligned_cols=109 Identities=17% Similarity=0.312 Sum_probs=98.5
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHHH
Q 000307 1050 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1125 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYd 1125 (1690)
++++.|+++|.+-.+.+|+ +++.++.+|...++..+|...+.+|++.+|.++. .+.++++.+ .|+
T Consensus 183 ~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~--------~~~ 251 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK--------KYE 251 (395)
T ss_pred ccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--------CHH
Confidence 5689999999999999975 6777999999999999999999999999999999 567788999 999
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhc
Q 000307 1126 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1177 (1690)
Q Consensus 1126 rAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLE 1177 (1690)
.|+.+..+.+... |+. .+...+|+++|.+.|++++|+.+||-+=
T Consensus 252 lAL~iAk~av~ls-P~~-------f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 252 LALEIAKKAVELS-PSE-------FETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHhC-chh-------HHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999888888 888 8999999999999999999999887554
No 91
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.0003 Score=81.37 Aligned_cols=107 Identities=11% Similarity=0.061 Sum_probs=96.5
Q ss_pred hhhhhchhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC---CchHHHHHHHHHh
Q 000307 1022 NKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN---SVGKDDMFSYSVK 1098 (1690)
Q Consensus 1022 n~Le~~~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~---~~ea~emfekAVe 1098 (1690)
.+|-+.|.|.+.|.-|+--|+.+ ++++.|+..|.+|+.+.|+++++|--|+..+|.+.+ ..++.+||.+|++
T Consensus 147 ~~L~~nP~d~egW~~Lg~~ym~~-----~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 147 THLQQNPGDAEGWDLLGRAYMAL-----GRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred HHHHhCCCCchhHHHHHHHHHHh-----cchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 47788899999999999999998 788999999999999999999999999998887766 5678899999999
Q ss_pred cCCCCHH----HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCC
Q 000307 1099 HNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD 1141 (1690)
Q Consensus 1099 laP~NY~----Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pD 1141 (1690)
++|.|-. |+.-|...+ .|.+|+..++.|.+..+++
T Consensus 222 ~D~~~iral~lLA~~afe~g--------~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 222 LDPANIRALSLLAFAAFEQG--------DYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred cCCccHHHHHHHHHHHHHcc--------cHHHHHHHHHHHHhcCCCC
Confidence 9999988 888899999 9999999999998876343
No 92
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.64 E-value=0.00047 Score=58.91 Aligned_cols=91 Identities=12% Similarity=0.173 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhh
Q 000307 1072 LWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASA 1147 (1690)
Q Consensus 1072 aWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa 1147 (1690)
+|+.++.+|...+...++...|+++++..|.+.. ++.+|...+ .+++|+..|....... +..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~a~~~~~~~~~~~-~~~----- 67 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLG--------KYEEALEDYEKALELD-PDN----- 67 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhCC-Ccc-----
Confidence 6899999999999999999999999999998744 788888888 9999999998877766 555
Q ss_pred hhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1148 CILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1148 ~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
.+++..++.+|...|++++|+..+.+...
T Consensus 68 --~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 68 --AKAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred --hhHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 48899999999999999999998877664
No 93
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.63 E-value=0.0055 Score=76.18 Aligned_cols=313 Identities=14% Similarity=0.048 Sum_probs=186.7
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchh
Q 000307 1070 EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHA 1145 (1690)
Q Consensus 1070 AeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~ 1145 (1690)
+|+......++...+..++|++.+++.-..-+|... .+.+|+.++ .+++|..+|..+...+ ||+
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg--------~~~eA~~~y~~Li~rN-Pdn--- 71 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLG--------RKEEAEKIYRELIDRN-PDN--- 71 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHC-CCc---
Confidence 556666666777777777777777777666666555 677777777 7777777777777777 777
Q ss_pred hhhhHHHHHHHHHHHhhhc-----CHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccchhHHHHHHHhhcccc
Q 000307 1146 SACILDLFLQMLQCFCMSG-----NTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLP 1220 (1690)
Q Consensus 1146 Sa~ILDvLL~LvqLY~qSG-----nydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLP 1220 (1690)
.+.+-.+..+..... ..++.++.++.+.. .-|+......+.+-...|| ..--+.+.|...+
T Consensus 72 ----~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~-----~yp~s~~~~rl~L~~~~g~-~F~~~~~~yl~~~---- 137 (517)
T PF12569_consen 72 ----YDYYRGLEEALGLQLQLSDEDVEKLLELYDELAE-----KYPRSDAPRRLPLDFLEGD-EFKERLDEYLRPQ---- 137 (517)
T ss_pred ----HHHHHHHHHHHhhhcccccccHHHHHHHHHHHHH-----hCccccchhHhhcccCCHH-HHHHHHHHHHHHH----
Confidence 666666666664433 34444444444443 2222122222322222222 1224555552211
Q ss_pred HHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhh-cccchhHHHH---HHHHHHHH-hc
Q 000307 1221 DAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKET-NLRSAHCFAV---NHIWCMAV-LN 1295 (1690)
Q Consensus 1221 Gd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~-n~k~d~~tKL---N~IRq~I~-lE 1295 (1690)
+..|++. +|.- ... +=.+|..+-.+.+.+..|+............. ...-+..+.| .++.|..- ..
T Consensus 138 ----l~KgvPs-lF~~---lk~-Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g 208 (517)
T PF12569_consen 138 ----LRKGVPS-LFSN---LKP-LYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLG 208 (517)
T ss_pred ----HhcCCch-HHHH---HHH-HHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhC
Confidence 1122211 1111 111 11256666677777555655411111111110 0111222222 33444443 44
Q ss_pred chHHHHHHHHHHHHhCCCcchh-HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHH
Q 000307 1296 GLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAEL 1374 (1690)
Q Consensus 1296 dse~al~LfdklLe~~P~d~eL-~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L 1374 (1690)
+.+.|+.+.++.++..|+.+++ +++|--+...|-..+|...++.|-++++.+-- +=...+.+.++.+.+++|..+
T Consensus 209 ~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRy----iNsK~aKy~LRa~~~e~A~~~ 284 (517)
T PF12569_consen 209 DYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRY----INSKCAKYLLRAGRIEEAEKT 284 (517)
T ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHH----HHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999 77777777777677999999999999999988 888889999999999999999
Q ss_pred HHHHHHHHhhhcccccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHH---HHHHHHhhhcChHHHHHHHHH
Q 000307 1375 MDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYL---NLSLHRLLQNDWNEARLAIDA 1451 (1690)
Q Consensus 1375 ~~~ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~L---GD~Lyq~Lqg~~~EAf~AYDk 1451 (1690)
+.-|- +.+..+ .+|.+ .-|+| ||+ |.+|++ +|++..|..-|..
T Consensus 285 ~~~Ft-----------------r~~~~~---------~~~L~--~mQc~----Wf~~e~a~a~~r--~~~~~~ALk~~~~ 330 (517)
T PF12569_consen 285 ASLFT-----------------REDVDP---------LSNLN--DMQCM----WFETECAEAYLR--QGDYGLALKRFHA 330 (517)
T ss_pred HHhhc-----------------CCCCCc---------ccCHH--HHHHH----HHHHHHHHHHHH--HhhHHHHHHHHHH
Confidence 95421 111111 23333 12333 554 448888 9999999877666
Q ss_pred HHhh
Q 000307 1452 ALKA 1455 (1690)
Q Consensus 1452 ALk~ 1455 (1690)
.++.
T Consensus 331 v~k~ 334 (517)
T PF12569_consen 331 VLKH 334 (517)
T ss_pred HHHH
Confidence 6543
No 94
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.51 E-value=0.00016 Score=64.14 Aligned_cols=61 Identities=11% Similarity=0.196 Sum_probs=55.2
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHHHH
Q 000307 1049 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLM 1109 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw~m 1109 (1690)
.|+++.|+.+|.++++.+|+++++++.|+.+|+..++..+|..+|+++++.+|++-.++.+
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999986444443
No 95
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.50 E-value=0.0075 Score=75.52 Aligned_cols=303 Identities=18% Similarity=0.204 Sum_probs=192.9
Q ss_pred CchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchH
Q 000307 1047 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLD 1122 (1690)
Q Consensus 1047 n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~ 1122 (1690)
++.|+-+.|++.-.++|.+|+.|.+-|-.|+.+|-.-+...++.-+|.-|.+..|+|-. |+.+=+..|
T Consensus 52 ~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmR-------- 123 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMR-------- 123 (700)
T ss_pred hcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH--------
Confidence 57899999999999999999999999999999999999999999999999999999988 445555555
Q ss_pred HHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccH-----------
Q 000307 1123 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFL----------- 1191 (1690)
Q Consensus 1123 aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSL----------- 1191 (1690)
.|+-....=-++-... +.. +..|| -.+--+--.|+|..|+..++..+++...+.+...+.-
T Consensus 124 d~~~~~~tr~~LLql~-~~~--ra~w~-----~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~ 195 (700)
T KOG1156|consen 124 DYEGYLETRNQLLQLR-PSQ--RASWI-----GFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQIL 195 (700)
T ss_pred hhhhHHHHHHHHHHhh-hhh--HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH
Confidence 4443333222222222 332 22222 2233344468899999999888875543333211111
Q ss_pred ------HHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHH--------
Q 000307 1192 ------SDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEM-------- 1257 (1690)
Q Consensus 1192 ------sKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~sm-------- 1257 (1690)
.+.+..|+...++++ -.+.|....+++++..+..+||..+ |..++.-+|||.-....+
T Consensus 196 ~E~g~~q~ale~L~~~e~~i~-----Dkla~~e~ka~l~~kl~~lEeA~~~---y~~Ll~rnPdn~~Yy~~l~~~lgk~~ 267 (700)
T KOG1156|consen 196 IEAGSLQKALEHLLDNEKQIV-----DKLAFEETKADLLMKLGQLEEAVKV---YRRLLERNPDNLDYYEGLEKALGKIK 267 (700)
T ss_pred HHcccHHHHHHHHHhhhhHHH-----HHHHHhhhHHHHHHHHhhHHhHHHH---HHHHHhhCchhHHHHHHHHHHHHHHh
Confidence 122222222222222 0567788888999999999999888 888888888886432222
Q ss_pred ----HH-HHHHh-----------------hcCCcchhhhh--------cc--------------c---c-----------
Q 000307 1258 ----AV-NSVEL-----------------YSNGESLEKET--------NL--------------R---S----------- 1279 (1690)
Q Consensus 1258 ----A~-dYY~~-----------------~~ndEsla~~~--------n~--------------k---~----------- 1279 (1690)
++ .-|.. +.+++++.... .+ . .
T Consensus 268 d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~ 347 (700)
T KOG1156|consen 268 DMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQ 347 (700)
T ss_pred hhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHH
Confidence 11 01110 01111111110 00 0 0
Q ss_pred ---------------hhHHHHHHHHH---HHH-hc---chHHHHHHHHHHHHhCCCcchhHHHHHHHhhcc-CCCccHHH
Q 000307 1280 ---------------AHCFAVNHIWC---MAV-LN---GLECSMNLLEKYIKLYPSCLELVLMKARLQKHD-FGDLSSVG 1336 (1690)
Q Consensus 1280 ---------------d~~tKLN~IRq---~I~-lE---dse~al~LfdklLe~~P~d~eL~L~AayL~~k~-m~e~Ai~v 1336 (1690)
.++-+..++.+ ++. .+ +.+.|..+.+.++...|+=+|+-++-++|.+.. ..+.|..-
T Consensus 348 ~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~ 427 (700)
T KOG1156|consen 348 HSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAW 427 (700)
T ss_pred hhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHH
Confidence 01111112222 222 22 788899999999999999999966666766655 45577778
Q ss_pred HHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHH
Q 000307 1337 FEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1377 (1690)
Q Consensus 1337 fe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ 1377 (1690)
+++|=+.+--+.- |=--++.|.++.+..++|.++|..
T Consensus 428 l~ea~elD~aDR~----INsKcAKYmLrAn~i~eA~~~~sk 464 (700)
T KOG1156|consen 428 LDEAQELDTADRA----INSKCAKYMLRANEIEEAEEVLSK 464 (700)
T ss_pred HHHHHhccchhHH----HHHHHHHHHHHccccHHHHHHHHH
Confidence 8888888776665 333556778999999999999855
No 96
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0011 Score=76.84 Aligned_cols=116 Identities=11% Similarity=0.099 Sum_probs=99.3
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHH------HHHHhcCCCcccch
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALW------LMYINSRTPLNHRL 1121 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw------~mYINsr~s~ddrl 1121 (1690)
.....++...-|..-|.-||++++=|..++.+|+.++.-..+...|.+|++++|+|-.++ +||..-. .
T Consensus 134 ~~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~-----~- 207 (287)
T COG4235 134 AEQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQ-----Q- 207 (287)
T ss_pred CcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC-----c-
Confidence 345578888999999999999999999999999999999999999999999999999933 3333322 1
Q ss_pred HHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1122 DAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1122 ~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
+-.+|..+|.+..+.. |+. .-.+.+|.--|-++|+|..|+.++..|+.
T Consensus 208 -~ta~a~~ll~~al~~D-~~~-------iral~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 208 -MTAKARALLRQALALD-PAN-------IRALSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred -ccHHHHHHHHHHHhcC-Ccc-------HHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 3457777887777766 888 89999999999999999999999999996
No 97
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.48 E-value=0.00054 Score=78.20 Aligned_cols=99 Identities=11% Similarity=0.031 Sum_probs=88.0
Q ss_pred hhHHHHHHHHHH-hccccCchhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH
Q 000307 1030 SNEQCVEMALLI-LNQDANKLEGMKKALSLLSRALEADPTS---EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1105 (1690)
Q Consensus 1030 d~qlWl~lAl~~-Lnq~~n~~g~yDAALdLLsrALEINPtS---AeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~ 1105 (1690)
+...|...|+.+ +.+ ++|+.|+..|...++.+|++ +.+||.++.+|+..+...+|...|+++|+..|++-+
T Consensus 141 ~e~~~Y~~A~~l~~~~-----~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~ 215 (263)
T PRK10803 141 DANTDYNAAIALVQDK-----SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK 215 (263)
T ss_pred CHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence 557788888865 444 78999999999999999998 689999999999999999999999999999998755
Q ss_pred -------HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCc
Q 000307 1106 -------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDE 1142 (1690)
Q Consensus 1106 -------Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr 1142 (1690)
++..|...+ .+++|+..|+.+.+.+ |+.
T Consensus 216 ~~dAl~klg~~~~~~g--------~~~~A~~~~~~vi~~y-P~s 250 (263)
T PRK10803 216 AADAMFKVGVIMQDKG--------DTAKAKAVYQQVIKKY-PGT 250 (263)
T ss_pred hhHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHC-cCC
Confidence 677888888 9999999999999998 775
No 98
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.47 E-value=0.0012 Score=68.79 Aligned_cols=106 Identities=9% Similarity=-0.011 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH--
Q 000307 1031 NEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS---EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-- 1105 (1690)
Q Consensus 1031 ~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtS---AeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~-- 1105 (1690)
...|.-+|..+... |+++.|+..|.+||++.|.. +.+|+.++.+|...+..++|..+|++|++..|.+-.
T Consensus 35 a~~~~~~g~~~~~~-----g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~ 109 (168)
T CHL00033 35 AFTYYRDGMSAQSE-----GEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQAL 109 (168)
T ss_pred HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 47788888777655 77999999999999998763 469999999999999999999999999999988766
Q ss_pred --HHHHHHhcC------CCcccchHHHHHHHHHHHHhhhcCCCCc
Q 000307 1106 --LWLMYINSR------TPLNHRLDAYDAALSVLCRCASASDGDE 1142 (1690)
Q Consensus 1106 --Lw~mYINsr------~s~ddrl~aYdrAI~aLe~las~~~pDr 1142 (1690)
++.+|.+.+ ..++..+..|++|+..|++..... |+.
T Consensus 110 ~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~-p~~ 153 (168)
T CHL00033 110 NNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALA-PGN 153 (168)
T ss_pred HHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhC-ccc
Confidence 666666433 234444556778888888877776 654
No 99
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.47 E-value=0.0013 Score=69.18 Aligned_cols=108 Identities=10% Similarity=0.078 Sum_probs=83.8
Q ss_pred hhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH
Q 000307 1029 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS---EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1105 (1690)
Q Consensus 1029 ~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtS---AeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~ 1105 (1690)
.....+..+|..++.. |+++.|+..|.++++++|+. +.+|+.++.+|...+..+++..++++|++..|.+..
T Consensus 33 ~~a~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 107 (172)
T PRK02603 33 KEAFVYYRDGMSAQAD-----GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS 107 (172)
T ss_pred hhHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence 3445566666666554 88999999999999998874 579999999999999999999999999999998877
Q ss_pred ----HHHHHHhcCC------CcccchHHHHHHHHHHHHhhhcCCCCc
Q 000307 1106 ----LWLMYINSRT------PLNHRLDAYDAALSVLCRCASASDGDE 1142 (1690)
Q Consensus 1106 ----Lw~mYINsr~------s~ddrl~aYdrAI~aLe~las~~~pDr 1142 (1690)
++.+|...+. .++..+..|++|+++|.+..... |+.
T Consensus 108 ~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~-p~~ 153 (172)
T PRK02603 108 ALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA-PNN 153 (172)
T ss_pred HHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC-chh
Confidence 6677777652 23444555788888887766655 554
No 100
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.46 E-value=0.0054 Score=76.05 Aligned_cols=246 Identities=20% Similarity=0.127 Sum_probs=138.3
Q ss_pred hhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccchhHHHHH-HHhhcc-ccHHH
Q 000307 1146 SACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY-LVIYRK-LPDAV 1223 (1690)
Q Consensus 1146 Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iY-dl~Yrv-LPGd~ 1223 (1690)
.+..+-++..++..|..+|+|++|+. +.. + .+++ .|+.|- ..| ++.=.. -.|.+
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~----l~k--------~-----Al~~------l~k~~G-~~hl~va~~l~~~a~~ 250 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEP----LCK--------Q-----ALRI------LEKTSG-LKHLVVASMLNILALV 250 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHH----HHH--------H-----HHHH------HHHccC-ccCHHHHHHHHHHHHH
Confidence 33448889999999999999999998 332 1 1111 111111 122 222222 36788
Q ss_pred HhhccchhhhhcCCCCCcccch--------hhhhhHHHHHHHHHHHHHhhcCCcchhhhh-------cc----cchhHHH
Q 000307 1224 LQLLECEKELFAIDWPPVQLED--------DEKQRAIKLIEMAVNSVELYSNGESLEKET-------NL----RSAHCFA 1284 (1690)
Q Consensus 1224 y~qne~~KEAf~I~W~yvqvlk--------dEPdnalAL~smA~dYY~~~~ndEsla~~~-------n~----k~d~~tK 1284 (1690)
|+..++.+||..+ |...+. +.|.-+..+..+|+-||+. |+-.-+... .+ ......+
T Consensus 251 y~~~~k~~eAv~l---y~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~--GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 251 YRSLGKYDEAVNL---YEEALTIREEVFGEDHPAVAATLNNLAVLYYKQ--GKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHhccHHHHHHH---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc--CChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 8888888888777 776664 4899999999999888873 433322221 00 1111122
Q ss_pred HHHHHHHHH----hcchHHHHHHHHHHHHhCC---Ccch--h-----HHHHHHHhhccCCCccHHHHHHHHHhC----CC
Q 000307 1285 VNHIWCMAV----LNGLECSMNLLEKYIKLYP---SCLE--L-----VLMKARLQKHDFGDLSSVGFEEALIKW----PK 1346 (1690)
Q Consensus 1285 LN~IRq~I~----lEdse~al~LfdklLe~~P---~d~e--L-----~L~AayL~~k~m~e~Ai~vfe~aL~~~----Pk 1346 (1690)
.. +.-+++ .++.+++..|+.+.++++- .+.+ + -|...|+.+.+ .++|...|++||++. =+
T Consensus 326 ~~-l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk-~~ea~~~~k~ai~~~~~~~~~ 403 (508)
T KOG1840|consen 326 AQ-LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGK-YKEAEELYKKAIQILRELLGK 403 (508)
T ss_pred HH-HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHhcccC
Confidence 21 111111 2266666666666555442 2222 1 34444455544 556666666666655 33
Q ss_pred CCchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcccccccchhhcccCCCCCCCCCCCCCcccccccccchhhh
Q 000307 1347 GVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVM 1426 (1690)
Q Consensus 1347 Na~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~ 1426 (1690)
...|..-.-+|+.....+.+++..+.++..+ +.++. + .++ .| .-|.+
T Consensus 404 ~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~--------------~~~i~-~--~~g---------~~-------~~~~~ 450 (508)
T KOG1840|consen 404 KDYGVGKPLNQLAEAYEELKKYEEAEQLFEE--------------AKDIM-K--LCG---------PD-------HPDVT 450 (508)
T ss_pred cChhhhHHHHHHHHHHHHhcccchHHHHHHH--------------HHHHH-H--HhC---------CC-------CCchH
Confidence 3333333334555544555555555555533 33333 1 111 11 22466
Q ss_pred hHHHHH--HHHHhhhcChHHHHHHHHHHHhhcc
Q 000307 1427 FGYLNL--SLHRLLQNDWNEARLAIDAALKAAA 1457 (1690)
Q Consensus 1427 fa~LGD--~Lyq~Lqg~~~EAf~AYDkALk~np 1457 (1690)
|.|.|+ .|-. +|+.++|+..-++++.|..
T Consensus 451 ~~~~nL~~~Y~~--~g~~e~a~~~~~~~~~~~~ 481 (508)
T KOG1840|consen 451 YTYLNLAALYRA--QGNYEAAEELEEKVLNARE 481 (508)
T ss_pred HHHHHHHHHHHH--cccHHHHHHHHHHHHHHHH
Confidence 789999 6667 9999999999999987764
No 101
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.017 Score=70.40 Aligned_cols=293 Identities=14% Similarity=0.104 Sum_probs=166.7
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCC-CHH-----HHHHHHhcCCCcccch
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG-SYA-----LWLMYINSRTPLNHRL 1121 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~-NY~-----Lw~mYINsr~s~ddrl 1121 (1690)
+.+..+.|.+.|-.++---|=.=.+|-++..+ .++ .++...-|-.-|. +-| +...|....
T Consensus 176 ~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~l----it~---~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~------- 241 (559)
T KOG1155|consen 176 ELGLLSLAIDSFVEVVNRYPWFWSAWLELSEL----ITD---IEILSILVVGLPSDMHWMKKFFLKKAYQELH------- 241 (559)
T ss_pred hhchHHHHHHHHHHHHhcCCcchHHHHHHHHh----hch---HHHHHHHHhcCcccchHHHHHHHHHHHHHHH-------
Confidence 44556778888888777778888888888777 222 2455555544443 333 444454444
Q ss_pred HHHHHHHHHHHHhhhc-CCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHH----
Q 000307 1122 DAYDAALSVLCRCASA-SDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILT---- 1196 (1690)
Q Consensus 1122 ~aYdrAI~aLe~las~-~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~---- 1196 (1690)
.-++|++-+++++.. + +.. .=+--+.+-++--+.++++||...+.|.. +. ..-|.+|-+
T Consensus 242 -q~~e~~~k~e~l~~~gf-~~~-------~~i~~~~A~~~y~~rDfD~a~s~Feei~k------nD-PYRl~dmdlySN~ 305 (559)
T KOG1155|consen 242 -QHEEALQKKERLSSVGF-PNS-------MYIKTQIAAASYNQRDFDQAESVFEEIRK------ND-PYRLDDMDLYSNV 305 (559)
T ss_pred -HHHHHHHHHHHHHhccC-Ccc-------HHHHHHHHHHHhhhhhHHHHHHHHHHHHh------cC-CCcchhHHHHhHH
Confidence 678888888888776 5 444 34455677788888999999999988885 33 344444443
Q ss_pred -HhccCCccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhh
Q 000307 1197 -CLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKET 1275 (1690)
Q Consensus 1197 -YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~ 1275 (1690)
|......++.-|+..= .++|+=++--.--- .+||.. .+
T Consensus 306 LYv~~~~skLs~LA~~v-------------------------------~~idKyR~ETCCiI-aNYYSl-r~-------- 344 (559)
T KOG1155|consen 306 LYVKNDKSKLSYLAQNV-------------------------------SNIDKYRPETCCII-ANYYSL-RS-------- 344 (559)
T ss_pred HHHHhhhHHHHHHHHHH-------------------------------HHhccCCccceeee-hhHHHH-HH--------
Confidence 3333333333333221 11111111111111 266653 11
Q ss_pred cccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCcchh-HHHH-HHHhhccCCCccHHHHHHHHHhCCCCCchhHH
Q 000307 1276 NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMK-ARLQKHDFGDLSSVGFEEALIKWPKGVPGIQC 1353 (1690)
Q Consensus 1276 n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d~eL-~L~A-ayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qc 1353 (1690)
+.|.|+..|++.|+++|.-.-+ +|.+ -||.+|+ ...|+..|.+|++++|.+..
T Consensus 345 --------------------eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKN-t~AAi~sYRrAvdi~p~DyR---- 399 (559)
T KOG1155|consen 345 --------------------EHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKN-THAAIESYRRAVDINPRDYR---- 399 (559)
T ss_pred --------------------hHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcc-cHHHHHHHHHHHhcCchhHH----
Confidence 4455666666666666666666 4444 4566666 55666666666666666666
Q ss_pred HHHHHHH-HHHhcCChhHHHHHHHH-----------H-HHHHhhhcc-cccccchhhcccCCCCCCCCCCCCCccccccc
Q 000307 1354 IWNQYVE-YALQNGRHDFAAELMDR-----------W-FHSVWKVQY-SQVEISDPLVADMSHSSPESTSTSDPEFSVSN 1419 (1690)
Q Consensus 1354 aW~QLiq-~Al~~e~~d~ai~L~~~-----------f-f~gia~~Q~-~~deALD~lr~g~s~i~~es~s~~vSDfy~~~ 1419 (1690)
+|+=|-| +++-+- .-=++-..++ | -+|=+|.+. ..++|+..+.+....... ..+-|
T Consensus 400 AWYGLGQaYeim~M-h~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt------e~~~l--- 469 (559)
T KOG1155|consen 400 AWYGLGQAYEIMKM-HFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT------EGSAL--- 469 (559)
T ss_pred HHhhhhHHHHHhcc-hHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc------chHHH---
Confidence 6665555 333221 1111111111 1 122222222 555666655544332211 24556
Q ss_pred ccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhc
Q 000307 1420 RNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAA 1456 (1690)
Q Consensus 1420 ~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~n 1456 (1690)
..||+.|-+ .++.+||-.+|+|+++.-
T Consensus 470 --------~~LakLye~--l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 470 --------VRLAKLYEE--LKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred --------HHHHHHHHH--HHhHHHHHHHHHHHHHHH
Confidence 889999999 899999999999999843
No 102
>PLN02789 farnesyltranstransferase
Probab=97.42 E-value=0.0017 Score=76.10 Aligned_cols=127 Identities=13% Similarity=0.077 Sum_probs=88.8
Q ss_pred hhhhchhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC---CCC----chHHHHHHH
Q 000307 1023 KLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSN---TNS----VGKDDMFSY 1095 (1690)
Q Consensus 1023 ~Le~~~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~---~~~----~ea~emfek 1095 (1690)
-|+..+.+..+|-..+..+-+. |.|+.|+..+.++|++||.+..+|++...+.... ++. +...+++.+
T Consensus 134 al~~dpkNy~AW~~R~w~l~~l-----~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~ 208 (320)
T PLN02789 134 ILSLDAKNYHAWSHRQWVLRTL-----GGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTID 208 (320)
T ss_pred HHHhCcccHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHH
Confidence 3455566667887777655544 6699999999999999999999999999887765 222 356788999
Q ss_pred HHhcCCCCHHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhh
Q 000307 1096 SVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCM 1162 (1690)
Q Consensus 1096 AVelaP~NY~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~q 1162 (1690)
|++.+|+|+..|.+....=......+..+.+|+++.++..... ..|+..+++ |+++|+.
T Consensus 209 aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-----~~s~~al~~---l~d~~~~ 267 (320)
T PLN02789 209 AILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-----SNHVFALSD---LLDLLCE 267 (320)
T ss_pred HHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-----CCcHHHHHH---HHHHHHh
Confidence 9999999998775544433222233456777888887755432 245555544 4566654
No 103
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.41 E-value=0.0015 Score=73.94 Aligned_cols=158 Identities=16% Similarity=0.122 Sum_probs=124.4
Q ss_pred hhhhchhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCC
Q 000307 1023 KLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG 1102 (1690)
Q Consensus 1023 ~Le~~~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~ 1102 (1690)
-|+..|.....|+-||.-|--+ |..+.|...|.+||.++|++..|+-.|+-+.+.++..+++..+|++|++- |
T Consensus 61 AL~~DPs~~~a~~~~A~~Yq~~-----Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~-P- 133 (250)
T COG3063 61 ALEHDPSYYLAHLVRAHYYQKL-----GENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD-P- 133 (250)
T ss_pred HHHhCcccHHHHHHHHHHHHHc-----CChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC-C-
Confidence 6777888899999999988777 55599999999999999999999999999999999999999999999973 2
Q ss_pred CHH--------HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHH
Q 000307 1103 SYA--------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRIS 1174 (1690)
Q Consensus 1103 NY~--------Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~ 1174 (1690)
.|. +++.-+..+ ..+.|-..|.+-.... |+. .-.++.|+++.--.|+|-.|-.-++
T Consensus 134 ~Y~~~s~t~eN~G~Cal~~g--------q~~~A~~~l~raL~~d-p~~-------~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 134 AYGEPSDTLENLGLCALKAG--------QFDQAEEYLKRALELD-PQF-------PPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred CCCCcchhhhhhHHHHhhcC--------CchhHHHHHHHHHHhC-cCC-------ChHHHHHHHHHHhcccchHHHHHHH
Confidence 333 777777777 5566666665544444 777 8889999999999999999999999
Q ss_pred hhcccccCCCCcccccHHHHHHHhccCCccch
Q 000307 1175 RLLIPATGSNDRHSLFLSDILTCLTISDKLIF 1206 (1690)
Q Consensus 1175 rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~A 1206 (1690)
+..+ .-|.+-..|.| -|++--..||+..+
T Consensus 198 ~~~~--~~~~~A~sL~L-~iriak~~gd~~~a 226 (250)
T COG3063 198 RYQQ--RGGAQAESLLL-GIRIAKRLGDRAAA 226 (250)
T ss_pred HHHh--cccccHHHHHH-HHHHHHHhccHHHH
Confidence 9887 44444312322 34455555666554
No 104
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.34 E-value=0.0015 Score=67.06 Aligned_cols=115 Identities=25% Similarity=0.203 Sum_probs=88.0
Q ss_pred chHHHHHHHHHHHHhCCCcc--hh---HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhH
Q 000307 1296 GLECSMNLLEKYIKLYPSCL--EL---VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDF 1370 (1690)
Q Consensus 1296 dse~al~LfdklLe~~P~d~--eL---~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ 1370 (1690)
+...+...++.+++.+|... .+ .|...++..++ .++|...|+.++...|++ ....=+++.|+...+..+++++
T Consensus 26 ~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~-~~~A~~~l~~~~~~~~d~-~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 26 DPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGD-YDEAKAALEKALANAPDP-ELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhhCCCH-HHHHHHHHHHHHHHHHcCCHHH
Confidence 88888889999999999992 22 34455555555 778999999999998666 3344578889999999999999
Q ss_pred HHHHHHHHHHHHhhhcccccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHHHHHHH
Q 000307 1371 AAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAID 1450 (1690)
Q Consensus 1371 ai~L~~~ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYD 1450 (1690)
|+.++.. +. +..+.+.++ .++||+|.. +|+.++|..+|+
T Consensus 104 Al~~L~~-------------------------~~---~~~~~~~~~-----------~~~Gdi~~~--~g~~~~A~~~y~ 142 (145)
T PF09976_consen 104 ALATLQQ-------------------------IP---DEAFKALAA-----------ELLGDIYLA--QGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHh-------------------------cc---CcchHHHHH-----------HHHHHHHHH--CCCHHHHHHHHH
Confidence 8888732 10 011122333 789999999 999999999999
Q ss_pred HHH
Q 000307 1451 AAL 1453 (1690)
Q Consensus 1451 kAL 1453 (1690)
+||
T Consensus 143 ~Al 145 (145)
T PF09976_consen 143 KAL 145 (145)
T ss_pred HhC
Confidence 996
No 105
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0029 Score=75.98 Aligned_cols=290 Identities=15% Similarity=0.077 Sum_probs=191.7
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHHHHHHhcCCCcccchHHHHHH
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAA 1127 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw~mYINsr~s~ddrl~aYdrA 1127 (1690)
+...|..||..+.-|++..|++++.|.--+..|+..+.-+++.--.++.|++.|+-.+ =..|...|-.|
T Consensus 61 k~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k-----------~~~r~~~c~~a 129 (486)
T KOG0550|consen 61 KQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSK-----------GQLREGQCHLA 129 (486)
T ss_pred HHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccc-----------cccchhhhhhh
Confidence 4567999999999999999999999999999999999998888888999999976555 12233345444
Q ss_pred HHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccchh
Q 000307 1128 LSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFW 1207 (1690)
Q Consensus 1128 I~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~Aw 1207 (1690)
+..+....... .+. +-| ...+|+.++.++-+ +.++ .
T Consensus 130 ~~~~i~A~~~~-~~~---------------~~~----~~anal~~~~~~~~----s~s~-~------------------- 165 (486)
T KOG0550|consen 130 LSDLIEAEEKL-KSK---------------QAY----KAANALPTLEKLAP----SHSR-E------------------- 165 (486)
T ss_pred hHHHHHHHHHh-hhh---------------hhh----HHhhhhhhhhcccc----cccC-C-------------------
Confidence 44442222222 111 111 23344444433332 2221 1
Q ss_pred HHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHHHHH
Q 000307 1208 VCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNH 1287 (1690)
Q Consensus 1208 Lc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tKLN~ 1287 (1690)
-=...|+.|=...++..+...+|..+ ...+++.++.|+.|+.--+.=+|-
T Consensus 166 ---pac~~a~~lka~cl~~~~~~~~a~~e---a~~ilkld~~n~~al~vrg~~~yy------------------------ 215 (486)
T KOG0550|consen 166 ---PACFKAKLLKAECLAFLGDYDEAQSE---AIDILKLDATNAEALYVRGLCLYY------------------------ 215 (486)
T ss_pred ---chhhHHHHhhhhhhhhcccchhHHHH---HHHHHhcccchhHHHHhccccccc------------------------
Confidence 00234556667778888999999999 899999999999988766422222
Q ss_pred HHHHHHhcchHHHHHHHHHHHHhCCCcchh-------------HHHHHHHhhccCCCccHHHHHHHHHhCCCCCc-hhHH
Q 000307 1288 IWCMAVLNGLECSMNLLEKYIKLYPSCLEL-------------VLMKARLQKHDFGDLSSVGFEEALIKWPKGVP-GIQC 1353 (1690)
Q Consensus 1288 IRq~I~lEdse~al~LfdklLe~~P~d~eL-------------~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~-g~qc 1353 (1690)
+.+.+.+++-|.+.|.+.|.+-+. .+-+--+-+++--..|-..|.++|.++|.|+. -..|
T Consensus 216 ------~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl 289 (486)
T KOG0550|consen 216 ------NDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL 289 (486)
T ss_pred ------ccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence 113344445555666666665554 11122222233233566789999999999998 7778
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcccccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHH
Q 000307 1354 IWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLS 1433 (1690)
Q Consensus 1354 aW~QLiq~Al~~e~~d~ai~L~~~ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~ 1433 (1690)
.|++-+-+ +.-++..++|.-|.. |+. +. +-| +-++|--.
T Consensus 290 Y~nra~v~-~rLgrl~eaisdc~~--------------Al~--------iD---------~sy---------ikall~ra 328 (486)
T KOG0550|consen 290 YGNRALVN-IRLGRLREAISDCNE--------------ALK--------ID---------SSY---------IKALLRRA 328 (486)
T ss_pred HHHhHhhh-cccCCchhhhhhhhh--------------hhh--------cC---------HHH---------HHHHHHHH
Confidence 88876664 456688888888844 222 21 223 23677777
Q ss_pred HHHhhhcChHHHHHHHHHHHhhccCCcHHHHHHHHH
Q 000307 1434 LHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHA 1469 (1690)
Q Consensus 1434 Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYA 1469 (1690)
.+.++.+.++||..-|++|++..-+-.....|++=.
T Consensus 329 ~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~ 364 (486)
T KOG0550|consen 329 NCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQ 364 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence 778889999999999999999888754567777644
No 106
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.33 E-value=0.0015 Score=83.33 Aligned_cols=176 Identities=14% Similarity=0.105 Sum_probs=128.3
Q ss_pred chHHHHHHHHHHHHhCCCcchh-HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHH
Q 000307 1296 GLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAEL 1374 (1690)
Q Consensus 1296 dse~al~LfdklLe~~P~d~eL-~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L 1374 (1690)
-..+++.=+..|...||.+++. .|+|.-.+..+-.++|...|+.++++.|++.. +|.-++..+.+.+++++|...
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~----a~~~~a~~L~~~~~~eeA~~~ 142 (694)
T PRK15179 67 KPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSE----AFILMLRGVKRQQGIEAGRAE 142 (694)
T ss_pred chHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHHhccHHHHHHH
Confidence 4455555666778889999998 66666666666688999999999999999999 999999999999999999999
Q ss_pred HHH------------HHHHHhhhcc-cccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHH--HHHHhhh
Q 000307 1375 MDR------------WFHSVWKVQY-SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNL--SLHRLLQ 1439 (1690)
Q Consensus 1375 ~~~------------ff~gia~~Q~-~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD--~Lyq~Lq 1439 (1690)
+++ +-.+++-.+. .+++|++.+++...+.+. ..+ ++++. +|-. .
T Consensus 143 ~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~------~~~-------------~~~~~a~~l~~--~ 201 (694)
T PRK15179 143 IELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPE------FEN-------------GYVGWAQSLTR--R 201 (694)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC------cHH-------------HHHHHHHHHHH--c
Confidence 988 5556665555 899999999977664421 112 34444 5666 7
Q ss_pred cChHHHHHHHHHHHhhccCCcHHHHHHHHHHHHh--------c--CCCCCCcccchhhhHHHHHHHHhh
Q 000307 1440 NDWNEARLAIDAALKAAASEHFKHCVREHAMLLL--------I--NESEPKEGAPISWQLKLLNSYLDR 1498 (1690)
Q Consensus 1440 g~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLS--------l--e~~dL~KAEqMS~~~KtVsTYLDT 1498 (1690)
|+.++|.+||++|+....+. ..-++||+.=|. + ++.--.+..++-.+.++|--|=|+
T Consensus 202 G~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 202 GALWRARDVLQAGLDAIGDG--ARKLTRRLVDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred CCHHHHHHHHHHHHHhhCcc--hHHHHHHHHHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 99999999999999999987 566666654332 2 333344445555545666555554
No 107
>PRK11906 transcriptional regulator; Provisional
Probab=97.29 E-value=0.004 Score=75.93 Aligned_cols=130 Identities=12% Similarity=0.058 Sum_probs=101.3
Q ss_pred HHHHHHHHHHhcccc--CchhhHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHhC----C-C----CchHHHHHHHHH
Q 000307 1032 EQCVEMALLILNQDA--NKLEGMKKALSLLSRAL---EADPTSEILWITYLLIFYSN----T-N----SVGKDDMFSYSV 1097 (1690)
Q Consensus 1032 qlWl~lAl~~Lnq~~--n~~g~yDAALdLLsrAL---EINPtSAeaWyeyl~lY~~~----~-~----~~ea~emfekAV 1097 (1690)
+.||.-++.+--... ...+..++|+.+|.||+ ++||.-+.+|..++-.+..+ . . ..++.+..++||
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 788777755444443 34677899999999999 99999999988888777665 1 1 345678899999
Q ss_pred hcCCCCHH-H---HHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHH
Q 000307 1098 KHNEGSYA-L---WLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRI 1173 (1690)
Q Consensus 1098 elaP~NY~-L---w~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL 1173 (1690)
+++|.|-. + +...-..+ .++.|+..|++...-+ |+- -+.+++..-+..+.|+.+.|+..+
T Consensus 332 eld~~Da~a~~~~g~~~~~~~--------~~~~a~~~f~rA~~L~-Pn~-------A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 332 DITTVDGKILAIMGLITGLSG--------QAKVSHILFEQAKIHS-TDI-------ASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred hcCCCCHHHHHHHHHHHHhhc--------chhhHHHHHHHHhhcC-Ccc-------HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999887 3 33333444 4777888887776666 887 899999999999999999999999
Q ss_pred Hhhc
Q 000307 1174 SRLL 1177 (1690)
Q Consensus 1174 ~rLE 1177 (1690)
++-.
T Consensus 396 ~~al 399 (458)
T PRK11906 396 DKSL 399 (458)
T ss_pred HHHh
Confidence 8844
No 108
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.29 E-value=0.0019 Score=79.67 Aligned_cols=253 Identities=14% Similarity=0.052 Sum_probs=147.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHHH
Q 000307 1050 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1125 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYd 1125 (1690)
|.+-.|.-+|.-|..-||..++||..|+..-....++..|...+++|++++|+|-. |+--|+|.+ .=.
T Consensus 299 G~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg--------~q~ 370 (579)
T KOG1125|consen 299 GDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG--------LQN 370 (579)
T ss_pred CCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh--------hHH
Confidence 55677888899999999999999999999999999999999999999999999998 889999999 778
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHH-HhccCCcc
Q 000307 1126 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILT-CLTISDKL 1204 (1690)
Q Consensus 1126 rAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~-YLt~sDkc 1204 (1690)
.|+.+|+.-...+ |-..+ . ++...+.... ..++.-. ...+.+|+. ||.+.--.
T Consensus 371 ~Al~~L~~Wi~~~-p~y~~----------------l-------~~a~~~~~~~-~~~s~~~-~~~l~~i~~~fLeaa~~~ 424 (579)
T KOG1125|consen 371 QALKMLDKWIRNK-PKYVH----------------L-------VSAGENEDFE-NTKSFLD-SSHLAHIQELFLEAARQL 424 (579)
T ss_pred HHHHHHHHHHHhC-ccchh----------------c-------cccCcccccc-CCcCCCC-HHHHHHHHHHHHHHHHhC
Confidence 8999998876655 32200 0 0000000000 0001110 111222221 11100000
Q ss_pred chhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHH
Q 000307 1205 IFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFA 1284 (1690)
Q Consensus 1205 ~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tK 1284 (1690)
.. .=+..-+.-+|-+|--.+..+.+.+. +..+|..+|++..-==.++
T Consensus 425 ~~----~~DpdvQ~~LGVLy~ls~efdraiDc---f~~AL~v~Pnd~~lWNRLG-------------------------- 471 (579)
T KOG1125|consen 425 PT----KIDPDVQSGLGVLYNLSGEFDRAVDC---FEAALQVKPNDYLLWNRLG-------------------------- 471 (579)
T ss_pred CC----CCChhHHhhhHHHHhcchHHHHHHHH---HHHHHhcCCchHHHHHHhh--------------------------
Confidence 00 00112233345555555555555555 4555555555443332222
Q ss_pred HHHHHHHHH-hcchHHHHHHHHHHHHhCCCcchh--HHHHHHHhhccCCCccHHHHHHHHHhCCCCCc----hh--HHHH
Q 000307 1285 VNHIWCMAV-LNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVP----GI--QCIW 1355 (1690)
Q Consensus 1285 LN~IRq~I~-lEdse~al~LfdklLe~~P~d~eL--~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~----g~--qcaW 1355 (1690)
--.+ -+.+++|++-+.++|++.|.=+-. -|--.+|.+.. -++|+.-|..||.+-++... ++ --||
T Consensus 472 -----AtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~-ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw 545 (579)
T KOG1125|consen 472 -----ATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA-YKEAVKHLLEALSMQRKSRNHNKAPMASENIW 545 (579)
T ss_pred -----HHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh-HHHHHHHHHHHHHhhhcccccccCCcchHHHH
Confidence 1122 236777777788888888877777 66666666555 66777777888887777322 11 1366
Q ss_pred HHHHHHHHhcCChhHHHHHH
Q 000307 1356 NQYVEYALQNGRHDFAAELM 1375 (1690)
Q Consensus 1356 ~QLiq~Al~~e~~d~ai~L~ 1375 (1690)
..|=..++.-++.|.+...+
T Consensus 546 ~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 546 QTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHHHHHHcCCchHHHHhc
Confidence 44443444445555455544
No 109
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.014 Score=70.50 Aligned_cols=330 Identities=12% Similarity=0.049 Sum_probs=199.0
Q ss_pred CCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHH-HHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhh
Q 000307 1068 TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALW-LMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHAS 1146 (1690)
Q Consensus 1068 tSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw-~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~S 1146 (1690)
..+.++-+++.+-.-.-+..+.-.|-..+|...|.-.|+| |.|.-.. ..--.-.|.-+...+-+.-... +++
T Consensus 159 ecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq--~~~~~hs~a~~t~l~le~~~~l-r~N---- 231 (564)
T KOG1174|consen 159 ECPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQ--MFNFKHSDASQTFLMLHDNTTL-RCN---- 231 (564)
T ss_pred hcchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHH--HHhcccchhhhHHHHHHhhccC-Ccc----
Confidence 3566666777776666777788888889999998777755 3333222 0000003444444444444556 888
Q ss_pred hhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHH---HHhccCCccch--hHHH-HH-HHhhcc-
Q 000307 1147 ACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDIL---TCLTISDKLIF--WVCC-VY-LVIYRK- 1218 (1690)
Q Consensus 1147 a~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~---~YLt~sDkc~A--wLc~-iY-dl~Yrv- 1218 (1690)
.+++..++++|-..|++++||-+...-. ..++ ..+..|- .-|.+.-+|-- .|.| .+ ...|..
T Consensus 232 ---vhLl~~lak~~~~~Gdn~~a~~~Fe~~~-----~~dp--y~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~ 301 (564)
T KOG1174|consen 232 ---EHLMMALGKCLYYNGDYFQAEDIFSSTL-----CANP--DNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTAS 301 (564)
T ss_pred ---HHHHHHHhhhhhhhcCchHHHHHHHHHh-----hCCh--hhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchh
Confidence 9999999999999999999998654433 2333 2223333 33444444432 2222 22 111111
Q ss_pred ---ccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHH-------HHHH
Q 000307 1219 ---LPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFA-------VNHI 1288 (1690)
Q Consensus 1219 ---LPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tK-------LN~I 1288 (1690)
.-+.++....+-.-|+.+ -.+...-||.+.-+++-.+ ....+...-+..... =|.++-++ --++
T Consensus 302 ~wfV~~~~l~~~K~~~rAL~~---~eK~I~~~~r~~~alilKG-~lL~~~~R~~~A~Ia--FR~Aq~Lap~rL~~Y~GL~ 375 (564)
T KOG1174|consen 302 HWFVHAQLLYDEKKFERALNF---VEKCIDSEPRNHEALILKG-RLLIALERHTQAVIA--FRTAQMLAPYRLEIYRGLF 375 (564)
T ss_pred hhhhhhhhhhhhhhHHHHHHH---HHHHhccCcccchHHHhcc-HHHHhccchHHHHHH--HHHHHhcchhhHHHHHHHH
Confidence 111111111222233333 2223333455554444443 222220111111111 22222222 1345
Q ss_pred HHHHHhcchHHHHHHHHHHHHhCCCcchh-HHHHHH--HhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhc
Q 000307 1289 WCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKAR--LQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQN 1365 (1690)
Q Consensus 1289 Rq~I~lEdse~al~LfdklLe~~P~d~eL-~L~Aay--L~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~ 1365 (1690)
-+|.+.....+|+-+....|..-|.++.- .|+++- +-.--|-+.|...++..|.+.|...+ +=+-+++.....
T Consensus 376 hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~----AV~~~AEL~~~E 451 (564)
T KOG1174|consen 376 HSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTP----AVNLIAELCQVE 451 (564)
T ss_pred HHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHH----HHHHHHHHHHhh
Confidence 56666558888888888899999998887 777543 33334455788899999999999999 888999988889
Q ss_pred CChhHHHHHHHHHHHHHhhhcccccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHH
Q 000307 1366 GRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEA 1445 (1690)
Q Consensus 1366 e~~d~ai~L~~~ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EA 1445 (1690)
|.+..+|.|++++.. .+ +| |..--.|||++-- .+..+||
T Consensus 452 g~~~D~i~LLe~~L~--------------~~----------------~D---------~~LH~~Lgd~~~A--~Ne~Q~a 490 (564)
T KOG1174|consen 452 GPTKDIIKLLEKHLI--------------IF----------------PD---------VNLHNHLGDIMRA--QNEPQKA 490 (564)
T ss_pred CccchHHHHHHHHHh--------------hc----------------cc---------cHHHHHHHHHHHH--hhhHHHH
Confidence 999999999987321 11 23 1233688998888 9999999
Q ss_pred HHHHHHHHhhccCCcHHHHHHH
Q 000307 1446 RLAIDAALKAAASEHFKHCVRE 1467 (1690)
Q Consensus 1446 f~AYDkALk~np~N~~i~cLNN 1467 (1690)
.+-|-+||..+|.+ ...+.-
T Consensus 491 m~~y~~ALr~dP~~--~~sl~G 510 (564)
T KOG1174|consen 491 MEYYYKALRQDPKS--KRTLRG 510 (564)
T ss_pred HHHHHHHHhcCccc--hHHHHH
Confidence 99999999999988 666543
No 110
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.27 E-value=0.00029 Score=65.76 Aligned_cols=76 Identities=14% Similarity=0.225 Sum_probs=67.2
Q ss_pred hhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchH
Q 000307 1049 LEGMKKALSLLSRALEADPT--SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLD 1122 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEINPt--SAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~ 1122 (1690)
.++|+.|+-++.++++.+|+ ++.+|+.++.+|++.++-..|.+.+.+ .+++|.+.. ++..|+.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~-------- 72 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLG-------- 72 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT--------
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhC--------
Confidence 37899999999999999996 578899999999999999999999999 888887755 888899999
Q ss_pred HHHHHHHHHHH
Q 000307 1123 AYDAALSVLCR 1133 (1690)
Q Consensus 1123 aYdrAI~aLe~ 1133 (1690)
.|++||.+|++
T Consensus 73 ~y~eAi~~l~~ 83 (84)
T PF12895_consen 73 KYEEAIKALEK 83 (84)
T ss_dssp -HHHHHHHHHH
T ss_pred CHHHHHHHHhc
Confidence 99999999965
No 111
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.24 E-value=0.01 Score=71.68 Aligned_cols=276 Identities=10% Similarity=0.018 Sum_probs=171.8
Q ss_pred hhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhCCCC--chHHHHHHHHHhcCCCCHHH
Q 000307 1030 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEA-DPTSEILWITYLLIFYSNTNS--VGKDDMFSYSVKHNEGSYAL 1106 (1690)
Q Consensus 1030 d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEI-NPtSAeaWyeyl~lY~~~~~~--~ea~emfekAVelaP~NY~L 1106 (1690)
-++|=|--|-.+|-+ |++..|+.+|.--=.- |.+.+.+--.+..+|+-+++. ..++.+...||-.+-.|-.
T Consensus 418 a~dlei~ka~~~lk~-----~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~- 491 (840)
T KOG2003|consen 418 AIDLEINKAGELLKN-----GDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAA- 491 (840)
T ss_pred hhhhhhhHHHHHHhc-----cCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHH-
Confidence 335555556666655 6788888888644333 344455555555555444443 3455677777766644332
Q ss_pred HHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCc
Q 000307 1107 WLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDR 1186 (1690)
Q Consensus 1107 w~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE 1186 (1690)
++ .|++ -..-.--.|++|+++|-+..... ..- ++.|+-..--|...||.+.|+.-+.+|-. +--.+-
T Consensus 492 a~--~nkg-n~~f~ngd~dka~~~ykeal~nd-asc-------~ealfniglt~e~~~~ldeald~f~klh~--il~nn~ 558 (840)
T KOG2003|consen 492 AL--TNKG-NIAFANGDLDKAAEFYKEALNND-ASC-------TEALFNIGLTAEALGNLDEALDCFLKLHA--ILLNNA 558 (840)
T ss_pred Hh--hcCC-ceeeecCcHHHHHHHHHHHHcCc-hHH-------HHHHHHhcccHHHhcCHHHHHHHHHHHHH--HHHhhH
Confidence 11 1221 11111117999999995543322 222 77888888889999999999998776653 333443
Q ss_pred ccccHHHHHHHhccCCccch--hHHHHH-----HHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHH
Q 000307 1187 HSLFLSDILTCLTISDKLIF--WVCCVY-----LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAV 1259 (1690)
Q Consensus 1187 ~~lSLsKi~~YLt~sDkc~A--wLc~iY-----dl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~ 1259 (1690)
+...+..-+|+.+.|...| ||.... +..-..-++++|++-|.+..||.. +-....-=|.|.-.+-=+|
T Consensus 559 -evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~---~ydsyryfp~nie~iewl~- 633 (840)
T KOG2003|consen 559 -EVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQC---HYDSYRYFPCNIETIEWLA- 633 (840)
T ss_pred -HHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhh---hhhcccccCcchHHHHHHH-
Confidence 5566666678888887777 777665 455555667777777777777776 2222222233333332232
Q ss_pred HHHHhhcCCcchhhhhcccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCcchh-HHHHHHHhhccCCCccHHHHH
Q 000307 1260 NSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFE 1338 (1690)
Q Consensus 1260 dYY~~~~ndEsla~~~n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d~eL-~L~AayL~~k~m~e~Ai~vfe 1338 (1690)
.|| |-..=++.++++|++.--.-|.-..- +++|.-++..+--..|+..|.
T Consensus 634 ayy-----------------------------idtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk 684 (840)
T KOG2003|consen 634 AYY-----------------------------IDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYK 684 (840)
T ss_pred HHH-----------------------------HhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 232 21225788889999988888888877 777777777776778889999
Q ss_pred HHHHhCCCCCchhHHHHHHHHHHH
Q 000307 1339 EALIKWPKGVPGIQCIWNQYVEYA 1362 (1690)
Q Consensus 1339 ~aL~~~PkNa~g~qcaW~QLiq~A 1362 (1690)
++-..-|.+.. |+. -|+..+
T Consensus 685 ~~hrkfpedld---clk-flvri~ 704 (840)
T KOG2003|consen 685 DIHRKFPEDLD---CLK-FLVRIA 704 (840)
T ss_pred HHHHhCccchH---HHH-HHHHHh
Confidence 99999999988 554 344443
No 112
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.23 E-value=0.0021 Score=78.34 Aligned_cols=132 Identities=14% Similarity=0.059 Sum_probs=110.6
Q ss_pred HHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HH
Q 000307 1032 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LW 1107 (1690)
Q Consensus 1032 qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw 1107 (1690)
.+|--.|+.++.- +.+|.|+.+|.--+..-|+|+-.|-....++...++..+|.+++++|+.+.|++++ ++
T Consensus 307 aa~YG~A~~~~~~-----~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 307 AAQYGRALQTYLA-----GQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred HHHHHHHHHHHHh-----cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 4555555555543 67899999999999999999999999999999999999999999999999999998 66
Q ss_pred HHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCc
Q 000307 1108 LMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDR 1186 (1690)
Q Consensus 1108 ~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE 1186 (1690)
.+|++.+ .+.+||..|-+..... |+. -+...+|++-|..+|+..+|..... |..+..|.-+
T Consensus 382 ~all~~g--------~~~eai~~L~~~~~~~-p~d-------p~~w~~LAqay~~~g~~~~a~~A~A--E~~~~~G~~~ 442 (484)
T COG4783 382 QALLKGG--------KPQEAIRILNRYLFND-PED-------PNGWDLLAQAYAELGNRAEALLARA--EGYALAGRLE 442 (484)
T ss_pred HHHHhcC--------ChHHHHHHHHHHhhcC-CCC-------chHHHHHHHHHHHhCchHHHHHHHH--HHHHhCCCHH
Confidence 7788888 8889999998877777 777 7889999999999999888876443 3334666665
No 113
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.21 E-value=0.0054 Score=76.08 Aligned_cols=189 Identities=15% Similarity=0.069 Sum_probs=133.0
Q ss_pred HHHHHhccccCchhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH---
Q 000307 1037 MALLILNQDANKLEGMKKALSLLSRALEA--------DPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--- 1105 (1690)
Q Consensus 1037 lAl~~Lnq~~n~~g~yDAALdLLsrALEI--------NPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~--- 1105 (1690)
+|-.|..+ |+|+.|..++.+||++ .|.=+...--++.+|..+++..+|..+|++|+..-...|.
T Consensus 205 La~~y~~~-----g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 205 LAEMYAVQ-----GRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHh-----ccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44444444 8899999999999999 7776777777999999999999999999999987754444
Q ss_pred ---------HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhh
Q 000307 1106 ---------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRL 1176 (1690)
Q Consensus 1106 ---------Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rL 1176 (1690)
|+-.|.+. ..|++...=|++|+..++...... +.+ +--.|..+..+++..++++.|+. |
T Consensus 280 ~~va~~l~nLa~ly~~~-GKf~EA~~~~e~Al~I~~~~~~~~-~~~------v~~~l~~~~~~~~~~~~~Eea~~----l 347 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQ-GKFAEAEEYCERALEIYEKLLGAS-HPE------VAAQLSELAAILQSMNEYEEAKK----L 347 (508)
T ss_pred HHHHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHHhhccC-hHH------HHHHHHHHHHHHHHhcchhHHHH----H
Confidence 45555444 588888889999999998855544 222 35567778889999999999998 5
Q ss_pred cccccCCCCcccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchh--------hh
Q 000307 1177 LIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDD--------EK 1248 (1690)
Q Consensus 1177 Eq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkd--------EP 1248 (1690)
++ + .+..+..+....+-+++. +..=+|.+|..-|+.+||..+ +.+.+.. ++
T Consensus 348 ~q--------~--al~i~~~~~g~~~~~~a~--------~~~nl~~l~~~~gk~~ea~~~---~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 348 LQ--------K--ALKIYLDAPGEDNVNLAK--------IYANLAELYLKMGKYKEAEEL---YKKAIQILRELLGKKDY 406 (508)
T ss_pred HH--------H--HHHHHHhhccccchHHHH--------HHHHHHHHHHHhcchhHHHHH---HHHHHHHHHhcccCcCh
Confidence 54 2 222333333333334443 333457788888999998887 5555332 45
Q ss_pred hhHHHHHHHHHHHHH
Q 000307 1249 QRAIKLIEMAVNSVE 1263 (1690)
Q Consensus 1249 dnalAL~smA~dYY~ 1263 (1690)
..+..+--||.+|++
T Consensus 407 ~~~~~l~~la~~~~~ 421 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEE 421 (508)
T ss_pred hhhHHHHHHHHHHHH
Confidence 555666666655555
No 114
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.18 E-value=0.0031 Score=59.86 Aligned_cols=96 Identities=16% Similarity=0.113 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCH-------HHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCc
Q 000307 1070 EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY-------ALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDE 1142 (1690)
Q Consensus 1070 AeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY-------~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr 1142 (1690)
+.++|..+..+...++..++.+.|+++++..|++. .++..|...+ .|+.|+..|......+ |+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~~~~~-p~~ 72 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQG--------KYADAAKAFLAVVKKY-PKS 72 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhc--------cHHHHHHHHHHHHHHC-CCC
Confidence 46889999999999999999999999999998762 2888999999 9999999999988766 442
Q ss_pred chhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1143 MHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1143 ~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
....++++.+..+|...|++++|+..+.++..
T Consensus 73 ----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 73 ----PKAPDALLKLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred ----CcccHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 12267899999999999999999999998885
No 115
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.16 E-value=0.00061 Score=61.22 Aligned_cols=56 Identities=21% Similarity=0.303 Sum_probs=53.9
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH
Q 000307 1050 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1105 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~ 1105 (1690)
++|+.|+.++.++++++|+++.+|+.++.+|...+...+|.+.|+++++++|++-.
T Consensus 9 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 9 EDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred CCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 67899999999999999999999999999999999999999999999999997766
No 116
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.15 E-value=0.011 Score=76.49 Aligned_cols=134 Identities=13% Similarity=0.109 Sum_probs=91.4
Q ss_pred HHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHhcCCCCHH----HHHHH
Q 000307 1036 EMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN-SVGKDDMFSYSVKHNEGSYA----LWLMY 1110 (1690)
Q Consensus 1036 ~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~-~~ea~emfekAVelaP~NY~----Lw~mY 1110 (1690)
|-||+-.-+.. -..+|+.|+.-..+.|+-||++-.+|++++..+...++ .+++.+.|..|++++|+|-- ||.+|
T Consensus 3 K~aLK~Ak~al-~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLy 81 (1238)
T KOG1127|consen 3 KTALKSAKDAL-RNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLY 81 (1238)
T ss_pred hhHHHHHHHHH-hhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHH
Confidence 33444444433 12579999999999999999999999999999999999 89999999999999999976 88888
Q ss_pred HhcC--CCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHH
Q 000307 1111 INSR--TPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRI 1173 (1690)
Q Consensus 1111 INsr--~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL 1173 (1690)
-.-. ..+++--..|.+++..|++.-... -+..---..|...+.-+++.++..+.+-+.+.
T Consensus 82 e~~~dIl~ld~~~~~yq~~~l~le~q~~nk---~~~lcKk~~d~~~~fk~hll~a~eigei~~tr 143 (1238)
T KOG1127|consen 82 ERYNDILDLDRAAKCYQRAVLILENQSKNK---GEALCKKFDDQYYQFKKHLLVAKEIGEIAVTR 143 (1238)
T ss_pred HccchhhhhhHhHHHHHHHHHhhhhhhhhH---HHHHHHHHhhHHHHHHHHHHhhHHHHHHHhch
Confidence 7622 334455556677776665443110 00001112344455555556666666666554
No 117
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.10 E-value=0.0033 Score=75.68 Aligned_cols=113 Identities=19% Similarity=0.191 Sum_probs=96.4
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHH
Q 000307 1049 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAY 1124 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aY 1124 (1690)
.++-.+|+.+|.++-.+=|++|.++..++.+|-+-+.++.+-++.-....|-|.|.. |+.+||... -.
T Consensus 571 led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtq--------f~ 642 (840)
T KOG2003|consen 571 LEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQ--------FS 642 (840)
T ss_pred hhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhH--------HH
Confidence 455678899999999999999999999999998888888888877777888888875 889999999 88
Q ss_pred HHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhc
Q 000307 1125 DAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1177 (1690)
Q Consensus 1125 drAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLE 1177 (1690)
++||..||+.+--. |.. .-+-++.+-|+.++|||++|+.++..+-
T Consensus 643 ekai~y~ekaaliq-p~~-------~kwqlmiasc~rrsgnyqka~d~yk~~h 687 (840)
T KOG2003|consen 643 EKAINYFEKAALIQ-PNQ-------SKWQLMIASCFRRSGNYQKAFDLYKDIH 687 (840)
T ss_pred HHHHHHHHHHHhcC-ccH-------HHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 99999998877766 665 6677888999999999999999876655
No 118
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.10 E-value=0.0015 Score=77.07 Aligned_cols=79 Identities=10% Similarity=0.058 Sum_probs=72.2
Q ss_pred hhhhchhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCC
Q 000307 1023 KLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG 1102 (1690)
Q Consensus 1023 ~Le~~~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~ 1102 (1690)
-|+..+.+.++|+.+|.-++.. |+++.|+..|.+||+++|+.+.+|+.++.+|+.++...+|...|++|++++|+
T Consensus 28 Al~~~P~~~~a~~~~a~~~~~~-----g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 28 AIDLDPNNAELYADRAQANIKL-----GNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPG 102 (356)
T ss_pred HHHhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 4556667789999999888776 88999999999999999999999999999999999999999999999999999
Q ss_pred CHHH
Q 000307 1103 SYAL 1106 (1690)
Q Consensus 1103 NY~L 1106 (1690)
+..+
T Consensus 103 ~~~~ 106 (356)
T PLN03088 103 DSRF 106 (356)
T ss_pred CHHH
Confidence 8873
No 119
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.08 E-value=0.0069 Score=62.18 Aligned_cols=109 Identities=12% Similarity=0.073 Sum_probs=89.6
Q ss_pred hhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH-------HHHHHHhcCCCcc
Q 000307 1049 LEGMKKALSLLSRALEADPTS---EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-------LWLMYINSRTPLN 1118 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEINPtS---AeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~-------Lw~mYINsr~s~d 1118 (1690)
.++.+++-..+...++-+|.+ .-+++.++..++..+.-+++.+.|+.+++..|+... |+.+|+..+
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~---- 99 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQG---- 99 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC----
Confidence 355677777888889999998 788999999999999999999999999999876643 899999999
Q ss_pred cchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHH
Q 000307 1119 HRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRIS 1174 (1690)
Q Consensus 1119 drl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~ 1174 (1690)
.|++|+..|... ... +-. -.+...+.++|...|++++|+..+.
T Consensus 100 ----~~d~Al~~L~~~-~~~-~~~-------~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 100 ----QYDEALATLQQI-PDE-AFK-------ALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred ----CHHHHHHHHHhc-cCc-chH-------HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999552 111 112 3466679999999999999998653
No 120
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.02 E-value=0.0053 Score=66.11 Aligned_cols=104 Identities=15% Similarity=0.160 Sum_probs=82.0
Q ss_pred HHHHHHhC-CCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHHHHHHHHHHH
Q 000307 1059 LSRALEAD-PTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCR 1133 (1690)
Q Consensus 1059 LsrALEIN-PtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYdrAI~aLe~ 1133 (1690)
|.-...+. ++.=+..|.|+-.+++.++-.+|..+|+.++.++|.|+. |+.+|...+ .|.+||.+|..
T Consensus 23 l~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g--------~~~~AI~aY~~ 94 (157)
T PRK15363 23 LRMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQK--------HWGEAIYAYGR 94 (157)
T ss_pred HHHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh--------hHHHHHHHHHH
Confidence 33445677 777788888888888888888888888888888888766 788888888 88888888877
Q ss_pred hhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1134 CASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1134 las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
...-. ++- -...+.+.++|.+-|+.++|+..+..-..
T Consensus 95 A~~L~-~dd-------p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 95 AAQIK-IDA-------PQAPWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHhcC-CCC-------chHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77766 666 67788888888888888888886665544
No 121
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.01 E-value=0.0044 Score=70.96 Aligned_cols=97 Identities=15% Similarity=0.037 Sum_probs=84.3
Q ss_pred CHHHHHHHHHH-HHhCCCCchHHHHHHHHHhcCCCC-------HHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCC
Q 000307 1069 SEILWITYLLI-FYSNTNSVGKDDMFSYSVKHNEGS-------YALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDG 1140 (1690)
Q Consensus 1069 SAeaWyeyl~l-Y~~~~~~~ea~emfekAVelaP~N-------Y~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~p 1140 (1690)
++..+|..+.- +...+...++...|++.++..|++ |||+..|.+.+ .|+.|+..|...+..+ |
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g--------~~~~A~~~f~~vv~~y-P 211 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKG--------KKDDAAYYFASVVKNY-P 211 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHC-C
Confidence 45788888774 466788889999999999999987 77999999999 9999999999999888 5
Q ss_pred CcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1141 DEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1141 Dr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
+ |...-|.++.+..+|...|++++|+.++..+..
T Consensus 212 ~----s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 212 K----SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred C----CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5 234589999999999999999999999988874
No 122
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.01 E-value=0.0029 Score=76.27 Aligned_cols=93 Identities=22% Similarity=0.224 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HH
Q 000307 1032 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LW 1107 (1690)
Q Consensus 1032 qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw 1107 (1690)
+.++-||-.++.. ++-.+|+.++.++|..+|.+++++...+.++..+++.+.|...+.+||++.|+++. |+
T Consensus 201 ev~~~LA~v~l~~-----~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La 275 (395)
T PF09295_consen 201 EVAVLLARVYLLM-----NEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLA 275 (395)
T ss_pred cHHHHHHHHHHhc-----CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 5566666555543 22378999999999999999999999999999999999999999999999999997 88
Q ss_pred HHHHhcCCCcccchHHHHHHHHHHHHhhhc
Q 000307 1108 LMYINSRTPLNHRLDAYDAALSVLCRCASA 1137 (1690)
Q Consensus 1108 ~mYINsr~s~ddrl~aYdrAI~aLe~las~ 1137 (1690)
..||..+ .|+.||.++..+.-.
T Consensus 276 ~~Yi~~~--------d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 276 ECYIQLG--------DFENALLALNSCPML 297 (395)
T ss_pred HHHHhcC--------CHHHHHHHHhcCcCC
Confidence 9999999 999999999776544
No 123
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.91 E-value=0.11 Score=66.99 Aligned_cols=336 Identities=12% Similarity=0.014 Sum_probs=185.3
Q ss_pred hhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC-------CchHHHHHHHHHhcC
Q 000307 1028 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN-------SVGKDDMFSYSVKHN 1100 (1690)
Q Consensus 1028 ~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~-------~~ea~emfekAVela 1100 (1690)
++...+|++.+-..++-..+ +.-..+..+|.+|| .|-.+..+|.+|+.|++..++ ....+..|++|.+..
T Consensus 144 pl~~~lWl~Wl~d~~~mt~s--~~~~~v~~~~ekal-~dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~ 220 (881)
T KOG0128|consen 144 PLPPHLWLEWLKDELSMTQS--EERKEVEELFEKAL-GDYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSL 220 (881)
T ss_pred CCChHHHHHHHHHHHhhccC--cchhHHHHHHHHHh-cccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhh
Confidence 35558999998777766555 66788999999998 477899999999999998776 334568899999987
Q ss_pred CCCHH----HHHHHHhcCCCcccchHHHHH----HHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHh---------hh
Q 000307 1101 EGSYA----LWLMYINSRTPLNHRLDAYDA----ALSVLCRCASASDGDEMHASACILDLFLQMLQCFC---------MS 1163 (1690)
Q Consensus 1101 P~NY~----Lw~mYINsr~s~ddrl~aYdr----AI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~---------qS 1163 (1690)
-.-++ +|.||+... ..+.|.. .+.++..--... +|.-..--+++- +.
T Consensus 221 g~~~t~G~~~we~~~E~e-----~~~l~n~~~~qv~a~~~~el~~~-----------~D~~~~~~~~~~~sk~h~~~~~~ 284 (881)
T KOG0128|consen 221 GSHITEGAAIWEMYREFE-----VTYLCNVEQRQVIALFVRELKQP-----------LDEDTRGWDLSEQSKAHVYDVET 284 (881)
T ss_pred hhhhcccHHHHHHHHHHH-----HHHHHhHHHHHHHHHHHHHHhcc-----------chhhhhHHHHHHHHhcchHHHHh
Confidence 54454 999999987 3334433 444443322222 343333444443 44
Q ss_pred cCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccch-------hHHHHH-HHhhccccHHHHhhccchhhhhc
Q 000307 1164 GNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIF-------WVCCVY-LVIYRKLPDAVLQLLECEKELFA 1235 (1690)
Q Consensus 1164 GnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~A-------wLc~iY-dl~YrvLPGd~y~qne~~KEAf~ 1235 (1690)
.++++|+.++..++. ..-... +.--.+.+.|+..-|-|+. .|...= ..++..-++.|+...=-...-|.
T Consensus 285 ~~~~~a~~~l~~~~~--~~e~~~-q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLk 361 (881)
T KOG0128|consen 285 KKLDDALKNLAKILF--KFERLV-QKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELK 361 (881)
T ss_pred ccHHHHHHHHHHHHH--HHHHHh-hhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccc
Confidence 788888888777775 222233 3334456666666565555 222222 55555556666554322222233
Q ss_pred CCCC----CcccchhhhhhHHHHHHHHHHHHHhhcCCcchh-hhhcccch----------------hHHHHHHHHHHHH-
Q 000307 1236 IDWP----PVQLEDDEKQRAIKLIEMAVNSVELYSNGESLE-KETNLRSA----------------HCFAVNHIWCMAV- 1293 (1690)
Q Consensus 1236 I~W~----yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla-~~~n~k~d----------------~~tKLN~IRq~I~- 1293 (1690)
++=. +...+. .|-....|++-|.=..+ -+.++.. ..++...+ .|+++-....|-.
T Consensus 362 v~~~~~~~~~ra~R-~cp~tgdL~~rallAle--R~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~~~s~~~s~l 438 (881)
T KOG0128|consen 362 VPQRGVSVHPRAVR-SCPWTGDLWKRALLALE--RNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNIIDSQDYSSL 438 (881)
T ss_pred cccccccccchhhc-CCchHHHHHHHHHHHHH--hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHH
Confidence 2000 221111 22233444444311111 1111110 00000000 1222211112221
Q ss_pred hcchHHHHHHHHHHHHh--CCCcchh-HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHH-HHHHHHHHHHhcCChh
Q 000307 1294 LNGLECSMNLLEKYIKL--YPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQC-IWNQYVEYALQNGRHD 1369 (1690)
Q Consensus 1294 lEdse~al~LfdklLe~--~P~d~eL-~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qc-aW~QLiq~Al~~e~~d 1369 (1690)
-+.+..|..+|..++.. .+.+..+ +-.-.++...+-.+.++.+|..++.-- .|--. .|.++++.-.+-++..
T Consensus 439 r~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~----~~~iag~Wle~~~lE~~~g~~~ 514 (881)
T KOG0128|consen 439 RAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYG----GGSIAGKWLEAINLEREYGDGP 514 (881)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCC----cchHHHHHHHHHhHHHHhCCch
Confidence 12677777777777765 4555555 333334544444667777776665432 22233 8999999999888888
Q ss_pred HHHHHHHHHHHHHhhhcc-cccccchhhc
Q 000307 1370 FAAELMDRWFHSVWKVQY-SQVEISDPLV 1397 (1690)
Q Consensus 1370 ~ai~L~~~ff~gia~~Q~-~~deALD~lr 1397 (1690)
.+..+ .-.||.|. ..+++++++.
T Consensus 515 ~~R~~-----~R~ay~~~~~~~~~~ev~~ 538 (881)
T KOG0128|consen 515 SARKV-----LRKAYSQVVDPEDALEVLE 538 (881)
T ss_pred hHHHH-----HHHHHhcCcCchhHHHHHH
Confidence 77664 44566666 4444555543
No 124
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.022 Score=68.77 Aligned_cols=271 Identities=16% Similarity=0.086 Sum_probs=165.9
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH---HHHHHHhcCCCcccchHHHHH
Q 000307 1050 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---LWLMYINSRTPLNHRLDAYDA 1126 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~---Lw~mYINsr~s~ddrl~aYdr 1126 (1690)
-.+..+.-++-+-+..-|.+.-+...++.+|+..|...++..-|+++--.+|++-. +.-|.+..+ ++ |++
T Consensus 212 hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~e----g~---~e~ 284 (564)
T KOG1174|consen 212 HSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQE----GG---CEQ 284 (564)
T ss_pred cchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhc----cC---Hhh
Confidence 33566778888888889999999999999999999999999999999999998877 666666665 22 333
Q ss_pred HHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccch
Q 000307 1127 ALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIF 1206 (1690)
Q Consensus 1127 AI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~A 1206 (1690)
--.+-|.+-+.. +.+++.| |... +++--.++|.-|+.--.+ ++.... + .+..|++.|.--++
T Consensus 285 ~~~L~~~Lf~~~---~~ta~~w----fV~~-~~l~~~K~~~rAL~~~eK----~I~~~~-r-----~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 285 DSALMDYLFAKV---KYTASHW----FVHA-QLLYDEKKFERALNFVEK----CIDSEP-R-----NHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHHhhh---hcchhhh----hhhh-hhhhhhhhHHHHHHHHHH----HhccCc-c-----cchHHHhccHHHHh
Confidence 323333333322 1223333 3332 333345666666652222 222222 3 35555555543333
Q ss_pred ---------------hHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcch
Q 000307 1207 ---------------WVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESL 1271 (1690)
Q Consensus 1207 ---------------wLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsl 1271 (1690)
.|+-.-+=.|+-|-- -|+-.|+.|||..+ -..+.+.=|++|-+|-=.+.+-+-.+.-.-+.
T Consensus 347 ~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~h-sYLA~~~~kEA~~~---An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEK 422 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLAPYRLEIYRGLFH-SYLAQKRFKEANAL---ANWTIRLFQNSARSLTLFGTLVLFPDPRMREK 422 (564)
T ss_pred ccchHHHHHHHHHHHhcchhhHHHHHHHHH-HHHhhchHHHHHHH---HHHHHHHhhcchhhhhhhcceeeccCchhHHH
Confidence 121001334555543 46667888888776 55555566666544433221222110000111
Q ss_pred hhhh---cccc--hhHHHHHHHHHHHHhc-chHHHHHHHHHHHHhCCCcchhHHHHHHHhhccCCCccHHHHHHHHHhCC
Q 000307 1272 EKET---NLRS--AHCFAVNHIWCMAVLN-GLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWP 1345 (1690)
Q Consensus 1272 a~~~---n~k~--d~~tKLN~IRq~I~lE-dse~al~LfdklLe~~P~d~eL~L~AayL~~k~m~e~Ai~vfe~aL~~~P 1345 (1690)
++.. +.+. .---+|+.+.-+-.-| .-+-++.|++++|+-+|+|.==...+..|...+|+.+|+..|..||.++|
T Consensus 423 AKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 423 AKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 1111 1111 1222345555555544 66779999999999999765439999999999999999999999999999
Q ss_pred CCCc
Q 000307 1346 KGVP 1349 (1690)
Q Consensus 1346 kNa~ 1349 (1690)
++..
T Consensus 503 ~~~~ 506 (564)
T KOG1174|consen 503 KSKR 506 (564)
T ss_pred cchH
Confidence 9988
No 125
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.91 E-value=0.0017 Score=78.91 Aligned_cols=75 Identities=15% Similarity=0.217 Sum_probs=67.3
Q ss_pred hhchhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHhCCCCchHHHHHHHHHhcCC
Q 000307 1025 KQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEIL---WITYLLIFYSNTNSVGKDDMFSYSVKHNE 1101 (1690)
Q Consensus 1025 e~~~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAea---Wyeyl~lY~~~~~~~ea~emfekAVelaP 1101 (1690)
++.|.+.++|+.++.-+... |+|+.|+..|++||++||+++++ ||.++-.|..++..++|.+.|++|+++.+
T Consensus 69 ~~dP~~a~a~~NLG~AL~~l-----GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn 143 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSK-----GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYN 143 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 45677889999999988776 89999999999999999999965 99999999999999999999999999854
Q ss_pred CCH
Q 000307 1102 GSY 1104 (1690)
Q Consensus 1102 ~NY 1104 (1690)
..|
T Consensus 144 ~~f 146 (453)
T PLN03098 144 LKF 146 (453)
T ss_pred hhH
Confidence 444
No 126
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.91 E-value=0.036 Score=69.01 Aligned_cols=232 Identities=13% Similarity=0.123 Sum_probs=150.6
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHH
Q 000307 1074 ITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLF 1153 (1690)
Q Consensus 1074 yeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvL 1153 (1690)
|+.+.-+++.|.-.+|-=.||.||+-+|....-|+. +..--+- ...=..||.+|.+..... |++ +++|
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~-LG~~qaE---NE~E~~ai~AL~rcl~Ld-P~N-------leaL 356 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQK-LGITQAE---NENEQNAISALRRCLELD-PTN-------LEAL 356 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHH-hhhHhhh---ccchHHHHHHHHHHHhcC-Ccc-------HHHH
Confidence 566667777888888888999999999998885543 2211001 114467999999988887 999 9999
Q ss_pred HHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhh
Q 000307 1154 LQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKEL 1233 (1690)
Q Consensus 1154 L~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEA 1233 (1690)
+-|+=.|.=+|.-..|+..|+.-.. .++ -- .+......++.
T Consensus 357 maLAVSytNeg~q~~Al~~L~~Wi~-----~~p--------------------------~y--------~~l~~a~~~~~ 397 (579)
T KOG1125|consen 357 MALAVSYTNEGLQNQALKMLDKWIR-----NKP--------------------------KY--------VHLVSAGENED 397 (579)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHH-----hCc--------------------------cc--------hhccccCcccc
Confidence 9999888888888888875544332 121 10 11111122222
Q ss_pred hcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC
Q 000307 1234 FAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPS 1313 (1690)
Q Consensus 1234 f~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~ 1313 (1690)
+.- .... .+++.. +.+.+ -|.++ ..+.... ...++...|-+ .|-+..+++.++.-|..+|...|.
T Consensus 398 ~~~---~~s~--~~~~~l-~~i~~--~fLea-a~~~~~~----~DpdvQ~~LGV--Ly~ls~efdraiDcf~~AL~v~Pn 462 (579)
T KOG1125|consen 398 FEN---TKSF--LDSSHL-AHIQE--LFLEA-ARQLPTK----IDPDVQSGLGV--LYNLSGEFDRAVDCFEAALQVKPN 462 (579)
T ss_pred ccC---CcCC--CCHHHH-HHHHH--HHHHH-HHhCCCC----CChhHHhhhHH--HHhcchHHHHHHHHHHHHHhcCCc
Confidence 222 1111 122221 22211 12221 2221111 12223333331 122344889999999999999999
Q ss_pred cchh-HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHH
Q 000307 1314 CLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELM 1375 (1690)
Q Consensus 1314 d~eL-~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~ 1375 (1690)
|.-| -=++|-|.-.+-.++|+.+|.+||++-|.-+. +|+-|.-..+..|-|.+|++.+
T Consensus 463 d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR----~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 463 DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVR----VRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeee----eehhhhhhhhhhhhHHHHHHHH
Confidence 9999 55566666666689999999999999999999 9999988889999999998766
No 127
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.90 E-value=0.0024 Score=72.61 Aligned_cols=144 Identities=15% Similarity=0.208 Sum_probs=89.3
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhc--CCCCHH--------HHHHHHhc-CCC
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKH--NEGSYA--------LWLMYINS-RTP 1116 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVel--aP~NY~--------Lw~mYINs-r~s 1116 (1690)
+...|..|-.++.+ +.....++.+|..-+.+|... ...++.+++++|+++ .-+++. ++.+|.+. +
T Consensus 54 A~~ay~kAa~~~~~-~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~-- 129 (282)
T PF14938_consen 54 AAEAYEKAADCYEK-LGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLG-- 129 (282)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT---
T ss_pred hHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcC--
Confidence 34444444444444 222334566677777776555 888899999999986 223444 77777777 6
Q ss_pred cccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCc----ccccHH
Q 000307 1117 LNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDR----HSLFLS 1192 (1690)
Q Consensus 1117 ~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE----~~lSLs 1192 (1690)
.|++|++.|.+.+.-+..+. ......+++..++.+|...|+|++||..+.++-...++...- +...+.
T Consensus 130 ------d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~ 201 (282)
T PF14938_consen 130 ------DYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLK 201 (282)
T ss_dssp -------HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred ------CHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 78888888877666542222 456778999999999999999999999998876422222211 123344
Q ss_pred HHHHHhccCCc
Q 000307 1193 DILTCLTISDK 1203 (1690)
Q Consensus 1193 Ki~~YLt~sDk 1203 (1690)
.+..||.++|-
T Consensus 202 a~l~~L~~~D~ 212 (282)
T PF14938_consen 202 AILCHLAMGDY 212 (282)
T ss_dssp HHHHHHHTT-H
T ss_pred HHHHHHHcCCH
Confidence 55555555553
No 128
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.87 E-value=0.014 Score=72.71 Aligned_cols=114 Identities=13% Similarity=0.089 Sum_probs=88.1
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC--------CchHHHHHHHHHhc--CCCC---HH-HHHHHHhc
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN--------SVGKDDMFSYSVKH--NEGS---YA-LWLMYINS 1113 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~--------~~ea~emfekAVel--aP~N---Y~-Lw~mYINs 1113 (1690)
..+.+.+|..+|.+|+++||+.+.+|-.++..|..+.. -..+.+..++|+.+ +|.. |. ++.+++..
T Consensus 354 ~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~ 433 (517)
T PRK10153 354 DAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVK 433 (517)
T ss_pred CHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhc
Confidence 36778999999999999999999999998876655422 12334555666554 4433 33 77888888
Q ss_pred CCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1114 RTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1114 r~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
+ .+++|...|++..+.+ ++ -+.+..+..+|..+|+++.|+.-+.+-..
T Consensus 434 g--------~~~~A~~~l~rAl~L~-ps--------~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 434 G--------KTDEAYQAINKAIDLE-MS--------WLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred C--------CHHHHHHHHHHHHHcC-CC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8 9999999998887776 43 46899999999999999999998877554
No 129
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.86 E-value=0.021 Score=64.52 Aligned_cols=143 Identities=12% Similarity=0.107 Sum_probs=106.5
Q ss_pred hhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHH
Q 000307 1030 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILW---ITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYAL 1106 (1690)
Q Consensus 1030 d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaW---yeyl~lY~~~~~~~ea~emfekAVelaP~NY~L 1106 (1690)
+.+.+-..|...+.. |+|++|+..|..+++..|.++.+- +.++..|++.++..+|...|++.++..|++-..
T Consensus 31 ~~~~~Y~~A~~~~~~-----g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~ 105 (243)
T PRK10866 31 PPSEIYATAQQKLQD-----GNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI 105 (243)
T ss_pred CHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch
Confidence 455666777777765 889999999999999999988776 999999999999999999999999999999763
Q ss_pred H-------HHHHhcC---------CCcccchHHH-HHHHHHHHHhhhcCCCCcchh---hhhh-------HHHHHHHHHH
Q 000307 1107 W-------LMYINSR---------TPLNHRLDAY-DAALSVLCRCASASDGDEMHA---SACI-------LDLFLQMLQC 1159 (1690)
Q Consensus 1107 w-------~mYINsr---------~s~ddrl~aY-drAI~aLe~las~~~pDr~~~---Sa~I-------LDvLL~LvqL 1159 (1690)
- ..+.... ....+|+... .+|+..|.++...+ |+-... -..| -+-=+..+.+
T Consensus 106 ~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-P~S~ya~~A~~rl~~l~~~la~~e~~ia~~ 184 (243)
T PRK10866 106 DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-PNSQYTTDATKRLVFLKDRLAKYELSVAEY 184 (243)
T ss_pred HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2221111 1123344443 67999999999999 773222 1122 2223456778
Q ss_pred HhhhcCHHHHHHHHHhhcc
Q 000307 1160 FCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1160 Y~qSGnydKAI~tL~rLEq 1178 (1690)
|...|+|.-||.++..+..
T Consensus 185 Y~~~~~y~AA~~r~~~v~~ 203 (243)
T PRK10866 185 YTKRGAYVAVVNRVEQMLR 203 (243)
T ss_pred HHHcCchHHHHHHHHHHHH
Confidence 9999999999999988875
No 130
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.2 Score=62.77 Aligned_cols=269 Identities=15% Similarity=0.082 Sum_probs=136.4
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHHH
Q 000307 1050 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1125 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYd 1125 (1690)
++|..-+.++.--||.||=.+..+-..+..++..++..+--.+=-+-|+..|.+-- ++.+|+-.+ .|+
T Consensus 258 c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~--------k~s 329 (611)
T KOG1173|consen 258 CRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIG--------KYS 329 (611)
T ss_pred ChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhc--------CcH
Confidence 34455555555555555555555555444555555555433333334444444322 555555555 555
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccc
Q 000307 1126 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLI 1205 (1690)
Q Consensus 1126 rAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~ 1205 (1690)
+|-..| +++.--|.+..-|| +...+-|.-.|..++||+.+.+==+ --.|+... ..---+ .|-.+ .-
T Consensus 330 eARry~---SKat~lD~~fgpaW-----l~fghsfa~e~EhdQAmaaY~tAar-l~~G~hlP-~LYlgm-ey~~t---~n 395 (611)
T KOG1173|consen 330 EARRYF---SKATTLDPTFGPAW-----LAFGHSFAGEGEHDQAMAAYFTAAR-LMPGCHLP-SLYLGM-EYMRT---NN 395 (611)
T ss_pred HHHHHH---HHHhhcCccccHHH-----HHHhHHhhhcchHHHHHHHHHHHHH-hccCCcch-HHHHHH-HHHHh---cc
Confidence 555555 22221222222222 2445555555555555554432111 01133321 110001 11111 12
Q ss_pred hhHHHHH-HHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHH
Q 000307 1206 FWVCCVY-LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFA 1284 (1690)
Q Consensus 1206 AwLc~iY-dl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tK 1284 (1690)
..|+..| ...|.+-|-+-+.-++.--=+|.. .+-.-|...|..|+.-... .+. +++ -=-+
T Consensus 396 ~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~---------~~y~~A~~~f~~~l~~ik~-~~~--------e~~-~w~p 456 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIAPSDPLVLHELGVVAYTY---------EEYPEALKYFQKALEVIKS-VLN--------EKI-FWEP 456 (611)
T ss_pred HHHHHHHHHHHHhcCCCcchhhhhhhheeehH---------hhhHHHHHHHHHHHHHhhh-ccc--------ccc-chhH
Confidence 2445555 445555555555444422222222 3444455556655322221 111 121 1112
Q ss_pred H-HHHHHHHH-hcchHHHHHHHHHHHHhCCCcchh--HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHH
Q 000307 1285 V-NHIWCMAV-LNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVE 1360 (1690)
Q Consensus 1285 L-N~IRq~I~-lEdse~al~LfdklLe~~P~d~eL--~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq 1360 (1690)
+ +-|-.... +...++|+..|++.|.+.|.+++. .+.--|..+++ .+.|+.-|.++|-+.|+|.- +. +++.
T Consensus 457 ~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgn-ld~Aid~fhKaL~l~p~n~~----~~-~lL~ 530 (611)
T KOG1173|consen 457 TLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGN-LDKAIDHFHKALALKPDNIF----IS-ELLK 530 (611)
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC-hHHHHHHHHHHHhcCCccHH----HH-HHHH
Confidence 2 22333333 457789999999999999999999 66666777777 88999999999999999976 43 5666
Q ss_pred HHHhc
Q 000307 1361 YALQN 1365 (1690)
Q Consensus 1361 ~Al~~ 1365 (1690)
.|++.
T Consensus 531 ~aie~ 535 (611)
T KOG1173|consen 531 LAIED 535 (611)
T ss_pred HHHHh
Confidence 66654
No 131
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.79 E-value=0.0092 Score=62.82 Aligned_cols=84 Identities=8% Similarity=0.110 Sum_probs=69.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCH-----H--HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcC
Q 000307 1066 DPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY-----A--LWLMYINSRTPLNHRLDAYDAALSVLCRCASAS 1138 (1690)
Q Consensus 1066 NPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY-----~--Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~ 1138 (1690)
+|..+.+++.++.+|...+...+|.++|++|++..|+.. + ++.+|...+ .|++|+.+|.+.....
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g--------~~~~A~~~~~~al~~~ 102 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNG--------EHDKALEYYHQALELN 102 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhC
Confidence 345677889999999999999999999999999876532 2 788888888 9999999998888876
Q ss_pred CCCcchhhhhhHHHHHHHHHHHhhhcC
Q 000307 1139 DGDEMHASACILDLFLQMLQCFCMSGN 1165 (1690)
Q Consensus 1139 ~pDr~~~Sa~ILDvLL~LvqLY~qSGn 1165 (1690)
|+. .+.+..+..+|...|+
T Consensus 103 -p~~-------~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 103 -PKQ-------PSALNNIAVIYHKRGE 121 (172)
T ss_pred -ccc-------HHHHHHHHHHHHHcCC
Confidence 666 6667777888887776
No 132
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.76 E-value=0.014 Score=66.86 Aligned_cols=121 Identities=17% Similarity=0.256 Sum_probs=94.2
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCch-HHHHHHHHHhcCCCCHHHHHHHHhcCCCcccchHHHHHH
Q 000307 1049 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVG-KDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAA 1127 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~e-a~emfekAVelaP~NY~Lw~mYINsr~s~ddrl~aYdrA 1127 (1690)
.++.++|-.+|.+|++-.+....+|..+|.+.+...++.. |...||.|++.-|.+..+|+.||+.-..+ ...+.|
T Consensus 14 ~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~----~d~~~a 89 (280)
T PF05843_consen 14 TEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL----NDINNA 89 (280)
T ss_dssp HHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT----T-HHHH
T ss_pred hCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh----CcHHHH
Confidence 3568999999999998888999999999999888656555 99999999999999999999999876433 357888
Q ss_pred HHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1128 LSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1128 I~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
-.+||+..+.- +... . .-.++-..+++-..-|+++.+.....|+.+
T Consensus 90 R~lfer~i~~l-~~~~-~---~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 90 RALFERAISSL-PKEK-Q---SKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHHHHCCTS-SCHH-H---CHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-Cchh-H---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 89999887775 4431 1 345677778888888999988887767665
No 133
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.66 E-value=0.0042 Score=58.09 Aligned_cols=75 Identities=17% Similarity=0.314 Sum_probs=60.5
Q ss_pred CCCchHHHHHHHHHhcCCCC----HH--HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHH
Q 000307 1084 TNSVGKDDMFSYSVKHNEGS----YA--LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQML 1157 (1690)
Q Consensus 1084 ~~~~ea~emfekAVelaP~N----Y~--Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~Lv 1157 (1690)
+.-+.|..+|+++++.+|.+ |+ ++..|..++ .|++|+.++.+ .... +.. .+..+.++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~--------~y~~A~~~~~~-~~~~-~~~-------~~~~~l~a 65 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQG--------KYEEAIELLQK-LKLD-PSN-------PDIHYLLA 65 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTT--------HHHHHHHHHHC-HTHH-HCH-------HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCC--------CHHHHHHHHHH-hCCC-CCC-------HHHHHHHH
Confidence 44567889999999999965 44 599999999 99999999977 3333 444 67888889
Q ss_pred HHHhhhcCHHHHHHHHHh
Q 000307 1158 QCFCMSGNTEKAIQRISR 1175 (1690)
Q Consensus 1158 qLY~qSGnydKAI~tL~r 1175 (1690)
++|...|+|++||..|.+
T Consensus 66 ~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHTT-HHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhc
Confidence 999999999999998764
No 134
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.21 Score=62.24 Aligned_cols=86 Identities=12% Similarity=0.069 Sum_probs=75.6
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHH
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDA 1123 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~a 1123 (1690)
.+|+|+.|+.+|..|+.++|++.++|..-+..|...++-+++..--.++++++|+=-. ++.-.+..+ .
T Consensus 14 s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg--------~ 85 (539)
T KOG0548|consen 14 SSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG--------D 85 (539)
T ss_pred ccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc--------c
Confidence 5799999999999999999999999999999999999999999999999999974111 777777888 9
Q ss_pred HHHHHHHHHHhhhcCCCCc
Q 000307 1124 YDAALSVLCRCASASDGDE 1142 (1690)
Q Consensus 1124 YdrAI~aLe~las~~~pDr 1142 (1690)
|++|+.+|.+.-+.. |++
T Consensus 86 ~~eA~~ay~~GL~~d-~~n 103 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSN 103 (539)
T ss_pred HHHHHHHHHHHhhcC-Cch
Confidence 999999998777766 665
No 135
>PRK11906 transcriptional regulator; Provisional
Probab=96.61 E-value=0.0066 Score=74.16 Aligned_cols=95 Identities=15% Similarity=0.132 Sum_probs=80.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH-----HHH-HHHhcCCCcccchHH
Q 000307 1050 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-----LWL-MYINSRTPLNHRLDA 1123 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~-----Lw~-mYINsr~s~ddrl~a 1123 (1690)
++++.|+.+|.+|+++||+.+-+||.++.+-.-.+..++|.+.+++|++++|--.. ||. ||...+
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~--------- 422 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP--------- 422 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc---------
Confidence 55899999999999999999999999999999999999999999999999997766 898 999888
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhh-hhHHHHHHHHHHH
Q 000307 1124 YDAALSVLCRCASASDGDEMHASA-CILDLFLQMLQCF 1160 (1690)
Q Consensus 1124 YdrAI~aLe~las~~~pDr~~~Sa-~ILDvLL~LvqLY 1160 (1690)
.+.||.+| ++.. +..|+ -|.|-++.|-||-
T Consensus 423 ~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~ 453 (458)
T PRK11906 423 LKNNIKLY---YKET----ESESHRVIIDNILKLKQLT 453 (458)
T ss_pred hhhhHHHH---hhcc----ccccchhhHHHHHHHHHHH
Confidence 78999999 3333 11233 5778888777763
No 136
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.57 E-value=0.0073 Score=69.17 Aligned_cols=140 Identities=15% Similarity=0.128 Sum_probs=103.5
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCCCcchhHHHHHHHhhccCCC--ccHHHHHHHHHhCCCCCchhHHHHHHHHHHHH
Q 000307 1286 NHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGD--LSSVGFEEALIKWPKGVPGIQCIWNQYVEYAL 1363 (1690)
Q Consensus 1286 N~IRq~I~lEdse~al~LfdklLe~~P~d~eL~L~AayL~~k~m~e--~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al 1363 (1690)
.+|+++...++.+.++.+|.++++..+.+-++.+..|.|......+ .|..+||.++..-|++.. .|+.||.+++
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~----~~~~Y~~~l~ 81 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD----FWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH----HHHHHHHHHH
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHH
Confidence 5666666677999999999999988788889988889986663233 378999999999999999 9999999999
Q ss_pred hcCChhHHHHHHHHHHHHHhhhcccccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHH--HHHHhhhcC
Q 000307 1364 QNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNL--SLHRLLQND 1441 (1690)
Q Consensus 1364 ~~e~~d~ai~L~~~ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD--~Lyq~Lqg~ 1441 (1690)
..++.+.|..|.++.... ++ .+.. + ..||+ +-|+.-.|+
T Consensus 82 ~~~d~~~aR~lfer~i~~---------------------l~--------~~~~------~----~~iw~~~i~fE~~~Gd 122 (280)
T PF05843_consen 82 KLNDINNARALFERAISS---------------------LP--------KEKQ------S----KKIWKKFIEFESKYGD 122 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT---------------------SS--------CHHH------C----HHHHHHHHHHHHHHS-
T ss_pred HhCcHHHHHHHHHHHHHh---------------------cC--------chhH------H----HHHHHHHHHHHHHcCC
Confidence 999999999988772111 11 1210 1 34455 556667899
Q ss_pred hHHHHHHHHHHHhhccC-CcHHHHHHHH
Q 000307 1442 WNEARLAIDAALKAAAS-EHFKHCVREH 1468 (1690)
Q Consensus 1442 ~~EAf~AYDkALk~np~-N~~i~cLNNY 1468 (1690)
.+.....++++..+-|. +.+...++.|
T Consensus 123 l~~v~~v~~R~~~~~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 123 LESVRKVEKRAEELFPEDNSLELFSDRY 150 (280)
T ss_dssp HHHHHHHHHHHHHHTTTS-HHHHHHCCT
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence 99999999999999985 5455555555
No 137
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.56 E-value=0.012 Score=63.35 Aligned_cols=92 Identities=10% Similarity=-0.027 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----
Q 000307 1030 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---- 1105 (1690)
Q Consensus 1030 d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~---- 1105 (1690)
+-+.--.+|+..+.+ |+++.|..+|.-...+||.++.-||-|+..+-.++.-.+|.++|.+|..++|+++.
T Consensus 34 ~l~~lY~~A~~ly~~-----G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ 108 (157)
T PRK15363 34 PLNTLYRYAMQLMEV-----KEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 346777888888887 89999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHhcCCCcccchHHHHHHHHHHHHh
Q 000307 1106 LWLMYINSRTPLNHRLDAYDAALSVLCRC 1134 (1690)
Q Consensus 1106 Lw~mYINsr~s~ddrl~aYdrAI~aLe~l 1134 (1690)
++..|+..+ +.+.|..+|...
T Consensus 109 ag~c~L~lG--------~~~~A~~aF~~A 129 (157)
T PRK15363 109 AAECYLACD--------NVCYAIKALKAV 129 (157)
T ss_pred HHHHHHHcC--------CHHHHHHHHHHH
Confidence 999999999 778888877543
No 138
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.52 E-value=0.0057 Score=54.58 Aligned_cols=63 Identities=13% Similarity=0.259 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHHHHHHHHHHHhhhc
Q 000307 1068 TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASA 1137 (1690)
Q Consensus 1068 tSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~ 1137 (1690)
++|.+|+.++.+|+..++-.+|..+|++|++++|++.. ++..|..++ ..|++|+..|....+.
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~-------~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG-------KDYEEAIEDFEKALKL 67 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT-------THHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-------ccHHHHHHHHHHHHHc
Confidence 47899999999999999999999999999999998877 777888875 1588888888765544
No 139
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.51 E-value=2.1 Score=54.33 Aligned_cols=378 Identities=17% Similarity=0.121 Sum_probs=189.5
Q ss_pred HHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHhcCCCCHH---HH
Q 000307 1032 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN-SVGKDDMFSYSVKHNEGSYA---LW 1107 (1690)
Q Consensus 1032 qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~-~~ea~emfekAVelaP~NY~---Lw 1107 (1690)
-.|.+.|..= -+.|....+..+|.||+..=|.+..+|.+|...-...-. ++..++.|++|+.+.--.|. ||
T Consensus 80 gyW~kfA~~E-----~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lW 154 (577)
T KOG1258|consen 80 GYWKKFADYE-----YKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLW 154 (577)
T ss_pred HHHHHHHHHH-----HHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHH
Confidence 5566666542 346888999999999999999999999999988655433 55678999999999988888 99
Q ss_pred HHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhh------cCHHHHHHHHHhhcc-cc
Q 000307 1108 LMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMS------GNTEKAIQRISRLLI-PA 1180 (1690)
Q Consensus 1108 ~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qS------GnydKAI~tL~rLEq-~A 1180 (1690)
-.||..+ -+-..+.+-..+|++.-+.- .|. ++.++....=+..+ -..+++++.-.-+.. -.
T Consensus 155 dkyie~e----n~qks~k~v~~iyeRileiP----~~~----~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~ 222 (577)
T KOG1258|consen 155 DKYIEFE----NGQKSWKRVANIYERILEIP----LHQ----LNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSK 222 (577)
T ss_pred HHHHHHH----hccccHHHHHHHHHHHHhhh----hhH----hHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhh
Confidence 9999876 22225566666676665542 111 22222222111111 222222221000000 00
Q ss_pred cCCCCcccccHHHHHHHhccCCccch---hHHHHHHHhhccccHHHHhhcc--chhhh-hc--CCCCCcccchhhhhhHH
Q 000307 1181 TGSNDRHSLFLSDILTCLTISDKLIF---WVCCVYLVIYRKLPDAVLQLLE--CEKEL-FA--IDWPPVQLEDDEKQRAI 1252 (1690)
Q Consensus 1181 l~G~sE~~lSLsKi~~YLt~sDkc~A---wLc~iYdl~YrvLPGd~y~qne--~~KEA-f~--I~W~yvqvlkdEPdnal 1252 (1690)
+.=..+..-.++....+.|-.=+... .++.++..+ -..+|+... +.|.+ |+ |-=||.+|-..++.+..
T Consensus 223 ~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~----~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~ 298 (577)
T KOG1258|consen 223 ITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSI----HEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLK 298 (577)
T ss_pred cccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHH----HHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHH
Confidence 00000000011111111111111110 122222111 111222222 12222 22 33346666666665555
Q ss_pred HHHHHHHHHHHhhcCCcchhhhhcccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCcchhHH-HHHHHhhccCCC
Q 000307 1253 KLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVL-MKARLQKHDFGD 1331 (1690)
Q Consensus 1253 AL~smA~dYY~~~~ndEsla~~~n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d~eL~L-~AayL~~k~m~e 1331 (1690)
..... ++|-.. . ....-+.+...||+| -|--=.+.+. ++.+|...+...
T Consensus 299 nw~~y-Ldf~i~-~-----------g~~~~~~~l~ercli-----------------~cA~Y~efWiky~~~m~~~~~~~ 348 (577)
T KOG1258|consen 299 NWRYY-LDFEIT-L-----------GDFSRVFILFERCLI-----------------PCALYDEFWIKYARWMESSGDVS 348 (577)
T ss_pred HHHHH-hhhhhh-c-----------ccHHHHHHHHHHHHh-----------------HHhhhHHHHHHHHHHHHHcCchh
Confidence 55544 244332 1 122333344455555 3322233433 333455554333
Q ss_pred ccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHH------------HHHHHhhhcccccccchhhccc
Q 000307 1332 LSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR------------WFHSVWKVQYSQVEISDPLVAD 1399 (1690)
Q Consensus 1332 ~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~------------ff~gia~~Q~~~deALD~lr~g 1399 (1690)
-+-.++..+..+.-+-.++++ .++...-=..|+++.|+.++++ .+.-.+.+.+..-+........
T Consensus 349 ~~~~~~~~~~~i~~k~~~~i~---L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l 425 (577)
T KOG1258|consen 349 LANNVLARACKIHVKKTPIIH---LLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNEL 425 (577)
T ss_pred HHHHHHHhhhhhcCCCCcHHH---HHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHH
Confidence 444677777777766666433 3334444456788888888877 2222222222111111101111
Q ss_pred CCCCCCCCCCCCCcccccccccchhhhhHHHHH-HHHHhhhcChHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCC
Q 000307 1400 MSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNL-SLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINES 1477 (1690)
Q Consensus 1400 ~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD-~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLSle~~ 1477 (1690)
.+.+.......-...++ ++.. =|.....++.++|+.+.-.|+...|++ .+.+-.|.-|......
T Consensus 426 ~s~~~~~~~~~~i~~~l------------~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~--k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 426 YSSIYEGKENNGILEKL------------YVKFARLRYKIREDADLARIILLEANDILPDC--KVLYLELIRFELIQPS 490 (577)
T ss_pred HHHhcccccCcchhHHH------------HHHHHHHHHHHhcCHHHHHHHHHHhhhcCCcc--HHHHHHHHHHHHhCCc
Confidence 11111111111111212 2222 123345889999999999999999999 9999999988887653
No 140
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.36 E-value=0.026 Score=65.49 Aligned_cols=225 Identities=15% Similarity=0.070 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCC
Q 000307 1123 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISD 1202 (1690)
Q Consensus 1123 aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sD 1202 (1690)
.|..+|..+. .....+... ++...++...|...|.++.+|.-| . ++.++.-..+.-+..|+...+
T Consensus 16 ~Y~~~i~e~~-~~~~~~~~~-------~e~~~~~~Rs~iAlg~~~~vl~ei---~----~~~~~~l~av~~la~y~~~~~ 80 (290)
T PF04733_consen 16 NYQQCINEAS-LKSFSPENK-------LERDFYQYRSYIALGQYDSVLSEI---K----KSSSPELQAVRLLAEYLSSPS 80 (290)
T ss_dssp -HHHHCHHHH-CHTSTCHHH-------HHHHHHHHHHHHHTT-HHHHHHHS--------TTSSCCCHHHHHHHHHHCTST
T ss_pred hHHHHHHHhh-ccCCCchhH-------HHHHHHHHHHHHHcCChhHHHHHh---c----cCCChhHHHHHHHHHHHhCcc
Confidence 7899997665 333332234 778888888999999999887622 2 222432334455667777633
Q ss_pred -ccch------hHHHHH---HHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchh
Q 000307 1203 -KLIF------WVCCVY---LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLE 1272 (1690)
Q Consensus 1203 -kc~A------wLc~iY---dl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla 1272 (1690)
+..+ |+...+ ...++++-+-+|...|...+|+.+ +.+.-.-|. +.+++..|=. .|.-+++
T Consensus 81 ~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~---l~~~~~lE~------~al~Vqi~L~-~~R~dlA 150 (290)
T PF04733_consen 81 DKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKL---LHKGGSLEL------LALAVQILLK-MNRPDLA 150 (290)
T ss_dssp THHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCC---CTTTTCHHH------HHHHHHHHHH-TT-HHHH
T ss_pred chHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHH---HHccCcccH------HHHHHHHHHH-cCCHHHH
Confidence 2222 444443 345788888999999999999998 666522222 2222332322 4555555
Q ss_pred hhh---cccchhHHHH-HHHHHHH----HhcchHHHHHHHHHHHHhCCCcchh--HHHHHHHhhccCCCccHHHHHHHHH
Q 000307 1273 KET---NLRSAHCFAV-NHIWCMA----VLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALI 1342 (1690)
Q Consensus 1273 ~~~---n~k~d~~tKL-N~IRq~I----~lEdse~al~LfdklLe~~P~d~eL--~L~AayL~~k~m~e~Ai~vfe~aL~ 1342 (1690)
... -.+.+.+--+ ++.--.+ .-|....|.-.|+.+-+.+|..+.+ .+..++|++.+ -++|...++++|+
T Consensus 151 ~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~-~~eAe~~L~~al~ 229 (290)
T PF04733_consen 151 EKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGH-YEEAEELLEEALE 229 (290)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT--HHHHHHHHHHHCC
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHH
Confidence 544 1222222222 2222222 2345788999999999998888877 67778888888 8888999999999
Q ss_pred hCCCCCchhHHHHHHHHHHHHhcCCh-hHHHHHHHH
Q 000307 1343 KWPKGVPGIQCIWNQYVEYALQNGRH-DFAAELMDR 1377 (1690)
Q Consensus 1343 ~~PkNa~g~qcaW~QLiq~Al~~e~~-d~ai~L~~~ 1377 (1690)
.+|++.. +..-+|-..+..|+. +.+-+...+
T Consensus 230 ~~~~~~d----~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 230 KDPNDPD----TLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp C-CCHHH----HHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hccCCHH----HHHHHHHHHHHhCCChhHHHHHHHH
Confidence 9999877 555566666666666 444444433
No 141
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.35 E-value=0.8 Score=59.44 Aligned_cols=319 Identities=11% Similarity=-0.011 Sum_probs=167.6
Q ss_pred hhHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH---------HHHHHH
Q 000307 1050 EGMKKALSLLSRALEADPT---------SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---------LWLMYI 1111 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPt---------SAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~---------Lw~mYI 1111 (1690)
++++.|..++.++++.-+. ..++...++.++...+...++..+++.|.+..|.... ++.+|.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 5678888888888765332 2344555677888899999999999999986554432 455666
Q ss_pred hcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccH
Q 000307 1112 NSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFL 1191 (1690)
Q Consensus 1112 Nsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSL 1191 (1690)
..+ .|++|+..|++..... ... .......-.+..+..++..+|+++.|+..+.+....+.
T Consensus 503 ~~G--------~~~~A~~~~~~al~~~-~~~-g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~---------- 562 (903)
T PRK04841 503 CKG--------ELARALAMMQQTEQMA-RQH-DVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIE---------- 562 (903)
T ss_pred HcC--------CHHHHHHHHHHHHHHH-hhh-cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH----------
Confidence 677 7777877776655433 111 11122344677888999999999999997655443110
Q ss_pred HHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcch
Q 000307 1192 SDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESL 1271 (1690)
Q Consensus 1192 sKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsl 1271 (1690)
..+..........+ .+.+.++...|...+|... +..|...+.. .+.
T Consensus 563 -------~~~~~~~~~~~~~~-----~~la~~~~~~G~~~~A~~~------------------~~~al~~~~~-~~~--- 608 (903)
T PRK04841 563 -------EQHLEQLPMHEFLL-----RIRAQLLWEWARLDEAEQC------------------ARKGLEVLSN-YQP--- 608 (903)
T ss_pred -------HhccccccHHHHHH-----HHHHHHHHHhcCHHHHHHH------------------HHHhHHhhhc-cCc---
Confidence 01111111011111 1235555555655555443 2332222221 110
Q ss_pred hhhhcccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCc---chh-----HHHHHHHhhccCCCccHHHHHHHHHh
Q 000307 1272 EKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSC---LEL-----VLMKARLQKHDFGDLSSVGFEEALIK 1343 (1690)
Q Consensus 1272 a~~~n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d---~eL-----~L~AayL~~k~m~e~Ai~vfe~aL~~ 1343 (1690)
......-..+-+......+.+.+...+++++...+.- ... .+...++...+-.+.+...+......
T Consensus 609 ------~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~ 682 (903)
T PRK04841 609 ------QQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP 682 (903)
T ss_pred ------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC
Confidence 0000000111111122446777777777776653321 111 11223333333233333444443332
Q ss_pred CCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcccccccchhhcccCCCCCCCCCCCCCcccccccccch
Q 000307 1344 WPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQM 1423 (1690)
Q Consensus 1344 ~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~ 1423 (1690)
.+.......-++..+....+..+++++|..++++ +++......... ...-.+
T Consensus 683 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~--------------al~~~~~~g~~~-------~~a~~~------- 734 (903)
T PRK04841 683 EFANNHFLQGQWRNIARAQILLGQFDEAEIILEE--------------LNENARSLRLMS-------DLNRNL------- 734 (903)
T ss_pred CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHH--------------HHHHHHHhCchH-------HHHHHH-------
Confidence 2111110111244556666777888888887755 222221100000 000112
Q ss_pred hhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhccCCcHH
Q 000307 1424 DVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFK 1462 (1690)
Q Consensus 1424 d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i 1462 (1690)
..++.+|+. .|+.++|..++.+||.......+.
T Consensus 735 ----~~la~a~~~--~G~~~~A~~~L~~Al~la~~~g~~ 767 (903)
T PRK04841 735 ----ILLNQLYWQ--QGRKSEAQRVLLEALKLANRTGFI 767 (903)
T ss_pred ----HHHHHHHHH--cCCHHHHHHHHHHHHHHhCccchh
Confidence 456778888 999999999999999988876554
No 142
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.34 E-value=0.0063 Score=51.45 Aligned_cols=42 Identities=24% Similarity=0.246 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000307 1032 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLL 1078 (1690)
Q Consensus 1032 qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~ 1078 (1690)
++|+.||..+... |+++.|..+|.++|+.+|+++++|+.|+.
T Consensus 2 ~~~~~la~~~~~~-----G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRL-----GQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3566677666665 67777777777777777777777777764
No 143
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.32 E-value=0.027 Score=58.95 Aligned_cols=107 Identities=11% Similarity=0.038 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH-------HHHHHHhcCCCcccchH
Q 000307 1052 MKKALSLLSRALEADPTS--EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-------LWLMYINSRTPLNHRLD 1122 (1690)
Q Consensus 1052 yDAALdLLsrALEINPtS--AeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~-------Lw~mYINsr~s~ddrl~ 1122 (1690)
|..+.+.|..-+..++.. +.+|+.++.++..++..+++...|++|+++.|+... ++.+|...+
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g-------- 86 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG-------- 86 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC--------
Confidence 344455555544555555 778899999999999999999999999999876432 778889999
Q ss_pred HHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHh-------hhcCHHHHHHHHH
Q 000307 1123 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFC-------MSGNTEKAIQRIS 1174 (1690)
Q Consensus 1123 aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~-------qSGnydKAI~tL~ 1174 (1690)
.+++|+.+|+...+.. ++. .+.+..+..+|. ..|+++.|+..++
T Consensus 87 ~~~eA~~~~~~Al~~~-~~~-------~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 87 EHTKALEYYFQALERN-PFL-------PQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred CHHHHHHHHHHHHHhC-cCc-------HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 9999999998877766 766 455666666666 8888876655443
No 144
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=0.048 Score=65.00 Aligned_cols=129 Identities=15% Similarity=0.098 Sum_probs=89.6
Q ss_pred hhhhchh-hhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCC
Q 000307 1023 KLKQVEL-SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNE 1101 (1690)
Q Consensus 1023 ~Le~~~~-d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP 1101 (1690)
+++.-.. +.++||...+.+| |+|..|++++.-+.+-+--.+++|..++-.+...+...+|...-++|.+.-=
T Consensus 50 ~~~~EEE~~~~lWia~C~fhL-------gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL 122 (557)
T KOG3785|consen 50 NLDREEEDSLQLWIAHCYFHL-------GDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPL 122 (557)
T ss_pred ccchhhhHHHHHHHHHHHHhh-------ccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChH
Confidence 4444443 5699999998887 7899999999999998888999999999888888888888766666543221
Q ss_pred CCHHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1102 GSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1102 ~NY~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
.+--|..+-...+ +-.+-+++-+.+ .|- +|=-|.|+-..-|.--|+.||.++.|+++
T Consensus 123 ~~RLlfhlahkln--------dEk~~~~fh~~L-----qD~-------~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 123 CIRLLFHLAHKLN--------DEKRILTFHSSL-----QDT-------LEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHHHHHHHhC--------cHHHHHHHHHHH-----hhh-------HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111333333333 444444444444 233 45556777777788889999999999997
No 145
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.29 E-value=0.16 Score=68.38 Aligned_cols=229 Identities=17% Similarity=0.210 Sum_probs=148.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhc-CCCCcchhhhhhHHHHHHHHHHHhhhcCHHH
Q 000307 1090 DDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASA-SDGDEMHASACILDLFLQMLQCFCMSGNTEK 1168 (1690)
Q Consensus 1090 ~emfekAVelaP~NY~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~-~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydK 1168 (1690)
.+-|++-|.-+|++--+|--|+..-..+.+ .++|-...|+.-.. +-.+ ..--|-+-..++.|..+-|.-+.
T Consensus 1444 aeDferlvrssPNSSi~WI~YMaf~LelsE----iekAR~iaerAL~tIN~RE----eeEKLNiWiA~lNlEn~yG~ees 1515 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHLELSE----IEKARKIAERALKTINFRE----EEEKLNIWIAYLNLENAYGTEES 1515 (1710)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhhhh----hHHHHHHHHHHhhhCCcch----hHHHHHHHHHHHhHHHhhCcHHH
Confidence 467999999999999999999886644443 34444444333221 1011 11226666777777777775555
Q ss_pred HHHHHHhhcccccCCCCcccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhh
Q 000307 1169 AIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEK 1248 (1690)
Q Consensus 1169 AI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEP 1248 (1690)
...++.|.-+ -.+ ...+|+ . +..+|.-.++.++|-.+ +.
T Consensus 1516 l~kVFeRAcq-----ycd------~~~V~~-------------------~-L~~iy~k~ek~~~A~el---l~------- 1554 (1710)
T KOG1070|consen 1516 LKKVFERACQ-----YCD------AYTVHL-------------------K-LLGIYEKSEKNDEADEL---LR------- 1554 (1710)
T ss_pred HHHHHHHHHH-----hcc------hHHHHH-------------------H-HHHHHHHhhcchhHHHH---HH-------
Confidence 5454444443 111 122222 2 23467777777777665 11
Q ss_pred hhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHHH--HHHHHHHHhcchHHHHHHHHHHHHhCCC--cchh-HHHHHH
Q 000307 1249 QRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAV--NHIWCMAVLNGLECSMNLLEKYIKLYPS--CLEL-VLMKAR 1323 (1690)
Q Consensus 1249 dnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tKL--N~IRq~I~lEdse~al~LfdklLe~~P~--d~eL-~L~Aay 1323 (1690)
.| ... .+ +..++ ..+-+++..++-++|..|+.++|+.-|. .+++ .-.|..
T Consensus 1555 -------~m----~KK-F~-------------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1555 -------LM----LKK-FG-------------QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred -------HH----HHH-hc-------------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 11 111 11 22222 2222222344678999999999999999 6666 666666
Q ss_pred HhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHH-------------HHHHHhhhcc--c
Q 000307 1324 LQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR-------------WFHSVWKVQY--S 1388 (1690)
Q Consensus 1324 L~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~-------------ff~gia~~Q~--~ 1388 (1690)
+-+.+-++-+...||..|.-.||..- +|+=||..-+..++.+.+..|.+| ||.-+-.|-+ .
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtD----lW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~G 1685 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTD----LWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHG 1685 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchh----HHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcC
Confidence 77777778888999999999999999 999999999999999999999999 6666666655 3
Q ss_pred ccccchhh
Q 000307 1389 QVEISDPL 1396 (1690)
Q Consensus 1389 ~deALD~l 1396 (1690)
.+++++..
T Consensus 1686 de~~vE~V 1693 (1710)
T KOG1070|consen 1686 DEKNVEYV 1693 (1710)
T ss_pred chhhHHHH
Confidence 55555443
No 146
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.17 E-value=0.056 Score=61.72 Aligned_cols=154 Identities=17% Similarity=0.184 Sum_probs=108.9
Q ss_pred hHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHhC-CCCchHHHHHHHHHhcCC--CCHH--------HHHHHHhc
Q 000307 1051 GMKKALSLLSRALEAD------PTSEILWITYLLIFYSN-TNSVGKDDMFSYSVKHNE--GSYA--------LWLMYINS 1113 (1690)
Q Consensus 1051 ~yDAALdLLsrALEIN------PtSAeaWyeyl~lY~~~-~~~~ea~emfekAVelaP--~NY~--------Lw~mYINs 1113 (1690)
+++.|...|.+|+++- ..++.++..++.+|-.. +..+.|.++|++|+++-. +... ++.+|+..
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 5667777777777762 23688999999999998 899999999999999832 2222 88889999
Q ss_pred CCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc--cccCCCCcccccH
Q 000307 1114 RTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI--PATGSNDRHSLFL 1191 (1690)
Q Consensus 1114 r~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq--~Al~G~sE~~lSL 1191 (1690)
+ .|++|++.|++.+... -+..-.-..+=+.++..+=|+...|++-.|-..+++... +.-.+..| .-.+
T Consensus 169 ~--------~y~~A~~~~e~~~~~~-l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E-~~~~ 238 (282)
T PF14938_consen 169 G--------RYEEAIEIYEEVAKKC-LENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSRE-YKFL 238 (282)
T ss_dssp T---------HHHHHHHHHHHHHTC-CCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHH-HHHH
T ss_pred C--------CHHHHHHHHHHHHHHh-hcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH-HHHH
Confidence 8 9999999999988764 221112335668888888899999999889888888775 12234445 4566
Q ss_pred HHHHHHhccCCccch-hHHHHHHH
Q 000307 1192 SDILTCLTISDKLIF-WVCCVYLV 1214 (1690)
Q Consensus 1192 sKi~~YLt~sDkc~A-wLc~iYdl 1214 (1690)
..+......+|-..+ ..+..|+.
T Consensus 239 ~~l~~A~~~~D~e~f~~av~~~d~ 262 (282)
T PF14938_consen 239 EDLLEAYEEGDVEAFTEAVAEYDS 262 (282)
T ss_dssp HHHHHHHHTT-CCCHHHHCHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcc
Confidence 777777777777776 56666643
No 147
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.14 E-value=0.054 Score=59.18 Aligned_cols=142 Identities=15% Similarity=0.154 Sum_probs=103.7
Q ss_pred hHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH--
Q 000307 1031 NEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPT---SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-- 1105 (1690)
Q Consensus 1031 ~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPt---SAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~-- 1105 (1690)
.+.+-..|...+.. |+|+.|..+|...+...|+ ++.+++.++..|+..+.-..|...|+.-++..|.+-.
T Consensus 5 ~~~lY~~a~~~~~~-----g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~ 79 (203)
T PF13525_consen 5 AEALYQKALEALQQ-----GDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD 79 (203)
T ss_dssp HHHHHHHHHHHHHC-----T-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH
T ss_pred HHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence 45666777777777 8999999999999999887 6789999999999999999999999999999998765
Q ss_pred -----HHHHHHhcCCCc---ccchHHHHHHHHHHHHhhhcCCCCcchhhh----------hhHHHHHHHHHHHhhhcCHH
Q 000307 1106 -----LWLMYINSRTPL---NHRLDAYDAALSVLCRCASASDGDEMHASA----------CILDLFLQMLQCFCMSGNTE 1167 (1690)
Q Consensus 1106 -----Lw~mYINsr~s~---ddrl~aYdrAI~aLe~las~~~pDr~~~Sa----------~ILDvLL~LvqLY~qSGnyd 1167 (1690)
++..|.++...+ +-......+|+..|..+...+ |+-....- .|-+--+..+.+|...|+|.
T Consensus 80 ~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-P~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~ 158 (203)
T PF13525_consen 80 YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-PNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYK 158 (203)
T ss_dssp HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH--TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HH
T ss_pred hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 444444433222 333346678999999999999 76433321 33344467789999999999
Q ss_pred HHHHHHHhhcc
Q 000307 1168 KAIQRISRLLI 1178 (1690)
Q Consensus 1168 KAI~tL~rLEq 1178 (1690)
.||.+++.+..
T Consensus 159 aA~~r~~~v~~ 169 (203)
T PF13525_consen 159 AAIIRFQYVIE 169 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998886
No 148
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.13 E-value=0.021 Score=50.64 Aligned_cols=59 Identities=19% Similarity=0.266 Sum_probs=49.2
Q ss_pred HHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1104 YALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1104 Y~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
|.++..|+..+ .|++|+..|++..+.+ |+. .++++.+..+|.++|++++|+..+.++..
T Consensus 1 ~~~a~~~~~~g--------~~~~A~~~~~~~l~~~-P~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 1 YALARALYQQG--------DYDEAIAAFEQALKQD-PDN-------PEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHHHCT--------HHHHHHHHHHHHHCCS-TTH-------HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ChHHHHHHHcC--------CHHHHHHHHHHHHHHC-CCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45778888888 9999999998888888 888 88999999999999999999988777653
No 149
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.99 E-value=0.17 Score=57.41 Aligned_cols=129 Identities=13% Similarity=0.067 Sum_probs=99.6
Q ss_pred HHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCC---------------C---CchHH
Q 000307 1032 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS---EILWITYLLIFYSNT---------------N---SVGKD 1090 (1690)
Q Consensus 1032 qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtS---AeaWyeyl~lY~~~~---------------~---~~ea~ 1090 (1690)
++.+.+|.-++.. ++|+.|...+.+.++.+|++ +.++|.++..+...+ . -..+.
T Consensus 70 ~a~l~la~ayy~~-----~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~ 144 (243)
T PRK10866 70 QVQLDLIYAYYKN-----ADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAF 144 (243)
T ss_pred HHHHHHHHHHHhc-----CCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHH
Confidence 4444555555554 56999999999999999986 456777776543332 1 12456
Q ss_pred HHHHHHHhcCCCCHH---------------------HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhh
Q 000307 1091 DMFSYSVKHNEGSYA---------------------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACI 1149 (1690)
Q Consensus 1091 emfekAVelaP~NY~---------------------Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~I 1149 (1690)
..|+.-|+.-|++-. ++-+|.+.+ .|..||.-+..+...+ |+- ...
T Consensus 145 ~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~--------~y~AA~~r~~~v~~~Y-p~t----~~~ 211 (243)
T PRK10866 145 RDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRG--------AYVAVVNRVEQMLRDY-PDT----QAT 211 (243)
T ss_pred HHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------chHHHHHHHHHHHHHC-CCC----chH
Confidence 889999999998865 677788888 8999999999999988 653 346
Q ss_pred HHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1150 LDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1150 LDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
.|.|..|+.-|...|..+.|-.++..|..
T Consensus 212 ~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 212 RDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 99999999999999999999887776654
No 150
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.84 E-value=0.067 Score=61.64 Aligned_cols=108 Identities=11% Similarity=0.070 Sum_probs=90.3
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHHH
Q 000307 1050 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1125 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYd 1125 (1690)
|+|..|..+|.++.+++|+++++|.-++-.|.+.+...+|+.-|.+|.++.|.+-. |+-.|+=.+ .++
T Consensus 114 g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~g--------d~~ 185 (257)
T COG5010 114 GNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRG--------DLE 185 (257)
T ss_pred cchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcC--------CHH
Confidence 88999999999999999999999999999999999999999999999999988776 664444445 599
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHH
Q 000307 1126 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRI 1173 (1690)
Q Consensus 1126 rAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL 1173 (1690)
+|...+...+..- +.. .=+..-|+-+...+|+.+.|-.++
T Consensus 186 ~A~~lll~a~l~~-~ad-------~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 186 DAETLLLPAYLSP-AAD-------SRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HHHHHHHHHHhCC-CCc-------hHHHHHHHHHHhhcCChHHHHhhc
Confidence 9999997777665 333 346667777888899998886644
No 151
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.74 E-value=0.008 Score=49.14 Aligned_cols=33 Identities=9% Similarity=0.160 Sum_probs=29.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHH
Q 000307 1058 LLSRALEADPTSEILWITYLLIFYSNTNSVGKD 1090 (1690)
Q Consensus 1058 LLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~ 1090 (1690)
+|.+|||+||+++++|+.|+.+|...+..++|.
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378999999999999999999999998877664
No 152
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.73 E-value=0.11 Score=56.90 Aligned_cols=127 Identities=14% Similarity=0.164 Sum_probs=98.7
Q ss_pred hhchhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhCCCCc-----------hHH
Q 000307 1025 KQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSE---ILWITYLLIFYSNTNSV-----------GKD 1090 (1690)
Q Consensus 1025 e~~~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSA---eaWyeyl~lY~~~~~~~-----------ea~ 1090 (1690)
-.++.-.++++.+|.-++.. |+|+.|...+.+-++..|+++ .++|..+..++.+.... .|.
T Consensus 36 P~s~~a~~A~l~la~a~y~~-----~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~ 110 (203)
T PF13525_consen 36 PNSPYAPQAQLMLAYAYYKQ-----GDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAI 110 (203)
T ss_dssp TTSTTHHHHHHHHHHHHHHT-----T-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHH
Confidence 33444457777777777665 789999999999999999965 58888888877664333 678
Q ss_pred HHHHHHHhcCCCCHH---------------------HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhh
Q 000307 1091 DMFSYSVKHNEGSYA---------------------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACI 1149 (1690)
Q Consensus 1091 emfekAVelaP~NY~---------------------Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~I 1149 (1690)
..|+.-++.-|++-. ++.+|.+.+ .|..|+.-+..+...+ |+- -..
T Consensus 111 ~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~--------~y~aA~~r~~~v~~~y-p~t----~~~ 177 (203)
T PF13525_consen 111 EEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRG--------KYKAAIIRFQYVIENY-PDT----PAA 177 (203)
T ss_dssp HHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT---------HHHHHHHHHHHHHHS-TTS----HHH
T ss_pred HHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--------cHHHHHHHHHHHHHHC-CCC----chH
Confidence 899999999999865 788899999 9999999999999999 663 456
Q ss_pred HHHHHHHHHHHhhhcCHHHH
Q 000307 1150 LDLFLQMLQCFCMSGNTEKA 1169 (1690)
Q Consensus 1150 LDvLL~LvqLY~qSGnydKA 1169 (1690)
-|.+..|+..|..-|..+.|
T Consensus 178 ~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 178 EEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHhCChHHH
Confidence 89999999999999998844
No 153
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.73 E-value=0.15 Score=59.02 Aligned_cols=138 Identities=20% Similarity=0.221 Sum_probs=105.2
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 000307 1300 SMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWF 1379 (1690)
Q Consensus 1300 al~LfdklLe~~P~d~eL~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ff 1379 (1690)
+..-+-......|.|.+++.++.-+.+-+-.+.+..+..+++...|+... .=.-++..++..+++..|+...++
T Consensus 52 a~~al~~~~~~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~----ll~~~gk~~~~~g~~~~A~~~~rk-- 125 (257)
T COG5010 52 AAAALGAAVLRNPEDLSIAKLATALYLRGDADSSLAVLQKSAIAYPKDRE----LLAAQGKNQIRNGNFGEAVSVLRK-- 125 (257)
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHhcccccchHHHHhhhhccCcccHH----HHHHHHHHHHHhcchHHHHHHHHH--
Confidence 45556677788999999944444455555488888998999999999876 333478888999999888887754
Q ss_pred HHHhhhcccccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhccCC
Q 000307 1380 HSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1459 (1690)
Q Consensus 1380 ~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N 1459 (1690)
....-+. ...++ ..+|-+|-+ .|+.++|..+|-+||+..|.+
T Consensus 126 -------------------A~~l~p~------d~~~~-----------~~lgaaldq--~Gr~~~Ar~ay~qAl~L~~~~ 167 (257)
T COG5010 126 -------------------AARLAPT------DWEAW-----------NLLGAALDQ--LGRFDEARRAYRQALELAPNE 167 (257)
T ss_pred -------------------HhccCCC------Chhhh-----------hHHHHHHHH--ccChhHHHHHHHHHHHhccCC
Confidence 2222222 24667 678889999 999999999999999999998
Q ss_pred cHHHHHHHHHHHHhcCCCCCCcccc
Q 000307 1460 HFKHCVREHAMLLLINESEPKEGAP 1484 (1690)
Q Consensus 1460 ~~i~cLNNYAYFLSle~~dL~KAEq 1484 (1690)
-..+||.+|-+.+++. +.+|+.
T Consensus 168 --p~~~nNlgms~~L~gd-~~~A~~ 189 (257)
T COG5010 168 --PSIANNLGMSLLLRGD-LEDAET 189 (257)
T ss_pred --chhhhhHHHHHHHcCC-HHHHHH
Confidence 8899999999998873 444443
No 154
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=95.70 E-value=0.036 Score=70.45 Aligned_cols=195 Identities=16% Similarity=0.092 Sum_probs=150.7
Q ss_pred HHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccchhHHHHH------HHhhccccHHHHhh
Q 000307 1153 FLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY------LVIYRKLPDAVLQL 1226 (1690)
Q Consensus 1153 LL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iY------dl~YrvLPGd~y~q 1226 (1690)
=..++.+|..-|=+..|+....||+- -.+ .|.=|+..|+..+|-+...= +.+--.++||+..+
T Consensus 401 q~~laell~slGitksAl~I~Erlem-----w~~------vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLEM-----WDP------VILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHHH-----HHH------HHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccC
Confidence 34578889999999999999999885 223 67888889988888443332 44556788999999
Q ss_pred ccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHHHHHHH---------HHHHhcch
Q 000307 1227 LECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIW---------CMAVLNGL 1297 (1690)
Q Consensus 1227 ne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tKLN~IR---------q~I~lEds 1297 (1690)
..+...|+.+ .+.-++-|.++.|--.|+. .. +++..+.....+++|.+. +.+.+++.
T Consensus 470 ~s~yEkawEl---------sn~~sarA~r~~~~~~~~~----~~-fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 470 PSLYEKAWEL---------SNYISARAQRSLALLILSN----KD-FSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hHHHHHHHHH---------hhhhhHHHHHhhccccccc----hh-HHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh
Confidence 9999999998 4555666777665334431 11 111123444455554432 22237799
Q ss_pred HHHHHHHHHHHHhCCCcchh--HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHH
Q 000307 1298 ECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELM 1375 (1690)
Q Consensus 1298 e~al~LfdklLe~~P~d~eL--~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~ 1375 (1690)
+.++.-|.+.+.+.|...+- -|-++||.+++ ...|+..+.+||+-+=++-. +|.-|.--++.-+.++.|++.+
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~-k~ra~~~l~EAlKcn~~~w~----iWENymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKK-KKRAFRKLKEALKCNYQHWQ----IWENYMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhh-hHHHHHHHHHHhhcCCCCCe----eeechhhhhhhcccHHHHHHHH
Confidence 99999999999999999999 99999999999 88999999999999999999 9999999999999999999998
Q ss_pred HH
Q 000307 1376 DR 1377 (1690)
Q Consensus 1376 ~~ 1377 (1690)
.+
T Consensus 611 ~r 612 (777)
T KOG1128|consen 611 HR 612 (777)
T ss_pred HH
Confidence 76
No 155
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.69 E-value=0.029 Score=49.79 Aligned_cols=48 Identities=27% Similarity=0.456 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1123 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1123 aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
.|++|+..|++....+ |+. .++.+.|+++|..+|++++|...+.++..
T Consensus 6 ~~~~A~~~~~~~l~~~-p~~-------~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 6 DYDEAIELLEKALQRN-PDN-------PEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHHHHHHHHHHHHHHT-TTS-------HHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred CHHHHHHHHHHHHHHC-CCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8999999999999998 888 99999999999999999999999999886
No 156
>PRK15331 chaperone protein SicA; Provisional
Probab=95.54 E-value=0.046 Score=59.52 Aligned_cols=102 Identities=11% Similarity=0.021 Sum_probs=83.4
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHHHHHHHHHHHh
Q 000307 1059 LSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRC 1134 (1690)
Q Consensus 1059 LsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYdrAI~aLe~l 1134 (1690)
|.-...|.++.=+..|-++--||+.++-.+|..+|.-.+-++|.|+. |+..|.-++ .|++||.+|.-.
T Consensus 26 lk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k--------~y~~Ai~~Y~~A 97 (165)
T PRK15331 26 LKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKK--------QFQKACDLYAVA 97 (165)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHH--------HHHHHHHHHHHH
Confidence 44556677777788899999999999999999999999999998877 889999999 999999999554
Q ss_pred hhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhh
Q 000307 1135 ASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRL 1176 (1690)
Q Consensus 1135 as~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rL 1176 (1690)
+.-. ++. --+.+++.+||.+.|+..+|+..+.-.
T Consensus 98 ~~l~-~~d-------p~p~f~agqC~l~l~~~~~A~~~f~~a 131 (165)
T PRK15331 98 FTLL-KND-------YRPVFFTGQCQLLMRKAAKARQCFELV 131 (165)
T ss_pred HHcc-cCC-------CCccchHHHHHHHhCCHHHHHHHHHHH
Confidence 4433 332 235899999999999999999855433
No 157
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.39 E-value=3.3 Score=53.23 Aligned_cols=361 Identities=14% Similarity=0.134 Sum_probs=176.3
Q ss_pred HHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHHHHHHhcC----CCcccchHHHHHHHHHHHHhhh-c
Q 000307 1063 LEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSR----TPLNHRLDAYDAALSVLCRCAS-A 1137 (1690)
Q Consensus 1063 LEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw~mYINsr----~s~ddrl~aYdrAI~aLe~las-~ 1137 (1690)
|--||.+.-.|--|..+.-+ ......--.||+|.+.=|.+|.||.-||..| ..+.--+-+|+.--..||+... -
T Consensus 20 ilRnp~svk~W~RYIe~k~~-sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~m 98 (835)
T KOG2047|consen 20 ILRNPFSVKCWLRYIEHKAG-SPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFM 98 (835)
T ss_pred HHcCchhHHHHHHHHHHHcc-CChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHH
Confidence 34477888888888777444 3334445678888888888888888888654 2223333445444444444322 1
Q ss_pred CCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCC-----------------CCcccccHHHHHHHhcc
Q 000307 1138 SDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGS-----------------NDRHSLFLSDILTCLTI 1200 (1690)
Q Consensus 1138 ~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G-----------------~sE~~lSLsKi~~YLt~ 1200 (1690)
++-++ +-+.-+|++..+|++-.--.+++|-+- |+.= .-| ..++--.+-||++
T Consensus 99 HkmpR---------Iwl~Ylq~l~~Q~~iT~tR~tfdrALr-aLpvtqH~rIW~lyl~Fv~~~~lP-ets~rvyrRYLk~ 167 (835)
T KOG2047|consen 99 HKMPR---------IWLDYLQFLIKQGLITRTRRTFDRALR-ALPVTQHDRIWDLYLKFVESHGLP-ETSIRVYRRYLKV 167 (835)
T ss_pred hcCCH---------HHHHHHHHHHhcchHHHHHHHHHHHHH-hCchHhhccchHHHHHHHHhCCCh-HHHHHHHHHHHhc
Confidence 22344 334445667777877776666666442 1110 011 1233333344444
Q ss_pred CCccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchh-------hhhhHHHHHHHHHHHHHhhcCCcchhh
Q 000307 1201 SDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDD-------EKQRAIKLIEMAVNSVELYSNGESLEK 1273 (1690)
Q Consensus 1201 sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkd-------EPdnalAL~smA~dYY~~~~ndEsla~ 1273 (1690)
.-+..- .| ++|-...+ ...||-.. +..++.. -|.+=.--.++ -++..+ .+.+..
T Consensus 168 ~P~~~e----ey-ie~L~~~d-------~~~eaa~~---la~vln~d~f~sk~gkSn~qlw~el-cdlis~---~p~~~~ 228 (835)
T KOG2047|consen 168 APEARE----EY-IEYLAKSD-------RLDEAAQR---LATVLNQDEFVSKKGKSNHQLWLEL-CDLISQ---NPDKVQ 228 (835)
T ss_pred CHHHHH----HH-HHHHHhcc-------chHHHHHH---HHHhcCchhhhhhcccchhhHHHHH-HHHHHh---Ccchhc
Confidence 333211 11 11111111 11111111 1111111 11111111111 122221 111111
Q ss_pred hh----------cccchhHHHH-HHHHHHH-HhcchHHHHHHHHHHHHhCCCcchh-HHHHHHHhhccCCCccHHHHHHH
Q 000307 1274 ET----------NLRSAHCFAV-NHIWCMA-VLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEA 1340 (1690)
Q Consensus 1274 ~~----------n~k~d~~tKL-N~IRq~I-~lEdse~al~LfdklLe~~P~d~eL-~L~AayL~~k~m~e~Ai~vfe~a 1340 (1690)
+. ..=+|+--+| +-+..|. ....++.|..++.+.|..--+--+. .++.+|.+--. .+-+. -.+.+
T Consensus 229 slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE-~~~~~-~me~a 306 (835)
T KOG2047|consen 229 SLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEE-SCVAA-KMELA 306 (835)
T ss_pred ccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHH-HHHHH-HHhhh
Confidence 10 2334555555 3344433 3457888888888888888777777 67777765443 11111 11101
Q ss_pred --HHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHH-------HHHHHhhhcccccccchhhcccCCCCCCCCCCCC
Q 000307 1341 --LIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR-------WFHSVWKVQYSQVEISDPLVADMSHSSPESTSTS 1411 (1690)
Q Consensus 1341 --L~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~-------ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~ 1411 (1690)
-..+++..--.+|.| +-.+.++.....-.=--++++ |..-+.-+.....+.+.++..++..+++......
T Consensus 307 ~~~~~n~ed~~dl~~~~-a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs 385 (835)
T KOG2047|consen 307 DEESGNEEDDVDLELHM-ARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGS 385 (835)
T ss_pred hhcccChhhhhhHHHHH-HHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCC
Confidence 111222222222222 222333322221111112222 4444444444455555555555555545444444
Q ss_pred CcccccccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhcc--CCcHHHHHHHHHH
Q 000307 1412 DPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAA--SEHFKHCVREHAM 1470 (1690)
Q Consensus 1412 vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np--~N~~i~cLNNYAY 1470 (1690)
..+.. .=+++.|.. .|+.+.|.+.||+|++-+= -+++..+|-++|-
T Consensus 386 ~~~Lw-----------~~faklYe~--~~~l~~aRvifeka~~V~y~~v~dLa~vw~~wae 433 (835)
T KOG2047|consen 386 PGTLW-----------VEFAKLYEN--NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAE 433 (835)
T ss_pred hhhHH-----------HHHHHHHHh--cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHH
Confidence 55544 567788999 9999999999999997554 4777889999983
No 158
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.25 E-value=3.7 Score=51.52 Aligned_cols=367 Identities=15% Similarity=0.068 Sum_probs=178.1
Q ss_pred HHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHhCC-CCchHHHHHHHHHhcCCCC-HH-------HHHHHHhcCC
Q 000307 1052 MKKALSLLSRALEAD---PTS----EILWITYLLIFYSNT-NSVGKDDMFSYSVKHNEGS-YA-------LWLMYINSRT 1115 (1690)
Q Consensus 1052 yDAALdLLsrALEIN---PtS----AeaWyeyl~lY~~~~-~~~ea~emfekAVelaP~N-Y~-------Lw~mYINsr~ 1115 (1690)
.+-|-+-|.+|+-|- |+. =.++..++++|.+.. .-..+..++++|++++-.+ || |+++.+-.+
T Consensus 63 ~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idk- 141 (629)
T KOG2300|consen 63 VELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDK- 141 (629)
T ss_pred HHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhc-
Confidence 444555555554443 222 234556677777766 5667789999999998443 44 777888788
Q ss_pred CcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHH--HHHHHHHHHhhhcC---HHHHHHHHHhhcccccCCCCccccc
Q 000307 1116 PLNHRLDAYDAALSVLCRCASASDGDEMHASACILD--LFLQMLQCFCMSGN---TEKAIQRISRLLIPATGSNDRHSLF 1190 (1690)
Q Consensus 1116 s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILD--vLL~LvqLY~qSGn---ydKAI~tL~rLEq~Al~G~sE~~lS 1190 (1690)
+|+-|+++|+--++.. .+.++--+- .++.+.+++.+..+ +.++++++..|++ ....++++
T Consensus 142 -------D~~sA~elLavga~sA----d~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~--n~~sdk~~-- 206 (629)
T KOG2300|consen 142 -------DFPSALELLAVGAESA----DHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQ--NISSDKTQ-- 206 (629)
T ss_pred -------cchhHHHHHhcccccc----chhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHh--ccCCChHH--
Confidence 9999999984444433 122332222 23456667777665 6778888888886 22333222
Q ss_pred HHHHH---------HHhccCCccchhHHHH--HHHhhccccHH------HHhhc-----c-chhhhhcCCCCCcccchhh
Q 000307 1191 LSDIL---------TCLTISDKLIFWVCCV--YLVIYRKLPDA------VLQLL-----E-CEKELFAIDWPPVQLEDDE 1247 (1690)
Q Consensus 1191 LsKi~---------~YLt~sDkc~AwLc~i--Ydl~YrvLPGd------~y~qn-----e-~~KEAf~I~W~yvqvlkdE 1247 (1690)
.+-++ -|+-.|.-+-+.=|-+ -+..--..+.+ |+..+ . .+||.+.. .+.+...-
T Consensus 207 ~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqica---LV~l~tv~ 283 (629)
T KOG2300|consen 207 KEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICA---LVYLVTVI 283 (629)
T ss_pred HHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHh---hhhhhHHh
Confidence 11111 1222222222211100 01111111111 11000 0 24444333 34444444
Q ss_pred hhhHHHHHHHHHHHHHhhcCCcchhhhh-cccchhHHHHHHHHHHHHhc----------chHH----HHHHHHHHHHhCC
Q 000307 1248 KQRAIKLIEMAVNSVELYSNGESLEKET-NLRSAHCFAVNHIWCMAVLN----------GLEC----SMNLLEKYIKLYP 1312 (1690)
Q Consensus 1248 PdnalAL~smA~dYY~~~~ndEsla~~~-n~k~d~~tKLN~IRq~I~lE----------dse~----al~LfdklLe~~P 1312 (1690)
-.+...+|..| ..|. ||-+.... .+..+-+-++=.|-++|.+| +.+. ++++++--+ .-|
T Consensus 284 hsm~~gy~~~~-~K~t----De~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~-r~p 357 (629)
T KOG2300|consen 284 HSMPAGYFKKA-QKYT----DEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCT-RFP 357 (629)
T ss_pred hhhhhHHHHHH-HHHH----HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-hCC
Confidence 45555555554 3343 23222221 22222122221122233322 3332 333333222 233
Q ss_pred C-------cchh-HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHH-------
Q 000307 1313 S-------CLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR------- 1377 (1690)
Q Consensus 1313 ~-------d~eL-~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~------- 1377 (1690)
. .++| +|.+.|=..-+.-+.|-..|..|.+.--+..--.-|--| ++-..+..++-+...++++.
T Consensus 358 ~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nln-lAi~YL~~~~~ed~y~~ld~i~p~nt~ 436 (629)
T KOG2300|consen 358 TPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLN-LAISYLRIGDAEDLYKALDLIGPLNTN 436 (629)
T ss_pred chHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHh-HHHHHHHhccHHHHHHHHHhcCCCCCC
Confidence 3 5677 888888544444667777777777654332221111111 12223334454444444444
Q ss_pred ------------HHHH-HhhhcccccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHH
Q 000307 1378 ------------WFHS-VWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNE 1444 (1690)
Q Consensus 1378 ------------ff~g-ia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~E 1444 (1690)
|..| +++.|.+.+||-..++++..-.+. .||+--.... .-+||.+.+. .|+..|
T Consensus 437 s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmana-------ed~~rL~a~~----LvLLs~v~ls--lgn~~e 503 (629)
T KOG2300|consen 437 SLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANA-------EDLNRLTACS----LVLLSHVFLS--LGNTVE 503 (629)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcch-------hhHHHHHHHH----HHHHHHHHHH--hcchHH
Confidence 3334 556666888888777766433333 2433000000 1445556666 788888
Q ss_pred HHHHHHHHHhhcc
Q 000307 1445 ARLAIDAALKAAA 1457 (1690)
Q Consensus 1445 Af~AYDkALk~np 1457 (1690)
+....-.|++|+-
T Consensus 504 s~nmvrpamqlAk 516 (629)
T KOG2300|consen 504 SRNMVRPAMQLAK 516 (629)
T ss_pred HHhccchHHHHHh
Confidence 8888888887775
No 159
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.11 E-value=0.33 Score=57.96 Aligned_cols=229 Identities=17% Similarity=0.114 Sum_probs=152.9
Q ss_pred HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCC
Q 000307 1106 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND 1185 (1690)
Q Consensus 1106 Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~s 1185 (1690)
++-.|+..+ .|-+|-..|-.-.+.+ . ..|.|+.|...|..-..-.-|+.+|..-.. .-
T Consensus 229 ~gkCylrLg--------m~r~AekqlqssL~q~--~-------~~dTfllLskvY~ridQP~~AL~~~~~gld-----~f 286 (478)
T KOG1129|consen 229 MGKCYLRLG--------MPRRAEKQLQSSLTQF--P-------HPDTFLLLSKVYQRIDQPERALLVIGEGLD-----SF 286 (478)
T ss_pred HHHHHHHhc--------ChhhhHHHHHHHhhcC--C-------chhHHHHHHHHHHHhccHHHHHHHHhhhhh-----cC
Confidence 666788888 8888888884444443 2 278999999988888887778776643321 11
Q ss_pred cccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhh
Q 000307 1186 RHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELY 1265 (1690)
Q Consensus 1186 E~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~ 1265 (1690)
| +++.|+.=-+-++.--|...+++.+ |..++|-+|.|+-++..-|+.||=
T Consensus 287 P-------------------------~~VT~l~g~ARi~eam~~~~~a~~l---Yk~vlk~~~~nvEaiAcia~~yfY-- 336 (478)
T KOG1129|consen 287 P-------------------------FDVTYLLGQARIHEAMEQQEDALQL---YKLVLKLHPINVEAIACIAVGYFY-- 336 (478)
T ss_pred C-------------------------chhhhhhhhHHHHHHHHhHHHHHHH---HHHHHhcCCccceeeeeeeecccc--
Confidence 1 1344444445555556677788888 888888888888888888777664
Q ss_pred cCCcchhhhhcccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCcchh----HHHHHHHhhccCCCccHHHHHHHH
Q 000307 1266 SNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL----VLMKARLQKHDFGDLSSVGFEEAL 1341 (1690)
Q Consensus 1266 ~ndEsla~~~n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d~eL----~L~AayL~~k~m~e~Ai~vfe~aL 1341 (1690)
.| ..|-|+..++++|++--...+| -|++.|-+.-+ -.+.-|+.||
T Consensus 337 ~~----------------------------~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D---~~L~sf~RAl 385 (478)
T KOG1129|consen 337 DN----------------------------NPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQID---LVLPSFQRAL 385 (478)
T ss_pred CC----------------------------ChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchh---hhHHHHHHHH
Confidence 23 2334455677777777777777 77887776666 5667788888
Q ss_pred HhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcccccccchhhcccCCCCCCCCCCCCCccccccccc
Q 000307 1342 IKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRN 1421 (1690)
Q Consensus 1342 ~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~ 1421 (1690)
+..-+..+ ..=+|+-|-..++.-|++..|.+-.+- ++ ++| +.+
T Consensus 386 stat~~~~-aaDvWYNlg~vaV~iGD~nlA~rcfrl-----------------aL---------------~~d----~~h 428 (478)
T KOG1129|consen 386 STATQPGQ-AADVWYNLGFVAVTIGDFNLAKRCFRL-----------------AL---------------TSD----AQH 428 (478)
T ss_pred hhccCcch-hhhhhhccceeEEeccchHHHHHHHHH-----------------Hh---------------ccC----cch
Confidence 87653332 224788888888888888877664422 00 111 001
Q ss_pred chhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhccC
Q 000307 1422 QMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAAS 1458 (1690)
Q Consensus 1422 Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~ 1458 (1690)
-. ++-|+..-.+=+|+..+|...|..|-..+|+
T Consensus 429 ~e----alnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 429 GE----ALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HH----HHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 11 4555533333399999999999999988885
No 160
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.04 E-value=0.035 Score=46.95 Aligned_cols=42 Identities=5% Similarity=0.170 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHHHHHH
Q 000307 1070 EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYI 1111 (1690)
Q Consensus 1070 AeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw~mYI 1111 (1690)
|++|+.|+..|...++..+|.++|+++++.+|+|-.+|..+-
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 579999999999999999999999999999999999887764
No 161
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.00 E-value=0.049 Score=66.86 Aligned_cols=65 Identities=15% Similarity=0.043 Sum_probs=56.8
Q ss_pred HhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCC-------HHHHHHHHhcCCCcccchHHHHHHHHHHHHhhh
Q 000307 1064 EADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS-------YALWLMYINSRTPLNHRLDAYDAALSVLCRCAS 1136 (1690)
Q Consensus 1064 EINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~N-------Y~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las 1136 (1690)
+.+|+.+++|+.++..|+.++..++|.++|++|++++|++ |.++..|..++ .+++|+..|.+..+
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LG--------r~dEAla~LrrALe 140 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYRE--------EGKKAADCLRTALR 140 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999996 34999999999 67777777655544
No 162
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=94.73 E-value=0.21 Score=51.72 Aligned_cols=60 Identities=13% Similarity=-0.002 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH-------HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcC
Q 000307 1071 ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-------LWLMYINSRTPLNHRLDAYDAALSVLCRCASAS 1138 (1690)
Q Consensus 1071 eaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~-------Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~ 1138 (1690)
+++|+++..|-..|...+|...|++|.+.-.+.-. |+..|.+.+ .|++|+.+|.+....+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG--------~~deA~~~L~~~~~~~ 68 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLG--------RYDEALALLEEALEEF 68 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHC
Confidence 34555555555555555555555555554333322 445555555 5555555555544444
No 163
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.66 E-value=0.039 Score=43.04 Aligned_cols=34 Identities=12% Similarity=0.175 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCC
Q 000307 1070 EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1103 (1690)
Q Consensus 1070 AeaWyeyl~lY~~~~~~~ea~emfekAVelaP~N 1103 (1690)
|++|+.++.+|+.+++-.+|.+.|++|++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 6789999999999999999999999999999875
No 164
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=94.65 E-value=0.058 Score=62.72 Aligned_cols=110 Identities=17% Similarity=0.177 Sum_probs=86.7
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH--HH--HHHHhcCCCcccchHHH
Q 000307 1049 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--LW--LMYINSRTPLNHRLDAY 1124 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~--Lw--~mYINsr~s~ddrl~aY 1124 (1690)
.|+++.||.+|.++ ++.|+.....++|..++....|..+++.+-+.++|+-- |+ |+.+..+ . ..|
T Consensus 115 ~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g-----~-e~~ 183 (290)
T PF04733_consen 115 EGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATG-----G-EKY 183 (290)
T ss_dssp CCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHT-----T-TCC
T ss_pred cCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhC-----c-hhH
Confidence 47789999999876 67888888899999999999999999999999866544 44 4444444 1 378
Q ss_pred HHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhc
Q 000307 1125 DAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1177 (1690)
Q Consensus 1125 drAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLE 1177 (1690)
.+|.-+|++++..+ +.. ..++.-++-++.+.|+|+.|...|..-.
T Consensus 184 ~~A~y~f~El~~~~-~~t-------~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 184 QDAFYIFEELSDKF-GST-------PKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp CHHHHHHHHHHCCS---S-------HHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcc-CCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999998887 555 5778889999999999999999876644
No 165
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=94.62 E-value=0.87 Score=56.59 Aligned_cols=131 Identities=11% Similarity=0.027 Sum_probs=104.6
Q ss_pred HHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHHHHHHHHHHHhhh
Q 000307 1061 RALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCAS 1136 (1690)
Q Consensus 1061 rALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYdrAI~aLe~las 1136 (1690)
++...+|...++||-.+.-++..++..++...+..-++.-|+|-| ...+|+..+ .+.+|++.|.++.+
T Consensus 297 ~~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~n--------k~~~A~e~~~kal~ 368 (484)
T COG4783 297 LAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEAN--------KAKEAIERLKKALA 368 (484)
T ss_pred HHHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHh
Confidence 334445999999999999999999999999999999999999999 447899999 99999999999988
Q ss_pred cCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCc-ccccHHHHHHHhccCCccchhHHHH
Q 000307 1137 ASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDR-HSLFLSDILTCLTISDKLIFWVCCV 1211 (1690)
Q Consensus 1137 ~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE-~~lSLsKi~~YLt~sDkc~AwLc~i 1211 (1690)
.. |+. .=+-+.+.+.|...|+.++||..|++..- .+-.++ .+-. =-+.|-..||+..+-++..
T Consensus 369 l~-P~~-------~~l~~~~a~all~~g~~~eai~~L~~~~~--~~p~dp~~w~~--LAqay~~~g~~~~a~~A~A 432 (484)
T COG4783 369 LD-PNS-------PLLQLNLAQALLKGGKPQEAIRILNRYLF--NDPEDPNGWDL--LAQAYAELGNRAEALLARA 432 (484)
T ss_pred cC-CCc-------cHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCCCchHHHH--HHHHHHHhCchHHHHHHHH
Confidence 88 886 45667789999999999999999999885 222222 1111 1246778888877755543
No 166
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=94.62 E-value=0.39 Score=60.23 Aligned_cols=133 Identities=11% Similarity=0.004 Sum_probs=96.1
Q ss_pred hhhchhhhHHHHHHHHHHhcccc---CchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHh
Q 000307 1024 LKQVELSNEQCVEMALLILNQDA---NKLEGMKKALSLLSRALEA--DPTSEILWITYLLIFYSNTNSVGKDDMFSYSVK 1098 (1690)
Q Consensus 1024 Le~~~~d~qlWl~lAl~~Lnq~~---n~~g~yDAALdLLsrALEI--NPtSAeaWyeyl~lY~~~~~~~ea~emfekAVe 1098 (1690)
++..|....+|-.+|+-+..... ...+.+.+|...+.+++++ +|..+.+|.-++......++..+|...|++|++
T Consensus 369 i~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~ 448 (517)
T PRK10153 369 LKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID 448 (517)
T ss_pred HHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44455566777777664433322 2245678899999998885 888999999999999999999999999999999
Q ss_pred cCCCCHH----HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHH
Q 000307 1099 HNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRIS 1174 (1690)
Q Consensus 1099 laP~NY~----Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~ 1174 (1690)
++| +.. ++..|.-.+ .+++|++.|++...-+ |.- .-+++.+=+.+.-|++...--++
T Consensus 449 L~p-s~~a~~~lG~~~~~~G--------~~~eA~~~~~~A~~L~-P~~---------pt~~~~~~~~f~~~~~~~~~~~~ 509 (517)
T PRK10153 449 LEM-SWLNYVLLGKVYELKG--------DNRLAADAYSTAFNLR-PGE---------NTLYWIENLVFQTSVETVVPYLY 509 (517)
T ss_pred cCC-CHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhcC-CCC---------chHHHHHhccccccHHHHHHHHH
Confidence 998 433 566677788 9999999998876666 442 23566666666666665544444
Q ss_pred h
Q 000307 1175 R 1175 (1690)
Q Consensus 1175 r 1175 (1690)
+
T Consensus 510 ~ 510 (517)
T PRK10153 510 R 510 (517)
T ss_pred h
Confidence 3
No 167
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.58 E-value=0.15 Score=58.17 Aligned_cols=122 Identities=13% Similarity=0.173 Sum_probs=83.7
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH-HHHHHHh-cCCCcccchHHHH
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-LWLMYIN-SRTPLNHRLDAYD 1125 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~-Lw~mYIN-sr~s~ddrl~aYd 1125 (1690)
-.|+||+|++.|.--||.||+..=+.-.-+.-+|--+....|++-|.+-.+-+|.+-. .-|+||+ ++ ++-+.+.-+
T Consensus 111 ~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k--~dP~~A~tn 188 (297)
T COG4785 111 QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQK--LDPKQAKTN 188 (297)
T ss_pred hcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhh--CCHHHHHHH
Confidence 5688999999999999999997766666666666677788999999988888886644 3344554 33 222211110
Q ss_pred ------------------------HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHH
Q 000307 1126 ------------------------AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQ 1171 (1690)
Q Consensus 1126 ------------------------rAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~ 1171 (1690)
-..+.+.+.+.++..+++...-.++|..++|...|.++|..+.|..
T Consensus 189 L~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~ 258 (297)
T COG4785 189 LKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATA 258 (297)
T ss_pred HHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 0112233333333345555566889999999999999999999865
No 168
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.53 E-value=0.81 Score=55.17 Aligned_cols=241 Identities=17% Similarity=0.108 Sum_probs=125.3
Q ss_pred CHHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccC
Q 000307 1103 SYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATG 1182 (1690)
Q Consensus 1103 NY~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~ 1182 (1690)
+-|++..|...+ +|++|+..|..+....+++ -++-+.|+=++-.-|-|..|-+ |-..|
T Consensus 60 ~lWia~C~fhLg--------dY~~Al~~Y~~~~~~~~~~--------~el~vnLAcc~FyLg~Y~eA~~----~~~ka-- 117 (557)
T KOG3785|consen 60 QLWIAHCYFHLG--------DYEEALNVYTFLMNKDDAP--------AELGVNLACCKFYLGQYIEAKS----IAEKA-- 117 (557)
T ss_pred HHHHHHHHHhhc--------cHHHHHHHHHHHhccCCCC--------cccchhHHHHHHHHHHHHHHHH----HHhhC--
Confidence 345666777777 8888988887765544233 2333444455555577777654 22211
Q ss_pred CCCcccccHHHHH--HHhccCCccchhHHHHH----HHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHH
Q 000307 1183 SNDRHSLFLSDIL--TCLTISDKLIFWVCCVY----LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIE 1256 (1690)
Q Consensus 1183 G~sE~~lSLsKi~--~YLt~sDkc~AwLc~iY----dl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~s 1256 (1690)
.+++- -.++. +-...+|.+.. +..-- -++=|.-++.+--..-..+||.++ |.+|+.++|+-...-+-
T Consensus 118 ~k~pL---~~RLlfhlahklndEk~~-~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdv---YkrvL~dn~ey~alNVy 190 (557)
T KOG3785|consen 118 PKTPL---CIRLLFHLAHKLNDEKRI-LTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDV---YKRVLQDNPEYIALNVY 190 (557)
T ss_pred CCChH---HHHHHHHHHHHhCcHHHH-HHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHH---HHHHHhcChhhhhhHHH
Confidence 12320 00111 11223333221 11000 111111222222222356788888 88888888887777777
Q ss_pred HHHHHHHhhcCCcchhhhhcccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCcchh--HHHHHHHhhccCCCccH
Q 000307 1257 MAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSS 1334 (1690)
Q Consensus 1257 mA~dYY~~~~ndEsla~~~n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d~eL--~L~AayL~~k~m~e~Ai 1334 (1690)
||+=||.. +=..-+.++++-||.+.|+..=- ...+.+.+.-. +..|.
T Consensus 191 ~ALCyyKl------------------------------DYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~n-gr~ae 239 (557)
T KOG3785|consen 191 MALCYYKL------------------------------DYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLIN-GRTAE 239 (557)
T ss_pred HHHHHHhc------------------------------chhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhc-cchhH
Confidence 76666653 11222334556666666665543 33344444433 33333
Q ss_pred HHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcccccccchhhcccCCCCCCCCCCCCCcc
Q 000307 1335 VGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPE 1414 (1690)
Q Consensus 1335 ~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ff~gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSD 1414 (1690)
.....+.. |.. ..+.++..||+.=. -+-...+.|+.++-..+.+|+ +
T Consensus 240 ~E~k~lad----N~~----------------~~~~f~~~l~rHNL----VvFrngEgALqVLP~L~~~IP---------E 286 (557)
T KOG3785|consen 240 DEKKELAD----NID----------------QEYPFIEYLCRHNL----VVFRNGEGALQVLPSLMKHIP---------E 286 (557)
T ss_pred HHHHHHHh----ccc----------------ccchhHHHHHHcCe----EEEeCCccHHHhchHHHhhCh---------H
Confidence 33222221 211 13667788886500 000256677777766666664 3
Q ss_pred cccccccchhhhhHHHHHHHHHhhhcChHHHHHHH
Q 000307 1415 FSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAI 1449 (1690)
Q Consensus 1415 fy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AY 1449 (1690)
+=+|+++|-+=+++.+||+...
T Consensus 287 -------------ARlNL~iYyL~q~dVqeA~~L~ 308 (557)
T KOG3785|consen 287 -------------ARLNLIIYYLNQNDVQEAISLC 308 (557)
T ss_pred -------------hhhhheeeecccccHHHHHHHH
Confidence 7788988877799999988653
No 169
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.53 E-value=0.1 Score=47.00 Aligned_cols=58 Identities=14% Similarity=0.122 Sum_probs=52.1
Q ss_pred HHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCc
Q 000307 1076 YLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDE 1142 (1690)
Q Consensus 1076 yl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr 1142 (1690)
+..+|...+...++.+.++++++++|++.. .+.+|...+ .|.+|+..|++..+.. |+.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g--------~~~~A~~~l~~~l~~~-p~~ 62 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLG--------RYEEALEDLERALELS-PDD 62 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhc--------cHHHHHHHHHHHHHHC-CCc
Confidence 356888999999999999999999999988 678899999 9999999999988887 776
No 170
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.45 E-value=0.044 Score=64.17 Aligned_cols=59 Identities=14% Similarity=0.117 Sum_probs=57.1
Q ss_pred CchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH
Q 000307 1047 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1105 (1690)
Q Consensus 1047 n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~ 1105 (1690)
++.|.|+.|..-...||.|||..+.+|.-+...|+.+++.++|.+.|.||.+++|+|-.
T Consensus 126 ~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~ 184 (304)
T KOG0553|consen 126 SKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNES 184 (304)
T ss_pred HHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHH
Confidence 67899999999999999999999999999999999999999999999999999999975
No 171
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=94.42 E-value=0.2 Score=64.21 Aligned_cols=131 Identities=18% Similarity=0.091 Sum_probs=89.0
Q ss_pred HHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhc
Q 000307 1038 ALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINS 1113 (1690)
Q Consensus 1038 Al~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINs 1113 (1690)
|..+++--.-..++|.+|...|.+.|++||-....||.++-.+.+..+-..+.+.|-.+|.++|+|.. |...||..
T Consensus 487 A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~ 566 (777)
T KOG1128|consen 487 AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRL 566 (777)
T ss_pred HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHH
Confidence 33444443433477888888888888888888888888888888888888888888888888888888 55667777
Q ss_pred CCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCC
Q 000307 1114 RTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSN 1184 (1690)
Q Consensus 1114 r~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~ 1184 (1690)
+ +-.+|-..+-+..+.+ -+. -.| -.--+.+..-.|.++.||..+-||+.-..++.
T Consensus 567 ~--------~k~ra~~~l~EAlKcn-~~~----w~i---WENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 567 K--------KKKRAFRKLKEALKCN-YQH----WQI---WENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred h--------hhHHHHHHHHHHhhcC-CCC----Cee---eechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 6 6666666664444433 221 111 11123345667888888888888876333443
No 172
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.37 E-value=0.24 Score=61.74 Aligned_cols=87 Identities=11% Similarity=0.054 Sum_probs=74.3
Q ss_pred CchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHH----HHHHHhcCCCcccchH
Q 000307 1047 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYAL----WLMYINSRTPLNHRLD 1122 (1690)
Q Consensus 1047 n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~L----w~mYINsr~s~ddrl~ 1122 (1690)
.+.|+|..|...|..||.-||+++.+|+..+..|...+....+..-|+++++++|.+... +..+.-.+
T Consensus 369 Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk-------- 440 (539)
T KOG0548|consen 369 FKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMK-------- 440 (539)
T ss_pred HhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH--------
Confidence 578999999999999999999999999999999999999999999999999999876652 23344445
Q ss_pred HHHHHHHHHHHhhhcCCCCc
Q 000307 1123 AYDAALSVLCRCASASDGDE 1142 (1690)
Q Consensus 1123 aYdrAI~aLe~las~~~pDr 1142 (1690)
.|++|+.+|......+ |+.
T Consensus 441 ~ydkAleay~eale~d-p~~ 459 (539)
T KOG0548|consen 441 EYDKALEAYQEALELD-PSN 459 (539)
T ss_pred HHHHHHHHHHHHHhcC-chh
Confidence 8999999997665555 665
No 173
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.26 E-value=0.86 Score=43.69 Aligned_cols=116 Identities=20% Similarity=0.264 Sum_probs=92.4
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHhCCCCchHHHHHHHHHhcCCC--CHH-----HHHHHHhcCCCccc
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLL-IFYSNTNSVGKDDMFSYSVKHNEG--SYA-----LWLMYINSRTPLNH 1119 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~-lY~~~~~~~ea~emfekAVelaP~--NY~-----Lw~mYINsr~s~dd 1119 (1690)
..+.+..|+..+..+++.++.....+..+.. +|+..+.-..+.+.|++|+..+|. .+. +...|...+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 181 (291)
T COG0457 107 ALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALG----- 181 (291)
T ss_pred HHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhc-----
Confidence 3466899999999999999998777777777 899999999999999999997763 333 333344455
Q ss_pred chHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1120 RLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1120 rl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
.++.|+..+....... +.. ....+..+...|...+.+++|+..+.+...
T Consensus 182 ---~~~~a~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 182 ---RYEEALELLEKALKLN-PDD------DAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred ---CHHHHHHHHHHHHhhC-ccc------chHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 8899999998887776 441 267888999999999999999998877775
No 174
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.89 E-value=15 Score=47.21 Aligned_cols=133 Identities=15% Similarity=0.189 Sum_probs=86.7
Q ss_pred hhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCC--HH----HHHHHHHHHHhCCCCchHHHHHHHHHhcCCC
Q 000307 1029 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS--EI----LWITYLLIFYSNTNSVGKDDMFSYSVKHNEG 1102 (1690)
Q Consensus 1029 ~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtS--Ae----aWyeyl~lY~~~~~~~ea~emfekAVelaP~ 1102 (1690)
+|...-+++|-.+++.-. ++|.|-..|++++.+.-.. .. +-+.++++|.+.+... |...+.++++....
T Consensus 57 ~ea~~~l~la~iL~~eT~----n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 57 QEARVRLRLASILLEETE----NLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET 131 (608)
T ss_pred HHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc
Confidence 455777778877777754 4899999999998888542 22 2346678888887777 99999999999844
Q ss_pred ---CHHH-------HHHHHhcCCCcccchHHHHHHHHHHHHhhhcCC--CCcchhhhhhHHHHHHHHHHHhhhcCHHHHH
Q 000307 1103 ---SYAL-------WLMYINSRTPLNHRLDAYDAALSVLCRCASASD--GDEMHASACILDLFLQMLQCFCMSGNTEKAI 1170 (1690)
Q Consensus 1103 ---NY~L-------w~mYINsr~s~ddrl~aYdrAI~aLe~las~~~--pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI 1170 (1690)
+.|. +.+++..+ ++..|++.|..++.... +|. ....+.= +...-+..+.+..+.+|
T Consensus 132 ~~~~~w~~~frll~~~l~~~~~--------d~~~Al~~L~~~~~~a~~~~d~--~~~v~~~--l~~~~l~l~~~~~~d~~ 199 (608)
T PF10345_consen 132 YGHSAWYYAFRLLKIQLALQHK--------DYNAALENLQSIAQLANQRGDP--AVFVLAS--LSEALLHLRRGSPDDVL 199 (608)
T ss_pred cCchhHHHHHHHHHHHHHHhcc--------cHHHHHHHHHHHHHHhhhcCCH--HHHHHHH--HHHHHHHhcCCCchhHH
Confidence 2442 23333334 78899999977666431 232 1222222 22233444667777788
Q ss_pred HHHHhhcc
Q 000307 1171 QRISRLLI 1178 (1690)
Q Consensus 1171 ~tL~rLEq 1178 (1690)
..++++..
T Consensus 200 ~~l~~~~~ 207 (608)
T PF10345_consen 200 ELLQRAIA 207 (608)
T ss_pred HHHHHHHH
Confidence 88887754
No 175
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=93.87 E-value=9.1 Score=48.76 Aligned_cols=361 Identities=13% Similarity=0.066 Sum_probs=194.3
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCC
Q 000307 1060 SRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASD 1139 (1690)
Q Consensus 1060 srALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~ 1139 (1690)
.+-+|-||.+-..|+.+.+.+-.+ .-.++++.+|.-|.--|.+-..|-.||..+ -+...|+.--.+|-+.-..-
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~E----l~skdfe~VEkLF~RCLvkv- 83 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERE----LASKDFESVEKLFSRCLVKV- 83 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHH----HHhhhHHHHHHHHHHHHHHH-
Confidence 566888999999999998886555 677788889999888887777888898877 22234554444443322211
Q ss_pred CCcchhhhhhHHH-HHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccc-------hhHHHH
Q 000307 1140 GDEMHASACILDL-FLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLI-------FWVCCV 1211 (1690)
Q Consensus 1140 pDr~~~Sa~ILDv-LL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~-------AwLc~i 1211 (1690)
=. +|+ -+||-..-. ++|.-+ ..-.--++.|--.=++|- +|--++
T Consensus 84 -Ln-------lDLW~lYl~YVR~-------------------~~~~~~-~~r~~m~qAy~f~l~kig~di~s~siW~eYi 135 (656)
T KOG1914|consen 84 -LN-------LDLWKLYLSYVRE-------------------TKGKLF-GYREKMVQAYDFALEKIGMDIKSYSIWDEYI 135 (656)
T ss_pred -hh-------HhHHHHHHHHHHH-------------------HccCcc-hHHHHHHHHHHHHHHHhccCcccchhHHHHH
Confidence 00 111 111111111 111111 000011223333333333 388888
Q ss_pred HHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhh-cccchhHHHH-----
Q 000307 1212 YLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKET-NLRSAHCFAV----- 1285 (1690)
Q Consensus 1212 Ydl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~-n~k~d~~tKL----- 1285 (1690)
+-+++-.-.|.|=.+- +-...=.+ |++.+.+.=+|.-.|-.+ ++.|++.+|- -.+... .++.+...+-
T Consensus 136 ~FL~~vea~gk~ee~Q-RI~~vRri---Yqral~tPm~nlEkLW~D-Y~~fE~~IN~-~tarK~i~e~s~~Ym~AR~~~q 209 (656)
T KOG1914|consen 136 NFLEGVEAVGKYEENQ-RITAVRRI---YQRALVTPMHNLEKLWKD-YEAFEQEINI-ITARKFIGERSPEYMNARRVYQ 209 (656)
T ss_pred HHHHcccccccHHHHH-HHHHHHHH---HHHHhcCccccHHHHHHH-HHHHHHHHHH-HHHHHHHHhhCHHHHHHHHHHH
Confidence 8899988888887766 33323347 777777777888788777 6777664442 111111 2233222221
Q ss_pred ---HHHHHHHHhc---------chHHHHHHHHHHHHhCCCcc---hh-HHHHHHHhhccCCCccHHHHHHHHHhCCCCCc
Q 000307 1286 ---NHIWCMAVLN---------GLECSMNLLEKYIKLYPSCL---EL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVP 1349 (1690)
Q Consensus 1286 ---N~IRq~I~lE---------dse~al~LfdklLe~~P~d~---eL-~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~ 1349 (1690)
|+++.+-... +.-+.++|-..+++.-.++. += .+...|+ ..+|+++|.--+--+.
T Consensus 210 el~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv---------~yayeQ~ll~l~~~pe 280 (656)
T KOG1914|consen 210 ELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRV---------MYAYEQCLLYLGYHPE 280 (656)
T ss_pred HHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHH---------HHHHHHHHHHHhcCHH
Confidence 2222221110 22233444444443322222 11 2222222 2667888877777677
Q ss_pred hhHHHHHHHHHHHHhcCC--------------hhHHHHHHHH-----------HHHHHhhhcc---c---ccccchhhcc
Q 000307 1350 GIQCIWNQYVEYALQNGR--------------HDFAAELMDR-----------WFHSVWKVQY---S---QVEISDPLVA 1398 (1690)
Q Consensus 1350 g~qcaW~QLiq~Al~~e~--------------~d~ai~L~~~-----------ff~gia~~Q~---~---~deALD~lr~ 1398 (1690)
+|+++.++++...+ .+++..+-++ .|-+.+.++. + .+..-....+
T Consensus 281 ----iWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ 356 (656)
T KOG1914|consen 281 ----IWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNK 356 (656)
T ss_pred ----HHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHH
Confidence 99999998888777 6777777776 2223333332 1 1111111111
Q ss_pred c--CCCCCCCC---------------------------CCCCCcccccccccchhhhhHHHHH-HHHHhhhcChHHHHHH
Q 000307 1399 D--MSHSSPES---------------------------TSTSDPEFSVSNRNQMDVMFGYLNL-SLHRLLQNDWNEARLA 1448 (1690)
Q Consensus 1399 g--~s~i~~es---------------------------~s~~vSDfy~~~~~Q~d~~fa~LGD-~Lyq~Lqg~~~EAf~A 1448 (1690)
. ...+.+.. ++-.--++| =.=.+ =||- .++.+=||..
T Consensus 357 ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVf-----------Va~A~mEy~c--skD~~~AfrI 423 (656)
T KOG1914|consen 357 LLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVF-----------VAAALMEYYC--SKDKETAFRI 423 (656)
T ss_pred HHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhh-----------HHHHHHHHHh--cCChhHHHHH
Confidence 1 11111111 111112333 11122 2444 6899999999
Q ss_pred HHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHH
Q 000307 1449 IDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLL 1492 (1690)
Q Consensus 1449 YDkALk~np~N~~i~cLNNYAYFLSle~~dL~KAEqMS~~~KtV 1492 (1690)
|+--|+.-++. -...+.|+-||+- |.+++.....|+.+
T Consensus 424 FeLGLkkf~d~--p~yv~~YldfL~~----lNdd~N~R~LFEr~ 461 (656)
T KOG1914|consen 424 FELGLKKFGDS--PEYVLKYLDFLSH----LNDDNNARALFERV 461 (656)
T ss_pred HHHHHHhcCCC--hHHHHHHHHHHHH----hCcchhHHHHHHHH
Confidence 99999998877 6777889999886 55666666655443
No 176
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.85 E-value=0.055 Score=42.74 Aligned_cols=34 Identities=0% Similarity=0.024 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCC
Q 000307 1070 EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1103 (1690)
Q Consensus 1070 AeaWyeyl~lY~~~~~~~ea~emfekAVelaP~N 1103 (1690)
|.+|+.++.+|..++.-.+|.+.|++|++++|+|
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 5788888888888888888888888888888863
No 177
>PRK04841 transcriptional regulator MalT; Provisional
Probab=93.72 E-value=1.9 Score=56.20 Aligned_cols=120 Identities=12% Similarity=-0.106 Sum_probs=80.6
Q ss_pred hhhHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHhCCCCchHHHHHHHHHhcCCC--C-HH-------HHHHHHhc
Q 000307 1049 LEGMKKALSLLSRALEADPTSE-----ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG--S-YA-------LWLMYINS 1113 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEINPtSA-----eaWyeyl~lY~~~~~~~ea~emfekAVelaP~--N-Y~-------Lw~mYINs 1113 (1690)
.|+++.|..++.+||+..|... .++..++.++...+...++..++++|++.... + +. ++.+|+..
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 4789999999999999766533 45677888889999999999999999976542 1 11 56677777
Q ss_pred CCCcccchHHHHHHHHHHHHhhhcCC--CCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1114 RTPLNHRLDAYDAALSVLCRCASASD--GDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1114 r~s~ddrl~aYdrAI~aLe~las~~~--pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
+ .++.|...+++...... ... .+....-+...+..++...|+++.|+..+.+...
T Consensus 545 G--------~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~ 601 (903)
T PRK04841 545 G--------FLQAAYETQEKAFQLIEEQHLE--QLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLE 601 (903)
T ss_pred C--------CHHHHHHHHHHHHHHHHHhccc--cccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHH
Confidence 7 66666666544322110 110 1111111244677888889999999987766553
No 178
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=93.57 E-value=0.13 Score=59.06 Aligned_cols=81 Identities=20% Similarity=0.196 Sum_probs=70.9
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHH
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDA 1123 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~a 1123 (1690)
....|+.|++-|.|||-+||+.+.-|-.-+..|.+++.=+.+.+-|++|.+++|+.-- |++..+.+. .
T Consensus 22 ~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~--------~ 93 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK--------G 93 (284)
T ss_pred chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc--------c
Confidence 3678999999999999999999999999999999999999999999999999975433 777777788 8
Q ss_pred HHHHHHHHHHhhh
Q 000307 1124 YDAALSVLCRCAS 1136 (1690)
Q Consensus 1124 YdrAI~aLe~las 1136 (1690)
|+.||..|-+.++
T Consensus 94 ~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 94 YDEAIKVLQRAYS 106 (284)
T ss_pred ccHHHHHHHHHHH
Confidence 8999998866544
No 179
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.56 E-value=0.32 Score=59.10 Aligned_cols=139 Identities=18% Similarity=0.112 Sum_probs=92.6
Q ss_pred cccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHHH----HHHHHHHH
Q 000307 1218 KLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAV----NHIWCMAV 1293 (1690)
Q Consensus 1218 vLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tKL----N~IRq~I~ 1293 (1690)
+.-|+.|++.|+.+.|..- +++|+++......... .. .+....+|+ |+..|++-
T Consensus 212 ke~Gn~~fK~gk~~~A~~~------------------Yerav~~l~~~~~~~~-ee---~~~~~~~k~~~~lNlA~c~lK 269 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKR------------------YERAVSFLEYRRSFDE-EE---QKKAEALKLACHLNLAACYLK 269 (397)
T ss_pred HHhhhHHHhhchHHHHHHH------------------HHHHHHHhhccccCCH-HH---HHHHHHHHHHHhhHHHHHHHh
Confidence 4567788877776666544 4444444332111111 11 223333333 88888888
Q ss_pred hcchHHHHHHHHHHHHhCCCcchh--HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHH
Q 000307 1294 LNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFA 1371 (1690)
Q Consensus 1294 lEdse~al~LfdklLe~~P~d~eL--~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~a 1371 (1690)
+.+..+|+..|.++|++.|.++.- .=--++|.+.. -+.|+.-|++|++++|.|.. |..||+...-.-. +-
T Consensus 270 l~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e-~~~A~~df~ka~k~~P~Nka----~~~el~~l~~k~~---~~ 341 (397)
T KOG0543|consen 270 LKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGE-YDLARDDFQKALKLEPSNKA----ARAELIKLKQKIR---EY 341 (397)
T ss_pred hhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhcc-HHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHHH---HH
Confidence 779999999999999999999987 33345566666 77999999999999999999 9999998765432 22
Q ss_pred HHHHHHHHHHHhhhc
Q 000307 1372 AELMDRWFHSVWKVQ 1386 (1690)
Q Consensus 1372 i~L~~~ff~gia~~Q 1386 (1690)
..=-+.+|..++.--
T Consensus 342 ~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 342 EEKEKKMYANMFAKL 356 (397)
T ss_pred HHHHHHHHHHHhhcc
Confidence 223333566654433
No 180
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=93.49 E-value=0.73 Score=47.80 Aligned_cols=78 Identities=19% Similarity=0.091 Sum_probs=62.9
Q ss_pred hhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCC---CHH----HHHHHHhcCCCcc
Q 000307 1049 LEGMKKALSLLSRALEADPTS---EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG---SYA----LWLMYINSRTPLN 1118 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEINPtS---AeaWyeyl~lY~~~~~~~ea~emfekAVelaP~---NY~----Lw~mYINsr~s~d 1118 (1690)
.|+.+.|..+|.++|+...+. ..+++.++..|...|..+++..+|+++++-.|+ +-. ++....+.+
T Consensus 14 ~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g---- 89 (120)
T PF12688_consen 14 LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG---- 89 (120)
T ss_pred cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC----
Confidence 488899999999999986665 679999999999999999999999999998887 333 445556667
Q ss_pred cchHHHHHHHHHHHHh
Q 000307 1119 HRLDAYDAALSVLCRC 1134 (1690)
Q Consensus 1119 drl~aYdrAI~aLe~l 1134 (1690)
.+++|++.+-..
T Consensus 90 ----r~~eAl~~~l~~ 101 (120)
T PF12688_consen 90 ----RPKEALEWLLEA 101 (120)
T ss_pred ----CHHHHHHHHHHH
Confidence 677777777443
No 181
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.01 E-value=1.9 Score=50.52 Aligned_cols=182 Identities=14% Similarity=0.051 Sum_probs=97.0
Q ss_pred hhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHHHHHHHHHHHhc--chHHHHHHHHHHHHhCCCcchh-HHHHH
Q 000307 1246 DEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLN--GLECSMNLLEKYIKLYPSCLEL-VLMKA 1322 (1690)
Q Consensus 1246 dEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tKLN~IRq~I~lE--dse~al~LfdklLe~~P~d~eL-~L~Aa 1322 (1690)
-.|+.++++.+--..|+... + ..-++-+-+. .-+.++++ ...-|..-.+.+-..-|...-+ .|+|.
T Consensus 26 rnseevv~l~~~~~~~~k~~-----~-----~g~e~w~l~E-qV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam 94 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSG-----A-----LGDEIWTLYE-QVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM 94 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhc-----c-----cCchHHHHHH-HHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 46777777777644444431 0 1112233223 33333333 3344444445555555777777 77777
Q ss_pred HHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcc-------------cc
Q 000307 1323 RLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQY-------------SQ 1389 (1690)
Q Consensus 1323 yL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ff~gia~~Q~-------------~~ 1389 (1690)
+|...++-++|+..|+.+|+.+|.|.. ++--=+-.+-..|+--+||+-...|..-|--.+. .+
T Consensus 95 ~lEa~~~~~~A~e~y~~lL~ddpt~~v----~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f 170 (289)
T KOG3060|consen 95 LLEATGNYKEAIEYYESLLEDDPTDTV----IRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDF 170 (289)
T ss_pred HHHHhhchhhHHHHHHHHhccCcchhH----HHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHH
Confidence 777777777777777777777777766 5555555555555655666665552221111111 22
Q ss_pred cccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHH-hhhcChHHHHHHHHHHHhhccCC
Q 000307 1390 VEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHR-LLQNDWNEARLAIDAALKAAASE 1459 (1690)
Q Consensus 1390 deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq-~Lqg~~~EAf~AYDkALk~np~N 1459 (1690)
..|.=.+..- -.+++ .+ =+.|+-+++.+|. -.-.++.-|..-|++||+.+|.+
T Consensus 171 ~kA~fClEE~-ll~~P--------------~n--~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 171 EKAAFCLEEL-LLIQP--------------FN--PLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred HHHHHHHHHH-HHcCC--------------Cc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence 2222211111 11111 11 1357888997776 12235566888899999999966
No 182
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.00 E-value=0.59 Score=54.44 Aligned_cols=93 Identities=18% Similarity=0.208 Sum_probs=80.5
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHhcCCCC-------HHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchh
Q 000307 1073 WITYLLIFYSNTNSVGKDDMFSYSVKHNEGS-------YALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHA 1145 (1690)
Q Consensus 1073 Wyeyl~lY~~~~~~~ea~emfekAVelaP~N-------Y~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~ 1145 (1690)
.|.-+.=++..+.-.+|.+-|..=|+..|.+ |||+..|..++ .|++|...|..+++.+ |+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg--------~y~~Aa~~f~~~~k~~-P~---- 210 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQG--------DYEDAAYIFARVVKDY-PK---- 210 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcc--------cchHHHHHHHHHHHhC-CC----
Confidence 6766666677777788889999999988875 88999999999 9999999999999988 54
Q ss_pred hhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1146 SACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1146 Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
|...-|.||.|..+....|+.++|..||..+..
T Consensus 211 s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 211 SPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 345689999999999999999999999988874
No 183
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=92.95 E-value=8.5 Score=50.79 Aligned_cols=209 Identities=13% Similarity=0.131 Sum_probs=127.2
Q ss_pred HHHHHHHHhcccc--CchhhHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHhCCCCchHHHHHHHHHhc-------
Q 000307 1034 CVEMALLILNQDA--NKLEGMKKALSLLSRALEADPTS-----EILWITYLLIFYSNTNSVGKDDMFSYSVKH------- 1099 (1690)
Q Consensus 1034 Wl~lAl~~Lnq~~--n~~g~yDAALdLLsrALEINPtS-----AeaWyeyl~lY~~~~~~~ea~emfekAVel------- 1099 (1690)
-||-|+.++-+.. .-..++-++...++-|+|+--+- -..||.|+.+.-.++.-+.|.++||||=-+
T Consensus 815 MlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rm 894 (1416)
T KOG3617|consen 815 MLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRM 894 (1416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHH
Confidence 3555666665532 22344555666666666664332 246899999999999999999999987433
Q ss_pred ---CCCCHH-------------HHHHHHhcCCCcccchHHHHHHHHHHHHh-hhcCCCCcchhhhhhH------HHHHHH
Q 000307 1100 ---NEGSYA-------------LWLMYINSRTPLNHRLDAYDAALSVLCRC-ASASDGDEMHASACIL------DLFLQM 1156 (1690)
Q Consensus 1100 ---aP~NY~-------------Lw~mYINsr~s~ddrl~aYdrAI~aLe~l-as~~~pDr~~~Sa~IL------DvLL~L 1156 (1690)
+|.... -|--||.+-.-.|..+..|..|-..|+.. ...+ -.+.+-.|+|- -.-+.|
T Consensus 895 L~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~-qGk~~kAa~iA~esgd~AAcYhl 973 (1416)
T KOG3617|consen 895 LKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCI-QGKTDKAARIAEESGDKAACYHL 973 (1416)
T ss_pred HHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEee-ccCchHHHHHHHhcccHHHHHHH
Confidence 233222 67789999999999999999998888542 1111 11122222222 244678
Q ss_pred HHHHhhhcCHHHHHHHHHhhcc--cccCCCCcccccHHHHHHHhccCCccchhHHHHH-HHh-hccccHHHHhhccchhh
Q 000307 1157 LQCFCMSGNTEKAIQRISRLLI--PATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY-LVI-YRKLPDAVLQLLECEKE 1232 (1690)
Q Consensus 1157 vqLY~qSGnydKAI~tL~rLEq--~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iY-dl~-YrvLPGd~y~qne~~KE 1232 (1690)
+..|--.|++.+||.-+-|-.+ +|+-=+-|+++-=.-+-++|+.+.+.++-.+.-| +.- |-.--.-+|...|.--+
T Consensus 974 aR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~k 1053 (1416)
T KOG3617|consen 974 ARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGK 1053 (1416)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHH
Confidence 8888899999999875544322 2222222222211223456666666666655555 322 44444567888888888
Q ss_pred hhcCCCCCccc
Q 000307 1233 LFAIDWPPVQL 1243 (1690)
Q Consensus 1233 Af~I~W~yvqv 1243 (1690)
|+++...+++-
T Consensus 1054 ALelAF~tqQf 1064 (1416)
T KOG3617|consen 1054 ALELAFRTQQF 1064 (1416)
T ss_pred HHHHHHhhccc
Confidence 87775555543
No 184
>PRK15331 chaperone protein SicA; Provisional
Probab=92.75 E-value=0.47 Score=51.97 Aligned_cols=92 Identities=10% Similarity=-0.035 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HH
Q 000307 1032 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LW 1107 (1690)
Q Consensus 1032 qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw 1107 (1690)
+.--.+|+..+++ |+|+.|..+|.-..-.||-++.-|.-|+..|-.+++-++|.++|..|.-++++++. .+
T Consensus 38 e~iY~~Ay~~y~~-----Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 38 DGLYAHAYEFYNQ-----GRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred HHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 6666778888877 99999999999999999999999999999999999999999999999999998888 99
Q ss_pred HHHHhcCCCcccchHHHHHHHHHHHHhhh
Q 000307 1108 LMYINSRTPLNHRLDAYDAALSVLCRCAS 1136 (1690)
Q Consensus 1108 ~mYINsr~s~ddrl~aYdrAI~aLe~las 1136 (1690)
..|+-.+ .-+.|...|+....
T Consensus 113 qC~l~l~--------~~~~A~~~f~~a~~ 133 (165)
T PRK15331 113 QCQLLMR--------KAAKARQCFELVNE 133 (165)
T ss_pred HHHHHhC--------CHHHHHHHHHHHHh
Confidence 9999999 99999999965554
No 185
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.61 E-value=0.11 Score=40.93 Aligned_cols=34 Identities=9% Similarity=0.035 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCC
Q 000307 1070 EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1103 (1690)
Q Consensus 1070 AeaWyeyl~lY~~~~~~~ea~emfekAVelaP~N 1103 (1690)
+++|+.++.+|.+++..+++.++|++|++++|+|
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 4789999999999999999999999999999854
No 186
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.19 E-value=2.3 Score=40.89 Aligned_cols=118 Identities=18% Similarity=0.196 Sum_probs=93.6
Q ss_pred chhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHH-HHHhcCCCcccc
Q 000307 1048 KLEGMKKALSLLSRALE--ADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWL-MYINSRTPLNHR 1120 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALE--INPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~-mYINsr~s~ddr 1120 (1690)
..+.+..|+..+..++. ..+....+|+.++.++...+....+.+.+..++...+.+.. ... .|...+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 144 (291)
T COG0457 71 KLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELG------ 144 (291)
T ss_pred HcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcC------
Confidence 34668899999999998 89999999999999999999999999999999998877633 333 677888
Q ss_pred hHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1121 LDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1121 l~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
.+++|+..|.+..... +. .......++.+...+...++++.|+..+.+...
T Consensus 145 --~~~~a~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 145 --DYEEALELYEKALELD-PE----LNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred --CHHHHHHHHHHHHhcC-CC----ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 8999999998775532 31 011255666666668899999999998887775
No 187
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.99 E-value=0.65 Score=56.88 Aligned_cols=275 Identities=11% Similarity=0.056 Sum_probs=151.6
Q ss_pred ccccccchhhhhhhhhchhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHH
Q 000307 1011 SSFFRSRNGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKD 1090 (1690)
Q Consensus 1011 ~rYF~~~~d~in~Le~~~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~ 1090 (1690)
.+|=-..+.--.-|+.-|-++.-|-.-|..++-. ++|+.|+.=.++.++++|.-+-..-+..+++-+.....++.
T Consensus 63 k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~-----~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~ 137 (486)
T KOG0550|consen 63 KTYGNALKNYTFAIDMCPDNASYYSNRAATLMML-----GRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAE 137 (486)
T ss_pred hhHHHHHHHHHHHHHhCccchhhhchhHHHHHHH-----HhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHH
Confidence 3343333333345556666667777777766665 78899999999999999999999988888887777777766
Q ss_pred HHHHHHHhcCCCCHHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHH
Q 000307 1091 DMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAI 1170 (1690)
Q Consensus 1091 emfekAVelaP~NY~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI 1170 (1690)
+.|. |+... .. -.|+..++.++-.+ .+ -+||..= -+.=++||.+.|+|+.|+
T Consensus 138 ~~~~--------~~~~~---~~------------anal~~~~~~~~s~-s~---~pac~~a-~~lka~cl~~~~~~~~a~ 189 (486)
T KOG0550|consen 138 EKLK--------SKQAY---KA------------ANALPTLEKLAPSH-SR---EPACFKA-KLLKAECLAFLGDYDEAQ 189 (486)
T ss_pred HHhh--------hhhhh---HH------------hhhhhhhhcccccc-cC---CchhhHH-HHhhhhhhhhcccchhHH
Confidence 6555 22111 11 12333333344333 11 2333322 222356666666666665
Q ss_pred HHHHhhcccccCCCCc---------------ccccHHHHHHHhccCCccchhHHHHH----HHhhccccHHHHhhccchh
Q 000307 1171 QRISRLLIPATGSNDR---------------HSLFLSDILTCLTISDKLIFWVCCVY----LVIYRKLPDAVLQLLECEK 1231 (1690)
Q Consensus 1171 ~tL~rLEq~Al~G~sE---------------~~lSLsKi~~YLt~sDkc~AwLc~iY----dl~YrvLPGd~y~qne~~K 1231 (1690)
+.--++.. ++..+- ..+-...++.-|+++..+. ..+-.+ .++=.++-|+-...+|..+
T Consensus 190 ~ea~~ilk--ld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~-~sk~~~~~~k~le~~k~~gN~~fk~G~y~ 266 (486)
T KOG0550|consen 190 SEAIDILK--LDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQ-KSKSASMMPKKLEVKKERGNDAFKNGNYR 266 (486)
T ss_pred HHHHHHHh--cccchhHHHHhcccccccccchHHHHHHHhhhhccChhhh-hHHhHhhhHHHHHHHHhhhhhHhhccchh
Confidence 54333332 111110 0001111111122221111 111111 4455577899999999999
Q ss_pred hhhcCCCCCcccchhhhhhHHHHHHH----HHHHHHhhcCCcchhhhh---cccchh-HHHHH--HHHHHHHhcchHHHH
Q 000307 1232 ELFAIDWPPVQLEDDEKQRAIKLIEM----AVNSVELYSNGESLEKET---NLRSAH-CFAVN--HIWCMAVLNGLECSM 1301 (1690)
Q Consensus 1232 EAf~I~W~yvqvlkdEPdnalAL~sm----A~dYY~~~~ndEsla~~~---n~k~d~-~tKLN--~IRq~I~lEdse~al 1301 (1690)
+|+.+ |.+.+.+||++.--+..+ |.-+.+ .+...-+... -.+++. -.|-- --.|++++|.++.++
T Consensus 267 ~A~E~---Yteal~idP~n~~~naklY~nra~v~~r--Lgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV 341 (486)
T KOG0550|consen 267 KAYEC---YTEALNIDPSNKKTNAKLYGNRALVNIR--LGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAV 341 (486)
T ss_pred HHHHH---HHHhhcCCccccchhHHHHHHhHhhhcc--cCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 999999999975433333 211222 1111111111 112221 12221 134666688999999
Q ss_pred HHHHHHHHhCCCcchh--HHHHHHHhhc
Q 000307 1302 NLLEKYIKLYPSCLEL--VLMKARLQKH 1327 (1690)
Q Consensus 1302 ~LfdklLe~~P~d~eL--~L~AayL~~k 1327 (1690)
+-|.+.|++-.+ +++ +|.-+-+-.|
T Consensus 342 ~d~~~a~q~~~s-~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 342 EDYEKAMQLEKD-CEIRRTLREAQLALK 368 (486)
T ss_pred HHHHHHHhhccc-cchHHHHHHHHHHHH
Confidence 999999999988 666 6666655444
No 188
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=91.90 E-value=0.16 Score=38.67 Aligned_cols=27 Identities=30% Similarity=0.765 Sum_probs=25.1
Q ss_pred HHHHHHhhhccccchHHHHHHHHhhhc
Q 000307 1644 SERFFKRALSVYPFSIKLWKCYYDLSK 1670 (1690)
Q Consensus 1644 ~~rfy~~AlsvyPfS~~LW~~y~~~~k 1670 (1690)
++..|++|+...|.+..+|.+|+.|+.
T Consensus 6 ~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 6 ARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 488999999999999999999999975
No 189
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.50 E-value=13 Score=47.64 Aligned_cols=340 Identities=16% Similarity=0.146 Sum_probs=193.9
Q ss_pred chHHHHHHHHHHHHhCCCcchh-HHHHHHHhhccCCCccH-HHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHH
Q 000307 1296 GLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSS-VGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAE 1373 (1690)
Q Consensus 1296 dse~al~LfdklLe~~P~d~eL-~L~AayL~~k~m~e~Ai-~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~ 1373 (1690)
..+.+...|++-++--|..++| .-|.+++.........+ ..|+.|++..=.... ..-.|--||+....++++..+..
T Consensus 94 ~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~-S~~lWdkyie~en~qks~k~v~~ 172 (577)
T KOG1258|consen 94 NAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFL-SDPLWDKYIEFENGQKSWKRVAN 172 (577)
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchh-ccHHHHHHHHHHhccccHHHHHH
Confidence 7788899999999999999999 77888877777565666 899999988877765 44599999999999999999999
Q ss_pred HHHH-----------HHHHHhhhccc----ccccchhhcccCCCCC-----------CCCCCCCCcccccccccchhhhh
Q 000307 1374 LMDR-----------WFHSVWKVQYS----QVEISDPLVADMSHSS-----------PESTSTSDPEFSVSNRNQMDVMF 1427 (1690)
Q Consensus 1374 L~~~-----------ff~gia~~Q~~----~deALD~lr~g~s~i~-----------~es~s~~vSDfy~~~~~Q~d~~f 1427 (1690)
|.++ ||..+-++-+. .--..|.+-++...+. .+.-+..+ ++...++.-.|.-+
T Consensus 173 iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v-~~~~~~s~~l~~~~ 251 (577)
T KOG1258|consen 173 IYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGV-KDSTDPSKSLTEEK 251 (577)
T ss_pred HHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHH-hhccCccchhhHHH
Confidence 9988 66665554431 1112222222211111 11111111 12333444444434
Q ss_pred HHHHH--HHHHhhhc---ChHHHHHHHHHHHh-----hccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHHHHHHh
Q 000307 1428 GYLNL--SLHRLLQN---DWNEARLAIDAALK-----AAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLD 1497 (1690)
Q Consensus 1428 a~LGD--~Lyq~Lqg---~~~EAf~AYDkALk-----~np~N~~i~cLNNYAYFLSle~~dL~KAEqMS~~~KtVsTYLD 1497 (1690)
.++.- .+|+.... ...|...-||...+ .+|.. ..=|-||-|||...-+ .+ +-+
T Consensus 252 ~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~--~aql~nw~~yLdf~i~--~g-------------~~~ 314 (577)
T KOG1258|consen 252 TILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLD--QAQLKNWRYYLDFEIT--LG-------------DFS 314 (577)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCccc--HHHHHHHHHHhhhhhh--cc-------------cHH
Confidence 34433 22221111 12233344454443 23332 2223333333332110 00 111
Q ss_pred hhcccccccccc----hhhhccccchhhHHHHhhhcCCCCCChhhHHHHHhhccCCCCcccccccccchhHHHHHHHhhc
Q 000307 1498 RARSLPYLKLLP----RQFINNIERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIV 1573 (1690)
Q Consensus 1498 TAWILf~~~~lA----RiYI~~i~k~rv~~liDqaL~~~S~dsS~vNkALE~W~g~slLpqKI~~kKyI~dfVE~ime~~ 1573 (1690)
..-+||.+..++ -.|| +|+-.+.... .+.+.++-|+..=. .=.+|++ -+.+..++..+-.
T Consensus 315 ~~~~l~ercli~cA~Y~efW-----iky~~~m~~~-----~~~~~~~~~~~~~~-~i~~k~~-----~~i~L~~a~f~e~ 378 (577)
T KOG1258|consen 315 RVFILFERCLIPCALYDEFW-----IKYARWMESS-----GDVSLANNVLARAC-KIHVKKT-----PIIHLLEARFEES 378 (577)
T ss_pred HHHHHHHHHHhHHhhhHHHH-----HHHHHHHHHc-----CchhHHHHHHHhhh-hhcCCCC-----cHHHHHHHHHHHh
Confidence 123444444422 2233 2222222222 23344554444110 0002333 3667778777777
Q ss_pred CcchhhHHHHHHHhhccCCCCCCCCCchhHHHHHhhhhhhhhhcc-----------CC-----CCchHHHHHHHHHhhhc
Q 000307 1574 PSNYQLAFSVFKLLNKDHNPNITDAVPESVLFWASSSLVSAIFHA-----------VP-----VAPEYVWVEAAGILGNI 1637 (1690)
Q Consensus 1574 P~Ny~LALav~kll~k~~~~~~~d~~s~~~~fwA~s~l~nai~~a-----------~p-----vape~vWveAa~~l~~l 1637 (1690)
=.|+..|..+.-.+..++ ++....+.+|+.+.--.+-+.+ +| ---+..-|.-+-+...+
T Consensus 379 ~~n~~~A~~~lq~i~~e~-----pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i 453 (577)
T KOG1258|consen 379 NGNFDDAKVILQRIESEY-----PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKI 453 (577)
T ss_pred hccHHHHHHHHHHHHhhC-----CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHH
Confidence 788888886655555444 3455566777765422221111 11 11245557777788888
Q ss_pred hhHHHHHHHHHHhhhccccchHHHHHHHHhhhcccCCh
Q 000307 1638 SSIEEISERFFKRALSVYPFSIKLWKCYYDLSKTKGDL 1675 (1690)
Q Consensus 1638 ~~~~~i~~rfy~~AlsvyPfS~~LW~~y~~~~k~~g~~ 1675 (1690)
++-..-+++...+|++.+|+|-.||-.++.|++.++..
T Consensus 454 ~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 454 REDADLARIILLEANDILPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred hcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcc
Confidence 88888889999999999999999999999999999965
No 190
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=91.39 E-value=23 Score=47.20 Aligned_cols=362 Identities=11% Similarity=0.087 Sum_probs=204.0
Q ss_pred hcccc-CchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC------------CchHHHHHHHHHhcCCCCHH--H
Q 000307 1042 LNQDA-NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN------------SVGKDDMFSYSVKHNEGSYA--L 1106 (1690)
Q Consensus 1042 Lnq~~-n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~------------~~ea~emfekAVelaP~NY~--L 1106 (1690)
|++.. -..|++|+||.-.+-- .+..+|-.++.+-.+-.. ...+...+++|.+.. ++.. +
T Consensus 733 l~FSfyvtiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~-~e~eakv 806 (1416)
T KOG3617|consen 733 LDFSFYVTIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG-EEDEAKV 806 (1416)
T ss_pred hceeEEEEeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC-cchhhHH
Confidence 44443 4678999998755432 456788888776443222 112235677777765 3444 8
Q ss_pred HHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCc
Q 000307 1107 WLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDR 1186 (1690)
Q Consensus 1107 w~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE 1186 (1690)
+-+-|..+ +.++|+.+|-+. + | -|+| =.||..+|.++.|++.- |. .+-..-
T Consensus 807 AvLAieLg--------MlEeA~~lYr~c-k-----R-------~DLl---NKlyQs~g~w~eA~eiA---E~--~DRiHL 857 (1416)
T KOG3617|consen 807 AVLAIELG--------MLEEALILYRQC-K-----R-------YDLL---NKLYQSQGMWSEAFEIA---ET--KDRIHL 857 (1416)
T ss_pred HHHHHHHh--------hHHHHHHHHHHH-H-----H-------HHHH---HHHHHhcccHHHHHHHH---hh--ccceeh
Confidence 99999999 999999998332 1 2 3444 35677899999998722 11 111111
Q ss_pred ccccHHHHHHHhccCCccchhHHHH-----H-HHhhccc---cHH--HHhhccchhhhhcCCCC-CcccchhhhhhHHHH
Q 000307 1187 HSLFLSDILTCLTISDKLIFWVCCV-----Y-LVIYRKL---PDA--VLQLLECEKELFAIDWP-PVQLEDDEKQRAIKL 1254 (1690)
Q Consensus 1187 ~~lSLsKi~~YLt~sDkc~AwLc~i-----Y-dl~YrvL---PGd--~y~qne~~KEAf~I~W~-yvqvlkdEPdnalAL 1254 (1690)
--+--...-||...-+|.+.|.+- | .-.+|-| |+. .|-+..+++.+|.. |- |-. ...|-|-|++.
T Consensus 858 -r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~W-WgqYlE-S~GemdaAl~~ 934 (1416)
T KOG3617|consen 858 -RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSW-WGQYLE-SVGEMDAALSF 934 (1416)
T ss_pred -hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHH-HHHHHh-cccchHHHHHH
Confidence 011123455666666676655442 2 1122222 222 34444455555555 43 332 23577889999
Q ss_pred HHHHHHHHHh-----hcCCcchhhhh---cccchhHHHHHHHHHHHH-hcchHHHHHHHHHH------------------
Q 000307 1255 IEMAVNSVEL-----YSNGESLEKET---NLRSAHCFAVNHIWCMAV-LNGLECSMNLLEKY------------------ 1307 (1690)
Q Consensus 1255 ~smA~dYY~~-----~~ndEsla~~~---n~k~d~~tKLN~IRq~I~-lEdse~al~Lfdkl------------------ 1307 (1690)
.+.|-|||.. +.|+-+.+... +.+.+.|.-| ..+.. -++..+|+..|.++
T Consensus 935 Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhl---aR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~ 1011 (1416)
T KOG3617|consen 935 YSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHL---ARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDR 1011 (1416)
T ss_pred HHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 9998888875 12333333333 3444444433 22222 22444444444332
Q ss_pred -HHhC--CCcchhHHHHHHHhhcc-CCCccHHHHHH------HHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHH
Q 000307 1308 -IKLY--PSCLELVLMKARLQKHD-FGDLSSVGFEE------ALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1377 (1690)
Q Consensus 1308 -Le~~--P~d~eL~L~AayL~~k~-m~e~Ai~vfe~------aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ 1377 (1690)
+.+. ..--+++-+|.|..-++ --..|+..|.+ ||++.=. .-|--=.|||---+..+.=.++++-|..
T Consensus 1012 L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~---tqQf~aL~lIa~DLd~~sDp~ll~Rcad 1088 (1416)
T KOG3617|consen 1012 LANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFR---TQQFSALDLIAKDLDAGSDPKLLRRCAD 1088 (1416)
T ss_pred HHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHh---hcccHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 1111 11123345566665555 22244444433 3332211 1122346788888888777888888999
Q ss_pred HHHHHhhhcc---------cccccchhhcccCCCCCCCCC----CCCCcccccccccchhhhhHHHHHHHHHhhhcChHH
Q 000307 1378 WFHSVWKVQY---------SQVEISDPLVADMSHSSPEST----STSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNE 1444 (1690)
Q Consensus 1378 ff~gia~~Q~---------~~deALD~lr~g~s~i~~es~----s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~E 1444 (1690)
||..+..|++ +..+|+.++...+..++.+.. +.-.+||-. +-.-.+.-+++++..| ||.+.-
T Consensus 1089 FF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e---~~R~~vLeqvae~c~q--QG~Yh~ 1163 (1416)
T KOG3617|consen 1089 FFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNE---QERKQVLEQVAELCLQ--QGAYHA 1163 (1416)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccH---HHHHHHHHHHHHHHHh--ccchHH
Confidence 9999999996 788999998877777765442 211233332 2223346899999999 998888
Q ss_pred HHHHHHHH
Q 000307 1445 ARLAIDAA 1452 (1690)
Q Consensus 1445 Af~AYDkA 1452 (1690)
|-.-|-.|
T Consensus 1164 AtKKfTQA 1171 (1416)
T KOG3617|consen 1164 ATKKFTQA 1171 (1416)
T ss_pred HHHHHhhh
Confidence 77655443
No 191
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.34 E-value=6.6 Score=46.22 Aligned_cols=140 Identities=16% Similarity=0.115 Sum_probs=88.3
Q ss_pred chHHHHHHHHHHHHhCCCc------chh--HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCC
Q 000307 1296 GLECSMNLLEKYIKLYPSC------LEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGR 1367 (1690)
Q Consensus 1296 dse~al~LfdklLe~~P~d------~eL--~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~ 1367 (1690)
+++++++|+..++.-.+.- -.| .++-|-|.... .+.|...+.++-..=|+-.. .=.-.+..+=..++
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~-~~lAq~C~~~L~~~fp~S~R----V~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGR-DDLAQKCINQLRDRFPGSKR----VGKLKAMLLEATGN 101 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhCCCChh----HHHHHHHHHHHhhc
Confidence 7888888888888766655 223 44444455555 56777888887777777665 21122222334678
Q ss_pred hhHHHHHHHH----------HHH---HHhhhcccccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHH
Q 000307 1368 HDFAAELMDR----------WFH---SVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSL 1434 (1690)
Q Consensus 1368 ~d~ai~L~~~----------ff~---gia~~Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L 1434 (1690)
+++|+++... ++. .+.+-|.+.-+|+..+-.- ..-|+ +.|. -...|.++|
T Consensus 102 ~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~Y------------L~~F~---~D~E--AW~eLaeiY 164 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEY------------LDKFM---NDQE--AWHELAEIY 164 (289)
T ss_pred hhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHH------------HHHhc---CcHH--HHHHHHHHH
Confidence 8888887766 221 2333333444444443211 11233 3344 236778899
Q ss_pred HHhhhcChHHHHHHHHHHHhhccCC
Q 000307 1435 HRLLQNDWNEARLAIDAALKAAASE 1459 (1690)
Q Consensus 1435 yq~Lqg~~~EAf~AYDkALk~np~N 1459 (1690)
.. .|+++.|.--||.++=..|.|
T Consensus 165 ~~--~~~f~kA~fClEE~ll~~P~n 187 (289)
T KOG3060|consen 165 LS--EGDFEKAAFCLEELLLIQPFN 187 (289)
T ss_pred Hh--HhHHHHHHHHHHHHHHcCCCc
Confidence 99 999999999999999999999
No 192
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.20 E-value=0.27 Score=54.62 Aligned_cols=83 Identities=17% Similarity=0.122 Sum_probs=60.0
Q ss_pred hhhhhchhhhHHHHHH--HHHHhccccC---chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC-----------
Q 000307 1022 NKLKQVELSNEQCVEM--ALLILNQDAN---KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN----------- 1085 (1690)
Q Consensus 1022 n~Le~~~~d~qlWl~l--Al~~Lnq~~n---~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~----------- 1085 (1690)
......|+|.+.+..- ||..|.|..+ +..-+..|+.-|..||.|||+-..+++-++.-|+.++.
T Consensus 16 a~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~ 95 (186)
T PF06552_consen 16 AAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEY 95 (186)
T ss_dssp HHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHH
Confidence 3567788898888775 4555555433 45789999999999999999999999999988877654
Q ss_pred CchHHHHHHHHHhcCCCCH
Q 000307 1086 SVGKDDMFSYSVKHNEGSY 1104 (1690)
Q Consensus 1086 ~~ea~emfekAVelaP~NY 1104 (1690)
-++|.++|++||..+|.|-
T Consensus 96 F~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-H
T ss_pred HHHHHHHHHHHHhcCCCcH
Confidence 3456789999999999774
No 193
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.05 E-value=0.36 Score=37.64 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhhcChHHHHHHHHHHHhhccCC
Q 000307 1428 GYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1459 (1690)
Q Consensus 1428 a~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N 1459 (1690)
-.||.++++ .|++++|...|++||..+|++
T Consensus 5 ~~lg~~~~~--~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 5 YYLGQAYYQ--LGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHH--TT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHH--hCCHHHHHHHHHHHHHHCcCC
Confidence 678999999 999999999999999999975
No 194
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=91.03 E-value=0.29 Score=44.84 Aligned_cols=50 Identities=12% Similarity=0.155 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhc
Q 000307 1050 EGMKKALSLLSRALEAD-------PTSEILWITYLLIFYSNTNSVGKDDMFSYSVKH 1099 (1690)
Q Consensus 1050 g~yDAALdLLsrALEIN-------PtSAeaWyeyl~lY~~~~~~~ea~emfekAVel 1099 (1690)
|+|+.|+..|.+||++- |.-+.+++.++.+|..+++..+|.+++++|++.
T Consensus 19 ~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 19 GRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp T-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77888888888888651 234677888888888888888888888888875
No 195
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=90.95 E-value=0.38 Score=56.98 Aligned_cols=69 Identities=19% Similarity=0.168 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH
Q 000307 1032 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1105 (1690)
Q Consensus 1032 qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~ 1105 (1690)
-+-+++|... -+.|+.++|..+|.|||..+|+.+.++.+|+.+--..++-.+|+.+|-+|..++|.|-.
T Consensus 117 ~~Al~~A~~~-----~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 117 ILALKAAGRS-----RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred HHHHHHHHHH-----HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence 4444444433 34588999999999999999999999999999977777778999999999999999987
No 196
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=90.70 E-value=1.3 Score=52.22 Aligned_cols=173 Identities=15% Similarity=0.164 Sum_probs=99.6
Q ss_pred cccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCcchhHHH
Q 000307 1241 VQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLM 1320 (1690)
Q Consensus 1241 vqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d~eL~L~ 1320 (1690)
.+.++++|+++-+-++++ ++=. ++....... +-+ .+.+ .+.-+.+++++|+.+|.+..|.+.
T Consensus 9 ~~~v~~~P~di~~Wl~li-~~Qd------~~~~~~~~~-----~~~-~~a~-----~E~klsilerAL~~np~~~~L~l~ 70 (321)
T PF08424_consen 9 NRRVRENPHDIEAWLELI-EFQD------ELFRLQSSS-----KAE-RRAL-----AERKLSILERALKHNPDSERLLLG 70 (321)
T ss_pred HHHHHhCcccHHHHHHHH-HHHH------Hhccccccc-----hhh-HHHH-----HHHHHHHHHHHHHhCCCCHHHHHH
Confidence 455788899988888883 4332 222211011 111 1111 345677999999999999999443
Q ss_pred HHHHhhccCCCccH-HHHHHHHHhCCCCCchhHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHHHhhhcccccccchhh
Q 000307 1321 KARLQKHDFGDLSS-VGFEEALIKWPKGVPGIQCIWNQYVEYALQNG---RHDFAAELMDRWFHSVWKVQYSQVEISDPL 1396 (1690)
Q Consensus 1321 AayL~~k~m~e~Ai-~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e---~~d~ai~L~~~ff~gia~~Q~~~deALD~l 1396 (1690)
-..+-.+-.+.+.+ ..|+++|...|++.. +|..||.+....- +++.+..+..+ ++..+.......
T Consensus 71 ~l~~~~~~~~~~~l~~~we~~l~~~~~~~~----LW~~yL~~~q~~~~~f~v~~~~~~y~~---~l~~L~~~~~~~---- 139 (321)
T PF08424_consen 71 YLEEGEKVWDSEKLAKKWEELLFKNPGSPE----LWREYLDFRQSNFASFTVSDVRDVYEK---CLRALSRRRSGR---- 139 (321)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCChH----HHHHHHHHHHHHhccCcHHHHHHHHHH---HHHHHHHhhccc----
Confidence 33333333244554 899999999999999 9999999888743 34444444433 333333211111
Q ss_pred cccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhcc
Q 000307 1397 VADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAA 1457 (1690)
Q Consensus 1397 r~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np 1457 (1690)
..++. + ..++. ..++.=++..|.+-.=-|-.+-|++++...|.+|=
T Consensus 140 --~~~~~----~---~~~~e------~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 140 --MTSHP----D---LPELE------EFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred --ccccc----c---hhhHH------HHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 01111 1 11211 11223334444443338999999999988887764
No 197
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.61 E-value=0.23 Score=40.70 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=30.9
Q ss_pred HHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHH
Q 000307 1337 FEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAE 1373 (1690)
Q Consensus 1337 fe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~ 1373 (1690)
|+++|+++|+|+. +|+.|.......|++++|++
T Consensus 2 y~kAie~~P~n~~----a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAE----AYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHH----HHHHHHHHHHHCcCHHhhcC
Confidence 7899999999999 99999999999999999863
No 198
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.37 E-value=0.37 Score=38.10 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=27.2
Q ss_pred hHHHHHHHHHhhhcChHHHHHHHHHHHhhccCC
Q 000307 1427 FGYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1459 (1690)
Q Consensus 1427 fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N 1459 (1690)
+-.+|.+++. .|++++|...|++||+.+|++
T Consensus 4 ~~~~g~~~~~--~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 4 YYNLGNAYFQ--LGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHH--TT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHH--hCCchHHHHHHHHHHHHCcCC
Confidence 3678999999 999999999999999999974
No 199
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.01 E-value=0.48 Score=37.25 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=27.8
Q ss_pred hHHHHHHHHHhhhcChHHHHHHHHHHHhhccCC
Q 000307 1427 FGYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1459 (1690)
Q Consensus 1427 fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N 1459 (1690)
+-.+|.+|.+ .|+.++|...|++|++++|+|
T Consensus 4 ~~~lg~~y~~--~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 4 YYNLGKIYEQ--LGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHH--TTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHH--cCCHHHHHHHHHHHHhhCCCC
Confidence 3578999999 999999999999999999954
No 200
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.77 E-value=1 Score=55.00 Aligned_cols=86 Identities=16% Similarity=0.142 Sum_probs=68.5
Q ss_pred CchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHHHHHHhcCCCcccchHHH-H
Q 000307 1047 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAY-D 1125 (1690)
Q Consensus 1047 n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw~mYINsr~s~ddrl~aY-d 1125 (1690)
.+...|++|+..=.++|+++|+++-++|--++.|..++.-+.|...|++|+++.|.|-.+..-++... .|...| +
T Consensus 268 lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~----~k~~~~~~ 343 (397)
T KOG0543|consen 268 LKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLK----QKIREYEE 343 (397)
T ss_pred HhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH----HHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999987443333322 112233 3
Q ss_pred HHHHHHHHhhh
Q 000307 1126 AALSVLCRCAS 1136 (1690)
Q Consensus 1126 rAI~aLe~las 1136 (1690)
+.-.+|-+|-+
T Consensus 344 kekk~y~~mF~ 354 (397)
T KOG0543|consen 344 KEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHhh
Confidence 33556655544
No 201
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=89.74 E-value=1 Score=46.02 Aligned_cols=51 Identities=20% Similarity=0.235 Sum_probs=43.4
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHh
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVK 1098 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVe 1098 (1690)
..|+++.|+.++.+++++||.+..+|..+...|...+...+|...|++..+
T Consensus 74 ~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 74 EAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 347899999999999999999999999999999999999999888887654
No 202
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=89.71 E-value=0.71 Score=57.26 Aligned_cols=102 Identities=19% Similarity=0.194 Sum_probs=80.1
Q ss_pred CchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHHHHHHhcCCCcccchHHHHH
Q 000307 1047 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDA 1126 (1690)
Q Consensus 1047 n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw~mYINsr~s~ddrl~aYdr 1126 (1690)
-+...||.|.+++++||+++|+.++.|-.-++.|.+...--+|+.-+.+|++++| .|..+ |...+ +-..++..|-+
T Consensus 15 l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP-~~~K~--Y~rrg-~a~m~l~~~~~ 90 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDP-TYIKA--YVRRG-TAVMALGEFKK 90 (476)
T ss_pred cccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCc-hhhhe--eeecc-HHHHhHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999996 44421 22111 33344449999
Q ss_pred HHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHH
Q 000307 1127 ALSVLCRCASASDGDEMHASACILDLFLQMLQCF 1160 (1690)
Q Consensus 1127 AI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY 1160 (1690)
|+..|+..++.. |++ -++.-.+-.+-
T Consensus 91 A~~~l~~~~~l~-Pnd-------~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 91 ALLDLEKVKKLA-PND-------PDATRKIDECN 116 (476)
T ss_pred HHHHHHHhhhcC-cCc-------HHHHHHHHHHH
Confidence 999999988887 777 55554444443
No 203
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.80 E-value=6.7 Score=46.43 Aligned_cols=218 Identities=16% Similarity=0.071 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHH---hc
Q 000307 1123 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTC---LT 1199 (1690)
Q Consensus 1123 aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~Y---Lt 1199 (1690)
+|-.+|..-+.-... ++. .+...+|..-|...|.|.-.|+.| .+ |..+ -+..|+.+ +.
T Consensus 23 nyq~~ine~~~~~~~--~~~-------~e~d~y~~raylAlg~~~~~~~eI--~~-----~~~~---~lqAvr~~a~~~~ 83 (299)
T KOG3081|consen 23 NYQQCINEAEKFSSS--KTD-------VELDVYMYRAYLALGQYQIVISEI--KE-----GKAT---PLQAVRLLAEYLE 83 (299)
T ss_pred HHHHHHHHHHhhccc--cch-------hHHHHHHHHHHHHccccccccccc--cc-----ccCC---hHHHHHHHHHHhh
Confidence 677777755333222 122 567778888899999999888865 22 3343 23444433 32
Q ss_pred -cCC--ccch----hHHHHH---HHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCc
Q 000307 1200 -ISD--KLIF----WVCCVY---LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGE 1269 (1690)
Q Consensus 1200 -~sD--kc~A----wLc~iY---dl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndE 1269 (1690)
.+. ..++ |++..+ ....+.+-+-+|+..+-..+|+.+ .......|---.-+.+...+.-...+. .
T Consensus 84 ~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~---~~~~~~lE~~Al~VqI~lk~~r~d~A~--~ 158 (299)
T KOG3081|consen 84 LESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKA---LHLGENLEAAALNVQILLKMHRFDLAE--K 158 (299)
T ss_pred CcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHH---HhccchHHHHHHHHHHHHHHHHHHHHH--H
Confidence 222 2333 777777 678999999999999999999998 555433332222222222112111101 1
Q ss_pred chhhhhcccchhHHHHHHHHHH-----HHhcchHHHHHHHHHHHHhCCCcchh--HHHHHHHhhccCCCccHHHHHHHHH
Q 000307 1270 SLEKETNLRSAHCFAVNHIWCM-----AVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALI 1342 (1690)
Q Consensus 1270 sla~~~n~k~d~~tKLN~IRq~-----I~lEdse~al~LfdklLe~~P~d~eL--~L~AayL~~k~m~e~Ai~vfe~aL~ 1342 (1690)
.+..- ...+.+.-|+.+.+. ..-+-.+.|.=.|..+=+.+|..+.+ -+....|++.+ .++|..+++++|.
T Consensus 159 ~lk~m--q~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~-~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 159 ELKKM--QQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGR-YEEAESLLEEALD 235 (299)
T ss_pred HHHHH--HccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcC-HHHHHHHHHHHHh
Confidence 12221 233344444323222 22234556666777777755555555 77778888888 8899999999999
Q ss_pred hCCCCCchhHHHHHHHHHHHHhcCChhHH
Q 000307 1343 KWPKGVPGIQCIWNQYVEYALQNGRHDFA 1371 (1690)
Q Consensus 1343 ~~PkNa~g~qcaW~QLiq~Al~~e~~d~a 1371 (1690)
..|+.+. .-.-+|-++...|..+++
T Consensus 236 kd~~dpe----tL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 236 KDAKDPE----TLANLIVLALHLGKDAEV 260 (299)
T ss_pred ccCCCHH----HHHHHHHHHHHhCCChHH
Confidence 9999988 666666667666666544
No 204
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=88.30 E-value=0.92 Score=41.62 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=43.0
Q ss_pred HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhh
Q 000307 1106 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRL 1176 (1690)
Q Consensus 1106 Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rL 1176 (1690)
++.+|..++ .|++|+..|++..... ..-.+....+..++..|..+|...|++++|+..+.+-
T Consensus 11 la~~~~~~~--------~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 11 LARVYRELG--------RYDEALDYYEKALDIE-EQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHTT---------HHHHHHHHHHHHHHH-HHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHcC--------CHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777888888 7777777765543321 0001234567889999999999999999999976554
No 205
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=87.50 E-value=3.8 Score=50.97 Aligned_cols=115 Identities=14% Similarity=0.116 Sum_probs=91.4
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCH---------HHHHHHHhcCCCcc
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY---------ALWLMYINSRTPLN 1118 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY---------~Lw~mYINsr~s~d 1118 (1690)
.....+.|-.+|...++..|+++-..++-++++...++.++|.+.|++|+... ..+ +++|.|+-+.
T Consensus 245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q-~~~~Ql~~l~~~El~w~~~~~~---- 319 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQ-SEWKQLHHLCYFELAWCHMFQH---- 319 (468)
T ss_pred cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccch-hhHHhHHHHHHHHHHHHHHHHc----
Confidence 35667999999999999999999999999999999999999999999999533 222 2889999999
Q ss_pred cchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCH-------HHHHHHHHhhcc
Q 000307 1119 HRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNT-------EKAIQRISRLLI 1178 (1690)
Q Consensus 1119 drl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGny-------dKAI~tL~rLEq 1178 (1690)
.|++|...+..+...++-.+ + =..++.+=+|.+.|+. ++|..-+.++..
T Consensus 320 ----~w~~A~~~f~~L~~~s~WSk-----a--~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 320 ----DWEEAAEYFLRLLKESKWSK-----A--FYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred ----hHHHHHHHHHHHHhccccHH-----H--HHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99999999999977552222 2 2445667788888888 777765555544
No 206
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=87.29 E-value=45 Score=43.03 Aligned_cols=85 Identities=19% Similarity=0.219 Sum_probs=70.5
Q ss_pred chHHHHHHHHHHHHhCCCcchh-HHHHHHHhhccCCCccHHHHHHHHHh--CCCCCchhHHHHHHHHHHHHhcCChhHHH
Q 000307 1296 GLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIK--WPKGVPGIQCIWNQYVEYALQNGRHDFAA 1372 (1690)
Q Consensus 1296 dse~al~LfdklLe~~P~d~eL-~L~AayL~~k~m~e~Ai~vfe~aL~~--~PkNa~g~qcaW~QLiq~Al~~e~~d~ai 1372 (1690)
|.+-|...|+.=|+.++.+.+. .-+..||.--+-..-+..+||.++.. .|+... -+|.-.|.+--.=|+...++
T Consensus 416 D~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~---~Iw~r~l~yES~vGdL~si~ 492 (656)
T KOG1914|consen 416 DKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSK---EIWDRMLEYESNVGDLNSIL 492 (656)
T ss_pred ChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhH---HHHHHHHHHHHhcccHHHHH
Confidence 5666677899999999999999 77788887777455777999999988 555543 49999999999999999999
Q ss_pred HHHHHHHHHHh
Q 000307 1373 ELMDRWFHSVW 1383 (1690)
Q Consensus 1373 ~L~~~ff~gia 1383 (1690)
++-++.|..+-
T Consensus 493 ~lekR~~~af~ 503 (656)
T KOG1914|consen 493 KLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHhcc
Confidence 99999877654
No 207
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=87.28 E-value=1.6 Score=54.69 Aligned_cols=81 Identities=15% Similarity=0.212 Sum_probs=63.7
Q ss_pred hhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC-CCCchHHHHHHHHHhcCCCCHHHH
Q 000307 1029 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSN-TNSVGKDDMFSYSVKHNEGSYALW 1107 (1690)
Q Consensus 1029 ~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~-~~~~ea~emfekAVelaP~NY~Lw 1107 (1690)
.|..+|+.++- .+.+-+. +..-=.+|..||..+|++|.+|..-+..-+.. .+.+-+.++|.++.+.+|++-.||
T Consensus 103 ~D~~lW~~yi~--f~kk~~~---~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw 177 (568)
T KOG2396|consen 103 GDVKLWLSYIA--FCKKKKT---YGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLW 177 (568)
T ss_pred CCHHHHHHHHH--HHHHhcc---hhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHH
Confidence 48889987642 2222222 34445678999999999999999988765554 448889999999999999999999
Q ss_pred HHHHhcC
Q 000307 1108 LMYINSR 1114 (1690)
Q Consensus 1108 ~mYINsr 1114 (1690)
--|.+.+
T Consensus 178 ~eyfrmE 184 (568)
T KOG2396|consen 178 KEYFRME 184 (568)
T ss_pred HHHHHHH
Confidence 9999988
No 208
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.26 E-value=2.3 Score=51.16 Aligned_cols=130 Identities=14% Similarity=0.146 Sum_probs=97.2
Q ss_pred hhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH---
Q 000307 1029 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--- 1105 (1690)
Q Consensus 1029 ~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~--- 1105 (1690)
.|.=|.|.-++.++.|. ..||.++...|+.-|.+....+..+++|-.+.+.+.+.++|..+.++.|-|-+
T Consensus 256 ~dTfllLskvY~ridQP-------~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiA 328 (478)
T KOG1129|consen 256 PDTFLLLSKVYQRIDQP-------ERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIA 328 (478)
T ss_pred hhHHHHHHHHHHHhccH-------HHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeee
Confidence 35566777778888774 67999999999999999999999999999999999999999999999999988
Q ss_pred -HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhccccc
Q 000307 1106 -LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPAT 1181 (1690)
Q Consensus 1106 -Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al 1181 (1690)
++-.|.=.. .=+-|+.+|-++..-- -.. -++|.-+.=|-.-.+.+|-++..+.|-+.+|+
T Consensus 329 cia~~yfY~~--------~PE~AlryYRRiLqmG-~~s-------peLf~NigLCC~yaqQ~D~~L~sf~RAlstat 389 (478)
T KOG1129|consen 329 CIAVGYFYDN--------NPEMALRYYRRILQMG-AQS-------PELFCNIGLCCLYAQQIDLVLPSFQRALSTAT 389 (478)
T ss_pred eeeeccccCC--------ChHHHHHHHHHHHHhc-CCC-------hHHHhhHHHHHHhhcchhhhHHHHHHHHhhcc
Confidence 333232233 3377888886653311 111 45566655555556678989998888876555
No 209
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.92 E-value=5 Score=45.60 Aligned_cols=133 Identities=16% Similarity=0.020 Sum_probs=87.7
Q ss_pred HHHHHHhCCCcc--hh-HHHHHHH---hhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHH
Q 000307 1304 LEKYIKLYPSCL--EL-VLMKARL---QKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1377 (1690)
Q Consensus 1304 fdklLe~~P~d~--eL-~L~AayL---~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ 1377 (1690)
-.+|-+.++.+- +- ..|..-+ +.++ + +.....++...-.|++ .|..-+=++++.-.++.+++|+|+..++.
T Consensus 38 GW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~-~-~~~~~~ekf~~~n~~t-~Ya~laaL~lAk~~ve~~~~d~A~aqL~~ 114 (207)
T COG2976 38 GWRYWQSHQVEQAQEASAQYQNAIKAVQAKK-P-KSIAAAEKFVQANGKT-IYAVLAALELAKAEVEANNLDKAEAQLKQ 114 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-c-hhHHHHHHHHhhcccc-HHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 356666666663 11 3333332 2333 3 4445555555544444 35666778999999999999999999985
Q ss_pred --------HHHH-----Hhhhcc---cccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcC
Q 000307 1378 --------WFHS-----VWKVQY---SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQND 1441 (1690)
Q Consensus 1378 --------ff~g-----ia~~Q~---~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~ 1441 (1690)
=+.+ ++.+|. ..|+|+.++..... ..+++ .++-+-||+|-. +|+
T Consensus 115 ~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~-------~~w~~-----------~~~elrGDill~--kg~ 174 (207)
T COG2976 115 ALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE-------ESWAA-----------IVAELRGDILLA--KGD 174 (207)
T ss_pred HHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc-------ccHHH-----------HHHHHhhhHHHH--cCc
Confidence 2333 445543 89999999972111 11222 234678999999 999
Q ss_pred hHHHHHHHHHHHhhccCC
Q 000307 1442 WNEARLAIDAALKAAASE 1459 (1690)
Q Consensus 1442 ~~EAf~AYDkALk~np~N 1459 (1690)
.+||+.+|++||...+++
T Consensus 175 k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 175 KQEARAAYEKALESDASP 192 (207)
T ss_pred hHHHHHHHHHHHHccCCh
Confidence 999999999999886544
No 210
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=86.36 E-value=16 Score=45.81 Aligned_cols=203 Identities=16% Similarity=0.197 Sum_probs=124.7
Q ss_pred cchhhhhhHHHHHHHHHHHHHhhcCCcchhhh--hcccchhHHHH-HHHHH-HHH----hcchHHHHHHHHHHHHhCCCc
Q 000307 1243 LEDDEKQRAIKLIEMAVNSVELYSNGESLEKE--TNLRSAHCFAV-NHIWC-MAV----LNGLECSMNLLEKYIKLYPSC 1314 (1690)
Q Consensus 1243 vlkdEPdnalAL~smA~dYY~~~~ndEsla~~--~n~k~d~~tKL-N~IRq-~I~----lEdse~al~LfdklLe~~P~d 1314 (1690)
-.+++|.|..-.|.+ +.||.. +++.+.. ++..+..-|+. .+.+. ++. ..|+..+-.||.+-|+--=.
T Consensus 34 rIkdNPtnI~S~fqL-iq~~~t---q~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~- 108 (660)
T COG5107 34 RIKDNPTNILSYFQL-IQYLET---QESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN- 108 (660)
T ss_pred HhhcCchhHHHHHHH-HHHHhh---hhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-
Confidence 357899999999999 799986 4444333 24444444444 33333 332 34999999999998875543
Q ss_pred chh-HHHHHHHhhccCCC---ccH----HHHHHHHH---hCCCCCchhHHHHHHHHHHHH---------hcCChhHHHHH
Q 000307 1315 LEL-VLMKARLQKHDFGD---LSS----VGFEEALI---KWPKGVPGIQCIWNQYVEYAL---------QNGRHDFAAEL 1374 (1690)
Q Consensus 1315 ~eL-~L~AayL~~k~m~e---~Ai----~vfe~aL~---~~PkNa~g~qcaW~QLiq~Al---------~~e~~d~ai~L 1374 (1690)
++| +||-.|++..+ +. .+. .+|+-++. .+|+-.+ +|..|+.+.= +++++|.+.++
T Consensus 109 ldLW~lYl~YIRr~n-~~~tGq~r~~i~~ayefv~~~~~~e~~s~~----~W~ey~~fle~~~~~~kwEeQqrid~iR~~ 183 (660)
T COG5107 109 LDLWMLYLEYIRRVN-NLITGQKRFKIYEAYEFVLGCAIFEPQSEN----YWDEYGLFLEYIEELGKWEEQQRIDKIRNG 183 (660)
T ss_pred HhHHHHHHHHHHhhC-cccccchhhhhHHHHHHHHhcccccccccc----hHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 888 99999999887 22 222 56666665 7899999 9999887542 23344555444
Q ss_pred HHH--------------------------------------HHHHHhhhcccccccchhhcccCC---CCCCCCC--CCC
Q 000307 1375 MDR--------------------------------------WFHSVWKVQYSQVEISDPLVADMS---HSSPEST--STS 1411 (1690)
Q Consensus 1375 ~~~--------------------------------------ff~gia~~Q~~~deALD~lr~g~s---~i~~es~--s~~ 1411 (1690)
-.+ |..+.+.+|. -..+.+ |.+ ++..-.. -+-
T Consensus 184 Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe----~~nlt~-Gl~v~~~~~~Rt~nK~~r 258 (660)
T COG5107 184 YMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQE----IQNLTR-GLSVKNPINLRTANKAAR 258 (660)
T ss_pred HHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHH----HHHHhc-cccccCchhhhhhccccc
Confidence 333 2223333332 222222 211 1111111 111
Q ss_pred CcccccccccchhhhhHHHHHHHHHh-----hhcChHHHHH--HHHHHHhhccCCcHHHHHHHHHHHHhc
Q 000307 1412 DPEFSVSNRNQMDVMFGYLNLSLHRL-----LQNDWNEARL--AIDAALKAAASEHFKHCVREHAMLLLI 1474 (1690)
Q Consensus 1412 vSDfy~~~~~Q~d~~fa~LGD~Lyq~-----Lqg~~~EAf~--AYDkALk~np~N~~i~cLNNYAYFLSl 1474 (1690)
.+| . -+||.+=|++ |.++.-+-.. +|+.+|.|.+-- .++|-.|..|++.
T Consensus 259 ~s~-S-----------~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~--~evw~dys~Y~~~ 314 (660)
T COG5107 259 TSD-S-----------NWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYA--EEVWFDYSEYLIG 314 (660)
T ss_pred ccc-c-----------hhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHhh
Confidence 233 2 3677777763 5566666554 679999999987 8999999998875
No 211
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=86.21 E-value=2.9 Score=45.25 Aligned_cols=67 Identities=13% Similarity=0.068 Sum_probs=58.1
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH--------HHHHHHhcC
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--------LWLMYINSR 1114 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~--------Lw~mYINsr 1114 (1690)
-.|++|-|+.+|.++|+.-|..+.+|-.-++-|--.+.++++++-+.+|++++-+--. -+.+|--++
T Consensus 55 E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred hccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 4688999999999999999999999999999999999999999999999999955422 455555555
No 212
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=85.63 E-value=6.1 Score=40.52 Aligned_cols=99 Identities=15% Similarity=0.233 Sum_probs=66.2
Q ss_pred hhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHHHHHHhcCCCcccchHH
Q 000307 1050 EGMKKALSLLSRALEADPTS------EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDA 1123 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPtS------AeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw~mYINsr~s~ddrl~a 1123 (1690)
+.-..++..|.+++.+-... ..-|..-..- .-..++..|++ .++..|+..+ .
T Consensus 20 ~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~--------~l~~~~~~~~~------~l~~~~~~~~--------~ 77 (146)
T PF03704_consen 20 GDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERE--------RLRELYLDALE------RLAEALLEAG--------D 77 (146)
T ss_dssp T-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHH--------HHHHHHHHHHH------HHHHHHHHTT---------
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHH--------HHHHHHHHHHH------HHHHHHHhcc--------C
Confidence 34577778888888776432 1233333222 11222332222 2567788888 9
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1124 YDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1124 YdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
|++|+..+..+...+ |-. .++...++.+|..+|++..|+..+.++..
T Consensus 78 ~~~a~~~~~~~l~~d-P~~-------E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 78 YEEALRLLQRALALD-PYD-------EEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHHS-TT--------HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCC-------HHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999999999888 887 89999999999999999999999988864
No 213
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.52 E-value=3 Score=47.72 Aligned_cols=85 Identities=19% Similarity=0.157 Sum_probs=69.6
Q ss_pred chhhHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH-----HHHHHHhcCCCc
Q 000307 1048 KLEGMKKALSLLSRALEADPTSE-----ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-----LWLMYINSRTPL 1117 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSA-----eaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~-----Lw~mYINsr~s~ 1117 (1690)
+-|.|..|..-|+.||++=|..+ ++|..-+-.+.+++..+.+.+-|.+|++++| .|. -+-.|-+..
T Consensus 107 ~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-ty~kAl~RRAeayek~e--- 182 (271)
T KOG4234|consen 107 KNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-TYEKALERRAEAYEKME--- 182 (271)
T ss_pred hcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-hhHHHHHHHHHHHHhhh---
Confidence 45889999999999999999864 4666667777888889999999999999997 555 366777776
Q ss_pred ccchHHHHHHHHHHHHhhhcCCCCc
Q 000307 1118 NHRLDAYDAALSVLCRCASASDGDE 1142 (1690)
Q Consensus 1118 ddrl~aYdrAI~aLe~las~~~pDr 1142 (1690)
.|+.||+=|-.+.... |.+
T Consensus 183 -----k~eealeDyKki~E~d-Ps~ 201 (271)
T KOG4234|consen 183 -----KYEEALEDYKKILESD-PSR 201 (271)
T ss_pred -----hHHHHHHHHHHHHHhC-cch
Confidence 8999999888777766 665
No 214
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=84.61 E-value=2.3 Score=50.96 Aligned_cols=84 Identities=17% Similarity=0.237 Sum_probs=65.9
Q ss_pred hhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHhCCCCchHHHHHHHHHhcCCCCHHH
Q 000307 1028 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWIT-YLLIFYSNTNSVGKDDMFSYSVKHNEGSYAL 1106 (1690)
Q Consensus 1028 ~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWye-yl~lY~~~~~~~ea~emfekAVelaP~NY~L 1106 (1690)
+.|.-+|..+|--. -+.+-|..--+++..||..+|+++++|.. ...=|.-.++-+.++.||.+|+.++|++-.+
T Consensus 104 f~D~k~w~~y~~Y~-----~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~i 178 (435)
T COG5191 104 FNDPKIWSQYAAYV-----IKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRI 178 (435)
T ss_pred CCCcHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchH
Confidence 35677887765211 12345677778999999999999999988 4555666778888999999999999999999
Q ss_pred HHHHHhcCCC
Q 000307 1107 WLMYINSRTP 1116 (1690)
Q Consensus 1107 w~mYINsr~s 1116 (1690)
|.-|...+..
T Consensus 179 w~eyfr~El~ 188 (435)
T COG5191 179 WIEYFRMELM 188 (435)
T ss_pred HHHHHHHHHH
Confidence 9888887733
No 215
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=84.12 E-value=81 Score=42.43 Aligned_cols=78 Identities=10% Similarity=0.013 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhc----chHHHHHHHHHHHHhCCCcchh-HHHHHHHhhc-cCCCccHHHHHHHHHhCCCCCchhHHHHH
Q 000307 1283 FAVNHIWCMAVLN----GLECSMNLLEKYIKLYPSCLEL-VLMKARLQKH-DFGDLSSVGFEEALIKWPKGVPGIQCIWN 1356 (1690)
Q Consensus 1283 tKLN~IRq~I~lE----dse~al~LfdklLe~~P~d~eL-~L~AayL~~k-~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~ 1356 (1690)
.|..-+..||-.+ +.....-.+.+++..++.+.++ .=|++|+.+. +.+..+..++-.++..+|--.- +|-
T Consensus 310 ~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgd----L~~ 385 (881)
T KOG0128|consen 310 IKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGD----LWK 385 (881)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHH----HHH
Confidence 3445577777644 7788888899999999999999 6678885443 2355666888888888887777 887
Q ss_pred HHHHHHHhc
Q 000307 1357 QYVEYALQN 1365 (1690)
Q Consensus 1357 QLiq~Al~~ 1365 (1690)
+++ .|++-
T Consensus 386 ral-lAleR 393 (881)
T KOG0128|consen 386 RAL-LALER 393 (881)
T ss_pred HHH-HHHHh
Confidence 777 44443
No 216
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.84 E-value=3.6 Score=48.19 Aligned_cols=93 Identities=14% Similarity=0.019 Sum_probs=76.1
Q ss_pred chhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHHHHHHhcCCCcccchHHH
Q 000307 1048 KLEGMKKALSLLSRALEADPT---SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAY 1124 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPt---SAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw~mYINsr~s~ddrl~aY 1124 (1690)
++|+|+.|-..|..-+.-.|+ .+.++|-|+..||.+++.++|-..|..+++-.|++-+.--+++..+ ...+++-+-
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg-~~~~~l~~~ 231 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG-VSLGRLGNT 231 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH-HHHHHhcCH
Confidence 457899999999999999999 5799999999999999999999999999999999988322222222 111233388
Q ss_pred HHHHHHHHHhhhcCCCCc
Q 000307 1125 DAALSVLCRCASASDGDE 1142 (1690)
Q Consensus 1125 drAI~aLe~las~~~pDr 1142 (1690)
++|...|.+..+.+ |+.
T Consensus 232 d~A~atl~qv~k~Y-P~t 248 (262)
T COG1729 232 DEACATLQQVIKRY-PGT 248 (262)
T ss_pred HHHHHHHHHHHHHC-CCC
Confidence 99999999999999 774
No 217
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=83.34 E-value=1.9 Score=32.72 Aligned_cols=29 Identities=34% Similarity=0.584 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000307 1051 GMKKALSLLSRALEADPTSEILWITYLLI 1079 (1690)
Q Consensus 1051 ~yDAALdLLsrALEINPtSAeaWyeyl~l 1079 (1690)
..+.|-.+|.+++...|.++.+|..|+.+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 46778888999999999999999988877
No 218
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=82.36 E-value=72 Score=37.78 Aligned_cols=190 Identities=16% Similarity=0.106 Sum_probs=114.6
Q ss_pred HhcCCCCHH--HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHH
Q 000307 1097 VKHNEGSYA--LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRIS 1174 (1690)
Q Consensus 1097 VelaP~NY~--Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~ 1174 (1690)
|...|.+-+ -++-=++.+ .|++|+.-|+.+-+.+ |- |.+.-.+++.+++-+-..|+|+.|+..++
T Consensus 29 ~~~~p~~~LY~~g~~~L~~g--------n~~~A~~~fe~l~~~~-p~----s~~~~qa~l~l~yA~Yk~~~y~~A~~~~d 95 (254)
T COG4105 29 VYNLPASELYNEGLTELQKG--------NYEEAIKYFEALDSRH-PF----SPYSEQAQLDLAYAYYKNGEYDLALAYID 95 (254)
T ss_pred ccCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHcC-CC----CcccHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 344444433 556667888 9999999999999887 33 23447889999999999999999999999
Q ss_pred hhcccccCCCCcccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHH-H
Q 000307 1175 RLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAI-K 1253 (1690)
Q Consensus 1175 rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnal-A 1253 (1690)
|... +-+.++. + +...||.- +. .-+.|+|+. -||.-+. |
T Consensus 96 rFi~--lyP~~~n-~---dY~~Ylkg------------Ls-----------------~~~~i~~~~-----rDq~~~~~A 135 (254)
T COG4105 96 RFIR--LYPTHPN-A---DYAYYLKG------------LS-----------------YFFQIDDVT-----RDQSAARAA 135 (254)
T ss_pred HHHH--hCCCCCC-h---hHHHHHHH------------HH-----------------HhccCCccc-----cCHHHHHHH
Confidence 9886 5556652 1 22233211 11 122232222 1222211 1
Q ss_pred HHHHHHHHHHhhcCCcchhhhhcccchhHHHHHH-----------H-HHHHHhcchHHHHHHHHHHHHhCCCcchh----
Q 000307 1254 LIEMAVNSVELYSNGESLEKETNLRSAHCFAVNH-----------I-WCMAVLNGLECSMNLLEKYIKLYPSCLEL---- 1317 (1690)
Q Consensus 1254 L~smA~dYY~~~~ndEsla~~~n~k~d~~tKLN~-----------I-Rq~I~lEdse~al~LfdklLe~~P~d~eL---- 1317 (1690)
..++ -+....|-|.+= . .+...+|-. | |.|..-.-...|++-|+.+++.||.-...
T Consensus 136 ~~~f-~~~i~ryPnS~Y--a-----~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL 207 (254)
T COG4105 136 FAAF-KELVQRYPNSRY--A-----PDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREAL 207 (254)
T ss_pred HHHH-HHHHHHCCCCcc--h-----hhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHH
Confidence 1122 123332222111 1 112222222 2 22222347899999999999999988776
Q ss_pred -HHHHHHHhhccCCCccHHHHHHHHHhCCCCCc
Q 000307 1318 -VLMKARLQKHDFGDLSSVGFEEALIKWPKGVP 1349 (1690)
Q Consensus 1318 -~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~ 1349 (1690)
.|.-+|+. .++.++|-.. ..+|..++-+.+
T Consensus 208 ~~l~eaY~~-lgl~~~a~~~-~~vl~~N~p~s~ 238 (254)
T COG4105 208 ARLEEAYYA-LGLTDEAKKT-AKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHH-hCChHHHHHH-HHHHHhcCCCCc
Confidence 56677777 4446666665 788888887777
No 219
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=82.30 E-value=1.8e+02 Score=39.77 Aligned_cols=55 Identities=16% Similarity=0.169 Sum_probs=40.3
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCC
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1103 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~N 1103 (1690)
..+++|.|+.++.|++.-+|. .+..++|-..|.+-+.-.+.+..--+-.+..|.+
T Consensus 89 d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~ 143 (932)
T KOG2053|consen 89 DLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKR 143 (932)
T ss_pred HHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 457899999999999999999 9999999888877666544443333333444444
No 220
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=82.17 E-value=1.2 Score=53.55 Aligned_cols=57 Identities=14% Similarity=0.215 Sum_probs=53.4
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1105 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~ 1105 (1690)
+-|.|+.|++-|++++..+|.+++.+..-+..|.+.+.-..|..-|..||.++ +.|.
T Consensus 109 KQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~ 165 (536)
T KOG4648|consen 109 KQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYV 165 (536)
T ss_pred hccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHH
Confidence 46899999999999999999999999999999999999999999999999999 6666
No 221
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=81.83 E-value=18 Score=44.46 Aligned_cols=186 Identities=10% Similarity=0.035 Sum_probs=111.4
Q ss_pred cchhHHHHHHHHHHHHhcchHHHHHHHHHHHHh----CCCcchh-HHHHHHHhh---ccCCCccHHHHHHHHHhCCCCCc
Q 000307 1278 RSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKL----YPSCLEL-VLMKARLQK---HDFGDLSSVGFEEALIKWPKGVP 1349 (1690)
Q Consensus 1278 k~d~~tKLN~IRq~I~lEdse~al~LfdklLe~----~P~d~eL-~L~AayL~~---k~m~e~Ai~vfe~aL~~~PkNa~ 1349 (1690)
-+..+.-+|+|..|-...|.+..++|.+.+=.. .+....+ .+||--|-. .+-.+.|+.+++.+|.......+
T Consensus 138 ~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~ 217 (374)
T PF13281_consen 138 LLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP 217 (374)
T ss_pred hcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh
Confidence 344566678777777777999999999987666 4555556 778877777 33345788999998888877777
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHH--HHHHHhhhcccccccchhhcccCCCCCC-C------------------CC
Q 000307 1350 GIQCIWNQYVEYALQNGRHDFAAELMDR--WFHSVWKVQYSQVEISDPLVADMSHSSP-E------------------ST 1408 (1690)
Q Consensus 1350 g~qcaW~QLiq~Al~~e~~d~ai~L~~~--ff~gia~~Q~~~deALD~lr~g~s~i~~-e------------------s~ 1408 (1690)
=.-|++=..-...|...+......+.+. ||.--++.+.....++++.-=....... + ..
T Consensus 218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 7778877777777766444333333333 6666666665333333322111000000 0 00
Q ss_pred CCCCcccccccccchhhhhHHHHH-HHHHhhhcChHHHHHHHHHHHhhccCCcH-HHHHHHHHHHHhc
Q 000307 1409 STSDPEFSVSNRNQMDVMFGYLNL-SLHRLLQNDWNEARLAIDAALKAAASEHF-KHCVREHAMLLLI 1474 (1690)
Q Consensus 1409 s~~vSDfy~~~~~Q~d~~fa~LGD-~Lyq~Lqg~~~EAf~AYDkALk~np~N~~-i~cLNNYAYFLSl 1474 (1690)
......-| |..+= .=...|.|+.++|..|++++++.+|+.++ .-++.|.--|..+
T Consensus 298 ~~~~~~dY-----------Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~ni~Li~~~ 354 (374)
T PF13281_consen 298 SLEKMQDY-----------WDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLENIKLIRHF 354 (374)
T ss_pred cccccccH-----------HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHH
Confidence 00011112 22221 22345689999999999999999997643 3344444444443
No 222
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=81.43 E-value=3.5 Score=51.36 Aligned_cols=102 Identities=19% Similarity=0.194 Sum_probs=76.7
Q ss_pred chHHHHHHHHHHHHhCCCcchhHHHHHH-HhhccCCCccHHHHHHHHHhCCCCCc-hhHHHHHHHHHHHHhcCChhHHHH
Q 000307 1296 GLECSMNLLEKYIKLYPSCLELVLMKAR-LQKHDFGDLSSVGFEEALIKWPKGVP-GIQCIWNQYVEYALQNGRHDFAAE 1373 (1690)
Q Consensus 1296 dse~al~LfdklLe~~P~d~eL~L~Aay-L~~k~m~e~Ai~vfe~aL~~~PkNa~-g~qcaW~QLiq~Al~~e~~d~ai~ 1373 (1690)
+.+.+..+++.+++.||..+=..+..++ ..+++-.+.|+..|+.++....+=.+ -|.|.|....-+++.. +|++|.+
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~-~w~~A~~ 326 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQH-DWEEAAE 326 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHc-hHHHHHH
Confidence 6788999999999999998877555555 56666678999999998853333333 6899998888777755 9999998
Q ss_pred HHHH-------------HHHHHhhhcc-cc-------cccchhhcc
Q 000307 1374 LMDR-------------WFHSVWKVQY-SQ-------VEISDPLVA 1398 (1690)
Q Consensus 1374 L~~~-------------ff~gia~~Q~-~~-------deALD~lr~ 1398 (1690)
...+ |+.++++.+. +. ++|.+.+++
T Consensus 327 ~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~ 372 (468)
T PF10300_consen 327 YFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRK 372 (468)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHH
Confidence 8877 6777777776 44 555555553
No 223
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=81.09 E-value=0.6 Score=52.77 Aligned_cols=33 Identities=39% Similarity=0.835 Sum_probs=28.7
Q ss_pred ccccCCCCCCC-cceeecccccccCCCCcchhhh
Q 000307 866 YTCNLAIDPLW-PLCMYELRGKCNNDECPWQHVK 898 (1690)
Q Consensus 866 ~t~s~~idp~~-~lC~fel~G~CNd~~C~wQH~~ 898 (1690)
-..|+.+||.. |-|||-|-|+||+..|++-|..
T Consensus 250 cnlsheldprripacryfllgkcnnpncryvhih 283 (377)
T KOG1492|consen 250 CNLSHELDPRRIPACRYFLLGKCNNPNCRYVHIH 283 (377)
T ss_pred CCcccccCccccchhhhhhhccCCCCCceEEEEe
Confidence 34589999975 8999999999999999999864
No 224
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=81.06 E-value=20 Score=48.00 Aligned_cols=114 Identities=14% Similarity=0.138 Sum_probs=94.2
Q ss_pred CchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH-----HHHHHHhcCCCcccch
Q 000307 1047 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-----LWLMYINSRTPLNHRL 1121 (1690)
Q Consensus 1047 n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~-----Lw~mYINsr~s~ddrl 1121 (1690)
-+++++.+||..+.+-|.-.|+++-+...=+....+++...++. -|..|++.-+.+.. |-.+|..++
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~-~~Le~~~~~~~~D~~tLq~l~~~y~d~~------- 91 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEAL-KLLEALYGLKGTDDLTLQFLQNVYRDLG------- 91 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHH-HHHhhhccCCCCchHHHHHHHHHHHHHh-------
Confidence 46789999999999999999999988888888888899999998 56667776666665 778899999
Q ss_pred HHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHH---HHHhhcc
Q 000307 1122 DAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQ---RISRLLI 1178 (1690)
Q Consensus 1122 ~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~---tL~rLEq 1178 (1690)
.+++|..+|++....+ |. .+.++.++-.|.+-++|.++=+ .++++++
T Consensus 92 -~~d~~~~~Ye~~~~~~-P~--------eell~~lFmayvR~~~yk~qQkaa~~LyK~~p 141 (932)
T KOG2053|consen 92 -KLDEAVHLYERANQKY-PS--------EELLYHLFMAYVREKSYKKQQKAALQLYKNFP 141 (932)
T ss_pred -hhhHHHHHHHHHHhhC-Cc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999988887 55 5899999999999999876533 3555554
No 225
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=80.91 E-value=4.4 Score=48.25 Aligned_cols=119 Identities=18% Similarity=0.200 Sum_probs=84.5
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHHHHHHhcCCCcccchHHHHHH
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAA 1127 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw~mYINsr~s~ddrl~aYdrA 1127 (1690)
..|++..|..+|+.+|..+|+++++..-|+..|...+..++++..+...=.-..+.-+.. +..+..|-.+..+-++
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~---l~a~i~ll~qaa~~~~- 221 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHG---LQAQIELLEQAAATPE- 221 (304)
T ss_pred hccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHH---HHHHHHHHHHHhcCCC-
Confidence 458889999999999999999999999999999999999998887765322222222222 1121111111112222
Q ss_pred HHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1128 LSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1128 I~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
+..+++....+ ||. .|.-+.+++.|...|+++.|+..|=.|..
T Consensus 222 ~~~l~~~~aad-Pdd-------~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 222 IQDLQRRLAAD-PDD-------VEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHHhC-CCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23344444555 877 89999999999999999999998888875
No 226
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=80.34 E-value=55 Score=38.04 Aligned_cols=93 Identities=17% Similarity=0.120 Sum_probs=64.1
Q ss_pred hhhhhHHHHHHHHHHHHHhh-cCCcchhhhhcccchhHHHHHHHHHHHH--hc-----chHHHHHHHHHHHHhCCCcchh
Q 000307 1246 DEKQRAIKLIEMAVNSVELY-SNGESLEKETNLRSAHCFAVNHIWCMAV--LN-----GLECSMNLLEKYIKLYPSCLEL 1317 (1690)
Q Consensus 1246 dEPdnalAL~smA~dYY~~~-~ndEsla~~~n~k~d~~tKLN~IRq~I~--lE-----dse~al~LfdklLe~~P~d~eL 1317 (1690)
++++.+...++.|+++++.. ..+. ......++++..+|.++. ++ +.+.|.++.+.+-..+|.-+.+
T Consensus 50 ~~~~~a~~wL~~a~~~l~~~~~~~~------~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~ 123 (278)
T PF08631_consen 50 DKYEEAVKWLQRAYDILEKPGKMDK------LSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEV 123 (278)
T ss_pred CChHHHHHHHHHHHHHHHhhhhccc------cCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHH
Confidence 57888999999999998741 1111 122235678877777775 33 7778899999999999999999
Q ss_pred H-HHHHHHhhccCCCccH-HHHHHHHHhCC
Q 000307 1318 V-LMKARLQKHDFGDLSS-VGFEEALIKWP 1345 (1690)
Q Consensus 1318 ~-L~AayL~~k~m~e~Ai-~vfe~aL~~~P 1345 (1690)
. |+-..+.+ .+..++. .++.+++..-+
T Consensus 124 ~~L~l~il~~-~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 124 FLLKLEILLK-SFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHhc-cCChhHHHHHHHHHHHhcc
Confidence 4 55555555 4355555 77777777655
No 227
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=79.33 E-value=2.7 Score=50.77 Aligned_cols=106 Identities=13% Similarity=0.030 Sum_probs=80.6
Q ss_pred cHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHHHHHHHHHHHhcchHH
Q 000307 1220 PDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLEC 1299 (1690)
Q Consensus 1220 PGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tKLN~IRq~I~lEdse~ 1299 (1690)
-|+-|+.-|+..||+++ |.....-+|.|++....-|+.|.+. =++..+-+|.+.
T Consensus 103 ~GN~yFKQgKy~EAIDC---Ys~~ia~~P~NpV~~~NRA~AYlk~-----------------------K~FA~AE~DC~~ 156 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDC---YSTAIAVYPHNPVYHINRALAYLKQ-----------------------KSFAQAEEDCEA 156 (536)
T ss_pred hhhhhhhccchhHHHHH---hhhhhccCCCCccchhhHHHHHHHH-----------------------HHHHHHHHhHHH
Confidence 47778888899999999 9999999999999999888777764 112233448999
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHH
Q 000307 1300 SMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEY 1361 (1690)
Q Consensus 1300 al~LfdklLe~~P~d~eL~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~ 1361 (1690)
|++|=++|++.|-.-. +||-.. +|..+|..-+|.+|.++|++-. +.-||...
T Consensus 157 AiaLd~~Y~KAYSRR~-----~AR~~L-g~~~EAKkD~E~vL~LEP~~~E----LkK~~a~i 208 (536)
T KOG4648|consen 157 AIALDKLYVKAYSRRM-----QARESL-GNNMEAKKDCETVLALEPKNIE----LKKSLARI 208 (536)
T ss_pred HHHhhHHHHHHHHHHH-----HHHHHH-hhHHHHHHhHHHHHhhCcccHH----HHHHHHHh
Confidence 9999999999875433 233222 2356788889999999999888 77777653
No 228
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=79.06 E-value=5.5 Score=48.26 Aligned_cols=130 Identities=14% Similarity=0.189 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhhhcCCCCcc----hhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHh
Q 000307 1123 AYDAALSVLCRCASASDGDEM----HASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCL 1198 (1690)
Q Consensus 1123 aYdrAI~aLe~las~~~pDr~----~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YL 1198 (1690)
.|.+|-..|...+..+||+.. +...+=.|.|+|+.+.+.++|+++.|-.-|+|-+- .-| ......|..+.
T Consensus 9 ~Y~~~q~~F~~~v~~~Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf-----~~e-~~~~~~F~~~~ 82 (360)
T PF04910_consen 9 AYQEAQEQFYAAVQSHDPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALF-----AFE-RAFHPSFSPFR 82 (360)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHH-HHHHHHhhhhh
Confidence 566666666555444434421 11234589999999999999999999887777543 122 12222343322
Q ss_pred ccCCccchhHHHH-------HHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhh-hHHHHHHHHHHHHHh
Q 000307 1199 TISDKLIFWVCCV-------YLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQ-RAIKLIEMAVNSVEL 1264 (1690)
Q Consensus 1199 t~sDkc~AwLc~i-------Ydl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPd-nalAL~smA~dYY~~ 1264 (1690)
-........|-+. |...||-| ..+.+.||..-|+++ ..=++.-||+ .++.+.-+ +|||..
T Consensus 83 ~~~~~g~~rL~~~~~eNR~fflal~r~i--~~L~~RG~~rTAlE~---~KlLlsLdp~~DP~g~ll~-ID~~AL 150 (360)
T PF04910_consen 83 SNLTSGNCRLDYRRPENRQFFLALFRYI--QSLGRRGCWRTALEW---CKLLLSLDPDEDPLGVLLF-IDYYAL 150 (360)
T ss_pred cccccCccccCCccccchHHHHHHHHHH--HHHHhcCcHHHHHHH---HHHHHhcCCCCCcchhHHH-HHHHHH
Confidence 1111112222222 24444433 356788999999999 8888999999 99998888 899986
No 229
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=77.97 E-value=1.5e+02 Score=37.31 Aligned_cols=250 Identities=17% Similarity=0.081 Sum_probs=149.4
Q ss_pred HHHhccccCchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHh
Q 000307 1039 LLILNQDANKLEGMKKALSLLSRALEA--DPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYIN 1112 (1690)
Q Consensus 1039 l~~Lnq~~n~~g~yDAALdLLsrALEI--NPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYIN 1112 (1690)
+..-...++..|++|.|=.+|.++-|. |++ =.+....+.+-..++.-..+.+-...+.+..|.+-. .-..|+.
T Consensus 121 ~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~-l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~ 199 (400)
T COG3071 121 YLLAAEAAQQRGDEDRANRYLAEAAELAGDDT-LAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIR 199 (400)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhccCCCch-HHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHH
Confidence 333333346789999999999999998 444 334556667777888889999999999999999999 4589999
Q ss_pred cCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHH--------H-HHHHhhcccccCC
Q 000307 1113 SRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKA--------I-QRISRLLIPATGS 1183 (1690)
Q Consensus 1113 sr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKA--------I-~tL~rLEq~Al~G 1183 (1690)
++ +|...+..+..+.+..-- .|.-+.+++=-..-|=.+.+ + .-++.+=. ..-
T Consensus 200 ~g--------~~~~ll~~l~~L~ka~~l---------~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr--~lr 260 (400)
T COG3071 200 LG--------AWQALLAILPKLRKAGLL---------SDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPR--KLR 260 (400)
T ss_pred hc--------cHHHHHHHHHHHHHccCC---------ChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccH--Hhh
Confidence 99 999999999998876411 22222222211111101110 1 01111110 111
Q ss_pred CCcccccHHHHHHHhccCCccch--hHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHH
Q 000307 1184 NDRHSLFLSDILTCLTISDKLIF--WVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNS 1261 (1690)
Q Consensus 1184 ~sE~~lSLsKi~~YLt~sDkc~A--wLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dY 1261 (1690)
.++ .|.++-+.-++..+|..-| |+-..+. . +.+.+.... +..+.-.||.-..+.++.+..-
T Consensus 261 ~~p-~l~~~~a~~li~l~~~~~A~~~i~~~Lk------------~-~~D~~L~~~---~~~l~~~d~~~l~k~~e~~l~~ 323 (400)
T COG3071 261 NDP-ELVVAYAERLIRLGDHDEAQEIIEDALK------------R-QWDPRLCRL---IPRLRPGDPEPLIKAAEKWLKQ 323 (400)
T ss_pred cCh-hHHHHHHHHHHHcCChHHHHHHHHHHHH------------h-ccChhHHHH---HhhcCCCCchHHHHHHHHHHHh
Confidence 223 5565556666666666555 2222221 1 111123344 5555556666666666664211
Q ss_pred HHhhcCCcchhhhhcccchhHHHHHHHHHHHH-hcchHHHHHHHHHHHHhCCCcchh-HHHHHHHhhccCCCccHHHHHH
Q 000307 1262 VELYSNGESLEKETNLRSAHCFAVNHIWCMAV-LNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEE 1339 (1690)
Q Consensus 1262 Y~~~~ndEsla~~~n~k~d~~tKLN~IRq~I~-lEdse~al~LfdklLe~~P~d~eL-~L~AayL~~k~m~e~Ai~vfe~ 1339 (1690)
.- ++ .++=+. +-++.. ...+.+|...|+..++.-|+.-+. +|.-++-+... +..|-.++++
T Consensus 324 h~---~~------------p~L~~t-LG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~-~~~A~~~r~e 386 (400)
T COG3071 324 HP---ED------------PLLLST-LGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGE-PEEAEQVRRE 386 (400)
T ss_pred CC---CC------------hhHHHH-HHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCC-hHHHHHHHHH
Confidence 11 11 122222 333333 447889999999999999999999 55555555555 8888888888
Q ss_pred HHH
Q 000307 1340 ALI 1342 (1690)
Q Consensus 1340 aL~ 1342 (1690)
+|.
T Consensus 387 ~L~ 389 (400)
T COG3071 387 ALL 389 (400)
T ss_pred HHH
Confidence 874
No 230
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=76.98 E-value=2.4e+02 Score=36.65 Aligned_cols=161 Identities=16% Similarity=0.150 Sum_probs=96.0
Q ss_pred CHHHHHHHHHHHH-hCCCCchHHHHHHHHHhcCCC-CHH---------HHHHHHhcCCCcccchHHHHHHHHHHHHhhhc
Q 000307 1069 SEILWITYLLIFY-SNTNSVGKDDMFSYSVKHNEG-SYA---------LWLMYINSRTPLNHRLDAYDAALSVLCRCASA 1137 (1690)
Q Consensus 1069 SAeaWyeyl~lY~-~~~~~~ea~emfekAVelaP~-NY~---------Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~ 1137 (1690)
.+-+.+.|+.+|. .-.+..+|..+++||..+... ++. |+.+|-..+.+. .+...+++|+.++.
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~--a~~~l~~~I~~~~~---- 131 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA--ALKNLDKAIEDSET---- 131 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHHHhc----
Confidence 4567888998887 677899999999999988853 222 667777777333 55555555655533
Q ss_pred CCCCcchhhhhhHHHHHHH-HHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccchhHHHHH---H
Q 000307 1138 SDGDEMHASACILDLFLQM-LQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY---L 1213 (1690)
Q Consensus 1138 ~~pDr~~~Sa~ILDvLL~L-vqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iY---d 1213 (1690)
. . .++| ...|-.+ ++++...+++..|++.|..+..-|. ..+|....-+|..+ +
T Consensus 132 ~---~--~~~w-~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~-----------------~~~d~~~~v~~~l~~~~l 188 (608)
T PF10345_consen 132 Y---G--HSAW-YYAFRLLKIQLALQHKDYNAALENLQSIAQLAN-----------------QRGDPAVFVLASLSEALL 188 (608)
T ss_pred c---C--chhH-HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhh-----------------hcCCHHHHHHHHHHHHHH
Confidence 1 1 1222 2333333 6666666999999998877775221 12444444333333 4
Q ss_pred HhhccccHHHHhhccchhhhhc-CCCCCcccchhhhhhHHHHHHHHHHHHH
Q 000307 1214 VIYRKLPDAVLQLLECEKELFA-IDWPPVQLEDDEKQRAIKLIEMAVNSVE 1263 (1690)
Q Consensus 1214 l~YrvLPGd~y~qne~~KEAf~-I~W~yvqvlkdEPdnalAL~smA~dYY~ 1263 (1690)
..++.-|+++....+.-..... +.|... ..+....+++-+ ++.+-
T Consensus 189 ~l~~~~~~d~~~~l~~~~~~~~~~q~~~~----~~~~qL~~~~ll-l~l~~ 234 (608)
T PF10345_consen 189 HLRRGSPDDVLELLQRAIAQARSLQLDPS----VHIPQLKALFLL-LDLCC 234 (608)
T ss_pred HhcCCCchhHHHHHHHHHHHHhhcccCCC----CCcHHHHHHHHH-HHHHH
Confidence 4455558888877765433333 323222 255566666666 56443
No 231
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=76.46 E-value=1.6e+02 Score=34.37 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHH
Q 000307 1350 GIQCIWNQYVEYALQNGRHDFAAELMD 1376 (1690)
Q Consensus 1350 g~qcaW~QLiq~Al~~e~~d~ai~L~~ 1376 (1690)
-|..+|++.-. ....++|+.|+..|+
T Consensus 245 ~~~LLW~~~~~-~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 245 IHTLLWNKGKK-HYKAKNYDEAIEWYE 270 (278)
T ss_pred HHHHHHHHHHH-HHhhcCHHHHHHHHH
Confidence 56778988544 556779999998875
No 232
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=76.04 E-value=11 Score=46.92 Aligned_cols=218 Identities=17% Similarity=0.115 Sum_probs=133.2
Q ss_pred hhhHHHHHHHHHHHHHh----CC--CCHHHHHHHHHHHHhCCC-------------CchHHHHHHHHHhcCCCCHH----
Q 000307 1049 LEGMKKALSLLSRALEA----DP--TSEILWITYLLIFYSNTN-------------SVGKDDMFSYSVKHNEGSYA---- 1105 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEI----NP--tSAeaWyeyl~lY~~~~~-------------~~ea~emfekAVelaP~NY~---- 1105 (1690)
.|.||.|+---.|-|.+ +- .-+-++|.++.+|..+++ ..++.+.|+.||++.-.|-.
T Consensus 108 ~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~ 187 (639)
T KOG1130|consen 108 KGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEK 187 (639)
T ss_pred hcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667666443333332 22 246789999999999887 45678999999998776665
Q ss_pred -------------HHHHHHhcCCCcccchHHHHHHHHHHHH---hhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHH
Q 000307 1106 -------------LWLMYINSRTPLNHRLDAYDAALSVLCR---CASASDGDEMHASACILDLFLQMLQCFCMSGNTEKA 1169 (1690)
Q Consensus 1106 -------------Lw~mYINsr~s~ddrl~aYdrAI~aLe~---las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKA 1169 (1690)
|+.+|.=.+ .|+.||.+-+. ++..+ +|+ |.---..--+..+|.+-|+++-|
T Consensus 188 lgDr~aqGRa~GnLGNTyYlLG--------df~~ai~~H~~RL~ia~ef-GDr----AaeRRA~sNlgN~hiflg~fe~A 254 (639)
T KOG1130|consen 188 LGDRLAQGRAYGNLGNTYYLLG--------DFDQAIHFHKLRLEIAQEF-GDR----AAERRAHSNLGNCHIFLGNFELA 254 (639)
T ss_pred hhhHHhhcchhcccCceeeeec--------cHHHHHHHHHHHHHHHHHh-hhH----HHHHHhhcccchhhhhhcccHhH
Confidence 555565566 89999988754 45566 665 22223455678899999999999
Q ss_pred HHHHHhhcccccCCCCcccccHHHHHHHhccCCccch-----hHHHHH--HHhhccccHHHHhhccchhhhhcCCCCCcc
Q 000307 1170 IQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIF-----WVCCVY--LVIYRKLPDAVLQLLECEKELFAIDWPPVQ 1242 (1690)
Q Consensus 1170 I~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~A-----wLc~iY--dl~YrvLPGd~y~qne~~KEAf~I~W~yvq 1242 (1690)
|+-+.+-.. +-..+++|..- .|...| +-+|++-.. |.+ .-++| .+
T Consensus 255 ~ehYK~tl~-----------------LAielg~r~vEAQscYSLgNtytll~e~~kAI~--Yh~-----rHLaI----Aq 306 (639)
T KOG1130|consen 255 IEHYKLTLN-----------------LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAIT--YHQ-----RHLAI----AQ 306 (639)
T ss_pred HHHHHHHHH-----------------HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHH--HHH-----HHHHH----HH
Confidence 986644332 22344555443 333333 222222111 111 11233 22
Q ss_pred cchhhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHHHHHHHHHHH-hc---chHHHHHHHHHHHHhCCCcchh
Q 000307 1243 LEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAV-LN---GLECSMNLLEKYIKLYPSCLEL 1317 (1690)
Q Consensus 1243 vlkdEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tKLN~IRq~I~-lE---dse~al~LfdklLe~~P~d~eL 1317 (1690)
-+.+--..+.+-.|+| ..|+. .+. .+-+-.|..-|++.-.. .+ .++...+|.+.+|.+-..+..+
T Consensus 307 eL~DriGe~RacwSLg-na~~a-lg~--------h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds~~ 375 (639)
T KOG1130|consen 307 ELEDRIGELRACWSLG-NAFNA-LGE--------HRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDSLV 375 (639)
T ss_pred HHHHhhhhHHHHHHHH-HHHHh-hhh--------HHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcccC
Confidence 2344445677777886 66665 443 33345566666665555 33 5678888999999888877744
No 233
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=76.04 E-value=9.3 Score=49.75 Aligned_cols=185 Identities=19% Similarity=0.176 Sum_probs=114.3
Q ss_pred HHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcc--cccccchhhcccCCCCCCCCCCCCC
Q 000307 1335 VGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQY--SQVEISDPLVADMSHSSPESTSTSD 1412 (1690)
Q Consensus 1335 ~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ff~gia~~Q~--~~deALD~lr~g~s~i~~es~s~~v 1412 (1690)
-+|.+.++.-|+-.. .|..+.+.|++.++. -|.++.|..|..+-+ .-.+.+++-+.....+ . ..-
T Consensus 464 ~afles~~~~~da~a----mw~~laelale~~nl----~iaercfaai~dvak~r~lhd~~eiadeas~~~--g---gdg 530 (1636)
T KOG3616|consen 464 TAFLESLEMGPDAEA----MWIRLAELALEAGNL----FIAERCFAAIGDVAKARFLHDILEIADEASIEI--G---GDG 530 (1636)
T ss_pred HHHHHhhccCccHHH----HHHHHHHHHHHhccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--C---CCC
Confidence 457778888888888 999999999999875 456677888877776 3444444444332222 1 112
Q ss_pred cccccccccchhhhhHHHHH-------HHHHhhhcChHHHHHHHHHHHhhc------c-C--CcHHHHHHHHHHHHhcCC
Q 000307 1413 PEFSVSNRNQMDVMFGYLNL-------SLHRLLQNDWNEARLAIDAALKAA------A-S--EHFKHCVREHAMLLLINE 1476 (1690)
Q Consensus 1413 SDfy~~~~~Q~d~~fa~LGD-------~Lyq~Lqg~~~EAf~AYDkALk~n------p-~--N~~i~cLNNYAYFLSle~ 1476 (1690)
.||| |+-+|.++|+- +..+ ++..+||.-.|..--+|. - . ..+...-+-|.-.|+-.+
T Consensus 531 t~fy-----kvra~lail~kkfk~ae~ifle--qn~te~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~ 603 (1636)
T KOG3616|consen 531 TDFY-----KVRAMLAILEKKFKEAEMIFLE--QNATEEAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTG 603 (1636)
T ss_pred chHH-----HHHHHHHHHHhhhhHHHHHHHh--cccHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcC
Confidence 6999 89999999987 5666 888999998875433332 1 1 224566677888888777
Q ss_pred CCCCccc---chhhhHHHHHHHHhh------hcccccccc-cchhhhccccchhhHHHHhhhcCCC-----CCChh---h
Q 000307 1477 SEPKEGA---PISWQLKLLNSYLDR------ARSLPYLKL-LPRQFINNIERPRLQQLIDNLLSPV-----SSDFS---L 1538 (1690)
Q Consensus 1477 ~dL~KAE---qMS~~~KtVsTYLDT------AWILf~~~~-lARiYI~~i~k~rv~~liDqaL~~~-----S~dsS---~ 1538 (1690)
.+-+.|| .-...+-.|.-||.. +....-.+. ++-.=| |+++-+.+++.. .+-+. +
T Consensus 604 qd~ka~elk~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~i-------l~~ia~alik~elydkagdlfeki~d 676 (1636)
T KOG3616|consen 604 QDEKAAELKESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEI-------LEHIAAALIKGELYDKAGDLFEKIHD 676 (1636)
T ss_pred chhhhhhhccccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHH-------HHHHHHHHHhhHHHHhhhhHHHHhhC
Confidence 6555443 222334555667764 122222222 333333 556556555551 11122 6
Q ss_pred HHHHHhhc
Q 000307 1539 VNLVLEVC 1546 (1690)
Q Consensus 1539 vNkALE~W 1546 (1690)
.+||||++
T Consensus 677 ~dkale~f 684 (1636)
T KOG3616|consen 677 FDKALECF 684 (1636)
T ss_pred HHHHHHHH
Confidence 78899977
No 234
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=75.97 E-value=27 Score=39.94 Aligned_cols=128 Identities=19% Similarity=0.211 Sum_probs=81.7
Q ss_pred hhhhchhhhHHHHHHHHHH--hccccC------chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHH
Q 000307 1023 KLKQVELSNEQCVEMALLI--LNQDAN------KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFS 1094 (1690)
Q Consensus 1023 ~Le~~~~d~qlWl~lAl~~--Lnq~~n------~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfe 1094 (1690)
++-....+-..||++|-.+ .-+++- +...--+.+..|..-+...++=-.+||+-.+. ++..|+.-|.
T Consensus 56 ~~l~~le~Y~kCielAa~Iq~i~~~e~k~~R~~a~~~s~~~l~~L~~~tk~S~dP~llYy~Wsr~-----~d~~A~~~fL 130 (203)
T PF11207_consen 56 QLLEALEKYSKCIELAAQIQHIKQKERKTDRFRALLHSYQELERLQEETKNSQDPYLLYYHWSRF-----GDQEALRRFL 130 (203)
T ss_pred HHHHHHHHHHHHHHHHhcCeeechHhHHHHHHHHHHHHHHHHHHHHHHHccCCCccHHHHHhhcc-----CcHHHHHHHH
Confidence 3344445668999999653 233332 23333445666666666666655666666655 5666776666
Q ss_pred HHHhcCCCC-----HHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCC-cchhhhhhHHHHHHHHHHHhhhcCHHH
Q 000307 1095 YSVKHNEGS-----YALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD-EMHASACILDLFLQMLQCFCMSGNTEK 1168 (1690)
Q Consensus 1095 kAVelaP~N-----Y~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pD-r~~~Sa~ILDvLL~LvqLY~qSGnydK 1168 (1690)
.+-.-..=+ |.||.+|++ + +=++|+++|-+.-+..+++ . .=.|+|..|+-+|...|++++
T Consensus 131 ~~E~~~~l~t~elq~aLAtyY~k-r--------D~~Kt~~ll~~~L~l~~~~~~-----~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 131 QLEGTPELETAELQYALATYYTK-R--------DPEKTIQLLLRALELSNPDDN-----FNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHc-c--------CHHHHHHHHHHHHHhcCCCCC-----CCHHHHHHHHHHHHHhcchhh
Confidence 553222111 229999995 4 4788898887766655344 1 117999999999999999998
Q ss_pred H
Q 000307 1169 A 1169 (1690)
Q Consensus 1169 A 1169 (1690)
|
T Consensus 197 A 197 (203)
T PF11207_consen 197 A 197 (203)
T ss_pred h
Confidence 7
No 235
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=75.80 E-value=14 Score=41.64 Aligned_cols=110 Identities=11% Similarity=0.069 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC---CCCchH-------HHHHHHHHhcCCCCHH----HHHHHHhcCC--
Q 000307 1052 MKKALSLLSRALEADPTSEILWITYLLIFYSN---TNSVGK-------DDMFSYSVKHNEGSYA----LWLMYINSRT-- 1115 (1690)
Q Consensus 1052 yDAALdLLsrALEINPtSAeaWyeyl~lY~~~---~~~~ea-------~emfekAVelaP~NY~----Lw~mYINsr~-- 1115 (1690)
++.|........+.||.++++++..+.....+ ++..++ ..-|+.|+.++|+... |+..|.....
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 57888899999999999999887665554443 332333 3446778899987655 5566666541
Q ss_pred -CcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHH
Q 000307 1116 -PLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAI 1170 (1690)
Q Consensus 1116 -s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI 1170 (1690)
...+...-|++|...|....... |+. +++..-+++....=.++.=|
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~-P~n--------e~Y~ksLe~~~kap~lh~e~ 133 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDED-PNN--------ELYRKSLEMAAKAPELHMEI 133 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH--TT---------HHHHHHHHHHHTHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcC-CCc--------HHHHHHHHHHHhhHHHHHHH
Confidence 22234467999999998777776 775 56666666654444444333
No 236
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.71 E-value=7.7 Score=47.15 Aligned_cols=93 Identities=19% Similarity=0.064 Sum_probs=59.9
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC-CchHHHHHHH------HHhcCCCCHH-HHHHHHhcCCCccc
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN-SVGKDDMFSY------SVKHNEGSYA-LWLMYINSRTPLNH 1119 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~-~~ea~emfek------AVelaP~NY~-Lw~mYINsr~s~dd 1119 (1690)
-.|-|+.|-..-.+||+|||.+.=+---.+++.--.+. ++++.-|+++ --=++..||| .+.+||...
T Consensus 187 E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~a----- 261 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGA----- 261 (491)
T ss_pred HhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhccc-----
Confidence 34779999999999999999976544444443222222 3344444432 2234557899 889999999
Q ss_pred chHHHHHHHHHHHHhhhcCCCCcchhhhhh
Q 000307 1120 RLDAYDAALSVLCRCASASDGDEMHASACI 1149 (1690)
Q Consensus 1120 rl~aYdrAI~aLe~las~~~pDr~~~Sa~I 1149 (1690)
.|++|+++|.+..-.. -.+.++++..
T Consensus 262 ---eye~aleIyD~ei~k~-l~k~Da~a~~ 287 (491)
T KOG2610|consen 262 ---EYEKALEIYDREIWKR-LEKDDAVARD 287 (491)
T ss_pred ---chhHHHHHHHHHHHHH-hhccchhhhh
Confidence 9999999997654432 2233355543
No 237
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=75.65 E-value=10 Score=48.03 Aligned_cols=75 Identities=16% Similarity=0.221 Sum_probs=58.3
Q ss_pred hhhhhhhhccCCCCchHHHHHHHHHhhhc--hhHHHHHHHHHHhhhccccchHHHHHHHHhhhcccCCh---HHHHHHHH
Q 000307 1609 SSLVSAIFHAVPVAPEYVWVEAAGILGNI--SSIEEISERFFKRALSVYPFSIKLWKCYYDLSKTKGDL---NTIVKAAR 1683 (1690)
Q Consensus 1609 s~l~nai~~a~pvape~vWveAa~~l~~l--~~~~~i~~rfy~~AlsvyPfS~~LW~~y~~~~k~~g~~---~~ive~ar 1683 (1690)
.--+++=+.++|-.-.-+..--+.++..+ ++..-+ +-+|.+|+--|.=-..||..|+.++.-.|.+ .-|--+|+
T Consensus 479 ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~-r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 479 ARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANI-REYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHH-HHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHH
Confidence 34577888888888887777766666543 444555 8899999999999999999999999999988 45555555
Q ss_pred H
Q 000307 1684 E 1684 (1690)
Q Consensus 1684 ~ 1684 (1690)
.
T Consensus 558 k 558 (568)
T KOG2396|consen 558 K 558 (568)
T ss_pred H
Confidence 4
No 238
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.43 E-value=1.9e+02 Score=34.65 Aligned_cols=121 Identities=14% Similarity=0.064 Sum_probs=85.9
Q ss_pred hhhhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHHHHHHHHHHH-hcchHHHHHHHHHHHHhCCCcchh-HHHHHHH
Q 000307 1247 EKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAV-LNGLECSMNLLEKYIKLYPSCLEL-VLMKARL 1324 (1690)
Q Consensus 1247 EPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tKLN~IRq~I~-lEdse~al~LfdklLe~~P~d~eL-~L~AayL 1324 (1690)
+-..+++.++.|.+||.. +++.+.. .+ -.+| +.+|.+ +|.-..++..|+++-...-.+.-| .=+-.|+
T Consensus 129 d~ekaI~~YE~Aae~yk~---ees~ssA--NK--C~lK---vA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf 198 (288)
T KOG1586|consen 129 DFEKAIAHYEQAAEYYKG---EESVSSA--NK--CLLK---VAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF 198 (288)
T ss_pred HHHHHHHHHHHHHHHHcc---hhhhhhH--HH--HHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence 456789999999999974 5443332 11 1223 335666 778889999999988877777666 2222333
Q ss_pred hhccC-------CCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHH
Q 000307 1325 QKHDF-------GDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1377 (1690)
Q Consensus 1325 ~~k~m-------~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ 1377 (1690)
.+.+| .-.+...+++-.+++|.=....-|-+.-=+..+++.++.+.--+.+..
T Consensus 199 lkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d~e~fte~vke 258 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQDIEKFTEVVKE 258 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 33221 223347889999999999989999999999999999999888888877
No 239
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=74.49 E-value=1.1e+02 Score=35.41 Aligned_cols=185 Identities=17% Similarity=0.088 Sum_probs=107.7
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHH
Q 000307 1049 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAY 1124 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aY 1124 (1690)
......-++..+.=|..-+.+...|-.++.+- .. +|. .+.......+ ++.+....+ .|
T Consensus 101 ~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R------~~---~l~-~~~~~~~~~~~~l~~a~~aRk~g--------~~ 162 (352)
T PF02259_consen 101 PQDLKSLLKRWRSRLPNMQDDFSVWEPILSLR------RL---VLS-LILLPEELAETWLKFAKLARKAG--------NF 162 (352)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHH------HH---HHh-cccchhHHHHHHHHHHHHHHHCC--------Cc
Confidence 44555666667777777777777887777661 11 111 1111212222 344445566 77
Q ss_pred HHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHh----c-
Q 000307 1125 DAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCL----T- 1199 (1690)
Q Consensus 1125 drAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YL----t- 1199 (1690)
+.|..++.++...... .+.....+.+..+.++-.+|+-.+||..|..+......+.-. ...-..+..-+ .
T Consensus 163 ~~A~~~l~~~~~~~~~----~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 237 (352)
T PF02259_consen 163 QLALSALNRLFQLNPS----SESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNID-SISNAELKSGLLESLEV 237 (352)
T ss_pred HHHHHHHHHHhccCCc----ccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccc-cccHHHHhhcccccccc
Confidence 7788877666554311 122247788888999999999999999887777422222111 01111111110 0
Q ss_pred ----cCCccchhHHHHHHHhhccccHHHHhhc------cchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHh
Q 000307 1200 ----ISDKLIFWVCCVYLVIYRKLPDAVLQLL------ECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVEL 1264 (1690)
Q Consensus 1200 ----~sDkc~AwLc~iYdl~YrvLPGd~y~qn------e~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~ 1264 (1690)
..+.....+ ......+.|.|.+.. +..+++... |....+.+|+..-+.+..| .+|..
T Consensus 238 ~~~~~~~~~~~~~----~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~k~~~~~a-~~~~~ 304 (352)
T PF02259_consen 238 ISSTNLDKESKEL----KAKAFLLLAKWLDELYSKLSSESSDEILKY---YKEATKLDPSWEKAWHSWA-LFNDK 304 (352)
T ss_pred ccccchhhhhHHH----HHHHHHHHHHHHHhhccccccccHHHHHHH---HHHHHHhChhHHHHHHHHH-HHHHH
Confidence 001111111 223335678888887 788888998 9999999999999999996 65543
No 240
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=73.91 E-value=14 Score=46.84 Aligned_cols=110 Identities=16% Similarity=0.252 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----------HH----------HHHHh
Q 000307 1053 KKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----------LW----------LMYIN 1112 (1690)
Q Consensus 1053 DAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----------Lw----------~mYIN 1112 (1690)
.+-..+=.+||++||+-+.+|.-++.=. -.+..++.++|++||+..+.+|. .| .+|+.
T Consensus 185 ~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~K 262 (539)
T PF04184_consen 185 QARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAK 262 (539)
T ss_pred HHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhH
Confidence 4444555789999999999999888631 23356788999999999987776 11 13333
Q ss_pred cCCCcccchHHH-------HHHHHHHHHhhhcCCC-CcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhc
Q 000307 1113 SRTPLNHRLDAY-------DAALSVLCRCASASDG-DEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1177 (1690)
Q Consensus 1113 sr~s~ddrl~aY-------drAI~aLe~las~~~p-Dr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLE 1177 (1690)
- |+++| ++||..+-+|.+.++. |. +-+-..|+.+|.-.+.|..+-..|.+..
T Consensus 263 r------RLAmCarklGr~~EAIk~~rdLlke~p~~~~-------l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 R------RLAMCARKLGRLREAIKMFRDLLKEFPNLDN-------LNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred H------HHHHHHHHhCChHHHHHHHHHHHhhCCccch-------hhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 2 34454 7899999998887622 34 5566778888899999998877665554
No 241
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=73.79 E-value=3.7 Score=28.99 Aligned_cols=32 Identities=0% Similarity=-0.098 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHhcCCC
Q 000307 1071 ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG 1102 (1690)
Q Consensus 1071 eaWyeyl~lY~~~~~~~ea~emfekAVelaP~ 1102 (1690)
.+|+.++.+|..+++.+.+...|.+|++.+|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 45666666666666666666666666666654
No 242
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=72.41 E-value=6.3 Score=27.75 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhhcChHHHHHHHHHHHhhccC
Q 000307 1428 GYLNLSLHRLLQNDWNEARLAIDAALKAAAS 1458 (1690)
Q Consensus 1428 a~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~ 1458 (1690)
..+|.+|++ .++.++|...|..+++..|.
T Consensus 5 ~~~a~~~~~--~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 5 YNLGNAYLK--LGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHH--HhhHHHHHHHHHHHHccCCC
Confidence 678899999 99999999999999998774
No 243
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=71.07 E-value=2.7e+02 Score=35.95 Aligned_cols=310 Identities=15% Similarity=0.147 Sum_probs=167.9
Q ss_pred hhhhhchhhhHHHHHHH--HHHhcccc--CchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC---------Cch
Q 000307 1022 NKLKQVELSNEQCVEMA--LLILNQDA--NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN---------SVG 1088 (1690)
Q Consensus 1022 n~Le~~~~d~qlWl~lA--l~~Lnq~~--n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~---------~~e 1088 (1690)
.+--..+++.+||.-+- ..+.|... -+--..-+|+..-=.|.=.+|.+...|-+|+.+.-.-.. -..
T Consensus 100 ~rCL~k~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~ 179 (660)
T COG5107 100 GRCLKKSLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDK 179 (660)
T ss_pred HHHHhhhccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHH
Confidence 34444556788896553 34455332 123346678887777999999999999999988543322 122
Q ss_pred HHHHHHHHHhcCCCCHH-HHHHHHhcCC---------CcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHH
Q 000307 1089 KDDMFSYSVKHNEGSYA-LWLMYINSRT---------PLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQ 1158 (1690)
Q Consensus 1089 a~emfekAVelaP~NY~-Lw~mYINsr~---------s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~Lvq 1158 (1690)
.+..+.+|+.--=+|-. ||.=|-+.+. -+.+....|-.|-+.|-+.
T Consensus 180 iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~------------------------ 235 (660)
T COG5107 180 IRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEI------------------------ 235 (660)
T ss_pred HHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHH------------------------
Confidence 34567788887777777 8888876551 1223333344443333222
Q ss_pred HHhhhcCHHHHHHHHHhhcc-cc----cCCCCcccccHHHHHHHhccCCccch-------hHHHHH--HHhhccc-cHHH
Q 000307 1159 CFCMSGNTEKAIQRISRLLI-PA----TGSNDRHSLFLSDILTCLTISDKLIF-------WVCCVY--LVIYRKL-PDAV 1223 (1690)
Q Consensus 1159 LY~qSGnydKAI~tL~rLEq-~A----l~G~sE~~lSLsKi~~YLt~sDkc~A-------wLc~iY--dl~YrvL-PGd~ 1223 (1690)
-|+-..+.+.+-+.. +| .-+.+. ++-.-| ..+.|+-.. .+.++| -+-|-.+ +.-|
T Consensus 236 -----~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~-WlNwIk----wE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw 305 (660)
T COG5107 236 -----QNLTRGLSVKNPINLRTANKAARTSDSN-WLNWIK----WEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVW 305 (660)
T ss_pred -----HHHhccccccCchhhhhhccccccccch-hhhHhh----HhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHH
Confidence 222222221111110 00 001111 111111 112222222 555565 3333333 3344
Q ss_pred Hhhcc------chhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhh-------------------ccc
Q 000307 1224 LQLLE------CEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKET-------------------NLR 1278 (1690)
Q Consensus 1224 y~qne------~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~-------------------n~k 1278 (1690)
|+-.. .++.|+.. ...-...-|. ..|-++ .||+. .|+++...+. +.+
T Consensus 306 ~dys~Y~~~isd~q~al~t---v~rg~~~sps---L~~~ls-e~yel-~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~ 377 (660)
T COG5107 306 FDYSEYLIGISDKQKALKT---VERGIEMSPS---LTMFLS-EYYEL-VNDEEAVYGCFDKCTQDLKRKYSMGESESASK 377 (660)
T ss_pred HHHHHHHhhccHHHHHHHH---HHhcccCCCc---hheeHH-HHHhh-cccHHHHhhhHHHHHHHHHHHHhhhhhhhhcc
Confidence 44332 34444443 1222222333 344453 56665 5544433331 111
Q ss_pred c------hhHH------HHHHHHHH----HH-hcchHHHHHHHHHHHHhCCCcchhHHHHHHHhhccCCC--ccHHHHHH
Q 000307 1279 S------AHCF------AVNHIWCM----AV-LNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGD--LSSVGFEE 1339 (1690)
Q Consensus 1279 ~------d~~t------KLN~IRq~----I~-lEdse~al~LfdklLe~~P~d~eL~L~AayL~~k~m~e--~Ai~vfe~ 1339 (1690)
. .+++ |+.+..|. +. -++.+.|+.+|-++=+..=..-++-+++|+|.-....+ .|..+|+-
T Consensus 378 ~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifel 457 (660)
T COG5107 378 VDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFEL 457 (660)
T ss_pred ccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHH
Confidence 1 1111 22333332 22 44889999999999888867777778888887665555 55599999
Q ss_pred HHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHH
Q 000307 1340 ALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1377 (1690)
Q Consensus 1340 aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ 1377 (1690)
-|..-|+... .=+-|+.+++.-++-+.|..|.+.
T Consensus 458 Gl~~f~d~~~----y~~kyl~fLi~inde~naraLFet 491 (660)
T COG5107 458 GLLKFPDSTL----YKEKYLLFLIRINDEENARALFET 491 (660)
T ss_pred HHHhCCCchH----HHHHHHHHHHHhCcHHHHHHHHHH
Confidence 9999999888 667788888888888888877754
No 244
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=69.15 E-value=9.1 Score=38.01 Aligned_cols=47 Identities=15% Similarity=0.092 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCC
Q 000307 1055 ALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNE 1101 (1690)
Q Consensus 1055 ALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP 1101 (1690)
.+..|...++.||++..+.|.++..++..+..++|.+-|...|+.++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 35567777777777777777777777777777777777777777774
No 245
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.42 E-value=69 Score=38.53 Aligned_cols=167 Identities=9% Similarity=0.072 Sum_probs=112.0
Q ss_pred hhhhhhhchhh---hHHHHHHHHHHhcccc---CchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhCCCCchHHHH
Q 000307 1020 VLNKLKQVELS---NEQCVEMALLILNQDA---NKLEGMKKALSLLSRALEAD-PTSEILWITYLLIFYSNTNSVGKDDM 1092 (1690)
Q Consensus 1020 ~in~Le~~~~d---~qlWl~lAl~~Lnq~~---n~~g~yDAALdLLsrALEIN-PtSAeaWyeyl~lY~~~~~~~ea~em 1092 (1690)
.|+++|++..+ +++|=|---..++--. --.+.|.-.++++..-++-| |..+.+..-+..+-++-|...++.-+
T Consensus 155 ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~y 234 (366)
T KOG2796|consen 155 ILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKY 234 (366)
T ss_pred HHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHH
Confidence 36667776652 3888765422222211 34567888999999999999 77999999999999999999999888
Q ss_pred HH----HHHhcCCCCHH------HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhh
Q 000307 1093 FS----YSVKHNEGSYA------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCM 1162 (1690)
Q Consensus 1093 fe----kAVelaP~NY~------Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~q 1162 (1690)
|+ -+=+++..-.. -+.+|+.+. +|..|..+|-+.....+.+- +--=-=.|.+||
T Consensus 235 f~~vek~~~kL~~~q~~~~V~~n~a~i~lg~n--------n~a~a~r~~~~i~~~D~~~~------~a~NnKALcllY-- 298 (366)
T KOG2796|consen 235 FQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQN--------NFAEAHRFFTEILRMDPRNA------VANNNKALCLLY-- 298 (366)
T ss_pred HHHHHHHHhhhhccchhHHHHhhhhhheeccc--------chHHHHHHHhhccccCCCch------hhhchHHHHHHH--
Confidence 88 56666644333 678899999 99999999976666542331 000001233444
Q ss_pred hcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccchhHHHHHHHhhc
Q 000307 1163 SGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYR 1217 (1690)
Q Consensus 1163 SGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~Yr 1217 (1690)
.|+...||.+|..+.+ ..|+..+- +--++.||-.|++.|-
T Consensus 299 lg~l~DAiK~~e~~~~-----~~P~~~l~----------es~~~nL~tmyEL~Ys 338 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQ-----QDPRHYLH----------ESVLFNLTTMYELEYS 338 (366)
T ss_pred HHHHHHHHHHHHHHhc-----cCCccchh----------hhHHHHHHHHHHHHhh
Confidence 5888889999888776 44432221 2234567777777774
No 246
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.91 E-value=72 Score=37.86 Aligned_cols=178 Identities=17% Similarity=0.193 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhcccc--CchhhH------------HHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhC-CCCchHH
Q 000307 1032 EQCVEMALLILNQDA--NKLEGM------------KKALSLLSRALEADPT------SEILWITYLLIFYSN-TNSVGKD 1090 (1690)
Q Consensus 1032 qlWl~lAl~~Lnq~~--n~~g~y------------DAALdLLsrALEINPt------SAeaWyeyl~lY~~~-~~~~ea~ 1090 (1690)
..+++.|-.++--.- ...-.| ..|.+.|.++++|-.. ++--+.+++.||-.- ..-+.+.
T Consensus 55 ~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI 134 (288)
T KOG1586|consen 55 DAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAI 134 (288)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHH
Confidence 677888866654331 122233 3444666666666543 444555666666322 2334455
Q ss_pred HHHHHHHhcCCCCHH--HHH-HHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCH-
Q 000307 1091 DMFSYSVKHNEGSYA--LWL-MYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNT- 1166 (1690)
Q Consensus 1091 emfekAVelaP~NY~--Lw~-mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGny- 1166 (1690)
..||+|.++-...-. ++. .+|.- ..+...+..|.+||..||+.++.. -+..-.=--+=|.||.-.=|+.-..+.
T Consensus 135 ~~YE~Aae~yk~ees~ssANKC~lKv-A~yaa~leqY~~Ai~iyeqva~~s-~~n~LLKys~KdyflkAgLChl~~~D~v 212 (288)
T KOG1586|consen 135 AHYEQAAEYYKGEESVSSANKCLLKV-AQYAAQLEQYSKAIDIYEQVARSS-LDNNLLKYSAKDYFLKAGLCHLCKADEV 212 (288)
T ss_pred HHHHHHHHHHcchhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh-ccchHHHhHHHHHHHHHHHHhHhcccHH
Confidence 566666655432221 111 11110 112233449999999999998876 332111123357777766666665554
Q ss_pred --HHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccch-hHHHHHH
Q 000307 1167 --EKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIF-WVCCVYL 1213 (1690)
Q Consensus 1167 --dKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~A-wLc~iYd 1213 (1690)
..||+.+..+.|+-+ +.-| ...|.++..-+--+|-..+ -.|..|+
T Consensus 213 ~a~~ALeky~~~dP~F~-dsRE-ckflk~L~~aieE~d~e~fte~vkefD 260 (288)
T KOG1586|consen 213 NAQRALEKYQELDPAFT-DSRE-CKFLKDLLDAIEEQDIEKFTEVVKEFD 260 (288)
T ss_pred HHHHHHHHHHhcCCccc-ccHH-HHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence 445555555554222 2223 3444444444444444444 3444443
No 247
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=66.90 E-value=4.7 Score=31.07 Aligned_cols=29 Identities=10% Similarity=0.071 Sum_probs=12.1
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHhcCC
Q 000307 1073 WITYLLIFYSNTNSVGKDDMFSYSVKHNE 1101 (1690)
Q Consensus 1073 Wyeyl~lY~~~~~~~ea~emfekAVelaP 1101 (1690)
+|.++.+|...+...+|.+.|++.++..|
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 34444444444444444444444444443
No 248
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.54 E-value=2.1e+02 Score=36.94 Aligned_cols=131 Identities=14% Similarity=0.134 Sum_probs=94.7
Q ss_pred hchhhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHhCCCCch-----HHHHHHH
Q 000307 1026 QVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALE-----ADPTSEILWITYLLIFYSNTNSVG-----KDDMFSY 1095 (1690)
Q Consensus 1026 ~~~~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALE-----INPtSAeaWyeyl~lY~~~~~~~e-----a~emfek 1095 (1690)
+..-+.+.=..+++-++....-...+.++|+..|+.+.+ +.-..+.+.|.|+.+|++...... |..++.+
T Consensus 239 a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~ 318 (552)
T KOG1550|consen 239 AKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTK 318 (552)
T ss_pred HhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHH
Confidence 333445666677777888866667889999999999988 222256689999999999875555 8899999
Q ss_pred HHhcCCCCHH--HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHh----hhcCHHHH
Q 000307 1096 SVKHNEGSYA--LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFC----MSGNTEKA 1169 (1690)
Q Consensus 1096 AVelaP~NY~--Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~----qSGnydKA 1169 (1690)
|+++...+=. |+.+|..-. +..++.+|.+.|...+.. +. .+.++.+..||. ...+..+|
T Consensus 319 aA~~g~~~a~~~lg~~~~~g~-----~~~d~~~A~~yy~~Aa~~--G~--------~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 319 AAELGNPDAQYLLGVLYETGT-----KERDYRRAFEYYSLAAKA--GH--------ILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred HHhcCCchHHHHHHHHHHcCC-----ccccHHHHHHHHHHHHHc--CC--------hHHHHHHHHHHHhCCCcCCCHHHH
Confidence 9999865544 787777655 445788999999544432 22 567777777775 45677888
Q ss_pred HH
Q 000307 1170 IQ 1171 (1690)
Q Consensus 1170 I~ 1171 (1690)
..
T Consensus 384 ~~ 385 (552)
T KOG1550|consen 384 FA 385 (552)
T ss_pred HH
Confidence 76
No 249
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=66.00 E-value=7 Score=32.11 Aligned_cols=28 Identities=25% Similarity=0.227 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhhcChHHHHHHHHHHHhhcc
Q 000307 1428 GYLNLSLHRLLQNDWNEARLAIDAALKAAA 1457 (1690)
Q Consensus 1428 a~LGD~Lyq~Lqg~~~EAf~AYDkALk~np 1457 (1690)
..||.+|.+ .|++++|...|++||....
T Consensus 3 ~~Lg~~~~~--~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 3 NNLGRIYRQ--QGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHH--CT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--cCCHHHHHHHHHHHHHhcc
Confidence 678999999 9999999999999886554
No 250
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=65.35 E-value=8.3 Score=29.72 Aligned_cols=28 Identities=25% Similarity=0.600 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1151 DLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1151 DvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
|.++.++.+|...|++++|+..+.++..
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6899999999999999999999988874
No 251
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.19 E-value=3.4 Score=50.08 Aligned_cols=60 Identities=18% Similarity=0.232 Sum_probs=55.9
Q ss_pred cCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH
Q 000307 1046 ANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1105 (1690)
Q Consensus 1046 ~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~ 1105 (1690)
++..|.++.|+.+|-+|+++||.++.+|..-+..|..++.+..+..-|-.|++++|++-.
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~ 183 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAK 183 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccccc
Confidence 345688999999999999999999999999999999999999999999999999998765
No 252
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=62.87 E-value=7.4 Score=46.91 Aligned_cols=62 Identities=19% Similarity=0.197 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhCCCcchh-HHHHHH-HhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHH
Q 000307 1298 ECSMNLLEKYIKLYPSCLEL-VLMKAR-LQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYAL 1363 (1690)
Q Consensus 1298 e~al~LfdklLe~~P~d~eL-~L~Aay-L~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al 1363 (1690)
-.+-+.|-.+++.||.+++| ..+++| +....--+.+.+.|..+|..+|+++. +|..|...-+
T Consensus 124 ~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~----iw~eyfr~El 187 (435)
T COG5191 124 GEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPR----IWIEYFRMEL 187 (435)
T ss_pred HHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCch----HHHHHHHHHH
Confidence 45567899999999999999 555776 55555355667999999999999999 9998887554
No 253
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.61 E-value=67 Score=38.57 Aligned_cols=124 Identities=14% Similarity=0.081 Sum_probs=87.3
Q ss_pred HHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH---HHH
Q 000307 1032 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---LWL 1108 (1690)
Q Consensus 1032 qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~---Lw~ 1108 (1690)
-.|.-+|..+++.+. .+|.|+..+.+..-+...+-.+.+ . .++..-..|..-++++++.+. .-. |+.
T Consensus 108 ~i~~l~aa~i~~~~~----~~deAl~~~~~~~~lE~~Al~VqI---~--lk~~r~d~A~~~lk~mq~ide-d~tLtQLA~ 177 (299)
T KOG3081|consen 108 LIDLLLAAIIYMHDG----DFDEALKALHLGENLEAAALNVQI---L--LKMHRFDLAEKELKKMQQIDE-DATLTQLAQ 177 (299)
T ss_pred HHHHHHhhHHhhcCC----ChHHHHHHHhccchHHHHHHHHHH---H--HHHHHHHHHHHHHHHHHccch-HHHHHHHHH
Confidence 578888888887754 479999999885444433333332 2 233445566677778888883 333 888
Q ss_pred HHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhc
Q 000307 1109 MYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1177 (1690)
Q Consensus 1109 mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLE 1177 (1690)
-||+.- .|. ..+.+|.-.|+++...+ +.. ..++.-++-+..++|||+.|-..+...+
T Consensus 178 awv~la---~gg-ek~qdAfyifeE~s~k~-~~T-------~~llnG~Av~~l~~~~~eeAe~lL~eaL 234 (299)
T KOG3081|consen 178 AWVKLA---TGG-EKIQDAFYIFEELSEKT-PPT-------PLLLNGQAVCHLQLGRYEEAESLLEEAL 234 (299)
T ss_pred HHHHHh---ccc-hhhhhHHHHHHHHhccc-CCC-------hHHHccHHHHHHHhcCHHHHHHHHHHHH
Confidence 888754 112 25899999999999988 555 6889999999999999999988554333
No 254
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=62.50 E-value=42 Score=36.52 Aligned_cols=66 Identities=14% Similarity=0.097 Sum_probs=52.5
Q ss_pred HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCC
Q 000307 1106 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND 1185 (1690)
Q Consensus 1106 Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~s 1185 (1690)
-+.--+..+ .|++|+..|+.+-.++ |-- ....-+-|.|++.|-.+|+|++|+.+++|... +.=.+
T Consensus 16 ~a~~~l~~~--------~Y~~A~~~le~L~~ry-P~g----~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir--LhP~h 80 (142)
T PF13512_consen 16 EAQEALQKG--------NYEEAIKQLEALDTRY-PFG----EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR--LHPTH 80 (142)
T ss_pred HHHHHHHhC--------CHHHHHHHHHHHHhcC-CCC----cccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCC
Confidence 344456778 9999999999998888 432 34467888999999999999999999999887 44445
Q ss_pred c
Q 000307 1186 R 1186 (1690)
Q Consensus 1186 E 1186 (1690)
|
T Consensus 81 p 81 (142)
T PF13512_consen 81 P 81 (142)
T ss_pred C
Confidence 4
No 255
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=62.47 E-value=35 Score=37.11 Aligned_cols=58 Identities=9% Similarity=0.064 Sum_probs=50.5
Q ss_pred chhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH
Q 000307 1048 KLEGMKKALSLLSRALEADPT---SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1105 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPt---SAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~ 1105 (1690)
..|+|+.|...|..-..--|. +..+-..++-.|+..++-++|..-+++=++++|.+-.
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 358899999999998888887 6678888888899999999999999999999998765
No 256
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=62.46 E-value=1.2e+02 Score=36.19 Aligned_cols=127 Identities=17% Similarity=0.218 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHhCCCC--------chHHHHHHHHHhcC
Q 000307 1032 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEIL---WITYLLIFYSNTNS--------VGKDDMFSYSVKHN 1100 (1690)
Q Consensus 1032 qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAea---Wyeyl~lY~~~~~~--------~ea~emfekAVela 1100 (1690)
|.=|.+|+-++ +.++|+.|+..+.|=+..+|+++.+ +|..+..++..... ..+..-|.+-|+--
T Consensus 72 qa~l~l~yA~Y-----k~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry 146 (254)
T COG4105 72 QAQLDLAYAYY-----KNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY 146 (254)
T ss_pred HHHHHHHHHHH-----hcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC
Confidence 44444444433 4578999999999999999987654 44444444444332 23445666677777
Q ss_pred CCCHH---------------------HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHH
Q 000307 1101 EGSYA---------------------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQC 1159 (1690)
Q Consensus 1101 P~NY~---------------------Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqL 1159 (1690)
|++-. ++.+|+.-+ +|..|+.=++++...+ ++- ..+-|.|..|...
T Consensus 147 PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~--------~~~AA~nR~~~v~e~y-~~t----~~~~eaL~~l~ea 213 (254)
T COG4105 147 PNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRG--------AYVAAINRFEEVLENY-PDT----SAVREALARLEEA 213 (254)
T ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc--------ChHHHHHHHHHHHhcc-ccc----cchHHHHHHHHHH
Confidence 76643 788898888 8999999888888887 442 3567889999999
Q ss_pred HhhhcCHHHHHHHHHhhc
Q 000307 1160 FCMSGNTEKAIQRISRLL 1177 (1690)
Q Consensus 1160 Y~qSGnydKAI~tL~rLE 1177 (1690)
|.+-|-.+.| ++..++.
T Consensus 214 Y~~lgl~~~a-~~~~~vl 230 (254)
T COG4105 214 YYALGLTDEA-KKTAKVL 230 (254)
T ss_pred HHHhCChHHH-HHHHHHH
Confidence 9998888877 3344444
No 257
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=61.40 E-value=61 Score=37.42 Aligned_cols=144 Identities=17% Similarity=0.069 Sum_probs=100.2
Q ss_pred HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHH-----------HHHHHhhhc
Q 000307 1318 VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR-----------WFHSVWKVQ 1386 (1690)
Q Consensus 1318 ~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~-----------ff~gia~~Q 1386 (1690)
.+..+--++-+ |+-...-..+.+.+.|.+.. ++-|..-+.+-|++.++.++-.+ -.+|.+.-|
T Consensus 61 ~~~~a~~q~ld-P~R~~Rea~~~~~~ApTvqn-----r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aq 134 (251)
T COG4700 61 TLLMALQQKLD-PERHLREATEELAIAPTVQN-----RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQ 134 (251)
T ss_pred HHHHHHHHhcC-hhHHHHHHHHHHhhchhHHH-----HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHH
Confidence 33334445555 77777667888999999887 88899999999999999999988 667777777
Q ss_pred c---cccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhccCCcHHH
Q 000307 1387 Y---SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKH 1463 (1690)
Q Consensus 1387 ~---~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~ 1463 (1690)
- +..++..++.+...- + + +| +|-|-| -.++-.|+- +|....|..||+-|+.+.|+- .
T Consensus 135 fa~~~~A~a~~tLe~l~e~-~----p----a~-----r~pd~~-Ll~aR~laa--~g~~a~Aesafe~a~~~ypg~--~- 194 (251)
T COG4700 135 FAIQEFAAAQQTLEDLMEY-N----P----AF-----RSPDGH-LLFARTLAA--QGKYADAESAFEVAISYYPGP--Q- 194 (251)
T ss_pred HhhccHHHHHHHHHHHhhc-C----C----cc-----CCCCch-HHHHHHHHh--cCCchhHHHHHHHHHHhCCCH--H-
Confidence 6 455555555532211 1 1 21 222322 356789999 999999999999999999975 2
Q ss_pred HHHHHHHHHhcCCCCCCcccchhh
Q 000307 1464 CVREHAMLLLINESEPKEGAPISW 1487 (1690)
Q Consensus 1464 cLNNYAYFLSle~~dL~KAEqMS~ 1487 (1690)
.---|+.||...+++-..-++.-.
T Consensus 195 ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 195 ARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHH
Confidence 333599999987764333344333
No 258
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=61.28 E-value=28 Score=38.38 Aligned_cols=60 Identities=15% Similarity=0.163 Sum_probs=50.6
Q ss_pred HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1106 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1106 Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
++.+|..-+ +++.|+.+|.++-.. .-....++|+.+.++.+....||+..+..-|.+.+.
T Consensus 42 l~~~~~~~G--------d~~~A~k~y~~~~~~-----~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 42 LADHYCKIG--------DLEEALKAYSRARDY-----CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHhh--------hHHHHHHHHHHHhhh-----cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 899999999 999999999775332 223457799999999999999999999888888775
No 259
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=60.08 E-value=22 Score=43.82 Aligned_cols=167 Identities=12% Similarity=0.085 Sum_probs=106.5
Q ss_pred cccccccccchhhhhhhh------hchhhhHHHHHHH--HHHhccccCchhhHHHHHHHHHHHHHhCCCCH-----HHHH
Q 000307 1008 NRQSSFFRSRNGVLNKLK------QVELSNEQCVEMA--LLILNQDANKLEGMKKALSLLSRALEADPTSE-----ILWI 1074 (1690)
Q Consensus 1008 ~~~~rYF~~~~d~in~Le------~~~~d~qlWl~lA--l~~Lnq~~n~~g~yDAALdLLsrALEINPtSA-----eaWy 1074 (1690)
.+..+|=.+..--..+|. ++----++++++| ...| ..+.+++.+=.-||+.-.+.+ -+.-
T Consensus 54 s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l-------~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l 126 (518)
T KOG1941|consen 54 SEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL-------CEFHKTISYCKTCLGLPGTRAGQLGGQVSL 126 (518)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhhHHHHHHHHhcCCCCCcccccchhhh
Confidence 566666554443333332 2222225555554 3333 446778888888888877766 2334
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----------HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcC-CCCcc
Q 000307 1075 TYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----------LWLMYINSRTPLNHRLDAYDAALSVLCRCASAS-DGDEM 1143 (1690)
Q Consensus 1075 eyl~lY~~~~~~~ea~emfekAVelaP~NY~----------Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~-~pDr~ 1143 (1690)
-++.-+..+..-+.+++.|++|.+++-.+.. |..+|-..+ +|++|+-+.++.++-. .-...
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~--------D~~Kal~f~~kA~~lv~s~~l~ 198 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK--------DYEKALFFPCKAAELVNSYGLK 198 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH--------hhhHHhhhhHhHHHHHHhcCcC
Confidence 4566666777778889999999999866655 666776666 9999999998876632 01111
Q ss_pred hhhhh-hHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccch
Q 000307 1144 HASAC-ILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIF 1206 (1690)
Q Consensus 1144 ~~Sa~-ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~A 1206 (1690)
+.+++ =-=.|+.|+=-|.+.|+...|-. - +.| .+++-|.+||+-+-
T Consensus 199 d~~~kyr~~~lyhmaValR~~G~LgdA~e------~-----C~E------a~klal~~Gdra~~ 245 (518)
T KOG1941|consen 199 DWSLKYRAMSLYHMAVALRLLGRLGDAME------C-----CEE------AMKLALQHGDRALQ 245 (518)
T ss_pred chhHHHHHHHHHHHHHHHHHhcccccHHH------H-----HHH------HHHHHHHhCChHHH
Confidence 12221 12246777778888898887754 2 345 68888999998766
No 260
>PRK10941 hypothetical protein; Provisional
Probab=58.10 E-value=23 Score=41.79 Aligned_cols=58 Identities=19% Similarity=0.047 Sum_probs=54.5
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1105 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~ 1105 (1690)
..++++.|+.+..+.|.++|+++.-|=.-+.+|.+++-...|.+-+++-|++.|+.-.
T Consensus 193 ~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 193 EEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 4578999999999999999999999999999999999999999999999999998765
No 261
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.53 E-value=2.8e+02 Score=34.18 Aligned_cols=284 Identities=16% Similarity=0.103 Sum_probs=152.7
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH----HH-HHHHhcCCCcccchHHH
Q 000307 1050 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LW-LMYINSRTPLNHRLDAY 1124 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~----Lw-~mYINsr~s~ddrl~aY 1124 (1690)
.+|..|+.+|..-+|.+|.+-..+..++..||...+-.+|.+++++--.+.|.--. -+ .+|-.-+ |
T Consensus 24 ~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i---------~ 94 (459)
T KOG4340|consen 24 ARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI---------Y 94 (459)
T ss_pred hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc---------c
Confidence 46899999999999999999999999999999999999999999999999974322 11 2222222 3
Q ss_pred HHHHHHHHHhhhc---------------C-CCCcchhhhh----------hHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1125 DAALSVLCRCASA---------------S-DGDEMHASAC----------ILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1125 drAI~aLe~las~---------------~-~pDr~~~Sa~----------ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
.+|+.+.-.|--. + ..|. .-++ --|++.-..=+.-+.|+|+.|+++.+.-.+
T Consensus 95 ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl--~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlq 172 (459)
T KOG4340|consen 95 ADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDL--PGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQ 172 (459)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccC--cchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHh
Confidence 3333333222100 0 0110 0000 124444455566678888888888877666
Q ss_pred cccCCCCcccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHH
Q 000307 1179 PATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMA 1258 (1690)
Q Consensus 1179 ~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA 1258 (1690)
..|-++ -+.-+-...+.+.+|...| |-.+-+++=|-+-..=-+.-|..-|..++ ---.|..+|-.-|
T Consensus 173 --vsGyqp-llAYniALaHy~~~qyasA-Lk~iSEIieRG~r~HPElgIGm~tegiDv---------rsvgNt~~lh~Sa 239 (459)
T KOG4340|consen 173 --VSGYQP-LLAYNLALAHYSSRQYASA-LKHISEIIERGIRQHPELGIGMTTEGIDV---------RSVGNTLVLHQSA 239 (459)
T ss_pred --hcCCCc-hhHHHHHHHHHhhhhHHHH-HHHHHHHHHhhhhcCCccCccceeccCch---------hcccchHHHHHHH
Confidence 667776 4554555555566665554 11111222222211111111111111111 1112222222111
Q ss_pred HHHHHhhcCCcchhhhhcccchhHHHHHHHHHHHH--hcchHHHHHHHHHHHHhCCCcch-h---HHHH-HHHhhccCCC
Q 000307 1259 VNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAV--LNGLECSMNLLEKYIKLYPSCLE-L---VLMK-ARLQKHDFGD 1331 (1690)
Q Consensus 1259 ~dYY~~~~ndEsla~~~n~k~d~~tKLN~IRq~I~--lEdse~al~LfdklLe~~P~d~e-L---~L~A-ayL~~k~m~e 1331 (1690)
.--++| +...|. ..+.+.|. +.++.++|..-+ + .|.- +.+.+..-+.
T Consensus 240 ----------------------l~eAfN-LKaAIeyq~~n~eAA~---eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~ 293 (459)
T KOG4340|consen 240 ----------------------LVEAFN-LKAAIEYQLRNYEAAQ---EALTDMPPRAEEELDPVTLHNQALMNMDARPT 293 (459)
T ss_pred ----------------------HHHHhh-hhhhhhhhcccHHHHH---HHhhcCCCcccccCCchhhhHHHHhcccCCcc
Confidence 111223 334443 22566665 566777876432 2 4433 3344555477
Q ss_pred ccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHH----HHHHHhhhcc
Q 000307 1332 LSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR----WFHSVWKVQY 1387 (1690)
Q Consensus 1332 ~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~----ff~gia~~Q~ 1387 (1690)
+++.-+.=+|.++| .| +=.|--++-..-..+=++.|..++-+ =|..+..|+.
T Consensus 294 ~g~~KLqFLL~~nP--fP--~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly 349 (459)
T KOG4340|consen 294 EGFEKLQFLLQQNP--FP--PETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLY 349 (459)
T ss_pred ccHHHHHHHHhcCC--CC--hHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHH
Confidence 78877788888888 33 11444444444455567777777766 3444444444
No 262
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=57.25 E-value=1.7e+02 Score=33.47 Aligned_cols=128 Identities=13% Similarity=0.071 Sum_probs=88.3
Q ss_pred HHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC----CCchHHHHHHHHHhcC-CCC---
Q 000307 1032 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNT----NSVGKDDMFSYSVKHN-EGS--- 1103 (1690)
Q Consensus 1032 qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~----~~~ea~emfekAVela-P~N--- 1103 (1690)
..-..++..+.+..- ...+...|+.+|. ...+...+++.+.|+.+|.... ...++...|++|++.. +..
T Consensus 74 ~a~~~l~~~y~~g~g-v~~~~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~ 150 (292)
T COG0790 74 AALALLGQMYGAGKG-VSRDKTKAADWYR--CAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALA 150 (292)
T ss_pred HHHHHHHHHHHhccC-ccccHHHHHHHHH--HHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHH
Confidence 566667777766643 2345799999999 7778889999999999998843 5678889999999994 333
Q ss_pred -HHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHH----hhhcCHHHHHHHH
Q 000307 1104 -YALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCF----CMSGNTEKAIQRI 1173 (1690)
Q Consensus 1104 -Y~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY----~qSGnydKAI~tL 1173 (1690)
+.|+++|.+-... .+-......|+..|.+.+... . .+..+.+..+| ....|+.+|+.=+
T Consensus 151 ~~~l~~~~~~g~~~-~~~~~~~~~A~~~~~~aa~~~---~-------~~a~~~lg~~y~~G~Gv~~d~~~A~~wy 214 (292)
T COG0790 151 MYRLGLAYLSGLQA-LAVAYDDKKALYLYRKAAELG---N-------PDAQLLLGRMYEKGLGVPRDLKKAFRWY 214 (292)
T ss_pred HHHHHHHHHcChhh-hcccHHHHhHHHHHHHHHHhc---C-------HHHHHHHHHHHHcCCCCCcCHHHHHHHH
Confidence 4499999886400 122233348999997776654 1 34444455555 4466788887633
No 263
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=55.52 E-value=57 Score=37.23 Aligned_cols=70 Identities=16% Similarity=0.034 Sum_probs=49.0
Q ss_pred HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1106 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1106 Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
+||+|-..+. -..-..-+.+|+..|++.....+... ...-=.=+++.+..|+...|++++|+.-+.+|..
T Consensus 124 lAWlyR~~~~-~~~E~~fl~~Al~~y~~a~~~e~~~~--~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 124 LAWLYRDLGD-EENEKRFLRKALEFYEEAYENEDFPI--EGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHhhccCC-HHHHHHHHHHHHHHHHHHHHhCcCCC--CCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 7888888772 22233456889999988776542211 0000023677789999999999999999999997
No 264
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=54.27 E-value=71 Score=36.86 Aligned_cols=155 Identities=14% Similarity=0.031 Sum_probs=90.1
Q ss_pred CCCcchhHHHHHH-HhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHHHHH-HHhhhccc
Q 000307 1311 YPSCLELVLMKAR-LQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFH-SVWKVQYS 1388 (1690)
Q Consensus 1311 ~P~d~eL~L~Aay-L~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ff~-gia~~Q~~ 1388 (1690)
.....+..|.-+. ..+.+.-..|...+.++....+....-..-+..+++...|..|+.+.|+.+++.+.. .+......
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 4444555444444 444554556777788888766433211122778889999999999999999988665 23322111
Q ss_pred -ccccch-hhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHh----hhcChHHHHHHHHHHHhhccCCcHH
Q 000307 1389 -QVEISD-PLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRL----LQNDWNEARLAIDAALKAAASEHFK 1462 (1690)
Q Consensus 1389 -~deALD-~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~----Lqg~~~EAf~AYDkALk~np~N~~i 1462 (1690)
....+. .+-.....+.... ...+ ...+.--+|-.+|.-..+. -.+..+++...|.+|.+..|.. .
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~ 292 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTN----LDKE---SKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW--E 292 (352)
T ss_pred ccHHHHhhccccccccccccc----hhhh---hHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH--H
Confidence 111110 0000000000000 0010 1222333447777766663 4599999999999999999988 6
Q ss_pred HHHHHHHHHHhc
Q 000307 1463 HCVREHAMLLLI 1474 (1690)
Q Consensus 1463 ~cLNNYAYFLSl 1474 (1690)
.+|..+|.|...
T Consensus 293 k~~~~~a~~~~~ 304 (352)
T PF02259_consen 293 KAWHSWALFNDK 304 (352)
T ss_pred HHHHHHHHHHHH
Confidence 799998888663
No 265
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=53.31 E-value=51 Score=32.87 Aligned_cols=44 Identities=14% Similarity=0.113 Sum_probs=36.1
Q ss_pred chHHHHHHHHHhcCCCCHH----HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcC
Q 000307 1087 VGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASAS 1138 (1690)
Q Consensus 1087 ~ea~emfekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~ 1138 (1690)
....+.++++++-+|++.. |+..|+..+ .|+.|++.|-.+...+
T Consensus 5 ~~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g--------~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 5 APDIAALEAALAANPDDLDARYALADALLAAG--------DYEEALDQLLELVRRD 52 (90)
T ss_dssp -HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT---------HHHHHHHHHHHHCC-
T ss_pred cccHHHHHHHHHcCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHhC
Confidence 3456889999999999966 999999999 9999999998888876
No 266
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=52.68 E-value=1.3e+02 Score=37.59 Aligned_cols=127 Identities=13% Similarity=0.060 Sum_probs=80.0
Q ss_pred CchhhHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHhCCC---------CchHHHHHHHHHhcCCCCHH---HHHHHHhc
Q 000307 1047 NKLEGMKKALSLLSRA-LEADPTSEILWITYLLIFYSNTN---------SVGKDDMFSYSVKHNEGSYA---LWLMYINS 1113 (1690)
Q Consensus 1047 n~~g~yDAALdLLsrA-LEINPtSAeaWyeyl~lY~~~~~---------~~ea~emfekAVelaP~NY~---Lw~mYINs 1113 (1690)
|..|+.+.|++++... ..-.+.+++.|+..+++|-.+-. -..|.+.|.+|.+.+|+=|. ++-+..-.
T Consensus 193 n~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~ 272 (374)
T PF13281_consen 193 NKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLA 272 (374)
T ss_pred ccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHc
Confidence 6689999999999994 45567799999999999865433 24567899999999954443 44444434
Q ss_pred CCCcccchHHHHHHHHHHHHhhhcC-CCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1114 RTPLNHRLDAYDAALSVLCRCASAS-DGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1114 r~s~ddrl~aYdrAI~aLe~las~~-~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
+-.+..+...-.-.+. |..+.... .-++ ..+-|.. -.++.++.-.|+++||++.+.++..
T Consensus 273 g~~~~~~~el~~i~~~-l~~llg~kg~~~~-~~dYWd~---ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 273 GHDFETSEELRKIGVK-LSSLLGRKGSLEK-MQDYWDV---ATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred CCcccchHHHHHHHHH-HHHHHHhhccccc-cccHHHH---HHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 4344443322222211 12222211 1221 2333433 3456777889999999999988885
No 267
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.31 E-value=1.1e+02 Score=35.44 Aligned_cols=116 Identities=16% Similarity=0.123 Sum_probs=76.8
Q ss_pred HHHHHHHHHhcCCCC-HH------HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHh
Q 000307 1089 KDDMFSYSVKHNEGS-YA------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFC 1161 (1690)
Q Consensus 1089 a~emfekAVelaP~N-Y~------Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~ 1161 (1690)
.....++-+.-+|.+ |- ++-.+...+ .+++|+.-|....... .|. .=-.|. -+.|+-+..
T Consensus 71 ~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~--------~~d~A~aqL~~~l~~t-~De--~lk~l~--~lRLArvq~ 137 (207)
T COG2976 71 SIAAAEKFVQANGKTIYAVLAALELAKAEVEAN--------NLDKAEAQLKQALAQT-KDE--NLKALA--ALRLARVQL 137 (207)
T ss_pred hHHHHHHHHhhccccHHHHHHHHHHHHHHHhhc--------cHHHHHHHHHHHHccc-hhH--HHHHHH--HHHHHHHHH
Confidence 334445555555333 43 777788888 9999999997665555 442 001122 245667788
Q ss_pred hhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhhhcCCCCCc
Q 000307 1162 MSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPV 1241 (1690)
Q Consensus 1162 qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~I~W~yv 1241 (1690)
++|.+|+|+.+|+.+-. + .|..++-.|-||+|+..|.+++|..- |.
T Consensus 138 q~~k~D~AL~~L~t~~~-------~------------------------~w~~~~~elrGDill~kg~k~~Ar~a---y~ 183 (207)
T COG2976 138 QQKKADAALKTLDTIKE-------E------------------------SWAAIVAELRGDILLAKGDKQEARAA---YE 183 (207)
T ss_pred HhhhHHHHHHHHhcccc-------c------------------------cHHHHHHHHhhhHHHHcCchHHHHHH---HH
Confidence 99999999997755542 1 12344556789999999999999887 77
Q ss_pred ccchhhhhhH
Q 000307 1242 QLEDDEKQRA 1251 (1690)
Q Consensus 1242 qvlkdEPdna 1251 (1690)
+.+..+++.+
T Consensus 184 kAl~~~~s~~ 193 (207)
T COG2976 184 KALESDASPA 193 (207)
T ss_pred HHHHccCChH
Confidence 7776654443
No 268
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=51.85 E-value=39 Score=41.06 Aligned_cols=78 Identities=19% Similarity=0.155 Sum_probs=65.9
Q ss_pred chHHHHHHHHHHHHhCCCcchh-HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHH
Q 000307 1296 GLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAEL 1374 (1690)
Q Consensus 1296 dse~al~LfdklLe~~P~d~eL-~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L 1374 (1690)
..+.|..||+-+|++.|+.+++ .=++.+..+.+--..|=..|-+||.+.|-|.. +- +.++.-.+.|-.|
T Consensus 131 k~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse----AL------vnR~RT~plV~~i 200 (472)
T KOG3824|consen 131 KLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE----AL------VNRARTTPLVSAI 200 (472)
T ss_pred chHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH----HH------hhhhccchHHHHH
Confidence 7899999999999999999999 77888888887555677889999999999999 54 5666677888888
Q ss_pred HHHHHHHHh
Q 000307 1375 MDRWFHSVW 1383 (1690)
Q Consensus 1375 ~~~ff~gia 1383 (1690)
=+++|.++-
T Consensus 201 D~r~l~svd 209 (472)
T KOG3824|consen 201 DRRMLRSVD 209 (472)
T ss_pred HHHHHHHHH
Confidence 888877653
No 269
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=51.24 E-value=52 Score=36.13 Aligned_cols=76 Identities=17% Similarity=0.178 Sum_probs=59.1
Q ss_pred HHHHHHHhcCCCcccchHHHHHHHHHHHHhhh-cCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCC
Q 000307 1105 ALWLMYINSRTPLNHRLDAYDAALSVLCRCAS-ASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGS 1183 (1690)
Q Consensus 1105 ~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las-~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G 1183 (1690)
.++|..+.++.+.| -.+-|..||.+++ .+..++ .|-++||+=-+-..|+|++++.-+++|+. ++.
T Consensus 37 ~lAwaLV~S~~~~d-----v~~GI~iLe~l~~~~~~~~r-------Re~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~ 102 (149)
T KOG3364|consen 37 NLAWALVRSRDTED-----VQEGIVILEDLLKSAHPERR-------RECLYYLAVGHYRLKEYSKSLRYVDALLE--TEP 102 (149)
T ss_pred HHHHHHHcccchHH-----HHHhHHHHHHHhhhcCcccc-------hhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCC
Confidence 39999999993332 3578999999997 553445 79999999999999999999999999998 777
Q ss_pred CCcccccHHHH
Q 000307 1184 NDRHSLFLSDI 1194 (1690)
Q Consensus 1184 ~sE~~lSLsKi 1194 (1690)
.|.--+.|.+.
T Consensus 103 ~n~Qa~~Lk~~ 113 (149)
T KOG3364|consen 103 NNRQALELKET 113 (149)
T ss_pred CcHHHHHHHHH
Confidence 77633344333
No 270
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=50.58 E-value=71 Score=39.77 Aligned_cols=115 Identities=17% Similarity=0.219 Sum_probs=81.7
Q ss_pred hhhHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH------------HHHH-
Q 000307 1049 LEGMKKALSLLSRALEADPTSE------ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA------------LWLM- 1109 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEINPtSA------eaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~------------Lw~m- 1109 (1690)
.+.+.+||..|..|+.+--+.. -+++-++.+|-+.+.-+++.-+..+|.++. .||. |..|
T Consensus 135 ls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv-~s~~l~d~~~kyr~~~lyhma 213 (518)
T KOG1941|consen 135 LSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELV-NSYGLKDWSLKYRAMSLYHMA 213 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHH-HhcCcCchhHHHHHHHHHHHH
Confidence 4667888888888877643322 367889999999999999999999999998 6776 2222
Q ss_pred -HHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHH
Q 000307 1110 -YINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRI 1173 (1690)
Q Consensus 1110 -YINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL 1173 (1690)
-++...++.|..+.|++|.+.=-++ +|+--. .--++.|+++|.-.|+.+-|..++
T Consensus 214 ValR~~G~LgdA~e~C~Ea~klal~~-----Gdra~~----arc~~~~aDIyR~~gd~e~af~rY 269 (518)
T KOG1941|consen 214 VALRLLGRLGDAMECCEEAMKLALQH-----GDRALQ----ARCLLCFADIYRSRGDLERAFRRY 269 (518)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHh-----CChHHH----HHHHHHHHHHHHhcccHhHHHHHH
Confidence 2344568888888899988755333 554111 224567888888888888765543
No 271
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=49.64 E-value=19 Score=35.46 Aligned_cols=57 Identities=9% Similarity=0.003 Sum_probs=44.1
Q ss_pred hhhHHHHHHHHHHHHHhCCC----C-----HHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH
Q 000307 1049 LEGMKKALSLLSRALEADPT----S-----EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1105 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEINPt----S-----AeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~ 1105 (1690)
.++|..|++.|.++++.-.. . ..++..++.+....+..++|.+.++.||+++-.+-+
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D 76 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGD 76 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC
Confidence 46788887777777765433 2 467788899999999999999999999998854443
No 272
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=49.30 E-value=82 Score=36.97 Aligned_cols=167 Identities=12% Similarity=0.031 Sum_probs=91.7
Q ss_pred hcchHHHHHHHHHHHHh-CCCcchh----HHHHHHHhhccCCCccHHHHHHHHHhCCCCCc-hhHHHHHHHHHHHHhcCC
Q 000307 1294 LNGLECSMNLLEKYIKL-YPSCLEL----VLMKARLQKHDFGDLSSVGFEEALIKWPKGVP-GIQCIWNQYVEYALQNGR 1367 (1690)
Q Consensus 1294 lEdse~al~LfdklLe~-~P~d~eL----~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~-g~qcaW~QLiq~Al~~e~ 1367 (1690)
.++.+..+....++++. .|.+... .|-.+| |+....-+..|..+-++.-++.. |.. -..+++...-.+ =
T Consensus 14 ~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvay---Kn~i~~~R~s~R~i~sie~ke~~~~~~-~~~~~~~~yr~k-i 88 (244)
T smart00101 14 AERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAY---KNVIGARRASWRIISSIEQKEESRGNE-DHVASIKEYRGK-I 88 (244)
T ss_pred hcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHH---hhhhcccHHHHHHHhHHHHhhhccCch-HHHHHHHHHHHH-H
Confidence 56888888888888887 4544444 444444 33233445777777766665322 110 122334333322 3
Q ss_pred hhHHHHHHHHHHHHHhhhcccccccchhhcccCCCCCCCCCC-----CCCcccccccccchhhhhHHHHHHHHH-hhhcC
Q 000307 1368 HDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTS-----TSDPEFSVSNRNQMDVMFGYLNLSLHR-LLQND 1441 (1690)
Q Consensus 1368 ~d~ai~L~~~ff~gia~~Q~~~deALD~lr~g~s~i~~es~s-----~~vSDfy~~~~~Q~d~~fa~LGD~Lyq-~Lqg~ 1441 (1690)
-+++..+|.. .+++++....+-.....+ .+..|+| -||..+-.. -.+.-
T Consensus 89 e~EL~~iC~e--------------il~lid~~Lip~~~~~eskVFy~KmKGDYy-----------RYlaE~~~~~e~~~~ 143 (244)
T smart00101 89 ETELSKICDG--------------ILKLLESHLIPSASAAESKVFYLKMKGDYH-----------RYLAEFKTGAERKEA 143 (244)
T ss_pred HHHHHHHHHH--------------HHHHHHHhCccccCcHHHHHHHHHHHHHHH-----------HHHHHHcCcHHHHHH
Confidence 4566777744 555555333222110000 0233433 344332111 00122
Q ss_pred hHHHHHHHHHHHhhc-----c-CCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHH
Q 000307 1442 WNEARLAIDAALKAA-----A-SEHFKHCVREHAMLLLINESEPKEGAPISWQLKLL 1492 (1690)
Q Consensus 1442 ~~EAf~AYDkALk~n-----p-~N~~i~cLNNYAYFLSle~~dL~KAEqMS~~~KtV 1492 (1690)
.+.|..||++|+..+ | .-...+...||++|+-.--.+-.+|.++.. +++
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk--~af 198 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAK--QAF 198 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH--HHH
Confidence 568899999999753 3 233467889999999877777888888777 655
No 273
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=48.84 E-value=1.2e+02 Score=31.16 Aligned_cols=44 Identities=9% Similarity=0.154 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHH
Q 000307 1050 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFS 1094 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfe 1094 (1690)
+....++..|.+++..++.++.+.-.|+.+|.... +....+++.
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~ 64 (140)
T smart00299 21 NLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLD 64 (140)
T ss_pred CcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHH
Confidence 34678889999999999988888888998887653 334445555
No 274
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=48.82 E-value=76 Score=37.00 Aligned_cols=69 Identities=17% Similarity=0.106 Sum_probs=59.8
Q ss_pred HHHhcccc--CchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHH
Q 000307 1039 LLILNQDA--NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALW 1107 (1690)
Q Consensus 1039 l~~Lnq~~--n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw 1107 (1690)
..|.|-.+ -+.+....|++--++|||+||+..-|+---+.+|.++...+++.+-|.+-.+.+|.+..+-
T Consensus 135 Ily~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear 205 (271)
T KOG4234|consen 135 ILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAR 205 (271)
T ss_pred HHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHH
Confidence 33444433 4678889999999999999999999999999999999999999999999999999887743
No 275
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.87 E-value=7.6e+02 Score=34.35 Aligned_cols=233 Identities=13% Similarity=0.137 Sum_probs=122.9
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHH
Q 000307 1073 WITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDL 1152 (1690)
Q Consensus 1073 Wyeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDv 1152 (1690)
|+.|.-+|+.++.-++|++.+..++.... +..+. ....+++-|+.+..+...+ +|+
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~--------~~d~~-----~~~~~e~ii~YL~~l~~~~-----------~~L 562 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDS--------DTDSF-----QLDGLEKIIEYLKKLGAEN-----------LDL 562 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhcccc--------ccccc-----hhhhHHHHHHHHHHhcccc-----------hhH
Confidence 56667777777777777777777776552 11111 2234555556554443332 688
Q ss_pred HHHHHHHHhhhcCHHHHHHHHHhhcccccCC-CCcccccHHHHHHHhccCCccch-----hHHHHH-------HHhhccc
Q 000307 1153 FLQMLQCFCMSGNTEKAIQRISRLLIPATGS-NDRHSLFLSDILTCLTISDKLIF-----WVCCVY-------LVIYRKL 1219 (1690)
Q Consensus 1153 LL~LvqLY~qSGnydKAI~tL~rLEq~Al~G-~sE~~lSLsKi~~YLt~sDkc~A-----wLc~iY-------dl~YrvL 1219 (1690)
++...+.-+.... +.+|+ |+.- -+. ..+ .++=.+|..|+-..++.++ ||.-.. -..|-.+
T Consensus 563 i~~y~~wvl~~~p-~~gi~----Ift~-~~~~~~~-sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~l 635 (877)
T KOG2063|consen 563 ILEYADWVLNKNP-EAGIQ----IFTS-EDKQEAE-SISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKL 635 (877)
T ss_pred HHHHhhhhhccCc-hhhee----eeec-cChhhhc-cCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHH
Confidence 8888777765544 44666 5531 000 123 5667799999999999988 555443 2233333
Q ss_pred cHHHHh-hc---cchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHH-----HH----H
Q 000307 1220 PDAVLQ-LL---ECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCF-----AV----N 1286 (1690)
Q Consensus 1220 PGd~y~-qn---e~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~t-----KL----N 1286 (1690)
.+.-.+ +. ++-+|+... . =.+-++.+.+. .++|.. +..+..-.....-..- ++ .
T Consensus 636 y~e~v~~~~~~~~kg~e~~E~---~------~rekl~~~l~~-s~~Y~p---~~~L~~~~~~~l~ee~aill~rl~khe~ 702 (877)
T KOG2063|consen 636 YLEKVLEQASTDGKGEEAPET---T------VREKLLDFLES-SDLYDP---QLLLERLNGDELYEERAILLGRLGKHEE 702 (877)
T ss_pred HHHHHhhccCchhccccchhh---h------HHHHHHHHhhh-hcccCc---chhhhhccchhHHHHHHHHHhhhhhHHH
Confidence 333333 11 111222222 0 12333444444 245543 2222111000000111 11 1
Q ss_pred HHHHHHH-hcchHHHHHHHHHHHHhCCCcchh--HHHHHHHhh-ccCCCccHHHHH------------HHHHhCCCCCc
Q 000307 1287 HIWCMAV-LNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQK-HDFGDLSSVGFE------------EALIKWPKGVP 1349 (1690)
Q Consensus 1287 ~IRq~I~-lEdse~al~LfdklLe~~P~d~eL--~L~AayL~~-k~m~e~Ai~vfe------------~aL~~~PkNa~ 1349 (1690)
.|--++- +.|...|..+|+...+.++.+-++ +|+.-|+.- ++.......... +++..=|++.+
T Consensus 703 aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~~~d~~~~~~~il~~l~~h~~r~d~~~~~~~Lp~~~s 781 (877)
T KOG2063|consen 703 ALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNPIHDYKSGPLYILNFLQKHADRLDLAQVLKLLPDDIS 781 (877)
T ss_pred HHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcchhhccccchhhhhHHHhhhhhcCHHHHHHhCCccCc
Confidence 1222333 559999999999999977767787 777777766 222223333333 56777788877
No 276
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=47.47 E-value=48 Score=38.08 Aligned_cols=63 Identities=21% Similarity=0.276 Sum_probs=50.7
Q ss_pred HHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhh
Q 000307 1104 YALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRL 1176 (1690)
Q Consensus 1104 Y~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rL 1176 (1690)
..+|..|...+ +|++|+.+|+..+..+-.+. =..-+.+++..+.+|+...|+.+..|.+.=.|
T Consensus 182 ~~~A~ey~~~g--------~~~~A~~~l~~~~~~yr~eg--W~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLG--------DYDKALKLLEPAASSYRREG--WWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCC--------CHHHHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34899999999 99999999998876652222 34456899999999999999999999876433
No 277
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=47.12 E-value=2.3e+02 Score=33.12 Aligned_cols=133 Identities=13% Similarity=-0.079 Sum_probs=99.8
Q ss_pred CchHHHHHHHHHhcCCCCHH---HHHHHHhcCCCcccchHHHHHHHHHHHHhhhc-CCCCcchhhhhhHHHHHHHHHHHh
Q 000307 1086 SVGKDDMFSYSVKHNEGSYA---LWLMYINSRTPLNHRLDAYDAALSVLCRCASA-SDGDEMHASACILDLFLQMLQCFC 1161 (1690)
Q Consensus 1086 ~~ea~emfekAVelaP~NY~---Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~-~~pDr~~~Sa~ILDvLL~LvqLY~ 1161 (1690)
++-...-..++++-+|-+-. |+.-....+ .|.+|...|++-.++ +-.| --+||-+++-.-
T Consensus 72 P~R~~Rea~~~~~~ApTvqnr~rLa~al~elG--------r~~EA~~hy~qalsG~fA~d--------~a~lLglA~Aqf 135 (251)
T COG4700 72 PERHLREATEELAIAPTVQNRYRLANALAELG--------RYHEAVPHYQQALSGIFAHD--------AAMLLGLAQAQF 135 (251)
T ss_pred hhHHHHHHHHHHhhchhHHHHHHHHHHHHHhh--------hhhhhHHHHHHHhccccCCC--------HHHHHHHHHHHH
Confidence 44444445566777775544 888888999 999999999886664 4233 468999999999
Q ss_pred hhcCHHHHHHHHHhhcccccCCCCcccccHHHHHHHhccCCccch-----hHHHHH-HHhhccccHHHHhhccchhhhhc
Q 000307 1162 MSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIF-----WVCCVY-LVIYRKLPDAVLQLLECEKELFA 1235 (1690)
Q Consensus 1162 qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~A-----wLc~iY-dl~YrvLPGd~y~qne~~KEAf~ 1235 (1690)
-.++...|..+|+.|...-..+-++ +-.|-=-+.|-+.+...-| |+..-| ...=+.+.+.|+..-|+..|+=.
T Consensus 136 a~~~~A~a~~tLe~l~e~~pa~r~p-d~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 136 AIQEFAAAQQTLEDLMEYNPAFRSP-DGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred hhccHHHHHHHHHHHhhcCCccCCC-CchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHH
Confidence 9999999999999999866777777 6666667777777766655 888877 66666677777777776666533
No 278
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=45.53 E-value=46 Score=38.22 Aligned_cols=70 Identities=23% Similarity=0.229 Sum_probs=38.8
Q ss_pred ccccchhhhh------hhhhch--hhhHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCC----HHHHHHHHHHH
Q 000307 1013 FFRSRNGVLN------KLKQVE--LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS----EILWITYLLIF 1080 (1690)
Q Consensus 1013 YF~~~~d~in------~Le~~~--~d~qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtS----AeaWyeyl~lY 1080 (1690)
|.|++.++.. ++|..+ .+.++=..||-.|...+. ++|+.+|-|+|+..+.+ ++++.-++.+|
T Consensus 115 y~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~------~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~ 188 (203)
T PF11207_consen 115 YHWSRFGDQEALRRFLQLEGTPELETAELQYALATYYTKRDP------EKTIQLLLRALELSNPDDNFNPEILKSLASIY 188 (203)
T ss_pred HHhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCH------HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 4456655532 344333 444555555555554322 55666666666665553 66666666666
Q ss_pred HhCCCCch
Q 000307 1081 YSNTNSVG 1088 (1690)
Q Consensus 1081 ~~~~~~~e 1088 (1690)
++.++.+.
T Consensus 189 ~~~~~~e~ 196 (203)
T PF11207_consen 189 QKLKNYEQ 196 (203)
T ss_pred HHhcchhh
Confidence 66665554
No 279
>PF12854 PPR_1: PPR repeat
Probab=45.40 E-value=29 Score=28.62 Aligned_cols=26 Identities=12% Similarity=0.477 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHhh
Q 000307 1151 DLFLQMLQCFCMSGNTEKAIQRISRL 1176 (1690)
Q Consensus 1151 DvLL~LvqLY~qSGnydKAI~tL~rL 1176 (1690)
=++-.|++.||..|++++|++.++++
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 46778999999999999999977765
No 280
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=44.56 E-value=1.7e+02 Score=36.06 Aligned_cols=131 Identities=15% Similarity=0.080 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHh--CCCCchHHHHHHHHHhcCCCCHHHH
Q 000307 1032 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEI--LWITYLLIFYS--NTNSVGKDDMFSYSVKHNEGSYALW 1107 (1690)
Q Consensus 1032 qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAe--aWyeyl~lY~~--~~~~~ea~emfekAVelaP~NY~Lw 1107 (1690)
++=++.|...+|. ++|.+|..+|..+++--|.... .+..+...|.. +-.-.+|.+.|++..+..-. |+
T Consensus 132 ~~~~~~a~~l~n~-----~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~---l~ 203 (379)
T PF09670_consen 132 DREWRRAKELFNR-----YDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKA---LN 203 (379)
T ss_pred HHHHHHHHHHHhc-----CCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhh---hH
Confidence 3445556666655 7899999999999985344443 55555555543 33466777888877766422 11
Q ss_pred HHHHhcCCCcccchHHHHHHHHHHHHhhhcCC--CCc-chhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1108 LMYINSRTPLNHRLDAYDAALSVLCRCASASD--GDE-MHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1108 ~mYINsr~s~ddrl~aYdrAI~aLe~las~~~--pDr-~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
...-..+ ...+.+..+........ ..+ ++....++.-|+..++==..+|+|+.|+.+++|+..
T Consensus 204 ~~~~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lE 269 (379)
T PF09670_consen 204 QEREGLK--------ELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALE 269 (379)
T ss_pred hHHHHHH--------HHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 1111111 22233333322222110 111 111445555566666555668889999999999984
No 281
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=43.97 E-value=2.4e+02 Score=33.12 Aligned_cols=159 Identities=15% Similarity=0.066 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCH--HHHHHHHHhhcccccCCCCcccccHHHHHHHhcc
Q 000307 1123 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNT--EKAIQRISRLLIPATGSNDRHSLFLSDILTCLTI 1200 (1690)
Q Consensus 1123 aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGny--dKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~ 1200 (1690)
.|++||++|..-+...=. ..+-.+-.|+.++|++.|...+.- +..+.+|-.|... +....+ .. .+.
T Consensus 5 ky~eAidLL~~Ga~~ll~--~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~-~~~~~p---~r------~~f 72 (260)
T PF04190_consen 5 KYDEAIDLLYSGALILLK--HGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISL-FPPEEP---ER------KKF 72 (260)
T ss_dssp -HHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHH-S-TT-T---TH------HHH
T ss_pred cHHHHHHHHHHHHHHHHH--CCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-CCCCcc---hH------HHH
Confidence 899999999776554311 124557789999999999998742 2334555555531 111222 11 111
Q ss_pred CCccchhHH---HHH-HHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhhc
Q 000307 1201 SDKLIFWVC---CVY-LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETN 1276 (1690)
Q Consensus 1201 sDkc~AwLc---~iY-dl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~n 1276 (1690)
=++++.|-. +.+ +...+.+.|..|-..+...+|-.- + ++.++|+-....+-+ ...+.. +.
T Consensus 73 i~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H---f--l~~~~~~~~~~~~ll-~~~~~~--~~-------- 136 (260)
T PF04190_consen 73 IKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERH---F--LLGTDPSAFAYVMLL-EEWSTK--GY-------- 136 (260)
T ss_dssp HHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHH---H--HTS-HHHHHHHHHHH-HHHHHH--TS--------
T ss_pred HHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHH---H--HhcCChhHHHHHHHH-HHHHHh--cC--------
Confidence 234444661 223 788888888888877766666221 0 234555554442222 233322 21
Q ss_pred ccchh-HHHHHHHHHHHHhcchHHHHHHHHHHHHh
Q 000307 1277 LRSAH-CFAVNHIWCMAVLNGLECSMNLLEKYIKL 1310 (1690)
Q Consensus 1277 ~k~d~-~tKLN~IRq~I~lEdse~al~LfdklLe~ 1310 (1690)
..+. -+-...+.+|..+.+...|..+|+.+++.
T Consensus 137 -~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 137 -PSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp -S--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred -CcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 1112 23335566666677888888888888876
No 282
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.03 E-value=3.2e+02 Score=37.54 Aligned_cols=52 Identities=15% Similarity=0.333 Sum_probs=41.3
Q ss_pred HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhh
Q 000307 1106 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRL 1176 (1690)
Q Consensus 1106 Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rL 1176 (1690)
+|.+|+..+ .|++|++ .++..|| ++.=||+.-+++|-+.++|..|-+.+...
T Consensus 364 vWk~yLd~g--------~y~kAL~-----~ar~~p~------~le~Vl~~qAdf~f~~k~y~~AA~~yA~t 415 (911)
T KOG2034|consen 364 VWKTYLDKG--------EFDKALE-----IARTRPD------ALETVLLKQADFLFQDKEYLRAAEIYAET 415 (911)
T ss_pred HHHHHHhcc--------hHHHHHH-----hccCCHH------HHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 999999999 9999998 2333244 34668899999999999999997755443
No 283
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=42.01 E-value=30 Score=40.87 Aligned_cols=65 Identities=17% Similarity=0.136 Sum_probs=45.1
Q ss_pred CccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHH------------HHHHHhhhcc-cccccchhhc
Q 000307 1331 DLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR------------WFHSVWKVQY-SQVEISDPLV 1397 (1690)
Q Consensus 1331 e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~------------ff~gia~~Q~-~~deALD~lr 1397 (1690)
++|+..|-+||.++|..+. -|--=+..-++-++|+.+..-|++ ||+|-|..|. .+++|+..|+
T Consensus 27 ~~ai~~y~raI~~nP~~~~----Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 27 DDAIDCYSRAICINPTVAS----YYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ 102 (284)
T ss_pred chHHHHHHHHHhcCCCcch----hhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 4677777788888887777 333334444445677777777776 8888777776 7777777777
Q ss_pred cc
Q 000307 1398 AD 1399 (1690)
Q Consensus 1398 ~g 1399 (1690)
+.
T Consensus 103 ra 104 (284)
T KOG4642|consen 103 RA 104 (284)
T ss_pred HH
Confidence 66
No 284
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=41.32 E-value=34 Score=40.04 Aligned_cols=44 Identities=18% Similarity=0.290 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHH
Q 000307 1123 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRIS 1174 (1690)
Q Consensus 1123 aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~ 1174 (1690)
...+||.+..+.++.. |.. .+.--.++||||..|+|+||+.-++
T Consensus 16 sL~dai~~a~~qVkak-Ptd-------a~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 16 SLQDAIGLARDQVKAK-PTD-------AGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred cHHHHHHHHHHHHhcC-Ccc-------ccchhHHHHHHhhcchHHHHHHHHH
Confidence 6689999999999998 666 5667789999999999999987554
No 285
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=40.59 E-value=1.1e+02 Score=37.02 Aligned_cols=91 Identities=13% Similarity=0.033 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCcchhHHHH--HHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHH
Q 000307 1281 HCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMK--ARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQY 1358 (1690)
Q Consensus 1281 ~~tKLN~IRq~I~lEdse~al~LfdklLe~~P~d~eL~L~A--ayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QL 1358 (1690)
.+.++-+.+||+...+++.+..+++.+=.....+.-..|.+ ..+..-. ..+-...++..+..+|++.. ++++|
T Consensus 168 ~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa-~~~~~~~l~~~~aadPdd~~----aa~~l 242 (304)
T COG3118 168 SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAA-ATPEIQDLQRRLAADPDDVE----AALAL 242 (304)
T ss_pred chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHhCCCCHH----HHHHH
Confidence 45666777777775577777766554322222222222222 1111111 22334667888888888888 88888
Q ss_pred HHHHHhcCChhHHHHHHH
Q 000307 1359 VEYALQNGRHDFAAELMD 1376 (1690)
Q Consensus 1359 iq~Al~~e~~d~ai~L~~ 1376 (1690)
+......|+.+.|.+.+-
T Consensus 243 A~~~~~~g~~e~Ale~Ll 260 (304)
T COG3118 243 ADQLHLVGRNEAALEHLL 260 (304)
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 888888888888877763
No 286
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=40.20 E-value=70 Score=38.15 Aligned_cols=79 Identities=16% Similarity=0.094 Sum_probs=63.9
Q ss_pred hhhhchhhhHHHHHHHH----HHhccc--cCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 000307 1023 KLKQVELSNEQCVEMAL----LILNQD--ANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYS 1096 (1690)
Q Consensus 1023 ~Le~~~~d~qlWl~lAl----~~Lnq~--~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekA 1096 (1690)
+|+.-|.+ .-|++|+- .+||.- ....|.|=++++--+--|..+|++.-|||.-+.....-=+..+|.+-|.++
T Consensus 212 ~lkEkP~e-~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~v 290 (329)
T KOG0545|consen 212 QLKEKPGE-PEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKV 290 (329)
T ss_pred HhccCCCC-hHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 44444444 56999993 344444 367888888888888889999999999999999988888999999999999
Q ss_pred HhcCCC
Q 000307 1097 VKHNEG 1102 (1690)
Q Consensus 1097 VelaP~ 1102 (1690)
.+++|.
T Consensus 291 L~ldps 296 (329)
T KOG0545|consen 291 LELDPS 296 (329)
T ss_pred HhcChh
Confidence 999983
No 287
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=39.49 E-value=85 Score=39.41 Aligned_cols=57 Identities=18% Similarity=0.331 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCC--chHHHHHHHHHhcCCCCHHHH
Q 000307 1051 GMKKALSLLSRALEADPTSEILWITYLLIFYSNTNS--VGKDDMFSYSVKHNEGSYALW 1107 (1690)
Q Consensus 1051 ~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~--~ea~emfekAVelaP~NY~Lw 1107 (1690)
-+|.-+.++.-||.+||++=-+|++..-.-.+...+ ..-...|++|.+.+|.||.-|
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W 148 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAW 148 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccch
Confidence 357777888888888888888888888887766665 233467888888888888744
No 288
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=39.00 E-value=44 Score=39.80 Aligned_cols=56 Identities=20% Similarity=0.083 Sum_probs=52.2
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH
Q 000307 1050 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1105 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~ 1105 (1690)
++++.|+..-++-|..||.++.-|---+.+|.+++-...|.+-++..|++.|+.-.
T Consensus 195 ~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 195 LQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred hchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 56799999999999999999999999999999999999999999999999986544
No 289
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.70 E-value=19 Score=43.96 Aligned_cols=115 Identities=19% Similarity=0.172 Sum_probs=79.5
Q ss_pred hhhhHHHHHHHHHHHHHhhcCCcchhhhhcccchhHHHHHHHHHHHHhc-chHHHHHHHHHHHHhCCCcchh--HHHHHH
Q 000307 1247 EKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLN-GLECSMNLLEKYIKLYPSCLEL--VLMKAR 1323 (1690)
Q Consensus 1247 EPdnalAL~smA~dYY~~~~ndEsla~~~n~k~d~~tKLN~IRq~I~lE-dse~al~LfdklLe~~P~d~eL--~L~Aay 1323 (1690)
+|+....+ +|+ ++|.. +..|..... .+.|+.-+- ++++ .+..++.+|.+.++++|..+.| .=.+++
T Consensus 90 epd~d~pq-~MG-ds~~e-~Tee~~eqa------~e~k~~A~e--Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~ 158 (377)
T KOG1308|consen 90 EPDTDAPQ-EMG-DSNAE-ITEEMMDQA------NDKKVQASE--ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVF 158 (377)
T ss_pred ccCCCcch-hhc-hhhhh-hhHHHHHHH------HHHHHHHHH--HhcCcchhhhhcccccccccCCchhhhccccccee
Confidence 66666554 564 77765 443333332 344443111 1122 7899999999999999999999 667788
Q ss_pred HhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHH
Q 000307 1324 LQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1377 (1690)
Q Consensus 1324 L~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ 1377 (1690)
|..++ +..++.=|.-+++++|+-+.| +.|--++..++ ++|.++...++.
T Consensus 159 lkl~k-p~~airD~d~A~ein~Dsa~~--ykfrg~A~rll--g~~e~aa~dl~~ 207 (377)
T KOG1308|consen 159 LKLKK-PNAAIRDCDFAIEINPDSAKG--YKFRGYAERLL--GNWEEAAHDLAL 207 (377)
T ss_pred eeccC-CchhhhhhhhhhccCcccccc--cchhhHHHHHh--hchHHHHHHHHH
Confidence 99999 999999999999999999983 34555554443 477777776644
No 290
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=38.52 E-value=28 Score=28.61 Aligned_cols=23 Identities=4% Similarity=-0.045 Sum_probs=10.4
Q ss_pred HHHHHHHHHhCCCCchHHHHHHH
Q 000307 1073 WITYLLIFYSNTNSVGKDDMFSY 1095 (1690)
Q Consensus 1073 Wyeyl~lY~~~~~~~ea~emfek 1095 (1690)
|..++.+|.+.+.-++|.++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444444444444444444
No 291
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=38.51 E-value=2.7e+02 Score=33.70 Aligned_cols=90 Identities=12% Similarity=0.112 Sum_probs=65.0
Q ss_pred cccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHH----HHHhcCCCCHHHHHHHHhcCCCccc
Q 000307 1044 QDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFS----YSVKHNEGSYALWLMYINSRTPLNH 1119 (1690)
Q Consensus 1044 q~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfe----kAVelaP~NY~Lw~mYINsr~s~dd 1119 (1690)
....+.+.+-.|+.+|.++|..+|.+..+-..+.++|...|-.+.|.+.|. |-|+++-=+|.+..-+.... .+..
T Consensus 191 ~~~~~~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~~~~r~~~~~-~~~~ 269 (365)
T PF09797_consen 191 SKTKDSEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHLILDRLSTLG-PFKS 269 (365)
T ss_pred hccCCHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHHHHHHHhccC-cccc
Confidence 344678899999999999999999999999999999999999999988885 45666533333222222222 3333
Q ss_pred ch-HHHHHHHHHHHHh
Q 000307 1120 RL-DAYDAALSVLCRC 1134 (1690)
Q Consensus 1120 rl-~aYdrAI~aLe~l 1134 (1690)
-. ..++.++.+|...
T Consensus 270 ~~~~~~~~~~~fy~~~ 285 (365)
T PF09797_consen 270 APENLLENALKFYDNS 285 (365)
T ss_pred cchHHHHHHHHHHHHH
Confidence 33 6777777777444
No 292
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=38.26 E-value=74 Score=38.09 Aligned_cols=57 Identities=19% Similarity=0.239 Sum_probs=49.8
Q ss_pred HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1106 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1106 Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
++..|+..+ .|+.+++.+.++...+ |-. .....+|+..|.+.|+..+||..++++..
T Consensus 159 lae~~~~~~--------~~~~~~~~l~~Li~~d-p~~-------E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 159 LAEALIACG--------RADAVIEHLERLIELD-PYD-------EPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHhcc--------cHHHHHHHHHHHHhcC-ccc-------hHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 666677777 7888999998888887 666 79999999999999999999999999986
No 293
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.65 E-value=4.2e+02 Score=32.39 Aligned_cols=97 Identities=10% Similarity=0.012 Sum_probs=66.2
Q ss_pred hhhhhhHHHHHHHHHHHHHhhcCCcchhhhh--------cccchhHHHHHH---HHHHHH-hcchHHHHHHHHHHHHhCC
Q 000307 1245 DDEKQRAIKLIEMAVNSVELYSNGESLEKET--------NLRSAHCFAVNH---IWCMAV-LNGLECSMNLLEKYIKLYP 1312 (1690)
Q Consensus 1245 kdEPdnalAL~smA~dYY~~~~ndEsla~~~--------n~k~d~~tKLN~---IRq~I~-lEdse~al~LfdklLe~~P 1312 (1690)
+.+|.-.-+|++++|. .||+..++.. ++=....+++-. ++.+.+ ..+...+..-|++++...|
T Consensus 209 e~~p~L~s~Lgr~~MQ-----~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~ 283 (366)
T KOG2796|consen 209 EQEPQLLSGLGRISMQ-----IGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDP 283 (366)
T ss_pred cccHHHHHHHHHHHHh-----cccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCC
Confidence 3567777777777632 4554444332 111122333322 222222 3388999999999999999
Q ss_pred Ccchh----HHHHHHHhhccCCCccHHHHHHHHHhCCCCCc
Q 000307 1313 SCLEL----VLMKARLQKHDFGDLSSVGFEEALIKWPKGVP 1349 (1690)
Q Consensus 1313 ~d~eL----~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~ 1349 (1690)
.++.- .|+-.|+..-. +|+++.+.++.+.|.-.-
T Consensus 284 ~~~~a~NnKALcllYlg~l~---DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 284 RNAVANNNKALCLLYLGKLK---DALKQLEAMVQQDPRHYL 321 (366)
T ss_pred CchhhhchHHHHHHHHHHHH---HHHHHHHHHhccCCccch
Confidence 99988 88888887776 999999999999998766
No 294
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=35.65 E-value=42 Score=25.41 Aligned_cols=26 Identities=15% Similarity=0.443 Sum_probs=23.3
Q ss_pred HHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1153 FLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1153 LL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
+..|++.|++.|++++|...+.++..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 56789999999999999999998874
No 295
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.05 E-value=7.8e+02 Score=30.68 Aligned_cols=110 Identities=15% Similarity=0.075 Sum_probs=68.5
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHH----hcCCCCHHHHHHHHhcCCCcccchHH
Q 000307 1048 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSV----KHNEGSYALWLMYINSRTPLNHRLDA 1123 (1690)
Q Consensus 1048 ~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAV----elaP~NY~Lw~mYINsr~s~ddrl~a 1123 (1690)
+.|+|++|+.-|+-||+.--=.+-+-|.++...+++++...|+++.+.-| +.-|. ++-+..-++-++.
T Consensus 156 kegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPE--------lgIGm~tegiDvr 227 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPE--------LGIGMTTEGIDVR 227 (459)
T ss_pred ccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCc--------cCccceeccCchh
Confidence 45889999999999999999999999999999999999888876655544 43331 1122111111110
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1124 YDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1124 YdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
.-++ +-..|.|+ |++.|..-+-.|-+.||++.|-..|-.+-+
T Consensus 228 -----------svgN-t~~lh~Sa-l~eAfNLKaAIeyq~~n~eAA~eaLtDmPP 269 (459)
T KOG4340|consen 228 -----------SVGN-TLVLHQSA-LVEAFNLKAAIEYQLRNYEAAQEALTDMPP 269 (459)
T ss_pred -----------cccc-hHHHHHHH-HHHHhhhhhhhhhhcccHHHHHHHhhcCCC
Confidence 1111 22233443 345555556666677777766666655544
No 296
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=33.34 E-value=63 Score=24.65 Aligned_cols=26 Identities=19% Similarity=0.537 Sum_probs=23.4
Q ss_pred HHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1153 FLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1153 LL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
+-.|+..|+..|++++|+..+.++..
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56789999999999999999999884
No 297
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=32.38 E-value=85 Score=35.86 Aligned_cols=73 Identities=21% Similarity=0.198 Sum_probs=54.0
Q ss_pred HHHHHHHHHH--hccccCchhhHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCC
Q 000307 1032 EQCVEMALLI--LNQDANKLEGMKKALSLLSRALEADPT------SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1103 (1690)
Q Consensus 1032 qlWl~lAl~~--Lnq~~n~~g~yDAALdLLsrALEINPt------SAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~N 1103 (1690)
-+||++|-.+ ++.+.+-..-+..|+..|..|++.... ...+.|.++.++++.|+.++|...|.+.+..--.+
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 6788888443 333335556688999999999987644 25688888888888888888888888888776444
Q ss_pred H
Q 000307 1104 Y 1104 (1690)
Q Consensus 1104 Y 1104 (1690)
-
T Consensus 199 ~ 199 (214)
T PF09986_consen 199 K 199 (214)
T ss_pred C
Confidence 3
No 298
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=31.87 E-value=78 Score=37.30 Aligned_cols=59 Identities=14% Similarity=0.022 Sum_probs=51.3
Q ss_pred CchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH
Q 000307 1047 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1105 (1690)
Q Consensus 1047 n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~ 1105 (1690)
.+.|=.+-|-.=|+++|.|+|.=|+++-.++.|+..-++-..+.+.|-.-.+++|.+-.
T Consensus 76 DSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Y 134 (297)
T COG4785 76 DSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY 134 (297)
T ss_pred hhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchH
Confidence 35566677778899999999999999999999999999999999999999999986443
No 299
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=31.69 E-value=54 Score=26.24 Aligned_cols=28 Identities=0% Similarity=-0.081 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHhc
Q 000307 1072 LWITYLLIFYSNTNSVGKDDMFSYSVKH 1099 (1690)
Q Consensus 1072 aWyeyl~lY~~~~~~~ea~emfekAVel 1099 (1690)
++..++.+|+.++...+|..++++|++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4455555555565555555555555543
No 300
>KOG4147 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.72 E-value=35 Score=35.92 Aligned_cols=42 Identities=29% Similarity=0.412 Sum_probs=31.8
Q ss_pred ccCCCCccccCCCcccccccccccccCCCCCCCCCCCCCceEEEecCCC
Q 000307 35 VDIQPRNTTQSNSLKSFEQNRVTFKSNTPGWFPSSGKNDNLVISFSDDD 83 (1690)
Q Consensus 35 ~~~~~r~~~q~~~~k~~~kn~v~~~s~~~~~~~~~g~~~nlvi~fsddd 83 (1690)
.|||.|+|.-|--+--|+-=.+=++ |+-..-+||||+|-+||
T Consensus 45 ~~Iq~~~sl~pfRn~kfDtLKIy~~-------Ah~sKT~nLvinldhDd 86 (127)
T KOG4147|consen 45 QDIQLRTSLPPFRNYKFDTLKIYHQ-------AHKSKTNNLVINLDHDD 86 (127)
T ss_pred HhcccCCCCCccccccccceeeehh-------hhhcccceEEEeccCCc
Confidence 4799999998876667765444333 46678899999999887
No 301
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.70 E-value=1.4e+02 Score=39.06 Aligned_cols=137 Identities=18% Similarity=0.189 Sum_probs=84.7
Q ss_pred HHhCCCCchHHHHHHHHHhcCCCCHHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHH
Q 000307 1080 FYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQC 1159 (1690)
Q Consensus 1080 Y~~~~~~~ea~emfekAVelaP~NY~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqL 1159 (1690)
|-.....++++.+|..||+--+.|=. +..| .+ + |=- +|.||+|++.
T Consensus 248 ~~hs~sYeqaq~~F~~av~~~d~n~v----------------------~~lL---~s-s-PYH-------vdsLLqva~~ 293 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIVHDPNNV----------------------LILL---IS-S-PYH-------VDSLLQVADI 293 (665)
T ss_pred eecchHHHHHHHHHHHHHhhcCCcce----------------------eeee---cc-C-Ccc-------hhHHHHHHHH
Confidence 45556677888888888876544421 1111 11 1 333 9999999999
Q ss_pred HhhhcCHHHHHHHHHhhc----ccccCCCCcccccHHHHHHHhccCCccchhHHHHHHHhhccccHHHHhhccchhhhhc
Q 000307 1160 FCMSGNTEKAIQRISRLL----IPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFA 1235 (1690)
Q Consensus 1160 Y~qSGnydKAI~tL~rLE----q~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLc~iYdl~YrvLPGd~y~qne~~KEAf~ 1235 (1690)
..|+|+.+.|-.-|.|-+ .....--++ .+..--.-|.-..+|.. |+..||-|. -+.+.||..-|+.
T Consensus 294 ~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~--~sg~cRL~y~~~eNR~F------yL~l~r~m~--~l~~RGC~rTA~E 363 (665)
T KOG2422|consen 294 FRFQGDREMAADLIERGLYVFDRALHPNFIP--FSGNCRLPYIYPENRQF------YLALFRYMQ--SLAQRGCWRTALE 363 (665)
T ss_pred HHHhcchhhHHHHHHHHHHHHHHHhcccccc--ccccccCcccchhhHHH------HHHHHHHHH--HHHhcCChHHHHH
Confidence 999999887765443322 100000000 00001112222222222 366666664 4677899999999
Q ss_pred CCCCCcccchhhhh-hHHHHHHHHHHHHHh
Q 000307 1236 IDWPPVQLEDDEKQ-RAIKLIEMAVNSVEL 1264 (1690)
Q Consensus 1236 I~W~yvqvlkdEPd-nalAL~smA~dYY~~ 1264 (1690)
. +.-+++-||. +++++... +|+|..
T Consensus 364 ~---cKlllsLdp~eDPl~~l~~-ID~~AL 389 (665)
T KOG2422|consen 364 W---CKLLLSLDPSEDPLGILYL-IDIYAL 389 (665)
T ss_pred H---HHHHhhcCCcCCchhHHHH-HHHHHH
Confidence 8 8888999999 99999999 899985
No 302
>PF13041 PPR_2: PPR repeat family
Probab=30.55 E-value=99 Score=26.72 Aligned_cols=33 Identities=12% Similarity=0.348 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCcc
Q 000307 1152 LFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRH 1187 (1690)
Q Consensus 1152 vLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~ 1187 (1690)
.+-.|++.|++.|++++|++.++++. ..|..+.
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~---~~g~~P~ 37 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMK---KRGIKPD 37 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHH---HcCCCCC
Confidence 46679999999999999999999999 5677774
No 303
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=30.47 E-value=3.4e+02 Score=30.29 Aligned_cols=80 Identities=14% Similarity=-0.016 Sum_probs=59.4
Q ss_pred chHHHHHHHHHHHHhCCCcchh-HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHH
Q 000307 1296 GLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAEL 1374 (1690)
Q Consensus 1296 dse~al~LfdklLe~~P~d~eL-~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L 1374 (1690)
+...++++|.+.+.++|..+.. -=-+.-+..++-+++|+.-++++|++.-+...-.+-++-|-.-.+--.++-|.|..-
T Consensus 58 ~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~D 137 (175)
T KOG4555|consen 58 DLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARAD 137 (175)
T ss_pred chHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHh
Confidence 8999999999999999999998 555555666666889999999999998777664444555544444445566665444
Q ss_pred H
Q 000307 1375 M 1375 (1690)
Q Consensus 1375 ~ 1375 (1690)
.
T Consensus 138 F 138 (175)
T KOG4555|consen 138 F 138 (175)
T ss_pred H
Confidence 3
No 304
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=30.14 E-value=1.8e+02 Score=30.91 Aligned_cols=54 Identities=24% Similarity=0.293 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhCCCCc-----------hHHHHHHHHHhcCCCC
Q 000307 1050 EGMKKALSLLSRALEADPTSE---ILWITYLLIFYSNTNSV-----------GKDDMFSYSVKHNEGS 1103 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPtSA---eaWyeyl~lY~~~~~~~-----------ea~emfekAVelaP~N 1103 (1690)
|++-+||.+..-.+-.++++. .+...-+.+|+.+.... ++.+.|++|+.+.|++
T Consensus 10 GnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~ 77 (111)
T PF04781_consen 10 GNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS 77 (111)
T ss_pred cCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH
Confidence 889999999999999999988 45556677777665532 3458899999999877
No 305
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=29.38 E-value=96 Score=28.62 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=27.8
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHHHhhccCCcHHHHH
Q 000307 1429 YLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCV 1465 (1690)
Q Consensus 1429 ~LGD~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cL 1465 (1690)
+|...+|+ .|++++|....|.+|+.-|+| .++.
T Consensus 6 ~lAig~yk--l~~Y~~A~~~~~~lL~~eP~N--~Qa~ 38 (53)
T PF14853_consen 6 YLAIGHYK--LGEYEKARRYCDALLEIEPDN--RQAQ 38 (53)
T ss_dssp HHHHHHHH--TT-HHHHHHHHHHHHHHTTS---HHHH
T ss_pred HHHHHHHH--hhhHHHHHHHHHHHHhhCCCc--HHHH
Confidence 67888999 999999999999999999999 5554
No 306
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=28.55 E-value=1.5e+02 Score=35.75 Aligned_cols=53 Identities=15% Similarity=0.175 Sum_probs=47.7
Q ss_pred CchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhc
Q 000307 1047 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKH 1099 (1690)
Q Consensus 1047 n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVel 1099 (1690)
-+-++++++...|.+-++.+|.+..+|+.+...|++.+....+...|+..-+.
T Consensus 164 ~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 164 IACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 34577999999999999999999999999999999999999999888887763
No 307
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=28.54 E-value=3.5e+02 Score=26.74 Aligned_cols=81 Identities=22% Similarity=0.289 Sum_probs=53.5
Q ss_pred HHHhcCChhHHHHHHHHHHHHHhhhcc-cccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhh
Q 000307 1361 YALQNGRHDFAAELMDRWFHSVWKVQY-SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQ 1439 (1690)
Q Consensus 1361 ~Al~~e~~d~ai~L~~~ff~gia~~Q~-~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lq 1439 (1690)
.+|..+++..+++-+.+||.-. .-+. ... ....-++.|+....+...
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~-~~~~~~~~-------------------------------~~~~~~all~lA~~~~~~ 54 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYA-KQSNNSSS-------------------------------NSGLAYALLNLAELHRRF 54 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHH-hhcccchh-------------------------------hHHHHHHHHHHHHHHHHh
Confidence 4788899999999998877431 1111 110 011123777775555558
Q ss_pred cChHHHHHHHHHHHhhccCCcHHHHHHHHHHHHh
Q 000307 1440 NDWNEARLAIDAALKAAASEHFKHCVREHAMLLL 1473 (1690)
Q Consensus 1440 g~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLS 1473 (1690)
|..++|..+++.|+..+-.+.=..||+-....+.
T Consensus 55 G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~~ 88 (94)
T PF12862_consen 55 GHYEEALQALEEAIRLARENGDRRCLAYALSWLA 88 (94)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 9999999999999998884333677766555443
No 308
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=28.45 E-value=2.3e+02 Score=39.17 Aligned_cols=220 Identities=17% Similarity=0.148 Sum_probs=122.0
Q ss_pred HHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHH---HHHHHHHHhcCChhHHHHHHHHHHHHHhhhcccccccchh
Q 000307 1319 LMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIW---NQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDP 1395 (1690)
Q Consensus 1319 L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW---~QLiq~Al~~e~~d~ai~L~~~ff~gia~~Q~~~deALD~ 1395 (1690)
+=.|+|.-|. -+.|+.-|..+-.--|..+.|.-..+ .-+++-|=+.++. ...++||+.
T Consensus 481 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~ 541 (932)
T PRK13184 481 VPDAFLAEKL-YDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDP------------------RDFTQALSE 541 (932)
T ss_pred CcHHHHhhHH-HHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCCh------------------HHHHHHHHH
Confidence 3345555555 55666666666666676666444333 1222222222221 145667777
Q ss_pred hcccCCCCCCCCCCCCCcccccccccchhhhhHHHHH--HHHHhhhcChHHHHHHHHHHHhhccCCcHHHHHHHHHHHHh
Q 000307 1396 LVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNL--SLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLL 1473 (1690)
Q Consensus 1396 lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD--~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLS 1473 (1690)
|.+..... +--+ .|||- .|.. .|+++|-...|+-||+--|..-.+.-|++|..|=.
T Consensus 542 ~~~~~~~~---------~~~~-----------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (932)
T PRK13184 542 FSYLHGGV---------GAPL-----------EYLGKALVYQR--LGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRL 599 (932)
T ss_pred HHHhcCCC---------CCch-----------HHHhHHHHHHH--hhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 77653322 1124 77887 5566 78999999999999999886555999999998854
Q ss_pred cCCCCCCcccchhhhHHHHHHHHhh---hcccccccc--cchhhhccccchhhHHHHhhhcC--CCCCChhhHHHHHhhc
Q 000307 1474 INESEPKEGAPISWQLKLLNSYLDR---ARSLPYLKL--LPRQFINNIERPRLQQLIDNLLS--PVSSDFSLVNLVLEVC 1546 (1690)
Q Consensus 1474 le~~dL~KAEqMS~~~KtVsTYLDT---AWILf~~~~--lARiYI~~i~k~rv~~liDqaL~--~~S~dsS~vNkALE~W 1546 (1690)
-+- +-+. -..+|.=. -|++|.... +.++|.+++.|+- +.+.==-+. |-..-++-.+.-|.||
T Consensus 600 ~~~--~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (932)
T PRK13184 600 HES--LYKH--------RREALVFMLLALWIAPEKISSREEEKFLEILYHKQ-QATLFCQLDKTPLQFRSSKMELFLSFW 668 (932)
T ss_pred HHH--HHHH--------HHHHHHHHHHHHHhCcccccchHHHHHHHHHHhhc-cCCceeeccCchhhhhhhhHHHHHHHH
Confidence 321 1111 11333332 599999887 6677776554432 111000111 1123345678889999
Q ss_pred cC-CCCcccccccccchhHHHHHHHhhc-----CcchhhHHHHHHHhhccC
Q 000307 1547 YG-PSLLPRNFSKLKDLVDFVEGIMEIV-----PSNYQLAFSVFKLLNKDH 1591 (1690)
Q Consensus 1547 ~g-~slLpqKI~~kKyI~dfVE~ime~~-----P~Ny~LALav~kll~k~~ 1591 (1690)
.| +..||.-+..--.+.|| +++-+++ =+|.+++-...-.|...+
T Consensus 669 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (932)
T PRK13184 669 SGFTPFLPELFQRAWDLRDY-RALADIFYVACDLGNWEFFSQFSDILAEVS 718 (932)
T ss_pred hcCchhhHHHHHHHhhcccH-HHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence 65 44466655444444455 5554433 244454444444444333
No 309
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=28.43 E-value=2.3e+02 Score=34.70 Aligned_cols=109 Identities=13% Similarity=0.138 Sum_probs=79.1
Q ss_pred ccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccC-CCCcccccHHHHHH
Q 000307 1118 NHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATG-SNDRHSLFLSDILT 1196 (1690)
Q Consensus 1118 ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~-G~sE~~lSLsKi~~ 1196 (1690)
..|+..++++|+-.++.- ++ ..+.+.---+++.|||.++.+++.+.+.++...|+- |.-= ++.+.|+++
T Consensus 92 eeki~Elde~i~~~eedn----gE-----~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~Ki-Dv~l~kiRl 161 (412)
T COG5187 92 EEKIEELDERIREKEEDN----GE-----TEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKI-DVFLCKIRL 161 (412)
T ss_pred HHHHHHHHHHHHHHhhcc----cc-----hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccch-hhHHHHHHH
Confidence 467888888888776553 22 134677788999999999999999999999875443 4554 788889998
Q ss_pred HhccCCccch-----hHHHHH--------HHhhccccHHHHhhccchhhhhcC
Q 000307 1197 CLTISDKLIF-----WVCCVY--------LVIYRKLPDAVLQLLECEKELFAI 1236 (1690)
Q Consensus 1197 YLt~sDkc~A-----wLc~iY--------dl~YrvLPGd~y~qne~~KEAf~I 1236 (1690)
-+-.+|+... .+-.++ --+|.+--|-+.|.-..-|||-.+
T Consensus 162 g~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~L 214 (412)
T COG5187 162 GLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAIL 214 (412)
T ss_pred HHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHH
Confidence 8888998876 222222 456777777777777777777444
No 310
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=27.09 E-value=2.1e+02 Score=37.17 Aligned_cols=53 Identities=15% Similarity=0.085 Sum_probs=42.0
Q ss_pred HhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 000307 1324 LQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRW 1378 (1690)
Q Consensus 1324 L~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~f 1378 (1690)
+.+.+-.++|+..|.+++...|.. .++=++.-||+.+++.+.+.++-.++.+|
T Consensus 269 arklGr~~EAIk~~rdLlke~p~~--~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 269 ARKLGRLREAIKMFRDLLKEFPNL--DNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHhCChHHHHHHHHHHHhhCCcc--chhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 334454569999999999887742 12338899999999999999999999884
No 311
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=27.05 E-value=50 Score=32.78 Aligned_cols=18 Identities=50% Similarity=0.575 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 000307 474 KALKAYRKAQRALIEANA 491 (1690)
Q Consensus 474 ~alkayrkaqraliean~ 491 (1690)
+||.+||||+|-|+|+.+
T Consensus 26 ~Al~~Y~~gi~~l~eg~a 43 (79)
T cd02679 26 QALAHYRKGLRELEEGIA 43 (79)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 599999999999999875
No 312
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=25.96 E-value=92 Score=24.15 Aligned_cols=28 Identities=14% Similarity=0.311 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHhhcc
Q 000307 1151 DLFLQMLQCFCMSGNTEKAIQRISRLLI 1178 (1690)
Q Consensus 1151 DvLL~LvqLY~qSGnydKAI~tL~rLEq 1178 (1690)
..+-.++..+...|+++.|++.++.++.
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3567889999999999999999998884
No 313
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=25.72 E-value=1.5e+02 Score=30.04 Aligned_cols=58 Identities=17% Similarity=0.221 Sum_probs=38.5
Q ss_pred HHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 000307 1035 VEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSV 1097 (1690)
Q Consensus 1035 l~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAV 1097 (1690)
|+--|+++++.. .++|+....++|+.-++.+.-|..++-++-...+--.-.+|+..|+
T Consensus 10 ie~GlkLY~~~~-----~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 10 IEKGLKLYHQNE-----TQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred HHHHHHHhccch-----HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666644 4899999999999999999888776655433333223345555554
No 314
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=25.51 E-value=84 Score=25.13 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=21.9
Q ss_pred HHHHHHHHHhhhcChHHHHHHHHHHHhh
Q 000307 1428 GYLNLSLHRLLQNDWNEARLAIDAALKA 1455 (1690)
Q Consensus 1428 a~LGD~Lyq~Lqg~~~EAf~AYDkALk~ 1455 (1690)
.-||.+|+. .|+++||...|++|+..
T Consensus 6 ~~la~~~~~--~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 6 NNLANAYRA--QGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHH--CT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--hhhcchhhHHHHHHHHH
Confidence 567788988 89999999999999865
No 315
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=25.31 E-value=80 Score=29.11 Aligned_cols=34 Identities=3% Similarity=-0.130 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH
Q 000307 1072 LWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1105 (1690)
Q Consensus 1072 aWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~ 1105 (1690)
-+|.++.-+++.++-+.|..+++.+.++.|+|-.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 4678888888899999999999999999998876
No 316
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=24.61 E-value=1.5e+02 Score=29.50 Aligned_cols=43 Identities=16% Similarity=0.153 Sum_probs=35.4
Q ss_pred chHHHHHHHHHhcCCCCHHHHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCc
Q 000307 1087 VGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDE 1142 (1690)
Q Consensus 1087 ~ea~emfekAVelaP~NY~Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr 1142 (1690)
..|..++.+||+++ ...++.+.+..|.+||++|.+..... ||.
T Consensus 4 ~~A~~~a~~AVe~D------------~~gr~~eAi~~Y~~aIe~L~q~~~~~-pD~ 46 (75)
T cd02682 4 EMARKYAINAVKAE------------KEGNAEDAITNYKKAIEVLSQIVKNY-PDS 46 (75)
T ss_pred HHHHHHHHHHHHHH------------hcCCHHHHHHHHHHHHHHHHHHHHhC-CCh
Confidence 35677888999988 45678888889999999999999988 774
No 317
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=24.21 E-value=3.9e+02 Score=36.74 Aligned_cols=156 Identities=13% Similarity=0.060 Sum_probs=87.5
Q ss_pred hhHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHhCCCCchHHHHHHHHHhc----CCCCHHHHHHHHhcCCCcccc
Q 000307 1050 EGMKKALSLLSRALEADPTS-----EILWITYLLIFYSNTNSVGKDDMFSYSVKH----NEGSYALWLMYINSRTPLNHR 1120 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPtS-----AeaWyeyl~lY~~~~~~~ea~emfekAVel----aP~NY~Lw~mYINsr~s~ddr 1120 (1690)
|+.+.|.++-.++|+--|.+ ..++...+...+=+|.-..+..|...|-+. +..=|.+|..++.++.=+.-=
T Consensus 472 ~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG 551 (894)
T COG2909 472 GDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQG 551 (894)
T ss_pred CCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh
Confidence 56788888888888877764 567788888888888877777666555444 533334777775433100000
Q ss_pred hHHHHHHHHHH----------------------------HHhhhcCC---CCc----chhhhhhHHHH--HHHHHHHhhh
Q 000307 1121 LDAYDAALSVL----------------------------CRCASASD---GDE----MHASACILDLF--LQMLQCFCMS 1163 (1690)
Q Consensus 1121 l~aYdrAI~aL----------------------------e~las~~~---pDr----~~~Sa~ILDvL--L~LvqLY~qS 1163 (1690)
-..|..+..++ .++..... ..- .+.--+++--+ +.|+.++..+
T Consensus 552 q~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~ 631 (894)
T COG2909 552 QVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLR 631 (894)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhc
Confidence 12222222222 11111000 000 00000111112 4799999999
Q ss_pred cCHHHHHHHHHhhcccccCCCCcc-----cccHHHHHHHhccCCccch
Q 000307 1164 GNTEKAIQRISRLLIPATGSNDRH-----SLFLSDILTCLTISDKLIF 1206 (1690)
Q Consensus 1164 GnydKAI~tL~rLEq~Al~G~sE~-----~lSLsKi~~YLt~sDkc~A 1206 (1690)
|++++|..++++++.....|. ++ .+.+.++...+..+|+..+
T Consensus 632 Gdl~~A~~~l~~~~~l~~~~~-~~~~~~a~~~~v~~~lwl~qg~~~~a 678 (894)
T COG2909 632 GDLDKALAQLDELERLLLNGQ-YHVDYLAAAYKVKLILWLAQGDKELA 678 (894)
T ss_pred CCHHHHHHHHHHHHHHhcCCC-CCchHHHHHHHhhHHHhcccCCHHHH
Confidence 999999999999997555554 32 1223344555666666655
No 318
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=24.20 E-value=1.5e+03 Score=28.34 Aligned_cols=129 Identities=17% Similarity=0.193 Sum_probs=78.2
Q ss_pred HHHHHHHhccccCchhhHHHHHHHHHHHHHh----CC----CCHHHHHHHHHHHHhCCCCchHHHHHHHHHh----cCCC
Q 000307 1035 VEMALLILNQDANKLEGMKKALSLLSRALEA----DP----TSEILWITYLLIFYSNTNSVGKDDMFSYSVK----HNEG 1102 (1690)
Q Consensus 1035 l~lAl~~Lnq~~n~~g~yDAALdLLsrALEI----NP----tSAeaWyeyl~lY~~~~~~~ea~emfekAVe----laP~ 1102 (1690)
+++|-...+ +.++.+|..+|.+-|.- +- +-.....++..+|...+....-.+....--+ ....
T Consensus 7 le~a~~~v~-----~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~ 81 (421)
T COG5159 7 LELANNAVK-----SNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKP 81 (421)
T ss_pred HHHHHHhhh-----hhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcch
Confidence 455554443 36688999999998865 11 1345677899999888775433222211111 1110
Q ss_pred CHH-----HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhc
Q 000307 1103 SYA-----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1177 (1690)
Q Consensus 1103 NY~-----Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLE 1177 (1690)
--. |..++-...-+|++.+.++.+-|+.-- |+.+-+-=+++=-.++.+|-++|.|..||+-|+-+.
T Consensus 82 k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~---------rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 82 KITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWAD---------REKRKFLRLELECKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred hHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 111 445555555566666666666555431 122334346777789999999999999999887776
No 319
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=23.69 E-value=1e+03 Score=29.25 Aligned_cols=81 Identities=12% Similarity=0.120 Sum_probs=42.4
Q ss_pred HHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHHHHHHhhhcccccccccchhhhccccchhhHHHHhhhc
Q 000307 1450 DAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDRARSLPYLKLLPRQFINNIERPRLQQLIDNLL 1529 (1690)
Q Consensus 1450 DkALk~np~N~~i~cLNNYAYFLSle~~dL~KAEqMS~~~KtVsTYLDTAWILf~~~~lARiYI~~i~k~rv~~liDqaL 1529 (1690)
-+.+..+|.| +-.||=-.-++-.+. .|.+.-.+.. .+.+.+ --++..-|..-.|| +--+.+++|
T Consensus 211 ~~~I~~vP~N--eSaWnYL~G~l~~d~-gl~s~s~vv~---f~~~l~---~~~~~~sP~lla~l-------~d~~~e~~l 274 (318)
T KOG0530|consen 211 KDKILLVPNN--ESAWNYLKGLLELDS-GLSSDSKVVS---FVENLY---LQLPKRSPFLLAFL-------LDLYAEDAL 274 (318)
T ss_pred HHHHHhCCCC--ccHHHHHHHHHHhcc-CCcCCchHHH---HHHHHh---hccCCCChhHHHHH-------HHHHHHHHh
Confidence 4567899999 999986666665522 2555444333 112221 01122223223333 222227777
Q ss_pred CCCCCChhhHHHHHhhc
Q 000307 1530 SPVSSDFSLVNLVLEVC 1546 (1690)
Q Consensus 1530 ~~~S~dsS~vNkALE~W 1546 (1690)
.+.++..+..++|++.|
T Consensus 275 ~~~~~~~~~a~~a~~ly 291 (318)
T KOG0530|consen 275 AYKSSAEELARKAVKLY 291 (318)
T ss_pred hccccchHHHHHHHHHH
Confidence 77655555566677666
No 320
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=23.51 E-value=9e+02 Score=25.60 Aligned_cols=89 Identities=12% Similarity=0.181 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhC----CCCchHHHHHHHHHhcCCCCHH---------HHHHHHhcCCCcccchHHHHHHHHHHHHhhh
Q 000307 1070 EILWITYLLIFYSN----TNSVGKDDMFSYSVKHNEGSYA---------LWLMYINSRTPLNHRLDAYDAALSVLCRCAS 1136 (1690)
Q Consensus 1070 AeaWyeyl~lY~~~----~~~~ea~emfekAVelaP~NY~---------Lw~mYINsr~s~ddrl~aYdrAI~aLe~las 1136 (1690)
=.+|+.|..-..+. +....-..+++++++.-.++-. +|..|++.- +.+.++|..|.+
T Consensus 22 L~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~----------~~~~~if~~l~~ 91 (126)
T PF08311_consen 22 LDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS----------SDPREIFKFLYS 91 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB----------SHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc----------cCHHHHHHHHHH
Confidence 35566665544332 3445556788888776654321 999999987 288888888888
Q ss_pred cCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHH
Q 000307 1137 ASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRIS 1174 (1690)
Q Consensus 1137 ~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~ 1174 (1690)
.. -.. ..-.....-+.++...|++++|-.++.
T Consensus 92 ~~-IG~-----~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 92 KG-IGT-----KLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HT-TST-----TBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cC-ccH-----HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 65 222 235667788999999999999987553
No 321
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=23.13 E-value=5.5e+02 Score=34.55 Aligned_cols=94 Identities=20% Similarity=0.139 Sum_probs=61.4
Q ss_pred HhCCCcchh-HHHHHHHhhccCCCccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcc
Q 000307 1309 KLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQY 1387 (1690)
Q Consensus 1309 e~~P~d~eL-~L~AayL~~k~m~e~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~ff~gia~~Q~ 1387 (1690)
++.-++.+- .++|+|+.+++-+.-|-..|..+= + --|+++.-++.++|++|-+|.++
T Consensus 741 kld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~g----D--------~ksiVqlHve~~~W~eAFalAe~---------- 798 (1081)
T KOG1538|consen 741 KLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMG----D--------LKSLVQLHVETQRWDEAFALAEK---------- 798 (1081)
T ss_pred hcchhhhhHHHHHHHHHhhccccchHHHHHHHhc----c--------HHHHhhheeecccchHhHhhhhh----------
Confidence 444455554 788899888886666666665541 1 13577777888889888887743
Q ss_pred cccccchhhcccCCCCCCCCCCCCCcccccccccchhhhhHHHHHHHHHhhhcChHHHHHHHHHHHhhcc
Q 000307 1388 SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAA 1457 (1690)
Q Consensus 1388 ~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~Lyq~Lqg~~~EAf~AYDkALk~np 1457 (1690)
-|+++.|+| -.-+.-|.+ ..+.+||+.||-||=+..-
T Consensus 799 --------------------hPe~~~dVy-----------~pyaqwLAE--~DrFeEAqkAfhkAGr~~E 835 (1081)
T KOG1538|consen 799 --------------------HPEFKDDVY-----------MPYAQWLAE--NDRFEEAQKAFHKAGRQRE 835 (1081)
T ss_pred --------------------Ccccccccc-----------chHHHHhhh--hhhHHHHHHHHHHhcchHH
Confidence 345667877 233444455 6678888888888754433
No 322
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=22.73 E-value=3.8e+02 Score=29.43 Aligned_cols=63 Identities=10% Similarity=0.023 Sum_probs=53.8
Q ss_pred ccCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHHHHH
Q 000307 1045 DANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWL 1108 (1690)
Q Consensus 1045 ~~n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~Lw~ 1108 (1690)
...+.+......+...+.++-.| .+.++..|+.++...|+.++|.+...+|-.+-|.+....+
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~~~~~ 182 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPADEFAAA 182 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHHHHHH
Confidence 34567778889999999999999 6788999999999999999999999999999995554333
No 323
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.40 E-value=1.2e+03 Score=33.35 Aligned_cols=59 Identities=17% Similarity=0.091 Sum_probs=40.5
Q ss_pred cchhHHHHH-HHhhccccHHHHhhccchhhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhcCCcchhhhh
Q 000307 1204 LIFWVCCVY-LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKET 1275 (1690)
Q Consensus 1204 c~AwLc~iY-dl~YrvLPGd~y~qne~~KEAf~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~ 1275 (1690)
.+|.=-.+| +++||.+-+-+|-.+++-|.-..+ ..+ | .+..+|+.|-+. .++-+++++.
T Consensus 1493 ~LAq~lEkH~L~efrriaAylyk~n~rW~qSiel---~Kk----d-----~lyKDame~Aa~-S~~~~lae~L 1552 (1666)
T KOG0985|consen 1493 GLAQRLEKHELVEFRRIAAYLYKGNNRWKQSIEL---CKK----D-----KLYKDAMETAAE-SRDTELAEEL 1552 (1666)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhccchHHHHHHH---hhh----h-----hHHHHHHHHHHh-cCChHHHHHH
Confidence 344444667 999999999999999998888777 332 2 355666666654 5555555553
No 324
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.07 E-value=3.4e+02 Score=35.30 Aligned_cols=122 Identities=13% Similarity=0.068 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHHHHHhCCCC-HHHHHHH---HHHHHhCCCCchHHHHHHHHHhcC---CCCHH--------HHHHHHhcC
Q 000307 1050 EGMKKALSLLSRALEADPTS-EILWITY---LLIFYSNTNSVGKDDMFSYSVKHN---EGSYA--------LWLMYINSR 1114 (1690)
Q Consensus 1050 g~yDAALdLLsrALEINPtS-AeaWyey---l~lY~~~~~~~ea~emfekAVela---P~NY~--------Lw~mYINsr 1114 (1690)
.+...++.-|+--+..-|.. .||-+++ ..+|...++.+.|...+|+|.-.. |..|. |+.+|+...
T Consensus 23 PkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~ 102 (629)
T KOG2300|consen 23 PKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLA 102 (629)
T ss_pred hhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhc
Confidence 34455544444444333332 3444443 234555677899999999997654 33334 888888887
Q ss_pred CCcccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhcccccCCCCc
Q 000307 1115 TPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDR 1186 (1690)
Q Consensus 1115 ~s~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE 1186 (1690)
.+|.-.-...-+||+ ++..+ | +|==-+++||+|+....++|..||. ++.....+.++
T Consensus 103 ~s~~~~KalLrkaie----lsq~~-p------~wsckllfQLaql~~idkD~~sA~e----lLavga~sAd~ 159 (629)
T KOG2300|consen 103 QSFPPAKALLRKAIE----LSQSV-P------YWSCKLLFQLAQLHIIDKDFPSALE----LLAVGAESADH 159 (629)
T ss_pred CCCchHHHHHHHHHH----HhcCC-c------hhhHHHHHHHHHHHhhhccchhHHH----HHhccccccch
Confidence 788877777778887 34444 3 3445689999999999999999999 55544444554
No 325
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=22.03 E-value=2e+02 Score=34.89 Aligned_cols=96 Identities=16% Similarity=0.112 Sum_probs=0.0
Q ss_pred CcchhHHHHHHHhhccCCC----ccHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCChhHHHHHHHH---HHHHHhhh
Q 000307 1313 SCLELVLMKARLQKHDFGD----LSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR---WFHSVWKV 1385 (1690)
Q Consensus 1313 ~d~eL~L~AayL~~k~m~e----~Ai~vfe~aL~~~PkNa~g~qcaW~QLiq~Al~~e~~d~ai~L~~~---ff~gia~~ 1385 (1690)
..+++-|--+|...|+|.+ +|+..|+++|+++|....----+--|.|..-...++++++.+--++ |..+.-.-
T Consensus 22 sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTr 101 (440)
T KOG1464|consen 22 SEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTR 101 (440)
T ss_pred CCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc
Q ss_pred cccccccchhhcccCCCCCCCCCCCCCcccccccccchhhh
Q 000307 1386 QYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVM 1426 (1690)
Q Consensus 1386 Q~~~deALD~lr~g~s~i~~es~s~~vSDfy~~~~~Q~d~~ 1426 (1690)
.++....-.+++ |.+.|+|||+.
T Consensus 102 NySEKsIN~IlD------------------yiStS~~m~LL 124 (440)
T KOG1464|consen 102 NYSEKSINSILD------------------YISTSKNMDLL 124 (440)
T ss_pred cccHHHHHHHHH------------------HHhhhhhhHHH
No 326
>smart00356 ZnF_C3H1 zinc finger.
Probab=20.79 E-value=59 Score=24.83 Aligned_cols=22 Identities=36% Similarity=0.803 Sum_probs=17.2
Q ss_pred Ccceeeccccccc-CCCCcchhh
Q 000307 876 WPLCMYELRGKCN-NDECPWQHV 897 (1690)
Q Consensus 876 ~~lC~fel~G~CN-d~~C~wQH~ 897 (1690)
..+|++=.+|.|+ .+.|++-|.
T Consensus 4 ~~~C~~~~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 4 TELCKFFKRGYCPYGDRCKFAHP 26 (27)
T ss_pred CCcCcCccCCCCCCCCCcCCCCc
Confidence 3478866899999 567999885
No 327
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=20.62 E-value=1.1e+02 Score=36.48 Aligned_cols=59 Identities=12% Similarity=0.063 Sum_probs=54.1
Q ss_pred CchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCCHH
Q 000307 1047 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1105 (1690)
Q Consensus 1047 n~~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfekAVelaP~NY~ 1105 (1690)
.++++.++|..++.+||+.-|.-+.-|+-++.+--+.+.-..+-..+++-.+++|+.-.
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 45678899999999999999999999999999988888888899999999999998877
No 328
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=20.62 E-value=5.8e+02 Score=28.38 Aligned_cols=94 Identities=12% Similarity=0.014 Sum_probs=71.4
Q ss_pred HHHHHHHHHHhccccCchhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCC-CHH--
Q 000307 1032 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS---EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG-SYA-- 1105 (1690)
Q Consensus 1032 qlWl~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtS---AeaWyeyl~lY~~~~~~~ea~emfekAVelaP~-NY~-- 1105 (1690)
..|.++|-.++. .|+++.|+..|.++++-..+. -.++.....+....++-..+..+..+|-.+-.. -.|
T Consensus 37 ~~~~~l~~~~~~-----~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~ 111 (177)
T PF10602_consen 37 MALEDLADHYCK-----IGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWER 111 (177)
T ss_pred HHHHHHHHHHHH-----hhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHH
Confidence 677777776665 499999999999999854332 356777888888888988888888888776644 123
Q ss_pred -------HHHHHHhcCCCcccchHHHHHHHHHHHHhhhcC
Q 000307 1106 -------LWLMYINSRTPLNHRLDAYDAALSVLCRCASAS 1138 (1690)
Q Consensus 1106 -------Lw~mYINsr~s~ddrl~aYdrAI~aLe~las~~ 1138 (1690)
-+..++..| .|.+|.+.|-+....+
T Consensus 112 ~nrlk~~~gL~~l~~r--------~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 112 RNRLKVYEGLANLAQR--------DFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHHhc--------hHHHHHHHHHccCcCC
Confidence 677888889 9999999995555444
No 329
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=20.07 E-value=8.8e+02 Score=31.96 Aligned_cols=125 Identities=14% Similarity=0.062 Sum_probs=70.7
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHH-----HHHhcCCCCHH-------HHHHHHhcCCC
Q 000307 1049 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFS-----YSVKHNEGSYA-------LWLMYINSRTP 1116 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEINPtSAeaWyeyl~lY~~~~~~~ea~emfe-----kAVelaP~NY~-------Lw~mYINsr~s 1116 (1690)
.+.||+.+.+|+--=.+|-.+--+.+.++-.+|...+...-...+. +|-.+.|+.-- ---||-|+. -
T Consensus 30 ~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~a-V 108 (696)
T KOG2471|consen 30 NSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFA-V 108 (696)
T ss_pred CcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhh-e
Confidence 4678888888876667777777777888877666655333222222 22222222111 112333433 1
Q ss_pred cccchHHHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHhhhcCHHHHHHHHHhhc
Q 000307 1117 LNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1177 (1690)
Q Consensus 1117 ~ddrl~aYdrAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLE 1177 (1690)
.=+-...|..|++..+.+++.. ...+..+|+ .+. +..++||.-+-..++|++-++=|+
T Consensus 109 i~yh~~~~g~a~~~~~~lv~r~-e~le~~~aa-~v~-~l~~~l~~~t~q~e~al~~l~vL~ 166 (696)
T KOG2471|consen 109 IFYHHEENGSAMQLSSNLVSRT-ESLESSSAA-SVT-LLSDLLAAETSQCEEALDYLNVLA 166 (696)
T ss_pred eeeeHhhcchHHHhhhhHHHHH-HHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223348999999999998876 333333333 222 234567777777777766554443
Done!