Query 000307
Match_columns 1690
No_of_seqs 102 out of 104
Neff 3.6
Searched_HMMs 29240
Date Tue Mar 26 17:51:48 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000307.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_84-88//hhsearch_pdb/000307hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 171.4 27.1 353 1049-1473 12-384 (388)
2 2xpi_A Anaphase-promoting comp 1.0 1 1 164.7 21.8 380 1029-1484 82-496 (597)
3 3fp2_A TPR repeat-containing p 1.0 1 1 159.5 23.7 356 1029-1484 23-399 (537)
4 2xpi_A Anaphase-promoting comp 1.0 1 1 157.6 28.0 268 1068-1377 82-364 (597)
5 2y4t_A DNAJ homolog subfamily 1.0 1 1 154.5 30.5 328 1022-1469 17-370 (450)
6 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 152.9 24.6 315 1028-1377 30-364 (388)
7 2gw1_A Mitochondrial precursor 1.0 1 1 151.1 30.7 374 1029-1476 4-386 (514)
8 3fp2_A TPR repeat-containing p 1.0 1 1 148.3 24.7 304 1024-1377 52-403 (537)
9 3ieg_A DNAJ homolog subfamily 1.0 1 1 145.6 28.6 313 1030-1469 2-347 (359)
10 2y4t_A DNAJ homolog subfamily 1.0 1 1 139.1 22.6 324 1053-1484 9-350 (450)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=171.35 Aligned_cols=353 Identities=12% Similarity=0.034 Sum_probs=193.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHH----HHHHHHHCCCCCCCCHHHH
Q ss_conf 565999999999999829998799999999887288982188899999841999999----9999985279865216889
Q 000307 1049 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAY 1124 (1690)
Q Consensus 1049 ~g~yDAALdLLsrALEINPtSaelWyeyl~lY~~~~~~~ea~emlekAVelaP~NY~----Lw~mYINsr~s~ddrl~aY 1124 (1690)
.|+++.|+..+..+++.+|+++.+|+.++.+|...+...++...+++|++.+|.+.. ++..|...+ .|
T Consensus 12 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g--------~~ 83 (388)
T 1w3b_A 12 AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG--------QL 83 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--------CH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC--------CH
T ss_conf 7999999999999998497889999999999998689999999999997619786699999999998779--------99
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 99999999853038999400112137999999999966058999999999630533699995314099999975217832
Q 000307 1125 DAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKL 1204 (1690)
Q Consensus 1125 dkAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc 1204 (1690)
++|+..|.+..... |+. .+.+..+..+|...|++++|+..+.+... ....+. ......-..|...++-.
T Consensus 84 ~~A~~~~~~al~~~-p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~-~~~~~l~~~~~~~g~~~ 152 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDF-------IDGYINLAAALVAAGDMEGAVQAYVSALQ--YNPDLY-CVRSDLGNLLKALGRLE 152 (388)
T ss_dssp HHHHHHHHHHHHHC-TTC-------HHHHHHHHHHHHHHSCSSHHHHHHHHHHH--HCTTCT-HHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHCC-CCH-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCH-HHHHHHHHHHHHCCCHH
T ss_conf 99999999998749-653-------99999999999985899999999999997--598968-99999999999846899
Q ss_pred CHHHHHH-----H--HHHHCCCCHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH--
Q ss_conf 0557878-----8--876303508898411430232217799865530326669999999999987312895113331--
Q 000307 1205 IFWVCCV-----Y--LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKET-- 1275 (1690)
Q Consensus 1205 ~AwLa~i-----Y--li~YrvLPGdiy~qne~~KEAl~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~-- 1275 (1690)
.|.-++. . .......+|.+|...+...+|... +.++++.+|+++-+++.++ ..+.. .++-..+...
T Consensus 153 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~---~~~al~~~p~~~~~~~~lg-~~~~~-~~~~~~A~~~~~ 227 (388)
T 1w3b_A 153 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHH---FEKAVTLDPNFLDAYINLG-NVLKE-ARIFDRAVAAYL 227 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHH---HHHHHHHCTTCHHHHHHHH-HHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHH---HHHHHHCCCCCHHHHHHHH-HHHHH-CCCHHHHHHHHH
T ss_conf 999999999872989789999999999985999999999---9999855988679999999-99998-578999999999
Q ss_pred -----CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHH--HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf -----015325777899999997116699999999999949984116--9889998302479750999999998299998
Q 000307 1276 -----NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGV 1348 (1690)
Q Consensus 1276 -----s~k~d~~tKLNlIRq~I~lEdse~ai~LfdklLe~~P~d~eL--~L~AaYL~~K~m~e~Ai~vfe~aLsi~PkNa 1348 (1690)
++.. ...-.++...+....+.+.++..|++.++..|.+.+. .|...|....+ .++++..|+.++...|++.
T Consensus 228 ~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~ 305 (388)
T 1w3b_A 228 RALSLSPNH-AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS-VAEAEDCYNTALRLCPTHA 305 (388)
T ss_dssp HHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCCCH
T ss_conf 998529687-89999999999986889999999999986499988999999999998699-7999999999986494449
Q ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 52679999999999965993589999999999884522552222010003678899999999975333353221225667
Q 000307 1349 PGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFG 1428 (1690)
Q Consensus 1349 ~giqcaWnQLiq~Al~~e~~D~vi~L~~~ff~sia~~Q~~~~eALD~lr~g~s~i~~es~s~~vSDFy~~~~~Q~d~~fa 1428 (1690)
. +|+.++......+++++++..+++ ..... + . ..+.+ .
T Consensus 306 ~----~~~~l~~~~~~~g~~~~A~~~~~~---------------------al~~~-p----~-~~~~~-----------~ 343 (388)
T 1w3b_A 306 D----SLNNLANIKREQGNIEEAVRLYRK---------------------ALEVF-P----E-FAAAH-----------S 343 (388)
T ss_dssp H----HHHHHHHHHHTTTCHHHHHHHHHH---------------------HTTSC-T----T-CHHHH-----------H
T ss_pred H----HHHHHHHHHHHCCCHHHHHHHHHH---------------------HHHCC-C----C-CHHHH-----------H
T ss_conf 9----999999999984899999999999---------------------98609-8----7-39999-----------7
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 989999884202969999999999711027708999999898881
Q 000307 1429 YLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLL 1473 (1690)
Q Consensus 1429 iLGD~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLS 1473 (1690)
.++.+|++ .|+.+||...|+++++..|.+ ...+.+.+..+.
T Consensus 344 ~l~~~~~~--~g~~~~A~~~~~~a~~~~p~~--~~a~~~lg~~~~ 384 (388)
T 1w3b_A 344 NLASVLQQ--QGKLQEALMHYKEAIRISPTF--ADAYSNMGNTLK 384 (388)
T ss_dssp HHHHHHHT--TTCCHHHHHHHHHHHTTCTTC--HHHHHHHHHHHH
T ss_pred HHHHHHHH--CCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHH
T ss_conf 79999998--688899999999998619997--899985999998
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=164.66 Aligned_cols=380 Identities=10% Similarity=-0.044 Sum_probs=257.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHH---
Q ss_conf 12689999999872102476565999999999999829998799999999887288982188899999841999999---
Q 000307 1029 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--- 1105 (1690)
Q Consensus 1029 ~d~elWi~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSaelWyeyl~lY~~~~~~~ea~emlekAVelaP~NY~--- 1105 (1690)
.+.+.|..++-.++.. |+++.|+.+|.++++.+|+. ..|+.++..|...+...++...|++++... .+..
T Consensus 82 ~~~~~~~~~~~~~~~~-----g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 154 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQ-----QQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLYN-RSSACRY 154 (597)
T ss_dssp CHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGGG-TCHHHHH
T ss_pred HHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHCCCHHHHHHHHHHHHCCC-CCHHHHH
T ss_conf 8999999999999874-----58347999999999608993-579999999997476999999999873354-5650899
Q ss_pred -HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHH------------HHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf -99999852798652168899999999985303899940011------------21379999999999660589999999
Q 000307 1106 -LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHAS------------ACILDLFLQMLQCFCMSGNTEKAIQR 1172 (1690)
Q Consensus 1106 -Lw~mYINsr~s~ddrl~aYdkAI~aLe~las~~~pDr~~~S------------a~ILDvLL~LvqLY~qSGnydKAI~t 1172 (1690)
++.+|...+ .+++|+..|.++. ++..... ..-.+++..+..+|...|++++|+..
T Consensus 155 ~l~~~~~~~g--------~~~~A~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 222 (597)
T 2xpi_A 155 LAAFCLVKLY--------DWQGALNLLGETN----PFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKEC 222 (597)
T ss_dssp HHHHHHHHTT--------CHHHHHHHHCSSC----TTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHH--------HHHHHHHHHHCCC----CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 9999999886--------6999999984248----863223234334321123512589999988999983998999999
Q ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHH-----------HHHHHCCCCHHHHHHCCCHHHHHCCCCCCC
Q ss_conf 996305336999953140999999752178320557878-----------887630350889841143023221779986
Q 000307 1173 ISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCV-----------YLVIYRKLPDAVLQLLECEKELFAIDWPPV 1241 (1690)
Q Consensus 1173 L~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLa~i-----------Yli~YrvLPGdiy~qne~~KEAl~I~W~yv 1241 (1690)
+.++.. ....+. .....-...++..++...+.+... .....-...+..|...+..++|..+ +.
T Consensus 223 ~~~~~~--~~p~~~-~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~---~~ 296 (597)
T 2xpi_A 223 YKEALM--VDAKCY-EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY---LS 296 (597)
T ss_dssp HHHHHH--HCTTCH-HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH---HH
T ss_pred HHHHHH--HCCHHH-HHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH---HH
T ss_conf 999997--293256-999999985034615678999865774234430889999999999998073139999999---98
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCC------HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 55303266699999999999873128951133310153------257778999999971166999999999999499841
Q 000307 1242 QLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRS------AHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCL 1315 (1690)
Q Consensus 1242 qvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~s~k~------d~~tKLNlIRq~I~lEdse~ai~LfdklLe~~P~d~ 1315 (1690)
+.++. |.++.....++ ..|.. .|+-+.+.....++ ...+-..++.++....+.+.+..+|+++++..|.++
T Consensus 297 ~~~~~-~~~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 373 (597)
T 2xpi_A 297 SINGL-EKSSDLLLCKA-DTLFV-RSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKA 373 (597)
T ss_dssp TSTTG-GGCHHHHHHHH-HHHHH-TTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSH
T ss_pred HHHCC-CCHHHHHHHHH-HHHHH-HCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCH
T ss_conf 76438-83099999999-99998-46899999999999972955379999999999982777799999999985183547
Q ss_pred HH--HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 16--9889998302479750999999998299998526799999999999659935899999999998845225522220
Q 000307 1316 EL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEIS 1393 (1690)
Q Consensus 1316 eL--~L~AaYL~~K~m~e~Ai~vfe~aLsi~PkNa~giqcaWnQLiq~Al~~e~~D~vi~L~~~ff~sia~~Q~~~~eAL 1393 (1690)
.. .|...|...++ .++++..|++++.+.|++.. +|+.++......++++++++++++...
T Consensus 374 ~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~------------- 435 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNK-ISEARRYFSKSSTMDPQFGP----AWIGFAHSFAIEGEHDQAISAYTTAAR------------- 435 (597)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHTCHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHCC-HHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHH-------------
T ss_conf 999999999998356-99999999999872977789----999999999975777999999999998-------------
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 10003678899999999975333353221225667989999884202969999999999711027708999999898881
Q 000307 1394 DPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLL 1473 (1690)
Q Consensus 1394 D~lr~g~s~i~~es~s~~vSDFy~~~~~Q~d~~faiLGD~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLS 1473 (1690)
..++ ..+.+ ..++.+|.+ .|+.++|...|++++...|.+ ..+|++.+..+.
T Consensus 436 ---------~~~~-----~~~~~-----------~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~ 486 (597)
T 2xpi_A 436 ---------LFQG-----THLPY-----------LFLGMQHMQ--LGNILLANEYLQSSYALFQYD--PLLLNELGVVAF 486 (597)
T ss_dssp ---------TTTT-----CSHHH-----------HHHHHHHHH--HTCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHH
T ss_pred ---------HCCC-----CHHHH-----------HHHHHHHHH--CCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHH
T ss_conf ---------6813-----43899-----------999999998--579999999999999848887--679999999999
Q ss_pred CCCCCCCCCCC
Q ss_conf 17889885666
Q 000307 1474 INESEPKEGAP 1484 (1690)
Q Consensus 1474 le~~dL~KAEq 1484 (1690)
..| +.++|..
T Consensus 487 ~~g-~~~~A~~ 496 (597)
T 2xpi_A 487 NKS-DMQTAIN 496 (597)
T ss_dssp HTT-CHHHHHH
T ss_pred HHC-CHHHHHH
T ss_conf 818-9999999
No 3
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=159.49 Aligned_cols=356 Identities=13% Similarity=0.028 Sum_probs=230.1
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHH---
Q ss_conf 12689999999872102476565999999999999829998799999999887288982188899999841999999---
Q 000307 1029 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--- 1105 (1690)
Q Consensus 1029 ~d~elWi~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSaelWyeyl~lY~~~~~~~ea~emlekAVelaP~NY~--- 1105 (1690)
...+.|..+|..++.+ |+++.|+..|.++++++|+++.+|+.++.+|..++...++...|++|++.+|++..
T Consensus 23 ~~a~~~~~~g~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 97 (537)
T 3fp2_A 23 AYAVQLKNRGNHFFTA-----KNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALL 97 (537)
T ss_dssp HHHHHHHHHHHHHHHT-----TCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHH-----CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 8899999999999986-----42999999999998638998489999999999868999999999999860986289999
Q ss_pred -HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCC
Q ss_conf -9999985279865216889999999998530389994001121379999999999660589999999996305336999
Q 000307 1106 -LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSN 1184 (1690)
Q Consensus 1106 -Lw~mYINsr~s~ddrl~aYdkAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~ 1184 (1690)
++..|...+ .|++|+..|. ..... |+. ..+. +..+...+...+|+..+..+........
T Consensus 98 ~la~~~~~~g--------~~~~A~~~~~-~~~~~-~~~--~~~~--------~~~~~~~~~~~~a~~~~~~~l~~~~~~~ 157 (537)
T 3fp2_A 98 RRASANESLG--------NFTDAMFDLS-VLSLN-GDF--DGAS--------IEPMLERNLNKQAMKVLNENLSKDEGRG 157 (537)
T ss_dssp HHHHHHHHHT--------CHHHHHHHHH-HHC----------------------CHHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHCC--------CHHHHHHHHH-HHHCC-CCC--CHHH--------HHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999838--------9999999999-98648-787--8588--------9999987789889999999997474545
Q ss_pred CCCCCCHHHHHHHHCCCCCCCH---------------HHHHHHHHHHCCCCHHHHHHCCCHHHHHCCCCCCCCCCHHHHH
Q ss_conf 9531409999997521783205---------------5787888763035088984114302322177998655303266
Q 000307 1185 DRHSLFLSDILTCLTISDKLIF---------------WVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQ 1249 (1690)
Q Consensus 1185 sE~~lSLsKi~~YLt~sDkc~A---------------wLa~iYli~YrvLPGdiy~qne~~KEAl~I~W~yvqvlkdEPd 1249 (1690)
.....+...+..|+...+...+ ++.......|....+++....+.-.+|..+ +.++++.+|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~---~~~~l~~~p~ 234 (537)
T 3fp2_A 158 SQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDM---YHSLLSANTV 234 (537)
T ss_dssp -CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHH---HHHHHC--CC
T ss_pred CCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHCCC
T ss_conf 4345067579999974474999998763256461789999999878876402068888799999999---9999987877
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHH--HHHHHHHHHC
Q ss_conf 69999999999987312895113331015325777899999997116699999999999949984116--9889998302
Q 000307 1250 RAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKH 1327 (1690)
Q Consensus 1250 nalAL~smA~dYY~~~~ndEsla~~~s~k~d~~tKLNlIRq~I~lEdse~ai~LfdklLe~~P~d~eL--~L~AaYL~~K 1327 (1690)
+.-....++.-++.. -..+....+.+.++.+|.+.++..|. ... .+...|+..+
T Consensus 235 ~~~~~~~~~~~~~~~-----------------------g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 290 (537)
T 3fp2_A 235 DDPLRENAALALCYT-----------------------GIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKE 290 (537)
T ss_dssp CHHHHHHHHHHHHHH-----------------------HHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSS
T ss_pred CCHHHHHHHHHHHHH-----------------------HHHHHHCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHC
T ss_conf 404459999999999-----------------------99987545578999999999866987-469999999999803
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCC
Q ss_conf 47975099999999829999852679999999999965993589999999999884522552222010003678899999
Q 000307 1328 DFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPES 1407 (1690)
Q Consensus 1328 ~m~e~Ai~vfe~aLsi~PkNa~giqcaWnQLiq~Al~~e~~D~vi~L~~~ff~sia~~Q~~~~eALD~lr~g~s~i~~es 1407 (1690)
+ .+.++..|+.++...|++.. +|..++......++++.++..+++... ..++
T Consensus 291 ~-~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~a~~----------------------~~~~- 342 (537)
T 3fp2_A 291 N-SQEFFKFFQKAVDLNPEYPP----TYYHRGQMYFILQDYKNAKEDFQKAQS----------------------LNPE- 342 (537)
T ss_dssp C-CHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------HCTT-
T ss_pred C-HHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHH----------------------HCCC-
T ss_conf 7-99999999997545999879----999999999866899999999999998----------------------5999-
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99997533335322122566798999988420296999999999971102770899999989888117889885666
Q 000307 1408 TSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAP 1484 (1690)
Q Consensus 1408 ~s~~vSDFy~~~~~Q~d~~faiLGD~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLSle~~dL~KAEq 1484 (1690)
..+.+ ..++.+|++ .|+.++|...|++++...|.+ ..++.+++..+...+ +.++|..
T Consensus 343 ----~~~~~-----------~~la~~~~~--~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g-~~~~A~~ 399 (537)
T 3fp2_A 343 ----NVYPY-----------IQLACLLYK--QGKFTESEAFFNETKLKFPTL--PEVPTFFAEILTDRG-DFDTAIK 399 (537)
T ss_dssp ----CSHHH-----------HHHHHHHHH--TTCHHHHHHHHHHHHHHCTTC--THHHHHHHHHHHHTT-CHHHHHH
T ss_pred ----CHHHH-----------HHHHHHHHH--CCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHC-CHHHHHH
T ss_conf ----77999-----------999999998--477999999999998739998--599999999998837-8899999
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=157.56 Aligned_cols=268 Identities=9% Similarity=-0.093 Sum_probs=138.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHH---HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 98799999999887288982188899999841999999---999998527986521688999999999853038999400
Q 000307 1068 TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMH 1144 (1690)
Q Consensus 1068 tSaelWyeyl~lY~~~~~~~ea~emlekAVelaP~NY~---Lw~mYINsr~s~ddrl~aYdkAI~aLe~las~~~pDr~~ 1144 (1690)
..+..|..++..|...+...++...|+++++..|++.. ++..|...+ .+++|+..|..+... +..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~--~~~-- 149 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTG--------DYARAKCLLTKEDLY--NRS-- 149 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHTCGG--GTC--
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC--------CHHHHHHHHHHHHCC--CCC--
T ss_conf 89999999999998745834799999999960899357999999999747--------699999999987335--456--
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHH
Q ss_conf 11213799999999996605899999999963053369999531409999997521783205578788876303508898
Q 000307 1145 ASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVL 1224 (1690)
Q Consensus 1145 ~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLa~iYli~YrvLPGdiy 1224 (1690)
.+++..++.+|...|++++|+..+.++.+ ... ....+....+-... ...........|..|
T Consensus 150 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~------~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~ 210 (597)
T 2xpi_A 150 -----SACRYLAAFCLVKLYDWQGALNLLGETNP-----FRK------DEKNANKLLMQDGG---IKLEASMCYLRGQVY 210 (597)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHHHHHHCSSCT-----TC----------------CCCSS---CCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----CCC------CCCCCCCCCCCCCC---CCHHHHHHHHHHHHH
T ss_conf -----50899999999988669999999842488-----632------23234334321123---512589999988999
Q ss_pred HHCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCC----CCHHHHHH------HHHHHHHHH
Q ss_conf 41143023221779986553032666999999999998731289511333101----53257778------999999971
Q 000307 1225 QLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNL----RSAHCFAV------NHIWCMAVL 1294 (1690)
Q Consensus 1225 ~qne~~KEAl~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~s~----k~d~~tKL------NlIRq~I~l 1294 (1690)
...+...+|..+ |.+.++.+|++..+...++ ..+.. .++......... ........ .++..+...
T Consensus 211 ~~~g~~~~A~~~---~~~~~~~~p~~~~~~~~l~-~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (597)
T 2xpi_A 211 TNLSNFDRAKEC---YKEALMVDAKCYEAFDQLV-SNHLL-TADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHE 285 (597)
T ss_dssp HHTTCHHHHHHH---HHHHHHHCTTCHHHHHHHH-HTTCS-CHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTH
T ss_pred HHCCCHHHHHHH---HHHHHHHCCHHHHHHHHHH-HHHCC-CCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 983998999999---9999972932569999999-85034-615678999865774234430889999999999998073
Q ss_pred CCHHHHHHHHHHHHHHCCCCCHH--HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 16699999999999949984116--9889998302479750999999998299998526799999999999659935899
Q 000307 1295 NGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAA 1372 (1690)
Q Consensus 1295 Edse~ai~LfdklLe~~P~d~eL--~L~AaYL~~K~m~e~Ai~vfe~aLsi~PkNa~giqcaWnQLiq~Al~~e~~D~vi 1372 (1690)
.+.+.++.+|+++++. |.++.. .+...|....+ .++++..|++++...|++.. +|..++......+++++++
T Consensus 286 g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~ 359 (597)
T 2xpi_A 286 DELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSR-FIDVLAITTKILEIDPYNLD----VYPLHLASLHESGEKNKLY 359 (597)
T ss_dssp HHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCCT----THHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHCCCCCHH----HHHHHHHHHHHHCCHHHHH
T ss_conf 1399999999876438-8309999999999998468-99999999999972955379----9999999999827777999
Q ss_pred HHHHH
Q ss_conf 99999
Q 000307 1373 ELMDR 1377 (1690)
Q Consensus 1373 ~L~~~ 1377 (1690)
.+..+
T Consensus 360 ~~~~~ 364 (597)
T 2xpi_A 360 LISND 364 (597)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
No 5
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=154.49 Aligned_cols=328 Identities=11% Similarity=0.033 Sum_probs=247.5
Q ss_pred HHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf 22211001268999999987210247656599999999999982999879999999988728898218889999984199
Q 000307 1022 NKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNE 1101 (1690)
Q Consensus 1022 n~Le~~~~d~elWi~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSaelWyeyl~lY~~~~~~~ea~emlekAVelaP 1101 (1690)
+-+...|.+.+.|+.+|..++.. |+++.|+.+|.++++.+|..+.+|+.++..|...+...++...|++|++.+|
T Consensus 17 ~~~~~~p~~~~~~~~~~~~~~~~-----g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 91 (450)
T 2y4t_A 17 NLYFQSMADVEKHLELGKKLLAA-----GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM 91 (450)
T ss_dssp ------CHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 35665378999999999999987-----9999999999999984971689999999999987997999999999984498
Q ss_pred CCHH----HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC---HHHHHHH-----HHHHHHHHHHHHHCCHHHH
Q ss_conf 9999----99999852798652168899999999985303899940---0112137-----9999999999660589999
Q 000307 1102 GSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEM---HASACIL-----DLFLQMLQCFCMSGNTEKA 1169 (1690)
Q Consensus 1102 ~NY~----Lw~mYINsr~s~ddrl~aYdkAI~aLe~las~~~pDr~---~~Sa~IL-----DvLL~LvqLY~qSGnydKA 1169 (1690)
.+.. ++..|...+ .+++|+..|.++.... |+.. ..-..+. ..++.+..+|...|++++|
T Consensus 92 ~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 92 DFTAARLQRGHLLLKQG--------KLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA 162 (450)
T ss_dssp TCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 74899999999999869--------9999999999997249-99701688999999999999999999999986899999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHCCCHHHHHCCCCCCCCCCHHHHH
Q ss_conf 99999630533699995314099999975217832055787888763035088984114302322177998655303266
Q 000307 1170 IQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQ 1249 (1690)
Q Consensus 1170 I~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLa~iYli~YrvLPGdiy~qne~~KEAl~I~W~yvqvlkdEPd 1249 (1690)
+..+.++.. . .+ . .......+|.+|...+..++|..+ +.++++.+|+
T Consensus 163 ~~~~~~~~~--~---~~-~------------------------~~~~~~~l~~~~~~~g~~~~A~~~---~~~~~~~~~~ 209 (450)
T 2y4t_A 163 IAFLDKILE--V---CV-W------------------------DAELRELRAECFIKEGEPRKAISD---LKAASKLKND 209 (450)
T ss_dssp HHHHHHHHH--H---CT-T------------------------CHHHHHHHHHHHHHTTCGGGGHHH---HHHHHHHHCS
T ss_pred HHHHHHHHH--H---CC-C------------------------CHHHHHHHHHHHHHCCCHHHHHHH---HHHHHHHCCC
T ss_conf 999999998--6---88-9------------------------769999999999877999999999---9999986889
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHH-HH---------
Q ss_conf 69999999999987312895113331015325777899999997116699999999999949984116-98---------
Q 000307 1250 RAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VL--------- 1319 (1690)
Q Consensus 1250 nalAL~smA~dYY~~~~ndEsla~~~s~k~d~~tKLNlIRq~I~lEdse~ai~LfdklLe~~P~d~eL-~L--------- 1319 (1690)
++.++..+| ..|.. .| +.+.++.+|+++++..|..... ..
T Consensus 210 ~~~~~~~l~-~~~~~-~g----------------------------~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 210 NTEAFYKIS-TLYYQ-LG----------------------------DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp CHHHHHHHH-HHHHH-TT----------------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHH-HHHHH-CC----------------------------CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 879999999-99997-59----------------------------9999999999998759980899999999999999
Q ss_pred ----HHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf ----8999830247975099999999829999852679999999999965993589999999999884522552222010
Q 000307 1320 ----MKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDP 1395 (1690)
Q Consensus 1320 ----~AaYL~~K~m~e~Ai~vfe~aLsi~PkNa~giqcaWnQLiq~Al~~e~~D~vi~L~~~ff~sia~~Q~~~~eALD~ 1395 (1690)
...++..++ .++++..|+.++.+.|++.....-+|..++......++++.++..+++... .
T Consensus 260 ~~~~~~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--------------~ 324 (450)
T 2y4t_A 260 LIESAEELIRDGR-YTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ--------------M 324 (450)
T ss_dssp HHHHHHHHHHHTC-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--------------H
T ss_pred HHHHHHHHHHCCC-HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------------H
T ss_conf 9999999987179-999999999998508733689999999999999987889999999999988--------------4
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 00367889999999997533335322122566798999988420296999999999971102770899999989
Q 000307 1396 LVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHA 1469 (1690)
Q Consensus 1396 lr~g~s~i~~es~s~~vSDFy~~~~~Q~d~~faiLGD~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYA 1469 (1690)
.+ ...+.+ ..+|.++.. +|+.++|...|+++++..|.+ ..++...+
T Consensus 325 --------~p-----~~~~~~-----------~~l~~~~~~--~~~~~~A~~~~~~al~~~p~~--~~~~~~l~ 370 (450)
T 2y4t_A 325 --------EP-----DNVNAL-----------KDRAEAYLI--EEMYDEAIQDYETAQEHNEND--QQIREGLE 370 (450)
T ss_dssp --------CT-----TCHHHH-----------HHHHHHHHH--TTCHHHHHHHHHHHHTTSSSC--HHHHHHHH
T ss_pred --------CC-----CCHHHH-----------HHHHHHHHH--HCCHHHHHHHHHHHHHHCCCH--HHHHHHHH
T ss_conf --------84-----548999-----------999999987--037999999999998859352--99999999
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=152.90 Aligned_cols=315 Identities=9% Similarity=-0.013 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHH--
Q ss_conf 012689999999872102476565999999999999829998799999999887288982188899999841999999--
Q 000307 1028 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-- 1105 (1690)
Q Consensus 1028 ~~d~elWi~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSaelWyeyl~lY~~~~~~~ea~emlekAVelaP~NY~-- 1105 (1690)
|.+...|+.++..++.. ++++.|...+..+++.+|..+.+|+.++..|...+...++.+.|++|++.+|++..
T Consensus 30 p~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 104 (388)
T 1w3b_A 30 PDNTGVLLLLSSIHFQC-----RRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGY 104 (388)
T ss_dssp TTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 78899999999999986-----8999999999999761978669999999999877999999999999987496539999
Q ss_pred --HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCC
Q ss_conf --999998527986521688999999999853038999400112137999999999966058999999999630533699
Q 000307 1106 --LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGS 1183 (1690)
Q Consensus 1106 --Lw~mYINsr~s~ddrl~aYdkAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G 1183 (1690)
++..|...+ .+++|+..|.+..+.. |+. ..+...+..+|...|++++|+..+.+... ...
T Consensus 105 ~~l~~~~~~~g--------~~~~A~~~~~~al~~~-p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p 166 (388)
T 1w3b_A 105 INLAAALVAAG--------DMEGAVQAYVSALQYN-PDL-------YCVRSDLGNLLKALGRLEEAKACYLKAIE--TQP 166 (388)
T ss_dssp HHHHHHHHHHS--------CSSHHHHHHHHHHHHC-TTC-------THHHHHHHHHHHTTSCHHHHHHHHHHHHH--HCT
T ss_pred HHHHHHHHHCC--------CHHHHHHHHHHHHHHC-CCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCC
T ss_conf 99999999858--------9999999999999759-896-------89999999999984689999999999987--298
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCHHHH-----HHH--HHHHCCCCHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99531409999997521783205578-----788--87630350889841143023221779986553032666999999
Q 000307 1184 NDRHSLFLSDILTCLTISDKLIFWVC-----CVY--LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIE 1256 (1690)
Q Consensus 1184 ~sE~~lSLsKi~~YLt~sDkc~AwLa-----~iY--li~YrvLPGdiy~qne~~KEAl~I~W~yvqvlkdEPdnalAL~s 1256 (1690)
.+. .........|...++-..|--. ... .......+|.++...+...+|... +.+.++.+|+++.++..
T Consensus 167 ~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~---~~~al~~~p~~~~~~~~ 242 (388)
T 1w3b_A 167 NFA-VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA---YLRALSLSPNHAVVHGN 242 (388)
T ss_dssp TCH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHH---HHHHHHHCTTCHHHHHH
T ss_pred CCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHH---HHHHHHHCCCCHHHHHH
T ss_conf 978-99999999999859999999999999855988679999999999985789999999---99998529687899999
Q ss_pred HHHHHHHHHCCCCCHHHHH-------CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHH--HHHHHHHHHC
Q ss_conf 9999987312895113331-------015325777899999997116699999999999949984116--9889998302
Q 000307 1257 MAVNSVELYSNGESLEKET-------NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKH 1327 (1690)
Q Consensus 1257 mA~dYY~~~~ndEsla~~~-------s~k~d~~tKLNlIRq~I~lEdse~ai~LfdklLe~~P~d~eL--~L~AaYL~~K 1327 (1690)
+|.-|+. .|+-..+... ++.. ...-.++...+....+.+.++.+|++.++..|.+.+. .|...|....
T Consensus 243 l~~~~~~--~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 319 (388)
T 1w3b_A 243 LACVYYE--QGLIDLAIDTYRRAIELQPHF-PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHH--TTCHHHHHHHHHHHHHTCSSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHH--CCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 9999998--688999999999998649998-8999999999998699799999999998649444999999999999848
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 47975099999999829999852679999999999965993589999999
Q 000307 1328 DFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1377 (1690)
Q Consensus 1328 ~m~e~Ai~vfe~aLsi~PkNa~giqcaWnQLiq~Al~~e~~D~vi~L~~~ 1377 (1690)
+ .++++..|+.++...|++.. +|+.++......+++++++...++
T Consensus 320 ~-~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~ 364 (388)
T 1w3b_A 320 N-IEEAVRLYRKALEVFPEFAA----AHSNLASVLQQQGKLQEALMHYKE 364 (388)
T ss_dssp C-HHHHHHHHHHHTTSCTTCHH----HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHCCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9-99999999999860987399----997799999986888999999999
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=151.06 Aligned_cols=374 Identities=10% Similarity=-0.032 Sum_probs=207.9
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHH---
Q ss_conf 12689999999872102476565999999999999829998799999999887288982188899999841999999---
Q 000307 1029 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--- 1105 (1690)
Q Consensus 1029 ~d~elWi~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSaelWyeyl~lY~~~~~~~ea~emlekAVelaP~NY~--- 1105 (1690)
...+.|+..|..++.. |+|+.|+..|.++++.+| ++.+|+.++..|...+...++...|++|++.+|.+..
T Consensus 4 ~~a~~~~~~g~~~~~~-----g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 77 (514)
T 2gw1_A 4 KYALALKDKGNQFFRN-----KKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLL 77 (514)
T ss_dssp HHHHHHHHHHHHHHHT-----SCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHH-----CCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 4579999987899986-----027899999999985592-2789986889999885499999999877606937899999
Q ss_pred -HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCC
Q ss_conf -9999985279865216889999999998530389994001121379999999999660589999999996305336999
Q 000307 1106 -LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSN 1184 (1690)
Q Consensus 1106 -Lw~mYINsr~s~ddrl~aYdkAI~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~ 1184 (1690)
++..|...+ .|++|+..|..+.... |.. ...+..++..+.......++...+..+.. . +.
T Consensus 78 ~l~~~~~~~g--------~~~~A~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~-~~ 138 (514)
T 2gw1_A 78 RRASANEGLG--------KFADAMFDLSVLSLNG-DFN-------DASIEPMLERNLNKQAMSKLKEKFGDIDT--A-TA 138 (514)
T ss_dssp HHHHHHHHTT--------CHHHHHHHHHHHHHSS-SCC-------GGGTHHHHHHHHHHHHHHHHTTC------------
T ss_pred HHHHHHHHHH--------HHHHHHHHHHHHHHCC-CCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HH
T ss_conf 8889999876--------6888999999999559-875-------11378999999999999999999998999--9-87
Q ss_pred CCCCCCHH-HHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHCCCHHHHH-CCCCC-CCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 95314099-999975217832055787888763035088984114302322-17799-8655303266699999999999
Q 000307 1185 DRHSLFLS-DILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELF-AIDWP-PVQLEDDEKQRAIKLIEMAVNS 1261 (1690)
Q Consensus 1185 sE~~lSLs-Ki~~YLt~sDkc~AwLa~iYli~YrvLPGdiy~qne~~KEAl-~I~W~-yvqvlkdEPdnalAL~smA~dY 1261 (1690)
.+..+... ..........-........+...|..-+.--.+......+++ ....- +......+.+.+...+..+...
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 218 (514)
T 2gw1_A 139 TPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARL 218 (514)
T ss_dssp ------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 66512677246788634478615899999862587888887259958889999899998762332299999999999988
Q ss_pred HHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHH--HHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 87312895113331015325777899999997116699999999999949984116--9889998302479750999999
Q 000307 1262 VELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEE 1339 (1690)
Q Consensus 1262 Y~~~~ndEsla~~~s~k~d~~tKLNlIRq~I~lEdse~ai~LfdklLe~~P~d~eL--~L~AaYL~~K~m~e~Ai~vfe~ 1339 (1690)
+.....+..-... ........-..+...+....+.+.++.+|.++++..|. ... .+...|+...+ .+.++..|+.
T Consensus 219 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~-~~~A~~~~~~ 295 (514)
T 2gw1_A 219 FEEQLDKNNEDEK-LKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRND-STEYYNYFDK 295 (514)
T ss_dssp HHHHTTTSTTCHH-HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSC-CTTGGGHHHH
T ss_pred HHHHHCCCCCCCC-CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCC-HHHHHHHHHH
T ss_conf 6654223810011-48278999999999999878999999999999863864-8999999999998888-9999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99829999852679999999999965993589999999999884522552222010003678899999999975333353
Q 000307 1340 ALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSN 1419 (1690)
Q Consensus 1340 aLsi~PkNa~giqcaWnQLiq~Al~~e~~D~vi~L~~~ff~sia~~Q~~~~eALD~lr~g~s~i~~es~s~~vSDFy~~~ 1419 (1690)
++...|++.. +|..++......++++.++..+++... ..++ ..+.+
T Consensus 296 ~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~----------------------~~~~-----~~~~~--- 341 (514)
T 2gw1_A 296 ALKLDSNNSS----VYYHRGQMNFILQNYDQAGKDFDKAKE----------------------LDPE-----NIFPY--- 341 (514)
T ss_dssp HHTTCTTCTH----HHHHHHHHHHHTTCTTHHHHHHHHHHH----------------------TCSS-----CSHHH---
T ss_pred HHHCCCCCHH----HHHHHHHHHHHHCCHHHHHHHHHHHHH----------------------HCHH-----HHHHH---
T ss_conf 8613867789----999999999980779999999999987----------------------3850-----28999---
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 221225667989999884202969999999999711027708999999898881178
Q 000307 1420 RNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINE 1476 (1690)
Q Consensus 1420 ~~Q~d~~faiLGD~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLSle~ 1476 (1690)
..++.++++ .|+.++|...|+++++..|.+ ..++.+.+..+...+
T Consensus 342 --------~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~ 386 (514)
T 2gw1_A 342 --------IQLACLAYR--ENKFDDCETLFSEAKRKFPEA--PEVPNFFAEILTDKN 386 (514)
T ss_dssp --------HHHHHHTTT--TTCHHHHHHHHHHHHHHSTTC--SHHHHHHHHHHHHTT
T ss_pred --------HHHHHHHHH--CCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCC
T ss_conf --------999999998--689999999999999875467--789999999998788
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=148.25 Aligned_cols=304 Identities=13% Similarity=-0.008 Sum_probs=149.2
Q ss_pred HHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 21100126899999998721024765659999999999998299987999999998872889821888999998419999
Q 000307 1024 LKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1103 (1690)
Q Consensus 1024 Le~~~~d~elWi~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSaelWyeyl~lY~~~~~~~ea~emlekAVelaP~N 1103 (1690)
++..|.+...|..+|..++.. |+++.|+..+.++++++|+.+.+|+.++.+|...+...++...|+ ++..+|+.
T Consensus 52 l~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~ 125 (537)
T 3fp2_A 52 IELDPNEPVFYSNISACYIST-----GDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDF 125 (537)
T ss_dssp HHHCTTCHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----
T ss_pred HHHCCCCCHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH-HHHCCCCC
T ss_conf 863899848999999999986-----899999999999986098628999999999998389999999999-98648787
Q ss_pred HHH-HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHH---HH---------------------------HHHHH
Q ss_conf 999-999985279865216889999999998530389994001---12---------------------------13799
Q 000307 1104 YAL-WLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHA---SA---------------------------CILDL 1152 (1690)
Q Consensus 1104 Y~L-w~mYINsr~s~ddrl~aYdkAI~aLe~las~~~pDr~~~---Sa---------------------------~ILDv 1152 (1690)
... ...++... ....|+..|..+.... |+.... +. ....+
T Consensus 126 ~~~~~~~~~~~~--------~~~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (537)
T 3fp2_A 126 DGASIEPMLERN--------LNKQAMKVLNENLSKD-EGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALL 196 (537)
T ss_dssp ------CHHHHH--------HHHHHHHHHHHHCC--------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHH
T ss_pred CHHHHHHHHHHH--------HHHHHHHHHHHHHHHC-CCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHH
T ss_conf 858899999877--------8988999999999747-4545434506757999997447499999876325646178999
Q ss_pred HHHHHHHHHHH--------CCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHH
Q ss_conf 99999999660--------5899999999963053369999531409999997521783205578788876303508898
Q 000307 1153 FLQMLQCFCMS--------GNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVL 1224 (1690)
Q Consensus 1153 LL~LvqLY~qS--------GnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLa~iYli~YrvLPGdiy 1224 (1690)
...+..+|..+ |++++|+..+.++.. ....++ .... . ........|.++
T Consensus 197 ~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~--~~p~~~-~~~~---------------~-----~~~~~~~~g~~~ 253 (537)
T 3fp2_A 197 SDALQRLYSATDEGYLVANDLLTKSTDMYHSLLS--ANTVDD-PLRE---------------N-----AALALCYTGIFH 253 (537)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCH-HHHH---------------H-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCC-HHHH---------------H-----HHHHHHHHHHHH
T ss_conf 9999878876402068888799999999999998--787740-4459---------------9-----999999999998
Q ss_pred HHCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH-------CCCCHHHHHHHHHHHHHHHCCH
Q ss_conf 411430232217799865530326669999999999987312895113331-------0153257778999999971166
Q 000307 1225 QLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKET-------NLRSAHCFAVNHIWCMAVLNGL 1297 (1690)
Q Consensus 1225 ~qne~~KEAl~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~-------s~k~d~~tKLNlIRq~I~lEds 1297 (1690)
...+..++|... +.++++.+|+ ..+++.+| ..|.. .++-..+... ++.. ...-.++...+....+.
T Consensus 254 ~~~~~~~~A~~~---~~~~~~~~~~-~~~~~~l~-~~~~~-~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 254 FLKNNLLDAQVL---LQESINLHPT-PNSYIFLA-LTLAD-KENSQEFFKFFQKAVDLNPEY-PPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHTTCHHHHHHH---HHHHHHHCCC-HHHHHHHH-HHTCC-SSCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCH
T ss_pred HHCCCHHHHHHH---HHHHHHCCCC-CHHHHHHH-HHHHH-HCCHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCH
T ss_conf 754557899999---9999866987-46999999-99998-037999999999975459998-79999999999866899
Q ss_pred HHHHHHHHHHHHHCCCCCHH--HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 99999999999949984116--9889998302479750999999998299998526799999999999659935899999
Q 000307 1298 ECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELM 1375 (1690)
Q Consensus 1298 e~ai~LfdklLe~~P~d~eL--~L~AaYL~~K~m~e~Ai~vfe~aLsi~PkNa~giqcaWnQLiq~Al~~e~~D~vi~L~ 1375 (1690)
+.++..|++.++..|.+... .+...|....+ .+.++..|+.++...|++.. +|..+.......++++.++..+
T Consensus 327 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~ 401 (537)
T 3fp2_A 327 KNAKEDFQKAQSLNPENVYPYIQLACLLYKQGK-FTESEAFFNETKLKFPTLPE----VPTFFAEILTDRGDFDTAIKQY 401 (537)
T ss_dssp HHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCTH----HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHHCCHHHHHHHH
T ss_conf 999999999998599977999999999998477-99999999999873999859----9999999998837889999999
Q ss_pred HH
Q ss_conf 99
Q 000307 1376 DR 1377 (1690)
Q Consensus 1376 ~~ 1377 (1690)
++
T Consensus 402 ~~ 403 (537)
T 3fp2_A 402 DI 403 (537)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 9
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=1.00 E-value=1 Score=145.59 Aligned_cols=313 Identities=11% Similarity=0.033 Sum_probs=243.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHH----
Q ss_conf 2689999999872102476565999999999999829998799999999887288982188899999841999999----
Q 000307 1030 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---- 1105 (1690)
Q Consensus 1030 d~elWi~lAl~~Lnq~~n~~g~yDAALdLLsrALEINPtSaelWyeyl~lY~~~~~~~ea~emlekAVelaP~NY~---- 1105 (1690)
|.+.|+.+|..++.. |+++.|+..|.++++.+|..+.+|+.++.+|...+...++...|++|++..|.+..
T Consensus 2 ~~~~~~~~~~~~~~~-----g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 76 (359)
T 3ieg_A 2 DVEKHLELGKKLLAA-----GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQ 76 (359)
T ss_dssp HHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 578899879999875-----899999999999986196569999999999997347799999999999868996469999
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCC---CCCHHHHHHHHHHH------------HHHHHHHHHCCHHHHH
Q ss_conf 99999852798652168899999999985303899---94001121379999------------9999996605899999
Q 000307 1106 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDG---DEMHASACILDLFL------------QMLQCFCMSGNTEKAI 1170 (1690)
Q Consensus 1106 Lw~mYINsr~s~ddrl~aYdkAI~aLe~las~~~p---Dr~~~Sa~ILDvLL------------~LvqLY~qSGnydKAI 1170 (1690)
++.+|...+ .|++|+..|....... | +. .+++. .+..+|...|++++|+
T Consensus 77 l~~~~~~~~--------~~~~A~~~~~~~~~~~-~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 140 (359)
T 3ieg_A 77 RGHLLLKQG--------KLDEAEDDFKKVLKSN-PSEQEE-------KEAESQLVKADEMQRLRSQALDAFDGADYTAAI 140 (359)
T ss_dssp HHHHHHHHT--------CHHHHHHHHHHHHTSC-CCHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHCC--------CHHHHHHHHHHHHHCC-CCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 999999837--------8599999999998639-766671-------889999999999999999999998724779999
Q ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHCCCHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 99996305336999953140999999752178320557878887630350889841143023221779986553032666
Q 000307 1171 QRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQR 1250 (1690)
Q Consensus 1171 ~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwLa~iYli~YrvLPGdiy~qne~~KEAl~I~W~yvqvlkdEPdn 1250 (1690)
..+.++.. ....+. ......|.++...+..++|... +.++++.+|++
T Consensus 141 ~~~~~~~~--~~~~~~----------------------------~~~~~~~~~~~~~~~~~~A~~~---~~~~~~~~~~~ 187 (359)
T 3ieg_A 141 TFLDKILE--VCVWDA----------------------------ELRELRAECFIKEGEPRKAISD---LKAASKLKSDN 187 (359)
T ss_dssp HHHHHHHH--HCTTCH----------------------------HHHHHHHHHHHHTTCHHHHHHH---HHHHHTTCSCC
T ss_pred HHHHHHHH--HCCCCH----------------------------HHHHHHHHHHHHCCCHHHHHHH---HHHHHHHCCCC
T ss_conf 99999997--689966----------------------------8999999999877899999999---99998739777
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHH-HH----------
Q ss_conf 9999999999987312895113331015325777899999997116699999999999949984116-98----------
Q 000307 1251 AIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VL---------- 1319 (1690)
Q Consensus 1251 alAL~smA~dYY~~~~ndEsla~~~s~k~d~~tKLNlIRq~I~lEdse~ai~LfdklLe~~P~d~eL-~L---------- 1319 (1690)
+.+++.+| ..|.. .+ +.+.++..|.+.++..|.+... .+
T Consensus 188 ~~~~~~la-~~~~~-~~----------------------------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 188 TEAFYKIS-TLYYQ-LG----------------------------DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHHH-HHHHH-HT----------------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHH-CC----------------------------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 79999999-99998-49----------------------------89999999999985185645899999999999999
Q ss_pred ---HHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf ---89998302479750999999998299998526799999999999659935899999999998845225522220100
Q 000307 1320 ---MKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPL 1396 (1690)
Q Consensus 1320 ---~AaYL~~K~m~e~Ai~vfe~aLsi~PkNa~giqcaWnQLiq~Al~~e~~D~vi~L~~~ff~sia~~Q~~~~eALD~l 1396 (1690)
...++..++ .+.++..|+.++...|++.....-+|..+.......++++.++..+++...-
T Consensus 238 ~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------------- 301 (359)
T 3ieg_A 238 IESAEELIRDGR-YTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--------------- 301 (359)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHCCC-HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------
T ss_conf 999999998689-9999999999985398862799999999999998836889999999999985---------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 0367889999999997533335322122566798999988420296999999999971102770899999989
Q 000307 1397 VADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHA 1469 (1690)
Q Consensus 1397 r~g~s~i~~es~s~~vSDFy~~~~~Q~d~~faiLGD~Lyq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYA 1469 (1690)
.+ ...+++ -.+|.+|+. .|+.++|...|++|++..|++ ...+...+
T Consensus 302 -------~~-----~~~~~~-----------~~~~~~~~~--~g~~~~A~~~~~~a~~~~p~~--~~~~~~l~ 347 (359)
T 3ieg_A 302 -------EP-----DNVNAL-----------KDRAEAYLI--EEMYDEAIQDYEAAQEHNEND--QQIREGLE 347 (359)
T ss_dssp -------CT-----TCHHHH-----------HHHHHHHHH--TTCHHHHHHHHHHHHTTCTTC--HHHHHHHH
T ss_pred -------CC-----CCHHHH-----------HHHHHHHHH--CCCHHHHHHHHHHHHHCCCCC--HHHHHHHH
T ss_conf -------92-----237999-----------999999988--078999999999998609998--67999999
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=139.11 Aligned_cols=324 Identities=13% Similarity=-0.016 Sum_probs=204.1
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHH----HHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 99999999999829998799999999887288982188899999841999999----99999852798652168899999
Q 000307 1053 KKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAAL 1128 (1690)
Q Consensus 1053 DAALdLLsrALEINPtSaelWyeyl~lY~~~~~~~ea~emlekAVelaP~NY~----Lw~mYINsr~s~ddrl~aYdkAI 1128 (1690)
..+...+...+..+|.++++|+.++..|+..+...++...|++|++.+|.+.. ++..|...+ .|++|+
T Consensus 9 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g--------~~~~A~ 80 (450)
T 2y4t_A 9 SGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMG--------KSKAAL 80 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--------CHHHHH
T ss_conf 444656423566537899999999999998799999999999999849716899999999999879--------979999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHH
Q ss_conf 99998530389994001121379999999999660589999999996305336999953140999999752178320557
Q 000307 1129 SVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWV 1208 (1690)
Q Consensus 1129 ~aLe~las~~~pDr~~~Sa~ILDvLL~LvqLY~qSGnydKAI~tL~rLEq~Al~G~sE~~lSLsKi~~YLt~sDkc~AwL 1208 (1690)
..|.++.... |+. .+++..+..+|...|++++|+..+.+... ..+. .. .....+ ..|
T Consensus 81 ~~~~~al~~~-p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-~~-~~~~~~--------~~l 137 (450)
T 2y4t_A 81 PDLTKVIQLK-MDF-------TAARLQRGHLLLKQGKLDEAEDDFKKVLK-----SNPS-EN-EEKEAQ--------SQL 137 (450)
T ss_dssp HHHHHHHHHC-TTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----SCCC-HH-HHHHHH--------HHH
T ss_pred HHHHHHHHCC-CCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----CCCC-CH-HHHHHH--------HHH
T ss_conf 9999998449-874-------89999999999986999999999999972-----4999-70-168899--------999
Q ss_pred HHHHHHHHCCCCHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHH
Q ss_conf 87888763035088984114302322177998655303266699999999999873128951133310153257778999
Q 000307 1209 CCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHI 1288 (1690)
Q Consensus 1209 a~iYli~YrvLPGdiy~qne~~KEAl~I~W~yvqvlkdEPdnalAL~smA~dYY~~~~ndEsla~~~s~k~d~~tKLNlI 1288 (1690)
...+...-....|..+...+...+|..+ +.++++..|+++.+++.+| ..|.. .|
T Consensus 138 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~---~~~~~~~~~~~~~~~~~l~-~~~~~-~g--------------------- 191 (450)
T 2y4t_A 138 IKSDEMQRLRSQALNAFGSGDYTAAIAF---LDKILEVCVWDAELRELRA-ECFIK-EG--------------------- 191 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHH---HHHHHHHCTTCHHHHHHHH-HHHHH-TT---------------------
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHH---HHHHHHHCCCCHHHHHHHH-HHHHH-CC---------------------
T ss_conf 9999999999999999986899999999---9999986889769999999-99987-79---------------------
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHCCCCCHH--HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHH--------
Q ss_conf 99997116699999999999949984116--98899983024797509999999982999985267999999--------
Q 000307 1289 WCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQY-------- 1358 (1690)
Q Consensus 1289 Rq~I~lEdse~ai~LfdklLe~~P~d~eL--~L~AaYL~~K~m~e~Ai~vfe~aLsi~PkNa~giqcaWnQL-------- 1358 (1690)
+.+.++.+|.++++..|.++.. .+...|....+ .+.++..|+.++...|++.. .|..+
T Consensus 192 -------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~p~~~~----~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 192 -------EPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGD-HELSLSEVRECLKLDQDHKR----CFAHYKQVKKLNK 259 (450)
T ss_dssp -------CGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHHHH
T ss_conf -------99999999999998688987999999999997599-99999999999875998089----9999999999999
Q ss_pred ----HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf ----9999965993589999999999884522552222010003678899999999975333353221225667989999
Q 000307 1359 ----VEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSL 1434 (1690)
Q Consensus 1359 ----iq~Al~~e~~D~vi~L~~~ff~sia~~Q~~~~eALD~lr~g~s~i~~es~s~~vSDFy~~~~~Q~d~~faiLGD~L 1434 (1690)
+......++++.++.++++ ..... ++ ++....+.+ ..++.++
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~---------------------~l~~~-p~-~~~~~~~~~-----------~~l~~~~ 305 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYES---------------------VMKTE-PS-IAEYTVRSK-----------ERICHCF 305 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHH---------------------HHHHC-CS-SHHHHHHHH-----------HHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH---------------------HHHCC-CC-CHHHHHHHH-----------HHHHHHH
T ss_conf 99999999871799999999999---------------------98508-73-368999999-----------9999999
Q ss_pred HHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 88420296999999999971102770899999989888117889885666
Q 000307 1435 HRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAP 1484 (1690)
Q Consensus 1435 yq~Lqg~~~EAf~AYDkALk~np~N~~i~cLNNYAYFLSle~~dL~KAEq 1484 (1690)
.+ .|+.++|...|++++...|.+ ..+|.+.+..+...+ +.++|..
T Consensus 306 ~~--~g~~~~A~~~~~~a~~~~p~~--~~~~~~l~~~~~~~~-~~~~A~~ 350 (450)
T 2y4t_A 306 SK--DEKPVEAIRVCSEVLQMEPDN--VNALKDRAEAYLIEE-MYDEAIQ 350 (450)
T ss_dssp HT--TTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTT-CHHHHHH
T ss_pred HH--CCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHC-CHHHHHH
T ss_conf 98--788999999999998848454--899999999998703-7999999
Done!