Query 000310
Match_columns 1680
No_of_seqs 273 out of 463
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 03:49:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000310.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000310hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1525 Sister chromatid cohes 100.0 6E-136 1E-140 1322.0 81.8 1067 10-1104 6-1119(1266)
2 KOG1525 Sister chromatid cohes 99.7 5.7E-14 1.2E-18 186.2 51.3 490 640-1252 583-1087(1266)
3 PF09465 LBR_tudor: Lamin-B re 99.0 9.9E-10 2.1E-14 96.1 6.5 45 1378-1422 6-50 (55)
4 PTZ00429 beta-adaptin; Provisi 98.6 0.00013 2.7E-09 96.0 38.7 392 269-755 39-437 (746)
5 KOG2171 Karyopherin (importin) 98.6 0.00058 1.2E-08 90.3 42.4 532 244-855 23-595 (1075)
6 KOG1020 Sister chromatid cohes 98.3 0.061 1.3E-06 73.3 56.5 136 296-443 809-945 (1692)
7 PTZ00429 beta-adaptin; Provisi 98.2 0.0053 1.1E-07 81.2 37.4 122 246-373 89-210 (746)
8 KOG1824 TATA-binding protein-i 98.1 0.092 2E-06 68.7 47.6 382 21-434 24-484 (1233)
9 PF01602 Adaptin_N: Adaptin N 98.0 0.0021 4.5E-08 81.7 28.4 117 245-369 62-179 (526)
10 KOG1020 Sister chromatid cohes 97.8 0.031 6.8E-07 75.9 34.3 164 246-413 797-964 (1692)
11 PRK09687 putative lyase; Provi 97.5 0.00056 1.2E-08 80.9 12.2 145 246-407 41-186 (280)
12 PF01602 Adaptin_N: Adaptin N 97.5 0.11 2.4E-06 66.2 33.3 240 244-534 133-375 (526)
13 PRK09687 putative lyase; Provi 97.4 0.0014 3.1E-08 77.5 12.8 129 262-407 90-219 (280)
14 KOG1060 Vesicle coat complex A 97.3 0.12 2.7E-06 66.6 29.3 131 270-410 43-173 (968)
15 KOG1062 Vesicle coat complex A 97.3 0.2 4.3E-06 65.1 31.2 353 260-714 105-469 (866)
16 KOG0414 Chromosome condensatio 97.2 1.8 4E-05 58.7 57.1 437 245-732 295-797 (1251)
17 PRK13800 putative oxidoreducta 97.1 0.048 1E-06 74.5 24.6 262 63-405 628-895 (897)
18 smart00333 TUDOR Tudor domain. 97.0 0.0012 2.7E-08 59.0 5.9 44 1379-1424 4-48 (57)
19 KOG0212 Uncharacterized conser 97.0 2 4.3E-05 54.5 34.2 430 207-671 26-509 (675)
20 PF12717 Cnd1: non-SMC mitotic 96.9 0.034 7.4E-07 61.5 16.7 94 316-411 1-94 (178)
21 cd04508 TUDOR Tudor domains ar 96.8 0.0027 5.8E-08 54.8 5.7 43 1381-1424 1-44 (48)
22 KOG2025 Chromosome condensatio 96.8 3.3 7.2E-05 53.7 35.3 161 216-406 58-219 (892)
23 smart00743 Agenet Tudor-like d 96.7 0.0026 5.6E-08 58.0 5.5 36 1379-1415 4-39 (61)
24 KOG1824 TATA-binding protein-i 96.7 1.9 4E-05 57.4 31.7 543 204-769 454-1054(1233)
25 KOG1949 Uncharacterized conser 96.7 0.27 5.8E-06 62.9 23.7 100 266-369 224-329 (1005)
26 KOG1060 Vesicle coat complex A 96.6 3.3 7.2E-05 54.3 32.8 160 245-413 91-250 (968)
27 PF13646 HEAT_2: HEAT repeats; 96.6 0.013 2.9E-07 56.2 9.5 83 308-405 4-88 (88)
28 PRK13800 putative oxidoreducta 96.5 0.015 3.2E-07 79.4 12.4 120 263-407 622-741 (897)
29 KOG2023 Nuclear transport rece 96.3 0.48 1E-05 60.5 22.3 368 245-651 378-789 (885)
30 PF10508 Proteasom_PSMB: Prote 96.2 0.46 9.9E-06 61.1 23.3 241 165-410 91-367 (503)
31 PF10508 Proteasom_PSMB: Prote 96.2 2.5 5.5E-05 54.4 29.6 142 263-405 120-268 (503)
32 PLN03200 cellulose synthase-in 96.2 4.4 9.6E-05 59.2 33.7 371 315-752 416-812 (2102)
33 KOG2171 Karyopherin (importin) 96.0 11 0.00024 51.6 69.9 312 62-411 86-420 (1075)
34 PF12348 CLASP_N: CLASP N term 95.9 0.078 1.7E-06 60.4 12.8 146 264-412 55-209 (228)
35 KOG1242 Protein containing ada 95.8 1.9 4.1E-05 55.3 25.2 231 302-582 215-449 (569)
36 KOG4675 Uncharacterized conser 95.8 0.0083 1.8E-07 69.2 4.3 66 1371-1436 152-225 (273)
37 PF14500 MMS19_N: Dos2-interac 95.8 0.8 1.7E-05 54.1 20.5 231 63-308 6-255 (262)
38 KOG1949 Uncharacterized conser 95.7 2.2 4.8E-05 55.1 24.4 188 265-462 177-377 (1005)
39 COG5218 YCG1 Chromosome conden 95.5 10 0.00022 48.6 28.8 255 270-557 99-370 (885)
40 PF13646 HEAT_2: HEAT repeats; 95.3 0.057 1.2E-06 51.8 7.6 86 264-367 1-88 (88)
41 KOG1248 Uncharacterized conser 95.3 20 0.00043 49.5 51.8 167 121-291 282-456 (1176)
42 KOG2011 Sister chromatid cohes 94.8 0.41 8.9E-06 64.7 15.5 125 307-442 291-421 (1048)
43 KOG1061 Vesicle coat complex A 94.7 5.8 0.00013 52.3 24.7 372 262-675 13-416 (734)
44 KOG2023 Nuclear transport rece 94.6 0.46 9.9E-06 60.7 14.3 182 167-382 105-293 (885)
45 PF12460 MMS19_C: RNAPII trans 94.6 9.8 0.00021 47.9 26.4 299 69-379 56-402 (415)
46 PF09038 53-BP1_Tudor: Tumour 94.4 0.068 1.5E-06 55.1 5.6 46 1376-1422 1-46 (122)
47 KOG0213 Splicing factor 3b, su 94.4 7.1 0.00015 51.0 23.8 219 63-330 560-826 (1172)
48 PF12719 Cnd3: Nuclear condens 94.3 0.46 1E-05 56.9 13.3 97 271-371 36-143 (298)
49 COG5096 Vesicle coat complex, 94.1 7.5 0.00016 51.9 24.4 129 271-410 28-157 (757)
50 cd00020 ARM Armadillo/beta-cat 93.9 0.083 1.8E-06 52.8 5.2 106 263-368 8-117 (120)
51 KOG0414 Chromosome condensatio 93.6 1.3 2.7E-05 60.2 16.1 152 244-401 896-1056(1251)
52 PF12717 Cnd1: non-SMC mitotic 93.5 0.68 1.5E-05 51.4 11.8 86 247-335 10-96 (178)
53 PF12755 Vac14_Fab1_bd: Vacuol 93.2 0.22 4.9E-06 50.1 6.8 66 341-407 26-94 (97)
54 PF12348 CLASP_N: CLASP N term 93.2 0.73 1.6E-05 52.5 11.8 102 265-371 97-206 (228)
55 COG5240 SEC21 Vesicle coat com 92.9 8.7 0.00019 48.9 20.6 304 79-406 44-366 (898)
56 COG5096 Vesicle coat complex, 92.5 14 0.00031 49.4 23.2 103 304-410 93-196 (757)
57 COG5098 Chromosome condensatio 92.3 2.7 5.9E-05 54.1 15.6 110 251-361 335-464 (1128)
58 PF12719 Cnd3: Nuclear condens 91.5 9.3 0.0002 45.9 18.7 106 303-410 26-144 (298)
59 PF02985 HEAT: HEAT repeat; I 91.4 0.27 5.9E-06 38.9 3.9 29 343-371 1-29 (31)
60 KOG0413 Uncharacterized conser 91.4 71 0.0015 43.6 32.9 143 265-410 437-646 (1529)
61 KOG1062 Vesicle coat complex A 91.3 8.3 0.00018 51.0 18.6 165 167-371 220-414 (866)
62 PF01347 Vitellogenin_N: Lipop 90.9 3 6.6E-05 54.8 15.1 128 256-404 480-617 (618)
63 PF13513 HEAT_EZ: HEAT-like re 90.7 0.16 3.5E-06 45.0 2.2 52 317-368 1-54 (55)
64 PLN03200 cellulose synthase-in 90.6 1.3E+02 0.0028 45.2 34.8 141 265-409 407-559 (2102)
65 COG5098 Chromosome condensatio 90.5 1.8 4E-05 55.6 11.6 134 245-411 282-417 (1128)
66 cd00020 ARM Armadillo/beta-cat 89.9 0.54 1.2E-05 47.0 5.4 100 308-407 12-118 (120)
67 PF06003 SMN: Survival motor n 89.8 0.58 1.3E-05 55.3 6.3 50 1376-1425 67-117 (264)
68 KOG1078 Vesicle coat complex C 89.7 12 0.00025 49.6 17.9 259 62-365 251-526 (865)
69 PF10363 DUF2435: Protein of u 89.5 2.5 5.5E-05 42.3 9.7 87 302-392 2-89 (92)
70 KOG2259 Uncharacterized conser 89.4 0.54 1.2E-05 60.1 6.0 97 306-406 376-472 (823)
71 KOG2956 CLIP-associating prote 89.1 3.5 7.6E-05 51.5 12.3 173 251-435 321-498 (516)
72 PF13001 Ecm29: Proteasome sta 88.8 16 0.00035 47.2 18.9 129 253-384 361-499 (501)
73 PF05804 KAP: Kinesin-associat 88.6 17 0.00037 48.8 19.0 177 644-831 289-478 (708)
74 PF12755 Vac14_Fab1_bd: Vacuol 88.5 1.1 2.3E-05 45.3 6.3 84 279-362 3-88 (97)
75 PF13513 HEAT_EZ: HEAT-like re 87.9 0.46 1E-05 42.1 3.0 52 356-407 1-55 (55)
76 KOG2259 Uncharacterized conser 87.3 3.5 7.6E-05 53.2 11.0 111 297-410 192-311 (823)
77 TIGR02270 conserved hypothetic 87.0 4.1 8.9E-05 51.2 11.5 54 346-406 151-204 (410)
78 PF12765 Cohesin_HEAT: HEAT re 86.9 0.8 1.7E-05 39.2 3.7 39 327-365 3-41 (42)
79 KOG1820 Microtubule-associated 86.8 7.5 0.00016 52.6 14.3 150 258-411 249-445 (815)
80 COG5240 SEC21 Vesicle coat com 86.0 1.2E+02 0.0026 39.4 30.3 51 624-674 319-369 (898)
81 smart00638 LPD_N Lipoprotein N 85.1 1.1E+02 0.0024 40.2 23.8 143 204-363 420-570 (574)
82 TIGR02270 conserved hypothetic 84.3 11 0.00023 47.6 13.4 135 244-409 42-176 (410)
83 smart00638 LPD_N Lipoprotein N 83.8 34 0.00073 44.9 18.2 144 254-407 389-543 (574)
84 KOG1058 Vesicle coat complex C 83.8 60 0.0013 43.2 19.4 103 257-368 316-422 (948)
85 KOG2011 Sister chromatid cohes 83.5 16 0.00034 50.3 14.9 164 204-412 264-439 (1048)
86 KOG1059 Vesicle coat complex A 82.2 1.9E+02 0.0042 38.7 35.1 112 256-375 103-214 (877)
87 COG1413 FOG: HEAT repeat [Ener 82.1 9.6 0.00021 46.1 11.5 135 249-409 95-242 (335)
88 COG5181 HSH155 U2 snRNP splice 81.9 90 0.0019 40.8 19.4 302 53-366 599-942 (975)
89 PF12231 Rif1_N: Rap1-interact 81.3 1.5E+02 0.0033 36.9 27.2 320 66-411 3-354 (372)
90 KOG1967 DNA repair/transcripti 79.8 8.5 0.00018 51.6 10.3 149 261-409 866-1024(1030)
91 PF12074 DUF3554: Domain of un 78.0 1.2E+02 0.0025 37.2 19.1 203 147-354 19-256 (339)
92 KOG0413 Uncharacterized conser 77.7 31 0.00066 46.7 14.1 132 274-410 943-1074(1529)
93 KOG0392 SNF2 family DNA-depend 77.1 12 0.00026 51.7 10.6 137 241-382 792-944 (1549)
94 KOG1992 Nuclear export recepto 76.2 70 0.0015 43.1 16.7 116 113-233 603-733 (960)
95 PF14676 FANCI_S2: FANCI solen 76.1 3.5 7.6E-05 45.3 4.7 120 246-368 39-158 (158)
96 KOG1943 Beta-tubulin folding c 76.1 3.4E+02 0.0075 38.0 31.9 225 159-413 456-709 (1133)
97 COG1413 FOG: HEAT repeat [Ener 76.0 18 0.00039 43.8 11.3 30 381-410 181-210 (335)
98 PF11864 DUF3384: Domain of un 74.8 2.6E+02 0.0057 36.0 22.0 166 116-291 147-330 (464)
99 KOG0368 Acetyl-CoA carboxylase 74.6 1.4E+02 0.0031 42.7 19.3 220 107-344 768-1022(2196)
100 KOG1243 Protein kinase [Genera 74.1 11 0.00023 49.6 8.8 108 301-408 327-436 (690)
101 KOG1967 DNA repair/transcripti 73.7 24 0.00051 47.7 11.8 125 241-366 883-1019(1030)
102 KOG1240 Protein kinase contain 73.5 28 0.00061 48.2 12.6 156 242-398 440-635 (1431)
103 COG5537 IRR1 Cohesin [Cell div 71.5 5.7 0.00012 50.9 5.4 105 302-410 273-387 (740)
104 PF04826 Arm_2: Armadillo-like 71.3 1.4E+02 0.003 35.5 16.6 106 258-363 130-254 (254)
105 PF12765 Cohesin_HEAT: HEAT re 70.7 5.2 0.00011 34.3 3.5 39 366-404 3-42 (42)
106 KOG1059 Vesicle coat complex A 69.3 52 0.0011 43.6 13.1 165 244-409 163-365 (877)
107 KOG2051 Nonsense-mediated mRNA 69.2 33 0.00072 47.0 11.8 91 245-336 481-578 (1128)
108 KOG2213 Apoptosis inhibitor 5/ 68.5 2.5E+02 0.0053 35.4 17.8 259 300-594 22-303 (460)
109 PF02985 HEAT: HEAT repeat; I 68.4 9.1 0.0002 30.3 4.2 29 382-410 2-30 (31)
110 PF01347 Vitellogenin_N: Lipop 68.0 62 0.0014 42.7 14.4 219 151-406 348-586 (618)
111 COG5181 HSH155 U2 snRNP splice 67.4 2.6E+02 0.0056 36.9 18.2 254 148-410 397-718 (975)
112 KOG1058 Vesicle coat complex C 66.9 4.6E+02 0.01 35.6 31.9 144 256-411 14-165 (948)
113 PF05004 IFRD: Interferon-rela 66.3 1.6E+02 0.0034 36.0 16.2 67 648-714 46-114 (309)
114 PF05641 Agenet: Agenet domain 66.0 10 0.00022 35.7 4.7 35 1380-1415 3-40 (68)
115 PF10363 DUF2435: Protein of u 65.0 22 0.00048 35.7 7.2 84 268-357 9-92 (92)
116 KOG0212 Uncharacterized conser 65.0 4.4E+02 0.0095 34.7 36.3 268 133-411 28-326 (675)
117 KOG1240 Protein kinase contain 65.0 5.1E+02 0.011 37.0 21.2 136 271-411 586-727 (1431)
118 KOG0166 Karyopherin (importin) 64.6 15 0.00033 47.2 7.3 141 262-406 152-305 (514)
119 KOG1991 Nuclear transport rece 64.3 5.7E+02 0.012 35.8 44.5 306 164-486 102-503 (1010)
120 PF14911 MMS22L_C: S-phase gen 63.9 68 0.0015 40.1 12.4 182 97-287 140-370 (373)
121 PF05004 IFRD: Interferon-rela 63.2 1.5E+02 0.0033 36.2 15.2 150 263-412 87-260 (309)
122 KOG1517 Guanine nucleotide bin 62.8 1.7E+02 0.0036 40.8 16.1 121 275-412 613-735 (1387)
123 PF05327 RRN3: RNA polymerase 62.5 75 0.0016 41.9 13.3 188 102-323 31-221 (563)
124 PF14500 MMS19_N: Dos2-interac 62.5 3.3E+02 0.0073 32.5 19.3 64 345-410 2-70 (262)
125 PF13251 DUF4042: Domain of un 62.4 77 0.0017 35.8 11.6 130 278-410 2-175 (182)
126 KOG2025 Chromosome condensatio 62.4 5.4E+02 0.012 34.8 32.4 215 141-409 75-294 (892)
127 PF00567 TUDOR: Tudor domain; 60.8 18 0.00038 36.3 5.8 53 1376-1431 50-103 (121)
128 PF15057 DUF4537: Domain of un 60.6 17 0.00037 38.4 5.7 42 1381-1423 1-42 (124)
129 KOG0915 Uncharacterized conser 59.7 8.1E+02 0.018 36.0 39.1 310 76-411 790-1162(1702)
130 KOG2038 CAATT-binding transcri 59.5 6.1E+02 0.013 34.6 21.8 52 313-366 314-365 (988)
131 PF08167 RIX1: rRNA processing 59.3 67 0.0015 35.5 10.4 138 602-771 19-163 (165)
132 PF05804 KAP: Kinesin-associat 58.3 6.5E+02 0.014 34.5 21.5 165 545-715 464-649 (708)
133 PF03378 CAS_CSE1: CAS/CSE pro 58.1 1.2E+02 0.0025 39.0 13.4 178 74-266 44-242 (435)
134 KOG1241 Karyopherin (importin) 57.1 6.7E+02 0.014 34.2 30.8 157 254-411 355-532 (859)
135 KOG0644 Uncharacterized conser 56.5 12 0.00025 49.7 4.4 46 1377-1422 978-1035(1113)
136 PF12530 DUF3730: Protein of u 55.1 4E+02 0.0087 31.1 17.0 128 626-756 56-190 (234)
137 KOG0211 Protein phosphatase 2A 54.6 40 0.00087 45.6 8.9 135 274-411 210-347 (759)
138 PF11717 Tudor-knot: RNA bindi 54.4 29 0.00063 31.4 5.4 43 1380-1423 3-50 (55)
139 PF05918 API5: Apoptosis inhib 52.7 1.5E+02 0.0032 39.0 13.3 83 274-363 34-116 (556)
140 KOG2393 Transcription initiati 51.5 33 0.00072 43.9 7.0 23 1573-1596 293-315 (555)
141 PF12830 Nipped-B_C: Sister ch 51.5 58 0.0012 36.7 8.4 70 341-411 7-76 (187)
142 KOG0211 Protein phosphatase 2A 51.5 3.6E+02 0.0077 37.1 16.8 139 261-401 275-419 (759)
143 PF05918 API5: Apoptosis inhib 51.3 7.3E+02 0.016 33.0 27.1 121 604-730 20-140 (556)
144 COG5218 YCG1 Chromosome conden 49.9 7.6E+02 0.017 32.8 26.0 195 122-369 66-264 (885)
145 COG5215 KAP95 Karyopherin (imp 49.2 7.7E+02 0.017 32.7 20.7 316 6-369 384-761 (858)
146 KOG2933 Uncharacterized conser 48.7 1.1E+02 0.0023 37.4 10.2 162 244-410 107-278 (334)
147 KOG0166 Karyopherin (importin) 47.1 1.4E+02 0.003 38.8 11.6 169 266-441 70-251 (514)
148 COG5537 IRR1 Cohesin [Cell div 46.9 1.1E+02 0.0024 40.0 10.4 130 272-412 285-428 (740)
149 cd00256 VATPase_H VATPase_H, r 46.4 7.6E+02 0.017 31.8 20.7 64 67-134 65-132 (429)
150 PF13251 DUF4042: Domain of un 46.3 1.3E+02 0.0028 34.1 10.0 98 271-371 49-174 (182)
151 PF08569 Mo25: Mo25-like; Int 46.0 6.8E+02 0.015 31.1 19.0 88 266-354 213-313 (335)
152 PF04118 Dopey_N: Dopey, N-ter 44.5 1.6E+02 0.0034 36.1 11.1 107 251-368 131-251 (307)
153 PLN00104 MYST -like histone ac 42.6 1.3E+02 0.0029 38.4 10.2 46 1377-1422 53-107 (450)
154 KOG1832 HIV-1 Vpr-binding prot 42.1 15 0.00032 49.0 2.1 22 843-864 753-774 (1516)
155 KOG1242 Protein containing ada 41.9 9.9E+02 0.021 31.8 33.1 186 249-442 42-231 (569)
156 KOG2160 Armadillo/beta-catenin 41.3 3E+02 0.0065 34.2 12.6 96 270-370 132-239 (342)
157 KOG2062 26S proteasome regulat 41.2 1.2E+02 0.0025 40.7 9.6 88 278-377 502-590 (929)
158 COG5064 SRP1 Karyopherin (impo 40.7 2E+02 0.0043 35.4 10.7 137 264-407 73-251 (526)
159 PF12530 DUF3730: Protein of u 40.3 6.6E+02 0.014 29.3 16.6 70 249-325 108-178 (234)
160 KOG1077 Vesicle coat complex A 39.9 1.2E+02 0.0025 40.5 9.2 120 246-370 307-432 (938)
161 PF04826 Arm_2: Armadillo-like 39.8 1.2E+02 0.0026 36.0 9.0 135 273-407 24-161 (254)
162 KOG0943 Predicted ubiquitin-pr 38.9 64 0.0014 44.5 6.9 16 959-974 1213-1228(3015)
163 KOG1832 HIV-1 Vpr-binding prot 38.1 19 0.00041 48.1 2.1 22 1182-1203 1123-1144(1516)
164 PF14664 RICTOR_N: Rapamycin-i 37.9 70 0.0015 40.0 7.0 112 263-376 26-142 (371)
165 KOG1243 Protein kinase [Genera 37.7 2.8E+02 0.0062 37.1 12.3 148 256-405 324-472 (690)
166 PF12074 DUF3554: Domain of un 37.1 1.5E+02 0.0033 36.2 9.7 87 319-409 3-90 (339)
167 KOG4413 26S proteasome regulat 37.0 2.3E+02 0.0049 34.8 10.4 129 275-410 53-201 (524)
168 KOG4224 Armadillo repeat prote 36.2 5.1E+02 0.011 32.4 13.2 147 261-410 207-364 (550)
169 KOG2153 Protein involved in th 35.8 1E+02 0.0022 40.7 7.8 52 321-372 303-354 (704)
170 COG5219 Uncharacterized conser 35.1 6.6E+02 0.014 35.0 14.8 194 98-328 1036-1263(1525)
171 KOG1991 Nuclear transport rece 34.4 1.5E+03 0.033 31.9 26.7 86 248-336 445-536 (1010)
172 KOG3026 Splicing factor SPF30 33.8 41 0.00088 39.0 3.6 37 1377-1413 90-126 (262)
173 KOG0915 Uncharacterized conser 33.8 1.9E+03 0.041 32.7 33.1 258 146-411 998-1308(1702)
174 COG5116 RPN2 26S proteasome re 33.8 72 0.0016 41.2 6.0 63 312-377 525-587 (926)
175 KOG0168 Putative ubiquitin fus 33.6 1.2E+03 0.026 32.5 16.8 40 51-90 329-369 (1051)
176 PF08569 Mo25: Mo25-like; Int 33.4 1E+03 0.022 29.6 15.8 167 230-410 50-239 (335)
177 KOG2032 Uncharacterized conser 32.6 3.7E+02 0.0081 34.8 11.8 179 270-457 188-372 (533)
178 KOG0567 HEAT repeat-containing 31.9 1E+03 0.022 28.9 14.6 147 245-412 53-252 (289)
179 KOG2956 CLIP-associating prote 31.7 9.9E+02 0.022 31.0 15.1 162 165-331 302-476 (516)
180 KOG2160 Armadillo/beta-catenin 31.6 3.6E+02 0.0078 33.5 11.3 145 264-411 85-242 (342)
181 KOG2050 Puf family RNA-binding 31.5 7.9E+02 0.017 32.6 14.4 123 399-550 246-376 (652)
182 PF13764 E3_UbLigase_R4: E3 ub 30.3 1.3E+03 0.029 32.1 17.3 164 12-198 44-235 (802)
183 KOG0168 Putative ubiquitin fus 30.2 9.5E+02 0.021 33.3 15.2 183 593-778 243-440 (1051)
184 PF08324 PUL: PUL domain; Int 28.7 2.5E+02 0.0055 33.0 9.4 97 274-370 122-230 (268)
185 PF06972 DUF1296: Protein of u 28.6 93 0.002 29.0 4.3 35 322-360 7-41 (60)
186 cd03568 VHS_STAM VHS domain fa 28.3 1.6E+02 0.0035 32.0 7.0 71 603-677 36-113 (144)
187 PF11707 Npa1: Ribosome 60S bi 27.9 2.4E+02 0.0051 34.7 9.2 132 254-409 48-214 (330)
188 PLN03076 ARF guanine nucleotid 27.8 2.5E+03 0.054 32.3 31.6 157 48-218 1083-1257(1780)
189 PF02237 BPL_C: Biotin protein 27.4 1.5E+02 0.0032 26.1 5.3 39 1380-1421 2-40 (48)
190 PF00514 Arm: Armadillo/beta-c 27.3 96 0.0021 25.9 4.0 29 342-370 12-40 (41)
191 PF08506 Cse1: Cse1; InterPro 27.3 1.2E+03 0.025 29.5 15.1 223 509-747 102-369 (370)
192 PF14228 MOR2-PAG1_mid: Cell m 27.0 2.2E+03 0.047 31.3 28.5 125 278-410 486-611 (1120)
193 cd03561 VHS VHS domain family; 26.9 4.9E+02 0.011 27.6 10.3 81 329-411 26-114 (133)
194 PF11919 DUF3437: Domain of un 26.9 1.4E+02 0.0031 30.1 5.7 57 355-412 2-61 (90)
195 PF14664 RICTOR_N: Rapamycin-i 26.8 1.1E+03 0.024 29.8 14.7 199 204-410 44-270 (371)
196 KOG1820 Microtubule-associated 26.7 1.5E+03 0.033 31.5 16.9 104 306-409 256-365 (815)
197 PF08605 Rad9_Rad53_bind: Fung 26.5 1.1E+02 0.0024 32.9 5.2 49 1391-1442 21-69 (131)
198 PF12830 Nipped-B_C: Sister ch 26.0 5E+02 0.011 29.3 10.6 66 303-373 8-76 (187)
199 KOG1293 Proteins containing ar 25.7 3.2E+02 0.007 36.4 9.9 173 266-449 335-524 (678)
200 KOG3723 PH domain protein Melt 24.9 1.7E+03 0.038 29.5 18.7 49 245-294 182-230 (851)
201 KOG0162 Myosin class I heavy c 24.5 7.3E+02 0.016 33.6 12.5 222 163-413 455-711 (1106)
202 KOG3064 RNA-binding nuclear pr 24.5 26 0.00056 40.9 0.1 18 1610-1627 244-261 (303)
203 PF14911 MMS22L_C: S-phase gen 24.3 6.9E+02 0.015 31.6 12.1 123 18-160 223-347 (373)
204 PF08767 CRM1_C: CRM1 C termin 23.5 5E+02 0.011 31.9 10.8 161 148-312 9-211 (319)
205 PF06685 DUF1186: Protein of u 22.4 9.9E+02 0.021 28.6 12.4 101 244-356 100-203 (249)
206 cd03568 VHS_STAM VHS domain fa 21.8 6.6E+02 0.014 27.4 10.1 74 338-411 33-112 (144)
207 cd06561 AlkD_like A new struct 21.6 3.4E+02 0.0075 30.1 8.3 76 317-400 120-195 (197)
208 cd00280 TRFH Telomeric Repeat 21.5 8.9E+02 0.019 27.9 11.0 103 47-157 30-139 (200)
No 1
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=5.9e-136 Score=1322.04 Aligned_cols=1067 Identities=30% Similarity=0.465 Sum_probs=900.0
Q ss_pred HHHccccCCCCCCHHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhcchhhhcCCCcchHHHHHHHHHHHhhhcCC
Q 000310 10 KEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAP 89 (1680)
Q Consensus 10 ~~~g~kL~~~~~s~~eLlkrLk~L~~~Ls~~dQ~~~~~~~~sl~~~~~~Lv~~~LL~HkD~~Vra~vAcCLadIlRI~AP 89 (1680)
..-|-+....+++++||++||++|++||++++|++ .+++++.|++.+|+++.||+|+|+|||+|||||++||||||||
T Consensus 6 ~~~g~~~~~~~~s~~ell~rLk~l~~~l~~~~qd~--~~~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aP 83 (1266)
T KOG1525|consen 6 YPPGCLTSLNPISKDELLKRLKKLANCLASLDQDN--LDLASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAP 83 (1266)
T ss_pred cCCCCccccCcccHHHHHHHHHHHHHHHhhcccCc--hhHHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCC
Confidence 34456666678999999999999999999999996 6999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHHhhcCCChhhHHH
Q 000310 90 EAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLS 169 (1680)
Q Consensus 90 dAPytd~qLkdIF~l~i~qf~~L~d~~~p~f~q~~~LLe~LA~vks~vl~~DL~~~~Li~~lF~~ff~~v~~~~~~~V~~ 169 (1680)
||||++.||+|||++|++||.||.|+.+|||.||+||||+||.||.|++|.|.+|++++.+||++||++++.+|+.+|.+
T Consensus 84 eaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~ 163 (1266)
T KOG1525|consen 84 EAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFN 163 (1266)
T ss_pred CCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHHHHH
Confidence 99999999999999999999999999999999999999999999955555554599999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCCC-CCCCCchhH
Q 000310 170 SMQTIMIVLLEESEDIQEDLLVILLSALGRNKN---DTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDS-RPGHSHIDY 245 (1680)
Q Consensus 170 ~m~~IL~~vI~Ese~vp~~vLd~IL~~l~~~k~---~~a~~lA~~v~~~~~dkL~~~I~qyf~~il~~d~-~~~~~~~~~ 245 (1680)
|.+||+.+|.|.+.||.++|++||.+|+.++. ..|++||..+|+.|++.+++.|++||++.+.++. ..+....++
T Consensus 164 -~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~ 242 (1266)
T KOG1525|consen 164 -MLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKY 242 (1266)
T ss_pred -HHHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHH
Confidence 99999999999999999999999999976543 3999999999999999999999999999888764 455667789
Q ss_pred HHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHHH
Q 000310 246 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 325 (1680)
Q Consensus 246 h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve 325 (1680)
|++|++||+++|++|++|||||++||+++++.+|+.||.++|+||+.+++.++.+|+++|.+||+||+|++++||++||+
T Consensus 243 he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~ 322 (1266)
T KOG1525|consen 243 HELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVE 322 (1266)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHH
Q 000310 326 HVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLA 405 (1680)
Q Consensus 326 ~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La 405 (1680)
++++||.+||+...+..+..+++.|+.|++++||..+|.++|+++.+.+..++. +|+.|+||+||||+.||++||++|+
T Consensus 323 ~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~La 401 (1266)
T KOG1525|consen 323 SIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLA 401 (1266)
T ss_pred HhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 999999999998888899999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHH-hhhhccCCCcchhccccchHHHhhhhccCCCCc-hhHHHHhhccCcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 000310 406 DIFRG-CCLRNFNGSINQNEFEWIPGKILRCLYDKDFGS-DTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKAL 483 (1680)
Q Consensus 406 ~LY~~-~~~~~~~g~~~~~~~~wIPs~IL~~~Y~nD~~~-~lVE~vL~e~LlP~~~~~~~R~~~ll~l~~~LD~~~~kal 483 (1680)
++|+. ||..+++|...+..|.|||++||++||.++.+. .+||++|+++|+|+++++++|+++|+++|++||..+.++|
T Consensus 402 qlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~~D~~a~kaf 481 (1266)
T KOG1525|consen 402 QLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHLYQLLAGLDLNAHKAF 481 (1266)
T ss_pred HHHHHHHHhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcccHhhhhHH
Confidence 99996 666667777888999999999999999998764 4999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHhh--ccHHHHHHHHHHhcC
Q 000310 484 EKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQL--KDANVWKILMNLLDS 561 (1680)
Q Consensus 484 ~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kL~~~i~~Ls~~fPDp~Ka~~~L~kf~kl--nD~Ri~kLLk~~idp 561 (1680)
..|+++|.++|.+|+.||.++...+.++ .++++...|..++..||||.......++|++. .+..+...+..+..+
T Consensus 482 ~~i~~~q~~ls~~vr~~I~~~k~~~~d~---~~k~i~~~i~~i~~~lpD~~s~~~~~~~f~~~L~~~~~~~s~~~~L~~~ 558 (1266)
T KOG1525|consen 482 NEILKRQSRLSEEVRDYITLSKTPNTDD---SMKKIFSKIVKISENLPDPSSRSYDSMKFADVLETLAKVRSCLVSLDSP 558 (1266)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCccH---hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999988765433 77788888999999999999999999999653 467888899999999
Q ss_pred CCCHHHHHHHHHHHHHHhcC----CCchHHHHHHHHHhhhccccCh-hHHHHHHHHHHhhcc-------cch--hhhHHH
Q 000310 562 NTSFDQAFTGRDDLLKILGA----KHRLYDFLSTLSMKCSYLLFNK-EHVKEILLEVAAQKS-------SAN--AQFMQS 627 (1680)
Q Consensus 562 ~td~~tv~~a~kELlkkL~~----k~~~~d~l~~Ll~R~S~lifNk-s~V~~LL~~v~~~~~-------~~~--~~~~~~ 627 (1680)
..+|.++.-.+++++.+++. +..+..+.+.|+.|..++.+.. +.+..++........ .++ ......
T Consensus 559 ~~~C~~l~~~v~~~l~e~~~~~~s~nlF~~~~~~li~~I~~v~~di~~s~~~~ik~~~~~i~~~~~~l~e~v~~~~a~kl 638 (1266)
T KOG1525|consen 559 SISCKELLITVKEILFELGRKKQSKNLFSSMEKELIERIAEVSLDILESISALIKLNNIVIAEVSLLLLEGVLSEKALKL 638 (1266)
T ss_pred chhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHhcchhhhhHHHHHHHHhhhhhhHHHHHhhcccccchhhHHhH
Confidence 88888776556666666654 3457788899999999987777 777777764332111 111 122345
Q ss_pred HHHHHHHHHhhCCcCcccc--HHHHHHHHhhccccchHhHHHHHHHhhcchhhhhhcccchHHHHHHHHhhcCChHHHHH
Q 000310 628 CMDILGILARFSPLLLGGT--EEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKY 705 (1680)
Q Consensus 628 a~eLL~~IS~~~P~lFk~~--v~~Li~lL~~~~~~~~~~aLkiLak~~k~~~e~~~~~~s~l~~~L~~lal~GtpkqAKy 705 (1680)
...||.++|..+|.+|... +..++..+.+..+...+.+|+.+...|.......+...+.+...+.+++..|+|.+||+
T Consensus 639 ~~~lle~ls~~~~~~~~~s~~v~~i~~~~~~~~~~~~~~vLk~~~~~~~~~~~~~~si~~~~~~~~~~~~~~g~~~q~k~ 718 (1266)
T KOG1525|consen 639 KKYLLEALSSIHPDLFKYSESVLSILEKLFSEPDVVAPVVLKKLESQGKKIEVEAPSILSTLSRVLAKKELSGTPEQAKL 718 (1266)
T ss_pred HHHHHHHhhhcCcchhhhhHHHHHHHHHhccchhhhhHHHHHHHHhccccccccchhhhcchhhhhhHHHHcCCcchhHH
Confidence 6789999999999988876 46666666665556778899999888854444455566778999999999999999999
Q ss_pred HHHHHHhhcCCCccchHHHHHHHHHHhhhhc-----CCCchHHHHHHHHHhhcccccccc-hHHHHHHHHHhhhcccccc
Q 000310 706 AVHALAAITKDDGLKSLSVLYKRLVDMLEEK-----THLPAVLQSLGCIAQTAMPVFETR-ESEIEEFIKSKILRCSNKI 779 (1680)
Q Consensus 706 AVr~Laa~~~~~~~~~~~~L~~~L~~~L~~~-----~~l~t~L~sL~~Iaq~aP~vfe~~-~~eI~~fiik~ILl~~~~~ 779 (1680)
|++|+.++...+.. .+.+++..+.+.+... .++.+.+.+||+|+.+.|..|.+. ...+..||+|+++..++.+
T Consensus 719 ~~~~i~~~~~s~~~-~l~q~~~~~~d~l~~~~~~~~e~~~~~i~~lgei~~~~p~~~~~~~k~~~~~~IvK~~~~~~~~~ 797 (1266)
T KOG1525|consen 719 AKRCIKAILQSKFC-KLKQTFEEIKDNLLEDLTSELEGLRTPIVTLGEIFLDLPSQFLDPLKSDVAKFIVKKVLSNDDSP 797 (1266)
T ss_pred HhhhhhHHhhhhhh-HHHHHhhhhHHHHhhhhhhhhhccccchhhhhhHhhhccHhhcchhhhhhHHHHHHHHhcCCCcc
Confidence 99999988876522 3445666677766433 499999999999999999666554 7889999999998888887
Q ss_pred CCC-CCCCCCCc----hhhHHHHHHHHHHHHHhhcCCCcccc--ccchHHHHHHHHHhh-ccCccccCCCCChhhHhHhH
Q 000310 780 RND-TKACWDDR----SELCLLKIYGIKTLVKSYLPVKDAHI--RPGIDDLLGILKSML-SYGEMSEDIESSSVDKAHLR 851 (1680)
Q Consensus 780 ~~~-~~~~W~d~----se~~~aKi~aLK~Lvn~ll~~~~~~~--~~~i~~ll~lL~~il-~~GEi~~~~~tp~~~ksrLR 851 (1680)
++. ....|+.. +..+.+|+++++++++||++...+.- +-.+...+.+|..++ +.|+...+..+|..++++||
T Consensus 798 ~e~~~~~~~~P~~~~~~p~~~~k~~a~~L~~~~l~~~~~d~~~~e~s~~~~~~~L~~ll~~~gdl~~~~~~~~~~~sklr 877 (1266)
T KOG1525|consen 798 GEKNKSKEWLPSDKLLSPNTSLKVLAIKLLVRRLLDLEEDKEKDELSTPRSFRLLSKLLNSEGDLTEQNRDPKSDQSKLR 877 (1266)
T ss_pred ccccCccccCCcccccchhhhhHHHHHHHhhhhccccccCcchhhhcchhHHHHHHHHHhhcCCCCcccCCcchhhhhhh
Confidence 765 66778662 45688899999999999999866421 111122566777765 69999999889999999999
Q ss_pred HHHHHHHHHhhhc--cCCCCCHHHHHHHhhcccCCchhHHHHHHHHHHHhHhcCCCchhhHHHHHhhhccCCCCchHHH-
Q 000310 852 LASAKAVLRLSRQ--WDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEE- 928 (1680)
Q Consensus 852 LaAa~~lLKLAr~--~d~~i~~d~f~l~~l~~qD~~~~VR~~Fl~KL~kyL~~~~Lp~kY~~lf~la~~a~ep~~~~e~- 928 (1680)
+.|+.++||||.. +..++.++.|..+.+.++|++++||..|+.||++++....+|.-|++.|.+++.+... ....
T Consensus 878 ~~a~~~ilKl~~~~~~~e~~~~~~~~~~~~~i~de~~~vR~~f~~kl~k~l~~i~lp~~~~a~~~l~~~d~~~--~~~~~ 955 (1266)
T KOG1525|consen 878 LTAKITILKLASEKSYHEFINAEQYEKLILLISDECLQVRLVFLLKLHKGLSRIKLPLEYMAKFKLCAPDVSK--ELLAN 955 (1266)
T ss_pred hhhhheeeecccccchhccCCHHHHHHHHHHhcCCchhHHHHHHHHccccccccccchhhhhHHHHhccchhh--hhhhH
Confidence 9999999999976 5788899999888888999999999999999999999999999999999885422111 0000
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccccccccCCchhhhHHHHhhccCCCCCCcchhhcHHHHHHHHHHHHHHHHHhhccCcc
Q 000310 929 KQNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDED 1008 (1680)
Q Consensus 929 K~~l~~~I~~~~~~r~r~~s~~s~~~~~~~~pEy~LprLIHlLAHH~~Pd~ee~~d~~a~~~~~~~L~F~L~~L~~~~~~ 1008 (1680)
+....+-...+++.+.....+.++.. ....|||+.+|.+|++||| |++....++..|-.+..++||.++.|...
T Consensus 956 ~~~~~t~~~~~~r~~t~~e~~~s~~~-~~~~~e~V~~~~~~~la~d--~~~~~~edv~~l~~~ke~~~~vl~~l~~~--- 1029 (1266)
T KOG1525|consen 956 KREEETKNSASRREQTKFERATSDGT-LAHLPEYVGSYVIHLLAHD--PDFVKAEDVDSLSDLKECLWFVLEDLDEE--- 1029 (1266)
T ss_pred HHHhhhhcchhhhhhhhhhhccCchh-hhhhhHHhhhhhhhhhccC--ccccccchhhhHHHHHHhHHHHHhhhhhh---
Confidence 11111112222222333333333221 5688999999999999999 99998889999999999999999999532
Q ss_pred ccccccccchH--HHHHHHHHHhhcccccccc---ccCcchHHHHHHHHHHHHHHhc-cCCCCcccccccCCCccccCCC
Q 000310 1009 VKSEASNKESI--SVIISIFRSIKCSEDIVDA---AKSKNSHAICDLGLSITKRLSR-MEDNSQGVFSSVSLPSTLYKPY 1082 (1680)
Q Consensus 1009 ~~~~~~~~eNi--SlLy~La~rIKq~rDa~d~---~~S~nlY~LcDLAq~IIk~~a~-k~W~lq~yPGkV~LPs~LF~p~ 1082 (1680)
.+|+ .+.-.+.+-+++.+|...+ ..+..||+|||+|+.|+..... .+|...+|||+++||..+|.+.
T Consensus 1030 -------~~n~~~~~~~~~~~~~~~~~d~~s~~d~~~~~kl~~l~d~a~~i~~sk~~~~s~~~tt~~~~~~lp~~~~~~~ 1102 (1266)
T KOG1525|consen 1030 -------NENNQHKFWKREKEEIKGSEDEESPDDVGDNIKLYTLCDLAQCIILSKSTKFSNSSTTSPGKLNLPALSFTSP 1102 (1266)
T ss_pred -------hccchhHHHHHHHhhhhcchhhcCCcccCCCceeeeHHhHHHHHHhcccccccCCCCCCCccccCchhhhCCc
Confidence 1222 2333344456667777643 3456799999999999998775 6799999999999999999998
Q ss_pred CCCCcccccccccccccccchh
Q 000310 1083 EKKEGDDSLASERQTWLADESV 1104 (1680)
Q Consensus 1083 ~s~~~~~a~~~~~K~yLpde~~ 1104 (1680)
.+ .+ -...++|+|+++-
T Consensus 1103 ~~----kn-~~~~k~~i~e~~~ 1119 (1266)
T KOG1525|consen 1103 KD----KN-FINNKIYIPEETE 1119 (1266)
T ss_pred ch----hh-hccccccCCchhc
Confidence 64 22 2468999999943
No 2
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=5.7e-14 Score=186.16 Aligned_cols=490 Identities=17% Similarity=0.133 Sum_probs=250.7
Q ss_pred CcCccccHHHHHHHHhhccccchHhHHHHHHHhhcchhhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCcc
Q 000310 640 PLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGL 719 (1680)
Q Consensus 640 P~lFk~~v~~Li~lL~~~~~~~~~~aLkiLak~~k~~~e~~~~~~s~l~~~L~~lal~GtpkqAKyAVr~Laa~~~~~~~ 719 (1680)
+.+|..-+..|+..|.. ..+.++..++..++.............++..|-++..+..||.+.+|..+..+...
T Consensus 583 ~nlF~~~~~~li~~I~~-------v~~di~~s~~~~ik~~~~~i~~~~~~l~e~v~~~~a~kl~~~lle~ls~~~~~~~~ 655 (1266)
T KOG1525|consen 583 KNLFSSMEKELIERIAE-------VSLDILESISALIKLNNIVIAEVSLLLLEGVLSEKALKLKKYLLEALSSIHPDLFK 655 (1266)
T ss_pred cchHHHHHHHHHHHhcc-------hhhhhHHHHHHHHhhhhhhHHHHHhhcccccchhhHHhHHHHHHHHhhhcCcchhh
Confidence 45888888888888775 34555555554444333333334455566788888889999999999977765432
Q ss_pred chHHHHHHHHHHhhh--hcCCCchHHHHHHHHHhhcccccccchHHHHHHHHHhhhccccccCCCCCCCCCCchhhHHHH
Q 000310 720 KSLSVLYKRLVDMLE--EKTHLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLK 797 (1680)
Q Consensus 720 ~~~~~L~~~L~~~L~--~~~~l~t~L~sL~~Iaq~aP~vfe~~~~eI~~fiik~ILl~~~~~~~~~~~~W~d~se~~~aK 797 (1680)
.+..+..|+..+. ....-|.+|+.+.+++ +.+-......+..++-.-.....+...+..+..|..-...++.+
T Consensus 656 --~s~~v~~i~~~~~~~~~~~~~~vLk~~~~~~---~~~~~~~~si~~~~~~~~~~~~~~g~~~q~k~~~~~i~~~~~s~ 730 (1266)
T KOG1525|consen 656 --YSESVLSILEKLFSEPDVVAPVVLKKLESQG---KKIEVEAPSILSTLSRVLAKKELSGTPEQAKLAKRCIKAILQSK 730 (1266)
T ss_pred --hhHHHHHHHHHhccchhhhhHHHHHHHHhcc---ccccccchhhhcchhhhhhHHHHcCCcchhHHHhhhhhHHhhhh
Confidence 2233444444432 2237788999998888 33333322223233221111111111122333343333333333
Q ss_pred HHHHHHHHHhhcCCCccccccchHHHHHHHHHhhccCccccCCCCChhhHhHhHHHHHHHHHHhhhccCCCCCHHHHHHH
Q 000310 798 IYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLT 877 (1680)
Q Consensus 798 i~aLK~Lvn~ll~~~~~~~~~~i~~ll~lL~~il~~GEi~~~~~tp~~~ksrLRLaAa~~lLKLAr~~d~~i~~d~f~l~ 877 (1680)
.. .+.+......+..........-.+...++.-|++... .|++.+..++..++..|+|.. .+....+.+.+.-.
T Consensus 731 ~~---~l~q~~~~~~d~l~~~~~~~~e~~~~~i~~lgei~~~--~p~~~~~~~k~~~~~~IvK~~-~~~~~~~~e~~~~~ 804 (1266)
T KOG1525|consen 731 FC---KLKQTFEEIKDNLLEDLTSELEGLRTPIVTLGEIFLD--LPSQFLDPLKSDVAKFIVKKV-LSNDDSPGEKNKSK 804 (1266)
T ss_pred hh---HHHHHhhhhHHHHhhhhhhhhhccccchhhhhhHhhh--ccHhhcchhhhhhHHHHHHHH-hcCCCccccccCcc
Confidence 33 2233333333221111111222333334455777654 458999999999999999998 66666655655222
Q ss_pred hhcccCCchhHHHHHHHHHHHhHhcCCCchhhHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHhhhhhcccccccc
Q 000310 878 LRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADIIQMHHQMKARQISVQSDANSFA 957 (1680)
Q Consensus 878 ~l~~qD~~~~VR~~Fl~KL~kyL~~~~Lp~kY~~lf~la~~a~ep~~~~e~K~~l~~~I~~~~~~r~r~~s~~s~~~~~~ 957 (1680)
.++..+.. ++.-+++-++.. .-+.. + ......+ .
T Consensus 805 ~~~P~~~~-------------------~~p~~~~k~~a~-------------~L~~~--------~--l~~~~~d----~ 838 (1266)
T KOG1525|consen 805 EWLPSDKL-------------------LSPNTSLKVLAI-------------KLLVR--------R--LLDLEED----K 838 (1266)
T ss_pred ccCCcccc-------------------cchhhhhHHHHH-------------HHhhh--------h--ccccccC----c
Confidence 23222211 111111111100 00000 0 0000000 1
Q ss_pred CCchhhhHH---HHhhccCCCCCCcchhhcHHHHHHHHHHHHHHHHHhhccCccccccccccchHHHHHHHHHHhhcccc
Q 000310 958 TYPEYIIPY---LVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIISIFRSIKCSED 1034 (1680)
Q Consensus 958 ~~pEy~Lpr---LIHlLAHH~~Pd~ee~~d~~a~~~~~~~L~F~L~~L~~~~~~~~~~~~~~eNiSlLy~La~rIKq~rD 1034 (1680)
...|+..+| +|..|.|-..+.-....+-.... .++. ..+ ..-+..+ ..++.+..
T Consensus 839 ~~~e~s~~~~~~~L~~ll~~~gdl~~~~~~~~~~~---sklr----~~a---------------~~~ilKl-~~~~~~~e 895 (1266)
T KOG1525|consen 839 EKDELSTPRSFRLLSKLLNSEGDLTEQNRDPKSDQ---SKLR----LTA---------------KITILKL-ASEKSYHE 895 (1266)
T ss_pred chhhhcchhHHHHHHHHHhhcCCCCcccCCcchhh---hhhh----hhh---------------hheeeec-ccccchhc
Confidence 222333333 55555555211111111101110 0000 000 0001111 12333333
Q ss_pred ccccccCcchHHHHHHHHHHHH-------HHhccCCCCcccccccCCCccccCCCCCCCcccccccccccccccchhhhh
Q 000310 1035 IVDAAKSKNSHAICDLGLSITK-------RLSRMEDNSQGVFSSVSLPSTLYKPYEKKEGDDSLASERQTWLADESVLTH 1107 (1680)
Q Consensus 1035 a~d~~~S~nlY~LcDLAq~IIk-------~~a~k~W~lq~yPGkV~LPs~LF~p~~s~~~~~a~~~~~K~yLpde~~l~~ 1107 (1680)
. .+-...+.+++.+.. .++.+ ++.+--++.||..+... .+-|.|+.....+
T Consensus 896 ~------~~~~~~~~~~~~i~de~~~vR~~f~~k---l~k~l~~i~lp~~~~a~-------------~~l~~~d~~~~~~ 953 (1266)
T KOG1525|consen 896 F------INAEQYEKLILLISDECLQVRLVFLLK---LHKGLSRIKLPLEYMAK-------------FKLCAPDVSKELL 953 (1266)
T ss_pred c------CCHHHHHHHHHHhcCCchhHHHHHHHH---ccccccccccchhhhhH-------------HHHhccchhhhhh
Confidence 3 344455555555443 22221 22222336666643222 3445556555556
Q ss_pred hhhhcccccccccc--hhhhcccccccccCCCccchhHHHHHhhcccccCCccccccCchhhhccCCCchhhhhhhhhcc
Q 000310 1108 FESLKLETHEVVGS--EIARHEALDDLEKDGNEVPLGKMIQQLKSQGAKGGKAKKKKSSPAEVKGTENDVDILQMVREIN 1185 (1680)
Q Consensus 1108 ~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1185 (1680)
.......+.+.++. ++....+. .+|- +.++-++.-++.+-..++.++.+++| ||+.|.++++++
T Consensus 954 ~~~~~~~t~~~~~~r~~t~~e~~~----s~~~----~~~~~e~V~~~~~~~la~d~~~~~~e------dv~~l~~~ke~~ 1019 (1266)
T KOG1525|consen 954 ANKREEETKNSASRREQTKFERAT----SDGT----LAHLPEYVGSYVIHLLAHDPDFVKAE------DVDSLSDLKECL 1019 (1266)
T ss_pred hHHHHhhhhcchhhhhhhhhhhcc----Cchh----hhhhhHHhhhhhhhhhccCccccccc------hhhhHHHHHHhH
Confidence 66666666666654 22222222 3343 77888888888888889999998888 999999999999
Q ss_pred cccccCccccccCCCCCCCCcccccchhhHHHHhhccCCcccc-cccCccccccccCCCCCCCCCCCC
Q 000310 1186 LDNLGVLNKFESSNGHKHFPSKQIKVDLENEEIKKRKATDVTS-FPVPKRRRSLSAHGGFRTPKSNSK 1252 (1680)
Q Consensus 1186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 1252 (1680)
+.-+..++.++.+|+|.+....+.+-..-....-.+.+++.++ +.|+.+.+.+..+.+..++.++.+
T Consensus 1020 ~~vl~~l~~~~~n~~~~~~~~~~~~~~~~~d~~s~~d~~~~~kl~~l~d~a~~i~~sk~~~~s~~~tt 1087 (1266)
T KOG1525|consen 1020 WFVLEDLDEENENNQHKFWKREKEEIKGSEDEESPDDVGDNIKLYTLCDLAQCIILSKSTKFSNSSTT 1087 (1266)
T ss_pred HHHHhhhhhhhccchhHHHHHHHhhhhcchhhcCCcccCCCceeeeHHhHHHHHHhcccccccCCCCC
Confidence 9999999999999999877555443222222222244444444 678888888888877777766655
No 3
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=98.97 E-value=9.9e-10 Score=96.08 Aligned_cols=45 Identities=33% Similarity=0.600 Sum_probs=36.8
Q ss_pred ccccceEEEecCCCCceEEEEEEEecCCCCeeEEEccCCcceeee
Q 000310 1378 DLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLR 1422 (1680)
Q Consensus 1378 ~lvG~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdDgd~E~l~ 1422 (1680)
--.|.+|++|||+++.||+|.|++||+.++.|+|.|+||++..|.
T Consensus 6 ~~~Ge~V~~rWP~s~lYYe~kV~~~d~~~~~y~V~Y~DGtel~lk 50 (55)
T PF09465_consen 6 FAIGEVVMVRWPGSSLYYEGKVLSYDSKSDRYTVLYEDGTELELK 50 (55)
T ss_dssp S-SS-EEEEE-TTTS-EEEEEEEEEETTTTEEEEEETTS-EEEEE
T ss_pred ccCCCEEEEECCCCCcEEEEEEEEecccCceEEEEEcCCCEEEec
Confidence 348999999999999999999999999999999999999995443
No 4
>PTZ00429 beta-adaptin; Provisional
Probab=98.61 E-value=0.00013 Score=95.96 Aligned_cols=392 Identities=12% Similarity=0.059 Sum_probs=208.7
Q ss_pred ccccCCChHHHHHHHH-HHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHH
Q 000310 269 GELLTDQLDTRLKAVG-LVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTAL 347 (1680)
Q Consensus 269 ~EL~sed~~~Rl~At~-llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L 347 (1680)
.+|.+.+...|+.|++ +++-|.-+ -+...-|+++-+.+ .=.+..+|.-+--++..+...+|+ .+--.++.|
T Consensus 39 ~~L~s~~~~~kk~alKkvIa~mt~G--~DvS~LF~dVvk~~----~S~d~elKKLvYLYL~~ya~~~pe--lalLaINtl 110 (746)
T PTZ00429 39 NDLNGTDSYRKKAAVKRIIANMTMG--RDVSYLFVDVVKLA----PSTDLELKKLVYLYVLSTARLQPE--KALLAVNTF 110 (746)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHCC--CCchHHHHHHHHHh----CCCCHHHHHHHHHHHHHHcccChH--HHHHHHHHH
Confidence 3444566777777765 66666543 35555556655543 344778888777776665555553 233568999
Q ss_pred HhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhcccc
Q 000310 348 CDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEW 427 (1680)
Q Consensus 348 ~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~g~~~~~~~~w 427 (1680)
.+=|.|+++-||.-|+.++|.+-... +-+.++..+..-+.|+.+-||+.|.-+++++|+..- .....-+|
T Consensus 111 ~KDl~d~Np~IRaLALRtLs~Ir~~~---i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p-------elv~~~~~ 180 (746)
T PTZ00429 111 LQDTTNSSPVVRALAVRTMMCIRVSS---VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM-------QLFYQQDF 180 (746)
T ss_pred HHHcCCCCHHHHHHHHHHHHcCCcHH---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc-------ccccccch
Confidence 99999999999999888886654433 223355667777899999999999999999999642 11123456
Q ss_pred chHHHhhhhccCCCCchhHHHHhhccCcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000310 428 IPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMH 507 (1680)
Q Consensus 428 IPs~IL~~~Y~nD~~~~lVE~vL~e~LlP~~~~~~~R~~~ll~l~~~LD~~~~kal~~il~~k~~l~~~~~~~l~l~~~~ 507 (1680)
+|. +..+..+.|.. .+-.. +..|..+.. -++. .+. + ....+++++......
T Consensus 181 ~~~-L~~LL~D~dp~--Vv~nA---------------l~aL~eI~~-~~~~---~l~-l------~~~~~~~Ll~~L~e~ 231 (746)
T PTZ00429 181 KKD-LVELLNDNNPV--VASNA---------------AAIVCEVND-YGSE---KIE-S------SNEWVNRLVYHLPEC 231 (746)
T ss_pred HHH-HHHHhcCCCcc--HHHHH---------------HHHHHHHHH-hCch---hhH-H------HHHHHHHHHHHhhcC
Confidence 653 44443333322 11111 001111111 0110 000 0 111122222221111
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCc--h
Q 000310 508 QDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHR--L 585 (1680)
Q Consensus 508 ~~~d~~ei~~kL~~~i~~Ls~~fPDp~Ka~~~L~kf~klnD~Ri~kLLk~~idp~td~~tv~~a~kELlkkL~~k~~--~ 585 (1680)
+ +=.|-. +++.|+..-|+. -.++......++.+|...++ +
T Consensus 232 ---~-EW~Qi~---IL~lL~~y~P~~-------------------------------~~e~~~il~~l~~~Lq~~N~AVV 273 (746)
T PTZ00429 232 ---N-EWGQLY---ILELLAAQRPSD-------------------------------KESAETLLTRVLPRMSHQNPAVV 273 (746)
T ss_pred ---C-hHHHHH---HHHHHHhcCCCC-------------------------------cHHHHHHHHHHHHHhcCCCHHHH
Confidence 0 111111 223333322221 11122233444444544333 5
Q ss_pred HHHHHHHHHhhhccccChhHHHHHHHHHHhh---cccchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccccch
Q 000310 586 YDFLSTLSMKCSYLLFNKEHVKEILLEVAAQ---KSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIK 662 (1680)
Q Consensus 586 ~d~l~~Ll~R~S~lifNks~V~~LL~~v~~~---~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v~~Li~lL~~~~~~~~ 662 (1680)
++.++.+++-..+. +.+.+..++.++... -........-.+.+-|..|...+|.+|..+.+.+.-...|.. .+.
T Consensus 274 l~Aik~il~l~~~~--~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~-yIK 350 (746)
T PTZ00429 274 MGAIKVVANLASRC--SQELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPP-FVK 350 (746)
T ss_pred HHHHHHHHHhcCcC--CHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcH-HHH
Confidence 66666665443322 444444444333210 001111122345667788899999999987655543334332 367
Q ss_pred HhHHHHHHHhhcchhhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhhcC-CCch
Q 000310 663 EGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT-HLPA 741 (1680)
Q Consensus 663 ~~aLkiLak~~k~~~e~~~~~~s~l~~~L~~lal~GtpkqAKyAVr~Laa~~~~~~~~~~~~L~~~L~~~L~~~~-~l~t 741 (1680)
...|.+|+..+.. ++ -..+..-|..|+.+-++.-++.||++|+.+.-.- ......++..|++-+..+. ....
T Consensus 351 ~~KLeIL~~Lane--~N----v~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~-~~~a~~cV~~Ll~ll~~~~~~v~e 423 (746)
T PTZ00429 351 LEKLRLLLKLVTP--SV----APEILKELAEYASGVDMVFVVEVVRAIASLAIKV-DSVAPDCANLLLQIVDRRPELLPQ 423 (746)
T ss_pred HHHHHHHHHHcCc--cc----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHhcCCchhHHH
Confidence 7889999887632 11 1235566788898888999999999988666421 1223344555555554322 2223
Q ss_pred HHHHHHHHHhhccc
Q 000310 742 VLQSLGCIAQTAMP 755 (1680)
Q Consensus 742 ~L~sL~~Iaq~aP~ 755 (1680)
.+.++-.|.+..|.
T Consensus 424 ~i~vik~IlrkyP~ 437 (746)
T PTZ00429 424 VVTAAKDIVRKYPE 437 (746)
T ss_pred HHHHHHHHHHHCcc
Confidence 45555566665664
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=0.00058 Score=90.28 Aligned_cols=532 Identities=15% Similarity=0.161 Sum_probs=284.4
Q ss_pred hHHHHHHHHHhhcchhhhhhhhhhccccc-CCChHHHHHHHHHHHHhhcCCCCChhh-hcHHHHHHHHhh-hcCCChhHH
Q 000310 244 DYHEVIYDVYRCSPQILSGVVPYLTGELL-TDQLDTRLKAVGLVGDLFAVPGSANNE-QFHSVFSEFLKR-LTDRIVAVR 320 (1680)
Q Consensus 244 ~~h~Li~eL~~~~P~lL~~ViP~Le~EL~-sed~~~Rl~At~llG~mfs~~~s~~a~-~y~~~w~~fL~R-~~D~s~~VR 320 (1680)
.+-+.+..+|+--| ++|.|.+-+. +.++++|..|.-++-|+++..-..+.. .-.++=...|.- ..-..+.||
T Consensus 23 ~Ae~~l~~~~~~~~-----~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E~~~~vr 97 (1075)
T KOG2171|consen 23 QAEEALETLAKTEP-----LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQSETEPSVR 97 (1075)
T ss_pred HHHHHHHHhhcccc-----hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhccchHHH
Confidence 46777778898888 7777787777 779999999999999998764323322 222222222222 245788999
Q ss_pred HHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCH---HHHHHHHHhhccCChhHH
Q 000310 321 MSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV---ETVKLVAERLRDKSVLVK 397 (1680)
Q Consensus 321 ~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~---elL~~LaeR~RDKK~~VR 397 (1680)
.+..+.+..|-.+--.. .-++++..|..+..++|+..|-.|+-.+..+...-...... +++..+..-|-|-...||
T Consensus 98 ~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr 176 (1075)
T KOG2171|consen 98 HKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVR 176 (1075)
T ss_pred HHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHH
Confidence 99999888876654221 45799999999999999999999999988876543333332 667788899999999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCcchhcc-ccchHHHhhhhccCCCCchhHHHHhhccCcCCCCCHHHHHHHHHHHHhcCC
Q 000310 398 RYTMERLADIFRGCCLRNFNGSINQNEF-EWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFD 476 (1680)
Q Consensus 398 ~eAm~~La~LY~~~~~~~~~g~~~~~~~-~wIPs~IL~~~Y~nD~~~~lVE~vL~e~LlP~~~~~~~R~~~ll~l~~~LD 476 (1680)
-.|.++++.+.... ++++.....| .-+|+-|.-+-- .++.. ..+....+|
T Consensus 177 ~~a~rA~~a~~~~~----~~~~~~~~~~~~llP~~l~vl~~----------------~i~~~-----d~~~a~~~l---- 227 (1075)
T KOG2171|consen 177 VAAVRALGAFAEYL----ENNKSEVDKFRDLLPSLLNVLQE----------------VIQDG-----DDDAAKSAL---- 227 (1075)
T ss_pred HHHHHHHHHHHHHh----ccchHHHHHHHHHhHHHHHHhHh----------------hhhcc-----chHHHHHHH----
Confidence 99999999876542 1233333444 455655543310 00000 000000111
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHhh--hcCCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhccHHHHH
Q 000310 477 RIEMKALEKILEQKQR-LQQEMQRYLSLRQM--HQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWK 553 (1680)
Q Consensus 477 ~~~~kal~~il~~k~~-l~~~~~~~l~l~~~--~~~~d~~ei~~kL~~~i~~Ls~~fPDp~Ka~~~L~kf~klnD~Ri~k 553 (1680)
++|..++..-.+ ++..+...|+++-. .+..-++.+....-.+|-+++..-|-..|- ...+-++=+-.
T Consensus 228 ----~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~------~~~~~~~lv~~ 297 (1075)
T KOG2171|consen 228 ----EALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKK------LALLGHTLVPV 297 (1075)
T ss_pred ----HHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhh------chhhhccHHHH
Confidence 111111111111 22233333344321 111222334433344455555553332222 22222222222
Q ss_pred HHHHHhcCC-----------------CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhccccChhHHHHHHHHHHhh
Q 000310 554 ILMNLLDSN-----------------TSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQ 616 (1680)
Q Consensus 554 LLk~~idp~-----------------td~~tv~~a~kELlkkL~~k~~~~d~l~~Ll~R~S~lifNks~V~~LL~~v~~~ 616 (1680)
++.-+.+.+ +.+.-+..+.+-+-..||++..+.-++. +++.++.
T Consensus 298 ~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~--------------~l~~~l~----- 358 (1075)
T KOG2171|consen 298 LLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFE--------------ALEAMLQ----- 358 (1075)
T ss_pred HHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHH--------------HHHHHhc-----
Confidence 333222222 2333344444555555555433222222 1222221
Q ss_pred cccchhhhHHHHHHHHHHHHhhCCcCccccHHHHHH----HHhhccccchHhHHHHHHHhhcchhhhhhccc-chHHHH-
Q 000310 617 KSSANAQFMQSCMDILGILARFSPLLLGGTEEELVN----LLKEENEIIKEGILHVLAKAGGTIREQLAATS-SSVDLL- 690 (1680)
Q Consensus 617 ~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v~~Li~----lL~~~~~~~~~~aLkiLak~~k~~~e~~~~~~-s~l~~~- 690 (1680)
+.+-.....++--|-.|+.=|+.+..++..+++. .|.|..|.+...++.++.+.+..+...+.... +.+.+.
T Consensus 359 --S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL 436 (1075)
T KOG2171|consen 359 --STEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPAL 436 (1075)
T ss_pred --CCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHH
Confidence 2221222334444555666666666666555544 45556677888899999776644321111101 112212
Q ss_pred HHHHhhcCChHHHHHHHHHHHhhcCCCccc----hHHHHHHHHHHhhhhc-C--CCchHHHHHHHHHhhcccccccchHH
Q 000310 691 LERLCLEGSRRQAKYAVHALAAITKDDGLK----SLSVLYKRLVDMLEEK-T--HLPAVLQSLGCIAQTAMPVFETRESE 763 (1680)
Q Consensus 691 L~~lal~GtpkqAKyAVr~Laa~~~~~~~~----~~~~L~~~L~~~L~~~-~--~l~t~L~sL~~Iaq~aP~vfe~~~~e 763 (1680)
+..+-..++++.-.||+.+|....-.-... ++..|++.....|..+ + -...++++||.+|.-+-.-|..+-+.
T Consensus 437 ~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~ 516 (1075)
T KOG2171|consen 437 IALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDR 516 (1075)
T ss_pred HHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHH
Confidence 222334577888889988887544322112 3333444333334322 2 44557889999999998889998889
Q ss_pred HHHHHHHhhhccccccCCCCCCCCCCchhhHHHHHHHHHHHHHhhcCCCccccccchHHHHHHHHHhhccCccccCCC-C
Q 000310 764 IEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIE-S 842 (1680)
Q Consensus 764 I~~fiik~ILl~~~~~~~~~~~~W~d~se~~~aKi~aLK~Lvn~ll~~~~~~~~~~i~~ll~lL~~il~~GEi~~~~~-t 842 (1680)
++.++. ++|..+.. ++-.+.+.|. +.|+.-.-++...+...+.+..++.+|-.+- +|+.....+ +
T Consensus 517 ~Mp~L~-~~L~n~~~----------~d~r~Lrgkt--mEcisli~~AVGke~F~~~a~eliqll~~~~-~~~~~~dd~~~ 582 (1075)
T KOG2171|consen 517 LMPLLK-NFLQNADD----------KDLRELRGKT--MECLSLIARAVGKEKFLPLAEELIQLLLELQ-GSDQDDDDPLR 582 (1075)
T ss_pred HHHHHH-HHHhCCCc----------hhhHHHHhhH--HHHHHHHHHHhhhhhhhHhHHHHHHHHHhhc-ccchhhccccH
Confidence 999875 45443321 1122333343 5555544445544556677777887765432 334333222 2
Q ss_pred ChhhHhHhHHHHH
Q 000310 843 SSVDKAHLRLASA 855 (1680)
Q Consensus 843 p~~~ksrLRLaAa 855 (1680)
+....+|-|++-+
T Consensus 583 sy~~~~warmc~i 595 (1075)
T KOG2171|consen 583 SYMIAFWARMCRI 595 (1075)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555443
No 6
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.30 E-value=0.061 Score=73.25 Aligned_cols=136 Identities=21% Similarity=0.282 Sum_probs=100.9
Q ss_pred ChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcC
Q 000310 296 ANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN 375 (1680)
Q Consensus 296 ~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~ 375 (1680)
.|...|....+.-|+=..--.+.||..+++|...|....|.-.-..++-.++..|++|+---||-|||.-|+.......+
T Consensus 809 ~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e 888 (1692)
T KOG1020|consen 809 SFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPE 888 (1692)
T ss_pred HHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHH
Confidence 46666666666666666677889999999999888877776333357888999999999999999999988765544433
Q ss_pred CCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhccccchHHHhhhh-ccCCCCc
Q 000310 376 SIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCL-YDKDFGS 443 (1680)
Q Consensus 376 ~V~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~g~~~~~~~~wIPs~IL~~~-Y~nD~~~ 443 (1680)
.+ .+....+++|+.|--..||+.||+.|-.+|-.+ +.|.-||..+-... .++|-+.
T Consensus 889 ~~-~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~-----------pdf~~i~~~cakmlrRv~DEEg 945 (1692)
T KOG1020|consen 889 LI-FQYYDQIIERILDTGVSVRKRVIKILRDICEET-----------PDFSKIVDMCAKMLRRVNDEEG 945 (1692)
T ss_pred HH-HHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhC-----------CChhhHHHHHHHHHHHhccchh
Confidence 32 334568899999999999999999999999874 34666666555443 3566553
No 7
>PTZ00429 beta-adaptin; Provisional
Probab=98.15 E-value=0.0053 Score=81.18 Aligned_cols=122 Identities=14% Similarity=0.071 Sum_probs=96.1
Q ss_pred HHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHHH
Q 000310 246 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 325 (1680)
Q Consensus 246 h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve 325 (1680)
|--+..+.+..|++..-++..|...|.+.|+.+|-+|.+++|.+-. ..-.+.+.....+-..|.+|-||...+-
T Consensus 89 YLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~------~~i~e~l~~~lkk~L~D~~pYVRKtAal 162 (746)
T PTZ00429 89 YLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV------SSVLEYTLEPLRRAVADPDPYVRKTAAM 162 (746)
T ss_pred HHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc------HHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 4444445566899999999999999999999999999999996543 2333456666667778999999999999
Q ss_pred HhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh
Q 000310 326 HVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA 373 (1680)
Q Consensus 326 ~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~ 373 (1680)
++..+...+|+.-....+++.|.+.|.|.|..|-..|+.++.++....
T Consensus 163 ai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~ 210 (746)
T PTZ00429 163 GLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYG 210 (746)
T ss_pred HHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhC
Confidence 999998888864333457778888899999999999999998875433
No 8
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.13 E-value=0.092 Score=68.72 Aligned_cols=382 Identities=15% Similarity=0.160 Sum_probs=212.3
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhcchhhhcCCCcchHHHHHHHHHHHhhhcCCCCCCChhHHHH
Q 000310 21 STKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKD 100 (1680)
Q Consensus 21 ~s~~eLlkrLk~L~~~Ls~~dQ~~~~~~~~sl~~~~~~Lv~~~LL~HkD~~Vra~vAcCLadIlRI~APdAPytd~qLkd 100 (1680)
..+.+|..+|++-.-.| +.++...+.+.|+ ++|.-++.+||-++.-||+=|.- --...+++.
T Consensus 24 MAtsDLm~eLqkdsi~L----------d~dSe~kvv~~lL--klL~D~ngEVQnlAVKClg~lvs------Kvke~~le~ 85 (1233)
T KOG1824|consen 24 MATSDLMTELQKDSIKL----------DDDSERKVVKMLL--KLLEDKNGEVQNLAVKCLGPLVS------KVKEDQLET 85 (1233)
T ss_pred hhHHHHHHHHHhhhhhc----------cccchhHHHHHHH--HHHhccCcHHHHHHHHHHHHHHh------hchHHHHHH
Confidence 45667888777753322 2334445555554 47889999999999999875541 112345555
Q ss_pred HHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHHhhcC-----CChhhHHHHHHHHH
Q 000310 101 IFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASD-----DHPESVLSSMQTIM 175 (1680)
Q Consensus 101 IF~l~i~qf~~L~d~~~p~f~q~~~LLe~LA~vks~vl~~DL~~~~Li~~lF~~ff~~v~~-----~~~~~V~~~m~~IL 175 (1680)
|-.=+..-+ +++.+.--|.-...|...++++.-++ ...+-..+|+.|...... +.-..+.-..++||
T Consensus 86 ~ve~L~~~~--~s~keq~rdissi~Lktvi~nl~P~~------~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil 157 (1233)
T KOG1824|consen 86 IVENLCSNM--LSGKEQLRDISSIGLKTVIANLPPSS------SSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDIL 157 (1233)
T ss_pred HHHHHhhhh--ccchhhhccHHHHHHHHHHhcCCCcc------ccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHH
Confidence 544443321 23333333444455555555543111 123334444444433222 22223566678888
Q ss_pred HHHhcccccc-cH---HHHHHHHHHhcCCCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCC--CCCCCCchh-HHHH
Q 000310 176 IVLLEESEDI-QE---DLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGD--SRPGHSHID-YHEV 248 (1680)
Q Consensus 176 ~~vI~Ese~v-p~---~vLd~IL~~l~~~k~~~a~~lA~~v~~~~~dkL~~~I~qyf~~il~~d--~~~~~~~~~-~h~L 248 (1680)
..++.-..++ |+ .++..++-++..++. +-++=|.-.+-.-+....+.+-.++.+.+..+ +....+..+ +-..
T Consensus 158 ~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~-aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~ 236 (1233)
T KOG1824|consen 158 ADVLSRFGTLLPNFHLSILKCLLPQLQSPRL-AVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQC 236 (1233)
T ss_pred HHHHHhhcccCcchHHHHHHHHhhcccChHH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHH
Confidence 8888876653 32 344444444433221 22222222222222222333333333322211 112222222 3344
Q ss_pred HHHHHhhcc----hhhhhhhhhhcccc---cCCChHHHHHHHHHHHHhhcCCCCChhhhc--------------------
Q 000310 249 IYDVYRCSP----QILSGVVPYLTGEL---LTDQLDTRLKAVGLVGDLFAVPGSANNEQF-------------------- 301 (1680)
Q Consensus 249 i~eL~~~~P----~lL~~ViP~Le~EL---~sed~~~Rl~At~llG~mfs~~~s~~a~~y-------------------- 301 (1680)
|-+|.+.+= .-+..++|.+.+.. ..++.++|....+.++-.+--..-++..--
T Consensus 237 l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd 316 (1233)
T KOG1824|consen 237 LAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYD 316 (1233)
T ss_pred HHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCC
Confidence 555544432 33455777777777 788999999999988865543211110000
Q ss_pred --HHHHHHHHhh------------hcCCChhHHHHHHHHhHHHHhcCCCC--CChHHHHHHHHhhhCCChhHHHHHHHHH
Q 000310 302 --HSVFSEFLKR------------LTDRIVAVRMSVLEHVKSCLLTDPSR--ADAPQILTALCDRLLDFDENVRKQVVAV 365 (1680)
Q Consensus 302 --~~~w~~fL~R------------~~D~s~~VR~~~ve~~~~iL~~~p~~--~~~~eii~~L~~rL~D~DEkVR~aaV~a 365 (1680)
-+.=..|+.- =.|.+=.||.+..++....+.++++. .--+.+-..|..|+.|-+|.|+..+..+
T Consensus 317 ~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~ 396 (1233)
T KOG1824|consen 317 TEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHA 396 (1233)
T ss_pred CccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHH
Confidence 1122222222 23556679999999999999887642 1123455788899999999999999999
Q ss_pred HHHhhhhhcCCC---------------------CH---HHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcc
Q 000310 366 ICDVACHALNSI---------------------PV---ETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSIN 421 (1680)
Q Consensus 366 i~~la~~~l~~V---------------------~~---elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~g~~~ 421 (1680)
+.++-......+ +. -+++.++.-+|+|+.+-|.-|+..|..+-+.+.....
T Consensus 397 yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~----- 471 (1233)
T KOG1824|consen 397 YIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALA----- 471 (1233)
T ss_pred HHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhh-----
Confidence 987754332211 11 2457899999999999999999999999998743221
Q ss_pred hhccccchHHHhh
Q 000310 422 QNEFEWIPGKILR 434 (1680)
Q Consensus 422 ~~~~~wIPs~IL~ 434 (1680)
...+.-+|+-+..
T Consensus 472 ~~~~slvpgI~~~ 484 (1233)
T KOG1824|consen 472 QHIPSLVPGIIYS 484 (1233)
T ss_pred hcccccchhhhhh
Confidence 2234455665543
No 9
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.98 E-value=0.0021 Score=81.75 Aligned_cols=117 Identities=16% Similarity=0.161 Sum_probs=98.9
Q ss_pred HHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHH
Q 000310 245 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVL 324 (1680)
Q Consensus 245 ~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~v 324 (1680)
.|-.+..++...|+++.-++..|...|.++|+.+|-.|.+++|.+-. ..--+.+...-.+-..|.+|.||...+
T Consensus 62 ~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~------~~~~~~l~~~v~~ll~~~~~~VRk~A~ 135 (526)
T PF01602_consen 62 GYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRT------PEMAEPLIPDVIKLLSDPSPYVRKKAA 135 (526)
T ss_dssp HHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S------HHHHHHHHHHHHHHHHSSSHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc------cchhhHHHHHHHHHhcCCchHHHHHHH
Confidence 56677788899999998999999999999999999999999999662 223355666667777899999999999
Q ss_pred HHhHHHHhcCCCCCChHH-HHHHHHhhhCCChhHHHHHHHHHHHHh
Q 000310 325 EHVKSCLLTDPSRADAPQ-ILTALCDRLLDFDENVRKQVVAVICDV 369 (1680)
Q Consensus 325 e~~~~iL~~~p~~~~~~e-ii~~L~~rL~D~DEkVR~aaV~ai~~l 369 (1680)
-++.++....|+. ... +++.|...|.|.|..|+.+|+.+++++
T Consensus 136 ~~l~~i~~~~p~~--~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 136 LALLKIYRKDPDL--VEDELIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHHHHHHCHCC--HHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCHHH--HHHHHHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 9999999888863 334 789999999999999999999999887
No 10
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.78 E-value=0.031 Score=75.91 Aligned_cols=164 Identities=20% Similarity=0.200 Sum_probs=130.8
Q ss_pred HHHHHHHHhhcchhhhhhhhhhccc---ccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHH
Q 000310 246 HEVIYDVYRCSPQILSGVVPYLTGE---LLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMS 322 (1680)
Q Consensus 246 h~Li~eL~~~~P~lL~~ViP~Le~E---L~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~ 322 (1680)
-.+|+..-..+-++..+.=|+|..- |..+.+.+|.+|.+.|..|...+. .+-.+|+.=.+--+|++|-+..||-+
T Consensus 797 a~li~~~la~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp--~vL~~~dvq~~Vh~R~~DssasVREA 874 (1692)
T KOG1020|consen 797 AKLIVFYLAHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADP--SVLSRPDVQEAVHGRLNDSSASVREA 874 (1692)
T ss_pred HHHHHHHHHhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcCh--HhhcCHHHHHHHHHhhccchhHHHHH
Confidence 3444444444445555544444433 335679999999999999998864 67889999999999999999999999
Q ss_pred HHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCC-CHHHHHHHHHhhccCChhHHHHHH
Q 000310 323 VLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI-PVETVKLVAERLRDKSVLVKRYTM 401 (1680)
Q Consensus 323 ~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V-~~elL~~LaeR~RDKK~~VR~eAm 401 (1680)
.|+.++.+++++|+ .+.+.-..+..|..|+---||..|++.++++....+... -+++...+..|+-|=--.|.+-+.
T Consensus 875 aldLvGrfvl~~~e--~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~ 952 (1692)
T KOG1020|consen 875 ALDLVGRFVLSIPE--LIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVR 952 (1692)
T ss_pred HHHHHhhhhhccHH--HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHH
Confidence 99999999999985 466888999999999999999999999999766554422 235566777999999888999999
Q ss_pred HHHHHHHHHhhh
Q 000310 402 ERLADIFRGCCL 413 (1680)
Q Consensus 402 ~~La~LY~~~~~ 413 (1680)
+.+.++|-.=+.
T Consensus 953 etf~klWF~p~~ 964 (1692)
T KOG1020|consen 953 ETFLKLWFTPVP 964 (1692)
T ss_pred HHHHHHhccCCC
Confidence 999999986443
No 11
>PRK09687 putative lyase; Provisional
Probab=97.53 E-value=0.00056 Score=80.86 Aligned_cols=145 Identities=17% Similarity=0.143 Sum_probs=102.5
Q ss_pred HHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhh-hcCCChhHHHHHH
Q 000310 246 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKR-LTDRIVAVRMSVL 324 (1680)
Q Consensus 246 h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R-~~D~s~~VR~~~v 324 (1680)
+..+..|..+-.. .|++.+..-+.+++..+|..|+..||.| +.++... +.++.....- .+|.++.||...+
T Consensus 41 ~~A~~aL~~~~~~---~~~~~l~~ll~~~d~~vR~~A~~aLg~l-g~~~~~~----~~a~~~L~~l~~~D~d~~VR~~A~ 112 (280)
T PRK09687 41 ISSIRVLQLRGGQ---DVFRLAIELCSSKNPIERDIGADILSQL-GMAKRCQ----DNVFNILNNLALEDKSACVRASAI 112 (280)
T ss_pred HHHHHHHHhcCcc---hHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCccch----HHHHHHHHHHHhcCCCHHHHHHHH
Confidence 4456666655432 2333344446788999999999999985 4332211 2333333333 4899999999999
Q ss_pred HHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHH
Q 000310 325 EHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERL 404 (1680)
Q Consensus 325 e~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~L 404 (1680)
...+++=...+. ....++..+...+.|.+..||.+|+.+++.+. +.+.+..|...+.|..+.||..|+..|
T Consensus 113 ~aLG~~~~~~~~--~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~-------~~~ai~~L~~~L~d~~~~VR~~A~~aL 183 (280)
T PRK09687 113 NATGHRCKKNPL--YSPKIVEQSQITAFDKSTNVRFAVAFALSVIN-------DEAAIPLLINLLKDPNGDVRNWAAFAL 183 (280)
T ss_pred HHHhcccccccc--cchHHHHHHHHHhhCCCHHHHHHHHHHHhccC-------CHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 999875222211 12367788888999999999999998886532 345678888999999999999999999
Q ss_pred HHH
Q 000310 405 ADI 407 (1680)
Q Consensus 405 a~L 407 (1680)
|.+
T Consensus 184 g~~ 186 (280)
T PRK09687 184 NSN 186 (280)
T ss_pred hcC
Confidence 998
No 12
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.50 E-value=0.11 Score=66.17 Aligned_cols=240 Identities=14% Similarity=0.216 Sum_probs=158.1
Q ss_pred hHHHHHHHHHhhcchhhhh-hhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHH
Q 000310 244 DYHEVIYDVYRCSPQILSG-VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMS 322 (1680)
Q Consensus 244 ~~h~Li~eL~~~~P~lL~~-ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~ 322 (1680)
++-..+..+++..|+++.. ++|.|..-|...+..++..|+.++..+ ..++..+....+.++....+...+.+|-+++.
T Consensus 133 ~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~ 211 (526)
T PF01602_consen 133 KAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIK 211 (526)
T ss_dssp HHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHH
Confidence 4667788999999999988 799999999989999999999999999 32221222344555555555558999999999
Q ss_pred HHHHhHHHHhcCCCCCCh--HHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHH
Q 000310 323 VLEHVKSCLLTDPSRADA--PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYT 400 (1680)
Q Consensus 323 ~ve~~~~iL~~~p~~~~~--~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eA 400 (1680)
.++....+....+. .. ..+++.+...|......|+.+++.++..+..... +-...+..+..-+.++.+.||-.|
T Consensus 212 il~~l~~~~~~~~~--~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~--~~~~~~~~L~~lL~s~~~nvr~~~ 287 (526)
T PF01602_consen 212 ILRLLRRYAPMEPE--DADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE--LLQKAINPLIKLLSSSDPNVRYIA 287 (526)
T ss_dssp HHHHHTTSTSSSHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH--HHHHHHHHHHHHHTSSSHHHHHHH
T ss_pred HHHHHHhcccCChh--hhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH--HHHhhHHHHHHHhhcccchhehhH
Confidence 99998765544332 22 4688999999999999999999999987655433 223456677888889999999999
Q ss_pred HHHHHHHHHHhhhhccCCCcchhccccchHHHhhhhccCCCCchhHHHHhhccCcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 000310 401 MERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEM 480 (1680)
Q Consensus 401 m~~La~LY~~~~~~~~~g~~~~~~~~wIPs~IL~~~Y~nD~~~~lVE~vL~e~LlP~~~~~~~R~~~ll~l~~~LD~~~~ 480 (1680)
+..|..+-..+. ..+. -+..++.++- ...+..-|...+--++.-.++...
T Consensus 288 L~~L~~l~~~~~----------~~v~-~~~~~~~~l~-------------------~~~d~~Ir~~~l~lL~~l~~~~n~ 337 (526)
T PF01602_consen 288 LDSLSQLAQSNP----------PAVF-NQSLILFFLL-------------------YDDDPSIRKKALDLLYKLANESNV 337 (526)
T ss_dssp HHHHHHHCCHCH----------HHHG-THHHHHHHHH-------------------CSSSHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHhhcccc----------hhhh-hhhhhhheec-------------------CCCChhHHHHHHHHHhhcccccch
Confidence 988877765531 1111 1222222211 112333455555555555566544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCch
Q 000310 481 KALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPA 534 (1680)
Q Consensus 481 kal~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kL~~~i~~Ls~~fPDp~ 534 (1680)
+. +-..+.+|+. +..+++++..+...|..++..||...
T Consensus 338 ~~----------Il~eL~~~l~------~~~d~~~~~~~i~~I~~la~~~~~~~ 375 (526)
T PF01602_consen 338 KE----------ILDELLKYLS------ELSDPDFRRELIKAIGDLAEKFPPDA 375 (526)
T ss_dssp HH----------HHHHHHHHHH------HC--HHHHHHHHHHHHHHHHHHGSSH
T ss_pred hh----------HHHHHHHHHH------hccchhhhhhHHHHHHHHHhccCchH
Confidence 32 2233444441 12345678888888888888775543
No 13
>PRK09687 putative lyase; Provisional
Probab=97.37 E-value=0.0014 Score=77.50 Aligned_cols=129 Identities=16% Similarity=0.069 Sum_probs=99.5
Q ss_pred hhhhhhccc-ccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCCh
Q 000310 262 GVVPYLTGE-LLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADA 340 (1680)
Q Consensus 262 ~ViP~Le~E-L~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~ 340 (1680)
.++|.|..- +...+..+|..|+..||.+-.. +. ..-+.+...+..-..|.++.||...+.+.+.| . .
T Consensus 90 ~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~-~~---~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----~----~ 157 (280)
T PRK09687 90 NVFNILNNLALEDKSACVRASAINATGHRCKK-NP---LYSPKIVEQSQITAFDKSTNVRFAVAFALSVI----N----D 157 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhccccc-cc---ccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc----C----C
Confidence 455666555 4567899999999999998432 21 11234556677778899999999999988642 1 1
Q ss_pred HHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000310 341 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1680)
Q Consensus 341 ~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~L 407 (1680)
.+.+..|...|.|+|..||..|+.+++.+.. -+...+..|...+.|....||..|+.+||++
T Consensus 158 ~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~-----~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 EAAIPLLINLLKDPNGDVRNWAAFALNSNKY-----DNPDIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 3688999999999999999999999987622 2446677788889999999999999999984
No 14
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.12 Score=66.59 Aligned_cols=131 Identities=15% Similarity=0.193 Sum_probs=93.7
Q ss_pred cccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHh
Q 000310 270 ELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCD 349 (1680)
Q Consensus 270 EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~ 349 (1680)
-|.+.....-+.|.+-+=-|++. |-+... +|-+-.+-..-++++|+..+-=+.-+.-..+|+..+ -=+..+++
T Consensus 43 lLdSnkd~~KleAmKRIia~iA~-G~dvS~----~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL--LSIntfQk 115 (968)
T KOG1060|consen 43 LLDSNKDSLKLEAMKRIIALIAK-GKDVSL----LFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL--LSINTFQK 115 (968)
T ss_pred HHhccccHHHHHHHHHHHHHHhc-CCcHHH----HHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee--eeHHHHHh
Confidence 35567777777887766556654 435444 444555566667888887765555554556775432 23689999
Q ss_pred hhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000310 350 RLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1680)
Q Consensus 350 rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~ 410 (1680)
-|.|+...+|.-|..++..+-.. .|-.=+|-++.+-++|-.+-||+.|...+-++|+.
T Consensus 116 ~L~DpN~LiRasALRvlSsIRvp---~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL 173 (968)
T KOG1060|consen 116 ALKDPNQLIRASALRVLSSIRVP---MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL 173 (968)
T ss_pred hhcCCcHHHHHHHHHHHHhcchh---hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC
Confidence 99999999999988887554332 22333577899999999999999999999999986
No 15
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.2 Score=65.08 Aligned_cols=353 Identities=18% Similarity=0.155 Sum_probs=204.6
Q ss_pred hhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCC
Q 000310 260 LSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRAD 339 (1680)
Q Consensus 260 L~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~ 339 (1680)
|.-+.-.|...|++.+--+==+|.-+||.|++. .+++ ++.-+--.-.+-.++-||.+.+-|+-.++..-|+.
T Consensus 105 llLltNslknDL~s~nq~vVglAL~alg~i~s~---Emar---dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l-- 176 (866)
T KOG1062|consen 105 LLLLTNSLKNDLNSSNQYVVGLALCALGNICSP---EMAR---DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL-- 176 (866)
T ss_pred HHHHHHHHHhhccCCCeeehHHHHHHhhccCCH---HHhH---HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH--
Confidence 333445778899999988889999999999975 2333 33333333333478999999999999999988863
Q ss_pred hHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCC
Q 000310 340 APQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGS 419 (1680)
Q Consensus 340 ~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~g~ 419 (1680)
.+-++.....+|.|-+..|=.++|.-+.++....++ .+ ++-|| ....|-.+-+.... +.
T Consensus 177 ~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~-----~l----~~fr~--------l~~~lV~iLk~l~~----~~ 235 (866)
T KOG1062|consen 177 VEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPD-----AL----SYFRD--------LVPSLVKILKQLTN----SG 235 (866)
T ss_pred HHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHH-----HH----HHHHH--------HHHHHHHHHHHHhc----CC
Confidence 456778899999999999999988888776655432 22 11111 22222222222211 11
Q ss_pred cch-hccccchHHHhhhhccCCCCchhHHHHhhccCcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 000310 420 INQ-NEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQ 498 (1680)
Q Consensus 420 ~~~-~~~~wIPs~IL~~~Y~nD~~~~lVE~vL~e~LlP~~~~~~~R~~~ll~l~~~LD~~~~kal~~il~~k~~l~~~~~ 498 (1680)
... -.+..||.=.|++ |.-|++.+++.-|+.+...+..+|.+..+
T Consensus 236 yspeydv~gi~dPFLQi----------------------------~iLrlLriLGq~d~daSd~M~DiLaqvat------ 281 (866)
T KOG1062|consen 236 YSPEYDVHGISDPFLQI----------------------------RILRLLRILGQNDADASDLMNDILAQVAT------ 281 (866)
T ss_pred CCCccCccCCCchHHHH----------------------------HHHHHHHHhcCCCccHHHHHHHHHHHHHh------
Confidence 111 1244444444432 56678888888888888777777764432
Q ss_pred HHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCch---HHHHHHHHHHhhccHHHHH-HHHHHhcC-CCCHHHHHHHHH
Q 000310 499 RYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPA---KAEENFLILDQLKDANVWK-ILMNLLDS-NTSFDQAFTGRD 573 (1680)
Q Consensus 499 ~~l~l~~~~~~~d~~ei~~kL~~~i~~Ls~~fPDp~---Ka~~~L~kf~klnD~Ri~k-LLk~~idp-~td~~tv~~a~k 573 (1680)
..+...-.-.+-|-.|++-|....|++. .|-..|-+|-.=.|.++.+ .|..++.. +.+...+..=+.
T Consensus 282 --------ntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~ 353 (866)
T KOG1062|consen 282 --------NTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRS 353 (866)
T ss_pred --------cccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHH
Confidence 0111111122235556666666666654 3555566665445666544 33333322 333334444455
Q ss_pred HHHHHhcCCCc-hH-HHHHHHHHhhhccccChhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccH-HHH
Q 000310 574 DLLKILGAKHR-LY-DFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE-EEL 650 (1680)
Q Consensus 574 ELlkkL~~k~~-~~-d~l~~Ll~R~S~lifNks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v-~~L 650 (1680)
-++-.|.++-+ +. .++. .++.++|.+||..+++++ |..+-.. ++-|++.. ..+
T Consensus 354 tIleCL~DpD~SIkrralE-----Ls~~lvn~~Nv~~mv~eL------------------l~fL~~~-d~~~k~~~as~I 409 (866)
T KOG1062|consen 354 TILECLKDPDVSIKRRALE-----LSYALVNESNVRVMVKEL------------------LEFLESS-DEDFKADIASKI 409 (866)
T ss_pred HHHHHhcCCcHHHHHHHHH-----HHHHHhccccHHHHHHHH------------------HHHHHhc-cHHHHHHHHHHH
Confidence 55666655421 11 1121 356678888888877643 3333333 44444443 333
Q ss_pred HHHHhhc---cccchHhHHHHHHHhhcchhhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhc
Q 000310 651 VNLLKEE---NEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAIT 714 (1680)
Q Consensus 651 i~lL~~~---~~~~~~~aLkiLak~~k~~~e~~~~~~s~l~~~L~~lal~GtpkqAKyAVr~Laa~~ 714 (1680)
+.+.+.= +-.-...++++|..+|.++++. ...-|.++.-+|.+..=+|+++-|.+..
T Consensus 410 ~~laEkfaP~k~W~idtml~Vl~~aG~~V~~d-------v~~nll~LIa~~~~e~~~y~~~rLy~a~ 469 (866)
T KOG1062|consen 410 AELAEKFAPDKRWHIDTMLKVLKTAGDFVNDD-------VVNNLLRLIANAFQELHEYAVLRLYLAL 469 (866)
T ss_pred HHHHHhcCCcchhHHHHHHHHHHhcccccchh-------hHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 3333332 2233466888888888776544 3344666777787777778888876433
No 16
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.23 E-value=1.8 Score=58.72 Aligned_cols=437 Identities=19% Similarity=0.186 Sum_probs=214.6
Q ss_pred HHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCC--CCCh---hhhcHHHHHHHHhhhcCCChhH
Q 000310 245 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP--GSAN---NEQFHSVFSEFLKRLTDRIVAV 319 (1680)
Q Consensus 245 ~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~--~s~~---a~~y~~~w~~fL~R~~D~s~~V 319 (1680)
.-..+.+|-..+|.++..=+..|-.-|..+.-..|-..++.+|.|-..- +.+. .++-++
T Consensus 295 v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~---------------- 358 (1251)
T KOG0414|consen 295 VGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRD---------------- 358 (1251)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHH----------------
Confidence 4568899999999999998888888899999999999999999988642 1111 111222
Q ss_pred HHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCH----HHHHHHHHhhccCChh
Q 000310 320 RMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV----ETVKLVAERLRDKSVL 395 (1680)
Q Consensus 320 R~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~----elL~~LaeR~RDKK~~ 395 (1680)
++++.|.+|+.|.-.-||..|.+++..+.. .+.+|. +++..++.|+-||..-
T Consensus 359 ----------------------~~le~l~erl~Dvsa~vRskVLqv~~~l~~--~~s~p~~~~~eV~~la~grl~DkSsl 414 (1251)
T KOG0414|consen 359 ----------------------ELLELLRERLLDVSAYVRSKVLQVFRRLFQ--QHSIPLGSRTEVLELAIGRLEDKSSL 414 (1251)
T ss_pred ----------------------HHHHHHHHHhhcccHHHHHHHHHHHHHHHH--ccCCCccHHHHHHHHHhcccccccHH
Confidence 244444444455555555444444433221 122222 3445555666666666
Q ss_pred HHHHHHHHHHHHHHH------------------hhhhccC--CCcchhccccchHHHhhhhccCCCCchhHHHHhhccCc
Q 000310 396 VKRYTMERLADIFRG------------------CCLRNFN--GSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLF 455 (1680)
Q Consensus 396 VR~eAm~~La~LY~~------------------~~~~~~~--g~~~~~~~~wIPs~IL~~~Y~nD~~~~lVE~vL~e~Ll 455 (1680)
||+.||..+..+-.. +....+. .+...-.=..+++--.. -|..-.. .++..=+.+--
T Consensus 415 VRk~Ai~Ll~~~L~~~Pfs~~~~~~~~~~~~E~~~~~~e~~~e~t~~l~~e~~~~~~s~-n~~~vi~--~~~~~~~~~~~ 491 (1251)
T KOG0414|consen 415 VRKNAIQLLSSLLDRHPFSSELRSDDLRAKLEKELQKLEEELESTEHLEEEEMTSNRSE-NVKGVIE--DAEKDSTTEKN 491 (1251)
T ss_pred HHHHHHHHHHHHHhcCCchhhhcchhhhhhHHHHHHhhhhhcccccccchhhccchhhh-hccccee--echhhhhhhcc
Confidence 666666666655443 2221110 00000000000000000 0000000 00000000000
Q ss_pred CCCCCHHH--HHHHHHHHHhcCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcCCCcHHHHHHHHHHHHHHHh
Q 000310 456 PTGFSVKD--RVRHWVRIFSGFDRI----EMKALEKILEQKQRLQQEMQRYLSLR-QMHQDGDAPEIQKKILFCFRVMSR 528 (1680)
Q Consensus 456 P~~~~~~~--R~~~ll~l~~~LD~~----~~kal~~il~~k~~l~~~~~~~l~l~-~~~~~~d~~ei~~kL~~~i~~Ls~ 528 (1680)
|....... ---.+..-....+.. ..+++.+++...-++...|.+-+... +..-++...+|+.-|... .+|.
T Consensus 492 q~~ss~~~~~e~~~~~~~~~s~~~~~~i~q~~~~vq~l~d~~sf~~~ms~~~~ii~~ll~s~t~teV~E~Idfl--~~c~ 569 (1251)
T KOG0414|consen 492 QLESSDNKQEEHCLLENEVESVPAENEIMQLKALVQFLEDAISFSDEMSEAIPIISQLLFSKTTTEVKEAIDFL--VRCK 569 (1251)
T ss_pred ccccccccchhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH--HHHH
Confidence 11000000 000000000111111 11233333333334444444443331 222234556676666543 3345
Q ss_pred hcCCchHHHHHHHHHHhh---ccHHHHHHHHHH-------hcCCCCHHHHHHHHHHHHHHhcC-----CCchHHHHHHHH
Q 000310 529 SFAEPAKAEENFLILDQL---KDANVWKILMNL-------LDSNTSFDQAFTGRDDLLKILGA-----KHRLYDFLSTLS 593 (1680)
Q Consensus 529 ~fPDp~Ka~~~L~kf~kl---nD~Ri~kLLk~~-------idp~td~~tv~~a~kELlkkL~~-----k~~~~d~l~~Ll 593 (1680)
.| +..-|+.++++.-.| +|..++.++-.| .+++..-.+.....+-|++.+-+ .+++-+.+..|+
T Consensus 570 ~F-~I~gae~~irkMl~LVWskd~~i~e~v~~ayk~l~~~~~~n~~~~e~~~ia~NL~~l~~~~s~~d~~slE~vl~~lv 648 (1251)
T KOG0414|consen 570 QF-GIDGAEFGIRKMLPLVWSKDKEIREAVENAYKQLYFRPDGNSKASEASSIAQNLSKLLIDASIGDLTSLEEVLCELV 648 (1251)
T ss_pred Hh-CCCcHHHHHHHHhhhhhCCCccHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence 55 445566677766553 566666555555 33444444442233344444322 233333333333
Q ss_pred HhhhccccChhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccccchHhHHHHHHHhh
Q 000310 594 MKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAG 673 (1680)
Q Consensus 594 ~R~S~lifNks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v~~Li~lL~~~~~~~~~~aLkiLak~~ 673 (1680)
. --.++...|..|.......+.+.......-++.+|-++|...|++-..+.+.|+++=.. .+.....+|..++.++
T Consensus 649 ~---~~~Id~~Vi~~Lw~~ftlq~~~~~~~q~~~sl~iL~M~s~s~~~Iv~~~~~~lv~iglg-~p~l~~~~L~~~s~i~ 724 (1251)
T KOG0414|consen 649 A---RGYIDAAVINKLWEIFTLQKKGTTNEQSRGSLIILGMASRSKPSIVLANLDLLVQIGLG-EPRLAVDVLARYSNIV 724 (1251)
T ss_pred h---CCCccHHHHHHHHHHHHHHhccCchhhhccceeehhhhhccChhhhhhhhHHHHHhccC-cHHHHHHHHHHHHHhh
Confidence 3 45678888888888764433332211223467899999999999999998887765333 3445566777776554
Q ss_pred c-chhh----h--h-hcccchHHHHHHHHhhcCCh-------HHHHHHHHHHHhhcCCCccchHHHHHHHHHHh
Q 000310 674 G-TIRE----Q--L-AATSSSVDLLLERLCLEGSR-------RQAKYAVHALAAITKDDGLKSLSVLYKRLVDM 732 (1680)
Q Consensus 674 k-~~~e----~--~-~~~~s~l~~~L~~lal~Gtp-------kqAKyAVr~Laa~~~~~~~~~~~~L~~~L~~~ 732 (1680)
- .+.+ . + .+....+...|+.+-..|-+ .-|-.|+.+|..+....+. ....|++.+.++
T Consensus 725 ~~r~~~~~~~r~~f~~~~~~~L~k~L~~l~~~~~~~~d~~~~~~~e~ais~Iy~is~~Pe~-la~~li~~~~~~ 797 (1251)
T KOG0414|consen 725 DPRKLEDAYSRPKFNLEQEEVLFKILEKLLFFEFMKADDDWFGVAEVAISAIYSISMLPEV-LATQLIRKLLKQ 797 (1251)
T ss_pred cccccchhhccccccCchHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHhcChHH-HHHHHHHHHHHH
Confidence 1 1110 0 0 12234677778877776421 5567788888888776542 223344444444
No 17
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.09 E-value=0.048 Score=74.50 Aligned_cols=262 Identities=16% Similarity=0.145 Sum_probs=142.0
Q ss_pred hhhcCCCcchHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhcccC
Q 000310 63 VLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDL 142 (1680)
Q Consensus 63 ~LL~HkD~~Vra~vAcCLadIlRI~APdAPytd~qLkdIF~l~i~qf~~L~d~~~p~f~q~~~LLe~LA~vks~vl~~DL 142 (1680)
.+|++.|.+||..++-.|.++- | ..++..++..| .|++.. -+...++.|.++ .-.+
T Consensus 628 ~~L~D~d~~VR~~Av~~L~~~~----~---------~~~~~~L~~aL---~D~d~~---VR~~Aa~aL~~l-----~~~~ 683 (897)
T PRK13800 628 PYLADPDPGVRRTAVAVLTETT----P---------PGFGPALVAAL---GDGAAA---VRRAAAEGLREL-----VEVL 683 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhhhc----c---------hhHHHHHHHHH---cCCCHH---HHHHHHHHHHHH-----Hhcc
Confidence 4568999999999999999874 1 23455555443 454332 233555555443 1122
Q ss_pred CchHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHhhh
Q 000310 143 ECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKND----TARRLAMNVIEQCAG 218 (1680)
Q Consensus 143 ~~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~vp~~vLd~IL~~l~~~k~~----~a~~lA~~v~~~~~d 218 (1680)
++...+..+++. ....|.....+.|..+-.. . ...++..+...... +++.|+. . +
T Consensus 684 ~~~~~L~~~L~~--------~d~~VR~~A~~aL~~~~~~--~-----~~~l~~~L~D~d~~VR~~Av~aL~~-----~-~ 742 (897)
T PRK13800 684 PPAPALRDHLGS--------PDPVVRAAALDVLRALRAG--D-----AALFAAALGDPDHRVRIEAVRALVS-----V-D 742 (897)
T ss_pred CchHHHHHHhcC--------CCHHHHHHHHHHHHhhccC--C-----HHHHHHHhcCCCHHHHHHHHHHHhc-----c-c
Confidence 343444444322 2346776666766664311 1 12344444322111 2233332 0 1
Q ss_pred hhHHHHHHHHHHhhcCCCCCCCCchh--HHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCC
Q 000310 219 KLEAGIKQFLVSSMSGDSRPGHSHID--YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA 296 (1680)
Q Consensus 219 kL~~~I~qyf~~il~~d~~~~~~~~~--~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~ 296 (1680)
.. +.+... +..+ +..++ +-.-|-.++.-.+.. +|.|..-|..++..+|..|+..||.+-..+
T Consensus 743 ~~-~~l~~~----l~D~----~~~VR~~aa~aL~~~~~~~~~~----~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~--- 806 (897)
T PRK13800 743 DV-ESVAGA----ATDE----NREVRIAVAKGLATLGAGGAPA----GDAVRALTGDPDPLVRAAALAALAELGCPP--- 806 (897)
T ss_pred Cc-HHHHHH----hcCC----CHHHHHHHHHHHHHhccccchh----HHHHHHHhcCCCHHHHHHHHHHHHhcCCcc---
Confidence 11 122211 1111 11111 112233333222211 344445566678888888888888773321
Q ss_pred hhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCC
Q 000310 297 NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS 376 (1680)
Q Consensus 297 ~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~ 376 (1680)
.+....+.-..|.++.||...+++...+ +. .+.+..|...|.|++..||.+|+.+++.+ .
T Consensus 807 ------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l----~~----~~a~~~L~~~L~D~~~~VR~~A~~aL~~~------~ 866 (897)
T PRK13800 807 ------DDVAAATAALRASAWQVRQGAARALAGA----AA----DVAVPALVEALTDPHLDVRKAAVLALTRW------P 866 (897)
T ss_pred ------hhHHHHHHHhcCCChHHHHHHHHHHHhc----cc----cchHHHHHHHhcCCCHHHHHHHHHHHhcc------C
Confidence 1112233445677888888888887641 11 24667778888888888888888887664 2
Q ss_pred CCHHHHHHHHHhhccCChhHHHHHHHHHH
Q 000310 377 IPVETVKLVAERLRDKSVLVKRYTMERLA 405 (1680)
Q Consensus 377 V~~elL~~LaeR~RDKK~~VR~eAm~~La 405 (1680)
.+......|...+.|....||++|...|.
T Consensus 867 ~~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 867 GDPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 34555667777888888888888888775
No 18
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=97.03 E-value=0.0012 Score=58.97 Aligned_cols=44 Identities=20% Similarity=0.392 Sum_probs=40.0
Q ss_pred cccceEEEecCCCCceEEEEEEEecCCCCeeEEEccC-Ccceeeecc
Q 000310 1379 LIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDD-EDVEVLRLD 1424 (1680)
Q Consensus 1379 lvG~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdD-gd~E~l~L~ 1424 (1680)
-+|..|.+.| .|..||.|+|+.+++. +...|.|.| |..+++...
T Consensus 4 ~~G~~~~a~~-~d~~wyra~I~~~~~~-~~~~V~f~D~G~~~~v~~~ 48 (57)
T smart00333 4 KVGDKVAARW-EDGEWYRARIIKVDGE-QLYEVFFIDYGNEEVVPPS 48 (57)
T ss_pred CCCCEEEEEe-CCCCEEEEEEEEECCC-CEEEEEEECCCccEEEeHH
Confidence 4899999999 9999999999999988 889999988 999988753
No 19
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=2 Score=54.47 Aligned_cols=430 Identities=15% Similarity=0.167 Sum_probs=232.2
Q ss_pred HHHHHHHHHh-hhhhHHHHHHHHHHhhcCCCCC-CCCch-----hHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHH
Q 000310 207 RLAMNVIEQC-AGKLEAGIKQFLVSSMSGDSRP-GHSHI-----DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTR 279 (1680)
Q Consensus 207 ~lA~~v~~~~-~dkL~~~I~qyf~~il~~d~~~-~~~~~-----~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~R 279 (1680)
++.+++++.+ .+++...|.+...+.++..... .+.++ -++-|=.+--.+.-.++.+|++.+ ...|..+|
T Consensus 26 k~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf----~D~d~~vR 101 (675)
T KOG0212|consen 26 KLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCF----SDQDSQVR 101 (675)
T ss_pred HHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhc----cCccceee
Confidence 3444444433 4677777777777766533211 11111 122222222223344455555554 44788999
Q ss_pred HHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHH---HHHhHHHHhcCCCCCChHHHHHHHHhhhCCChh
Q 000310 280 LKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSV---LEHVKSCLLTDPSRADAPQILTALCDRLLDFDE 356 (1680)
Q Consensus 280 l~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~---ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DE 356 (1680)
--|.+.+-.+-..-..++..-|+.+|....+=+.|.+..||-.. -...++|.......-...+++.-|.+|+.+.+.
T Consensus 102 yyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~ 181 (675)
T KOG0212|consen 102 YYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINP 181 (675)
T ss_pred eHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCc
Confidence 99999887776544457788889999999999999999999652 234445554433223356899999999999999
Q ss_pred HHHHHHHHHHHHhhhh-hcCCC--CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccC-C-----Cc------c
Q 000310 357 NVRKQVVAVICDVACH-ALNSI--PVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFN-G-----SI------N 421 (1680)
Q Consensus 357 kVR~aaV~ai~~la~~-~l~~V--~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~-g-----~~------~ 421 (1680)
.+|..+|.-+.-+... .++-+ -.+++.-|..=+-|-...||..|=..|+.+-+....+.+. + .. .
T Consensus 182 ~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~s 261 (675)
T KOG0212|consen 182 MTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQS 261 (675)
T ss_pred hHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccC
Confidence 9999999888665431 11111 1244555566678999999999999999988876543221 0 00 0
Q ss_pred ------hhccccchHHHhhhhccCCCCch-hHHHHhhccCcCCCCCHHHH----HHHHHH--HHhcCCHHHHH---HHHH
Q 000310 422 ------QNEFEWIPGKILRCLYDKDFGSD-TIESVLCGSLFPTGFSVKDR----VRHWVR--IFSGFDRIEMK---ALEK 485 (1680)
Q Consensus 422 ------~~~~~wIPs~IL~~~Y~nD~~~~-lVE~vL~e~LlP~~~~~~~R----~~~ll~--l~~~LD~~~~k---al~~ 485 (1680)
...+-||-.- .++.....- ..-. +++.++|.-.+.+.. ....+. +.+-++....+ .+..
T Consensus 262 s~~~iq~~al~Wi~ef----V~i~g~~~l~~~s~-il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ 336 (675)
T KOG0212|consen 262 SEPEIQLKALTWIQEF----VKIPGRDLLLYLSG-ILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGS 336 (675)
T ss_pred CcHHHHHHHHHHHHHH----hcCCCcchhhhhhh-hhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHH
Confidence 0113344111 112111111 1222 245678875443332 222222 11111221111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHH---hhcCCchHHHHH--HHHH-HhhccH------HHHH
Q 000310 486 ILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMS---RSFAEPAKAEEN--FLIL-DQLKDA------NVWK 553 (1680)
Q Consensus 486 il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kL~~~i~~Ls---~~fPDp~Ka~~~--L~kf-~klnD~------Ri~k 553 (1680)
+-..+++|+.- +. +.+++. +.+||. ..+|...-...+ +..+ ..|-|+ +..-
T Consensus 337 -------ii~vl~~~l~~-------~~--~~tri~-~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~ 399 (675)
T KOG0212|consen 337 -------IIEVLTKYLSD-------DR--EETRIA-VLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALS 399 (675)
T ss_pred -------HHHHHHHHhhc-------ch--HHHHHH-HHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHH
Confidence 22233333331 11 222333 345553 444544332111 1111 223222 1222
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhccccChhHHHHHHHHHHhhcccchhhhHHHHHHHHH
Q 000310 554 ILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILG 633 (1680)
Q Consensus 554 LLk~~idp~td~~tv~~a~kELlkkL~~k~~~~d~l~~Ll~R~S~lifNks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~ 633 (1680)
++..++....++ ..++....|+.+..+...+.+.--.|..|.-++..|.++|=.-+..+-.. ..|-.+++..-+.|+
T Consensus 400 lla~i~~s~~~~-~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~ILe~--e~nl~FAstMV~~Ln 476 (675)
T KOG0212|consen 400 LLASICSSSNSP-NLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADILER--EENLKFASTMVQALN 476 (675)
T ss_pred HHHHHhcCcccc-cHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHHhc--cccchHHHHHHHHHH
Confidence 333333333222 22344455555544444455556668889999999999997766654332 334456777789999
Q ss_pred HHHhhCCcCccccHHHHHHHHhh-ccccchHhHHHHHHH
Q 000310 634 ILARFSPLLLGGTEEELVNLLKE-ENEIIKEGILHVLAK 671 (1680)
Q Consensus 634 ~IS~~~P~lFk~~v~~Li~lL~~-~~~~~~~~aLkiLak 671 (1680)
.|--+.|++| +|-+.|++ .++.. ......|++
T Consensus 477 ~iLlTStELf-----~LR~~Lk~lsn~es-~~lF~cLy~ 509 (675)
T KOG0212|consen 477 TILLTSTELF-----QLRNKLKDLSNEES-QNLFCCLYR 509 (675)
T ss_pred hhhcccHHHH-----HHHHHHHhccChhh-hHHHHHHHH
Confidence 9999999999 67777775 22221 234555554
No 20
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.87 E-value=0.034 Score=61.51 Aligned_cols=94 Identities=15% Similarity=0.161 Sum_probs=84.5
Q ss_pred ChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChh
Q 000310 316 IVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVL 395 (1680)
Q Consensus 316 s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~ 395 (1680)
+|.||.-++-..+++...+|. .....++.+..+|.|+++.||..|+.++..+....+-.+...++..+...+.|..+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~ 78 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPE 78 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHH
Confidence 478999999999999998885 345788899999999999999999999999998888888888878888899999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 000310 396 VKRYTMERLADIFRGC 411 (1680)
Q Consensus 396 VR~eAm~~La~LY~~~ 411 (1680)
||..|...+..+....
T Consensus 79 Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 79 IRSLARSFFSELLKKR 94 (178)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998874
No 21
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=96.78 E-value=0.0027 Score=54.83 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=38.6
Q ss_pred cceEEEecCCCCceEEEEEEEecCCCCeeEEEccC-Ccceeeecc
Q 000310 1381 GYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDD-EDVEVLRLD 1424 (1680)
Q Consensus 1381 G~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdD-gd~E~l~L~ 1424 (1680)
|..|-+.|+.|..||.|+|...++ .+.-.|.|.| |..|.+.+.
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~-~~~~~V~f~DyG~~~~v~~~ 44 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILS-DGKVEVFFVDYGNTEVVPLS 44 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECC-CCcEEEEEEcCCCcEEEeHH
Confidence 678999999999999999999998 7888999987 999988754
No 22
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.75 E-value=3.3 Score=53.75 Aligned_cols=161 Identities=22% Similarity=0.286 Sum_probs=107.9
Q ss_pred hhhhhHHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCC
Q 000310 216 CAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGS 295 (1680)
Q Consensus 216 ~~dkL~~~I~qyf~~il~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s 295 (1680)
.++++-..+..|++++-.-+. ..+ ++.+.+-+|=--+.+.+-.+|-...+++..+....+.
T Consensus 58 i~dRIl~fla~fv~sl~q~d~-----e~D--------------lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e 118 (892)
T KOG2025|consen 58 IPDRILSFLARFVESLPQLDK-----EED--------------LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAE 118 (892)
T ss_pred cHHHHHHHHHHHHHhhhccCc-----hhh--------------HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccc
Confidence 356666778888877532210 011 2222222333334578899999999999998874321
Q ss_pred ChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhh-CCChhHHHHHHHHHHHHhhhhhc
Q 000310 296 ANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRL-LDFDENVRKQVVAVICDVACHAL 374 (1680)
Q Consensus 296 ~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL-~D~DEkVR~aaV~ai~~la~~~l 374 (1680)
-=-..|.-+-...+.|..|+.|.||++.|.+... +.-.|. ++.-.+...|..-+ +||.+.||.+|.-.|
T Consensus 119 idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsr-lQ~d~~-dee~~v~n~l~~liqnDpS~EVRRaaLsnI-------- 188 (892)
T KOG2025|consen 119 IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSR-LQGDPK-DEECPVVNLLKDLIQNDPSDEVRRAALSNI-------- 188 (892)
T ss_pred cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHH-HhcCCC-CCcccHHHHHHHHHhcCCcHHHHHHHHHhh--------
Confidence 1122344455588999999999999999999876 332332 33345666665543 899999999976666
Q ss_pred CCCCHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 000310 375 NSIPVETVKLVAERLRDKSVLVKRYTMERLAD 406 (1680)
Q Consensus 375 ~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~ 406 (1680)
.++..++-.+.+|.||=+..+|+-+-.++..
T Consensus 189 -~vdnsTlp~IveRarDV~~anRrlvY~r~lp 219 (892)
T KOG2025|consen 189 -SVDNSTLPCIVERARDVSGANRRLVYERCLP 219 (892)
T ss_pred -ccCcccchhHHHHhhhhhHHHHHHHHHHhhh
Confidence 4566777788999999999999976554443
No 23
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=96.74 E-value=0.0026 Score=58.02 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=33.6
Q ss_pred cccceEEEecCCCCceEEEEEEEecCCCCeeEEEccC
Q 000310 1379 LIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDD 1415 (1680)
Q Consensus 1379 lvG~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdD 1415 (1680)
-+|..|.+||+.+..||.|+|+.+++ .+++.|.|++
T Consensus 4 ~~G~~Ve~~~~~~~~W~~a~V~~~~~-~~~~~V~~~~ 39 (61)
T smart00743 4 KKGDRVEVFSKEEDSWWEAVVTKVLG-DGKYLVRYLT 39 (61)
T ss_pred CCCCEEEEEECCCCEEEEEEEEEECC-CCEEEEEECC
Confidence 48999999999999999999999998 6789999987
No 24
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.68 E-value=1.9 Score=57.36 Aligned_cols=543 Identities=17% Similarity=0.168 Sum_probs=270.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhhcC--C-CCCCCCchhH-HHHHHHHHhhcchhhhhhhhhhcccccCC----C
Q 000310 204 TARRLAMNVIEQCAGKLEAGIKQFLVSSMSG--D-SRPGHSHIDY-HEVIYDVYRCSPQILSGVVPYLTGELLTD----Q 275 (1680)
Q Consensus 204 ~a~~lA~~v~~~~~dkL~~~I~qyf~~il~~--d-~~~~~~~~~~-h~Li~eL~~~~P~lL~~ViP~Le~EL~se----d 275 (1680)
.++.+-..+++...+-+..++-.....+++. | +.+++..+.+ --+..-|-.+.|....+-+|-|..-+.+- =
T Consensus 454 ~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~f 533 (1233)
T KOG1824|consen 454 GCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPF 533 (1233)
T ss_pred hHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCch
Confidence 5677778888877777777765555555442 2 1112222222 23344455667777766666554433211 1
Q ss_pred hHHHHHHHHHHHHhhcC-----C--CCChhhhcHHHHHHHHhhh--cCCChhHHHHHHHHhHHHHhcCCC--CCChHHHH
Q 000310 276 LDTRLKAVGLVGDLFAV-----P--GSANNEQFHSVFSEFLKRL--TDRIVAVRMSVLEHVKSCLLTDPS--RADAPQIL 344 (1680)
Q Consensus 276 ~~~Rl~At~llG~mfs~-----~--~s~~a~~y~~~w~~fL~R~--~D~s~~VR~~~ve~~~~iL~~~p~--~~~~~eii 344 (1680)
-.+--.|..+.+++... + +.++......+|.+-+.|+ +|.+-+||...+.+.++++.+-.+ +.+.+-++
T Consensus 534 yKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L 613 (1233)
T KOG1824|consen 534 YKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTL 613 (1233)
T ss_pred HhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 22222333333333321 1 3455566678888888876 699999999999999998886533 24445678
Q ss_pred HHHHhhhCCChhHHHHHHHHHHHHhhhhhcC----CCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCc
Q 000310 345 TALCDRLLDFDENVRKQVVAVICDVACHALN----SIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSI 420 (1680)
Q Consensus 345 ~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~----~V~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~g~~ 420 (1680)
..|++||. .|--|+.||+|+|.++...++ .+-.+++..++.=+|--....|.+++..+-+|-..|...+. ..
T Consensus 614 ~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~--~~ 689 (1233)
T KOG1824|consen 614 PILLERLG--NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIP--AE 689 (1233)
T ss_pred HHHHHHHh--chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--HH
Confidence 88999985 578899999999999875543 33446777888777766667888877777777776632111 11
Q ss_pred c-hhccccchHHHhhhhccCCCCchhHHHHhhccCc--CCCCCHHHHH---HHHHHHHh--cCCHHHHHHHHHHHHHHHH
Q 000310 421 N-QNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLF--PTGFSVKDRV---RHWVRIFS--GFDRIEMKALEKILEQKQR 492 (1680)
Q Consensus 421 ~-~~~~~wIPs~IL~~~Y~nD~~~~lVE~vL~e~Ll--P~~~~~~~R~---~~ll~l~~--~LD~~~~kal~~il~~k~~ 492 (1680)
. ..-+..||+-|- ..|.+.-..--.+..+++ |...-.+-+- ..++.+.. .+-..+..++..++..-..
T Consensus 690 ~~e~vL~el~~Lis----esdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~ 765 (1233)
T KOG1824|consen 690 LLEAVLVELPPLIS----ESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVI 765 (1233)
T ss_pred HHHHHHHHhhhhhh----HHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHh
Confidence 1 112344444332 223221111111112221 1110011111 11111111 1112222222222111111
Q ss_pred HHHHHHHHHHHHhhhc--------CCCcHHHHHHHHHHHHHHHhhcCCchHH--HHHHHHHH--hhccH-HHHHHHHHH-
Q 000310 493 LQQEMQRYLSLRQMHQ--------DGDAPEIQKKILFCFRVMSRSFAEPAKA--EENFLILD--QLKDA-NVWKILMNL- 558 (1680)
Q Consensus 493 l~~~~~~~l~l~~~~~--------~~d~~ei~~kL~~~i~~Ls~~fPDp~Ka--~~~L~kf~--klnD~-Ri~kLLk~~- 558 (1680)
-+..-..|..+....+ ++-....--.+.+|+..|+..+|+-.++ ..-.+-|. +.+|. ++|-+|..=
T Consensus 766 t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGE 845 (1233)
T KOG1824|consen 766 TKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGE 845 (1233)
T ss_pred cCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhh
Confidence 0111011222211111 1112223334788899999999965554 33344444 34443 455544221
Q ss_pred hcCC--CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhccccC--hhHHHHHHHHHHhhcccchhhhHHHHHHHHHH
Q 000310 559 LDSN--TSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFN--KEHVKEILLEVAAQKSSANAQFMQSCMDILGI 634 (1680)
Q Consensus 559 idp~--td~~tv~~a~kELlkkL~~k~~~~d~l~~Ll~R~S~lifN--ks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~ 634 (1680)
++.. .++..- ...-++.-++.+ ..|....-.|-...+..+ ...+|.|+..+... .. .++ ---|-|...
T Consensus 846 lgr~~~~s~~~e--~~~~iieaf~sp--~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sq--pk-~Qy-LLLhSlkev 917 (1233)
T KOG1824|consen 846 LGRRKDLSPQNE--LKDTIIEAFNSP--SEDVKSAASYALGSLAVGNLPKYLPFILEQIESQ--PK-RQY-LLLHSLKEV 917 (1233)
T ss_pred hccCCCCCcchh--hHHHHHHHcCCC--hHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcc--hH-hHH-HHHHHHHHH
Confidence 1111 111110 011222223322 234444434433334331 23567777765432 11 111 113567778
Q ss_pred HHhhCCcCccccHHHHHHHHhhccccchHhHHHHHHHhhcchhhhhhcccchHHHHHHHHhhcCChHH---HHHHHHHHH
Q 000310 635 LARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQ---AKYAVHALA 711 (1680)
Q Consensus 635 IS~~~P~lFk~~v~~Li~lL~~~~~~~~~~aLkiLak~~k~~~e~~~~~~s~l~~~L~~lal~Gtpkq---AKyAVr~La 711 (1680)
|+...+..|+..++.+-.+|...-+..-+++=-+++.|-|.+- -...+++.+.|+.+-..|.|.. +=-||+..
T Consensus 918 i~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~---l~epesLlpkL~~~~~S~a~~~rs~vvsavKfs- 993 (1233)
T KOG1824|consen 918 IVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLV---LIEPESLLPKLKLLLRSEASNTRSSVVSAVKFS- 993 (1233)
T ss_pred HHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHH---hCChHHHHHHHHHHhcCCCcchhhhhhheeeee-
Confidence 9999999999999999999987544444555555666644422 1224578999988877776532 22222221
Q ss_pred hhcCCCccchHHHHHH-HHHHh---hhhcC-CC-chHHHHHHHHHhhcccccccchHHHHHHHH
Q 000310 712 AITKDDGLKSLSVLYK-RLVDM---LEEKT-HL-PAVLQSLGCIAQTAMPVFETRESEIEEFIK 769 (1680)
Q Consensus 712 a~~~~~~~~~~~~L~~-~L~~~---L~~~~-~l-~t~L~sL~~Iaq~aP~vfe~~~~eI~~fii 769 (1680)
++.... .+..+++ .|-+- +...+ +. -..|+++-..+.+-|....+--.++...++
T Consensus 994 -isd~p~--~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly 1054 (1233)
T KOG1824|consen 994 -ISDQPQ--PIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLY 1054 (1233)
T ss_pred -ecCCCC--ccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHH
Confidence 222221 1112222 22222 22111 11 224677777777777666554445544443
No 25
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.27 Score=62.88 Aligned_cols=100 Identities=26% Similarity=0.193 Sum_probs=80.6
Q ss_pred hhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcH-HHHHHHHhhhc-----CCChhHHHHHHHHhHHHHhcCCCCCC
Q 000310 266 YLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFH-SVFSEFLKRLT-----DRIVAVRMSVLEHVKSCLLTDPSRAD 339 (1680)
Q Consensus 266 ~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~-~~w~~fL~R~~-----D~s~~VR~~~ve~~~~iL~~~p~~~~ 339 (1680)
+|+.-|..+-+.+|.-||..|.+.|+. |+.--| .+....|++.. |.+++||++.++..+.++.+-.++..
T Consensus 224 ~l~~LL~d~~p~VRS~a~~gv~k~~s~----fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~ 299 (1005)
T KOG1949|consen 224 ELYSLLEDPYPMVRSTAILGVCKITSK----FWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPL 299 (1005)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHH----HHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhH
Confidence 445556778899999999999999985 665543 45667888765 57889999999999998876545555
Q ss_pred hHHHHHHHHhhhCCChhHHHHHHHHHHHHh
Q 000310 340 APQILTALCDRLLDFDENVRKQVVAVICDV 369 (1680)
Q Consensus 340 ~~eii~~L~~rL~D~DEkVR~aaV~ai~~l 369 (1680)
-..++++|.--|+|.-|+||.|+|..+..+
T Consensus 300 le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 300 LEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 678899999999999999999999887544
No 26
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.60 E-value=3.3 Score=54.26 Aligned_cols=160 Identities=14% Similarity=0.049 Sum_probs=115.4
Q ss_pred HHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHH
Q 000310 245 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVL 324 (1680)
Q Consensus 245 ~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~v 324 (1680)
.|--+.+-.+-.|++-+--|-.+.--|...|.-+|--|.+++..|= +..--|=...+--+-..|.+|-||-...
T Consensus 91 VyvYLlrYAEeqpdLALLSIntfQk~L~DpN~LiRasALRvlSsIR------vp~IaPI~llAIk~~~~D~s~yVRk~AA 164 (968)
T KOG1060|consen 91 VYVYLLRYAEEQPDLALLSINTFQKALKDPNQLIRASALRVLSSIR------VPMIAPIMLLAIKKAVTDPSPYVRKTAA 164 (968)
T ss_pred HHHHHHHHhhcCCCceeeeHHHHHhhhcCCcHHHHHHHHHHHHhcc------hhhHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 3544555567789998888889999999999999999999987542 3333455666777889999999999999
Q ss_pred HHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHH
Q 000310 325 EHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERL 404 (1680)
Q Consensus 325 e~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~L 404 (1680)
-+++.+..-.|+. -.+|++.+...|.|.+..|=-+||.++-++....++.|-.. .+.+..-+.|=.-==....|..|
T Consensus 165 ~AIpKLYsLd~e~--k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHkn-yrklC~ll~dvdeWgQvvlI~mL 241 (968)
T KOG1060|consen 165 HAIPKLYSLDPEQ--KDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKN-YRKLCRLLPDVDEWGQVVLINML 241 (968)
T ss_pred HhhHHHhcCChhh--HHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHH-HHHHHhhccchhhhhHHHHHHHH
Confidence 9999988776653 34899999999999999999999999988877777765443 12222223222211123456666
Q ss_pred HHHHHHhhh
Q 000310 405 ADIFRGCCL 413 (1680)
Q Consensus 405 a~LY~~~~~ 413 (1680)
.+.-+.+..
T Consensus 242 ~RYAR~~l~ 250 (968)
T KOG1060|consen 242 TRYARHQLP 250 (968)
T ss_pred HHHHHhcCC
Confidence 665554443
No 27
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.57 E-value=0.013 Score=56.21 Aligned_cols=83 Identities=23% Similarity=0.304 Sum_probs=66.4
Q ss_pred HHhhh-cCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHH
Q 000310 308 FLKRL-TDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVA 386 (1680)
Q Consensus 308 fL~R~-~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~La 386 (1680)
++... +|.++.||...+...+.+ ...++++.|...+.|+|..||.+|+.+++.+. +.+.+..|.
T Consensus 4 L~~~l~~~~~~~vr~~a~~~L~~~--------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-------~~~~~~~L~ 68 (88)
T PF13646_consen 4 LLQLLQNDPDPQVRAEAARALGEL--------GDPEAIPALIELLKDEDPMVRRAAARALGRIG-------DPEAIPALI 68 (88)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHCC--------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-------HHHTHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHc--------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------CHHHHHHHH
Confidence 44555 799999999998888731 13588999999999999999999999998764 345677778
Q ss_pred Hhhcc-CChhHHHHHHHHHH
Q 000310 387 ERLRD-KSVLVKRYTMERLA 405 (1680)
Q Consensus 387 eR~RD-KK~~VR~eAm~~La 405 (1680)
+.+.| ....||..|+..||
T Consensus 69 ~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 69 KLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTC-SSHHHHHHHHHHHH
T ss_pred HHHcCCCcHHHHHHHHhhcC
Confidence 87776 55678999999986
No 28
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.46 E-value=0.015 Score=79.41 Aligned_cols=120 Identities=23% Similarity=0.201 Sum_probs=89.7
Q ss_pred hhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHH
Q 000310 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQ 342 (1680)
Q Consensus 263 ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~e 342 (1680)
.++.|-..|..+++.+|..|++.||+.-. +.+...+...+.|.++.||...+..+..+....+.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~------ 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP------ 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc------
Confidence 55666677788999999999999998631 23455556667899999999999998776433221
Q ss_pred HHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000310 343 ILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1680)
Q Consensus 343 ii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~L 407 (1680)
...|...|.|+|+.||.+|+.+++.+.... . ..+...+.|+.+.||..|+..|+.+
T Consensus 686 -~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~-----~---~~l~~~L~D~d~~VR~~Av~aL~~~ 741 (897)
T PRK13800 686 -APALRDHLGSPDPVVRAAALDVLRALRAGD-----A---ALFAAALGDPDHRVRIEAVRALVSV 741 (897)
T ss_pred -hHHHHHHhcCCCHHHHHHHHHHHHhhccCC-----H---HHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 235666778899999999999887754211 1 2346688999999999999999874
No 29
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.25 E-value=0.48 Score=60.50 Aligned_cols=368 Identities=17% Similarity=0.189 Sum_probs=202.3
Q ss_pred HHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCC-hhhhcHHHHHHHHhhhcCCChhHHHH-
Q 000310 245 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA-NNEQFHSVFSEFLKRLTDRIVAVRMS- 322 (1680)
Q Consensus 245 ~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~-~a~~y~~~w~~fL~R~~D~s~~VR~~- 322 (1680)
+.+++-.+|+- ++|.-++|.|.+-|.+++=-+|-.++=.||-|--+ .-+ |..--|.+.--++.-..|+.|-||..
T Consensus 378 aLDVLanvf~~--elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEG-cM~g~~p~LpeLip~l~~~L~DKkplVRsIT 454 (885)
T KOG2023|consen 378 ALDVLANVFGD--ELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEG-CMQGFVPHLPELIPFLLSLLDDKKPLVRSIT 454 (885)
T ss_pred HHHHHHHhhHH--HHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHH-HhhhcccchHHHHHHHHHHhccCccceeeee
Confidence 45666666653 67777899999999999999999999999977654 223 44445788888889999999999975
Q ss_pred -H--HHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh-cCCCCH--HHHHHH---HHhhccCC
Q 000310 323 -V--LEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-LNSIPV--ETVKLV---AERLRDKS 393 (1680)
Q Consensus 323 -~--ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~-l~~V~~--elL~~L---aeR~RDKK 393 (1680)
| -.+++.++.-+++ .--.-++.+|..|++|..-+|.-|||.++..+...+ -+.||. .+|.++ ...-.-|+
T Consensus 455 CWTLsRys~wv~~~~~~-~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KN 533 (885)
T KOG2023|consen 455 CWTLSRYSKWVVQDSRD-EYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKN 533 (885)
T ss_pred eeeHhhhhhhHhcCChH-hhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcc
Confidence 3 3555555554432 223467889999999999999999999998887644 445553 122222 23334455
Q ss_pred hhHHHHHHHHHHHHHHHhhhhccCCCcchhccccchHHHhh--hhccCCCCc-------hhHHHHhhccCcCCCCCHHHH
Q 000310 394 VLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILR--CLYDKDFGS-------DTIESVLCGSLFPTGFSVKDR 464 (1680)
Q Consensus 394 ~~VR~eAm~~La~LY~~~~~~~~~g~~~~~~~~wIPs~IL~--~~Y~nD~~~-------~lVE~vL~e~LlP~~~~~~~R 464 (1680)
..|==.||-+||.--..+..+.. -.+. -||--|=. ..-+.|.+. ..|-..|-..++|+--++=+|
T Consensus 534 LlILYDAIgtlAdsvg~~Ln~~~----Yiqi--LmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~R 607 (885)
T KOG2023|consen 534 LLILYDAIGTLADSVGHALNKPA----YIQI--LMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQR 607 (885)
T ss_pred eehHHHHHHHHHHHHHHhcCcHH----HHHH--hccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHH
Confidence 66666777777776654432210 0000 11221111 111223221 145666777788888777777
Q ss_pred HHHHHHHH----h--cCCHH--------HHHHHHHHHHHHHHHHHHHHHHH------HH-HhhhcCCCcHHHHHHHHHHH
Q 000310 465 VRHWVRIF----S--GFDRI--------EMKALEKILEQKQRLQQEMQRYL------SL-RQMHQDGDAPEIQKKILFCF 523 (1680)
Q Consensus 465 ~~~ll~l~----~--~LD~~--------~~kal~~il~~k~~l~~~~~~~l------~l-~~~~~~~d~~ei~~kL~~~i 523 (1680)
.-++++=+ . .-|+. -+-+|.-+-+.-+.+-..+..++ ++ .+..+ ...|++.+---..+
T Consensus 608 c~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~-D~~peVRQS~FALL 686 (885)
T KOG2023|consen 608 CFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQ-DEVPEVRQSAFALL 686 (885)
T ss_pred HHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhc-cCChHHHHHHHHHH
Confidence 66665411 0 00110 00111112222222222222221 11 11122 24566654322222
Q ss_pred HHHHhhcCCchHHHHHHHHHHhhccHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhcccc
Q 000310 524 RVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSN--TSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLF 601 (1680)
Q Consensus 524 ~~Ls~~fPDp~Ka~~~L~kf~klnD~Ri~kLLk~~idp~--td~~tv~~a~kELlkkL~~k~~~~d~l~~Ll~R~S~lif 601 (1680)
--|++++++..+. +=..++.+|..-.+++ +-+..+.-|.-|+--|+|.+. +.+++.++++.-. ++
T Consensus 687 GDltk~c~~~v~p----------~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~--~~~v~~vl~~L~~-ii 753 (885)
T KOG2023|consen 687 GDLTKACFEHVIP----------NLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKM--KQYVSPVLEDLIT-II 753 (885)
T ss_pred HHHHHHHHHhccc----------hHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhh--hhHHHHHHHHHHH-Hh
Confidence 2333443333322 1122344444444453 334556667788888887663 2566666665543 23
Q ss_pred ChhHHH-HHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccHHHHH
Q 000310 602 NKEHVK-EILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELV 651 (1680)
Q Consensus 602 Nks~V~-~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v~~Li 651 (1680)
|+.+.+ +|++.. | --+-.+..++|+++..|.+..+
T Consensus 754 n~~~~~~tllENt--------------A-ITIGrLg~~~Pe~vAp~l~~f~ 789 (885)
T KOG2023|consen 754 NRQNTPKTLLENT--------------A-ITIGRLGYICPEEVAPHLDSFM 789 (885)
T ss_pred cccCchHHHHHhh--------------h-hhhhhhhccCHHhcchhHHHHH
Confidence 433333 333311 1 1122367789999999876554
No 30
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.25 E-value=0.46 Score=61.12 Aligned_cols=241 Identities=19% Similarity=0.288 Sum_probs=153.6
Q ss_pred hhHHHHHHHHHHHHhccccc-----ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhhhhHHHHHHH--------HHHh
Q 000310 165 ESVLSSMQTIMIVLLEESED-----IQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQF--------LVSS 231 (1680)
Q Consensus 165 ~~V~~~m~~IL~~vI~Ese~-----vp~~vLd~IL~~l~~~k~~~a~~lA~~v~~~~~dkL~~~I~qy--------f~~i 231 (1680)
+.|....+..+..++...+. +..+++..|+..+..... .....|.+++...+.. ...+... +.++
T Consensus 91 ~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~-~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l 168 (503)
T PF10508_consen 91 PKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDL-SVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSL 168 (503)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcH-HHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHH
Confidence 46777767767777776655 556777777777754432 3334444444433321 1222222 3333
Q ss_pred hcCCCCCCCCchhHHHHHHHHHhhcchhhhh-----hhhhhcccccCCChHHHHHHHHHHHHhhcCC-CCChhhhcHHHH
Q 000310 232 MSGDSRPGHSHIDYHEVIYDVYRCSPQILSG-----VVPYLTGELLTDQLDTRLKAVGLVGDLFAVP-GSANNEQFHSVF 305 (1680)
Q Consensus 232 l~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~-----ViP~Le~EL~sed~~~Rl~At~llG~mfs~~-~s~~a~~y~~~w 305 (1680)
+... ......++++++.+|.+..|+.+.. +++.+..+|..+|+-+|+.|+++|++|-..+ |..+..+ ..++
T Consensus 169 ~~~~--~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~-~gi~ 245 (503)
T PF10508_consen 169 MSQS--SDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQ-QGIF 245 (503)
T ss_pred Hhcc--CHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHh-CCHH
Confidence 3221 1123457999999999999988765 5689999999999999999999999998855 3333332 2344
Q ss_pred HHHHhhhcCC-----ChhHHHH-HHHHhHHHHhcCCCC--CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh----
Q 000310 306 SEFLKRLTDR-----IVAVRMS-VLEHVKSCLLTDPSR--ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA---- 373 (1680)
Q Consensus 306 ~~fL~R~~D~-----s~~VR~~-~ve~~~~iL~~~p~~--~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~---- 373 (1680)
........+. ...+.+- .+++.+.+....|.. ...+.++..|...+...|...|..|+.+++.++.+.
T Consensus 246 ~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~ 325 (503)
T PF10508_consen 246 DKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQ 325 (503)
T ss_pred HHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHH
Confidence 4444443333 2222221 235555544434421 122456666676777899999999999999987522
Q ss_pred -c-CCCCH---HHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000310 374 -L-NSIPV---ETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1680)
Q Consensus 374 -l-~~V~~---elL~~LaeR~RDKK~~VR~eAm~~La~LY~~ 410 (1680)
+ ..-+. .+++.++.+++.-+..+|..|+..|+.++..
T Consensus 326 ~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~ 367 (503)
T PF10508_consen 326 LLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTS 367 (503)
T ss_pred HHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Confidence 3 11122 3688999999999999999999999999964
No 31
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.20 E-value=2.5 Score=54.43 Aligned_cols=142 Identities=19% Similarity=0.181 Sum_probs=93.4
Q ss_pred hhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCC-ChhHHHHHHHHhHHHHhcCCCCCCh-
Q 000310 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDR-IVAVRMSVLEHVKSCLLTDPSRADA- 340 (1680)
Q Consensus 263 ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~-s~~VR~~~ve~~~~iL~~~p~~~~~- 340 (1680)
++|.|-.-|..+|..+-..|.++|.+|.+.+. .+..-+++....-|...... +..||+-+.+.+..|...++.....
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~-~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~ 198 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHPE-GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAV 198 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCch-hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 45566666788999999999999999998653 33333333334445555555 7789999999998887665542111
Q ss_pred --HHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh--cCCC-CHHHHHHHHHhhccCChhHHHHHHHHHH
Q 000310 341 --PQILTALCDRLLDFDENVRKQVVAVICDVACHA--LNSI-PVETVKLVAERLRDKSVLVKRYTMERLA 405 (1680)
Q Consensus 341 --~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~--l~~V-~~elL~~LaeR~RDKK~~VR~eAm~~La 405 (1680)
+.+++.+...|.+.|--||+.++..+.++|... ...+ ...++..+...+.+-+..-|-.+|-..|
T Consensus 199 ~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g 268 (503)
T PF10508_consen 199 VNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPG 268 (503)
T ss_pred HhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhh
Confidence 137788888899999999999999999998722 2222 2234555555555544333333333333
No 32
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=96.17 E-value=4.4 Score=59.20 Aligned_cols=371 Identities=16% Similarity=0.121 Sum_probs=179.4
Q ss_pred CChhHHHHHHHHhHHHHhcCCCCC---ChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcC----CCCHHHHHHHHH
Q 000310 315 RIVAVRMSVLEHVKSCLLTDPSRA---DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN----SIPVETVKLVAE 387 (1680)
Q Consensus 315 ~s~~VR~~~ve~~~~iL~~~p~~~---~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~----~V~~elL~~Lae 387 (1680)
.+.+++..++.+...+...+.+.- .....++.|...|...++.+|..++.+++-++..+-. .+....+-.|..
T Consensus 416 ~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~ 495 (2102)
T PLN03200 416 ATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQ 495 (2102)
T ss_pred CCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH
Confidence 447899999888877554332210 0012457888889889999999999999888753321 223345667788
Q ss_pred hhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhccccchHHHhhhhccCCCCchhHHHHhhccCcCCCCCHHHHHHH
Q 000310 388 RLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRH 467 (1680)
Q Consensus 388 R~RDKK~~VR~eAm~~La~LY~~~~~~~~~g~~~~~~~~wIPs~IL~~~Y~nD~~~~lVE~vL~e~LlP~~~~~~~R~~~ 467 (1680)
.++..+..+|++|+..|+++=... .+.......-+-||. |++++-..+.+. .+ .=+..
T Consensus 496 LL~s~~~~iqeeAawAL~NLa~~~----~qir~iV~~aGAIpp-LV~LL~sgd~~~--q~---------------~Aa~A 553 (2102)
T PLN03200 496 LLETGSQKAKEDSATVLWNLCCHS----EDIRACVESAGAVPA-LLWLLKNGGPKG--QE---------------IAAKT 553 (2102)
T ss_pred HHcCCCHHHHHHHHHHHHHHhCCc----HHHHHHHHHCCCHHH-HHHHHhCCCHHH--HH---------------HHHHH
Confidence 888889999999999998874310 000011122355664 555543222210 00 01112
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhc
Q 000310 468 WVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLK 547 (1680)
Q Consensus 468 ll~l~~~LD~~~~kal~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kL~~~i~~Ls~~fPDp~Ka~~~L~kf~kln 547 (1680)
+..+..+-|.... ..++++. . ++.+.++.....++..|...-....-.... .-
T Consensus 554 L~nLi~~~d~~~I-----------------~~Lv~LL---l-sdd~~~~~~aL~vLgnIlsl~~~~d~~~~g------~~ 606 (2102)
T PLN03200 554 LTKLVRTADAATI-----------------SQLTALL---L-GDLPESKVHVLDVLGHVLSVASLEDLVREG------SA 606 (2102)
T ss_pred HHHHHhccchhHH-----------------HHHHHHh---c-CCChhHHHHHHHHHHHHHhhcchhHHHHHh------hh
Confidence 2222222222211 1122221 0 122223222211222221111000000000 00
Q ss_pred cHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhc-CCCchHHHHHHHHHhhhccccChhHHHHHHHHHHhhcccchhhh
Q 000310 548 DANVWKILMNLLDSNT--SFDQAFTGRDDLLKILG-AKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQF 624 (1680)
Q Consensus 548 D~Ri~kLLk~~idp~t--d~~tv~~a~kELlkkL~-~k~~~~d~l~~Ll~R~S~lifNks~V~~LL~~v~~~~~~~~~~~ 624 (1680)
+......|-.++...+ .++.+. .++-.+- ... +.. ..++....|+-|+..+... +....
T Consensus 607 ~~ggL~~Lv~LL~sgs~~ikk~Aa----~iLsnL~a~~~---d~~--------~avv~agaIpPLV~LLss~---~~~v~ 668 (2102)
T PLN03200 607 ANDALRTLIQLLSSSKEETQEKAA----SVLADIFSSRQ---DLC--------ESLATDEIINPCIKLLTNN---TEAVA 668 (2102)
T ss_pred ccccHHHHHHHHcCCCHHHHHHHH----HHHHHHhcCCh---HHH--------HHHHHcCCHHHHHHHHhcC---ChHHH
Confidence 0011111112221111 111111 1111111 111 100 1133445577777766432 11112
Q ss_pred HHHHHHHHHHHHhhCCc-----CccccHHHHHHHHhhccccchHhHHHHHHHhhcchhhhhhcccchHHHHHHHHhhcCC
Q 000310 625 MQSCMDILGILARFSPL-----LLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGS 699 (1680)
Q Consensus 625 ~~~a~eLL~~IS~~~P~-----lFk~~v~~Li~lL~~~~~~~~~~aLkiLak~~k~~~e~~~~~~s~l~~~L~~lal~Gt 699 (1680)
.+.|..|....+...+. +=.+.+..|+++|...+..+++.++.+|+.+...-............+.|.++-.+|+
T Consensus 669 keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~ 748 (2102)
T PLN03200 669 TQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGT 748 (2102)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCC
Confidence 23444444444322222 1145689999999998877889999999887643211111123456889999999999
Q ss_pred hHHHHHHHHHHHhhcCCCccch-H------HHHHHHHHHhhhhcC--CCch--HHHHHHHHHhh
Q 000310 700 RRQAKYAVHALAAITKDDGLKS-L------SVLYKRLVDMLEEKT--HLPA--VLQSLGCIAQT 752 (1680)
Q Consensus 700 pkqAKyAVr~Laa~~~~~~~~~-~------~~L~~~L~~~L~~~~--~l~t--~L~sL~~Iaq~ 752 (1680)
++.=++|+.+|..++....... + .-.+..|++.|...+ +..+ .|..|+-+++.
T Consensus 749 ~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~ 812 (2102)
T PLN03200 749 LEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLART 812 (2102)
T ss_pred hHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhh
Confidence 9999999999987775432110 1 112345555554222 3332 56666666664
No 33
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.98 E-value=11 Score=51.62 Aligned_cols=312 Identities=13% Similarity=0.123 Sum_probs=175.1
Q ss_pred hhhhcCCCcchHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhccc
Q 000310 62 PVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLD 141 (1680)
Q Consensus 62 ~~LL~HkD~~Vra~vAcCLadIlRI~APdAPytd~qLkdIF~l~i~qf~~L~d~~~p~f~q~~~LLe~LA~vks~vl~~D 141 (1680)
..+++-.-.-||--.|--+++|-|---|+ +--++.+|++.+.. +++.+.-.-.++||.++.++..-. +
T Consensus 86 ~~~~~E~~~~vr~k~~dviAeia~~~l~e------~WPell~~L~q~~~---S~~~~~rE~al~il~s~~~~~~~~---~ 153 (1075)
T KOG2171|consen 86 EIIQSETEPSVRHKLADVIAEIARNDLPE------KWPELLQFLFQSTK---SPNPSLRESALLILSSLPETFGNT---L 153 (1075)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHhcccc------chHHHHHHHHHHhc---CCCcchhHHHHHHHHhhhhhhccc---c
Confidence 34555566778999999999999987777 56678888888754 344444455688888888753221 1
Q ss_pred CCchHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccc--c-ccHHHHHH---HHHH---hcCCCcHHHHHHHHHH
Q 000310 142 LECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESE--D-IQEDLLVI---LLSA---LGRNKNDTARRLAMNV 212 (1680)
Q Consensus 142 L~~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese--~-vp~~vLd~---IL~~---l~~~k~~~a~~lA~~v 212 (1680)
-+--+-+..||...+.- ++.+ |...-..-++.++...+ . .-...-+. ++.. +.......+...+-+.
T Consensus 154 ~~~~~~l~~lf~q~~~d--~s~~--vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~ 229 (1075)
T KOG2171|consen 154 QPHLDDLLRLFSQTMTD--PSSP--VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEA 229 (1075)
T ss_pred chhHHHHHHHHHHhccC--Ccch--HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHH
Confidence 12234667777776652 2333 66666677777766654 1 11111111 1111 1122222233333333
Q ss_pred HHHhhhhhHHHHHHHHHHhhc------CCCCCCCCch--hHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHH
Q 000310 213 IEQCAGKLEAGIKQFLVSSMS------GDSRPGHSHI--DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVG 284 (1680)
Q Consensus 213 ~~~~~dkL~~~I~qyf~~il~------~d~~~~~~~~--~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~ 284 (1680)
+..-+...-+.+..+|.+++. ++ ...+... .+-++|.-+-+++|.++----| +-+ .+...
T Consensus 230 l~El~e~~pk~l~~~l~~ii~~~l~Ia~n-~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~-~~~----------~lv~~ 297 (1075)
T KOG2171|consen 230 LIELLESEPKLLRPHLSQIIQFSLEIAKN-KELENSIRHLALEFLVSLSEYAPAMCKKLAL-LGH----------TLVPV 297 (1075)
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHhhc-ccccHHHHHHHHHHHHHHHHhhHHHhhhchh-hhc----------cHHHH
Confidence 333333333444444444331 21 1111222 3667888888887776543222 111 11122
Q ss_pred HHHHhhcCCCCChhhhcHHHHHHHHh-hhcCCCh-hHHHHHHHHhHHHHhcCCC-CCChHHHHHHHHhhhCCChhHHHHH
Q 000310 285 LVGDLFAVPGSANNEQFHSVFSEFLK-RLTDRIV-AVRMSVLEHVKSCLLTDPS-RADAPQILTALCDRLLDFDENVRKQ 361 (1680)
Q Consensus 285 llG~mfs~~~s~~a~~y~~~w~~fL~-R~~D~s~-~VR~~~ve~~~~iL~~~p~-~~~~~eii~~L~~rL~D~DEkVR~a 361 (1680)
++..|--..+ + .+|++ --.|.+. +.=.-+.+.+-+.|..+.. .-....+.+++...|.-++++=|.|
T Consensus 298 ~l~~mte~~~-D---------~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~A 367 (1075)
T KOG2171|consen 298 LLAMMTEEED-D---------DEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHA 367 (1075)
T ss_pred HHHhcCCccc-c---------hhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHH
Confidence 2222221111 1 55555 1112111 1122233444455555533 2345678899999999999999999
Q ss_pred HHHHHHHhhhhhcCCC---CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 000310 362 VVAVICDVACHALNSI---PVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1680)
Q Consensus 362 aV~ai~~la~~~l~~V---~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~ 411 (1680)
++.+|+.++.-..+.+ =.+++..+..-+.|-++.||-.|++.+|++=-..
T Consensus 368 aL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl 420 (1075)
T KOG2171|consen 368 ALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDL 420 (1075)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhh
Confidence 9999998875333322 2346778889999999999999999999886554
No 34
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.91 E-value=0.078 Score=60.39 Aligned_cols=146 Identities=18% Similarity=0.154 Sum_probs=104.4
Q ss_pred hhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHH
Q 000310 264 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQI 343 (1680)
Q Consensus 264 iP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~ei 343 (1680)
++.|...+.+..-.+-..|..+++.|+..-+..|......+....|++..|....||.....+...|+.+-+.. ..+
T Consensus 55 ~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~---~~~ 131 (228)
T PF12348_consen 55 LDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYS---PKI 131 (228)
T ss_dssp -HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH---HHH
Confidence 34555556666777888999999999987666666667788889999999999999999999998888764411 245
Q ss_pred -HHHHHhhhCCChhHHHHHHHHHHHHhhhhhc---CCCC-----HHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhh
Q 000310 344 -LTALCDRLLDFDENVRKQVVAVICDVACHAL---NSIP-----VETVKLVAERLRDKSVLVKRYTMERLADIFRGCC 412 (1680)
Q Consensus 344 -i~~L~~rL~D~DEkVR~aaV~ai~~la~~~l---~~V~-----~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~ 412 (1680)
...+..-+.+-...||..++..+..+..... ..+. ..+...+..-+.|.++.||..|-..+..+|+.+-
T Consensus 132 ~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 132 LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 7888888999999999999998877654333 2221 3467899999999999999999999999999763
No 35
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.83 E-value=1.9 Score=55.34 Aligned_cols=231 Identities=16% Similarity=0.183 Sum_probs=146.8
Q ss_pred HHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCH--
Q 000310 302 HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV-- 379 (1680)
Q Consensus 302 ~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~-- 379 (1680)
.+++-.-|..|.|+...||-+...+++.|+..-+.. -...++..+..-+.+.-++=-.++|+.++-++......++.
T Consensus 215 v~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~-aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~l 293 (569)
T KOG1242|consen 215 VPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAY-AVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCL 293 (569)
T ss_pred HhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcc-hhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHH
Confidence 566667777889999999999999988776653322 23567777777777777777788899988887766554433
Q ss_pred -HHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhccccchHHHhhhhccCCCC-chhHHHHhhccCcCC
Q 000310 380 -ETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFG-SDTIESVLCGSLFPT 457 (1680)
Q Consensus 380 -elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~g~~~~~~~~wIPs~IL~~~Y~nD~~-~~lVE~vL~e~LlP~ 457 (1680)
+++..+.+.|-|-|+.||+.++.+|-++=... ++ ..+.-|=.++++|+-++.-+ ...++.+...
T Consensus 294 p~iiP~lsevl~DT~~evr~a~~~~l~~~~svi-----dN----~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~t----- 359 (569)
T KOG1242|consen 294 PDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI-----DN----PDIQKIIPTLLDALADPSCYTPECLDSLGAT----- 359 (569)
T ss_pred hHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh-----cc----HHHHHHHHHHHHHhcCcccchHHHHHhhcce-----
Confidence 56788999999999999999999998876652 11 12334455677776444311 2344444333
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCchHHH
Q 000310 458 GFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAE 537 (1680)
Q Consensus 458 ~~~~~~R~~~ll~l~~~LD~~~~kal~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kL~~~i~~Ls~~fPDp~Ka~ 537 (1680)
++....|+.+..-+--|+.+.-. - -+..++++...+|..+++..+||....
T Consensus 360 ------------tFV~~V~~psLalmvpiL~R~l~----------e-------Rst~~kr~t~~IidNm~~LveDp~~la 410 (569)
T KOG1242|consen 360 ------------TFVAEVDAPSLALMVPILKRGLA----------E-------RSTSIKRKTAIIIDNMCKLVEDPKDLA 410 (569)
T ss_pred ------------eeeeeecchhHHHHHHHHHHHHh----------h-------ccchhhhhHHHHHHHHHHhhcCHHHHh
Confidence 23345566544433334332211 1 122355666677888888888988876
Q ss_pred HHHHHHHhhccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 000310 538 ENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAK 582 (1680)
Q Consensus 538 ~~L~kf~klnD~Ri~kLLk~~idp~td~~tv~~a~kELlkkL~~k 582 (1680)
.-|..+- +.+...+.+. .|++.+ .+.++.-.+++++|..
T Consensus 411 pfl~~Ll----p~lk~~~~d~-~PEvR~-vaarAL~~l~e~~g~~ 449 (569)
T KOG1242|consen 411 PFLPSLL----PGLKENLDDA-VPEVRA-VAARALGALLERLGEV 449 (569)
T ss_pred hhHHHHh----hHHHHHhcCC-ChhHHH-HHHHHHHHHHHHHHhh
Confidence 6666554 3344444444 566554 2344666677777654
No 36
>KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only]
Probab=95.80 E-value=0.0083 Score=69.15 Aligned_cols=66 Identities=24% Similarity=0.374 Sum_probs=52.8
Q ss_pred CCCCCCcccccceEEEecCCCCceEEEEEEEe-cCCCCeeEEEccCCc----ceeeec---ccccEEEecCCCC
Q 000310 1371 NAGVNIEDLIGYRIKVWWPMDKQFYEGTIKSY-DPIKKKHVILYDDED----VEVLRL---DKERWELLDNGRK 1436 (1680)
Q Consensus 1371 ~~~~~~~~lvG~rv~V~Wp~D~~~Y~G~V~~y-~~~~~~H~v~YdDgd----~E~l~L---~~e~~~~~~~~~~ 1436 (1680)
-+...++.+||++|..-||+++.||.+.|+.| .....+|.+.||-.+ ++|+++ ..|+++|...+..
T Consensus 152 ~~n~pp~slvgr~v~~k~pdk~~~te~iit~~~~~~E~~~~l~~~~~~~~~p~~wvdl~~I~p~DIrw~g~~~~ 225 (273)
T KOG4675|consen 152 WGNVPPESLVGRKVWIKWPDKRKFTEAIITQYDAEKEGHHLLVPDINDCNDPWEWVDLREISPEDIRWEGGDPG 225 (273)
T ss_pred cccCCchhhccccccccCcccccccccccccchhhhhhhhhcccccccccCCccccccccCCHHhccccCCCCC
Confidence 44566777999999999999999999999995 555667888888665 677777 4788888776433
No 37
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.76 E-value=0.8 Score=54.10 Aligned_cols=231 Identities=12% Similarity=0.204 Sum_probs=151.8
Q ss_pred hhhcCCCcchHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhcccC
Q 000310 63 VLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDL 142 (1680)
Q Consensus 63 ~LL~HkD~~Vra~vAcCLadIlRI~APdAPytd~qLkdIF~l~i~qf~~L~d~~~p~f~q~~~LLe~LA~vks~vl~~DL 142 (1680)
..|.+.|..+|+-.--||+++|-=..|+ ..+..|..-++.||.+-| .|. ..+...+.-....+-|..+
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~-~L~~~ev~~L~~F~~~rl---~D~--------~~~~~~l~gl~~L~~~~~~ 73 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPD-FLSRQEVQVLLDFFCSRL---DDH--------ACVQPALKGLLALVKMKNF 73 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHh-hccHHHHHHHHHHHHHHh---ccH--------hhHHHHHHHHHHHHhCcCC
Confidence 4678899999999999999999765444 478899999999999865 442 2233333333334334444
Q ss_pred CchHHHHHHHHHHHHhhc-CCChhhHHHHHHHHHHHHhccc----ccccHHHHHHHHHHhcCCCcH----HHHHHHHHHH
Q 000310 143 ECDELVNEMYSTFFAVAS-DDHPESVLSSMQTIMIVLLEES----EDIQEDLLVILLSALGRNKND----TARRLAMNVI 213 (1680)
Q Consensus 143 ~~~~Li~~lF~~ff~~v~-~~~~~~V~~~m~~IL~~vI~Es----e~vp~~vLd~IL~~l~~~k~~----~a~~lA~~v~ 213 (1680)
+ .+....+.+.+|+-+. ..++...+...-.||..+++.. ..+..+.+.-++..+..+|-. -++.|...|+
T Consensus 74 ~-~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~ 152 (262)
T PF14500_consen 74 S-PESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVIL 152 (262)
T ss_pred C-hhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 3 2335555555555443 3456666666666666666553 446778888777777544432 7888888887
Q ss_pred HHhhhhhHHHHHHHHHHhhc------CCCCCCCCchhHHHHHHHHHhh---cchhhhhhhhhhcccccCCChHHHHHHHH
Q 000310 214 EQCAGKLEAGIKQFLVSSMS------GDSRPGHSHIDYHEVIYDVYRC---SPQILSGVVPYLTGELLTDQLDTRLKAVG 284 (1680)
Q Consensus 214 ~~~~dkL~~~I~qyf~~il~------~d~~~~~~~~~~h~Li~eL~~~---~P~lL~~ViP~Le~EL~sed~~~Rl~At~ 284 (1680)
..-. +.+.+..+|--+.. ..+.....++..-+|-..|..| .|..-.-++|.|-+.|.++...++..+.+
T Consensus 153 ~~~~--~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~ 230 (262)
T PF14500_consen 153 QEFD--ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQ 230 (262)
T ss_pred Hhcc--cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 7765 46777777743221 1111011244445555555544 67777789999999999999999999999
Q ss_pred HHHHhhcCCCCC-hhhhcHHHHHHH
Q 000310 285 LVGDLFAVPGSA-NNEQFHSVFSEF 308 (1680)
Q Consensus 285 llG~mfs~~~s~-~a~~y~~~w~~f 308 (1680)
+|..++..-|.. +..-...+|.+.
T Consensus 231 tL~~c~~~y~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 231 TLKACIENYGADSLSPHWSTIWNAL 255 (262)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 999999876643 344457778754
No 38
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.66 E-value=2.2 Score=55.07 Aligned_cols=188 Identities=19% Similarity=0.158 Sum_probs=126.7
Q ss_pred hhhcccccCCChHHHHHHHHHHHHhhcCCCCChh-----hhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhc----CC
Q 000310 265 PYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANN-----EQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT----DP 335 (1680)
Q Consensus 265 P~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a-----~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~----~p 335 (1680)
|-|.--|++.|-.+|+.|..++-+.|--.+.+.. +--..-|....+=..|--|.||-..++.+-.+... -|
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP 256 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP 256 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 6777889999999999999999999987665542 12233355556677899999999999887775532 25
Q ss_pred CCCChHHHHHHHHh-hhCCChhHHHHHHHHHHHHhhhhhcCCCCHH-HHHHHHHhhccCChhHHHHHHHHHHHHHHHhhh
Q 000310 336 SRADAPQILTALCD-RLLDFDENVRKQVVAVICDVACHALNSIPVE-TVKLVAERLRDKSVLVKRYTMERLADIFRGCCL 413 (1680)
Q Consensus 336 ~~~~~~eii~~L~~-rL~D~DEkVR~aaV~ai~~la~~~l~~V~~e-lL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~ 413 (1680)
.. ...++++.+.+ --.|+--.||.+|++.+-.++.....+-=.+ +|..|..-+-|+.-+||..+...|.+|=++-.-
T Consensus 257 ~~-i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra~ 335 (1005)
T KOG1949|consen 257 PT-ILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRAA 335 (1005)
T ss_pred HH-HHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhhhh
Confidence 42 23455544444 4588999999999999988776554433223 467888889999999999999999998776321
Q ss_pred hccCCCcchhccccchHHHhhhhccCCCC--chhHHHHhhccCcCCCCCHH
Q 000310 414 RNFNGSINQNEFEWIPGKILRCLYDKDFG--SDTIESVLCGSLFPTGFSVK 462 (1680)
Q Consensus 414 ~~~~g~~~~~~~~wIPs~IL~~~Y~nD~~--~~lVE~vL~e~LlP~~~~~~ 462 (1680)
.-+.-||--.+-.--..|-+ ..-+-+.++...||..-+.+
T Consensus 336 ---------~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~k~ee 377 (1005)
T KOG1949|consen 336 ---------KFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFLPVNKPEE 377 (1005)
T ss_pred ---------hhhccccHHHHHHHHhccccHHHHHHHHHHHHhhcCCCCcHH
Confidence 22333444333222233433 12344555667778765443
No 39
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.50 E-value=10 Score=48.56 Aligned_cols=255 Identities=17% Similarity=0.188 Sum_probs=142.8
Q ss_pred cccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHh
Q 000310 270 ELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCD 349 (1680)
Q Consensus 270 EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~ 349 (1680)
-+.+.+-.+|....++|+.+.-.-+.-=-.-|..+-...++|.-|+.+.||.+.|.+...+= .-+.++...+...|..
T Consensus 99 g~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Q--e~~~neen~~~n~l~~ 176 (885)
T COG5218 99 GTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQ--EMELNEENRIVNLLKD 176 (885)
T ss_pred cccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH--hccCChHHHHHHHHHH
Confidence 35578999999999999987654331001234455667889999999999999999876532 2233444555555544
Q ss_pred h-hCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhccccc
Q 000310 350 R-LLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWI 428 (1680)
Q Consensus 350 r-L~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~g~~~~~~~~wI 428 (1680)
- -+||-+.||.+|.--| .|+..++-.+.||.||=....|+- +|....+++.+ -++..|
T Consensus 177 ~vqnDPS~EVRr~allni---------~vdnsT~p~IlERarDv~~anRr~-------vY~r~Lp~iGd-----~~~lsi 235 (885)
T COG5218 177 IVQNDPSDEVRRLALLNI---------SVDNSTYPCILERARDVSGANRRM-------VYERCLPRIGD-----LKSLSI 235 (885)
T ss_pred HHhcCcHHHHHHHHHHHe---------eeCCCcchhHHHHhhhhhHHHHHH-------HHHHHhhhhcc-----hhhccc
Confidence 3 3899999999965554 455666777899999998888874 45554444321 234445
Q ss_pred hHHHhhhhc-cCC--CC--chhHHHHhhccCcCCCCCHHHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHH--HHHHH
Q 000310 429 PGKILRCLY-DKD--FG--SDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRI----EMKALEKILEQKQR--LQQEM 497 (1680)
Q Consensus 429 Ps~IL~~~Y-~nD--~~--~~lVE~vL~e~LlP~~~~~~~R~~~ll~l~~~LD~~----~~kal~~il~~k~~--l~~~~ 497 (1680)
--+|+-.=+ -+| +. ...+|-+....+.|.+.. ++.+...+|-. .++|+..+|..+.- .+..+
T Consensus 236 ~kri~l~ewgl~dRe~sv~~a~~d~ia~~w~~~~d~~-------lveLle~lDvSr~sv~v~aik~~F~~R~D~ls~~eF 308 (885)
T COG5218 236 DKRILLMEWGLLDREFSVKGALVDAIASAWRIPEDLR-------LVELLEFLDVSRRSVLVAAIKGVFEKRPDVLSEKEF 308 (885)
T ss_pred cceehhhhhcchhhhhhHHHHHHHHHHHHhccccccc-------HHHHHHHHhhhhHHHHHHHHHHHHhhccccchhhhc
Confidence 445542211 222 22 237788878888877643 33333334332 22233333221110 01111
Q ss_pred HHHHHHHhhhcCCCcHHH-HHH----HHHHHHHHHhhcCCchHHHHHHHHHHhhccHHHHHHHHH
Q 000310 498 QRYLSLRQMHQDGDAPEI-QKK----ILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMN 557 (1680)
Q Consensus 498 ~~~l~l~~~~~~~d~~ei-~~k----L~~~i~~Ls~~fPDp~Ka~~~L~kf~klnD~Ri~kLLk~ 557 (1680)
-.|+ +..... +..-. .+- |...|.-|-.-||+..+....+..+-.+.++..|.-+-+
T Consensus 309 Pe~~--w~d~T~-E~tfL~rt~~lyCldnNitell~~fPe~~~L~~~~~hyvslry~sSYnt~cf 370 (885)
T COG5218 309 PEYL--WSDPTE-ENTFLSRTELLYCLDNNITELLGRFPESLALPDLESHYVSLRYRSSYNTLCF 370 (885)
T ss_pred HHHH--hhCchH-HHHHHHHHHHHHHHhccHHHHHhhchhhhcchHHHhhheeeeeccccchhHH
Confidence 1111 000000 00000 001 122244444559999998888888887877764444333
No 40
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.31 E-value=0.057 Score=51.83 Aligned_cols=86 Identities=23% Similarity=0.232 Sum_probs=65.7
Q ss_pred hhhhcccc-cCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHH
Q 000310 264 VPYLTGEL-LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQ 342 (1680)
Q Consensus 264 iP~Le~EL-~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~e 342 (1680)
||.|-..| ...+..+|..|+.+||++- .+.+...++..+.|.++.||.+.+.+.+.+ - ..+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i-~-------~~~ 62 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRI-G-------DPE 62 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC-H-------HHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh-C-------CHH
Confidence 45666667 7889999999999999431 235566666666999999999999999864 1 247
Q ss_pred HHHHHHhhhCCC-hhHHHHHHHHHHH
Q 000310 343 ILTALCDRLLDF-DENVRKQVVAVIC 367 (1680)
Q Consensus 343 ii~~L~~rL~D~-DEkVR~aaV~ai~ 367 (1680)
.+..|.+.+.|. +..||.+++.+++
T Consensus 63 ~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 63 AIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp THHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 888999988775 5567999888763
No 41
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.26 E-value=20 Score=49.52 Aligned_cols=167 Identities=17% Similarity=0.174 Sum_probs=100.3
Q ss_pred hhHHHHHHHHHhhhhhhhcccCC-chHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHhcC
Q 000310 121 GRRVVILETLAKYRSCVVMLDLE-CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGR 199 (1680)
Q Consensus 121 ~q~~~LLe~LA~vks~vl~~DL~-~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~vp~~vLd~IL~~l~~ 199 (1680)
..-++.+.-+.+-..++-..|.+ |=.=+..+|..||.+- ....+.+.....+++..|+.++-.+-+.+-..++..+..
T Consensus 282 ~~t~~W~~v~~~~~~~la~~q~~~~~~~~~~~~~~~~t~~-~s~~~e~~q~a~q~l~~il~~sv~~~~~~c~~~~~~~l~ 360 (1176)
T KOG1248|consen 282 LLTVAWLKVLNEAHDILATLQEEKALQALPRLFSLFFTIL-ESLIEELVQAASQSLKEILKESVTVIDALCSKQLHSLLD 360 (1176)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHhhhhhhhHHHHHH-hcccHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHc
Confidence 45677777788877777767766 5555667788888843 344567788889999999999888666666665555544
Q ss_pred CCcHHHHH----HHHHHHHHhhhhhHHHHHHHHHHhhc-CCCCCCCCchhHH-HHHHHHHhhcchhhhhhhhhhcccccC
Q 000310 200 NKNDTARR----LAMNVIEQCAGKLEAGIKQFLVSSMS-GDSRPGHSHIDYH-EVIYDVYRCSPQILSGVVPYLTGELLT 273 (1680)
Q Consensus 200 ~k~~~a~~----lA~~v~~~~~dkL~~~I~qyf~~il~-~d~~~~~~~~~~h-~Li~eL~~~~P~lL~~ViP~Le~EL~s 273 (1680)
-+..++|. +-..+|++|...-.|++..-+-.+-. ..+........++ -+.-.+-..=|+.+++++|.= |..
T Consensus 361 ~kf~~~~~~ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLn---l~~ 437 (1176)
T KOG1248|consen 361 YKFHAVWRFILQILSALFEKCGELSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTILPLN---LHA 437 (1176)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcchh---ccc
Confidence 44445554 44555666665444444444333211 1111122222443 455666777999999999972 232
Q ss_pred C-ChHHHHHHHHHHHHhhc
Q 000310 274 D-QLDTRLKAVGLVGDLFA 291 (1680)
Q Consensus 274 e-d~~~Rl~At~llG~mfs 291 (1680)
+ ..-.|.=-.-+|-+-+-
T Consensus 438 ~s~~~~RsWLLPvLR~~i~ 456 (1176)
T KOG1248|consen 438 ESLSFTRSWLLPVLRDYII 456 (1176)
T ss_pred cccccchhHhHHHHHHhhc
Confidence 2 23344444444444443
No 42
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.79 E-value=0.41 Score=64.68 Aligned_cols=125 Identities=15% Similarity=0.126 Sum_probs=89.9
Q ss_pred HHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHH-HHH
Q 000310 307 EFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETV-KLV 385 (1680)
Q Consensus 307 ~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL-~~L 385 (1680)
.|+-|+.|+.|.||+.|++..+-.+.+-|+.-...-.++++.=.|.|-...||+.+|+++..+-...-..-..+++ .-.
T Consensus 291 VFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRF 370 (1048)
T KOG2011|consen 291 VFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRF 370 (1048)
T ss_pred eeeeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 6888999999999999999999888888864333467899999999999999999999998877653222222222 222
Q ss_pred HHh-----hccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhccccchHHHhhhhccCCCC
Q 000310 386 AER-----LRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFG 442 (1680)
Q Consensus 386 aeR-----~RDKK~~VR~eAm~~La~LY~~~~~~~~~g~~~~~~~~wIPs~IL~~~Y~nD~~ 442 (1680)
.+| .||-.+.||..++..+..++...... ... -..|.+|+|+.+.+
T Consensus 371 K~RIVeMadrd~~~~Vrav~L~~~~~~~~~g~L~-------d~d----i~~Vy~Li~d~~r~ 421 (1048)
T KOG2011|consen 371 KDRIVEMADRDRNVSVRAVGLVLCLLLSSSGLLS-------DKD----ILIVYSLIYDSNRR 421 (1048)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHhcccccC-------hhH----HHHHHHHHhccCcc
Confidence 222 58889999999998887776643211 111 23457778877655
No 43
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.69 E-value=5.8 Score=52.26 Aligned_cols=372 Identities=13% Similarity=0.101 Sum_probs=194.6
Q ss_pred hhhhhhcccccCCChHHHHHHHH-HHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCCh
Q 000310 262 GVVPYLTGELLTDQLDTRLKAVG-LVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADA 340 (1680)
Q Consensus 262 ~ViP~Le~EL~sed~~~Rl~At~-llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~ 340 (1680)
+.+|.+-.+|.+.-...|..|++ +++.|--+ -++.. +|...++-..=.+.+.---+=.++...-..+|.. +
T Consensus 13 ~ei~elks~l~s~~~~kr~~a~kkvIa~Mt~G--~DvSs----lF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~--a 84 (734)
T KOG1061|consen 13 GEIPELKSQLNSQSKEKRKDAVKKVIAYMTVG--KDVSS----LFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL--A 84 (734)
T ss_pred hhchHHHHHhhhhhhhhHHHHHHHHHhcCccC--cchHh----hhHHHHhhcccCCchHHHHHHHHHHHhhccCchH--H
Confidence 34555555665555566666664 56666554 24555 4444444444445666666666666555667753 3
Q ss_pred HHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCc
Q 000310 341 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSI 420 (1680)
Q Consensus 341 ~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~g~~ 420 (1680)
...+..+.+-.-|+++.+|.-|+...| +-....+.+-+..-+..-++|+.+-||+.|..+++++|.....-+.
T Consensus 85 ~~avnt~~kD~~d~np~iR~lAlrtm~---~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~---- 157 (734)
T KOG1061|consen 85 ILAVNTFLKDCEDPNPLIRALALRTMG---CLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVE---- 157 (734)
T ss_pred HhhhhhhhccCCCCCHHHHHHHhhcee---eEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhcc----
Confidence 456788888899999999998655543 3333344445666778888999999999999999999986432211
Q ss_pred chhccccchHHHhhhhccCCCCc-----hhHHHHhhcc--CcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 000310 421 NQNEFEWIPGKILRCLYDKDFGS-----DTIESVLCGS--LFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRL 493 (1680)
Q Consensus 421 ~~~~~~wIPs~IL~~~Y~nD~~~-----~lVE~vL~e~--LlP~~~~~~~R~~~ll~l~~~LD~~~~kal~~il~~k~~l 493 (1680)
-..++..+=.++.+.++.. ..+..+.-.. -.++.++ ..+...++....-+++.+. ..|+.
T Consensus 158 ----~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~-~~~~~~lL~al~ec~EW~q---i~IL~----- 224 (734)
T KOG1061|consen 158 ----DSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELN-PQLINKLLEALNECTEWGQ---IFILD----- 224 (734)
T ss_pred ----ccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCccccc-HHHHHHHHHHHHHhhhhhH---HHHHH-----
Confidence 1222333333333222220 1111111111 1111111 2345555554444444322 11111
Q ss_pred HHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCc-----hHHHHHHHHHHhhccHHHHHHHHH-------Hhc-
Q 000310 494 QQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEP-----AKAEENFLILDQLKDANVWKILMN-------LLD- 560 (1680)
Q Consensus 494 ~~~~~~~l~l~~~~~~~d~~ei~~kL~~~i~~Ls~~fPDp-----~Ka~~~L~kf~klnD~Ri~kLLk~-------~id- 560 (1680)
++..+.-.+..+.+.- ++.++..++-. .-+...+..+.++.....-.+++. +++
T Consensus 225 ---------~l~~y~p~d~~ea~~i----~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~ 291 (734)
T KOG1061|consen 225 ---------CLAEYVPKDSREAEDI----CERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSS 291 (734)
T ss_pred ---------HHHhcCCCCchhHHHH----HHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecc
Confidence 1111111111122111 12221111111 011222222222211111111111 122
Q ss_pred -CCCCHHHHHHHHHHHHHHhc---CC-Cch----H--HHHHHHHHhhhccccChhHHHHHHHHHHhhcccchhhhHHHHH
Q 000310 561 -SNTSFDQAFTGRDDLLKILG---AK-HRL----Y--DFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCM 629 (1680)
Q Consensus 561 -p~td~~tv~~a~kELlkkL~---~k-~~~----~--d~l~~Ll~R~S~lifNks~V~~LL~~v~~~~~~~~~~~~~~a~ 629 (1680)
++..|-.++|+.--+.++-+ .+ ..+ . -+++..-..+-..+.|.+++.+++..+.......+..+...+.
T Consensus 292 ~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaI 371 (734)
T KOG1061|consen 292 ESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAV 371 (734)
T ss_pred cchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHH
Confidence 23445555555444444322 11 000 0 1344445567777889999999999887765555556677777
Q ss_pred HHHHHHHhhCCcCccccHHHHHHHHhhccccchHhHHHHHHHhhcc
Q 000310 630 DILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGT 675 (1680)
Q Consensus 630 eLL~~IS~~~P~lFk~~v~~Li~lL~~~~~~~~~~aLkiLak~~k~ 675 (1680)
+-+-.++...+.. -+++..|.++++-.-..++.+++.++..+...
T Consensus 372 raig~~aik~e~~-~~cv~~lLell~~~~~yvvqE~~vvi~dilRk 416 (734)
T KOG1061|consen 372 RAIGRLAIKAEQS-NDCVSILLELLETKVDYVVQEAIVVIRDILRK 416 (734)
T ss_pred HHhhhhhhhhhhh-hhhHHHHHHHHhhcccceeeehhHHHHhhhhc
Confidence 8888888888888 77899999999965555666677777766443
No 44
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.61 E-value=0.46 Score=60.69 Aligned_cols=182 Identities=18% Similarity=0.183 Sum_probs=120.6
Q ss_pred HHHHHHHHHHH-Hhcccc-cccHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCCCCCCCC
Q 000310 167 VLSSMQTIMIV-LLEESE-DIQEDLLVILLSALGRNK---NDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHS 241 (1680)
Q Consensus 167 V~~~m~~IL~~-vI~Ese-~vp~~vLd~IL~~l~~~k---~~~a~~lA~~v~~~~~dkL~~~I~qyf~~il~~d~~~~~~ 241 (1680)
+......|+++ |+.... .-.+++|..+...|..+. ...|+.--..||+..++.+...+.. .
T Consensus 105 lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~--------------r 170 (885)
T KOG2023|consen 105 LIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLT--------------R 170 (885)
T ss_pred HHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhccc--------------C
Confidence 33333444444 444332 356888888888875432 2377877788998888766654320 0
Q ss_pred chhHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHH
Q 000310 242 HIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRM 321 (1680)
Q Consensus 242 ~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~ 321 (1680)
.+ --.||-+=.-.++..+.+|..|+..+-..+-....++...-..-.....-+.+|.++.||.
T Consensus 171 pl-----------------~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk 233 (885)
T KOG2023|consen 171 PL-----------------NIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRK 233 (885)
T ss_pred ch-----------------HHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHH
Confidence 01 1112333333456789999999999998876654333322222222344567999999999
Q ss_pred HHHHHhHHHHhcCCCC--CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHH
Q 000310 322 SVLEHVKSCLLTDPSR--ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETV 382 (1680)
Q Consensus 322 ~~ve~~~~iL~~~p~~--~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL 382 (1680)
.+..+...+|..+|++ .-...|++++..|-.|.||.|-++||+-.-.+|... ++.++|
T Consensus 234 ~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqp---i~~~~L 293 (885)
T KOG2023|consen 234 NVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQP---ICKEVL 293 (885)
T ss_pred HHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCc---CcHHHH
Confidence 9999999988888763 223589999999999999999999998887766544 555555
No 45
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.58 E-value=9.8 Score=47.91 Aligned_cols=299 Identities=16% Similarity=0.206 Sum_probs=165.0
Q ss_pred CcchHHHHHHHHHHHhhhcCCCCCCChhH--HHH-HHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhh-hhcccCC-
Q 000310 69 DKDVKLLVATCICEITRITAPEAPYSDDV--LKD-IFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSC-VVMLDLE- 143 (1680)
Q Consensus 69 D~~Vra~vAcCLadIlRI~APdAPytd~q--Lkd-IF~l~i~qf~~L~d~~~p~f~q~~~LLe~LA~vks~-vl~~DL~- 143 (1680)
+.+.-..+.-||..++.-..-+.++.+.. ..+ |...+++.+-...+.+.. ....+|+.++.+=.. +-.++.+
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~---~~~~~L~~~~~l~~~iv~~l~~~~ 132 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSD---LDDRVLELLSRLINLIVRSLSPEK 132 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccc---cchHHHHHHHHHHHHHHHhCCHHH
Confidence 33344444555555655554444344322 222 444444433222222222 445667777755333 3335544
Q ss_pred chHHHHHHHHHHHHhh-----cC------CChhhHHHHHHHHHHHHhccccccc--HHHHHHHHHHhcCCCcH----HHH
Q 000310 144 CDELVNEMYSTFFAVA-----SD------DHPESVLSSMQTIMIVLLEESEDIQ--EDLLVILLSALGRNKND----TAR 206 (1680)
Q Consensus 144 ~~~Li~~lF~~ff~~v-----~~------~~~~~V~~~m~~IL~~vI~Ese~vp--~~vLd~IL~~l~~~k~~----~a~ 206 (1680)
.++++.++|..|+... .. ..+.........|+..+=-+. .+| .++++-++......... ++.
T Consensus 133 q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~-~~~~~~~ll~~l~~~~~~~~~~~~~~~~~ 211 (415)
T PF12460_consen 133 QQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDV-SLPDLEELLQSLLNLALSSEDEFSRLAAL 211 (415)
T ss_pred HHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCccc-CccCHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 5788999999998110 00 123333333344443332222 233 23455444433222222 556
Q ss_pred HHHHHHHHHh--hhhhHHHHHHHHHHhhcCCCCCCCCchhHHH--------HHHHHHhhcchhhhhhhhhhcccccCCCh
Q 000310 207 RLAMNVIEQC--AGKLEAGIKQFLVSSMSGDSRPGHSHIDYHE--------VIYDVYRCSPQILSGVVPYLTGELLTDQL 276 (1680)
Q Consensus 207 ~lA~~v~~~~--~dkL~~~I~qyf~~il~~d~~~~~~~~~~h~--------Li~eL~~~~P~lL~~ViP~Le~EL~sed~ 276 (1680)
++..-++|++ .+.+...+..++..+ .............+ |+...+..+.+++...+-.| .+ .
T Consensus 212 ~~la~LvNK~~~~~~l~~~l~~~~~~~--~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL----~~--~ 283 (415)
T PF12460_consen 212 QLLASLVNKWPDDDDLDEFLDSLLQSI--SSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELL----SS--P 283 (415)
T ss_pred HHHHHHHcCCCChhhHHHHHHHHHhhh--cccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHh----CC--h
Confidence 6777788884 444666666665554 11111111112222 22222222333344433332 22 7
Q ss_pred HHHHHHHHHHHHhhcC-CC-------CCh-----hhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCC---CCh
Q 000310 277 DTRLKAVGLVGDLFAV-PG-------SAN-----NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR---ADA 340 (1680)
Q Consensus 277 ~~Rl~At~llG~mfs~-~~-------s~~-----a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~---~~~ 340 (1680)
.+...|.+.+|-+++. +. ++. =+-|-.+....+..+...+..+|..++.+...+|.+-|.. .+.
T Consensus 284 ~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l 363 (415)
T PF12460_consen 284 ELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPEL 363 (415)
T ss_pred hhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 7899999999999988 32 111 1234556667788888888889999999999999877752 345
Q ss_pred HHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCH
Q 000310 341 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV 379 (1680)
Q Consensus 341 ~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~ 379 (1680)
.+|+.-|.+.|-=+|..||.++..++..+.......+.+
T Consensus 364 ~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~ 402 (415)
T PF12460_consen 364 PTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISE 402 (415)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 678888888887788889999999998877766444444
No 46
>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix. The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. The domain is essential for the recruitment of proteins to double stranded breaks in DNA, which is mediated by interaction with methylated Lys 79 of histone H3 []. ; PDB: 3LGL_A 1XNI_B 3LGF_A 2G3R_A 2IG0_A 3LH0_A 1SSF_A.
Probab=94.41 E-value=0.068 Score=55.11 Aligned_cols=46 Identities=30% Similarity=0.435 Sum_probs=35.7
Q ss_pred CcccccceEEEecCCCCceEEEEEEEecCCCCeeEEEccCCcceeee
Q 000310 1376 IEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLR 1422 (1680)
Q Consensus 1376 ~~~lvG~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdDgd~E~l~ 1422 (1680)
|.++||.||---|-.+.-||.|+|+. +...++.+|..|||.+..|.
T Consensus 1 ~~~~iG~rV~AkWS~n~yyY~G~I~~-~~~~~kykv~FdDG~~~~v~ 46 (122)
T PF09038_consen 1 GSSFIGLRVFAKWSDNGYYYPGKITS-DKGKNKYKVLFDDGYECRVL 46 (122)
T ss_dssp ---STT-EEEEESSTTSEEEEEEEEE-EETTTEEEEEETTS-EEEEE
T ss_pred CCcccccEEEEEEccCCcccCceEee-cCCCCeEEEEecCCccceec
Confidence 45799999999999777779999999 47779999999999986554
No 47
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=94.38 E-value=7.1 Score=50.96 Aligned_cols=219 Identities=16% Similarity=0.231 Sum_probs=117.4
Q ss_pred hhhcCCCcchHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhcccC
Q 000310 63 VLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDL 142 (1680)
Q Consensus 63 ~LL~HkD~~Vra~vAcCLadIlRI~APdAPytd~qLkdIF~l~i~qf~~L~d~~~p~f~q~~~LLe~LA~vks~vl~~DL 142 (1680)
..|.....-||..+|.||+-+.-. -.||.-+++..||+.+-.-.+.=. + +-....|..+.. .+. +
T Consensus 560 ~gl~De~qkVR~itAlalsalaea---a~Pygie~fDsVlkpLwkgir~hr---g---k~laafLkAigy---lip--l- 624 (1172)
T KOG0213|consen 560 HGLKDEQQKVRTITALALSALAEA---ATPYGIEQFDSVLKPLWKGIRQHR---G---KELAAFLKAIGY---LIP--L- 624 (1172)
T ss_pred HhhcccchhhhhHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHHHcc---C---hHHHHHHHHHhh---ccc--c-
Confidence 344555566999999999988765 468999999999998866443211 1 111222222221 111 1
Q ss_pred CchHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHhhh
Q 000310 143 ECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNK----NDTARRLAMNVIEQCAG 218 (1680)
Q Consensus 143 ~~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~vp~~vLd~IL~~l~~~k----~~~a~~lA~~v~~~~~d 218 (1680)
+..-+..+|. ..+|.-+|-|..+-..+.-.++|.-+.+.- .+++|.- .+
T Consensus 625 -----md~eya~yyT--------------revmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r--------~d 677 (1172)
T KOG0213|consen 625 -----MDAEYASYYT--------------REVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIR--------FD 677 (1172)
T ss_pred -----ccHHHHHHhH--------------HHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHh--------hh
Confidence 1112222222 345556666665555555555555443221 1133321 12
Q ss_pred hhHHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHhh--cchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCC
Q 000310 219 KLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRC--SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA 296 (1680)
Q Consensus 219 kL~~~I~qyf~~il~~d~~~~~~~~~~h~Li~eL~~~--~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~ 296 (1680)
.+...+..|.+--+.+|... -..+-+.-.+|..- |-.++.- +-.+|..|.++.|..+.+++.++|+..|..
T Consensus 678 ilp~ff~~fw~rrmA~drr~---ykqlv~ttv~ia~KvG~~~~v~R----~v~~lkde~e~yrkm~~etv~ri~~~lg~~ 750 (1172)
T KOG0213|consen 678 ILPEFFFSFWGRRMALDRRN---YKQLVDTTVEIAAKVGSDPIVSR----VVLDLKDEPEQYRKMVAETVSRIVGRLGAA 750 (1172)
T ss_pred hhHHHHhhhhhhhhhccccc---hhhHHHHHHHHHHHhCchHHHHH----HhhhhccccHHHHHHHHHHHHHHHhccccc
Confidence 22223333332222222110 00112222222211 2233333 335678899999999999999999876532
Q ss_pred -----------------h------------------------hhhc-HHHHHHHHhhhcCCChhHHHHHHHHhHHH
Q 000310 297 -----------------N------------------------NEQF-HSVFSEFLKRLTDRIVAVRMSVLEHVKSC 330 (1680)
Q Consensus 297 -----------------~------------------------a~~y-~~~w~~fL~R~~D~s~~VR~~~ve~~~~i 330 (1680)
| ++.| |.+-..-|.|.+.+++.||....+.+..|
T Consensus 751 diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~l 826 (1172)
T KOG0213|consen 751 DIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSL 826 (1172)
T ss_pred cccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 1 1222 66777778899999999999877766653
No 48
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.28 E-value=0.46 Score=56.88 Aligned_cols=97 Identities=19% Similarity=0.246 Sum_probs=77.4
Q ss_pred ccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCC-----------CC
Q 000310 271 LLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR-----------AD 339 (1680)
Q Consensus 271 L~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~-----------~~ 339 (1680)
+++.+..+|..|++.+| +++--+-.++.+|=.+|...+.+ | ...||+.+++.+-+++..|... ..
T Consensus 36 v~~~~~~vR~~al~cLG-l~~Lld~~~a~~~l~l~~~~~~~--~-~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~ 111 (298)
T PF12719_consen 36 VQSSDPAVRELALKCLG-LCCLLDKELAKEHLPLFLQALQK--D-DEEVKITALKALFDLLLTHGIDIFDSESDNDESVD 111 (298)
T ss_pred hcCCCHHHHHHHHHHHH-HHHHhChHHHHHHHHHHHHHHHh--C-CHHHHHHHHHHHHHHHHHcCchhccchhccCccch
Confidence 45689999999999999 66655557888776666666633 5 9999999999999999988421 12
Q ss_pred hHHHHHHHHhhhCCChhHHHHHHHHHHHHhhh
Q 000310 340 APQILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1680)
Q Consensus 340 ~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~ 371 (1680)
...+++.|..-|.+.++.||..||+++|.+-.
T Consensus 112 ~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 112 SKSLLKILTKFLDSENPELQAIAVEGLCKLLL 143 (298)
T ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 34688888888988899999999999988654
No 49
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.11 E-value=7.5 Score=51.91 Aligned_cols=129 Identities=13% Similarity=0.162 Sum_probs=99.6
Q ss_pred ccCCChHHHHHHHH-HHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHh
Q 000310 271 LLTDQLDTRLKAVG-LVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCD 349 (1680)
Q Consensus 271 L~sed~~~Rl~At~-llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~ 349 (1680)
|.+-+...|+.|.+ ++..|..+. ++..=+|++-+.|..| +++++..+=-+...+-..+|. ++-..++.+.+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~--dmssLf~dViK~~~tr----d~ElKrL~ylYl~~yak~~P~--~~lLavNti~k 99 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGE--DMSSLFPDVIKNVATR----DVELKRLLYLYLERYAKLKPE--LALLAVNTIQK 99 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHhccCHH--HHHHHHHHHHh
Confidence 66777888888875 567777654 5778888888888854 788887776666666667773 44456789999
Q ss_pred hhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000310 350 RLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1680)
Q Consensus 350 rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~ 410 (1680)
=|.|+++.+|..|+..++.+-.. .+-+-++..+..-+-|+.+-||+.|+-+++++|+.
T Consensus 100 Dl~d~N~~iR~~AlR~ls~l~~~---el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l 157 (757)
T COG5096 100 DLQDPNEEIRGFALRTLSLLRVK---ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL 157 (757)
T ss_pred hccCCCHHHHHHHHHHHHhcChH---HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc
Confidence 99999999999987777554332 33345678889999999999999999999999973
No 50
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=93.92 E-value=0.083 Score=52.82 Aligned_cols=106 Identities=12% Similarity=0.070 Sum_probs=57.0
Q ss_pred hhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhh-hcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCC--
Q 000310 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE-QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRAD-- 339 (1680)
Q Consensus 263 ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~-~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~-- 339 (1680)
++|.|-.-|...+..+|..|..+|+.|.......... .....+..++.-++|.++.||..++.+..++....+....
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 6677777777888999999999999988762100000 1113444444445555555555555555554433221000
Q ss_pred -hHHHHHHHHhhhCCChhHHHHHHHHHHHH
Q 000310 340 -APQILTALCDRLLDFDENVRKQVVAVICD 368 (1680)
Q Consensus 340 -~~eii~~L~~rL~D~DEkVR~aaV~ai~~ 368 (1680)
...+++.|...|.+.|..||..++.+++.
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~ 117 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSN 117 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 01234445555555555555555555443
No 51
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.60 E-value=1.3 Score=60.17 Aligned_cols=152 Identities=14% Similarity=0.176 Sum_probs=108.2
Q ss_pred hHHHHHHHHHh---hcc--hhhhhhhhhhcccc----cCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcC
Q 000310 244 DYHEVIYDVYR---CSP--QILSGVVPYLTGEL----LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTD 314 (1680)
Q Consensus 244 ~~h~Li~eL~~---~~P--~lL~~ViP~Le~EL----~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D 314 (1680)
+.|++|..+.. ..+ .+|....|.+..-- ...+++++..||-.||+|.-- ++.|-..|-+++-.-+.+.
T Consensus 896 d~~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i-Sa~fces~l~llftimeks-- 972 (1251)
T KOG0414|consen 896 DLADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI-SAEFCESHLPLLFTIMEKS-- 972 (1251)
T ss_pred hHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcC--
Confidence 46666665543 233 56666777776544 345699999999999999865 3456555544444444432
Q ss_pred CChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCCh
Q 000310 315 RIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSV 394 (1680)
Q Consensus 315 ~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~ 394 (1680)
.+|-||.-+|=+++++...-|.. +......|-.||+|.+..||..|+.++.-+.....-.|-. .+..+|--+-|-..
T Consensus 973 p~p~IRsN~VvalgDlav~fpnl--ie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKG-ql~eMA~cl~D~~~ 1049 (1251)
T KOG0414|consen 973 PSPRIRSNLVVALGDLAVRFPNL--IEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKG-QLSEMALCLEDPNA 1049 (1251)
T ss_pred CCceeeecchheccchhhhcccc--cchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcc-cHHHHHHHhcCCcH
Confidence 57899999999999998887753 3467889999999999999999999998776655433322 24566777888888
Q ss_pred hHHHHHH
Q 000310 395 LVKRYTM 401 (1680)
Q Consensus 395 ~VR~eAm 401 (1680)
.||.-|=
T Consensus 1050 ~IsdlAk 1056 (1251)
T KOG0414|consen 1050 EISDLAK 1056 (1251)
T ss_pred HHHHHHH
Confidence 7665443
No 52
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.51 E-value=0.68 Score=51.36 Aligned_cols=86 Identities=20% Similarity=0.176 Sum_probs=70.6
Q ss_pred HHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHHHH
Q 000310 247 EVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEH 326 (1680)
Q Consensus 247 ~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~ 326 (1680)
..+-.|..-.|.++-..+|.|..-|..+++.+|..|...|.+++.. ++.+-.+.++..++.-..|.++.||.....+
T Consensus 10 ~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~ 86 (178)
T PF12717_consen 10 IALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DMIKVKGQLFSRILKLLVDENPEIRSLARSF 86 (178)
T ss_pred HHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---CceeehhhhhHHHHHHHcCCCHHHHHHHHHH
Confidence 3455666777888888999999999999999999999999998875 5677777888888888899999999888888
Q ss_pred hHHHHhc-CC
Q 000310 327 VKSCLLT-DP 335 (1680)
Q Consensus 327 ~~~iL~~-~p 335 (1680)
...++.. +|
T Consensus 87 ~~e~~~~~~~ 96 (178)
T PF12717_consen 87 FSELLKKRNP 96 (178)
T ss_pred HHHHHHhccc
Confidence 8887776 44
No 53
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.23 E-value=0.22 Score=50.07 Aligned_cols=66 Identities=20% Similarity=0.169 Sum_probs=49.3
Q ss_pred HHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCC---CHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000310 341 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI---PVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1680)
Q Consensus 341 ~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V---~~elL~~LaeR~RDKK~~VR~eAm~~La~L 407 (1680)
.+|++.+..++.|.|.+||..||+++..++...-..+ =.+++..|..++.|-...||..| +.|-++
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRL 94 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHH
Confidence 4788888888888999999888888888876443332 23567788888888888888877 555444
No 54
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=93.17 E-value=0.73 Score=52.49 Aligned_cols=102 Identities=19% Similarity=0.118 Sum_probs=66.7
Q ss_pred hhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHH-HHHHHhhhcCCChhHHHHHHHHhHHHHhcCCC--C---C
Q 000310 265 PYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSV-FSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPS--R---A 338 (1680)
Q Consensus 265 P~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~-w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~--~---~ 338 (1680)
|.|=..+.....-+|..|..+|-.|+..-+ -++.+ ......-..++++.||..+++++..++...+. . .
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 333344445667788888888888886422 12345 45555567889999999999999888887761 1 1
Q ss_pred C--hHHHHHHHHhhhCCChhHHHHHHHHHHHHhhh
Q 000310 339 D--APQILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1680)
Q Consensus 339 ~--~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~ 371 (1680)
. ...+++.+...+.|++..||.++-.++..+..
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 1 24688999999999999999999888877643
No 55
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=92.87 E-value=8.7 Score=48.95 Aligned_cols=304 Identities=14% Similarity=0.169 Sum_probs=170.5
Q ss_pred HHHHHhhhcCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHH-HHHHHhhhhhhhcccCCchHHHHHHHHHHHH
Q 000310 79 CICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVI-LETLAKYRSCVVMLDLECDELVNEMYSTFFA 157 (1680)
Q Consensus 79 CLadIlRI~APdAPytd~qLkdIF~l~i~qf~~L~d~~~p~f~q~~~L-Le~LA~vks~vl~~DL~~~~Li~~lF~~ff~ 157 (1680)
.|+.|+|+.+----|...+.+.+|--+..-|.+ .++|..|++|+ ++-|+.+--=|+| -.=...=+
T Consensus 44 lls~l~yll~tge~f~e~~at~lff~i~KlFQh----kd~~Lrq~VY~aIkelS~~tedvlm----------~tssiMkD 109 (898)
T COG5240 44 LLSNLFYLLSTGELFPEATATNLFFAILKLFQH----KDLYLRQCVYSAIKELSKLTEDVLM----------GTSSIMKD 109 (898)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHhhcchhhhH----------HHHHHHHh
Confidence 367889998888888888888888877777753 67889999886 4555543222221 11111111
Q ss_pred hhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHH-hcC---CCcH----HHHHH---HHHHHHHhhhhhHHHHHH
Q 000310 158 VASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSA-LGR---NKND----TARRL---AMNVIEQCAGKLEAGIKQ 226 (1680)
Q Consensus 158 ~v~~~~~~~V~~~m~~IL~~vI~Ese~vp~~vLd~IL~~-l~~---~k~~----~a~~l---A~~v~~~~~dkL~~~I~q 226 (1680)
+.++-+..+......-|..||++.-. +. ..-+|.+ |.. .... .||.| +.+.+.+-.+.-|.+|..
T Consensus 110 -~~~g~~~~~kp~AiRsL~~Vid~~tv-~~--~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~ 185 (898)
T COG5240 110 -LNGGVPDDVKPMAIRSLFSVIDGETV-YD--FERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLD 185 (898)
T ss_pred -hccCCccccccHHHHHHHHhcCcchh-hh--HHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhh
Confidence 12223333444444445555554221 11 1112211 110 1111 22322 112222212222222211
Q ss_pred HHHHh--hcCC-CC-CCCCch-hHH--HHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhh
Q 000310 227 FLVSS--MSGD-SR-PGHSHI-DYH--EVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE 299 (1680)
Q Consensus 227 yf~~i--l~~d-~~-~~~~~~-~~h--~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~ 299 (1680)
. ... ..|. ++ +....+ ++| .|+|++-+..--.++..+..+-..+...|-.--.+-++.+..++-. .+++..
T Consensus 186 l-~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~-n~q~~~ 263 (898)
T COG5240 186 L-KQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDKMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKE-NSQALL 263 (898)
T ss_pred H-hhCcCccCCcccCCCCChHHHHHHHHHHHHHhcccHHHHHHHHHHhhcccccccchhheehHHHHHHHHHh-ChHHHH
Confidence 0 000 0111 11 111222 455 6799999988777777777776666555544445556666666655 457788
Q ss_pred hcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCH
Q 000310 300 QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV 379 (1680)
Q Consensus 300 ~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~ 379 (1680)
+..+..+.||+- +-..|-++....+-.+-..|-......+.+..|+-.|.-+.---|.+|...+.++|...++.|..
T Consensus 264 q~rpfL~~wls~---k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~v 340 (898)
T COG5240 264 QLRPFLNSWLSD---KFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSV 340 (898)
T ss_pred HHHHHHHHHhcC---cchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeee
Confidence 888889999875 44455555444443332333222345577889999999999999999999999999988887654
Q ss_pred HHHHHHHHhhccCChhHHHHHHHHHHH
Q 000310 380 ETVKLVAERLRDKSVLVKRYTMERLAD 406 (1680)
Q Consensus 380 elL~~LaeR~RDKK~~VR~eAm~~La~ 406 (1680)
-- ..+-..+-|-+..+-.+||++|-+
T Consensus 341 cN-~evEsLIsd~Nr~IstyAITtLLK 366 (898)
T COG5240 341 CN-KEVESLISDENRTISTYAITTLLK 366 (898)
T ss_pred cC-hhHHHHhhcccccchHHHHHHHHH
Confidence 21 123455677788888888887754
No 56
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=92.52 E-value=14 Score=49.41 Aligned_cols=103 Identities=17% Similarity=0.129 Sum_probs=86.8
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHH-HH
Q 000310 304 VFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE-TV 382 (1680)
Q Consensus 304 ~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~e-lL 382 (1680)
.-+.|++=+.|.++.||...+.....+ ........++..+.+++.|++.-||..|+-+|..+-.-..+.++.. ..
T Consensus 93 avNti~kDl~d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~ 168 (757)
T COG5096 93 AVNTIQKDLQDPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLI 168 (757)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHH
Confidence 356788899999999999999887642 1223456788999999999999999999999988776777777777 77
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000310 383 KLVAERLRDKSVLVKRYTMERLADIFRG 410 (1680)
Q Consensus 383 ~~LaeR~RDKK~~VR~eAm~~La~LY~~ 410 (1680)
..+.+.+.|-.+.|=..|+.+|..++..
T Consensus 169 ~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 169 DILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 7788999999999999999999999987
No 57
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.34 E-value=2.7 Score=54.09 Aligned_cols=110 Identities=24% Similarity=0.289 Sum_probs=88.6
Q ss_pred HHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHH
Q 000310 251 DVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSC 330 (1680)
Q Consensus 251 eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~i 330 (1680)
+.-...|+-|...++.|++-|+...+-.|.+|.+.+..+|-.+ +-+.......-..-.+|..|++.-||...++.+..+
T Consensus 335 qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~-sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkL 413 (1128)
T COG5098 335 QMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLN-SKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKL 413 (1128)
T ss_pred hhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCc-ccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 3556778889999999999999999999999999999999875 367777778888889999999999999999999999
Q ss_pred HhcCCCCCC-----------------hHHHH---HHHHhhhCCChhHHHHH
Q 000310 331 LLTDPSRAD-----------------APQIL---TALCDRLLDFDENVRKQ 361 (1680)
Q Consensus 331 L~~~p~~~~-----------------~~eii---~~L~~rL~D~DEkVR~a 361 (1680)
|+.||-..+ +.++. +.+++++.|.+..|-..
T Consensus 414 L~~HPF~~~h~~~l~~~~wek~L~~~E~qlNslk~~~qe~l~D~E~Eveqd 464 (1128)
T COG5098 414 LMRHPFASEHGSQLRLTLWEKNLGSAENQLNSLKSGLQETLCDGEKEVEQD 464 (1128)
T ss_pred HhcCChhhhccchhhhHHHHhhcchhHhHhhccchhhhccccchHHhhhhh
Confidence 999984211 01221 45566778887777644
No 58
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=91.45 E-value=9.3 Score=45.90 Aligned_cols=106 Identities=18% Similarity=0.245 Sum_probs=75.5
Q ss_pred HHHHHHHhh-hcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhh-hcCCC---
Q 000310 303 SVFSEFLKR-LTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACH-ALNSI--- 377 (1680)
Q Consensus 303 ~~w~~fL~R-~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~-~l~~V--- 377 (1680)
.++..++-. ..=.++.||..-+++.+-+-.-+. ..+.+-+.-+...+..-++.||..|+++++|+... .+..+
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~--~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~ 103 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK--ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSE 103 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccch
Confidence 667766622 233467999999999986555443 33455555555555444999999999999999863 22222
Q ss_pred C--------HHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000310 378 P--------VETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1680)
Q Consensus 378 ~--------~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~ 410 (1680)
+ ..+++.+..-+.+-...||..|.+++++|+-.
T Consensus 104 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 104 SDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred hccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 2 24667777777777889999999999998875
No 59
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=91.43 E-value=0.27 Score=38.91 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=22.9
Q ss_pred HHHHHHhhhCCChhHHHHHHHHHHHHhhh
Q 000310 343 ILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1680)
Q Consensus 343 ii~~L~~rL~D~DEkVR~aaV~ai~~la~ 371 (1680)
|++.|...+.|++++||.+|+.+++.++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 46677888889999999999988888764
No 60
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=91.38 E-value=71 Score=43.56 Aligned_cols=143 Identities=15% Similarity=0.135 Sum_probs=90.9
Q ss_pred hhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHh------------
Q 000310 265 PYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLL------------ 332 (1680)
Q Consensus 265 P~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~------------ 332 (1680)
|.+.+|-.-++.+.|.+..+-=...+-+ ..++.-..+|+-.-.|..|+.+.||...+-....||.
T Consensus 437 s~~~~e~e~dn~~~~s~s~e~qk~~k~~---~~v~evg~~~~~~~~rClDkaaavR~~al~s~tk~l~l~~~~~~~sIl~ 513 (1529)
T KOG0413|consen 437 SDSDEENEGDNEENVSKSKEEQKKEKKA---KEVKEVGVLYNIVYMRCLDKAAAVRLHALNSLTKILQLQSHREAFSILC 513 (1529)
T ss_pred CchHhhhcccchhhhhhHHHHHHHhhhh---hhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence 3344444445555554443332222222 2234444688888899999999999987776666553
Q ss_pred ---cCCC---------------------C---------CC--------------------hHHHHHHHHhhhC-CChhHH
Q 000310 333 ---TDPS---------------------R---------AD--------------------APQILTALCDRLL-DFDENV 358 (1680)
Q Consensus 333 ---~~p~---------------------~---------~~--------------------~~eii~~L~~rL~-D~DEkV 358 (1680)
|.+. . .. ...++..+..|+. |.-..|
T Consensus 514 ~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~~l~~~~~ii~d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v 593 (1529)
T KOG0413|consen 514 ATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTDLLLDEQQIIQDFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPV 593 (1529)
T ss_pred HhcCCccccchhHHHhchhhhhcccCcccccccchhhcCcchhhhhhcchhhhhccccHHHHHHHHHHHHHhccCCCccc
Confidence 1100 0 00 1233455666776 888899
Q ss_pred HHHHHHHHHHhhh-hhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000310 359 RKQVVAVICDVAC-HALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1680)
Q Consensus 359 R~aaV~ai~~la~-~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~ 410 (1680)
|++++..+..+.. ......=++.|+.|-+.+||.-.+||+.+...|+++-..
T Consensus 594 ~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~ 646 (1529)
T KOG0413|consen 594 KKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLR 646 (1529)
T ss_pred chhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhh
Confidence 9998887755433 122223334589999999999999999999999998875
No 61
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.26 E-value=8.3 Score=51.01 Aligned_cols=165 Identities=18% Similarity=0.241 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHhcc-------cccccHHHHHH-HH---HHhcCCCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCC
Q 000310 167 VLSSMQTIMIVLLEE-------SEDIQEDLLVI-LL---SALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGD 235 (1680)
Q Consensus 167 V~~~m~~IL~~vI~E-------se~vp~~vLd~-IL---~~l~~~k~~~a~~lA~~v~~~~~dkL~~~I~qyf~~il~~d 235 (1680)
+...+..||..++.- ...||...|.+ || ..++++.. ..+|.|.--+.|.++..=..
T Consensus 220 l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~------------daSd~M~DiLaqvatntdss- 286 (866)
T KOG1062|consen 220 LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDA------------DASDLMNDILAQVATNTDSS- 286 (866)
T ss_pred HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCc------------cHHHHHHHHHHHHHhccccc-
Confidence 444455555555543 12367766663 22 33455532 33455555566665542111
Q ss_pred CCCCCCch-hHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCC------------------CC
Q 000310 236 SRPGHSHI-DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG------------------SA 296 (1680)
Q Consensus 236 ~~~~~~~~-~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~------------------s~ 296 (1680)
.+.+. -+|+-+..|+.+- .+..+|.+|+..||+-+..+. .+
T Consensus 287 ---kN~GnAILYE~V~TI~~I~-----------------~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~ 346 (866)
T KOG1062|consen 287 ---KNAGNAILYECVRTIMDIR-----------------SNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPT 346 (866)
T ss_pred ---ccchhHHHHHHHHHHHhcc-----------------CCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcH
Confidence 11111 1455555555442 345566666666666666553 34
Q ss_pred hhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhh
Q 000310 297 NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1680)
Q Consensus 297 ~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~ 371 (1680)
.+++|+.+--+ ...|.++.||...+|..-.++..+- ...+++.|.+-|.-.|+.+|...+..|+.+|-
T Consensus 347 avqrHr~tIle---CL~DpD~SIkrralELs~~lvn~~N----v~~mv~eLl~fL~~~d~~~k~~~as~I~~laE 414 (866)
T KOG1062|consen 347 AVQRHRSTILE---CLKDPDVSIKRRALELSYALVNESN----VRVMVKELLEFLESSDEDFKADIASKIAELAE 414 (866)
T ss_pred HHHHHHHHHHH---HhcCCcHHHHHHHHHHHHHHhcccc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 68888887654 5679999999999999877665432 45677777777777799999998888887664
No 62
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=90.91 E-value=3 Score=54.82 Aligned_cols=128 Identities=17% Similarity=0.262 Sum_probs=77.7
Q ss_pred cchhhhhhhhhhccccc----CCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhc---CCChhHHHHHHHHhH
Q 000310 256 SPQILSGVVPYLTGELL----TDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLT---DRIVAVRMSVLEHVK 328 (1680)
Q Consensus 256 ~P~lL~~ViP~Le~EL~----sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~---D~s~~VR~~~ve~~~ 328 (1680)
.+.+..-+++.|..+|. ..+...++.+.+.||.| +. |.+...++.-.. +.+..||++++.+..
T Consensus 480 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~-g~---------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr 549 (618)
T PF01347_consen 480 SRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL-GH---------PESIPVLLPYIEGKEEVPHFIRVAAIQALR 549 (618)
T ss_dssp -SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTT
T ss_pred chhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc-CC---------chhhHHHHhHhhhccccchHHHHHHHHHHH
Confidence 45566667777777766 45779999999999987 22 223334443333 559999999999988
Q ss_pred HHHhcCCCCCChHHHHHHHHhhhCCChh--HHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhh-ccCChhHHHHHHHHH
Q 000310 329 SCLLTDPSRADAPQILTALCDRLLDFDE--NVRKQVVAVICDVACHALNSIPVETVKLVAERL-RDKSVLVKRYTMERL 404 (1680)
Q Consensus 329 ~iL~~~p~~~~~~eii~~L~~rL~D~DE--kVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~-RDKK~~VR~eAm~~L 404 (1680)
.+....| ..+.+.|..-+.|..+ .||.+|+-++-. ..-+..+|..++..+ .|+...|+......|
T Consensus 550 ~~~~~~~-----~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~------~~P~~~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 550 RLAKHCP-----EKVREILLPIFMNTTEDPEVRIAAYLILMR------CNPSPSVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp TGGGT-H-----HHHHHHHHHHHH-TTS-HHHHHHHHHHHHH------T---HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred HHhhcCc-----HHHHHHHHHHhcCCCCChhHHHHHHHHHHh------cCCCHHHHHHHHHHHhhCchHHHHHHHHHhc
Confidence 7644433 2566666666666544 399997666522 113556788888887 778788887665543
No 63
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=90.67 E-value=0.16 Score=45.03 Aligned_cols=52 Identities=23% Similarity=0.206 Sum_probs=35.0
Q ss_pred hhHHHHHHHHhHHHHhcCCC--CCChHHHHHHHHhhhCCChhHHHHHHHHHHHH
Q 000310 317 VAVRMSVLEHVKSCLLTDPS--RADAPQILTALCDRLLDFDENVRKQVVAVICD 368 (1680)
Q Consensus 317 ~~VR~~~ve~~~~iL~~~p~--~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~ 368 (1680)
|.||...+...+.+....+. .....+++..|...|.|+++.||.+|+.+++.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 46788877777764333321 11234777888888888888888888877754
No 64
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=90.56 E-value=1.3e+02 Score=45.18 Aligned_cols=141 Identities=11% Similarity=0.103 Sum_probs=92.5
Q ss_pred hhhcccccCCChHHHHHHHHHHHHhhcCCCCChh-----hhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCC-CC
Q 000310 265 PYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANN-----EQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPS-RA 338 (1680)
Q Consensus 265 P~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a-----~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~-~~ 338 (1680)
+.|-.-|...+.+++..|+..|..+-.+.. +.. .---+..-.||+. -+..+|...+.....|-..+.. +.
T Consensus 407 k~LV~LL~~~~~evQ~~Av~aL~~L~~~~~-e~~~aIi~~ggIp~LV~LL~s---~s~~iQ~~A~~~L~nLa~~ndenr~ 482 (2102)
T PLN03200 407 KVLVGLITMATADVQEELIRALSSLCCGKG-GLWEALGGREGVQLLISLLGL---SSEQQQEYAVALLAILTDEVDESKW 482 (2102)
T ss_pred hhhhhhhccCCHHHHHHHHHHHHHHhCCCH-HHHHHHHHcCcHHHHHHHHcC---CCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 334445666778999999999988775532 111 1112344455554 4678887777776654333321 10
Q ss_pred --ChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcC---CC-CHHHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 000310 339 --DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN---SI-PVETVKLVAERLRDKSVLVKRYTMERLADIFR 409 (1680)
Q Consensus 339 --~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~---~V-~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~ 409 (1680)
.....+..|...|..++.++|.+||-+++.++...-. .| ....+..|.+.+++....+|+.|...|++|-.
T Consensus 483 aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~ 559 (2102)
T PLN03200 483 AITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVR 559 (2102)
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 0013457888899999999999999999998873211 12 22345566777888889999999999998854
No 65
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=90.51 E-value=1.8 Score=55.59 Aligned_cols=134 Identities=18% Similarity=0.220 Sum_probs=90.7
Q ss_pred HHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHH
Q 000310 245 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVL 324 (1680)
Q Consensus 245 ~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~v 324 (1680)
.-..+..|-...|.+.+--+-++..-|.++.-..|-..++..|.+.... . . ++ +|+
T Consensus 282 islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~----~--------------~--d~----qm~ 337 (1128)
T COG5098 282 ISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHF----K--------------K--DG----QMV 337 (1128)
T ss_pred HHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH----h--------------c--ch----hhH
Confidence 3445666777777777776666666667777777776666666655431 0 0 11 455
Q ss_pred HHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCC--CHHHHHHHHHhhccCChhHHHHHHH
Q 000310 325 EHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI--PVETVKLVAERLRDKSVLVKRYTME 402 (1680)
Q Consensus 325 e~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V--~~elL~~LaeR~RDKK~~VR~eAm~ 402 (1680)
++.++- ...++.-|.+||.|+-.-+|..|++++..+--.....+ -.++.+.++.|+-||..-||+.||.
T Consensus 338 e~~~~~---------~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaik 408 (1128)
T COG5098 338 EHYKQK---------LNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIK 408 (1128)
T ss_pred hhHHHH---------HHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 555442 24678888889999999999887777655432222222 3467888999999999999999999
Q ss_pred HHHHHHHHh
Q 000310 403 RLADIFRGC 411 (1680)
Q Consensus 403 ~La~LY~~~ 411 (1680)
.+++|.-.+
T Consensus 409 l~SkLL~~H 417 (1128)
T COG5098 409 LCSKLLMRH 417 (1128)
T ss_pred HHHHHHhcC
Confidence 999887655
No 66
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=89.87 E-value=0.54 Score=46.98 Aligned_cols=100 Identities=14% Similarity=0.102 Sum_probs=72.2
Q ss_pred HHhhhcCCChhHHHHHHHHhHHHHhcCCCC---CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcC----CCCHH
Q 000310 308 FLKRLTDRIVAVRMSVLEHVKSCLLTDPSR---ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN----SIPVE 380 (1680)
Q Consensus 308 fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~---~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~----~V~~e 380 (1680)
++.-..|.++.+|...+.+...+-...|.. -....+++.|...|.|.+.+||..++.+++.++..... .+...
T Consensus 12 l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 91 (120)
T cd00020 12 LVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAG 91 (120)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCC
Confidence 333444556788888888877755543321 00125678888899999999999999999999764321 12233
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHH
Q 000310 381 TVKLVAERLRDKSVLVKRYTMERLADI 407 (1680)
Q Consensus 381 lL~~LaeR~RDKK~~VR~eAm~~La~L 407 (1680)
++..+.+.+.+....||+.|+..|+.|
T Consensus 92 ~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 92 GVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 677888999999999999999999876
No 67
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=89.76 E-value=0.58 Score=55.32 Aligned_cols=50 Identities=22% Similarity=0.308 Sum_probs=40.7
Q ss_pred CcccccceEEEecCCCCceEEEEEEEecCCCCeeEEEcc-CCcceeeeccc
Q 000310 1376 IEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYD-DEDVEVLRLDK 1425 (1680)
Q Consensus 1376 ~~~lvG~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~Yd-Dgd~E~l~L~~ 1425 (1680)
-..=||-+|.-.|-.|..||.++|++.+...+.-.|+|. -|..|.+.|..
T Consensus 67 ~~WkvGd~C~A~~s~Dg~~Y~A~I~~i~~~~~~~~V~f~gYgn~e~v~l~d 117 (264)
T PF06003_consen 67 KKWKVGDKCMAVYSEDGQYYPATIESIDEEDGTCVVVFTGYGNEEEVNLSD 117 (264)
T ss_dssp T---TT-EEEEE-TTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGG
T ss_pred cCCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEcccCCeEeeehhh
Confidence 356699999999999999999999999999999999995 58888888863
No 68
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.66 E-value=12 Score=49.58 Aligned_cols=259 Identities=19% Similarity=0.181 Sum_probs=144.0
Q ss_pred hhhhcCCCcchHHHHHHHHHHH----hhhcCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhh-hh
Q 000310 62 PVLLKHQDKDVKLLVATCICEI----TRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYR-SC 136 (1680)
Q Consensus 62 ~~LL~HkD~~Vra~vAcCLadI----lRI~APdAPytd~qLkdIF~l~i~qf~~L~d~~~p~f~q~~~LLe~LA~vk-s~ 136 (1680)
...|.||..-|-.=+|--++.+ -|+.+| . --+.++|++. |....--.++-+|-.+|-.. .-
T Consensus 251 ~s~l~~K~emV~~EaArai~~l~~~~~r~l~p----a----vs~Lq~flss------p~~~lRfaAvRtLnkvAm~~P~~ 316 (865)
T KOG1078|consen 251 ESCLRHKSEMVIYEAARAIVSLPNTNSRELAP----A----VSVLQLFLSS------PKVALRFAAVRTLNKVAMKHPQA 316 (865)
T ss_pred HHHHhchhHHHHHHHHHHHhhccccCHhhcch----H----HHHHHHHhcC------cHHHHHHHHHHHHHHHHHhCCcc
Confidence 3556777777766666555443 244455 2 2234444432 22222122344555555322 23
Q ss_pred hhcccCCchHHHHHH--------HHHHHHhhcCCChhhHHHHHHHHHHHH---hcccccccHHHHHHHHHHhcCCCcHHH
Q 000310 137 VVMLDLECDELVNEM--------YSTFFAVASDDHPESVLSSMQTIMIVL---LEESEDIQEDLLVILLSALGRNKNDTA 205 (1680)
Q Consensus 137 vl~~DL~~~~Li~~l--------F~~ff~~v~~~~~~~V~~~m~~IL~~v---I~Ese~vp~~vLd~IL~~l~~~k~~~a 205 (1680)
|.+|.++-+.||... ..+++.. +...+|...|-.|-+.+ =+|.--|--+-+..+...+.
T Consensus 317 v~~cN~elE~lItd~NrsIat~AITtLLKT---G~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp------- 386 (865)
T KOG1078|consen 317 VTVCNLDLESLITDSNRSIATLAITTLLKT---GTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFP------- 386 (865)
T ss_pred ccccchhHHhhhcccccchhHHHHHHHHHh---cchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhcc-------
Confidence 344555434444332 2233332 33556666666554443 33333343333333333332
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHH
Q 000310 206 RRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGL 285 (1680)
Q Consensus 206 ~~lA~~v~~~~~dkL~~~I~qyf~~il~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~l 285 (1680)
+....+-.|+.++|.++++. +-.....+.|..+-+..|+.=-.-+-.|+.-. +|=+.+..||+.
T Consensus 387 -------------~k~~~~m~FL~~~Lr~eGg~-e~K~aivd~Ii~iie~~pdsKe~~L~~LCefI--EDce~~~i~~rI 450 (865)
T KOG1078|consen 387 -------------RKHTVMMNFLSNMLREEGGF-EFKRAIVDAIIDIIEENPDSKERGLEHLCEFI--EDCEFTQIAVRI 450 (865)
T ss_pred -------------HHHHHHHHHHHHHHHhccCc-hHHHHHHHHHHHHHHhCcchhhHHHHHHHHHH--HhccchHHHHHH
Confidence 23344556777777654221 11223567777777878875444333333322 456678899999
Q ss_pred HHHhhcCCCCChhhhcHHHHHHH-HhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHH
Q 000310 286 VGDLFAVPGSANNEQFHSVFSEF-LKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVA 364 (1680)
Q Consensus 286 lG~mfs~~~s~~a~~y~~~w~~f-L~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ 364 (1680)
|+.+--. | -....|+-|-.| .+|..=-+..||.+.|.++..|....+.. .+-|...|.++++|.|+.||-.|--
T Consensus 451 LhlLG~E-g--P~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l--~~sI~vllkRc~~D~DdevRdrAtf 525 (865)
T KOG1078|consen 451 LHLLGKE-G--PKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVL--LPSILVLLKRCLNDSDDEVRDRATF 525 (865)
T ss_pred HHHHhcc-C--CCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCc--cccHHHHHHHHhcCchHHHHHHHHH
Confidence 9866543 2 123445555544 46777778999999999999999666542 3468899999999999999988433
Q ss_pred H
Q 000310 365 V 365 (1680)
Q Consensus 365 a 365 (1680)
.
T Consensus 526 ~ 526 (865)
T KOG1078|consen 526 Y 526 (865)
T ss_pred H
Confidence 3
No 69
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=89.54 E-value=2.5 Score=42.25 Aligned_cols=87 Identities=21% Similarity=0.256 Sum_probs=70.3
Q ss_pred HHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCC-CCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHH
Q 000310 302 HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDP-SRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE 380 (1680)
Q Consensus 302 ~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p-~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~e 380 (1680)
..+|+.++.-.+|..++||..-+....+.+.++. .......|+..+..-|.|+|.=|=+.||++++.++...+ .+
T Consensus 2 ~~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p----~~ 77 (92)
T PF10363_consen 2 RETLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP----DE 77 (92)
T ss_pred hHHHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh----HH
Confidence 3688999999999999999999999999888765 334456788899999999999999999999999887653 34
Q ss_pred HHHHHHHhhccC
Q 000310 381 TVKLVAERLRDK 392 (1680)
Q Consensus 381 lL~~LaeR~RDK 392 (1680)
++..|.++-.|+
T Consensus 78 vl~~L~~~y~~~ 89 (92)
T PF10363_consen 78 VLPILLDEYADP 89 (92)
T ss_pred HHHHHHHHHhCc
Confidence 565555555444
No 70
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.43 E-value=0.54 Score=60.11 Aligned_cols=97 Identities=26% Similarity=0.291 Sum_probs=83.7
Q ss_pred HHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHH
Q 000310 306 SEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLV 385 (1680)
Q Consensus 306 ~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~L 385 (1680)
-+|+--+.|-=-+||.+.|.....+-.++|.. +..-+..|.+.++|-.+.||+.++.++.-++.+ -.+..+.|..+
T Consensus 376 GA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F--A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~--l~i~eeql~~i 451 (823)
T KOG2259|consen 376 GALVHGLEDEFYEVRRAAVASLCSLATSSPGF--AVRALDFLVDMFNDEIEVVRLKAIFALTMISVH--LAIREEQLRQI 451 (823)
T ss_pred ceeeeechHHHHHHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH--heecHHHHHHH
Confidence 56777778888899999999999988888876 447889999999999999999999999888877 56788899999
Q ss_pred HHhhccCChhHHHHHHHHHHH
Q 000310 386 AERLRDKSVLVKRYTMERLAD 406 (1680)
Q Consensus 386 aeR~RDKK~~VR~eAm~~La~ 406 (1680)
.+=+.|..+.||...-+.|+.
T Consensus 452 l~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 452 LESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHHHhcCHHHHHHHHHHHHh
Confidence 999999999999987777654
No 71
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=89.12 E-value=3.5 Score=51.50 Aligned_cols=173 Identities=13% Similarity=0.113 Sum_probs=117.4
Q ss_pred HHHh-hcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHH
Q 000310 251 DVYR-CSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKS 329 (1680)
Q Consensus 251 eL~~-~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~ 329 (1680)
.+|. +--++|..|+--|-. +++...|.+|.+.|++|+..+...|...---+-..+|.-..|-...|=....+.|-.
T Consensus 321 svWeq~f~~iL~~l~EvL~d---~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~ 397 (516)
T KOG2956|consen 321 SVWEQHFAEILLLLLEVLSD---SEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLT 397 (516)
T ss_pred hHHHHHHHHHHHHHHHHHcc---chhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 3564 344555555433322 478999999999999999987766666666677899999999999998889999988
Q ss_pred HHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhh----hhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHH
Q 000310 330 CLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVAC----HALNSIPVETVKLVAERLRDKSVLVKRYTMERLA 405 (1680)
Q Consensus 330 iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~----~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La 405 (1680)
+|.+|.-. .-+.-++.+++-.|+..=.++++....+.. ..|..+=.++.=++.+=.---...||+.|+=+|-
T Consensus 398 ~las~~P~----~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLV 473 (516)
T KOG2956|consen 398 TLASHLPL----QCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLV 473 (516)
T ss_pred HHHhhCch----hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHH
Confidence 88876421 345567777777999988888877654422 2233222233334444444455689999999999
Q ss_pred HHHHHhhhhccCCCcchhccccchHHHhhh
Q 000310 406 DIFRGCCLRNFNGSINQNEFEWIPGKILRC 435 (1680)
Q Consensus 406 ~LY~~~~~~~~~g~~~~~~~~wIPs~IL~~ 435 (1680)
.+|+..=- ..-...+...++.-+++
T Consensus 474 amv~~vG~-----~~mePhL~~Lt~sk~~L 498 (516)
T KOG2956|consen 474 AMVNRVGM-----EEMEPHLEQLTSSKLNL 498 (516)
T ss_pred HHHHHHhH-----HhhhhHhhhccHHHHHH
Confidence 99997410 11224455666655544
No 72
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=88.84 E-value=16 Score=47.23 Aligned_cols=129 Identities=19% Similarity=0.173 Sum_probs=86.9
Q ss_pred Hhhcchhhhhhhhhhc----ccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhH
Q 000310 253 YRCSPQILSGVVPYLT----GELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVK 328 (1680)
Q Consensus 253 ~~~~P~lL~~ViP~Le----~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~ 328 (1680)
-.+.|.++...+|.+. ....+++...|..|=++||.+..... .+....-++..-+.....+-.++||..+-++..
T Consensus 361 ~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p-~l~~~d~~li~~LF~sL~~~~~evr~sIqeALs 439 (501)
T PF13001_consen 361 KLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAP-SLFSKDLSLIEFLFDSLEDESPEVRVSIQEALS 439 (501)
T ss_pred HHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCc-ccccccHHHHHHHHHHhhCcchHHHHHHHHHHH
Confidence 3566777777888884 34667899999999999999887644 334344555566667778889999999999988
Q ss_pred HHHhcCCCCCC-----hHHHHH-HHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHH
Q 000310 329 SCLLTDPSRAD-----APQILT-ALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKL 384 (1680)
Q Consensus 329 ~iL~~~p~~~~-----~~eii~-~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~ 384 (1680)
.++.+-+.... ...... .+.....+..-.+|.+||+-.. +|..+++++...+..
T Consensus 440 sl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an--~~fpf~d~~aR~i~i 499 (501)
T PF13001_consen 440 SLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYAN--ACFPFSDVPARYICI 499 (501)
T ss_pred HHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHHHH--HhCCccchHHHHHHh
Confidence 87765332111 111122 2223345667779999888763 467777777665543
No 73
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=88.63 E-value=17 Score=48.77 Aligned_cols=177 Identities=20% Similarity=0.198 Sum_probs=98.5
Q ss_pred cccHHHHHHHHhhccccchHhHHHHHHHhhcchhhhhh-cccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchH
Q 000310 644 GGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLA-ATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSL 722 (1680)
Q Consensus 644 k~~v~~Li~lL~~~~~~~~~~aLkiLak~~k~~~e~~~-~~~s~l~~~L~~lal~GtpkqAKyAVr~Laa~~~~~~~~~~ 722 (1680)
++.+.-|+++|..++....-.++..|.+.+-+ .++-. -....+.+.|.++-..++...-.-|.++|..++-+.+....
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~ 367 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQ 367 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 45567889998877665555566666666532 22211 12446788899999888888888999999988876643210
Q ss_pred ---HHHHHHHHHhhhhcCCCchHHHHHHHHHhhc--ccccccchHHHHHHHHHhhhccccccCCCCCCCC-------CCc
Q 000310 723 ---SVLYKRLVDMLEEKTHLPAVLQSLGCIAQTA--MPVFETRESEIEEFIKSKILRCSNKIRNDTKACW-------DDR 790 (1680)
Q Consensus 723 ---~~L~~~L~~~L~~~~~l~t~L~sL~~Iaq~a--P~vfe~~~~eI~~fiik~ILl~~~~~~~~~~~~W-------~d~ 790 (1680)
.-++..|+..|.........+..|..|+... ...|.. ++.+.+|++-++..+.... ..+.-| ...
T Consensus 368 mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~--TdcIp~L~~~Ll~~~~~~v-~~eliaL~iNLa~~~r 444 (708)
T PF05804_consen 368 MVSLGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAY--TDCIPQLMQMLLENSEEEV-QLELIALLINLALNKR 444 (708)
T ss_pred HHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhh--cchHHHHHHHHHhCCCccc-cHHHHHHHHHHhcCHH
Confidence 1133445554543322223455566665542 344532 2456777777665432211 111111 000
Q ss_pred hhhHHHHHHHHHHHHHhhcCCCccccccchHHHHHHHHHhh
Q 000310 791 SELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSML 831 (1680)
Q Consensus 791 se~~~aKi~aLK~Lvn~ll~~~~~~~~~~i~~ll~lL~~il 831 (1680)
.-...+.--+|+.|+.+.....+ ..+++++++|-
T Consensus 445 naqlm~~g~gL~~L~~ra~~~~D-------~lLlKlIRNiS 478 (708)
T PF05804_consen 445 NAQLMCEGNGLQSLMKRALKTRD-------PLLLKLIRNIS 478 (708)
T ss_pred HHHHHHhcCcHHHHHHHHHhccc-------HHHHHHHHHHH
Confidence 11111133457777777655443 45788998874
No 74
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=88.53 E-value=1.1 Score=45.33 Aligned_cols=84 Identities=21% Similarity=0.205 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCC--CChHHHHHHHHhhhCCChh
Q 000310 279 RLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR--ADAPQILTALCDRLLDFDE 356 (1680)
Q Consensus 279 Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~--~~~~eii~~L~~rL~D~DE 356 (1680)
|..+.-.|+.+--+-+..+....+.+-..-|.-|.|.++.||....++..+|....... .--.+|..+|.+.+.|+|+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~ 82 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDE 82 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 44444455544332233456666888888899999999999999999999987654321 1135899999999999999
Q ss_pred HHHHHH
Q 000310 357 NVRKQV 362 (1680)
Q Consensus 357 kVR~aa 362 (1680)
.||.+|
T Consensus 83 ~Vr~~a 88 (97)
T PF12755_consen 83 NVRSAA 88 (97)
T ss_pred hHHHHH
Confidence 999985
No 75
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=87.94 E-value=0.46 Score=42.14 Aligned_cols=52 Identities=15% Similarity=0.109 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHhhhhhcC---CCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000310 356 ENVRKQVVAVICDVACHALN---SIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1680)
Q Consensus 356 EkVR~aaV~ai~~la~~~l~---~V~~elL~~LaeR~RDKK~~VR~eAm~~La~L 407 (1680)
+.||.+|+.+++.++..... ..-.+++..|...++|-...||..|...|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 47999999999886643322 23346788999999999999999999999875
No 76
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.28 E-value=3.5 Score=53.18 Aligned_cols=111 Identities=16% Similarity=0.133 Sum_probs=83.0
Q ss_pred hhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCC
Q 000310 297 NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS 376 (1680)
Q Consensus 297 ~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~ 376 (1680)
+...-..+|.....=++|.++.||...++..-. +.+ ..-....+.+-..+-+-|.++.||.+||+.|.-++...+-.
T Consensus 192 ~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~--L~e-g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~ 268 (823)
T KOG2259|consen 192 LTHDREHAARGLIYLEHDQDFRVRTHAVEGLLA--LSE-GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAP 268 (823)
T ss_pred ccccHHHHHHHHHHHhcCCCcchHHHHHHHHHh--hcc-cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCc
Confidence 444456788887777899999999998887533 122 22233456677788899999999999999997777655322
Q ss_pred C---------CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000310 377 I---------PVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1680)
Q Consensus 377 V---------~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~ 410 (1680)
. -+..+..+.+=+||..+.||.+|.+.||.+=+.
T Consensus 269 ~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~v 311 (823)
T KOG2259|consen 269 LERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQV 311 (823)
T ss_pred ccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHh
Confidence 1 123577899999999999999999999987665
No 77
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=86.98 E-value=4.1 Score=51.24 Aligned_cols=54 Identities=20% Similarity=0.097 Sum_probs=25.4
Q ss_pred HHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 000310 346 ALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLAD 406 (1680)
Q Consensus 346 ~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~ 406 (1680)
.|..-|.|.|..||.+||.+++.+-.. +.+..|..-+.|..+.||..|+.+|+.
T Consensus 151 ~L~~~L~d~d~~Vra~A~raLG~l~~~-------~a~~~L~~al~d~~~~VR~aA~~al~~ 204 (410)
T TIGR02270 151 ALEAALTHEDALVRAAALRALGELPRR-------LSESTLRLYLRDSDPEVRFAALEAGLL 204 (410)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhccc-------cchHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 333444466666666655555543211 111112233555556666666655533
No 78
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=86.89 E-value=0.8 Score=39.18 Aligned_cols=39 Identities=28% Similarity=0.428 Sum_probs=29.2
Q ss_pred hHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHH
Q 000310 327 VKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAV 365 (1680)
Q Consensus 327 ~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~a 365 (1680)
...++...|.....+.+.+.+..||.|++..||.+||..
T Consensus 3 l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 3 LSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 345556666655556888888889999999999888765
No 79
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=86.78 E-value=7.5 Score=52.61 Aligned_cols=150 Identities=16% Similarity=0.279 Sum_probs=105.0
Q ss_pred hhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCh----------------------------------h-----
Q 000310 258 QILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSAN----------------------------------N----- 298 (1680)
Q Consensus 258 ~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~----------------------------------a----- 298 (1680)
+++..+-|.++.++.+.+=..|..|++-|...+..++... +
T Consensus 249 di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~ 328 (815)
T KOG1820|consen 249 DILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRP 328 (815)
T ss_pred hhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcch
Confidence 6788899999999999999999999999999998765111 1
Q ss_pred --hhc-HHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhh-hhc
Q 000310 299 --EQF-HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVAC-HAL 374 (1680)
Q Consensus 299 --~~y-~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~-~~l 374 (1680)
..| ...+..+|.|+-|+-+.+|-..+.++-.++.+.+ ...+.+++..-+-+-...+|...-..+...-. ...
T Consensus 329 ~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~----l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 329 LFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP----LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred hhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence 111 4456677888888888888888888877776544 23566677777777777777764333322111 111
Q ss_pred CCCCH----HHHHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 000310 375 NSIPV----ETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1680)
Q Consensus 375 ~~V~~----elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~ 411 (1680)
..++. .+...++-.+.|+...||..|.+.++.+++.+
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~ 445 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVH 445 (815)
T ss_pred cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHh
Confidence 22322 34457777888888888888888888888865
No 80
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=86.00 E-value=1.2e+02 Score=39.37 Aligned_cols=51 Identities=29% Similarity=0.327 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccccchHhHHHHHHHhhc
Q 000310 624 FMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGG 674 (1680)
Q Consensus 624 ~~~~a~eLL~~IS~~~P~lFk~~v~~Li~lL~~~~~~~~~~aLkiLak~~k 674 (1680)
..-+|+++|+.+|..+|+.-..|-.++-.++.+.|-.+..-|+-+|-+.|.
T Consensus 319 ~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt 369 (898)
T COG5240 319 LRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGT 369 (898)
T ss_pred HHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCc
Confidence 345789999999999999999888888888888877666666777766663
No 81
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=85.07 E-value=1.1e+02 Score=40.21 Aligned_cols=143 Identities=17% Similarity=0.111 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhh-------hhhHHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHhh-cchhhhhhhhhhcccccCCC
Q 000310 204 TARRLAMNVIEQCA-------GKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRC-SPQILSGVVPYLTGELLTDQ 275 (1680)
Q Consensus 204 ~a~~lA~~v~~~~~-------dkL~~~I~qyf~~il~~d~~~~~~~~~~h~Li~eL~~~-~P~lL~~ViP~Le~EL~sed 275 (1680)
+.+.|+...|.... +.+.+++.+.+.+.....+ ..+..-.|..|-.. .|..+....|+++.. ..-.
T Consensus 420 ~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~~~LkaLGN~g~~~~i~~l~~~l~~~-~~~~ 493 (574)
T smart00638 420 AYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGD-----EEEIQLYLKALGNAGHPSSIKVLEPYLEGA-EPLS 493 (574)
T ss_pred HHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCC-----chheeeHHHhhhccCChhHHHHHHHhcCCC-CCCC
Confidence 33455665664432 3455555555555442211 11122233333322 577777777777632 2235
Q ss_pred hHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCCh
Q 000310 276 LDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFD 355 (1680)
Q Consensus 276 ~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~D 355 (1680)
..+|..|+..|.++-... -....+-+|.-|+.+- ..++||++.+-.+ +.++|+... +-......-.|++
T Consensus 494 ~~iR~~Av~Alr~~a~~~---p~~v~~~l~~i~~n~~--e~~EvRiaA~~~l---m~t~P~~~~---l~~ia~~l~~E~~ 562 (574)
T smart00638 494 TFIRLAAILALRNLAKRD---PRKVQEVLLPIYLNRA--EPPEVRMAAVLVL---METKPSVAL---LQRIAELLNKEPN 562 (574)
T ss_pred HHHHHHHHHHHHHHHHhC---chHHHHHHHHHHcCCC--CChHHHHHHHHHH---HhcCCCHHH---HHHHHHHHhhcCc
Confidence 679999999999775321 1244556777776664 4578999877664 456786432 2222233346888
Q ss_pred hHHHHHHH
Q 000310 356 ENVRKQVV 363 (1680)
Q Consensus 356 EkVR~aaV 363 (1680)
..|+-.+.
T Consensus 563 ~QV~sfv~ 570 (574)
T smart00638 563 LQVASFVY 570 (574)
T ss_pred HHHHHHhH
Confidence 88887643
No 82
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=84.33 E-value=11 Score=47.58 Aligned_cols=135 Identities=15% Similarity=0.018 Sum_probs=90.2
Q ss_pred hHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHH
Q 000310 244 DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSV 323 (1680)
Q Consensus 244 ~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ 323 (1680)
.+| |--|-..-|..+...++.|.. .++..+|..|+..++ +. ..+..+...+....|..+.||.++
T Consensus 42 ~Ah--LdgL~~~G~~a~~~L~~aL~~---d~~~ev~~~aa~al~---~~-------~~~~~~~~L~~~L~d~~~~vr~aa 106 (410)
T TIGR02270 42 LAH--VDGLVLAGKAATELLVSALAE---ADEPGRVACAALALL---AQ-------EDALDLRSVLAVLQAGPEGLCAGI 106 (410)
T ss_pred HHH--HHHHHHhhHhHHHHHHHHHhh---CCChhHHHHHHHHHh---cc-------CChHHHHHHHHHhcCCCHHHHHHH
Confidence 455 555555556665555555532 466777776665553 11 112358888999999988899999
Q ss_pred HHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHH
Q 000310 324 LEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMER 403 (1680)
Q Consensus 324 ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~ 403 (1680)
+++.+.|= -.+....|...|-|.|..||.+++.+... +.. -+.+.+ ..-+.|..+.||..|+..
T Consensus 107 a~ALg~i~--------~~~a~~~L~~~L~~~~p~vR~aal~al~~---r~~--~~~~~L---~~~L~d~d~~Vra~A~ra 170 (410)
T TIGR02270 107 QAALGWLG--------GRQAEPWLEPLLAASEPPGRAIGLAALGA---HRH--DPGPAL---EAALTHEDALVRAAALRA 170 (410)
T ss_pred HHHHhcCC--------chHHHHHHHHHhcCCChHHHHHHHHHHHh---hcc--ChHHHH---HHHhcCCCHHHHHHHHHH
Confidence 99987421 13577788888899999999988755433 221 134433 344569999999999999
Q ss_pred HHHHHH
Q 000310 404 LADIFR 409 (1680)
Q Consensus 404 La~LY~ 409 (1680)
||.+=.
T Consensus 171 LG~l~~ 176 (410)
T TIGR02270 171 LGELPR 176 (410)
T ss_pred HHhhcc
Confidence 988644
No 83
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=83.78 E-value=34 Score=44.92 Aligned_cols=144 Identities=13% Similarity=0.071 Sum_probs=90.3
Q ss_pred hhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCC-------ChhhhcHHHHHHHHhhh-cCCChhHHHHHHH
Q 000310 254 RCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGS-------ANNEQFHSVFSEFLKRL-TDRIVAVRMSVLE 325 (1680)
Q Consensus 254 ~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s-------~~a~~y~~~w~~fL~R~-~D~s~~VR~~~ve 325 (1680)
.-.|++|..+.+.++..-.-.+..+|.-|+-.+|.|.-.--. .....+-..+...|+.. .+.+...++.+++
T Consensus 389 ~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk 468 (574)
T smart00638 389 YPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLK 468 (574)
T ss_pred cCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHH
Confidence 446677777777777766667888999999999988742111 11233333444444333 3456677888888
Q ss_pred HhHHHHhcCCCCCChHHHHHHHHhhhC---CChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHH
Q 000310 326 HVKSCLLTDPSRADAPQILTALCDRLL---DFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTME 402 (1680)
Q Consensus 326 ~~~~iL~~~p~~~~~~eii~~L~~rL~---D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~ 402 (1680)
++++ +-+| ..+..|...+. .....||.+||.++..++...+..+-.-++..+.. ++..+.||..|..
T Consensus 469 aLGN--~g~~------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n--~~e~~EvRiaA~~ 538 (574)
T smart00638 469 ALGN--AGHP------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLN--RAEPPEVRMAAVL 538 (574)
T ss_pred hhhc--cCCh------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcC--CCCChHHHHHHHH
Confidence 8875 2223 34555555544 45678999999999887776655544444433322 2244789998887
Q ss_pred HHHHH
Q 000310 403 RLADI 407 (1680)
Q Consensus 403 ~La~L 407 (1680)
.|.+-
T Consensus 539 ~lm~t 543 (574)
T smart00638 539 VLMET 543 (574)
T ss_pred HHHhc
Confidence 77654
No 84
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.77 E-value=60 Score=43.22 Aligned_cols=103 Identities=19% Similarity=0.302 Sum_probs=73.7
Q ss_pred chhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHH-HHHhh---hcCCChhHHHHHHHHhHHHHh
Q 000310 257 PQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFS-EFLKR---LTDRIVAVRMSVLEHVKSCLL 332 (1680)
Q Consensus 257 P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~-~fL~R---~~D~s~~VR~~~ve~~~~iL~ 332 (1680)
-+++..|++. |.+.|.++|.++..+.-++.+... +-+- -..++ ++.+- -.|..-.-|...++.+..|-.
T Consensus 316 ~~l~mDvLrv----Lss~dldvr~Ktldi~ldLvssrN--vedi-v~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav 388 (948)
T KOG1058|consen 316 QGLIMDVLRV----LSSPDLDVRSKTLDIALDLVSSRN--VEDI-VQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAV 388 (948)
T ss_pred HHHHHHHHHH----cCcccccHHHHHHHHHHhhhhhcc--HHHH-HHHHHHHHHhccccccccchHHHHHHHHHHHHHhh
Confidence 3445555555 678999999999999999998764 2110 01111 11111 245566779999999999998
Q ss_pred cCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHH
Q 000310 333 TDPSRADAPQILTALCDRLLDFDENVRKQVVAVICD 368 (1680)
Q Consensus 333 ~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~ 368 (1680)
+-|+. +..++..|.+-+-|+.+.--..++.-|.+
T Consensus 389 ~Fp~~--aatvV~~ll~fisD~N~~aas~vl~FvrE 422 (948)
T KOG1058|consen 389 KFPEV--AATVVSLLLDFISDSNEAAASDVLMFVRE 422 (948)
T ss_pred cChHH--HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 88864 67899999999999999988777776655
No 85
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.49 E-value=16 Score=50.35 Aligned_cols=164 Identities=16% Similarity=0.184 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHH
Q 000310 204 TARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAV 283 (1680)
Q Consensus 204 ~a~~lA~~v~~~~~dkL~~~I~qyf~~il~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At 283 (1680)
..+..-+...+...|.+...|..+|.++... ++++ -.+.+|...+
T Consensus 264 e~Ll~~r~etqe~~d~i~~mi~~if~sVFVH---------RYRD--------------------------V~~~IRaiCi 308 (1048)
T KOG2011|consen 264 ESLLMLRKETQEQQDEIESMINDIFDSVFVH---------RYRD--------------------------VDPDIRAICI 308 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhheeee---------eccc--------------------------CchHHHHHHH
Confidence 5566667777777788888888888776542 2222 3567899999
Q ss_pred HHHHHhhcCCCCChhhhcHHHHH--HHHhh----hcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhh-----hC
Q 000310 284 GLVGDLFAVPGSANNEQFHSVFS--EFLKR----LTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDR-----LL 352 (1680)
Q Consensus 284 ~llG~mfs~~~s~~a~~y~~~w~--~fL~R----~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~r-----L~ 352 (1680)
+-||-- +..||+.|- .||+= ..|+...||..||+.+..+..+.-...-......-+..| ..
T Consensus 309 qeLgiW--------i~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadr 380 (1048)
T KOG2011|consen 309 QELGIW--------IKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADR 380 (1048)
T ss_pred HHHHHH--------HHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhh
Confidence 999954 456777665 44443 589999999999999999877632211223445555554 46
Q ss_pred CChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHH-HHHHhh
Q 000310 353 DFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLAD-IFRGCC 412 (1680)
Q Consensus 353 D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~-LY~~~~ 412 (1680)
|.+.-||....... +.......++.+-+..|...|=|-++.||+.|+..|-. ++..++
T Consensus 381 d~~~~Vrav~L~~~--~~~~~~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~~~~~a 439 (1048)
T KOG2011|consen 381 DRNVSVRAVGLVLC--LLLSSSGLLSDKDILIVYSLIYDSNRRVAVAAGEFLYKKLFERVA 439 (1048)
T ss_pred hcchhHHHHHHHHH--HHHhcccccChhHHHHHHHHHhccCcchHHHHHHHHHHHhhcccc
Confidence 77777776644332 34455667888888899999999999999999988755 444443
No 86
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.20 E-value=1.9e+02 Score=38.69 Aligned_cols=112 Identities=18% Similarity=0.199 Sum_probs=79.9
Q ss_pred cchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCC
Q 000310 256 SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDP 335 (1680)
Q Consensus 256 ~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p 335 (1680)
.-+++.-.+-++.-.|.+.++-.=-.|...|.. |..| ++++ ++...-+.=.+-.-|-||...|-..-.+....|
T Consensus 103 ~tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS~-fvTp--dLAR---DLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYP 176 (877)
T KOG1059|consen 103 DTDVLMLTTNLLRKDLNSSNVYEVGLALSGLSC-IVTP--DLAR---DLADDVFTLLNSSKPYVRKKAILLLYKVFLKYP 176 (877)
T ss_pred CccHHHHHHHHHHHHhccCccchhhheeccccc-ccCc--hhhH---HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhh
Confidence 333444444566666777776666666666663 4444 3554 344444444555789999999998888888777
Q ss_pred CCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcC
Q 000310 336 SRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN 375 (1680)
Q Consensus 336 ~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~ 375 (1680)
+. .+.-.+-|.++|-|+|..|--|||.+||++|..++.
T Consensus 177 eA--lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPk 214 (877)
T KOG1059|consen 177 EA--LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQ 214 (877)
T ss_pred Hh--HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCc
Confidence 52 356788999999999999999999999999998865
No 87
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=82.06 E-value=9.6 Score=46.08 Aligned_cols=135 Identities=21% Similarity=0.294 Sum_probs=93.9
Q ss_pred HHHHHhh-cchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCC-----------
Q 000310 249 IYDVYRC-SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRI----------- 316 (1680)
Q Consensus 249 i~eL~~~-~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s----------- 316 (1680)
++.|-.+ .|..+-..++.|+. .++.-+|..|...||.+-.... +...+.-..|..
T Consensus 95 ~~aLg~~~~~~a~~~li~~l~~---d~~~~vR~~aa~aL~~~~~~~a----------~~~l~~~l~~~~~~~a~~~~~~~ 161 (335)
T COG1413 95 ADALGELGDPEAVPPLVELLEN---DENEGVRAAAARALGKLGDERA----------LDPLLEALQDEDSGSAAAALDAA 161 (335)
T ss_pred HHHHHccCChhHHHHHHHHHHc---CCcHhHHHHHHHHHHhcCchhh----------hHHHHHHhccchhhhhhhhccch
Confidence 3344444 25555555555554 6899999999999998876532 222222223322
Q ss_pred -hhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChh
Q 000310 317 -VAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVL 395 (1680)
Q Consensus 317 -~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~ 395 (1680)
-.+|...+..... ... ...+..+...+.|.+..||.++..+++.+.... ..+...+...+.|-.+.
T Consensus 162 ~~~~r~~a~~~l~~----~~~----~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-----~~~~~~l~~~~~~~~~~ 228 (335)
T COG1413 162 LLDVRAAAAEALGE----LGD----PEAIPLLIELLEDEDADVRRAAASALGQLGSEN-----VEAADLLVKALSDESLE 228 (335)
T ss_pred HHHHHHHHHHHHHH----cCC----hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-----hhHHHHHHHHhcCCCHH
Confidence 1567776666543 111 357778899999999999999999998877665 44557778899999999
Q ss_pred HHHHHHHHHHHHHH
Q 000310 396 VKRYTMERLADIFR 409 (1680)
Q Consensus 396 VR~eAm~~La~LY~ 409 (1680)
||..++..|+.+=.
T Consensus 229 vr~~~~~~l~~~~~ 242 (335)
T COG1413 229 VRKAALLALGEIGD 242 (335)
T ss_pred HHHHHHHHhcccCc
Confidence 99999999987544
No 88
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=81.85 E-value=90 Score=40.78 Aligned_cols=302 Identities=16% Similarity=0.149 Sum_probs=168.9
Q ss_pred HHHHHHhcch--hhhcCCCcchHHHHHHH---HHHHhhhcCCC--------CCC------ChhHHHHHHHHHHH-----h
Q 000310 53 QPFLNAIVQP--VLLKHQDKDVKLLVATC---ICEITRITAPE--------APY------SDDVLKDIFQLIVG-----T 108 (1680)
Q Consensus 53 ~~~~~~Lv~~--~LL~HkD~~Vra~vAcC---LadIlRI~APd--------APy------td~qLkdIF~l~i~-----q 108 (1680)
+|+...+|+. ++|+|+-++||.-.|-- |+-||.-|.-. .-| ..+.|--|.+.+.. -
T Consensus 599 kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~ 678 (975)
T COG5181 599 KPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHR 678 (975)
T ss_pred CcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhc
Confidence 3666677766 78999999999875543 34444422221 111 11334444444433 2
Q ss_pred ccCCCCCCCCChhhHHHHHHHH------HhhhhhhhcccCCch-HHHHHHHHHHHHhhc--CCChhhHHHHHHHHHHHHh
Q 000310 109 FSGLKDTGGPSFGRRVVILETL------AKYRSCVVMLDLECD-ELVNEMYSTFFAVAS--DDHPESVLSSMQTIMIVLL 179 (1680)
Q Consensus 109 f~~L~d~~~p~f~q~~~LLe~L------A~vks~vl~~DL~~~-~Li~~lF~~ff~~v~--~~~~~~V~~~m~~IL~~vI 179 (1680)
|..+.-|-+.-.+.-.-||.+= ..+...-.+|+...+ -=..+-.+++|.++- ..+.+.+......-+.-|-
T Consensus 679 ~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is 758 (975)
T COG5181 679 FRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCIS 758 (975)
T ss_pred ccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHH
Confidence 4455555555555555555442 233333355665422 224455566776654 2355555554444443322
Q ss_pred cccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhhhhHHHHHHHHHH---hhcCCCCC----CCCchhHHHHH-HH
Q 000310 180 EESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVS---SMSGDSRP----GHSHIDYHEVI-YD 251 (1680)
Q Consensus 180 ~Ese~vp~~vLd~IL~~l~~~k~~~a~~lA~~v~~~~~dkL~~~I~qyf~~---il~~d~~~----~~~~~~~h~Li-~e 251 (1680)
.. -=|++||+++|+.|.-+.. -.++|..-+=.+-.-.|.-|+= ++.+=..+ .+..+++.-.. .-
T Consensus 759 ~a--iGPqdvL~~LlnnLkvqeR------q~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFey 830 (975)
T COG5181 759 RA--IGPQDVLDILLNNLKVQER------QQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEY 830 (975)
T ss_pred hh--cCHHHHHHHHHhcchHHHH------HhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHH
Confidence 21 3489999999999852210 1112222211111222222331 11110111 11233444333 34
Q ss_pred HHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCC-CCChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHH
Q 000310 252 VYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP-GSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSC 330 (1680)
Q Consensus 252 L~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~-~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~i 330 (1680)
+.+.+-+.+.++.|.||+-|...|.-.|+.|..++-.+--.+ |.--....=.+.+-..--.-|.+|.|=..+.++.-.+
T Consensus 831 ig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~ 910 (975)
T COG5181 831 IGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESF 910 (975)
T ss_pred HHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHH
Confidence 667888999999999999999999999999999999886553 2211222223333333456678999888777766553
Q ss_pred HhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHH
Q 000310 331 LLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVI 366 (1680)
Q Consensus 331 L~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai 366 (1680)
-..-. ..-+.+++..-|.-|--+||.+-+.++
T Consensus 911 ~~~lg----~g~~m~Yv~qGLFHPs~~VRk~ywtvy 942 (975)
T COG5181 911 ATVLG----SGAMMKYVQQGLFHPSSTVRKRYWTVY 942 (975)
T ss_pred HHHhc----cHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 32211 235889999999999999999865555
No 89
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=81.31 E-value=1.5e+02 Score=36.95 Aligned_cols=320 Identities=13% Similarity=0.082 Sum_probs=176.7
Q ss_pred cCCCcchHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHhcc----C---CCCC-CCCChhhHHHHHHHHHhhhhhh
Q 000310 66 KHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFS----G---LKDT-GGPSFGRRVVILETLAKYRSCV 137 (1680)
Q Consensus 66 ~HkD~~Vra~vAcCLadIlRI~APdAPytd~qLkdIF~l~i~qf~----~---L~d~-~~p~f~q~~~LLe~LA~vks~v 137 (1680)
...|++=|.=+-..|+.+||.|-- .|. ...+.+=+.+|+..+. . =++| +...+.|..-+|-.+-.--.++
T Consensus 3 a~~~~~~r~daY~~l~~~l~~~~~-~~~-~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~ 80 (372)
T PF12231_consen 3 AGSDRSSRLDAYMTLNNALKAYDN-LPD-RQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIV 80 (372)
T ss_pred CcCCcHHHHHHHHHHHHHHHHhcC-CCc-HHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHH
Confidence 345555555555669999998842 232 2334444444444332 1 1233 3445666677776665444444
Q ss_pred hcccCCchHHHHHHHHHHHHhh-cCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHhc--C--CCcH----HHHHH
Q 000310 138 VMLDLECDELVNEMYSTFFAVA-SDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALG--R--NKND----TARRL 208 (1680)
Q Consensus 138 l~~DL~~~~Li~~lF~~ff~~v-~~~~~~~V~~~m~~IL~~vI~Ese~vp~~vLd~IL~~l~--~--~k~~----~a~~l 208 (1680)
-.++ ++...-+........ .+..++.+...-..+|..-==....++.+....|+..+. . -.+. .+..+
T Consensus 81 ~~l~---~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i 157 (372)
T PF12231_consen 81 STLS---DDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNI 157 (372)
T ss_pred hhCC---hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHH
Confidence 2222 233333444444433 355677766665555554111122345555555554331 1 1121 66778
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhcCC-CCCCCCchhHHHHHHHHHhhcc-h-hhhh-hhhhhcccccCCChHHHHHHHH
Q 000310 209 AMNVIEQCAGKLEAGIKQFLVSSMSGD-SRPGHSHIDYHEVIYDVYRCSP-Q-ILSG-VVPYLTGELLTDQLDTRLKAVG 284 (1680)
Q Consensus 209 A~~v~~~~~dkL~~~I~qyf~~il~~d-~~~~~~~~~~h~Li~eL~~~~P-~-lL~~-ViP~Le~EL~sed~~~Rl~At~ 284 (1680)
=+.++..+.+.|...+..+|-.++.+- +.......++..+..++-.+.+ + .+.. |...+...+..+ .+-..-++
T Consensus 158 ~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~--~~~~~~~~ 235 (372)
T PF12231_consen 158 YKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG--KLIQLYCE 235 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc--cHHHHHHH
Confidence 889999999999999988876554321 0011112235666666554432 2 2222 333334444333 77788888
Q ss_pred HHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHH
Q 000310 285 LVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVA 364 (1680)
Q Consensus 285 llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ 364 (1680)
.+..|+..++. ...=|++|..++.=..+.- . . ......+.+.-...++..+|..||.+|..
T Consensus 236 ~L~~mi~~~~~--~~~a~~iW~~~i~LL~~~~-------~-------~---~w~~~n~wL~v~e~cFn~~d~~~k~~A~~ 296 (372)
T PF12231_consen 236 RLKEMIKSKDE--YKLAMQIWSVVILLLGSSR-------L-------D---SWEHLNEWLKVPEKCFNSSDPQVKIQAFK 296 (372)
T ss_pred HHHHHHhCcCC--cchHHHHHHHHHHHhCCch-------h-------h---ccHhHhHHHHHHHHHhcCCCHHHHHHHHH
Confidence 89999988531 2334678987766543321 1 1 11224578888889999999999999998
Q ss_pred HHHHhhhhh-cCC-CCHHHHH--------HHHHhhccCCh-hHHHHHHHHHHHHHHHh
Q 000310 365 VICDVACHA-LNS-IPVETVK--------LVAERLRDKSV-LVKRYTMERLADIFRGC 411 (1680)
Q Consensus 365 ai~~la~~~-l~~-V~~elL~--------~LaeR~RDKK~-~VR~eAm~~La~LY~~~ 411 (1680)
+=.-+.+.. .+. .....++ .+..+.-+|.. .||..+|..++.++-..
T Consensus 297 aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~~ 354 (372)
T PF12231_consen 297 AWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYYA 354 (372)
T ss_pred HHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchHHHH
Confidence 877766622 111 1223332 23233333333 89999999999876443
No 90
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=79.84 E-value=8.5 Score=51.55 Aligned_cols=149 Identities=18% Similarity=0.214 Sum_probs=115.7
Q ss_pred hhhhhhhcccccCCChHHHHHHHHHHHHhhcC-CCCChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCC--
Q 000310 261 SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAV-PGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR-- 337 (1680)
Q Consensus 261 ~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~-~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~-- 337 (1680)
..+.|-|.....+..-..|-.=...|...++. |..-+.-..|.++--.|.-..=.++.||+.-....+..+.-++..
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 34566666666667777777777888888874 223345678899999999999999999999999999988877642
Q ss_pred CChHHHHHHHHhhhCCCh---hHHHHHHHHHHHHhhhhh----cCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 000310 338 ADAPQILTALCDRLLDFD---ENVRKQVVAVICDVACHA----LNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFR 409 (1680)
Q Consensus 338 ~~~~eii~~L~~rL~D~D---EkVR~aaV~ai~~la~~~----l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~ 409 (1680)
.....+++.+..--.|.| --||..|.+.+..+.... +...-.++++.+.-=+-|||..||++|+.+=..-|-
T Consensus 946 ~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~ 1024 (1030)
T KOG1967|consen 946 EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWYM 1024 (1030)
T ss_pred HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhh
Confidence 334578888888878888 679999999998887633 334466799999999999999999999987655443
No 91
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=77.97 E-value=1.2e+02 Score=37.25 Aligned_cols=203 Identities=13% Similarity=0.115 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhccc-ccccHHHHHHHHHHhcCCCcH--HHH-HHHHHHH--------H
Q 000310 147 LVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEES-EDIQEDLLVILLSALGRNKND--TAR-RLAMNVI--------E 214 (1680)
Q Consensus 147 Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Es-e~vp~~vLd~IL~~l~~~k~~--~a~-~lA~~v~--------~ 214 (1680)
+-..+-+.|..++..+..+.....|...|..-+.-. ..+|..+++.+-.-+...+.. -+| .....++ .
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~ 98 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSL 98 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHH
Confidence 444555555555556666666666666666655554 789999999998877655442 222 2222222 2
Q ss_pred HhhhhhHHHHHHHHHHhhcCCCC-CCCCch-hHHHHHH--------------HHH----hhcchhhhhhhhhhcccccCC
Q 000310 215 QCAGKLEAGIKQFLVSSMSGDSR-PGHSHI-DYHEVIY--------------DVY----RCSPQILSGVVPYLTGELLTD 274 (1680)
Q Consensus 215 ~~~dkL~~~I~qyf~~il~~d~~-~~~~~~-~~h~Li~--------------eL~----~~~P~lL~~ViP~Le~EL~se 274 (1680)
.....+-+.+-+++.++...... .....+ -++-++. ..| .--|.+|.+ |-+...|.++
T Consensus 99 ~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~--~kvyskl~~~ 176 (339)
T PF12074_consen 99 KFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLS--EKVYSKLASE 176 (339)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcC--HHHHhccCCH
Confidence 22333445555556555543211 111111 2222222 011 112333333 3444443222
Q ss_pred ChHHHHHHHHHHHHhhcCCCCChhhh-cHHHHHHHHhhhcCC--ChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhh
Q 000310 275 QLDTRLKAVGLVGDLFAVPGSANNEQ-FHSVFSEFLKRLTDR--IVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRL 351 (1680)
Q Consensus 275 d~~~Rl~At~llG~mfs~~~s~~a~~-y~~~w~~fL~R~~D~--s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL 351 (1680)
+ .=.-+++.+-.++.......... .....++|+-=.... ++.||...++....++..+|.. ....|+.+|...|
T Consensus 177 ~--d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~-l~~~li~~l~~~l 253 (339)
T PF12074_consen 177 E--DLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL-LSKSLISGLWKWL 253 (339)
T ss_pred h--HHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHH
Confidence 2 22344555555555432221111 133444666666666 6777777777777777766642 2345555555555
Q ss_pred CCC
Q 000310 352 LDF 354 (1680)
Q Consensus 352 ~D~ 354 (1680)
.+.
T Consensus 254 ~~~ 256 (339)
T PF12074_consen 254 SSS 256 (339)
T ss_pred Hhc
Confidence 433
No 92
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=77.75 E-value=31 Score=46.69 Aligned_cols=132 Identities=11% Similarity=0.066 Sum_probs=96.5
Q ss_pred CChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCC
Q 000310 274 DQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLD 353 (1680)
Q Consensus 274 ed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D 353 (1680)
--.-+|..++-|+|+|.-+++ .+++.|-+++..=|....| +.||--+|-+..+|-... ..-..--+..+..+|.|
T Consensus 943 ~~~~vra~~vvTlakmcLah~-~LaKr~~P~lvkeLe~~~~--~aiRnNiV~am~D~C~~Y--Tam~d~YiP~I~~~L~D 1017 (1529)
T KOG0413|consen 943 FSDKVRAVGVVTLAKMCLAHD-RLAKRLMPMLVKELEYNTA--HAIRNNIVLAMGDICSSY--TAMTDRYIPMIAASLCD 1017 (1529)
T ss_pred cchHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhhhH--HHHhcceeeeehhhHHHH--HHHHHHhhHHHHHHhcC
Confidence 345689999999999998876 7899888888877776544 677866555555543321 11112346788899999
Q ss_pred ChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000310 354 FDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1680)
Q Consensus 354 ~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~ 410 (1680)
|++-||++++.-+..+-.+.+-.-..+++--+.--+-|-+..||..|=-.++.+...
T Consensus 1018 p~~iVRrqt~ilL~rLLq~~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1018 PSVIVRRQTIILLARLLQFGIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred chHHHHHHHHHHHHHHHhhhhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhh
Confidence 999999999999888877776666777665555666799999988777777666654
No 93
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=77.08 E-value=12 Score=51.65 Aligned_cols=137 Identities=20% Similarity=0.215 Sum_probs=99.7
Q ss_pred CchhHHHHHHHHH-----hhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCC
Q 000310 241 SHIDYHEVIYDVY-----RCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDR 315 (1680)
Q Consensus 241 ~~~~~h~Li~eL~-----~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~ 315 (1680)
..+.-.+++..+| ...| +.+-+|-|-.-+.+....+|..|.+.+|.||.. .....+--+.+.|+-=..|.
T Consensus 792 ~~~~s~~vf~s~~~~m~s~l~~--~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~---~~~e~m~~v~~~~~~ll~~~ 866 (1549)
T KOG0392|consen 792 EFLSSFEVFNSLAPLMHSFLHP--LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKS---ATRETMATVINGFLPLLGDL 866 (1549)
T ss_pred chhhhHHHHHHHHHhhhhhhhh--hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhccch
Confidence 3344455666666 3345 667788888889999999999999999999976 34566667777777777788
Q ss_pred ChhHHHHHHHHhHHHHhcCCCC---CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhh--------hcCCCCHHHH
Q 000310 316 IVAVRMSVLEHVKSCLLTDPSR---ADAPQILTALCDRLLDFDENVRKQVVAVICDVACH--------ALNSIPVETV 382 (1680)
Q Consensus 316 s~~VR~~~ve~~~~iL~~~p~~---~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~--------~l~~V~~elL 382 (1680)
+--+|.+-...+-.+|..-..+ .-..-++.-|..|+-|..|.||.+|-+++..+... .+..+|.+++
T Consensus 867 ~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl 944 (1549)
T KOG0392|consen 867 DKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELL 944 (1549)
T ss_pred hhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHH
Confidence 8888887776666666542111 11234778899999999999999999999887652 2345667766
No 94
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.24 E-value=70 Score=43.07 Aligned_cols=116 Identities=17% Similarity=0.311 Sum_probs=67.8
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhhhhcccCC--c-hHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhccccc-ccHH
Q 000310 113 KDTGGPSFGRRVVILETLAKYRSCVVMLDLE--C-DELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESED-IQED 188 (1680)
Q Consensus 113 ~d~~~p~f~q~~~LLe~LA~vks~vl~~DL~--~-~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~-vp~~ 188 (1680)
.+|++|-| ++|+.|+++-+ +.-.|+-. + ..+...||=.|-.+-+.| =.....+...||+.+++-+.. +|.+
T Consensus 603 KNPs~P~f--nHYLFEsi~~l--i~~t~~~~~~~vs~~e~aL~p~fq~Il~eD-I~EfiPYvfQlla~lve~~~~~ip~~ 677 (960)
T KOG1992|consen 603 KNPSNPQF--NHYLFESIGLL--IRKTCKANPSAVSSLEEALFPVFQTILSED-IQEFIPYVFQLLAVLVEHSSGTIPDS 677 (960)
T ss_pred cCCCCchh--HHHHHHHHHHH--HHHHhccCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCchh
Confidence 46677754 57899998753 23335543 1 346666664444443321 235667888999999998876 8887
Q ss_pred HHHHHHHHhcCC---Cc---HHHHHHHHHHHHHhhhhhH-----HHHHHHHHHhhc
Q 000310 189 LLVILLSALGRN---KN---DTARRLAMNVIEQCAGKLE-----AGIKQFLVSSMS 233 (1680)
Q Consensus 189 vLd~IL~~l~~~---k~---~~a~~lA~~v~~~~~dkL~-----~~I~qyf~~il~ 233 (1680)
...++.-.+.++ ++ .+.-+|-..++.+.+.... .+|-.+|.-++.
T Consensus 678 ~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLia 733 (960)
T KOG1992|consen 678 YSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIA 733 (960)
T ss_pred HHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhc
Confidence 665444333322 22 2555777777766654443 344456655554
No 95
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=76.11 E-value=3.5 Score=45.29 Aligned_cols=120 Identities=14% Similarity=0.199 Sum_probs=87.7
Q ss_pred HHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHHH
Q 000310 246 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 325 (1680)
Q Consensus 246 h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve 325 (1680)
-+++.++++..+..-..++-++-..+.+.....-..=+.+|+.|.... ......|.+...+|+.-+....+++-+..+.
T Consensus 39 ~~IL~~~fk~h~~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~-p~~vle~~~~l~~~ld~l~~lp~~~a~~ll~ 117 (158)
T PF14676_consen 39 IQILLELFKVHEMIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKA-PLTVLECSSKLKELLDYLSFLPGDVAIGLLR 117 (158)
T ss_dssp HHHHHHHHHH-GGGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH--HHHHS-S-HHHHGGGGGTTTS-HHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHC-hHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 467888888888888888888877777665543344578888887653 2456778888999999999999999999999
Q ss_pred HhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHH
Q 000310 326 HVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICD 368 (1680)
Q Consensus 326 ~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~ 368 (1680)
++-.++..+++ ....++--|++-+.--|..+|..||..+++
T Consensus 118 Al~PLi~~s~~--lrd~lilvLRKamf~r~~~~R~~Av~Gfl~ 158 (158)
T PF14676_consen 118 ALLPLIKFSPS--LRDSLILVLRKAMFSRELDARQMAVNGFLQ 158 (158)
T ss_dssp HHHHHHTT-HH--HHHHHHHHHHHHTT-SSHHHHHHHHHHHH-
T ss_pred HHHHHHhcCHH--HHHHHHHHHHHHHccccHHHHHHHHHHhcC
Confidence 99998887764 234678888888999999999999998864
No 96
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=76.07 E-value=3.4e+02 Score=38.04 Aligned_cols=225 Identities=16% Similarity=0.173 Sum_probs=121.0
Q ss_pred hcCCChhhHHHHHHHHHHHHhcccc-----cccHHHHHHHHHHhcCCCc---H-----HHHHHHHHHHHHhhhhhHHHHH
Q 000310 159 ASDDHPESVLSSMQTIMIVLLEESE-----DIQEDLLVILLSALGRNKN---D-----TARRLAMNVIEQCAGKLEAGIK 225 (1680)
Q Consensus 159 v~~~~~~~V~~~m~~IL~~vI~Ese-----~vp~~vLd~IL~~l~~~k~---~-----~a~~lA~~v~~~~~dkL~~~I~ 225 (1680)
.|.-.|..+......+...++--+- .+--..--.+.+.+++..+ + .+--+|.....+|--.+..+|.
T Consensus 456 ~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia 535 (1133)
T KOG1943|consen 456 ARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIA 535 (1133)
T ss_pred HhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHH
Confidence 3444455555555555555443210 1222223344445555321 1 3345667777788777878887
Q ss_pred HH-------HHHhhcCCCCCCCCchh--HHHHHHHHHhhcchhhh-hhhhhhcccccCCChHHHHHHHHHHHHhhcCCCC
Q 000310 226 QF-------LVSSMSGDSRPGHSHID--YHEVIYDVYRCSPQILS-GVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGS 295 (1680)
Q Consensus 226 qy-------f~~il~~d~~~~~~~~~--~h~Li~eL~~~~P~lL~-~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s 295 (1680)
+| |+..+..+=.-=+..++ +-.-+.+|....|..+. .|+|.|=....+.+...|--++-..|.+++.-.
T Consensus 536 ~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~- 614 (1133)
T KOG1943|consen 536 EFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALR- 614 (1133)
T ss_pred hhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhh-
Confidence 76 33333321000001111 22234458889999999 588888888899999999999998888886521
Q ss_pred ChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCCh--hHHHHHHHHHHHHhhhhh
Q 000310 296 ANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFD--ENVRKQVVAVICDVACHA 373 (1680)
Q Consensus 296 ~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~D--EkVR~aaV~ai~~la~~~ 373 (1680)
.-+|-+.. ..+=|++|... ++..++++-.+.- +..|.++++.|..+.-..
T Consensus 615 ---~l~~~~~~---------l~e~~i~~l~~----------------ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~ 666 (1133)
T KOG1943|consen 615 ---KLEPVIKG---------LDENRIAGLLS----------------IIPPICDRYFYRGQGTLMRQATLKFIEQLSLSK 666 (1133)
T ss_pred ---hhhhhhhh---------hHHHHhhhhhh----------------hccHHHHHHhccchHHHHHHHHHHHHHHhhhcc
Confidence 11111111 22233443322 2222333333333 555666666665544433
Q ss_pred cC----CCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhh
Q 000310 374 LN----SIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCL 413 (1680)
Q Consensus 374 l~----~V~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~ 413 (1680)
.. .+-......++.-+++-+ .+|..|...+++++..|+.
T Consensus 667 ~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~ 709 (1133)
T KOG1943|consen 667 DRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVK 709 (1133)
T ss_pred chhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHh
Confidence 32 122223344555555555 7899999999999998864
No 97
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=75.95 E-value=18 Score=43.75 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=22.0
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000310 381 TVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1680)
Q Consensus 381 lL~~LaeR~RDKK~~VR~eAm~~La~LY~~ 410 (1680)
.+..+.++++|....||..|...|+.+-..
T Consensus 181 ~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~ 210 (335)
T COG1413 181 AIPLLIELLEDEDADVRRAAASALGQLGSE 210 (335)
T ss_pred hhHHHHHHHhCchHHHHHHHHHHHHHhhcc
Confidence 345667777777778888888888877654
No 98
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=74.79 E-value=2.6e+02 Score=36.03 Aligned_cols=166 Identities=11% Similarity=0.164 Sum_probs=98.8
Q ss_pred CCCChhhHHHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHH
Q 000310 116 GGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLS 195 (1680)
Q Consensus 116 ~~p~f~q~~~LLe~LA~vks~vl~~DL~~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~vp~~vLd~IL~ 195 (1680)
+...+.+.+.+|.++-+..+..+ .++.+..|.+..+.+.+....+.....-..++..||. ...||.+-+..++.
T Consensus 147 ~~~~l~~ll~~l~nviKfn~~~l-----~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~-y~~iP~~sl~~~i~ 220 (464)
T PF11864_consen 147 EESNLSDLLQFLVNVIKFNFNYL-----DEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIIT-YGDIPSESLSPCIE 220 (464)
T ss_pred hhhhHHHHHHHHHHHHhcCCCCC-----CHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH-cCcCChHHHHHHHH
Confidence 44567777888887777655542 2455555555555554433344444555777777776 67899999998887
Q ss_pred HhcC-----CCcHHHHHHHHHHHHHh-hhhhHHHHHHHHHHhhcCCCCCCCC---chh--HHHHHHHHHhh----cchh-
Q 000310 196 ALGR-----NKNDTARRLAMNVIEQC-AGKLEAGIKQFLVSSMSGDSRPGHS---HID--YHEVIYDVYRC----SPQI- 259 (1680)
Q Consensus 196 ~l~~-----~k~~~a~~lA~~v~~~~-~dkL~~~I~qyf~~il~~d~~~~~~---~~~--~h~Li~eL~~~----~P~l- 259 (1680)
-|-. .-.+++++..++||... ...+-+.++.++ .+.+..... .++ ++-+=.-+|.. .|.+
T Consensus 221 vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL----~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~ 296 (464)
T PF11864_consen 221 VLCSIVNSVSLCKPSWRTMRNLLKSHLGHSAIRTLCDIL----RSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLP 296 (464)
T ss_pred HHhhHhcccccchhHHHHHHHHHcCccHHHHHHHHHHHH----cccCccccccHHHHhhHHHHHHHHHhccccCCcceec
Confidence 6621 22348899999888532 333334444444 211111111 111 12222234555 3333
Q ss_pred --hhhhhhhhcccccCCChHHHHHHHHHHHHhhc
Q 000310 260 --LSGVVPYLTGELLTDQLDTRLKAVGLVGDLFA 291 (1680)
Q Consensus 260 --L~~ViP~Le~EL~sed~~~Rl~At~llG~mfs 291 (1680)
+..|+|.|..=|+..+.-+=...+.++-++|.
T Consensus 297 ~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 297 FSPSSVLPSLLNALKSNSPRVDYEILLLINRLLD 330 (464)
T ss_pred ccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence 33599999999998888777788888888883
No 99
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=74.61 E-value=1.4e+02 Score=42.67 Aligned_cols=220 Identities=17% Similarity=0.242 Sum_probs=121.3
Q ss_pred HhccCCCCC---CCCChhhHHHHHHHHHhhhhhh-hcccCCchHHHHHH---------HHHHHHhhcCCChhhHHHHHHH
Q 000310 107 GTFSGLKDT---GGPSFGRRVVILETLAKYRSCV-VMLDLECDELVNEM---------YSTFFAVASDDHPESVLSSMQT 173 (1680)
Q Consensus 107 ~qf~~L~d~---~~p~f~q~~~LLe~LA~vks~v-l~~DL~~~~Li~~l---------F~~ff~~v~~~~~~~V~~~m~~ 173 (1680)
.+|++++.| .+....++.++|.++-.+-.-- ..+|-.-++||..| .+..+..+..-.|+++...|..
T Consensus 768 G~~p~~~~p~~~g~k~~~k~~~~l~~l~nIL~Gy~~~l~~~~~~li~~Lr~p~Lp~~ew~~~~s~~~~Rlp~~l~~~~~~ 847 (2196)
T KOG0368|consen 768 GSFPRLGSPAIEGNKPHQKFHSLLNRLENILAGYDPKLDETVQELIKVLRDPELPYLEWQEHISALANRLPPNLDKSLES 847 (2196)
T ss_pred ccccccCCccccccchHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHhcCCCcChHHHHHHHHHHhccCChhHHHHHHH
Confidence 467777766 2333445667777665532111 11121124555555 5556666667778888888888
Q ss_pred HHHHHhcccccccHHHHHHHHHH-hc-CCCcH---------HHHHHHHHHHHHhhh--------hhHHHH--HHHHHHhh
Q 000310 174 IMIVLLEESEDIQEDLLVILLSA-LG-RNKND---------TARRLAMNVIEQCAG--------KLEAGI--KQFLVSSM 232 (1680)
Q Consensus 174 IL~~vI~Ese~vp~~vLd~IL~~-l~-~~k~~---------~a~~lA~~v~~~~~d--------kL~~~I--~qyf~~il 232 (1680)
++..-..-.-..|...|..||.. +. .+.++ |--+|...-+..-.. -|+.|+ -+||+.
T Consensus 848 ~~~~~~s~~t~FPakql~~il~~~~~~~~~~~~~~~~~~~~pl~~l~~~y~~g~~~H~~~v~~~Lle~Yl~VEk~F~~-- 925 (2196)
T KOG0368|consen 848 LVAKSASRITQFPAKQLAKILDAHLATLNRAEREVLFVNIQPLLKLVSRYSGGLEAHAKEVVHDLLEEYLEVEKLFNG-- 925 (2196)
T ss_pred HHHHHhhhcccCcHHHHHHHHHHHhhccccccchhhhhhhhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 88887666668899988888853 32 11111 222222222221111 122221 123321
Q ss_pred cCCCCCCCCchhHHHHHHHHHhhcchhhhhhhhhhcccccCCC-hHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhh
Q 000310 233 SGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQ-LDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKR 311 (1680)
Q Consensus 233 ~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed-~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R 311 (1680)
....+-..|..|-+-.+..+..|+-++. ++.+ ..--.+.+.+|+.|-. ++ ...++.|..-|.+
T Consensus 926 --------~~~~~e~~i~~lr~~~~~d~~kVv~~i~---SHs~i~~KN~Lv~~ll~~l~~-~s----~~~~~~f~~iL~~ 989 (2196)
T KOG0368|consen 926 --------RDSHYEDVILRLREENKKDLKKVVDIIL---SHSQIKSKNKLVLALLDQLKP-PS----SKVSDEFRDILRK 989 (2196)
T ss_pred --------CcchHHHHHHHHHHhhhhHHHHHHHHHH---cchhhhhhhHHHHHHHHHhcC-CC----CCCCHHHHHHHHH
Confidence 1112334566666655555666655442 2222 2233455666666554 33 4556778888888
Q ss_pred hcCCChhHHHHHHHHhHHHHhcCCCCCChHHHH
Q 000310 312 LTDRIVAVRMSVLEHVKSCLLTDPSRADAPQIL 344 (1680)
Q Consensus 312 ~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii 344 (1680)
+.+-+...-.++.-.|.+||...|+..+....+
T Consensus 990 l~~L~~~~~~eVal~Ar~iLi~~ps~~~R~n~~ 1022 (2196)
T KOG0368|consen 990 LTELNHTNTSEVALKARQILIQSPSYELRHNQI 1022 (2196)
T ss_pred HHhhccchHHHHHHHHHHHHHhCcchhhhHHHH
Confidence 888888887888888888888877643333333
No 100
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=74.14 E-value=11 Score=49.57 Aligned_cols=108 Identities=16% Similarity=0.154 Sum_probs=82.4
Q ss_pred cHHHHH-HHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhh-hhcCCCC
Q 000310 301 FHSVFS-EFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVAC-HALNSIP 378 (1680)
Q Consensus 301 y~~~w~-~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~-~~l~~V~ 378 (1680)
|+.-+. ..++=|.=.+..||+..+++..+.+-.-+..-...+|...+..-+.|+++.+|..+|+++..+|. -.-..+.
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln 406 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLN 406 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhc
Confidence 444444 33455666788999999999988665322111234788999999999999999999999988886 3445689
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHHH
Q 000310 379 VETVKLVAERLRDKSVLVKRYTMERLADIF 408 (1680)
Q Consensus 379 ~elL~~LaeR~RDKK~~VR~eAm~~La~LY 408 (1680)
.|+++.++.---|-...+|..+-.+||++=
T Consensus 407 ~Ellr~~ar~q~d~~~~irtntticlgki~ 436 (690)
T KOG1243|consen 407 GELLRYLARLQPDEHGGIRTNTTICLGKIA 436 (690)
T ss_pred HHHHHHHHhhCccccCcccccceeeecccc
Confidence 999999988877888888888877777763
No 101
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=73.67 E-value=24 Score=47.67 Aligned_cols=125 Identities=21% Similarity=0.235 Sum_probs=92.2
Q ss_pred CchhHHHHHHHHHhhcchh-----hhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHH-HHHhhhcC
Q 000310 241 SHIDYHEVIYDVYRCSPQI-----LSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFS-EFLKRLTD 314 (1680)
Q Consensus 241 ~~~~~h~Li~eL~~~~P~l-----L~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~-~fL~R~~D 314 (1680)
....+|+.+.-+-...|.- +...+|.|=+-|.-.|..+|+-+++++-..+...+ .+...|-+|+- .+|.=..|
T Consensus 883 ~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~-tL~t~~~~Tlvp~lLsls~~ 961 (1030)
T KOG1967|consen 883 QKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE-TLQTEHLSTLVPYLLSLSSD 961 (1030)
T ss_pred chhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc-ccchHHHhHHHHHHHhcCCC
Confidence 3334677777666666652 12356677788999999999999999998887655 57777766654 66655555
Q ss_pred CC---hhHHHHHHHHhHHHHhcCCCC---CChHHHHHHHHhhhCCChhHHHHHHHHHH
Q 000310 315 RI---VAVRMSVLEHVKSCLLTDPSR---ADAPQILTALCDRLLDFDENVRKQVVAVI 366 (1680)
Q Consensus 315 ~s---~~VR~~~ve~~~~iL~~~p~~---~~~~eii~~L~~rL~D~DEkVR~aaV~ai 366 (1680)
-+ ..||...+++...+..--|.+ ....+++.+|...|-|+--.||.+||.+=
T Consensus 962 ~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 962 NDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred CCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 55 889999999987755533432 33468999999999999999999987653
No 102
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=73.51 E-value=28 Score=48.21 Aligned_cols=156 Identities=18% Similarity=0.256 Sum_probs=100.1
Q ss_pred chhHHHHHHHHHhh--cchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHH----hhh-cC
Q 000310 242 HIDYHEVIYDVYRC--SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFL----KRL-TD 314 (1680)
Q Consensus 242 ~~~~h~Li~eL~~~--~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL----~R~-~D 314 (1680)
.+++-+|+.+|-++ .-..|-.|+|++-+-+.....++|..|++||.++++.-. .+....-.+|.+|| .++ +|
T Consensus 440 K~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr-~~~~~daniF~eYlfP~L~~l~~d 518 (1431)
T KOG1240|consen 440 KLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVR-DIPPSDANIFPEYLFPHLNHLLND 518 (1431)
T ss_pred HHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhcc-CCCcccchhhHhhhhhhhHhhhcc
Confidence 34678888888766 556788899999999999999999999999999998642 34333334444443 333 45
Q ss_pred -CChhHHHHHHHHhHHHHhc------------------CCC---------CCChHHHH----HHHHhhhCCChhHHHHHH
Q 000310 315 -RIVAVRMSVLEHVKSCLLT------------------DPS---------RADAPQIL----TALCDRLLDFDENVRKQV 362 (1680)
Q Consensus 315 -~s~~VR~~~ve~~~~iL~~------------------~p~---------~~~~~eii----~~L~~rL~D~DEkVR~aa 362 (1680)
-...||++...+++.+-.+ .|. ..+..++. ..+...|.|++.-||++-
T Consensus 519 ~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~L 598 (1431)
T KOG1240|consen 519 SSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRAL 598 (1431)
T ss_pred CccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 5677999888777653321 111 01122333 344445777777777777
Q ss_pred HHHHHHhhhhhcCCCCHH-HHHHHHHhhccCChhHHH
Q 000310 363 VAVICDVACHALNSIPVE-TVKLVAERLRDKSVLVKR 398 (1680)
Q Consensus 363 V~ai~~la~~~l~~V~~e-lL~~LaeR~RDKK~~VR~ 398 (1680)
++.|+.+..+--..=+.+ +|..|.-=+-||.+..|.
T Consensus 599 le~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~ 635 (1431)
T KOG1240|consen 599 LESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRG 635 (1431)
T ss_pred HHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHH
Confidence 777777665444333333 345555666666666654
No 103
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=71.50 E-value=5.7 Score=50.92 Aligned_cols=105 Identities=16% Similarity=0.129 Sum_probs=72.1
Q ss_pred HHHHH-HHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHH
Q 000310 302 HSVFS-EFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE 380 (1680)
Q Consensus 302 ~~~w~-~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~e 380 (1680)
.+++. .|..|..|+++.||+.|+.+....+.+-|+--.-.-.+.++.=-|.|..+.||+.+++.+--+..+.++. +
T Consensus 273 ~dicdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~---d 349 (740)
T COG5537 273 KDICDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHT---D 349 (740)
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcc---h
Confidence 34444 7999999999999999999998888776641111124456666799999999999999986665544331 1
Q ss_pred HHHHHHHhh---------ccCChhHHHHHHHHHHHHHHH
Q 000310 381 TVKLVAERL---------RDKSVLVKRYTMERLADIFRG 410 (1680)
Q Consensus 381 lL~~LaeR~---------RDKK~~VR~eAm~~La~LY~~ 410 (1680)
.++.+.+|- +|=.. ||-.+++.|..+--.
T Consensus 350 ~ir~f~eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~l 387 (740)
T COG5537 350 AIRRFVERFKDRILEFLRTDSDC-VRICSIKSLCYLRIL 387 (740)
T ss_pred HHHHHHHHHHHHHHHHHhhccch-hhHHHHHHHHHHHHh
Confidence 344444444 34444 888888888766443
No 104
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=71.29 E-value=1.4e+02 Score=35.51 Aligned_cols=106 Identities=17% Similarity=0.234 Sum_probs=69.7
Q ss_pred hhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCC---ChhhhcHHHHHHHHhhhcCCChhHHHH-HHHHhHHHHhc
Q 000310 258 QILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGS---ANNEQFHSVFSEFLKRLTDRIVAVRMS-VLEHVKSCLLT 333 (1680)
Q Consensus 258 ~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s---~~a~~y~~~w~~fL~R~~D~s~~VR~~-~ve~~~~iL~~ 333 (1680)
.++.+.||.+-.-|.+.++.+|..|.++|..|=..|.. -+..+=++-|..++.+-.+.+.-+|+. |++.+...+..
T Consensus 130 ~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~ 209 (254)
T PF04826_consen 130 HMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKK 209 (254)
T ss_pred hhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCc
Confidence 34555677776667788999999999999877666521 123344666777777877777777765 44444444433
Q ss_pred CCC------C---------CChHHHHHHHHhhhCCChhHHHHHHH
Q 000310 334 DPS------R---------ADAPQILTALCDRLLDFDENVRKQVV 363 (1680)
Q Consensus 334 ~p~------~---------~~~~eii~~L~~rL~D~DEkVR~aaV 363 (1680)
... . .+.+.+.+.|......+|+.||.+||
T Consensus 210 ~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~v~ 254 (254)
T PF04826_consen 210 EAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQVI 254 (254)
T ss_pred ccceeccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhhcC
Confidence 210 0 23445667777777889999998864
No 105
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=70.70 E-value=5.2 Score=34.32 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=28.5
Q ss_pred HHHhhhhhcCCCCH-HHHHHHHHhhccCChhHHHHHHHHH
Q 000310 366 ICDVACHALNSIPV-ETVKLVAERLRDKSVLVKRYTMERL 404 (1680)
Q Consensus 366 i~~la~~~l~~V~~-elL~~LaeR~RDKK~~VR~eAm~~L 404 (1680)
+..+....+..... .++..+..|+.|.++.||+.|+..|
T Consensus 3 l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 3 LSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 44444444444433 5678999999999999999998764
No 106
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.29 E-value=52 Score=43.57 Aligned_cols=165 Identities=13% Similarity=0.130 Sum_probs=114.0
Q ss_pred hHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHH---------------H
Q 000310 244 DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSE---------------F 308 (1680)
Q Consensus 244 ~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~---------------f 308 (1680)
++--++|.++---|+-|-..+|-|-+.|..+|+.+-..||..+.++-....-++..--|..|+- .
T Consensus 163 kAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKL 242 (877)
T KOG1059|consen 163 KAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKL 242 (877)
T ss_pred HHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHH
Confidence 5677888888889999999999999999999999999999999988875543443333333321 1
Q ss_pred HhhhcCCChhHHHHHHHHhHHHHh-----------------c-----CCCCC-ChHHHHHHHHhhhCCChhHHHHHHHHH
Q 000310 309 LKRLTDRIVAVRMSVLEHVKSCLL-----------------T-----DPSRA-DAPQILTALCDRLLDFDENVRKQVVAV 365 (1680)
Q Consensus 309 L~R~~D~s~~VR~~~ve~~~~iL~-----------------~-----~p~~~-~~~eii~~L~~rL~D~DEkVR~aaV~a 365 (1680)
.+...=..|..+...++-+-.++. - +|... -++-.+..|+..+-|+|.+.+.-.+-+
T Consensus 243 F~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLla 322 (877)
T KOG1059|consen 243 FAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLA 322 (877)
T ss_pred HhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHH
Confidence 234444556665555444333222 1 22221 122345777888999999999999999
Q ss_pred HHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 000310 366 ICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFR 409 (1680)
Q Consensus 366 i~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~ 409 (1680)
++.++..++..|... ...+..-+-||..+||-.|+..|--+-+
T Consensus 323 m~KI~ktHp~~Vqa~-kdlIlrcL~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 323 MSKILKTHPKAVQAH-KDLILRCLDDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred HHHHhhhCHHHHHHh-HHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence 999999998887553 1223455678999999999988754443
No 107
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=69.22 E-value=33 Score=46.97 Aligned_cols=91 Identities=23% Similarity=0.414 Sum_probs=73.7
Q ss_pred HHHHHHHHHhhcchhhhhhhhhhcccccC-------CChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCCh
Q 000310 245 YHEVIYDVYRCSPQILSGVVPYLTGELLT-------DQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIV 317 (1680)
Q Consensus 245 ~h~Li~eL~~~~P~lL~~ViP~Le~EL~s-------ed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~ 317 (1680)
+-.++..|+.|-|++-..++-+|..+... -+...++..++.+|.|....-......+ .....+|.-|.=.+.
T Consensus 481 YsRlVAtl~~~M~dvat~lv~~L~~eFr~~~hkK~q~~ietk~~~VrfIsEL~KF~lv~~~~if-~cLk~ll~dF~~hnI 559 (1128)
T KOG2051|consen 481 YSRLVATLSKCMPDVATELVTMLRKEFRSHLHKKAQINIETKLKIVRFISELCKFQLVPKFEIF-SCLKMLLNDFTHHNI 559 (1128)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHhhhhhCccChHHHH-HHHHHHHHhcccccH
Confidence 45789999999999999999999888753 3688899999999999876432222222 356678888888999
Q ss_pred hHHHHHHHHhHHHHhcCCC
Q 000310 318 AVRMSVLEHVKSCLLTDPS 336 (1680)
Q Consensus 318 ~VR~~~ve~~~~iL~~~p~ 336 (1680)
++=+.+++.|+.+|.++|.
T Consensus 560 Em~c~lLE~~GrfLlr~pE 578 (1128)
T KOG2051|consen 560 EMACVLLESCGRFLLRSPE 578 (1128)
T ss_pred HHHHHHHHhcchhhhcChh
Confidence 9999999999999999986
No 108
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=68.46 E-value=2.5e+02 Score=35.36 Aligned_cols=259 Identities=17% Similarity=0.172 Sum_probs=0.0
Q ss_pred hcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCH
Q 000310 300 QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV 379 (1680)
Q Consensus 300 ~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~ 379 (1680)
+|-+-|..-|+-..--+-+=|++ .++++.+...-|+..+ +-+++-.+.+-|-|-.||++|++.+-.++.-..-.-..
T Consensus 22 q~v~~y~~il~~~k~~~k~k~la-sq~ip~~fk~fp~la~--~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~ 98 (460)
T KOG2213|consen 22 QHVDDYEGILKAVKGTSKEKRLA-SQFIPRFFKHFPSLAD--EAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVN 98 (460)
T ss_pred hhHHHHHHHHHHhhcchHHHHHH-HHHHHHHHhhCchhhh--HHHHhhhccccccchhhHHHHHhccchhccCchhhhhH
Q ss_pred HHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhccccchHHHhhhhccCCCCchhHHHHhhccCcCCCC
Q 000310 380 ETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGF 459 (1680)
Q Consensus 380 elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~g~~~~~~~~wIPs~IL~~~Y~nD~~~~lVE~vL~e~LlP~~~ 459 (1680)
++|-.|.. =-.|+.||...-. .+...-...+..|-++|+-+ -..+|.
T Consensus 99 d~l~qLLn-------------k~sl~~Lf~~~~~--~D~~irek~l~fi~tKl~~l----------~~e~L~-------- 145 (460)
T KOG2213|consen 99 DVLVQLLN-------------KASLTGLFGQIEV--GDEQIREKVLKFIRTKLITL----------KGEVLT-------- 145 (460)
T ss_pred HHHHHHHH-------------HHHHHHHHhhhhh--hhHHHHHHHHHHHHHHhhcc----------cHHHhh--------
Q ss_pred CHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhcCCCc-----HHHHHHHHHHHHHHH
Q 000310 460 SVKDR--VRHWVRIFSGFDRIEMKALEKILEQKQRLQ-----QEMQRYLSLRQMHQDGDA-----PEIQKKILFCFRVMS 527 (1680)
Q Consensus 460 ~~~~R--~~~ll~l~~~LD~~~~kal~~il~~k~~l~-----~~~~~~l~l~~~~~~~d~-----~ei~~kL~~~i~~Ls 527 (1680)
.+-+| +.-.-..+.+.+..++.+|..||..-..++ ..|+++.+--+...+-|. ++...++-+|...-.
T Consensus 146 kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k~~~a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~Av 225 (460)
T KOG2213|consen 146 KEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQTKAGEARLQELAEEQEGLADLDAFNVSDADYVDRFISCLLMAV 225 (460)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhh
Q ss_pred hhcCCchHHHHHH---------HHHHhhccHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 000310 528 RSFAEPAKAEENF---------LILDQLKDANVWKILMNL--LDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSM 594 (1680)
Q Consensus 528 ~~fPDp~Ka~~~L---------~kf~klnD~Ri~kLLk~~--idp~td~~tv~~a~kELlkkL~~k~~~~d~l~~Ll~ 594 (1680)
-+|.-..+...-+ ..|+++-+.|=..+||.+ |++.|+.+.+......++..|...-+..++-..+.+
T Consensus 226 PfFargapSskf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMss~ttaq~a~q~Lpsi~elLk~yMpa~kt~ee~~f 303 (460)
T KOG2213|consen 226 PFFARGAPSSKFVEYLNKHIIPHHFDKLTEERKLDLLKALAEMSSYTTAQAARQMLPSIVELLKEYMPAPKTGEEMQF 303 (460)
T ss_pred hhhhcCCchhHHHHHHHhhhcccccccchHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHhcccCCccHHHHH
No 109
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=68.41 E-value=9.1 Score=30.31 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=24.2
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000310 382 VKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1680)
Q Consensus 382 L~~LaeR~RDKK~~VR~eAm~~La~LY~~ 410 (1680)
+-.+.+.+.|..+.||..|...|+.+.+.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 44567889999999999999999999863
No 110
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=67.96 E-value=62 Score=42.73 Aligned_cols=219 Identities=16% Similarity=0.151 Sum_probs=116.7
Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhhhhHHH-HHHHHH
Q 000310 151 MYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAG-IKQFLV 229 (1680)
Q Consensus 151 lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~vp~~vLd~IL~~l~~~k~~~a~~lA~~v~~~~~dkL~~~-I~qyf~ 229 (1680)
.|..+..++|.-..+.+. .+...+.... -......+++..+....+.+|..+..++|.. .++... ..++|.
T Consensus 348 ~f~~Lv~~lr~l~~~~L~----~l~~~~~~~~--~~~~~r~~~lDal~~aGT~~av~~i~~~I~~--~~~~~~ea~~~l~ 419 (618)
T PF01347_consen 348 KFSRLVRLLRTLSYEDLE----ELYKQLKSKS--KKEQARKIFLDALPQAGTNPAVKFIKDLIKS--KKLTDDEAAQLLA 419 (618)
T ss_dssp HHHHHHHHHTTS-HHHHH----HHHHHHTTS-----HHHHHHHHHHHHHH-SHHHHHHHHHHHHT--T-S-HHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHH----HHHHHHHhhc--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc--CCCCHHHHHHHHH
Confidence 366666666644444432 2333333221 2333444555555554556777888877766 333322 223333
Q ss_pred HhhcCCCCCCCCchhHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcC----C---------CCC
Q 000310 230 SSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAV----P---------GSA 296 (1680)
Q Consensus 230 ~il~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~----~---------~s~ 296 (1680)
.+... +-+-.+++|..+.+.++......+..+|..|.-.+|.|.-. . ...
T Consensus 420 ~l~~~-----------------~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~ 482 (618)
T PF01347_consen 420 SLPFH-----------------VRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRC 482 (618)
T ss_dssp HHHHT----------------------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS
T ss_pred HHHhh-----------------cCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchh
Confidence 32111 11223444454555555444456678888888888887642 1 223
Q ss_pred hhhhcHHHHHHHHhh-hcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCC---hhHHHHHHHHHHHHhhhh
Q 000310 297 NNEQFHSVFSEFLKR-LTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDF---DENVRKQVVAVICDVACH 372 (1680)
Q Consensus 297 ~a~~y~~~w~~fL~R-~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~---DEkVR~aaV~ai~~la~~ 372 (1680)
....|-.-+...|+. ....+..-++.++++++++= +| .++..|...+.+. ...||.+||.++..++..
T Consensus 483 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g--~~------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~ 554 (618)
T PF01347_consen 483 IIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLG--HP------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH 554 (618)
T ss_dssp --GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---G------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT
T ss_pred hHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccC--Cc------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc
Confidence 455665555555553 34567789999999999742 22 4666777766666 899999988887655433
Q ss_pred hcCCCCHHHHHHHHHhhccCC--hhHHHHHHHHHHH
Q 000310 373 ALNSIPVETVKLVAERLRDKS--VLVKRYTMERLAD 406 (1680)
Q Consensus 373 ~l~~V~~elL~~LaeR~RDKK--~~VR~eAm~~La~ 406 (1680)
. |..+...+..-..|.. +.||-.|...|.+
T Consensus 555 ~----~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 555 C----PEKVREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp -----HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred C----cHHHHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 3 4444444555555544 6799998877765
No 111
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=67.43 E-value=2.6e+02 Score=36.91 Aligned_cols=254 Identities=18% Similarity=0.246 Sum_probs=150.5
Q ss_pred HHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhccc-----ccccHHHHHHHHHHhcCCCcH--HHHHHHHHHHHHhh---
Q 000310 148 VNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEES-----EDIQEDLLVILLSALGRNKND--TARRLAMNVIEQCA--- 217 (1680)
Q Consensus 148 i~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Es-----e~vp~~vLd~IL~~l~~~k~~--~a~~lA~~v~~~~~--- 217 (1680)
+.++|.-+..-++ .|-.++...++.-|..+|--. ..-..+...+++..|...... .--.+...+|.+..
T Consensus 397 fd~vl~pLw~g~~-~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~t 475 (975)
T COG5181 397 FDEVLCPLWEGAS-QHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDT 475 (975)
T ss_pred HHHHHHHHHHHHH-hcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCC
Confidence 3444444444443 233445555555565555332 245667888888888533211 33344444454332
Q ss_pred -hhhHHHH-HHHHHHh----hcCCCCCCCCchhHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhc
Q 000310 218 -GKLEAGI-KQFLVSS----MSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFA 291 (1680)
Q Consensus 218 -dkL~~~I-~qyf~~i----l~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs 291 (1680)
.++...| +.||.-. ..+| ..+....-+-.++..=.--+|.+.--++-+ ++.+-++.|..++.++.++|+
T Consensus 476 p~~lr~~v~pefF~~fw~rr~A~d-r~~~k~v~~ttvilAk~~g~~~v~~kil~~----~~De~ep~r~m~a~~vsri~~ 550 (975)
T COG5181 476 PWKLRDQVSPEFFSPFWRRRSAGD-RRSYKQVVLTTVILAKMGGDPRVSRKILEY----YSDEPEPYRKMNAGLVSRIFS 550 (975)
T ss_pred HHHHHHhhcHHhhchHHHhhhccc-ccccceeehhHHHHHHHcCChHHHHHHHhh----ccCCcchhhhhhhHHHHHHHH
Confidence 2333333 2344322 1222 122222223344444444566666655544 555788999999999999998
Q ss_pred CCCCC-h----------------------------------------hhhc-HHHHHHHHhhhcCCChhHHHHHHHHhHH
Q 000310 292 VPGSA-N----------------------------------------NEQF-HSVFSEFLKRLTDRIVAVRMSVLEHVKS 329 (1680)
Q Consensus 292 ~~~s~-~----------------------------------------a~~y-~~~w~~fL~R~~D~s~~VR~~~ve~~~~ 329 (1680)
.-|.. | .+-| +.+-..-|++.+-+.|.||+...+.++.
T Consensus 551 ~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~s 630 (975)
T COG5181 551 RLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGS 630 (975)
T ss_pred hcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 76421 1 1122 6778899999999999999998888776
Q ss_pred HHh--cCCCCCChHHHH----HHHHhhhCCChhHHHHHHHHHHHHhhh-hhcCCC--CH-HHHHHHHHhhccCChhHHHH
Q 000310 330 CLL--TDPSRADAPQIL----TALCDRLLDFDENVRKQVVAVICDVAC-HALNSI--PV-ETVKLVAERLRDKSVLVKRY 399 (1680)
Q Consensus 330 iL~--~~p~~~~~~eii----~~L~~rL~D~DEkVR~aaV~ai~~la~-~~l~~V--~~-elL~~LaeR~RDKK~~VR~e 399 (1680)
+.. .+.. + ...+ ..|-+-|-.-+..|=-.+++|||.+-. +.+... |. .+|-++.--+|.|..+|-..
T Consensus 631 l~~vlk~c~--e-~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~n 707 (975)
T COG5181 631 LAKVLKACG--E-TKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVAN 707 (975)
T ss_pred HHHHHHhcc--h-HHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhh
Confidence 432 2221 1 1233 344455666778888888899988754 556544 22 35667788889999999999
Q ss_pred HHHHHHHHHHH
Q 000310 400 TMERLADIFRG 410 (1680)
Q Consensus 400 Am~~La~LY~~ 410 (1680)
+|..++.+-..
T Consensus 708 ti~lvg~I~~~ 718 (975)
T COG5181 708 TIALVGTICMN 718 (975)
T ss_pred HHHHHHHHHhc
Confidence 99998887665
No 112
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.85 E-value=4.6e+02 Score=35.63 Aligned_cols=144 Identities=16% Similarity=0.184 Sum_probs=90.5
Q ss_pred cchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCC--hhHHHH---HHHHhHHH
Q 000310 256 SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRI--VAVRMS---VLEHVKSC 330 (1680)
Q Consensus 256 ~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s--~~VR~~---~ve~~~~i 330 (1680)
+|+.-...--+|...|...++..+..|.+.+=.|+.. | +.+|+++..-+ ||.=.+ .++... ..+.++
T Consensus 14 ~p~~e~~~~~~ik~~Lek~~~~~KIeamK~ii~~mln-G----e~~p~Llm~Ii-Rfvlps~~~elKKLly~ywE~vP-- 85 (948)
T KOG1058|consen 14 SPDGEPMSEDEIKEKLEKGDDEVKIEAMKKIIALMLN-G----EDLPSLLMTII-RFVLPSRNHELKKLLYYYWELVP-- 85 (948)
T ss_pred CCcccccchHHHHHHHhcCChHHHHHHHHHHHHHHHc-C----CCchHHHHHHh-heeeccCchHHHHHHHHHHHHcc--
Confidence 4444444445777788999999999999988777765 3 45566554332 433221 112111 112222
Q ss_pred HhcCCCCCChHH---HHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000310 331 LLTDPSRADAPQ---ILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1680)
Q Consensus 331 L~~~p~~~~~~e---ii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~L 407 (1680)
.+++++....| +.++++.=|.-|.|=||-.+..-+|.+--.-+- +.++-++..-+--++.=||+.|+-.+..+
T Consensus 86 -Kt~~dgkl~~EMILvcna~RkDLQHPNEyiRG~TLRFLckLkE~ELl---epl~p~IracleHrhsYVRrNAilaifsI 161 (948)
T KOG1058|consen 86 -KTDSDGKLLHEMILVCNAYRKDLQHPNEYIRGSTLRFLCKLKEPELL---EPLMPSIRACLEHRHSYVRRNAILAIFSI 161 (948)
T ss_pred -ccCCCcccHHHHHHHHHHHhhhccCchHhhcchhhhhhhhcCcHHHh---hhhHHHHHHHHhCcchhhhhhhheeehhH
Confidence 23333322233 347888899999999999999998886432211 12334455555567889999999999999
Q ss_pred HHHh
Q 000310 408 FRGC 411 (1680)
Q Consensus 408 Y~~~ 411 (1680)
|+..
T Consensus 162 yk~~ 165 (948)
T KOG1058|consen 162 YKNF 165 (948)
T ss_pred Hhhh
Confidence 9973
No 113
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=66.32 E-value=1.6e+02 Score=35.97 Aligned_cols=67 Identities=21% Similarity=0.255 Sum_probs=39.9
Q ss_pred HHHHHHHhhccccchHhHHHHHHHhh--cchhhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhc
Q 000310 648 EELVNLLKEENEIIKEGILHVLAKAG--GTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAIT 714 (1680)
Q Consensus 648 ~~Li~lL~~~~~~~~~~aLkiLak~~--k~~~e~~~~~~s~l~~~L~~lal~GtpkqAKyAVr~Laa~~ 714 (1680)
.+.++.|.+......+.+|..|.++- +++.+.+......+...+.+....|++++.-.|.++++.+.
T Consensus 46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ 114 (309)
T PF05004_consen 46 KEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLA 114 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 34455555555455667777765442 22333332223346666777777899888889988865543
No 114
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=65.98 E-value=10 Score=35.72 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=27.0
Q ss_pred ccceEEEecCCC---CceEEEEEEEecCCCCeeEEEccC
Q 000310 1380 IGYRIKVWWPMD---KQFYEGTIKSYDPIKKKHVILYDD 1415 (1680)
Q Consensus 1380 vG~rv~V~Wp~D---~~~Y~G~V~~y~~~~~~H~v~YdD 1415 (1680)
.|.+|.|.--.+ ..||.|+|...+... +..|.|+|
T Consensus 3 ~G~~VEV~s~e~g~~gaWf~a~V~~~~~~~-~~~V~Y~~ 40 (68)
T PF05641_consen 3 KGDEVEVSSDEDGFRGAWFPATVLKENGDD-KYLVEYDD 40 (68)
T ss_dssp TT-EEEEEE-SBTT--EEEEEEEEEEETT--EEEEEETT
T ss_pred CCCEEEEEEcCCCCCcEEEEEEEEEeCCCc-EEEEEECC
Confidence 588999987664 699999999999876 99999964
No 115
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=65.05 E-value=22 Score=35.69 Aligned_cols=84 Identities=18% Similarity=0.219 Sum_probs=71.6
Q ss_pred cccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHH
Q 000310 268 TGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTAL 347 (1680)
Q Consensus 268 e~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L 347 (1680)
-.+|....+++|-.+..+|.+++..+. .....-+.+..-|+.=..|-++=|=..+|+....+...+|. ++++.|
T Consensus 9 l~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~-----~vl~~L 82 (92)
T PF10363_consen 9 LSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD-----EVLPIL 82 (92)
T ss_pred HHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH-----HHHHHH
Confidence 345677889999999999999999876 34556789999999999999999999999999888877773 689999
Q ss_pred HhhhCCChhH
Q 000310 348 CDRLLDFDEN 357 (1680)
Q Consensus 348 ~~rL~D~DEk 357 (1680)
.+...|.+++
T Consensus 83 ~~~y~~~~~~ 92 (92)
T PF10363_consen 83 LDEYADPSEQ 92 (92)
T ss_pred HHHHhCcccC
Confidence 9988887753
No 116
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.03 E-value=4.4e+02 Score=34.72 Aligned_cols=268 Identities=13% Similarity=0.152 Sum_probs=164.9
Q ss_pred hhhhhhcccCC-chHHHHHHHHHHHHhhcCCChh-hHHHHHHHHHHHHhcccccccHHHHHHHHHHhcCCCcH-------
Q 000310 133 YRSCVVMLDLE-CDELVNEMYSTFFAVASDDHPE-SVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKND------- 203 (1680)
Q Consensus 133 vks~vl~~DL~-~~~Li~~lF~~ff~~v~~~~~~-~V~~~m~~IL~~vI~Ese~vp~~vLd~IL~~l~~~k~~------- 203 (1680)
||-++.-.|.+ -+.+|.++-..|--.-..++.+ .+.....-.+..=++... .-..++-.+++.|......
T Consensus 28 Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~-Y~~~iv~Pv~~cf~D~d~~vRyyACE 106 (675)
T KOG0212|consen 28 VKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAG-YLEKIVPPVLNCFSDQDSQVRYYACE 106 (675)
T ss_pred HHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHH-HHHHhhHHHHHhccCccceeeeHhHH
Confidence 44555444443 2456666666654422222222 122222222222222222 4566777788888644321
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhh------cCCCCCCCCchhHHHHHHHHHhh-----c-chhhhhhhhhhcccc
Q 000310 204 TARRLAMNVIEQCAGKLEAGIKQFLVSSM------SGDSRPGHSHIDYHEVIYDVYRC-----S-PQILSGVVPYLTGEL 271 (1680)
Q Consensus 204 ~a~~lA~~v~~~~~dkL~~~I~qyf~~il------~~d~~~~~~~~~~h~Li~eL~~~-----~-P~lL~~ViP~Le~EL 271 (1680)
+.|++|+- |- ..|--||+.+. ..|+.. .....-+|+-.|.+- + -=-|...||.|.+-+
T Consensus 107 sLYNiaKv----~k----~~v~~~Fn~iFdvL~klsaDsd~--~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eri 176 (675)
T KOG0212|consen 107 SLYNIAKV----AK----GEVLVYFNEIFDVLCKLSADSDQ--NVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERI 176 (675)
T ss_pred HHHHHHHH----hc----cCcccchHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHH
Confidence 55666652 22 23344555542 222111 111223333333322 2 123677999999999
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHh---cCCCCCChHHHHHHHH
Q 000310 272 LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLL---TDPSRADAPQILTALC 348 (1680)
Q Consensus 272 ~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~---~~p~~~~~~eii~~L~ 348 (1680)
-.-++..|.-.+.-+--+.+.|+.+|..--|+++.-.+.=..|-+.+||..+=.+..++|. +.|+.-+..++++-+.
T Consensus 177 y~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv 256 (675)
T KOG0212|consen 177 YVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLV 256 (675)
T ss_pred hcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhcc
Confidence 9999999999999999999999999998889999999999999999999877776666664 4576434568999999
Q ss_pred hhhCCChhHHHHHHHHHHHHhhhhhcCCC---CHHHHHHHHHhhccCCh-hHHHHHHHH---HHHHHHHh
Q 000310 349 DRLLDFDENVRKQVVAVICDVACHALNSI---PVETVKLVAERLRDKSV-LVKRYTMER---LADIFRGC 411 (1680)
Q Consensus 349 ~rL~D~DEkVR~aaV~ai~~la~~~l~~V---~~elL~~LaeR~RDKK~-~VR~eAm~~---La~LY~~~ 411 (1680)
..+.-+++..+..|+.-|.++.......+ -..+|..+..-+-|+-. .++..|... |.++...+
T Consensus 257 ~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~ 326 (675)
T KOG0212|consen 257 PHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSE 326 (675)
T ss_pred ccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999888877765443322 22345566666777766 466554433 44444443
No 117
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=64.99 E-value=5.1e+02 Score=37.01 Aligned_cols=136 Identities=18% Similarity=0.148 Sum_probs=91.2
Q ss_pred ccCCC-hHHHHHHHHHHHHh---hcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHH
Q 000310 271 LLTDQ-LDTRLKAVGLVGDL---FAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTA 346 (1680)
Q Consensus 271 L~sed-~~~Rl~At~llG~m---fs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~ 346 (1680)
|.+|. .-+|..-++-++.+ |+..++ +.-+..-.+.=.||++...|.++.+.+..+-.-=.-+....=|+..
T Consensus 586 Llsd~~~~Vkr~Lle~i~~LC~FFGk~ks-----ND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPL 660 (1431)
T KOG1240|consen 586 LLSDSPPIVKRALLESIIPLCVFFGKEKS-----NDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPL 660 (1431)
T ss_pred HHcCCchHHHHHHHHHHHHHHHHhhhccc-----ccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHH
Confidence 33443 46777766666665 444332 2223333444468999999999999987532211112223457799
Q ss_pred HHhhhCCChhHHHHHHHHHHHHhhhhhc-CCC-CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 000310 347 LCDRLLDFDENVRKQVVAVICDVACHAL-NSI-PVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1680)
Q Consensus 347 L~~rL~D~DEkVR~aaV~ai~~la~~~l-~~V-~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~ 411 (1680)
|..-|.|.+|-|=..|..++.-+....+ ... =.++++.++--+.--+.=||+.++.-++.+|+..
T Consensus 661 l~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 661 LQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred HHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence 9999999999998887777766655332 221 2357788888888888889999999998888864
No 118
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.56 E-value=15 Score=47.15 Aligned_cols=141 Identities=21% Similarity=0.192 Sum_probs=85.4
Q ss_pred hhhhhhcccccCCChHHHHHHHHHHHHhhcCCC--CChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhc-----C
Q 000310 262 GVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG--SANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT-----D 334 (1680)
Q Consensus 262 ~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~--s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~-----~ 334 (1680)
+++|.+-.-|.+.+..+|-.|+-.||.+.+... .+++-.+ .+....|.=++.... +.++..+...|.+ +
T Consensus 152 gavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~-g~l~pLl~~l~~~~~---~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 152 GAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSC-GALDPLLRLLNKSDK---LSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred CchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhh-cchHHHHHHhccccc---hHHHHHHHHHHHHHHcCCC
Confidence 456666777889999999999999999988742 1112222 122233333333332 3444444333332 3
Q ss_pred CC--CCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCC----CHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 000310 335 PS--RADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI----PVETVKLVAERLRDKSVLVKRYTMERLAD 406 (1680)
Q Consensus 335 p~--~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V----~~elL~~LaeR~RDKK~~VR~eAm~~La~ 406 (1680)
|+ .+.+..++++|...|...|+.|...||-+++-++-...+.+ ...+...|-+.+.-.+..|+.-|+..+|+
T Consensus 228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGN 305 (514)
T KOG0166|consen 228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGN 305 (514)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccc
Confidence 43 34567899999999999999999999888876654333222 12233345555555566666555555554
No 119
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.30 E-value=5.7e+02 Score=35.77 Aligned_cols=306 Identities=16% Similarity=0.196 Sum_probs=145.6
Q ss_pred hhhHHHHHHHHHHHHhccc-ccccHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHhh--------------hhhHHHHH
Q 000310 164 PESVLSSMQTIMIVLLEES-EDIQEDLLVILLSALGRNKND---TARRLAMNVIEQCA--------------GKLEAGIK 225 (1680)
Q Consensus 164 ~~~V~~~m~~IL~~vI~Es-e~vp~~vLd~IL~~l~~~k~~---~a~~lA~~v~~~~~--------------dkL~~~I~ 225 (1680)
|.-++..+..++..||..- ..=.+.+++.|...+-..... +|-.+-.+|+.++- +-+-|.|.
T Consensus 102 p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il 181 (1010)
T KOG1991|consen 102 PELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDIL 181 (1010)
T ss_pred chHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 6677778888888888661 123377888777766432211 34333444444433 34556666
Q ss_pred HHHHHhhcCCCCCCCCchhHHHHHHHHHhh-----------cchhhhhhhhhh--------cccccCCChHHHH------
Q 000310 226 QFLVSSMSGDSRPGHSHIDYHEVIYDVYRC-----------SPQILSGVVPYL--------TGELLTDQLDTRL------ 280 (1680)
Q Consensus 226 qyf~~il~~d~~~~~~~~~~h~Li~eL~~~-----------~P~lL~~ViP~L--------e~EL~sed~~~Rl------ 280 (1680)
++|+.++..++.. ......+|..+++. +|+.+.+.+... =.|..+.|++.|.
T Consensus 182 ~~~~~ll~~~s~~---s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK 258 (1010)
T KOG1991|consen 182 QIFNGLLSQESYQ---SVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWK 258 (1010)
T ss_pred HHHHhhccccchH---HHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhhcccccchh
Confidence 7777766654221 11233344443332 344444433221 1245555677664
Q ss_pred ---HHHHHHHHhhcCCCCC---------hhhhc-----HHHHHHHHhhhc---C---CChhHHHHHHHHhHHHHhcC---
Q 000310 281 ---KAVGLVGDLFAVPGSA---------NNEQF-----HSVFSEFLKRLT---D---RIVAVRMSVLEHVKSCLLTD--- 334 (1680)
Q Consensus 281 ---~At~llG~mfs~~~s~---------~a~~y-----~~~w~~fL~R~~---D---~s~~VR~~~ve~~~~iL~~~--- 334 (1680)
=|...+-|+|.--|+. |++-| +-+...||+=.. - .++.|=...+.+..+++...
T Consensus 259 ~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~tw 338 (1010)
T KOG1991|consen 259 CKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQCVSHASTW 338 (1010)
T ss_pred hHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhccHHHHH
Confidence 4788889998754422 22211 222223322111 1 22222222333333322211
Q ss_pred ----CCCCChHHHHHHHH---hh---------hCCChhHHHHHHHHHHHHhhh-hhcCCCCHHHHHHHHHhhccCChhHH
Q 000310 335 ----PSRADAPQILTALC---DR---------LLDFDENVRKQVVAVICDVAC-HALNSIPVETVKLVAERLRDKSVLVK 397 (1680)
Q Consensus 335 ----p~~~~~~eii~~L~---~r---------L~D~DEkVR~aaV~ai~~la~-~~l~~V~~elL~~LaeR~RDKK~~VR 397 (1680)
|+ .+-|+..+. .| =.||+|=+|+- ... ..+..-....+..+..-++-++..+=
T Consensus 339 kll~PH---l~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~-------~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l 408 (1010)
T KOG1991|consen 339 KLLKPH---LQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKK-------FDIFEDGYSPDTAALDFLTTLVSKRGKETL 408 (1010)
T ss_pred HHhhhH---HHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhc-------CchhcccCCCcHHHHHHHHHHHHhcchhhh
Confidence 11 011111110 01 15777778875 111 11222222334445555555555666
Q ss_pred HHHHHHHHHHHHHhhhhccCCCc------chhccccchHHHhhhhccCCCCchhHHHHhhccCcCCCCCH----HHHHHH
Q 000310 398 RYTMERLADIFRGCCLRNFNGSI------NQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSV----KDRVRH 467 (1680)
Q Consensus 398 ~eAm~~La~LY~~~~~~~~~g~~------~~~~~~wIPs~IL~~~Y~nD~~~~lVE~vL~e~LlP~~~~~----~~R~~~ 467 (1680)
.-.|..+..++..|-.....+.. +--.++.|-+.|+. +.+=..++|..+..+++|.-.++ ..|+--
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K----~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~ 484 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLK----KSPYKSQMEYFLVNHVFPEFQSPYGYLRARACW 484 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHcc----CCchHHHHHHHHHHHhhHhhcCchhHHHHHHHH
Confidence 66778888888776433211111 11235666655543 22112478888888899875444 344444
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 000310 468 WVRIFSGFDRIEMKALEKI 486 (1680)
Q Consensus 468 ll~l~~~LD~~~~kal~~i 486 (1680)
.++.|+..|-+...-|..+
T Consensus 485 vl~~~~~~df~d~~~l~~a 503 (1010)
T KOG1991|consen 485 VLSQFSSIDFKDPNNLSEA 503 (1010)
T ss_pred HHHHHHhccCCChHHHHHH
Confidence 4456665544333333333
No 120
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=63.87 E-value=68 Score=40.09 Aligned_cols=182 Identities=16% Similarity=0.257 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHhccCCCCCCCCChhhHHHH-HH----HHHhhhhhhh--------cccCCchHHHHHHHHHHHHhhc---
Q 000310 97 VLKDIFQLIVGTFSGLKDTGGPSFGRRVVI-LE----TLAKYRSCVV--------MLDLECDELVNEMYSTFFAVAS--- 160 (1680)
Q Consensus 97 qLkdIF~l~i~qf~~L~d~~~p~f~q~~~L-Le----~LA~vks~vl--------~~DL~~~~Li~~lF~~ff~~v~--- 160 (1680)
-++++|.+|+.-+..+.-..++|-.+..-= +. .+.-..+.+. .++-+ -..++.+.++++++
T Consensus 140 ai~k~lpl~lqGl~~~~~~~dayL~~~l~~ii~~y~~~Fl~~~~~~~~~~l~~~~~~~~~---~~~~l~~~il~~i~~~f 216 (373)
T PF14911_consen 140 AIRKSLPLFLQGLGRLSQRQDAYLNQQLRNIIQQYLPRFLPASPSKLVARLSTLLSAFTP---RNEELRKFILQVIRSNF 216 (373)
T ss_pred HHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHhHhccCCCccccccccccccchhh---hhhHHHHHHHHHHHHHH
Confidence 489999999998888888788887665321 11 1111111111 12222 12233333333332
Q ss_pred ----CCChhhHHHHHHHHHHHHhcc----cccccHHHHHHHH----HHhcCCC-c----HHHHHHHHHHHHHhh------
Q 000310 161 ----DDHPESVLSSMQTIMIVLLEE----SEDIQEDLLVILL----SALGRNK-N----DTARRLAMNVIEQCA------ 217 (1680)
Q Consensus 161 ----~~~~~~V~~~m~~IL~~vI~E----se~vp~~vLd~IL----~~l~~~k-~----~~a~~lA~~v~~~~~------ 217 (1680)
+.-|+.=...+..++.+++.+ ....-..++..++ ..+.--. . .-|-.+-..+++.|.
T Consensus 217 l~~~~~~p~p~l~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~~~~~~ 296 (373)
T PF14911_consen 217 LEFKGSAPPPRLASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQVGSSGE 296 (373)
T ss_pred hcCCCCCCCCcHHHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHcccccCcch
Confidence 222332233334444555555 2222222233222 2221111 1 133344444444554
Q ss_pred --hhhHHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHhhcchhhhhhhhhhcccccC--------CChHHHHHHHHHHH
Q 000310 218 --GKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLT--------DQLDTRLKAVGLVG 287 (1680)
Q Consensus 218 --dkL~~~I~qyf~~il~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~s--------ed~~~Rl~At~llG 287 (1680)
+.|+..+++|..+-+. -....++.++..|...+|+++.+.||+|+.+|.. +|...|..=-++++
T Consensus 297 ~~~~l~s~lrsfvqk~l~------~~t~~~f~~l~~vA~l~p~lV~~Lip~i~q~l~~~E~kRG~G~d~~lR~~~~rL~~ 370 (373)
T PF14911_consen 297 PREQLTSVLRSFVQKYLA------HYTYQYFQFLEKVAELDPQLVISLIPTIRQSLKDSERKRGLGRDVALRKALSRLLS 370 (373)
T ss_pred HHHHHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 3355555555433111 1223689999999999999999999999998863 36667766555554
No 121
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=63.16 E-value=1.5e+02 Score=36.18 Aligned_cols=150 Identities=16% Similarity=0.184 Sum_probs=92.8
Q ss_pred hhhhhcccccCCChHHHHHHHHHHHHhhcC--CCCChhhhcHHHHHHHHhhhcCCC--hhHHHHHHHHhHHHHhcC-CCC
Q 000310 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAV--PGSANNEQFHSVFSEFLKRLTDRI--VAVRMSVLEHVKSCLLTD-PSR 337 (1680)
Q Consensus 263 ViP~Le~EL~sed~~~Rl~At~llG~mfs~--~~s~~a~~y~~~w~~fL~R~~D~s--~~VR~~~ve~~~~iL~~~-p~~ 337 (1680)
++.+++.-|+......+.+|.+++|-+.-. +|..-..-|..+...+..-..|.+ +.+|..|+.+.+-+..-. .+.
T Consensus 87 L~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~ 166 (309)
T PF05004_consen 87 LLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDE 166 (309)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCCh
Confidence 344555556666668889999999977544 345555666666665555556655 578989988776543322 122
Q ss_pred CChHHHHHHHHh---h-hCCC-----------hhHHHHHHHHHHHHhhhhhc----CCCCHHHHHHHHHhhccCChhHHH
Q 000310 338 ADAPQILTALCD---R-LLDF-----------DENVRKQVVAVICDVACHAL----NSIPVETVKLVAERLRDKSVLVKR 398 (1680)
Q Consensus 338 ~~~~eii~~L~~---r-L~D~-----------DEkVR~aaV~ai~~la~~~l----~~V~~elL~~LaeR~RDKK~~VR~ 398 (1680)
.+..++++.|.. . .... +..|..+|+.+.+=|+.... ...-.+.+..|.+.+--....||.
T Consensus 167 ~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRi 246 (309)
T PF05004_consen 167 EETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRI 246 (309)
T ss_pred hHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 333333344441 1 1122 35688888888766653221 111223455667777777889999
Q ss_pred HHHHHHHHHHHHhh
Q 000310 399 YTMERLADIFRGCC 412 (1680)
Q Consensus 399 eAm~~La~LY~~~~ 412 (1680)
.|=+.||-||-..+
T Consensus 247 AAGEaiAll~E~~~ 260 (309)
T PF05004_consen 247 AAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999875
No 122
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=62.80 E-value=1.7e+02 Score=40.75 Aligned_cols=121 Identities=16% Similarity=0.130 Sum_probs=78.4
Q ss_pred ChHHHHHHHHHHHHhhcCCCC-ChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCC
Q 000310 275 QLDTRLKAVGLVGDLFAVPGS-ANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLD 353 (1680)
Q Consensus 275 d~~~Rl~At~llG~mfs~~~s-~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D 353 (1680)
+.-+|+=+.-+||+++..-.. .+.=..-......+.=..|-.|+||++.|-+.+.+|.+-...-+ --....+.+.|
T Consensus 613 ~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fd---e~~~~~~~~~~ 689 (1387)
T KOG1517|consen 613 EPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFD---EQTLVVEEEID 689 (1387)
T ss_pred cHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccc---hhhhhhhhhhc
Confidence 688999999999999986432 22223334455566677899999999999999998876422111 11122233444
Q ss_pred -ChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhh
Q 000310 354 -FDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCC 412 (1680)
Q Consensus 354 -~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~ 412 (1680)
.|++++.+-. ....+-.++.++.|=.+-||.+-...|+.+-..|.
T Consensus 690 l~~~~~~~E~~--------------i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~ 735 (1387)
T KOG1517|consen 690 LDDERTSIEDL--------------IIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYV 735 (1387)
T ss_pred chhhhhhHHHH--------------HHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhH
Confidence 4444444311 11112356789999999999998888887766553
No 123
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=62.53 E-value=75 Score=41.93 Aligned_cols=188 Identities=17% Similarity=0.255 Sum_probs=101.2
Q ss_pred HHHHHHhc-cCCCCCCCCChhhHHHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhc
Q 000310 102 FQLIVGTF-SGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLE 180 (1680)
Q Consensus 102 F~l~i~qf-~~L~d~~~p~f~q~~~LLe~LA~vks~vl~~DL~~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~ 180 (1680)
|..++.+| ......+.+.-.+ +..-|-....||-++|-.|..||..+++.-.- +.+..+.......+..++.
T Consensus 31 Y~~L~~~l~~~~~~~d~~~~~~---l~~~L~~L~~~Vs~Ld~~~~~LV~ail~~~W~----~~~~~~v~~y~~Fl~~Lvs 103 (563)
T PF05327_consen 31 YDELVEQLSDPSESKDAISVSQ---LIRWLKALSSCVSLLDSSCKQLVEAILSLNWL----GRDEDFVEAYIQFLINLVS 103 (563)
T ss_dssp HHHHHHHHHS-TT-TTS--HHH---HHHHHHHHHHGGGGG-SCCHHHHHHHHT-TGG----GS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccccCcccccHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCC----CCCHHHHHHHHHHHHHHHH
Confidence 45555555 3333333333333 33444455567877887789999888877332 2355677777888888887
Q ss_pred ccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCCCCC--CCCchhHHHHHHHHHhhcch
Q 000310 181 ESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRP--GHSHIDYHEVIYDVYRCSPQ 258 (1680)
Q Consensus 181 Ese~vp~~vLd~IL~~l~~~k~~~a~~lA~~v~~~~~dkL~~~I~qyf~~il~~d~~~--~~~~~~~h~Li~eL~~~~P~ 258 (1680)
....--..+|+.|...|.+.....+-. .+.... ......+|.+|..|-+++|.
T Consensus 104 a~~~yl~~vl~~LV~~f~p~~~~~~~~-------------------------~~~~~~~~~~~~~~vH~~L~~Il~lvP~ 158 (563)
T PF05327_consen 104 AQPKYLSPVLSMLVKNFIPPPSSIAEW-------------------------PGCPPEKRREIYERVHDALQKILRLVPT 158 (563)
T ss_dssp H-GGGHHHHHHHHHHGGGS-HHHHHH----------------------------------------HHHHHHHHHHH-GG
T ss_pred hhHHHHHHHHHHHHHhccCCCcccccc-------------------------chhhhhhhhhhHHHHHHHHHHHHHHcCC
Confidence 777778888888888887643211000 111100 11223689999999999999
Q ss_pred hhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHH
Q 000310 259 ILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSV 323 (1680)
Q Consensus 259 lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ 323 (1680)
....++|.|....=.-..+.+...+ -+-.|+.-.+. ...--..+|..-+.|...++++|.+.|
T Consensus 159 s~~~L~~~l~~~FP~~~~~~~~~~~-Yv~NlL~l~~Y-~P~L~~~Il~lIi~rLi~iDVeiq~~~ 221 (563)
T PF05327_consen 159 SPSFLIPILVQNFPHKRKSKDEHVN-YVRNLLRLTEY-CPELRSDILSLIIERLIKIDVEIQIEL 221 (563)
T ss_dssp GHHHHHHHHHHTS--TTS-HHHHHH-HHHHHHHHHCC--GGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCcCCCCChHHHHH-HHHHHHHHHcc-hHHHHHHHHHHHHHHHHHHhcccccCc
Confidence 9988888887766555444433332 22233322110 123334667777777777666555554
No 124
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=62.50 E-value=3.3e+02 Score=32.51 Aligned_cols=64 Identities=16% Similarity=0.266 Sum_probs=43.6
Q ss_pred HHHHhhhCCChhHHHHHHHHHHHHhhhhhc-CCCCHH----HHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000310 345 TALCDRLLDFDENVRKQVVAVICDVACHAL-NSIPVE----TVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1680)
Q Consensus 345 ~~L~~rL~D~DEkVR~aaV~ai~~la~~~l-~~V~~e----lL~~LaeR~RDKK~~VR~eAm~~La~LY~~ 410 (1680)
+.|...|.+.|+.+|..++..++.+...-. ..++.. ++.-+..|+.|.. .|.- |+.+|..|.+.
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~-~~~~-~l~gl~~L~~~ 70 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHA-CVQP-ALKGLLALVKM 70 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHh-hHHH-HHHHHHHHHhC
Confidence 468889999999999999999887765443 223332 3457778886653 3333 37777777743
No 125
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=62.43 E-value=77 Score=35.83 Aligned_cols=130 Identities=17% Similarity=0.158 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHhhcC-CCCCh---------------hhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcC-------
Q 000310 278 TRLKAVGLVGDLFAV-PGSAN---------------NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD------- 334 (1680)
Q Consensus 278 ~Rl~At~llG~mfs~-~~s~~---------------a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~------- 334 (1680)
+|+.|..+|+.++.. +.-.+ ....++++...+ .|.++.||++.+.....+|...
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il---~Dp~~kvR~aA~~~l~~lL~gsk~~L~~A 78 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCIL---KDPSPKVRAAAASALAALLEGSKPFLAQA 78 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHH---cCCchhHHHHHHHHHHHHHHccHHHHHHH
Confidence 799999999999876 32111 112234444433 4999999999999998877532
Q ss_pred -----CCC---CC---hHHHHHHHHhhh-----CCChhHHHHHHHHHHHHhhh-hhcCCCCHHH----HHHHHHhhccCC
Q 000310 335 -----PSR---AD---APQILTALCDRL-----LDFDENVRKQVVAVICDVAC-HALNSIPVET----VKLVAERLRDKS 393 (1680)
Q Consensus 335 -----p~~---~~---~~eii~~L~~rL-----~D~DEkVR~aaV~ai~~la~-~~l~~V~~el----L~~LaeR~RDKK 393 (1680)
+.+ .. ...++..+...| ...+-.+-.+.++++..+.. ..++.++.++ +..+..+++.+.
T Consensus 79 e~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d 158 (182)
T PF13251_consen 79 EESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRD 158 (182)
T ss_pred HhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCC
Confidence 110 11 123444444443 45566677788888877765 3356677765 457788999999
Q ss_pred hhHHHHHHHHHHHHHHH
Q 000310 394 VLVKRYTMERLADIFRG 410 (1680)
Q Consensus 394 ~~VR~eAm~~La~LY~~ 410 (1680)
+.||..++..++-+...
T Consensus 159 ~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 159 PNVRVAALSCLGALLSV 175 (182)
T ss_pred CcHHHHHHHHHHHHHcC
Confidence 99999999999988764
No 126
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=62.38 E-value=5.4e+02 Score=34.85 Aligned_cols=215 Identities=20% Similarity=0.210 Sum_probs=128.5
Q ss_pred cCC-chHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHhc-C--CCcHHHHHHHHHHHHHh
Q 000310 141 DLE-CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALG-R--NKNDTARRLAMNVIEQC 216 (1680)
Q Consensus 141 DL~-~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~vp~~vLd~IL~~l~-~--~k~~~a~~lA~~v~~~~ 216 (1680)
+++ .+|++..+|..++... .....+|..-.+.|+..+.++--.|+.+|-+.|...+. + .+. ++-++-.-+ |
T Consensus 75 q~d~e~DlV~~~f~hlLRg~-Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dre-p~VRiqAv~---a 149 (892)
T KOG2025|consen 75 QLDKEEDLVAGTFYHLLRGT-ESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDRE-PNVRIQAVL---A 149 (892)
T ss_pred ccCchhhHHHHHHHHHHhcc-cCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccC-chHHHHHHH---H
Confidence 444 4779999988887643 44567899999999999999988999999988876552 1 111 111111111 0
Q ss_pred hhhhHHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCC
Q 000310 217 AGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA 296 (1680)
Q Consensus 217 ~dkL~~~I~qyf~~il~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~ 296 (1680)
.. +|.+ + +.+....+-.++..|-+..| +.++|..|.-. ++-.
T Consensus 150 Ls--------rlQ~----d--~~dee~~v~n~l~~liqnDp-----------------S~EVRRaaLsn----I~vd--- 191 (892)
T KOG2025|consen 150 LS--------RLQG----D--PKDEECPVVNLLKDLIQNDP-----------------SDEVRRAALSN----ISVD--- 191 (892)
T ss_pred HH--------HHhc----C--CCCCcccHHHHHHHHHhcCC-----------------cHHHHHHHHHh----hccC---
Confidence 11 1111 1 22233444555554444444 57788877542 2221
Q ss_pred hhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCC
Q 000310 297 NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS 376 (1680)
Q Consensus 297 ~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~ 376 (1680)
++|+-.-++|..|.+..+|..+-+.+-.=+ +--...+..-+-.|..-|.|-++-||.|.+.+|..-. +..
T Consensus 192 -----nsTlp~IveRarDV~~anRrlvY~r~lpki--d~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~W---l~~ 261 (892)
T KOG2025|consen 192 -----NSTLPCIVERARDVSGANRRLVYERCLPKI--DLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGW---LRF 261 (892)
T ss_pred -----cccchhHHHHhhhhhHHHHHHHHHHhhhhh--hhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH---hhh
Confidence 246667789999999999988777654322 1111112233446666789999999999888884432 333
Q ss_pred CCHHHHHHHHHhhccCC-hhHHHHHHHHHHHHHH
Q 000310 377 IPVETVKLVAERLRDKS-VLVKRYTMERLADIFR 409 (1680)
Q Consensus 377 V~~elL~~LaeR~RDKK-~~VR~eAm~~La~LY~ 409 (1680)
....+++.| +|+-=-+ ..|+..|++.|-..-+
T Consensus 262 ~dgni~ElL-~~ldvsnss~vavk~lealf~~v~ 294 (892)
T KOG2025|consen 262 SDGNILELL-ERLDVSNSSEVAVKALEALFSGVR 294 (892)
T ss_pred ccccHHHHH-HHhccccchHHHHHHHHHHHHHHH
Confidence 334444433 4443333 4788888888777433
No 127
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins []. Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....
Probab=60.77 E-value=18 Score=36.29 Aligned_cols=53 Identities=17% Similarity=0.133 Sum_probs=40.7
Q ss_pred CcccccceEEEecCCCCceEEEEEEEecCCCCeeEEEc-cCCcceeeecccccEEEe
Q 000310 1376 IEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILY-DDEDVEVLRLDKERWELL 1431 (1680)
Q Consensus 1376 ~~~lvG~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~Y-dDgd~E~l~L~~e~~~~~ 1431 (1680)
....+|..+-+.=+.|..||.|.| ..+...+.-.|.| |-|..+.+... +++.+
T Consensus 50 ~~~~~~~~~~~~~~~~~~w~Ra~I-~~~~~~~~~~V~~iD~G~~~~v~~~--~l~~l 103 (121)
T PF00567_consen 50 PESNPGEGCLCVVSEDGRWYRAVI-TVDIDENQYKVFLIDYGNTEKVSAS--DLRPL 103 (121)
T ss_dssp ST--TTEEEEEEETTTSEEEEEEE-EEEECTTEEEEEETTTTEEEEEEGG--GEEE-
T ss_pred cccccCCEEEEEEecCCceeeEEE-EEecccceeEEEEEecCceEEEcHH--Hhhhh
Confidence 455588888888899999999999 7777788889998 99999997654 44444
No 128
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=60.58 E-value=17 Score=38.42 Aligned_cols=42 Identities=21% Similarity=0.407 Sum_probs=36.5
Q ss_pred cceEEEecCCCCceEEEEEEEecCCCCeeEEEccCCcceeeec
Q 000310 1381 GYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLRL 1423 (1680)
Q Consensus 1381 G~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdDgd~E~l~L 1423 (1680)
|.+|=..|+.|.-||.|+|..+- ..+.-.|.+++|+.+.+..
T Consensus 1 g~~VlAR~~~DG~YY~GtV~~~~-~~~~~lV~f~~~~~~~v~~ 42 (124)
T PF15057_consen 1 GQKVLARREEDGFYYPGTVKKCV-SSGQFLVEFDDGDTQEVPI 42 (124)
T ss_pred CCeEEEeeCCCCcEEeEEEEEcc-CCCEEEEEECCCCEEEeCh
Confidence 77888999999999999999998 6678888888888877753
No 129
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.68 E-value=8.1e+02 Score=36.03 Aligned_cols=310 Identities=15% Similarity=0.209 Sum_probs=177.0
Q ss_pred HHHHHHHHhhhcCCCCCCCh-hHHHHHHHHHHHhccCCCCCCCCChhhH-----HHHHHHHHhhhhhhhcccCCchHHHH
Q 000310 76 VATCICEITRITAPEAPYSD-DVLKDIFQLIVGTFSGLKDTGGPSFGRR-----VVILETLAKYRSCVVMLDLECDELVN 149 (1680)
Q Consensus 76 vAcCLadIlRI~APdAPytd-~qLkdIF~l~i~qf~~L~d~~~p~f~q~-----~~LLe~LA~vks~vl~~DL~~~~Li~ 149 (1680)
.+.|=-|-.++ -|+-|+-. ..=.+.+.+|...|-.+-+..+|.+.|. ..+...++.-+..++++- ++.
T Consensus 790 ~~~~~~ds~~l-e~~~~~~~~~~n~~~~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~----eI~- 863 (1702)
T KOG0915|consen 790 YTALGTDSNFL-EEKTDTEEDKVNDTRETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLK----EIQ- 863 (1702)
T ss_pred hhhcccchhhc-ccccchhhcccCCccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccH----HHH-
Confidence 34454566666 33333321 1123456666666665556677777665 233445566666665543 333
Q ss_pred HHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccc-cccHHHHHHHHHHhcC--------------------CCcHH--HH
Q 000310 150 EMYSTFFAVASDDHPESVLSSMQTIMIVLLEESE-DIQEDLLVILLSALGR--------------------NKNDT--AR 206 (1680)
Q Consensus 150 ~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese-~vp~~vLd~IL~~l~~--------------------~k~~~--a~ 206 (1680)
.-|..++. -++++...|.. .=|+-|-+=++ ..-.++++-+++.|.. +++.. .-
T Consensus 864 ~aF~~~Ls-d~dEf~QDvAs---rGlglVYelgd~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~i 939 (1702)
T KOG0915|consen 864 EAFSHLLS-DNDEFSQDVAS---RGLGLVYELGDSSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKI 939 (1702)
T ss_pred HHHHHHhc-ccHHHHHHHHh---cCceEEEecCCchhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcc
Confidence 55666554 22222222221 11111111111 2333444444443311 11111 12
Q ss_pred HHHHHHHHHhhhhhHHHHH-HHHHHhhc------CC-CC-C------CC--Cchh--HHHHHHHHHhhcchhhhhhhhhh
Q 000310 207 RLAMNVIEQCAGKLEAGIK-QFLVSSMS------GD-SR-P------GH--SHID--YHEVIYDVYRCSPQILSGVVPYL 267 (1680)
Q Consensus 207 ~lA~~v~~~~~dkL~~~I~-qyf~~il~------~d-~~-~------~~--~~~~--~h~Li~eL~~~~P~lL~~ViP~L 267 (1680)
--=++||+-.+|-=||.+- +|+ +.-. .. +. . .+ ..+. +-.||-.|||+-
T Consensus 940 sTYKELc~LASdl~qPdLVYKFM-~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~----------- 1007 (1702)
T KOG0915|consen 940 STYKELCNLASDLGQPDLVYKFM-QLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQ----------- 1007 (1702)
T ss_pred hHHHHHHHHHhhcCChHHHHHHH-HHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhc-----------
Confidence 2236889888888888764 443 2221 10 00 0 00 1111 235566665542
Q ss_pred cccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCC---CChHHHH
Q 000310 268 TGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR---ADAPQIL 344 (1680)
Q Consensus 268 e~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~---~~~~eii 344 (1680)
=..+..++-.-|-.-+-++.++.....+-+-+++.+.|.-..++.=.||.+.+-+..++|..+|.. +...+++
T Consensus 1008 ----yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw 1083 (1702)
T KOG0915|consen 1008 ----YDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELW 1083 (1702)
T ss_pred ----cCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 235677777777777777777654455566899999999999999999999999999999988742 3346788
Q ss_pred HHHHhhhCCChhHHHHHHHHHHHHhhhhhcCC------C-CHHHHHH-----HHHhhccCChhHHHHHHHHHHHHHHHh
Q 000310 345 TALCDRLLDFDENVRKQVVAVICDVACHALNS------I-PVETVKL-----VAERLRDKSVLVKRYTMERLADIFRGC 411 (1680)
Q Consensus 345 ~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~------V-~~elL~~-----LaeR~RDKK~~VR~eAm~~La~LY~~~ 411 (1680)
.++-+-.=|-.|.||.|+=++...++.-.... . ..+++.. +.+-+--|-.+||+-+|.+|.+|-+.+
T Consensus 1084 ~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kss 1162 (1702)
T KOG0915|consen 1084 EAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSS 1162 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhc
Confidence 88888888999999998766655554322211 1 1133432 333444566799999999999999876
No 130
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=59.48 E-value=6.1e+02 Score=34.58 Aligned_cols=52 Identities=17% Similarity=0.320 Sum_probs=25.8
Q ss_pred cCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHH
Q 000310 313 TDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVI 366 (1680)
Q Consensus 313 ~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai 366 (1680)
.|.-+.|+..++..+..+|.+.|. .+.-|+..|..+|-|++-+|-.-|+--+
T Consensus 314 ~D~L~~vk~raL~ti~~lL~~kPE--qE~~LL~~lVNKlGDpqnKiaskAsylL 365 (988)
T KOG2038|consen 314 KDPLEEVKKRALKTIYDLLTNKPE--QENNLLVLLVNKLGDPQNKIASKASYLL 365 (988)
T ss_pred cccHHHHHHHHHHHHHHHHhCCcH--HHHHHHHHHHHhcCCcchhhhhhHHHHH
Confidence 344455555555555555555553 2334555555555555555544443333
No 131
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=59.30 E-value=67 Score=35.45 Aligned_cols=138 Identities=15% Similarity=0.167 Sum_probs=86.2
Q ss_pred ChhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhC-CcCcccc----HHHHHHHHhhccc-cchHhHHHHHHHhhcc
Q 000310 602 NKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFS-PLLLGGT----EEELVNLLKEENE-IIKEGILHVLAKAGGT 675 (1680)
Q Consensus 602 Nks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~-P~lFk~~----v~~Li~lL~~~~~-~~~~~aLkiLak~~k~ 675 (1680)
+++.+..+..++..--.+.+....-.+..|+..+...+ |++|..| +..|..+|+..++ .+.+.++.+|+.+-..
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 67777777777654333322222335678999999998 9999666 4667777776443 3556677777655332
Q ss_pred hhhhhhcccchHHHHHHHHhhc-CChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhhcCCCchHHHHHHHHHhhcc
Q 000310 676 IREQLAATSSSVDLLLERLCLE-GSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAM 754 (1680)
Q Consensus 676 ~~e~~~~~~s~l~~~L~~lal~-GtpkqAKyAVr~Laa~~~~~~~~~~~~L~~~L~~~L~~~~~l~t~L~sL~~Iaq~aP 754 (1680)
++.. +. +..+ +||...++...+|..+.+ ..-....|.+|+.+-+..|
T Consensus 99 ~~~~-p~-----------l~Rei~tp~l~~~i~~ll~l~~~--------------------~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 99 IRGK-PT-----------LTREIATPNLPKFIQSLLQLLQD--------------------SSCPETALDALATLLPHHP 146 (165)
T ss_pred hcCC-Cc-----------hHHHHhhccHHHHHHHHHHHHhc--------------------cccHHHHHHHHHHHHHHCC
Confidence 2222 11 1111 356666666555553222 0123467888999999999
Q ss_pred cccccchHHHHHHHHHh
Q 000310 755 PVFETRESEIEEFIKSK 771 (1680)
Q Consensus 755 ~vfe~~~~eI~~fiik~ 771 (1680)
..|-.+...|..+++.-
T Consensus 147 tt~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 147 TTFRPFANKIESALLSL 163 (165)
T ss_pred ccccchHHHHHHHHHHH
Confidence 99999999998887643
No 132
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=58.31 E-value=6.5e+02 Score=34.47 Aligned_cols=165 Identities=18% Similarity=0.187 Sum_probs=82.5
Q ss_pred hhccHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHHhcCCCc---hHHHHHHHHHhhhc------cccChhHHHHHHHHHH
Q 000310 545 QLKDANVWKILMNLLDSNTSFDQA-FTGRDDLLKILGAKHR---LYDFLSTLSMKCSY------LLFNKEHVKEILLEVA 614 (1680)
Q Consensus 545 klnD~Ri~kLLk~~idp~td~~tv-~~a~kELlkkL~~k~~---~~d~l~~Ll~R~S~------lifNks~V~~LL~~v~ 614 (1680)
+.+|+=++++|+.+...+...+.. ......|++.+..... ..+++-+|-.-..+ ++-+-.-||.|.+.+.
T Consensus 464 ~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~ 543 (708)
T PF05804_consen 464 KTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLK 543 (708)
T ss_pred hcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhC
Confidence 457888999999998876444333 3445566666654322 34445444332211 2223455666666553
Q ss_pred hhcccchhhhHHHHHHHHHHHHhhC-----CcCcc--ccHHHHHHHHhhccccchHhHHHHHHHhhcchhhhhh----cc
Q 000310 615 AQKSSANAQFMQSCMDILGILARFS-----PLLLG--GTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLA----AT 683 (1680)
Q Consensus 615 ~~~~~~~~~~~~~a~eLL~~IS~~~-----P~lFk--~~v~~Li~lL~~~~~~~~~~aLkiLak~~k~~~e~~~----~~ 683 (1680)
.. ...++ ...+....++..+ ..++. +.+..|+++|....+ --+-+||+++-+...+..... -.
T Consensus 544 ~g-~~~dD----l~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqe-DdE~VlQil~~f~~ll~h~~tr~~ll~ 617 (708)
T PF05804_consen 544 PG-ASEDD----LLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQE-DDEIVLQILYVFYQLLFHEETREVLLK 617 (708)
T ss_pred CC-CCChH----HHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCc-hHHHHHHHHHHHHHHHcChHHHHHHHh
Confidence 21 11111 1222332333221 12221 457899999987433 235688888877654332110 00
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHHHHhhcC
Q 000310 684 SSSVDLLLERLCLEGSRRQAKYAVHALAAITK 715 (1680)
Q Consensus 684 ~s~l~~~L~~lal~GtpkqAKyAVr~Laa~~~ 715 (1680)
......-|-++.-..++..+|.|=.||-.+..
T Consensus 618 ~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e 649 (708)
T PF05804_consen 618 ETEIPAYLIDLMHDKNAEIRKVCDNALDIIAE 649 (708)
T ss_pred ccchHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 12233334344444455666666666554443
No 133
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=58.09 E-value=1.2e+02 Score=38.98 Aligned_cols=178 Identities=14% Similarity=0.241 Sum_probs=89.8
Q ss_pred HHHHHHHHHHhhhcCCC-CCCChh---HHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhcccCCch---H
Q 000310 74 LLVATCICEITRITAPE-APYSDD---VLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECD---E 146 (1680)
Q Consensus 74 a~vAcCLadIlRI~APd-APytd~---qLkdIF~l~i~qf~~L~d~~~p~f~q~~~LLe~LA~vks~vl~~DL~~~---~ 146 (1680)
-|+.-|+.-|+=++.-+ .||.+. +|..|+..+. .+|+||.|. +|+.|+++..=- .+++-+.+ .
T Consensus 44 eylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~------kNPsnP~Fn--HylFEsi~~lir--~~~~~~~~~v~~ 113 (435)
T PF03378_consen 44 EYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVS------KNPSNPRFN--HYLFESIGALIR--FVCEADPEAVSQ 113 (435)
T ss_dssp HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHH------TS---HHHH--HHHHHHHHHHHH--HS-GGGHH---H
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH------hCCCCcchh--hhHHHHHHHHHH--hccCCChhHHHH
Confidence 36777876666655444 677553 2333333332 357888775 678899986422 23332211 4
Q ss_pred HHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccc--cccH---HHHHHHHHHhcCCCc---HHHHHHHHHHHHHhhh
Q 000310 147 LVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESE--DIQE---DLLVILLSALGRNKN---DTARRLAMNVIEQCAG 218 (1680)
Q Consensus 147 Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese--~vp~---~vLd~IL~~l~~~k~---~~a~~lA~~v~~~~~d 218 (1680)
+-..||-.|..+...+ -.....+...||+.+++-.. .+|+ .++..||+.-.-... .+.-+|-...|.++..
T Consensus 114 ~E~~L~P~f~~ILq~d-V~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~ 192 (435)
T PF03378_consen 114 FEEALFPPFQEILQQD-VQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPS 192 (435)
T ss_dssp HHHHHHHHHHHHHHTT--TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCch
Confidence 5555555555554432 22455666778888888766 5665 333344432211111 1445677788888776
Q ss_pred hhH--HH---HHHHHHHhhcCCCCCCCCchhHHHHHHHHHhhcch-hhhhhhhh
Q 000310 219 KLE--AG---IKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQ-ILSGVVPY 266 (1680)
Q Consensus 219 kL~--~~---I~qyf~~il~~d~~~~~~~~~~h~Li~eL~~~~P~-lL~~ViP~ 266 (1680)
.+. .+ |-.-|.-++.++. .+...++|+..|...+|. .|...+|+
T Consensus 193 ~i~~~~~l~~iLgvFQkLi~sk~----~D~~gF~LL~~iv~~~p~~~l~~yl~~ 242 (435)
T PF03378_consen 193 FIVANNQLEPILGVFQKLIASKA----NDHYGFDLLESIVENLPPEALEPYLKQ 242 (435)
T ss_dssp G----S-CHHHHHHHHHHHT-TT----CHHHHHHHHHHHHHHS-HHHHGGGHHH
T ss_pred hhcchhhHHHHHHHHHHHHCCCC----cchHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 552 11 2222344454431 223456788888777776 45555544
No 134
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.07 E-value=6.7e+02 Score=34.25 Aligned_cols=157 Identities=16% Similarity=0.214 Sum_probs=104.5
Q ss_pred hhcc-hhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCh-hhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHH
Q 000310 254 RCSP-QILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSAN-NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCL 331 (1680)
Q Consensus 254 ~~~P-~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~-a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL 331 (1680)
+++- +++-.|+|++|..++++|=..|-.|+-.+|-++-+|..+- ..-=+..-..-+.-..|.+.-||-.-.-..+.|.
T Consensus 355 ~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~ 434 (859)
T KOG1241|consen 355 QCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIA 434 (859)
T ss_pred HHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHH
Confidence 4443 3555799999999999999999999999999998885331 1111333344445556888888865555556666
Q ss_pred hcCCCC----CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCH------------HHHH---HHHHhhccC
Q 000310 332 LTDPSR----ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV------------ETVK---LVAERLRDK 392 (1680)
Q Consensus 332 ~~~p~~----~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~------------elL~---~LaeR~RDK 392 (1680)
...|+. ...+.++..|..=|+| ..+|=..+|-++..++.......+. .++. .+++|.-=-
T Consensus 435 d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgn 513 (859)
T KOG1241|consen 435 DFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGN 513 (859)
T ss_pred hhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccc
Confidence 555532 1223556677777776 5788888898888887433322211 1222 344555444
Q ss_pred ChhHHHHHHHHHHHHHHHh
Q 000310 393 SVLVKRYTMERLADIFRGC 411 (1680)
Q Consensus 393 K~~VR~eAm~~La~LY~~~ 411 (1680)
-...|..|-+.|+.+-+..
T Consensus 514 qsNLR~AAYeALmElIk~s 532 (859)
T KOG1241|consen 514 QSNLRSAAYEALMELIKNS 532 (859)
T ss_pred hhhHHHHHHHHHHHHHHcC
Confidence 5789999999999998853
No 135
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=56.46 E-value=12 Score=49.65 Aligned_cols=46 Identities=24% Similarity=0.518 Sum_probs=36.7
Q ss_pred cccccceEEEecCCC----CceEEEEEEEecCCCC--------eeEEEccCCcceeee
Q 000310 1377 EDLIGYRIKVWWPMD----KQFYEGTIKSYDPIKK--------KHVILYDDEDVEVLR 1422 (1680)
Q Consensus 1377 ~~lvG~rv~V~Wp~D----~~~Y~G~V~~y~~~~~--------~H~v~YdDgd~E~l~ 1422 (1680)
+.-.+-+|||||-+. .+|++|+|-+.-|.+- ++.|+||.|+.|.+.
T Consensus 978 nW~~~d~crvwwrda~~e~g~WWeG~ils~~pksp~fpdSpwery~v~~~~~e~~~~s 1035 (1113)
T KOG0644|consen 978 NWTCRDKCRVWWRDAGEEDGAWWEGRILSVKPKSPDFPDSPWERYIVRYDNTETELHS 1035 (1113)
T ss_pred ccccccceeEEEccCCCcCCceeeeeeeeccCCCCCCCCCcceeEEEEecCCcccccC
Confidence 344788999999854 6899999999776553 689999999776654
No 136
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=55.09 E-value=4e+02 Score=31.11 Aligned_cols=128 Identities=17% Similarity=0.060 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhhCCcCccccHHHHHHHHhhc------cccchHhHHHHHHHhhcchhhhhhcccchHHHHHHHHh-hcC
Q 000310 626 QSCMDILGILARFSPLLLGGTEEELVNLLKEE------NEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLC-LEG 698 (1680)
Q Consensus 626 ~~a~eLL~~IS~~~P~lFk~~v~~Li~lL~~~------~~~~~~~aLkiLak~~k~~~e~~~~~~s~l~~~L~~la-l~G 698 (1680)
..++++|..+-...|..| +..+.++..+.-. +.......+-.++..-..+....|.....+...+..++ ...
T Consensus 56 ~~~~rLl~~lw~~~~r~f-~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~~~~ 134 (234)
T PF12530_consen 56 YVALRLLTLLWKANDRHF-PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGVDLLPLLSGCLNQSC 134 (234)
T ss_pred HHHHHHHHHHHHhCchHH-HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhccc
Confidence 467899999999999999 4555544441111 11111122222222222233333433446777777777 567
Q ss_pred ChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhhcCCCchHHHHHHHHHhhcccc
Q 000310 699 SRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPV 756 (1680)
Q Consensus 699 tpkqAKyAVr~Laa~~~~~~~~~~~~L~~~L~~~L~~~~~l~t~L~sL~~Iaq~aP~v 756 (1680)
.+..+-+|+.+|..++..+ ...+....+-|...| ....-|.++.+|.+++.+.|..
T Consensus 135 ~~~~~alale~l~~Lc~~~-vvd~~s~w~vl~~~l-~~~~rp~v~~~l~~l~~l~~~~ 190 (234)
T PF12530_consen 135 DEVAQALALEALAPLCEAE-VVDFYSAWKVLQKKL-SLDYRPLVLKSLCSLFALVPQG 190 (234)
T ss_pred cHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHhc-CCccchHHHHHHHHHHHHhccc
Confidence 7888889999999888643 233333455555555 2346788899999999987744
No 137
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=54.58 E-value=40 Score=45.65 Aligned_cols=135 Identities=18% Similarity=0.241 Sum_probs=101.0
Q ss_pred CChHHHHHHHHHHHHhhcCCC-CChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhC
Q 000310 274 DQLDTRLKAVGLVGDLFAVPG-SANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLL 352 (1680)
Q Consensus 274 ed~~~Rl~At~llG~mfs~~~-s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~ 352 (1680)
|--+-|..|..++|.++..-. -.+-...++.+..+ ..|..|.||.++.+.++.+-..-+.....+.++..+..-+.
T Consensus 210 d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~l---c~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~ 286 (759)
T KOG0211|consen 210 DWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSL---CQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLR 286 (759)
T ss_pred hhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhh---ccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhh
Confidence 344478888888888886533 22334455555554 57999999999999988765544444455678889999999
Q ss_pred CChhHHHHHHHHHHHHhhh-hhcC-CCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 000310 353 DFDENVRKQVVAVICDVAC-HALN-SIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1680)
Q Consensus 353 D~DEkVR~aaV~ai~~la~-~~l~-~V~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~ 411 (1680)
|--+-||.+|+.....+.. ..-. .+-..+..++..-.-|+.+.||--.+.....+|...
T Consensus 287 DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~ 347 (759)
T KOG0211|consen 287 DDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAV 347 (759)
T ss_pred cchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHh
Confidence 9999999999999877654 2222 333446678888899999999999999999999975
No 138
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=54.36 E-value=29 Score=31.38 Aligned_cols=43 Identities=19% Similarity=0.252 Sum_probs=33.2
Q ss_pred ccceEEEecCCCCceEEEEEEEecCCCC--eeEEEccCCc---ceeeec
Q 000310 1380 IGYRIKVWWPMDKQFYEGTIKSYDPIKK--KHVILYDDED---VEVLRL 1423 (1680)
Q Consensus 1380 vG~rv~V~Wp~D~~~Y~G~V~~y~~~~~--~H~v~YdDgd---~E~l~L 1423 (1680)
||.+|.+.| .+..||.++|..-....+ ...|.|..=+ .||+..
T Consensus 3 vG~~v~~~~-~~~~~y~A~I~~~r~~~~~~~YyVHY~g~nkR~DeWV~~ 50 (55)
T PF11717_consen 3 VGEKVLCKY-KDGQWYEAKILDIREKNGEPEYYVHYQGWNKRLDEWVPE 50 (55)
T ss_dssp TTEEEEEEE-TTTEEEEEEEEEEEECTTCEEEEEEETTSTGCC-EEEET
T ss_pred cCCEEEEEE-CCCcEEEEEEEEEEecCCCEEEEEEcCCCCCCceeeecH
Confidence 899999999 899999999999888654 5777886444 455543
No 139
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=52.67 E-value=1.5e+02 Score=39.02 Aligned_cols=83 Identities=14% Similarity=0.179 Sum_probs=52.4
Q ss_pred CChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCC
Q 000310 274 DQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLD 353 (1680)
Q Consensus 274 ed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D 353 (1680)
-+..+..+|-+.+.+.|.. |..--...+++.|.=+-|-++.||+..++..+.+-..+|. ..+-|.+.|...|.
T Consensus 34 g~~k~K~Laaq~I~kffk~----FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~--~v~kvaDvL~QlL~- 106 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKH----FPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE--HVSKVADVLVQLLQ- 106 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-----GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T---HHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHHHhh----ChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH--HHhHHHHHHHHHHh-
Confidence 3566777888888888864 5555567788888888888888888888888887776664 35677777777666
Q ss_pred ChhHHHHHHH
Q 000310 354 FDENVRKQVV 363 (1680)
Q Consensus 354 ~DEkVR~aaV 363 (1680)
+|+.+=+.+|
T Consensus 107 tdd~~E~~~v 116 (556)
T PF05918_consen 107 TDDPVELDAV 116 (556)
T ss_dssp ---HHHHHHH
T ss_pred cccHHHHHHH
Confidence 5554444433
No 140
>KOG2393 consensus Transcription initiation factor IIF, large subunit (RAP74) [Transcription]
Probab=51.54 E-value=33 Score=43.85 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=13.1
Q ss_pred cccccCCCCCcccccCCCCCCCCC
Q 000310 1573 EVDKMDSEEKPAEEVGSVPQDEKS 1596 (1680)
Q Consensus 1573 ~~~~~~~~~~~~~~~~~~~~~~~~ 1596 (1680)
+++..+|++. +.|-|-.||-.+.
T Consensus 293 e~~E~DYdee-~addEE~Peik~d 315 (555)
T KOG2393|consen 293 EGRELDYDEE-SADDEEAPEIKGD 315 (555)
T ss_pred cccccccccc-cCCcccccccccc
Confidence 4445566766 5555555665553
No 141
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=51.53 E-value=58 Score=36.69 Aligned_cols=70 Identities=14% Similarity=0.180 Sum_probs=58.0
Q ss_pred HHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 000310 341 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1680)
Q Consensus 341 ~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~ 411 (1680)
+.-++.+.+...+++..||..|+..+.-+....+-+ |.+.+-+|.-..-|....||..|+..+..+...|
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvn-P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLVN-PKQCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCC-hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 445667777899999999999999997766544432 6777878888899999999999999999999987
No 142
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=51.47 E-value=3.6e+02 Score=37.06 Aligned_cols=139 Identities=21% Similarity=0.222 Sum_probs=102.7
Q ss_pred hhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhc-CCCCCC
Q 000310 261 SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT-DPSRAD 339 (1680)
Q Consensus 261 ~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~-~p~~~~ 339 (1680)
+.|+|.+.+-+.-+...+|..|+..++.++..-..+. ..+......++.-..|.+..||-...+..-.+... -|+. .
T Consensus 275 s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~-d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~-~ 352 (759)
T KOG0211|consen 275 SEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD-DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSA-T 352 (759)
T ss_pred hhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcccc-C
Confidence 3466777776677789999999999998887643332 77788888999999999999998877766553332 1222 1
Q ss_pred hHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhc----CCCCH-HHHHHHHHhhccCChhHHHHHH
Q 000310 340 APQILTALCDRLLDFDENVRKQVVAVICDVACHAL----NSIPV-ETVKLVAERLRDKSVLVKRYTM 401 (1680)
Q Consensus 340 ~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l----~~V~~-elL~~LaeR~RDKK~~VR~eAm 401 (1680)
..+....+..-+.|..+.||.++-.-+..+++..- -.++. .+|-.+-.-+-|....||....
T Consensus 353 ~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a 419 (759)
T KOG0211|consen 353 RTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALA 419 (759)
T ss_pred cccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHh
Confidence 23677888889999999999998888888776322 33333 3557778888999999887643
No 143
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=51.29 E-value=7.3e+02 Score=32.98 Aligned_cols=121 Identities=16% Similarity=0.163 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccccchHhHHHHHHHhhcchhhhhhcc
Q 000310 604 EHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAAT 683 (1680)
Q Consensus 604 s~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v~~Li~lL~~~~~~~~~~aLkiLak~~k~~~e~~~~~ 683 (1680)
.|.......+...+++. ..-.-|-.++--.-+.||++=...+..+.++++|++..+.-.+++.|-.+++.-++..
T Consensus 20 ~~~~~y~~il~~~kg~~--k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v--- 94 (556)
T PF05918_consen 20 QHEEDYKEILDGVKGSP--KEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHV--- 94 (556)
T ss_dssp GGHHHHHHHHHGGGS-H--HHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-H---
T ss_pred cCHHHHHHHHHHccCCH--HHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHH---
Confidence 44554444443443322 2223455777778888899888888999999998877666667777765554422222
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHHHHHH
Q 000310 684 SSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLV 730 (1680)
Q Consensus 684 ~s~l~~~L~~lal~GtpkqAKyAVr~Laa~~~~~~~~~~~~L~~~L~ 730 (1680)
+.+..+|..+=....+.+....-++|+.+.+.+...++..|+..|.
T Consensus 95 -~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~ 140 (556)
T PF05918_consen 95 -SKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIE 140 (556)
T ss_dssp -HHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3456666666556666666555556555554433334444444444
No 144
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=49.91 E-value=7.6e+02 Score=32.80 Aligned_cols=195 Identities=22% Similarity=0.209 Sum_probs=112.9
Q ss_pred hHHHHHHHHHhhhhhhhcccCC-chHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHhcC-
Q 000310 122 RRVVILETLAKYRSCVVMLDLE-CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGR- 199 (1680)
Q Consensus 122 q~~~LLe~LA~vks~vl~~DL~-~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~vp~~vLd~IL~~l~~- 199 (1680)
+-+..|.++-++ .|.|.| ..+++...|.+++..+ +..-++|..-.+.||..+.+--..|...+-..++..+..
T Consensus 66 Ril~fl~~f~~Y----~~~~dpeg~~~V~~~~~h~lRg~-eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R 140 (885)
T COG5218 66 RILSFLKRFFEY----DMPDDPEGEELVAGTFYHLLRGT-ESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSER 140 (885)
T ss_pred HHHHHHHHHHHh----cCCCChhhhHHHHHHHHHHHhcc-cCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 444455544443 467777 5899999888877643 344567999889999988887777777777766655521
Q ss_pred --CCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHhhcchhhhhhhhhhcccccCCChH
Q 000310 200 --NKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLD 277 (1680)
Q Consensus 200 --~k~~~a~~lA~~v~~~~~dkL~~~I~qyf~~il~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~ 277 (1680)
.+..+.+.=|..+ -.||.++ . .+...+.-.++..+-+..|+ .+
T Consensus 141 ~~DRE~~VR~eAv~~------------L~~~Qe~-~-----~neen~~~n~l~~~vqnDPS-----------------~E 185 (885)
T COG5218 141 LFDREKAVRREAVKV------------LCYYQEM-E-----LNEENRIVNLLKDIVQNDPS-----------------DE 185 (885)
T ss_pred HhcchHHHHHHHHHH------------HHHHHhc-c-----CChHHHHHHHHHHHHhcCcH-----------------HH
Confidence 1111112112111 1223332 1 11223344466555555553 56
Q ss_pred HHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhH
Q 000310 278 TRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDEN 357 (1680)
Q Consensus 278 ~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEk 357 (1680)
+|..|.- +++. -++|+-.-|.|..|.+...|..+-+.+-.-+---.+.+....|. .+.--|.|-|..
T Consensus 186 VRr~all----ni~v--------dnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~-l~ewgl~dRe~s 252 (885)
T COG5218 186 VRRLALL----NISV--------DNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRIL-LMEWGLLDREFS 252 (885)
T ss_pred HHHHHHH----Heee--------CCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceeh-hhhhcchhhhhh
Confidence 7777642 2222 12467788999999999999877665432110000111111222 455568999999
Q ss_pred HHHHHHHHHHHh
Q 000310 358 VRKQVVAVICDV 369 (1680)
Q Consensus 358 VR~aaV~ai~~l 369 (1680)
||.|++.+|..-
T Consensus 253 v~~a~~d~ia~~ 264 (885)
T COG5218 253 VKGALVDAIASA 264 (885)
T ss_pred HHHHHHHHHHHH
Confidence 999999998543
No 145
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=49.17 E-value=7.7e+02 Score=32.65 Aligned_cols=316 Identities=18% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHHHccccCCCCCCHHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhcch-hhhcCCCcchHHHHHHHHHHHh
Q 000310 6 EQQLKEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQP-VLLKHQDKDVKLLVATCICEIT 84 (1680)
Q Consensus 6 ~~~l~~~g~kL~~~~~s~~eLlkrLk~L~~~Ls~~dQ~~~~~~~~sl~~~~~~Lv~~-~LL~HkD~~Vra~vAcCLadIl 84 (1680)
|-.+-.||+-+.+|.. +.|.+..-++---+-.+.-|+.--..+.-.-++-.+.+. .-.-++-..+-..|..|+--++
T Consensus 384 eaavmAfGSvm~gp~~--~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~ 461 (858)
T COG5215 384 EAAVMAFGSVMHGPCE--DCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLM 461 (858)
T ss_pred HHHHHHhhhhhcCccH--HHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhh
Q ss_pred hhcCCCCCCChhHHHHHHHHHHHhcc-CCCCCCCCChhhHHHHHHHH------------HhhhhhhhcccCC--chHHHH
Q 000310 85 RITAPEAPYSDDVLKDIFQLIVGTFS-GLKDTGGPSFGRRVVILETL------------AKYRSCVVMLDLE--CDELVN 149 (1680)
Q Consensus 85 RI~APdAPytd~qLkdIF~l~i~qf~-~L~d~~~p~f~q~~~LLe~L------------A~vks~vl~~DL~--~~~Li~ 149 (1680)
|-||-..--.--|.=|+.+|. .-.+..++.|+.|.-||..| +.+-.|--+.-|= |-+-+.
T Consensus 462 -----D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~ 536 (858)
T COG5215 462 -----DCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVS 536 (858)
T ss_pred -----ccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHH
Q ss_pred HHHHHHHHhhc----------------------CCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHhcCCCcHHHHH
Q 000310 150 EMYSTFFAVAS----------------------DDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARR 207 (1680)
Q Consensus 150 ~lF~~ff~~v~----------------------~~~~~~V~~~m~~IL~~vI~Ese~vp~~vLd~IL~~l~~~k~~~a~~ 207 (1680)
++.-.|++.+. .+.+.++...+..|+..-=...+.+...++...+..+...+..-++.
T Consensus 537 ~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~ 616 (858)
T COG5215 537 DILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFG 616 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhh
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHH
Q 000310 208 LAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVG 287 (1680)
Q Consensus 208 lA~~v~~~~~dkL~~~I~qyf~~il~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG 287 (1680)
=.---|..-+..|+..+.+|... .+|+|..-|.-.|-.+=.-|+.++|
T Consensus 617 dV~~aIsal~~sl~e~Fe~y~~~--------------------------------fiPyl~~aln~~d~~v~~~avglvg 664 (858)
T COG5215 617 DVYTAISALSTSLEERFEQYASK--------------------------------FIPYLTRALNCTDRFVLNSAVGLVG 664 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh--------------------------------hhHHHHHHhcchhHHHHHHHHHHHH
Q ss_pred HhhcCCCCCh-----------------hhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHh-------cCCCCCChHHH
Q 000310 288 DLFAVPGSAN-----------------NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLL-------TDPSRADAPQI 343 (1680)
Q Consensus 288 ~mfs~~~s~~-----------------a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~-------~~p~~~~~~ei 343 (1680)
++--.-+.+| ...|+++=-+-|+-|.|+.-.|-..+..+.-.|.. ..|+.++
T Consensus 665 dlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~~---- 740 (858)
T COG5215 665 DLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSDE---- 740 (858)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCc----
Q ss_pred HHHHHhhhCCChhHHHHHHHHHHHHh
Q 000310 344 LTALCDRLLDFDENVRKQVVAVICDV 369 (1680)
Q Consensus 344 i~~L~~rL~D~DEkVR~aaV~ai~~l 369 (1680)
--..|.-.++|..++.++..+
T Consensus 741 -----~~~~dy~~~~~~~v~~ayVgI 761 (858)
T COG5215 741 -----VYVDDYRKNAVQLVNCAYVGI 761 (858)
T ss_pred -----eeHHHHHHHHHHHHHHHHHHh
No 146
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.73 E-value=1.1e+02 Score=37.36 Aligned_cols=162 Identities=13% Similarity=0.113 Sum_probs=115.7
Q ss_pred hHHHHHHHHHhhcchhhhh----hhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhH
Q 000310 244 DYHEVIYDVYRCSPQILSG----VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAV 319 (1680)
Q Consensus 244 ~~h~Li~eL~~~~P~lL~~----ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~V 319 (1680)
+.-..|..|-.+.|+.|.+ ||.++-.+|+.-.-.+=..|+.++++||+.-+..+.+.-..+-...|.|..+-..=|
T Consensus 107 dgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFv 186 (334)
T KOG2933|consen 107 DGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFV 186 (334)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHH
Confidence 4456677777777776554 889999999999999999999999999998766666777888889999988877888
Q ss_pred HHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCC------CCHHHHHHHHHhhccCC
Q 000310 320 RMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS------IPVETVKLVAERLRDKS 393 (1680)
Q Consensus 320 R~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~------V~~elL~~LaeR~RDKK 393 (1680)
|...-++.-... +|-. ..-++..|.-.+.-+..+||..++..+.... ..+.. ...++...+++-++||=
T Consensus 187 reda~kAL~aMV-~~vt---p~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v-~rl~v~~~~~~~~~dl~~a~~~~~~d~L 261 (334)
T KOG2933|consen 187 REDAEKALVAMV-NHVT---PQKLLRKLIPILQHSNPRVRAKAALCFSRCV-IRLGVLPVLLQGSCDLSRAAQEQGSDKL 261 (334)
T ss_pred HHHHHHHHHHHH-hccC---hHHHHHHHHHHHhhhchhhhhhhhccccccc-eeccccchhhHhHHHHHHHHHhhhcccc
Confidence 887777665433 2221 2457888888899999999998544431111 11111 12345678999999999
Q ss_pred hhHHHHHHHHHHHHHHH
Q 000310 394 VLVKRYTMERLADIFRG 410 (1680)
Q Consensus 394 ~~VR~eAm~~La~LY~~ 410 (1680)
+.+|+.|=-.+..+..+
T Consensus 262 p~~~~~a~~~~~~~~~v 278 (334)
T KOG2933|consen 262 PELREAARFVRLELKEV 278 (334)
T ss_pred cccccchhHHHHhHHHH
Confidence 99996554444444443
No 147
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.06 E-value=1.4e+02 Score=38.81 Aligned_cols=169 Identities=17% Similarity=0.165 Sum_probs=104.5
Q ss_pred hhcccccCCChHHHHHHHHHHHHhhcCCC---CChhhh--cHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCC---
Q 000310 266 YLTGELLTDQLDTRLKAVGLVGDLFAVPG---SANNEQ--FHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR--- 337 (1680)
Q Consensus 266 ~Le~EL~sed~~~Rl~At~llG~mfs~~~---s~~a~~--y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~--- 337 (1680)
.+-..+.+++...++.|+..+-++++... .+.+-. -=+.+..||+| |..+.+|.+..=++.+|-.-....
T Consensus 70 ~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~--~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 70 LMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSR--DDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHcc--CCChhHHHHHHHHHHHHhcCchhhccc
Confidence 33344668999999999999999999753 222211 23456778875 456777777666666655422211
Q ss_pred CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCC----CCHHHHHHHHHhh-ccCChhHHHHHHHHHHHHHHHhh
Q 000310 338 ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS----IPVETVKLVAERL-RDKSVLVKRYTMERLADIFRGCC 412 (1680)
Q Consensus 338 ~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~----V~~elL~~LaeR~-RDKK~~VR~eAm~~La~LY~~~~ 412 (1680)
-.....+..|...|..+++.||-+||=+++.+|-..... +.-..+..|..-+ .+.+....+.++=+|.+|.+.-
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk- 226 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK- 226 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCC-
Confidence 011134567899999999999999999999998755331 2223333333322 2333466777777777776642
Q ss_pred hhccCCCcchhccccchHHHhhhhccCCC
Q 000310 413 LRNFNGSINQNEFEWIPGKILRCLYDKDF 441 (1680)
Q Consensus 413 ~~~~~g~~~~~~~~wIPs~IL~~~Y~nD~ 441 (1680)
+.+.....+.-|=..|+.+.|..|.
T Consensus 227 ----~P~P~~~~v~~iLp~L~~ll~~~D~ 251 (514)
T KOG0166|consen 227 ----NPSPPFDVVAPILPALLRLLHSTDE 251 (514)
T ss_pred ----CCCCcHHHHHHHHHHHHHHHhcCCH
Confidence 1223335566666677777777664
No 148
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=46.92 E-value=1.1e+02 Score=40.03 Aligned_cols=130 Identities=17% Similarity=0.115 Sum_probs=89.4
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHH--HH----hhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHH
Q 000310 272 LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSE--FL----KRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILT 345 (1680)
Q Consensus 272 ~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~--fL----~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~ 345 (1680)
..-+..+|..++.-++.-... +|+.|.. || .=..|.+..||...++-...+...+|...-..+..+
T Consensus 285 ~Dv~d~IRv~c~~~L~dwi~l--------vP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~e 356 (740)
T COG5537 285 IDVDDVIRVLCSMSLRDWIGL--------VPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVE 356 (740)
T ss_pred cchhHHHHHHHHHHHHHHHhc--------chHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 345678899999998877753 3444331 11 125799999999999999888887887554456665
Q ss_pred HHHhh-----hCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChh---HHHHHHHHHHHHHHHhh
Q 000310 346 ALCDR-----LLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVL---VKRYTMERLADIFRGCC 412 (1680)
Q Consensus 346 ~L~~r-----L~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~---VR~eAm~~La~LY~~~~ 412 (1680)
-+..| ..|.|= ||..+++..|.+.. +-.++..-+-.+.-.|-|=++. +|.++...++++-....
T Consensus 357 RFk~rILE~~r~D~d~-VRi~sik~l~~lr~--lg~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK~~aevi 428 (740)
T COG5537 357 RFKDRILEFLRTDSDC-VRICSIKSLCYLRI--LGVLSSSEILIVSSCMLDIIPDSRENIVESVESICKIDAEVI 428 (740)
T ss_pred HHHHHHHHHHhhccch-hhHHHHHHHHHHHH--hcccchhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHH
Confidence 55554 578888 99999999877543 3344444444444558887776 77788877777766644
No 149
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=46.39 E-value=7.6e+02 Score=31.78 Aligned_cols=64 Identities=16% Similarity=0.095 Sum_probs=39.8
Q ss_pred CCCcchHHHHHHHHHHHhhhcCCC-CCCChhHH---HHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhh
Q 000310 67 HQDKDVKLLVATCICEITRITAPE-APYSDDVL---KDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYR 134 (1680)
Q Consensus 67 HkD~~Vra~vAcCLadIlRI~APd-APytd~qL---kdIF~l~i~qf~~L~d~~~p~f~q~~~LLe~LA~vk 134 (1680)
-...++..|+-.-|.|+++- .|. +++--+.. .++|.-|+..|. ..+.+-....+++|..+....
T Consensus 65 ~~~~d~vqyvL~Li~dll~~-~~~~~~~f~~~~~~~~~~~~~fl~lL~---~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 65 IDKDDTVRYVLTLIDDMLQE-DDTRVKLFHDDALLKKKTWEPFFNLLN---RQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred cCcHHHHHHHHHHHHHHHHh-chHHHHHHHHHhhccccchHHHHHHHc---CCchhHHHHHHHHHHHHHhcC
Confidence 35577999999999999997 222 11111111 456777777543 345555666777777776543
No 150
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=46.31 E-value=1.3e+02 Score=34.10 Aligned_cols=98 Identities=14% Similarity=0.149 Sum_probs=71.9
Q ss_pred ccCCChHHHHHHHHHHHHhhcCCCC-------------Ch-----------hhhcHHHHHHHHhhhcCCChhHHHHHHHH
Q 000310 271 LLTDQLDTRLKAVGLVGDLFAVPGS-------------AN-----------NEQFHSVFSEFLKRLTDRIVAVRMSVLEH 326 (1680)
Q Consensus 271 L~sed~~~Rl~At~llG~mfs~~~s-------------~~-----------a~~y~~~w~~fL~R~~D~s~~VR~~~ve~ 326 (1680)
|...+..+|..|..++.-|+.+... +| .+-|..+.... -...++.+=.+++++
T Consensus 49 l~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L---~~E~~~~~l~q~lK~ 125 (182)
T PF13251_consen 49 LKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLAL---QAEKSPPVLTQLLKC 125 (182)
T ss_pred HcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHH---hcccccHHHHHHHHH
Confidence 4567899999999999999977521 11 23344444333 234567788899999
Q ss_pred hHHHHhcCCCC----CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhh
Q 000310 327 VKSCLLTDPSR----ADAPQILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1680)
Q Consensus 327 ~~~iL~~~p~~----~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~ 371 (1680)
+...+.+.|+. .....++..+..++...|..||.++.-+++.+..
T Consensus 126 la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 126 LAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 98888887863 4456777889999999999999998888876643
No 151
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=45.98 E-value=6.8e+02 Score=31.11 Aligned_cols=88 Identities=14% Similarity=0.206 Sum_probs=57.9
Q ss_pred hhcccccCCChHHHHHHHHHHHHhhcCCC-CChhhhc---HHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCC-Ch
Q 000310 266 YLTGELLTDQLDTRLKAVGLVGDLFAVPG-SANNEQF---HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRA-DA 340 (1680)
Q Consensus 266 ~Le~EL~sed~~~Rl~At~llG~mfs~~~-s~~a~~y---~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~-~~ 340 (1680)
....-|.++|=-+|..++++||+++..+. .+++..| |+-....+.=..|++..||.+...-- .+..+||... .+
T Consensus 213 ~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvF-KvFVANp~K~~~I 291 (335)
T PF08569_consen 213 KYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVF-KVFVANPNKPPPI 291 (335)
T ss_dssp HHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHH-HHHHH-SS-BHHH
T ss_pred HHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHH-HHHHhCCCCChHH
Confidence 34455778999999999999999999864 2334444 88888899999999999999986554 4555667532 11
Q ss_pred --------HHHHHHHHhhhCCC
Q 000310 341 --------PQILTALCDRLLDF 354 (1680)
Q Consensus 341 --------~eii~~L~~rL~D~ 354 (1680)
.-++..|.+-..|.
T Consensus 292 ~~iL~~Nr~kLl~fl~~f~~~~ 313 (335)
T PF08569_consen 292 VDILIKNREKLLRFLKDFHTDR 313 (335)
T ss_dssp HHHHHHTHHHHHHHHHTTTTT-
T ss_pred HHHHHHHHHHHHHHHHhCCCCC
Confidence 13345555556666
No 152
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=44.48 E-value=1.6e+02 Score=36.06 Aligned_cols=107 Identities=16% Similarity=0.204 Sum_probs=72.3
Q ss_pred HHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHH
Q 000310 251 DVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSC 330 (1680)
Q Consensus 251 eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~i 330 (1680)
.|.-+.+.+|.+++|-||+| +.+.=..+.+++-.+-..-+.. .-|..+|.+.+ .+|.+|...+.++..-
T Consensus 131 ~L~p~l~~li~slLpGLede----~sE~~~~~~~ll~~l~~~v~~~--~F~~~lwl~ii-----~sp~~Rl~al~~l~~~ 199 (307)
T PF04118_consen 131 ALRPCLKGLILSLLPGLEDE----GSEFFDRTLKLLDKLKEAVGDK--YFWQCLWLCII-----TSPSRRLGALNYLLRR 199 (307)
T ss_pred HHHHHHHHHHHHhccccccC----CchHHHHHHHHHHHHHHhcChh--HHHHHHHHHHh-----cCcchhHHHHHHHHHh
Confidence 56678888999999999985 3333344445555444432322 34567888877 6899999988887654
Q ss_pred HhcCC--------------CCCChHHHHHHHHhhhCCChhHHHHHHHHHHHH
Q 000310 331 LLTDP--------------SRADAPQILTALCDRLLDFDENVRKQVVAVICD 368 (1680)
Q Consensus 331 L~~~p--------------~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~ 368 (1680)
+-... -..+..-++.+|+..|.|.+.-|++.+...+..
T Consensus 200 l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~ 251 (307)
T PF04118_consen 200 LPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLS 251 (307)
T ss_pred CCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 43211 012234577999999999999999997777644
No 153
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=42.60 E-value=1.3e+02 Score=38.41 Aligned_cols=46 Identities=13% Similarity=0.187 Sum_probs=34.2
Q ss_pred cccccceEEEecCCCCceEEEEEEEecCCC------CeeEEEccCCc---ceeee
Q 000310 1377 EDLIGYRIKVWWPMDKQFYEGTIKSYDPIK------KKHVILYDDED---VEVLR 1422 (1680)
Q Consensus 1377 ~~lvG~rv~V~Wp~D~~~Y~G~V~~y~~~~------~~H~v~YdDgd---~E~l~ 1422 (1680)
.--||.+|.++|..|..||.++|....... ...-|.|..=+ .||+.
T Consensus 53 ~~~VGekVla~~~~Dg~~~~A~VI~~R~~~~~~~~~~~YYVHY~g~nrRlDEWV~ 107 (450)
T PLN00104 53 PLEVGTRVMCRWRFDGKYHPVKVIERRRGGSGGPNDYEYYVHYTEFNRRLDEWVK 107 (450)
T ss_pred eeccCCEEEEEECCCCCEEEEEEEEEeccCCCCCCCceEEEEEecCCccHhhccC
Confidence 335999999999999999999999988632 35677775333 35554
No 154
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=42.14 E-value=15 Score=48.99 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=17.8
Q ss_pred ChhhHhHhHHHHHHHHHHhhhc
Q 000310 843 SSVDKAHLRLASAKAVLRLSRQ 864 (1680)
Q Consensus 843 p~~~ksrLRLaAa~~lLKLAr~ 864 (1680)
|....--+|-.|.+.|+-|||.
T Consensus 753 P~t~aD~IRalAc~~L~GLaR~ 774 (1516)
T KOG1832|consen 753 PPTTADCIRALACRVLLGLARD 774 (1516)
T ss_pred CCCcHHHHHHHHHHHHhccccC
Confidence 5667777888899999999875
No 155
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=41.88 E-value=9.9e+02 Score=31.80 Aligned_cols=186 Identities=15% Similarity=0.015 Sum_probs=110.2
Q ss_pred HHHHHhhcchhhhhhhhhhcccccCC-ChHHHHHHHHHHHHhhcCCCCChhhhc-HHHHHHHHhhhcCCChhHHHHHHHH
Q 000310 249 IYDVYRCSPQILSGVVPYLTGELLTD-QLDTRLKAVGLVGDLFAVPGSANNEQF-HSVFSEFLKRLTDRIVAVRMSVLEH 326 (1680)
Q Consensus 249 i~eL~~~~P~lL~~ViP~Le~EL~se-d~~~Rl~At~llG~mfs~~~s~~a~~y-~~~w~~fL~R~~D~s~~VR~~~ve~ 326 (1680)
.--+.+.--+...+.+|-.|+-|.+. +.-.|-..+-+.|-+- .+. .....- ...-..|+.-..=.++.||.++..+
T Consensus 42 ~~~~~~~~~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a-~~~-~~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~ 119 (569)
T KOG1242|consen 42 EAAINQHGDQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLA-FHL-QIVDPRPISIIEILLEELDTPSKSVQRAVSTC 119 (569)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHH-Hhc-cccCcchhHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 33445566677777888888888765 4666666666666432 211 111111 2233467777778999999999999
Q ss_pred hHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh--cCCCCHHHHHHHHHhhccCChhHHHHHHHHH
Q 000310 327 VKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA--LNSIPVETVKLVAERLRDKSVLVKRYTMERL 404 (1680)
Q Consensus 327 ~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~--l~~V~~elL~~LaeR~RDKK~~VR~eAm~~L 404 (1680)
.+....+.- ......+.+-+.+.+.=++-.=|..+-..+.-+..-. ....+..++..+..-++||+..-|++ ...+
T Consensus 120 l~~~~~~~~-~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re-~~~~ 197 (569)
T KOG1242|consen 120 LPPLVVLSK-GLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNRE-AALL 197 (569)
T ss_pred hhhHHHHhh-ccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHH-HHHH
Confidence 887665432 2223456666666666555566666655555444322 23446678899999999999988888 3333
Q ss_pred HHHHHHhhhhccCCCcchhccccchHHHhhhhccCCCC
Q 000310 405 ADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFG 442 (1680)
Q Consensus 405 a~LY~~~~~~~~~g~~~~~~~~wIPs~IL~~~Y~nD~~ 442 (1680)
+-.+ ++... |+....-+--+-..||.|+|+....
T Consensus 198 a~~~--~~~~L--g~~~EPyiv~~lp~il~~~~d~~~~ 231 (569)
T KOG1242|consen 198 AFEA--AQGNL--GPPFEPYIVPILPSILTNFGDKINK 231 (569)
T ss_pred HHHH--HHHhc--CCCCCchHHhhHHHHHHHhhccchh
Confidence 3222 22221 2211122334445677788876644
No 156
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=41.30 E-value=3e+02 Score=34.18 Aligned_cols=96 Identities=16% Similarity=0.145 Sum_probs=63.8
Q ss_pred cccCCChHHHHHHHHHHHHhhcCCC-C--Chhh--hcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHH-
Q 000310 270 ELLTDQLDTRLKAVGLVGDLFAVPG-S--ANNE--QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQI- 343 (1680)
Q Consensus 270 EL~sed~~~Rl~At~llG~mfs~~~-s--~~a~--~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~ei- 343 (1680)
.|.+.+..+|..|+.+||.++.... + .+.. .-+.+...+- .|.+..+|...+=++...|.+++.+ ..+.
T Consensus 132 ~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls---~~~~~~~r~kaL~AissLIRn~~~g--~~~fl 206 (342)
T KOG2160|consen 132 YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILS---SDDPNTVRTKALFAISSLIRNNKPG--QDEFL 206 (342)
T ss_pred HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHc---cCCCchHHHHHHHHHHHHHhcCcHH--HHHHH
Confidence 6778999999999999999998642 1 1111 1234444443 6778889999999999888888743 1222
Q ss_pred ----HHHHHhhhCCChhHHHHH--HHHHHHHhh
Q 000310 344 ----LTALCDRLLDFDENVRKQ--VVAVICDVA 370 (1680)
Q Consensus 344 ----i~~L~~rL~D~DEkVR~a--aV~ai~~la 370 (1680)
+..|.+.|...+..||.. |+.-|..+.
T Consensus 207 ~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll 239 (342)
T KOG2160|consen 207 KLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLL 239 (342)
T ss_pred hcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence 357888888865555555 344444433
No 157
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=41.17 E-value=1.2e+02 Score=40.70 Aligned_cols=88 Identities=18% Similarity=0.202 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHH-HHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChh
Q 000310 278 TRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMS-VLEHVKSCLLTDPSRADAPQILTALCDRLLDFDE 356 (1680)
Q Consensus 278 ~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~-~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DE 356 (1680)
.|=+|+-+---||+..+ ...++.++.+ .|++|-+|.. |...+-...-+- ...-|-.-|.--..|.++
T Consensus 502 ~RGl~vGiaL~~ygrqe-----~Ad~lI~el~---~dkdpilR~~Gm~t~alAy~GTg----nnkair~lLh~aVsD~nD 569 (929)
T KOG2062|consen 502 IRGLAVGIALVVYGRQE-----DADPLIKELL---RDKDPILRYGGMYTLALAYVGTG----NNKAIRRLLHVAVSDVND 569 (929)
T ss_pred HHHHHHhHHHHHhhhhh-----hhHHHHHHHh---cCCchhhhhhhHHHHHHHHhccC----chhhHHHhhcccccccch
Confidence 45666655555565443 2223444433 4678888876 333322222221 112344444455678888
Q ss_pred HHHHHHHHHHHHhhhhhcCCC
Q 000310 357 NVRKQVVAVICDVACHALNSI 377 (1680)
Q Consensus 357 kVR~aaV~ai~~la~~~l~~V 377 (1680)
.||++||.+|+-+.+..++.+
T Consensus 570 DVrRaAVialGFVl~~dp~~~ 590 (929)
T KOG2062|consen 570 DVRRAAVIALGFVLFRDPEQL 590 (929)
T ss_pred HHHHHHHHHheeeEecChhhc
Confidence 888888888877666665544
No 158
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=40.70 E-value=2e+02 Score=35.39 Aligned_cols=137 Identities=20% Similarity=0.297 Sum_probs=0.0
Q ss_pred hhhhcccccCCChHHHHHHHHHHHHhhcCCCCC-----hhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcC-CCC
Q 000310 264 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA-----NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD-PSR 337 (1680)
Q Consensus 264 iP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~-----~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~-p~~ 337 (1680)
+|+|...|-++|.+.-+.||--+-+++|...+. +..---+-|.+|+. ++--.|+++-..-.++| .++
T Consensus 73 lp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~-------~~q~~mlqfEAaWalTNiaSG 145 (526)
T COG5064 73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMD-------EIQRDMLQFEAAWALTNIASG 145 (526)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHH-------hcchhHHHHHHHHHHhhhccC
Q ss_pred CChH-------HHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcC---------------------CCCHHHHH----HH
Q 000310 338 ADAP-------QILTALCDRLLDFDENVRKQVVAVICDVACHALN---------------------SIPVETVK----LV 385 (1680)
Q Consensus 338 ~~~~-------eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~---------------------~V~~elL~----~L 385 (1680)
.-.+ .-+..+...|.++...||-++|=+++.+|-.+.. .+..++++ +|
T Consensus 146 tt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtL 225 (526)
T COG5064 146 TTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTL 225 (526)
T ss_pred cccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHH
Q ss_pred HHhhccCCh----hHHHHHHHHHHHH
Q 000310 386 AERLRDKSV----LVKRYTMERLADI 407 (1680)
Q Consensus 386 aeR~RDKK~----~VR~eAm~~La~L 407 (1680)
...+|-|++ .+=..|+..|++|
T Consensus 226 SNlcRGknP~P~w~~isqalpiL~KL 251 (526)
T COG5064 226 SNLCRGKNPPPDWSNISQALPILAKL 251 (526)
T ss_pred HHhhCCCCCCCchHHHHHHHHHHHHH
No 159
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=40.28 E-value=6.6e+02 Score=29.33 Aligned_cols=70 Identities=23% Similarity=0.255 Sum_probs=48.2
Q ss_pred HHHHHhhcchhhhhhhhhhcccc-cCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHHH
Q 000310 249 IYDVYRCSPQILSGVVPYLTGEL-LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 325 (1680)
Q Consensus 249 i~eL~~~~P~lL~~ViP~Le~EL-~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve 325 (1680)
+.++-+..|+-=..+++.|..=| ..+++..+..|++.+.-+.... +-.+..+|+...+++ +-+-|-.+++
T Consensus 108 ~~~ic~~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~----vvd~~s~w~vl~~~l---~~~~rp~v~~ 178 (234)
T PF12530_consen 108 IRDICCSRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE----VVDFYSAWKVLQKKL---SLDYRPLVLK 178 (234)
T ss_pred HHHHHHhChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh----hccHHHHHHHHHHhc---CCccchHHHH
Confidence 44445555554444555566656 7899999999999999999543 456677999999888 3344444444
No 160
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.90 E-value=1.2e+02 Score=40.47 Aligned_cols=120 Identities=22% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHhh------cchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhH
Q 000310 246 HEVIYDVYRC------SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAV 319 (1680)
Q Consensus 246 h~Li~eL~~~------~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~V 319 (1680)
|.+++|.-.. .|+++...+-+|-.-|.+-+..+|-+|.+.+.+|.+...+.=+..|. .=.-+..=..+++++|
T Consensus 307 naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h-~d~Ii~sLkterDvSi 385 (938)
T KOG1077|consen 307 NAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH-QDTIINSLKTERDVSI 385 (938)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH-HHHHHHHhccccchHH
Q ss_pred HHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhh
Q 000310 320 RMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVA 370 (1680)
Q Consensus 320 R~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la 370 (1680)
|...|+. |-.-.++.-+.+|+..|..-|--.|--+|-+.|--+.=+|
T Consensus 386 rrravDL----LY~mcD~~Nak~IV~elLqYL~tAd~sireeivlKvAILa 432 (938)
T KOG1077|consen 386 RRRAVDL----LYAMCDVSNAKQIVAELLQYLETADYSIREEIVLKVAILA 432 (938)
T ss_pred HHHHHHH----HHHHhchhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
No 161
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=39.80 E-value=1.2e+02 Score=35.98 Aligned_cols=135 Identities=14% Similarity=0.150 Sum_probs=74.0
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhC
Q 000310 273 TDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLL 352 (1680)
Q Consensus 273 sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~ 352 (1680)
++|+.++..|+-++|..-+.+...-.-..-..-.-..+-..|.++.||...+.+..++=.+......++.-+..+++...
T Consensus 24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~ 103 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETV 103 (254)
T ss_pred CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHh
Confidence 67899999999999986554421111111122234566778899999987777765422211111122233445555433
Q ss_pred C--ChhHHHHHHHHHHHHhhhhh-cCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000310 353 D--FDENVRKQVVAVICDVACHA-LNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1680)
Q Consensus 353 D--~DEkVR~aaV~ai~~la~~~-l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~L 407 (1680)
. .|..|..++.+.++.++... .+.+=...+..+...+.-=...+|..++..|..|
T Consensus 104 s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 104 SSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred cCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 3 36778888888888876432 1111111222222223333456777777766655
No 162
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=38.93 E-value=64 Score=44.50 Aligned_cols=16 Identities=19% Similarity=-0.016 Sum_probs=10.2
Q ss_pred CchhhhHHHHhhccCC
Q 000310 959 YPEYIIPYLVHTFAHH 974 (1680)
Q Consensus 959 ~pEy~LprLIHlLAHH 974 (1680)
.-||+|+-+.--=.|.
T Consensus 1213 K~e~iF~~fn~de~hN 1228 (3015)
T KOG0943|consen 1213 KEEDIFMGFNCDEGHN 1228 (3015)
T ss_pred hhhhhccccccCCCCC
Confidence 3477777666656666
No 163
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=38.15 E-value=19 Score=48.05 Aligned_cols=22 Identities=32% Similarity=0.241 Sum_probs=15.4
Q ss_pred hhcccccccCccccccCCCCCC
Q 000310 1182 REINLDNLGVLNKFESSNGHKH 1203 (1680)
Q Consensus 1182 ~~~~~~~~~~~~~~~~~~~~~~ 1203 (1680)
-||-+=|+-.-..-++-|+|-+
T Consensus 1123 Geik~~nv~sG~~e~s~ncH~S 1144 (1516)
T KOG1832|consen 1123 GEIKIFNVSSGSMEESVNCHQS 1144 (1516)
T ss_pred ceEEEEEccCcccccccccccc
Confidence 4666666667777788888843
No 164
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=37.86 E-value=70 Score=40.03 Aligned_cols=112 Identities=16% Similarity=0.181 Sum_probs=77.3
Q ss_pred hhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHH-HHHHHhhhcCCCh---hHHHHHHHHhHHHHhcCCCC-
Q 000310 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSV-FSEFLKRLTDRIV---AVRMSVLEHVKSCLLTDPSR- 337 (1680)
Q Consensus 263 ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~-w~~fL~R~~D~s~---~VR~~~ve~~~~iL~~~p~~- 337 (1680)
.++.+..-|.+++..+|..|-+.+--++++.. +.+..-.+ -..|+-|.-|++- .=|.+.++.+..++.-.-..
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~--~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~ 103 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEE--SLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK 103 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHH--HHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc
Confidence 33444445667789999999999999998763 22222111 2245666666544 34788888888887752111
Q ss_pred CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCC
Q 000310 338 ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS 376 (1680)
Q Consensus 338 ~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~ 376 (1680)
..-.-++.++....-++||+.|..+++.+|+++..++..
T Consensus 104 ~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~l 142 (371)
T PF14664_consen 104 EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPEL 142 (371)
T ss_pred cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHH
Confidence 122467788888888899999999999999999887664
No 165
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=37.73 E-value=2.8e+02 Score=37.13 Aligned_cols=148 Identities=15% Similarity=0.132 Sum_probs=96.9
Q ss_pred cchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCC
Q 000310 256 SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDP 335 (1680)
Q Consensus 256 ~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p 335 (1680)
.++.-..++|.|-.-+.+-|..+|+.-.+-+-+.+..-. =-.....+|-.+..=|+|.++.+|..-|++...+.-.-.
T Consensus 324 ~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt--~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~ 401 (690)
T KOG1243|consen 324 EEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLT--KQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS 401 (690)
T ss_pred ccccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcC--HHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc
Confidence 444667788999988999999999887666654443211 112445788899999999999999999988865443222
Q ss_pred CCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHh-hccCChhHHHHHHHHHH
Q 000310 336 SRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAER-LRDKSVLVKRYTMERLA 405 (1680)
Q Consensus 336 ~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR-~RDKK~~VR~eAm~~La 405 (1680)
.+..-.|++++|.+.-.|.+-.+|.-++..++.++...-..+-..+|-.---| +||-=..=|..++..|+
T Consensus 402 ~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~ 472 (690)
T KOG1243|consen 402 KRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALA 472 (690)
T ss_pred hhhhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHh
Confidence 22345689999999888999999998877777766542111111122111223 55555555555544443
No 166
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=37.07 E-value=1.5e+02 Score=36.23 Aligned_cols=87 Identities=18% Similarity=0.221 Sum_probs=66.8
Q ss_pred HHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhh-CCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHH
Q 000310 319 VRMSVLEHVKSCLLTDPSRADAPQILTALCDRL-LDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVK 397 (1680)
Q Consensus 319 VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL-~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR 397 (1680)
=|+.+++....+ |.......|+++|...+ -+..|.+..+.+.+++.-....-..+|..++..+..=+.|||+.||
T Consensus 3 ~r~~~~~~L~~l----~~~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR 78 (339)
T PF12074_consen 3 QRVLHASMLSSL----PSSSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVR 78 (339)
T ss_pred HHHHHHHHHHhC----CCcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHH
Confidence 355555554432 22235678888888876 4599999999999997743333378899999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 000310 398 RYTMERLADIFR 409 (1680)
Q Consensus 398 ~eAm~~La~LY~ 409 (1680)
+.-+..++.++.
T Consensus 79 ~~w~~~~~~~~~ 90 (339)
T PF12074_consen 79 RAWLLCLGEALW 90 (339)
T ss_pred HHHHHHHHHHHh
Confidence 999999999877
No 167
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=36.95 E-value=2.3e+02 Score=34.79 Aligned_cols=129 Identities=21% Similarity=0.273 Sum_probs=85.9
Q ss_pred ChHHHHH---HHHHHHHhhcCC-CCChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCCh--------HH
Q 000310 275 QLDTRLK---AVGLVGDLFAVP-GSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADA--------PQ 342 (1680)
Q Consensus 275 d~~~Rl~---At~llG~mfs~~-~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~--------~e 342 (1680)
|+..|-. .|..|-|+|... |..++..|....+.=| ..| +..|.+..++.++-||.+. +.... .+
T Consensus 53 NenhrekttlcVscLERLfkakegahlapnlmpdLQrGL--iad-dasVKiLackqigcilEdc-DtnaVseillvvNae 128 (524)
T KOG4413|consen 53 NENHREKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGL--IAD-DASVKILACKQIGCILEDC-DTNAVSEILLVVNAE 128 (524)
T ss_pred cccccchhhhHHHHHHHHHhhccchhhchhhhHHHHhcc--cCC-cchhhhhhHhhhhHHHhcC-chhhHHHHHHHhhhh
Confidence 4444444 788899999765 5667777766665433 334 7788888888887766543 32222 25
Q ss_pred HHHHHHhhhCCChhHHHHHHHHHHHHhhhh--hcCCC-CHH-----HHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000310 343 ILTALCDRLLDFDENVRKQVVAVICDVACH--ALNSI-PVE-----TVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1680)
Q Consensus 343 ii~~L~~rL~D~DEkVR~aaV~ai~~la~~--~l~~V-~~e-----lL~~LaeR~RDKK~~VR~eAm~~La~LY~~ 410 (1680)
|.+.+..++.-.|+.|-.+|++.|..++.+ .++.+ +.+ -+..|+.|+-| -+|-...+.+-++|..
T Consensus 129 ilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcnd---iaRvRVleLIieifSi 201 (524)
T KOG4413|consen 129 ILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCND---IARVRVLELIIEIFSI 201 (524)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhh---HHHHHHHHHHHHHHhc
Confidence 667888899999999999999999998863 23322 223 34566777744 4565566666666664
No 168
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.16 E-value=5.1e+02 Score=32.41 Aligned_cols=147 Identities=15% Similarity=0.167 Sum_probs=107.4
Q ss_pred hhhhhhhcccccCCChHHHHHHHHHHHHhhcCCC--CChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCC
Q 000310 261 SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG--SANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRA 338 (1680)
Q Consensus 261 ~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~--s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~ 338 (1680)
.+-+|.|-.-|.+.|.++|--+|..+|.+--... --++++-|-+-.+...=+.|-++.|.++..-+... |.+.. .
T Consensus 207 aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrn-lasdt--~ 283 (550)
T KOG4224|consen 207 AGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRN-LASDT--E 283 (550)
T ss_pred cCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhh-hcccc--h
Confidence 3578888889999999999999999997654421 23678888899999999999999998887666643 33221 1
Q ss_pred ChHHHH-----HHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCC---HHHHHHHHHhhccCChh-HHHHHHHHHHHHHH
Q 000310 339 DAPQIL-----TALCDRLLDFDENVRKQVVAVICDVACHALNSIP---VETVKLVAERLRDKSVL-VKRYTMERLADIFR 409 (1680)
Q Consensus 339 ~~~eii-----~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~---~elL~~LaeR~RDKK~~-VR~eAm~~La~LY~ 409 (1680)
-..+|+ ..+-+.|.|+--..=++.|..|..++.+.+..++ .-+|+-|...+|=+... +...|..+|-+|-.
T Consensus 284 Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAa 363 (550)
T KOG4224|consen 284 YQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAA 363 (550)
T ss_pred hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhh
Confidence 223444 5677778888888888999999888888887654 34666666666666554 88888877766644
Q ss_pred H
Q 000310 410 G 410 (1680)
Q Consensus 410 ~ 410 (1680)
.
T Consensus 364 s 364 (550)
T KOG4224|consen 364 S 364 (550)
T ss_pred h
Confidence 3
No 169
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.82 E-value=1e+02 Score=40.67 Aligned_cols=52 Identities=12% Similarity=0.029 Sum_probs=45.1
Q ss_pred HHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhh
Q 000310 321 MSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACH 372 (1680)
Q Consensus 321 ~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~ 372 (1680)
..+++||-.++...|+......|+.++-..+.|+..-||...|.+|..+...
T Consensus 303 ~vav~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~ 354 (704)
T KOG2153|consen 303 QVAVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFEN 354 (704)
T ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcC
Confidence 4688899898888888777789999999999999999999999998877653
No 170
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=35.08 E-value=6.6e+02 Score=34.99 Aligned_cols=194 Identities=19% Similarity=0.215 Sum_probs=115.7
Q ss_pred HHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhcccCCc--hHHHHHHHHHHHHhhcCCChhhHHHHHHHHH
Q 000310 98 LKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLEC--DELVNEMYSTFFAVASDDHPESVLSSMQTIM 175 (1680)
Q Consensus 98 LkdIF~l~i~qf~~L~d~~~p~f~q~~~LLe~LA~vks~vl~~DL~~--~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL 175 (1680)
|..-|.+...-|.+-+|...|.|...-+.|+- | |+|+-+.. ..+..+ + -+-+++......+|=
T Consensus 1036 L~~~~~f~~~vFs~sgd~g~~~f~~s~r~l~~-----S-v~~~~i~~~~~l~~LR----~-----~n~~~~~~~~vSdik 1100 (1525)
T COG5219 1036 LGENHHFVEKVFSLSGDLGLPSFRCSDRKLEQ-----S-VLLERIGPRAILYVLR----K-----HNVPPQFVASVSDIK 1100 (1525)
T ss_pred HhhhhhhhhhheecccccCccHHHHHHHHHHh-----h-HhhccCCchHHHHHHH----H-----ccCcHHHHHhhccch
Confidence 45555555666766666666666655555542 1 22232221 111111 1 122445555556666
Q ss_pred HHHhcccccccHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHhhhhhHHHHHHHHHH---hhcCCCCCCCCchhHHHH
Q 000310 176 IVLLEESEDIQEDLLVILLSALGRNKND----TARRLAMNVIEQCAGKLEAGIKQFLVS---SMSGDSRPGHSHIDYHEV 248 (1680)
Q Consensus 176 ~~vI~Ese~vp~~vLd~IL~~l~~~k~~----~a~~lA~~v~~~~~dkL~~~I~qyf~~---il~~d~~~~~~~~~~h~L 248 (1680)
-.|.+-.+++..-+|..++-+|...++. +-++.-..++..|.-+.-+. ||+.- +...+ ++
T Consensus 1101 d~IvEsndsmn~lLlkflFthfs~lrN~~~sr~~~q~l~k~~~~~p~k~ves--Qy~e~fp~~~N~~-----------d~ 1167 (1525)
T COG5219 1101 DCIVESNDSMNYLLLKFLFTHFSYLRNEALSRAVSQLLLKCRKGFPIKFVES--QYFEGFPEFPNAD-----------DE 1167 (1525)
T ss_pred hhhhhcchHHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHhCCCchhhhh--hhhhcCcccCCch-----------hH
Confidence 5666666789999999888887654432 33455555555555443333 55431 11111 11
Q ss_pred HHHHHhhcchhhhhhhhhhcccccCCCh--HHHH-----------HHHHHHHHhhcCCCCCh------------hhhcHH
Q 000310 249 IYDVYRCSPQILSGVVPYLTGELLTDQL--DTRL-----------KAVGLVGDLFAVPGSAN------------NEQFHS 303 (1680)
Q Consensus 249 i~eL~~~~P~lL~~ViP~Le~EL~sed~--~~Rl-----------~At~llG~mfs~~~s~~------------a~~y~~ 303 (1680)
++++..+..|-..|++|+. .+|+ +..+.|.+||--||-.+ ...|=.
T Consensus 1168 ---------qmesv~mk~LreKls~d~~El~l~~~~~s~y~~d~Sl~~~~v~~~i~~Pgd~l~~v~k~ey~e~~~~vYL~ 1238 (1525)
T COG5219 1168 ---------QMESVCMKFLREKLSADDNELLLMLLAKSNYRNDRSLDMKGVVRMIERPGDHLLSVKKEEYRERHTIVYLP 1238 (1525)
T ss_pred ---------HHHHHHHHHHHHhhhhhhHHHHHHHHHHhCCCcccccCHhHHHHHhccccchhhhcCHHHHHHHhhHHHHH
Confidence 5556666777777777655 4444 44678999999887433 124778
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHhH
Q 000310 304 VFSEFLKRLTDRIVAVRMSVLEHVK 328 (1680)
Q Consensus 304 ~w~~fL~R~~D~s~~VR~~~ve~~~ 328 (1680)
+|+--++-|.|.+-.+|..++++..
T Consensus 1239 ~w~lI~~hf~dT~yNm~~siI~qL~ 1263 (1525)
T COG5219 1239 LWRLIYGHFADTVYNMYSSIISQLD 1263 (1525)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 8999999999999999999998865
No 171
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.44 E-value=1.5e+03 Score=31.89 Aligned_cols=86 Identities=14% Similarity=0.127 Sum_probs=60.7
Q ss_pred HHHHHHhhcc--hhhhh-hhhhhcccccCCChHHHHHHHHHHHHhhcCC---CCChhhhcHHHHHHHHhhhcCCChhHHH
Q 000310 248 VIYDVYRCSP--QILSG-VVPYLTGELLTDQLDTRLKAVGLVGDLFAVP---GSANNEQFHSVFSEFLKRLTDRIVAVRM 321 (1680)
Q Consensus 248 Li~eL~~~~P--~lL~~-ViP~Le~EL~sed~~~Rl~At~llG~mfs~~---~s~~a~~y~~~w~~fL~R~~D~s~~VR~ 321 (1680)
|..-|-+-+| +.+-. +.+++-.++++.---+|..|.-+++..=+.. ..++.+.+..+.++++. |.+-+||+
T Consensus 445 l~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~---d~~lPV~V 521 (1010)
T KOG1991|consen 445 LASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLN---DNELPVRV 521 (1010)
T ss_pred HHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcc---CCcCchhh
Confidence 3444445577 44433 4455555678888899999999999654221 24677888888888775 89999999
Q ss_pred HHHHHhHHHHhcCCC
Q 000310 322 SVLEHVKSCLLTDPS 336 (1680)
Q Consensus 322 ~~ve~~~~iL~~~p~ 336 (1680)
+.+-+...++.+.+.
T Consensus 522 eAalALq~fI~~~~~ 536 (1010)
T KOG1991|consen 522 EAALALQSFISNQEQ 536 (1010)
T ss_pred HHHHHHHHHHhcchh
Confidence 999888877776653
No 172
>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification]
Probab=33.80 E-value=41 Score=39.00 Aligned_cols=37 Identities=19% Similarity=0.386 Sum_probs=31.2
Q ss_pred cccccceEEEecCCCCceEEEEEEEecCCCCeeEEEc
Q 000310 1377 EDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILY 1413 (1680)
Q Consensus 1377 ~~lvG~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~Y 1413 (1680)
..=||.+|-+-|++|..||.++|....+.++.-.|.+
T Consensus 90 ~w~vg~K~~A~~~ddg~~y~AtIe~ita~~~~~ai~f 126 (262)
T KOG3026|consen 90 GWKVGDKVQAVFSDDGQIYDATIEHITAMEGTVAIIF 126 (262)
T ss_pred ccccCCEEEEeecCCCceEEeehhhccCCCCceeEEE
Confidence 3459999999999999999999999999766655554
No 173
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.76 E-value=1.9e+03 Score=32.68 Aligned_cols=258 Identities=14% Similarity=0.179 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHhcCCCcH------HHHHHHH-HHHHHh--
Q 000310 146 ELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKND------TARRLAM-NVIEQC-- 216 (1680)
Q Consensus 146 ~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~vp~~vLd~IL~~l~~~k~~------~a~~lA~-~v~~~~-- 216 (1680)
.||..||+-=|| -..+|...|.+|=..+|.++..+-.+-+..||..|..+-+. .|--+|. ++++.-
T Consensus 998 kLIPrLyRY~yD-----P~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~ 1072 (1702)
T KOG0915|consen 998 KLIPRLYRYQYD-----PDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPF 1072 (1702)
T ss_pred HhhHHHhhhccC-----CcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCCh
Confidence 578888887666 23589999999999999998777666666666555332111 2322222 222211
Q ss_pred ---hhhhHHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHhh------------cchhhhhhhhhhccc-ccCCChHHHH
Q 000310 217 ---AGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRC------------SPQILSGVVPYLTGE-LLTDQLDTRL 280 (1680)
Q Consensus 217 ---~dkL~~~I~qyf~~il~~d~~~~~~~~~~h~Li~eL~~~------------~P~lL~~ViP~Le~E-L~sed~~~Rl 280 (1680)
.++|--+..+.|.- .|+.-..-..-+|....-|-++ +-+.+.+++|+|=++ ..+.-.++|.
T Consensus 1073 ~~~~e~lpelw~~~fRv---mDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~ 1149 (1702)
T KOG0915|consen 1073 DQVKEKLPELWEAAFRV---MDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRR 1149 (1702)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHH
Confidence 11121111122211 0100000000011111111111 235677888887443 3488899999
Q ss_pred HHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHHHHh----HHHHhcC-CCCCChHHHHHHHHhhhCCCh
Q 000310 281 KAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHV----KSCLLTD-PSRADAPQILTALCDRLLDFD 355 (1680)
Q Consensus 281 ~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~----~~iL~~~-p~~~~~~eii~~L~~rL~D~D 355 (1680)
.+..||-+|....|..+.-..|.+--.|+.-+.-..+.|=--..-.+ ...+-+- -+..-.+-+++.+.+++.-.|
T Consensus 1150 ~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD 1229 (1702)
T KOG0915|consen 1150 FSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYID 1229 (1702)
T ss_pred HHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhh
Confidence 99999999998877777667777777777777777776522211111 1111100 000001124455566666666
Q ss_pred hHHHHHHHHHHHHh--------------------hhhhcCC---CCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 000310 356 ENVRKQVVAVICDV--------------------ACHALNS---IPVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1680)
Q Consensus 356 EkVR~aaV~ai~~l--------------------a~~~l~~---V~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~ 411 (1680)
..|=-+-+-.++++ +..-... .+..+|+.+.-=.+||+..||+..-..+|.|.+..
T Consensus 1230 ~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~S 1308 (1702)
T KOG0915|consen 1230 ISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFS 1308 (1702)
T ss_pred HHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcC
Confidence 65554444444443 3322222 24578999999999999999999999999998864
No 174
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=33.75 E-value=72 Score=41.23 Aligned_cols=63 Identities=17% Similarity=0.203 Sum_probs=39.1
Q ss_pred hcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCC
Q 000310 312 LTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI 377 (1680)
Q Consensus 312 ~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V 377 (1680)
.+|+++-.|..=+-...-...-. . ...-+-.-|.--..|.++.||+|||-+++-+.|.....+
T Consensus 525 l~d~ds~lRy~G~fs~alAy~GT-g--n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~~l 587 (926)
T COG5116 525 LYDKDSILRYNGVFSLALAYVGT-G--NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRDLL 587 (926)
T ss_pred hcCchHHhhhccHHHHHHHHhcC-C--cchhHhhhheeecccCchHHHHHHHHheeeeEecCcchh
Confidence 36888888876443332222111 1 111233344445899999999999999988877766654
No 175
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=33.56 E-value=1.2e+03 Score=32.46 Aligned_cols=40 Identities=23% Similarity=0.233 Sum_probs=28.8
Q ss_pred hHHHHHHHh-cchhhhcCCCcchHHHHHHHHHHHhhhcCCC
Q 000310 51 AMQPFLNAI-VQPVLLKHQDKDVKLLVATCICEITRITAPE 90 (1680)
Q Consensus 51 sl~~~~~~L-v~~~LL~HkD~~Vra~vAcCLadIlRI~APd 90 (1680)
++..++..| +=..||.|.|+.+=-+++.|++-|.-=++|+
T Consensus 329 ~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~ 369 (1051)
T KOG0168|consen 329 EFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHG 369 (1051)
T ss_pred cchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccC
Confidence 355566655 4567888899988888999988776655554
No 176
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=33.35 E-value=1e+03 Score=29.56 Aligned_cols=167 Identities=13% Similarity=0.193 Sum_probs=91.6
Q ss_pred HhhcCCCCCCCCchhHHHHHHHHHhh-cchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCC-CCC------hhhhc
Q 000310 230 SSMSGDSRPGHSHIDYHEVIYDVYRC-SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP-GSA------NNEQF 301 (1680)
Q Consensus 230 ~il~~d~~~~~~~~~~h~Li~eL~~~-~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~-~s~------~a~~y 301 (1680)
.++.|++.........+.|..|+++. .-.+|...+|.|+. +.|..++..++-++... +.. +...|
T Consensus 50 ~IL~G~~e~ep~~e~v~qLa~Ei~~~dll~~Li~~L~~L~f-------EsrKdv~~if~~llr~~~~~~~~p~v~yl~~~ 122 (335)
T PF08569_consen 50 EILYGDGEPEPNPEQVAQLAQEIYRSDLLYLLIRNLPKLDF-------ESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH 122 (335)
T ss_dssp HHHHS-SS----HHHHHHHHHHHHHHTHHHHHHHTGGGS-H-------HHHHHHHHHHHHHHT--BTTB--HHHHHHHT-
T ss_pred HHhcCCCCCCCCHHHHHHHHHHHHHhCHHHHHHHHhhhCCC-------cccccHHHHHHHHHhhccCCCCCchHHHHHhC
Confidence 56777654444444578899999877 23344556666665 48999999999998753 222 35577
Q ss_pred -HHHHHHHHhhhcCCChhHHHHHH-------HHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh
Q 000310 302 -HSVFSEFLKRLTDRIVAVRMSVL-------EHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA 373 (1680)
Q Consensus 302 -~~~w~~fL~R~~D~s~~VR~~~v-------e~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~ 373 (1680)
|++...++.-..+.+..+=+..+ +.+..+++.++ ...-+.+-..-+.=.|=..|...+.++-..+
T Consensus 123 ~peil~~L~~gy~~~dial~~g~mlRec~k~e~l~~~iL~~~-------~f~~ff~~~~~~~Fdiasdaf~t~~~llt~h 195 (335)
T PF08569_consen 123 RPEILDILLRGYENPDIALNCGDMLRECIKHESLAKIILYSE-------CFWKFFKYVQLPNFDIASDAFSTFKELLTRH 195 (335)
T ss_dssp -THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHHHHHHHTSG-------GGGGHHHHTTSSSHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHhcCccccchHHHHHHHHHhhHHHHHHHhCcH-------HHHHHHHHhcCCccHhHHHHHHHHHHHHhcc
Confidence 88888888877765543322211 11111122111 1122333444555556566656655544332
Q ss_pred cCCCCH-------HHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000310 374 LNSIPV-------ETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1680)
Q Consensus 374 l~~V~~-------elL~~LaeR~RDKK~~VR~eAm~~La~LY~~ 410 (1680)
-..+.. ..+......+.-.+.-.|+.++..||.|--.
T Consensus 196 k~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellld 239 (335)
T PF08569_consen 196 KKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLD 239 (335)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHc
Confidence 222211 2344566667777888888899888888754
No 177
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.56 E-value=3.7e+02 Score=34.79 Aligned_cols=179 Identities=13% Similarity=0.086 Sum_probs=0.0
Q ss_pred cccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcC--CCCCChHHHHHHH
Q 000310 270 ELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD--PSRADAPQILTAL 347 (1680)
Q Consensus 270 EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~--p~~~~~~eii~~L 347 (1680)
++.+++.--|..+|++=..|--..+.++.. +-..++.-..--.+.=|+..+-++..+.... +++..-..+.-.+
T Consensus 188 ~qls~~~~h~~g~trlqr~m~~~~~~~~~~----il~q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~l 263 (533)
T KOG2032|consen 188 SQLSDNDIHRVGLTRLQRFMACVQDLEMGK----ILAQLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSL 263 (533)
T ss_pred hhcccCcccHHHHHHHHHHHHhhCCccHHH----HHhhcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHH
Q ss_pred HhhhCCChhHHHHHHHHHHHHhhhhhcCCC----CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchh
Q 000310 348 CDRLLDFDENVRKQVVAVICDVACHALNSI----PVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQN 423 (1680)
Q Consensus 348 ~~rL~D~DEkVR~aaV~ai~~la~~~l~~V----~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~g~~~~~ 423 (1680)
..|..||+.++|..|+..++.++...++.+ +.-+.-.+....-|=+.+|-.+||.+|..+-... .+.....
T Consensus 264 a~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~-----~~~~l~~ 338 (533)
T KOG2032|consen 264 ANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA-----SNDDLES 338 (533)
T ss_pred HHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh-----hhcchhh
Q ss_pred ccccchHHHhhhhccCCCCchhHHHHhhccCcCC
Q 000310 424 EFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPT 457 (1680)
Q Consensus 424 ~~~wIPs~IL~~~Y~nD~~~~lVE~vL~e~LlP~ 457 (1680)
-|--|--++-..+-..+..-..--.++|+.|.|+
T Consensus 339 ~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l 372 (533)
T KOG2032|consen 339 YLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKL 372 (533)
T ss_pred hchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHH
No 178
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=31.94 E-value=1e+03 Score=28.93 Aligned_cols=147 Identities=24% Similarity=0.284 Sum_probs=79.0
Q ss_pred HHHHHHHHHhhcchhhhhhhhhhccccc--CCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhc-CCChhHHH
Q 000310 245 YHEVIYDVYRCSPQILSGVVPYLTGELL--TDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLT-DRIVAVRM 321 (1680)
Q Consensus 245 ~h~Li~eL~~~~P~lL~~ViP~Le~EL~--sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~-D~s~~VR~ 321 (1680)
.|++.|-|-+-.- ...+|.|..-|. +.++-+|..|-+.||.++ .+. -..+|.|.. |....||-
T Consensus 53 khe~ay~LgQ~~~---~~Av~~l~~vl~desq~pmvRhEAaealga~~-~~~----------~~~~l~k~~~dp~~~v~E 118 (289)
T KOG0567|consen 53 KHELAYVLGQMQD---EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DPE----------SLEILTKYIKDPCKEVRE 118 (289)
T ss_pred ccchhhhhhhhcc---chhhHHHHHHhcccccchHHHHHHHHHHHhhc-chh----------hHHHHHHHhcCCccccch
Confidence 4666665543311 112333333333 457899999999999888 543 234555555 66666655
Q ss_pred HHHHHhHH---------HHhc------CCCCC-Ch--------------------------------HHHHHHHHhhhCC
Q 000310 322 SVLEHVKS---------CLLT------DPSRA-DA--------------------------------PQILTALCDRLLD 353 (1680)
Q Consensus 322 ~~ve~~~~---------iL~~------~p~~~-~~--------------------------------~eii~~L~~rL~D 353 (1680)
.|-.++++ +..+ +|... .. .+-+.+|.+-|.|
T Consensus 119 Tc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~ 198 (289)
T KOG0567|consen 119 TCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLAD 198 (289)
T ss_pred HHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhccc
Confidence 43333322 1111 12111 00 1223344444444
Q ss_pred ChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCC--hhHHHHHHHHHHHHHHHhh
Q 000310 354 FDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKS--VLVKRYTMERLADIFRGCC 412 (1680)
Q Consensus 354 ~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK--~~VR~eAm~~La~LY~~~~ 412 (1680)
.-.-.|..|--+++++- +..-+-.|.+.++|.+ +=||.+|.+.||.+=...|
T Consensus 199 ~SalfrhEvAfVfGQl~-------s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~~ 252 (289)
T KOG0567|consen 199 DSALFRHEVAFVFGQLQ-------SPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADEDC 252 (289)
T ss_pred chHHHHHHHHHHHhhcc-------chhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHHH
Confidence 44444544444443321 3334556778888877 6799999999998876654
No 179
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=31.70 E-value=9.9e+02 Score=31.04 Aligned_cols=162 Identities=13% Similarity=0.152 Sum_probs=93.7
Q ss_pred hhHHHHHHHHHHHHhcccccccH----HHHHHHHHHhcCCCcH----HHHHHHHHHHHHhhhhhHHHH----HHHHHHhh
Q 000310 165 ESVLSSMQTIMIVLLEESEDIQE----DLLVILLSALGRNKND----TARRLAMNVIEQCAGKLEAGI----KQFLVSSM 232 (1680)
Q Consensus 165 ~~V~~~m~~IL~~vI~Ese~vp~----~vLd~IL~~l~~~k~~----~a~~lA~~v~~~~~dkL~~~I----~qyf~~il 232 (1680)
..-...|..|+.-+-+.+.+|.. ++|..+|.-+...+.. -|.++-..+|...+++|..+. +.++-..-
T Consensus 302 ~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ 381 (516)
T KOG2956|consen 302 SERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAK 381 (516)
T ss_pred hHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHh
Confidence 34556778888888888888988 4555555556553332 566666677777777765543 33332211
Q ss_pred cCCCCCCCCchhHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCC-ChhhhcHHHHHHHHhh
Q 000310 233 SGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGS-ANNEQFHSVFSEFLKR 311 (1680)
Q Consensus 233 ~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s-~~a~~y~~~w~~fL~R 311 (1680)
+..........-..+.-|..+.|..=..||-. -+..+|.+.=.++++.+.+||..-.. .+...-|++-=+++.-
T Consensus 382 --ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~---~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqa 456 (516)
T KOG2956|consen 382 --DSQDEVMRVAEEDCLTTLASHLPLQCIVNISP---LILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQA 456 (516)
T ss_pred --CCchhHHHHHHHHHHHHHHhhCchhHHHHHhh---HHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHH
Confidence 10000011122334555556666443333222 13347778888889899999976432 2334445555566666
Q ss_pred hcCCChhHHHHHHHHhHHHH
Q 000310 312 LTDRIVAVRMSVLEHVKSCL 331 (1680)
Q Consensus 312 ~~D~s~~VR~~~ve~~~~iL 331 (1680)
+.-.+..||..+|=|...++
T Consensus 457 y~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 457 YDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred hcCchHHhhhhHHHhHHHHH
Confidence 77777788877776665544
No 180
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=31.64 E-value=3.6e+02 Score=33.52 Aligned_cols=145 Identities=15% Similarity=0.134 Sum_probs=92.9
Q ss_pred hhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHH
Q 000310 264 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQI 343 (1680)
Q Consensus 264 iP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~ei 343 (1680)
+|.--....+-+.+.|..|..-|-.+.-...-+..=.--.-|.-.|+=.++.++.||.....-++.|..|||.- ...+
T Consensus 85 ~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~--Qe~v 162 (342)
T KOG2160|consen 85 IPIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKS--QEQV 162 (342)
T ss_pred hhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHH--HHHH
Confidence 45555556677888899999988766544321111111235888888889999999999999999999999842 1223
Q ss_pred HH------HHHhhhCCChhHHHHHHHHHHHHhhhhhcCC------C-CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000310 344 LT------ALCDRLLDFDENVRKQVVAVICDVACHALNS------I-PVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1680)
Q Consensus 344 i~------~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~------V-~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~ 410 (1680)
++ -+..--.|.+..||..|.-||+.+....... + ...+|..+.++= +.....++.|+..++.|-..
T Consensus 163 ~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~-~~~~~lkrK~~~Ll~~Ll~~ 241 (342)
T KOG2160|consen 163 IELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSN-NTSVKLKRKALFLLSLLLQE 241 (342)
T ss_pred HHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcC-CcchHHHHHHHHHHHHHHHh
Confidence 31 2222237999999999999998876533222 1 223444443321 13455666677777766665
Q ss_pred h
Q 000310 411 C 411 (1680)
Q Consensus 411 ~ 411 (1680)
.
T Consensus 242 ~ 242 (342)
T KOG2160|consen 242 D 242 (342)
T ss_pred h
Confidence 3
No 181
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=31.48 E-value=7.9e+02 Score=32.65 Aligned_cols=123 Identities=8% Similarity=0.137 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHhhhhccCCCcchhccccchHHHhhhhccCCCC------chhHHHHhhccCcCCCCCHHHHHHHHHHHH
Q 000310 399 YTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFG------SDTIESVLCGSLFPTGFSVKDRVRHWVRIF 472 (1680)
Q Consensus 399 eAm~~La~LY~~~~~~~~~g~~~~~~~~wIPs~IL~~~Y~nD~~------~~lVE~vL~e~LlP~~~~~~~R~~~ll~l~ 472 (1680)
+|--.+..+|+.+..-. + -..++.-||.+.+. ...++.|+.+ .++.|.-.+-++.
T Consensus 246 eaa~Vve~ay~~~A~l~-------Q-----r~~li~EfYG~efqlfK~sn~~Tl~kil~~-------~pekk~~I~~~l~ 306 (652)
T KOG2050|consen 246 EAAYVVEYAYNDFATLE-------Q-----RQYLIQEFYGDEFQLFKDSNDKTLDKILAE-------APEKKASILRHLK 306 (652)
T ss_pred HHHHHHHHHHHhhccHH-------H-----HHHHHHHHhhHHHHHHhccCcccHHHHHHh-------ChHhHHHHHHHHH
Confidence 55666777777653210 1 12234445544322 2268888664 5567877777777
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhh--cCCchHHHHHHHHHHhhccHH
Q 000310 473 SGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRS--FAEPAKAEENFLILDQLKDAN 550 (1680)
Q Consensus 473 ~~LD~~~~kal~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kL~~~i~~Ls~~--fPDp~Ka~~~L~kf~klnD~R 550 (1680)
..+++..-+-...+ +-+-.+|..||..|. +.+...-|+-....+..+ -||..++.=.+-.++-.+||+
T Consensus 307 ~~I~~v~eKg~v~~----tivHk~mlEy~~~ad------e~e~~e~l~ll~elv~e~vHT~dGS~vAm~li~~a~aKeRK 376 (652)
T KOG2050|consen 307 AIITPVAEKGSVDH----TIVHKLMLEYLTIAD------EEEKSELLELLKELVPEMVHTRDGSRVAMKLIWHATAKERK 376 (652)
T ss_pred HHhHHHhhcchhHH----HHHHHHHHHHHHhCC------HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhCCHHHHH
Confidence 77777655544432 446778999998763 334443444333444433 356555433333334455654
No 182
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=30.35 E-value=1.3e+03 Score=32.07 Aligned_cols=164 Identities=16% Similarity=0.236 Sum_probs=93.5
Q ss_pred HccccCCCCCCHHHHHHHHHHHHHHHhhcCCCCch--------hhHHhHHHHHHHhcchhhhcCCCcchHHHHHHHHHHH
Q 000310 12 VGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPA--------SILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEI 83 (1680)
Q Consensus 12 ~g~kL~~~~~s~~eLlkrLk~L~~~Ls~~dQ~~~~--------~~~~sl~~~~~~Lv~~~LL~HkD~~Vra~vAcCLadI 83 (1680)
+++++.+..++..+.-+++= ... .|.++. .+=++..++...|.+.. =.-.|.++.-..|.|+++-
T Consensus 44 V~~~IisldL~v~~Vy~~vW-----~~~-~~~~pM~v~YR~~Gl~geAtE~~v~~l~~~~-~~~~d~e~~~~~~~v~~~~ 116 (802)
T PF13764_consen 44 VNNKIISLDLPVRDVYEKVW-----KPN-NQNPPMRVVYRMRGLDGEATEEFVESLEDDS-EEEEDPEQEFKIASVLAEC 116 (802)
T ss_pred ecCeeecCCCcHHHHHHHHh-----ccc-CCCCCeEEEEeecCCCCccchhhHhhccCcc-ccccCHHHHHHHHHHhhcC
Confidence 34556666666666666664 222 333332 23356677777776542 1124555566666665431
Q ss_pred hhhcCCCCCCChhHHHHHHHHHHHhccCCCCC--CCCChhhHHHHHHHHHhhhhhh-hcccCCchHHHHHHHHHHHHhhc
Q 000310 84 TRITAPEAPYSDDVLKDIFQLIVGTFSGLKDT--GGPSFGRRVVILETLAKYRSCV-VMLDLECDELVNEMYSTFFAVAS 160 (1680)
Q Consensus 84 lRI~APdAPytd~qLkdIF~l~i~qf~~L~d~--~~p~f~q~~~LLe~LA~vks~v-l~~DL~~~~Li~~lF~~ff~~v~ 160 (1680)
.-|..++.+ +..+.+. +......-..||....+|+.+- .++.+.+=..+...++.+|..-.
T Consensus 117 ------------gGL~~ll~~----l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~ 180 (802)
T PF13764_consen 117 ------------GGLEVLLSR----LDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQ 180 (802)
T ss_pred ------------CCHHHHHHH----HHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCcc
Confidence 112222222 2222222 2334555677777777777766 44556666777788888887544
Q ss_pred CCChhhHHHHHHHHHHHHhccccc--c---------------cHHHHHHHHHHhc
Q 000310 161 DDHPESVLSSMQTIMIVLLEESED--I---------------QEDLLVILLSALG 198 (1680)
Q Consensus 161 ~~~~~~V~~~m~~IL~~vI~Ese~--v---------------p~~vLd~IL~~l~ 198 (1680)
+.....+...++.||..++.|... + ..+.++.+|+++.
T Consensus 181 ~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~ 235 (802)
T PF13764_consen 181 NSSQAEIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLN 235 (802)
T ss_pred ccccchHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhc
Confidence 334456666777777777777543 2 4566888888885
No 183
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=30.18 E-value=9.5e+02 Score=33.32 Aligned_cols=183 Identities=14% Similarity=0.067 Sum_probs=103.1
Q ss_pred HHhhhccccChhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcC-cc-ccHHHHHHHHhhccccchHhHHHHHH
Q 000310 593 SMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLL-LG-GTEEELVNLLKEENEIIKEGILHVLA 670 (1680)
Q Consensus 593 l~R~S~lifNks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~l-Fk-~~v~~Li~lL~~~~~~~~~~aLkiLa 670 (1680)
+-|++-+.+.--.||.|+..+..- +-...++-+++-|..||+.+|.- ++ +.+...+.+|.-=...+...||-|.+
T Consensus 243 lP~S~a~vV~~~aIPvl~~kL~~I---eyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~Alaiaa 319 (1051)
T KOG0168|consen 243 LPRSSAIVVDEHAIPVLLEKLLTI---EYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAA 319 (1051)
T ss_pred ccchhheeecccchHHHHHhhhhh---hhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777777788888776421 11124566788899999999853 22 22222222222111124467888888
Q ss_pred HhhcchhhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccc-------hHHHHHHHHHHhhhhc--C-CCc
Q 000310 671 KAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLK-------SLSVLYKRLVDMLEEK--T-HLP 740 (1680)
Q Consensus 671 k~~k~~~e~~~~~~s~l~~~L~~lal~GtpkqAKyAVr~Laa~~~~~~~~-------~~~~L~~~L~~~L~~~--~-~l~ 740 (1680)
++.+.++..-+..--...+.|..+=.+-+.+-.-++.-|++.+....... +-.+|++++..-|.-. . ..+
T Consensus 320 N~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~ 399 (1051)
T KOG0168|consen 320 NCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNG 399 (1051)
T ss_pred HHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCccccccc
Confidence 88887654322111234677888777877777778888887776543210 1124445554444311 1 223
Q ss_pred hHHHH---HHHHHhhcccccccchHHHHHHHHHhhhccccc
Q 000310 741 AVLQS---LGCIAQTAMPVFETRESEIEEFIKSKILRCSNK 778 (1680)
Q Consensus 741 t~L~s---L~~Iaq~aP~vfe~~~~eI~~fiik~ILl~~~~ 778 (1680)
++-.. |...+--.|..|.+....=+..+++.||.....
T Consensus 400 ~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~ 440 (1051)
T KOG0168|consen 400 TYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSK 440 (1051)
T ss_pred chhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCc
Confidence 33233 333333358888876544445567888877654
No 184
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=28.70 E-value=2.5e+02 Score=33.01 Aligned_cols=97 Identities=15% Similarity=0.231 Sum_probs=62.8
Q ss_pred CChHHHHHHHHHHHHhhcCC-CCChhhhcHH-HHHHHHhhhcCC----ChhHHHHHHHHhHHHHh---cCC-CCCChHHH
Q 000310 274 DQLDTRLKAVGLVGDLFAVP-GSANNEQFHS-VFSEFLKRLTDR----IVAVRMSVLEHVKSCLL---TDP-SRADAPQI 343 (1680)
Q Consensus 274 ed~~~Rl~At~llG~mfs~~-~s~~a~~y~~-~w~~fL~R~~D~----s~~VR~~~ve~~~~iL~---~~p-~~~~~~ei 343 (1680)
.....++.+.+++..||+.+ +....-.|.. ..-.-+...... ...+|+++...+-++-. .++ ..+...++
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~l 201 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSEL 201 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 78999999999999999975 4455566666 444444444443 68899999888876422 223 22333456
Q ss_pred HHHHHhhhC-C-ChhHHHHHHHHHHHHhh
Q 000310 344 LTALCDRLL-D-FDENVRKQVVAVICDVA 370 (1680)
Q Consensus 344 i~~L~~rL~-D-~DEkVR~aaV~ai~~la 370 (1680)
+..+..-+. . .|+.+....+.+++.+.
T Consensus 202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~ 230 (268)
T PF08324_consen 202 LSSIIEVLSREESDEEALYRLLVALGTLL 230 (268)
T ss_dssp HHHHHHHCHCCHTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHh
Confidence 766666332 2 46666666667777776
No 185
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=28.61 E-value=93 Score=29.01 Aligned_cols=35 Identities=17% Similarity=0.260 Sum_probs=29.0
Q ss_pred HHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHH
Q 000310 322 SVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRK 360 (1680)
Q Consensus 322 ~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~ 360 (1680)
.+|+.++.|.-.|+ ..+|...|.+|-+|+||.|-.
T Consensus 7 k~VQ~iKEiv~~hs----e~eIya~L~ecnMDpnea~qr 41 (60)
T PF06972_consen 7 KTVQSIKEIVGCHS----EEEIYAMLKECNMDPNEAVQR 41 (60)
T ss_pred HHHHHHHHHhcCCC----HHHHHHHHHHhCCCHHHHHHH
Confidence 57889999887754 258999999999999998755
No 186
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=28.30 E-value=1.6e+02 Score=31.99 Aligned_cols=71 Identities=15% Similarity=0.229 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccH------HHHHHHHhh-ccccchHhHHHHHHHhhcc
Q 000310 603 KEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE------EELVNLLKE-ENEIIKEGILHVLAKAGGT 675 (1680)
Q Consensus 603 ks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v------~~Li~lL~~-~~~~~~~~aLkiLak~~k~ 675 (1680)
+..+..|.+++.. +|....-.|+.||..+.+.|...|...+ ++|++++.. ..+.+...+|..+..|+..
T Consensus 36 k~a~ral~KRl~~----~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 36 KDCLKAIMKRLNH----KDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 3445555555432 2222334567788888888888886543 667777776 3445677888888888755
Q ss_pred hh
Q 000310 676 IR 677 (1680)
Q Consensus 676 ~~ 677 (1680)
++
T Consensus 112 f~ 113 (144)
T cd03568 112 FK 113 (144)
T ss_pred hC
Confidence 44
No 187
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=27.91 E-value=2.4e+02 Score=34.74 Aligned_cols=132 Identities=17% Similarity=0.223 Sum_probs=0.0
Q ss_pred hhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhh--------hcHHHHHHHHhhhcCCCh--------
Q 000310 254 RCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE--------QFHSVFSEFLKRLTDRIV-------- 317 (1680)
Q Consensus 254 ~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~--------~y~~~w~~fL~R~~D~s~-------- 317 (1680)
.++=.+|.+=+..|+..|.+....+...|.+++..|.+-.|..+++ +++.+=+-.--|..+...
T Consensus 48 ~l~~~iL~~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~ 127 (330)
T PF11707_consen 48 ELIRSILQNHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSK 127 (330)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccC
Q ss_pred -hHHHHHHHHhHHHHhcCC---------CCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHH
Q 000310 318 -AVRMSVLEHVKSCLLTDP---------SRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAE 387 (1680)
Q Consensus 318 -~VR~~~ve~~~~iL~~~p---------~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~Lae 387 (1680)
+||..+|+++-.+|...+ .+....-++++|.. |+.+.|+.- |.++.+
T Consensus 128 ~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~---D~~~~v~~i--------------------L~~l~~ 184 (330)
T PF11707_consen 128 PSIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRK---DPPETVILI--------------------LETLKD 184 (330)
T ss_pred cCHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccC---CCHHHHHHH--------------------HHHHHH
Q ss_pred hhccCChhHHH---------HHHHHHHHHHH
Q 000310 388 RLRDKSVLVKR---------YTMERLADIFR 409 (1680)
Q Consensus 388 R~RDKK~~VR~---------eAm~~La~LY~ 409 (1680)
++-.-. .|.+ .++..|+.+|.
T Consensus 185 ~Vl~~~-~v~r~~K~~~fn~~~L~~l~~Ly~ 214 (330)
T PF11707_consen 185 KVLKDS-SVSRSTKCKLFNEWTLSQLASLYS 214 (330)
T ss_pred HhccCC-CCChhhhhhhcCHHHHHHHHHHhc
No 188
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=27.79 E-value=2.5e+03 Score=32.29 Aligned_cols=157 Identities=10% Similarity=0.133 Sum_probs=80.9
Q ss_pred hHHhHHHHHHHhcc--hhhhcC----CCcchHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChh
Q 000310 48 ILEAMQPFLNAIVQ--PVLLKH----QDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFG 121 (1680)
Q Consensus 48 ~~~sl~~~~~~Lv~--~~LL~H----kD~~Vra~vAcCLadIlRI~APdAPytd~qLkdIF~l~i~qf~~L~d~~~p~f~ 121 (1680)
+.+++..+.++|.. ..=|.. +---++.+|-.|..++-||-- +-..||..+-.-|-..+-..+ -.
T Consensus 1083 ~~eai~~fv~AL~~vS~eEl~~~~~pr~FsLqKLveIa~~Nm~Rirl--------~W~~iW~~l~~hf~~vg~~~n--~~ 1152 (1780)
T PLN03076 1083 NSEAIIDFVKALCKVSMEELRSPSDPRVFSLTKIVEIAHYNMNRIRL--------VWSSIWHVLSDFFVTIGCSEN--LS 1152 (1780)
T ss_pred CHHHHHHHHHHHHHhhHHHHccCCCCchhHHHHHHHHHHhcccchhe--------ehHhHHHHHHHHHHHhcCCcc--hh
Confidence 45677777777743 333322 223356667777777777644 223556555555544432222 22
Q ss_pred hHHHHHHHHHhhhh-hhhcccCCc---hHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhccc-ccccHHHHHHHHHH
Q 000310 122 RRVVILETLAKYRS-CVVMLDLEC---DELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEES-EDIQEDLLVILLSA 196 (1680)
Q Consensus 122 q~~~LLe~LA~vks-~vl~~DL~~---~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Es-e~vp~~vLd~IL~~ 196 (1680)
-.+|.|.+|-.+-. |.-.-+|+. +..+..=|..++. ......|...+...+..+|... +.|-. =++.||.-
T Consensus 1153 va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~---~s~~~eVrE~ILeCv~qmI~s~~~nIkS-GWktIF~V 1228 (1780)
T PLN03076 1153 IAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMR---KSNAVEIRELIIRCVSQMVLSRVNNVKS-GWKSMFMV 1228 (1780)
T ss_pred HHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHH---hcCchHHHHHHHHHHHHHHHHHHhhhhc-CcHHHHHH
Confidence 46777776654311 112223331 2233344444443 3334466667777777666653 33433 36666665
Q ss_pred hc---CCCc----HHHHHHHHHHHHHhhh
Q 000310 197 LG---RNKN----DTARRLAMNVIEQCAG 218 (1680)
Q Consensus 197 l~---~~k~----~~a~~lA~~v~~~~~d 218 (1680)
|. ..+. ..||+....|++....
T Consensus 1229 Ls~aa~d~~e~iV~lAFetl~~I~~d~f~ 1257 (1780)
T PLN03076 1229 FTTAAYDDHKNIVLLAFEIIEKIIREYFP 1257 (1780)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHHhhhh
Confidence 53 1111 1678887777766554
No 189
>PF02237 BPL_C: Biotin protein ligase C terminal domain; InterPro: IPR003142 This C-terminal domain has an SH3-like barrel fold, the function of which is unknown. It is found associated with prokaryotic bifunctional transcriptional repressors [] and eukaryotic enzymes involved in biotin utilization [, ]. In Escherichia coli the biotin operon repressor (BirA) is a bifunctional protein. BirA acts both as the acetyl-coA carboxylase biotin holoenzyme synthetase (6.3.4.15 from EC) and as the biotin operon repressor. DNA sequence analysis of mutations indicates that the helix-turn-helix DNA binding region is located at the N terminus while mutations affecting enzyme function, although mapping over a large region, are found mainly in the central part of the protein's primary sequence [].; GO: 0006464 protein modification process; PDB: 3RUX_A 2CGH_A 3L1A_B 3L2Z_A 1HXD_A 1BIB_A 2EWN_B 1BIA_A 2EJ9_A 3FJP_A ....
Probab=27.44 E-value=1.5e+02 Score=26.10 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=31.3
Q ss_pred ccceEEEecCCCCceEEEEEEEecCCCCeeEEEccCCcceee
Q 000310 1380 IGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVL 1421 (1680)
Q Consensus 1380 vG~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdDgd~E~l 1421 (1680)
+|++|+|.++ ...|.|.+.+.|+. +.=.|+.+||..+.+
T Consensus 2 lG~~V~v~~~--~~~~~G~~~gId~~-G~L~v~~~~g~~~~i 40 (48)
T PF02237_consen 2 LGQEVRVETG--DGEIEGIAEGIDDD-GALLVRTEDGSIRTI 40 (48)
T ss_dssp TTSEEEEEET--SCEEEEEEEEEETT-SEEEEEETTEEEEEE
T ss_pred CCCEEEEEEC--CeEEEEEEEEECCC-CEEEEEECCCCEEEE
Confidence 6999999994 34679999999876 888888888855544
No 190
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=27.31 E-value=96 Score=25.87 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=25.2
Q ss_pred HHHHHHHhhhCCChhHHHHHHHHHHHHhh
Q 000310 342 QILTALCDRLLDFDENVRKQVVAVICDVA 370 (1680)
Q Consensus 342 eii~~L~~rL~D~DEkVR~aaV~ai~~la 370 (1680)
..++.|...|.+.|..||.+|+-+++.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 36788889999999999999999988765
No 191
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=27.27 E-value=1.2e+03 Score=29.49 Aligned_cols=223 Identities=17% Similarity=0.210 Sum_probs=0.0
Q ss_pred CCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCchHHH
Q 000310 509 DGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDF 588 (1680)
Q Consensus 509 ~~d~~ei~~kL~~~i~~Ls~~fPDp~Ka~~~L~kf~klnD~Ri~kLLk~~idp~td~~tv~~a~kELlkkL~~k~~~~d~ 588 (1680)
+.+++....++.+.|-.+...| ..|=++.+..|.+--=.-+|++|.. ++.+..|..+. +....|
T Consensus 102 d~~e~~~l~kvK~~i~~~~~ly--~~kY~e~f~~~l~~fv~~vw~lL~~-~~~~~~~D~lv-------------~~al~F 165 (370)
T PF08506_consen 102 DDDEPGLLEKVKAWICENLNLY--AEKYEEEFEPFLPTFVQAVWNLLTK-ISQQPKYDILV-------------SKALQF 165 (370)
T ss_dssp -SSS--HHHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHTC---SSGGGHHHH-------------HHHHHH
T ss_pred CcccccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH-hhhcccccHHH-------------HHHHHH
Q ss_pred HHHHHHhhhcc-cc-ChhHHHHHHHHH------------------------HhhcccchhhhHHHHHHHHHHHHhhCCcC
Q 000310 589 LSTLSMKCSYL-LF-NKEHVKEILLEV------------------------AAQKSSANAQFMQSCMDILGILARFSPLL 642 (1680)
Q Consensus 589 l~~Ll~R~S~l-if-Nks~V~~LL~~v------------------------~~~~~~~~~~~~~~a~eLL~~IS~~~P~l 642 (1680)
+..+..+..+- +| ++.|+..|++.+ ..-..+...+....|.++|..+++.++..
T Consensus 166 L~~v~~~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~ 245 (370)
T PF08506_consen 166 LSSVAESPHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQ 245 (370)
T ss_dssp HHHHHTSHHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcchhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHH
Q ss_pred ccccHHHHHHHHhh-------ccccchHhHHHHHHHhhcchhhhhhcccc-----hHHHHHHHHhh-------cCChHHH
Q 000310 643 LGGTEEELVNLLKE-------ENEIIKEGILHVLAKAGGTIREQLAATSS-----SVDLLLERLCL-------EGSRRQA 703 (1680)
Q Consensus 643 Fk~~v~~Li~lL~~-------~~~~~~~~aLkiLak~~k~~~e~~~~~~s-----~l~~~L~~lal-------~GtpkqA 703 (1680)
...-+...+..+.. .+...+++||..+..++-.....-.+... .+..-+..... ...|-.-
T Consensus 246 v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLk 325 (370)
T PF08506_consen 246 VTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILK 325 (370)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchH
Q ss_pred HHHHHHHHhhcCCCccchHHHHHHHHHHhhhhcCCCchHHHHHH
Q 000310 704 KYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLG 747 (1680)
Q Consensus 704 KyAVr~Laa~~~~~~~~~~~~L~~~L~~~L~~~~~l~t~L~sL~ 747 (1680)
=.|++.+....+-=....+..++..++.+|.......+..++.+
T Consensus 326 a~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 326 ADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp HHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhh
No 192
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=26.96 E-value=2.2e+03 Score=31.28 Aligned_cols=125 Identities=10% Similarity=0.035 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCC-CChHHHHHHHHhhhCCChh
Q 000310 278 TRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR-ADAPQILTALCDRLLDFDE 356 (1680)
Q Consensus 278 ~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~-~~~~eii~~L~~rL~D~DE 356 (1680)
.+..+.+.|-.++- .+++++...+.|..--++.|-..+-.....++...+.. ....+|+....-.+.|++.
T Consensus 486 ~~~lgr~AL~nLL~--------~N~dLl~~~IdrCYss~~~va~gYF~vlaev~~~~~~~~~~~~~LL~L~Lfklg~~~~ 557 (1120)
T PF14228_consen 486 RHSLGRRALKNLLE--------HNPDLLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREYPPCPFWELLNLVLFKLGDESS 557 (1120)
T ss_pred HHHHHHHHHHHHHH--------hhHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCCCCCCHHHhHHHHHHhhcCCcH
Confidence 33555555555554 34568888888888888888777777777777655331 2345677766778889999
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000310 357 NVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1680)
Q Consensus 357 kVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~ 410 (1680)
.||..|++-+..+....+..-..+-...+-+.+.++-+.|-+.|...|++....
T Consensus 558 eIR~~A~qLL~~Le~R~~~~s~~~~~~~f~~si~s~l~~vYk~aQ~eLS~~LA~ 611 (1120)
T PF14228_consen 558 EIRSKAMQLLRALEERFFSSSGSEKSGDFRESISSKLPAVYKKAQFELSKRLAK 611 (1120)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccceehhccCCcHHHHHHHHHHHHHHHHH
Confidence 999998888877765444322211122233455566565555555555554443
No 193
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=26.95 E-value=4.9e+02 Score=27.64 Aligned_cols=81 Identities=7% Similarity=0.027 Sum_probs=57.3
Q ss_pred HHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcC-----CCCHHHHHHHHHhhccC---ChhHHHHH
Q 000310 329 SCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN-----SIPVETVKLVAERLRDK---SVLVKRYT 400 (1680)
Q Consensus 329 ~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~-----~V~~elL~~LaeR~RDK---K~~VR~eA 400 (1680)
+++...+ ....+.+.+|.+||...+..|.+.|+..+-.+....-. ..+.+.+..+...+..+ ...||..+
T Consensus 26 d~I~~~~--~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~ki 103 (133)
T cd03561 26 DLINLKP--NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKA 103 (133)
T ss_pred HHHhCCC--CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 4444443 34679999999999999999999999888776653322 22446666666666654 56899999
Q ss_pred HHHHHHHHHHh
Q 000310 401 MERLADIFRGC 411 (1680)
Q Consensus 401 m~~La~LY~~~ 411 (1680)
+..+...+..+
T Consensus 104 l~ll~~W~~~f 114 (133)
T cd03561 104 LELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHh
Confidence 88877666544
No 194
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=26.87 E-value=1.4e+02 Score=30.06 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHHHHhhhhhcCCCCH---HHHHHHHHhhccCChhHHHHHHHHHHHHHHHhh
Q 000310 355 DENVRKQVVAVICDVACHALNSIPV---ETVKLVAERLRDKSVLVKRYTMERLADIFRGCC 412 (1680)
Q Consensus 355 DEkVR~aaV~ai~~la~~~l~~V~~---elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~ 412 (1680)
+...|.++|-++|.+....+-.||. ++|..|+....| ...||..+=++|++.++.+.
T Consensus 2 ~~~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~ 61 (90)
T PF11919_consen 2 DLRRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQ 61 (90)
T ss_dssp H-HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCc
Confidence 3456889999999999988889987 567889999997 78999999999999999874
No 195
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=26.76 E-value=1.1e+03 Score=29.75 Aligned_cols=199 Identities=17% Similarity=0.177 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHhhhhhHHHHH----HHHHHhhcCCCCCCCCchhHHHHHHHHHhh--c-----chhhhhhhhhhccccc
Q 000310 204 TARRLAMNVIEQCAGKLEAGIK----QFLVSSMSGDSRPGHSHIDYHEVIYDVYRC--S-----PQILSGVVPYLTGELL 272 (1680)
Q Consensus 204 ~a~~lA~~v~~~~~dkL~~~I~----qyf~~il~~d~~~~~~~~~~h~Li~eL~~~--~-----P~lL~~ViP~Le~EL~ 272 (1680)
+||++.+-+|.... -++..++ -|+.-.+..+....-+...+..+|+.+..+ . ..++..++--.|+
T Consensus 44 a~yRilRy~i~d~~-~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~--- 119 (371)
T PF14664_consen 44 AGYRILRYLISDEE-SLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEH--- 119 (371)
T ss_pred HHHHHHHHHHcCHH-HHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhC---
Confidence 77888887775542 2222222 111112222211111223577888888877 3 4555666666665
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCC-C------CChHHHHH
Q 000310 273 TDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPS-R------ADAPQILT 345 (1680)
Q Consensus 273 sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~-~------~~~~eii~ 345 (1680)
.+...|..|.+||.++.-... .++ .+-.-+...+.-..|-..++=-.++...-++| ++|. | -+...++.
T Consensus 120 -~~D~lr~~cletL~El~l~~P-~lv-~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lL-d~p~tR~yl~~~~dL~~l~a 195 (371)
T PF14664_consen 120 -EDDRLRRICLETLCELALLNP-ELV-AECGGIRVLLRALIDGSFSISESLLDTLLYLL-DSPRTRKYLRPGFDLESLLA 195 (371)
T ss_pred -CchHHHHHHHHHHHHHHhhCH-HHH-HHcCCHHHHHHHHHhccHhHHHHHHHHHHHHh-CCcchhhhhcCCccHHHHHH
Confidence 888999999999999875421 111 11112334444455544455555555555544 4443 1 22344555
Q ss_pred HHHhh----hCCChhHHHHH-HHHHHHHhhh-----hhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000310 346 ALCDR----LLDFDENVRKQ-VVAVICDVAC-----HALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1680)
Q Consensus 346 ~L~~r----L~D~DEkVR~a-aV~ai~~la~-----~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~ 410 (1680)
.+.+- ..+..+-=|.+ +..+|..+-. ..+..-+...++.+.+=++=..+.||+.-+..|-.+++.
T Consensus 196 pftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllri 270 (371)
T PF14664_consen 196 PFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRI 270 (371)
T ss_pred hhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCC
Confidence 55544 22222111332 3333333322 111222336788888888888889999999999999985
No 196
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=26.72 E-value=1.5e+03 Score=31.53 Aligned_cols=104 Identities=15% Similarity=0.134 Sum_probs=78.4
Q ss_pred HHHHhhhcCCChhHHHHHHHHhHHHHhcCC---CCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh---cCCCCH
Q 000310 306 SEFLKRLTDRIVAVRMSVLEHVKSCLLTDP---SRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA---LNSIPV 379 (1680)
Q Consensus 306 ~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p---~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~---l~~V~~ 379 (1680)
..|...+.|+.-.=|.+.++....+|.+.. .-.....+.-++.-++.|..-.|=..+...+..+|..- +.....
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~ 335 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAK 335 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 367788999999999999999999998765 11222456678888999999999988888888877632 333344
Q ss_pred HHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 000310 380 ETVKLVAERLRDKSVLVKRYTMERLADIFR 409 (1680)
Q Consensus 380 elL~~LaeR~RDKK~~VR~eAm~~La~LY~ 409 (1680)
.++-.|.+|+.|||..+|..+...+=.+.+
T Consensus 336 ~v~p~lld~lkekk~~l~d~l~~~~d~~~n 365 (815)
T KOG1820|consen 336 NVFPSLLDRLKEKKSELRDALLKALDAILN 365 (815)
T ss_pred hhcchHHHHhhhccHHHHHHHHHHHHHHHh
Confidence 456788999999999998876655544444
No 197
>PF08605 Rad9_Rad53_bind: Fungal Rad9-like Rad53-binding; InterPro: IPR013914 In Saccharomyces cerevisiae (Baker s yeast), the Rad9 is a key adaptor protein in DNA damage checkpoint pathways. DNA damage induces Rad9 phosphorylation, and Rad53 specifically associates with this region of Rad9, when phosphorylated, via the Rad53 IPR000253 from INTERPRO domain []. There is no clear higher eukaryotic ortholog to Rad9.
Probab=26.54 E-value=1.1e+02 Score=32.86 Aligned_cols=49 Identities=16% Similarity=0.258 Sum_probs=40.7
Q ss_pred CCceEEEEEEEecCCCCeeEEEccCCcceeeecccccEEEecCCCCCCcccc
Q 000310 1391 DKQFYEGTIKSYDPIKKKHVILYDDEDVEVLRLDKERWELLDNGRKPTKKSK 1442 (1680)
Q Consensus 1391 D~~~Y~G~V~~y~~~~~~H~v~YdDgd~E~l~L~~e~~~~~~~~~~~~~~~~ 1442 (1680)
+..||+|++.+.+....+..|+++||. ..+.++.++.++-.-.+..+.+
T Consensus 21 ~~~yYPa~~~~~~~~~~~~~V~Fedg~---~~i~~~dv~~LDlRIGD~Vkv~ 69 (131)
T PF08605_consen 21 NLKYYPATCVGSGVDRDRSLVRFEDGT---YEIKNEDVKYLDLRIGDTVKVD 69 (131)
T ss_pred CCeEeeEEEEeecCCCCeEEEEEecCc---eEeCcccEeeeeeecCCEEEEC
Confidence 789999999999888878999999999 4456677888888777766655
No 198
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=25.98 E-value=5e+02 Score=29.28 Aligned_cols=66 Identities=14% Similarity=0.176 Sum_probs=55.1
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHHhHHHHhc---CCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh
Q 000310 303 SVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT---DPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA 373 (1680)
Q Consensus 303 ~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~---~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~ 373 (1680)
..|...|.-+.+.+..||...++.+.-++.- || .+.+..|.-..-|++..||..|.....++....
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 3577888888999999999999999988863 55 378899999999999999999888887775433
No 199
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=25.73 E-value=3.2e+02 Score=36.39 Aligned_cols=173 Identities=13% Similarity=0.083 Sum_probs=104.0
Q ss_pred hhcccccCCChHHHHHHHHHHHHhhcC---CCCChhhhcHHHHH---HHHhhhcCCChhHHHHHHHHhHH------HHhc
Q 000310 266 YLTGELLTDQLDTRLKAVGLVGDLFAV---PGSANNEQFHSVFS---EFLKRLTDRIVAVRMSVLEHVKS------CLLT 333 (1680)
Q Consensus 266 ~Le~EL~sed~~~Rl~At~llG~mfs~---~~s~~a~~y~~~w~---~fL~R~~D~s~~VR~~~ve~~~~------iL~~ 333 (1680)
....+|.+-.+..|..+.+-.--|--. .+....+..-.++. .++. .-=++..+|.+|+.+.+. +|.+
T Consensus 335 f~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~-~~~kd~~~~aaa~l~~~s~srsV~aL~t 413 (678)
T KOG1293|consen 335 FICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCL-PPIKDHDFVAAALLCLKSFSRSVSALRT 413 (678)
T ss_pred HHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccc-cccccHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345677778888887766533211110 01122233333322 2221 122467888888877654 4555
Q ss_pred CCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHH-----HHHHHHHhhccCChhHHHHHHHHHHHHH
Q 000310 334 DPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE-----TVKLVAERLRDKSVLVKRYTMERLADIF 408 (1680)
Q Consensus 334 ~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~e-----lL~~LaeR~RDKK~~VR~eAm~~La~LY 408 (1680)
-+.+ .++..-|..-|+||+-.|-..+.-+||-+.. .|...-.. .+..|..-+.|+-+.+|+.+...|=
T Consensus 414 g~~~---~dv~~plvqll~dp~~~i~~~~lgai~NlVm-efs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr--- 486 (678)
T KOG1293|consen 414 GLKR---NDVAQPLVQLLMDPEIMIMGITLGAICNLVM-EFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLR--- 486 (678)
T ss_pred CCcc---chhHHHHHHHhhCcchhHHHHHHHHHHHHHh-hcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHH---
Confidence 5543 3688888889999999999999999988753 22222222 3568889999999999987776653
Q ss_pred HHhhhhccCCCcchhccccchHHHhhhhccCCCCchhHHHH
Q 000310 409 RGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESV 449 (1680)
Q Consensus 409 ~~~~~~~~~g~~~~~~~~wIPs~IL~~~Y~nD~~~~lVE~v 449 (1680)
+..+.. +...-..-+.-||...+.+ |+||++....|+.
T Consensus 487 ~l~f~~--de~~k~~~~~ki~a~~i~~-l~nd~d~~Vqeq~ 524 (678)
T KOG1293|consen 487 HLMFNC--DEEEKFQLLAKIPANLILD-LINDPDWAVQEQC 524 (678)
T ss_pred HHHhcc--hHHHHHHHHHHhhHHHHHH-HHhCCCHHHHHHH
Confidence 333321 0001123467889988876 5888764444444
No 200
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=24.94 E-value=1.7e+03 Score=29.50 Aligned_cols=49 Identities=20% Similarity=0.168 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCC
Q 000310 245 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG 294 (1680)
Q Consensus 245 ~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~ 294 (1680)
+..++..++...|+.|.+-+|.|...|..-++..|.+ +..+--+++...
T Consensus 182 LLrvlS~Vye~~P~~i~PhlP~l~~lL~q~~p~~~~l-l~~l~~LI~Qk~ 230 (851)
T KOG3723|consen 182 LLRVLSAVYEKQPQPINPHLPELLALLSQLEPEQYHL-LRLLHVLIKQKQ 230 (851)
T ss_pred HHHHHHHHHhcCCCccCcccHHHHHHhcCCCHHHHHH-HHHHHHHHHhcc
Confidence 5678889999999999999999999999999888654 455555666543
No 201
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=24.54 E-value=7.3e+02 Score=33.65 Aligned_cols=222 Identities=16% Similarity=0.215 Sum_probs=121.7
Q ss_pred ChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHhcCCC-----c----------H-----------HHHHHHHHHHHHh
Q 000310 163 HPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNK-----N----------D-----------TARRLAMNVIEQC 216 (1680)
Q Consensus 163 ~~~~V~~~m~~IL~~vI~Ese~vp~~vLd~IL~~l~~~k-----~----------~-----------~a~~lA~~v~~~~ 216 (1680)
.|..+...|-|..++.=-.++...+.++.-|=..|..+. + + .--+|..+||+--
T Consensus 455 ~PPGims~ldD~~At~Ha~~~~aDqa~~qrLn~~~~s~phF~~~s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm 534 (1106)
T KOG0162|consen 455 RPPGIMSALDDVCATAHADSEGADQALLQRLNKLFGSHPHFESRSNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELM 534 (1106)
T ss_pred CCchHHHHHHHHHHHhccccchhHHHHHHHHHHHhcCCCccccccCceEEEEeccceeeecccccccchhHHHHHHHHHH
Confidence 477788888888888888888888887776654553221 0 0 2246677777554
Q ss_pred hhhhHHHHHHHHHHhhcCCC--CCCCC--c--hhHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHH-HHHHHHHHHh
Q 000310 217 AGKLEAGIKQFLVSSMSGDS--RPGHS--H--IDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTR-LKAVGLVGDL 289 (1680)
Q Consensus 217 ~dkL~~~I~qyf~~il~~d~--~~~~~--~--~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~R-l~At~llG~m 289 (1680)
-..=.+.++..|-+-+..++ .+... . ..+.+|+-.|.+|.|..+-.+=|.=+- --.|=++-| +.-++-||--
T Consensus 535 ~ts~~~Fl~slFPe~v~~dskrRP~Tag~kIkkqANdLVeTLmKc~P~YIR~IKPNeTK-~pnD~ee~~V~HQveYLGLq 613 (1106)
T KOG0162|consen 535 QTSENPFLKSLFPENVDADSKRRPPTAGDKIKKQANDLVETLMKCQPHYIRCIKPNETK-SPNDWEESRVKHQVEYLGLQ 613 (1106)
T ss_pred hccchHHHHHhCchhhcccccCCCCCchhhHHhhHHHHHHHHHhcCcceeEeeCCCCCC-CCccHHHHHHHHHHHhcchh
Confidence 44444555555544333331 22221 2 258999999999999999888887322 222223333 3344544411
Q ss_pred hcCCC-CChhhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHH-HhhhCCChhHHHHHHHHHHH
Q 000310 290 FAVPG-SANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTAL-CDRLLDFDENVRKQVVAVIC 367 (1680)
Q Consensus 290 fs~~~-s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L-~~rL~D~DEkVR~aaV~ai~ 367 (1680)
= ... .-..=+|+.+|..|+.||.=.+|.- |-.+- +++ .+-++.+ .+--+++|+ --+-
T Consensus 614 E-NiRvRRAGfAYRr~F~kF~qRyailsp~t---~~twq---------GD~-~~av~~il~~~~m~~~q-yQmG------ 672 (1106)
T KOG0162|consen 614 E-NIRVRRAGFAYRRAFDKFAQRYAILSPQT---WPTWQ---------GDE-KQAVEHILRDVNMPSDQ-YQMG------ 672 (1106)
T ss_pred h-heeehhhhhHHHHHHHHHHHHheecCccc---ccccc---------cch-HHHHHHHHHhcCCChhH-hhcc------
Confidence 0 000 0112368999999999998888765 43221 122 2222222 222333332 1111
Q ss_pred HhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhh
Q 000310 368 DVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCL 413 (1680)
Q Consensus 368 ~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~ 413 (1680)
....|-.-|+.++ +.|-||||++.== ..++-+.|+.+..
T Consensus 673 --~tkVFiKnPEsLF--~LEemRer~~d~~---A~~IQkAWRrfv~ 711 (1106)
T KOG0162|consen 673 --VTKVFIKNPESLF--LLEEMRERKWDGM---ARRIQKAWRRFVA 711 (1106)
T ss_pred --ceeEEecChHHHH--HHHHHHHHHhhHH---HHHHHHHHHHHHH
Confidence 1122334466655 5688999988521 1233456776654
No 202
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=24.49 E-value=26 Score=40.90 Aligned_cols=18 Identities=39% Similarity=0.577 Sum_probs=12.9
Q ss_pred cccccccCCCCCCccccc
Q 000310 1610 SREEANEDGKSDSEGNEE 1627 (1680)
Q Consensus 1610 ~~~~~~~~~~~d~~~~~~ 1627 (1680)
+++++++++++|+++.++
T Consensus 244 s~~d~d~e~esd~de~Ee 261 (303)
T KOG3064|consen 244 SDEDSDSEDESDSDEIEE 261 (303)
T ss_pred cccccccccCCchhhHHH
Confidence 666767788887777654
No 203
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=24.29 E-value=6.9e+02 Score=31.59 Aligned_cols=123 Identities=17% Similarity=0.243 Sum_probs=83.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhcchhhhcCCCcchHHHHHHHHHHHhhhcCCCCCCC--h
Q 000310 18 TPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYS--D 95 (1680)
Q Consensus 18 ~~~~s~~eLlkrLk~L~~~Ls~~dQ~~~~~~~~sl~~~~~~Lv~~~LL~HkD~~Vra~vAcCLadIlRI~APdAPyt--d 95 (1680)
.||......+..|.+|-+.+.. |+. ..+..-++.+.-.|...-++-|--.-||..+.--|-.|++-+. ..+.. .
T Consensus 223 ~p~p~l~~vL~fl~~Ll~~~~~--~~~-~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~-~~~~~~~~ 298 (373)
T PF14911_consen 223 APPPRLASVLAFLQQLLKRLQR--QNE-NQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQ-VGSSGEPR 298 (373)
T ss_pred CCCCcHHHHHHHHHHHHHhcCc--ccc-hhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHccc-ccCcchHH
Confidence 3667777788888888777652 222 2455556666777777777777677799998888888888655 12222 4
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHHhhc
Q 000310 96 DVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVAS 160 (1680)
Q Consensus 96 ~qLkdIF~l~i~qf~~L~d~~~p~f~q~~~LLe~LA~vks~vl~~DL~~~~Li~~lF~~ff~~v~ 160 (1680)
+++..+|.-|+.---. -|-.+||.+|+++|+.. .++|..||-++=..+.
T Consensus 299 ~~l~s~lrsfvqk~l~------~~t~~~f~~l~~vA~l~----------p~lV~~Lip~i~q~l~ 347 (373)
T PF14911_consen 299 EQLTSVLRSFVQKYLA------HYTYQYFQFLEKVAELD----------PQLVISLIPTIRQSLK 347 (373)
T ss_pred HHHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHhC----------HHHHHHHHHHHHHHHH
Confidence 7888888888874322 24478999999999864 4566666666555444
No 204
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=23.48 E-value=5e+02 Score=31.87 Aligned_cols=161 Identities=10% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcC----------CChhh-----HHHHHHHHHHHHhcccc-------cccHHHHHHHHHHhcCCCcH--
Q 000310 148 VNEMYSTFFAVASD----------DHPES-----VLSSMQTIMIVLLEESE-------DIQEDLLVILLSALGRNKND-- 203 (1680)
Q Consensus 148 i~~lF~~ff~~v~~----------~~~~~-----V~~~m~~IL~~vI~Ese-------~vp~~vLd~IL~~l~~~k~~-- 203 (1680)
+..+++.+.+.++. .++.- |...++.++...|+-++ .+=+.+++.+|.-...+...
T Consensus 9 ~l~lY~~~s~~i~~~v~~~G~~~~~~~~~~~lr~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r 88 (319)
T PF08767_consen 9 MLNLYRAYSQIISQAVAESGEIATKTPKVRLLRTIKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAR 88 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHH-GGGGGSHHHHHHHHHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS
T ss_pred HHHHHHHHHHHHHHHHHhcCchhhccHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q ss_pred --HHHHHHHHHHHHhhhhhHHHHHHHHHHhhc--------CCCCCCCCchhHHHHHHHHHhhcchhhh--------hhhh
Q 000310 204 --TARRLAMNVIEQCAGKLEAGIKQFLVSSMS--------GDSRPGHSHIDYHEVIYDVYRCSPQILS--------GVVP 265 (1680)
Q Consensus 204 --~a~~lA~~v~~~~~dkL~~~I~qyf~~il~--------~d~~~~~~~~~~h~Li~eL~~~~P~lL~--------~ViP 265 (1680)
..-.+...||++-.+.+.+.+.+.|..+.. +...-.+-....+.++..+.+.||..|. .++-
T Consensus 89 ~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~id 168 (319)
T PF08767_consen 89 EPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVID 168 (319)
T ss_dssp -HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHH
Q ss_pred hhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhhh
Q 000310 266 YLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRL 312 (1680)
Q Consensus 266 ~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~ 312 (1680)
.+..-+++.+.++-..+.+.+..|+. ++....++.-++|...+
T Consensus 169 si~wg~kh~~~~I~~~~L~~l~~ll~----~~~~~~~~~~~~F~~~y 211 (319)
T PF08767_consen 169 SIVWGFKHTNREISETGLNILLELLN----NVSKTNPEFANQFYQQY 211 (319)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHHHHH----HHHH-SHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHH----HHHhcCHHHHHHHHHHH
No 205
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=22.40 E-value=9.9e+02 Score=28.56 Aligned_cols=101 Identities=18% Similarity=0.103 Sum_probs=64.3
Q ss_pred hHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCC---CChhhhcHHHHHHHHhhhcCCChhHH
Q 000310 244 DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG---SANNEQFHSVFSEFLKRLTDRIVAVR 320 (1680)
Q Consensus 244 ~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~---s~~a~~y~~~w~~fL~R~~D~s~~VR 320 (1680)
+.+.+++.+..-.++.|...|-. ..-++=+|..|...|+.+..... -...+-|+.+++.++.| .++.
T Consensus 100 ~l~~ilasv~~G~~~~L~~li~~-----~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~----~~~~- 169 (249)
T PF06685_consen 100 DLPRILASVGDGDIEPLKELIED-----PDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLER----NPSF- 169 (249)
T ss_pred HHHHHHHHHhCCCHHHHHHHHhC-----CcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcc----CchH-
Confidence 46778887777777777765421 12357799999999998887642 12455556666666654 4444
Q ss_pred HHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChh
Q 000310 321 MSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDE 356 (1680)
Q Consensus 321 ~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DE 356 (1680)
.|-..+..|+--+|. +...+|-+++..-|+|+.=
T Consensus 170 -~~~~Lv~~~~dL~~~-EL~~~I~~~f~~~lVd~~~ 203 (249)
T PF06685_consen 170 -LWGSLVADICDLYPE-ELLPEIRKAFEDGLVDPSF 203 (249)
T ss_pred -HHHHHHHHHHhcCHH-HhHHHHHHHHHcCCCCccc
Confidence 666666666655553 3345666677777777643
No 206
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=21.76 E-value=6.6e+02 Score=27.38 Aligned_cols=74 Identities=18% Similarity=0.129 Sum_probs=55.2
Q ss_pred CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh-----cCCCCHHHHHHHHHhhcc-CChhHHHHHHHHHHHHHHHh
Q 000310 338 ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-----LNSIPVETVKLVAERLRD-KSVLVKRYTMERLADIFRGC 411 (1680)
Q Consensus 338 ~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~-----l~~V~~elL~~LaeR~RD-KK~~VR~eAm~~La~LY~~~ 411 (1680)
....+.+.+|.+||...+.+|=+.|+..+-.+.... ....+.+++..|...+.+ -...||..++..+-.....+
T Consensus 33 ~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 33 NGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence 346799999999999999999999988887776532 234466777777666666 46789998888776644443
No 207
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=21.59 E-value=3.4e+02 Score=30.06 Aligned_cols=76 Identities=16% Similarity=0.104 Sum_probs=44.7
Q ss_pred hhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhH
Q 000310 317 VAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLV 396 (1680)
Q Consensus 317 ~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~V 396 (1680)
-..|..|+-.+..+.. ......+++.+...+.|.+.-||.++--++.+++.. -|..++..+.....+.....
T Consensus 120 ~~rR~~~~~~~~~~~~----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~----~~~~v~~~l~~~~~~~~~~t 191 (197)
T cd06561 120 WVRRAAIVLLLRLIKK----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK----DPERVIAFLEKNGLSMPRLT 191 (197)
T ss_pred HHHHHHHHHHHHHHHh----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh----CHHHHHHHHHHHHHhCChHH
Confidence 3455556666555443 112446677777777778888888887777777666 34445555544444444444
Q ss_pred HHHH
Q 000310 397 KRYT 400 (1680)
Q Consensus 397 R~eA 400 (1680)
.++|
T Consensus 192 ~r~a 195 (197)
T cd06561 192 LRYA 195 (197)
T ss_pred HHHH
Confidence 4444
No 208
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=21.53 E-value=8.9e+02 Score=27.91 Aligned_cols=103 Identities=13% Similarity=0.093 Sum_probs=68.1
Q ss_pred hhHHhHHHHHHHhcchhhhcCCCcchHHHHHHHHHHHhhhcCCCCCCChhH-------HHHHHHHHHHhccCCCCCCCCC
Q 000310 47 SILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDV-------LKDIFQLIVGTFSGLKDTGGPS 119 (1680)
Q Consensus 47 ~~~~sl~~~~~~Lv~~~LL~HkD~~Vra~vAcCLadIlRI~APdAPytd~q-------LkdIF~l~i~qf~~L~d~~~p~ 119 (1680)
.|-...+.++..|+...+=.+....-.++++|||+-|--==.+|+-|+.+. --.||..|-+-+.-.
T Consensus 30 ~dFr~~rdi~e~ll~~~~~~~a~~~k~l~i~QfLsRI~eG~~LD~~Fd~~~~~TPLESAl~v~~~I~~E~~~~------- 102 (200)
T cd00280 30 EDFRRTRDIAEALLVGPLKLTATQLKTLRIMQFLSRIAEGKNLDCQFENDEELTPLESALMVLESIEKEFSLP------- 102 (200)
T ss_pred HHHHHHHHHHHHHHhccccccccchhHhHHHHHHHHHHcCCCCCCccCCCCCcChHHHHHHHHHHHHHhcCCc-------
Confidence 466677888888888777677777788999999876555456899997533 346777776655421
Q ss_pred hhhHHHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHH
Q 000310 120 FGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFA 157 (1680)
Q Consensus 120 f~q~~~LLe~LA~vks~vl~~DL~~~~Li~~lF~~ff~ 157 (1680)
..-+..++.+-.+..+++|..-.--+.-.++++.+|.
T Consensus 103 -~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 103 -ETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 1234455556666666666554444566677777776
Done!