Query 000315
Match_columns 1678
No_of_seqs 279 out of 462
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 04:01:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000315.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000315hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1525 Sister chromatid cohes 100.0 8E-137 2E-141 1329.8 82.6 1067 10-1104 6-1119(1266)
2 KOG1525 Sister chromatid cohes 99.7 5.3E-14 1.2E-18 186.4 49.5 490 640-1252 583-1087(1266)
3 PF09465 LBR_tudor: Lamin-B re 99.0 1.3E-09 2.8E-14 95.4 6.4 45 1378-1422 6-50 (55)
4 PTZ00429 beta-adaptin; Provisi 98.6 0.0001 2.2E-09 96.8 38.7 392 269-755 39-437 (746)
5 KOG2171 Karyopherin (importin) 98.6 0.00052 1.1E-08 90.7 42.3 550 223-855 5-595 (1075)
6 KOG1020 Sister chromatid cohes 98.2 0.015 3.3E-07 78.7 43.3 135 297-443 810-945 (1692)
7 PTZ00429 beta-adaptin; Provisi 98.2 0.0047 1E-07 81.6 37.3 337 246-672 89-431 (746)
8 KOG1824 TATA-binding protein-i 98.1 0.12 2.6E-06 67.8 47.6 382 21-434 24-484 (1233)
9 PF01602 Adaptin_N: Adaptin N 98.0 0.0019 4.1E-08 82.1 28.5 117 245-369 62-179 (526)
10 KOG1020 Sister chromatid cohes 98.0 0.1 2.2E-06 71.3 43.1 341 61-413 588-964 (1692)
11 PF01602 Adaptin_N: Adaptin N 97.6 0.086 1.9E-06 67.2 33.4 239 244-533 133-374 (526)
12 PRK09687 putative lyase; Provi 97.5 0.00053 1.1E-08 81.1 12.0 145 246-407 41-186 (280)
13 KOG1060 Vesicle coat complex A 97.4 0.093 2E-06 67.6 29.2 131 270-410 43-173 (968)
14 KOG1062 Vesicle coat complex A 97.4 0.24 5.2E-06 64.4 32.8 353 260-714 105-469 (866)
15 PRK09687 putative lyase; Provi 97.4 0.0015 3.2E-08 77.4 12.8 129 262-407 90-219 (280)
16 PRK13800 putative oxidoreducta 97.1 0.05 1.1E-06 74.3 25.6 262 63-405 628-895 (897)
17 KOG0414 Chromosome condensatio 97.1 2.4 5.2E-05 57.7 59.3 437 245-732 295-797 (1251)
18 KOG2171 Karyopherin (importin) 97.0 3 6.4E-05 56.8 68.3 311 62-411 86-420 (1075)
19 smart00333 TUDOR Tudor domain. 97.0 0.0014 3.1E-08 58.6 5.9 44 1379-1424 4-48 (57)
20 PF12717 Cnd1: non-SMC mitotic 96.9 0.031 6.6E-07 61.9 16.7 94 316-411 1-94 (178)
21 KOG2025 Chromosome condensatio 96.8 3.1 6.6E-05 54.1 35.4 160 217-406 59-219 (892)
22 KOG0212 Uncharacterized conser 96.8 2.6 5.5E-05 53.5 32.7 430 207-671 26-509 (675)
23 cd04508 TUDOR Tudor domains ar 96.8 0.0028 6.1E-08 54.7 5.7 43 1381-1424 1-44 (48)
24 KOG1824 TATA-binding protein-i 96.7 1.6 3.5E-05 57.9 31.6 474 204-700 454-980 (1233)
25 smart00743 Agenet Tudor-like d 96.7 0.0026 5.7E-08 57.9 5.4 36 1379-1415 4-39 (61)
26 KOG1060 Vesicle coat complex A 96.7 2.4 5.2E-05 55.5 32.7 161 245-414 91-251 (968)
27 PF13646 HEAT_2: HEAT repeats; 96.6 0.013 2.7E-07 56.4 9.5 83 308-405 4-88 (88)
28 KOG1949 Uncharacterized conser 96.5 0.38 8.3E-06 61.5 23.5 100 266-369 224-329 (1005)
29 PRK13800 putative oxidoreducta 96.5 0.015 3.2E-07 79.3 12.4 120 263-407 622-741 (897)
30 PF10508 Proteasom_PSMB: Prote 96.3 0.37 8.1E-06 61.9 23.2 241 165-410 91-367 (503)
31 PF10508 Proteasom_PSMB: Prote 96.3 2.1 4.5E-05 55.2 29.6 131 263-394 120-257 (503)
32 PLN03200 cellulose synthase-in 96.2 5.6 0.00012 58.2 35.2 373 315-752 416-812 (2102)
33 KOG2023 Nuclear transport rece 96.2 0.52 1.1E-05 60.2 22.4 368 245-651 378-789 (885)
34 KOG1248 Uncharacterized conser 96.1 10 0.00023 52.0 52.1 166 121-290 282-455 (1176)
35 KOG1242 Protein containing ada 96.0 3.3 7.3E-05 53.2 28.3 231 302-582 215-449 (569)
36 PF12348 CLASP_N: CLASP N term 95.9 0.077 1.7E-06 60.4 12.6 146 264-412 55-209 (228)
37 PF14500 MMS19_N: Dos2-interac 95.8 0.73 1.6E-05 54.4 20.4 231 63-308 6-255 (262)
38 COG5218 YCG1 Chromosome conden 95.7 5.4 0.00012 50.8 27.8 254 270-556 99-369 (885)
39 KOG4675 Uncharacterized conser 95.6 0.012 2.6E-07 67.9 4.3 65 1371-1435 152-224 (273)
40 KOG1949 Uncharacterized conser 95.3 5.1 0.00011 52.0 25.9 188 265-462 177-377 (1005)
41 PF13646 HEAT_2: HEAT repeats; 95.2 0.057 1.2E-06 51.8 7.3 86 264-367 1-88 (88)
42 KOG2011 Sister chromatid cohes 94.8 0.39 8.5E-06 64.8 15.5 125 307-442 291-421 (1048)
43 KOG1061 Vesicle coat complex A 94.8 5 0.00011 52.8 24.6 376 262-675 13-416 (734)
44 PF12460 MMS19_C: RNAPII trans 94.7 7.7 0.00017 48.8 25.9 299 69-379 56-402 (415)
45 KOG0213 Splicing factor 3b, su 94.6 6.1 0.00013 51.5 23.8 219 63-330 560-826 (1172)
46 PF09038 53-BP1_Tudor: Tumour 94.5 0.061 1.3E-06 55.4 5.5 46 1376-1422 1-46 (122)
47 KOG2023 Nuclear transport rece 94.5 0.48 1.1E-05 60.5 14.2 182 167-382 106-293 (885)
48 PF12348 CLASP_N: CLASP N term 94.5 0.92 2E-05 51.7 15.8 101 266-371 98-206 (228)
49 PF12719 Cnd3: Nuclear condens 94.3 0.43 9.3E-06 57.2 13.2 97 271-371 36-143 (298)
50 COG5096 Vesicle coat complex, 94.2 13 0.00029 49.6 26.9 129 271-410 28-157 (757)
51 KOG0915 Uncharacterized conser 94.2 26 0.00057 49.5 29.8 311 75-411 789-1162(1702)
52 cd00020 ARM Armadillo/beta-cat 93.8 0.085 1.8E-06 52.8 5.1 106 263-368 8-117 (120)
53 COG5240 SEC21 Vesicle coat com 93.7 6.2 0.00013 50.2 21.1 298 79-406 44-366 (898)
54 PF12717 Cnd1: non-SMC mitotic 93.7 0.63 1.4E-05 51.6 11.9 86 247-335 10-96 (178)
55 KOG0414 Chromosome condensatio 93.6 1.2 2.7E-05 60.3 16.0 151 244-400 896-1055(1251)
56 PF12755 Vac14_Fab1_bd: Vacuol 93.2 0.22 4.9E-06 50.1 6.8 66 341-407 26-94 (97)
57 COG5096 Vesicle coat complex, 93.1 9.5 0.00021 51.0 22.9 103 304-410 93-196 (757)
58 COG5098 Chromosome condensatio 93.0 12 0.00027 48.6 22.3 106 306-411 302-417 (1128)
59 COG5098 Chromosome condensatio 92.5 2.4 5.1E-05 54.6 15.4 110 251-361 335-464 (1128)
60 PLN03200 cellulose synthase-in 91.4 1.1E+02 0.0024 45.9 34.8 141 265-409 407-559 (2102)
61 PF02985 HEAT: HEAT repeat; I 91.3 0.29 6.2E-06 38.8 3.9 29 343-371 1-29 (31)
62 KOG1078 Vesicle coat complex C 91.3 6.4 0.00014 51.8 17.6 259 62-365 251-526 (865)
63 KOG1062 Vesicle coat complex A 91.2 8.8 0.00019 50.8 18.7 165 167-371 220-414 (866)
64 PF12719 Cnd3: Nuclear condens 91.2 12 0.00027 44.9 19.4 106 303-410 26-144 (298)
65 PF13513 HEAT_EZ: HEAT-like re 90.3 0.16 3.5E-06 45.0 1.9 52 317-368 1-54 (55)
66 PF01347 Vitellogenin_N: Lipop 90.3 3.4 7.4E-05 54.3 14.8 128 256-404 480-617 (618)
67 cd00020 ARM Armadillo/beta-cat 89.9 0.54 1.2E-05 46.9 5.5 100 308-407 12-118 (120)
68 PF06003 SMN: Survival motor n 89.8 0.57 1.2E-05 55.4 6.3 50 1376-1425 67-117 (264)
69 KOG0915 Uncharacterized conser 89.6 31 0.00066 48.9 22.4 352 29-393 995-1457(1702)
70 PF10363 DUF2435: Protein of u 89.5 2.6 5.6E-05 42.2 9.7 87 302-392 2-89 (92)
71 PF13001 Ecm29: Proteasome sta 89.5 14 0.0003 47.8 18.9 129 253-384 361-499 (501)
72 PF05804 KAP: Kinesin-associat 89.3 14 0.0003 49.6 18.9 177 644-831 289-478 (708)
73 KOG2259 Uncharacterized conser 89.1 0.69 1.5E-05 59.2 6.6 97 306-406 376-472 (823)
74 KOG2956 CLIP-associating prote 88.8 3.7 7.9E-05 51.4 12.2 173 251-435 321-498 (516)
75 KOG1242 Protein containing ada 88.8 10 0.00022 49.0 16.5 217 186-411 172-403 (569)
76 PF12755 Vac14_Fab1_bd: Vacuol 88.1 1.1 2.4E-05 45.2 6.1 84 279-362 3-88 (97)
77 KOG2259 Uncharacterized conser 87.9 3.1 6.8E-05 53.6 11.0 112 296-410 191-311 (823)
78 PF13513 HEAT_EZ: HEAT-like re 87.8 0.48 1E-05 42.0 3.0 52 356-407 1-55 (55)
79 KOG1059 Vesicle coat complex A 87.7 1.1E+02 0.0025 40.7 34.3 113 255-375 102-214 (877)
80 COG5240 SEC21 Vesicle coat com 87.5 1E+02 0.0022 40.0 30.3 51 624-674 319-369 (898)
81 KOG2011 Sister chromatid cohes 87.2 8.9 0.00019 52.6 15.3 164 204-412 264-439 (1048)
82 TIGR02270 conserved hypothetic 86.9 4.1 9E-05 51.2 11.5 78 313-406 127-204 (410)
83 PF12765 Cohesin_HEAT: HEAT re 86.8 0.82 1.8E-05 39.1 3.7 39 327-365 3-41 (42)
84 smart00638 LPD_N Lipoprotein N 85.2 1.1E+02 0.0024 40.2 23.8 143 204-363 420-570 (574)
85 KOG0166 Karyopherin (importin) 84.8 1.4E+02 0.003 38.9 24.6 170 266-442 70-252 (514)
86 TIGR02270 conserved hypothetic 83.9 11 0.00024 47.6 13.1 135 244-409 42-176 (410)
87 smart00638 LPD_N Lipoprotein N 83.2 36 0.00079 44.6 18.2 144 254-407 389-543 (574)
88 KOG1058 Vesicle coat complex C 83.2 35 0.00076 45.2 17.0 255 64-368 142-422 (948)
89 PF12231 Rif1_N: Rap1-interact 82.2 1.4E+02 0.0031 37.2 27.6 320 66-411 3-354 (372)
90 COG1413 FOG: HEAT repeat [Ener 82.1 9.5 0.00021 46.1 11.5 135 249-409 95-242 (335)
91 PF12074 DUF3554: Domain of un 81.6 66 0.0014 39.4 18.5 204 147-355 19-257 (339)
92 KOG1820 Microtubule-associated 81.1 14 0.00029 50.2 13.1 150 258-411 249-402 (815)
93 COG5181 HSH155 U2 snRNP splice 80.8 1E+02 0.0022 40.4 19.3 303 53-367 599-943 (975)
94 KOG1967 DNA repair/transcripti 79.0 9.4 0.0002 51.2 10.3 149 261-409 866-1024(1030)
95 KOG1992 Nuclear export recepto 77.7 60 0.0013 43.7 16.7 116 113-233 603-733 (960)
96 PF11864 DUF3384: Domain of un 76.9 2.2E+02 0.0049 36.6 21.8 166 116-291 147-330 (464)
97 KOG0413 Uncharacterized conser 76.9 32 0.0007 46.5 13.9 134 272-410 941-1074(1529)
98 KOG0392 SNF2 family DNA-depend 76.6 12 0.00026 51.6 10.4 137 241-382 792-944 (1549)
99 COG1413 FOG: HEAT repeat [Ener 75.9 18 0.00039 43.8 11.3 47 357-410 164-210 (335)
100 PF14911 MMS22L_C: S-phase gen 75.5 1.6E+02 0.0034 37.0 18.9 183 96-287 139-370 (373)
101 KOG0368 Acetyl-CoA carboxylase 75.1 1.4E+02 0.003 42.8 19.3 215 107-339 768-1017(2196)
102 PF14676 FANCI_S2: FANCI solen 74.9 3.5 7.7E-05 45.2 4.4 120 246-368 39-158 (158)
103 KOG1820 Microtubule-associated 74.5 31 0.00067 47.0 13.6 144 264-411 297-445 (815)
104 KOG1240 Protein kinase contain 74.2 26 0.00057 48.5 12.5 156 242-398 440-635 (1431)
105 KOG1243 Protein kinase [Genera 73.1 11 0.00024 49.4 8.7 108 301-408 327-436 (690)
106 KOG0212 Uncharacterized conser 73.1 3E+02 0.0066 36.1 36.2 283 118-411 12-326 (675)
107 KOG2213 Apoptosis inhibitor 5/ 72.7 1.8E+02 0.0038 36.5 17.8 259 300-594 22-303 (460)
108 KOG1058 Vesicle coat complex C 72.6 3.6E+02 0.0077 36.6 31.9 144 256-411 14-165 (948)
109 COG5537 IRR1 Cohesin [Cell div 71.2 5.9 0.00013 50.8 5.5 104 302-409 273-386 (740)
110 PF04826 Arm_2: Armadillo-like 71.0 1.3E+02 0.0029 35.6 16.4 145 217-363 88-254 (254)
111 PF12765 Cohesin_HEAT: HEAT re 70.6 5.2 0.00011 34.3 3.5 39 366-404 3-42 (42)
112 KOG1059 Vesicle coat complex A 70.6 51 0.0011 43.7 13.4 165 244-409 163-365 (877)
113 COG5181 HSH155 U2 snRNP splice 70.4 2.1E+02 0.0046 37.6 18.3 258 147-410 396-718 (975)
114 KOG0166 Karyopherin (importin) 69.5 12 0.00027 47.9 7.9 141 262-406 152-305 (514)
115 KOG2038 CAATT-binding transcri 68.8 4.2E+02 0.0092 36.0 21.8 57 313-371 314-370 (988)
116 PF01347 Vitellogenin_N: Lipop 68.6 59 0.0013 43.0 14.3 219 151-406 348-586 (618)
117 PF02985 HEAT: HEAT repeat; I 68.4 9.1 0.0002 30.3 4.2 29 382-410 2-30 (31)
118 KOG2051 Nonsense-mediated mRNA 68.2 34 0.00075 46.8 11.7 91 245-336 481-578 (1128)
119 KOG2025 Chromosome condensatio 68.2 4.3E+02 0.0092 35.7 32.5 214 141-408 75-293 (892)
120 PF05004 IFRD: Interferon-rela 67.8 1.4E+02 0.0031 36.3 16.2 67 648-714 46-114 (309)
121 KOG1967 DNA repair/transcripti 67.3 2.7E+02 0.0059 38.4 19.1 128 238-366 880-1019(1030)
122 PF05641 Agenet: Agenet domain 65.1 11 0.00023 35.5 4.7 35 1380-1415 3-40 (68)
123 KOG1240 Protein kinase contain 65.1 4.7E+02 0.01 37.3 20.9 136 271-411 586-727 (1431)
124 PF10363 DUF2435: Protein of u 64.9 23 0.00049 35.6 7.2 84 268-357 9-92 (92)
125 PF05004 IFRD: Interferon-rela 64.1 1.4E+02 0.003 36.5 15.1 150 263-412 87-260 (309)
126 PF05804 KAP: Kinesin-associat 63.2 5.4E+02 0.012 35.2 21.5 165 545-715 464-649 (708)
127 PF05327 RRN3: RNA polymerase 62.4 62 0.0013 42.6 12.6 188 102-323 31-221 (563)
128 PF03378 CAS_CSE1: CAS/CSE pro 62.3 85 0.0018 40.1 13.3 178 74-266 44-242 (435)
129 PF08167 RIX1: rRNA processing 61.3 59 0.0013 35.9 10.4 138 602-771 19-163 (165)
130 PF00567 TUDOR: Tudor domain; 60.3 18 0.00039 36.2 5.8 49 1375-1424 49-98 (121)
131 PF13251 DUF4042: Domain of un 60.0 91 0.002 35.3 11.6 130 278-410 2-175 (182)
132 KOG1517 Guanine nucleotide bin 59.9 2.5E+02 0.0055 39.1 16.9 121 275-412 613-735 (1387)
133 KOG1241 Karyopherin (importin) 59.9 6E+02 0.013 34.6 29.0 157 254-411 355-532 (859)
134 PF15057 DUF4537: Domain of un 58.5 19 0.00042 38.0 5.7 42 1381-1423 1-42 (124)
135 COG5218 YCG1 Chromosome conden 56.8 6E+02 0.013 33.7 25.9 195 122-369 66-264 (885)
136 PF05918 API5: Apoptosis inhib 56.0 6.2E+02 0.014 33.6 27.2 121 604-730 20-140 (556)
137 KOG0211 Protein phosphatase 2A 55.8 36 0.00079 46.0 8.8 135 274-411 210-347 (759)
138 KOG1943 Beta-tubulin folding c 54.0 8.5E+02 0.018 34.5 43.2 152 256-413 537-709 (1133)
139 PF12530 DUF3730: Protein of u 53.2 3.7E+02 0.008 31.4 15.6 128 626-756 56-190 (234)
140 PF11717 Tudor-knot: RNA bindi 52.9 32 0.00069 31.1 5.4 43 1380-1423 3-50 (55)
141 KOG0644 Uncharacterized conser 52.8 15 0.00032 48.8 4.3 48 1376-1423 977-1036(1113)
142 KOG2393 Transcription initiati 52.0 32 0.00069 44.0 7.0 24 1572-1596 292-315 (555)
143 PF05918 API5: Apoptosis inhib 51.6 1.5E+02 0.0032 39.1 13.0 83 274-363 34-116 (556)
144 KOG1991 Nuclear transport rece 51.0 9E+02 0.02 34.0 44.6 300 164-480 102-497 (1010)
145 PF12830 Nipped-B_C: Sister ch 50.8 60 0.0013 36.5 8.4 70 341-411 7-76 (187)
146 COG5215 KAP95 Karyopherin (imp 48.9 7.8E+02 0.017 32.6 20.2 333 6-369 384-761 (858)
147 KOG2933 Uncharacterized conser 48.8 98 0.0021 37.6 9.9 162 244-410 107-278 (334)
148 PF14500 MMS19_N: Dos2-interac 47.0 5.8E+02 0.013 30.5 23.1 63 345-409 2-69 (262)
149 KOG1991 Nuclear transport rece 46.9 1E+03 0.022 33.5 26.6 111 248-361 445-566 (1010)
150 PF04118 Dopey_N: Dopey, N-ter 46.4 1.4E+02 0.003 36.5 11.0 107 251-368 131-251 (307)
151 COG5537 IRR1 Cohesin [Cell div 45.6 1.1E+02 0.0025 39.9 10.3 130 272-412 285-428 (740)
152 PF13251 DUF4042: Domain of un 44.8 1.3E+02 0.0029 34.0 9.8 98 271-371 49-174 (182)
153 cd00256 VATPase_H VATPase_H, r 44.8 8E+02 0.017 31.6 20.5 64 67-134 65-132 (429)
154 KOG0168 Putative ubiquitin fus 44.2 5.7E+02 0.012 35.2 16.3 117 28-156 313-439 (1051)
155 KOG1832 HIV-1 Vpr-binding prot 43.4 14 0.0003 49.2 2.1 22 843-864 753-774 (1516)
156 PF12530 DUF3730: Protein of u 42.5 6.2E+02 0.013 29.6 16.4 70 249-325 108-178 (234)
157 KOG2062 26S proteasome regulat 41.5 1.1E+02 0.0024 40.9 9.5 88 278-377 502-590 (929)
158 COG5064 SRP1 Karyopherin (impo 41.0 1.9E+02 0.0042 35.5 10.6 137 264-407 73-251 (526)
159 COG5219 Uncharacterized conser 40.6 4.7E+02 0.01 36.2 14.7 194 98-328 1036-1263(1525)
160 KOG2160 Armadillo/beta-catenin 40.0 3.1E+02 0.0067 34.1 12.5 96 270-370 132-239 (342)
161 KOG0567 HEAT repeat-containing 39.5 6.8E+02 0.015 30.3 14.6 147 245-412 53-252 (289)
162 KOG1832 HIV-1 Vpr-binding prot 39.3 17 0.00038 48.4 2.1 22 1182-1203 1123-1144(1516)
163 KOG1077 Vesicle coat complex A 39.0 1.2E+02 0.0025 40.5 9.1 120 246-370 307-432 (938)
164 KOG2956 CLIP-associating prote 39.0 6E+02 0.013 32.9 14.8 162 165-331 302-476 (516)
165 PF04826 Arm_2: Armadillo-like 38.4 1.3E+02 0.0027 35.9 8.8 135 273-407 24-161 (254)
166 KOG2032 Uncharacterized conser 37.5 6.6E+02 0.014 32.7 14.9 251 270-532 188-455 (533)
167 PF12074 DUF3554: Domain of un 36.5 1.6E+02 0.0035 36.1 9.8 87 319-409 3-90 (339)
168 KOG4224 Armadillo repeat prote 36.2 4.8E+02 0.011 32.6 13.0 146 261-409 207-363 (550)
169 KOG0943 Predicted ubiquitin-pr 36.1 74 0.0016 43.9 6.8 16 959-974 1213-1228(3015)
170 KOG1243 Protein kinase [Genera 35.9 3E+02 0.0066 36.9 12.2 148 256-405 324-472 (690)
171 KOG4413 26S proteasome regulat 35.7 2.4E+02 0.0052 34.6 10.3 123 281-410 62-201 (524)
172 KOG2153 Protein involved in th 34.3 1.1E+02 0.0024 40.3 7.9 53 320-372 302-354 (704)
173 KOG3026 Splicing factor SPF30 34.2 40 0.00086 39.1 3.6 38 1377-1414 90-127 (262)
174 COG5116 RPN2 26S proteasome re 34.2 70 0.0015 41.3 6.0 63 312-377 525-587 (926)
175 PF13764 E3_UbLigase_R4: E3 ub 33.6 9.9E+02 0.021 33.2 16.9 164 12-198 44-235 (802)
176 PF14228 MOR2-PAG1_mid: Cell m 33.6 1.7E+03 0.037 32.2 28.5 125 278-410 486-611 (1120)
177 PF14664 RICTOR_N: Rapamycin-i 33.5 1.3E+02 0.0028 37.8 8.3 112 263-376 26-142 (371)
178 KOG0211 Protein phosphatase 2A 33.3 1.5E+03 0.032 31.4 26.5 140 261-402 275-420 (759)
179 KOG2050 Puf family RNA-binding 33.2 7E+02 0.015 33.1 14.3 123 399-550 246-376 (652)
180 KOG0168 Putative ubiquitin fus 32.8 8.1E+02 0.017 33.9 15.1 183 593-778 243-440 (1051)
181 PF08569 Mo25: Mo25-like; Int 31.5 1.1E+03 0.023 29.5 15.5 168 229-410 49-239 (335)
182 PF08506 Cse1: Cse1; InterPro 31.4 9E+02 0.02 30.4 15.1 223 509-747 102-369 (370)
183 cd03568 VHS_STAM VHS domain fa 30.6 1.4E+02 0.003 32.5 7.0 71 603-677 36-113 (144)
184 KOG2160 Armadillo/beta-catenin 30.4 3.8E+02 0.0081 33.4 11.1 145 264-411 85-242 (342)
185 PF11707 Npa1: Ribosome 60S bi 30.0 2.1E+02 0.0046 35.1 9.3 128 258-409 52-214 (330)
186 PF08324 PUL: PUL domain; Int 28.5 2.4E+02 0.0051 33.2 9.1 97 274-370 122-230 (268)
187 cd03561 VHS VHS domain family; 28.1 4.6E+02 0.01 27.8 10.3 81 329-411 26-114 (133)
188 PF00514 Arm: Armadillo/beta-c 28.0 92 0.002 26.0 4.0 29 342-370 12-40 (41)
189 PF11919 DUF3437: Domain of un 28.0 1.3E+02 0.0028 30.3 5.7 57 355-412 2-61 (90)
190 PLN03076 ARF guanine nucleotid 27.3 2.5E+03 0.055 32.2 31.7 157 48-218 1083-1257(1780)
191 KOG0413 Uncharacterized conser 27.1 2E+03 0.043 30.9 37.5 101 264-368 436-536 (1529)
192 PF12830 Nipped-B_C: Sister ch 26.9 4.7E+02 0.01 29.5 10.7 66 303-373 8-76 (187)
193 PF02237 BPL_C: Biotin protein 26.9 1.5E+02 0.0033 26.0 5.3 39 1380-1421 2-40 (48)
194 KOG1293 Proteins containing ar 26.0 3.2E+02 0.0068 36.5 9.9 173 266-449 335-524 (678)
195 PLN00104 MYST -like histone ac 25.9 2.9E+02 0.0063 35.5 9.4 38 1378-1415 54-97 (450)
196 PF14664 RICTOR_N: Rapamycin-i 25.0 1.1E+03 0.025 29.6 14.4 199 204-410 44-270 (371)
197 PF14911 MMS22L_C: S-phase gen 25.0 6.6E+02 0.014 31.7 12.1 123 18-160 223-347 (373)
198 KOG0162 Myosin class I heavy c 24.9 6.8E+02 0.015 33.9 12.3 152 163-319 455-643 (1106)
199 KOG3723 PH domain protein Melt 24.3 1.8E+03 0.039 29.4 19.7 49 245-294 182-230 (851)
200 KOG3064 RNA-binding nuclear pr 24.2 27 0.00057 40.8 0.1 18 1610-1627 244-261 (303)
201 PF08767 CRM1_C: CRM1 C termin 24.2 4.2E+02 0.0092 32.5 10.3 161 148-312 9-211 (319)
202 PF08569 Mo25: Mo25-like; Int 23.9 1.5E+03 0.032 28.3 19.5 88 266-354 213-313 (335)
203 KOG0946 ER-Golgi vesicle-tethe 23.5 3.6E+02 0.0077 36.8 9.7 90 244-373 108-197 (970)
204 PF08605 Rad9_Rad53_bind: Fung 23.5 1.4E+02 0.003 32.2 5.2 49 1391-1442 21-69 (131)
205 PF06685 DUF1186: Protein of u 23.1 9.4E+02 0.02 28.7 12.4 100 244-355 100-202 (249)
206 cd03568 VHS_STAM VHS domain fa 23.1 6E+02 0.013 27.7 10.1 74 338-411 33-112 (144)
207 KOG3687 Tuberin - Rap/ran-GTPa 23.0 2.3E+03 0.051 30.3 18.4 342 80-435 346-782 (1697)
208 cd06561 AlkD_like A new struct 22.4 3.3E+02 0.0071 30.2 8.4 76 317-400 120-195 (197)
209 cd00280 TRFH Telomeric Repeat 22.1 8.6E+02 0.019 28.0 11.1 103 47-157 30-139 (200)
210 KOG2759 Vacuolar H+-ATPase V1 21.0 1.8E+03 0.04 28.3 20.5 105 63-181 72-187 (442)
211 PF00790 VHS: VHS domain; Int 20.5 5.9E+02 0.013 27.3 9.4 81 329-412 31-120 (140)
212 PF12612 TFCD_C: Tubulin foldi 20.4 3.5E+02 0.0077 30.5 8.1 111 70-198 21-137 (193)
213 PF12460 MMS19_C: RNAPII trans 20.3 1.8E+03 0.039 27.9 23.5 75 317-391 204-282 (415)
214 smart00288 VHS Domain present 20.1 6.8E+02 0.015 26.7 9.7 75 338-412 33-114 (133)
No 1
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=8.2e-137 Score=1329.84 Aligned_cols=1067 Identities=30% Similarity=0.464 Sum_probs=903.4
Q ss_pred HHHccccCCCCCCHHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhcchhhhcCCCcchHHHHHHHHHHHHhhcCC
Q 000315 10 KEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAP 89 (1678)
Q Consensus 10 ~~~g~kL~~~~~s~~eLlkrL~~L~~~Ls~~dQ~~~~~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~AP 89 (1678)
..-|-+....|++++||++||++|++||++++|++ .+.+++.|++.+|+++.||+|+|+|||+|||||++||||||||
T Consensus 6 ~~~g~~~~~~~~s~~ell~rLk~l~~~l~~~~qd~--~~~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aP 83 (1266)
T KOG1525|consen 6 YPPGCLTSLNPISKDELLKRLKKLANCLASLDQDN--LDLASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAP 83 (1266)
T ss_pred cCCCCccccCcccHHHHHHHHHHHHHHHhhcccCc--hhHHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCC
Confidence 34466666778999999999999999999999996 6899999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHHhhcCCChhhHHH
Q 000315 90 EAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLS 169 (1678)
Q Consensus 90 daPytd~qLkdIF~l~v~qf~~L~d~~~p~f~~~~~lLe~lA~vks~vl~~DL~~~~Li~~lF~~ff~~v~~~~~~~V~~ 169 (1678)
||||++.||+|||++|++||.||.|+.+|||.||+||||+||.||.|++|.|.+|++++.+||++||++++.+||.+|.+
T Consensus 84 eaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~ 163 (1266)
T KOG1525|consen 84 EAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFN 163 (1266)
T ss_pred CCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHHHHH
Confidence 99999999999999999999999999999999999999999999955555555599999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCCC-CCCCCcchH
Q 000315 170 SMQTIMIVLLEESEDIQEDLLVILLSALGRNKN---DTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDS-RPGHSHIDY 245 (1678)
Q Consensus 170 ~m~~IL~~vI~Ese~vp~~lLd~IL~~l~~~k~---~~a~~LA~~vi~~~~dkL~~~I~q~f~~il~~d~-~~~~~~~~~ 245 (1678)
|.+||+.+|.|.+.||.++|++||.+|..++. ..|+.||..+|+.|++.+++.|++||++.+.++. ..+....++
T Consensus 164 -~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~ 242 (1266)
T KOG1525|consen 164 -MLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKY 242 (1266)
T ss_pred -HHHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHH
Confidence 99999999999999999999999999976543 3999999999999999999999999999888764 455667789
Q ss_pred HHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHH
Q 000315 246 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 325 (1678)
Q Consensus 246 h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve 325 (1678)
|++|++||+++|++|++|||||++||+++++.+|+.||.++|+||+.+++.++.+|+++|.+||+||+|++++||++||+
T Consensus 243 he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~ 322 (1266)
T KOG1525|consen 243 HELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVE 322 (1266)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHH
Q 000315 326 HVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLA 405 (1678)
Q Consensus 326 ~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La 405 (1678)
++++||.+||+...+..+..+++.|+.|++++||..+|.++|+++.+.+..+|. +|+.|+||+||||+.||++||++|+
T Consensus 323 ~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~La 401 (1266)
T KOG1525|consen 323 SIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLA 401 (1266)
T ss_pred HhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 999999999998888899999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHH-HhhhccCCCcchhccccchHHHhhhhccCCCCc-hhHHHHhhccCcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 000315 406 DIFRG-CCLRNFNGSINQNEFEWIPGKILRCLYDKDFGS-DTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKAL 483 (1678)
Q Consensus 406 ~LY~~-~~~~~~~~~~~~~~~~wIPs~IL~~~Y~nd~~~-~lVE~vL~e~LlP~~~~~~~R~~~ll~l~~~LD~~~~kal 483 (1678)
++|+. ||..++++...+..|.|||++||++||.++.+. .+||++|+++|+|+++++++|+++|+++|++||..+.++|
T Consensus 402 qlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~~D~~a~kaf 481 (1266)
T KOG1525|consen 402 QLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHLYQLLAGLDLNAHKAF 481 (1266)
T ss_pred HHHHHHHHhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcccHhhhhHH
Confidence 99996 666667778888999999999999999998764 4999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHhh--ccHHHHHHHHHHhcC
Q 000315 484 EKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQL--KDANVWKILMNLLDS 561 (1678)
Q Consensus 484 ~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kl~~~i~~Ls~~fPDp~Ka~~~L~kf~kl--nD~Ri~kLLk~~idp 561 (1678)
..|+++|+++|.+|+.||.++...+.++ ..+++...|..++..||||..+....++|++. .+..+...+..+..+
T Consensus 482 ~~i~~~q~~ls~~vr~~I~~~k~~~~d~---~~k~i~~~i~~i~~~lpD~~s~~~~~~~f~~~L~~~~~~~s~~~~L~~~ 558 (1266)
T KOG1525|consen 482 NEILKRQSRLSEEVRDYITLSKTPNTDD---SMKKIFSKIVKISENLPDPSSRSYDSMKFADVLETLAKVRSCLVSLDSP 558 (1266)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCccH---hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999988765443 77888889999999999999999999999663 467888999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcC----CCchHHHHHHHHHhhhccccCh-hHHHHHHHHHHhhcc-------cch--hhhHHH
Q 000315 562 NTSFDQAFTGRDDLLKILGA----KHRLYDFLSTLSMKCSYLLFNK-EHVKEILLEVAAQKS-------SAN--AQFMQS 627 (1678)
Q Consensus 562 ~td~~tv~~a~kELlkkL~~----k~~~~e~l~~Ll~R~S~lifNk-s~V~~LL~~v~~~~~-------~~~--~~~~~~ 627 (1678)
..+|.++.-.+++++.+++. +..+..+.+.|+.|..++.+.. +.+..++........ .++ ......
T Consensus 559 ~~~C~~l~~~v~~~l~e~~~~~~s~nlF~~~~~~li~~I~~v~~di~~s~~~~ik~~~~~i~~~~~~l~e~v~~~~a~kl 638 (1266)
T KOG1525|consen 559 SISCKELLITVKEILFELGRKKQSKNLFSSMEKELIERIAEVSLDILESISALIKLNNIVIAEVSLLLLEGVLSEKALKL 638 (1266)
T ss_pred chhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHhcchhhhhHHHHHHHHhhhhhhHHHHHhhcccccchhhHHhH
Confidence 88888776556666666554 4457788899999999988887 777777765432111 111 122345
Q ss_pred HHHHHHHHHhhCCcCcccc--HHHHHHHHhhccccchhhHHHHHHHhhcchHhhhhcccchHHHHHHHHhhcCChHHHHH
Q 000315 628 CMDILGILARFSPLLLGGT--EEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKY 705 (1678)
Q Consensus 628 a~eLL~~IS~~~P~lFk~~--v~~Li~lL~~~~~~~~e~aLkiLak~~k~i~e~~~~~~s~l~~~L~~lal~GtpkqAKy 705 (1678)
...||.++|..+|.+|... +..++..+.+..+...+.+|+.+...|..+....+...+.+...+.++++.|+|.+||+
T Consensus 639 ~~~lle~ls~~~~~~~~~s~~v~~i~~~~~~~~~~~~~~vLk~~~~~~~~~~~~~~si~~~~~~~~~~~~~~g~~~q~k~ 718 (1266)
T KOG1525|consen 639 KKYLLEALSSIHPDLFKYSESVLSILEKLFSEPDVVAPVVLKKLESQGKKIEVEAPSILSTLSRVLAKKELSGTPEQAKL 718 (1266)
T ss_pred HHHHHHHhhhcCcchhhhhHHHHHHHHHhccchhhhhHHHHHHHHhccccccccchhhhcchhhhhhHHHHcCCcchhHH
Confidence 6789999999999998876 46666666666666778899999888855554555566788999999999999999999
Q ss_pred HHHHHHhhcCCCccchHHHHHHHHHHhhhhc-----CCCchHHHHHHHHHhhcccccccc-hHHHHHHHHHhhhcccccc
Q 000315 706 AVHALAAITKDDGLKSLSVLYKRLVDMLEEK-----THLPAVLQSLGCIAQTAMPVFETR-ESEIEEFIKSKILRCSNKI 779 (1678)
Q Consensus 706 AVr~Laa~~~~~~~~~~~~L~~~L~~~L~~~-----~~l~t~L~sLg~Iaq~aP~vfe~~-~~eI~~fIik~ILl~~~~~ 779 (1678)
|++|+.++...+.. .+.+++..+.+.+... .++.+.+.+||+|+.+.|..|.+. ...+..||+|+++..++.+
T Consensus 719 ~~~~i~~~~~s~~~-~l~q~~~~~~d~l~~~~~~~~e~~~~~i~~lgei~~~~p~~~~~~~k~~~~~~IvK~~~~~~~~~ 797 (1266)
T KOG1525|consen 719 AKRCIKAILQSKFC-KLKQTFEEIKDNLLEDLTSELEGLRTPIVTLGEIFLDLPSQFLDPLKSDVAKFIVKKVLSNDDSP 797 (1266)
T ss_pred HhhhhhHHhhhhhh-HHHHHhhhhHHHHhhhhhhhhhccccchhhhhhHhhhccHhhcchhhhhhHHHHHHHHhcCCCcc
Confidence 99999988876532 3445667777776443 599999999999999999666554 7889999999998888887
Q ss_pred CCC-CCCCCCC---c-hhhHHHHHHHHHHHHHhhcCCCccc--cccchHHHHHHHHHhh-ccCccccCCCCChhhHhHhH
Q 000315 780 RND-TKACWDD---R-SELCLLKIYGIKTLVKSYLPVKDAH--IRPGIDDLLGILKSML-SYGEMSEDIESSSVDKAHLR 851 (1678)
Q Consensus 780 ~~~-~~~~W~d---~-se~~~aKi~aLK~Lvn~ll~~~~~~--~~~~i~~ll~lL~~il-~~GEl~~~~~tp~~~ksrLR 851 (1678)
++. ....|+. . +..+.+|++|++++++||++...+. .+-.+...+.+|..++ +.|++..+..+|..++++||
T Consensus 798 ~e~~~~~~~~P~~~~~~p~~~~k~~a~~L~~~~l~~~~~d~~~~e~s~~~~~~~L~~ll~~~gdl~~~~~~~~~~~sklr 877 (1266)
T KOG1525|consen 798 GEKNKSKEWLPSDKLLSPNTSLKVLAIKLLVRRLLDLEEDKEKDELSTPRSFRLLSKLLNSEGDLTEQNRDPKSDQSKLR 877 (1266)
T ss_pred ccccCccccCCcccccchhhhhHHHHHHHhhhhccccccCcchhhhcchhHHHHHHHHHhhcCCCCcccCCcchhhhhhh
Confidence 765 6677866 2 4568889999999999999987642 1111122566777765 69999999889999999999
Q ss_pred HHHHHHHHHhhhc--cCCCCCHHHHHHHhhcccCCchhHHHHHHHHHHHhHhcCCCchhhHHHHHhhhccCCCCchHHH-
Q 000315 852 LASAKAVLRLSRQ--WDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEE- 928 (1678)
Q Consensus 852 LaAa~~lLKLAr~--~d~~i~~d~f~l~~l~~qD~~~~VR~~Fl~KL~k~L~~~~L~~kY~~lf~la~~a~ep~~~~e~- 928 (1678)
+.|+.++||||.. +..++.++.|..+.+.++|++++||..|+.||++++....+|.-|++.|.+++.+... ...+
T Consensus 878 ~~a~~~ilKl~~~~~~~e~~~~~~~~~~~~~i~de~~~vR~~f~~kl~k~l~~i~lp~~~~a~~~l~~~d~~~--~~~~~ 955 (1266)
T KOG1525|consen 878 LTAKITILKLASEKSYHEFINAEQYEKLILLISDECLQVRLVFLLKLHKGLSRIKLPLEYMAKFKLCAPDVSK--ELLAN 955 (1266)
T ss_pred hhhhheeeecccccchhccCCHHHHHHHHHHhcCCchhHHHHHHHHccccccccccchhhhhHHHHhccchhh--hhhhH
Confidence 9999999999986 5788999999888888999999999999999999999999999999999886532111 0000
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccccccccCCchhhhHHHHhHccCCCCCCcchhhcHHHHHHHHHHHHHHHHHhhccCcc
Q 000315 929 KQNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDED 1008 (1678)
Q Consensus 929 K~~l~~~i~~~~~~r~r~~s~~s~~~~~~~~pEy~LprLIHlLAHH~~Pd~ee~~d~~a~~~~~~yL~F~L~~L~~~~~~ 1008 (1678)
+....+-...+++.+.....+.++.. ....|||+.+|.+|++||| |++....++..|-.+..++||.++.|...+
T Consensus 956 ~~~~~t~~~~~~r~~t~~e~~~s~~~-~~~~~e~V~~~~~~~la~d--~~~~~~edv~~l~~~ke~~~~vl~~l~~~~-- 1030 (1266)
T KOG1525|consen 956 KREEETKNSASRREQTKFERATSDGT-LAHLPEYVGSYVIHLLAHD--PDFVKAEDVDSLSDLKECLWFVLEDLDEEN-- 1030 (1266)
T ss_pred HHHhhhhcchhhhhhhhhhhccCchh-hhhhhHHhhhhhhhhhccC--ccccccchhhhHHHHHHhHHHHHhhhhhhh--
Confidence 11111112222233333333333321 5688999999999999999 999988899999999999999999996421
Q ss_pred ccccccccccH--HHHHHHHHHhhcccccccc---ccCcchHHHHHHHHHHHHHHhc-cCCCCcccccccCCCccccCCC
Q 000315 1009 VKSEASNKESI--SVIISIFRSIKCSEDIVDA---AKSKNSHAICDLGLSITKRLSR-MEDNSQGVFSSVSLPSTLYKPY 1082 (1678)
Q Consensus 1009 ~~~~~~~~eNi--SlLy~La~rIKq~rDa~d~---~~S~nlY~LcDLAq~IIk~~a~-k~W~lqtyPGkV~LPs~LF~p~ 1082 (1678)
+|+ .+.-.+.+-+++.+|...+ ..+..||+|||+|+.|+..... .+|...+|||+++||..+|.+.
T Consensus 1031 --------~n~~~~~~~~~~~~~~~~~d~~s~~d~~~~~kl~~l~d~a~~i~~sk~~~~s~~~tt~~~~~~lp~~~~~~~ 1102 (1266)
T KOG1525|consen 1031 --------ENNQHKFWKREKEEIKGSEDEESPDDVGDNIKLYTLCDLAQCIILSKSTKFSNSSTTSPGKLNLPALSFTSP 1102 (1266)
T ss_pred --------ccchhHHHHHHHhhhhcchhhcCCcccCCCceeeeHHhHHHHHHhcccccccCCCCCCCccccCchhhhCCc
Confidence 222 2334444556677787643 3456799999999999998775 6799999999999999999998
Q ss_pred CCCCcccccccccccccccchh
Q 000315 1083 EKKEGDDSLASERQTWLADESV 1104 (1678)
Q Consensus 1083 ~s~~~~~a~~~~~K~yLpde~~ 1104 (1678)
.+ .+ -...++|+|+++-
T Consensus 1103 ~~----kn-~~~~k~~i~e~~~ 1119 (1266)
T KOG1525|consen 1103 KD----KN-FINNKIYIPEETE 1119 (1266)
T ss_pred ch----hh-hccccccCCchhc
Confidence 64 22 2468999999943
No 2
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=5.3e-14 Score=186.39 Aligned_cols=490 Identities=18% Similarity=0.135 Sum_probs=249.6
Q ss_pred CcCccccHHHHHHHHhhccccchhhHHHHHHHhhcchHhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCcc
Q 000315 640 PLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGL 719 (1678)
Q Consensus 640 P~lFk~~v~~Li~lL~~~~~~~~e~aLkiLak~~k~i~e~~~~~~s~l~~~L~~lal~GtpkqAKyAVr~Laa~~~~~~~ 719 (1678)
+.+|..-+..|+..|.. ..+.++..++..++.............++..|-++..+..||.+.+|..+..+...
T Consensus 583 ~nlF~~~~~~li~~I~~-------v~~di~~s~~~~ik~~~~~i~~~~~~l~e~v~~~~a~kl~~~lle~ls~~~~~~~~ 655 (1266)
T KOG1525|consen 583 KNLFSSMEKELIERIAE-------VSLDILESISALIKLNNIVIAEVSLLLLEGVLSEKALKLKKYLLEALSSIHPDLFK 655 (1266)
T ss_pred cchHHHHHHHHHHHhcc-------hhhhhHHHHHHHHhhhhhhHHHHHhhcccccchhhHHhHHHHHHHHhhhcCcchhh
Confidence 45888888888888775 34555554444444333323333455566788888889999999999977765432
Q ss_pred chHHHHHHHHHHhhh--hcCCCchHHHHHHHHHhhcccccccchHHHHHHHHHhhhccccccCCCCCCCCCCchhhHHHH
Q 000315 720 KSLSVLYKRLVDMLE--EKTHLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLK 797 (1678)
Q Consensus 720 ~~~~~L~~~L~~~L~--~~~~l~t~L~sLg~Iaq~aP~vfe~~~~eI~~fIik~ILl~~~~~~~~~~~~W~d~se~~~aK 797 (1678)
.+..+..|+..+. .....|.+|+.+.+++ +.+-......+..++-.-.....+...+..+..|..-...++.+
T Consensus 656 --~s~~v~~i~~~~~~~~~~~~~~vLk~~~~~~---~~~~~~~~si~~~~~~~~~~~~~~g~~~q~k~~~~~i~~~~~s~ 730 (1266)
T KOG1525|consen 656 --YSESVLSILEKLFSEPDVVAPVVLKKLESQG---KKIEVEAPSILSTLSRVLAKKELSGTPEQAKLAKRCIKAILQSK 730 (1266)
T ss_pred --hhHHHHHHHHHhccchhhhhHHHHHHHHhcc---ccccccchhhhcchhhhhhHHHHcCCcchhHHHhhhhhHHhhhh
Confidence 2233444444432 2237788999998888 33333322223333221111111111112333343333333333
Q ss_pred HHHHHHHHHhhcCCCccccccchHHHHHHHHHhhccCccccCCCCChhhHhHhHHHHHHHHHHhhhccCCCCCHHHHHHH
Q 000315 798 IYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLT 877 (1678)
Q Consensus 798 i~aLK~Lvn~ll~~~~~~~~~~i~~ll~lL~~il~~GEl~~~~~tp~~~ksrLRLaAa~~lLKLAr~~d~~i~~d~f~l~ 877 (1678)
.. .+.+......+..........-.+...++.-|++... .|++.+..++..++..|+|.. .+....+.+.+.-.
T Consensus 731 ~~---~l~q~~~~~~d~l~~~~~~~~e~~~~~i~~lgei~~~--~p~~~~~~~k~~~~~~IvK~~-~~~~~~~~e~~~~~ 804 (1266)
T KOG1525|consen 731 FC---KLKQTFEEIKDNLLEDLTSELEGLRTPIVTLGEIFLD--LPSQFLDPLKSDVAKFIVKKV-LSNDDSPGEKNKSK 804 (1266)
T ss_pred hh---HHHHHhhhhHHHHhhhhhhhhhccccchhhhhhHhhh--ccHhhcchhhhhhHHHHHHHH-hcCCCccccccCcc
Confidence 33 2233333333221111111222333334455777653 458999999999999999998 66666655555222
Q ss_pred hhcccCCchhHHHHHHHHHHHhHhcCCCchhhHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHhhhhhcccccccc
Q 000315 878 LRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADIIQMHHQMKARQISVQSDANSFA 957 (1678)
Q Consensus 878 ~l~~qD~~~~VR~~Fl~KL~k~L~~~~L~~kY~~lf~la~~a~ep~~~~e~K~~l~~~i~~~~~~r~r~~s~~s~~~~~~ 957 (1678)
.++..+.. ++.-+++-++.. .-+.. |......+ .
T Consensus 805 ~~~P~~~~-------------------~~p~~~~k~~a~-------------~L~~~----------~l~~~~~d----~ 838 (1266)
T KOG1525|consen 805 EWLPSDKL-------------------LSPNTSLKVLAI-------------KLLVR----------RLLDLEED----K 838 (1266)
T ss_pred ccCCcccc-------------------cchhhhhHHHHH-------------HHhhh----------hccccccC----c
Confidence 22222211 111111111100 00000 00000000 1
Q ss_pred CCchhhhHH---HHhHccCCCCCCcchhhcHHHHHHHHHHHHHHHHHhhccCccccccccccccHHHHHHHHHHhhcccc
Q 000315 958 TYPEYIIPY---LVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIISIFRSIKCSED 1034 (1678)
Q Consensus 958 ~~pEy~Lpr---LIHlLAHH~~Pd~ee~~d~~a~~~~~~yL~F~L~~L~~~~~~~~~~~~~~eNiSlLy~La~rIKq~rD 1034 (1678)
...|+..+| +|..|.|-..+.-..+.+-.... .++. ..+ ..-+..+ ..++.+..
T Consensus 839 ~~~e~s~~~~~~~L~~ll~~~gdl~~~~~~~~~~~---sklr----~~a---------------~~~ilKl-~~~~~~~e 895 (1266)
T KOG1525|consen 839 EKDELSTPRSFRLLSKLLNSEGDLTEQNRDPKSDQ---SKLR----LTA---------------KITILKL-ASEKSYHE 895 (1266)
T ss_pred chhhhcchhHHHHHHHHHhhcCCCCcccCCcchhh---hhhh----hhh---------------hheeeec-ccccchhc
Confidence 122333333 55555555211111111101110 0000 000 0001111 12333333
Q ss_pred ccccccCcchHHHHHHHHHHHH-------HHhccCCCCcccccccCCCccccCCCCCCCcccccccccccccccchhhhh
Q 000315 1035 IVDAAKSKNSHAICDLGLSITK-------RLSRMEDNSQGVFSSVSLPSTLYKPYEKKEGDDSLASERQTWLADESVLTH 1107 (1678)
Q Consensus 1035 a~d~~~S~nlY~LcDLAq~IIk-------~~a~k~W~lqtyPGkV~LPs~LF~p~~s~~~~~a~~~~~K~yLpde~~l~~ 1107 (1678)
. .+-...+.+++.+.- .++.+ ++.+--++.||..+... .+-|.|+.....+
T Consensus 896 ~------~~~~~~~~~~~~i~de~~~vR~~f~~k---l~k~l~~i~lp~~~~a~-------------~~l~~~d~~~~~~ 953 (1266)
T KOG1525|consen 896 F------INAEQYEKLILLISDECLQVRLVFLLK---LHKGLSRIKLPLEYMAK-------------FKLCAPDVSKELL 953 (1266)
T ss_pred c------CCHHHHHHHHHHhcCCchhHHHHHHHH---ccccccccccchhhhhH-------------HHHhccchhhhhh
Confidence 3 344455555554443 22222 22222336666643322 3445555555555
Q ss_pred hhhhcccccccccc--hhhhcccccccccCCCccchhHHHHHhhcccccCCccccccCchhhhccCCCchhhhhhhhhcc
Q 000315 1108 FESLKLETHEVVGS--EIARHEALDDLEKDGNEVPLGKMIQQLKSQGAKGGKAKKKKSSPAEVKGTENDVDILQMVREIN 1185 (1678)
Q Consensus 1108 ~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1185 (1678)
.......+.+.++. ++....+. .+|- +.++-++.-++.+-..++.++.+++| ||+.|.++++++
T Consensus 954 ~~~~~~~t~~~~~~r~~t~~e~~~----s~~~----~~~~~e~V~~~~~~~la~d~~~~~~e------dv~~l~~~ke~~ 1019 (1266)
T KOG1525|consen 954 ANKREEETKNSASRREQTKFERAT----SDGT----LAHLPEYVGSYVIHLLAHDPDFVKAE------DVDSLSDLKECL 1019 (1266)
T ss_pred hHHHHhhhhcchhhhhhhhhhhcc----Cchh----hhhhhHHhhhhhhhhhccCccccccc------hhhhHHHHHHhH
Confidence 55666666666554 22222222 3343 77888888888888889999998888 999999999999
Q ss_pred cccccCccccccCCCCCCCCcccccchhhHHHHhhccCCcccc-cccCccccccccCCCCCCCCCCCC
Q 000315 1186 LDNLGVLNKFESSNGHKHFPSKQIKVDLENEEIKKRKATDVTS-FPVPKRRRSLSAHGGFRTPKSNSK 1252 (1678)
Q Consensus 1186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 1252 (1678)
+.-+..++.++.+|+|.+....+.+-..-....-.+.+++.++ +.|+.+.+.+..+.+..++.+..+
T Consensus 1020 ~~vl~~l~~~~~n~~~~~~~~~~~~~~~~~d~~s~~d~~~~~kl~~l~d~a~~i~~sk~~~~s~~~tt 1087 (1266)
T KOG1525|consen 1020 WFVLEDLDEENENNQHKFWKREKEEIKGSEDEESPDDVGDNIKLYTLCDLAQCIILSKSTKFSNSSTT 1087 (1266)
T ss_pred HHHHhhhhhhhccchhHHHHHHHhhhhcchhhcCCcccCCCceeeeHHhHHHHHHhcccccccCCCCC
Confidence 9999999999999999877555443222222222244444444 678888888888877777766655
No 3
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=98.95 E-value=1.3e-09 Score=95.39 Aligned_cols=45 Identities=33% Similarity=0.600 Sum_probs=36.9
Q ss_pred cccCceEEEecCCCCceEEEEEEeecCCCCeeEEEccCCcceeee
Q 000315 1378 DLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLR 1422 (1678)
Q Consensus 1378 ~lvG~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdDgd~E~l~ 1422 (1678)
--+|.+|++|||+++.||+|.|++||+.++.|+|.|+||++..|.
T Consensus 6 ~~~Ge~V~~rWP~s~lYYe~kV~~~d~~~~~y~V~Y~DGtel~lk 50 (55)
T PF09465_consen 6 FAIGEVVMVRWPGSSLYYEGKVLSYDSKSDRYTVLYEDGTELELK 50 (55)
T ss_dssp S-SS-EEEEE-TTTS-EEEEEEEEEETTTTEEEEEETTS-EEEEE
T ss_pred ccCCCEEEEECCCCCcEEEEEEEEecccCceEEEEEcCCCEEEec
Confidence 348999999999999999999999999999999999999995543
No 4
>PTZ00429 beta-adaptin; Provisional
Probab=98.63 E-value=0.0001 Score=96.84 Aligned_cols=392 Identities=12% Similarity=0.065 Sum_probs=208.8
Q ss_pred ccccCCChHHHHHHHH-HHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHH
Q 000315 269 GELLTDQLDTRLKAVG-LVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTAL 347 (1678)
Q Consensus 269 ~EL~sed~~~Rl~At~-llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L 347 (1678)
.+|.+.+...|+.|++ +++-|.-+ -+...-|+++-+.+ .=.+..+|.-+--++..+...+|+ .+--.++.|
T Consensus 39 ~~L~s~~~~~kk~alKkvIa~mt~G--~DvS~LF~dVvk~~----~S~d~elKKLvYLYL~~ya~~~pe--lalLaINtl 110 (746)
T PTZ00429 39 NDLNGTDSYRKKAAVKRIIANMTMG--RDVSYLFVDVVKLA----PSTDLELKKLVYLYVLSTARLQPE--KALLAVNTF 110 (746)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHCC--CCchHHHHHHHHHh----CCCCHHHHHHHHHHHHHHcccChH--HHHHHHHHH
Confidence 3444666777777765 66666543 35555556655543 344778887777776665555553 233568999
Q ss_pred HhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCcchhcccc
Q 000315 348 CDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEW 427 (1678)
Q Consensus 348 ~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~~w 427 (1678)
.+=|.|+++.||.-|+.++|.+-... +-+.++..+..-+.|+.+-||+.|.-+++++|+..- .....-+|
T Consensus 111 ~KDl~d~Np~IRaLALRtLs~Ir~~~---i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p-------elv~~~~~ 180 (746)
T PTZ00429 111 LQDTTNSSPVVRALAVRTMMCIRVSS---VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM-------QLFYQQDF 180 (746)
T ss_pred HHHcCCCCHHHHHHHHHHHHcCCcHH---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc-------ccccccch
Confidence 99999999999999888887654433 223355667777899999999999999999999642 11123456
Q ss_pred chHHHhhhhccCCCCchhHHHHhhccCcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000315 428 IPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMH 507 (1678)
Q Consensus 428 IPs~IL~~~Y~nd~~~~lVE~vL~e~LlP~~~~~~~R~~~ll~l~~~LD~~~~kal~~il~~k~~l~~~~~~~l~l~~~~ 507 (1678)
+|. +..+..+.|.. .+-.. +..|..+.. -++. .+. + ....+++++......
T Consensus 181 ~~~-L~~LL~D~dp~--Vv~nA---------------l~aL~eI~~-~~~~---~l~-l------~~~~~~~Ll~~L~e~ 231 (746)
T PTZ00429 181 KKD-LVELLNDNNPV--VASNA---------------AAIVCEVND-YGSE---KIE-S------SNEWVNRLVYHLPEC 231 (746)
T ss_pred HHH-HHHHhcCCCcc--HHHHH---------------HHHHHHHHH-hCch---hhH-H------HHHHHHHHHHHhhcC
Confidence 653 44443333322 11111 001111111 0110 010 0 111122222221111
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCc--h
Q 000315 508 QDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHR--L 585 (1678)
Q Consensus 508 ~~~d~~ei~~kl~~~i~~Ls~~fPDp~Ka~~~L~kf~klnD~Ri~kLLk~~idp~td~~tv~~a~kELlkkL~~k~~--~ 585 (1678)
+ +=.|- .+++.|+..-|+. -.++......++.+|...++ +
T Consensus 232 ---~-EW~Qi---~IL~lL~~y~P~~-------------------------------~~e~~~il~~l~~~Lq~~N~AVV 273 (746)
T PTZ00429 232 ---N-EWGQL---YILELLAAQRPSD-------------------------------KESAETLLTRVLPRMSHQNPAVV 273 (746)
T ss_pred ---C-hHHHH---HHHHHHHhcCCCC-------------------------------cHHHHHHHHHHHHHhcCCCHHHH
Confidence 0 11111 1233333322221 11122233444444444333 5
Q ss_pred HHHHHHHHHhhhccccChhHHHHHHHHHHhh---cccchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccccch
Q 000315 586 YDFLSTLSMKCSYLLFNKEHVKEILLEVAAQ---KSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIK 662 (1678)
Q Consensus 586 ~e~l~~Ll~R~S~lifNks~V~~LL~~v~~~---~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v~~Li~lL~~~~~~~~ 662 (1678)
++.++.+++-..+. +.+.+..++.++... -........-.+.+-|..|...+|.+|..+.+.+.-...|.. .+.
T Consensus 274 l~Aik~il~l~~~~--~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~-yIK 350 (746)
T PTZ00429 274 MGAIKVVANLASRC--SQELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPP-FVK 350 (746)
T ss_pred HHHHHHHHHhcCcC--CHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcH-HHH
Confidence 56666655443322 444444444333210 001111122345667788899999999987655543334332 367
Q ss_pred hhHHHHHHHhhcchHhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhhcC-CCch
Q 000315 663 EGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT-HLPA 741 (1678)
Q Consensus 663 e~aLkiLak~~k~i~e~~~~~~s~l~~~L~~lal~GtpkqAKyAVr~Laa~~~~~~~~~~~~L~~~L~~~L~~~~-~l~t 741 (1678)
...|.+|+..+.. ++ -..+..-|..|+.+-++.-++.||++|+.+.-.- ......++..|++-+.... ....
T Consensus 351 ~~KLeIL~~Lane--~N----v~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~-~~~a~~cV~~Ll~ll~~~~~~v~e 423 (746)
T PTZ00429 351 LEKLRLLLKLVTP--SV----APEILKELAEYASGVDMVFVVEVVRAIASLAIKV-DSVAPDCANLLLQIVDRRPELLPQ 423 (746)
T ss_pred HHHHHHHHHHcCc--cc----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHhcCCchhHHH
Confidence 7889999877632 11 1235566778888888999999999988666421 1223345555555554322 2223
Q ss_pred HHHHHHHHHhhccc
Q 000315 742 VLQSLGCIAQTAMP 755 (1678)
Q Consensus 742 ~L~sLg~Iaq~aP~ 755 (1678)
.+.++-.|.+..|.
T Consensus 424 ~i~vik~IlrkyP~ 437 (746)
T PTZ00429 424 VVTAAKDIVRKYPE 437 (746)
T ss_pred HHHHHHHHHHHCcc
Confidence 45556666665664
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=0.00052 Score=90.70 Aligned_cols=550 Identities=15% Similarity=0.164 Sum_probs=292.0
Q ss_pred HHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhccccc-CCChHHHHHHHHHHHHhhcCCCCCchh-h
Q 000315 223 GIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELL-TDQLDTRLKAVGLVGDLFAVPGSANNE-Q 300 (1678)
Q Consensus 223 ~I~q~f~~il~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~-sed~~~Rl~At~llG~mfs~~~s~~a~-~ 300 (1678)
.+.|.+...+.-|+. ....+-+.+..+|+--| ++|.|.+-+. +.++++|..|.-++-++++..-..+.. .
T Consensus 5 ~l~qLl~~l~spDn~---vr~~Ae~~l~~~~~~~~-----~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~ 76 (1075)
T KOG2171|consen 5 PLEQLLQQLLSPDNE---VRRQAEEALETLAKTEP-----LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEV 76 (1075)
T ss_pred HHHHHHHHhcCCCch---HHHHHHHHHHHhhcccc-----hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 344444444443321 12246777778898888 7777777777 779999999999999998764333322 2
Q ss_pred cHHHHHHHHhh-hcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCH
Q 000315 301 FHSVFSEFLKR-LTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV 379 (1678)
Q Consensus 301 y~~~w~~fL~R-~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~ 379 (1678)
-.++=...|.- ..-..+.||.+..+.+..|-.+--.. .-++++..|..+..++|+..|-.|+-.+..+...-......
T Consensus 77 ~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~ 155 (1075)
T KOG2171|consen 77 QQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQP 155 (1075)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccch
Confidence 22222222222 24578899999999888876654321 45799999999999999999999999988876543333332
Q ss_pred ---HHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCcchhcc-ccchHHHhhhhccCCCCchhHHHHhhccCc
Q 000315 380 ---ETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEF-EWIPGKILRCLYDKDFGSDTIESVLCGSLF 455 (1678)
Q Consensus 380 ---elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~-~wIPs~IL~~~Y~nd~~~~lVE~vL~e~Ll 455 (1678)
+++..+..-|-|-...||-.|.++++.+.... +++......| .-+|+-|.-+-- .+
T Consensus 156 ~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~----~~~~~~~~~~~~llP~~l~vl~~----------------~i 215 (1075)
T KOG2171|consen 156 HLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYL----ENNKSEVDKFRDLLPSLLNVLQE----------------VI 215 (1075)
T ss_pred hHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHh----ccchHHHHHHHHHhHHHHHHhHh----------------hh
Confidence 67778889999999999999999999876542 1222333344 455655543310 00
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhh--hcCCCcHHHHHHHHHHHHHHHhhcCC
Q 000315 456 PTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQR-LQQEMQRYLSLRQM--HQDGDAPEIQKKILFCFRVMSRSFAE 532 (1678)
Q Consensus 456 P~~~~~~~R~~~ll~l~~~LD~~~~kal~~il~~k~~-l~~~~~~~l~l~~~--~~~~d~~ei~~kl~~~i~~Ls~~fPD 532 (1678)
+.. ..+....+| ++|..++..-.+ ++..+...|+++-. .+..-++.+....-.+|-+++..-|-
T Consensus 216 ~~~-----d~~~a~~~l--------~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~ 282 (1075)
T KOG2171|consen 216 QDG-----DDDAAKSAL--------EALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPA 282 (1075)
T ss_pred hcc-----chHHHHHHH--------HHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHH
Confidence 000 000000111 111111111111 22233333444321 11112233333333455555555332
Q ss_pred chHHHHHHHHHHhhccHHHHHHHHHHhcCC-----------------CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHh
Q 000315 533 PAKAEENFLILDQLKDANVWKILMNLLDSN-----------------TSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMK 595 (1678)
Q Consensus 533 p~Ka~~~L~kf~klnD~Ri~kLLk~~idp~-----------------td~~tv~~a~kELlkkL~~k~~~~e~l~~Ll~R 595 (1678)
..| +...+-++=+-.++.-..+.+ +.+.-+..+.+-+-..||++..+.-++.
T Consensus 283 ~~k------~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~----- 351 (1075)
T KOG2171|consen 283 MCK------KLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFE----- 351 (1075)
T ss_pred Hhh------hchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHH-----
Confidence 222 222222222222333222222 2333444445555555555433222222
Q ss_pred hhccccChhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccHHHHHH----HHhhccccchhhHHHHHHH
Q 000315 596 CSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVN----LLKEENEIIKEGILHVLAK 671 (1678)
Q Consensus 596 ~S~lifNks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v~~Li~----lL~~~~~~~~e~aLkiLak 671 (1678)
+++.++. +.+-.....++--|-.|+.=|+.+..++..+++. .|.|..|.+...++.++.+
T Consensus 352 ---------~l~~~l~-------S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ 415 (1075)
T KOG2171|consen 352 ---------ALEAMLQ-------STEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQ 415 (1075)
T ss_pred ---------HHHHHhc-------CCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 1222221 2221223334444555666666666666555544 4555667788889999987
Q ss_pred hhcchHhhhhccc-chHHHH-HHHHhhcCChHHHHHHHHHHHhhcCCCccc----hHHHHHHHHHHhhhhc-C--CCchH
Q 000315 672 AGGTIREQLAATS-SSVDLL-LERLCLEGSRRQAKYAVHALAAITKDDGLK----SLSVLYKRLVDMLEEK-T--HLPAV 742 (1678)
Q Consensus 672 ~~k~i~e~~~~~~-s~l~~~-L~~lal~GtpkqAKyAVr~Laa~~~~~~~~----~~~~L~~~L~~~L~~~-~--~l~t~ 742 (1678)
.+..+...+.... ..+.+. +..+-..++++.-.||+.+|....-.-... ++..|++.....|..+ + -...+
T Consensus 416 ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~v 495 (1075)
T KOG2171|consen 416 MSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQA 495 (1075)
T ss_pred hhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHH
Confidence 6644221111101 112212 222334577888889988887554322112 3333444333334322 2 44557
Q ss_pred HHHHHHHHhhcccccccchHHHHHHHHHhhhccccccCCCCCCCCCCchhhHHHHHHHHHHHHHhhcCCCccccccchHH
Q 000315 743 LQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDD 822 (1678)
Q Consensus 743 L~sLg~Iaq~aP~vfe~~~~eI~~fIik~ILl~~~~~~~~~~~~W~d~se~~~aKi~aLK~Lvn~ll~~~~~~~~~~i~~ 822 (1678)
+++||.+|.-+-.-|..+-+.++.++. ++|..+.. ++-.+.+.|. +.|+.-.-++...+.+.+.+..
T Consensus 496 vtaIasvA~AA~~~F~pY~d~~Mp~L~-~~L~n~~~----------~d~r~Lrgkt--mEcisli~~AVGke~F~~~a~e 562 (1075)
T KOG2171|consen 496 VTAIASVADAAQEKFIPYFDRLMPLLK-NFLQNADD----------KDLRELRGKT--MECLSLIARAVGKEKFLPLAEE 562 (1075)
T ss_pred HHHHHHHHHHHhhhhHhHHHHHHHHHH-HHHhCCCc----------hhhHHHHhhH--HHHHHHHHHHhhhhhhhHhHHH
Confidence 889999999998889998889999875 45444321 1122333343 5555544445544556777777
Q ss_pred HHHHHHHhhccCccccCCC-CChhhHhHhHHHHH
Q 000315 823 LLGILKSMLSYGEMSEDIE-SSSVDKAHLRLASA 855 (1678)
Q Consensus 823 ll~lL~~il~~GEl~~~~~-tp~~~ksrLRLaAa 855 (1678)
++.+|-.+- +|+.....+ ++....+|-|++-+
T Consensus 563 liqll~~~~-~~~~~~dd~~~sy~~~~warmc~i 595 (1075)
T KOG2171|consen 563 LIQLLLELQ-GSDQDDDDPLRSYMIAFWARMCRI 595 (1075)
T ss_pred HHHHHHhhc-ccchhhccccHHHHHHHHHHHHHH
Confidence 887765432 334433222 23344555555443
No 6
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.22 E-value=0.015 Score=78.71 Aligned_cols=135 Identities=21% Similarity=0.282 Sum_probs=102.2
Q ss_pred chhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCC
Q 000315 297 NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS 376 (1678)
Q Consensus 297 ~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~ 376 (1678)
|...|....+.-|+=..--.+.||..+++|...|....|.-.-..++-.++..|++|+---||-|||.-|+.......+.
T Consensus 810 f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~ 889 (1692)
T KOG1020|consen 810 FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPEL 889 (1692)
T ss_pred HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHH
Confidence 45555555555555556778999999999999998887764334688899999999999999999999998755444333
Q ss_pred CCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCcchhccccchHHHhhhh-ccCCCCc
Q 000315 377 IPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCL-YDKDFGS 443 (1678)
Q Consensus 377 V~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~~wIPs~IL~~~-Y~nd~~~ 443 (1678)
+ .+....+++|+.|--..||+.||+-|-.+|-.+ +.|.-||..+-... .++|-+.
T Consensus 890 ~-~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~-----------pdf~~i~~~cakmlrRv~DEEg 945 (1692)
T KOG1020|consen 890 I-FQYYDQIIERILDTGVSVRKRVIKILRDICEET-----------PDFSKIVDMCAKMLRRVNDEEG 945 (1692)
T ss_pred H-HHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhC-----------CChhhHHHHHHHHHHHhccchh
Confidence 2 345678899999999999999999999999864 34666666555443 3566553
No 7
>PTZ00429 beta-adaptin; Provisional
Probab=98.16 E-value=0.0047 Score=81.57 Aligned_cols=337 Identities=15% Similarity=0.101 Sum_probs=187.6
Q ss_pred HHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHH
Q 000315 246 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 325 (1678)
Q Consensus 246 h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve 325 (1678)
|--+..+.+..|++..-++..|...|.+.|+.+|-+|.+++|.+-. ..-.+.+.....+-..|.+|-||...+-
T Consensus 89 YLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~------~~i~e~l~~~lkk~L~D~~pYVRKtAal 162 (746)
T PTZ00429 89 YLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV------SSVLEYTLEPLRRAVADPDPYVRKTAAM 162 (746)
T ss_pred HHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc------HHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 4444445566899999999999999999999999999999996543 2333456666667788999999999999
Q ss_pred HhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHH
Q 000315 326 HVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLA 405 (1678)
Q Consensus 326 ~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La 405 (1678)
++..+...+|+.-....+++.|.+.|.|.|..|-..|+.++.++....... +... ...+-
T Consensus 163 ai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~-----l~l~---------------~~~~~ 222 (746)
T PTZ00429 163 GLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK-----IESS---------------NEWVN 222 (746)
T ss_pred HHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh-----hHHH---------------HHHHH
Confidence 999998888864333457778888899999999999999998875433221 1100 11111
Q ss_pred HHHHHHhhhccCCCcchhccccchHHHhhhhccCCCCc-hhHHHHhhccCcCC--CCCHHH---HHHHHHHHHhcCCHHH
Q 000315 406 DIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGS-DTIESVLCGSLFPT--GFSVKD---RVRHWVRIFSGFDRIE 479 (1678)
Q Consensus 406 ~LY~~~~~~~~~~~~~~~~~~wIPs~IL~~~Y~nd~~~-~lVE~vL~e~LlP~--~~~~~~---R~~~ll~l~~~LD~~~ 479 (1678)
+++.. + .+.=.|-.-.||+++..-.+.. .-.+.+ .+.++|. ..++.- =++.++.+....++.
T Consensus 223 ~Ll~~----L------~e~~EW~Qi~IL~lL~~y~P~~~~e~~~i-l~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~- 290 (746)
T PTZ00429 223 RLVYH----L------PECNEWGQLYILELLAAQRPSDKESAETL-LTRVLPRMSHQNPAVVMGAIKVVANLASRCSQE- 290 (746)
T ss_pred HHHHH----h------hcCChHHHHHHHHHHHhcCCCCcHHHHHH-HHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHH-
Confidence 12221 1 1122677778887753211111 111112 2223332 112211 122222222222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhccHHHHHHHHHHh
Q 000315 480 MKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLL 559 (1678)
Q Consensus 480 ~kal~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kl~~~i~~Ls~~fPDp~Ka~~~L~kf~klnD~Ri~kLLk~~i 559 (1678)
.....+ .+.-.-++.+. ...++++=-.-..|..|...+|.-... .+..|+ |.
T Consensus 291 --~~~~~~------~rl~~pLv~L~-----ss~~eiqyvaLr~I~~i~~~~P~lf~~--~~~~Ff-------------~~ 342 (746)
T PTZ00429 291 --LIERCT------VRVNTALLTLS-----RRDAETQYIVCKNIHALLVIFPNLLRT--NLDSFY-------------VR 342 (746)
T ss_pred --HHHHHH------HHHHHHHHHhh-----CCCccHHHHHHHHHHHHHHHCHHHHHH--HHHhhh-------------cc
Confidence 111111 11112223331 123455544444566666666533221 233332 11
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhccccChhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhC
Q 000315 560 DSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFS 639 (1678)
Q Consensus 560 dp~td~~tv~~a~kELlkkL~~k~~~~e~l~~Ll~R~S~lifNks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~ 639 (1678)
-.+.+| ++...=+++-+| .|.+||..|++.+.....+.+......+..-+..++..+
T Consensus 343 ~~Dp~y--IK~~KLeIL~~L---------------------ane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~ 399 (746)
T PTZ00429 343 YSDPPF--VKLEKLRLLLKL---------------------VTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKV 399 (746)
T ss_pred cCCcHH--HHHHHHHHHHHH---------------------cCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC
Confidence 112222 222223444443 455566666666554433333445566666777788889
Q ss_pred CcCccccHHHHHHHHhhccccchhhHHHHHHHh
Q 000315 640 PLLLGGTEEELVNLLKEENEIIKEGILHVLAKA 672 (1678)
Q Consensus 640 P~lFk~~v~~Li~lL~~~~~~~~e~aLkiLak~ 672 (1678)
|.....++..|+++|....+. +..++.++..+
T Consensus 400 ~~~a~~cV~~Ll~ll~~~~~~-v~e~i~vik~I 431 (746)
T PTZ00429 400 DSVAPDCANLLLQIVDRRPEL-LPQVVTAAKDI 431 (746)
T ss_pred hHHHHHHHHHHHHHhcCCchh-HHHHHHHHHHH
Confidence 999999999999999764332 33455555544
No 8
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.07 E-value=0.12 Score=67.77 Aligned_cols=382 Identities=16% Similarity=0.172 Sum_probs=210.1
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhcchhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCChhHHHH
Q 000315 21 STKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKD 100 (1678)
Q Consensus 21 ~s~~eLlkrL~~L~~~Ls~~dQ~~~~~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~APdaPytd~qLkd 100 (1678)
..+.+|..+|++-.-.| | .++...+.+.|+ ++|.-++.+|+-++.-||+=|.- --..++++.
T Consensus 24 MAtsDLm~eLqkdsi~L---d-------~dSe~kvv~~lL--klL~D~ngEVQnlAVKClg~lvs------Kvke~~le~ 85 (1233)
T KOG1824|consen 24 MATSDLMTELQKDSIKL---D-------DDSERKVVKMLL--KLLEDKNGEVQNLAVKCLGPLVS------KVKEDQLET 85 (1233)
T ss_pred hhHHHHHHHHHhhhhhc---c-------ccchhHHHHHHH--HHHhccCcHHHHHHHHHHHHHHh------hchHHHHHH
Confidence 45667888877753332 2 233445555554 47888999999999999875541 112345555
Q ss_pred HHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHHh----hcC-CChhhHHHHHHHHH
Q 000315 101 IFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAV----ASD-DHPESVLSSMQTIM 175 (1678)
Q Consensus 101 IF~l~v~qf~~L~d~~~p~f~~~~~lLe~lA~vks~vl~~DL~~~~Li~~lF~~ff~~----v~~-~~~~~V~~~m~~IL 175 (1678)
+-.=+..-+ +++.+.--|.-...|...++++.-++ ...+-..+|+.|... +.. +.-..+.-..++||
T Consensus 86 ~ve~L~~~~--~s~keq~rdissi~Lktvi~nl~P~~------~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil 157 (1233)
T KOG1824|consen 86 IVENLCSNM--LSGKEQLRDISSIGLKTVIANLPPSS------SSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDIL 157 (1233)
T ss_pred HHHHHhhhh--ccchhhhccHHHHHHHHHHhcCCCcc------ccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHH
Confidence 544333321 23333333444455555555543111 123333444444433 222 12223556678888
Q ss_pred HHHhcccccc-cH---HHHHHHHHHhcCCCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCC--CCCCCCcch-HHHH
Q 000315 176 IVLLEESEDI-QE---DLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGD--SRPGHSHID-YHEV 248 (1678)
Q Consensus 176 ~~vI~Ese~v-p~---~lLd~IL~~l~~~k~~~a~~LA~~vi~~~~dkL~~~I~q~f~~il~~d--~~~~~~~~~-~h~L 248 (1678)
..++.-...+ |+ .++.+++-++..++. +-++=|.-.+-.-+....+.+-.++.+.+..+ +....+..+ +-..
T Consensus 158 ~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~-aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~ 236 (1233)
T KOG1824|consen 158 ADVLSRFGTLLPNFHLSILKCLLPQLQSPRL-AVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQC 236 (1233)
T ss_pred HHHHHhhcccCcchHHHHHHHHhhcccChHH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHH
Confidence 8888876653 32 344444444433221 22222222222222222233323333322211 112222222 3344
Q ss_pred HHHHHhhCc----hhhhhhhhhhcccc---cCCChHHHHHHHHHHHHhhcCCCC---------------------Cch-h
Q 000315 249 IYDVYRCSP----QILSGVVPYLTGEL---LTDQLDTRLKAVGLVGDLFAVPGS---------------------ANN-E 299 (1678)
Q Consensus 249 i~eL~~~~P----~lL~~ViP~Le~EL---~sed~~~Rl~At~llG~mfs~~~s---------------------~~a-~ 299 (1678)
|-+|.+.+= .-+..++|.+.+.. ..++.++|....+.++-.+--..- |+. .
T Consensus 237 l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd 316 (1233)
T KOG1824|consen 237 LAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYD 316 (1233)
T ss_pred HHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCC
Confidence 444444432 33455777777777 788999999999988865543211 110 0
Q ss_pred hcHHHHHHHHhh------------hcCCChhHHHHHHHHhHHHHhcCCCC--CChHHHHHHHHhhhCCChhHHHHHHHHH
Q 000315 300 QFHSVFSEFLKR------------LTDRIVAVRMSVLEHVKSCLLTDPSR--ADAPQILTALCDRLLDFDENVRKQVVAV 365 (1678)
Q Consensus 300 ~y~~~w~~fL~R------------~~D~s~~VR~~~ve~~~~iL~~~p~~--~~~~eii~~L~~rL~D~DEkVR~aaV~a 365 (1678)
+.-+.=..|+.- =.|.+=.||.+..++....+.++++. .--+.+-..|..|+.|-+|.|+..+..+
T Consensus 317 ~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~ 396 (1233)
T KOG1824|consen 317 TEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHA 396 (1233)
T ss_pred CccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHH
Confidence 001122222222 23556679999999999999887642 1123455788889999999999999999
Q ss_pred HHHhhhhhcCCC---------------------CH---HHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCcc
Q 000315 366 ICDVACHALNSI---------------------PV---ETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSIN 421 (1678)
Q Consensus 366 i~~la~~~l~~V---------------------~~---elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~~~~~ 421 (1678)
+.++-......+ +. -+++.++.-+|+|+..-|.-|+..|..+-+.+.....
T Consensus 397 yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~----- 471 (1233)
T KOG1824|consen 397 YIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALA----- 471 (1233)
T ss_pred HHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhh-----
Confidence 988754332221 11 2457889999999999999999999999998743221
Q ss_pred hhccccchHHHhh
Q 000315 422 QNEFEWIPGKILR 434 (1678)
Q Consensus 422 ~~~~~wIPs~IL~ 434 (1678)
...+.-+|+-+..
T Consensus 472 ~~~~slvpgI~~~ 484 (1233)
T KOG1824|consen 472 QHIPSLVPGIIYS 484 (1233)
T ss_pred hcccccchhhhhh
Confidence 1234455655543
No 9
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.00 E-value=0.0019 Score=82.12 Aligned_cols=117 Identities=16% Similarity=0.161 Sum_probs=98.9
Q ss_pred HHHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHH
Q 000315 245 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVL 324 (1678)
Q Consensus 245 ~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~v 324 (1678)
.|-.+..++...|+++.-++..|...|.++|+.+|-.|.++++.+-. ..--+.+...-..-..|.+|.||...+
T Consensus 62 ~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~------~~~~~~l~~~v~~ll~~~~~~VRk~A~ 135 (526)
T PF01602_consen 62 GYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRT------PEMAEPLIPDVIKLLSDPSPYVRKKAA 135 (526)
T ss_dssp HHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S------HHHHHHHHHHHHHHHHSSSHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc------cchhhHHHHHHHHHhcCCchHHHHHHH
Confidence 46667788899999999999999999999999999999999999662 223355666667777899999999999
Q ss_pred HHhHHHHhcCCCCCChHH-HHHHHHhhhCCChhHHHHHHHHHHHHh
Q 000315 325 EHVKSCLLTDPSRADAPQ-ILTALCDRLLDFDENVRKQVVAVICDV 369 (1678)
Q Consensus 325 e~~~~iL~~~p~~~~~~e-ii~~L~~rL~D~DEkVR~aaV~ai~~l 369 (1678)
-++.++....|+. ... +++.|...|.|.|..|+.+|+.+++++
T Consensus 136 ~~l~~i~~~~p~~--~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 136 LALLKIYRKDPDL--VEDELIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHHHHHHCHCC--HHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCHHH--HHHHHHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 9999999888863 334 789999999999999999999999887
No 10
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.95 E-value=0.1 Score=71.33 Aligned_cols=341 Identities=18% Similarity=0.173 Sum_probs=200.4
Q ss_pred chhhhcCCCcchHHHHHHHHHHHHhh-cCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHH-hhhhhhh
Q 000315 61 QPVLLKHQDKDVKLLVATCICEITRI-TAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLA-KYRSCVV 138 (1678)
Q Consensus 61 ~~~LL~HkD~~Vr~~vAcCLadIlRI-~APdaPytd~qLkdIF~l~v~qf~~L~d~~~p~f~~~~~lLe~lA-~vks~vl 138 (1678)
.+++=+..+.+.|.+.---+-|+|=. +-|+=|=+..-|.-.-.+++.+|.. ...+-..=.-..-+|-++| ++|-.-+
T Consensus 588 ~rc~s~~~e~d~r~LfeNfvqDLLs~ln~PEWPatE~ILs~Lg~~Lv~~~s~-ks~~~sir~asLdlLG~IaarLrkd~v 666 (1692)
T KOG1020|consen 588 ERCFSKQGEEDYRILFENFVQDLLSALNLPEWPATELILSLLGKLLVHNFSN-KSVDVSIRTASLDLLGTIAARLRKDAV 666 (1692)
T ss_pred HHHhccCChhHHHHHHHHHHHHHHHHccCCcCccHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33433435558888888888888764 4588887777777777778888762 1111111122233444443 2222111
Q ss_pred cc--------------cCC-chHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHhc---CC
Q 000315 139 ML--------------DLE-CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALG---RN 200 (1678)
Q Consensus 139 ~~--------------DL~-~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~vp~~lLd~IL~~l~---~~ 200 (1678)
.+ +.+ .+.=+..+++++.+....... ..=++.++.--..+.+-..++.+.... .+
T Consensus 667 ~s~l~~g~v~~~~~~~s~~~~~~k~~~l~~~Lldfl~~~~~-------~~~~~~v~~~~fyi~~w~~d~~le~~~~~~~~ 739 (1692)
T KOG1020|consen 667 LSKLEQGSVDRELDQDSEEKHNIKLIVLQKTLLDFLKSNTE-------ETALSEVYACHFYIAQWYRDTRLETILIMEEN 739 (1692)
T ss_pred HHHHhhccchhhhhhcccccccchhhhhHHHHHHHHHHhhh-------ccchhhHHHhhHHHHhHHHHHHHHHHHHHHhc
Confidence 11 000 011122233332222110000 000011111111233333333333221 11
Q ss_pred C------cH---HHHHHHHHHHHHhhhhhHHHHHHHHHH--hhcCCCC-CCCCcchHHHHHHHHHhhCchhhhhhhhhhc
Q 000315 201 K------ND---TARRLAMNVIEQCAGKLEAGIKQFLVS--SMSGDSR-PGHSHIDYHEVIYDVYRCSPQILSGVVPYLT 268 (1678)
Q Consensus 201 k------~~---~a~~LA~~vi~~~~dkL~~~I~q~f~~--il~~d~~-~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le 268 (1678)
+ .. -.+.++.+.+..-..+++-++.+.-.. ...+... ......+.-.+|+..-..+-++..+.=|+|.
T Consensus 740 kd~~s~~~~~~~~~~el~~~~v~~~~n~~K~~~~~Ik~~~~~~~~~~~~s~~~d~~~a~li~~~la~~r~f~~sfD~yLk 819 (1692)
T KOG1020|consen 740 KDVDSNEGTHHWFSFELAYEKVITVENELKYILSKIKDKEKSGRGPKLNSRFADDDDAKLIVFYLAHARSFSQSFDPYLK 819 (1692)
T ss_pred cCccccccchhHHHHHHHHHHHhhhHHHHHHHHHHhcchhhhccCcCCCCccccchhHHHHHHHHHhhhHHHHhhHHHHH
Confidence 1 11 334666666655555555444332111 0001000 1111222334444444445555555444444
Q ss_pred cc---ccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHH
Q 000315 269 GE---LLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILT 345 (1678)
Q Consensus 269 ~E---L~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~ 345 (1678)
.- |..+...+|.+|.+.|..|...+. .+-.+|+.=.+--+|++|-+..||-+.|+.++.+++++|+ .+.+.-.
T Consensus 820 ~Il~~l~e~~ialRtkAlKclS~ive~Dp--~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e--~~~qyY~ 895 (1692)
T KOG1020|consen 820 LILSVLGENAIALRTKALKCLSMIVEADP--SVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPE--LIFQYYD 895 (1692)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHhcCh--HhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHH--HHHHHHH
Confidence 33 335679999999999999998864 5778999999999999999999999999999999999986 3668889
Q ss_pred HHHhhhCCChhHHHHHHHHHHHHhhhhhcCCC-CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhh
Q 000315 346 ALCDRLLDFDENVRKQVVAVICDVACHALNSI-PVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCL 413 (1678)
Q Consensus 346 ~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V-~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~ 413 (1678)
.+..|..|+---||..|++.++++....++.. -+++...+..|+-|=--.|.+-+.+.+.++|-.=+.
T Consensus 896 ~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~ 964 (1692)
T KOG1020|consen 896 QIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVP 964 (1692)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999766544422 235566677999999888999999999999986443
No 11
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.56 E-value=0.086 Score=67.23 Aligned_cols=239 Identities=14% Similarity=0.213 Sum_probs=157.4
Q ss_pred hHHHHHHHHHhhCchhhhh-hhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHH
Q 000315 244 DYHEVIYDVYRCSPQILSG-VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMS 322 (1678)
Q Consensus 244 ~~h~Li~eL~~~~P~lL~~-ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~ 322 (1678)
++-..+..+++..|+++.. ++|.|..-|...+..++..|+.++..+ ..++..+..-.+.++........+.+|-+++.
T Consensus 133 ~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~ 211 (526)
T PF01602_consen 133 KAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIK 211 (526)
T ss_dssp HHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHH
Confidence 4667788899999999988 799999999999999999999999999 32221122334555555555558999999999
Q ss_pred HHHHhHHHHhcCCCCCCh--HHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHH
Q 000315 323 VLEHVKSCLLTDPSRADA--PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYT 400 (1678)
Q Consensus 323 ~ve~~~~iL~~~p~~~~~--~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eA 400 (1678)
.++....+....+. .. ..+++.+...|......|+.+++.++..+..... +-...+..+..-+.++.+.||-.|
T Consensus 212 il~~l~~~~~~~~~--~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~--~~~~~~~~L~~lL~s~~~nvr~~~ 287 (526)
T PF01602_consen 212 ILRLLRRYAPMEPE--DADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE--LLQKAINPLIKLLSSSDPNVRYIA 287 (526)
T ss_dssp HHHHHTTSTSSSHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH--HHHHHHHHHHHHHTSSSHHHHHHH
T ss_pred HHHHHHhcccCChh--hhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH--HHHhhHHHHHHHhhcccchhehhH
Confidence 99988765443332 23 4688999999999999999999999987655433 223456677888889999999999
Q ss_pred HHHHHHHHHHHhhhccCCCcchhccccchHHHhhhhccCCCCchhHHHHhhccCcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 000315 401 MERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEM 480 (1678)
Q Consensus 401 m~~La~LY~~~~~~~~~~~~~~~~~~wIPs~IL~~~Y~nd~~~~lVE~vL~e~LlP~~~~~~~R~~~ll~l~~~LD~~~~ 480 (1678)
+..|..+-..+. ..+. -+..++.++- ...+..-|...+--++.-.++...
T Consensus 288 L~~L~~l~~~~~----------~~v~-~~~~~~~~l~-------------------~~~d~~Ir~~~l~lL~~l~~~~n~ 337 (526)
T PF01602_consen 288 LDSLSQLAQSNP----------PAVF-NQSLILFFLL-------------------YDDDPSIRKKALDLLYKLANESNV 337 (526)
T ss_dssp HHHHHHHCCHCH----------HHHG-THHHHHHHHH-------------------CSSSHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHhhcccc----------hhhh-hhhhhhheec-------------------CCCChhHHHHHHHHHhhcccccch
Confidence 988877765531 1111 1222222211 112333455555555555666544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCc
Q 000315 481 KALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEP 533 (1678)
Q Consensus 481 kal~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kl~~~i~~Ls~~fPDp 533 (1678)
+. +-..+.+|+. +..+++++..+...|..++..||..
T Consensus 338 ~~----------Il~eL~~~l~------~~~d~~~~~~~i~~I~~la~~~~~~ 374 (526)
T PF01602_consen 338 KE----------ILDELLKYLS------ELSDPDFRRELIKAIGDLAEKFPPD 374 (526)
T ss_dssp HH----------HHHHHHHHHH------HC--HHHHHHHHHHHHHHHHHHGSS
T ss_pred hh----------HHHHHHHHHH------hccchhhhhhHHHHHHHHHhccCch
Confidence 32 2233444441 1234557888888888888888553
No 12
>PRK09687 putative lyase; Provisional
Probab=97.54 E-value=0.00053 Score=81.10 Aligned_cols=145 Identities=17% Similarity=0.138 Sum_probs=102.5
Q ss_pred HHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhh-hcCCChhHHHHHH
Q 000315 246 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKR-LTDRIVAVRMSVL 324 (1678)
Q Consensus 246 h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R-~~D~s~~VR~~~v 324 (1678)
+..+..|..+-.. .|++.+..-+.+++..+|..|+..||.| +.++.. -+.++.....- .+|.++.||...+
T Consensus 41 ~~A~~aL~~~~~~---~~~~~l~~ll~~~d~~vR~~A~~aLg~l-g~~~~~----~~~a~~~L~~l~~~D~d~~VR~~A~ 112 (280)
T PRK09687 41 ISSIRVLQLRGGQ---DVFRLAIELCSSKNPIERDIGADILSQL-GMAKRC----QDNVFNILNNLALEDKSACVRASAI 112 (280)
T ss_pred HHHHHHHHhcCcc---hHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCccc----hHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 4456666655432 2333344446788999999999999985 433221 12333333333 4899999999999
Q ss_pred HHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHH
Q 000315 325 EHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERL 404 (1678)
Q Consensus 325 e~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~L 404 (1678)
...+++=...+.. ...++..+...+.|.+..||.+|+.+++.+. +.+.+..|...+.|..+.||..|+..|
T Consensus 113 ~aLG~~~~~~~~~--~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~-------~~~ai~~L~~~L~d~~~~VR~~A~~aL 183 (280)
T PRK09687 113 NATGHRCKKNPLY--SPKIVEQSQITAFDKSTNVRFAVAFALSVIN-------DEAAIPLLINLLKDPNGDVRNWAAFAL 183 (280)
T ss_pred HHHhccccccccc--chHHHHHHHHHhhCCCHHHHHHHHHHHhccC-------CHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 9998752222111 2367788888999999999999998886532 345678888999999999999999999
Q ss_pred HHH
Q 000315 405 ADI 407 (1678)
Q Consensus 405 a~L 407 (1678)
|.+
T Consensus 184 g~~ 186 (280)
T PRK09687 184 NSN 186 (280)
T ss_pred hcC
Confidence 998
No 13
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.093 Score=67.64 Aligned_cols=131 Identities=15% Similarity=0.193 Sum_probs=94.0
Q ss_pred cccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHh
Q 000315 270 ELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCD 349 (1678)
Q Consensus 270 EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~ 349 (1678)
-|.+.....-+.|.+-+=-|++. |-+... +|-+-.+-..-++++|+..+-=+.-+.-..+|+... -=+..+++
T Consensus 43 lLdSnkd~~KleAmKRIia~iA~-G~dvS~----~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL--LSIntfQk 115 (968)
T KOG1060|consen 43 LLDSNKDSLKLEAMKRIIALIAK-GKDVSL----LFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL--LSINTFQK 115 (968)
T ss_pred HHhccccHHHHHHHHHHHHHHhc-CCcHHH----HHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee--eeHHHHHh
Confidence 35567777777887765555554 434444 445555566667888887765555555556775432 23689999
Q ss_pred hhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000315 350 RLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1678)
Q Consensus 350 rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~ 410 (1678)
-|.|+...+|.-|+.++..+-.. .|-.=+|-++.+-++|-.+-||+.|..++-++|..
T Consensus 116 ~L~DpN~LiRasALRvlSsIRvp---~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL 173 (968)
T KOG1060|consen 116 ALKDPNQLIRASALRVLSSIRVP---MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL 173 (968)
T ss_pred hhcCCcHHHHHHHHHHHHhcchh---hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC
Confidence 99999999999988887554332 23333677899999999999999999999999985
No 14
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.24 Score=64.36 Aligned_cols=353 Identities=18% Similarity=0.153 Sum_probs=204.7
Q ss_pred hhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCC
Q 000315 260 LSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRAD 339 (1678)
Q Consensus 260 L~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~ 339 (1678)
|.-+.-.|...|++.+--+==+|.-+||.|++. .++. ++.-+--.-.+-.++-||.+.+-|+-.++..-|+.
T Consensus 105 llLltNslknDL~s~nq~vVglAL~alg~i~s~---Emar---dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l-- 176 (866)
T KOG1062|consen 105 LLLLTNSLKNDLNSSNQYVVGLALCALGNICSP---EMAR---DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL-- 176 (866)
T ss_pred HHHHHHHHHhhccCCCeeehHHHHHHhhccCCH---HHhH---HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH--
Confidence 334455778899999988889999999999975 3443 33332222333378999999999999999988863
Q ss_pred hHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCC
Q 000315 340 APQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGS 419 (1678)
Q Consensus 340 ~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~~~ 419 (1678)
.+-++.....+|.|-+..|=.++|.-+.++....++ .+. +-|| ....|-.+-+.... +.
T Consensus 177 ~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~-----~l~----~fr~--------l~~~lV~iLk~l~~----~~ 235 (866)
T KOG1062|consen 177 VEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPD-----ALS----YFRD--------LVPSLVKILKQLTN----SG 235 (866)
T ss_pred HHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHH-----HHH----HHHH--------HHHHHHHHHHHHhc----CC
Confidence 456788899999999999999988888776655432 221 1111 22223333332211 11
Q ss_pred cch-hccccchHHHhhhhccCCCCchhHHHHhhccCcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 000315 420 INQ-NEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQ 498 (1678)
Q Consensus 420 ~~~-~~~~wIPs~IL~~~Y~nd~~~~lVE~vL~e~LlP~~~~~~~R~~~ll~l~~~LD~~~~kal~~il~~k~~l~~~~~ 498 (1678)
..+ -.+..||.=.|++ |.-|++.+++.-|+.+...+..+|.+..+
T Consensus 236 yspeydv~gi~dPFLQi----------------------------~iLrlLriLGq~d~daSd~M~DiLaqvat------ 281 (866)
T KOG1062|consen 236 YSPEYDVHGISDPFLQI----------------------------RILRLLRILGQNDADASDLMNDILAQVAT------ 281 (866)
T ss_pred CCCccCccCCCchHHHH----------------------------HHHHHHHHhcCCCccHHHHHHHHHHHHHh------
Confidence 111 1244444444432 56678888888888888777777765432
Q ss_pred HHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCch---HHHHHHHHHHhhccHHHHH-HHHHHhcC-CCCHHHHHHHHH
Q 000315 499 RYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPA---KAEENFLILDQLKDANVWK-ILMNLLDS-NTSFDQAFTGRD 573 (1678)
Q Consensus 499 ~~l~l~~~~~~~d~~ei~~kl~~~i~~Ls~~fPDp~---Ka~~~L~kf~klnD~Ri~k-LLk~~idp-~td~~tv~~a~k 573 (1678)
..+...-.-.+-|-.|++.|....|++. .|-..|-+|-.=.|.++.+ .|..++-. +.+...+..=+.
T Consensus 282 --------ntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~ 353 (866)
T KOG1062|consen 282 --------NTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRS 353 (866)
T ss_pred --------cccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHH
Confidence 0011111122234556666666666654 3555566665445666544 33333322 344444444455
Q ss_pred HHHHHhcCCCc-hH-HHHHHHHHhhhccccChhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccH-HHH
Q 000315 574 DLLKILGAKHR-LY-DFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE-EEL 650 (1678)
Q Consensus 574 ELlkkL~~k~~-~~-e~l~~Ll~R~S~lifNks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v-~~L 650 (1678)
-++-.|.+.-+ +. .++. .++.++|.+||..+++++ |..+-.. ++-|++.. ..+
T Consensus 354 tIleCL~DpD~SIkrralE-----Ls~~lvn~~Nv~~mv~eL------------------l~fL~~~-d~~~k~~~as~I 409 (866)
T KOG1062|consen 354 TILECLKDPDVSIKRRALE-----LSYALVNESNVRVMVKEL------------------LEFLESS-DEDFKADIASKI 409 (866)
T ss_pred HHHHHhcCCcHHHHHHHHH-----HHHHHhccccHHHHHHHH------------------HHHHHhc-cHHHHHHHHHHH
Confidence 56666655421 11 1121 356678888888877743 3333333 44455443 333
Q ss_pred HHHHhhccc---cchhhHHHHHHHhhcchHhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhc
Q 000315 651 VNLLKEENE---IIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAIT 714 (1678)
Q Consensus 651 i~lL~~~~~---~~~e~aLkiLak~~k~i~e~~~~~~s~l~~~L~~lal~GtpkqAKyAVr~Laa~~ 714 (1678)
+.+.+.=.| .-...++++|..+|.++++. ...-|.++.-+|.+..=+|+++-|.+..
T Consensus 410 ~~laEkfaP~k~W~idtml~Vl~~aG~~V~~d-------v~~nll~LIa~~~~e~~~y~~~rLy~a~ 469 (866)
T KOG1062|consen 410 AELAEKFAPDKRWHIDTMLKVLKTAGDFVNDD-------VVNNLLRLIANAFQELHEYAVLRLYLAL 469 (866)
T ss_pred HHHHHhcCCcchhHHHHHHHHHHhcccccchh-------hHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 333333122 33466788888888776544 3344666777787777778888876433
No 15
>PRK09687 putative lyase; Provisional
Probab=97.36 E-value=0.0015 Score=77.40 Aligned_cols=129 Identities=16% Similarity=0.069 Sum_probs=99.6
Q ss_pred hhhhhhccc-ccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCCh
Q 000315 262 GVVPYLTGE-LLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADA 340 (1678)
Q Consensus 262 ~ViP~Le~E-L~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~ 340 (1678)
.++|.|..- +...+..+|..|+..||.+-.. +. ..-+.+...+..-..|.++.||...+...+.| . .
T Consensus 90 ~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~-~~---~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----~----~ 157 (280)
T PRK09687 90 NVFNILNNLALEDKSACVRASAINATGHRCKK-NP---LYSPKIVEQSQITAFDKSTNVRFAVAFALSVI----N----D 157 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhccccc-cc---ccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc----C----C
Confidence 455666655 4567899999999999998432 21 11244556677778899999999999888642 1 1
Q ss_pred HHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000315 341 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1678)
Q Consensus 341 ~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~L 407 (1678)
.+.+..|...|.|+|..||..|+.+++.+.. -+...+..|...+.|....||..|+.+||++
T Consensus 158 ~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~-----~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 EAAIPLLINLLKDPNGDVRNWAAFALNSNKY-----DNPDIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 3688999999999999999999999987622 2446677788889999999999999999984
No 16
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.15 E-value=0.05 Score=74.32 Aligned_cols=262 Identities=16% Similarity=0.145 Sum_probs=142.4
Q ss_pred hhhcCCCcchHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhcccC
Q 000315 63 VLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDL 142 (1678)
Q Consensus 63 ~LL~HkD~~Vr~~vAcCLadIlRI~APdaPytd~qLkdIF~l~v~qf~~L~d~~~p~f~~~~~lLe~lA~vks~vl~~DL 142 (1678)
.+|++.|.+||..++-.|.++- | ..++..++..| .|++.. -+...++.|.++ .-.+
T Consensus 628 ~~L~D~d~~VR~~Av~~L~~~~----~---------~~~~~~L~~aL---~D~d~~---VR~~Aa~aL~~l-----~~~~ 683 (897)
T PRK13800 628 PYLADPDPGVRRTAVAVLTETT----P---------PGFGPALVAAL---GDGAAA---VRRAAAEGLREL-----VEVL 683 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhhhc----c---------hhHHHHHHHHH---cCCCHH---HHHHHHHHHHHH-----Hhcc
Confidence 4568999999999999999874 1 23455555444 454332 233555555443 1123
Q ss_pred CchHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHhhh
Q 000315 143 ECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKND----TARRLAMNVIEQCAG 218 (1678)
Q Consensus 143 ~~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~vp~~lLd~IL~~l~~~k~~----~a~~LA~~vi~~~~d 218 (1678)
++...+..+++. ....|.....+.|..+-.. . ...++..+...... +++.|+. . +
T Consensus 684 ~~~~~L~~~L~~--------~d~~VR~~A~~aL~~~~~~--~-----~~~l~~~L~D~d~~VR~~Av~aL~~-----~-~ 742 (897)
T PRK13800 684 PPAPALRDHLGS--------PDPVVRAAALDVLRALRAG--D-----AALFAAALGDPDHRVRIEAVRALVS-----V-D 742 (897)
T ss_pred CchHHHHHHhcC--------CCHHHHHHHHHHHHhhccC--C-----HHHHHHHhcCCCHHHHHHHHHHHhc-----c-c
Confidence 344444444322 2336776666666664311 1 12344444322211 2233332 0 1
Q ss_pred hhHHHHHHHHHHhhcCCCCCCCCcch--HHHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCC
Q 000315 219 KLEAGIKQFLVSSMSGDSRPGHSHID--YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA 296 (1678)
Q Consensus 219 kL~~~I~q~f~~il~~d~~~~~~~~~--~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~ 296 (1678)
.. +.+..+ +..+ +..++ +-.-|-.+..-.+.. +|.|..-|..++..+|..|+..||.+-..+
T Consensus 743 ~~-~~l~~~----l~D~----~~~VR~~aa~aL~~~~~~~~~~----~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~--- 806 (897)
T PRK13800 743 DV-ESVAGA----ATDE----NREVRIAVAKGLATLGAGGAPA----GDAVRALTGDPDPLVRAAALAALAELGCPP--- 806 (897)
T ss_pred Cc-HHHHHH----hcCC----CHHHHHHHHHHHHHhccccchh----HHHHHHHhcCCCHHHHHHHHHHHHhcCCcc---
Confidence 11 122211 1111 11111 112233333222211 344445566678888888888888773321
Q ss_pred chhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCC
Q 000315 297 NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS 376 (1678)
Q Consensus 297 ~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~ 376 (1678)
.+....+.-..|.++.||...+++...+ +. .+.+..|...|.|++..||.+|+.++..+ .
T Consensus 807 ------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l----~~----~~a~~~L~~~L~D~~~~VR~~A~~aL~~~------~ 866 (897)
T PRK13800 807 ------DDVAAATAALRASAWQVRQGAARALAGA----AA----DVAVPALVEALTDPHLDVRKAAVLALTRW------P 866 (897)
T ss_pred ------hhHHHHHHHhcCCChHHHHHHHHHHHhc----cc----cchHHHHHHHhcCCCHHHHHHHHHHHhcc------C
Confidence 1112233445677888888888887641 11 24667788888888888888888887664 2
Q ss_pred CCHHHHHHHHHhhccCChhHHHHHHHHHH
Q 000315 377 IPVETVKLVAERLRDKSVLVKRYTMERLA 405 (1678)
Q Consensus 377 V~~elL~~LaeR~RDKK~~VR~eAm~~La 405 (1678)
.+......|...+.|....||++|...|.
T Consensus 867 ~~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 867 GDPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 34556667777888888888888888775
No 17
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.11 E-value=2.4 Score=57.69 Aligned_cols=437 Identities=19% Similarity=0.189 Sum_probs=216.1
Q ss_pred HHHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCC--CCC---chhhcHHHHHHHHhhhcCCChhH
Q 000315 245 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP--GSA---NNEQFHSVFSEFLKRLTDRIVAV 319 (1678)
Q Consensus 245 ~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~--~s~---~a~~y~~~w~~fL~R~~D~s~~V 319 (1678)
.-..+.+|-..+|.++..=+..|-.-|..+.-..|-..++.+|.|-..- +.+ ..++-++
T Consensus 295 v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~---------------- 358 (1251)
T KOG0414|consen 295 VGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRD---------------- 358 (1251)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHH----------------
Confidence 4568899999999999998888888899999999999999999987642 111 1111122
Q ss_pred HHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCH----HHHHHHHHhhccCChh
Q 000315 320 RMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV----ETVKLVAERLRDKSVL 395 (1678)
Q Consensus 320 R~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~----elL~~LaeR~RDKK~~ 395 (1678)
++++.|.+|+.|.-.-||..|.+++..+. ..+.+|. +++..++.|+-||..-
T Consensus 359 ----------------------~~le~l~erl~Dvsa~vRskVLqv~~~l~--~~~s~p~~~~~eV~~la~grl~DkSsl 414 (1251)
T KOG0414|consen 359 ----------------------ELLELLRERLLDVSAYVRSKVLQVFRRLF--QQHSIPLGSRTEVLELAIGRLEDKSSL 414 (1251)
T ss_pred ----------------------HHHHHHHHHhhcccHHHHHHHHHHHHHHH--HccCCCccHHHHHHHHHhcccccccHH
Confidence 24444445555555555555554443322 1222222 3445556666666666
Q ss_pred HHHHHHHHHHHHHHHH------------------hhhccC--CCcchhccccchHHHhhhhccCCCCchhHHHHhhccCc
Q 000315 396 VKRYTMERLADIFRGC------------------CLRNFN--GSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLF 455 (1678)
Q Consensus 396 VR~eAm~~La~LY~~~------------------~~~~~~--~~~~~~~~~wIPs~IL~~~Y~nd~~~~lVE~vL~e~Ll 455 (1678)
||+.||..+..+-..+ ....+. .+...-.=..+++--.. -|..-.. .++..=+.+--
T Consensus 415 VRk~Ai~Ll~~~L~~~Pfs~~~~~~~~~~~~E~~~~~~e~~~e~t~~l~~e~~~~~~s~-n~~~vi~--~~~~~~~~~~~ 491 (1251)
T KOG0414|consen 415 VRKNAIQLLSSLLDRHPFSSELRSDDLRAKLEKELQKLEEELESTEHLEEEEMTSNRSE-NVKGVIE--DAEKDSTTEKN 491 (1251)
T ss_pred HHHHHHHHHHHHHhcCCchhhhcchhhhhhHHHHHHhhhhhcccccccchhhccchhhh-hccccee--echhhhhhhcc
Confidence 6666666666654432 221110 00000000000000000 0000000 00000000001
Q ss_pred CCCCCHHH--HHHHHHHHHhcCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcCCCcHHHHHHHHHHHHHHHh
Q 000315 456 PTGFSVKD--RVRHWVRIFSGFDRI----EMKALEKILEQKQRLQQEMQRYLSLR-QMHQDGDAPEIQKKILFCFRVMSR 528 (1678)
Q Consensus 456 P~~~~~~~--R~~~ll~l~~~LD~~----~~kal~~il~~k~~l~~~~~~~l~l~-~~~~~~d~~ei~~kl~~~i~~Ls~ 528 (1678)
|....... ---.+..-....+.. ..+++.+++...-++...|.+-+... +..-++...+|+..|... .+|.
T Consensus 492 q~~ss~~~~~e~~~~~~~~~s~~~~~~i~q~~~~vq~l~d~~sf~~~ms~~~~ii~~ll~s~t~teV~E~Idfl--~~c~ 569 (1251)
T KOG0414|consen 492 QLESSDNKQEEHCLLENEVESVPAENEIMQLKALVQFLEDAISFSDEMSEAIPIISQLLFSKTTTEVKEAIDFL--VRCK 569 (1251)
T ss_pred ccccccccchhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH--HHHH
Confidence 11000000 000000000111111 11233333333333344444433331 222234556676655533 2345
Q ss_pred hcCCchHHHHHHHHHHhh---ccHHHHHHHHHH-------hcCCCCHHHHHHHHHHHHHHhcC-----CCchHHHHHHHH
Q 000315 529 SFAEPAKAEENFLILDQL---KDANVWKILMNL-------LDSNTSFDQAFTGRDDLLKILGA-----KHRLYDFLSTLS 593 (1678)
Q Consensus 529 ~fPDp~Ka~~~L~kf~kl---nD~Ri~kLLk~~-------idp~td~~tv~~a~kELlkkL~~-----k~~~~e~l~~Ll 593 (1678)
.| +..-|+.++++.-.| +|..++.++-.| .+++..-.+.....+-|++.+-+ .+++-+.+..|+
T Consensus 570 ~F-~I~gae~~irkMl~LVWskd~~i~e~v~~ayk~l~~~~~~n~~~~e~~~ia~NL~~l~~~~s~~d~~slE~vl~~lv 648 (1251)
T KOG0414|consen 570 QF-GIDGAEFGIRKMLPLVWSKDKEIREAVENAYKQLYFRPDGNSKASEASSIAQNLSKLLIDASIGDLTSLEEVLCELV 648 (1251)
T ss_pred Hh-CCCcHHHHHHHHhhhhhCCCccHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence 55 455566777776654 666666655555 33445544442233344444322 233333333333
Q ss_pred HhhhccccChhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccccchhhHHHHHHHhh
Q 000315 594 MKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAG 673 (1678)
Q Consensus 594 ~R~S~lifNks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v~~Li~lL~~~~~~~~e~aLkiLak~~ 673 (1678)
. --.|+...|..|.......+.+.......-++.+|-++|...|++-..+.+.|+++=-. .+.....+|..++.++
T Consensus 649 ~---~~~Id~~Vi~~Lw~~ftlq~~~~~~~q~~~sl~iL~M~s~s~~~Iv~~~~~~lv~iglg-~p~l~~~~L~~~s~i~ 724 (1251)
T KOG0414|consen 649 A---RGYIDAAVINKLWEIFTLQKKGTTNEQSRGSLIILGMASRSKPSIVLANLDLLVQIGLG-EPRLAVDVLARYSNIV 724 (1251)
T ss_pred h---CCCccHHHHHHHHHHHHHHhccCchhhhccceeehhhhhccChhhhhhhhHHHHHhccC-cHHHHHHHHHHHHHhh
Confidence 3 45678888888988764433332211223467899999999999999998887765333 3555566777776554
Q ss_pred c-chHh----h--h-hcccchHHHHHHHHhhcCCh-------HHHHHHHHHHHhhcCCCccchHHHHHHHHHHh
Q 000315 674 G-TIRE----Q--L-AATSSSVDLLLERLCLEGSR-------RQAKYAVHALAAITKDDGLKSLSVLYKRLVDM 732 (1678)
Q Consensus 674 k-~i~e----~--~-~~~~s~l~~~L~~lal~Gtp-------kqAKyAVr~Laa~~~~~~~~~~~~L~~~L~~~ 732 (1678)
- .+.+ . + .+....+...|+.+-..|-+ ..|-.|+.+|..+....+. ....|++.+.++
T Consensus 725 ~~r~~~~~~~r~~f~~~~~~~L~k~L~~l~~~~~~~~d~~~~~~~e~ais~Iy~is~~Pe~-la~~li~~~~~~ 797 (1251)
T KOG0414|consen 725 DPRKLEDAYSRPKFNLEQEEVLFKILEKLLFFEFMKADDDWFGVAEVAISAIYSISMLPEV-LATQLIRKLLKQ 797 (1251)
T ss_pred cccccchhhccccccCchHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHhcChHH-HHHHHHHHHHHH
Confidence 1 1110 0 0 12234677778777776421 5667788888888775542 223345444444
No 18
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.99 E-value=3 Score=56.82 Aligned_cols=311 Identities=14% Similarity=0.136 Sum_probs=174.6
Q ss_pred hhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhccc
Q 000315 62 PVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLD 141 (1678)
Q Consensus 62 ~~LL~HkD~~Vr~~vAcCLadIlRI~APdaPytd~qLkdIF~l~v~qf~~L~d~~~p~f~~~~~lLe~lA~vks~vl~~D 141 (1678)
..+++-.-.-||--.|--+++|.|---|+ +--++.+|++.+.. +++.+.-.-.++||.++.++..-. +
T Consensus 86 ~~~~~E~~~~vr~k~~dviAeia~~~l~e------~WPell~~L~q~~~---S~~~~~rE~al~il~s~~~~~~~~---~ 153 (1075)
T KOG2171|consen 86 EIIQSETEPSVRHKLADVIAEIARNDLPE------KWPELLQFLFQSTK---SPNPSLRESALLILSSLPETFGNT---L 153 (1075)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHhcccc------chHHHHHHHHHHhc---CCCcchhHHHHHHHHhhhhhhccc---c
Confidence 34555666778999999999999987777 56678888888764 344444455688888887753221 1
Q ss_pred CCchHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccc--c-cc-------HHHHHHHHHHhcCCCcH----HHHH
Q 000315 142 LECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESE--D-IQ-------EDLLVILLSALGRNKND----TARR 207 (1678)
Q Consensus 142 L~~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese--~-vp-------~~lLd~IL~~l~~~k~~----~a~~ 207 (1678)
-+--+-+..||...+.- ++++ |...-..-++.++...+ . .- |.++.++=. +.+.... .++.
T Consensus 154 ~~~~~~l~~lf~q~~~d--~s~~--vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~-~i~~~d~~~a~~~l~ 228 (1075)
T KOG2171|consen 154 QPHLDDLLRLFSQTMTD--PSSP--VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQE-VIQDGDDDAAKSALE 228 (1075)
T ss_pred chhHHHHHHHHHHhccC--Ccch--HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHh-hhhccchHHHHHHHH
Confidence 12234666777766652 2333 66666666777666654 1 11 111111111 1122222 2233
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhh--cCCCCCCCCcc--hHHHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHH
Q 000315 208 LAMNVIEQCAGKLEAGIKQFLVSSM--SGDSRPGHSHI--DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAV 283 (1678)
Q Consensus 208 LA~~vi~~~~dkL~~~I~q~f~~il--~~d~~~~~~~~--~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At 283 (1678)
.--++...+..-+.|++.+.+.-++ .++ ...+... .+-++|.-+-+++|.++----| +-+ .+..
T Consensus 229 ~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n-~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~-~~~----------~lv~ 296 (1075)
T KOG2171|consen 229 ALIELLESEPKLLRPHLSQIIQFSLEIAKN-KELENSIRHLALEFLVSLSEYAPAMCKKLAL-LGH----------TLVP 296 (1075)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHhhc-ccccHHHHHHHHHHHHHHHHhhHHHhhhchh-hhc----------cHHH
Confidence 3334444444444444443332211 121 1111222 3667888888887776543222 111 1112
Q ss_pred HHHHHhhcCCCCCchhhcHHHHHHHHh-hhcCCCh-hHHHHHHHHhHHHHhcCCC-CCChHHHHHHHHhhhCCChhHHHH
Q 000315 284 GLVGDLFAVPGSANNEQFHSVFSEFLK-RLTDRIV-AVRMSVLEHVKSCLLTDPS-RADAPQILTALCDRLLDFDENVRK 360 (1678)
Q Consensus 284 ~llG~mfs~~~s~~a~~y~~~w~~fL~-R~~D~s~-~VR~~~ve~~~~iL~~~p~-~~~~~eii~~L~~rL~D~DEkVR~ 360 (1678)
.++..|--..+ + .+|++ --.|.+. +.=.-+.+.+-+.|..+.. .-....+.+++...|.-++++=|.
T Consensus 297 ~~l~~mte~~~-D---------~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~ 366 (1075)
T KOG2171|consen 297 VLLAMMTEEED-D---------DEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERH 366 (1075)
T ss_pred HHHHhcCCccc-c---------hhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHH
Confidence 22222221111 1 45554 1112111 1122233444455555533 234567889999999999999999
Q ss_pred HHHHHHHHhhhhhcCCC---CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHH
Q 000315 361 QVVAVICDVACHALNSI---PVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1678)
Q Consensus 361 aaV~ai~~la~~~l~~V---~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~ 411 (1678)
|++.+|+.++.-..+.+ =.+++..+..-+.|-++.||-.|++.+|++=-..
T Consensus 367 AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl 420 (1075)
T KOG2171|consen 367 AALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDL 420 (1075)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhh
Confidence 99999998875333322 2346778889999999999999999999986654
No 19
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=96.99 E-value=0.0014 Score=58.59 Aligned_cols=44 Identities=20% Similarity=0.392 Sum_probs=40.0
Q ss_pred ccCceEEEecCCCCceEEEEEEeecCCCCeeEEEccC-CcceeeecC
Q 000315 1379 LIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDD-EDVEVLRLD 1424 (1678)
Q Consensus 1379 lvG~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdD-gd~E~l~L~ 1424 (1678)
-+|..|.+.| .|..||.|+|+.+++. +...|.|.| |..+++...
T Consensus 4 ~~G~~~~a~~-~d~~wyra~I~~~~~~-~~~~V~f~D~G~~~~v~~~ 48 (57)
T smart00333 4 KVGDKVAARW-EDGEWYRARIIKVDGE-QLYEVFFIDYGNEEVVPPS 48 (57)
T ss_pred CCCCEEEEEe-CCCCEEEEEEEEECCC-CEEEEEEECCCccEEEeHH
Confidence 4899999999 9999999999999988 889999987 999988754
No 20
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.91 E-value=0.031 Score=61.89 Aligned_cols=94 Identities=15% Similarity=0.161 Sum_probs=84.7
Q ss_pred ChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChh
Q 000315 316 IVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVL 395 (1678)
Q Consensus 316 s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~ 395 (1678)
+|.||.-++-..+++...+|. .....++.+..+|.|+++.||..|+.++..+....+-.+...++..+...+.|..+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~ 78 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPE 78 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHH
Confidence 478999999999999998885 345788899999999999999999999999998888888888878888899999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 000315 396 VKRYTMERLADIFRGC 411 (1678)
Q Consensus 396 VR~eAm~~La~LY~~~ 411 (1678)
||..|...+..+....
T Consensus 79 Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 79 IRSLARSFFSELLKKR 94 (178)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998874
No 21
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.80 E-value=3.1 Score=54.06 Aligned_cols=160 Identities=22% Similarity=0.290 Sum_probs=107.9
Q ss_pred hhhhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCC
Q 000315 217 AGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA 296 (1678)
Q Consensus 217 ~dkL~~~I~q~f~~il~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~ 296 (1678)
++++-..+..|++++-.-+. ..+ ++.+.+-+|=--+.+.+-.+|-...++|..+....+.-
T Consensus 59 ~dRIl~fla~fv~sl~q~d~-----e~D--------------lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~ei 119 (892)
T KOG2025|consen 59 PDRILSFLARFVESLPQLDK-----EED--------------LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEI 119 (892)
T ss_pred HHHHHHHHHHHHHhhhccCc-----hhh--------------HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccccc
Confidence 46666777888877532210 011 22222223333345789999999999999988743211
Q ss_pred chhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhh-CCChhHHHHHHHHHHHHhhhhhcC
Q 000315 297 NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRL-LDFDENVRKQVVAVICDVACHALN 375 (1678)
Q Consensus 297 ~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL-~D~DEkVR~aaV~ai~~la~~~l~ 375 (1678)
=-.-|.-+-...+.|..|+.|.||++.|.+... +.-.|. ++.-.+...|..-+ +||.+.||.+|.-.|
T Consensus 120 dd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsr-lQ~d~~-dee~~v~n~l~~liqnDpS~EVRRaaLsnI--------- 188 (892)
T KOG2025|consen 120 DDDVFNKLNEKLLIRLKDREPNVRIQAVLALSR-LQGDPK-DEECPVVNLLKDLIQNDPSDEVRRAALSNI--------- 188 (892)
T ss_pred CHHHHHHHHHHHHHHHhccCchHHHHHHHHHHH-HhcCCC-CCcccHHHHHHHHHhcCCcHHHHHHHHHhh---------
Confidence 122344555588999999999999999999876 332332 33346666666544 899999999976666
Q ss_pred CCCHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 000315 376 SIPVETVKLVAERLRDKSVLVKRYTMERLAD 406 (1678)
Q Consensus 376 ~V~~elL~~LaeR~RDKK~~VR~eAm~~La~ 406 (1678)
.++..++-.+.+|.||=+..+|+-+-.++..
T Consensus 189 ~vdnsTlp~IveRarDV~~anRrlvY~r~lp 219 (892)
T KOG2025|consen 189 SVDNSTLPCIVERARDVSGANRRLVYERCLP 219 (892)
T ss_pred ccCcccchhHHHHhhhhhHHHHHHHHHHhhh
Confidence 4566777788999999999999976554443
No 22
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=2.6 Score=53.54 Aligned_cols=430 Identities=15% Similarity=0.167 Sum_probs=232.0
Q ss_pred HHHHHHHHHh-hhhhHHHHHHHHHHhhcCCCC-CCCCcc-----hHHHHHHHHHhhCchhhhhhhhhhcccccCCChHHH
Q 000315 207 RLAMNVIEQC-AGKLEAGIKQFLVSSMSGDSR-PGHSHI-----DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTR 279 (1678)
Q Consensus 207 ~LA~~vi~~~-~dkL~~~I~q~f~~il~~d~~-~~~~~~-----~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~R 279 (1678)
++.+++++++ .+++...|.+...+.++.... ....++ -++-|=.+--.+.-.++.+|++. +...|..+|
T Consensus 26 k~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~c----f~D~d~~vR 101 (675)
T KOG0212|consen 26 KLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNC----FSDQDSQVR 101 (675)
T ss_pred HHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHh----ccCccceee
Confidence 3444444333 477777777777776653321 111111 12222222222334445555555 444788999
Q ss_pred HHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHH---HHHhHHHHhcCCCCCChHHHHHHHHhhhCCChh
Q 000315 280 LKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSV---LEHVKSCLLTDPSRADAPQILTALCDRLLDFDE 356 (1678)
Q Consensus 280 l~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~---ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DE 356 (1678)
--|.+.+-.+-..-..++..-++.+|....+=+.|.+..||-.. -...++|.......-...+++.-|.+|+.+.+.
T Consensus 102 yyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~ 181 (675)
T KOG0212|consen 102 YYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINP 181 (675)
T ss_pred eHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCc
Confidence 99999887776544457788889999999999999999999652 233444554433223356899999999999999
Q ss_pred HHHHHHHHHHHHhhhh-hcCCC--CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccC-C-----Cc------c
Q 000315 357 NVRKQVVAVICDVACH-ALNSI--PVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFN-G-----SI------N 421 (1678)
Q Consensus 357 kVR~aaV~ai~~la~~-~l~~V--~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~-~-----~~------~ 421 (1678)
.+|..+|.-+.-+... .++-+ -.+++.-|..=+-|-...||..|=..|+.+-+....+.+. + +. .
T Consensus 182 ~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~s 261 (675)
T KOG0212|consen 182 MTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQS 261 (675)
T ss_pred hHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccC
Confidence 9999999888665431 11111 1244555566678999999999999999998876543221 0 00 0
Q ss_pred ------hhccccchHHHhhhhccCCCCch-hHHHHhhccCcCCCCCHHHH----HHHHHH--HHhcCCHHHHH---HHHH
Q 000315 422 ------QNEFEWIPGKILRCLYDKDFGSD-TIESVLCGSLFPTGFSVKDR----VRHWVR--IFSGFDRIEMK---ALEK 485 (1678)
Q Consensus 422 ------~~~~~wIPs~IL~~~Y~nd~~~~-lVE~vL~e~LlP~~~~~~~R----~~~ll~--l~~~LD~~~~k---al~~ 485 (1678)
...+-||-.- .++.....- ..-. +++.++|.-.+.+.. ....+. +.+-++....+ .+..
T Consensus 262 s~~~iq~~al~Wi~ef----V~i~g~~~l~~~s~-il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ 336 (675)
T KOG0212|consen 262 SEPEIQLKALTWIQEF----VKIPGRDLLLYLSG-ILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGS 336 (675)
T ss_pred CcHHHHHHHHHHHHHH----hcCCCcchhhhhhh-hhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHH
Confidence 0113343111 112111111 1222 245678875444332 222222 11111211111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHH---hhcCCchHHHHH--HHHH-HhhccH------HHHH
Q 000315 486 ILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMS---RSFAEPAKAEEN--FLIL-DQLKDA------NVWK 553 (1678)
Q Consensus 486 il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kl~~~i~~Ls---~~fPDp~Ka~~~--L~kf-~klnD~------Ri~k 553 (1678)
+-..+++|+.- +. +.+++. +.+||. ..+|...-...+ +..+ ..|-|+ +..-
T Consensus 337 -------ii~vl~~~l~~-------~~--~~tri~-~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~ 399 (675)
T KOG0212|consen 337 -------IIEVLTKYLSD-------DR--EETRIA-VLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALS 399 (675)
T ss_pred -------HHHHHHHHhhc-------ch--HHHHHH-HHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHH
Confidence 12233333331 21 222333 345553 445543332111 2211 223222 1222
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhccccChhHHHHHHHHHHhhcccchhhhHHHHHHHHH
Q 000315 554 ILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILG 633 (1678)
Q Consensus 554 LLk~~idp~td~~tv~~a~kELlkkL~~k~~~~e~l~~Ll~R~S~lifNks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~ 633 (1678)
++..++....++ ..++....|+.+..+..-+.+.--.|..|.-++..|.++|=.-+..+-.. ..|-.+++..-+.|+
T Consensus 400 lla~i~~s~~~~-~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~ILe~--e~nl~FAstMV~~Ln 476 (675)
T KOG0212|consen 400 LLASICSSSNSP-NLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADILER--EENLKFASTMVQALN 476 (675)
T ss_pred HHHHHhcCcccc-cHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHHhc--cccchHHHHHHHHHH
Confidence 333333332222 22344445555544444455555668889999999999997666544332 334456777789999
Q ss_pred HHHhhCCcCccccHHHHHHHHhh-ccccchhhHHHHHHH
Q 000315 634 ILARFSPLLLGGTEEELVNLLKE-ENEIIKEGILHVLAK 671 (1678)
Q Consensus 634 ~IS~~~P~lFk~~v~~Li~lL~~-~~~~~~e~aLkiLak 671 (1678)
.|--+.|++| +|-+.|++ .++. .......|++
T Consensus 477 ~iLlTStELf-----~LR~~Lk~lsn~e-s~~lF~cLy~ 509 (675)
T KOG0212|consen 477 TILLTSTELF-----QLRNKLKDLSNEE-SQNLFCCLYR 509 (675)
T ss_pred hhhcccHHHH-----HHHHHHHhccChh-hhHHHHHHHH
Confidence 9999999999 67777765 2222 1234555653
No 23
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=96.76 E-value=0.0028 Score=54.70 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=38.6
Q ss_pred CceEEEecCCCCceEEEEEEeecCCCCeeEEEccC-CcceeeecC
Q 000315 1381 GYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDD-EDVEVLRLD 1424 (1678)
Q Consensus 1381 G~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdD-gd~E~l~L~ 1424 (1678)
|..|-+.|+.|..||.|+|...++ .+.-.|.|.| |..|.+.+.
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~-~~~~~V~f~DyG~~~~v~~~ 44 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILS-DGKVEVFFVDYGNTEVVPLS 44 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECC-CCcEEEEEEcCCCcEEEeHH
Confidence 678999999999999999999998 7888999977 999988764
No 24
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.73 E-value=1.6 Score=57.90 Aligned_cols=474 Identities=17% Similarity=0.169 Sum_probs=245.2
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhhcC--C-CCCCCCcchH-HHHHHHHHhhCchhhhhhhhhhcccccCC--C--
Q 000315 204 TARRLAMNVIEQCAGKLEAGIKQFLVSSMSG--D-SRPGHSHIDY-HEVIYDVYRCSPQILSGVVPYLTGELLTD--Q-- 275 (1678)
Q Consensus 204 ~a~~LA~~vi~~~~dkL~~~I~q~f~~il~~--d-~~~~~~~~~~-h~Li~eL~~~~P~lL~~ViP~Le~EL~se--d-- 275 (1678)
.++.+-..+++...+-|..++-..+..+++. | +.+++..+.+ --+..-|-.+.|....+-+|-|..-+.+- |
T Consensus 454 ~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~f 533 (1233)
T KOG1824|consen 454 GCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPF 533 (1233)
T ss_pred hHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCch
Confidence 6678888888888877777776655555542 2 1112222222 23344455667777776666554433211 1
Q ss_pred hHHHHHHHHHHHHhhcC-----C--CCCchhhcHHHHHHHHhhh--cCCChhHHHHHHHHhHHHHhcCCC--CCChHHHH
Q 000315 276 LDTRLKAVGLVGDLFAV-----P--GSANNEQFHSVFSEFLKRL--TDRIVAVRMSVLEHVKSCLLTDPS--RADAPQIL 344 (1678)
Q Consensus 276 ~~~Rl~At~llG~mfs~-----~--~s~~a~~y~~~w~~fL~R~--~D~s~~VR~~~ve~~~~iL~~~p~--~~~~~eii 344 (1678)
-.+--.|..+.+++... + +.++......+|.+-+.|+ +|.+-+||...+.+.++++.+-.+ +.+.+-++
T Consensus 534 yKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L 613 (1233)
T KOG1824|consen 534 YKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTL 613 (1233)
T ss_pred HhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 22222333333333321 1 3455566678888888876 799999999999999998887433 24445678
Q ss_pred HHHHhhhCCChhHHHHHHHHHHHHhhhhhcC----CCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCc
Q 000315 345 TALCDRLLDFDENVRKQVVAVICDVACHALN----SIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSI 420 (1678)
Q Consensus 345 ~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~----~V~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~~~~ 420 (1678)
..|++||. .|--|+.||+|+|.++...++ .+-.+++..++.=+|--....|.+++..+-+|-..|...+. ..
T Consensus 614 ~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~--~~ 689 (1233)
T KOG1824|consen 614 PILLERLG--NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIP--AE 689 (1233)
T ss_pred HHHHHHHh--chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--HH
Confidence 88999985 578899999999999875543 33446777777777766667888877777777776632211 11
Q ss_pred c-hhccccchHHHhhhhccCCCCchhHHHHhhccCc--CCCCCHHHHH---HHHHHHHh--cCCHHHHHHHHHHHHHHHH
Q 000315 421 N-QNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLF--PTGFSVKDRV---RHWVRIFS--GFDRIEMKALEKILEQKQR 492 (1678)
Q Consensus 421 ~-~~~~~wIPs~IL~~~Y~nd~~~~lVE~vL~e~Ll--P~~~~~~~R~---~~ll~l~~--~LD~~~~kal~~il~~k~~ 492 (1678)
. ..-+.-||+-|- ..|.+.-..--.+..+++ |...-.+-+- ..++.+.. .+-..+..++..++..-..
T Consensus 690 ~~e~vL~el~~Lis----esdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~ 765 (1233)
T KOG1824|consen 690 LLEAVLVELPPLIS----ESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVI 765 (1233)
T ss_pred HHHHHHHHhhhhhh----HHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHh
Confidence 1 112334443332 223221111111111221 1110011111 11111111 1112122222222111111
Q ss_pred HHHHHHHHHHHHhhhc--------CCCcHHHHHHHHHHHHHHHhhcCCchHH--HHHHHHHH--hhccH-HHHHHHHHH-
Q 000315 493 LQQEMQRYLSLRQMHQ--------DGDAPEIQKKILFCFRVMSRSFAEPAKA--EENFLILD--QLKDA-NVWKILMNL- 558 (1678)
Q Consensus 493 l~~~~~~~l~l~~~~~--------~~d~~ei~~kl~~~i~~Ls~~fPDp~Ka--~~~L~kf~--klnD~-Ri~kLLk~~- 558 (1678)
-+..-..|..+....+ ++-....--.|.+|++.|+..+|+-.++ ..-.+-|. +.+|. ++|-+|..=
T Consensus 766 t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGE 845 (1233)
T KOG1824|consen 766 TKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGE 845 (1233)
T ss_pred cCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhh
Confidence 0111011222211111 1112222334778889999999965554 33344444 34443 444444321
Q ss_pred hc------CCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhccccC--hhHHHHHHHHHHhhcccchhhhHHHHHH
Q 000315 559 LD------SNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFN--KEHVKEILLEVAAQKSSANAQFMQSCMD 630 (1678)
Q Consensus 559 id------p~td~~tv~~a~kELlkkL~~k~~~~e~l~~Ll~R~S~lifN--ks~V~~LL~~v~~~~~~~~~~~~~~a~e 630 (1678)
++ |.-.|.+ -++.-++. |..|....-.|-...+..+ ...+|.|+..+... .. .++ ---|-
T Consensus 846 lgr~~~~s~~~e~~~------~iieaf~s--p~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sq--pk-~Qy-LLLhS 913 (1233)
T KOG1824|consen 846 LGRRKDLSPQNELKD------TIIEAFNS--PSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQ--PK-RQY-LLLHS 913 (1233)
T ss_pred hccCCCCCcchhhHH------HHHHHcCC--ChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcc--hH-hHH-HHHHH
Confidence 11 1112211 12222222 2234444434433334331 23567777765432 11 111 12356
Q ss_pred HHHHHHhhCCcCccccHHHHHHHHhhccccchhhHHHHHHHhhcchHhhhhcccchHHHHHHHHhhcCCh
Q 000315 631 ILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSR 700 (1678)
Q Consensus 631 LL~~IS~~~P~lFk~~v~~Li~lL~~~~~~~~e~aLkiLak~~k~i~e~~~~~~s~l~~~L~~lal~Gtp 700 (1678)
|...|+...+..|+..++.+-.+|...-+..-+++=-+++.|-|.+- -...+++.+.|+.+-..|.|
T Consensus 914 lkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~---l~epesLlpkL~~~~~S~a~ 980 (1233)
T KOG1824|consen 914 LKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLV---LIEPESLLPKLKLLLRSEAS 980 (1233)
T ss_pred HHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHH---hCChHHHHHHHHHHhcCCCc
Confidence 77789999999999999999999987544445566556666644422 12245789999888777765
No 25
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=96.72 E-value=0.0026 Score=57.94 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=33.7
Q ss_pred ccCceEEEecCCCCceEEEEEEeecCCCCeeEEEccC
Q 000315 1379 LIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDD 1415 (1678)
Q Consensus 1379 lvG~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdD 1415 (1678)
-+|..|.+||+.+..||.|+|+.+++ .+++.|.|++
T Consensus 4 ~~G~~Ve~~~~~~~~W~~a~V~~~~~-~~~~~V~~~~ 39 (61)
T smart00743 4 KKGDRVEVFSKEEDSWWEAVVTKVLG-DGKYLVRYLT 39 (61)
T ss_pred CCCCEEEEEECCCCEEEEEEEEEECC-CCEEEEEECC
Confidence 48999999999999999999999998 6789999987
No 26
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.72 E-value=2.4 Score=55.49 Aligned_cols=161 Identities=14% Similarity=0.048 Sum_probs=116.6
Q ss_pred HHHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHH
Q 000315 245 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVL 324 (1678)
Q Consensus 245 ~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~v 324 (1678)
.|--+.+-.+-.|++-+--|-.+.--|...|..+|--|.+++..|= +..--|=...+--+-..|.+|-||-...
T Consensus 91 VyvYLlrYAEeqpdLALLSIntfQk~L~DpN~LiRasALRvlSsIR------vp~IaPI~llAIk~~~~D~s~yVRk~AA 164 (968)
T KOG1060|consen 91 VYVYLLRYAEEQPDLALLSINTFQKALKDPNQLIRASALRVLSSIR------VPMIAPIMLLAIKKAVTDPSPYVRKTAA 164 (968)
T ss_pred HHHHHHHHhhcCCCceeeeHHHHHhhhcCCcHHHHHHHHHHHHhcc------hhhHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 3544555566789988888889999999999999999999987542 3334455666777789999999999999
Q ss_pred HHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHH
Q 000315 325 EHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERL 404 (1678)
Q Consensus 325 e~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~L 404 (1678)
-+++.+..-.|+. -.+|++.+...|.|.+..|=-+||.++-++....++.|-.. .+.+..-+.|=.-==....|..|
T Consensus 165 ~AIpKLYsLd~e~--k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHkn-yrklC~ll~dvdeWgQvvlI~mL 241 (968)
T KOG1060|consen 165 HAIPKLYSLDPEQ--KDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKN-YRKLCRLLPDVDEWGQVVLINML 241 (968)
T ss_pred HhhHHHhcCChhh--HHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHH-HHHHHhhccchhhhhHHHHHHHH
Confidence 9999988776653 34899999999999999999999999988877777765443 22223333332211133456666
Q ss_pred HHHHHHHhhh
Q 000315 405 ADIFRGCCLR 414 (1678)
Q Consensus 405 a~LY~~~~~~ 414 (1678)
.+.-+.+..+
T Consensus 242 ~RYAR~~l~~ 251 (968)
T KOG1060|consen 242 TRYARHQLPD 251 (968)
T ss_pred HHHHHhcCCC
Confidence 6655554443
No 27
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.59 E-value=0.013 Score=56.35 Aligned_cols=83 Identities=23% Similarity=0.304 Sum_probs=66.3
Q ss_pred HHhhh-cCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHH
Q 000315 308 FLKRL-TDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVA 386 (1678)
Q Consensus 308 fL~R~-~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~La 386 (1678)
++... +|.++.||...+...+.+ ...++++.|...+.|+|..||.+|+.+++.+. +.+.+..|.
T Consensus 4 L~~~l~~~~~~~vr~~a~~~L~~~--------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-------~~~~~~~L~ 68 (88)
T PF13646_consen 4 LLQLLQNDPDPQVRAEAARALGEL--------GDPEAIPALIELLKDEDPMVRRAAARALGRIG-------DPEAIPALI 68 (88)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHCC--------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-------HHHTHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHc--------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------CHHHHHHHH
Confidence 44555 799999999988887731 23588999999999999999999999998764 345677778
Q ss_pred Hhhcc-CChhHHHHHHHHHH
Q 000315 387 ERLRD-KSVLVKRYTMERLA 405 (1678)
Q Consensus 387 eR~RD-KK~~VR~eAm~~La 405 (1678)
+.+.| ....||..|+..||
T Consensus 69 ~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 69 KLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTC-SSHHHHHHHHHHHH
T ss_pred HHHcCCCcHHHHHHHHhhcC
Confidence 87777 55678999999986
No 28
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=0.38 Score=61.53 Aligned_cols=100 Identities=26% Similarity=0.193 Sum_probs=80.4
Q ss_pred hhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhc-HHHHHHHHhhhc-----CCChhHHHHHHHHhHHHHhcCCCCCC
Q 000315 266 YLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQF-HSVFSEFLKRLT-----DRIVAVRMSVLEHVKSCLLTDPSRAD 339 (1678)
Q Consensus 266 ~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y-~~~w~~fL~R~~-----D~s~~VR~~~ve~~~~iL~~~p~~~~ 339 (1678)
+|+.-|..+-+.+|.-||..|.++|+. |+.-- |.+-...|++.. |.+++||++.++..+.++.+-.++..
T Consensus 224 ~l~~LL~d~~p~VRS~a~~gv~k~~s~----fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~ 299 (1005)
T KOG1949|consen 224 ELYSLLEDPYPMVRSTAILGVCKITSK----FWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPL 299 (1005)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHH----HHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhH
Confidence 445556778899999999999999985 55544 345667887765 57889999999999998876445555
Q ss_pred hHHHHHHHHhhhCCChhHHHHHHHHHHHHh
Q 000315 340 APQILTALCDRLLDFDENVRKQVVAVICDV 369 (1678)
Q Consensus 340 ~~eii~~L~~rL~D~DEkVR~aaV~ai~~l 369 (1678)
...++++|.--|+|.-|+||.|+|..+..+
T Consensus 300 le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 300 LEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 678999999999999999999999887544
No 29
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.46 E-value=0.015 Score=79.33 Aligned_cols=120 Identities=23% Similarity=0.201 Sum_probs=89.8
Q ss_pred hhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHH
Q 000315 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQ 342 (1678)
Q Consensus 263 ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~e 342 (1678)
.++.|-..|..+++.+|..|++.||+.-. +.+...+...+.|.++.||...+..+..+....+.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~------ 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP------ 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc------
Confidence 55666677778999999999999998631 23455566667899999999999998776433221
Q ss_pred HHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000315 343 ILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1678)
Q Consensus 343 ii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~L 407 (1678)
...|...|.|+|+.||.+|+.++..+.... . ..+...+.|+.+.||..|+..|+.+
T Consensus 686 -~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~-----~---~~l~~~L~D~d~~VR~~Av~aL~~~ 741 (897)
T PRK13800 686 -APALRDHLGSPDPVVRAAALDVLRALRAGD-----A---ALFAAALGDPDHRVRIEAVRALVSV 741 (897)
T ss_pred -hHHHHHHhcCCCHHHHHHHHHHHHhhccCC-----H---HHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 235666778899999999999887754211 1 2346688999999999999999974
No 30
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.33 E-value=0.37 Score=61.89 Aligned_cols=241 Identities=19% Similarity=0.288 Sum_probs=154.1
Q ss_pred hhHHHHHHHHHHHHhccccc-----ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhhhhHHHHHHH--------HHHh
Q 000315 165 ESVLSSMQTIMIVLLEESED-----IQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQF--------LVSS 231 (1678)
Q Consensus 165 ~~V~~~m~~IL~~vI~Ese~-----vp~~lLd~IL~~l~~~k~~~a~~LA~~vi~~~~dkL~~~I~q~--------f~~i 231 (1678)
+.|....+..+..++...+. +..+++..|+..+..... .....|.+++...+.. ...+... +.++
T Consensus 91 ~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~-~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l 168 (503)
T PF10508_consen 91 PKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDL-SVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSL 168 (503)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcH-HHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHH
Confidence 46777767777777776655 556777777777754432 3334444444443321 2222222 3333
Q ss_pred hcCCCCCCCCcchHHHHHHHHHhhCchhhhh-----hhhhhcccccCCChHHHHHHHHHHHHhhcCC-CCCchhhcHHHH
Q 000315 232 MSGDSRPGHSHIDYHEVIYDVYRCSPQILSG-----VVPYLTGELLTDQLDTRLKAVGLVGDLFAVP-GSANNEQFHSVF 305 (1678)
Q Consensus 232 l~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~-----ViP~Le~EL~sed~~~Rl~At~llG~mfs~~-~s~~a~~y~~~w 305 (1678)
+... ......++++++.+|.+..|+.+.. +++.+..+|..+|+-+|+.|+++|++|-..+ |..+..+ ..++
T Consensus 169 ~~~~--~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~-~gi~ 245 (503)
T PF10508_consen 169 MSQS--SDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQ-QGIF 245 (503)
T ss_pred Hhcc--CHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHh-CCHH
Confidence 3221 1112357899999999999988765 5689999999999999999999999998855 3333322 2344
Q ss_pred HHHHhhhcCC-----ChhHHHH-HHHHhHHHHhcCCCC--CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh----
Q 000315 306 SEFLKRLTDR-----IVAVRMS-VLEHVKSCLLTDPSR--ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA---- 373 (1678)
Q Consensus 306 ~~fL~R~~D~-----s~~VR~~-~ve~~~~iL~~~p~~--~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~---- 373 (1678)
........+. ...+.+- .+++.+.+...+|.. ...+.++..|...+...|...|..|+.+++.++.+.
T Consensus 246 ~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~ 325 (503)
T PF10508_consen 246 DKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQ 325 (503)
T ss_pred HHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHH
Confidence 4444443333 2222221 235555554444431 122456666676777899999999999999987522
Q ss_pred -c-CCCCH---HHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000315 374 -L-NSIPV---ETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1678)
Q Consensus 374 -l-~~V~~---elL~~LaeR~RDKK~~VR~eAm~~La~LY~~ 410 (1678)
+ ..-+. .+|+.++.+++.=+..+|..|+..|+.++..
T Consensus 326 ~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~ 367 (503)
T PF10508_consen 326 LLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTS 367 (503)
T ss_pred HHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Confidence 3 11122 3688999999999999999999999999964
No 31
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.29 E-value=2.1 Score=55.18 Aligned_cols=131 Identities=21% Similarity=0.220 Sum_probs=89.5
Q ss_pred hhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCC-ChhHHHHHHHHhHHHHhcCCCCCCh-
Q 000315 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDR-IVAVRMSVLEHVKSCLLTDPSRADA- 340 (1678)
Q Consensus 263 ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~-s~~VR~~~ve~~~~iL~~~p~~~~~- 340 (1678)
++|.|-.-|..+|..+-..|.++|.+|.+.+. .+..-+++....-|...... +..||+-+.+.+..|...++.....
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~-~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~ 198 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHPE-GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAV 198 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCch-hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 45566666788999999999999999998653 33333233334455555556 7789999999998887665542111
Q ss_pred --HHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh--cCCC-CHHHHHHHHHhhccCCh
Q 000315 341 --PQILTALCDRLLDFDENVRKQVVAVICDVACHA--LNSI-PVETVKLVAERLRDKSV 394 (1678)
Q Consensus 341 --~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~--l~~V-~~elL~~LaeR~RDKK~ 394 (1678)
+.+++.+...|.+.|--||+.++..+.++|... ...+ ...++..+...+.+-+.
T Consensus 199 ~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~ 257 (503)
T PF10508_consen 199 VNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEE 257 (503)
T ss_pred HhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhcccc
Confidence 137788888899999999999999999998722 2222 22345555555555443
No 32
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=96.24 E-value=5.6 Score=58.24 Aligned_cols=373 Identities=16% Similarity=0.117 Sum_probs=180.5
Q ss_pred CChhHHHHHHHHhHHHHhcCCCCC---ChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcC----CCCHHHHHHHHH
Q 000315 315 RIVAVRMSVLEHVKSCLLTDPSRA---DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN----SIPVETVKLVAE 387 (1678)
Q Consensus 315 ~s~~VR~~~ve~~~~iL~~~p~~~---~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~----~V~~elL~~Lae 387 (1678)
.+.+++...+.+...+...+.+.- .....++.|...|...++.+|..++.+++-++..+-. .+....+-.|..
T Consensus 416 ~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~ 495 (2102)
T PLN03200 416 ATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQ 495 (2102)
T ss_pred CCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH
Confidence 447899998888877554332210 0012457888889889999999999999888753321 223345667788
Q ss_pred hhccCChhHHHHHHHHHHHHHHHHhhhccCCCcchhccccchHHHhhhhccCCCCchhHHHHhhccCcCCCCCHHHHHHH
Q 000315 388 RLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRH 467 (1678)
Q Consensus 388 R~RDKK~~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~~wIPs~IL~~~Y~nd~~~~lVE~vL~e~LlP~~~~~~~R~~~ 467 (1678)
.++..+..+|++|+..|+++=... .+.......-+-||. |++++-..+.+. .+ .=+..
T Consensus 496 LL~s~~~~iqeeAawAL~NLa~~~----~qir~iV~~aGAIpp-LV~LL~sgd~~~--q~---------------~Aa~A 553 (2102)
T PLN03200 496 LLETGSQKAKEDSATVLWNLCCHS----EDIRACVESAGAVPA-LLWLLKNGGPKG--QE---------------IAAKT 553 (2102)
T ss_pred HHcCCCHHHHHHHHHHHHHHhCCc----HHHHHHHHHCCCHHH-HHHHHhCCCHHH--HH---------------HHHHH
Confidence 888889999999999998874310 000011122355564 555543222210 00 01112
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhc
Q 000315 468 WVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLK 547 (1678)
Q Consensus 468 ll~l~~~LD~~~~kal~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kl~~~i~~Ls~~fPDp~Ka~~~L~kf~kln 547 (1678)
+..+..+-|.... ..++++. . ++.+.++.....++..|...-....-.... .-
T Consensus 554 L~nLi~~~d~~~I-----------------~~Lv~LL---l-sdd~~~~~~aL~vLgnIlsl~~~~d~~~~g------~~ 606 (2102)
T PLN03200 554 LTKLVRTADAATI-----------------SQLTALL---L-GDLPESKVHVLDVLGHVLSVASLEDLVREG------SA 606 (2102)
T ss_pred HHHHHhccchhHH-----------------HHHHHHh---c-CCChhHHHHHHHHHHHHHhhcchhHHHHHh------hh
Confidence 2222222222211 1122221 0 122222222211222221111000000000 00
Q ss_pred cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc-CCCchHHHHHHHHHhhhccccChhHHHHHHHHHHhhcccchhhhHH
Q 000315 548 DANVWKILMNLLDSNTSFDQAFTGRDDLLKILG-AKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQ 626 (1678)
Q Consensus 548 D~Ri~kLLk~~idp~td~~tv~~a~kELlkkL~-~k~~~~e~l~~Ll~R~S~lifNks~V~~LL~~v~~~~~~~~~~~~~ 626 (1678)
+......|-.++...++ ..-..|. .++-.+- ... +.. ..++....|+-|+..+... +.....+
T Consensus 607 ~~ggL~~Lv~LL~sgs~-~ikk~Aa-~iLsnL~a~~~---d~~--------~avv~agaIpPLV~LLss~---~~~v~ke 670 (2102)
T PLN03200 607 ANDALRTLIQLLSSSKE-ETQEKAA-SVLADIFSSRQ---DLC--------ESLATDEIINPCIKLLTNN---TEAVATQ 670 (2102)
T ss_pred ccccHHHHHHHHcCCCH-HHHHHHH-HHHHHHhcCCh---HHH--------HHHHHcCCHHHHHHHHhcC---ChHHHHH
Confidence 00111111122221110 0000111 1111111 111 111 1134445577777766432 1112233
Q ss_pred HHHHHHHHHHhhCCc-----CccccHHHHHHHHhhccccchhhHHHHHHHhhcchHhhhhcccchHHHHHHHHhhcCChH
Q 000315 627 SCMDILGILARFSPL-----LLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRR 701 (1678)
Q Consensus 627 ~a~eLL~~IS~~~P~-----lFk~~v~~Li~lL~~~~~~~~e~aLkiLak~~k~i~e~~~~~~s~l~~~L~~lal~Gtpk 701 (1678)
.|..|....+...+. +=.+.+..|+++|...+..+++.++.+|+.+...-............+.|.++-.+|+++
T Consensus 671 AA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~ 750 (2102)
T PLN03200 671 SARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLE 750 (2102)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChH
Confidence 444444444322322 114568999999999887888999999998764321111112345688999999999999
Q ss_pred HHHHHHHHHHhhcCCCccch-H------HHHHHHHHHhhhhcC--CCch--HHHHHHHHHhh
Q 000315 702 QAKYAVHALAAITKDDGLKS-L------SVLYKRLVDMLEEKT--HLPA--VLQSLGCIAQT 752 (1678)
Q Consensus 702 qAKyAVr~Laa~~~~~~~~~-~------~~L~~~L~~~L~~~~--~l~t--~L~sLg~Iaq~ 752 (1678)
.=++|+.+|..++....... + .-.+..|++.|...+ +..+ .|..|+-+++.
T Consensus 751 ~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~ 812 (2102)
T PLN03200 751 GKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLART 812 (2102)
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhh
Confidence 99999999987775432111 1 112345555554222 3333 56666666664
No 33
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.21 E-value=0.52 Score=60.18 Aligned_cols=368 Identities=17% Similarity=0.189 Sum_probs=202.3
Q ss_pred HHHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCC-chhhcHHHHHHHHhhhcCCChhHHHH-
Q 000315 245 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA-NNEQFHSVFSEFLKRLTDRIVAVRMS- 322 (1678)
Q Consensus 245 ~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~-~a~~y~~~w~~fL~R~~D~s~~VR~~- 322 (1678)
+.+++-.+|+ -++|.-++|.|.+-|.+++=-+|-.++=.||-|--+ .-+ |..--|.+.--++.-..|+.|-||..
T Consensus 378 aLDVLanvf~--~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEG-cM~g~~p~LpeLip~l~~~L~DKkplVRsIT 454 (885)
T KOG2023|consen 378 ALDVLANVFG--DELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEG-CMQGFVPHLPELIPFLLSLLDDKKPLVRSIT 454 (885)
T ss_pred HHHHHHHhhH--HHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHH-HhhhcccchHHHHHHHHHHhccCccceeeee
Confidence 3556666664 367777899999999999999999999999977654 223 44445788888889999999999975
Q ss_pred -H--HHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh-cCCCCH--HHHHHH---HHhhccCC
Q 000315 323 -V--LEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-LNSIPV--ETVKLV---AERLRDKS 393 (1678)
Q Consensus 323 -~--ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~-l~~V~~--elL~~L---aeR~RDKK 393 (1678)
| -.+++.++.-+++ .--.-++..|..|++|..-+|.-|||.++..+...+ -+.||. .+|.++ ...-.-|+
T Consensus 455 CWTLsRys~wv~~~~~~-~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KN 533 (885)
T KOG2023|consen 455 CWTLSRYSKWVVQDSRD-EYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKN 533 (885)
T ss_pred eeeHhhhhhhHhcCChH-hhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcc
Confidence 3 3555555554432 223467889999999999999999999998886644 445553 122222 23334455
Q ss_pred hhHHHHHHHHHHHHHHHHhhhccCCCcchhccccchHHHhh--hhccCCCCc-------hhHHHHhhccCcCCCCCHHHH
Q 000315 394 VLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILR--CLYDKDFGS-------DTIESVLCGSLFPTGFSVKDR 464 (1678)
Q Consensus 394 ~~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~~wIPs~IL~--~~Y~nd~~~-------~lVE~vL~e~LlP~~~~~~~R 464 (1678)
..|==.||-+||.--..+..+..- ++. -||--|=. ..-+.|.+. ..|-..|-..++|+--++=+|
T Consensus 534 LlILYDAIgtlAdsvg~~Ln~~~Y----iqi--LmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~R 607 (885)
T KOG2023|consen 534 LLILYDAIGTLADSVGHALNKPAY----IQI--LMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQR 607 (885)
T ss_pred eehHHHHHHHHHHHHHHhcCcHHH----HHH--hccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHH
Confidence 666667777777766544322110 000 11221111 111222221 145566677788887777777
Q ss_pred HHHHHHHH----h--cCCH-------H-HHHHHHHHHHHHHHHHHHHHHHH------HHH-hhhcCCCcHHHHHHHHHHH
Q 000315 465 VRHWVRIF----S--GFDR-------I-EMKALEKILEQKQRLQQEMQRYL------SLR-QMHQDGDAPEIQKKILFCF 523 (1678)
Q Consensus 465 ~~~ll~l~----~--~LD~-------~-~~kal~~il~~k~~l~~~~~~~l------~l~-~~~~~~d~~ei~~kl~~~i 523 (1678)
.-++++-+ . +-|+ . -+-+|.-+-+.-+.+-..+..++ ++. +..+ ...|++.+---..+
T Consensus 608 c~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~-D~~peVRQS~FALL 686 (885)
T KOG2023|consen 608 CFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQ-DEVPEVRQSAFALL 686 (885)
T ss_pred HHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhc-cCChHHHHHHHHHH
Confidence 66665411 0 0011 0 00111112222222222222221 111 1122 24566654322223
Q ss_pred HHHHhhcCCchHHHHHHHHHHhhccHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhcccc
Q 000315 524 RVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSN--TSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLF 601 (1678)
Q Consensus 524 ~~Ls~~fPDp~Ka~~~L~kf~klnD~Ri~kLLk~~idp~--td~~tv~~a~kELlkkL~~k~~~~e~l~~Ll~R~S~lif 601 (1678)
--|++++++..+. +=..++.+|..-.+++ +-+..+.-|.-|+--+++.+. ..+++.++++.-. ++
T Consensus 687 GDltk~c~~~v~p----------~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~--~~~v~~vl~~L~~-ii 753 (885)
T KOG2023|consen 687 GDLTKACFEHVIP----------NLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKM--KQYVSPVLEDLIT-II 753 (885)
T ss_pred HHHHHHHHHhccc----------hHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhh--hhHHHHHHHHHHH-Hh
Confidence 3333444333322 1123444444444553 344566667788888887663 2566666665543 23
Q ss_pred ChhHHH-HHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccHHHHH
Q 000315 602 NKEHVK-EILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELV 651 (1678)
Q Consensus 602 Nks~V~-~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v~~Li 651 (1678)
|+.+.+ +|++.. | --+-.+..++|+++..|.+..+
T Consensus 754 n~~~~~~tllENt--------------A-ITIGrLg~~~Pe~vAp~l~~f~ 789 (885)
T KOG2023|consen 754 NRQNTPKTLLENT--------------A-ITIGRLGYICPEEVAPHLDSFM 789 (885)
T ss_pred cccCchHHHHHhh--------------h-hhhhhhhccCHHhcchhHHHHH
Confidence 443333 333311 1 1123367799999999876554
No 34
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.06 E-value=10 Score=52.01 Aligned_cols=166 Identities=17% Similarity=0.175 Sum_probs=100.7
Q ss_pred hhHHHHHHHHHhhhhhhhcccCC-chHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHhcC
Q 000315 121 GRRVVILETLAKYRSCVVMLDLE-CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGR 199 (1678)
Q Consensus 121 ~~~~~lLe~lA~vks~vl~~DL~-~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~vp~~lLd~IL~~l~~ 199 (1678)
..-++.+.-+.+-..++-..|.+ |=.=+..+|..||.+- ....+.+.....+++..|+.++-.+-+.+-..++..+..
T Consensus 282 ~~t~~W~~v~~~~~~~la~~q~~~~~~~~~~~~~~~~t~~-~s~~~e~~q~a~q~l~~il~~sv~~~~~~c~~~~~~~l~ 360 (1176)
T KOG1248|consen 282 LLTVAWLKVLNEAHDILATLQEEKALQALPRLFSLFFTIL-ESLIEELVQAASQSLKEILKESVTVIDALCSKQLHSLLD 360 (1176)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHhhhhhhhHHHHHH-hcccHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHc
Confidence 45577777777777777767766 5556677888888844 344566788889999999999888767666665655544
Q ss_pred CCcHHHHHH----HHHHHHHhhhhhHHHHHHHHHHhhc-CCCCCCCCcchHH-HHHHHHHhhCchhhhhhhhhhcccccC
Q 000315 200 NKNDTARRL----AMNVIEQCAGKLEAGIKQFLVSSMS-GDSRPGHSHIDYH-EVIYDVYRCSPQILSGVVPYLTGELLT 273 (1678)
Q Consensus 200 ~k~~~a~~L----A~~vi~~~~dkL~~~I~q~f~~il~-~d~~~~~~~~~~h-~Li~eL~~~~P~lL~~ViP~Le~EL~s 273 (1678)
-+..++|.+ -..+|++|...-.|++..-+..+-. ..+........++ -+.-.+-..=|+.+++++|.= |..
T Consensus 361 ~kf~~~~~~ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLn---l~~ 437 (1176)
T KOG1248|consen 361 YKFHAVWRFILQILSALFEKCGELSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTILPLN---LHA 437 (1176)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcchh---ccc
Confidence 444455544 4555566666555555444433221 1111122222443 455667778999999999972 232
Q ss_pred C-ChHHHHHHHHHHHHhh
Q 000315 274 D-QLDTRLKAVGLVGDLF 290 (1678)
Q Consensus 274 e-d~~~Rl~At~llG~mf 290 (1678)
+ ..-.|.=-.-+|-+-+
T Consensus 438 ~s~~~~RsWLLPvLR~~i 455 (1176)
T KOG1248|consen 438 ESLSFTRSWLLPVLRDYI 455 (1176)
T ss_pred cccccchhHhHHHHHHhh
Confidence 2 2334444444444444
No 35
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.00 E-value=3.3 Score=53.18 Aligned_cols=231 Identities=16% Similarity=0.183 Sum_probs=148.0
Q ss_pred HHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCH--
Q 000315 302 HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV-- 379 (1678)
Q Consensus 302 ~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~-- 379 (1678)
.+++-.-|..|.|+.+.||-+...++..++..-+.. -...++..+..-+.+.-++=-.++|+.++-++......++.
T Consensus 215 v~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~-aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~l 293 (569)
T KOG1242|consen 215 VPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAY-AVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCL 293 (569)
T ss_pred HhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcc-hhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHH
Confidence 556667777889999999999999998876653322 23567777777777777777789999998887766554433
Q ss_pred -HHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCcchhccccchHHHhhhhccCCCC-chhHHHHhhccCcCC
Q 000315 380 -ETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFG-SDTIESVLCGSLFPT 457 (1678)
Q Consensus 380 -elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~~wIPs~IL~~~Y~nd~~-~~lVE~vL~e~LlP~ 457 (1678)
+++..+.+.|-|-|+.||+.++++|-++=... ++ ..+.-|=.++++|+-++.-+ ...++.+...
T Consensus 294 p~iiP~lsevl~DT~~evr~a~~~~l~~~~svi-----dN----~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~t----- 359 (569)
T KOG1242|consen 294 PDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI-----DN----PDIQKIIPTLLDALADPSCYTPECLDSLGAT----- 359 (569)
T ss_pred hHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh-----cc----HHHHHHHHHHHHHhcCcccchHHHHHhhcce-----
Confidence 56788999999999999999999998876642 11 12334455677776444311 2344444333
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCchHHH
Q 000315 458 GFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAE 537 (1678)
Q Consensus 458 ~~~~~~R~~~ll~l~~~LD~~~~kal~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kl~~~i~~Ls~~fPDp~Ka~ 537 (1678)
++....|+.+..-+--|+.+.-. - -+..++++...+|..+++..+||....
T Consensus 360 ------------tFV~~V~~psLalmvpiL~R~l~----------e-------Rst~~kr~t~~IidNm~~LveDp~~la 410 (569)
T KOG1242|consen 360 ------------TFVAEVDAPSLALMVPILKRGLA----------E-------RSTSIKRKTAIIIDNMCKLVEDPKDLA 410 (569)
T ss_pred ------------eeeeeecchhHHHHHHHHHHHHh----------h-------ccchhhhhHHHHHHHHHHhhcCHHHHh
Confidence 23345555544333334332111 1 122345566667888888888988877
Q ss_pred HHHHHHHhhccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 000315 538 ENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAK 582 (1678)
Q Consensus 538 ~~L~kf~klnD~Ri~kLLk~~idp~td~~tv~~a~kELlkkL~~k 582 (1678)
..|..+. +.+...+.+. .|++.+ .+.++.-.+++++|..
T Consensus 411 pfl~~Ll----p~lk~~~~d~-~PEvR~-vaarAL~~l~e~~g~~ 449 (569)
T KOG1242|consen 411 PFLPSLL----PGLKENLDDA-VPEVRA-VAARALGALLERLGEV 449 (569)
T ss_pred hhHHHHh----hHHHHHhcCC-ChhHHH-HHHHHHHHHHHHHHhh
Confidence 6666554 3344444444 566555 2344666677777654
No 36
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.88 E-value=0.077 Score=60.40 Aligned_cols=146 Identities=18% Similarity=0.154 Sum_probs=104.4
Q ss_pred hhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHH
Q 000315 264 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQI 343 (1678)
Q Consensus 264 iP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~ei 343 (1678)
++.|...+.+..-.+-..|..+++.|+..-+..|......+....|++..|....||.....+...|+.+-+.. ..+
T Consensus 55 ~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~---~~~ 131 (228)
T PF12348_consen 55 LDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYS---PKI 131 (228)
T ss_dssp -HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH---HHH
Confidence 34555556666777888999999999987666666667788889999999999999999999998888764411 245
Q ss_pred -HHHHHhhhCCChhHHHHHHHHHHHHhhhhhc---CCCC-----HHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHh
Q 000315 344 -LTALCDRLLDFDENVRKQVVAVICDVACHAL---NSIP-----VETVKLVAERLRDKSVLVKRYTMERLADIFRGCC 412 (1678)
Q Consensus 344 -i~~L~~rL~D~DEkVR~aaV~ai~~la~~~l---~~V~-----~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~ 412 (1678)
...+..-+.+-...||..++..+..+..... ..+. ..+...+..-+.|.++.||..|-..+..+|+.+-
T Consensus 132 ~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 132 LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 7888888999999999999998877654333 2221 3467899999999999999999999999999763
No 37
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.80 E-value=0.73 Score=54.43 Aligned_cols=231 Identities=12% Similarity=0.204 Sum_probs=151.8
Q ss_pred hhhcCCCcchHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhcccC
Q 000315 63 VLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDL 142 (1678)
Q Consensus 63 ~LL~HkD~~Vr~~vAcCLadIlRI~APdaPytd~qLkdIF~l~v~qf~~L~d~~~p~f~~~~~lLe~lA~vks~vl~~DL 142 (1678)
..|.+.|..+|+-.--||++++-=..|+. .+..|..-++.||.+-| .|. ..+...+.-....+-|-.+
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~-L~~~ev~~L~~F~~~rl---~D~--------~~~~~~l~gl~~L~~~~~~ 73 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPDF-LSRQEVQVLLDFFCSRL---DDH--------ACVQPALKGLLALVKMKNF 73 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHhh-ccHHHHHHHHHHHHHHh---ccH--------hhHHHHHHHHHHHHhCcCC
Confidence 46788999999999999999997654444 78899999999999865 342 2233333333333334444
Q ss_pred CchHHHHHHHHHHHHhhc-CCChhhHHHHHHHHHHHHhcc----cccccHHHHHHHHHHhcCCCcH----HHHHHHHHHH
Q 000315 143 ECDELVNEMYSTFFAVAS-DDHPESVLSSMQTIMIVLLEE----SEDIQEDLLVILLSALGRNKND----TARRLAMNVI 213 (1678)
Q Consensus 143 ~~~~Li~~lF~~ff~~v~-~~~~~~V~~~m~~IL~~vI~E----se~vp~~lLd~IL~~l~~~k~~----~a~~LA~~vi 213 (1678)
+ .+....+.+.+|+-+. ..++...+...-.||..+++. ...+..+.+.-++..+..+|-. -++.|...|+
T Consensus 74 ~-~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~ 152 (262)
T PF14500_consen 74 S-PESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVIL 152 (262)
T ss_pred C-hhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 3 2335555555555443 345666666666666666655 3446778888888777554432 7888888887
Q ss_pred HHhhhhhHHHHHHHHHHhhc------CCCCCCCCcchHHHHHHHHHhh---CchhhhhhhhhhcccccCCChHHHHHHHH
Q 000315 214 EQCAGKLEAGIKQFLVSSMS------GDSRPGHSHIDYHEVIYDVYRC---SPQILSGVVPYLTGELLTDQLDTRLKAVG 284 (1678)
Q Consensus 214 ~~~~dkL~~~I~q~f~~il~------~d~~~~~~~~~~h~Li~eL~~~---~P~lL~~ViP~Le~EL~sed~~~Rl~At~ 284 (1678)
..-. +.+.+..+|--+.. ..+......+..-+|-..|..| .|..-.-++|.|-+.|.++...++..+.+
T Consensus 153 ~~~~--~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~ 230 (262)
T PF14500_consen 153 QEFD--ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQ 230 (262)
T ss_pred Hhcc--cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 7765 46777777743321 1111011244445555555544 67777789999999999999999999999
Q ss_pred HHHHhhcCCCCC-chhhcHHHHHHH
Q 000315 285 LVGDLFAVPGSA-NNEQFHSVFSEF 308 (1678)
Q Consensus 285 llG~mfs~~~s~-~a~~y~~~w~~f 308 (1678)
+|..++..-|.. +.....++|.+.
T Consensus 231 tL~~c~~~y~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 231 TLKACIENYGADSLSPHWSTIWNAL 255 (262)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 999999876643 344457777754
No 38
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.75 E-value=5.4 Score=50.84 Aligned_cols=254 Identities=17% Similarity=0.182 Sum_probs=142.8
Q ss_pred cccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHh
Q 000315 270 ELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCD 349 (1678)
Q Consensus 270 EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~ 349 (1678)
-+.+.+-.+|....++|+.+.-.-+.-=-.-|-.+-...++|.-|+.+.||.+.|.+...+= .-+.++...+...|..
T Consensus 99 g~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Q--e~~~neen~~~n~l~~ 176 (885)
T COG5218 99 GTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQ--EMELNEENRIVNLLKD 176 (885)
T ss_pred cccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH--hccCChHHHHHHHHHH
Confidence 35578999999999999987654331001234455667889999999999999999876532 2233444555555544
Q ss_pred h-hCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCcchhccccc
Q 000315 350 R-LLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWI 428 (1678)
Q Consensus 350 r-L~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~~wI 428 (1678)
- -+||-+.||.+|.--| .|+..++-.+.||.||=....|+- +|....+++.+ -++..|
T Consensus 177 ~vqnDPS~EVRr~allni---------~vdnsT~p~IlERarDv~~anRr~-------vY~r~Lp~iGd-----~~~lsi 235 (885)
T COG5218 177 IVQNDPSDEVRRLALLNI---------SVDNSTYPCILERARDVSGANRRM-------VYERCLPRIGD-----LKSLSI 235 (885)
T ss_pred HHhcCcHHHHHHHHHHHe---------eeCCCcchhHHHHhhhhhHHHHHH-------HHHHHhhhhcc-----hhhccc
Confidence 3 3899999999965554 455566777899999999888874 45544444321 234455
Q ss_pred hHHHhhhhc-cCC--CC--chhHHHHhhccCcCCCCCHHHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHH--HHHHH
Q 000315 429 PGKILRCLY-DKD--FG--SDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRI----EMKALEKILEQKQR--LQQEM 497 (1678)
Q Consensus 429 Ps~IL~~~Y-~nd--~~--~~lVE~vL~e~LlP~~~~~~~R~~~ll~l~~~LD~~----~~kal~~il~~k~~--l~~~~ 497 (1678)
--+|+-.=+ -+| +. ...+|-+....+.|.+.. ++.+...||-. .++|+..+|..+.- .+..+
T Consensus 236 ~kri~l~ewgl~dRe~sv~~a~~d~ia~~w~~~~d~~-------lveLle~lDvSr~sv~v~aik~~F~~R~D~ls~~eF 308 (885)
T COG5218 236 DKRILLMEWGLLDREFSVKGALVDAIASAWRIPEDLR-------LVELLEFLDVSRRSVLVAAIKGVFEKRPDVLSEKEF 308 (885)
T ss_pred cceehhhhhcchhhhhhHHHHHHHHHHHHhccccccc-------HHHHHHHHhhhhHHHHHHHHHHHHhhccccchhhhc
Confidence 555542211 222 22 237788888888877643 33333334332 22233333221110 01111
Q ss_pred HHHHHHHhhhcCCCcHHHH-H----HHHHHHHHHHhhcCCchHHHHHHHHHHhhccHHHHHHHH
Q 000315 498 QRYLSLRQMHQDGDAPEIQ-K----KILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILM 556 (1678)
Q Consensus 498 ~~~l~l~~~~~~~d~~ei~-~----kl~~~i~~Ls~~fPDp~Ka~~~L~kf~klnD~Ri~kLLk 556 (1678)
-.|+ +.... .+..-.. + =|...|.-|-.-||+..+....+..+..+.++..|.-+-
T Consensus 309 Pe~~--w~d~T-~E~tfL~rt~~lyCldnNitell~~fPe~~~L~~~~~hyvslry~sSYnt~c 369 (885)
T COG5218 309 PEYL--WSDPT-EENTFLSRTELLYCLDNNITELLGRFPESLALPDLESHYVSLRYRSSYNTLC 369 (885)
T ss_pred HHHH--hhCch-HHHHHHHHHHHHHHHhccHHHHHhhchhhhcchHHHhhheeeeeccccchhH
Confidence 1111 00000 0000000 0 112234444455999999888888888787766444333
No 39
>KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only]
Probab=95.55 E-value=0.012 Score=67.89 Aligned_cols=65 Identities=25% Similarity=0.385 Sum_probs=51.3
Q ss_pred CCCCCCccccCceEEEecCCCCceEEEEEEee-cCCCCeeEEEccCCc----ceeeec---CcccEEEecCCC
Q 000315 1371 NAGVNIEDLIGYRIKVWWPMDKQFYEGTIKSY-DPIKKKHVILYDDED----VEVLRL---DKERWELLDNGR 1435 (1678)
Q Consensus 1371 ~~~~~~~~lvG~rv~V~Wp~D~~~Y~G~V~~y-~~~~~~H~v~YdDgd----~E~l~L---~~e~~~~~~~~~ 1435 (1678)
-+...++.+||++|..-||+++.||++.|+.| ....++|.+.||..+ ++|++| ..|+++|...+.
T Consensus 152 ~~n~pp~slvgr~v~~k~pdk~~~te~iit~~~~~~E~~~~l~~~~~~~~~p~~wvdl~~I~p~DIrw~g~~~ 224 (273)
T KOG4675|consen 152 WGNVPPESLVGRKVWIKWPDKRKFTEAIITQYDAEKEGHHLLVPDINDCNDPWEWVDLREISPEDIRWEGGDP 224 (273)
T ss_pred cccCCchhhccccccccCcccccccccccccchhhhhhhhhcccccccccCCccccccccCCHHhccccCCCC
Confidence 34566777999999999999999999999994 556667888888655 667776 477788876543
No 40
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.33 E-value=5.1 Score=51.99 Aligned_cols=188 Identities=19% Similarity=0.158 Sum_probs=126.6
Q ss_pred hhhcccccCCChHHHHHHHHHHHHhhcCCCCCchh-----hcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhc----CC
Q 000315 265 PYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE-----QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT----DP 335 (1678)
Q Consensus 265 P~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~-----~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~----~p 335 (1678)
|-|.--|++.|-.+|..|..++-+.|--.+.+... --..-|....+=..|--|.||-..++.+-.+..- -|
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP 256 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP 256 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 67788899999999999999999999876655421 2233355555677899999999999888775542 25
Q ss_pred CCCChHHHHHHHHh-hhCCChhHHHHHHHHHHHHhhhhhcCCCCHH-HHHHHHHhhccCChhHHHHHHHHHHHHHHHHhh
Q 000315 336 SRADAPQILTALCD-RLLDFDENVRKQVVAVICDVACHALNSIPVE-TVKLVAERLRDKSVLVKRYTMERLADIFRGCCL 413 (1678)
Q Consensus 336 ~~~~~~eii~~L~~-rL~D~DEkVR~aaV~ai~~la~~~l~~V~~e-lL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~ 413 (1678)
.. ...++++.+.+ --.|+--.||.+|++.+-.++.....+-=.+ +|..|..-+-|+.-+||..+...|.+|=++-.-
T Consensus 257 ~~-i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra~ 335 (1005)
T KOG1949|consen 257 PT-ILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRAA 335 (1005)
T ss_pred HH-HHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhhhh
Confidence 42 23455544443 4588999999999999988776554433223 567888889999999999999999998776321
Q ss_pred hccCCCcchhccccchHHHhhhhccCCCC--chhHHHHhhccCcCCCCCHH
Q 000315 414 RNFNGSINQNEFEWIPGKILRCLYDKDFG--SDTIESVLCGSLFPTGFSVK 462 (1678)
Q Consensus 414 ~~~~~~~~~~~~~wIPs~IL~~~Y~nd~~--~~lVE~vL~e~LlP~~~~~~ 462 (1678)
.-+.-||--.+-.--..|-+ ..-+-+.++...||..-+.+
T Consensus 336 ---------~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~k~ee 377 (1005)
T KOG1949|consen 336 ---------KFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFLPVNKPEE 377 (1005)
T ss_pred ---------hhhccccHHHHHHHHhccccHHHHHHHHHHHHhhcCCCCcHH
Confidence 22333443333222233432 12344555667778765443
No 41
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.23 E-value=0.057 Score=51.84 Aligned_cols=86 Identities=23% Similarity=0.232 Sum_probs=65.6
Q ss_pred hhhhcccc-cCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHH
Q 000315 264 VPYLTGEL-LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQ 342 (1678)
Q Consensus 264 iP~Le~EL-~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~e 342 (1678)
||.|-..| ...+..+|..|+.+||++- .+.+...++..+.|.++.||.+.+.+.+.+ - ..+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i-~-------~~~ 62 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRI-G-------DPE 62 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC-H-------HHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh-C-------CHH
Confidence 45666667 7889999999999999431 235566666667999999999999999864 1 247
Q ss_pred HHHHHHhhhCCC-hhHHHHHHHHHHH
Q 000315 343 ILTALCDRLLDF-DENVRKQVVAVIC 367 (1678)
Q Consensus 343 ii~~L~~rL~D~-DEkVR~aaV~ai~ 367 (1678)
.+..|.+.+.|. +..||.+++.+++
T Consensus 63 ~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 63 AIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp THHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 888999988775 4567999888763
No 42
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.83 E-value=0.39 Score=64.82 Aligned_cols=125 Identities=15% Similarity=0.126 Sum_probs=90.0
Q ss_pred HHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHH-HHH
Q 000315 307 EFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETV-KLV 385 (1678)
Q Consensus 307 ~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL-~~L 385 (1678)
.|+-|+.|+.|.||+.|++..+-.+.+-|+.-...-.++++.=.|.|-...||+.+|+++.-+-...-..-..+++ .-.
T Consensus 291 VFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRF 370 (1048)
T KOG2011|consen 291 VFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRF 370 (1048)
T ss_pred eeeeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 6888999999999999999999888888864333467899999999999999999999998877653222222222 222
Q ss_pred HHh-----hccCChhHHHHHHHHHHHHHHHHhhhccCCCcchhccccchHHHhhhhccCCCC
Q 000315 386 AER-----LRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFG 442 (1678)
Q Consensus 386 aeR-----~RDKK~~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~~wIPs~IL~~~Y~nd~~ 442 (1678)
.+| .||-.+.||..++..+..++..-... ... -..|.+++|+.+.+
T Consensus 371 K~RIVeMadrd~~~~Vrav~L~~~~~~~~~g~L~-------d~d----i~~Vy~Li~d~~r~ 421 (1048)
T KOG2011|consen 371 KDRIVEMADRDRNVSVRAVGLVLCLLLSSSGLLS-------DKD----ILIVYSLIYDSNRR 421 (1048)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHhcccccC-------hhH----HHHHHHHHhccCcc
Confidence 222 58889999999998887776643211 111 23457778877655
No 43
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.83 E-value=5 Score=52.82 Aligned_cols=376 Identities=13% Similarity=0.084 Sum_probs=194.6
Q ss_pred hhhhhhcccccCCChHHHHHHHH-HHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCCh
Q 000315 262 GVVPYLTGELLTDQLDTRLKAVG-LVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADA 340 (1678)
Q Consensus 262 ~ViP~Le~EL~sed~~~Rl~At~-llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~ 340 (1678)
+.+|.+-.+|.+.-...|..|++ +++.|--+. ++.. +|...++-..=.+.+.---+=.++...-..+|.. +
T Consensus 13 ~ei~elks~l~s~~~~kr~~a~kkvIa~Mt~G~--DvSs----lF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~--a 84 (734)
T KOG1061|consen 13 GEIPELKSQLNSQSKEKRKDAVKKVIAYMTVGK--DVSS----LFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL--A 84 (734)
T ss_pred hhchHHHHHhhhhhhhhHHHHHHHHHhcCccCc--chHh----hhHHHHhhcccCCchHHHHHHHHHHHhhccCchH--H
Confidence 34555556665555566666664 566665542 4454 4444554444445666666666666555667753 4
Q ss_pred HHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCc
Q 000315 341 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSI 420 (1678)
Q Consensus 341 ~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~~~~ 420 (1678)
...+..+.+-.-|+++.+|.-|+...| +-....+.+-+..-+..-++|+.+-||+.|..+++++|.....-+.
T Consensus 85 ~~avnt~~kD~~d~np~iR~lAlrtm~---~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~---- 157 (734)
T KOG1061|consen 85 ILAVNTFLKDCEDPNPLIRALALRTMG---CLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVE---- 157 (734)
T ss_pred HhhhhhhhccCCCCCHHHHHHHhhcee---eEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhcc----
Confidence 456788888899999999998655543 3333444455667778888999999999999999999985432211
Q ss_pred chhccccchHHHhhhhccCCCCc-----hhHHHHhhcc--CcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 000315 421 NQNEFEWIPGKILRCLYDKDFGS-----DTIESVLCGS--LFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRL 493 (1678)
Q Consensus 421 ~~~~~~wIPs~IL~~~Y~nd~~~-----~lVE~vL~e~--LlP~~~~~~~R~~~ll~l~~~LD~~~~kal~~il~~k~~l 493 (1678)
-..++..+=.++.+.++.. ..+..+.-.. -.++.++ ..+...++....-+++.+. ..|+.
T Consensus 158 ----~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~-~~~~~~lL~al~ec~EW~q---i~IL~----- 224 (734)
T KOG1061|consen 158 ----DSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELN-PQLINKLLEALNECTEWGQ---IFILD----- 224 (734)
T ss_pred ----ccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCccccc-HHHHHHHHHHHHHhhhhhH---HHHHH-----
Confidence 1222333333333233220 1111111111 1111111 2345555554444444322 11111
Q ss_pred HHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcC-CchHHHHHHHHHHhhccHHHHHHHHH-------Hhc--CCC
Q 000315 494 QQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFA-EPAKAEENFLILDQLKDANVWKILMN-------LLD--SNT 563 (1678)
Q Consensus 494 ~~~~~~~l~l~~~~~~~d~~ei~~kl~~~i~~Ls~~fP-Dp~Ka~~~L~kf~klnD~Ri~kLLk~-------~id--p~t 563 (1678)
++..+.-.+..+.+.-+..+.-+|.-.-+ --.-+...+..+.++.....-.+++. +++ ++.
T Consensus 225 ---------~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~e~ 295 (734)
T KOG1061|consen 225 ---------CLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSESEI 295 (734)
T ss_pred ---------HHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccchh
Confidence 11111111111222111111111100000 00011222222222111100011111 222 234
Q ss_pred CHHHHHHHHHHHHHHhc---CC-Cch----H--HHHHHHHHhhhccccChhHHHHHHHHHHhhcccchhhhHHHHHHHHH
Q 000315 564 SFDQAFTGRDDLLKILG---AK-HRL----Y--DFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILG 633 (1678)
Q Consensus 564 d~~tv~~a~kELlkkL~---~k-~~~----~--e~l~~Ll~R~S~lifNks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~ 633 (1678)
.|-.++|+.--+.++-+ .+ ..+ . -+++..-..+-..+.|.+++..++..+..........+...+.+-+-
T Consensus 296 qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig 375 (734)
T KOG1061|consen 296 QYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIG 375 (734)
T ss_pred hHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhh
Confidence 45555555444443322 11 000 0 13455555677778899999999998877655555556677778888
Q ss_pred HHHhhCCcCccccHHHHHHHHhhccccchhhHHHHHHHhhcc
Q 000315 634 ILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGT 675 (1678)
Q Consensus 634 ~IS~~~P~lFk~~v~~Li~lL~~~~~~~~e~aLkiLak~~k~ 675 (1678)
.++...+.. .+++..|+++++-.-..++.+++.++..+...
T Consensus 376 ~~aik~e~~-~~cv~~lLell~~~~~yvvqE~~vvi~dilRk 416 (734)
T KOG1061|consen 376 RLAIKAEQS-NDCVSILLELLETKVDYVVQEAIVVIRDILRK 416 (734)
T ss_pred hhhhhhhhh-hhhHHHHHHHHhhcccceeeehhHHHHhhhhc
Confidence 888888888 77899999999965555666777777766433
No 44
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.70 E-value=7.7 Score=48.81 Aligned_cols=299 Identities=16% Similarity=0.206 Sum_probs=164.9
Q ss_pred CcchHHHHHHHHHHHHhhcCCCCCCChh--HHHH-HHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhh-hhcccCC-
Q 000315 69 DKDVKLLVATCICEITRITAPEAPYSDD--VLKD-IFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSC-VVMLDLE- 143 (1678)
Q Consensus 69 D~~Vr~~vAcCLadIlRI~APdaPytd~--qLkd-IF~l~v~qf~~L~d~~~p~f~~~~~lLe~lA~vks~-vl~~DL~- 143 (1678)
+.+.-..+.-||..++.-..-+.++.+. ...+ |...+++.+-...+.+.. ....+|+.++.+=.. +-.++.+
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~---~~~~~L~~~~~l~~~iv~~l~~~~ 132 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSD---LDDRVLELLSRLINLIVRSLSPEK 132 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccc---cchHHHHHHHHHHHHHHHhCCHHH
Confidence 3444444555566666555544534432 2232 444444433222222222 445667777765333 3335544
Q ss_pred chHHHHHHHHHHHHh-----hcC------CChhhHHHHHHHHHHHHhccccccc--HHHHHHHHHHhcCCCcH----HHH
Q 000315 144 CDELVNEMYSTFFAV-----ASD------DHPESVLSSMQTIMIVLLEESEDIQ--EDLLVILLSALGRNKND----TAR 206 (1678)
Q Consensus 144 ~~~Li~~lF~~ff~~-----v~~------~~~~~V~~~m~~IL~~vI~Ese~vp--~~lLd~IL~~l~~~k~~----~a~ 206 (1678)
.++++.++|..|+.. ... ..+.........|+..+=-+. .+| .++++-++......... ++.
T Consensus 133 q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~-~~~~~~~ll~~l~~~~~~~~~~~~~~~~~ 211 (415)
T PF12460_consen 133 QQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDV-SLPDLEELLQSLLNLALSSEDEFSRLAAL 211 (415)
T ss_pred HHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCccc-CccCHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 578899999999811 000 123333333334433322222 233 23445444433222222 555
Q ss_pred HHHHHHHHHh--hhhhHHHHHHHHHHhhcCCCCCCCCcchHHH--------HHHHHHhhCchhhhhhhhhhcccccCCCh
Q 000315 207 RLAMNVIEQC--AGKLEAGIKQFLVSSMSGDSRPGHSHIDYHE--------VIYDVYRCSPQILSGVVPYLTGELLTDQL 276 (1678)
Q Consensus 207 ~LA~~vi~~~--~dkL~~~I~q~f~~il~~d~~~~~~~~~~h~--------Li~eL~~~~P~lL~~ViP~Le~EL~sed~ 276 (1678)
++..-++|++ .+.+...+..++..+ . ............+ |+...+..+.+++...+-.| .+ .
T Consensus 212 ~~la~LvNK~~~~~~l~~~l~~~~~~~-~-~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL----~~--~ 283 (415)
T PF12460_consen 212 QLLASLVNKWPDDDDLDEFLDSLLQSI-S-SSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELL----SS--P 283 (415)
T ss_pred HHHHHHHcCCCChhhHHHHHHHHHhhh-c-ccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHh----CC--h
Confidence 6677788874 444666666666554 1 1111111112222 22222222333344433332 22 7
Q ss_pred HHHHHHHHHHHHhhcC-CC-------CCc-----hhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCC---CCh
Q 000315 277 DTRLKAVGLVGDLFAV-PG-------SAN-----NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR---ADA 340 (1678)
Q Consensus 277 ~~Rl~At~llG~mfs~-~~-------s~~-----a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~---~~~ 340 (1678)
.+...|.+.+|-+++. ++ ++. =+-|-.+....+..+...+..+|..++.+...+|.+-|.. .+.
T Consensus 284 ~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l 363 (415)
T PF12460_consen 284 ELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPEL 363 (415)
T ss_pred hhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 7899999999999988 32 110 1234556667788888888889999999999999877752 345
Q ss_pred HHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCH
Q 000315 341 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV 379 (1678)
Q Consensus 341 ~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~ 379 (1678)
.+|+.-|.+.|-=+|..||.++..++..+.......+.+
T Consensus 364 ~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~ 402 (415)
T PF12460_consen 364 PTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISE 402 (415)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 678888888887788889999999998877766444444
No 45
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=94.57 E-value=6.1 Score=51.50 Aligned_cols=219 Identities=16% Similarity=0.238 Sum_probs=117.3
Q ss_pred hhhcCCCcchHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhcccC
Q 000315 63 VLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDL 142 (1678)
Q Consensus 63 ~LL~HkD~~Vr~~vAcCLadIlRI~APdaPytd~qLkdIF~l~v~qf~~L~d~~~p~f~~~~~lLe~lA~vks~vl~~DL 142 (1678)
..|.....-||..+|.||+-+.-. -.||.-+++..||..+-.-.+.=. + +-....|..+.. +|-+
T Consensus 560 ~gl~De~qkVR~itAlalsalaea---a~Pygie~fDsVlkpLwkgir~hr---g---k~laafLkAigy-----lipl- 624 (1172)
T KOG0213|consen 560 HGLKDEQQKVRTITALALSALAEA---ATPYGIEQFDSVLKPLWKGIRQHR---G---KELAAFLKAIGY-----LIPL- 624 (1172)
T ss_pred HhhcccchhhhhHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHHHcc---C---hHHHHHHHHHhh-----cccc-
Confidence 344555566999999999988775 468999999999998865443111 1 111222222221 1111
Q ss_pred CchHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHhhh
Q 000315 143 ECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKN----DTARRLAMNVIEQCAG 218 (1678)
Q Consensus 143 ~~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~vp~~lLd~IL~~l~~~k~----~~a~~LA~~vi~~~~d 218 (1678)
+..-+..+|. ..+|.-+|-|..+-..+.-.++|.-+.+.-. +++|.-- +
T Consensus 625 -----md~eya~yyT--------------revmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~--------d 677 (1172)
T KOG0213|consen 625 -----MDAEYASYYT--------------REVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRF--------D 677 (1172)
T ss_pred -----ccHHHHHHhH--------------HHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhh--------h
Confidence 1112222222 3455566666655555555555554433211 1333211 2
Q ss_pred hhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhh--CchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCC
Q 000315 219 KLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRC--SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA 296 (1678)
Q Consensus 219 kL~~~I~q~f~~il~~d~~~~~~~~~~h~Li~eL~~~--~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~ 296 (1678)
.+...+..|.+--+.+|... -..+-+.-.+|..- |-.++.- +-.+|..|.++.|..+.+++.++|+..|..
T Consensus 678 ilp~ff~~fw~rrmA~drr~---ykqlv~ttv~ia~KvG~~~~v~R----~v~~lkde~e~yrkm~~etv~ri~~~lg~~ 750 (1172)
T KOG0213|consen 678 ILPEFFFSFWGRRMALDRRN---YKQLVDTTVEIAAKVGSDPIVSR----VVLDLKDEPEQYRKMVAETVSRIVGRLGAA 750 (1172)
T ss_pred hhHHHHhhhhhhhhhccccc---hhhHHHHHHHHHHHhCchHHHHH----HhhhhccccHHHHHHHHHHHHHHHhccccc
Confidence 22222223322222222110 00112222222211 2233333 335678899999999999999999876532
Q ss_pred -----------------c------------------------hhhc-HHHHHHHHhhhcCCChhHHHHHHHHhHHH
Q 000315 297 -----------------N------------------------NEQF-HSVFSEFLKRLTDRIVAVRMSVLEHVKSC 330 (1678)
Q Consensus 297 -----------------~------------------------a~~y-~~~w~~fL~R~~D~s~~VR~~~ve~~~~i 330 (1678)
| ++.| |.+-..-|.|.+.+++.||....+.+..|
T Consensus 751 diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~l 826 (1172)
T KOG0213|consen 751 DIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSL 826 (1172)
T ss_pred cccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 1 1222 66777778899999999999877766653
No 46
>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix. The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. The domain is essential for the recruitment of proteins to double stranded breaks in DNA, which is mediated by interaction with methylated Lys 79 of histone H3 []. ; PDB: 3LGL_A 1XNI_B 3LGF_A 2G3R_A 2IG0_A 3LH0_A 1SSF_A.
Probab=94.53 E-value=0.061 Score=55.44 Aligned_cols=46 Identities=30% Similarity=0.435 Sum_probs=35.9
Q ss_pred CccccCceEEEecCCCCceEEEEEEeecCCCCeeEEEccCCcceeee
Q 000315 1376 IEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLR 1422 (1678)
Q Consensus 1376 ~~~lvG~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdDgd~E~l~ 1422 (1678)
|.++||.||---|-.+.-||.|+|+. +...++.+|..|||.+..|.
T Consensus 1 ~~~~iG~rV~AkWS~n~yyY~G~I~~-~~~~~kykv~FdDG~~~~v~ 46 (122)
T PF09038_consen 1 GSSFIGLRVFAKWSDNGYYYPGKITS-DKGKNKYKVLFDDGYECRVL 46 (122)
T ss_dssp ---STT-EEEEESSTTSEEEEEEEEE-EETTTEEEEEETTS-EEEEE
T ss_pred CCcccccEEEEEEccCCcccCceEee-cCCCCeEEEEecCCccceec
Confidence 45799999999999777779999999 57789999999999986554
No 47
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.51 E-value=0.48 Score=60.47 Aligned_cols=182 Identities=17% Similarity=0.176 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHhcccc-cccHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCCCCCCCCc
Q 000315 167 VLSSMQTIMIVLLEESE-DIQEDLLVILLSALGRNK---NDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSH 242 (1678)
Q Consensus 167 V~~~m~~IL~~vI~Ese-~vp~~lLd~IL~~l~~~k---~~~a~~LA~~vi~~~~dkL~~~I~q~f~~il~~d~~~~~~~ 242 (1678)
+....+.|.++|+.... .-.+++|..+...|..+. ...|+.--..||+..++.+...+.. ..
T Consensus 106 Ir~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~--------------rp 171 (885)
T KOG2023|consen 106 IRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLT--------------RP 171 (885)
T ss_pred HHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhccc--------------Cc
Confidence 33333444444444432 356888888888875432 2377877788898887666554320 00
Q ss_pred chHHHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHH
Q 000315 243 IDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMS 322 (1678)
Q Consensus 243 ~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~ 322 (1678)
+ --.||-+=.-.++..+.+|..|+..+-..+-....++...-..-.....-+.+|.+|+||..
T Consensus 172 l-----------------~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~ 234 (885)
T KOG2023|consen 172 L-----------------NIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKN 234 (885)
T ss_pred h-----------------HHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHH
Confidence 1 11223333334567899999999999987765543333222222223445679999999999
Q ss_pred HHHHhHHHHhcCCCC--CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHH
Q 000315 323 VLEHVKSCLLTDPSR--ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETV 382 (1678)
Q Consensus 323 ~ve~~~~iL~~~p~~--~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL 382 (1678)
+..+...+|..+|++ .-...|++++..|-.|.||.|-++||+-.-.+|... ++.++|
T Consensus 235 vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqp---i~~~~L 293 (885)
T KOG2023|consen 235 VCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQP---ICKEVL 293 (885)
T ss_pred HHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCc---CcHHHH
Confidence 999999999888763 223589999999999999999999998887766544 555555
No 48
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=94.49 E-value=0.92 Score=51.70 Aligned_cols=101 Identities=18% Similarity=0.094 Sum_probs=66.1
Q ss_pred hhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHH-HHHHHhhhcCCChhHHHHHHHHhHHHHhcCCC--C---CC
Q 000315 266 YLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSV-FSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPS--R---AD 339 (1678)
Q Consensus 266 ~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~-w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~--~---~~ 339 (1678)
.|=..+.....-+|..|..+|-.|+..-+ -++.+ ......-..++++.||..+++++..++...+. . ..
T Consensus 98 ~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~ 172 (228)
T PF12348_consen 98 PLLKKLGDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKS 172 (228)
T ss_dssp HHHHGGG---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence 33333445667788888888888886422 12345 45555567889999999999999888887761 1 11
Q ss_pred --hHHHHHHHHhhhCCChhHHHHHHHHHHHHhhh
Q 000315 340 --APQILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1678)
Q Consensus 340 --~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~ 371 (1678)
...+++.+...+.|++..||.++-.++..+..
T Consensus 173 ~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 173 AFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 24688999999999999999999888877643
No 49
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.34 E-value=0.43 Score=57.17 Aligned_cols=97 Identities=19% Similarity=0.246 Sum_probs=77.5
Q ss_pred ccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCC-----------CC
Q 000315 271 LLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR-----------AD 339 (1678)
Q Consensus 271 L~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~-----------~~ 339 (1678)
+++.+..+|..|++.+| +++--+-.++.+|=.+|...+.+ | ...||+.+++.+-+++..|... ..
T Consensus 36 v~~~~~~vR~~al~cLG-l~~Lld~~~a~~~l~l~~~~~~~--~-~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~ 111 (298)
T PF12719_consen 36 VQSSDPAVRELALKCLG-LCCLLDKELAKEHLPLFLQALQK--D-DEEVKITALKALFDLLLTHGIDIFDSESDNDESVD 111 (298)
T ss_pred hcCCCHHHHHHHHHHHH-HHHHhChHHHHHHHHHHHHHHHh--C-CHHHHHHHHHHHHHHHHHcCchhccchhccCccch
Confidence 45689999999999999 66655557888776666666633 5 9999999999999999988421 12
Q ss_pred hHHHHHHHHhhhCCChhHHHHHHHHHHHHhhh
Q 000315 340 APQILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1678)
Q Consensus 340 ~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~ 371 (1678)
...+++.|..-|.+.++.||..||+.+|.+-.
T Consensus 112 ~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 112 SKSLLKILTKFLDSENPELQAIAVEGLCKLLL 143 (298)
T ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 34688888888988899999999999988654
No 50
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.19 E-value=13 Score=49.64 Aligned_cols=129 Identities=13% Similarity=0.162 Sum_probs=100.1
Q ss_pred ccCCChHHHHHHHH-HHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHh
Q 000315 271 LLTDQLDTRLKAVG-LVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCD 349 (1678)
Q Consensus 271 L~sed~~~Rl~At~-llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~ 349 (1678)
|.+-+...|+.|.+ ++..|..+. ++..=+|++-+.|..| +++++..+=-+...+-..+|. ++-..++.+.+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~--dmssLf~dViK~~~tr----d~ElKrL~ylYl~~yak~~P~--~~lLavNti~k 99 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGE--DMSSLFPDVIKNVATR----DVELKRLLYLYLERYAKLKPE--LALLAVNTIQK 99 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHhccCHH--HHHHHHHHHHh
Confidence 66777888888875 567777654 5777888888888854 788888776666666667773 44456789999
Q ss_pred hhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000315 350 RLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1678)
Q Consensus 350 rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~ 410 (1678)
=|.|+++.+|..|+.+++.+-.. .+-+-++..+..-+-|+.+-||+.|+-+++++|+.
T Consensus 100 Dl~d~N~~iR~~AlR~ls~l~~~---el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l 157 (757)
T COG5096 100 DLQDPNEEIRGFALRTLSLLRVK---ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL 157 (757)
T ss_pred hccCCCHHHHHHHHHHHHhcChH---HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc
Confidence 99999999999987777654433 33345678889999999999999999999999973
No 51
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.18 E-value=26 Score=49.53 Aligned_cols=311 Identities=15% Similarity=0.199 Sum_probs=177.0
Q ss_pred HHHHHHHHHHhhcCCCCCCCh-hHHHHHHHHHHHhccCCCCCCCCChhhH-----HHHHHHHHhhhhhhhcccCCchHHH
Q 000315 75 LVATCICEITRITAPEAPYSD-DVLKDIFQLIVGTFSGLKDTGGPSFGRR-----VVILETLAKYRSCVVMLDLECDELV 148 (1678)
Q Consensus 75 ~vAcCLadIlRI~APdaPytd-~qLkdIF~l~v~qf~~L~d~~~p~f~~~-----~~lLe~lA~vks~vl~~DL~~~~Li 148 (1678)
-.+.|=.|-.++ -|+-|+-. ..=.+.+.+|...|..+-+..+|.+.|. ..+...++.-+..++++- ++.
T Consensus 789 ~~~~~~~ds~~l-e~~~~~~~~~~n~~~~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~----eI~ 863 (1702)
T KOG0915|consen 789 NYTALGTDSNFL-EEKTDTEEDKVNDTRETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLK----EIQ 863 (1702)
T ss_pred hhhhcccchhhc-ccccchhhcccCCccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccH----HHH
Confidence 344455666666 33333321 1123456666666665656677877765 233445555666665543 333
Q ss_pred HHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccc-cccHHHHHHHHHHhcC--------------------CCcH--HH
Q 000315 149 NEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESE-DIQEDLLVILLSALGR--------------------NKND--TA 205 (1678)
Q Consensus 149 ~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese-~vp~~lLd~IL~~l~~--------------------~k~~--~a 205 (1678)
+-|..|+. -++++.+.|.+ .=|.-|-+=++ ..-.++++-++..|.. +++. ..
T Consensus 864 -~aF~~~Ls-d~dEf~QDvAs---rGlglVYelgd~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~ 938 (1702)
T KOG0915|consen 864 -EAFSHLLS-DNDEFSQDVAS---RGLGLVYELGDSSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGK 938 (1702)
T ss_pred -HHHHHHhc-ccHHHHHHHHh---cCceEEEecCCchhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCc
Confidence 66666654 22223222221 11111111111 2333444444444311 1111 11
Q ss_pred HHHHHHHHHHhhhhhHHHHH-HHHHHhhcC------C-CC-C------C--CCcch--HHHHHHHHHhhCchhhhhhhhh
Q 000315 206 RRLAMNVIEQCAGKLEAGIK-QFLVSSMSG------D-SR-P------G--HSHID--YHEVIYDVYRCSPQILSGVVPY 266 (1678)
Q Consensus 206 ~~LA~~vi~~~~dkL~~~I~-q~f~~il~~------d-~~-~------~--~~~~~--~h~Li~eL~~~~P~lL~~ViP~ 266 (1678)
-.-=+++|+-.+|-=||.+- +|+ +.-.. . +. . . ...+. +-.||-.|||+-
T Consensus 939 isTYKELc~LASdl~qPdLVYKFM-~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~---------- 1007 (1702)
T KOG0915|consen 939 ISTYKELCNLASDLGQPDLVYKFM-QLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQ---------- 1007 (1702)
T ss_pred chHHHHHHHHHhhcCChHHHHHHH-HHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhc----------
Confidence 22236889888888888764 444 22211 0 00 0 0 01111 235666666542
Q ss_pred hcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCC---CChHHH
Q 000315 267 LTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR---ADAPQI 343 (1678)
Q Consensus 267 Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~---~~~~ei 343 (1678)
=..+..++-.-|-.-+-++.++.....+-+-+++.+.|.-..++.=.||.+++-+..++|..+|.. +...++
T Consensus 1008 -----yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpel 1082 (1702)
T KOG0915|consen 1008 -----YDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPEL 1082 (1702)
T ss_pred -----cCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 235667777777777777777654445566899999999999999999999999999999888742 334578
Q ss_pred HHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCC------C-CHHHHHH-----HHHhhccCChhHHHHHHHHHHHHHHHH
Q 000315 344 LTALCDRLLDFDENVRKQVVAVICDVACHALNS------I-PVETVKL-----VAERLRDKSVLVKRYTMERLADIFRGC 411 (1678)
Q Consensus 344 i~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~------V-~~elL~~-----LaeR~RDKK~~VR~eAm~~La~LY~~~ 411 (1678)
+.++-+-.=|-.|.||.|+=++...++.-.... . ..+++.. +.+-+--|-..||+-+|.+|.+|-+.+
T Consensus 1083 w~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kss 1162 (1702)
T KOG0915|consen 1083 WEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSS 1162 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhc
Confidence 888888888999999998766655554322211 1 1133332 333444566799999999999998875
No 52
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=93.84 E-value=0.085 Score=52.76 Aligned_cols=106 Identities=12% Similarity=0.070 Sum_probs=56.4
Q ss_pred hhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchh-hcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCC--
Q 000315 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE-QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRAD-- 339 (1678)
Q Consensus 263 ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~-~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~-- 339 (1678)
++|.|-.-|...+..+|..|..+|+.|.......... .....+..++.-++|.++.||..++.+..++....+....
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 6677777777888999999999999988762100000 0113444444444555555555555555554433221000
Q ss_pred -hHHHHHHHHhhhCCChhHHHHHHHHHHHH
Q 000315 340 -APQILTALCDRLLDFDENVRKQVVAVICD 368 (1678)
Q Consensus 340 -~~eii~~L~~rL~D~DEkVR~aaV~ai~~ 368 (1678)
...+++.|...|.+.|..||..++.+++.
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~ 117 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSN 117 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 01234444555555555555555554443
No 53
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=93.71 E-value=6.2 Score=50.17 Aligned_cols=298 Identities=15% Similarity=0.189 Sum_probs=169.2
Q ss_pred HHHHHHhhcCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHH-HHHHHhhhhhh------hcccCCchHHHHHH
Q 000315 79 CICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVI-LETLAKYRSCV------VMLDLECDELVNEM 151 (1678)
Q Consensus 79 CLadIlRI~APdaPytd~qLkdIF~l~v~qf~~L~d~~~p~f~~~~~l-Le~lA~vks~v------l~~DL~~~~Li~~l 151 (1678)
.|+.|+|+.+----|...+.+.+|--|..-|.+ .++|..|++|+ ++-|+.+--=| +|-|+.
T Consensus 44 lls~l~yll~tge~f~e~~at~lff~i~KlFQh----kd~~Lrq~VY~aIkelS~~tedvlm~tssiMkD~~-------- 111 (898)
T COG5240 44 LLSNLFYLLSTGELFPEATATNLFFAILKLFQH----KDLYLRQCVYSAIKELSKLTEDVLMGTSSIMKDLN-------- 111 (898)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHhhcchhhhHHHHHHHHhhc--------
Confidence 367889998888888888888888877777753 67889999886 45555432222 233332
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHH-HhcC---CCcH----HHHHH---HHHHHHHhhhhh
Q 000315 152 YSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLS-ALGR---NKND----TARRL---AMNVIEQCAGKL 220 (1678)
Q Consensus 152 F~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~vp~~lLd~IL~-~l~~---~k~~----~a~~L---A~~vi~~~~dkL 220 (1678)
++-+..+......-|..||++.-. +. ..-+|. .|.. .... .||.| +.+.+.+-...-
T Consensus 112 ---------~g~~~~~kp~AiRsL~~Vid~~tv-~~--~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~ 179 (898)
T COG5240 112 ---------GGVPDDVKPMAIRSLFSVIDGETV-YD--FERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNET 179 (898)
T ss_pred ---------cCCccccccHHHHHHHHhcCcchh-hh--HHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHH
Confidence 222333444444445555554221 11 111221 1110 0111 22322 111111111111
Q ss_pred HHHHHHHHHHh--hcCC-CC-CCCCcc-hHH--HHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCC
Q 000315 221 EAGIKQFLVSS--MSGD-SR-PGHSHI-DYH--EVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP 293 (1678)
Q Consensus 221 ~~~I~q~f~~i--l~~d-~~-~~~~~~-~~h--~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~ 293 (1678)
|.+|... .+. ..|. +. +....+ ++| .|+|++-+..--.++..+..+-..+...|-.--.+-++.+..++-.
T Consensus 180 qeav~~l-~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~- 257 (898)
T COG5240 180 QEAVLDL-KQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDKMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKE- 257 (898)
T ss_pred HHHHhhH-hhCcCccCCcccCCCCChHHHHHHHHHHHHHhcccHHHHHHHHHHhhcccccccchhheehHHHHHHHHHh-
Confidence 2222110 000 0111 11 111222 455 6799999988777777777766666555544445555666666654
Q ss_pred CCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh
Q 000315 294 GSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA 373 (1678)
Q Consensus 294 ~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~ 373 (1678)
.+++..+..+..+.||+- +-..|-++....+-.+-..|-......+.+..|+-.|.-+.---|.+|...+.++|...
T Consensus 258 n~q~~~q~rpfL~~wls~---k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~ 334 (898)
T COG5240 258 NSQALLQLRPFLNSWLSD---KFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKY 334 (898)
T ss_pred ChHHHHHHHHHHHHHhcC---cchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhC
Confidence 457778888888999875 44455555444443332333222345577889999999999999999999999999988
Q ss_pred cCCCCHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 000315 374 LNSIPVETVKLVAERLRDKSVLVKRYTMERLAD 406 (1678)
Q Consensus 374 l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~ 406 (1678)
++.|..-- ..+-..+-|-+..+-.+||++|-+
T Consensus 335 P~kv~vcN-~evEsLIsd~Nr~IstyAITtLLK 366 (898)
T COG5240 335 PQKVSVCN-KEVESLISDENRTISTYAITTLLK 366 (898)
T ss_pred CceeeecC-hhHHHHhhcccccchHHHHHHHHH
Confidence 88775421 123455677788888888887754
No 54
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.66 E-value=0.63 Score=51.60 Aligned_cols=86 Identities=20% Similarity=0.176 Sum_probs=71.4
Q ss_pred HHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHH
Q 000315 247 EVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEH 326 (1678)
Q Consensus 247 ~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~ 326 (1678)
..+-.|..-.|.++-..+|.|..-|..+++.+|..|...|.+++.. ++.+-.+.++..++.-..|.++.||.....+
T Consensus 10 ~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~ 86 (178)
T PF12717_consen 10 IALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DMIKVKGQLFSRILKLLVDENPEIRSLARSF 86 (178)
T ss_pred HHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---CceeehhhhhHHHHHHHcCCCHHHHHHHHHH
Confidence 3455666777899999999999999999999999999999999875 5777778888889999999999999988888
Q ss_pred hHHHHhc-CC
Q 000315 327 VKSCLLT-DP 335 (1678)
Q Consensus 327 ~~~iL~~-~p 335 (1678)
...++.. +|
T Consensus 87 ~~e~~~~~~~ 96 (178)
T PF12717_consen 87 FSELLKKRNP 96 (178)
T ss_pred HHHHHHhccc
Confidence 8887776 44
No 55
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.58 E-value=1.2 Score=60.29 Aligned_cols=151 Identities=15% Similarity=0.180 Sum_probs=107.7
Q ss_pred hHHHHHHHHHh---hCc--hhhhhhhhhhcccc----cCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcC
Q 000315 244 DYHEVIYDVYR---CSP--QILSGVVPYLTGEL----LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTD 314 (1678)
Q Consensus 244 ~~h~Li~eL~~---~~P--~lL~~ViP~Le~EL----~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D 314 (1678)
+.|++|..+.. ..+ .+|....|.+..-- ...+++++..||-.||+|.-- ++.|-..|-+++-.-+.+.
T Consensus 896 d~~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i-Sa~fces~l~llftimeks-- 972 (1251)
T KOG0414|consen 896 DLADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI-SAEFCESHLPLLFTIMEKS-- 972 (1251)
T ss_pred hHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcC--
Confidence 46666665543 233 56666777776544 345699999999999999865 3456555544444444432
Q ss_pred CChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCCh
Q 000315 315 RIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSV 394 (1678)
Q Consensus 315 ~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~ 394 (1678)
.+|-||.-+|=.++++...-|.. +......|-.||+|.+..||..|+.++.-+.....-.|-. .+..+|--+-|-..
T Consensus 973 p~p~IRsN~VvalgDlav~fpnl--ie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKG-ql~eMA~cl~D~~~ 1049 (1251)
T KOG0414|consen 973 PSPRIRSNLVVALGDLAVRFPNL--IEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKG-QLSEMALCLEDPNA 1049 (1251)
T ss_pred CCceeeecchheccchhhhcccc--cchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcc-cHHHHHHHhcCCcH
Confidence 57899999999999998887753 4467899999999999999999999998776655433332 24566777888887
Q ss_pred hHHHHH
Q 000315 395 LVKRYT 400 (1678)
Q Consensus 395 ~VR~eA 400 (1678)
.||.-|
T Consensus 1050 ~IsdlA 1055 (1251)
T KOG0414|consen 1050 EISDLA 1055 (1251)
T ss_pred HHHHHH
Confidence 766544
No 56
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.23 E-value=0.22 Score=50.07 Aligned_cols=66 Identities=20% Similarity=0.169 Sum_probs=50.0
Q ss_pred HHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCC---CHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000315 341 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI---PVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1678)
Q Consensus 341 ~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V---~~elL~~LaeR~RDKK~~VR~eAm~~La~L 407 (1678)
.+|++.+..++.|.|.+||..||+++..++...-..+ =.+++..|..++.|-...||..| +.|-++
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRL 94 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHH
Confidence 4788888888999999999999999888876443332 23567788888899998988877 555544
No 57
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=93.14 E-value=9.5 Score=51.00 Aligned_cols=103 Identities=17% Similarity=0.129 Sum_probs=86.9
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHH-HH
Q 000315 304 VFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE-TV 382 (1678)
Q Consensus 304 ~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~e-lL 382 (1678)
.-+.|++=+.|.++.||...+.....+ +.......++..+.+++.|++.-||..|+-+|..+-.-..+.++.. ..
T Consensus 93 avNti~kDl~d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~ 168 (757)
T COG5096 93 AVNTIQKDLQDPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLI 168 (757)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHH
Confidence 456788899999999999999887642 1223456788999999999999999999999988776777777777 77
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000315 383 KLVAERLRDKSVLVKRYTMERLADIFRG 410 (1678)
Q Consensus 383 ~~LaeR~RDKK~~VR~eAm~~La~LY~~ 410 (1678)
..+.+.+.|-.+.|=..|+.+|..++..
T Consensus 169 ~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 169 DILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 7788999999999999999999999986
No 58
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.99 E-value=12 Score=48.58 Aligned_cols=106 Identities=19% Similarity=0.248 Sum_probs=79.3
Q ss_pred HHHHhhhcCCChhHHHHHHHHhHHHHhcC---CCC-----CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCC
Q 000315 306 SEFLKRLTDRIVAVRMSVLEHVKSCLLTD---PSR-----ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI 377 (1678)
Q Consensus 306 ~~fL~R~~D~s~~VR~~~ve~~~~iL~~~---p~~-----~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V 377 (1678)
..|..=..--+-..|..+++.|++++..- |.. ....+++.-|.+||.|+-.-+|..|++++..+--.....+
T Consensus 302 ~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~ 381 (1128)
T COG5098 302 EHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTV 381 (1128)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccccc
Confidence 34444445567788999999999987642 111 1235788999999999999999988888755433222222
Q ss_pred --CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHH
Q 000315 378 --PVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1678)
Q Consensus 378 --~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~ 411 (1678)
-.++.+.++.|+-||..-||+.||..+++|.-.+
T Consensus 382 ~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~H 417 (1128)
T COG5098 382 GRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRH 417 (1128)
T ss_pred chHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcC
Confidence 3468899999999999999999999999987755
No 59
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.54 E-value=2.4 Score=54.64 Aligned_cols=110 Identities=24% Similarity=0.289 Sum_probs=88.5
Q ss_pred HHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHH
Q 000315 251 DVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSC 330 (1678)
Q Consensus 251 eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~i 330 (1678)
+.-...|+-|...++.|++-|+...+-.|.+|.+.+..+|-.+ +-+.......-..-.+|..|++.-||...++.+..+
T Consensus 335 qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~-sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkL 413 (1128)
T COG5098 335 QMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLN-SKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKL 413 (1128)
T ss_pred hhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCc-ccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 3456678888999999999999999999999999999999875 367777778888888999999999999999999999
Q ss_pred HhcCCCCCC-----------------hHHHH---HHHHhhhCCChhHHHHH
Q 000315 331 LLTDPSRAD-----------------APQIL---TALCDRLLDFDENVRKQ 361 (1678)
Q Consensus 331 L~~~p~~~~-----------------~~eii---~~L~~rL~D~DEkVR~a 361 (1678)
|+.||-..+ +.++. +.+++++.|.+..|-..
T Consensus 414 L~~HPF~~~h~~~l~~~~wek~L~~~E~qlNslk~~~qe~l~D~E~Eveqd 464 (1128)
T COG5098 414 LMRHPFASEHGSQLRLTLWEKNLGSAENQLNSLKSGLQETLCDGEKEVEQD 464 (1128)
T ss_pred HhcCChhhhccchhhhHHHHhhcchhHhHhhccchhhhccccchHHhhhhh
Confidence 999984211 01221 35566778887777644
No 60
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=91.43 E-value=1.1e+02 Score=45.87 Aligned_cols=141 Identities=11% Similarity=0.103 Sum_probs=92.6
Q ss_pred hhhcccccCCChHHHHHHHHHHHHhhcCCCCCch-----hhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCC-CC
Q 000315 265 PYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANN-----EQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPS-RA 338 (1678)
Q Consensus 265 P~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a-----~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~-~~ 338 (1678)
+.|-.-|...+.+++..|+..|..+-.... +.. .---+..-.||+. -+..+|...+.....+-..+.. +.
T Consensus 407 k~LV~LL~~~~~evQ~~Av~aL~~L~~~~~-e~~~aIi~~ggIp~LV~LL~s---~s~~iQ~~A~~~L~nLa~~ndenr~ 482 (2102)
T PLN03200 407 KVLVGLITMATADVQEELIRALSSLCCGKG-GLWEALGGREGVQLLISLLGL---SSEQQQEYAVALLAILTDEVDESKW 482 (2102)
T ss_pred hhhhhhhccCCHHHHHHHHHHHHHHhCCCH-HHHHHHHHcCcHHHHHHHHcC---CCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 334445666778999999999988775532 110 1112344455554 4678888777776654333321 10
Q ss_pred --ChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcC---CC-CHHHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 000315 339 --DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN---SI-PVETVKLVAERLRDKSVLVKRYTMERLADIFR 409 (1678)
Q Consensus 339 --~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~---~V-~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~ 409 (1678)
.....+..|...|..++.++|.+||-+++.++...-. .| ....+..|.+.+++....+|+.|...|++|-.
T Consensus 483 aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~ 559 (2102)
T PLN03200 483 AITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVR 559 (2102)
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 0013457888899999999999999999998873211 12 22345567778888889999999999998854
No 61
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=91.31 E-value=0.29 Score=38.80 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=22.8
Q ss_pred HHHHHHhhhCCChhHHHHHHHHHHHHhhh
Q 000315 343 ILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1678)
Q Consensus 343 ii~~L~~rL~D~DEkVR~aaV~ai~~la~ 371 (1678)
|++.|...+.|++++||.+|+.+++.++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 46677888889999999999888887764
No 62
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.30 E-value=6.4 Score=51.83 Aligned_cols=259 Identities=19% Similarity=0.180 Sum_probs=143.9
Q ss_pred hhhhcCCCcchHHHHHHHHHHH----HhhcCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhh-hh
Q 000315 62 PVLLKHQDKDVKLLVATCICEI----TRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYR-SC 136 (1678)
Q Consensus 62 ~~LL~HkD~~Vr~~vAcCLadI----lRI~APdaPytd~qLkdIF~l~v~qf~~L~d~~~p~f~~~~~lLe~lA~vk-s~ 136 (1678)
...|.||..-|-.=+|--++.+ -|+.+| .. -+.++|++. |....--.++-+|..+|-.. .-
T Consensus 251 ~s~l~~K~emV~~EaArai~~l~~~~~r~l~p----av----s~Lq~flss------p~~~lRfaAvRtLnkvAm~~P~~ 316 (865)
T KOG1078|consen 251 ESCLRHKSEMVIYEAARAIVSLPNTNSRELAP----AV----SVLQLFLSS------PKVALRFAAVRTLNKVAMKHPQA 316 (865)
T ss_pred HHHHhchhHHHHHHHHHHHhhccccCHhhcch----HH----HHHHHHhcC------cHHHHHHHHHHHHHHHHHhCCcc
Confidence 3456777777766666555443 244455 22 233344332 22222122344555555322 23
Q ss_pred hhcccCCchHHHHHH--------HHHHHHhhcCCChhhHHHHHHHHHHHH---hcccccccHHHHHHHHHHhcCCCcHHH
Q 000315 137 VVMLDLECDELVNEM--------YSTFFAVASDDHPESVLSSMQTIMIVL---LEESEDIQEDLLVILLSALGRNKNDTA 205 (1678)
Q Consensus 137 vl~~DL~~~~Li~~l--------F~~ff~~v~~~~~~~V~~~m~~IL~~v---I~Ese~vp~~lLd~IL~~l~~~k~~~a 205 (1678)
|.+|.++-+.||... ..+++.. +...+|...|-.|-+.+ =+|.--|--+-+..+...+.
T Consensus 317 v~~cN~elE~lItd~NrsIat~AITtLLKT---G~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp------- 386 (865)
T KOG1078|consen 317 VTVCNLDLESLITDSNRSIATLAITTLLKT---GTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFP------- 386 (865)
T ss_pred ccccchhHHhhhcccccchhHHHHHHHHHh---cchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhcc-------
Confidence 344555434444332 2233332 33555666666554444 33333343333333333332
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHH
Q 000315 206 RRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGL 285 (1678)
Q Consensus 206 ~~LA~~vi~~~~dkL~~~I~q~f~~il~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~l 285 (1678)
+....+-.|+.++|.++++. +-.....+.|..+-+..|+.=-.-+-.|..-. +|=+.+..||+.
T Consensus 387 -------------~k~~~~m~FL~~~Lr~eGg~-e~K~aivd~Ii~iie~~pdsKe~~L~~LCefI--EDce~~~i~~rI 450 (865)
T KOG1078|consen 387 -------------RKHTVMMNFLSNMLREEGGF-EFKRAIVDAIIDIIEENPDSKERGLEHLCEFI--EDCEFTQIAVRI 450 (865)
T ss_pred -------------HHHHHHHHHHHHHHHhccCc-hHHHHHHHHHHHHHHhCcchhhHHHHHHHHHH--HhccchHHHHHH
Confidence 23344556777777654321 11223567777777888875444333333322 456678899999
Q ss_pred HHHhhcCCCCCchhhcHHHHHHH-HhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHH
Q 000315 286 VGDLFAVPGSANNEQFHSVFSEF-LKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVA 364 (1678)
Q Consensus 286 lG~mfs~~~s~~a~~y~~~w~~f-L~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ 364 (1678)
|+.+--. | -....|+-|-.| .+|..=-+..||.+.|.++..|....+.. .+-|...|.++++|.|+.||-.|--
T Consensus 451 LhlLG~E-g--P~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l--~~sI~vllkRc~~D~DdevRdrAtf 525 (865)
T KOG1078|consen 451 LHLLGKE-G--PKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVL--LPSILVLLKRCLNDSDDEVRDRATF 525 (865)
T ss_pred HHHHhcc-C--CCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCc--cccHHHHHHHHhcCchHHHHHHHHH
Confidence 9866543 2 123445555544 46777778999999999999999666543 3468899999999999999988533
Q ss_pred H
Q 000315 365 V 365 (1678)
Q Consensus 365 a 365 (1678)
.
T Consensus 526 ~ 526 (865)
T KOG1078|consen 526 Y 526 (865)
T ss_pred H
Confidence 3
No 63
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.18 E-value=8.8 Score=50.76 Aligned_cols=165 Identities=18% Similarity=0.241 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHhcc-------cccccHHHHHH-HH---HHhcCCCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCC
Q 000315 167 VLSSMQTIMIVLLEE-------SEDIQEDLLVI-LL---SALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGD 235 (1678)
Q Consensus 167 V~~~m~~IL~~vI~E-------se~vp~~lLd~-IL---~~l~~~k~~~a~~LA~~vi~~~~dkL~~~I~q~f~~il~~d 235 (1678)
+...+..||..++.- ...||...|.+ || ..++++.. .++|.|.--+.|.++..=.
T Consensus 220 l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~------------daSd~M~DiLaqvatntds-- 285 (866)
T KOG1062|consen 220 LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDA------------DASDLMNDILAQVATNTDS-- 285 (866)
T ss_pred HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCc------------cHHHHHHHHHHHHHhcccc--
Confidence 444445555555543 12366666663 22 33455532 3345555556666554211
Q ss_pred CCCCCCcc-hHHHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCC------------------CC
Q 000315 236 SRPGHSHI-DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG------------------SA 296 (1678)
Q Consensus 236 ~~~~~~~~-~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~------------------s~ 296 (1678)
..+.+. -+|+-+..|+.+- .+..+|.+|+..||+-+..++ .+
T Consensus 286 --skN~GnAILYE~V~TI~~I~-----------------~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~ 346 (866)
T KOG1062|consen 286 --SKNAGNAILYECVRTIMDIR-----------------SNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPT 346 (866)
T ss_pred --cccchhHHHHHHHHHHHhcc-----------------CCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcH
Confidence 111111 1455555555442 345566666666666666553 24
Q ss_pred chhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhh
Q 000315 297 NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1678)
Q Consensus 297 ~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~ 371 (1678)
.+++|+.+--+ ...|.++.||...+|..-.++..+- ...+++.|.+-|.-.|+.+|...+..|+.+|-
T Consensus 347 avqrHr~tIle---CL~DpD~SIkrralELs~~lvn~~N----v~~mv~eLl~fL~~~d~~~k~~~as~I~~laE 414 (866)
T KOG1062|consen 347 AVQRHRSTILE---CLKDPDVSIKRRALELSYALVNESN----VRVMVKELLEFLESSDEDFKADIASKIAELAE 414 (866)
T ss_pred HHHHHHHHHHH---HhcCCcHHHHHHHHHHHHHHhcccc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 67888887654 5679999999999999877665432 45677777777777799999998888887664
No 64
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=91.18 E-value=12 Score=44.89 Aligned_cols=106 Identities=18% Similarity=0.245 Sum_probs=75.5
Q ss_pred HHHHHHHhh-hcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhh-hcCCC---
Q 000315 303 SVFSEFLKR-LTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACH-ALNSI--- 377 (1678)
Q Consensus 303 ~~w~~fL~R-~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~-~l~~V--- 377 (1678)
.++..++-. ..=.++.||..-+++.+-+-+-+. ..+.+-+.-+...+..-++.||..|+++++|+... .+..+
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~--~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~ 103 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK--ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSE 103 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccch
Confidence 667776622 233467999999999987555443 33455555555555444999999999999999862 22222
Q ss_pred C--------HHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000315 378 P--------VETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1678)
Q Consensus 378 ~--------~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~ 410 (1678)
+ ..+++.+..-+.+-...||..|.+++++|+-.
T Consensus 104 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 104 SDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred hccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 2 24667777777777889999999999998875
No 65
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=90.28 E-value=0.16 Score=45.00 Aligned_cols=52 Identities=23% Similarity=0.206 Sum_probs=34.2
Q ss_pred hhHHHHHHHHhHHHHhcCCC--CCChHHHHHHHHhhhCCChhHHHHHHHHHHHH
Q 000315 317 VAVRMSVLEHVKSCLLTDPS--RADAPQILTALCDRLLDFDENVRKQVVAVICD 368 (1678)
Q Consensus 317 ~~VR~~~ve~~~~iL~~~p~--~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~ 368 (1678)
|.||...+...+.+....+. .....+++..|...|.|+++.||.+|+.+++.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 46777777777663332221 11234777888888888888888888777754
No 66
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=90.28 E-value=3.4 Score=54.31 Aligned_cols=128 Identities=17% Similarity=0.262 Sum_probs=77.4
Q ss_pred Cchhhhhhhhhhccccc----CCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhc---CCChhHHHHHHHHhH
Q 000315 256 SPQILSGVVPYLTGELL----TDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLT---DRIVAVRMSVLEHVK 328 (1678)
Q Consensus 256 ~P~lL~~ViP~Le~EL~----sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~---D~s~~VR~~~ve~~~ 328 (1678)
.+.+..-+++.|..+|. ..+...++.+.+.||.| +. |.+...++.-.. +.+..||++++.+..
T Consensus 480 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~-g~---------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr 549 (618)
T PF01347_consen 480 SRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL-GH---------PESIPVLLPYIEGKEEVPHFIRVAAIQALR 549 (618)
T ss_dssp -SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTT
T ss_pred chhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc-CC---------chhhHHHHhHhhhccccchHHHHHHHHHHH
Confidence 45556667777777666 45779999999999987 22 223344443333 559999999999988
Q ss_pred HHHhcCCCCCChHHHHHHHHhhhCCChh--HHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhh-ccCChhHHHHHHHHH
Q 000315 329 SCLLTDPSRADAPQILTALCDRLLDFDE--NVRKQVVAVICDVACHALNSIPVETVKLVAERL-RDKSVLVKRYTMERL 404 (1678)
Q Consensus 329 ~iL~~~p~~~~~~eii~~L~~rL~D~DE--kVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~-RDKK~~VR~eAm~~L 404 (1678)
.+....| ..+.+.|..-+.|..+ .||.+|+.++-. ..-+..+|..++..+ .|+...|+......|
T Consensus 550 ~~~~~~~-----~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~------~~P~~~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 550 RLAKHCP-----EKVREILLPIFMNTTEDPEVRIAAYLILMR------CNPSPSVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp TGGGT-H-----HHHHHHHHHHHH-TTS-HHHHHHHHHHHHH------T---HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred HHhhcCc-----HHHHHHHHHHhcCCCCChhHHHHHHHHHHh------cCCCHHHHHHHHHHHhhCchHHHHHHHHHhc
Confidence 7644333 2566666666666544 399997666522 113556788888877 778788887665543
No 67
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=89.88 E-value=0.54 Score=46.94 Aligned_cols=100 Identities=14% Similarity=0.102 Sum_probs=72.4
Q ss_pred HHhhhcCCChhHHHHHHHHhHHHHhcCCCC---CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcC----CCCHH
Q 000315 308 FLKRLTDRIVAVRMSVLEHVKSCLLTDPSR---ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN----SIPVE 380 (1678)
Q Consensus 308 fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~---~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~----~V~~e 380 (1678)
++.-..|.++.+|...+.+...+-...|.. -....+++.|...|.|.+.+||..++.+++.++..... .+...
T Consensus 12 l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 91 (120)
T cd00020 12 LVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAG 91 (120)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCC
Confidence 333444556888888888877755543321 00125678888899999999999999999999764321 12233
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHH
Q 000315 381 TVKLVAERLRDKSVLVKRYTMERLADI 407 (1678)
Q Consensus 381 lL~~LaeR~RDKK~~VR~eAm~~La~L 407 (1678)
++..+.+.+.+....||+.|+..|+.|
T Consensus 92 ~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 92 GVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 677888999999999999999999876
No 68
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=89.78 E-value=0.57 Score=55.36 Aligned_cols=50 Identities=22% Similarity=0.308 Sum_probs=40.8
Q ss_pred CccccCceEEEecCCCCceEEEEEEeecCCCCeeEEEcc-CCcceeeecCc
Q 000315 1376 IEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYD-DEDVEVLRLDK 1425 (1678)
Q Consensus 1376 ~~~lvG~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~Yd-Dgd~E~l~L~~ 1425 (1678)
-..=||-+|.-.|-.|..||.++|+..+...+.-.|+|. -|..|.+.|..
T Consensus 67 ~~WkvGd~C~A~~s~Dg~~Y~A~I~~i~~~~~~~~V~f~gYgn~e~v~l~d 117 (264)
T PF06003_consen 67 KKWKVGDKCMAVYSEDGQYYPATIESIDEEDGTCVVVFTGYGNEEEVNLSD 117 (264)
T ss_dssp T---TT-EEEEE-TTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGG
T ss_pred cCCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEcccCCeEeeehhh
Confidence 355699999999999999999999999999999999995 58888888864
No 69
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.58 E-value=31 Score=48.90 Aligned_cols=352 Identities=15% Similarity=0.226 Sum_probs=166.9
Q ss_pred HHHHHHHHHhhcCCCCchhhHHhHHHHHHHhcch---------------hhhcCCCcchHHHHHHHH--HHHHhhcCCCC
Q 000315 29 LLKQAATCLSELNQSPPASILEAMQPFLNAIVQP---------------VLLKHQDKDVKLLVATCI--CEITRITAPEA 91 (1678)
Q Consensus 29 rL~~L~~~Ls~~dQ~~~~~~~~sl~~~~~~Lv~~---------------~LL~HkD~~Vr~~vAcCL--adIlRI~APda 91 (1678)
-|++|-=-|....=||..-..+++..+-+.|+.. =|=+=.++.-|+--|||| +|++|= .
T Consensus 995 ~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g----~ 1070 (1702)
T KOG0915|consen 995 YLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQG----R 1070 (1702)
T ss_pred HHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcC----C
Confidence 3444444444544444444455555555444433 333448889888889996 599985 6
Q ss_pred CCCh--hHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhcccCC----chHHHHHH--------------
Q 000315 92 PYSD--DVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLE----CDELVNEM-------------- 151 (1678)
Q Consensus 92 Pytd--~qLkdIF~l~v~qf~~L~d~~~p~f~~~~~lLe~lA~vks~vl~~DL~----~~~Li~~l-------------- 151 (1678)
|+++ +.|.+|+..+|+....+.+. --.-..-....|++ .||-+||.. +.+.+.-+
T Consensus 1071 ~~~~~~e~lpelw~~~fRvmDDIKEs---VR~aa~~~~~~lsK--l~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~ 1145 (1702)
T KOG0915|consen 1071 PFDQVKEKLPELWEAAFRVMDDIKES---VREAADKAARALSK--LCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVN 1145 (1702)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH--HHhhhcccCCcccHHHHHHHHHHHHhccCcccchH
Confidence 6665 56777777777665433321 10111222333333 466666652 12222111
Q ss_pred ------HHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHh----------------------------
Q 000315 152 ------YSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSAL---------------------------- 197 (1678)
Q Consensus 152 ------F~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~vp~~lLd~IL~~l---------------------------- 197 (1678)
..++.+++ ..-++.+..+..+..-.+++-.+.+.+.||..+--.+
T Consensus 1146 evr~~si~tl~dl~-Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~c 1224 (1702)
T KOG0915|consen 1146 EVRRFSIGTLMDLA-KSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKC 1224 (1702)
T ss_pred HHHHHHHHHHHHHH-HhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHH
Confidence 12222222 1112334444444444555555555555555433221
Q ss_pred ------------------------cCCCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCCCCCCCCc-chHH-HHHHH
Q 000315 198 ------------------------GRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSH-IDYH-EVIYD 251 (1678)
Q Consensus 198 ------------------------~~~k~~~a~~LA~~vi~~~~dkL~~~I~q~f~~il~~d~~~~~~~-~~~h-~Li~e 251 (1678)
+-+....+..+-..+..+|..-|.||.-.||.-++.|-.. .++. .++. .-.--
T Consensus 1225 i~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~d-RNesv~kafAsAmG~ 1303 (1702)
T KOG0915|consen 1225 INYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKD-RNESVRKAFASAMGY 1303 (1702)
T ss_pred HHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhcccc-ccHHHHHHHHHHHHH
Confidence 0011113344444444555555666666666555544211 1111 1111 11111
Q ss_pred HHhh-CchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHH--HHHhhhcCCChhHHHHHHHHhH
Q 000315 252 VYRC-SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFS--EFLKRLTDRIVAVRMSVLEHVK 328 (1678)
Q Consensus 252 L~~~-~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~--~fL~R~~D~s~~VR~~~ve~~~ 328 (1678)
|.++ .|+=-...+-.+-.++..+++..+..+..++.+ |+....+....|.+.+- .||.++.+ .-+.=-.|-+.--
T Consensus 1304 L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~-Ian~s~e~Lkn~asaILPLiFLa~~ee-~Ka~q~Lw~dvW~ 1381 (1702)
T KOG0915|consen 1304 LAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISN-IANYSQEMLKNYASAILPLIFLAMHEE-EKANQELWNDVWA 1381 (1702)
T ss_pred HHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHH-HHHhhHHHHHhhHHHHHHHHHHHHhHH-HHHHHHHHHHHHH
Confidence 2222 443333334444445555666666777777776 55443344444444443 55555555 1111111111111
Q ss_pred HHHhcCCCC--CChHHHHHHHHhhh-CCChhHHHHHHHHHHHHhhhhhcCCCCHHH--------HHHHHHhhccCC
Q 000315 329 SCLLTDPSR--ADAPQILTALCDRL-LDFDENVRKQVVAVICDVACHALNSIPVET--------VKLVAERLRDKS 393 (1678)
Q Consensus 329 ~iL~~~p~~--~~~~eii~~L~~rL-~D~DEkVR~aaV~ai~~la~~~l~~V~~el--------L~~LaeR~RDKK 393 (1678)
.+....-.+ -...+++..+|+-. .+.-.++|.++.+++..++......+|.+. +.++..|+=|=|
T Consensus 1382 e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~~p~ilkl~~~ll~~L~GRiwdGK 1457 (1702)
T KOG0915|consen 1382 ELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAPIPVILKLALSLLDTLNGRIWDGK 1457 (1702)
T ss_pred HhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCChHHHHHHHHHHHHHhhccccccH
Confidence 111000000 01235666666654 455599999999999888887777777543 345666665443
No 70
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=89.50 E-value=2.6 Score=42.18 Aligned_cols=87 Identities=21% Similarity=0.256 Sum_probs=70.2
Q ss_pred HHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCC-CCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHH
Q 000315 302 HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDP-SRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE 380 (1678)
Q Consensus 302 ~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p-~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~e 380 (1678)
..+|+.++.-.+|..++||..-+....+.+.++. .......|+..+..-|.|+|.=|=+.||++++.++...+ .+
T Consensus 2 ~~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p----~~ 77 (92)
T PF10363_consen 2 RETLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP----DE 77 (92)
T ss_pred hHHHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh----HH
Confidence 3678999999999999999999999999888765 334456788899999999999999999999999887653 34
Q ss_pred HHHHHHHhhccC
Q 000315 381 TVKLVAERLRDK 392 (1678)
Q Consensus 381 lL~~LaeR~RDK 392 (1678)
++..|.++-.|+
T Consensus 78 vl~~L~~~y~~~ 89 (92)
T PF10363_consen 78 VLPILLDEYADP 89 (92)
T ss_pred HHHHHHHHHhCc
Confidence 555555555444
No 71
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=89.48 E-value=14 Score=47.82 Aligned_cols=129 Identities=19% Similarity=0.173 Sum_probs=87.0
Q ss_pred HhhCchhhhhhhhhhc----ccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhH
Q 000315 253 YRCSPQILSGVVPYLT----GELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVK 328 (1678)
Q Consensus 253 ~~~~P~lL~~ViP~Le----~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~ 328 (1678)
-.+.|.++...+|.++ ....+++...|..|=++||.+..... .+....-++..-+.....+-.++||..+-++..
T Consensus 361 ~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p-~l~~~d~~li~~LF~sL~~~~~evr~sIqeALs 439 (501)
T PF13001_consen 361 KLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAP-SLFSKDLSLIEFLFDSLEDESPEVRVSIQEALS 439 (501)
T ss_pred HHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCc-ccccccHHHHHHHHHHhhCcchHHHHHHHHHHH
Confidence 3566777777888884 34667899999999999999887644 334444555566667778889999999999988
Q ss_pred HHHhcCCCCCC-----hHHHHH-HHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHH
Q 000315 329 SCLLTDPSRAD-----APQILT-ALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKL 384 (1678)
Q Consensus 329 ~iL~~~p~~~~-----~~eii~-~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~ 384 (1678)
.++.+-+.... ...... .+.....+..-.+|.+||+-.. +|..+++++...+..
T Consensus 440 sl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an--~~fpf~d~~aR~i~i 499 (501)
T PF13001_consen 440 SLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYAN--ACFPFSDVPARYICI 499 (501)
T ss_pred HHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHHHH--HhCCccchHHHHHHh
Confidence 87765332111 111122 2223345667779999888763 467777877665543
No 72
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=89.27 E-value=14 Score=49.57 Aligned_cols=177 Identities=20% Similarity=0.198 Sum_probs=98.8
Q ss_pred cccHHHHHHHHhhccccchhhHHHHHHHhhcchHhhhh-cccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchH
Q 000315 644 GGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLA-ATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSL 722 (1678)
Q Consensus 644 k~~v~~Li~lL~~~~~~~~e~aLkiLak~~k~i~e~~~-~~~s~l~~~L~~lal~GtpkqAKyAVr~Laa~~~~~~~~~~ 722 (1678)
++.+.-|+++|..++....-.++..|.+.+-+ .++-. -....+.+.|.++-..++...-.-|.++|..++-+.+....
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~ 367 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQ 367 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 45567889998877665555566667666532 22211 12346788899999888888888999999988876643210
Q ss_pred ---HHHHHHHHHhhhhcCCCchHHHHHHHHHhhc--ccccccchHHHHHHHHHhhhccccccCCCCCCCC-------CCc
Q 000315 723 ---SVLYKRLVDMLEEKTHLPAVLQSLGCIAQTA--MPVFETRESEIEEFIKSKILRCSNKIRNDTKACW-------DDR 790 (1678)
Q Consensus 723 ---~~L~~~L~~~L~~~~~l~t~L~sLg~Iaq~a--P~vfe~~~~eI~~fIik~ILl~~~~~~~~~~~~W-------~d~ 790 (1678)
.-++..|+..|.........|..|..|+... ...|.. ++.+.+|++-++..+.... ..+.-| ...
T Consensus 368 mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~--TdcIp~L~~~Ll~~~~~~v-~~eliaL~iNLa~~~r 444 (708)
T PF05804_consen 368 MVSLGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAY--TDCIPQLMQMLLENSEEEV-QLELIALLINLALNKR 444 (708)
T ss_pred HHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhh--cchHHHHHHHHHhCCCccc-cHHHHHHHHHHhcCHH
Confidence 1133455555543322223455566666542 344532 2456777777665432211 111111 000
Q ss_pred hhhHHHHHHHHHHHHHhhcCCCccccccchHHHHHHHHHhh
Q 000315 791 SELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSML 831 (1678)
Q Consensus 791 se~~~aKi~aLK~Lvn~ll~~~~~~~~~~i~~ll~lL~~il 831 (1678)
.-...+.--+|+.|+.+.....+ ..+++++++|-
T Consensus 445 naqlm~~g~gL~~L~~ra~~~~D-------~lLlKlIRNiS 478 (708)
T PF05804_consen 445 NAQLMCEGNGLQSLMKRALKTRD-------PLLLKLIRNIS 478 (708)
T ss_pred HHHHHHhcCcHHHHHHHHHhccc-------HHHHHHHHHHH
Confidence 11111133557777777655433 45788988874
No 73
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.12 E-value=0.69 Score=59.17 Aligned_cols=97 Identities=26% Similarity=0.291 Sum_probs=84.3
Q ss_pred HHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHH
Q 000315 306 SEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLV 385 (1678)
Q Consensus 306 ~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~L 385 (1678)
-+|+--+.|-=-+||.+.|.....+-.++|.. +..-+..|.+.++|-.+-||+.++.++.-++.+ -.|..+.|..+
T Consensus 376 GA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F--A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~--l~i~eeql~~i 451 (823)
T KOG2259|consen 376 GALVHGLEDEFYEVRRAAVASLCSLATSSPGF--AVRALDFLVDMFNDEIEVVRLKAIFALTMISVH--LAIREEQLRQI 451 (823)
T ss_pred ceeeeechHHHHHHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH--heecHHHHHHH
Confidence 56777778888899999999999988888976 457889999999999999999999999888877 56788999999
Q ss_pred HHhhccCChhHHHHHHHHHHH
Q 000315 386 AERLRDKSVLVKRYTMERLAD 406 (1678)
Q Consensus 386 aeR~RDKK~~VR~eAm~~La~ 406 (1678)
.+=+.|..+.||...-+.|+.
T Consensus 452 l~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 452 LESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHHHhcCHHHHHHHHHHHHh
Confidence 999999999999987777654
No 74
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=88.82 E-value=3.7 Score=51.35 Aligned_cols=173 Identities=13% Similarity=0.119 Sum_probs=117.2
Q ss_pred HHHh-hCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHH
Q 000315 251 DVYR-CSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKS 329 (1678)
Q Consensus 251 eL~~-~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~ 329 (1678)
.+|. +--++|..|+--|-. +++...|.+|.+.|++|+..+...|...---+-..+|.-..|-...|=....+.|-.
T Consensus 321 svWeq~f~~iL~~l~EvL~d---~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~ 397 (516)
T KOG2956|consen 321 SVWEQHFAEILLLLLEVLSD---SEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLT 397 (516)
T ss_pred hHHHHHHHHHHHHHHHHHcc---chhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 3564 344555555433322 478999999999999999987766666666677899999999999998889999988
Q ss_pred HHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhh----hhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHH
Q 000315 330 CLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVA----CHALNSIPVETVKLVAERLRDKSVLVKRYTMERLA 405 (1678)
Q Consensus 330 iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la----~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La 405 (1678)
+|.+|.-. .-+.-++.+++-.|+..=.++++....+. ...|..+=.++.=++.+=.---...||+.|+=+|-
T Consensus 398 ~las~~P~----~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLV 473 (516)
T KOG2956|consen 398 TLASHLPL----QCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLV 473 (516)
T ss_pred HHHhhCch----hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHH
Confidence 88877421 34556677777799998888887765442 22233332233334444444556689999999999
Q ss_pred HHHHHHhhhccCCCcchhccccchHHHhhh
Q 000315 406 DIFRGCCLRNFNGSINQNEFEWIPGKILRC 435 (1678)
Q Consensus 406 ~LY~~~~~~~~~~~~~~~~~~wIPs~IL~~ 435 (1678)
.+|+..=- ..-...+...++.-+++
T Consensus 474 amv~~vG~-----~~mePhL~~Lt~sk~~L 498 (516)
T KOG2956|consen 474 AMVNRVGM-----EEMEPHLEQLTSSKLNL 498 (516)
T ss_pred HHHHHHhH-----HhhhhHhhhccHHHHHH
Confidence 99997410 11223455556655544
No 75
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=88.77 E-value=10 Score=48.96 Aligned_cols=217 Identities=18% Similarity=0.178 Sum_probs=134.5
Q ss_pred cHHHHHHHHHHhcCCCcH---HHHHHH-HHHHHHhhhhhHHHHHHHHHHhhc--CCCCCCCCcchHHHHHHHHHhh----
Q 000315 186 QEDLLVILLSALGRNKND---TARRLA-MNVIEQCAGKLEAGIKQFLVSSMS--GDSRPGHSHIDYHEVIYDVYRC---- 255 (1678)
Q Consensus 186 p~~lLd~IL~~l~~~k~~---~a~~LA-~~vi~~~~dkL~~~I~q~f~~il~--~d~~~~~~~~~~h~Li~eL~~~---- 255 (1678)
+..+++.+...+...++. .+.-+| ...|..-..-.+|||..+|..++. +|.... -...+.+-+..|-++
T Consensus 172 ~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~-Vr~Aa~~a~kai~~~~~~~ 250 (569)
T KOG1242|consen 172 EFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINK-VREAAVEAAKAIMRCLSAY 250 (569)
T ss_pred hhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchh-hhHHHHHHHHHHHHhcCcc
Confidence 345566555555433221 112222 222333345588999999998875 231111 111233444444444
Q ss_pred -CchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHh--
Q 000315 256 -SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLL-- 332 (1678)
Q Consensus 256 -~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~-- 332 (1678)
++.+|.+.|+.+... .=..-..|++++|-|--.....+....|++--..-....|..|+||-+-.++...+-.
T Consensus 251 aVK~llpsll~~l~~~----kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svi 326 (569)
T KOG1242|consen 251 AVKLLLPSLLGSLLEA----KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI 326 (569)
T ss_pred hhhHhhhhhHHHHHHH----hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh
Confidence 455666666666553 4456678999999777655556778889999999999999999999987777665332
Q ss_pred cCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhh-hhcCCCCHHHH-HHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000315 333 TDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVAC-HALNSIPVETV-KLVAERLRDKSVLVKRYTMERLADIFRG 410 (1678)
Q Consensus 333 ~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~-~~l~~V~~elL-~~LaeR~RDKK~~VR~eAm~~La~LY~~ 410 (1678)
.|| ++.-+++.|.+++-||..+|... ++.++...+ +.....+-.+| -.|..-+.++....++.|..-.+++++.
T Consensus 327 dN~---dI~~~ip~Lld~l~dp~~~~~e~-~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~L 402 (569)
T KOG1242|consen 327 DNP---DIQKIIPTLLDALADPSCYTPEC-LDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKL 402 (569)
T ss_pred ccH---HHHHHHHHHHHHhcCcccchHHH-HHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHh
Confidence 233 46778899999999999888765 344433222 21222233333 3455556677788888888888888775
Q ss_pred H
Q 000315 411 C 411 (1678)
Q Consensus 411 ~ 411 (1678)
.
T Consensus 403 v 403 (569)
T KOG1242|consen 403 V 403 (569)
T ss_pred h
Confidence 3
No 76
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=88.12 E-value=1.1 Score=45.23 Aligned_cols=84 Identities=21% Similarity=0.205 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCC--CChHHHHHHHHhhhCCChh
Q 000315 279 RLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR--ADAPQILTALCDRLLDFDE 356 (1678)
Q Consensus 279 Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~--~~~~eii~~L~~rL~D~DE 356 (1678)
|..+.-.|+.+--+-+..+....+.+-..-|.-|.|.++.||....++..+|....... .-..+|..+|.+.+.|+|+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~ 82 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDE 82 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 44444455544322233456666788888899999999999999999999987654321 1135899999999999999
Q ss_pred HHHHHH
Q 000315 357 NVRKQV 362 (1678)
Q Consensus 357 kVR~aa 362 (1678)
.||.+|
T Consensus 83 ~Vr~~a 88 (97)
T PF12755_consen 83 NVRSAA 88 (97)
T ss_pred hHHHHH
Confidence 999985
No 77
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.87 E-value=3.1 Score=53.60 Aligned_cols=112 Identities=16% Similarity=0.135 Sum_probs=83.8
Q ss_pred CchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcC
Q 000315 296 ANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN 375 (1678)
Q Consensus 296 ~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~ 375 (1678)
.+...-..+|.....=++|.++.||...++..-. | .+ ..-....+.+-..+-+-|.++.||.+||+.|.-++...+-
T Consensus 191 s~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~-L-~e-g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~ 267 (823)
T KOG2259|consen 191 SLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLA-L-SE-GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPA 267 (823)
T ss_pred cccccHHHHHHHHHHHhcCCCcchHHHHHHHHHh-h-cc-cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCC
Confidence 3444556788887777899999999998887543 1 22 2223345667778889999999999999999777765532
Q ss_pred CC---------CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000315 376 SI---------PVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1678)
Q Consensus 376 ~V---------~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~ 410 (1678)
.. -+..+..+.+=++|..+.||.+|.+.||.+=+.
T Consensus 268 ~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~v 311 (823)
T KOG2259|consen 268 PLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQV 311 (823)
T ss_pred cccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHh
Confidence 11 123577999999999999999999999987665
No 78
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=87.78 E-value=0.48 Score=42.03 Aligned_cols=52 Identities=15% Similarity=0.109 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHhhhhhcC---CCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000315 356 ENVRKQVVAVICDVACHALN---SIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1678)
Q Consensus 356 EkVR~aaV~ai~~la~~~l~---~V~~elL~~LaeR~RDKK~~VR~eAm~~La~L 407 (1678)
+.||.+|+.+++.++..... ..-.+++..|...++|-...||..|...|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 47999999999876643332 23346788999999999999999999999875
No 79
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.66 E-value=1.1e+02 Score=40.68 Aligned_cols=113 Identities=18% Similarity=0.189 Sum_probs=80.5
Q ss_pred hCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcC
Q 000315 255 CSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD 334 (1678)
Q Consensus 255 ~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~ 334 (1678)
..-+++.-.+-++.-.|.+.++-.=-.|...|.. |..|+ +++ ++...-+.=.+-.-|-||...|-..-.+....
T Consensus 102 ~~tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS~-fvTpd--LAR---DLa~Dv~tLL~sskpYvRKkAIl~lykvFLkY 175 (877)
T KOG1059|consen 102 DDTDVLMLTTNLLRKDLNSSNVYEVGLALSGLSC-IVTPD--LAR---DLADDVFTLLNSSKPYVRKKAILLLYKVFLKY 175 (877)
T ss_pred CCccHHHHHHHHHHHHhccCccchhhheeccccc-ccCch--hhH---HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh
Confidence 3334444445566666777776666666666663 44443 454 34444444455578999999999888888877
Q ss_pred CCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcC
Q 000315 335 PSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN 375 (1678)
Q Consensus 335 p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~ 375 (1678)
|+. .+.-.+-|.++|-|+|..|--|||.+||++|..++.
T Consensus 176 PeA--lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPk 214 (877)
T KOG1059|consen 176 PEA--LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQ 214 (877)
T ss_pred hHh--HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCc
Confidence 752 356788999999999999999999999999998865
No 80
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=87.49 E-value=1e+02 Score=39.99 Aligned_cols=51 Identities=29% Similarity=0.327 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccccchhhHHHHHHHhhc
Q 000315 624 FMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGG 674 (1678)
Q Consensus 624 ~~~~a~eLL~~IS~~~P~lFk~~v~~Li~lL~~~~~~~~e~aLkiLak~~k 674 (1678)
..-+|+++|+.+|..+|+.-..|-.++-.++.+.|-.+..-|+-+|-+.|.
T Consensus 319 ~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt 369 (898)
T COG5240 319 LRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGT 369 (898)
T ss_pred HHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCc
Confidence 345789999999999999999988888888898887666667777766663
No 81
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.17 E-value=8.9 Score=52.57 Aligned_cols=164 Identities=16% Similarity=0.184 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHH
Q 000315 204 TARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAV 283 (1678)
Q Consensus 204 ~a~~LA~~vi~~~~dkL~~~I~q~f~~il~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At 283 (1678)
..+..-+...+...|.+...|..+|.++... ++++ -++.+|...+
T Consensus 264 e~Ll~~r~etqe~~d~i~~mi~~if~sVFVH---------RYRD--------------------------V~~~IRaiCi 308 (1048)
T KOG2011|consen 264 ESLLMLRKETQEQQDEIESMINDIFDSVFVH---------RYRD--------------------------VDPDIRAICI 308 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhheeee---------eccc--------------------------CchHHHHHHH
Confidence 5566667777777788888888888776542 2222 3567899999
Q ss_pred HHHHHhhcCCCCCchhhcHHHHH--HHHhh----hcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhh-----hC
Q 000315 284 GLVGDLFAVPGSANNEQFHSVFS--EFLKR----LTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDR-----LL 352 (1678)
Q Consensus 284 ~llG~mfs~~~s~~a~~y~~~w~--~fL~R----~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~r-----L~ 352 (1678)
+-||-- +..||+.|- .||+= .+|+...||..||+.+..+..+.-...-......-+..| ..
T Consensus 309 qeLgiW--------i~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadr 380 (1048)
T KOG2011|consen 309 QELGIW--------IKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADR 380 (1048)
T ss_pred HHHHHH--------HHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhh
Confidence 999954 456777665 45543 589999999999999999887632211223445555554 46
Q ss_pred CChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHH-HHHHHh
Q 000315 353 DFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLAD-IFRGCC 412 (1678)
Q Consensus 353 D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~-LY~~~~ 412 (1678)
|.+.-||....... +.......++.+-+..|...|=|-++.||+.|+..|-. ++..++
T Consensus 381 d~~~~Vrav~L~~~--~~~~~~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~~~~~a 439 (1048)
T KOG2011|consen 381 DRNVSVRAVGLVLC--LLLSSSGLLSDKDILIVYSLIYDSNRRVAVAAGEFLYKKLFERVA 439 (1048)
T ss_pred hcchhHHHHHHHHH--HHHhcccccChhHHHHHHHHHhccCcchHHHHHHHHHHHhhcccc
Confidence 77777876644332 33455667888888899999999999999999988755 444444
No 82
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=86.94 E-value=4.1 Score=51.19 Aligned_cols=78 Identities=17% Similarity=0.022 Sum_probs=37.3
Q ss_pred cCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccC
Q 000315 313 TDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDK 392 (1678)
Q Consensus 313 ~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDK 392 (1678)
.|.+|.||...+..++. +. . +-.+.|..-|.|.|..||.++|.+++.+-.. +.+..|..-+.|.
T Consensus 127 ~~~~p~vR~aal~al~~----r~--~---~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-------~a~~~L~~al~d~ 190 (410)
T TIGR02270 127 AASEPPGRAIGLAALGA----HR--H---DPGPALEAALTHEDALVRAAALRALGELPRR-------LSESTLRLYLRDS 190 (410)
T ss_pred cCCChHHHHHHHHHHHh----hc--c---ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-------cchHHHHHHHcCC
Confidence 45556666555544432 00 0 1223344444566666666666666554321 1111122335666
Q ss_pred ChhHHHHHHHHHHH
Q 000315 393 SVLVKRYTMERLAD 406 (1678)
Q Consensus 393 K~~VR~eAm~~La~ 406 (1678)
.+.||..|+.+|+.
T Consensus 191 ~~~VR~aA~~al~~ 204 (410)
T TIGR02270 191 DPEVRFAALEAGLL 204 (410)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666666643
No 83
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=86.83 E-value=0.82 Score=39.11 Aligned_cols=39 Identities=28% Similarity=0.428 Sum_probs=29.2
Q ss_pred hHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHH
Q 000315 327 VKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAV 365 (1678)
Q Consensus 327 ~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~a 365 (1678)
...++...|.....+.+.+.+..||.|++..||.+||..
T Consensus 3 l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 3 LSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 345556666655556888888888999999999888765
No 84
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=85.17 E-value=1.1e+02 Score=40.21 Aligned_cols=143 Identities=17% Similarity=0.111 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHhh-------hhhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhh-CchhhhhhhhhhcccccCCC
Q 000315 204 TARRLAMNVIEQCA-------GKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRC-SPQILSGVVPYLTGELLTDQ 275 (1678)
Q Consensus 204 ~a~~LA~~vi~~~~-------dkL~~~I~q~f~~il~~d~~~~~~~~~~h~Li~eL~~~-~P~lL~~ViP~Le~EL~sed 275 (1678)
+.+.|+...|.... +.+.+++.+.+.+.....+ ..+..-.|..|-.. .|..+....|+++.. ..-.
T Consensus 420 ~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~~~LkaLGN~g~~~~i~~l~~~l~~~-~~~~ 493 (574)
T smart00638 420 AYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGD-----EEEIQLYLKALGNAGHPSSIKVLEPYLEGA-EPLS 493 (574)
T ss_pred HHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCC-----chheeeHHHhhhccCChhHHHHHHHhcCCC-CCCC
Confidence 33455665664432 3455666655555442211 01122233333322 677777777777632 2235
Q ss_pred hHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCCh
Q 000315 276 LDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFD 355 (1678)
Q Consensus 276 ~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~D 355 (1678)
..+|..|+..|.++-... -....+-+|.-|+.+- ..++||++.+-.+ +.++|+... +-......-.|++
T Consensus 494 ~~iR~~Av~Alr~~a~~~---p~~v~~~l~~i~~n~~--e~~EvRiaA~~~l---m~t~P~~~~---l~~ia~~l~~E~~ 562 (574)
T smart00638 494 TFIRLAAILALRNLAKRD---PRKVQEVLLPIYLNRA--EPPEVRMAAVLVL---METKPSVAL---LQRIAELLNKEPN 562 (574)
T ss_pred HHHHHHHHHHHHHHHHhC---chHHHHHHHHHHcCCC--CChHHHHHHHHHH---HhcCCCHHH---HHHHHHHHhhcCc
Confidence 679999999999775321 1245556777776664 4578999877664 456786432 2222233346888
Q ss_pred hHHHHHHH
Q 000315 356 ENVRKQVV 363 (1678)
Q Consensus 356 EkVR~aaV 363 (1678)
..|+-.+.
T Consensus 563 ~QV~sfv~ 570 (574)
T smart00638 563 LQVASFVY 570 (574)
T ss_pred HHHHHHhH
Confidence 88887643
No 85
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.83 E-value=1.4e+02 Score=38.91 Aligned_cols=170 Identities=17% Similarity=0.162 Sum_probs=108.4
Q ss_pred hhcccccCCChHHHHHHHHHHHHhhcCCC---CCchhh--cHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCC---
Q 000315 266 YLTGELLTDQLDTRLKAVGLVGDLFAVPG---SANNEQ--FHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR--- 337 (1678)
Q Consensus 266 ~Le~EL~sed~~~Rl~At~llG~mfs~~~---s~~a~~--y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~--- 337 (1678)
.+-..+.+++...++.|+..+-++++... .+.+-. -=+.+..||+| |..+.+|.+..=++.+|-.-....
T Consensus 70 ~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~--~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 70 LMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSR--DDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHcc--CCChhHHHHHHHHHHHHhcCchhhccc
Confidence 33344668999999999999999999753 121111 13456778875 456777777666666655422211
Q ss_pred CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCC----CCHHHHHHHHHhh-ccCChhHHHHHHHHHHHHHHHHh
Q 000315 338 ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS----IPVETVKLVAERL-RDKSVLVKRYTMERLADIFRGCC 412 (1678)
Q Consensus 338 ~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~----V~~elL~~LaeR~-RDKK~~VR~eAm~~La~LY~~~~ 412 (1678)
-.....+..|...|..+++.||-+||=+++.+|-..... +.-..+..|..-+ .+.+....+.++=+|.+|.+.-
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk- 226 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK- 226 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCC-
Confidence 011134567889999999999999999999998755331 2333333333333 3333467777888888887642
Q ss_pred hhccCCCcchhccccchHHHhhhhccCCCC
Q 000315 413 LRNFNGSINQNEFEWIPGKILRCLYDKDFG 442 (1678)
Q Consensus 413 ~~~~~~~~~~~~~~wIPs~IL~~~Y~nd~~ 442 (1678)
+.+.....+.-|=..|+.+.|..|.+
T Consensus 227 ----~P~P~~~~v~~iLp~L~~ll~~~D~~ 252 (514)
T KOG0166|consen 227 ----NPSPPFDVVAPILPALLRLLHSTDEE 252 (514)
T ss_pred ----CCCCcHHHHHHHHHHHHHHHhcCCHH
Confidence 12333456777777888888887744
No 86
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=83.87 E-value=11 Score=47.56 Aligned_cols=135 Identities=14% Similarity=0.012 Sum_probs=90.4
Q ss_pred hHHHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHH
Q 000315 244 DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSV 323 (1678)
Q Consensus 244 ~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ 323 (1678)
.+| |--|-..-|..+...++.|.. .++..+|..|+..++. . ..+..+...+....|..+.||.++
T Consensus 42 ~Ah--LdgL~~~G~~a~~~L~~aL~~---d~~~ev~~~aa~al~~---~-------~~~~~~~~L~~~L~d~~~~vr~aa 106 (410)
T TIGR02270 42 LAH--VDGLVLAGKAATELLVSALAE---ADEPGRVACAALALLA---Q-------EDALDLRSVLAVLQAGPEGLCAGI 106 (410)
T ss_pred HHH--HHHHHHhhHhHHHHHHHHHhh---CCChhHHHHHHHHHhc---c-------CChHHHHHHHHHhcCCCHHHHHHH
Confidence 455 555555556665555555532 4667777776655531 1 112358888999999988899999
Q ss_pred HHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHH
Q 000315 324 LEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMER 403 (1678)
Q Consensus 324 ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~ 403 (1678)
+++.+.|= -.+....|...|-|.|..||.+++.+... ... -+.+.+ ..-+.|..+.||..|+..
T Consensus 107 a~ALg~i~--------~~~a~~~L~~~L~~~~p~vR~aal~al~~---r~~--~~~~~L---~~~L~d~d~~Vra~A~ra 170 (410)
T TIGR02270 107 QAALGWLG--------GRQAEPWLEPLLAASEPPGRAIGLAALGA---HRH--DPGPAL---EAALTHEDALVRAAALRA 170 (410)
T ss_pred HHHHhcCC--------chHHHHHHHHHhcCCChHHHHHHHHHHHh---hcc--ChHHHH---HHHhcCCCHHHHHHHHHH
Confidence 99987411 13577788888899999999988755433 221 134433 344569999999999999
Q ss_pred HHHHHH
Q 000315 404 LADIFR 409 (1678)
Q Consensus 404 La~LY~ 409 (1678)
||.+=.
T Consensus 171 LG~l~~ 176 (410)
T TIGR02270 171 LGELPR 176 (410)
T ss_pred HHhhcc
Confidence 988644
No 87
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=83.23 E-value=36 Score=44.59 Aligned_cols=144 Identities=13% Similarity=0.075 Sum_probs=90.4
Q ss_pred hhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCC-------chhhcHHHHHHHHhhh-cCCChhHHHHHHH
Q 000315 254 RCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA-------NNEQFHSVFSEFLKRL-TDRIVAVRMSVLE 325 (1678)
Q Consensus 254 ~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~-------~a~~y~~~w~~fL~R~-~D~s~~VR~~~ve 325 (1678)
.-.|++|..+.+.++..-.-.+..+|.-|+-.+|.|.-.--.+ ....+-..+...|+.. .+.+...++.+++
T Consensus 389 ~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk 468 (574)
T smart00638 389 YPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLK 468 (574)
T ss_pred cCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHH
Confidence 4467777777777777666678889999999999887421111 1233334444444333 3456677888888
Q ss_pred HhHHHHhcCCCCCChHHHHHHHHhhhC---CChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHH
Q 000315 326 HVKSCLLTDPSRADAPQILTALCDRLL---DFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTME 402 (1678)
Q Consensus 326 ~~~~iL~~~p~~~~~~eii~~L~~rL~---D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~ 402 (1678)
++++ +-+| ..+..|...+. .....||.+||.++..++...+..+-.-++..+.. ++..+.||..|..
T Consensus 469 aLGN--~g~~------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n--~~e~~EvRiaA~~ 538 (574)
T smart00638 469 ALGN--AGHP------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLN--RAEPPEVRMAAVL 538 (574)
T ss_pred hhhc--cCCh------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcC--CCCChHHHHHHHH
Confidence 8875 2223 34455555444 45678999999999887776655544444433322 2244789998887
Q ss_pred HHHHH
Q 000315 403 RLADI 407 (1678)
Q Consensus 403 ~La~L 407 (1678)
.|.+-
T Consensus 539 ~lm~t 543 (574)
T smart00638 539 VLMET 543 (574)
T ss_pred HHHhc
Confidence 77654
No 88
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.18 E-value=35 Score=45.22 Aligned_cols=255 Identities=16% Similarity=0.207 Sum_probs=138.1
Q ss_pred hhcCCCcchHHHHHHHHHHHHhhc---CCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHH-------------HHH
Q 000315 64 LLKHQDKDVKLLVATCICEITRIT---APEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRV-------------VIL 127 (1678)
Q Consensus 64 LL~HkD~~Vr~~vAcCLadIlRI~---APdaPytd~qLkdIF~l~v~qf~~L~d~~~p~f~~~~-------------~lL 127 (1678)
=|.|...=||-.+-|||-.|++.+ -|||| .-|..++.+.. ||+ +-...| |++
T Consensus 142 cleHrhsYVRrNAilaifsIyk~~~~L~pDap------eLi~~fL~~e~----Dps--CkRNAFi~L~~~D~ErAl~Yl~ 209 (948)
T KOG1058|consen 142 CLEHRHSYVRRNAILAIFSIYKNFEHLIPDAP------ELIESFLLTEQ----DPS--CKRNAFLMLFTTDPERALNYLL 209 (948)
T ss_pred HHhCcchhhhhhhheeehhHHhhhhhhcCChH------HHHHHHHHhcc----Cch--hHHHHHHHHHhcCHHHHHHHHH
Confidence 468999999999999999999995 48888 44555555432 111 112223 333
Q ss_pred HHHHhhhhhhhcccCCchHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHhcCCCcHHHHH
Q 000315 128 ETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARR 207 (1678)
Q Consensus 128 e~lA~vks~vl~~DL~~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~vp~~lLd~IL~~l~~~k~~~a~~ 207 (1678)
+++..|.++.-. -+-+|.++.. + ++-..|..=-.++.-|+..+-.++..| + |.
T Consensus 210 ~~idqi~~~~~~----LqlViVE~Ir---k-v~~~~p~~~~~~i~~i~~lL~stssaV-------~------------fE 262 (948)
T KOG1058|consen 210 SNIDQIPSFNDS----LQLVIVELIR---K-VCLANPAEKARYIRCIYNLLSSTSSAV-------I------------FE 262 (948)
T ss_pred hhHhhccCccHH----HHHHHHHHHH---H-HHhcCHHHhhHHHHHHHHHHhcCCchh-------h------------hh
Confidence 333333322100 0123333322 2 333334433334444444333332222 1 21
Q ss_pred HHHHHHH--HhhhhhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhh----CchhhhhhhhhhcccccCCChHHHHH
Q 000315 208 LAMNVIE--QCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRC----SPQILSGVVPYLTGELLTDQLDTRLK 281 (1678)
Q Consensus 208 LA~~vi~--~~~dkL~~~I~q~f~~il~~d~~~~~~~~~~h~Li~eL~~~----~P~lL~~ViP~Le~EL~sed~~~Rl~ 281 (1678)
-|..|+. .....|.++...|+.=++.... -+..+-.-+.|++|... --+++..|++. |.+.|.++|.+
T Consensus 263 aa~tlv~lS~~p~alk~Aa~~~i~l~~kesd--nnvklIvldrl~~l~~~~~~il~~l~mDvLrv----Lss~dldvr~K 336 (948)
T KOG1058|consen 263 AAGTLVTLSNDPTALKAAASTYIDLLVKESD--NNVKLIVLDRLSELKALHEKILQGLIMDVLRV----LSSPDLDVRSK 336 (948)
T ss_pred hcceEEEccCCHHHHHHHHHHHHHHHHhccC--cchhhhhHHHHHHHhhhhHHHHHHHHHHHHHH----cCcccccHHHH
Confidence 1221111 1122344444444422221110 01111123344444433 33445555555 67899999999
Q ss_pred HHHHHHHhhcCCCCCchhhcHHHHH-HHHh---hhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhH
Q 000315 282 AVGLVGDLFAVPGSANNEQFHSVFS-EFLK---RLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDEN 357 (1678)
Q Consensus 282 At~llG~mfs~~~s~~a~~y~~~w~-~fL~---R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEk 357 (1678)
+..+.-++.+..... + --..++ ++.+ --.|..-.-|...++....|-.+-|+. +..++..|.+-+-|+.+.
T Consensus 337 tldi~ldLvssrNve--d-iv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~--aatvV~~ll~fisD~N~~ 411 (948)
T KOG1058|consen 337 TLDIALDLVSSRNVE--D-IVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEV--AATVVSLLLDFISDSNEA 411 (948)
T ss_pred HHHHHHhhhhhccHH--H-HHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHH--HHHHHHHHHHHhccCCHH
Confidence 999999999876421 1 011111 1111 124556677999999999999888864 678999999999999999
Q ss_pred HHHHHHHHHHH
Q 000315 358 VRKQVVAVICD 368 (1678)
Q Consensus 358 VR~aaV~ai~~ 368 (1678)
--..++.-|.+
T Consensus 412 aas~vl~FvrE 422 (948)
T KOG1058|consen 412 AASDVLMFVRE 422 (948)
T ss_pred HHHHHHHHHHH
Confidence 88777776655
No 89
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=82.23 E-value=1.4e+02 Score=37.20 Aligned_cols=320 Identities=13% Similarity=0.104 Sum_probs=177.8
Q ss_pred cCCCcchHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhc----cC---CCCC-CCCChhhHHHHHHHHHhhhhhh
Q 000315 66 KHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTF----SG---LKDT-GGPSFGRRVVILETLAKYRSCV 137 (1678)
Q Consensus 66 ~HkD~~Vr~~vAcCLadIlRI~APdaPytd~qLkdIF~l~v~qf----~~---L~d~-~~p~f~~~~~lLe~lA~vks~v 137 (1678)
...|++=|.=+-..|+.+||.|-- .|. ...+.+=+.+|+..+ .. =.+| +...+.|..-+|-.+-.--.++
T Consensus 3 a~~~~~~r~daY~~l~~~l~~~~~-~~~-~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~ 80 (372)
T PF12231_consen 3 AGSDRSSRLDAYMTLNNALKAYDN-LPD-RQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIV 80 (372)
T ss_pred CcCCcHHHHHHHHHHHHHHHHhcC-CCc-HHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHH
Confidence 345566566666669999998842 232 233444444444433 21 1233 4445667777776665444444
Q ss_pred hcccCCchHHHHHHHHHHHHhh-cCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHhc--C----CCcH--HHHHH
Q 000315 138 VMLDLECDELVNEMYSTFFAVA-SDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALG--R----NKND--TARRL 208 (1678)
Q Consensus 138 l~~DL~~~~Li~~lF~~ff~~v-~~~~~~~V~~~m~~IL~~vI~Ese~vp~~lLd~IL~~l~--~----~k~~--~a~~L 208 (1678)
-.++ ++...-+..+..... .+..++.+...-..+|..-==....++.+....|+..+. . .++- .+..+
T Consensus 81 ~~l~---~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i 157 (372)
T PF12231_consen 81 STLS---DDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNI 157 (372)
T ss_pred hhCC---hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHH
Confidence 3232 233334444444443 455677777666666554111122345555555554331 1 1121 66778
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhcCC-CCCCCCcchHHHHHHHHHhhC-chh-hhh-hhhhhcccccCCChHHHHHHHH
Q 000315 209 AMNVIEQCAGKLEAGIKQFLVSSMSGD-SRPGHSHIDYHEVIYDVYRCS-PQI-LSG-VVPYLTGELLTDQLDTRLKAVG 284 (1678)
Q Consensus 209 A~~vi~~~~dkL~~~I~q~f~~il~~d-~~~~~~~~~~h~Li~eL~~~~-P~l-L~~-ViP~Le~EL~sed~~~Rl~At~ 284 (1678)
=+.++..+.+.|...+..+|-.++.+- +.......++..+..++-.+. |+- +.. |...+...+..+ .+-..-++
T Consensus 158 ~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~--~~~~~~~~ 235 (372)
T PF12231_consen 158 YKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG--KLIQLYCE 235 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc--cHHHHHHH
Confidence 889999999999999988876554321 001111223566666555443 222 222 333344444433 77788888
Q ss_pred HHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHH
Q 000315 285 LVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVA 364 (1678)
Q Consensus 285 llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ 364 (1678)
.+..|+..++. ...=|++|..++.=..+.- .+ ......+.+.-...++..+|..||.+|..
T Consensus 236 ~L~~mi~~~~~--~~~a~~iW~~~i~LL~~~~-------~~----------~w~~~n~wL~v~e~cFn~~d~~~k~~A~~ 296 (372)
T PF12231_consen 236 RLKEMIKSKDE--YKLAMQIWSVVILLLGSSR-------LD----------SWEHLNEWLKVPEKCFNSSDPQVKIQAFK 296 (372)
T ss_pred HHHHHHhCcCC--cchHHHHHHHHHHHhCCch-------hh----------ccHhHhHHHHHHHHHhcCCCHHHHHHHHH
Confidence 89999988531 2334678987766543321 11 11224578888889999999999999998
Q ss_pred HHHHhhhhh-cCC-CCHHHHH--------HHHHhhccCCh-hHHHHHHHHHHHHHHHH
Q 000315 365 VICDVACHA-LNS-IPVETVK--------LVAERLRDKSV-LVKRYTMERLADIFRGC 411 (1678)
Q Consensus 365 ai~~la~~~-l~~-V~~elL~--------~LaeR~RDKK~-~VR~eAm~~La~LY~~~ 411 (1678)
+=.-+.+.. .+. .....++ .+..+.-+|.. .||..+|..++.++-..
T Consensus 297 aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~~ 354 (372)
T PF12231_consen 297 AWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYYA 354 (372)
T ss_pred HHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchHHHH
Confidence 877766522 111 1223332 33333333333 89999999999876443
No 90
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=82.13 E-value=9.5 Score=46.11 Aligned_cols=135 Identities=21% Similarity=0.294 Sum_probs=94.1
Q ss_pred HHHHHhh-CchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCC-----------
Q 000315 249 IYDVYRC-SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRI----------- 316 (1678)
Q Consensus 249 i~eL~~~-~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s----------- 316 (1678)
++.|-.+ .|..+-..++.|+. .++.-+|..|...||.+-.... +...+.-..|..
T Consensus 95 ~~aLg~~~~~~a~~~li~~l~~---d~~~~vR~~aa~aL~~~~~~~a----------~~~l~~~l~~~~~~~a~~~~~~~ 161 (335)
T COG1413 95 ADALGELGDPEAVPPLVELLEN---DENEGVRAAAARALGKLGDERA----------LDPLLEALQDEDSGSAAAALDAA 161 (335)
T ss_pred HHHHHccCChhHHHHHHHHHHc---CCcHhHHHHHHHHHHhcCchhh----------hHHHHHHhccchhhhhhhhccch
Confidence 3344444 25555555555554 6899999999999998876532 222222233322
Q ss_pred -hhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChh
Q 000315 317 -VAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVL 395 (1678)
Q Consensus 317 -~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~ 395 (1678)
-.+|...+..... ... ...+..+...+.|.+..||.++..+++.+.... ..+...+...+.|-.+.
T Consensus 162 ~~~~r~~a~~~l~~----~~~----~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-----~~~~~~l~~~~~~~~~~ 228 (335)
T COG1413 162 LLDVRAAAAEALGE----LGD----PEAIPLLIELLEDEDADVRRAAASALGQLGSEN-----VEAADLLVKALSDESLE 228 (335)
T ss_pred HHHHHHHHHHHHHH----cCC----hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-----hhHHHHHHHHhcCCCHH
Confidence 1567776666543 111 357788899999999999999999998877665 44557778899999999
Q ss_pred HHHHHHHHHHHHHH
Q 000315 396 VKRYTMERLADIFR 409 (1678)
Q Consensus 396 VR~eAm~~La~LY~ 409 (1678)
||..++..|+.+=.
T Consensus 229 vr~~~~~~l~~~~~ 242 (335)
T COG1413 229 VRKAALLALGEIGD 242 (335)
T ss_pred HHHHHHHHhcccCc
Confidence 99999999987544
No 91
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=81.59 E-value=66 Score=39.37 Aligned_cols=204 Identities=13% Similarity=0.120 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhccc-ccccHHHHHHHHHHhcCCCcH--HHH--HHHHHHH-------H
Q 000315 147 LVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEES-EDIQEDLLVILLSALGRNKND--TAR--RLAMNVI-------E 214 (1678)
Q Consensus 147 Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Es-e~vp~~lLd~IL~~l~~~k~~--~a~--~LA~~vi-------~ 214 (1678)
+-..+-+.|..++..+-.+.....|...|..-+.-. ..+|..+++.+-.-+...+.. -+| .|+..+. .
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~ 98 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSL 98 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHH
Confidence 444555555555556666666666676666655554 789999999998877655442 222 2222221 2
Q ss_pred HhhhhhHHHHHHHHHHhhcCCCC-CCCCcc-hHHHHHH--------------HHH----hhCchhhhhhhhhhcccccCC
Q 000315 215 QCAGKLEAGIKQFLVSSMSGDSR-PGHSHI-DYHEVIY--------------DVY----RCSPQILSGVVPYLTGELLTD 274 (1678)
Q Consensus 215 ~~~dkL~~~I~q~f~~il~~d~~-~~~~~~-~~h~Li~--------------eL~----~~~P~lL~~ViP~Le~EL~se 274 (1678)
..+..+-+.+-+++.++...... .....+ -++-++. ..| .--|.+|.+ |-+...|.++
T Consensus 99 ~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~--~kvyskl~~~ 176 (339)
T PF12074_consen 99 KFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLS--EKVYSKLASE 176 (339)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcC--HHHHhccCCH
Confidence 22333445555556555543211 111111 2222222 011 112333333 3444544322
Q ss_pred ChHHHHHHHHHHHHhhcCCCCCchhh-cHHHHHHHHhhhcCC--ChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhh
Q 000315 275 QLDTRLKAVGLVGDLFAVPGSANNEQ-FHSVFSEFLKRLTDR--IVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRL 351 (1678)
Q Consensus 275 d~~~Rl~At~llG~mfs~~~s~~a~~-y~~~w~~fL~R~~D~--s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL 351 (1678)
++ =.-+++.+-.++.......... .....++|+-=.... ++.||...++....++..+|.. ....|+.+|...|
T Consensus 177 ~d--~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~-l~~~li~~l~~~l 253 (339)
T PF12074_consen 177 ED--LCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL-LSKSLISGLWKWL 253 (339)
T ss_pred hH--HHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHH
Confidence 22 2345555555555433222111 234445666666666 7778888777777777777642 3345556665555
Q ss_pred CCCh
Q 000315 352 LDFD 355 (1678)
Q Consensus 352 ~D~D 355 (1678)
.+.+
T Consensus 254 ~~~~ 257 (339)
T PF12074_consen 254 SSSE 257 (339)
T ss_pred Hhcc
Confidence 4433
No 92
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=81.11 E-value=14 Score=50.23 Aligned_cols=150 Identities=19% Similarity=0.235 Sum_probs=117.4
Q ss_pred hhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHH-hhhcCCChhHHHHHHHHhHHHHhcCC-
Q 000315 258 QILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFL-KRLTDRIVAVRMSVLEHVKSCLLTDP- 335 (1678)
Q Consensus 258 ~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL-~R~~D~s~~VR~~~ve~~~~iL~~~p- 335 (1678)
+++..+-|.|+.++.+.+=..|..|++-|...+..+.......|-.+.--|+ .|..|....|=+.-.+++..|-...+
T Consensus 249 di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~ 328 (815)
T KOG1820|consen 249 DILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRP 328 (815)
T ss_pred hhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcch
Confidence 6888899999999999999999999999999999876445555555555554 47778877777776666666544432
Q ss_pred -CCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCH-HHHHHHHHhhccCChhHHHHHHHHHHHHHHHH
Q 000315 336 -SRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV-ETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1678)
Q Consensus 336 -~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~-elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~ 411 (1678)
.+..+..+...|.+|+.|---.||-++++++-.+.. ..+. .+++.+++=+++|++.+|.++...|.+.++.+
T Consensus 329 ~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n----s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~ 402 (815)
T KOG1820|consen 329 LFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILN----STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKL 402 (815)
T ss_pred hhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh----cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhc
Confidence 233455778899999999999999998888755444 3333 35688899999999999999999999998875
No 93
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=80.83 E-value=1e+02 Score=40.38 Aligned_cols=303 Identities=16% Similarity=0.139 Sum_probs=167.6
Q ss_pred HHHHHHhcch--hhhcCCCcchHHHHHHH---HHHHHhhcCCC--------CCC------ChhHHHHHHHHHHH-----h
Q 000315 53 QPFLNAIVQP--VLLKHQDKDVKLLVATC---ICEITRITAPE--------APY------SDDVLKDIFQLIVG-----T 108 (1678)
Q Consensus 53 ~~~~~~Lv~~--~LL~HkD~~Vr~~vAcC---LadIlRI~APd--------aPy------td~qLkdIF~l~v~-----q 108 (1678)
+|+...+|+. ++|+|+-++||.-.|-- |+-|+.-|.-. .-| ..+.|--|...+.. -
T Consensus 599 kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~ 678 (975)
T COG5181 599 KPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHR 678 (975)
T ss_pred CcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhc
Confidence 3666677766 78999999999876543 33333322211 111 11334444444433 2
Q ss_pred ccCCCCCCCCChhhHHHHHHHH------HhhhhhhhcccCCc-hHHHHHHHHHHHHhhc--CCChhhHHHHHHHHHHHHh
Q 000315 109 FSGLKDTGGPSFGRRVVILETL------AKYRSCVVMLDLEC-DELVNEMYSTFFAVAS--DDHPESVLSSMQTIMIVLL 179 (1678)
Q Consensus 109 f~~L~d~~~p~f~~~~~lLe~l------A~vks~vl~~DL~~-~~Li~~lF~~ff~~v~--~~~~~~V~~~m~~IL~~vI 179 (1678)
|..+.-|-+.-.+.-.-||.+= ..+...-.+|+... --=..+-.+++|.++- ..|.+.+......-+.-|-
T Consensus 679 ~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is 758 (975)
T COG5181 679 FRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCIS 758 (975)
T ss_pred ccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHH
Confidence 4455555554455555555442 23333335566532 1234455566666654 2345555544444433322
Q ss_pred cccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhhhhHHHHHHHHHH---hhcCCCCC----CCCcchHHHH-HHH
Q 000315 180 EESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVS---SMSGDSRP----GHSHIDYHEV-IYD 251 (1678)
Q Consensus 180 ~Ese~vp~~lLd~IL~~l~~~k~~~a~~LA~~vi~~~~dkL~~~I~q~f~~---il~~d~~~----~~~~~~~h~L-i~e 251 (1678)
.. -=|++||+++|++|.-+.. -.++|..-+=.+-.-.|.-|+= ++.+=..+ .+..+++.-. +.-
T Consensus 759 ~a--iGPqdvL~~LlnnLkvqeR------q~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFey 830 (975)
T COG5181 759 RA--IGPQDVLDILLNNLKVQER------QQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEY 830 (975)
T ss_pred hh--cCHHHHHHHHHhcchHHHH------HhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHH
Confidence 11 2489999999999852210 1122222221111222222321 11110111 1122344433 334
Q ss_pred HHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCC-CCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHH
Q 000315 252 VYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP-GSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSC 330 (1678)
Q Consensus 252 L~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~-~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~i 330 (1678)
+.+.+-+.+.++.|.||+-|...|...|+.|..++-.+--.. |.--....=.+.+-..--.-|.+|.|=..+.++.-.+
T Consensus 831 ig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~ 910 (975)
T COG5181 831 IGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESF 910 (975)
T ss_pred HHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHH
Confidence 667888999999999999999999999999999999886543 2211222223333333355678999888777666543
Q ss_pred HhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHH
Q 000315 331 LLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVIC 367 (1678)
Q Consensus 331 L~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~ 367 (1678)
-..-. ..-+.+++..-|.-|--+||.+-+.++-
T Consensus 911 ~~~lg----~g~~m~Yv~qGLFHPs~~VRk~ywtvyn 943 (975)
T COG5181 911 ATVLG----SGAMMKYVQQGLFHPSSTVRKRYWTVYN 943 (975)
T ss_pred HHHhc----cHHHHHHHHHhccCchHHHHHHHHHHHh
Confidence 22211 1358899999999999999998655553
No 94
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=78.99 E-value=9.4 Score=51.19 Aligned_cols=149 Identities=18% Similarity=0.214 Sum_probs=115.6
Q ss_pred hhhhhhhcccccCCChHHHHHHHHHHHHhhcC-CCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCC--
Q 000315 261 SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAV-PGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR-- 337 (1678)
Q Consensus 261 ~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~-~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~-- 337 (1678)
..+.|-|.....+..-..|-.=...|...++. |..-+.-..|.++--.|.-..=.++.||+.-....+..+.-++..
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 34566666666667777777778888888874 223345678889999999999899999999999999988877642
Q ss_pred CChHHHHHHHHhhhCCCh---hHHHHHHHHHHHHhhhhh----cCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 000315 338 ADAPQILTALCDRLLDFD---ENVRKQVVAVICDVACHA----LNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFR 409 (1678)
Q Consensus 338 ~~~~eii~~L~~rL~D~D---EkVR~aaV~ai~~la~~~----l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~ 409 (1678)
.....+++.+..--.|.| --||..|.+.+..+.... +...-.++++.+.-=+-|||..||++|+.+=..-|-
T Consensus 946 ~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~ 1024 (1030)
T KOG1967|consen 946 EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWYM 1024 (1030)
T ss_pred HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhh
Confidence 334577888888778888 679999999998887633 334466799999999999999999999987655443
No 95
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.74 E-value=60 Score=43.65 Aligned_cols=116 Identities=17% Similarity=0.311 Sum_probs=68.1
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhhhhcccCC--c-hHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhccccc-ccHH
Q 000315 113 KDTGGPSFGRRVVILETLAKYRSCVVMLDLE--C-DELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESED-IQED 188 (1678)
Q Consensus 113 ~d~~~p~f~~~~~lLe~lA~vks~vl~~DL~--~-~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~-vp~~ 188 (1678)
.+|++|-| ++|++|+++-+ +.-.|+-. + ..+...||=.|-.+.+.| =.....+...||+.+++-+.. +|.+
T Consensus 603 KNPs~P~f--nHYLFEsi~~l--i~~t~~~~~~~vs~~e~aL~p~fq~Il~eD-I~EfiPYvfQlla~lve~~~~~ip~~ 677 (960)
T KOG1992|consen 603 KNPSNPQF--NHYLFESIGLL--IRKTCKANPSAVSSLEEALFPVFQTILSED-IQEFIPYVFQLLAVLVEHSSGTIPDS 677 (960)
T ss_pred cCCCCchh--HHHHHHHHHHH--HHHHhccCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCchh
Confidence 46677755 57899998753 33335543 1 346666664444443321 235677888999999998876 8887
Q ss_pred HHHHHHHHhcCC---Cc---HHHHHHHHHHHHHhhhhhH-----HHHHHHHHHhhc
Q 000315 189 LLVILLSALGRN---KN---DTARRLAMNVIEQCAGKLE-----AGIKQFLVSSMS 233 (1678)
Q Consensus 189 lLd~IL~~l~~~---k~---~~a~~LA~~vi~~~~dkL~-----~~I~q~f~~il~ 233 (1678)
...++.-.+.++ ++ .+.-+|-..++...+.... .+|-.+|.-++.
T Consensus 678 ~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLia 733 (960)
T KOG1992|consen 678 YSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIA 733 (960)
T ss_pred HHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhc
Confidence 665444333322 12 2556777777766654443 344556665554
No 96
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=76.92 E-value=2.2e+02 Score=36.60 Aligned_cols=166 Identities=11% Similarity=0.169 Sum_probs=97.9
Q ss_pred CCCChhhHHHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHH
Q 000315 116 GGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLS 195 (1678)
Q Consensus 116 ~~p~f~~~~~lLe~lA~vks~vl~~DL~~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~vp~~lLd~IL~ 195 (1678)
+...+.+.+.+|.++-+..+..+ .++.+..|-+..+.+.+....+.....-..++..||. ...||.+-+..++.
T Consensus 147 ~~~~l~~ll~~l~nviKfn~~~l-----~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~-y~~iP~~sl~~~i~ 220 (464)
T PF11864_consen 147 EESNLSDLLQFLVNVIKFNFNYL-----DEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIIT-YGDIPSESLSPCIE 220 (464)
T ss_pred hhhhHHHHHHHHHHHHhcCCCCC-----CHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH-cCcCChHHHHHHHH
Confidence 44566777777777776655432 2455555555555554443344444555677777776 67899999998887
Q ss_pred HhcC-----CCcHHHHHHHHHHHHHh-hhhhHHHHHHHHHHhhcCCCCCCCCc---ch--HHHHHHHHHhh----Cchh-
Q 000315 196 ALGR-----NKNDTARRLAMNVIEQC-AGKLEAGIKQFLVSSMSGDSRPGHSH---ID--YHEVIYDVYRC----SPQI- 259 (1678)
Q Consensus 196 ~l~~-----~k~~~a~~LA~~vi~~~-~dkL~~~I~q~f~~il~~d~~~~~~~---~~--~h~Li~eL~~~----~P~l- 259 (1678)
-|-. +-..++++..++||... ...+-..++.++ .+.+...... ++ .+-+=.-+|.. .|.+
T Consensus 221 vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL----~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~ 296 (464)
T PF11864_consen 221 VLCSIVNSVSLCKPSWRTMRNLLKSHLGHSAIRTLCDIL----RSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLP 296 (464)
T ss_pred HHhhHhcccccchhHHHHHHHHHcCccHHHHHHHHHHHH----cccCccccccHHHHhhHHHHHHHHHhccccCCcceec
Confidence 6621 22348899999888532 333334444433 2111111111 11 12222234555 3333
Q ss_pred --hhhhhhhhcccccCCChHHHHHHHHHHHHhhc
Q 000315 260 --LSGVVPYLTGELLTDQLDTRLKAVGLVGDLFA 291 (1678)
Q Consensus 260 --L~~ViP~Le~EL~sed~~~Rl~At~llG~mfs 291 (1678)
+..|+|.|..=|+..+.-+=...+.++-++|.
T Consensus 297 ~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 297 FSPSSVLPSLLNALKSNSPRVDYEILLLINRLLD 330 (464)
T ss_pred ccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence 33499999999998888777788888888883
No 97
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=76.88 E-value=32 Score=46.49 Aligned_cols=134 Identities=11% Similarity=0.061 Sum_probs=97.0
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhh
Q 000315 272 LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRL 351 (1678)
Q Consensus 272 ~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL 351 (1678)
..--.-+|..++-|+|+|.-+++ .+++.|-+++..=|....| +.||--+|-+..+|-... ..-..--+..+..+|
T Consensus 941 ~~~~~~vra~~vvTlakmcLah~-~LaKr~~P~lvkeLe~~~~--~aiRnNiV~am~D~C~~Y--Tam~d~YiP~I~~~L 1015 (1529)
T KOG0413|consen 941 AMFSDKVRAVGVVTLAKMCLAHD-RLAKRLMPMLVKELEYNTA--HAIRNNIVLAMGDICSSY--TAMTDRYIPMIAASL 1015 (1529)
T ss_pred cccchHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhhhH--HHHhcceeeeehhhHHHH--HHHHHHhhHHHHHHh
Confidence 33345689999999999998876 7899898888877776544 677866555554433321 111123467888999
Q ss_pred CCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000315 352 LDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1678)
Q Consensus 352 ~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~ 410 (1678)
.||++-||++++.-+..+-.+.+-.-..+++--+---+-|-+..||..|=-.++.+...
T Consensus 1016 ~Dp~~iVRrqt~ilL~rLLq~~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1016 CDPSVIVRRQTIILLARLLQFGIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred cCchHHHHHHHHHHHHHHHhhhhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhh
Confidence 99999999999999888877777666777665555666799999888777666666654
No 98
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=76.57 E-value=12 Score=51.64 Aligned_cols=137 Identities=20% Similarity=0.215 Sum_probs=100.0
Q ss_pred CcchHHHHHHHHH-----hhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCC
Q 000315 241 SHIDYHEVIYDVY-----RCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDR 315 (1678)
Q Consensus 241 ~~~~~h~Li~eL~-----~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~ 315 (1678)
..+.-.+++..+| ...| +.+-+|-|-.-+.+....+|..|.+.+|.||.. .....+--+.+.|+-=..|.
T Consensus 792 ~~~~s~~vf~s~~~~m~s~l~~--~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~---~~~e~m~~v~~~~~~ll~~~ 866 (1549)
T KOG0392|consen 792 EFLSSFEVFNSLAPLMHSFLHP--LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKS---ATRETMATVINGFLPLLGDL 866 (1549)
T ss_pred chhhhHHHHHHHHHhhhhhhhh--hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhccch
Confidence 3344455666666 3345 667788888889999999999999999999976 34566677777777777788
Q ss_pred ChhHHHHHHHHhHHHHhcCCCC---CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhh--------hcCCCCHHHH
Q 000315 316 IVAVRMSVLEHVKSCLLTDPSR---ADAPQILTALCDRLLDFDENVRKQVVAVICDVACH--------ALNSIPVETV 382 (1678)
Q Consensus 316 s~~VR~~~ve~~~~iL~~~p~~---~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~--------~l~~V~~elL 382 (1678)
+--+|.+-...+-.+|.....+ .-..-++.-|..|+-|..|.||.+|-+++..+... .+..+|.+++
T Consensus 867 ~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl 944 (1549)
T KOG0392|consen 867 DKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELL 944 (1549)
T ss_pred hhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHH
Confidence 8888887777766666542111 11234778899999999999999999999887642 2345677766
No 99
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=75.94 E-value=18 Score=43.75 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000315 357 NVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1678)
Q Consensus 357 kVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~ 410 (1678)
.||.+++.++..+. ....+..+.++++|....||..|...|+.+-..
T Consensus 164 ~~r~~a~~~l~~~~-------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~ 210 (335)
T COG1413 164 DVRAAAAEALGELG-------DPEAIPLLIELLEDEDADVRRAAASALGQLGSE 210 (335)
T ss_pred HHHHHHHHHHHHcC-------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcc
Confidence 45555555443321 223345667777777778888888888877654
No 100
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=75.48 E-value=1.6e+02 Score=37.00 Aligned_cols=183 Identities=16% Similarity=0.264 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCChhhHHHH-HH----HHHhhhhhh--------hcccCCchHHHHHHHHHHHHhhc--
Q 000315 96 DVLKDIFQLIVGTFSGLKDTGGPSFGRRVVI-LE----TLAKYRSCV--------VMLDLECDELVNEMYSTFFAVAS-- 160 (1678)
Q Consensus 96 ~qLkdIF~l~v~qf~~L~d~~~p~f~~~~~l-Le----~lA~vks~v--------l~~DL~~~~Li~~lF~~ff~~v~-- 160 (1678)
.-++++|.+|+.-+..+.-..++|-.+..-= +. .+.-..... +.++-+ -..++.+.++++++
T Consensus 139 ~ai~k~lpl~lqGl~~~~~~~dayL~~~l~~ii~~y~~~Fl~~~~~~~~~~l~~~~~~~~~---~~~~l~~~il~~i~~~ 215 (373)
T PF14911_consen 139 QAIRKSLPLFLQGLGRLSQRQDAYLNQQLRNIIQQYLPRFLPASPSKLVARLSTLLSAFTP---RNEELRKFILQVIRSN 215 (373)
T ss_pred HHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHhHhccCCCccccccccccccchhh---hhhHHHHHHHHHHHHH
Confidence 3489999999999988888888887665321 11 111111111 112222 12233333333333
Q ss_pred -----CCChhhHHHHHHHHHHHHhcc----cccccHHHHHHHH----HHhc-CC----CcHHHHHHHHHHHHHhh-----
Q 000315 161 -----DDHPESVLSSMQTIMIVLLEE----SEDIQEDLLVILL----SALG-RN----KNDTARRLAMNVIEQCA----- 217 (1678)
Q Consensus 161 -----~~~~~~V~~~m~~IL~~vI~E----se~vp~~lLd~IL----~~l~-~~----k~~~a~~LA~~vi~~~~----- 217 (1678)
+.-|+.=...+..++.+++.+ ....-..++..++ ..+. -+ -+.-|-.+-..+++.|.
T Consensus 216 fl~~~~~~p~p~l~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~~~~~ 295 (373)
T PF14911_consen 216 FLEFKGSAPPPRLASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQVGSSG 295 (373)
T ss_pred HhcCCCCCCCCcHHHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHcccccCcc
Confidence 222332233334444455555 2222222233222 2221 11 11234444444555554
Q ss_pred ---hhhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhcccccC--------CChHHHHHHHHHH
Q 000315 218 ---GKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLT--------DQLDTRLKAVGLV 286 (1678)
Q Consensus 218 ---dkL~~~I~q~f~~il~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~s--------ed~~~Rl~At~ll 286 (1678)
+.|+..+++|..+-+. -....++.++..|...+|+++.+.||+|+.+|.. +|...|..=-+++
T Consensus 296 ~~~~~l~s~lrsfvqk~l~------~~t~~~f~~l~~vA~l~p~lV~~Lip~i~q~l~~~E~kRG~G~d~~lR~~~~rL~ 369 (373)
T PF14911_consen 296 EPREQLTSVLRSFVQKYLA------HYTYQYFQFLEKVAELDPQLVISLIPTIRQSLKDSERKRGLGRDVALRKALSRLL 369 (373)
T ss_pred hHHHHHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHH
Confidence 4455555555543211 0123689999999999999999999999998863 3666776655555
Q ss_pred H
Q 000315 287 G 287 (1678)
Q Consensus 287 G 287 (1678)
+
T Consensus 370 ~ 370 (373)
T PF14911_consen 370 S 370 (373)
T ss_pred H
Confidence 4
No 101
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=75.12 E-value=1.4e+02 Score=42.84 Aligned_cols=215 Identities=18% Similarity=0.252 Sum_probs=119.0
Q ss_pred HhccCCCCC---CCCChhhHHHHHHHHHhhhhhh-hcccCCchHHHHHH---------HHHHHHhhcCCChhhHHHHHHH
Q 000315 107 GTFSGLKDT---GGPSFGRRVVILETLAKYRSCV-VMLDLECDELVNEM---------YSTFFAVASDDHPESVLSSMQT 173 (1678)
Q Consensus 107 ~qf~~L~d~---~~p~f~~~~~lLe~lA~vks~v-l~~DL~~~~Li~~l---------F~~ff~~v~~~~~~~V~~~m~~ 173 (1678)
.+|++++.| .+....++.++|.++-.+-.-- ..+|-.-++||..| .+..+..+..-.|.++...|..
T Consensus 768 G~~p~~~~p~~~g~k~~~k~~~~l~~l~nIL~Gy~~~l~~~~~~li~~Lr~p~Lp~~ew~~~~s~~~~Rlp~~l~~~~~~ 847 (2196)
T KOG0368|consen 768 GSFPRLGSPAIEGNKPHQKFHSLLNRLENILAGYDPKLDETVQELIKVLRDPELPYLEWQEHISALANRLPPNLDKSLES 847 (2196)
T ss_pred ccccccCCccccccchHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHhcCCCcChHHHHHHHHHHhccCChhHHHHHHH
Confidence 467777765 2333445666776665432111 11121124555555 5556666667778889988888
Q ss_pred HHHHHhcccccccHHHHHHHHHH-hc-CCCcH---------HHHHHHHHHHHHhhhh--------hHHHH--HHHHHHhh
Q 000315 174 IMIVLLEESEDIQEDLLVILLSA-LG-RNKND---------TARRLAMNVIEQCAGK--------LEAGI--KQFLVSSM 232 (1678)
Q Consensus 174 IL~~vI~Ese~vp~~lLd~IL~~-l~-~~k~~---------~a~~LA~~vi~~~~dk--------L~~~I--~q~f~~il 232 (1678)
++..-..-.-..|...|..||.. +. .+.+. |--+|..+-+..-... |+.|+ -+||+.
T Consensus 848 ~~~~~~s~~t~FPakql~~il~~~~~~~~~~~~~~~~~~~~pl~~l~~~y~~g~~~H~~~v~~~Lle~Yl~VEk~F~~-- 925 (2196)
T KOG0368|consen 848 LVAKSASRITQFPAKQLAKILDAHLATLNRAEREVLFVNIQPLLKLVSRYSGGLEAHAKEVVHDLLEEYLEVEKLFNG-- 925 (2196)
T ss_pred HHHHHhhhcccCcHHHHHHHHHHHhhccccccchhhhhhhhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 88887666668899999888853 32 11111 2222222222211111 22221 122321
Q ss_pred cCCCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhcccccCCC-hHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhh
Q 000315 233 SGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQ-LDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKR 311 (1678)
Q Consensus 233 ~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed-~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R 311 (1678)
....+-..|..|-+-.+..+..|+-++. ++.+ ..--.+.+.+|+.|-. ++ ...++.|..-|.+
T Consensus 926 --------~~~~~e~~i~~lr~~~~~d~~kVv~~i~---SHs~i~~KN~Lv~~ll~~l~~-~s----~~~~~~f~~iL~~ 989 (2196)
T KOG0368|consen 926 --------RDSHYEDVILRLREENKKDLKKVVDIIL---SHSQIKSKNKLVLALLDQLKP-PS----SKVSDEFRDILRK 989 (2196)
T ss_pred --------CcchHHHHHHHHHHhhhhHHHHHHHHHH---cchhhhhhhHHHHHHHHHhcC-CC----CCCCHHHHHHHHH
Confidence 1112334666666666655666655442 2222 2223455666666554 33 4556777888888
Q ss_pred hcCCChhHHHHHHHHhHHHHhcCCCCCC
Q 000315 312 LTDRIVAVRMSVLEHVKSCLLTDPSRAD 339 (1678)
Q Consensus 312 ~~D~s~~VR~~~ve~~~~iL~~~p~~~~ 339 (1678)
+.+-+...-.++.-.|.+||...|+..+
T Consensus 990 l~~L~~~~~~eVal~Ar~iLi~~ps~~~ 1017 (2196)
T KOG0368|consen 990 LTELNHTNTSEVALKARQILIQSPSYEL 1017 (2196)
T ss_pred HHhhccchHHHHHHHHHHHHHhCcchhh
Confidence 8888888778888888888888776433
No 102
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=74.94 E-value=3.5 Score=45.22 Aligned_cols=120 Identities=14% Similarity=0.199 Sum_probs=87.4
Q ss_pred HHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHH
Q 000315 246 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 325 (1678)
Q Consensus 246 h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve 325 (1678)
-+++.++++..+..-..++-++-..+.+.....-..=+.+|+.|.... ......|.+..++|+.-+....+++-+..+.
T Consensus 39 ~~IL~~~fk~h~~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~-p~~vle~~~~l~~~ld~l~~lp~~~a~~ll~ 117 (158)
T PF14676_consen 39 IQILLELFKVHEMIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKA-PLTVLECSSKLKELLDYLSFLPGDVAIGLLR 117 (158)
T ss_dssp HHHHHHHHHH-GGGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH--HHHHS-S-HHHHGGGGGTTTS-HHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHC-hHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 467888888888888888888877777665543344578888887653 2456778888899999999999999999999
Q ss_pred HhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHH
Q 000315 326 HVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICD 368 (1678)
Q Consensus 326 ~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~ 368 (1678)
++-.++..+++ ....++--|++-+.--|..+|..||..+++
T Consensus 118 Al~PLi~~s~~--lrd~lilvLRKamf~r~~~~R~~Av~Gfl~ 158 (158)
T PF14676_consen 118 ALLPLIKFSPS--LRDSLILVLRKAMFSRELDARQMAVNGFLQ 158 (158)
T ss_dssp HHHHHHTT-HH--HHHHHHHHHHHHTT-SSHHHHHHHHHHHH-
T ss_pred HHHHHHhcCHH--HHHHHHHHHHHHHccccHHHHHHHHHHhcC
Confidence 99998887764 234678888888999999999999998864
No 103
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=74.54 E-value=31 Score=46.97 Aligned_cols=144 Identities=13% Similarity=0.184 Sum_probs=107.1
Q ss_pred hhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHH
Q 000315 264 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQI 343 (1678)
Q Consensus 264 iP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~ei 343 (1678)
.+.+..-+..-|..+=..|.+.|+.|...-+..|-..-...+..+|.|+-|+-+.+|-..+.++-.++.+.+ ...+
T Consensus 297 ~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~----l~~~ 372 (815)
T KOG1820|consen 297 GILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP----LSKM 372 (815)
T ss_pred HHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc----HHHH
Confidence 334444555667777788888888888765544444446788999999999999999999999998888655 3467
Q ss_pred HHHHHhhhCCChhHHHHHHHHHHHHhhh-hhcCCCCH----HHHHHHHHhhccCChhHHHHHHHHHHHHHHHH
Q 000315 344 LTALCDRLLDFDENVRKQVVAVICDVAC-HALNSIPV----ETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1678)
Q Consensus 344 i~~L~~rL~D~DEkVR~aaV~ai~~la~-~~l~~V~~----elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~ 411 (1678)
.+++..-+-+-...+|...-..+...-. .....++. .+...++-.+.|+...||..|.+.++.+++.+
T Consensus 373 ~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~ 445 (815)
T KOG1820|consen 373 SEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVH 445 (815)
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHh
Confidence 8888888889999999884444432211 11122333 35568888999999999999999999999976
No 104
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=74.16 E-value=26 Score=48.49 Aligned_cols=156 Identities=18% Similarity=0.256 Sum_probs=101.2
Q ss_pred cchHHHHHHHHHhh--CchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHH----hhh-cC
Q 000315 242 HIDYHEVIYDVYRC--SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFL----KRL-TD 314 (1678)
Q Consensus 242 ~~~~h~Li~eL~~~--~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL----~R~-~D 314 (1678)
.+++-+|+.+|-++ .-..|-.|+|++-+-+.....++|..|++||.++++.-. .+....-.+|.+|| .++ +|
T Consensus 440 K~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr-~~~~~daniF~eYlfP~L~~l~~d 518 (1431)
T KOG1240|consen 440 KLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVR-DIPPSDANIFPEYLFPHLNHLLND 518 (1431)
T ss_pred HHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhcc-CCCcccchhhHhhhhhhhHhhhcc
Confidence 34678888888766 556788899999999999999999999999999998642 34443444444443 333 45
Q ss_pred -CChhHHHHHHHHhHHHHhc------------------CCC---------CCChHHHH----HHHHhhhCCChhHHHHHH
Q 000315 315 -RIVAVRMSVLEHVKSCLLT------------------DPS---------RADAPQIL----TALCDRLLDFDENVRKQV 362 (1678)
Q Consensus 315 -~s~~VR~~~ve~~~~iL~~------------------~p~---------~~~~~eii----~~L~~rL~D~DEkVR~aa 362 (1678)
-...||++...+++.+-.+ .|. ..+..++. ..+...|.|++.-||++-
T Consensus 519 ~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~L 598 (1431)
T KOG1240|consen 519 SSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRAL 598 (1431)
T ss_pred CccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 5677999888777653321 111 01222333 344446777777888877
Q ss_pred HHHHHHhhhhhcCCCCHH-HHHHHHHhhccCChhHHH
Q 000315 363 VAVICDVACHALNSIPVE-TVKLVAERLRDKSVLVKR 398 (1678)
Q Consensus 363 V~ai~~la~~~l~~V~~e-lL~~LaeR~RDKK~~VR~ 398 (1678)
++.|+.+..+--..=+.+ +|..|.-=+-||.+..|.
T Consensus 599 le~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~ 635 (1431)
T KOG1240|consen 599 LESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRG 635 (1431)
T ss_pred HHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHH
Confidence 777777665443333333 445666666677666664
No 105
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=73.15 E-value=11 Score=49.38 Aligned_cols=108 Identities=16% Similarity=0.154 Sum_probs=82.3
Q ss_pred cHHHHH-HHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhh-hhcCCCC
Q 000315 301 FHSVFS-EFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVAC-HALNSIP 378 (1678)
Q Consensus 301 y~~~w~-~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~-~~l~~V~ 378 (1678)
|+.-+. ..++=|.=.+..||+..+++..+.+-.-+..-...+|...+..-+.|+++.+|..+|+++..+|. -.-..+.
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln 406 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLN 406 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhc
Confidence 444444 33455566788999999999988665322112234788999999999999999999999988886 3455689
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHHH
Q 000315 379 VETVKLVAERLRDKSVLVKRYTMERLADIF 408 (1678)
Q Consensus 379 ~elL~~LaeR~RDKK~~VR~eAm~~La~LY 408 (1678)
.|+|+.++.---|-...+|..+-.+||++=
T Consensus 407 ~Ellr~~ar~q~d~~~~irtntticlgki~ 436 (690)
T KOG1243|consen 407 GELLRYLARLQPDEHGGIRTNTTICLGKIA 436 (690)
T ss_pred HHHHHHHHhhCccccCcccccceeeecccc
Confidence 999999988877888888888877777763
No 106
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.15 E-value=3e+02 Score=36.06 Aligned_cols=283 Identities=14% Similarity=0.154 Sum_probs=170.1
Q ss_pred CChhhHH-HHHHHHHhhhhhhhcccCC-chHHHHHHHHHHHHhhcCCChh-hHHHHHHHHHHHHhcccccccHHHHHHHH
Q 000315 118 PSFGRRV-VILETLAKYRSCVVMLDLE-CDELVNEMYSTFFAVASDDHPE-SVLSSMQTIMIVLLEESEDIQEDLLVILL 194 (1678)
Q Consensus 118 p~f~~~~-~lLe~lA~vks~vl~~DL~-~~~Li~~lF~~ff~~v~~~~~~-~V~~~m~~IL~~vI~Ese~vp~~lLd~IL 194 (1678)
..|.++. ..||-=--||-|+.-.|.+ -+.+|.++-..|--.-..++.+ .+.......+..=++... .-..++-+++
T Consensus 12 KlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~-Y~~~iv~Pv~ 90 (675)
T KOG0212|consen 12 KLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAG-YLEKIVPPVL 90 (675)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHH-HHHHhhHHHH
Confidence 4455543 2222222344555444443 2456666666654422222222 222222222222222222 4566777788
Q ss_pred HHhcCCCcH-------HHHHHHHHHHHHhhhhhHHHHHHHHHHhh------cCCCCCCCCcchHHHHHHHHHhh-----C
Q 000315 195 SALGRNKND-------TARRLAMNVIEQCAGKLEAGIKQFLVSSM------SGDSRPGHSHIDYHEVIYDVYRC-----S 256 (1678)
Q Consensus 195 ~~l~~~k~~-------~a~~LA~~vi~~~~dkL~~~I~q~f~~il------~~d~~~~~~~~~~h~Li~eL~~~-----~ 256 (1678)
..|...... +.|++|+ -|- ..|--||+.+. ..|+.. .....-+|+-.|.+- +
T Consensus 91 ~cf~D~d~~vRyyACEsLYNiaK----v~k----~~v~~~Fn~iFdvL~klsaDsd~--~V~~~aeLLdRLikdIVte~~ 160 (675)
T KOG0212|consen 91 NCFSDQDSQVRYYACESLYNIAK----VAK----GEVLVYFNEIFDVLCKLSADSDQ--NVRGGAELLDRLIKDIVTESA 160 (675)
T ss_pred HhccCccceeeeHhHHHHHHHHH----Hhc----cCcccchHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHhccccc
Confidence 888644322 4566655 222 23334555432 223211 111223333333322 2
Q ss_pred -chhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHh---
Q 000315 257 -PQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLL--- 332 (1678)
Q Consensus 257 -P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~--- 332 (1678)
-=-|...||.|.+-+-.-++..|.-.+.-+--+.+.|+.+|..--|+++.-.+.=..|-+++||..+=.+..++|.
T Consensus 161 ~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~ 240 (675)
T KOG0212|consen 161 STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIR 240 (675)
T ss_pred cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh
Confidence 1236779999999999999999999999999999999999998889999999999999999999877776666664
Q ss_pred cCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCC---CHHHHHHHHHhhccCCh-hHHHHHHHH---HH
Q 000315 333 TDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI---PVETVKLVAERLRDKSV-LVKRYTMER---LA 405 (1678)
Q Consensus 333 ~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V---~~elL~~LaeR~RDKK~-~VR~eAm~~---La 405 (1678)
+.|+.-...++++-+...+.-+++..+..|+.-|.++.......+ -..+|..+..-+-|+-. .++..|... |.
T Consensus 241 s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~ 320 (675)
T KOG0212|consen 241 SSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLL 320 (675)
T ss_pred cCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHH
Confidence 457653456899999999999999999998888877765443322 12345556666777666 466554433 44
Q ss_pred HHHHHH
Q 000315 406 DIFRGC 411 (1678)
Q Consensus 406 ~LY~~~ 411 (1678)
.+...+
T Consensus 321 ~l~s~~ 326 (675)
T KOG0212|consen 321 KLVSSE 326 (675)
T ss_pred HHHhhh
Confidence 444443
No 107
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=72.65 E-value=1.8e+02 Score=36.53 Aligned_cols=259 Identities=17% Similarity=0.172 Sum_probs=0.0
Q ss_pred hcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCH
Q 000315 300 QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV 379 (1678)
Q Consensus 300 ~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~ 379 (1678)
+|-+-|..-|+-..--+-+=|++ .++++.+...-|+... +-+++-.+.+-|-|-.||.+|++.+-.++.-..-.-..
T Consensus 22 q~v~~y~~il~~~k~~~k~k~la-sq~ip~~fk~fp~la~--~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~ 98 (460)
T KOG2213|consen 22 QHVDDYEGILKAVKGTSKEKRLA-SQFIPRFFKHFPSLAD--EAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVN 98 (460)
T ss_pred hhHHHHHHHHHHhhcchHHHHHH-HHHHHHHHhhCchhhh--HHHHhhhccccccchhhHHHHHhccchhccCchhhhhH
Q ss_pred HHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCcchhccccchHHHhhhhccCCCCchhHHHHhhccCcCCCC
Q 000315 380 ETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGF 459 (1678)
Q Consensus 380 elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~~wIPs~IL~~~Y~nd~~~~lVE~vL~e~LlP~~~ 459 (1678)
++|-.|.. =-.|+.||...-. .+...-...+..|-++|+-+ -..+|.
T Consensus 99 d~l~qLLn-------------k~sl~~Lf~~~~~--~D~~irek~l~fi~tKl~~l----------~~e~L~-------- 145 (460)
T KOG2213|consen 99 DVLVQLLN-------------KASLTGLFGQIEV--GDEQIREKVLKFIRTKLITL----------KGEVLT-------- 145 (460)
T ss_pred HHHHHHHH-------------HHHHHHHHhhhhh--hhHHHHHHHHHHHHHHhhcc----------cHHHhh--------
Q ss_pred CHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhcCCCc-----HHHHHHHHHHHHHHH
Q 000315 460 SVKDR--VRHWVRIFSGFDRIEMKALEKILEQKQRLQ-----QEMQRYLSLRQMHQDGDA-----PEIQKKILFCFRVMS 527 (1678)
Q Consensus 460 ~~~~R--~~~ll~l~~~LD~~~~kal~~il~~k~~l~-----~~~~~~l~l~~~~~~~d~-----~ei~~kl~~~i~~Ls 527 (1678)
.+-+| +.-.-..+.+.+..++.+|..||..-..++ ..|+++.+--+...+-|. ++...++-+|...-.
T Consensus 146 kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k~~~a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~Av 225 (460)
T KOG2213|consen 146 KEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQTKAGEARLQELAEEQEGLADLDAFNVSDADYVDRFISCLLMAV 225 (460)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhh
Q ss_pred hhcCCchHHHHHH---------HHHHhhccHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 000315 528 RSFAEPAKAEENF---------LILDQLKDANVWKILMNL--LDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSM 594 (1678)
Q Consensus 528 ~~fPDp~Ka~~~L---------~kf~klnD~Ri~kLLk~~--idp~td~~tv~~a~kELlkkL~~k~~~~e~l~~Ll~ 594 (1678)
-+|.-..+....+ ..|+++-+.|=..+||.+ |++.|+.+.+......++..|....+..++-..+.+
T Consensus 226 PfFargapSskf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMss~ttaq~a~q~Lpsi~elLk~yMpa~kt~ee~~f 303 (460)
T KOG2213|consen 226 PFFARGAPSSKFVEYLNKHIIPHHFDKLTEERKLDLLKALAEMSSYTTAQAARQMLPSIVELLKEYMPAPKTGEEMQF 303 (460)
T ss_pred hhhhcCCchhHHHHHHHhhhcccccccchHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHhcccCCccHHHHH
No 108
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.55 E-value=3.6e+02 Score=36.59 Aligned_cols=144 Identities=16% Similarity=0.183 Sum_probs=90.4
Q ss_pred CchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCC--hhHHHH---HHHHhHHH
Q 000315 256 SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRI--VAVRMS---VLEHVKSC 330 (1678)
Q Consensus 256 ~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s--~~VR~~---~ve~~~~i 330 (1678)
+|+.-...--+|...|...++..+..|.+.+=.|+.. | ..+|+++..-+ ||.=.+ .++... ..+.++
T Consensus 14 ~p~~e~~~~~~ik~~Lek~~~~~KIeamK~ii~~mln-G----e~~p~Llm~Ii-Rfvlps~~~elKKLly~ywE~vP-- 85 (948)
T KOG1058|consen 14 SPDGEPMSEDEIKEKLEKGDDEVKIEAMKKIIALMLN-G----EDLPSLLMTII-RFVLPSRNHELKKLLYYYWELVP-- 85 (948)
T ss_pred CCcccccchHHHHHHHhcCChHHHHHHHHHHHHHHHc-C----CCchHHHHHHh-heeeccCchHHHHHHHHHHHHcc--
Confidence 4444444445777788999999999999988777765 3 45566554332 433221 111111 112222
Q ss_pred HhcCCCCCChHHH---HHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000315 331 LLTDPSRADAPQI---LTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1678)
Q Consensus 331 L~~~p~~~~~~ei---i~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~L 407 (1678)
.+++++....|. .++++.=|.-|.|=||-.+..-+|.+--..+- +.++-++..-+--++.=||+.|+-++..|
T Consensus 86 -Kt~~dgkl~~EMILvcna~RkDLQHPNEyiRG~TLRFLckLkE~ELl---epl~p~IracleHrhsYVRrNAilaifsI 161 (948)
T KOG1058|consen 86 -KTDSDGKLLHEMILVCNAYRKDLQHPNEYIRGSTLRFLCKLKEPELL---EPLMPSIRACLEHRHSYVRRNAILAIFSI 161 (948)
T ss_pred -ccCCCcccHHHHHHHHHHHhhhccCchHhhcchhhhhhhhcCcHHHh---hhhHHHHHHHHhCcchhhhhhhheeehhH
Confidence 233333222333 37888899999999999999998886432211 12334455555667889999999999999
Q ss_pred HHHH
Q 000315 408 FRGC 411 (1678)
Q Consensus 408 Y~~~ 411 (1678)
|+..
T Consensus 162 yk~~ 165 (948)
T KOG1058|consen 162 YKNF 165 (948)
T ss_pred Hhhh
Confidence 9973
No 109
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=71.22 E-value=5.9 Score=50.80 Aligned_cols=104 Identities=16% Similarity=0.145 Sum_probs=71.7
Q ss_pred HHHHH-HHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHH
Q 000315 302 HSVFS-EFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE 380 (1678)
Q Consensus 302 ~~~w~-~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~e 380 (1678)
.+++. .|..|..|+++.||+.|+.+....+.+-|+--.-.-.+.++.=-|.|..+.||+.+++.+--+..+.++. +
T Consensus 273 ~dicdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~---d 349 (740)
T COG5537 273 KDICDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHT---D 349 (740)
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcc---h
Confidence 34444 8999999999999999999998888776641111123455566799999999999999986665544331 1
Q ss_pred HHHHHHHhh---------ccCChhHHHHHHHHHHHHHH
Q 000315 381 TVKLVAERL---------RDKSVLVKRYTMERLADIFR 409 (1678)
Q Consensus 381 lL~~LaeR~---------RDKK~~VR~eAm~~La~LY~ 409 (1678)
.++.+.+|- +|=.. ||-.+++.|..+--
T Consensus 350 ~ir~f~eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~ 386 (740)
T COG5537 350 AIRRFVERFKDRILEFLRTDSDC-VRICSIKSLCYLRI 386 (740)
T ss_pred HHHHHHHHHHHHHHHHHhhccch-hhHHHHHHHHHHHH
Confidence 344444444 34444 88888888876644
No 110
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=71.04 E-value=1.3e+02 Score=35.64 Aligned_cols=145 Identities=14% Similarity=0.194 Sum_probs=84.0
Q ss_pred hhhhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhCc---hhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCC
Q 000315 217 AGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSP---QILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP 293 (1678)
Q Consensus 217 ~dkL~~~I~q~f~~il~~d~~~~~~~~~~h~Li~eL~~~~P---~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~ 293 (1678)
..+++.||.+-...++... -.+........++..| .+.+ .++.+.||.+-.-|.+.++.+|..|.++|..|=..|
T Consensus 88 ~~~Ik~~i~~Vc~~~~s~~-lns~~Q~agLrlL~nL-tv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np 165 (254)
T PF04826_consen 88 QEQIKMYIPQVCEETVSSP-LNSEVQLAGLRLLTNL-TVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENP 165 (254)
T ss_pred HHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHcc-CCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCH
Confidence 3445555555555444431 1111112233444433 1222 345556777766677889999999999998776665
Q ss_pred CC---CchhhcHHHHHHHHhhhcCCChhHHHH-HHHHhHHHHhcCCC------C---------CChHHHHHHHHhhhCCC
Q 000315 294 GS---ANNEQFHSVFSEFLKRLTDRIVAVRMS-VLEHVKSCLLTDPS------R---------ADAPQILTALCDRLLDF 354 (1678)
Q Consensus 294 ~s---~~a~~y~~~w~~fL~R~~D~s~~VR~~-~ve~~~~iL~~~p~------~---------~~~~eii~~L~~rL~D~ 354 (1678)
.. -+..+=++-|..++.+-.+.+.-+|+. |++.+...+..... . .+.+.+.+.|......+
T Consensus 166 ~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~ 245 (254)
T PF04826_consen 166 DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHP 245 (254)
T ss_pred HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcCC
Confidence 21 122344666777777777777777765 44444444433210 0 23445667777777889
Q ss_pred hhHHHHHHH
Q 000315 355 DENVRKQVV 363 (1678)
Q Consensus 355 DEkVR~aaV 363 (1678)
|+.||.+||
T Consensus 246 d~ev~~~v~ 254 (254)
T PF04826_consen 246 DPEVKEQVI 254 (254)
T ss_pred CHHHhhhcC
Confidence 999998864
No 111
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=70.62 E-value=5.2 Score=34.30 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=28.6
Q ss_pred HHHhhhhhcCCCCH-HHHHHHHHhhccCChhHHHHHHHHH
Q 000315 366 ICDVACHALNSIPV-ETVKLVAERLRDKSVLVKRYTMERL 404 (1678)
Q Consensus 366 i~~la~~~l~~V~~-elL~~LaeR~RDKK~~VR~eAm~~L 404 (1678)
+..+....+..... .++..+..|+.|.++.||+.|++.|
T Consensus 3 l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 3 LSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 44444445444433 5678999999999999999998764
No 112
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.57 E-value=51 Score=43.68 Aligned_cols=165 Identities=13% Similarity=0.130 Sum_probs=112.7
Q ss_pred hHHHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHH---------------H
Q 000315 244 DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSE---------------F 308 (1678)
Q Consensus 244 ~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~---------------f 308 (1678)
++--++|.++---|+-|-..+|-|-..|..+|+.+-..||..+.++-....-++..--|..|+- .
T Consensus 163 kAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKL 242 (877)
T KOG1059|consen 163 KAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKL 242 (877)
T ss_pred HHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHH
Confidence 4667888888888999999999999999999999999999999888765443443333333321 1
Q ss_pred HhhhcCCChhHHHHHHHHhHHHHh-----------------c-----CCCCC-ChHHHHHHHHhhhCCChhHHHHHHHHH
Q 000315 309 LKRLTDRIVAVRMSVLEHVKSCLL-----------------T-----DPSRA-DAPQILTALCDRLLDFDENVRKQVVAV 365 (1678)
Q Consensus 309 L~R~~D~s~~VR~~~ve~~~~iL~-----------------~-----~p~~~-~~~eii~~L~~rL~D~DEkVR~aaV~a 365 (1678)
.+...=..|..+...++-+-.++. - +|+.. -++-.+..|+..+-|+|.+.+.-.+-+
T Consensus 243 F~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLla 322 (877)
T KOG1059|consen 243 FAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLA 322 (877)
T ss_pred HhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHH
Confidence 233444555555555443333221 1 22221 123345778888999999999999999
Q ss_pred HHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 000315 366 ICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFR 409 (1678)
Q Consensus 366 i~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~ 409 (1678)
++.++..++..|... ...+..-+-||..+||-.|+..|--+-+
T Consensus 323 m~KI~ktHp~~Vqa~-kdlIlrcL~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 323 MSKILKTHPKAVQAH-KDLILRCLDDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred HHHHhhhCHHHHHHh-HHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence 999999998887553 1223455678999999999988754443
No 113
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=70.41 E-value=2.1e+02 Score=37.65 Aligned_cols=258 Identities=17% Similarity=0.235 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhccc-----ccccHHHHHHHHHHhcCCCcH--HHHHHHHHHHHHhh--
Q 000315 147 LVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEES-----EDIQEDLLVILLSALGRNKND--TARRLAMNVIEQCA-- 217 (1678)
Q Consensus 147 Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Es-----e~vp~~lLd~IL~~l~~~k~~--~a~~LA~~vi~~~~-- 217 (1678)
.+.++|.-+...++ .|-.++...++.-|..+|--. ..-..+...+++..|...... .--.+..++|.+..
T Consensus 396 ~fd~vl~pLw~g~~-~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~ 474 (975)
T COG5181 396 QFDEVLCPLWEGAS-QHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTD 474 (975)
T ss_pred HHHHHHHHHHHHHH-hcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCC
Confidence 34444444455443 234455555566665555332 245667888888888533211 33344444443321
Q ss_pred --hhhHHHH-HHHHHHh----hcCCCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhh
Q 000315 218 --GKLEAGI-KQFLVSS----MSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLF 290 (1678)
Q Consensus 218 --dkL~~~I-~q~f~~i----l~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mf 290 (1678)
.+|...| ..||.-. ..+| ..+....-+-.++..=---+|.+.--++-+ ++.+-+..|..++.++.++|
T Consensus 475 tp~~lr~~v~pefF~~fw~rr~A~d-r~~~k~v~~ttvilAk~~g~~~v~~kil~~----~~De~ep~r~m~a~~vsri~ 549 (975)
T COG5181 475 TPWKLRDQVSPEFFSPFWRRRSAGD-RRSYKQVVLTTVILAKMGGDPRVSRKILEY----YSDEPEPYRKMNAGLVSRIF 549 (975)
T ss_pred CHHHHHHhhcHHhhchHHHhhhccc-ccccceeehhHHHHHHHcCChHHHHHHHhh----ccCCcchhhhhhhHHHHHHH
Confidence 2333333 2334322 1222 122222223344444444566666655544 55578899999999999999
Q ss_pred cCCCCC-c----------------------------------------hhhc-HHHHHHHHhhhcCCChhHHHHHHHHhH
Q 000315 291 AVPGSA-N----------------------------------------NEQF-HSVFSEFLKRLTDRIVAVRMSVLEHVK 328 (1678)
Q Consensus 291 s~~~s~-~----------------------------------------a~~y-~~~w~~fL~R~~D~s~~VR~~~ve~~~ 328 (1678)
+.-|.. | .+-| +.+-..-|++.+-+.|.||+...+.++
T Consensus 550 ~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~ 629 (975)
T COG5181 550 SRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMG 629 (975)
T ss_pred HhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 876421 1 1122 678889999999999999999888877
Q ss_pred HHHh--cCCC-CCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhh-hhcCCC--CH-HHHHHHHHhhccCChhHHHHHH
Q 000315 329 SCLL--TDPS-RADAPQILTALCDRLLDFDENVRKQVVAVICDVAC-HALNSI--PV-ETVKLVAERLRDKSVLVKRYTM 401 (1678)
Q Consensus 329 ~iL~--~~p~-~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~-~~l~~V--~~-elL~~LaeR~RDKK~~VR~eAm 401 (1678)
.+.. .+.. ..+..-+-..|-+-|-.-+..|=-.+++|||.+-. +.|... |. .+|-++.--+|.|..+|-..+|
T Consensus 630 sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti 709 (975)
T COG5181 630 SLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTI 709 (975)
T ss_pred HHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHH
Confidence 6432 2221 11111122345555666778888888899988754 556544 22 3566778888999999999999
Q ss_pred HHHHHHHHH
Q 000315 402 ERLADIFRG 410 (1678)
Q Consensus 402 ~~La~LY~~ 410 (1678)
..++.+-..
T Consensus 710 ~lvg~I~~~ 718 (975)
T COG5181 710 ALVGTICMN 718 (975)
T ss_pred HHHHHHHhc
Confidence 999887664
No 114
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.52 E-value=12 Score=47.92 Aligned_cols=141 Identities=21% Similarity=0.192 Sum_probs=85.6
Q ss_pred hhhhhhcccccCCChHHHHHHHHHHHHhhcCCC--CCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhc-----C
Q 000315 262 GVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG--SANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT-----D 334 (1678)
Q Consensus 262 ~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~--s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~-----~ 334 (1678)
+++|.+-.-|.+.+..+|-.|+-.||.+.+... .+++-.+ .+....|.=++.... +.++..+...|.+ +
T Consensus 152 gavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~-g~l~pLl~~l~~~~~---~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 152 GAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSC-GALDPLLRLLNKSDK---LSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred CchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhh-cchHHHHHHhccccc---hHHHHHHHHHHHHHHcCCC
Confidence 455666677889999999999999999998742 0111111 122233333333332 4444444444432 3
Q ss_pred CC--CCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCC----CHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 000315 335 PS--RADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI----PVETVKLVAERLRDKSVLVKRYTMERLAD 406 (1678)
Q Consensus 335 p~--~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V----~~elL~~LaeR~RDKK~~VR~eAm~~La~ 406 (1678)
|. .+.+..++++|...|+..|+.|...||-+++-++-...+.+ ...+...|-+.+.-.+..|+.-|+..+|+
T Consensus 228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGN 305 (514)
T KOG0166|consen 228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGN 305 (514)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccc
Confidence 43 34567899999999999999999999988876654333322 12233345555555556666555555554
No 115
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=68.84 E-value=4.2e+02 Score=35.96 Aligned_cols=57 Identities=16% Similarity=0.282 Sum_probs=30.1
Q ss_pred cCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhh
Q 000315 313 TDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1678)
Q Consensus 313 ~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~ 371 (1678)
.|.-+.|+..++..+..+|.+.|. .+.-|+..|..+|-|++-+|-.-|+--+..|.+
T Consensus 314 ~D~L~~vk~raL~ti~~lL~~kPE--qE~~LL~~lVNKlGDpqnKiaskAsylL~~L~~ 370 (988)
T KOG2038|consen 314 KDPLEEVKKRALKTIYDLLTNKPE--QENNLLVLLVNKLGDPQNKIASKASYLLEGLLA 370 (988)
T ss_pred cccHHHHHHHHHHHHHHHHhCCcH--HHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHh
Confidence 455555666666666555555553 234555555556666665555544444433333
No 116
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=68.57 E-value=59 Score=42.95 Aligned_cols=219 Identities=16% Similarity=0.151 Sum_probs=115.8
Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhhhhHHH-HHHHHH
Q 000315 151 MYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAG-IKQFLV 229 (1678)
Q Consensus 151 lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~vp~~lLd~IL~~l~~~k~~~a~~LA~~vi~~~~dkL~~~-I~q~f~ 229 (1678)
.|..+..++|.-..+.+. .+...+.... -......+++..+....+.+|..+..++|.. .++... ..++|.
T Consensus 348 ~f~~Lv~~lr~l~~~~L~----~l~~~~~~~~--~~~~~r~~~lDal~~aGT~~av~~i~~~I~~--~~~~~~ea~~~l~ 419 (618)
T PF01347_consen 348 KFSRLVRLLRTLSYEDLE----ELYKQLKSKS--KKEQARKIFLDALPQAGTNPAVKFIKDLIKS--KKLTDDEAAQLLA 419 (618)
T ss_dssp HHHHHHHHHTTS-HHHHH----HHHHHHTTS-----HHHHHHHHHHHHHH-SHHHHHHHHHHHHT--T-S-HHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHH----HHHHHHHhhc--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc--CCCCHHHHHHHHH
Confidence 366666666644333322 2333333221 2233444555555444455777777777766 333322 223333
Q ss_pred HhhcCCCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcC----C---------CCC
Q 000315 230 SSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAV----P---------GSA 296 (1678)
Q Consensus 230 ~il~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~----~---------~s~ 296 (1678)
.+... +-+-.+++|..+.+.++......+..+|..|.-.+|.|.-. . ...
T Consensus 420 ~l~~~-----------------~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~ 482 (618)
T PF01347_consen 420 SLPFH-----------------VRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRC 482 (618)
T ss_dssp HHHHT----------------------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS
T ss_pred HHHhh-----------------cCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchh
Confidence 32111 11223445555555555544456778888888888877632 1 223
Q ss_pred chhhcHHHHHHHHhh-hcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCC---hhHHHHHHHHHHHHhhhh
Q 000315 297 NNEQFHSVFSEFLKR-LTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDF---DENVRKQVVAVICDVACH 372 (1678)
Q Consensus 297 ~a~~y~~~w~~fL~R-~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~---DEkVR~aaV~ai~~la~~ 372 (1678)
....|-.-+...|+. ....+..-++.++++++++= +| .++..|...+.+. ...||.+||.++..++..
T Consensus 483 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g--~~------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~ 554 (618)
T PF01347_consen 483 IIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLG--HP------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH 554 (618)
T ss_dssp --GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---G------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT
T ss_pred hHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccC--Cc------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc
Confidence 455665556555553 34567789999999999742 23 4666777766666 899999988888655433
Q ss_pred hcCCCCHHHHHHHHHhhccCC--hhHHHHHHHHHHH
Q 000315 373 ALNSIPVETVKLVAERLRDKS--VLVKRYTMERLAD 406 (1678)
Q Consensus 373 ~l~~V~~elL~~LaeR~RDKK--~~VR~eAm~~La~ 406 (1678)
. |..+...+..-..|.. +.||-.|...|.+
T Consensus 555 ~----~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 555 C----PEKVREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp -----HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred C----cHHHHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 3 4344444455545543 6799998877765
No 117
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=68.39 E-value=9.1 Score=30.30 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=24.2
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000315 382 VKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1678)
Q Consensus 382 L~~LaeR~RDKK~~VR~eAm~~La~LY~~ 410 (1678)
+-.+.+.+.|..+.||..|...|+.+.+.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 44567889999999999999999999863
No 118
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=68.24 E-value=34 Score=46.82 Aligned_cols=91 Identities=23% Similarity=0.414 Sum_probs=73.5
Q ss_pred HHHHHHHHHhhCchhhhhhhhhhcccccC-------CChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCCh
Q 000315 245 YHEVIYDVYRCSPQILSGVVPYLTGELLT-------DQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIV 317 (1678)
Q Consensus 245 ~h~Li~eL~~~~P~lL~~ViP~Le~EL~s-------ed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~ 317 (1678)
+-.++..|+.|-|++-..++-+|..+... -+...++..++.+|.|....-......+ .....+|.-|.=.+.
T Consensus 481 YsRlVAtl~~~M~dvat~lv~~L~~eFr~~~hkK~q~~ietk~~~VrfIsEL~KF~lv~~~~if-~cLk~ll~dF~~hnI 559 (1128)
T KOG2051|consen 481 YSRLVATLSKCMPDVATELVTMLRKEFRSHLHKKAQINIETKLKIVRFISELCKFQLVPKFEIF-SCLKMLLNDFTHHNI 559 (1128)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHhhhhhCccChHHHH-HHHHHHHHhcccccH
Confidence 45789999999999999999999887753 3688899999999999876422222222 356678888888999
Q ss_pred hHHHHHHHHhHHHHhcCCC
Q 000315 318 AVRMSVLEHVKSCLLTDPS 336 (1678)
Q Consensus 318 ~VR~~~ve~~~~iL~~~p~ 336 (1678)
++=+.+++.|+.+|.++|.
T Consensus 560 Em~c~lLE~~GrfLlr~pE 578 (1128)
T KOG2051|consen 560 EMACVLLESCGRFLLRSPE 578 (1128)
T ss_pred HHHHHHHHhcchhhhcChh
Confidence 9999999999999999986
No 119
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=68.16 E-value=4.3e+02 Score=35.71 Aligned_cols=214 Identities=21% Similarity=0.202 Sum_probs=129.2
Q ss_pred cCC-chHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHhc-C--CCcHHHHHHHHHHHHHh
Q 000315 141 DLE-CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALG-R--NKNDTARRLAMNVIEQC 216 (1678)
Q Consensus 141 DL~-~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~vp~~lLd~IL~~l~-~--~k~~~a~~LA~~vi~~~ 216 (1678)
+++ .+|++..+|.+++... .....+|..-.+.|+..+.++--.|+.+|-+.|...+. + .+....+.=|.- |
T Consensus 75 q~d~e~DlV~~~f~hlLRg~-Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~----a 149 (892)
T KOG2025|consen 75 QLDKEEDLVAGTFYHLLRGT-ESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVL----A 149 (892)
T ss_pred ccCchhhHHHHHHHHHHhcc-cCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHH----H
Confidence 454 4779999998888643 44567899999999999999988999999988876552 1 111111111110 0
Q ss_pred hhhhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCC
Q 000315 217 AGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA 296 (1678)
Q Consensus 217 ~dkL~~~I~q~f~~il~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~ 296 (1678)
.. +|.+ + +.+....+-.++..|-+..| +.++|..|.-. ++..
T Consensus 150 Ls--------rlQ~----d--~~dee~~v~n~l~~liqnDp-----------------S~EVRRaaLsn----I~vd--- 191 (892)
T KOG2025|consen 150 LS--------RLQG----D--PKDEECPVVNLLKDLIQNDP-----------------SDEVRRAALSN----ISVD--- 191 (892)
T ss_pred HH--------HHhc----C--CCCCcccHHHHHHHHHhcCC-----------------cHHHHHHHHHh----hccC---
Confidence 11 1211 2 22233445555555544444 57788877542 2221
Q ss_pred chhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCC
Q 000315 297 NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS 376 (1678)
Q Consensus 297 ~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~ 376 (1678)
++|+-.-++|..|.+..+|..+-+.+-.=+ +--...+..-+-.|..-|.|-++-||.|.+.+|..- =+..
T Consensus 192 -----nsTlp~IveRarDV~~anRrlvY~r~lpki--d~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~---Wl~~ 261 (892)
T KOG2025|consen 192 -----NSTLPCIVERARDVSGANRRLVYERCLPKI--DLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILSG---WLRF 261 (892)
T ss_pred -----cccchhHHHHhhhhhHHHHHHHHHHhhhhh--hhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH---Hhhh
Confidence 246667789999999999988777654322 111111223345666778999999999988888442 2333
Q ss_pred CCHHHHHHHHHhhccC-ChhHHHHHHHHHHHHH
Q 000315 377 IPVETVKLVAERLRDK-SVLVKRYTMERLADIF 408 (1678)
Q Consensus 377 V~~elL~~LaeR~RDK-K~~VR~eAm~~La~LY 408 (1678)
....+++.| +|+-=- ...|+..|++.|-..-
T Consensus 262 ~dgni~ElL-~~ldvsnss~vavk~lealf~~v 293 (892)
T KOG2025|consen 262 SDGNILELL-ERLDVSNSSEVAVKALEALFSGV 293 (892)
T ss_pred ccccHHHHH-HHhccccchHHHHHHHHHHHHHH
Confidence 334444433 444333 3478888888877743
No 120
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=67.81 E-value=1.4e+02 Score=36.33 Aligned_cols=67 Identities=21% Similarity=0.255 Sum_probs=39.8
Q ss_pred HHHHHHHhhccccchhhHHHHHHHhh--cchHhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhc
Q 000315 648 EELVNLLKEENEIIKEGILHVLAKAG--GTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAIT 714 (1678)
Q Consensus 648 ~~Li~lL~~~~~~~~e~aLkiLak~~--k~i~e~~~~~~s~l~~~L~~lal~GtpkqAKyAVr~Laa~~ 714 (1678)
.+.++.|.+......+.+|..|.++- .++.+.+......+...+.+....|++++.-.|.++++.+.
T Consensus 46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ 114 (309)
T PF05004_consen 46 KEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLA 114 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 34455555555455667777766442 22333332223346666777777899888889988865543
No 121
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=67.29 E-value=2.7e+02 Score=38.37 Aligned_cols=128 Identities=22% Similarity=0.265 Sum_probs=94.1
Q ss_pred CCCCcchHHHHHHHHHhhCchhh-----hhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHH-HHHhh
Q 000315 238 PGHSHIDYHEVIYDVYRCSPQIL-----SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFS-EFLKR 311 (1678)
Q Consensus 238 ~~~~~~~~h~Li~eL~~~~P~lL-----~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~-~fL~R 311 (1678)
++...-.+|..+.-+-...|.-. ...+|.|=+-|.-.|..+|+-+++++-..+...+ .+...|-+|+- .+|.=
T Consensus 880 ~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~-tL~t~~~~Tlvp~lLsl 958 (1030)
T KOG1967|consen 880 PGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE-TLQTEHLSTLVPYLLSL 958 (1030)
T ss_pred CccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc-ccchHHHhHHHHHHHhc
Confidence 33344457777777777777521 2356677788999999999999999998887655 57777766654 66655
Q ss_pred hcCCC---hhHHHHHHHHhHHHHhcCCCC---CChHHHHHHHHhhhCCChhHHHHHHHHHH
Q 000315 312 LTDRI---VAVRMSVLEHVKSCLLTDPSR---ADAPQILTALCDRLLDFDENVRKQVVAVI 366 (1678)
Q Consensus 312 ~~D~s---~~VR~~~ve~~~~iL~~~p~~---~~~~eii~~L~~rL~D~DEkVR~aaV~ai 366 (1678)
..|-+ ..||...+++...+..--|.+ ....+++.+|...|-|+--.||.+||.+=
T Consensus 959 s~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 959 SSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred CCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 55555 789999999987755533432 23468999999999999999999987653
No 122
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=65.06 E-value=11 Score=35.54 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=27.1
Q ss_pred cCceEEEecCCC---CceEEEEEEeecCCCCeeEEEccC
Q 000315 1380 IGYRIKVWWPMD---KQFYEGTIKSYDPIKKKHVILYDD 1415 (1678)
Q Consensus 1380 vG~rv~V~Wp~D---~~~Y~G~V~~y~~~~~~H~v~YdD 1415 (1678)
.|.+|.|.--.+ .+||.|+|....... +..|.|+|
T Consensus 3 ~G~~VEV~s~e~g~~gaWf~a~V~~~~~~~-~~~V~Y~~ 40 (68)
T PF05641_consen 3 KGDEVEVSSDEDGFRGAWFPATVLKENGDD-KYLVEYDD 40 (68)
T ss_dssp TT-EEEEEE-SBTT--EEEEEEEEEEETT--EEEEEETT
T ss_pred CCCEEEEEEcCCCCCcEEEEEEEEEeCCCc-EEEEEECC
Confidence 588999987664 699999999999876 99999964
No 123
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=65.06 E-value=4.7e+02 Score=37.29 Aligned_cols=136 Identities=18% Similarity=0.148 Sum_probs=91.0
Q ss_pred ccCCC-hHHHHHHHHHHHHh---hcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHH
Q 000315 271 LLTDQ-LDTRLKAVGLVGDL---FAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTA 346 (1678)
Q Consensus 271 L~sed-~~~Rl~At~llG~m---fs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~ 346 (1678)
|.++. .-+|..-++-++.+ |+..++ +.-+..-.+.=.||++...|.++.+.+..+-.-=.-+...+=|+..
T Consensus 586 Llsd~~~~Vkr~Lle~i~~LC~FFGk~ks-----ND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPL 660 (1431)
T KOG1240|consen 586 LLSDSPPIVKRALLESIIPLCVFFGKEKS-----NDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPL 660 (1431)
T ss_pred HHcCCchHHHHHHHHHHHHHHHHhhhccc-----ccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHH
Confidence 33443 46777766666665 444332 2223333344468999999999999987532211112223457799
Q ss_pred HHhhhCCChhHHHHHHHHHHHHhhhhhc-CCC-CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHH
Q 000315 347 LCDRLLDFDENVRKQVVAVICDVACHAL-NSI-PVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1678)
Q Consensus 347 L~~rL~D~DEkVR~aaV~ai~~la~~~l-~~V-~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~ 411 (1678)
|..-|.|.+|-|=..|..++.-+....+ ..- =.++++.++--+.--+.=||+.++.-++.+|+..
T Consensus 661 l~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 661 LQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred HHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence 9999999999998887777766655332 221 2257788888888888889999999999888864
No 124
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=64.86 E-value=23 Score=35.61 Aligned_cols=84 Identities=18% Similarity=0.219 Sum_probs=71.6
Q ss_pred cccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHH
Q 000315 268 TGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTAL 347 (1678)
Q Consensus 268 e~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L 347 (1678)
-.+|....+++|-.+..+|.+++..+. .....-+.+..-|+.=..|-++=|=+.+|+....+...+|. ++++.|
T Consensus 9 l~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~-----~vl~~L 82 (92)
T PF10363_consen 9 LSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD-----EVLPIL 82 (92)
T ss_pred HHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH-----HHHHHH
Confidence 345677889999999999999999876 34556789999999999999999999999999988877773 688999
Q ss_pred HhhhCCChhH
Q 000315 348 CDRLLDFDEN 357 (1678)
Q Consensus 348 ~~rL~D~DEk 357 (1678)
.+...|.+++
T Consensus 83 ~~~y~~~~~~ 92 (92)
T PF10363_consen 83 LDEYADPSEQ 92 (92)
T ss_pred HHHHhCcccC
Confidence 9988887753
No 125
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=64.14 E-value=1.4e+02 Score=36.53 Aligned_cols=150 Identities=16% Similarity=0.184 Sum_probs=92.9
Q ss_pred hhhhhcccccCCChHHHHHHHHHHHHhhcC--CCCCchhhcHHHHHHHHhhhcCCC--hhHHHHHHHHhHHHHhcC-CCC
Q 000315 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAV--PGSANNEQFHSVFSEFLKRLTDRI--VAVRMSVLEHVKSCLLTD-PSR 337 (1678)
Q Consensus 263 ViP~Le~EL~sed~~~Rl~At~llG~mfs~--~~s~~a~~y~~~w~~fL~R~~D~s--~~VR~~~ve~~~~iL~~~-p~~ 337 (1678)
++.+++.-|+......+.+|.+++|-+.-. +|..-..-|..+...+..-..|.+ +.+|..|+.+.+-+..-. .+.
T Consensus 87 L~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~ 166 (309)
T PF05004_consen 87 LLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDE 166 (309)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCCh
Confidence 344555556666668889999999977544 345555666666665555556655 578999988776543322 122
Q ss_pred CChHHHHHHHHh---h-hCCC-----------hhHHHHHHHHHHHHhhhhhc----CCCCHHHHHHHHHhhccCChhHHH
Q 000315 338 ADAPQILTALCD---R-LLDF-----------DENVRKQVVAVICDVACHAL----NSIPVETVKLVAERLRDKSVLVKR 398 (1678)
Q Consensus 338 ~~~~eii~~L~~---r-L~D~-----------DEkVR~aaV~ai~~la~~~l----~~V~~elL~~LaeR~RDKK~~VR~ 398 (1678)
.+..++++.|.. . .... +..|..+|+.+.+=|..... ...-.+.+..|.+.+--....||.
T Consensus 167 ~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRi 246 (309)
T PF05004_consen 167 EETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRI 246 (309)
T ss_pred hHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 333333344441 1 1122 35688888888766653221 111223455667777777889999
Q ss_pred HHHHHHHHHHHHHh
Q 000315 399 YTMERLADIFRGCC 412 (1678)
Q Consensus 399 eAm~~La~LY~~~~ 412 (1678)
.|=+.||-||-..+
T Consensus 247 AAGEaiAll~E~~~ 260 (309)
T PF05004_consen 247 AAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999865
No 126
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=63.20 E-value=5.4e+02 Score=35.16 Aligned_cols=165 Identities=18% Similarity=0.187 Sum_probs=82.4
Q ss_pred hhccHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHHhcCCCc---hHHHHHHHHHhhhc------cccChhHHHHHHHHHH
Q 000315 545 QLKDANVWKILMNLLDSNTSFDQA-FTGRDDLLKILGAKHR---LYDFLSTLSMKCSY------LLFNKEHVKEILLEVA 614 (1678)
Q Consensus 545 klnD~Ri~kLLk~~idp~td~~tv-~~a~kELlkkL~~k~~---~~e~l~~Ll~R~S~------lifNks~V~~LL~~v~ 614 (1678)
+.+|+=++++||.+...+...+.. ......|++.+..... ..+.+-+|-.-..+ ++-+-.-|+.|.+.+.
T Consensus 464 ~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~ 543 (708)
T PF05804_consen 464 KTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLK 543 (708)
T ss_pred hcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhC
Confidence 457889999999998876444333 3445566666654322 34445544332211 2323455666666553
Q ss_pred hhcccchhhhHHHHHHHHHHHHhhC-----CcCcc--ccHHHHHHHHhhccccchhhHHHHHHHhhcchHhhhh----cc
Q 000315 615 AQKSSANAQFMQSCMDILGILARFS-----PLLLG--GTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLA----AT 683 (1678)
Q Consensus 615 ~~~~~~~~~~~~~a~eLL~~IS~~~-----P~lFk--~~v~~Li~lL~~~~~~~~e~aLkiLak~~k~i~e~~~----~~ 683 (1678)
.. ...++ ...+....++..+ ..++. +.+..|+++|....+ --+-+||+++-+...+..... -.
T Consensus 544 ~g-~~~dD----l~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqe-DdE~VlQil~~f~~ll~h~~tr~~ll~ 617 (708)
T PF05804_consen 544 PG-ASEDD----LLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQE-DDEIVLQILYVFYQLLFHEETREVLLK 617 (708)
T ss_pred CC-CCChH----HHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCc-hHHHHHHHHHHHHHHHcChHHHHHHHh
Confidence 21 11111 1223332333221 12221 447899999987433 235688888877654432110 00
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHHHHhhcC
Q 000315 684 SSSVDLLLERLCLEGSRRQAKYAVHALAAITK 715 (1678)
Q Consensus 684 ~s~l~~~L~~lal~GtpkqAKyAVr~Laa~~~ 715 (1678)
......-|-++.-..++..+|.|=.||-.+..
T Consensus 618 ~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e 649 (708)
T PF05804_consen 618 ETEIPAYLIDLMHDKNAEIRKVCDNALDIIAE 649 (708)
T ss_pred ccchHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 11233334344444455666666666554443
No 127
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=62.40 E-value=62 Score=42.64 Aligned_cols=188 Identities=17% Similarity=0.245 Sum_probs=99.5
Q ss_pred HHHHHHhc-cCCCCCCCCChhhHHHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhc
Q 000315 102 FQLIVGTF-SGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLE 180 (1678)
Q Consensus 102 F~l~v~qf-~~L~d~~~p~f~~~~~lLe~lA~vks~vl~~DL~~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~ 180 (1678)
|..++.+| ......+.+.-.+-..+ |-....||-++|-.|..||..+++.-.- +.+..+.......+..++.
T Consensus 31 Y~~L~~~l~~~~~~~d~~~~~~l~~~---L~~L~~~Vs~Ld~~~~~LV~ail~~~W~----~~~~~~v~~y~~Fl~~Lvs 103 (563)
T PF05327_consen 31 YDELVEQLSDPSESKDAISVSQLIRW---LKALSSCVSLLDSSCKQLVEAILSLNWL----GRDEDFVEAYIQFLINLVS 103 (563)
T ss_dssp HHHHHHHHHS-TT-TTS--HHHHHHH---HHHHHHGGGGG-SCCHHHHHHHHT-TGG----GS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccccCcccccHHHHHHH---HHHHHHHHHHhhhHHHHHHHHHHcCCCC----CCCHHHHHHHHHHHHHHHH
Confidence 45555555 33333334333343444 4445567777887789999888877332 2255677777778888877
Q ss_pred ccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCCCCC--CCCcchHHHHHHHHHhhCch
Q 000315 181 ESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRP--GHSHIDYHEVIYDVYRCSPQ 258 (1678)
Q Consensus 181 Ese~vp~~lLd~IL~~l~~~k~~~a~~LA~~vi~~~~dkL~~~I~q~f~~il~~d~~~--~~~~~~~h~Li~eL~~~~P~ 258 (1678)
....--..+|+.|...|.+.....+-. .+.... ......+|.+|..|-+++|.
T Consensus 104 a~~~yl~~vl~~LV~~f~p~~~~~~~~-------------------------~~~~~~~~~~~~~~vH~~L~~Il~lvP~ 158 (563)
T PF05327_consen 104 AQPKYLSPVLSMLVKNFIPPPSSIAEW-------------------------PGCPPEKRREIYERVHDALQKILRLVPT 158 (563)
T ss_dssp H-GGGHHHHHHHHHHGGGS-HHHHHH----------------------------------------HHHHHHHHHHH-GG
T ss_pred hhHHHHHHHHHHHHHhccCCCcccccc-------------------------chhhhhhhhhhHHHHHHHHHHHHHHcCC
Confidence 777777888888888886643210000 111111 11223689999999999999
Q ss_pred hhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHH
Q 000315 259 ILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSV 323 (1678)
Q Consensus 259 lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ 323 (1678)
....++|.|....=.-....+...+ -+-.|+...+. ...--..+|..-+.|...++++|.+.|
T Consensus 159 s~~~L~~~l~~~FP~~~~~~~~~~~-Yv~NlL~l~~Y-~P~L~~~Il~lIi~rLi~iDVeiq~~~ 221 (563)
T PF05327_consen 159 SPSFLIPILVQNFPHKRKSKDEHVN-YVRNLLRLTEY-CPELRSDILSLIIERLIKIDVEIQIEL 221 (563)
T ss_dssp GHHHHHHHHHHTS--TTS-HHHHHH-HHHHHHHHHCC--GGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCcCCCCChHHHHH-HHHHHHHHHcc-hHHHHHHHHHHHHHHHHHHhcccccCc
Confidence 9988888877766554444433322 22222221110 123334666666666666666555544
No 128
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=62.31 E-value=85 Score=40.13 Aligned_cols=178 Identities=14% Similarity=0.249 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHhhcCCC-CCCChhH---HHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhcccCCch---H
Q 000315 74 LLVATCICEITRITAPE-APYSDDV---LKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECD---E 146 (1678)
Q Consensus 74 ~~vAcCLadIlRI~APd-aPytd~q---LkdIF~l~v~qf~~L~d~~~p~f~~~~~lLe~lA~vks~vl~~DL~~~---~ 146 (1678)
-|+.-|+.-|+=++.-+ .||.+.. |..|+..+. .+|++|.|. +|+.|+++..=- .+++-+.+ .
T Consensus 44 eylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~------kNPsnP~Fn--HylFEsi~~lir--~~~~~~~~~v~~ 113 (435)
T PF03378_consen 44 EYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVS------KNPSNPRFN--HYLFESIGALIR--FVCEADPEAVSQ 113 (435)
T ss_dssp HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHH------TS---HHHH--HHHHHHHHHHHH--HS-GGGHH---H
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH------hCCCCcchh--hhHHHHHHHHHH--hccCCChhHHHH
Confidence 36777776666555444 6775532 333333322 357888775 678899986422 23332222 4
Q ss_pred HHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccc--cccH---HHHHHHHHHhcCCCc---HHHHHHHHHHHHHhhh
Q 000315 147 LVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESE--DIQE---DLLVILLSALGRNKN---DTARRLAMNVIEQCAG 218 (1678)
Q Consensus 147 Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese--~vp~---~lLd~IL~~l~~~k~---~~a~~LA~~vi~~~~d 218 (1678)
+-..||-.|..+...+ -.....+...||+.+++-.. .+|+ .++..||+...-... .+.-+|-...|.+++.
T Consensus 114 ~E~~L~P~f~~ILq~d-V~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~ 192 (435)
T PF03378_consen 114 FEEALFPPFQEILQQD-VQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPS 192 (435)
T ss_dssp HHHHHHHHHHHHHHTT--TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCch
Confidence 5555555555555432 22455666778888888766 5665 334444432211111 1445677888888876
Q ss_pred hhH--H---HHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhCch-hhhhhhhh
Q 000315 219 KLE--A---GIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQ-ILSGVVPY 266 (1678)
Q Consensus 219 kL~--~---~I~q~f~~il~~d~~~~~~~~~~h~Li~eL~~~~P~-lL~~ViP~ 266 (1678)
.+. . .|-.-|.-++.++. .+...++|+..|...+|. .|...+|+
T Consensus 193 ~i~~~~~l~~iLgvFQkLi~sk~----~D~~gF~LL~~iv~~~p~~~l~~yl~~ 242 (435)
T PF03378_consen 193 FIVANNQLEPILGVFQKLIASKA----NDHYGFDLLESIVENLPPEALEPYLKQ 242 (435)
T ss_dssp G----S-CHHHHHHHHHHHT-TT----CHHHHHHHHHHHHHHS-HHHHGGGHHH
T ss_pred hhcchhhHHHHHHHHHHHHCCCC----cchHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 552 1 12223344554431 222356788888877776 45555544
No 129
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=61.33 E-value=59 Score=35.90 Aligned_cols=138 Identities=15% Similarity=0.167 Sum_probs=86.6
Q ss_pred ChhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhC-CcCcccc----HHHHHHHHhhccc-cchhhHHHHHHHhhcc
Q 000315 602 NKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFS-PLLLGGT----EEELVNLLKEENE-IIKEGILHVLAKAGGT 675 (1678)
Q Consensus 602 Nks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~-P~lFk~~----v~~Li~lL~~~~~-~~~e~aLkiLak~~k~ 675 (1678)
+++.+..+..++..--.+.+....-.+..|+..+...+ |++|..| +..|+.+|+..++ .+.+.++.+|..+-..
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 67777777777654333322222335678999999998 9999666 3667777776443 3556677777655332
Q ss_pred hHhhhhcccchHHHHHHHHhhc-CChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhhcCCCchHHHHHHHHHhhcc
Q 000315 676 IREQLAATSSSVDLLLERLCLE-GSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAM 754 (1678)
Q Consensus 676 i~e~~~~~~s~l~~~L~~lal~-GtpkqAKyAVr~Laa~~~~~~~~~~~~L~~~L~~~L~~~~~l~t~L~sLg~Iaq~aP 754 (1678)
++.. +. +..+ +||...++...+|..+.+ ..-....|.+|+.+-+..|
T Consensus 99 ~~~~-p~-----------l~Rei~tp~l~~~i~~ll~l~~~--------------------~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 99 IRGK-PT-----------LTREIATPNLPKFIQSLLQLLQD--------------------SSCPETALDALATLLPHHP 146 (165)
T ss_pred hcCC-Cc-----------hHHHHhhccHHHHHHHHHHHHhc--------------------cccHHHHHHHHHHHHHHCC
Confidence 2222 11 1111 356666666555553322 0123467888999999999
Q ss_pred cccccchHHHHHHHHHh
Q 000315 755 PVFETRESEIEEFIKSK 771 (1678)
Q Consensus 755 ~vfe~~~~eI~~fIik~ 771 (1678)
..|-.+...|..+++.-
T Consensus 147 tt~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 147 TTFRPFANKIESALLSL 163 (165)
T ss_pred ccccchHHHHHHHHHHH
Confidence 99999999998887743
No 130
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins []. Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....
Probab=60.29 E-value=18 Score=36.24 Aligned_cols=49 Identities=16% Similarity=0.142 Sum_probs=39.5
Q ss_pred CCccccCceEEEecCCCCceEEEEEEeecCCCCeeEEEc-cCCcceeeecC
Q 000315 1375 NIEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILY-DDEDVEVLRLD 1424 (1678)
Q Consensus 1375 ~~~~lvG~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~Y-dDgd~E~l~L~ 1424 (1678)
.....+|..+-+.=+.|..||.|.| ..+...+.-.|.| |-|..+.+...
T Consensus 49 ~~~~~~~~~~~~~~~~~~~w~Ra~I-~~~~~~~~~~V~~iD~G~~~~v~~~ 98 (121)
T PF00567_consen 49 SPESNPGEGCLCVVSEDGRWYRAVI-TVDIDENQYKVFLIDYGNTEKVSAS 98 (121)
T ss_dssp CST--TTEEEEEEETTTSEEEEEEE-EEEECTTEEEEEETTTTEEEEEEGG
T ss_pred ccccccCCEEEEEEecCCceeeEEE-EEecccceeEEEEEecCceEEEcHH
Confidence 3455688888888899999999999 6777788889998 99999997664
No 131
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=59.96 E-value=91 Score=35.27 Aligned_cols=130 Identities=17% Similarity=0.158 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHhhcC-CCCCc---------------hhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcC-------
Q 000315 278 TRLKAVGLVGDLFAV-PGSAN---------------NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD------- 334 (1678)
Q Consensus 278 ~Rl~At~llG~mfs~-~~s~~---------------a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~------- 334 (1678)
+|+.|..+|+.++.. +.-.+ ....++++...+ .|.++.||++.+.....+|...
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il---~Dp~~kvR~aA~~~l~~lL~gsk~~L~~A 78 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCIL---KDPSPKVRAAAASALAALLEGSKPFLAQA 78 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHH---cCCchhHHHHHHHHHHHHHHccHHHHHHH
Confidence 799999999999876 32111 112244444443 4999999999999998877532
Q ss_pred -----CCC---CC---hHHHHHHHHhhh-----CCChhHHHHHHHHHHHHhhh-hhcCCCCHHH----HHHHHHhhccCC
Q 000315 335 -----PSR---AD---APQILTALCDRL-----LDFDENVRKQVVAVICDVAC-HALNSIPVET----VKLVAERLRDKS 393 (1678)
Q Consensus 335 -----p~~---~~---~~eii~~L~~rL-----~D~DEkVR~aaV~ai~~la~-~~l~~V~~el----L~~LaeR~RDKK 393 (1678)
+.+ .. ...++..+...| ...+-.+-.+.++++..+.. ..++.++.++ +..+..+++.+.
T Consensus 79 e~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d 158 (182)
T PF13251_consen 79 EESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRD 158 (182)
T ss_pred HhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCC
Confidence 110 11 123444444443 45566677788888877765 3356677765 457888999999
Q ss_pred hhHHHHHHHHHHHHHHH
Q 000315 394 VLVKRYTMERLADIFRG 410 (1678)
Q Consensus 394 ~~VR~eAm~~La~LY~~ 410 (1678)
+.||..++..++-+...
T Consensus 159 ~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 159 PNVRVAALSCLGALLSV 175 (182)
T ss_pred CcHHHHHHHHHHHHHcC
Confidence 99999999999988764
No 132
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=59.92 E-value=2.5e+02 Score=39.15 Aligned_cols=121 Identities=16% Similarity=0.130 Sum_probs=78.4
Q ss_pred ChHHHHHHHHHHHHhhcCCCC-CchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCC
Q 000315 275 QLDTRLKAVGLVGDLFAVPGS-ANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLD 353 (1678)
Q Consensus 275 d~~~Rl~At~llG~mfs~~~s-~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D 353 (1678)
+.-+|+=+.-+||+++..-.. .+.=..-......+.=..|-.|+||++.|-+.+.+|.+-.+.-+ --....+.+.|
T Consensus 613 ~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fd---e~~~~~~~~~~ 689 (1387)
T KOG1517|consen 613 EPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFD---EQTLVVEEEID 689 (1387)
T ss_pred cHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccc---hhhhhhhhhhc
Confidence 688999999999999986432 22223334455566677899999999999999998886422111 11122233444
Q ss_pred -ChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHh
Q 000315 354 -FDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCC 412 (1678)
Q Consensus 354 -~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~ 412 (1678)
.+++++.+-. ....+-.++.++.|=.+-||.+-...|+.+-..|.
T Consensus 690 l~~~~~~~E~~--------------i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~ 735 (1387)
T KOG1517|consen 690 LDDERTSIEDL--------------IIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYV 735 (1387)
T ss_pred chhhhhhHHHH--------------HHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhH
Confidence 4444443311 11112356789999999999998888888766553
No 133
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.87 E-value=6e+02 Score=34.62 Aligned_cols=157 Identities=16% Similarity=0.214 Sum_probs=103.2
Q ss_pred hhCc-hhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCc-hhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHH
Q 000315 254 RCSP-QILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSAN-NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCL 331 (1678)
Q Consensus 254 ~~~P-~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~-a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL 331 (1678)
+++- +++-.|+|++|..++++|=..|-.|+-.+|-++-+|..+- ..-=+..-..-+.-..|.+.-||-.-.-..+.|.
T Consensus 355 ~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~ 434 (859)
T KOG1241|consen 355 QCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIA 434 (859)
T ss_pred HHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHH
Confidence 4444 3455699999999999999999999999999998885331 1111333344445556888888865555556666
Q ss_pred hcCCCC----CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCH------------HHHH---HHHHhhccC
Q 000315 332 LTDPSR----ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV------------ETVK---LVAERLRDK 392 (1678)
Q Consensus 332 ~~~p~~----~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~------------elL~---~LaeR~RDK 392 (1678)
-..|+. ...+.++..|..=|+| ..+|=..+|-++..++.......+. .++. .+++|.-=-
T Consensus 435 d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgn 513 (859)
T KOG1241|consen 435 DFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGN 513 (859)
T ss_pred hhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccc
Confidence 555432 1123556677777776 5788888888888887433322211 1222 344554434
Q ss_pred ChhHHHHHHHHHHHHHHHH
Q 000315 393 SVLVKRYTMERLADIFRGC 411 (1678)
Q Consensus 393 K~~VR~eAm~~La~LY~~~ 411 (1678)
-...|..|-+.|+.+-+..
T Consensus 514 qsNLR~AAYeALmElIk~s 532 (859)
T KOG1241|consen 514 QSNLRSAAYEALMELIKNS 532 (859)
T ss_pred hhhHHHHHHHHHHHHHHcC
Confidence 5689999999999988853
No 134
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=58.50 E-value=19 Score=38.01 Aligned_cols=42 Identities=21% Similarity=0.407 Sum_probs=36.1
Q ss_pred CceEEEecCCCCceEEEEEEeecCCCCeeEEEccCCcceeeec
Q 000315 1381 GYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLRL 1423 (1678)
Q Consensus 1381 G~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdDgd~E~l~L 1423 (1678)
|.+|=..|+.|.-||.|+|...- ..+.-.|.+++|+.+.+..
T Consensus 1 g~~VlAR~~~DG~YY~GtV~~~~-~~~~~lV~f~~~~~~~v~~ 42 (124)
T PF15057_consen 1 GQKVLARREEDGFYYPGTVKKCV-SSGQFLVEFDDGDTQEVPI 42 (124)
T ss_pred CCeEEEeeCCCCcEEeEEEEEcc-CCCEEEEEECCCCEEEeCh
Confidence 77889999999999999999998 6677888888888777654
No 135
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=56.80 E-value=6e+02 Score=33.66 Aligned_cols=195 Identities=22% Similarity=0.209 Sum_probs=113.7
Q ss_pred hHHHHHHHHHhhhhhhhcccCC-chHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHhcC-
Q 000315 122 RRVVILETLAKYRSCVVMLDLE-CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGR- 199 (1678)
Q Consensus 122 ~~~~lLe~lA~vks~vl~~DL~-~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~vp~~lLd~IL~~l~~- 199 (1678)
+-+..|.++-++ .|.|.| ..+++...|.+++..+ +..-++|..-.+.||..+.+--..|...+-..++..+..
T Consensus 66 Ril~fl~~f~~Y----~~~~dpeg~~~V~~~~~h~lRg~-eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R 140 (885)
T COG5218 66 RILSFLKRFFEY----DMPDDPEGEELVAGTFYHLLRGT-ESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSER 140 (885)
T ss_pred HHHHHHHHHHHh----cCCCChhhhHHHHHHHHHHHhcc-cCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 444455444443 467777 6899999988887654 344567998889999988887777777777766655521
Q ss_pred --CCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhcccccCCChH
Q 000315 200 --NKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLD 277 (1678)
Q Consensus 200 --~k~~~a~~LA~~vi~~~~dkL~~~I~q~f~~il~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~ 277 (1678)
.+..+.+.=|..+ -.||.++ .+ +...+.-.++..+-+..|+ .+
T Consensus 141 ~~DRE~~VR~eAv~~------------L~~~Qe~-~~-----neen~~~n~l~~~vqnDPS-----------------~E 185 (885)
T COG5218 141 LFDREKAVRREAVKV------------LCYYQEM-EL-----NEENRIVNLLKDIVQNDPS-----------------DE 185 (885)
T ss_pred HhcchHHHHHHHHHH------------HHHHHhc-cC-----ChHHHHHHHHHHHHhcCcH-----------------HH
Confidence 1111222212111 1233332 11 1223344466555555553 56
Q ss_pred HHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhH
Q 000315 278 TRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDEN 357 (1678)
Q Consensus 278 ~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEk 357 (1678)
+|..|.- +++. -++|+-.-|.|..|.+...|..+-..+-.-+---.+.+..+.|. .+.--|.|-|..
T Consensus 186 VRr~all----ni~v--------dnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~-l~ewgl~dRe~s 252 (885)
T COG5218 186 VRRLALL----NISV--------DNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRIL-LMEWGLLDREFS 252 (885)
T ss_pred HHHHHHH----Heee--------CCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceeh-hhhhcchhhhhh
Confidence 7777642 2222 12467788999999999999877665422110000111111222 455568999999
Q ss_pred HHHHHHHHHHHh
Q 000315 358 VRKQVVAVICDV 369 (1678)
Q Consensus 358 VR~aaV~ai~~l 369 (1678)
||.|++.+|..-
T Consensus 253 v~~a~~d~ia~~ 264 (885)
T COG5218 253 VKGALVDAIASA 264 (885)
T ss_pred HHHHHHHHHHHH
Confidence 999999998543
No 136
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=56.02 E-value=6.2e+02 Score=33.58 Aligned_cols=121 Identities=16% Similarity=0.163 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccccchhhHHHHHHHhhcchHhhhhcc
Q 000315 604 EHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAAT 683 (1678)
Q Consensus 604 s~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v~~Li~lL~~~~~~~~e~aLkiLak~~k~i~e~~~~~ 683 (1678)
.|.......+...+.+. ..-.-|-+++--.-+.||++=...+..+.++++|++..+.-.+++.|-.+++.-++..
T Consensus 20 ~~~~~y~~il~~~kg~~--k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v--- 94 (556)
T PF05918_consen 20 QHEEDYKEILDGVKGSP--KEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHV--- 94 (556)
T ss_dssp GGHHHHHHHHHGGGS-H--HHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-H---
T ss_pred cCHHHHHHHHHHccCCH--HHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHH---
Confidence 45554444443443322 2233455777778888899888888999999998877666677777766555422222
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHHHHHH
Q 000315 684 SSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLV 730 (1678)
Q Consensus 684 ~s~l~~~L~~lal~GtpkqAKyAVr~Laa~~~~~~~~~~~~L~~~L~ 730 (1678)
+.+..+|-.+=....+.+....-++|+.+.+.+...++..|+..|.
T Consensus 95 -~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~ 140 (556)
T PF05918_consen 95 -SKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIE 140 (556)
T ss_dssp -HHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3466666666666666666666566655554433334444555544
No 137
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=55.78 E-value=36 Score=46.00 Aligned_cols=135 Identities=18% Similarity=0.241 Sum_probs=101.3
Q ss_pred CChHHHHHHHHHHHHhhcCCC-CCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhC
Q 000315 274 DQLDTRLKAVGLVGDLFAVPG-SANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLL 352 (1678)
Q Consensus 274 ed~~~Rl~At~llG~mfs~~~-s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~ 352 (1678)
|--+-|..|..++|.++..-. -.+-...++.+..+ ..|..|.||.++.+.++.+-..-+.....+.++..+..-+.
T Consensus 210 d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~l---c~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~ 286 (759)
T KOG0211|consen 210 DWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSL---CQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLR 286 (759)
T ss_pred hhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhh---ccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhh
Confidence 334478888888888886533 22334555555554 57999999999999988765544444455678889999999
Q ss_pred CChhHHHHHHHHHHHHhhh-hhcC-CCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHH
Q 000315 353 DFDENVRKQVVAVICDVAC-HALN-SIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1678)
Q Consensus 353 D~DEkVR~aaV~ai~~la~-~~l~-~V~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~ 411 (1678)
|--+-||.+|+.....+.. ..-. .+-..+..++..-.-|+.+.||--.+.....+|...
T Consensus 287 DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~ 347 (759)
T KOG0211|consen 287 DDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAV 347 (759)
T ss_pred cchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHh
Confidence 9999999999999877654 2222 333446678888899999999999999999999975
No 138
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=54.03 E-value=8.5e+02 Score=34.54 Aligned_cols=152 Identities=13% Similarity=0.098 Sum_probs=103.6
Q ss_pred Cchhhhhhh-hhhcccccCCChHHHHHHHHHHHHhhcCCCCCc-h-hhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHh
Q 000315 256 SPQILSGVV-PYLTGELLTDQLDTRLKAVGLVGDLFAVPGSAN-N-EQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLL 332 (1678)
Q Consensus 256 ~P~lL~~Vi-P~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~-a-~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~ 332 (1678)
-|.....|+ +.++..+.+=|+.+|.+|-.-|-+ ++.....+ + ..+|++-..++. +++.-|..++.+++.++.
T Consensus 537 ~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~-Ls~~~pk~~a~~~L~~lld~~ls----~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 537 FSGYREPVFNHLLTKKVCHWDVKIRELAAYALHK-LSLTEPKYLADYVLPPLLDSTLS----KDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred hhhHHHHHHHHHHhcccccccHHHHHHHHHHHHH-HHHhhHHhhcccchhhhhhhhcC----CChHHhhhhHHHHHHHHH
Confidence 444555544 345666888999999999999998 44332222 2 345666665555 588899999998888876
Q ss_pred cCCCC------------CChHHHHHHHHhhhCCCh--hHHHHHHHHHHHHhhhhhcCC----CCHHHHHHHHHhhccCCh
Q 000315 333 TDPSR------------ADAPQILTALCDRLLDFD--ENVRKQVVAVICDVACHALNS----IPVETVKLVAERLRDKSV 394 (1678)
Q Consensus 333 ~~p~~------------~~~~eii~~L~~rL~D~D--EkVR~aaV~ai~~la~~~l~~----V~~elL~~LaeR~RDKK~ 394 (1678)
+-... ....+++..++++-.+.- +..|.++++.|..+.-..... +-......++.-+++-+
T Consensus 612 ~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n- 690 (1133)
T KOG1943|consen 612 ALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN- 690 (1133)
T ss_pred HhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-
Confidence 53211 111234566777777766 899999999998776655442 23334445666665665
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q 000315 395 LVKRYTMERLADIFRGCCL 413 (1678)
Q Consensus 395 ~VR~eAm~~La~LY~~~~~ 413 (1678)
.+|..|...+++++..|+.
T Consensus 691 ~i~~~av~av~~l~s~y~~ 709 (1133)
T KOG1943|consen 691 QIRDAAVSAVSDLVSTYVK 709 (1133)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999874
No 139
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=53.15 E-value=3.7e+02 Score=31.43 Aligned_cols=128 Identities=17% Similarity=0.060 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhhCCcCccccHHHHHHHHhhc------cccchhhHHHHHHHhhcchHhhhhcccchHHHHHHHHh-hcC
Q 000315 626 QSCMDILGILARFSPLLLGGTEEELVNLLKEE------NEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLC-LEG 698 (1678)
Q Consensus 626 ~~a~eLL~~IS~~~P~lFk~~v~~Li~lL~~~------~~~~~e~aLkiLak~~k~i~e~~~~~~s~l~~~L~~la-l~G 698 (1678)
..++++|..+-...|..| +..+.++..+.-. +.......+-.++..-..+....|.....+...+..++ ...
T Consensus 56 ~~~~rLl~~lw~~~~r~f-~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~~~~ 134 (234)
T PF12530_consen 56 YVALRLLTLLWKANDRHF-PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGVDLLPLLSGCLNQSC 134 (234)
T ss_pred HHHHHHHHHHHHhCchHH-HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhccc
Confidence 467899999999999999 4555554441111 11111122222222222233333433446777777777 567
Q ss_pred ChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhhcCCCchHHHHHHHHHhhcccc
Q 000315 699 SRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPV 756 (1678)
Q Consensus 699 tpkqAKyAVr~Laa~~~~~~~~~~~~L~~~L~~~L~~~~~l~t~L~sLg~Iaq~aP~v 756 (1678)
.+..+-+|+.+|..++..+ ...+....+-|...| ....-|.++.+|.+++.+.|..
T Consensus 135 ~~~~~alale~l~~Lc~~~-vvd~~s~w~vl~~~l-~~~~rp~v~~~l~~l~~l~~~~ 190 (234)
T PF12530_consen 135 DEVAQALALEALAPLCEAE-VVDFYSAWKVLQKKL-SLDYRPLVLKSLCSLFALVPQG 190 (234)
T ss_pred cHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHhc-CCccchHHHHHHHHHHHHhccc
Confidence 7788889999999988643 233333455555555 2347788999999999987744
No 140
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=52.86 E-value=32 Score=31.14 Aligned_cols=43 Identities=19% Similarity=0.252 Sum_probs=33.0
Q ss_pred cCceEEEecCCCCceEEEEEEeecCCCC--eeEEEccCCc---ceeeec
Q 000315 1380 IGYRIKVWWPMDKQFYEGTIKSYDPIKK--KHVILYDDED---VEVLRL 1423 (1678)
Q Consensus 1380 vG~rv~V~Wp~D~~~Y~G~V~~y~~~~~--~H~v~YdDgd---~E~l~L 1423 (1678)
||.+|.+.| .+..||.++|..-....+ ...|.|..=+ .||+..
T Consensus 3 vG~~v~~~~-~~~~~y~A~I~~~r~~~~~~~YyVHY~g~nkR~DeWV~~ 50 (55)
T PF11717_consen 3 VGEKVLCKY-KDGQWYEAKILDIREKNGEPEYYVHYQGWNKRLDEWVPE 50 (55)
T ss_dssp TTEEEEEEE-TTTEEEEEEEEEEEECTTCEEEEEEETTSTGCC-EEEET
T ss_pred cCCEEEEEE-CCCcEEEEEEEEEEecCCCEEEEEEcCCCCCCceeeecH
Confidence 899999999 889999999999888654 5678886433 455443
No 141
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=52.76 E-value=15 Score=48.84 Aligned_cols=48 Identities=23% Similarity=0.464 Sum_probs=37.4
Q ss_pred CccccCceEEEecCCC----CceEEEEEEeecCCCC--------eeEEEccCCcceeeec
Q 000315 1376 IEDLIGYRIKVWWPMD----KQFYEGTIKSYDPIKK--------KHVILYDDEDVEVLRL 1423 (1678)
Q Consensus 1376 ~~~lvG~rv~V~Wp~D----~~~Y~G~V~~y~~~~~--------~H~v~YdDgd~E~l~L 1423 (1678)
-+.-.+-+|||||-+. .+|++|+|-+.-|..- ++.|+||.|+.|.+.=
T Consensus 977 rnW~~~d~crvwwrda~~e~g~WWeG~ils~~pksp~fpdSpwery~v~~~~~e~~~~sp 1036 (1113)
T KOG0644|consen 977 RNWTCRDKCRVWWRDAGEEDGAWWEGRILSVKPKSPDFPDSPWERYIVRYDNTETELHSP 1036 (1113)
T ss_pred hccccccceeEEEccCCCcCCceeeeeeeeccCCCCCCCCCcceeEEEEecCCcccccCc
Confidence 3444788999999764 7899999999776553 6899999997665544
No 142
>KOG2393 consensus Transcription initiation factor IIF, large subunit (RAP74) [Transcription]
Probab=52.04 E-value=32 Score=44.01 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=13.6
Q ss_pred cccccCCCCCCcccccCCCCCCCCC
Q 000315 1572 DEVDKMDSEEKPAEEVGSVPQDEKS 1596 (1678)
Q Consensus 1572 ~~~~~~~~~~~~~~~~~~~~~~~~~ 1596 (1678)
++++..+|++. +.|-|-.||-.+.
T Consensus 292 ~e~~E~DYdee-~addEE~Peik~d 315 (555)
T KOG2393|consen 292 NEGRELDYDEE-SADDEEAPEIKGD 315 (555)
T ss_pred ccccccccccc-cCCcccccccccc
Confidence 34455667777 5555555665553
No 143
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=51.56 E-value=1.5e+02 Score=39.06 Aligned_cols=83 Identities=14% Similarity=0.179 Sum_probs=51.0
Q ss_pred CChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCC
Q 000315 274 DQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLD 353 (1678)
Q Consensus 274 ed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D 353 (1678)
-+..+..+|-+.+.+.|.. |..--...+++.|.=+-|-++.||+..++..+.+-..+|. ..+-|.+.|...|.
T Consensus 34 g~~k~K~Laaq~I~kffk~----FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~--~v~kvaDvL~QlL~- 106 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKH----FPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE--HVSKVADVLVQLLQ- 106 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-----GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T---HHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHHHhh----ChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH--HHhHHHHHHHHHHh-
Confidence 3566777788888888864 5555556788888888888888888888888877666664 35667777777666
Q ss_pred ChhHHHHHHH
Q 000315 354 FDENVRKQVV 363 (1678)
Q Consensus 354 ~DEkVR~aaV 363 (1678)
+|+.+=+.+|
T Consensus 107 tdd~~E~~~v 116 (556)
T PF05918_consen 107 TDDPVELDAV 116 (556)
T ss_dssp ---HHHHHHH
T ss_pred cccHHHHHHH
Confidence 5554444433
No 144
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.04 E-value=9e+02 Score=33.97 Aligned_cols=300 Identities=16% Similarity=0.198 Sum_probs=145.0
Q ss_pred hhhHHHHHHHHHHHHhccc-ccccHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHh--------------hhhhHHHHH
Q 000315 164 PESVLSSMQTIMIVLLEES-EDIQEDLLVILLSALGRNKND---TARRLAMNVIEQC--------------AGKLEAGIK 225 (1678)
Q Consensus 164 ~~~V~~~m~~IL~~vI~Es-e~vp~~lLd~IL~~l~~~k~~---~a~~LA~~vi~~~--------------~dkL~~~I~ 225 (1678)
|.-++..+..++..||..- ..=.+.+++-|...+...... .|-.+-.+|+.++ .+-+-|.|.
T Consensus 102 p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il 181 (1010)
T KOG1991|consen 102 PELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDIL 181 (1010)
T ss_pred chHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 6677788888888888662 223378888777776432211 3433334444443 244566677
Q ss_pred HHHHHhhcCCCCCCCCcchHHHHHHHHHhh-----------Cchhhhhhhhhh--------cccccCCChHHHH------
Q 000315 226 QFLVSSMSGDSRPGHSHIDYHEVIYDVYRC-----------SPQILSGVVPYL--------TGELLTDQLDTRL------ 280 (1678)
Q Consensus 226 q~f~~il~~d~~~~~~~~~~h~Li~eL~~~-----------~P~lL~~ViP~L--------e~EL~sed~~~Rl------ 280 (1678)
++|+.++..++.. ......+|..+++. +|+.+.+.+..+ =.|..+.|++.|.
T Consensus 182 ~~~~~ll~~~s~~---s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK 258 (1010)
T KOG1991|consen 182 QIFNGLLSQESYQ---SVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWK 258 (1010)
T ss_pred HHHHhhccccchH---HHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhhcccccchh
Confidence 7777776654221 11233444444332 444444433221 2255556777664
Q ss_pred ---HHHHHHHHhhcCCCCCc---------hhhc-----HHHHHHHHhhhc---C---CChhHHHHHHHHhHHHHhcC---
Q 000315 281 ---KAVGLVGDLFAVPGSAN---------NEQF-----HSVFSEFLKRLT---D---RIVAVRMSVLEHVKSCLLTD--- 334 (1678)
Q Consensus 281 ---~At~llG~mfs~~~s~~---------a~~y-----~~~w~~fL~R~~---D---~s~~VR~~~ve~~~~iL~~~--- 334 (1678)
=|...|-|+|.--|+.. ++-| +-+...||+=.. - .++.|=...+.+..+++...
T Consensus 259 ~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~tw 338 (1010)
T KOG1991|consen 259 CKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQCVSHASTW 338 (1010)
T ss_pred hHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhccHHHHH
Confidence 47888899986544221 1111 222223332111 1 22222223333333322211
Q ss_pred ----CCCCChHHHHHHHH---hh---------hCCChhHHHHHHHHHHHHhhh-hhcCCCCHHHHHHHHHhhccCChhHH
Q 000315 335 ----PSRADAPQILTALC---DR---------LLDFDENVRKQVVAVICDVAC-HALNSIPVETVKLVAERLRDKSVLVK 397 (1678)
Q Consensus 335 ----p~~~~~~eii~~L~---~r---------L~D~DEkVR~aaV~ai~~la~-~~l~~V~~elL~~LaeR~RDKK~~VR 397 (1678)
|+ .+-|+..+. .| =.||+|=||+- ... ..+..-....+..+..-++-++..+=
T Consensus 339 kll~PH---l~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~-------~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l 408 (1010)
T KOG1991|consen 339 KLLKPH---LQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKK-------FDIFEDGYSPDTAALDFLTTLVSKRGKETL 408 (1010)
T ss_pred HHhhhH---HHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhc-------CchhcccCCCcHHHHHHHHHHHHhcchhhh
Confidence 21 011111110 01 15777778875 111 11222222334445555555555666
Q ss_pred HHHHHHHHHHHHHHhhhccCCCc------chhccccchHHHhhhhccCCCCchhHHHHhhccCcCCCCCH----HHHHHH
Q 000315 398 RYTMERLADIFRGCCLRNFNGSI------NQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSV----KDRVRH 467 (1678)
Q Consensus 398 ~eAm~~La~LY~~~~~~~~~~~~------~~~~~~wIPs~IL~~~Y~nd~~~~lVE~vL~e~LlP~~~~~----~~R~~~ 467 (1678)
.-.|..+..++..|-.....+.. +--.++.|.+.|+. +.+=..++|..+..+++|.-.++ ..|+--
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K----~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~ 484 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLK----KSPYKSQMEYFLVNHVFPEFQSPYGYLRARACW 484 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHcc----CCchHHHHHHHHHHHhhHhhcCchhHHHHHHHH
Confidence 66788888888876433211111 11235666655553 22112478999999999875444 344444
Q ss_pred HHHHHhcCCHHHH
Q 000315 468 WVRIFSGFDRIEM 480 (1678)
Q Consensus 468 ll~l~~~LD~~~~ 480 (1678)
.++.|+..|-+..
T Consensus 485 vl~~~~~~df~d~ 497 (1010)
T KOG1991|consen 485 VLSQFSSIDFKDP 497 (1010)
T ss_pred HHHHHHhccCCCh
Confidence 4466665554333
No 145
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=50.75 E-value=60 Score=36.52 Aligned_cols=70 Identities=14% Similarity=0.180 Sum_probs=57.8
Q ss_pred HHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHH
Q 000315 341 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1678)
Q Consensus 341 ~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~ 411 (1678)
+.-++.+.+...+++..||..|+..+.-+....+-+ |.+.+-+|.-..-|....||..|+..+..+...|
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvn-P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLVN-PKQCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCC-hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 445667777899999999999999997766544432 6777878888899999999999999999999987
No 146
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=48.94 E-value=7.8e+02 Score=32.62 Aligned_cols=333 Identities=15% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHccccCCCCCCHHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhcch-hhhcCCCcchHHHHHHHHHHHH
Q 000315 6 EQQLKEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQP-VLLKHQDKDVKLLVATCICEIT 84 (1678)
Q Consensus 6 ~~~l~~~g~kL~~~~~s~~eLlkrL~~L~~~Ls~~dQ~~~~~~~~sl~~~~~~Lv~~-~LL~HkD~~Vr~~vAcCLadIl 84 (1678)
|-.+-.||+-+.+|.. +.|.+..-++---+-.+.-++.--..+.-.-.+-.+.+. .-.-++-..+-..|..|+--++
T Consensus 384 eaavmAfGSvm~gp~~--~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~ 461 (858)
T COG5215 384 EAAVMAFGSVMHGPCE--DCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLM 461 (858)
T ss_pred HHHHHHhhhhhcCccH--HHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhh
Q ss_pred hhcCCCCCCChhHHHHHHHHHHHhcc-CCCCCCCCChhhHHHHHHHH------------HhhhhhhhcccCC--chHHHH
Q 000315 85 RITAPEAPYSDDVLKDIFQLIVGTFS-GLKDTGGPSFGRRVVILETL------------AKYRSCVVMLDLE--CDELVN 149 (1678)
Q Consensus 85 RI~APdaPytd~qLkdIF~l~v~qf~-~L~d~~~p~f~~~~~lLe~l------------A~vks~vl~~DL~--~~~Li~ 149 (1678)
|-||-..--.--|.=|+.+|. .-.+..++.|+.|.-||..| +.+-.|--+.-|= |-+-+.
T Consensus 462 -----D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~ 536 (858)
T COG5215 462 -----DCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVS 536 (858)
T ss_pred -----ccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHH
Q ss_pred HHHHHHHHhhc----------------------CCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHhcCCCcHHHHH
Q 000315 150 EMYSTFFAVAS----------------------DDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARR 207 (1678)
Q Consensus 150 ~lF~~ff~~v~----------------------~~~~~~V~~~m~~IL~~vI~Ese~vp~~lLd~IL~~l~~~k~~~a~~ 207 (1678)
++.-.|++.+. .+.+.+....+..|...-=...+.+...++...+..+...+..-++.
T Consensus 537 ~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~ 616 (858)
T COG5215 537 DILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFG 616 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhh
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHH
Q 000315 208 LAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVG 287 (1678)
Q Consensus 208 LA~~vi~~~~dkL~~~I~q~f~~il~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG 287 (1678)
=.---|..-+..|+..+.+|...++.= +...|.+..-.++.++++.+-.--.+=+.+.|..|+.+..
T Consensus 617 dV~~aIsal~~sl~e~Fe~y~~~fiPy-------------l~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms 683 (858)
T COG5215 617 DVYTAISALSTSLEERFEQYASKFIPY-------------LTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMS 683 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHH-------------HHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q ss_pred HhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHh-------cCCCCCChHHHHHHHHhhhCCChhHHHH
Q 000315 288 DLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLL-------TDPSRADAPQILTALCDRLLDFDENVRK 360 (1678)
Q Consensus 288 ~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~-------~~p~~~~~~eii~~L~~rL~D~DEkVR~ 360 (1678)
.+.-.-. -...|+++=-+-|+-|.|+.-.|-..+..+.-.|.+ ..|+.++ --..|.-.++|.
T Consensus 684 ~LvQ~ls--s~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~~---------~~~~dy~~~~~~ 752 (858)
T COG5215 684 SLVQCLS--SEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSDE---------VYVDDYRKNAVQ 752 (858)
T ss_pred HHHHHhc--ChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCc---------eeHHHHHHHHHH
Q ss_pred HHHHHHHHh
Q 000315 361 QVVAVICDV 369 (1678)
Q Consensus 361 aaV~ai~~l 369 (1678)
.++.++..+
T Consensus 753 ~v~~ayVgI 761 (858)
T COG5215 753 LVNCAYVGI 761 (858)
T ss_pred HHHHHHHHh
No 147
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.80 E-value=98 Score=37.65 Aligned_cols=162 Identities=13% Similarity=0.113 Sum_probs=115.8
Q ss_pred hHHHHHHHHHhhCchhhhh----hhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhH
Q 000315 244 DYHEVIYDVYRCSPQILSG----VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAV 319 (1678)
Q Consensus 244 ~~h~Li~eL~~~~P~lL~~----ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~V 319 (1678)
+.-..|..|-.+.|+.|.+ ||.++-.+|+.-.-.+=..|+.++++||+.-+..+.+.-..+-...|.|..+-.-=|
T Consensus 107 dgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFv 186 (334)
T KOG2933|consen 107 DGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFV 186 (334)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHH
Confidence 4456677777777776554 889999999999999999999999999998766666777888889999988877888
Q ss_pred HHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCC------CCHHHHHHHHHhhccCC
Q 000315 320 RMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS------IPVETVKLVAERLRDKS 393 (1678)
Q Consensus 320 R~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~------V~~elL~~LaeR~RDKK 393 (1678)
|...-++.-... +|-. ..-++..|.-.+.-+..+||..++..+.... ..+.. ...++...+++-++||=
T Consensus 187 reda~kAL~aMV-~~vt---p~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v-~rl~v~~~~~~~~~dl~~a~~~~~~d~L 261 (334)
T KOG2933|consen 187 REDAEKALVAMV-NHVT---PQKLLRKLIPILQHSNPRVRAKAALCFSRCV-IRLGVLPVLLQGSCDLSRAAQEQGSDKL 261 (334)
T ss_pred HHHHHHHHHHHH-hccC---hHHHHHHHHHHHhhhchhhhhhhhccccccc-eeccccchhhHhHHHHHHHHHhhhcccc
Confidence 887777665433 2322 2457888888899999999998544432111 11111 12345678999999999
Q ss_pred hhHHHHHHHHHHHHHHH
Q 000315 394 VLVKRYTMERLADIFRG 410 (1678)
Q Consensus 394 ~~VR~eAm~~La~LY~~ 410 (1678)
+.+|+.|=-.+..+..+
T Consensus 262 p~~~~~a~~~~~~~~~v 278 (334)
T KOG2933|consen 262 PELREAARFVRLELKEV 278 (334)
T ss_pred cccccchhHHHHhHHHH
Confidence 99996654444444443
No 148
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=46.99 E-value=5.8e+02 Score=30.55 Aligned_cols=63 Identities=16% Similarity=0.289 Sum_probs=43.4
Q ss_pred HHHHhhhCCChhHHHHHHHHHHHHhhhhhc-CCCCHH----HHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 000315 345 TALCDRLLDFDENVRKQVVAVICDVACHAL-NSIPVE----TVKLVAERLRDKSVLVKRYTMERLADIFR 409 (1678)
Q Consensus 345 ~~L~~rL~D~DEkVR~aaV~ai~~la~~~l-~~V~~e----lL~~LaeR~RDKK~~VR~eAm~~La~LY~ 409 (1678)
+.|...|.+.|+.+|..++..++.+...-. ..++.+ ++..+..|+.|.. .|.- |+.+|..|.+
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~-~~~~-~l~gl~~L~~ 69 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHA-CVQP-ALKGLLALVK 69 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHh-hHHH-HHHHHHHHHh
Confidence 467889999999999999999887765443 223332 3467778886653 3433 3777777774
No 149
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.95 E-value=1e+03 Score=33.45 Aligned_cols=111 Identities=14% Similarity=0.149 Sum_probs=70.2
Q ss_pred HHHHHHhhCc--hhhhh-hhhhhcccccCCChHHHHHHHHHHHHhhcCC---CCCchhhcHHHHHHHHhhhcCCChhHHH
Q 000315 248 VIYDVYRCSP--QILSG-VVPYLTGELLTDQLDTRLKAVGLVGDLFAVP---GSANNEQFHSVFSEFLKRLTDRIVAVRM 321 (1678)
Q Consensus 248 Li~eL~~~~P--~lL~~-ViP~Le~EL~sed~~~Rl~At~llG~mfs~~---~s~~a~~y~~~w~~fL~R~~D~s~~VR~ 321 (1678)
|..-|-+-+| +.+-. +.+++-.++++.---+|..|.-+++..=+.. ..++.+.+..+.++++. |.+-+||+
T Consensus 445 l~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~---d~~lPV~V 521 (1010)
T KOG1991|consen 445 LASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLN---DNELPVRV 521 (1010)
T ss_pred HHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcc---CCcCchhh
Confidence 3444445577 44333 4455555677888999999999999654221 23577788888888775 89999999
Q ss_pred HHHHHhHHHHhcCCCC-----CChHHHHHHHHhhhCCChhHHHHH
Q 000315 322 SVLEHVKSCLLTDPSR-----ADAPQILTALCDRLLDFDENVRKQ 361 (1678)
Q Consensus 322 ~~ve~~~~iL~~~p~~-----~~~~eii~~L~~rL~D~DEkVR~a 361 (1678)
+.+-+...++.+.+.. ...+.+.+.|..-.++++-.+=..
T Consensus 522 eAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~ 566 (1010)
T KOG1991|consen 522 EAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTN 566 (1010)
T ss_pred HHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHH
Confidence 9998888777765532 112344444444444444443333
No 150
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=46.45 E-value=1.4e+02 Score=36.54 Aligned_cols=107 Identities=16% Similarity=0.204 Sum_probs=71.8
Q ss_pred HHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHH
Q 000315 251 DVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSC 330 (1678)
Q Consensus 251 eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~i 330 (1678)
.|.-+.+.+|.+++|-||+| +.+.=..+.+++-.+-..-+.. .-|..+|.+.+ .+|.+|...+.++..-
T Consensus 131 ~L~p~l~~li~slLpGLede----~sE~~~~~~~ll~~l~~~v~~~--~F~~~lwl~ii-----~sp~~Rl~al~~l~~~ 199 (307)
T PF04118_consen 131 ALRPCLKGLILSLLPGLEDE----GSEFFDRTLKLLDKLKEAVGDK--YFWQCLWLCII-----TSPSRRLGALNYLLRR 199 (307)
T ss_pred HHHHHHHHHHHHhccccccC----CchHHHHHHHHHHHHHHhcChh--HHHHHHHHHHh-----cCcchhHHHHHHHHHh
Confidence 56677888899999999885 3333334445555444332222 34567888777 6899999988887654
Q ss_pred HhcCC--------------CCCChHHHHHHHHhhhCCChhHHHHHHHHHHHH
Q 000315 331 LLTDP--------------SRADAPQILTALCDRLLDFDENVRKQVVAVICD 368 (1678)
Q Consensus 331 L~~~p--------------~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~ 368 (1678)
+-... -..+..-++.+|+..|.|.+.-|++.+...+..
T Consensus 200 l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~ 251 (307)
T PF04118_consen 200 LPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLS 251 (307)
T ss_pred CCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 43211 012234577999999999999999997777744
No 151
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=45.64 E-value=1.1e+02 Score=39.89 Aligned_cols=130 Identities=17% Similarity=0.115 Sum_probs=89.5
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHH--HH----hhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHH
Q 000315 272 LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSE--FL----KRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILT 345 (1678)
Q Consensus 272 ~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~--fL----~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~ 345 (1678)
..-+..+|..++.-++.-+.. +|+.|.. || .=..|.+..||...++-...+...+|...-..+..+
T Consensus 285 ~Dv~d~IRv~c~~~L~dwi~l--------vP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~e 356 (740)
T COG5537 285 IDVDDVIRVLCSMSLRDWIGL--------VPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVE 356 (740)
T ss_pred cchhHHHHHHHHHHHHHHHhc--------chHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 345678899999999887753 3444431 11 125799999999999999988888887554455665
Q ss_pred HHHhh-----hCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChh---HHHHHHHHHHHHHHHHh
Q 000315 346 ALCDR-----LLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVL---VKRYTMERLADIFRGCC 412 (1678)
Q Consensus 346 ~L~~r-----L~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~---VR~eAm~~La~LY~~~~ 412 (1678)
-+..| ..|.|= ||..+++..|.+.. +-.++..-+-.+.-.|-|=++. +|.++...++++-....
T Consensus 357 RFk~rILE~~r~D~d~-VRi~sik~l~~lr~--lg~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK~~aevi 428 (740)
T COG5537 357 RFKDRILEFLRTDSDC-VRICSIKSLCYLRI--LGVLSSSEILIVSSCMLDIIPDSRENIVESVESICKIDAEVI 428 (740)
T ss_pred HHHHHHHHHHhhccch-hhHHHHHHHHHHHH--hcccchhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHH
Confidence 55554 578888 99999999877543 3334444444444558887776 77788887777766544
No 152
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=44.82 E-value=1.3e+02 Score=34.00 Aligned_cols=98 Identities=14% Similarity=0.149 Sum_probs=71.8
Q ss_pred ccCCChHHHHHHHHHHHHhhcCCCC-------------Cc-----------hhhcHHHHHHHHhhhcCCChhHHHHHHHH
Q 000315 271 LLTDQLDTRLKAVGLVGDLFAVPGS-------------AN-----------NEQFHSVFSEFLKRLTDRIVAVRMSVLEH 326 (1678)
Q Consensus 271 L~sed~~~Rl~At~llG~mfs~~~s-------------~~-----------a~~y~~~w~~fL~R~~D~s~~VR~~~ve~ 326 (1678)
|...+..+|..|..++.-|+-+... +| .+-|..+.... -...++.+=.+++++
T Consensus 49 l~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L---~~E~~~~~l~q~lK~ 125 (182)
T PF13251_consen 49 LKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLAL---QAEKSPPVLTQLLKC 125 (182)
T ss_pred HcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHH---hcccccHHHHHHHHH
Confidence 4567899999999999999977521 11 23344444333 234567788899999
Q ss_pred hHHHHhcCCCC----CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhh
Q 000315 327 VKSCLLTDPSR----ADAPQILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1678)
Q Consensus 327 ~~~iL~~~p~~----~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~ 371 (1678)
+...+.+-|+. .....++..+..++...|..||.++.-+++.+..
T Consensus 126 la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 126 LAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 98888887863 4456777889999999999999998888876643
No 153
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=44.76 E-value=8e+02 Score=31.58 Aligned_cols=64 Identities=16% Similarity=0.095 Sum_probs=39.5
Q ss_pred CCCcchHHHHHHHHHHHHhhcCCC-CCCChhHH---HHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhh
Q 000315 67 HQDKDVKLLVATCICEITRITAPE-APYSDDVL---KDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYR 134 (1678)
Q Consensus 67 HkD~~Vr~~vAcCLadIlRI~APd-aPytd~qL---kdIF~l~v~qf~~L~d~~~p~f~~~~~lLe~lA~vk 134 (1678)
-...++..|+-.-|.|+++- .|. +++--+.. .++|.-|+..|. ..+.+-....+++|..+....
T Consensus 65 ~~~~d~vqyvL~Li~dll~~-~~~~~~~f~~~~~~~~~~~~~fl~lL~---~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 65 IDKDDTVRYVLTLIDDMLQE-DDTRVKLFHDDALLKKKTWEPFFNLLN---RQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred cCcHHHHHHHHHHHHHHHHh-chHHHHHHHHHhhccccchHHHHHHHc---CCchhHHHHHHHHHHHHHhcC
Confidence 45677999999999999997 222 11111111 456666766543 345555666777777776543
No 154
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=44.24 E-value=5.7e+02 Score=35.24 Aligned_cols=117 Identities=20% Similarity=0.267 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhhcCCCCchhhHHhHHHHHHHh-cchhhhcCCCcchHHHHHHHHHHHHhhcCCCCC-----CChhHHHHH
Q 000315 28 KLLKQAATCLSELNQSPPASILEAMQPFLNAI-VQPVLLKHQDKDVKLLVATCICEITRITAPEAP-----YSDDVLKDI 101 (1678)
Q Consensus 28 krL~~L~~~Ls~~dQ~~~~~~~~sl~~~~~~L-v~~~LL~HkD~~Vr~~vAcCLadIlRI~APdaP-----ytd~qLkdI 101 (1678)
..|-.++++=..+-.+ ++..++.+| +=..||.|.|+.+=-+|+.|++-|.-=++|++- +..+-++.|
T Consensus 313 ~AlaiaaN~Cksi~sd-------~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~ 385 (1051)
T KOG0168|consen 313 VALAIAANCCKSIRSD-------EFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNI 385 (1051)
T ss_pred HHHHHHHHHHhcCCCc-------cchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHH
Confidence 3344444444444333 456666666 456899999999999999998877766665421 112233444
Q ss_pred HHHHHHhccCCCCC--CCCChhhHHHHHHHHHh--hhhhhhcccCCchHHHHHHHHHHH
Q 000315 102 FQLIVGTFSGLKDT--GGPSFGRRVVILETLAK--YRSCVVMLDLECDELVNEMYSTFF 156 (1678)
Q Consensus 102 F~l~v~qf~~L~d~--~~p~f~~~~~lLe~lA~--vks~vl~~DL~~~~Li~~lF~~ff 156 (1678)
=+|+.-+ ++ +++-|.--+-+|-.++. .-.++.+..++=-+.+..+|.+.-
T Consensus 386 ~qLlsvt-----~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s 439 (1051)
T KOG0168|consen 386 QQLLSVT-----PTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYS 439 (1051)
T ss_pred HHHHhcC-----cccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccC
Confidence 4444333 32 45555555555555542 222333333332345555555543
No 155
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=43.37 E-value=14 Score=49.23 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=17.1
Q ss_pred ChhhHhHhHHHHHHHHHHhhhc
Q 000315 843 SSVDKAHLRLASAKAVLRLSRQ 864 (1678)
Q Consensus 843 p~~~ksrLRLaAa~~lLKLAr~ 864 (1678)
|....--+|-.|.+.|+-|||.
T Consensus 753 P~t~aD~IRalAc~~L~GLaR~ 774 (1516)
T KOG1832|consen 753 PPTTADCIRALACRVLLGLARD 774 (1516)
T ss_pred CCCcHHHHHHHHHHHHhccccC
Confidence 5566677888888888888875
No 156
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=42.50 E-value=6.2e+02 Score=29.59 Aligned_cols=70 Identities=23% Similarity=0.255 Sum_probs=48.5
Q ss_pred HHHHHhhCchhhhhhhhhhcccc-cCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHH
Q 000315 249 IYDVYRCSPQILSGVVPYLTGEL-LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 325 (1678)
Q Consensus 249 i~eL~~~~P~lL~~ViP~Le~EL-~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve 325 (1678)
+..+-+..|+-=..+++.|..=| ..+++..+..|++.+.-+.... +-.+..+|+...+++ +-+-|-.+++
T Consensus 108 ~~~ic~~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~----vvd~~s~w~vl~~~l---~~~~rp~v~~ 178 (234)
T PF12530_consen 108 IRDICCSRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE----VVDFYSAWKVLQKKL---SLDYRPLVLK 178 (234)
T ss_pred HHHHHHhChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh----hccHHHHHHHHHHhc---CCccchHHHH
Confidence 44455555554444556666666 7899999999999999999443 456678999999888 3444444444
No 157
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=41.46 E-value=1.1e+02 Score=40.86 Aligned_cols=88 Identities=18% Similarity=0.202 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHH-HHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChh
Q 000315 278 TRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMS-VLEHVKSCLLTDPSRADAPQILTALCDRLLDFDE 356 (1678)
Q Consensus 278 ~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~-~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DE 356 (1678)
.|=+|+-+---||+..+ ...++.++.+ .|++|-+|.. |...+-...-+. ...-|-.-|.--..|.++
T Consensus 502 ~RGl~vGiaL~~ygrqe-----~Ad~lI~el~---~dkdpilR~~Gm~t~alAy~GTg----nnkair~lLh~aVsD~nD 569 (929)
T KOG2062|consen 502 IRGLAVGIALVVYGRQE-----DADPLIKELL---RDKDPILRYGGMYTLALAYVGTG----NNKAIRRLLHVAVSDVND 569 (929)
T ss_pred HHHHHHhHHHHHhhhhh-----hhHHHHHHHh---cCCchhhhhhhHHHHHHHHhccC----chhhHHHhhcccccccch
Confidence 46666665555665543 2233444433 4778888876 333332222221 112344445555778888
Q ss_pred HHHHHHHHHHHHhhhhhcCCC
Q 000315 357 NVRKQVVAVICDVACHALNSI 377 (1678)
Q Consensus 357 kVR~aaV~ai~~la~~~l~~V 377 (1678)
.||++||.+|+-+.+..++.+
T Consensus 570 DVrRaAVialGFVl~~dp~~~ 590 (929)
T KOG2062|consen 570 DVRRAAVIALGFVLFRDPEQL 590 (929)
T ss_pred HHHHHHHHHheeeEecChhhc
Confidence 888888888877766665544
No 158
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=41.04 E-value=1.9e+02 Score=35.54 Aligned_cols=137 Identities=20% Similarity=0.297 Sum_probs=0.0
Q ss_pred hhhhcccccCCChHHHHHHHHHHHHhhcCCCCC-----chhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcC-CCC
Q 000315 264 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA-----NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD-PSR 337 (1678)
Q Consensus 264 iP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~-----~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~-p~~ 337 (1678)
+|+|...|-++|.+.-+.||--+-+++|...+. +..---+-|.+|+. ++--.|+++-..-.++| .++
T Consensus 73 lp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~-------~~q~~mlqfEAaWalTNiaSG 145 (526)
T COG5064 73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMD-------EIQRDMLQFEAAWALTNIASG 145 (526)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHH-------hcchhHHHHHHHHHHhhhccC
Q ss_pred CChH-------HHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcC---------------------CCCHHHHH----HH
Q 000315 338 ADAP-------QILTALCDRLLDFDENVRKQVVAVICDVACHALN---------------------SIPVETVK----LV 385 (1678)
Q Consensus 338 ~~~~-------eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~---------------------~V~~elL~----~L 385 (1678)
.-.+ .-+..|...|.++...||-++|=+++.+|-.+.. .+..++++ +|
T Consensus 146 tt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtL 225 (526)
T COG5064 146 TTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTL 225 (526)
T ss_pred cccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHH
Q ss_pred HHhhccCCh----hHHHHHHHHHHHH
Q 000315 386 AERLRDKSV----LVKRYTMERLADI 407 (1678)
Q Consensus 386 aeR~RDKK~----~VR~eAm~~La~L 407 (1678)
...+|-|++ .+=..|+..|++|
T Consensus 226 SNlcRGknP~P~w~~isqalpiL~KL 251 (526)
T COG5064 226 SNLCRGKNPPPDWSNISQALPILAKL 251 (526)
T ss_pred HHhhCCCCCCCchHHHHHHHHHHHHH
No 159
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=40.58 E-value=4.7e+02 Score=36.24 Aligned_cols=194 Identities=18% Similarity=0.212 Sum_probs=117.5
Q ss_pred HHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhcccCCc--hHHHHHHHHHHHHhhcCCChhhHHHHHHHHH
Q 000315 98 LKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLEC--DELVNEMYSTFFAVASDDHPESVLSSMQTIM 175 (1678)
Q Consensus 98 LkdIF~l~v~qf~~L~d~~~p~f~~~~~lLe~lA~vks~vl~~DL~~--~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL 175 (1678)
|..-|.+...-|.+-+|...|.|.-.-+.|+- -|+|+-+.. ..+... + -+-+++......+|=
T Consensus 1036 L~~~~~f~~~vFs~sgd~g~~~f~~s~r~l~~------Sv~~~~i~~~~~l~~LR----~-----~n~~~~~~~~vSdik 1100 (1525)
T COG5219 1036 LGENHHFVEKVFSLSGDLGLPSFRCSDRKLEQ------SVLLERIGPRAILYVLR----K-----HNVPPQFVASVSDIK 1100 (1525)
T ss_pred HhhhhhhhhhheecccccCccHHHHHHHHHHh------hHhhccCCchHHHHHHH----H-----ccCcHHHHHhhccch
Confidence 55556666666777777777766655555543 122333221 111111 1 122455555556666
Q ss_pred HHHhcccccccHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHhhhhhHHHHHHHHHH---hhcCCCCCCCCcchHHHH
Q 000315 176 IVLLEESEDIQEDLLVILLSALGRNKND----TARRLAMNVIEQCAGKLEAGIKQFLVS---SMSGDSRPGHSHIDYHEV 248 (1678)
Q Consensus 176 ~~vI~Ese~vp~~lLd~IL~~l~~~k~~----~a~~LA~~vi~~~~dkL~~~I~q~f~~---il~~d~~~~~~~~~~h~L 248 (1678)
-.|.+-.+++..-+|..++-++...++. +-+++-..++..|.-+.-+. ||+.- +...+ ++
T Consensus 1101 d~IvEsndsmn~lLlkflFthfs~lrN~~~sr~~~q~l~k~~~~~p~k~ves--Qy~e~fp~~~N~~-----------d~ 1167 (1525)
T COG5219 1101 DCIVESNDSMNYLLLKFLFTHFSYLRNEALSRAVSQLLLKCRKGFPIKFVES--QYFEGFPEFPNAD-----------DE 1167 (1525)
T ss_pred hhhhhcchHHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHhCCCchhhhh--hhhhcCcccCCch-----------hH
Confidence 6666666789999999888877654432 34555555555555443333 55432 11111 11
Q ss_pred HHHHHhhCchhhhhhhhhhcccccCCCh--HHHH-----------HHHHHHHHhhcCCCCCc------------hhhcHH
Q 000315 249 IYDVYRCSPQILSGVVPYLTGELLTDQL--DTRL-----------KAVGLVGDLFAVPGSAN------------NEQFHS 303 (1678)
Q Consensus 249 i~eL~~~~P~lL~~ViP~Le~EL~sed~--~~Rl-----------~At~llG~mfs~~~s~~------------a~~y~~ 303 (1678)
++++..|..|-..|++|+. .+|+ +..+.|.+||--||-.+ ...|=.
T Consensus 1168 ---------qmesv~mk~LreKls~d~~El~l~~~~~s~y~~d~Sl~~~~v~~~i~~Pgd~l~~v~k~ey~e~~~~vYL~ 1238 (1525)
T COG5219 1168 ---------QMESVCMKFLREKLSADDNELLLMLLAKSNYRNDRSLDMKGVVRMIERPGDHLLSVKKEEYRERHTIVYLP 1238 (1525)
T ss_pred ---------HHHHHHHHHHHHhhhhhhHHHHHHHHHHhCCCcccccCHhHHHHHhccccchhhhcCHHHHHHHhhHHHHH
Confidence 5566667777777777665 4444 44678999999887433 124778
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHhH
Q 000315 304 VFSEFLKRLTDRIVAVRMSVLEHVK 328 (1678)
Q Consensus 304 ~w~~fL~R~~D~s~~VR~~~ve~~~ 328 (1678)
+|+--++-|.|.+-.+|..++++..
T Consensus 1239 ~w~lI~~hf~dT~yNm~~siI~qL~ 1263 (1525)
T COG5219 1239 LWRLIYGHFADTVYNMYSSIISQLD 1263 (1525)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 9999999999999999999998865
No 160
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=40.02 E-value=3.1e+02 Score=34.05 Aligned_cols=96 Identities=16% Similarity=0.145 Sum_probs=63.8
Q ss_pred cccCCChHHHHHHHHHHHHhhcCCC-C--Cchh--hcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHH-
Q 000315 270 ELLTDQLDTRLKAVGLVGDLFAVPG-S--ANNE--QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQI- 343 (1678)
Q Consensus 270 EL~sed~~~Rl~At~llG~mfs~~~-s--~~a~--~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~ei- 343 (1678)
.|.+.+..+|..|+.+||.++.... + .+.. .-+.+...+- .|.+..+|...+=+....|.+++.. ..+.
T Consensus 132 ~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls---~~~~~~~r~kaL~AissLIRn~~~g--~~~fl 206 (342)
T KOG2160|consen 132 YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILS---SDDPNTVRTKALFAISSLIRNNKPG--QDEFL 206 (342)
T ss_pred HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHc---cCCCchHHHHHHHHHHHHHhcCcHH--HHHHH
Confidence 6778999999999999999998642 1 1111 1234444443 6778889999999998888888743 1222
Q ss_pred ----HHHHHhhhCCChhHHHHH--HHHHHHHhh
Q 000315 344 ----LTALCDRLLDFDENVRKQ--VVAVICDVA 370 (1678)
Q Consensus 344 ----i~~L~~rL~D~DEkVR~a--aV~ai~~la 370 (1678)
+..|.+.|...+..||.. |+--|..+.
T Consensus 207 ~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll 239 (342)
T KOG2160|consen 207 KLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLL 239 (342)
T ss_pred hcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence 357888888865556555 344444433
No 161
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=39.53 E-value=6.8e+02 Score=30.26 Aligned_cols=147 Identities=24% Similarity=0.283 Sum_probs=80.2
Q ss_pred HHHHHHHHHhhCchhhhhhhhhhccccc--CCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhc-CCChhHHH
Q 000315 245 YHEVIYDVYRCSPQILSGVVPYLTGELL--TDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLT-DRIVAVRM 321 (1678)
Q Consensus 245 ~h~Li~eL~~~~P~lL~~ViP~Le~EL~--sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~-D~s~~VR~ 321 (1678)
.|++.|-|-+-.- ...+|.|..-|. +.++-+|..|-+.||.++ .+. -..+|.|.. |....||-
T Consensus 53 khe~ay~LgQ~~~---~~Av~~l~~vl~desq~pmvRhEAaealga~~-~~~----------~~~~l~k~~~dp~~~v~E 118 (289)
T KOG0567|consen 53 KHELAYVLGQMQD---EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DPE----------SLEILTKYIKDPCKEVRE 118 (289)
T ss_pred ccchhhhhhhhcc---chhhHHHHHHhcccccchHHHHHHHHHHHhhc-chh----------hHHHHHHHhcCCccccch
Confidence 4666665543321 122333333333 457899999999999888 543 235555555 66666665
Q ss_pred HHHHHhHHH---------Hhc------CCCCC-Ch--------------------------------HHHHHHHHhhhCC
Q 000315 322 SVLEHVKSC---------LLT------DPSRA-DA--------------------------------PQILTALCDRLLD 353 (1678)
Q Consensus 322 ~~ve~~~~i---------L~~------~p~~~-~~--------------------------------~eii~~L~~rL~D 353 (1678)
.|-.++.++ ..+ +|... .. .+-+.+|.+-|.|
T Consensus 119 Tc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~ 198 (289)
T KOG0567|consen 119 TCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLAD 198 (289)
T ss_pred HHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhccc
Confidence 433333321 111 12111 00 1223344444444
Q ss_pred ChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCC--hhHHHHHHHHHHHHHHHHh
Q 000315 354 FDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKS--VLVKRYTMERLADIFRGCC 412 (1678)
Q Consensus 354 ~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK--~~VR~eAm~~La~LY~~~~ 412 (1678)
.-.-.|..|--+++++- +..-+-.|.+.++|.+ +=||.+|.+.||.+=...|
T Consensus 199 ~SalfrhEvAfVfGQl~-------s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~~ 252 (289)
T KOG0567|consen 199 DSALFRHEVAFVFGQLQ-------SPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADEDC 252 (289)
T ss_pred chHHHHHHHHHHHhhcc-------chhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHHH
Confidence 44555555444444321 3334556778888887 6799999999998876654
No 162
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=39.30 E-value=17 Score=48.35 Aligned_cols=22 Identities=32% Similarity=0.241 Sum_probs=15.7
Q ss_pred hhcccccccCccccccCCCCCC
Q 000315 1182 REINLDNLGVLNKFESSNGHKH 1203 (1678)
Q Consensus 1182 ~~~~~~~~~~~~~~~~~~~~~~ 1203 (1678)
-||-+=|+-.-..-++-|+|-+
T Consensus 1123 Geik~~nv~sG~~e~s~ncH~S 1144 (1516)
T KOG1832|consen 1123 GEIKIFNVSSGSMEESVNCHQS 1144 (1516)
T ss_pred ceEEEEEccCcccccccccccc
Confidence 4666667777777788899943
No 163
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.03 E-value=1.2e+02 Score=40.47 Aligned_cols=120 Identities=22% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHhh------CchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhH
Q 000315 246 HEVIYDVYRC------SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAV 319 (1678)
Q Consensus 246 h~Li~eL~~~------~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~V 319 (1678)
|.+++|.-.. .|+++...+-+|-.-|.+-+..+|-+|.+.+.+|.+...+.=+..|. .=.-+..=..+++++|
T Consensus 307 naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h-~d~Ii~sLkterDvSi 385 (938)
T KOG1077|consen 307 NAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH-QDTIINSLKTERDVSI 385 (938)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH-HHHHHHHhccccchHH
Q ss_pred HHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhh
Q 000315 320 RMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVA 370 (1678)
Q Consensus 320 R~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la 370 (1678)
|...|+. |-.-.++.-+.+|+..|..-|.-.|--+|-+.|--+.=+|
T Consensus 386 rrravDL----LY~mcD~~Nak~IV~elLqYL~tAd~sireeivlKvAILa 432 (938)
T KOG1077|consen 386 RRRAVDL----LYAMCDVSNAKQIVAELLQYLETADYSIREEIVLKVAILA 432 (938)
T ss_pred HHHHHHH----HHHHhchhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
No 164
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=38.96 E-value=6e+02 Score=32.86 Aligned_cols=162 Identities=14% Similarity=0.166 Sum_probs=94.8
Q ss_pred hhHHHHHHHHHHHHhcccccccH----HHHHHHHHHhcCCCcH----HHHHHHHHHHHHhhhhhHHHH----HHHHHHhh
Q 000315 165 ESVLSSMQTIMIVLLEESEDIQE----DLLVILLSALGRNKND----TARRLAMNVIEQCAGKLEAGI----KQFLVSSM 232 (1678)
Q Consensus 165 ~~V~~~m~~IL~~vI~Ese~vp~----~lLd~IL~~l~~~k~~----~a~~LA~~vi~~~~dkL~~~I----~q~f~~il 232 (1678)
..-...|..|+.-+-+.+.+|.. ++|..+|.-+...+.. -|.++-..+|.+.+++|..+. +.++-..-
T Consensus 302 ~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ 381 (516)
T KOG2956|consen 302 SERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAK 381 (516)
T ss_pred hHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHh
Confidence 34566788888888888889988 4555555566553332 666777777777777776654 33332211
Q ss_pred cCCCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCC-CchhhcHHHHHHHHhh
Q 000315 233 SGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGS-ANNEQFHSVFSEFLKR 311 (1678)
Q Consensus 233 ~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s-~~a~~y~~~w~~fL~R 311 (1678)
+..........-..+.-|..+.|..=..||-.+ +..+|.+.=.++++.+.+||..-.. .+...-|++-=+++.-
T Consensus 382 --ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~---Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqa 456 (516)
T KOG2956|consen 382 --DSQDEVMRVAEEDCLTTLASHLPLQCIVNISPL---ILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQA 456 (516)
T ss_pred --CCchhHHHHHHHHHHHHHHhhCchhHHHHHhhH---HhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHH
Confidence 100000111223445555566665433333221 3347777878899999999976432 2334445555566666
Q ss_pred hcCCChhHHHHHHHHhHHHH
Q 000315 312 LTDRIVAVRMSVLEHVKSCL 331 (1678)
Q Consensus 312 ~~D~s~~VR~~~ve~~~~iL 331 (1678)
+.-.+..||-.+|=|...++
T Consensus 457 y~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 457 YDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred hcCchHHhhhhHHHhHHHHH
Confidence 77777778877776665544
No 165
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=38.42 E-value=1.3e+02 Score=35.89 Aligned_cols=135 Identities=14% Similarity=0.150 Sum_probs=74.0
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhC
Q 000315 273 TDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLL 352 (1678)
Q Consensus 273 sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~ 352 (1678)
++|+.++..|+-++|..-+.+...-.-..-..-.-..+-..|.++.||...+.+..++=.+......++.-+..+++...
T Consensus 24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~ 103 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETV 103 (254)
T ss_pred CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHh
Confidence 67899999999999986554321111111112233566778899999987777765422211111122233445555433
Q ss_pred C--ChhHHHHHHHHHHHHhhhhh-cCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000315 353 D--FDENVRKQVVAVICDVACHA-LNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1678)
Q Consensus 353 D--~DEkVR~aaV~ai~~la~~~-l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~L 407 (1678)
. .|..|..++...++.++... .+.+=...+..+...+.-=...+|..++..|..|
T Consensus 104 s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 104 SSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred cCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 3 36778888888888876432 1111111222222223333456777777766655
No 166
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.54 E-value=6.6e+02 Score=32.71 Aligned_cols=251 Identities=13% Similarity=0.076 Sum_probs=0.0
Q ss_pred cccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcC--CCCCChHHHHHHH
Q 000315 270 ELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD--PSRADAPQILTAL 347 (1678)
Q Consensus 270 EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~--p~~~~~~eii~~L 347 (1678)
++.+++.--|..+|++=..|--..+.++.. +-..++.-..--.+.=|+..+-++..+.... +++..-..+.-.+
T Consensus 188 ~qls~~~~h~~g~trlqr~m~~~~~~~~~~----il~q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~l 263 (533)
T KOG2032|consen 188 SQLSDNDIHRVGLTRLQRFMACVQDLEMGK----ILAQLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSL 263 (533)
T ss_pred hhcccCcccHHHHHHHHHHHHhhCCccHHH----HHhhcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHH
Q ss_pred HhhhCCChhHHHHHHHHHHHHhhhhhcCCC----CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCcchh
Q 000315 348 CDRLLDFDENVRKQVVAVICDVACHALNSI----PVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQN 423 (1678)
Q Consensus 348 ~~rL~D~DEkVR~aaV~ai~~la~~~l~~V----~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~~~~~~~ 423 (1678)
..|..||+.++|..|+..++.++...++.+ +.-+...+....-|=+.+|-.+||.+|..+-... .+.....
T Consensus 264 a~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~-----~~~~l~~ 338 (533)
T KOG2032|consen 264 ANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA-----SNDDLES 338 (533)
T ss_pred HHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh-----hhcchhh
Q ss_pred ccccchHHHhhhhccCCCCchhHHHHhhccCcCCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--
Q 000315 424 EFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGF---------SVKDRVRHWVRIFSGFDRIEMKALEKILEQKQR-- 492 (1678)
Q Consensus 424 ~~~wIPs~IL~~~Y~nd~~~~lVE~vL~e~LlP~~~---------~~~~R~~~ll~l~~~LD~~~~kal~~il~~k~~-- 492 (1678)
-|--|--++-..+-..+..-..--.++|+.|.|+.- .+..|-..++-...+..+.--+|+...+..-.-
T Consensus 339 ~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l 418 (533)
T KOG2032|consen 339 YLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNL 418 (533)
T ss_pred hchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchh
Q ss_pred HHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCC
Q 000315 493 LQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAE 532 (1678)
Q Consensus 493 l~~~~~~~l~l~~~~~~~d~~ei~~kl~~~i~~Ls~~fPD 532 (1678)
.+.+...|++-.. +.+.+-++.=++..+-.+...+||
T Consensus 419 ~rke~~~~~q~~l---d~~~~~~q~Fyn~~c~~L~~i~~d 455 (533)
T KOG2032|consen 419 VRKELYHLFQESL---DTDMARFQAFYNQWCIQLNHIHPD 455 (533)
T ss_pred HHHHHHHHHhhhh---HHhHHHHHHHHHHHHHHHhhhCHH
No 167
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=36.54 E-value=1.6e+02 Score=36.07 Aligned_cols=87 Identities=18% Similarity=0.221 Sum_probs=66.7
Q ss_pred HHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhh-CCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHH
Q 000315 319 VRMSVLEHVKSCLLTDPSRADAPQILTALCDRL-LDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVK 397 (1678)
Q Consensus 319 VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL-~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR 397 (1678)
=|+.+++....+ |.......|+++|...+ -+..|.+..+.+.+++.-....-..+|..++..+..=+.|||+.||
T Consensus 3 ~r~~~~~~L~~l----~~~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR 78 (339)
T PF12074_consen 3 QRVLHASMLSSL----PSSSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVR 78 (339)
T ss_pred HHHHHHHHHHhC----CCcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHH
Confidence 355555554432 22235678888888876 4599999999999997743333378899999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 000315 398 RYTMERLADIFR 409 (1678)
Q Consensus 398 ~eAm~~La~LY~ 409 (1678)
+.-+..++.++.
T Consensus 79 ~~w~~~~~~~~~ 90 (339)
T PF12074_consen 79 RAWLLCLGEALW 90 (339)
T ss_pred HHHHHHHHHHHh
Confidence 999999999877
No 168
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.20 E-value=4.8e+02 Score=32.61 Aligned_cols=146 Identities=15% Similarity=0.174 Sum_probs=106.7
Q ss_pred hhhhhhhcccccCCChHHHHHHHHHHHHhhcCCC--CCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCC
Q 000315 261 SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG--SANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRA 338 (1678)
Q Consensus 261 ~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~--s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~ 338 (1678)
.+-+|.|-.-|.+.|.++|--+|..+|.+--... --++++-|-+-.+...=+.|-++.|.++..-+... |.+.. .
T Consensus 207 aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrn-lasdt--~ 283 (550)
T KOG4224|consen 207 AGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRN-LASDT--E 283 (550)
T ss_pred cCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhh-hcccc--h
Confidence 3578888888999999999999999997654421 23678888899999999999999998877666643 33322 1
Q ss_pred ChHHHH-----HHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCH---HHHHHHHHhhccCChh-HHHHHHHHHHHHHH
Q 000315 339 DAPQIL-----TALCDRLLDFDENVRKQVVAVICDVACHALNSIPV---ETVKLVAERLRDKSVL-VKRYTMERLADIFR 409 (1678)
Q Consensus 339 ~~~eii-----~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~---elL~~LaeR~RDKK~~-VR~eAm~~La~LY~ 409 (1678)
-..+|+ ..+-+.|.|+--..=++.|..|..++.+.++.++. -+|+-|...+|=+.-. +...|...|-+|-.
T Consensus 284 Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAa 363 (550)
T KOG4224|consen 284 YQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAA 363 (550)
T ss_pred hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhh
Confidence 223444 46777788888888889999998899888876543 4666666666665544 88888777766644
No 169
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=36.10 E-value=74 Score=43.95 Aligned_cols=16 Identities=19% Similarity=-0.016 Sum_probs=10.2
Q ss_pred CchhhhHHHHhHccCC
Q 000315 959 YPEYIIPYLVHTFAHH 974 (1678)
Q Consensus 959 ~pEy~LprLIHlLAHH 974 (1678)
.-||+|+-+.--=.|.
T Consensus 1213 K~e~iF~~fn~de~hN 1228 (3015)
T KOG0943|consen 1213 KEEDIFMGFNCDEGHN 1228 (3015)
T ss_pred hhhhhccccccCCCCC
Confidence 3477777666555666
No 170
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=35.93 E-value=3e+02 Score=36.87 Aligned_cols=148 Identities=15% Similarity=0.132 Sum_probs=96.7
Q ss_pred CchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCC
Q 000315 256 SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDP 335 (1678)
Q Consensus 256 ~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p 335 (1678)
.++.-..++|.|-.-+.+.|..+|+.-.+-+-+.+..-. =-.....+|-.+..=|+|.++.+|..-|++...+.-.-.
T Consensus 324 ~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt--~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~ 401 (690)
T KOG1243|consen 324 EEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLT--KQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS 401 (690)
T ss_pred ccccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcC--HHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc
Confidence 444667788999888999999999887666655443211 112445788899999999999999999988865443221
Q ss_pred CCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHh-hccCChhHHHHHHHHHH
Q 000315 336 SRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAER-LRDKSVLVKRYTMERLA 405 (1678)
Q Consensus 336 ~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR-~RDKK~~VR~eAm~~La 405 (1678)
.+..-.|++++|.+.-.|.+-.+|.-++..++.++...-..+-..+|-.---| +||-=..=|..++..|+
T Consensus 402 ~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~ 472 (690)
T KOG1243|consen 402 KRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALA 472 (690)
T ss_pred hhhhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHh
Confidence 22344689999998888999999998877777766542111111122111223 55555555555554443
No 171
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=35.73 E-value=2.4e+02 Score=34.56 Aligned_cols=123 Identities=20% Similarity=0.254 Sum_probs=82.9
Q ss_pred HHHHHHHHhhcCC-CCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCCh--------HHHHHHHHhhh
Q 000315 281 KAVGLVGDLFAVP-GSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADA--------PQILTALCDRL 351 (1678)
Q Consensus 281 ~At~llG~mfs~~-~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~--------~eii~~L~~rL 351 (1678)
+.|..|-|+|... |..++..|....+.=|. .| +..|.+..++.++-||.+. +.... .+|.+.+..++
T Consensus 62 lcVscLERLfkakegahlapnlmpdLQrGLi--ad-dasVKiLackqigcilEdc-DtnaVseillvvNaeilklildcI 137 (524)
T KOG4413|consen 62 LCVSCLERLFKAKEGAHLAPNLMPDLQRGLI--AD-DASVKILACKQIGCILEDC-DTNAVSEILLVVNAEILKLILDCI 137 (524)
T ss_pred hHHHHHHHHHhhccchhhchhhhHHHHhccc--CC-cchhhhhhHhhhhHHHhcC-chhhHHHHHHHhhhhHHHHHHHHH
Confidence 3788899999765 56677777666664333 33 6788888888887766543 32222 25667888899
Q ss_pred CCChhHHHHHHHHHHHHhhhh--hcCCC-CHH-----HHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000315 352 LDFDENVRKQVVAVICDVACH--ALNSI-PVE-----TVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1678)
Q Consensus 352 ~D~DEkVR~aaV~ai~~la~~--~l~~V-~~e-----lL~~LaeR~RDKK~~VR~eAm~~La~LY~~ 410 (1678)
.-.|+.|-.+|++.|..++.+ .++.+ +.+ -+..|+.|+-| -+|-...+.+-++|..
T Consensus 138 ggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcnd---iaRvRVleLIieifSi 201 (524)
T KOG4413|consen 138 GGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCND---IARVRVLELIIEIFSI 201 (524)
T ss_pred cCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhh---HHHHHHHHHHHHHHhc
Confidence 999999999999999998853 23322 222 34566777744 4565556666666654
No 172
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.25 E-value=1.1e+02 Score=40.29 Aligned_cols=53 Identities=11% Similarity=0.025 Sum_probs=45.4
Q ss_pred HHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhh
Q 000315 320 RMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACH 372 (1678)
Q Consensus 320 R~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~ 372 (1678)
=..+++||-.++...|+......|+.++-..+.|+..-||...|.+|..+...
T Consensus 302 ~~vav~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~ 354 (704)
T KOG2153|consen 302 AQVAVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFEN 354 (704)
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcC
Confidence 34688899898888888777789999999999999999999999999877653
No 173
>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification]
Probab=34.25 E-value=40 Score=39.08 Aligned_cols=38 Identities=18% Similarity=0.373 Sum_probs=31.9
Q ss_pred ccccCceEEEecCCCCceEEEEEEeecCCCCeeEEEcc
Q 000315 1377 EDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYD 1414 (1678)
Q Consensus 1377 ~~lvG~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~Yd 1414 (1678)
..=||.+|-+-|++|..||.++|....+.++.-.|.++
T Consensus 90 ~w~vg~K~~A~~~ddg~~y~AtIe~ita~~~~~ai~f~ 127 (262)
T KOG3026|consen 90 GWKVGDKVQAVFSDDGQIYDATIEHITAMEGTVAIIFA 127 (262)
T ss_pred ccccCCEEEEeecCCCceEEeehhhccCCCCceeEEEe
Confidence 34599999999999999999999999997666665553
No 174
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=34.18 E-value=70 Score=41.29 Aligned_cols=63 Identities=17% Similarity=0.204 Sum_probs=39.1
Q ss_pred hcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCC
Q 000315 312 LTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI 377 (1678)
Q Consensus 312 ~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V 377 (1678)
.+|+++-.|..=+-...-...- .. ...-+-.-|.--..|.++.||+|||-+++-+.|.....+
T Consensus 525 l~d~ds~lRy~G~fs~alAy~G-Tg--n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~~l 587 (926)
T COG5116 525 LYDKDSILRYNGVFSLALAYVG-TG--NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRDLL 587 (926)
T ss_pred hcCchHHhhhccHHHHHHHHhc-CC--cchhHhhhheeecccCchHHHHHHHHheeeeEecCcchh
Confidence 3688888887644333221211 01 112233344445899999999999999988877776654
No 175
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=33.65 E-value=9.9e+02 Score=33.24 Aligned_cols=164 Identities=16% Similarity=0.236 Sum_probs=96.5
Q ss_pred HccccCCCCCCHHHHHHHHHHHHHHHhhcCCCCch--------hhHHhHHHHHHHhcchhhhcCCCcchHHHHHHHHHHH
Q 000315 12 VGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPA--------SILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEI 83 (1678)
Q Consensus 12 ~g~kL~~~~~s~~eLlkrL~~L~~~Ls~~dQ~~~~--------~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadI 83 (1678)
+++++.++-+++.+.-+++= ... .|.++. .+=++..++...|.+.. =.-.|.++....|.|+++-
T Consensus 44 V~~~IisldL~v~~Vy~~vW-----~~~-~~~~pM~v~YR~~Gl~geAtE~~v~~l~~~~-~~~~d~e~~~~~~~v~~~~ 116 (802)
T PF13764_consen 44 VNNKIISLDLPVRDVYEKVW-----KPN-NQNPPMRVVYRMRGLDGEATEEFVESLEDDS-EEEEDPEQEFKIASVLAEC 116 (802)
T ss_pred ecCeeecCCCcHHHHHHHHh-----ccc-CCCCCeEEEEeecCCCCccchhhHhhccCcc-ccccCHHHHHHHHHHhhcC
Confidence 45566666677777777664 222 344332 23356677788776542 1124566666666665431
Q ss_pred HhhcCCCCCCChhHHHHHHHHHHHhccCCCCC--CCCChhhHHHHHHHHHhhhhhh-hcccCCchHHHHHHHHHHHHhhc
Q 000315 84 TRITAPEAPYSDDVLKDIFQLIVGTFSGLKDT--GGPSFGRRVVILETLAKYRSCV-VMLDLECDELVNEMYSTFFAVAS 160 (1678)
Q Consensus 84 lRI~APdaPytd~qLkdIF~l~v~qf~~L~d~--~~p~f~~~~~lLe~lA~vks~v-l~~DL~~~~Li~~lF~~ff~~v~ 160 (1678)
.-|..++.+ +..+.+. +......-+.||....+|+.+- .++.+.+=..+...++.+|..-.
T Consensus 117 ------------gGL~~ll~~----l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~ 180 (802)
T PF13764_consen 117 ------------GGLEVLLSR----LDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQ 180 (802)
T ss_pred ------------CCHHHHHHH----HHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCcc
Confidence 112222222 2222222 2345566677888888887776 45667776778888888887544
Q ss_pred CCChhhHHHHHHHHHHHHhccccc--c---------------cHHHHHHHHHHhc
Q 000315 161 DDHPESVLSSMQTIMIVLLEESED--I---------------QEDLLVILLSALG 198 (1678)
Q Consensus 161 ~~~~~~V~~~m~~IL~~vI~Ese~--v---------------p~~lLd~IL~~l~ 198 (1678)
+.....+...++.||..|+.|... + ..+.++.+|+++.
T Consensus 181 ~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~ 235 (802)
T PF13764_consen 181 NSSQAEIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLN 235 (802)
T ss_pred ccccchHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhc
Confidence 334456666777777777777543 2 4566888888885
No 176
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=33.63 E-value=1.7e+03 Score=32.22 Aligned_cols=125 Identities=10% Similarity=0.035 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCC-CChHHHHHHHHhhhCCChh
Q 000315 278 TRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR-ADAPQILTALCDRLLDFDE 356 (1678)
Q Consensus 278 ~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~-~~~~eii~~L~~rL~D~DE 356 (1678)
.+..+.+.|-.++- .+++++...+.|..--++.|-..+-.....++...+.. ....+|+....-.+.|++.
T Consensus 486 ~~~lgr~AL~nLL~--------~N~dLl~~~IdrCYss~~~va~gYF~vlaev~~~~~~~~~~~~~LL~L~Lfklg~~~~ 557 (1120)
T PF14228_consen 486 RHSLGRRALKNLLE--------HNPDLLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREYPPCPFWELLNLVLFKLGDESS 557 (1120)
T ss_pred HHHHHHHHHHHHHH--------hhHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCCCCCCHHHhHHHHHHhhcCCcH
Confidence 33555555555554 34568888888888888888777777777777655431 2345677766778899999
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000315 357 NVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1678)
Q Consensus 357 kVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~ 410 (1678)
.||..|++-+..+....+..-..+-...+-+.+.++-+.|-+.|...|++....
T Consensus 558 eIR~~A~qLL~~Le~R~~~~s~~~~~~~f~~si~s~l~~vYk~aQ~eLS~~LA~ 611 (1120)
T PF14228_consen 558 EIRSKAMQLLRALEERFFSSSGSEKSGDFRESISSKLPAVYKKAQFELSKRLAK 611 (1120)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccceehhccCCcHHHHHHHHHHHHHHHHH
Confidence 999998888877765444322211122233455666566655555555554443
No 177
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=33.48 E-value=1.3e+02 Score=37.77 Aligned_cols=112 Identities=16% Similarity=0.181 Sum_probs=77.5
Q ss_pred hhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHH-HHHHHhhhcCCCh---hHHHHHHHHhHHHHhcCCCC-
Q 000315 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSV-FSEFLKRLTDRIV---AVRMSVLEHVKSCLLTDPSR- 337 (1678)
Q Consensus 263 ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~-w~~fL~R~~D~s~---~VR~~~ve~~~~iL~~~p~~- 337 (1678)
.++.+..-|.+++..+|..|-+.+--++++.. +.+..-.+ -..|+-|.-|++- .=|.+.++.+..++.-.-..
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~--~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~ 103 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEE--SLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK 103 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHH--HHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc
Confidence 34444445667889999999999999998763 22222111 2245666666543 34788888888888762111
Q ss_pred CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCC
Q 000315 338 ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS 376 (1678)
Q Consensus 338 ~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~ 376 (1678)
..-.-++.++....-++||+.|..+++.+|+++..++..
T Consensus 104 ~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~l 142 (371)
T PF14664_consen 104 EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPEL 142 (371)
T ss_pred cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHH
Confidence 122467788888888899999999999999999887664
No 178
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=33.32 E-value=1.5e+03 Score=31.39 Aligned_cols=140 Identities=21% Similarity=0.221 Sum_probs=103.6
Q ss_pred hhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhc-CCCCCC
Q 000315 261 SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT-DPSRAD 339 (1678)
Q Consensus 261 ~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~-~p~~~~ 339 (1678)
+.|+|.+.+-+.-+...+|..|+..++.++..-..+. ..+......++.-..|.+..||-...+....+... -|+. .
T Consensus 275 s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~-d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~-~ 352 (759)
T KOG0211|consen 275 SEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD-DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSA-T 352 (759)
T ss_pred hhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcccc-C
Confidence 3467777776677789999999999998887643332 77788888999999999999998877766553322 1222 1
Q ss_pred hHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhc----CCCCH-HHHHHHHHhhccCChhHHHHHHH
Q 000315 340 APQILTALCDRLLDFDENVRKQVVAVICDVACHAL----NSIPV-ETVKLVAERLRDKSVLVKRYTME 402 (1678)
Q Consensus 340 ~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l----~~V~~-elL~~LaeR~RDKK~~VR~eAm~ 402 (1678)
..+....+..-+.|..+.||.++-.-+..+++..- -.++. .+|-.+-.-+-|....||.....
T Consensus 353 ~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~ 420 (759)
T KOG0211|consen 353 RTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALAS 420 (759)
T ss_pred cccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhc
Confidence 23677888899999999999998888888776222 33333 35677888899999999976443
No 179
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=33.15 E-value=7e+02 Score=33.11 Aligned_cols=123 Identities=8% Similarity=0.139 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHhhhccCCCcchhccccchHHHhhhhccCCCC------chhHHHHhhccCcCCCCCHHHHHHHHHHHH
Q 000315 399 YTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFG------SDTIESVLCGSLFPTGFSVKDRVRHWVRIF 472 (1678)
Q Consensus 399 eAm~~La~LY~~~~~~~~~~~~~~~~~~wIPs~IL~~~Y~nd~~------~~lVE~vL~e~LlP~~~~~~~R~~~ll~l~ 472 (1678)
+|--.+..+|+.+..- .+ -..|+.-||.+.+. ...++.|+.+ .++.|.-.+-++.
T Consensus 246 eaa~Vve~ay~~~A~l-------~Q-----r~~li~EfYG~efqlfK~sn~~Tl~kil~~-------~pekk~~I~~~l~ 306 (652)
T KOG2050|consen 246 EAAYVVEYAYNDFATL-------EQ-----RQYLIQEFYGDEFQLFKDSNDKTLDKILAE-------APEKKASILRHLK 306 (652)
T ss_pred HHHHHHHHHHHhhccH-------HH-----HHHHHHHHhhHHHHHHhccCcccHHHHHHh-------ChHhHHHHHHHHH
Confidence 5556677777765321 01 12234445544322 2268888664 4567777777777
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhh--cCCchHHHHHHHHHHhhccHH
Q 000315 473 SGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRS--FAEPAKAEENFLILDQLKDAN 550 (1678)
Q Consensus 473 ~~LD~~~~kal~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kl~~~i~~Ls~~--fPDp~Ka~~~L~kf~klnD~R 550 (1678)
..+++..-+-...+ .-+-.+|..||..|. +.+...-|.-....+..+ -||..++.=.+-.++-.+|++
T Consensus 307 ~~I~~v~eKg~v~~----tivHk~mlEy~~~ad------e~e~~e~l~ll~elv~e~vHT~dGS~vAm~li~~a~aKeRK 376 (652)
T KOG2050|consen 307 AIITPVAEKGSVDH----TIVHKLMLEYLTIAD------EEEKSELLELLKELVPEMVHTRDGSRVAMKLIWHATAKERK 376 (652)
T ss_pred HHhHHHhhcchhHH----HHHHHHHHHHHHhCC------HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhCCHHHHH
Confidence 77777655544432 457788999998763 334444344333444433 356655432233333455654
No 180
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=32.83 E-value=8.1e+02 Score=33.95 Aligned_cols=183 Identities=13% Similarity=0.068 Sum_probs=103.1
Q ss_pred HHhhhccccChhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCc-c-ccHHHHHHHHhhccccchhhHHHHHH
Q 000315 593 SMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLL-G-GTEEELVNLLKEENEIIKEGILHVLA 670 (1678)
Q Consensus 593 l~R~S~lifNks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~lF-k-~~v~~Li~lL~~~~~~~~e~aLkiLa 670 (1678)
+-|++-+.++--.||.|+..+..- +-...++-+++-|..||+.+|.-- + +.+...+.+|.-=...+...||-|.+
T Consensus 243 lP~S~a~vV~~~aIPvl~~kL~~I---eyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~Alaiaa 319 (1051)
T KOG0168|consen 243 LPRSSAIVVDEHAIPVLLEKLLTI---EYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAA 319 (1051)
T ss_pred ccchhheeecccchHHHHHhhhhh---hhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777777788888876421 111245667888999999998532 2 22222222222111124467888888
Q ss_pred HhhcchHhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCcc--c-----hHHHHHHHHHHhhhhc--C-CCc
Q 000315 671 KAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGL--K-----SLSVLYKRLVDMLEEK--T-HLP 740 (1678)
Q Consensus 671 k~~k~i~e~~~~~~s~l~~~L~~lal~GtpkqAKyAVr~Laa~~~~~~~--~-----~~~~L~~~L~~~L~~~--~-~l~ 740 (1678)
++.+.++..-+..--...++|..+=.+-+.+-.-++.-|++.+...-.. . +-.+|++++..-|.-. . ..+
T Consensus 320 N~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~ 399 (1051)
T KOG0168|consen 320 NCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNG 399 (1051)
T ss_pred HHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCccccccc
Confidence 8888765432211123467788877787777777888888777654321 1 1123444444444311 1 223
Q ss_pred hHHHH---HHHHHhhcccccccchHHHHHHHHHhhhccccc
Q 000315 741 AVLQS---LGCIAQTAMPVFETRESEIEEFIKSKILRCSNK 778 (1678)
Q Consensus 741 t~L~s---Lg~Iaq~aP~vfe~~~~eI~~fIik~ILl~~~~ 778 (1678)
++... |..++--.|..|.+....=+..+++.||.....
T Consensus 400 ~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~ 440 (1051)
T KOG0168|consen 400 TYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSK 440 (1051)
T ss_pred chhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCc
Confidence 33233 333333358888876444345567888877654
No 181
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=31.52 E-value=1.1e+03 Score=29.49 Aligned_cols=168 Identities=13% Similarity=0.189 Sum_probs=91.9
Q ss_pred HHhhcCCCCCCCCcchHHHHHHHHHhh-CchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCC-CCC------chhh
Q 000315 229 VSSMSGDSRPGHSHIDYHEVIYDVYRC-SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP-GSA------NNEQ 300 (1678)
Q Consensus 229 ~~il~~d~~~~~~~~~~h~Li~eL~~~-~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~-~s~------~a~~ 300 (1678)
..++.|++.........+.|..|+++. .-.+|...+|.|+. +.|..++..++-++... +.. +...
T Consensus 49 K~IL~G~~e~ep~~e~v~qLa~Ei~~~dll~~Li~~L~~L~f-------EsrKdv~~if~~llr~~~~~~~~p~v~yl~~ 121 (335)
T PF08569_consen 49 KEILYGDGEPEPNPEQVAQLAQEIYRSDLLYLLIRNLPKLDF-------ESRKDVAQIFSNLLRRQIGSRSPPTVDYLER 121 (335)
T ss_dssp HHHHHS-SS----HHHHHHHHHHHHHHTHHHHHHHTGGGS-H-------HHHHHHHHHHHHHHT--BTTB--HHHHHHHT
T ss_pred HHHhcCCCCCCCCHHHHHHHHHHHHHhCHHHHHHHHhhhCCC-------cccccHHHHHHHHHhhccCCCCCchHHHHHh
Confidence 356777654443444578899999877 23344556666666 48999999999998763 222 3456
Q ss_pred c-HHHHHHHHhhhcCCChhHHHHHH-------HHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhh
Q 000315 301 F-HSVFSEFLKRLTDRIVAVRMSVL-------EHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACH 372 (1678)
Q Consensus 301 y-~~~w~~fL~R~~D~s~~VR~~~v-------e~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~ 372 (1678)
| |++...++.-..+.+..+=+..+ +.+..+++.++ ...-+.+-..-+.=.|=..|..++.++-..
T Consensus 122 ~~peil~~L~~gy~~~dial~~g~mlRec~k~e~l~~~iL~~~-------~f~~ff~~~~~~~Fdiasdaf~t~~~llt~ 194 (335)
T PF08569_consen 122 HRPEILDILLRGYENPDIALNCGDMLRECIKHESLAKIILYSE-------CFWKFFKYVQLPNFDIASDAFSTFKELLTR 194 (335)
T ss_dssp --THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHHHHHHHTSG-------GGGGHHHHTTSSSHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHhcCccccchHHHHHHHHHhhHHHHHHHhCcH-------HHHHHHHHhcCCccHhHHHHHHHHHHHHhc
Confidence 7 88888888777765543322111 01111122111 112233444455555656666666554433
Q ss_pred hcCCCCH-------HHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000315 373 ALNSIPV-------ETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1678)
Q Consensus 373 ~l~~V~~-------elL~~LaeR~RDKK~~VR~eAm~~La~LY~~ 410 (1678)
+-..+.. ..+......+.-.+.-.|+.++..||.|.-.
T Consensus 195 hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellld 239 (335)
T PF08569_consen 195 HKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLD 239 (335)
T ss_dssp SHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHc
Confidence 2222211 2345666677777888888999988888764
No 182
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=31.39 E-value=9e+02 Score=30.43 Aligned_cols=223 Identities=17% Similarity=0.210 Sum_probs=0.0
Q ss_pred CCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCchHHH
Q 000315 509 DGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDF 588 (1678)
Q Consensus 509 ~~d~~ei~~kl~~~i~~Ls~~fPDp~Ka~~~L~kf~klnD~Ri~kLLk~~idp~td~~tv~~a~kELlkkL~~k~~~~e~ 588 (1678)
+.+++....++.+.|-.+...| ..|=++.+..|.+--=.-+|++|.. ++++..|..+. +....|
T Consensus 102 d~~e~~~l~kvK~~i~~~~~ly--~~kY~e~f~~~l~~fv~~vw~lL~~-~~~~~~~D~lv-------------~~al~F 165 (370)
T PF08506_consen 102 DDDEPGLLEKVKAWICENLNLY--AEKYEEEFEPFLPTFVQAVWNLLTK-ISQQPKYDILV-------------SKALQF 165 (370)
T ss_dssp -SSS--HHHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHTC---SSGGGHHHH-------------HHHHHH
T ss_pred CcccccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH-hhhcccccHHH-------------HHHHHH
Q ss_pred HHHHHHhhhcc-cc-ChhHHHHHHHHH------------------------HhhcccchhhhHHHHHHHHHHHHhhCCcC
Q 000315 589 LSTLSMKCSYL-LF-NKEHVKEILLEV------------------------AAQKSSANAQFMQSCMDILGILARFSPLL 642 (1678)
Q Consensus 589 l~~Ll~R~S~l-if-Nks~V~~LL~~v------------------------~~~~~~~~~~~~~~a~eLL~~IS~~~P~l 642 (1678)
+..+..+..+- +| ++.|+..|++.+ ..-..+...+....|.++|..+++.++..
T Consensus 166 L~~v~~~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~ 245 (370)
T PF08506_consen 166 LSSVAESPHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQ 245 (370)
T ss_dssp HHHHHTSHHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcchhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHH
Q ss_pred ccccHHHHHHHHhh-------ccccchhhHHHHHHHhhcchHhhhhcccc-----hHHHHHHHHhh-------cCChHHH
Q 000315 643 LGGTEEELVNLLKE-------ENEIIKEGILHVLAKAGGTIREQLAATSS-----SVDLLLERLCL-------EGSRRQA 703 (1678)
Q Consensus 643 Fk~~v~~Li~lL~~-------~~~~~~e~aLkiLak~~k~i~e~~~~~~s-----~l~~~L~~lal-------~GtpkqA 703 (1678)
...-+...+..+.. .+...+++||..+..++-.....-.+... .+..-+..... ...|-.-
T Consensus 246 v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLk 325 (370)
T PF08506_consen 246 VTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILK 325 (370)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchH
Q ss_pred HHHHHHHHhhcCCCccchHHHHHHHHHHhhhhcCCCchHHHHHH
Q 000315 704 KYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLG 747 (1678)
Q Consensus 704 KyAVr~Laa~~~~~~~~~~~~L~~~L~~~L~~~~~l~t~L~sLg 747 (1678)
=.|++.+....+-=....+..++..++.+|.......+..++.+
T Consensus 326 a~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 326 ADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp HHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhh
No 183
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=30.57 E-value=1.4e+02 Score=32.49 Aligned_cols=71 Identities=15% Similarity=0.229 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccH------HHHHHHHhh-ccccchhhHHHHHHHhhcc
Q 000315 603 KEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE------EELVNLLKE-ENEIIKEGILHVLAKAGGT 675 (1678)
Q Consensus 603 ks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v------~~Li~lL~~-~~~~~~e~aLkiLak~~k~ 675 (1678)
+..+..|.+++.. .|....-.|+.||..+.+.|...|...+ ++|++++.. ..+.+...+|..+..|+..
T Consensus 36 k~a~ral~KRl~~----~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 36 KDCLKAIMKRLNH----KDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 4445555555432 2222334567788888888888887553 667777776 3445677888888888755
Q ss_pred hH
Q 000315 676 IR 677 (1678)
Q Consensus 676 i~ 677 (1678)
++
T Consensus 112 f~ 113 (144)
T cd03568 112 FK 113 (144)
T ss_pred hC
Confidence 44
No 184
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=30.36 E-value=3.8e+02 Score=33.37 Aligned_cols=145 Identities=15% Similarity=0.134 Sum_probs=92.7
Q ss_pred hhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHH
Q 000315 264 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQI 343 (1678)
Q Consensus 264 iP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~ei 343 (1678)
+|.--....+-+.+.|..|..-|-.+.-..+-+..=.--.-|.-.|+=.++.++.||.....-++.|..|||.- ...+
T Consensus 85 ~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~--Qe~v 162 (342)
T KOG2160|consen 85 IPIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKS--QEQV 162 (342)
T ss_pred hhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHH--HHHH
Confidence 45555556677888899999988766644321111111235888888889999999999999999999999842 1233
Q ss_pred HH------HHHhhhCCChhHHHHHHHHHHHHhhhhhcCC------C-CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000315 344 LT------ALCDRLLDFDENVRKQVVAVICDVACHALNS------I-PVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1678)
Q Consensus 344 i~------~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~------V-~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~ 410 (1678)
++ -+..--.|.+..||..|.-||+.+....... + ...+|..+.++= +.....++.|+..++.|-..
T Consensus 163 ~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~-~~~~~lkrK~~~Ll~~Ll~~ 241 (342)
T KOG2160|consen 163 IELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSN-NTSVKLKRKALFLLSLLLQE 241 (342)
T ss_pred HHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcC-CcchHHHHHHHHHHHHHHHh
Confidence 31 2222237999999999999998876533221 2 223443333321 13455666677777766664
Q ss_pred H
Q 000315 411 C 411 (1678)
Q Consensus 411 ~ 411 (1678)
.
T Consensus 242 ~ 242 (342)
T KOG2160|consen 242 D 242 (342)
T ss_pred h
Confidence 3
No 185
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=29.99 E-value=2.1e+02 Score=35.08 Aligned_cols=128 Identities=18% Similarity=0.240 Sum_probs=0.0
Q ss_pred hhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchh--------hcHHHHHHHHhhhcCCCh---------hHH
Q 000315 258 QILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE--------QFHSVFSEFLKRLTDRIV---------AVR 320 (1678)
Q Consensus 258 ~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~--------~y~~~w~~fL~R~~D~s~---------~VR 320 (1678)
.+|.+=+..|+..|.+....+...|.++|..|.+-.|..+++ +++.+=+-.--|..+... +||
T Consensus 52 ~iL~~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR 131 (330)
T PF11707_consen 52 SILQNHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIR 131 (330)
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHH
Q ss_pred HHHHHHhHHHHhcCC---------CCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhcc
Q 000315 321 MSVLEHVKSCLLTDP---------SRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRD 391 (1678)
Q Consensus 321 ~~~ve~~~~iL~~~p---------~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RD 391 (1678)
..+|+++-.+|...+ .+....-++++|.. |+.+.|+.- |.++.+++-.
T Consensus 132 ~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~---D~~~~v~~i--------------------L~~l~~~Vl~ 188 (330)
T PF11707_consen 132 TNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRK---DPPETVILI--------------------LETLKDKVLK 188 (330)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccC---CCHHHHHHH--------------------HHHHHHHhcc
Q ss_pred CChhHHH---------HHHHHHHHHHH
Q 000315 392 KSVLVKR---------YTMERLADIFR 409 (1678)
Q Consensus 392 KK~~VR~---------eAm~~La~LY~ 409 (1678)
-. .|.+ .++..|+.+|.
T Consensus 189 ~~-~v~r~~K~~~fn~~~L~~l~~Ly~ 214 (330)
T PF11707_consen 189 DS-SVSRSTKCKLFNEWTLSQLASLYS 214 (330)
T ss_pred CC-CCChhhhhhhcCHHHHHHHHHHhc
No 186
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=28.53 E-value=2.4e+02 Score=33.23 Aligned_cols=97 Identities=15% Similarity=0.231 Sum_probs=62.7
Q ss_pred CChHHHHHHHHHHHHhhcCC-CCCchhhcHH-HHHHHHhhhcCC----ChhHHHHHHHHhHHHHh---cCC-CCCChHHH
Q 000315 274 DQLDTRLKAVGLVGDLFAVP-GSANNEQFHS-VFSEFLKRLTDR----IVAVRMSVLEHVKSCLL---TDP-SRADAPQI 343 (1678)
Q Consensus 274 ed~~~Rl~At~llG~mfs~~-~s~~a~~y~~-~w~~fL~R~~D~----s~~VR~~~ve~~~~iL~---~~p-~~~~~~ei 343 (1678)
.....++.+.+++..||+.+ +....-.|.. ..-.-+...... ...+|+++...+-++-. .++ ..+...++
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~l 201 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSEL 201 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 78999999999999999975 4445556666 444444444443 68899999888876422 223 22333456
Q ss_pred HHHHHhhhC-C-ChhHHHHHHHHHHHHhh
Q 000315 344 LTALCDRLL-D-FDENVRKQVVAVICDVA 370 (1678)
Q Consensus 344 i~~L~~rL~-D-~DEkVR~aaV~ai~~la 370 (1678)
+..+..-+. . .|+.+....+.+++.+.
T Consensus 202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~ 230 (268)
T PF08324_consen 202 LSSIIEVLSREESDEEALYRLLVALGTLL 230 (268)
T ss_dssp HHHHHHHCHCCHTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHh
Confidence 776666332 2 46666666677777776
No 187
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=28.10 E-value=4.6e+02 Score=27.84 Aligned_cols=81 Identities=7% Similarity=0.027 Sum_probs=57.4
Q ss_pred HHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcC-----CCCHHHHHHHHHhhccC---ChhHHHHH
Q 000315 329 SCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN-----SIPVETVKLVAERLRDK---SVLVKRYT 400 (1678)
Q Consensus 329 ~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~-----~V~~elL~~LaeR~RDK---K~~VR~eA 400 (1678)
+++...+ ....+.+.+|.+||...+..|.+.|+..+-.+....-. ..+.+.+..+...+..+ ...||..+
T Consensus 26 d~I~~~~--~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~ki 103 (133)
T cd03561 26 DLINLKP--NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKA 103 (133)
T ss_pred HHHhCCC--CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 4444443 34679999999999999999999999888777653322 22446666666666654 56899999
Q ss_pred HHHHHHHHHHH
Q 000315 401 MERLADIFRGC 411 (1678)
Q Consensus 401 m~~La~LY~~~ 411 (1678)
+..+...+..+
T Consensus 104 l~ll~~W~~~f 114 (133)
T cd03561 104 LELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHh
Confidence 88877766544
No 188
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=28.00 E-value=92 Score=25.98 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=25.3
Q ss_pred HHHHHHHhhhCCChhHHHHHHHHHHHHhh
Q 000315 342 QILTALCDRLLDFDENVRKQVVAVICDVA 370 (1678)
Q Consensus 342 eii~~L~~rL~D~DEkVR~aaV~ai~~la 370 (1678)
..++.|...|.+.|..||.+|+-+++.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 36788889999999999999999998765
No 189
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=27.97 E-value=1.3e+02 Score=30.32 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHHHHhhhhhcCCCCH---HHHHHHHHhhccCChhHHHHHHHHHHHHHHHHh
Q 000315 355 DENVRKQVVAVICDVACHALNSIPV---ETVKLVAERLRDKSVLVKRYTMERLADIFRGCC 412 (1678)
Q Consensus 355 DEkVR~aaV~ai~~la~~~l~~V~~---elL~~LaeR~RDKK~~VR~eAm~~La~LY~~~~ 412 (1678)
+...|.++|-++|.+....+..||. ++|..|+....| ...||..+=++|+++++.+.
T Consensus 2 ~~~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~ 61 (90)
T PF11919_consen 2 DLRRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQ 61 (90)
T ss_dssp H-HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCc
Confidence 3457889999999999988999987 567889999997 78999999999999999874
No 190
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=27.29 E-value=2.5e+03 Score=32.22 Aligned_cols=157 Identities=10% Similarity=0.133 Sum_probs=80.3
Q ss_pred hHHhHHHHHHHhcc--hhhhcC----CCcchHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChh
Q 000315 48 ILEAMQPFLNAIVQ--PVLLKH----QDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFG 121 (1678)
Q Consensus 48 ~~~sl~~~~~~Lv~--~~LL~H----kD~~Vr~~vAcCLadIlRI~APdaPytd~qLkdIF~l~v~qf~~L~d~~~p~f~ 121 (1678)
+.+++..+.++|.. ..=|.. .---++.+|-.|..++-||-- +-..||..+-.-|-..+-..+ -.
T Consensus 1083 ~~eai~~fv~AL~~vS~eEl~~~~~pr~FsLqKLveIa~~Nm~Rirl--------~W~~iW~~l~~hf~~vg~~~n--~~ 1152 (1780)
T PLN03076 1083 NSEAIIDFVKALCKVSMEELRSPSDPRVFSLTKIVEIAHYNMNRIRL--------VWSSIWHVLSDFFVTIGCSEN--LS 1152 (1780)
T ss_pred CHHHHHHHHHHHHHhhHHHHccCCCCchhHHHHHHHHHHhcccchhe--------ehHhHHHHHHHHHHHhcCCcc--hh
Confidence 45677777777743 333322 223356667777777777654 223455555555544332222 22
Q ss_pred hHHHHHHHHHhhhh-hhhcccCCc---hHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhccc-ccccHHHHHHHHHH
Q 000315 122 RRVVILETLAKYRS-CVVMLDLEC---DELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEES-EDIQEDLLVILLSA 196 (1678)
Q Consensus 122 ~~~~lLe~lA~vks-~vl~~DL~~---~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Es-e~vp~~lLd~IL~~ 196 (1678)
-.+|.+.+|-.+-. |.-.-+|+. +..+..=|..++. ......|...+...+..+|... +.|-. =++.||.-
T Consensus 1153 va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~---~s~~~eVrE~ILeCv~qmI~s~~~nIkS-GWktIF~V 1228 (1780)
T PLN03076 1153 IAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMR---KSNAVEIRELIIRCVSQMVLSRVNNVKS-GWKSMFMV 1228 (1780)
T ss_pred HHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHH---hcCchHHHHHHHHHHHHHHHHHHhhhhc-CcHHHHHH
Confidence 46777776654311 111223321 2233344444443 3334466667777777666653 33433 35666665
Q ss_pred hc---CCCc----HHHHHHHHHHHHHhhh
Q 000315 197 LG---RNKN----DTARRLAMNVIEQCAG 218 (1678)
Q Consensus 197 l~---~~k~----~~a~~LA~~vi~~~~d 218 (1678)
|. ..+. ..||+....|++....
T Consensus 1229 Ls~aa~d~~e~iV~lAFetl~~I~~d~f~ 1257 (1780)
T PLN03076 1229 FTTAAYDDHKNIVLLAFEIIEKIIREYFP 1257 (1780)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHHhhhh
Confidence 52 1111 1678877777766554
No 191
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=27.14 E-value=2e+03 Score=30.93 Aligned_cols=101 Identities=15% Similarity=0.085 Sum_probs=67.5
Q ss_pred hhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHH
Q 000315 264 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQI 343 (1678)
Q Consensus 264 iP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~~~~ei 343 (1678)
+|.+.+|-.-++.+.|.+..+-=...+-+ ..++.-..+|+-.-.|..|+.+.||...+-....||..... .....|
T Consensus 436 ls~~~~e~e~dn~~~~s~s~e~qk~~k~~---~~v~evg~~~~~~~~rClDkaaavR~~al~s~tk~l~l~~~-~~~~sI 511 (1529)
T KOG0413|consen 436 LSDSDEENEGDNEENVSKSKEEQKKEKKA---KEVKEVGVLYNIVYMRCLDKAAAVRLHALNSLTKILQLQSH-REAFSI 511 (1529)
T ss_pred cCchHhhhcccchhhhhhHHHHHHHhhhh---hhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc-cchHHH
Confidence 33344444445555554443332222222 23344457888888999999999999999999888875433 345689
Q ss_pred HHHHHhhhCCChhHHHHHHHHHHHH
Q 000315 344 LTALCDRLLDFDENVRKQVVAVICD 368 (1678)
Q Consensus 344 i~~L~~rL~D~DEkVR~aaV~ai~~ 368 (1678)
+.++..--+|+---||.+++-++..
T Consensus 512 l~~~inS~~d~~fs~ves~~~~~~~ 536 (1529)
T KOG0413|consen 512 LCATINSEMDEKFSAVESLEDLNVS 536 (1529)
T ss_pred HHHhcCCccccchhHHHhchhhhhc
Confidence 9999988899888888887766643
No 192
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=26.88 E-value=4.7e+02 Score=29.45 Aligned_cols=66 Identities=14% Similarity=0.176 Sum_probs=55.2
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHHhHHHHhc---CCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh
Q 000315 303 SVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT---DPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA 373 (1678)
Q Consensus 303 ~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~---~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~ 373 (1678)
..|...|.-+.+.+..||...++.+.-++.- || .+.+..|.-..-|++..||..|.....++....
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 3577888888999999999999999988863 55 378899999999999999999888887775433
No 193
>PF02237 BPL_C: Biotin protein ligase C terminal domain; InterPro: IPR003142 This C-terminal domain has an SH3-like barrel fold, the function of which is unknown. It is found associated with prokaryotic bifunctional transcriptional repressors [] and eukaryotic enzymes involved in biotin utilization [, ]. In Escherichia coli the biotin operon repressor (BirA) is a bifunctional protein. BirA acts both as the acetyl-coA carboxylase biotin holoenzyme synthetase (6.3.4.15 from EC) and as the biotin operon repressor. DNA sequence analysis of mutations indicates that the helix-turn-helix DNA binding region is located at the N terminus while mutations affecting enzyme function, although mapping over a large region, are found mainly in the central part of the protein's primary sequence [].; GO: 0006464 protein modification process; PDB: 3RUX_A 2CGH_A 3L1A_B 3L2Z_A 1HXD_A 1BIB_A 2EWN_B 1BIA_A 2EJ9_A 3FJP_A ....
Probab=26.86 E-value=1.5e+02 Score=26.02 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=31.3
Q ss_pred cCceEEEecCCCCceEEEEEEeecCCCCeeEEEccCCcceee
Q 000315 1380 IGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVL 1421 (1678)
Q Consensus 1380 vG~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdDgd~E~l 1421 (1678)
+|++|+|..+ ...|.|.+.+.|+. +.=.|+.+||..+.+
T Consensus 2 lG~~V~v~~~--~~~~~G~~~gId~~-G~L~v~~~~g~~~~i 40 (48)
T PF02237_consen 2 LGQEVRVETG--DGEIEGIAEGIDDD-GALLVRTEDGSIRTI 40 (48)
T ss_dssp TTSEEEEEET--SCEEEEEEEEEETT-SEEEEEETTEEEEEE
T ss_pred CCCEEEEEEC--CeEEEEEEEEECCC-CEEEEEECCCCEEEE
Confidence 6999999994 34779999999875 888888888855544
No 194
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=26.01 E-value=3.2e+02 Score=36.46 Aligned_cols=173 Identities=13% Similarity=0.081 Sum_probs=103.7
Q ss_pred hhcccccCCChHHHHHHHHHHHHhhcC---CCCCchhhcHHHHH---HHHhhhcCCChhHHHHHHHHhHH------HHhc
Q 000315 266 YLTGELLTDQLDTRLKAVGLVGDLFAV---PGSANNEQFHSVFS---EFLKRLTDRIVAVRMSVLEHVKS------CLLT 333 (1678)
Q Consensus 266 ~Le~EL~sed~~~Rl~At~llG~mfs~---~~s~~a~~y~~~w~---~fL~R~~D~s~~VR~~~ve~~~~------iL~~ 333 (1678)
....+|.+-.+..|..+.+-.--|--. .+....++.-.++. .++.= -=++..+|.+|+.+.+. +|.+
T Consensus 335 f~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~-~~kd~~~~aaa~l~~~s~srsV~aL~t 413 (678)
T KOG1293|consen 335 FICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLP-PIKDHDFVAAALLCLKSFSRSVSALRT 413 (678)
T ss_pred HHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHcccc-ccccHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345667778888887766533211110 01122233333322 22211 12467788888777654 4555
Q ss_pred CCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHH-----HHHHHHHhhccCChhHHHHHHHHHHHHH
Q 000315 334 DPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE-----TVKLVAERLRDKSVLVKRYTMERLADIF 408 (1678)
Q Consensus 334 ~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~e-----lL~~LaeR~RDKK~~VR~eAm~~La~LY 408 (1678)
-+.+ .++..-|..-|+||+-.|-..+.-+||.+.. .|...-.. .+..|..-+.|+-+.+|+.+...| |
T Consensus 414 g~~~---~dv~~plvqll~dp~~~i~~~~lgai~NlVm-efs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~L---r 486 (678)
T KOG1293|consen 414 GLKR---NDVAQPLVQLLMDPEIMIMGITLGAICNLVM-EFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVL---R 486 (678)
T ss_pred CCcc---chhHHHHHHHhhCcchhHHHHHHHHHHHHHh-hcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHH---H
Confidence 5543 3688888889999999999999999998753 22222222 356888999999999998777665 3
Q ss_pred HHHhhhccCCCcchhccccchHHHhhhhccCCCCchhHHHH
Q 000315 409 RGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESV 449 (1678)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~wIPs~IL~~~Y~nd~~~~lVE~v 449 (1678)
+..+.. +...-..-+.-||...+.+ |+||++....|+.
T Consensus 487 ~l~f~~--de~~k~~~~~ki~a~~i~~-l~nd~d~~Vqeq~ 524 (678)
T KOG1293|consen 487 HLMFNC--DEEEKFQLLAKIPANLILD-LINDPDWAVQEQC 524 (678)
T ss_pred HHHhcc--hHHHHHHHHHHhhHHHHHH-HHhCCCHHHHHHH
Confidence 333321 0001123467889888876 5888764444444
No 195
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=25.90 E-value=2.9e+02 Score=35.51 Aligned_cols=38 Identities=13% Similarity=0.222 Sum_probs=30.9
Q ss_pred cccCceEEEecCCCCceEEEEEEeecCCC------CeeEEEccC
Q 000315 1378 DLIGYRIKVWWPMDKQFYEGTIKSYDPIK------KKHVILYDD 1415 (1678)
Q Consensus 1378 ~lvG~rv~V~Wp~D~~~Y~G~V~~y~~~~------~~H~v~YdD 1415 (1678)
--||.+|.++|..|..||.++|....... .+.-|.|..
T Consensus 54 ~~VGekVla~~~~Dg~~~~A~VI~~R~~~~~~~~~~~YYVHY~g 97 (450)
T PLN00104 54 LEVGTRVMCRWRFDGKYHPVKVIERRRGGSGGPNDYEYYVHYTE 97 (450)
T ss_pred eccCCEEEEEECCCCCEEEEEEEEEeccCCCCCCCceEEEEEec
Confidence 35999999999999999999999988632 356677753
No 196
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=24.97 E-value=1.1e+03 Score=29.58 Aligned_cols=199 Identities=17% Similarity=0.169 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHH----HHHHHhhcCCCCCCCCcchHHHHHHHHHhh--C-----chhhhhhhhhhccccc
Q 000315 204 TARRLAMNVIEQCAGKLEAGIK----QFLVSSMSGDSRPGHSHIDYHEVIYDVYRC--S-----PQILSGVVPYLTGELL 272 (1678)
Q Consensus 204 ~a~~LA~~vi~~~~dkL~~~I~----q~f~~il~~d~~~~~~~~~~h~Li~eL~~~--~-----P~lL~~ViP~Le~EL~ 272 (1678)
+||++.+-+|.... -++..++ -|+.-.+..+....-+...+..+|+.+..+ . ..++..++--.|+
T Consensus 44 a~yRilRy~i~d~~-~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~--- 119 (371)
T PF14664_consen 44 AGYRILRYLISDEE-SLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEH--- 119 (371)
T ss_pred HHHHHHHHHHcCHH-HHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhC---
Confidence 77888877775542 2222222 111112222221111223577888888777 3 4555566666665
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCC-------CChHHHHH
Q 000315 273 TDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR-------ADAPQILT 345 (1678)
Q Consensus 273 sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~-------~~~~eii~ 345 (1678)
.+...|..|.+||.++.-... .++ .+-.-+...+.-..|-..++=-.++...-++| ++|.. -+...++.
T Consensus 120 -~~D~lr~~cletL~El~l~~P-~lv-~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lL-d~p~tR~yl~~~~dL~~l~a 195 (371)
T PF14664_consen 120 -EDDRLRRICLETLCELALLNP-ELV-AECGGIRVLLRALIDGSFSISESLLDTLLYLL-DSPRTRKYLRPGFDLESLLA 195 (371)
T ss_pred -CchHHHHHHHHHHHHHHhhCH-HHH-HHcCCHHHHHHHHHhccHhHHHHHHHHHHHHh-CCcchhhhhcCCccHHHHHH
Confidence 888999999999999875421 111 11112334444455544455445555555544 44431 22344555
Q ss_pred HHHhh----hCCChhHHHHH-HHHHHHHhhh-----hhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000315 346 ALCDR----LLDFDENVRKQ-VVAVICDVAC-----HALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1678)
Q Consensus 346 ~L~~r----L~D~DEkVR~a-aV~ai~~la~-----~~l~~V~~elL~~LaeR~RDKK~~VR~eAm~~La~LY~~ 410 (1678)
.+.+- ..+..+-=|.+ +..+|..+-. ..+..-+...++.+.+=++=..+.||+.-+..|-.+++.
T Consensus 196 pftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllri 270 (371)
T PF14664_consen 196 PFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRI 270 (371)
T ss_pred hhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCC
Confidence 55554 22222111333 2333333322 111222336788888888888889999999999999984
No 197
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=24.96 E-value=6.6e+02 Score=31.73 Aligned_cols=123 Identities=17% Similarity=0.243 Sum_probs=83.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhcchhhhcCCCcchHHHHHHHHHHHHhhcCCCCCC--Ch
Q 000315 18 TPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPY--SD 95 (1678)
Q Consensus 18 ~~~~s~~eLlkrL~~L~~~Ls~~dQ~~~~~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~APdaPy--td 95 (1678)
.||......+..|.+|-+.+.. |+. ..+..-++.+.-.|...-++-|--.-||..+.--|-.|++-+. ..+. ..
T Consensus 223 ~p~p~l~~vL~fl~~Ll~~~~~--~~~-~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~-~~~~~~~~ 298 (373)
T PF14911_consen 223 APPPRLASVLAFLQQLLKRLQR--QNE-NQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQ-VGSSGEPR 298 (373)
T ss_pred CCCCcHHHHHHHHHHHHHhcCc--ccc-hhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHccc-ccCcchHH
Confidence 3677777888888888777652 222 2455556666667777777777677799998888888888655 1222 24
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHHhhc
Q 000315 96 DVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVAS 160 (1678)
Q Consensus 96 ~qLkdIF~l~v~qf~~L~d~~~p~f~~~~~lLe~lA~vks~vl~~DL~~~~Li~~lF~~ff~~v~ 160 (1678)
+++..+|.-|+.---. -|-.+||.+|+++|... .++|..||-++=..+.
T Consensus 299 ~~l~s~lrsfvqk~l~------~~t~~~f~~l~~vA~l~----------p~lV~~Lip~i~q~l~ 347 (373)
T PF14911_consen 299 EQLTSVLRSFVQKYLA------HYTYQYFQFLEKVAELD----------PQLVISLIPTIRQSLK 347 (373)
T ss_pred HHHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHhC----------HHHHHHHHHHHHHHHH
Confidence 7888888888874322 24478999999999864 4566666666555443
No 198
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=24.86 E-value=6.8e+02 Score=33.93 Aligned_cols=152 Identities=18% Similarity=0.301 Sum_probs=93.8
Q ss_pred ChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHhcCCC-----c----------H-----------HHHHHHHHHHHHh
Q 000315 163 HPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNK-----N----------D-----------TARRLAMNVIEQC 216 (1678)
Q Consensus 163 ~~~~V~~~m~~IL~~vI~Ese~vp~~lLd~IL~~l~~~k-----~----------~-----------~a~~LA~~vi~~~ 216 (1678)
.|.-+.+.|-|...+.=-.++...+.++.-|=..|..+. + + .--+|..+||+--
T Consensus 455 ~PPGims~ldD~~At~Ha~~~~aDqa~~qrLn~~~~s~phF~~~s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm 534 (1106)
T KOG0162|consen 455 RPPGIMSALDDVCATAHADSEGADQALLQRLNKLFGSHPHFESRSNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELM 534 (1106)
T ss_pred CCchHHHHHHHHHHHhccccchhHHHHHHHHHHHhcCCCccccccCceEEEEeccceeeecccccccchhHHHHHHHHHH
Confidence 477788888888888888888888887776654553221 0 0 2246777777655
Q ss_pred hhhhHHHHHHHHHHhhcCCC--CCCCC--c--chHHHHHHHHHhhCchhhhhhhhhhcccccCCChHHH-HHHHHHHHHh
Q 000315 217 AGKLEAGIKQFLVSSMSGDS--RPGHS--H--IDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTR-LKAVGLVGDL 289 (1678)
Q Consensus 217 ~dkL~~~I~q~f~~il~~d~--~~~~~--~--~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~R-l~At~llG~m 289 (1678)
-..=.++++..|-+-+..++ .+... . ..+.+|+-.|.+|.|..+-.+=|.=+- --.|=++-| +.-++-||
T Consensus 535 ~ts~~~Fl~slFPe~v~~dskrRP~Tag~kIkkqANdLVeTLmKc~P~YIR~IKPNeTK-~pnD~ee~~V~HQveYLG-- 611 (1106)
T KOG0162|consen 535 QTSENPFLKSLFPENVDADSKRRPPTAGDKIKKQANDLVETLMKCQPHYIRCIKPNETK-SPNDWEESRVKHQVEYLG-- 611 (1106)
T ss_pred hccchHHHHHhCchhhcccccCCCCCchhhHHhhHHHHHHHHHhcCcceeEeeCCCCCC-CCccHHHHHHHHHHHhcc--
Confidence 54445555555544343332 12222 2 258999999999999999888887322 222223333 33444444
Q ss_pred hcCCC-C---CchhhcHHHHHHHHhhhcCCChhH
Q 000315 290 FAVPG-S---ANNEQFHSVFSEFLKRLTDRIVAV 319 (1678)
Q Consensus 290 fs~~~-s---~~a~~y~~~w~~fL~R~~D~s~~V 319 (1678)
... . -..=+|+.+|..|+.||.=.+|.-
T Consensus 612 --LqENiRvRRAGfAYRr~F~kF~qRyailsp~t 643 (1106)
T KOG0162|consen 612 --LQENIRVRRAGFAYRRAFDKFAQRYAILSPQT 643 (1106)
T ss_pred --hhhheeehhhhhHHHHHHHHHHHHheecCccc
Confidence 221 0 112369999999999998888765
No 199
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=24.26 E-value=1.8e+03 Score=29.40 Aligned_cols=49 Identities=20% Similarity=0.168 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCC
Q 000315 245 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG 294 (1678)
Q Consensus 245 ~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~ 294 (1678)
+..++..++...|+.|.+-+|.|...|..-++..|.+ +..+--+++...
T Consensus 182 LLrvlS~Vye~~P~~i~PhlP~l~~lL~q~~p~~~~l-l~~l~~LI~Qk~ 230 (851)
T KOG3723|consen 182 LLRVLSAVYEKQPQPINPHLPELLALLSQLEPEQYHL-LRLLHVLIKQKQ 230 (851)
T ss_pred HHHHHHHHHhcCCCccCcccHHHHHHhcCCCHHHHHH-HHHHHHHHHhcc
Confidence 5678889999999999999999999999999888654 455555666543
No 200
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=24.22 E-value=27 Score=40.84 Aligned_cols=18 Identities=39% Similarity=0.577 Sum_probs=10.9
Q ss_pred cccccccCCCCCCccccc
Q 000315 1610 SREEANEDGKSDSEGNEE 1627 (1678)
Q Consensus 1610 ~~~~~~~~~~~d~~~~~~ 1627 (1678)
+++++++++++|+++.++
T Consensus 244 s~~d~d~e~esd~de~Ee 261 (303)
T KOG3064|consen 244 SDEDSDSEDESDSDEIEE 261 (303)
T ss_pred cccccccccCCchhhHHH
Confidence 555656666666665543
No 201
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=24.16 E-value=4.2e+02 Score=32.49 Aligned_cols=161 Identities=10% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcC----------CChhh-----HHHHHHHHHHHHhcccc-------cccHHHHHHHHHHhcCCCcH--
Q 000315 148 VNEMYSTFFAVASD----------DHPES-----VLSSMQTIMIVLLEESE-------DIQEDLLVILLSALGRNKND-- 203 (1678)
Q Consensus 148 i~~lF~~ff~~v~~----------~~~~~-----V~~~m~~IL~~vI~Ese-------~vp~~lLd~IL~~l~~~k~~-- 203 (1678)
+..+++.+.+.++. .+|.- |...++.++...|+-++ .+=+.+++.+|.-...+...
T Consensus 9 ~l~lY~~~s~~i~~~v~~~G~~~~~~~~~~~lr~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r 88 (319)
T PF08767_consen 9 MLNLYRAYSQIISQAVAESGEIATKTPKVRLLRTIKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAR 88 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHH-GGGGGSHHHHHHHHHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS
T ss_pred HHHHHHHHHHHHHHHHHhcCchhhccHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q ss_pred --HHHHHHHHHHHHhhhhhHHHHHHHHHHhhc--------CCCCCCCCcchHHHHHHHHHhhCchhhh--------hhhh
Q 000315 204 --TARRLAMNVIEQCAGKLEAGIKQFLVSSMS--------GDSRPGHSHIDYHEVIYDVYRCSPQILS--------GVVP 265 (1678)
Q Consensus 204 --~a~~LA~~vi~~~~dkL~~~I~q~f~~il~--------~d~~~~~~~~~~h~Li~eL~~~~P~lL~--------~ViP 265 (1678)
..-.+...||++-.+.+.+.+.+.+..+.. +...-.+-....+.++..+.+.||..|. .++-
T Consensus 89 ~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~id 168 (319)
T PF08767_consen 89 EPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVID 168 (319)
T ss_dssp -HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHH
Q ss_pred hhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhh
Q 000315 266 YLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRL 312 (1678)
Q Consensus 266 ~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~ 312 (1678)
.+..-+++.+.++-..+.+.+..|+. ++....++.-++|...+
T Consensus 169 si~wg~kh~~~~I~~~~L~~l~~ll~----~~~~~~~~~~~~F~~~y 211 (319)
T PF08767_consen 169 SIVWGFKHTNREISETGLNILLELLN----NVSKTNPEFANQFYQQY 211 (319)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHHHHH----HHHH-SHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHH----HHHhcCHHHHHHHHHHH
No 202
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=23.93 E-value=1.5e+03 Score=28.26 Aligned_cols=88 Identities=14% Similarity=0.206 Sum_probs=57.8
Q ss_pred hhcccccCCChHHHHHHHHHHHHhhcCCC-CCchhhc---HHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCC-Ch
Q 000315 266 YLTGELLTDQLDTRLKAVGLVGDLFAVPG-SANNEQF---HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRA-DA 340 (1678)
Q Consensus 266 ~Le~EL~sed~~~Rl~At~llG~mfs~~~-s~~a~~y---~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~~~p~~~-~~ 340 (1678)
....-|.++|=-+|..++++||+++..+. .+++..| |+-....+.=..|++..||.+...-- .+..+||... .+
T Consensus 213 ~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvF-KvFVANp~K~~~I 291 (335)
T PF08569_consen 213 KYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVF-KVFVANPNKPPPI 291 (335)
T ss_dssp HHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHH-HHHHH-SS-BHHH
T ss_pred HHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHH-HHHHhCCCCChHH
Confidence 34445778999999999999999999864 2334444 88888889999999999999986554 4555677532 11
Q ss_pred --------HHHHHHHHhhhCCC
Q 000315 341 --------PQILTALCDRLLDF 354 (1678)
Q Consensus 341 --------~eii~~L~~rL~D~ 354 (1678)
.-++..|.+-..|.
T Consensus 292 ~~iL~~Nr~kLl~fl~~f~~~~ 313 (335)
T PF08569_consen 292 VDILIKNREKLLRFLKDFHTDR 313 (335)
T ss_dssp HHHHHHTHHHHHHHHHTTTTT-
T ss_pred HHHHHHHHHHHHHHHHhCCCCC
Confidence 13345555556666
No 203
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.54 E-value=3.6e+02 Score=36.77 Aligned_cols=90 Identities=19% Similarity=0.281 Sum_probs=71.8
Q ss_pred hHHHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHH
Q 000315 244 DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSV 323 (1678)
Q Consensus 244 ~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~D~s~~VR~~~ 323 (1678)
+.-..|-+.+--.++.+.-|+..+|+ .|-.+|+-|++++.-+++..+.
T Consensus 108 d~g~~iae~fik~qd~I~lll~~~e~----~DF~VR~~aIqLlsalls~r~~---------------------------- 155 (970)
T KOG0946|consen 108 DLGLWIAEQFIKNQDNITLLLQSLEE----FDFHVRLYAIQLLSALLSCRPT---------------------------- 155 (970)
T ss_pred HHHHHHHHHHHcCchhHHHHHHHHHh----hchhhhhHHHHHHHHHHhcCCH----------------------------
Confidence 45667888888889999999988887 8999999999999999887551
Q ss_pred HHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh
Q 000315 324 LEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA 373 (1678)
Q Consensus 324 ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~ 373 (1678)
.+.++|+.+|. =+..|.+-|.|..|-||-+++-.+|++...+
T Consensus 156 --e~q~~ll~~P~------gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n 197 (970)
T KOG0946|consen 156 --ELQDALLVSPM------GISKLMDLLRDSREPIRNEAILLLSELVKDN 197 (970)
T ss_pred --HHHHHHHHCch------hHHHHHHHHhhhhhhhchhHHHHHHHHHccC
Confidence 23466777774 3456778899999999999999988876544
No 204
>PF08605 Rad9_Rad53_bind: Fungal Rad9-like Rad53-binding; InterPro: IPR013914 In Saccharomyces cerevisiae (Baker s yeast), the Rad9 is a key adaptor protein in DNA damage checkpoint pathways. DNA damage induces Rad9 phosphorylation, and Rad53 specifically associates with this region of Rad9, when phosphorylated, via the Rad53 IPR000253 from INTERPRO domain []. There is no clear higher eukaryotic ortholog to Rad9.
Probab=23.52 E-value=1.4e+02 Score=32.19 Aligned_cols=49 Identities=16% Similarity=0.258 Sum_probs=41.6
Q ss_pred CCceEEEEEEeecCCCCeeEEEccCCcceeeecCcccEEEecCCCCCCcccc
Q 000315 1391 DKQFYEGTIKSYDPIKKKHVILYDDEDVEVLRLDKERWELLDNGRKPTKKSK 1442 (1678)
Q Consensus 1391 D~~~Y~G~V~~y~~~~~~H~v~YdDgd~E~l~L~~e~~~~~~~~~~~~~~~~ 1442 (1678)
+..||.|++.+.+....+..|+++||. ..+.++.++.++-...+..+-+
T Consensus 21 ~~~yYPa~~~~~~~~~~~~~V~Fedg~---~~i~~~dv~~LDlRIGD~Vkv~ 69 (131)
T PF08605_consen 21 NLKYYPATCVGSGVDRDRSLVRFEDGT---YEIKNEDVKYLDLRIGDTVKVD 69 (131)
T ss_pred CCeEeeEEEEeecCCCCeEEEEEecCc---eEeCcccEeeeeeecCCEEEEC
Confidence 788999999999888878999999999 5566677888888888877666
No 205
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=23.12 E-value=9.4e+02 Score=28.73 Aligned_cols=100 Identities=18% Similarity=0.110 Sum_probs=63.6
Q ss_pred hHHHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCC---CchhhcHHHHHHHHhhhcCCChhHH
Q 000315 244 DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGS---ANNEQFHSVFSEFLKRLTDRIVAVR 320 (1678)
Q Consensus 244 ~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~s---~~a~~y~~~w~~fL~R~~D~s~~VR 320 (1678)
+.+.+++.+..-.++.|...|-. ..-++=+|..|...|+.+...... ...+-|+.+++.++.| .++.
T Consensus 100 ~l~~ilasv~~G~~~~L~~li~~-----~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~----~~~~- 169 (249)
T PF06685_consen 100 DLPRILASVGDGDIEPLKELIED-----PDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLER----NPSF- 169 (249)
T ss_pred HHHHHHHHHhCCCHHHHHHHHhC-----CcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcc----CchH-
Confidence 46778887777777777775421 123577999999999988876421 2455556666666654 4444
Q ss_pred HHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCCh
Q 000315 321 MSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFD 355 (1678)
Q Consensus 321 ~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~D 355 (1678)
.|-..+..|+--+|. +...+|-+++..-|+|+.
T Consensus 170 -~~~~Lv~~~~dL~~~-EL~~~I~~~f~~~lVd~~ 202 (249)
T PF06685_consen 170 -LWGSLVADICDLYPE-ELLPEIRKAFEDGLVDPS 202 (249)
T ss_pred -HHHHHHHHHHhcCHH-HhHHHHHHHHHcCCCCcc
Confidence 666666666555553 234556666776777764
No 206
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=23.08 E-value=6e+02 Score=27.68 Aligned_cols=74 Identities=18% Similarity=0.129 Sum_probs=55.3
Q ss_pred CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh-----cCCCCHHHHHHHHHhhcc-CChhHHHHHHHHHHHHHHHH
Q 000315 338 ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-----LNSIPVETVKLVAERLRD-KSVLVKRYTMERLADIFRGC 411 (1678)
Q Consensus 338 ~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~-----l~~V~~elL~~LaeR~RD-KK~~VR~eAm~~La~LY~~~ 411 (1678)
....+.+.+|.+||...+.+|=+.|+..+-.+.... ....+.+++..|...+.+ -...||..++..+-.....+
T Consensus 33 ~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 33 NGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence 346799999999999999999999988887776532 234466777777666666 46789998888776644443
No 207
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=23.01 E-value=2.3e+03 Score=30.31 Aligned_cols=342 Identities=18% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHhhcCCCCCCChhH-HHHHHHHHHHhccCCCCCC--CCChhhHHHHHHHHHhhhhhhhcccC------------C-
Q 000315 80 ICEITRITAPEAPYSDDV-LKDIFQLIVGTFSGLKDTG--GPSFGRRVVILETLAKYRSCVVMLDL------------E- 143 (1678)
Q Consensus 80 LadIlRI~APdaPytd~q-LkdIF~l~v~qf~~L~d~~--~p~f~~~~~lLe~lA~vks~vl~~DL------------~- 143 (1678)
|++|+--+--..-|.+.. +.-||+.++++...|.+.+ ...-.+||.|+|++|.-|-=--++.| |
T Consensus 346 il~i~S~~vS~~~Y~~~~~l~~iFh~~~~~ve~L~~qn~~~g~~er~~~lier~ad~rpe~sVlnli~Yr~~~V~A~R~g 425 (1697)
T KOG3687|consen 346 LLNIISRLLSQLQYLDSPELRTIFHDLLTTVEELCDQNEFHGSQERYFELVERCADQRPESSVLNLISYRAQSVHAARDG 425 (1697)
T ss_pred HHHHHHHHHHHhhhhcchhhhhHHHhhhhHHHHHHhhhhhcchHHHHHHHHHHhhhcCchHHHHHHHHHhhhccCcCCch
Q ss_pred chHHHHHHHHHHHHhhcCCC----hhhHHHHHHHHHHHHhcccccccHHHHHHHHHHhcCCCcH----HHHHHHHHHHHH
Q 000315 144 CDELVNEMYSTFFAVASDDH----PESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKND----TARRLAMNVIEQ 215 (1678)
Q Consensus 144 ~~~Li~~lF~~ff~~v~~~~----~~~V~~~m~~IL~~vI~Ese~vp~~lLd~IL~~l~~~k~~----~a~~LA~~vi~~ 215 (1678)
.-.++..+..-||.-.+... .-.+...+..+-.+..+| .|-..|+-..|+++.-++.. .++++-.++...
T Consensus 426 wiq~l~~lm~r~~r~~s~~~Vrik~~~~l~~~~l~nr~~yee--EIL~~VvL~~lshi~L~~~~qvr~l~~~~l~N~a~~ 503 (1697)
T KOG3687|consen 426 WIQNLQALMERFFRSESRGAVRIKVLDVLSFVLLINRQFYEE--EILNSVVLSQLSHIPLDKDHQVRKLATQLLVNLAEG 503 (1697)
T ss_pred HHHHHHHHHHHHHHhcccceEEEeeHHHHHHHHhhhhhhhHH--HhhhheeeEeeccccccchhHHHHHHHHHHHHHHhh
Q ss_pred hhhh----hHHHHHHHHHHhhcCCCCCCC-----------------------CcchHHHH--HHHHHhhCchhhhhhhhh
Q 000315 216 CAGK----LEAGIKQFLVSSMSGDSRPGH-----------------------SHIDYHEV--IYDVYRCSPQILSGVVPY 266 (1678)
Q Consensus 216 ~~dk----L~~~I~q~f~~il~~d~~~~~-----------------------~~~~~h~L--i~eL~~~~P~lL~~ViP~ 266 (1678)
|..+ +-..+-.+.+-.+.+.+.... ..++.|.| +..+--+---+..-++|+
T Consensus 504 C~t~~~~~lldi~EA~~~rs~s~~~~l~e~~~~~~~a~~~dI~~aVlgll~~~A~kl~~lP~~ha~~v~~~l~~h~~Lhy 583 (1697)
T KOG3687|consen 504 CHTHHFNSLLDIIEAVMARSLSPPPELEERDVAAYSASLEDIKTAVLGLLVILATKLYTLPASHATRVYEMLVSHIQLHY 583 (1697)
T ss_pred cchhcchhHHHHHHHHHhcccCCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhc
Q ss_pred hcccccCCChHHHHHHHHHHHHhhcCCCCCc-----------------------------hhhcHHHHHHHHhhhc-CCC
Q 000315 267 LTGELLTDQLDTRLKAVGLVGDLFAVPGSAN-----------------------------NEQFHSVFSEFLKRLT-DRI 316 (1678)
Q Consensus 267 Le~EL~sed~~~Rl~At~llG~mfs~~~s~~-----------------------------a~~y~~~w~~fL~R~~-D~s 316 (1678)
...+..----.+|.+|-..+-.+=+...-.+ +..|.-+|+-.+.... |.+
T Consensus 584 ~~PKI~~~~s~ir~~~f~~l~llRa~~~Y~lg~Pcn~~~Vv~fspyLGId~pl~p~~~p~~i~~~~~~~~~~qCl~~~~D 663 (1697)
T KOG3687|consen 584 KHPKILPIASSIRLQAFDFLFLLRADSLYRLGLPCNKDGVVRFSPYLGIDGPLSPPTGPPVVPYSLLFRVLLQCLKQESD 663 (1697)
T ss_pred cCccccchhhHHHHHHHHHHHHHhhcccceecccCCCccEEEeeeeeeecCCCCCCCCCCcccHHHHHHHHHHHhccccc
Q ss_pred hhHHHHHHHHhHHHHhcC--CCCCChHHHHHHHHhhh----------CCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHH
Q 000315 317 VAVRMSVLEHVKSCLLTD--PSRADAPQILTALCDRL----------LDFDENVRKQVVAVICDVACHALNSIPVETVKL 384 (1678)
Q Consensus 317 ~~VR~~~ve~~~~iL~~~--p~~~~~~eii~~L~~rL----------~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~ 384 (1678)
-.||..++...+..|..- -....+.++..+|+..+ .|.++-+=.-|+.++.-+-..--.---.+++.+
T Consensus 664 ~~v~~Lv~~~lp~~l~~k~l~~~~~i~~l~~~Lcs~~~l~~~~e~fs~~~~h~~V~Pv~~~L~~yh~~lQ~~~~~~~I~~ 743 (1697)
T KOG3687|consen 664 WKVLKLVLGRLPESLRYKVLIFTSSVDQLCSALCSMLRLRGAPEGFSRTDLHLAVVPVLTALISYHNYLQKTKQREMIYC 743 (1697)
T ss_pred HHHHHHHHHHhHHHHhHHHHhcCCcHHHHHHHHHHHHhccCCcccCCccccceeehHHHHHHHHHHHhcCCcchhhHHHH
Q ss_pred HHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCcchhccccchHHHhhh
Q 000315 385 VAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRC 435 (1678)
Q Consensus 385 LaeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~~wIPs~IL~~ 435 (1678)
+-.|+--.-.+|=..+|..+.-.--.++ +...|+.+++.
T Consensus 744 l~q~li~~~aSVcv~~lsi~~Lemp~~~------------~~~LpD~v~Q~ 782 (1697)
T KOG3687|consen 744 LEQGLIHRCASVCVVALSICSLEMPDII------------IKALPDLVVQL 782 (1697)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhhHHHH------------HHHhhHHHHHH
No 208
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=22.43 E-value=3.3e+02 Score=30.24 Aligned_cols=76 Identities=16% Similarity=0.104 Sum_probs=44.7
Q ss_pred hhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhH
Q 000315 317 VAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLV 396 (1678)
Q Consensus 317 ~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~V 396 (1678)
-..|..|+-.+..+.. ......+++.+...+.|.+.-||.++--++.+++.. -|..++..+.....+.....
T Consensus 120 ~~rR~~~~~~~~~~~~----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~----~~~~v~~~l~~~~~~~~~~t 191 (197)
T cd06561 120 WVRRAAIVLLLRLIKK----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK----DPERVIAFLEKNGLSMPRLT 191 (197)
T ss_pred HHHHHHHHHHHHHHHh----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh----CHHHHHHHHHHHHHhCChHH
Confidence 3445556666554443 112446677777777778888888887777777766 34455555544444444444
Q ss_pred HHHH
Q 000315 397 KRYT 400 (1678)
Q Consensus 397 R~eA 400 (1678)
.++|
T Consensus 192 ~r~a 195 (197)
T cd06561 192 LRYA 195 (197)
T ss_pred HHHH
Confidence 4444
No 209
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=22.13 E-value=8.6e+02 Score=28.01 Aligned_cols=103 Identities=13% Similarity=0.093 Sum_probs=68.1
Q ss_pred hhHHhHHHHHHHhcchhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCChhH-------HHHHHHHHHHhccCCCCCCCCC
Q 000315 47 SILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDV-------LKDIFQLIVGTFSGLKDTGGPS 119 (1678)
Q Consensus 47 ~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~APdaPytd~q-------LkdIF~l~v~qf~~L~d~~~p~ 119 (1678)
.|-...+.++..|+...+=.+....-.+++++||+-|--==.+|.-|+.+. --.||..|-+-+.-.
T Consensus 30 ~dFr~~rdi~e~ll~~~~~~~a~~~k~l~i~QfLsRI~eG~~LD~~Fd~~~~~TPLESAl~v~~~I~~E~~~~------- 102 (200)
T cd00280 30 EDFRRTRDIAEALLVGPLKLTATQLKTLRIMQFLSRIAEGKNLDCQFENDEELTPLESALMVLESIEKEFSLP------- 102 (200)
T ss_pred HHHHHHHHHHHHHHhccccccccchhHhHHHHHHHHHHcCCCCCCccCCCCCcChHHHHHHHHHHHHHhcCCc-------
Confidence 456677888888888777777777788999999875555456899997543 346677666655411
Q ss_pred hhhHHHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHH
Q 000315 120 FGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFA 157 (1678)
Q Consensus 120 f~~~~~lLe~lA~vks~vl~~DL~~~~Li~~lF~~ff~ 157 (1678)
..-+..++.+-.+...++|..-.--+.-.++|+.+|.
T Consensus 103 -~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 103 -ETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 1234455556666666666554344666777777776
No 210
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=21.03 E-value=1.8e+03 Score=28.35 Aligned_cols=105 Identities=22% Similarity=0.253 Sum_probs=57.3
Q ss_pred hhhcCCCcc-hHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhcc--------CCCCCCCCChhh-HHHHHHHHHh
Q 000315 63 VLLKHQDKD-VKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFS--------GLKDTGGPSFGR-RVVILETLAK 132 (1678)
Q Consensus 63 ~LL~HkD~~-Vr~~vAcCLadIlRI~APdaPytd~qLkdIF~l~v~qf~--------~L~d~~~p~f~~-~~~lLe~lA~ 132 (1678)
.||.|.+++ +..||-.-|.|+|+= +..--++|+.+...+. +|-+-+++++.. -++||.-++.
T Consensus 72 ~LlS~~~kdd~v~yvL~li~DmLs~--------d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~ 143 (442)
T KOG2759|consen 72 NLLSHIDKDDTVQYVLTLIDDMLSE--------DRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLAC 143 (442)
T ss_pred HHhchhhhHHHHHHHHHHHHHHHhh--------CchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 356666654 666777778999972 2222333333322222 222235555444 7888888887
Q ss_pred hhhhhhcccCCchHHHHHHHHHHHHhhc-CCChhhHHHHHHHHHHHHhcc
Q 000315 133 YRSCVVMLDLECDELVNEMYSTFFAVAS-DDHPESVLSSMQTIMIVLLEE 181 (1678)
Q Consensus 133 vks~vl~~DL~~~~Li~~lF~~ff~~v~-~~~~~~V~~~m~~IL~~vI~E 181 (1678)
.-.|.+-.+ ...+|..++.-.. ..++..-...+..+|..++-.
T Consensus 144 ~g~~~~~~~------e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~ 187 (442)
T KOG2759|consen 144 FGNCKMELS------ELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV 187 (442)
T ss_pred hccccccch------HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC
Confidence 777765331 1233333333322 246666666777777776654
No 211
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=20.47 E-value=5.9e+02 Score=27.29 Aligned_cols=81 Identities=17% Similarity=0.194 Sum_probs=58.2
Q ss_pred HHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh-----cCCCCHHHHHHHHHhhccCChh----HHHH
Q 000315 329 SCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-----LNSIPVETVKLVAERLRDKSVL----VKRY 399 (1678)
Q Consensus 329 ~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~-----l~~V~~elL~~LaeR~RDKK~~----VR~e 399 (1678)
+.+..++ ..+.+.+.+|.+||...+.+|-+-|+..+-.+.... ....+.+++..|...+.++... ||+.
T Consensus 31 D~i~~~~--~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k 108 (140)
T PF00790_consen 31 DLINSSP--DGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEK 108 (140)
T ss_dssp HHHHTST--THHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHH
T ss_pred HHHHcCC--ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHH
Confidence 4444443 346799999999999999999999988887776533 2234667888888888887754 7777
Q ss_pred HHHHHHHHHHHHh
Q 000315 400 TMERLADIFRGCC 412 (1678)
Q Consensus 400 Am~~La~LY~~~~ 412 (1678)
++..|.. |...+
T Consensus 109 ~l~ll~~-W~~~f 120 (140)
T PF00790_consen 109 ILELLQE-WAEAF 120 (140)
T ss_dssp HHHHHHH-HHHHT
T ss_pred HHHHHHH-HHHHH
Confidence 7766654 44443
No 212
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=20.41 E-value=3.5e+02 Score=30.54 Aligned_cols=111 Identities=24% Similarity=0.344 Sum_probs=54.7
Q ss_pred cchHHHHHHHHHHHHhhcCCCCCC--ChhHHHHHHHHHHHhccCC-CCCCCCChhhHHHHHHHHHhhhhhhhcccCCchH
Q 000315 70 KDVKLLVATCICEITRITAPEAPY--SDDVLKDIFQLIVGTFSGL-KDTGGPSFGRRVVILETLAKYRSCVVMLDLECDE 146 (1678)
Q Consensus 70 ~~Vr~~vAcCLadIlRI~APdaPy--td~qLkdIF~l~v~qf~~L-~d~~~p~f~~~~~lLe~lA~vks~vl~~DL~~~~ 146 (1678)
.-||..++-||..|+.-..|..|+ ..++|.+||..--.. .+ ......+|.+-+-||. + +.
T Consensus 21 DrvR~~A~~~l~~ll~~~~~~~~~ip~~~~L~~i~~~~~~~--~~~w~~~~~~F~~l~~LL~-------------~--~~ 83 (193)
T PF12612_consen 21 DRVREVAGKCLQRLLHSQDPTIPHIPHREELQDIFPSESEA--SLNWSSSSEYFPRLVKLLD-------------L--PE 83 (193)
T ss_pred HHHHHHHHHHHHHHhcCCCccccCCCcHHHHHHHccccccc--ccccCCHHHHHHHHHHHhc-------------c--HH
Confidence 349999999999999544343333 336788777533221 11 1112234444443322 1 13
Q ss_pred HHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhc---ccccccHHHHHHHHHHhc
Q 000315 147 LVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLE---ESEDIQEDLLVILLSALG 198 (1678)
Q Consensus 147 Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~---Ese~vp~~lLd~IL~~l~ 198 (1678)
.-..++..+.--+ ++..+.+......-|...+. +.......++..|+..+.
T Consensus 84 y~~~ll~Glv~S~-G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il~ 137 (193)
T PF12612_consen 84 YRYSLLSGLVVSA-GGLTESLVRASSAALLSYLRELSDSPEELEQVLSDLLSILK 137 (193)
T ss_pred HHHHHHhHHHhcC-CCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 3334444444333 33444555555555555553 333444555555555553
No 213
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=20.31 E-value=1.8e+03 Score=27.95 Aligned_cols=75 Identities=17% Similarity=0.205 Sum_probs=49.3
Q ss_pred hhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhh-CCChhHHHHHHHHHHHHhhh---hhcCCCCHHHHHHHHHhhcc
Q 000315 317 VAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRL-LDFDENVRKQVVAVICDVAC---HALNSIPVETVKLVAERLRD 391 (1678)
Q Consensus 317 ~~VR~~~ve~~~~iL~~~p~~~~~~eii~~L~~rL-~D~DEkVR~aaV~ai~~la~---~~l~~V~~elL~~LaeR~RD 391 (1678)
+.+|....++...++...+..+...++++.+...+ ...+..-|..++..+.-+.+ ...+....+++..+.+-+.|
T Consensus 204 ~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~ 282 (415)
T PF12460_consen 204 EFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS 282 (415)
T ss_pred hHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC
Confidence 88999999998876665555555567777777777 67788888888888755554 22223333444555555555
No 214
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=20.10 E-value=6.8e+02 Score=26.69 Aligned_cols=75 Identities=12% Similarity=0.107 Sum_probs=55.1
Q ss_pred CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh---c--CCCCHHHHHHHHHhhccCCh-h-HHHHHHHHHHHHHHH
Q 000315 338 ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA---L--NSIPVETVKLVAERLRDKSV-L-VKRYTMERLADIFRG 410 (1678)
Q Consensus 338 ~~~~eii~~L~~rL~D~DEkVR~aaV~ai~~la~~~---l--~~V~~elL~~LaeR~RDKK~-~-VR~eAm~~La~LY~~ 410 (1678)
....+.+.+|.+||...+..|=+.|+..+-.+.... | ...+.+++..|...+.++.. . ||+.++..+..-+..
T Consensus 33 ~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 33 DGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 346799999999999999999999988887776532 2 23355677777766666654 2 888888877776665
Q ss_pred Hh
Q 000315 411 CC 412 (1678)
Q Consensus 411 ~~ 412 (1678)
+.
T Consensus 113 f~ 114 (133)
T smart00288 113 FK 114 (133)
T ss_pred Hc
Confidence 53
Done!