Query 000315
Match_columns 1678
No_of_seqs 275 out of 462
Neff 5.7
Searched_HMMs 29240
Date Tue Mar 26 17:16:15 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000315.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_93-97//hhsearch_pdb/000315hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b3u_A Protein (protein phosph 1.0 1 1 93.0 33.8 288 64-409 18-310 (588)
2 4fdd_A Transportin-1; heat rep 1.0 1 1 86.3 52.7 30 743-772 650-679 (852)
3 4fdd_A Transportin-1; heat rep 1.0 1 1 82.3 56.8 162 246-407 111-283 (852)
4 2bpt_A Importin beta-1 subunit 1.0 1 1 80.6 52.6 679 68-865 53-813 (861)
5 1qgr_A Protein (importin beta 1.0 1 1 80.4 54.6 299 68-408 49-394 (876)
6 1b3u_A Protein (protein phosph 1.0 1 1 80.2 32.9 66 343-408 165-231 (588)
7 1u6g_C TIP120 protein, CAND1; 1.0 1 1 76.1 69.8 47 850-901 947-994 (1230)
8 1u6g_C TIP120 protein, CAND1; 1.0 1 1 74.8 59.7 232 64-312 56-305 (1230)
9 2bpt_A Importin beta-1 subunit 1.0 1 1 73.5 53.5 148 262-409 134-295 (861)
10 2vgl_B AP-2 complex subunit be 1.0 1 1 68.9 34.4 494 264-891 15-522 (591)
No 1
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=92.96 Aligned_cols=288 Identities=14% Similarity=0.130 Sum_probs=114.2
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 10589821278889998778751299999991589999999998216998889987146999999998432531101698
Q 000315 64 LLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLE 143 (1678)
Q Consensus 64 LL~HkD~~Vr~~vAcCLadIlRI~APdAPytd~~LkdIF~lfi~ql~~L~d~~~p~f~q~~~LLE~LA~vks~vl~~DL~ 143 (1678)
.|+|.|..+|..++-+|..+.+..-| +....++..++.... |. ++ .-+..+.+.|..+-. .+.
T Consensus 18 ~l~s~~~~~R~~A~~~l~~i~~~~~~-----~~~~~~l~~~L~~~~----d~-~~--~vr~~~~~~L~~~~~-----~~~ 80 (588)
T 1b3u_A 18 ELRNEDVQLRLNSIKKLSTIALALGV-----ERTRSELLPFLTDTI----YD-ED--EVLLALAEQLGTFTT-----LVG 80 (588)
T ss_dssp HTTCSCHHHHHHHHHTHHHHHHHSCH-----HHHHHTHHHHHHHTC----CC-CH--HHHHHHHHHHTTCSG-----GGT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHCH-----HHHHHHHHHHHHHHC----CC-CH--HHHHHHHHHHHHHHH-----CCC
T ss_conf 85062199999999719999998697-----989998998898755----78-58--999999999977876-----058
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHH-H---HHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 4289999999999742499825199999999999960244564889-9---99999713798578999999999995554
Q 000315 144 CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDL-L---VILLSALGRNKNDTARRLAMNVIEQCAGK 219 (1678)
Q Consensus 144 ~~~Li~~lF~~ff~iv~~~~~~~V~~~m~~IL~~iI~Ese~ip~~v-L---d~IL~~l~~~k~~~A~~LA~~ii~~~~dk 219 (1678)
..+....++..+..... +....|.......|..+.... +.+. . -.++..+........+..|..++......
T Consensus 81 ~~~~~~~ll~~L~~l~~-~~~~~vR~~a~~~L~~l~~~~---~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~ 156 (588)
T 1b3u_A 81 GPEYVHCLLPPLESLAT-VEETVVRDKAVESLRAISHEH---SPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPR 156 (588)
T ss_dssp SGGGGGGGHHHHHHHTT-SSCHHHHHHHHHHHHHHHTTS---CHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 59899998999999874-760799999999999999979---99999999999999985077717999999999999985
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 47999999998305999998874037799999984073034311211201235777689999999999862599998210
Q 000315 220 LEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE 299 (1678)
Q Consensus 220 L~~~I~q~f~~~l~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~ 299 (1678)
+. +.....++|.|..-+..++..+|..|.+.+|.+...-+.. .
T Consensus 157 ~~-----------------------------------~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~ 199 (588)
T 1b3u_A 157 VS-----------------------------------SAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--N 199 (588)
T ss_dssp SC-----------------------------------HHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--H
T ss_pred CC-----------------------------------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHH--H
T ss_conf 69-----------------------------------9999999999999848997889999999899999981677--6
Q ss_pred HCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-CCCCC
Q ss_conf 04999999983005999339999999969988319999986789999986607971679999999999965321-37889
Q 000315 300 QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-LNSIP 378 (1678)
Q Consensus 300 ~y~~~w~~fL~R~~Dks~~VR~~~V~~~~~iL~s~p~~~~~~eI~~~L~~rL~D~DEkVR~aaVkai~~la~~~-l~~V~ 378 (1678)
..+.+...++.-.+|.++.||...+++...+....+.......+++.+...+.|.+++||.+++.+++.++... ...+.
T Consensus 200 ~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~ 279 (588)
T 1b3u_A 200 VKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK 279 (588)
T ss_dssp HHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 79999999998824992889998999999999857988888789999999806997789999999999999981952105
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 8889999976036893699999999999999
Q 000315 379 VETVKLVAERLRDKSVLVKRYTMERLADIFR 409 (1678)
Q Consensus 379 ~elL~~laeR~RDKK~~VRkeAi~~La~LY~ 409 (1678)
..++..+...+.|..+.||..|...|+.+..
T Consensus 280 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 310 (588)
T 1b3u_A 280 TDLVPAFQNLMKDCEAEVRAAASHKVKEFCE 310 (588)
T ss_dssp HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 5899999998589958999999987999999
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=86.31 Aligned_cols=30 Identities=7% Similarity=0.214 Sum_probs=13.2
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 899999993314331450578999999835
Q 000315 743 LQSLGCIAQTAMPVFETRESEIEEFIKSKI 772 (1678)
Q Consensus 743 L~sLa~Iaq~ap~vfe~~~~eI~~fIik~I 772 (1678)
...|+.|++..+..|......|..++++.+
T Consensus 650 ~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l 679 (852)
T 4fdd_A 650 FALLGDLTKACFQHVKPCIADFMPILGTNL 679 (852)
T ss_dssp HHHHHHHHHHCGGGTGGGHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999816888987999999999876
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=82.27 Aligned_cols=162 Identities=14% Similarity=0.151 Sum_probs=92.0
Q ss_pred HHHHHHHHHHC-CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHH-----HCHHHHHHHHHHHCCCCHHH
Q ss_conf 79999998407-3034311211201235777689999999999862599998210-----04999999983005999339
Q 000315 246 HEVIYDVYRCS-PQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE-----QFHSVFSEFLKRLTDRIVAV 319 (1678)
Q Consensus 246 h~Li~eL~~~~-P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~-----~y~~~w~~fL~R~~Dks~~V 319 (1678)
-.++..|.+.. |.-....+|.|..-+.+.+..+|..|..+++.++...+..+.. ....++..++.-+.|.++.|
T Consensus 111 a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~v 190 (852)
T 4fdd_A 111 GILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKI 190 (852)
T ss_dssp HHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHHHHCCCCHHH
T ss_conf 99999999864813568999999998709998999999999999999857875634313329999999999856797899
Q ss_pred HHHHHHHHHHHHHCCCC--CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHHHHCCCCH
Q ss_conf 99999996998831999--99867899999866079716799999999999653213788---98889999976036893
Q 000315 320 RMSVLEHVKSCLLTDPS--RADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI---PVETVKLVAERLRDKSV 394 (1678)
Q Consensus 320 R~~~V~~~~~iL~s~p~--~~~~~eI~~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~V---~~elL~~laeR~RDKK~ 394 (1678)
|...+++...++...+. .....++++.|...+.|.|+.||.+++.+++.++......+ -..++..+...+.|...
T Consensus 191 R~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~ 270 (852)
T 4fdd_A 191 RSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDE 270 (852)
T ss_dssp HHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 99999999999864638799889999999998717997789999999999999857798998899999999987069968
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 6999999999999
Q 000315 395 LVKRYTMERLADI 407 (1678)
Q Consensus 395 ~VRkeAi~~La~L 407 (1678)
.||..|++.+..+
T Consensus 271 ~vr~~a~e~l~~l 283 (852)
T 4fdd_A 271 NVALEACEFWLTL 283 (852)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999998
No 4
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=80.58 Aligned_cols=679 Identities=12% Similarity=0.122 Sum_probs=301.0
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCC---------CC-CCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 98212788899987787512999---------99-991589999999998216998889987146999999998432531
Q 000315 68 QDKDVKLLVATCICEITRITAPE---------AP-YSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCV 137 (1678)
Q Consensus 68 kD~~Vr~~vAcCLadIlRI~APd---------AP-ytd~~LkdIF~lfi~ql~~L~d~~~p~f~q~~~LLE~LA~vks~v 137 (1678)
.+..||.++|..|-..++-+-+. .. .++++...|-..++..+. +++ +. . +..+-..++.+-
T Consensus 53 ~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~---~~~-~~-v-r~~~~~~l~~i~--- 123 (861)
T 2bpt_A 53 TKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALV---SIE-PR-I-ANAAAQLIAAIA--- 123 (861)
T ss_dssp SCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHT---CSS-HH-H-HHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC---CCC-HH-H-HHHHHHHHHHHH---
T ss_conf 98679999999987022575748789999767662999999999999999877---996-37-9-999999999999---
Q ss_pred HCCCCCC---HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC-------CCHHHHHHHHHHHCCCC-CHHHH
Q ss_conf 1016984---2899999999997424998251999999999999602445-------64889999999713798-57899
Q 000315 138 VMLDLEC---DELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESED-------IQEDLLVILLSALGRNK-NDTAR 206 (1678)
Q Consensus 138 l~~DL~~---~~Li~~lF~~ff~iv~~~~~~~V~~~m~~IL~~iI~Ese~-------ip~~vLd~IL~~l~~~k-~~~A~ 206 (1678)
..++|. .+++.. ++..+..+....+......++..+.++... .-..++..++..+.... +..-+
T Consensus 124 -~~~~p~~~w~~ll~~----L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr 198 (861)
T 2bpt_A 124 -DIELPHGAWPELMKI----MVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVR 198 (861)
T ss_dssp -HHHGGGTCCHHHHHH----HHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHH
T ss_pred -HHHCCCCCCHHHHHH----HHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf -846764554999999----999872689789999999999999972784356789889999999998415799987899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 99999999955544799999999830599999887403779999998407303431121120123577768999999999
Q 000315 207 RLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLV 286 (1678)
Q Consensus 207 ~LA~~ii~~~~dkL~~~I~q~f~~~l~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViPqLe~EL~sed~~~Rl~At~ll 286 (1678)
..|.+.+..+...+... +.. . .. | .. +++.|..-+.+++..+|..|.+.+
T Consensus 199 ~~al~~l~~~~~~~~~~--------~~~-------~-~~-------~----~~---ll~~l~~~~~~~~~~~r~~a~~~l 248 (861)
T 2bpt_A 199 LAALNALADSLIFIKNN--------MER-------E-GE-------R----NY---LMQVVCEATQAEDIEVQAAAFGCL 248 (861)
T ss_dssp HHHHHHHHHHGGGCHHH--------HTS-------H-HH-------H----HH---HHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--------CCC-------H-HH-------H----HH---HHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99999999999999987--------067-------6-68-------9----99---999999986599889999999999
Q ss_pred HHHHCCCCCCCHHHCH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC-------------CC--CC----CHHHHHHH
Q ss_conf 9862599998210049-99999983005999339999999969988319-------------99--99----86789999
Q 000315 287 GDLFAVPGSANNEQFH-SVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD-------------PS--RA----DAPQILTA 346 (1678)
Q Consensus 287 G~mfs~~~s~~a~~y~-~~w~~fL~R~~Dks~~VR~~~V~~~~~iL~s~-------------p~--~~----~~~eI~~~ 346 (1678)
+++....+..+....+ .+|..++....|.+..||...+++...+.... |. .. ....+++.
T Consensus 249 ~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 328 (861)
T 2bpt_A 249 CKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPN 328 (861)
T ss_dssp HHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999988999998899999999998737727899999999999998788643332103577325699999999889999
Q ss_pred HHHHHCCCH-------HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 986607971-------6799999999999653213788988899999760368936999999999999998731014998
Q 000315 347 LCDRLLDFD-------ENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGS 419 (1678)
Q Consensus 347 L~~rL~D~D-------EkVR~aaVkai~~la~~~l~~V~~elL~~laeR~RDKK~~VRkeAi~~La~LY~~~~~~~~~g~ 419 (1678)
+...+.+.| ..||.++..++..++......+-..++..+.+.+.|..+.+|..|+..|+.+-.. +.. .
T Consensus 329 ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~-~~~----~ 403 (861)
T 2bpt_A 329 LLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDG-PDK----V 403 (861)
T ss_dssp HHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS-SCH----H
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC-CCH----H
T ss_conf 99998706653012468689999999999998740868999999999875799726999999999999859-987----8
Q ss_pred CCHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHH-H--HHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 520001662588863320277884048998420686999997999999-9--9998129999999999999999999999
Q 000315 420 INQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRH-W--VRIFSGFDRIEMKALEKILEQKQRLQQE 496 (1678)
Q Consensus 420 ~~~~~~~wIP~~IL~~~Y~~d~~~~lVE~vl~e~LlP~~~~~~~R~~~-l--l~l~~~LD~~~~kal~~il~~k~~l~~~ 496 (1678)
.....+..|-..++..+. | .++.-|... | ..+...+... + .....+...
T Consensus 404 ~~~~~l~~il~~l~~~l~--d------------------~~~~vr~~a~~~l~~l~~~~~~~-------~-~~~~~~~~~ 455 (861)
T 2bpt_A 404 QRTYYVHQALPSILNLMN--D------------------QSLQVKETTAWCIGRIADSVAES-------I-DPQQHLPGV 455 (861)
T ss_dssp HHHHHHHHHHHHHHHGGG--C------------------SCHHHHHHHHHHHHHHHHHHGGG-------S-CTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHCC--C------------------CCHHHHHHHHHHHHHHHHHHHHH-------C-CCHHHHHHH
T ss_conf 889989999999998828--9------------------95999999999999999873540-------4-878889999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHCCHHHHHHHHHHHC-CC--CCHH-HHHH
Q ss_conf 999999986513899289999999999998752399--3578899999884100889999999736-79--9999-9999
Q 000315 497 MQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAE--PAKAEENFLILDQLKDANVWKILMNLLD-SN--TSFD-QAFT 570 (1678)
Q Consensus 497 ~~~~l~l~~~~~~~d~~ei~~kL~~~i~~Ls~~fPD--~~Ka~~~L~kf~klkD~Ri~klLk~~id-p~--td~k-tv~~ 570 (1678)
+..++... + +.+.+.......+..++..+++ +......+ ..++..|..+++ ++ ...+ .+..
T Consensus 456 l~~l~~~l---~--~~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--------~~il~~L~~~l~~~d~~~~vr~~a~~ 522 (861)
T 2bpt_A 456 VQACLIGL---Q--DHPKVATNCSWTIINLVEQLAEATPSPIYNFY--------PALVDGLIGAANRIDNEFNARASAFS 522 (861)
T ss_dssp HHHHHHHH---T--SCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--------HHHHHHHHHHHTCSCCGGGHHHHHHH
T ss_pred HHHHHHHH---C--CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH--------HHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 99999976---4--47289999999999999862313542468999--------99999999998575861589999999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC-------C----CCHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999558976599999999862002557668999999999610-------4----301465889999999998528
Q 000315 571 GRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQK-------S----SANAQFMQSCMDILGILARFS 639 (1678)
Q Consensus 571 a~keLlkkL~~~~~l~d~l~~Ll~R~S~lifNks~V~~LL~~v~~s~-------~----~~n~~~~~~a~eLL~~IS~~~ 639 (1678)
+...+....+.. ...++.. -++.++..+.... . +........+.+.|..+....
T Consensus 523 al~~l~~~~~~~--~~~~~~~-------------l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~ 587 (861)
T 2bpt_A 523 ALTTMVEYATDT--VAETSAS-------------ISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKS 587 (861)
T ss_dssp HHHHHHHHCCGG--GHHHHHH-------------HHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCHH--HHHHHHH-------------HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999976265--6999999-------------9999999999887532013885567779999999999999999985
Q ss_pred CCCCCCCHHHHHHH----HHHCCC-CCHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 95734449999999----751021-0046699999986020475320066228999998840599587999999999630
Q 000315 640 PLLLGGTEEELVNL----LKEENE-IIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAIT 714 (1678)
Q Consensus 640 P~lFk~~v~eLi~l----L~~~~~-~~~e~aLkiLak~~~~~~e~~~~~~s~l~~~L~~lal~GtpkqAKyAVr~Laai~ 714 (1678)
+.-+..+...+... +...+. .+.+.++..+........+.+.+.-..+.+.|........+.....|+.++..+.
T Consensus 588 ~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~ 667 (861)
T 2bpt_A 588 PSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADIS 667 (861)
T ss_dssp GGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 56347899999999999974678875799999999999999766099999999999998865566789999999999999
Q ss_pred CCCCCC---HHHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 787321---4999999999852105----998348899999993314331450578999999835135666678887877
Q 000315 715 KDDGLK---SLSVLYKRLVDMLEEK----THLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACW 787 (1678)
Q Consensus 715 ~~~~~~---~~~~L~~~L~~~L~~~----~~l~t~L~sLa~Iaq~ap~vfe~~~~eI~~fIik~ILl~~~~~~~~~~~~W 787 (1678)
..-+.. .+..++..+...+... .--.+.+.+||.|++..+..|......|...++.-+-..+ +. ++.++
T Consensus 668 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~---~~-~d~d~ 743 (861)
T 2bpt_A 668 NSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKP---EN-GTLEA 743 (861)
T ss_dssp HHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCC---SS-SSHHH
T ss_pred HHHCHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CC-CCHHH
T ss_conf 874540311199999999997278655676659999999999998405089999999999999973678---99-97588
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 78615678999999999995159876--6643205889999999540376666778996667675799999999853104
Q 000315 788 DDRSELCLLKIYGIKTLVKSYLPVKD--AHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQW 865 (1678)
Q Consensus 788 ~d~s~~~~aKi~aLK~Lvn~ll~~~~--~~~~~~i~~ll~lL~~il~~GEi~~~~~tp~~~ksrLRLaAa~alLKLAr~~ 865 (1678)
. ......+..+++++...+..... ....+.+..++.+|...+...+ ..+...+|.+|..++-.|++.+
T Consensus 744 ~--~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~--------~~~~~~vr~~a~~~l~~l~~~~ 813 (861)
T 2bpt_A 744 L--DYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQ--------LYSEDATSRAAVGLIGDIAAMF 813 (861)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHH--------HHTSHHHHHHHHHHHHHHHHHC
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC--------CCCCHHHHHHHHHHHHHHHHHC
T ss_conf 9--99999999999999999999826778899999999999999874855--------5786999999999999999882
No 5
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=80.44 Aligned_cols=299 Identities=10% Similarity=0.115 Sum_probs=136.5
Q ss_pred CCCCHHHHHHHHHHHHHHHCCC-------C--CCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9821278889998778751299-------9--999915899999999982169988899871469999999984325311
Q 000315 68 QDKDVKLLVATCICEITRITAP-------E--APYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVV 138 (1678)
Q Consensus 68 kD~~Vr~~vAcCLadIlRI~AP-------d--APytd~~LkdIF~lfi~ql~~L~d~~~p~f~q~~~LLE~LA~vks~vl 138 (1678)
.+..||.+.+.+|-..+....+ . ...+++....|-..++..+ .+++... .+...+|-.++..-.
T Consensus 49 ~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~~l---~~~~~~~-~~~~~~l~~i~~~~~--- 121 (876)
T 1qgr_A 49 NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTL---GTETYRP-SSASQCVAGIACAEI--- 121 (876)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHT---TTCCSSS-CHHHHHHHHHHHHHG---
T ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH---CCCCHHH-HHHHHHHHHHHHHHC---
T ss_conf 987999999999987605543476789986440699999999999999986---7994788-999999999998467---
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHCCCC-----CCCHHHHHHHHHHHCCCC-CHHHHHHHHH
Q ss_conf 0169842899999999997424998-25199999999999960244-----564889999999713798-5789999999
Q 000315 139 MLDLECDELVNEMYSTFFAVASDDH-PESVLSSMQTIMIVLLEESE-----DIQEDLLVILLSALGRNK-NDTARRLAMN 211 (1678)
Q Consensus 139 ~~DL~~~~Li~~lF~~ff~iv~~~~-~~~V~~~m~~IL~~iI~Ese-----~ip~~vLd~IL~~l~~~k-~~~A~~LA~~ 211 (1678)
. .-.-.+++..+++.+ .... ...+......++..+.++.. ..-..++..++..+.... +...+..|..
T Consensus 122 ~-~~~w~~ll~~l~~~l----~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~ 196 (876)
T 1qgr_A 122 P-VNQWPELIPQLVANV----TNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATN 196 (876)
T ss_dssp G-GTCCTTHHHHHHHHH----HCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHH
T ss_pred C-CCCCHHHHHHHHHHH----HCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 6-225688999999987----08898799999999999999874587667867999999999861679998899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 99995554479999999983059999988740377999999840730343112112012357776899999999998625
Q 000315 212 VIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFA 291 (1678)
Q Consensus 212 ii~~~~dkL~~~I~q~f~~~l~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs 291 (1678)
.+......+...+.. +.|+ ..+++.|..-+..++..+|..|.+.++.+..
T Consensus 197 ~l~~~~~~~~~~~~~------------------------~~~~------~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~ 246 (876)
T 1qgr_A 197 ALLNSLEFTKANFDK------------------------ESER------HFIMQVVCEATQCPDTRVRVAALQNLVKIMS 246 (876)
T ss_dssp HHHHHGGGCHHHHTS------------------------HHHH------HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH------------------------HHHH------HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 999999999998871------------------------7899------9999999987179988999999999999999
Q ss_pred CCCCCCHHHCH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC-------------------CCCCC----HHHHHHHH
Q ss_conf 99998210049-99999983005999339999999969988319-------------------99998----67899999
Q 000315 292 VPGSANNEQFH-SVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD-------------------PSRAD----APQILTAL 347 (1678)
Q Consensus 292 ~~~s~~a~~y~-~~w~~fL~R~~Dks~~VR~~~V~~~~~iL~s~-------------------p~~~~----~~eI~~~L 347 (1678)
..+..+....+ .++...+..+.|.+..||...+++...+.... +.... ..+++..+
T Consensus 247 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l 326 (876)
T 1qgr_A 247 LYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL 326 (876)
T ss_dssp HSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 86999998877899999999963873499999999999998878767665100112477754201899999898870799
Q ss_pred HHHHC-------CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 86607-------97167999999999996532137889888999997603689369999999999999
Q 000315 348 CDRLL-------DFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIF 408 (1678)
Q Consensus 348 ~~rL~-------D~DEkVR~aaVkai~~la~~~l~~V~~elL~~laeR~RDKK~~VRkeAi~~La~LY 408 (1678)
...|. |.+++||.+++.++..++......+-..++..+...+.|..+.||..|+..|+.+-
T Consensus 327 l~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~ 394 (876)
T 1qgr_A 327 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCIL 394 (876)
T ss_dssp HHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTS
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 98753133444545217999999999999987758669999999998846998289999999999997
No 6
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=80.22 Aligned_cols=66 Identities=14% Similarity=0.095 Sum_probs=22.6
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 999998660797167999999999996532137-889888999997603689369999999999999
Q 000315 343 ILTALCDRLLDFDENVRKQVVAVICDVACHALN-SIPVETVKLVAERLRDKSVLVKRYTMERLADIF 408 (1678)
Q Consensus 343 I~~~L~~rL~D~DEkVR~aaVkai~~la~~~l~-~V~~elL~~laeR~RDKK~~VRkeAi~~La~LY 408 (1678)
+++.+...+.|+|..||.+++.+++.++..... .....++..+...+.|..+.||..|+..|+.+.
T Consensus 165 l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~ 231 (588)
T 1b3u_A 165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIA 231 (588)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 9999999848997889999999899999981677679999999998824992889998999999999
No 7
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=76.11 Aligned_cols=47 Identities=15% Similarity=0.078 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 5799999999853104-887788999998312467726699999999998674
Q 000315 850 LRLASAKAVLRLSRQW-DHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVK 901 (1678)
Q Consensus 850 LRLaAa~alLKLAr~~-d~~I~~d~f~l~~l~~qD~~~~VR~~Fl~KL~kyL~ 901 (1678)
+|-.++.++=+|+... +.++| .+. ....|+...+|...+.-+...+.
T Consensus 947 ~r~~~a~~lg~l~~~~~~~l~p----~l~-~~l~~~~~~~R~~~~~~l~~~~~ 994 (1230)
T 1u6g_C 947 TRNVVAECLGKLTLIDPETLLP----RLK-GYLISGSSYARSSVVTAVKFTIS 994 (1230)
T ss_dssp HHHHHHHHHHHHHHSSGGGTHH----HHT-TTSSSSCHHHHHHHHHHTGGGCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHH----HHH-HHHCCCCHHHHHHHHHHHHHHHC
T ss_conf 6899998875665067688889----999-98569978899999999999970
No 8
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=74.81 Aligned_cols=232 Identities=14% Similarity=0.149 Sum_probs=111.1
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 10589821278889998778751299999991589999999998216998889987146999999998432531101698
Q 000315 64 LLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLE 143 (1678)
Q Consensus 64 LL~HkD~~Vr~~vAcCLadIlRI~APdAPytd~~LkdIF~lfi~ql~~L~d~~~p~f~q~~~LLE~LA~vks~vl~~DL~ 143 (1678)
.|.+++..||..++-||..+..-+.+ .++..|+..++..+ .|++.. . +......|+.+-.. +.-+
T Consensus 56 ~L~d~~~~vR~~A~~~L~~l~~~~~~------~~~~~i~~~Ll~~l---~d~~~~--v-R~~a~~~L~~i~~~---l~~~ 120 (1230)
T 1u6g_C 56 LLEDKNGEVQNLAVKCLGPLVSKVKE------YQVETIVDTLCTNM---LSDKEQ--L-RDISSIGLKTVIGE---LPPA 120 (1230)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHHHHT---TCSSSH--H-HHHHHHHHHHHHHH---CC--
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHH---CCCCHH--H-HHHHHHHHHHHHHH---CCCC
T ss_conf 86699989999999999999975879------89999999999986---698388--9-99999999999996---7974
Q ss_pred ------CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC-C---CHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf ------42899999999997424998251999999999999602445-6---4889999999713798578999999999
Q 000315 144 ------CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESED-I---QEDLLVILLSALGRNKNDTARRLAMNVI 213 (1678)
Q Consensus 144 ------~~~Li~~lF~~ff~iv~~~~~~~V~~~m~~IL~~iI~Ese~-i---p~~vLd~IL~~l~~~k~~~A~~LA~~ii 213 (1678)
......+++..++....++....+......++..+++.... + -..++..++..+... ....+.-|...+
T Consensus 121 ~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~-~~~vR~~a~~al 199 (1230)
T 1u6g_C 121 SSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSP-RLAVRKRTIIAL 199 (1230)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCS-SHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
T ss_conf 4444117889999999999987578846799999999999999827677887999999999987599-689999999999
Q ss_pred HHHHHHHH----HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHH----HHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 99555447----99999999830599999887403779999998407303----43112112012357776899999999
Q 000315 214 EQCAGKLE----AGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQI----LSGVVPYLTGELLTDQLDTRLKAVGL 285 (1678)
Q Consensus 214 ~~~~dkL~----~~I~q~f~~~l~~d~~~~~~~~~~h~Li~eL~~~~P~l----L~~ViPqLe~EL~sed~~~Rl~At~l 285 (1678)
...+..+. +.+-.++...+..+.. ......+-+.+..|.+..|.. +..++|.+-.-+..++..+|..|...
T Consensus 200 ~~l~~~~~~~~~~~~l~~l~~~L~~~~~-~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~ 278 (1230)
T 1u6g_C 200 GHLVMSCGNIVFVDLIEHLLSELSKNDS-MSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQA 278 (1230)
T ss_dssp HHHTTTC----CTTHHHHHHHHHHHTCS-SCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9999856899999999999998616775-568999999999999986898998899999999998668977899999999
Q ss_pred HHHHHCCCCCCCHHHCHHHHHHHHHHH
Q ss_conf 998625999982100499999998300
Q 000315 286 VGDLFAVPGSANNEQFHSVFSEFLKRL 312 (1678)
Q Consensus 286 lG~mfs~~~s~~a~~y~~~w~~fL~R~ 312 (1678)
++.+...-+..+..-.+.+...++...
T Consensus 279 l~~l~~~~~~~~~~~l~~li~~ll~~l 305 (1230)
T 1u6g_C 279 FESFVRRCPKEVYPHVSTIINICLKYL 305 (1230)
T ss_dssp HHHHHHCTTCCCHHHHHHHHHHHTTCC
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_conf 999999784877776899999999982
No 9
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=73.50 Aligned_cols=148 Identities=11% Similarity=0.170 Sum_probs=62.8
Q ss_pred HHHHHHCCCCCCC-CHHHHHHHHHHHHHHHCCCCCC---CHHHCHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHCC-
Q ss_conf 1121120123577-7689999999999862599998---2100499999998300599--9339999999969988319-
Q 000315 262 GVVPYLTGELLTD-QLDTRLKAVGLVGDLFAVPGSA---NNEQFHSVFSEFLKRLTDR--IVAVRMSVLEHVKSCLLTD- 334 (1678)
Q Consensus 262 ~ViPqLe~EL~se-d~~~Rl~At~llG~mfs~~~s~---~a~~y~~~w~~fL~R~~Dk--s~~VR~~~V~~~~~iL~s~- 334 (1678)
.++|.|..-+.++ +..+|..|..+++.++..-+.. +....+.++..|+....|. ++.||...+++...++..-
T Consensus 134 ~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~ 213 (861)
T 2bpt_A 134 ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIK 213 (861)
T ss_dssp HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999872689789999999999999972784356789889999999998415799987899999999999999999
Q ss_pred --CCCC-CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCH----HHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf --9999-86789999986607971679999999999965321378898----8899999760368936999999999999
Q 000315 335 --PSRA-DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV----ETVKLVAERLRDKSVLVKRYTMERLADI 407 (1678)
Q Consensus 335 --p~~~-~~~eI~~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~V~~----elL~~laeR~RDKK~~VRkeAi~~La~L 407 (1678)
.... ....++..|...+.|.|+.||.+++.++..++......+.. .++..+...+.|....||..|+..+..+
T Consensus 214 ~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l 293 (861)
T 2bpt_A 214 NNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTI 293 (861)
T ss_dssp HHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 87067668999999999986599889999999999999999889999988999999999987377278999999999999
Q ss_pred HH
Q ss_conf 99
Q 000315 408 FR 409 (1678)
Q Consensus 408 Y~ 409 (1678)
..
T Consensus 294 ~~ 295 (861)
T 2bpt_A 294 CE 295 (861)
T ss_dssp HH
T ss_pred HH
T ss_conf 98
No 10
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=1.00 E-value=1 Score=68.92 Aligned_cols=494 Identities=12% Similarity=0.104 Sum_probs=212.0
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 21120123577768999999999986259999821004999999983005999339999999969988319999986789
Q 000315 264 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQI 343 (1678)
Q Consensus 264 iPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~Dks~~VR~~~V~~~~~iL~s~p~~~~~~eI 343 (1678)
+..|..+|.+.+...|..++.-+-.+... |-++..- |...++-+.+.++.+|...--++..+...+|+ ...-+
T Consensus 15 ~~~i~~~L~~~~~~~k~~~~~kli~~~~~-G~d~~~~----~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e--~~~l~ 87 (591)
T 2vgl_B 15 IFELKAELNNEKKEKRKEAVKKVIAAMTV-GKDVSSL----FPDVVNCMQTDNLELKKLVYLYLMNYAKSQPD--MAIMA 87 (591)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHT-TCCCGGG----HHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHH--HHHTT
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHC-CCCHHHH----HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCH--HHHHH
T ss_conf 99999987399879999999999999987-9986889----99999881799899999999999998665806--89999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 99998660797167999999999996532137889888999997603689369999999999999987310149985200
Q 000315 344 LTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQN 423 (1678)
Q Consensus 344 ~~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~V~~elL~~laeR~RDKK~~VRkeAi~~La~LY~~~~~~~~~g~~~~~ 423 (1678)
+..|..-|.|+++-||..|+.++|.+. ...+...++..+...+.|.++.||+.|+.+|+++|+.+- ....
T Consensus 88 ~n~l~kdL~~~n~~ir~~AL~~L~~i~---~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p-------~~~~ 157 (591)
T 2vgl_B 88 VNSFVKDCEDPNPLIRALAVRTMGCIR---VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINA-------QMVE 157 (591)
T ss_dssp HHHHGGGSSSSSHHHHHHHHHHHHTCC---SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSC-------CCHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCH-------HHCC
T ss_conf 999997769999999999999987589---077899999999998179985899999999999985192-------4144
Q ss_pred CCCCCHHHHHHHHCCCCCCCH-HHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 016625888633202778840-4899842068699999799999999998129999999999999999999999999999
Q 000315 424 EFEWIPGKILRCLYDKDFGSD-TIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLS 502 (1678)
Q Consensus 424 ~~~wIP~~IL~~~Y~~d~~~~-lVE~vl~e~LlP~~~~~~~R~~~ll~l~~~LD~~~~kal~~il~~k~~l~~~~~~~l~ 502 (1678)
.-+|+| .+..++.+.|.... ..-..|. .+.+..... + +-.+.. .++..++..-.
T Consensus 158 ~~~~~~-~l~~lL~d~d~~V~~~A~~aL~-~i~~~~~~~--~-------~~~l~~---~~~~~Ll~~l~----------- 212 (591)
T 2vgl_B 158 DQGFLD-SLRDLIADSNPMVVANAVAALS-EISESHPNS--N-------LLDLNP---QNINKLLTALN----------- 212 (591)
T ss_dssp HHHHHH-HHHHTTSCSCHHHHHHHHHHHH-HHTTSCCSC--C-------SCCCHH---HHHHHHHHHHH-----------
T ss_pred CCCHHH-HHHHHHCCCCHHHHHHHHHHHH-HHHHHCCCC--C-------CHHCCH---HHHHHHHHCCC-----------
T ss_conf 635899-9999967998439999999999-997637875--4-------044269---99999987488-----------
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 98651389928999999999999875239935788999998841008899999997367999999999999999995589
Q 000315 503 LRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAK 582 (1678)
Q Consensus 503 l~~~~~~~d~~ei~~kL~~~i~~Ls~~fPD~~Ka~~~L~kf~klkD~Ri~klLk~~idp~td~ktv~~a~keLlkkL~~~ 582 (1678)
. ..+-.+.+ .++.++...|...... ..+...+..+ +...
T Consensus 213 ---~----~~~~~q~~---il~~l~~l~~~~~~~~-----------~~~l~~l~~~--------------------l~~~ 251 (591)
T 2vgl_B 213 ---E----CTEWGQIF---ILDCLSNYNPKDDREA-----------QSICERVTPR--------------------LSHA 251 (591)
T ss_dssp ---H----CCHHHHHH---HHHHHHTSCCCSHHHH-----------HHHHHHHTTC--------------------SCSS
T ss_pred ---C----CCCHHHHH---HHHHHHHHCCCCHHHH-----------HHHHHHHHHH--------------------HCCC
T ss_conf ---7----88257899---9999998679985999-----------9999999998--------------------7589
Q ss_pred CC--HHHHHHHHHHHHH-----CCCCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 76--5999999998620-----02557---66899999999961043014658899999999985289573444999999
Q 000315 583 HR--LYDFLSTLSMKCS-----YLLFN---KEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVN 652 (1678)
Q Consensus 583 ~~--l~d~l~~Ll~R~S-----~lifN---ks~V~~LL~~v~~s~~~~n~~~~~~a~eLL~~IS~~~P~lFk~~v~eLi~ 652 (1678)
++ .++.++.+.+-.. +-.+. ..-++.|+... + .+. .....+++-|..|....|.+|..+...+..
T Consensus 252 ~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~--~-~d~--~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~ 326 (591)
T 2vgl_B 252 NSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL--S-GEP--EVQYVALRNINLIVQKRPEILKQEIKVFFV 326 (591)
T ss_dssp TTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT--T-SCH--HHHHHHHHHHHHHHHHCCSTTTTCTTTTSC
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH--C-CCC--CHHHHHHHHHHHHHHHCHHHHHHHHHHHEE
T ss_conf 84999999999999740247887999999999999999996--6-992--089999999999998696989998875500
Q ss_pred HHHHCCCCCHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 97510210046699999986020475320066228999998840599587999999999630787321499999999985
Q 000315 653 LLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDM 732 (1678)
Q Consensus 653 lL~~~~~~~~e~aLkiLak~~~~~~e~~~~~~s~l~~~L~~lal~GtpkqAKyAVr~Laai~~~~~~~~~~~L~~~L~~~ 732 (1678)
.. +++..+...+|.+|++.+.. ++. ..+...|..+.....+.-.+.|+++|+.+...-. .....++..|++.
T Consensus 327 ~~-~d~~~Ir~~al~~L~~l~~~--~nv----~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~-~~~~~~v~~Ll~l 398 (591)
T 2vgl_B 327 KY-NDPIYVKLEKLDIMIRLASQ--ANI----AQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVE-QSAERCVSTLLDL 398 (591)
T ss_dssp CT-TSCHHHHHHHHHHHHHTCCS--STH----HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHHHHHCCH--HHH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHH
T ss_conf 36-99399999999999987786--239----9999999999865799999999999999998574-6799999999999
Q ss_pred HHHCCC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 210599--834889999999331433145057899999983513566667888787778615678999999999995159
Q 000315 733 LEEKTH--LPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLP 810 (1678)
Q Consensus 733 L~~~~~--l~t~L~sLa~Iaq~ap~vfe~~~~eI~~fIik~ILl~~~~~~~~~~~~W~d~s~~~~aKi~aLK~Lvn~ll~ 810 (1678)
+..... ....+.++..|.+..|...+. ++..+...+ .. +..+ .++..+ -|++|
T Consensus 399 l~~~~~~v~~e~i~~l~~ii~~~p~~~~~----~v~~L~~~l-~~------------~~~~---~~~~~~-----~wilG 453 (591)
T 2vgl_B 399 IQTKVNYVVQEAIVVIRDIFRKYPNKYES----IIATLCENL-DS------------LDEP---DARAAM-----IWIVG 453 (591)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHSCSSCCT----THHHHHHTT-TT------------CCSH---HHHHHH-----HHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHHHCCCHHHH----HHHHHHHHH-HH------------CCCH---HHHHHH-----HHHHH
T ss_conf 83551689999999999999979205789----999999888-74------------2378---999999-----99997
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCC-CCHHHH
Q ss_conf 8766643205889999999540376666778996667675799999999853104887788999998312467-726699
Q 000315 811 VKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEI-SFPQAK 889 (1678)
Q Consensus 811 ~~~~~~~~~i~~ll~lL~~il~~GEi~~~~~tp~~~ksrLRLaAa~alLKLAr~~d~~I~~d~f~l~~l~~qD-~~~~VR 889 (1678)
--..... ... .+|..++.. +.. .-...|+++-.++.||.........+.+.+++.....| ..++||
T Consensus 454 ey~~~~~-~~~---~~l~~l~~~--~~~-------~~~~vr~~~l~a~~Kl~~~~p~~~~~~i~~ll~~~~~d~~d~evr 520 (591)
T 2vgl_B 454 EYAERID-NAD---ELLESFLEG--FHD-------ESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLR 520 (591)
T ss_dssp TTCTTCT-THH---HHHHHHSTT--CSS-------SCHHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHTTCCCHHHH
T ss_pred CCCCCCC-CHH---HHHHHHHHH--HCC-------CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 0312136-789---999999986--645-------988899999999999996196579999999999865358996799
Q ss_pred HH
Q ss_conf 99
Q 000315 890 KL 891 (1678)
Q Consensus 890 ~~ 891 (1678)
.+
T Consensus 521 dR 522 (591)
T 2vgl_B 521 DR 522 (591)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
Done!