Query 000310
Match_columns 1680
No_of_seqs 277 out of 463
Neff 5.7
Searched_HMMs 29240
Date Tue Mar 26 16:46:25 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000310.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_89-92//hhsearch_pdb/000310hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b3u_A Protein (protein phosph 1.0 1 1 91.5 35.3 290 64-409 18-310 (588)
2 4fdd_A Transportin-1; heat rep 1.0 1 1 85.8 53.3 51 357-407 336-386 (852)
3 4fdd_A Transportin-1; heat rep 1.0 1 1 81.9 55.9 146 261-406 127-282 (852)
4 2bpt_A Importin beta-1 subunit 1.0 1 1 79.6 52.3 679 68-865 53-813 (861)
5 1b3u_A Protein (protein phosph 1.0 1 1 78.9 33.2 18 881-898 528-545 (588)
6 1u6g_C TIP120 protein, CAND1; 1.0 1 1 78.9 47.4 47 850-901 947-994 (1230)
7 1qgr_A Protein (importin beta 1.0 1 1 78.1 55.4 226 626-867 582-831 (876)
8 1u6g_C TIP120 protein, CAND1; 1.0 1 1 76.3 69.2 242 52-312 46-305 (1230)
9 2bpt_A Importin beta-1 subunit 1.0 1 1 74.2 53.2 148 262-409 134-295 (861)
10 2vgl_B AP-2 complex subunit be 1.0 1 1 68.9 34.4 222 624-891 298-522 (591)
No 1
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=91.46 Aligned_cols=290 Identities=13% Similarity=0.144 Sum_probs=113.3
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 10589821278889998778651299999991589999999998216998889987146999999998432521001698
Q 000310 64 LLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLE 143 (1680)
Q Consensus 64 LL~HkD~~Vr~~vAcCLadIlRI~APdaPytd~~LkdIF~l~i~ql~~L~d~~~p~f~q~~~LLE~LA~vks~vl~~DL~ 143 (1680)
.|+|.|.++|..++-+|+.|.+..-| +....++..++.... |. ++ .-+..+.+.|..+-. .+.
T Consensus 18 ~l~s~~~~~R~~A~~~l~~i~~~~~~-----~~~~~~l~~~L~~~~----d~-~~--~vr~~~~~~L~~~~~-----~~~ 80 (588)
T 1b3u_A 18 ELRNEDVQLRLNSIKKLSTIALALGV-----ERTRSELLPFLTDTI----YD-ED--EVLLALAEQLGTFTT-----LVG 80 (588)
T ss_dssp HTTCSCHHHHHHHHHTHHHHHHHSCH-----HHHHHTHHHHHHHTC----CC-CH--HHHHHHHHHHTTCSG-----GGT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHCH-----HHHHHHHHHHHHHHC----CC-CH--HHHHHHHHHHHHHHH-----CCC
T ss_conf 85062199999999719999998697-----989998998898755----78-58--999999999977876-----058
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC--CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 41899999999997324998251999999999999602445--5388999999971379857899999999999545447
Q 000310 144 CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESED--IQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLE 221 (1680)
Q Consensus 144 ~~~Li~~lF~~ff~iv~~~~~~~V~~~m~~IL~~iI~Ese~--Ip~~vLd~IL~~l~~~k~~~A~~lA~~ii~~~~dkL~ 221 (1680)
..+....++..+..... +....|.......|..+...... +...++. ++..+........+..|..++......+.
T Consensus 81 ~~~~~~~ll~~L~~l~~-~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~-~l~~l~~~~~~~~R~~a~~~l~~~~~~~~ 158 (588)
T 1b3u_A 81 GPEYVHCLLPPLESLAT-VEETVVRDKAVESLRAISHEHSPSDLEAHFVP-LVKRLAGGDWFTSRTSACGLFSVCYPRVS 158 (588)
T ss_dssp SGGGGGGGHHHHHHHTT-SSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHH-HHHHHHTCSSHHHHHHHGGGHHHHTTTSC
T ss_pred CHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 59899998999999874-76079999999999999997999999999999-99998507771799999999999998569
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHC
Q ss_conf 99999999830699999887303889999998416303431121120123577768999999999986248999802004
Q 000310 222 AGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQF 301 (1680)
Q Consensus 222 ~~I~qyf~sil~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y 301 (1680)
. .....++|.+..-+..++..+|..|.+.+|.+...-+.. ...
T Consensus 159 ~-----------------------------------~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~ 201 (588)
T 1b3u_A 159 S-----------------------------------AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVK 201 (588)
T ss_dssp H-----------------------------------HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHH
T ss_pred H-----------------------------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHH--HHH
T ss_conf 9-----------------------------------999999999999848997889999999899999981677--679
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-CCCCCHH
Q ss_conf 999999983005999339999999969878319999986789999986607971679999999999965321-3788988
Q 000310 302 HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-LNSIPVE 380 (1680)
Q Consensus 302 ~~~w~~fL~R~~Dks~~VR~~~V~~~~~iL~s~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~-l~~V~~e 380 (1680)
+.+...++.-.+|.++.||...+++...+....+.......+++.+...+.|.+++||.+++.+++.++... ...+...
T Consensus 202 ~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ 281 (588)
T 1b3u_A 202 SEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTD 281 (588)
T ss_dssp HTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99999999882499288999899999999985798888878999999980699778999999999999998195210558
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 89999976036893699999999999999
Q 000310 381 TVKLVAERLRDKSVLVKRYTMERLADIFR 409 (1680)
Q Consensus 381 lL~~laeR~RDKK~~VRkeAi~~La~LY~ 409 (1680)
++..+...+.|..+.||..|...|+.+..
T Consensus 282 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 310 (588)
T 1b3u_A 282 LVPAFQNLMKDCEAEVRAAASHKVKEFCE 310 (588)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999998589958999999987999999
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=85.85 Aligned_cols=51 Identities=24% Similarity=0.168 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 799999999999653213788988899999760368936999999999999
Q 000310 357 NVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1680)
Q Consensus 357 kVR~aaVkai~~la~~~l~~V~~elL~~laeR~RDKK~~VRkeAi~~La~L 407 (1680)
.||.++..++..++......+-..++..+.+.+.|..+.||..|+..|+.+
T Consensus 336 ~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i 386 (852)
T 4fdd_A 336 NLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAI 386 (852)
T ss_dssp CHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 699999999999987461878999999999985599889999999999999
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=81.89 Aligned_cols=146 Identities=14% Similarity=0.172 Sum_probs=66.0
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHH-----HCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 311211201235777689999999999862489998020-----049999999830059993399999999698783199
Q 000310 261 SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE-----QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDP 335 (1680)
Q Consensus 261 ~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~-----~y~~~w~~fL~R~~Dks~~VR~~~V~~~~~iL~s~p 335 (1680)
...+|.|..-+.+.+..+|..|..+++.++...+..+.. ....++..++.-+.|.++.||...+++...++...+
T Consensus 127 p~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~ 206 (852)
T 4fdd_A 127 PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRT 206 (852)
T ss_dssp TTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 89999999987099989999999999999998578756343133299999999998567978999999999999986463
Q ss_pred C--CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 9--99867899999866079716799999999999653213788---98889999976036893699999999999
Q 000310 336 S--RADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI---PVETVKLVAERLRDKSVLVKRYTMERLAD 406 (1680)
Q Consensus 336 ~--~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~V---~~elL~~laeR~RDKK~~VRkeAi~~La~ 406 (1680)
. .....++++.|...+.|.|+.||.+++.+++.++......+ -..++..+...+.|....||..|++.+..
T Consensus 207 ~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~ 282 (852)
T 4fdd_A 207 QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLT 282 (852)
T ss_dssp HHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 8799889999999998717997789999999999999857798998899999999987069968999999999999
No 4
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=79.57 Aligned_cols=679 Identities=13% Similarity=0.124 Sum_probs=297.9
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCC---------CC-CCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 98212788899987786512999---------99-991589999999998216998889987146999999998432521
Q 000310 68 QDKDVKLLVATCICEITRITAPE---------AP-YSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCV 137 (1680)
Q Consensus 68 kD~~Vr~~vAcCLadIlRI~APd---------aP-ytd~~LkdIF~l~i~ql~~L~d~~~p~f~q~~~LLE~LA~vks~v 137 (1680)
.+..||.+.|..|-..++-+-+. .. .++++...|-..++..+. +++ +. . +..+-..++.+-
T Consensus 53 ~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~---~~~-~~-v-r~~~~~~l~~i~--- 123 (861)
T 2bpt_A 53 TKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALV---SIE-PR-I-ANAAAQLIAAIA--- 123 (861)
T ss_dssp SCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHT---CSS-HH-H-HHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC---CCC-HH-H-HHHHHHHHHHHH---
T ss_conf 98679999999987022575748789999767662999999999999999877---996-37-9-999999999999---
Q ss_pred HCCCCCC---HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC-------CCHHHHHHHHHHHCCCC-CHHHH
Q ss_conf 0016984---1899999999997324998251999999999999602445-------53889999999713798-57899
Q 000310 138 VMLDLEC---DELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESED-------IQEDLLVILLSALGRNK-NDTAR 206 (1680)
Q Consensus 138 l~~DL~~---~~Li~~lF~~ff~iv~~~~~~~V~~~m~~IL~~iI~Ese~-------Ip~~vLd~IL~~l~~~k-~~~A~ 206 (1680)
..++|. .+++..+ +..+..+....+......++..+.++... .-..++..++..+.... +..-+
T Consensus 124 -~~~~p~~~w~~ll~~L----~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr 198 (861)
T 2bpt_A 124 -DIELPHGAWPELMKIM----VDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVR 198 (861)
T ss_dssp -HHHGGGTCCHHHHHHH----HHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHH
T ss_pred -HHHCCCCCCHHHHHHH----HHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf -8467645549999999----99872689789999999999999972784356789889999999998415799987899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 99999999954544799999999830699999887303889999998416303431121120123577768999999999
Q 000310 207 RLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLV 286 (1680)
Q Consensus 207 ~lA~~ii~~~~dkL~~~I~qyf~sil~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViPqLe~EL~sed~~~Rl~At~ll 286 (1680)
..|...+..+...+... +.. . .. | .. +++.|..-+.+++..+|..|.+.+
T Consensus 199 ~~al~~l~~~~~~~~~~--------~~~-------~-~~-------~----~~---ll~~l~~~~~~~~~~~r~~a~~~l 248 (861)
T 2bpt_A 199 LAALNALADSLIFIKNN--------MER-------E-GE-------R----NY---LMQVVCEATQAEDIEVQAAAFGCL 248 (861)
T ss_dssp HHHHHHHHHHGGGCHHH--------HTS-------H-HH-------H----HH---HHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--------CCC-------H-HH-------H----HH---HHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99999999999999987--------067-------6-68-------9----99---999999986599889999999999
Q ss_pred HHHHCCCCCCHHHHCH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC-------------CC--CC----CHHHHHHH
Q ss_conf 9862489998020049-99999983005999339999999969878319-------------99--99----86789999
Q 000310 287 GDLFAVPGSANNEQFH-SVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD-------------PS--RA----DAPQILTA 346 (1680)
Q Consensus 287 G~mfs~~~s~~a~~y~-~~w~~fL~R~~Dks~~VR~~~V~~~~~iL~s~-------------p~--~~----~~~eii~~ 346 (1680)
+++....+..+....+ .+|..++....|.+..||...+++...+.... |. .. ....+++.
T Consensus 249 ~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 328 (861)
T 2bpt_A 249 CKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPN 328 (861)
T ss_dssp HHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999988999998899999999998737727899999999999998788643332103577325699999999889999
Q ss_pred HHHHHCCCH-------HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 986607971-------6799999999999653213788988899999760368936999999999999998631104898
Q 000310 347 LCDRLLDFD-------ENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGS 419 (1680)
Q Consensus 347 L~~rL~D~D-------EkVR~aaVkai~~la~~~l~~V~~elL~~laeR~RDKK~~VRkeAi~~La~LY~~~~~~~~~g~ 419 (1680)
+...+.+.| ..||.++..++..++......+-..++..+.+.+.|..+.+|..|+..|+.+-.. +.. .
T Consensus 329 ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~-~~~----~ 403 (861)
T 2bpt_A 329 LLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDG-PDK----V 403 (861)
T ss_dssp HHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS-SCH----H
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC-CCH----H
T ss_conf 99998706653012468689999999999998740868999999999875799726999999999999859-987----8
Q ss_pred CCHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHH-H--HHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 520001662588863320277884048998420686999997999999-9--9998129999999999999999999999
Q 000310 420 INQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRH-W--VRIFSGFDRIEMKALEKILEQKQRLQQE 496 (1680)
Q Consensus 420 ~~~~~~~wIP~~IL~~~Y~~d~~~~lVE~vl~e~LlP~~~~~~~R~~~-l--l~l~~~LD~~~~kal~~il~~k~~l~~~ 496 (1680)
.....+..|-..++..+. | .++.-|... | ..+...+... + .....+...
T Consensus 404 ~~~~~l~~il~~l~~~l~--d------------------~~~~vr~~a~~~l~~l~~~~~~~-------~-~~~~~~~~~ 455 (861)
T 2bpt_A 404 QRTYYVHQALPSILNLMN--D------------------QSLQVKETTAWCIGRIADSVAES-------I-DPQQHLPGV 455 (861)
T ss_dssp HHHHHHHHHHHHHHHGGG--C------------------SCHHHHHHHHHHHHHHHHHHGGG-------S-CTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHCC--C------------------CCHHHHHHHHHHHHHHHHHHHHH-------C-CCHHHHHHH
T ss_conf 889989999999998828--9------------------95999999999999999873540-------4-878889999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHCCHHHHHHHHHHHC-CC--CCHH-HHHH
Q ss_conf 999999986513899289999999999998762399--3578899999884100889999999736-79--9999-9999
Q 000310 497 MQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAE--PAKAEENFLILDQLKDANVWKILMNLLD-SN--TSFD-QAFT 570 (1680)
Q Consensus 497 ~~~~l~l~~~~~~~d~~ei~~kl~~~i~~Ls~~fPD--p~Ka~~~L~kf~klnD~Ri~klLk~~id-p~--ts~k-tv~~ 570 (1680)
+..++... + +.+.+.......+..++..+++ +......+ ..++..|..+++ ++ ...+ .+..
T Consensus 456 l~~l~~~l---~--~~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--------~~il~~L~~~l~~~d~~~~vr~~a~~ 522 (861)
T 2bpt_A 456 VQACLIGL---Q--DHPKVATNCSWTIINLVEQLAEATPSPIYNFY--------PALVDGLIGAANRIDNEFNARASAFS 522 (861)
T ss_dssp HHHHHHHH---T--SCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--------HHHHHHHHHHHTCSCCGGGHHHHHHH
T ss_pred HHHHHHHH---C--CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH--------HHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 99999976---4--47289999999999999862313542468999--------99999999998575861589999999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC-------C----CCHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999558976599999999861002557668999999999610-------4----300465889999999998528
Q 000310 571 GRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQK-------S----SANAQFMQSCMDILGILARFS 639 (1680)
Q Consensus 571 a~kELlkkL~~k~~l~d~l~~Ll~R~S~lifNks~V~~LL~~v~~s~-------~----~~~~~~~~~a~eLL~~IS~~~ 639 (1680)
+...+....+.. ...++.. -++.++..+.... . +........+.+.|..+....
T Consensus 523 al~~l~~~~~~~--~~~~~~~-------------l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~ 587 (861)
T 2bpt_A 523 ALTTMVEYATDT--VAETSAS-------------ISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKS 587 (861)
T ss_dssp HHHHHHHHCCGG--GHHHHHH-------------HHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCHH--HHHHHHH-------------HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999976265--6999999-------------9999999999887532013885567779999999999999999985
Q ss_pred CCCCCCCHHHHHHH----HHHCCC-CCHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 95734449999999----751021-0047699999985030465320066228999998840599587999999999620
Q 000310 640 PLLLGGTEEELVNL----LKEENE-IIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAIT 714 (1680)
Q Consensus 640 P~lFk~~v~eLi~l----L~~~~~-~~~e~aLkiLak~~k~~~e~~~~~~s~l~~~L~~lal~Gtp~qAKyAVr~Laai~ 714 (1680)
+.-+..+...+... +...+. .+.+.++.++........+.+.+.-..+.+.|.+......+.....|+.++..+.
T Consensus 588 ~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~ 667 (861)
T 2bpt_A 588 PSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADIS 667 (861)
T ss_dssp GGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 56347899999999999974678875799999999999999766099999999999998865566789999999999999
Q ss_pred CCCCCC---HHHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 787321---4999999999852105----998348899999993314331450578999999835135666678877877
Q 000310 715 KDDGLK---SLSVLYKRLVDMLEEK----THLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACW 787 (1680)
Q Consensus 715 ~~~~~~---~~~~L~~~L~~~L~~~----~~l~s~L~sLa~Iaq~ap~vfe~~~~eI~~fIik~ILl~~~~~~~~~~~~W 787 (1680)
..-+.. .+..++..+...+... .--.+.+.+||.|++..+..|......|...++.-+-... +. ++.++
T Consensus 668 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~---~~-~d~d~ 743 (861)
T 2bpt_A 668 NSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKP---EN-GTLEA 743 (861)
T ss_dssp HHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCC---SS-SSHHH
T ss_pred HHHCHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CC-CCHHH
T ss_conf 874540311199999999997278655676659999999999998405089999999999999973678---99-97588
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 78615678999999999995159876--6643205889999999540376666778996667675799999999853104
Q 000310 788 DDRSELCLLKIYGIKTLVKSYLPVKD--AHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQW 865 (1680)
Q Consensus 788 ~d~s~~~~aKi~aLK~Lvn~ll~~~~--~~~~~~i~~ll~lL~~il~~GEi~~~~~tp~~~ksrLRLaAa~~lLKLAr~~ 865 (1680)
. ......+..+++++...+....+ ....+.+..++.+|...+...+ ..+...+|.+|..++-.|++.+
T Consensus 744 ~--~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~--------~~~~~~vr~~a~~~l~~l~~~~ 813 (861)
T 2bpt_A 744 L--DYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQ--------LYSEDATSRAAVGLIGDIAAMF 813 (861)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHH--------HHTSHHHHHHHHHHHHHHHHHC
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC--------CCCCHHHHHHHHHHHHHHHHHC
T ss_conf 9--99999999999999999999826778899999999999999874855--------5786999999999999999882
No 5
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=78.87 Aligned_cols=18 Identities=0% Similarity=-0.047 Sum_probs=7.5
Q ss_pred CCCCCHHHHHHHHHHHHH
Q ss_conf 467726699999999998
Q 000310 881 PEISFPQAKKLFLSKVHQ 898 (1680)
Q Consensus 881 ~qD~~~~VR~~Fl~KL~k 898 (1680)
.+|+.++||...+.-|..
T Consensus 528 l~d~~~~Vr~~a~~~l~~ 545 (588)
T 1b3u_A 528 AGDPVANVRFNVAKSLQK 545 (588)
T ss_dssp GGCSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
T ss_conf 789986279999999999
No 6
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=78.85 Aligned_cols=47 Identities=15% Similarity=0.078 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 5799999999853104-887788999998312467726699999999998673
Q 000310 850 LRLASAKAVLRLSRQW-DHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVK 901 (1680)
Q Consensus 850 LRLaAa~~lLKLAr~~-d~~I~~d~f~l~~~~~qD~~~~VR~~Fl~KL~kyL~ 901 (1680)
+|-.++.++=+|+... +.++| .+. ....|+...+|..-+.-+...+.
T Consensus 947 ~r~~~a~~lg~l~~~~~~~l~p----~l~-~~l~~~~~~~R~~~~~~l~~~~~ 994 (1230)
T 1u6g_C 947 TRNVVAECLGKLTLIDPETLLP----RLK-GYLISGSSYARSSVVTAVKFTIS 994 (1230)
T ss_dssp HHHHHHHHHHHHHHSSGGGTHH----HHT-TTSSSSCHHHHHHHHHHTGGGCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHH----HHH-HHHCCCCHHHHHHHHHHHHHHHC
T ss_conf 6899998875665067688889----999-98569978899999999999970
No 7
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=78.14 Aligned_cols=226 Identities=11% Similarity=0.055 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHCC-CCCCCCHHHHHH----HHHHCC--CCCHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHCC
Q ss_conf 899999999985289-573444999999----975102--1004769999998503046532006622899999884059
Q 000310 626 QSCMDILGILARFSP-LLLGGTEEELVN----LLKEEN--EIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEG 698 (1680)
Q Consensus 626 ~~a~eLL~~IS~~~P-~lFk~~v~eLi~----lL~~~~--~~~~e~aLkiLak~~k~~~e~~~~~~s~l~~~L~~lal~G 698 (1680)
..+...|..+....+ .-|..+...++. .+.... ..+.+.++.++..+.......+.+.-..+.+.|.......
T Consensus 582 ~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 661 (876)
T 1qgr_A 582 SLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNY 661 (876)
T ss_dssp HHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999982854205789999999999998536888850899999999999987609999999999999987586
Q ss_pred -CHHHHHHHHHHHHHHCCCCCC---CHHHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf -958799999999962078732---14999999999852105----9983488999999933143314505789999998
Q 000310 699 -SRRQAKYAVHALAAITKDDGL---KSLSVLYKRLVDMLEEK----THLPAVLQSLGCIAQTAMPVFETRESEIEEFIKS 770 (1680)
Q Consensus 699 -tp~qAKyAVr~Laai~~~~~~---~~~~~L~~~L~~~L~~~----~~l~s~L~sLa~Iaq~ap~vfe~~~~eI~~fIik 770 (1680)
.+..-+.|+.+|..+...-+. .....++..+...|... .-....+.++|.|+...+..|......|...+.+
T Consensus 662 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~ 741 (876)
T 1qgr_A 662 AEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQ 741 (876)
T ss_dssp TTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_conf 50879999999999999988785464599999999997487123387639999999999997035279999999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC---------CCCCCCHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 3513566667887787778615678999999999995159876---------6643205889999999540376666778
Q 000310 771 KILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKD---------AHIRPGIDDLLGILKSMLSYGEMSEDIE 841 (1680)
Q Consensus 771 ~ILl~~~~~~~~~~~~W~d~s~~~~aKi~aLK~Lvn~ll~~~~---------~~~~~~i~~ll~lL~~il~~GEi~~~~~ 841 (1680)
-+ ... . + .++++|.++ ....+...++++...+.+... ....+.+..++.++..+... +
T Consensus 742 ~~-~~~-~-~-~~d~~~~~~--~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-------~ 808 (876)
T 1qgr_A 742 AS-QAQ-V-D-KSDYDMVDY--LNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGD-------E 808 (876)
T ss_dssp HH-TCC-C-C-TTCHHHHHH--HHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTC-------S
T ss_pred HH-HCC-C-C-CCCHHHHHH--HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-------C
T ss_conf 98-555-8-9-997588999--99999999999999999974575555543889999999999999998658-------8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99666767579999999985310488
Q 000310 842 SSSVDKAHLRLASAKAVLRLSRQWDH 867 (1680)
Q Consensus 842 tp~~~ksrLRLaAa~~lLKLAr~~d~ 867 (1680)
. .-...|-.|..++=.|+..+..
T Consensus 809 ~---~~~~vr~~a~~~l~~l~~~~~~ 831 (876)
T 1qgr_A 809 D---HTDGVVACAAGLIGDLCTAFGK 831 (876)
T ss_dssp C---CCHHHHHHHHHHHHHHHHHHCT
T ss_pred C---CCHHHHHHHHHHHHHHHHHHCC
T ss_conf 8---8889999999999999988284
No 8
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=76.27 Aligned_cols=242 Identities=14% Similarity=0.154 Sum_probs=115.1
Q ss_pred HHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 89999983202110589821278889998778651299999991589999999998216998889987146999999998
Q 000310 52 MQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLA 131 (1680)
Q Consensus 52 l~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~APdaPytd~~LkdIF~l~i~ql~~L~d~~~p~f~q~~~LLE~LA 131 (1680)
...+...|+. .|.+++..||..++-||..+..-+.+ .++..|+..++..+ .|++.. . +......++
T Consensus 46 ~~~il~~Ll~--~L~d~~~~vR~~A~~~L~~l~~~~~~------~~~~~i~~~Ll~~l---~d~~~~--v-R~~a~~~L~ 111 (1230)
T 1u6g_C 46 ERKVVKMILK--LLEDKNGEVQNLAVKCLGPLVSKVKE------YQVETIVDTLCTNM---LSDKEQ--L-RDISSIGLK 111 (1230)
T ss_dssp HHHHHHHHHH--HTTCSSHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHHHHT---TCSSSH--H-HHHHHHHHH
T ss_pred HHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHH---CCCCHH--H-HHHHHHHHH
T ss_conf 9999999999--86699989999999999999975879------89999999999986---698388--9-999999999
Q ss_pred HHHHHHHCCCCC------CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC-C---CHHHHHHHHHHHCCCC
Q ss_conf 432521001698------41899999999997324998251999999999999602445-5---3889999999713798
Q 000310 132 KYRSCVVMLDLE------CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESED-I---QEDLLVILLSALGRNK 201 (1680)
Q Consensus 132 ~vks~vl~~DL~------~~~Li~~lF~~ff~iv~~~~~~~V~~~m~~IL~~iI~Ese~-I---p~~vLd~IL~~l~~~k 201 (1680)
.+-.. +.-+ ......+++..++....++....+......++..+++.... + -..++..++..+...
T Consensus 112 ~i~~~---l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~- 187 (1230)
T 1u6g_C 112 TVIGE---LPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSP- 187 (1230)
T ss_dssp HHHHH---CC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCS-
T ss_pred HHHHH---CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-
T ss_conf 99996---79744444117889999999999987578846799999999999999827677887999999999987599-
Q ss_pred CHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHH----HHHHHHHHCCCCCC
Q ss_conf 578999999999995454479----9999999830699999887303889999998416303----43112112012357
Q 000310 202 NDTARRLAMNVIEQCAGKLEA----GIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQI----LSGVVPYLTGELLT 273 (1680)
Q Consensus 202 ~~~A~~lA~~ii~~~~dkL~~----~I~qyf~sil~~d~~~~~~~~~~h~Li~eL~~~~P~l----L~~ViPqLe~EL~s 273 (1680)
...-+.-|...+...+..+.. .+-.++...+..+.. ......+-+.+..|.+..|.. +..++|.+-..+..
T Consensus 188 ~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~-~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d 266 (1230)
T 1u6g_C 188 RLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDS-MSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNV 266 (1230)
T ss_dssp SHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCS-SCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 6899999999999999856899999999999998616775-568999999999999986898998899999999998668
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHHHHHHH
Q ss_conf 776899999999998624899980200499999998300
Q 000310 274 DQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRL 312 (1680)
Q Consensus 274 ed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~ 312 (1680)
++..+|..|...++.+...-+..+..-.+.+...++...
T Consensus 267 ~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l 305 (1230)
T 1u6g_C 267 DDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYL 305 (1230)
T ss_dssp CCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_conf 977899999999999999784877776899999999982
No 9
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=74.18 Aligned_cols=148 Identities=11% Similarity=0.183 Sum_probs=62.6
Q ss_pred HHHHHHCCCCCCC-CHHHHHHHHHHHHHHHCCCCCC---HHHHCHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHC--
Q ss_conf 1121120123577-7689999999999862489998---0200499999998300599--933999999996987831--
Q 000310 262 GVVPYLTGELLTD-QLDTRLKAVGLVGDLFAVPGSA---NNEQFHSVFSEFLKRLTDR--IVAVRMSVLEHVKSCLLT-- 333 (1680)
Q Consensus 262 ~ViPqLe~EL~se-d~~~Rl~At~llG~mfs~~~s~---~a~~y~~~w~~fL~R~~Dk--s~~VR~~~V~~~~~iL~s-- 333 (1680)
.++|.|..-+.++ +..+|..|..+++.++..-+.. +....+.++..|+....|. ++.||...+++...++..
T Consensus 134 ~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~ 213 (861)
T 2bpt_A 134 ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIK 213 (861)
T ss_dssp HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999872689789999999999999972784356789889999999998415799987899999999999999999
Q ss_pred -CCCCC-CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCH----HHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf -99999-86789999986607971679999999999965321378898----8899999760368936999999999999
Q 000310 334 -DPSRA-DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV----ETVKLVAERLRDKSVLVKRYTMERLADI 407 (1680)
Q Consensus 334 -~p~~~-~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~V~~----elL~~laeR~RDKK~~VRkeAi~~La~L 407 (1680)
+.... ....++..|...+.|.+++||.+++.++..++......+.. .++..+...+.|....||..|+..+..+
T Consensus 214 ~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l 293 (861)
T 2bpt_A 214 NNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTI 293 (861)
T ss_dssp HHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 87067668999999999986599889999999999999999889999988999999999987377278999999999999
Q ss_pred HH
Q ss_conf 99
Q 000310 408 FR 409 (1680)
Q Consensus 408 Y~ 409 (1680)
..
T Consensus 294 ~~ 295 (861)
T 2bpt_A 294 CE 295 (861)
T ss_dssp HH
T ss_pred HH
T ss_conf 98
No 10
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=1.00 E-value=1 Score=68.90 Aligned_cols=222 Identities=13% Similarity=0.124 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf 58899999999985289573444999999975102100476999999850304653200662289999988405995879
Q 000310 624 FMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQA 703 (1680)
Q Consensus 624 ~~~~a~eLL~~IS~~~P~lFk~~v~eLi~lL~~~~~~~~e~aLkiLak~~k~~~e~~~~~~s~l~~~L~~lal~Gtp~qA 703 (1680)
..-.+.+-|..|...+|.+|..+...+.... +++..+...+|.+|++.+.. ++. ..+...|..+.....+.-.
T Consensus 298 vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~-~d~~~Ir~~al~~L~~l~~~--~nv----~~iv~~L~~~l~~~d~~~r 370 (591)
T 2vgl_B 298 VQYVALRNINLIVQKRPEILKQEIKVFFVKY-NDPIYVKLEKLDIMIRLASQ--ANI----AQVLAELKEYATEVDVDFV 370 (591)
T ss_dssp HHHHHHHHHHHHHHHCCSTTTTCTTTTSCCT-TSCHHHHHHHHHHHHHTCCS--STH----HHHHHHHHHHTTSSCHHHH
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHEECC-CCHHHHHHHHHHHHHHHCCH--HHH----HHHHHHHHHHHHCCCHHHH
T ss_conf 8999999999999869698999887550036-99399999999999987786--239----9999999999865799999
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999620787321499999999985210599--8348899999993314331450578999999835135666678
Q 000310 704 KYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTH--LPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRN 781 (1680)
Q Consensus 704 KyAVr~Laai~~~~~~~~~~~L~~~L~~~L~~~~~--l~s~L~sLa~Iaq~ap~vfe~~~~eI~~fIik~ILl~~~~~~~ 781 (1680)
+.|+++|+.+...-. .....++..|++.+..... ....+.++..|.+..|...+. ++..+..- |...
T Consensus 371 ~~~v~aI~~la~~~~-~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~----~v~~L~~~-l~~~----- 439 (591)
T 2vgl_B 371 RKAVRAIGRCAIKVE-QSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYES----IIATLCEN-LDSL----- 439 (591)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCT----THHHHHHT-TTTC-----
T ss_pred HHHHHHHHHHHHHCH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHH----HHHHHHHH-HHHC-----
T ss_conf 999999999998574-679999999999983551689999999999999979205789----99999988-8742-----
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 87787778615678999999999995159876664320588999999954037666677899666767579999999985
Q 000310 782 DTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRL 861 (1680)
Q Consensus 782 ~~~~~W~d~s~~~~aKi~aLK~Lvn~ll~~~~~~~~~~i~~ll~lL~~il~~GEi~~~~~tp~~~ksrLRLaAa~~lLKL 861 (1680)
..+ .++..+ -|++|--..... ... .+|..++. .+.. .-...|+++-.++.||
T Consensus 440 -------~~~---~~~~~~-----~wilGey~~~~~-~~~---~~l~~l~~--~~~~-------~~~~vr~~~l~a~~Kl 491 (591)
T 2vgl_B 440 -------DEP---DARAAM-----IWIVGEYAERID-NAD---ELLESFLE--GFHD-------ESTQVQLTLLTAIVKL 491 (591)
T ss_dssp -------CSH---HHHHHH-----HHHHHTTCTTCT-THH---HHHHHHST--TCSS-------SCHHHHHHHHHHHHHH
T ss_pred -------CCH---HHHHHH-----HHHHHCCCCCCC-CHH---HHHHHHHH--HHCC-------CCHHHHHHHHHHHHHH
T ss_conf -------378---999999-----999970312136-789---99999998--6645-------9888999999999999
Q ss_pred HHCCCCCCCHHHHHHHHHCCCC-CCHHHHHH
Q ss_conf 3104887788999998312467-72669999
Q 000310 862 SRQWDHKIPVDVFHLTLRTPEI-SFPQAKKL 891 (1680)
Q Consensus 862 Ar~~d~~I~~d~f~l~~~~~qD-~~~~VR~~ 891 (1680)
.........+.+.+++.....| ..++||.+
T Consensus 492 ~~~~p~~~~~~i~~ll~~~~~d~~d~evrdR 522 (591)
T 2vgl_B 492 FLKKPSETQELVQQVLSLATQDSDNPDLRDR 522 (591)
T ss_dssp HTTCCSTTHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 9619657999999999986535899679999
Done!