Query 000317
Match_columns 1676
No_of_seqs 376 out of 1790
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 04:06:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000317.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000317hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0230 Phosphatidylinositol-4 100.0 2E-235 5E-240 2190.0 84.7 1326 186-1656 232-1597(1598)
2 cd00139 PIPKc Phosphatidylinos 100.0 2.9E-67 6.4E-72 611.6 29.5 256 1383-1646 53-313 (313)
3 COG5253 MSS4 Phosphatidylinosi 100.0 1.8E-68 3.8E-73 618.7 13.2 359 1264-1656 242-607 (612)
4 smart00330 PIPKc Phosphatidyli 100.0 7.8E-66 1.7E-70 606.8 27.9 258 1379-1645 22-342 (342)
5 KOG0229 Phosphatidylinositol-4 100.0 7.4E-58 1.6E-62 532.1 22.5 252 1384-1646 95-420 (420)
6 PF01504 PIP5K: Phosphatidylin 100.0 6.2E-56 1.4E-60 506.2 18.8 222 1414-1645 2-252 (252)
7 PLN03185 phosphatidylinositol 100.0 1.3E-54 2.7E-59 545.6 27.7 248 1384-1646 401-765 (765)
8 cd03334 Fab1_TCP TCP-1 like do 100.0 2.4E-47 5.1E-52 438.3 27.6 255 265-531 2-261 (261)
9 TIGR02344 chap_CCT_gamma T-com 100.0 1.2E-40 2.5E-45 417.9 26.2 256 268-536 145-413 (525)
10 TIGR02339 thermosome_arch ther 100.0 3.4E-38 7.4E-43 395.1 30.2 255 268-536 145-412 (519)
11 KOG0364 Chaperonin complex com 100.0 1.2E-39 2.7E-44 374.6 15.3 254 268-536 148-413 (527)
12 cd03343 cpn60 cpn60 chaperonin 100.0 8E-38 1.7E-42 391.9 26.9 255 268-536 144-409 (517)
13 cd03339 TCP1_epsilon TCP-1 (CT 100.0 1.3E-37 2.9E-42 390.2 27.0 256 267-536 153-419 (526)
14 cd03335 TCP1_alpha TCP-1 (CTT 100.0 1.9E-36 4.1E-41 379.9 27.4 255 268-536 138-410 (527)
15 cd03340 TCP1_eta TCP-1 (CTT or 100.0 7.5E-36 1.6E-40 374.3 29.4 249 268-536 149-411 (522)
16 TIGR02343 chap_CCT_epsi T-comp 100.0 8.1E-36 1.7E-40 374.1 29.0 255 268-536 158-423 (532)
17 PTZ00212 T-complex protein 1 s 100.0 6E-36 1.3E-40 375.5 27.5 248 268-536 159-418 (533)
18 cd03336 TCP1_beta TCP-1 (CTT o 100.0 2.6E-35 5.6E-40 368.8 29.3 249 267-536 146-406 (517)
19 cd03333 chaperonin_like chaper 100.0 1.4E-35 3E-40 330.6 23.8 206 269-523 3-209 (209)
20 cd03338 TCP1_delta TCP-1 (CTT 100.0 1.4E-35 3.1E-40 371.3 26.7 254 268-536 137-408 (515)
21 TIGR02342 chap_CCT_delta T-com 100.0 2.5E-35 5.4E-40 368.9 27.6 254 268-536 138-409 (517)
22 cd03337 TCP1_gamma TCP-1 (CTT 100.0 2.7E-35 5.8E-40 365.6 23.7 225 268-536 145-372 (480)
23 TIGR02347 chap_CCT_zeta T-comp 100.0 8.1E-35 1.8E-39 364.5 27.5 252 268-536 146-418 (531)
24 TIGR02340 chap_CCT_alpha T-com 100.0 9.6E-35 2.1E-39 365.1 28.0 255 268-536 142-414 (536)
25 TIGR02345 chap_CCT_eta T-compl 100.0 8.2E-35 1.8E-39 364.6 25.5 250 268-536 149-412 (522)
26 KOG0361 Chaperonin complex com 100.0 1.9E-34 4.1E-39 326.7 18.9 248 270-537 155-416 (543)
27 TIGR02341 chap_CCT_beta T-comp 100.0 4.2E-33 9.2E-38 348.7 28.3 248 268-536 148-407 (519)
28 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 2.8E-32 6.1E-37 338.8 24.4 233 268-536 142-375 (484)
29 cd00309 chaperonin_type_I_II c 100.0 8.8E-32 1.9E-36 333.5 24.6 221 268-536 137-358 (464)
30 TIGR02346 chap_CCT_theta T-com 100.0 2.7E-31 5.8E-36 333.3 27.1 250 268-536 149-410 (531)
31 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 4.2E-31 9.1E-36 328.5 26.6 249 268-536 117-377 (485)
32 KOG0358 Chaperonin complex com 100.0 2.4E-31 5.2E-36 301.2 15.5 256 267-536 154-426 (534)
33 cd03341 TCP1_theta TCP-1 (CTT 100.0 2.2E-30 4.8E-35 321.2 24.3 222 268-536 139-362 (472)
34 KOG0363 Chaperonin complex com 100.0 1.5E-30 3.2E-35 293.6 18.0 267 249-536 130-411 (527)
35 KOG0360 Chaperonin complex com 100.0 8E-30 1.7E-34 296.6 14.7 261 262-536 142-420 (545)
36 KOG0359 Chaperonin complex com 100.0 2.4E-29 5.1E-34 289.9 14.0 253 267-536 142-409 (520)
37 COG0459 GroL Chaperonin GroEL 100.0 1E-27 2.3E-32 297.6 22.5 244 273-536 143-406 (524)
38 KOG0362 Chaperonin complex com 99.9 1.4E-24 3.1E-29 255.0 22.0 233 285-537 170-414 (537)
39 PRK00013 groEL chaperonin GroE 99.9 2.1E-23 4.5E-28 262.1 24.5 221 268-536 141-420 (542)
40 cd03344 GroEL GroEL_like type 99.9 3E-23 6.5E-28 259.9 25.8 221 267-536 138-418 (520)
41 PRK12849 groEL chaperonin GroE 99.9 4.4E-23 9.4E-28 259.2 26.0 220 268-536 141-420 (542)
42 PTZ00114 Heat shock protein 60 99.9 7.7E-23 1.7E-27 258.0 25.9 220 268-536 153-433 (555)
43 PRK12851 groEL chaperonin GroE 99.9 8.8E-23 1.9E-27 256.6 23.9 220 269-536 143-421 (541)
44 TIGR02348 GroEL chaperonin Gro 99.9 1.5E-22 3.3E-27 254.0 24.6 220 268-536 140-419 (524)
45 PRK12850 groEL chaperonin GroE 99.9 3.8E-22 8.2E-27 251.1 25.0 221 268-536 142-421 (544)
46 PRK12852 groEL chaperonin GroE 99.9 2.1E-21 4.6E-26 244.7 25.6 220 268-536 142-421 (545)
47 CHL00093 groEL chaperonin GroE 99.9 7E-21 1.5E-25 239.3 23.3 222 268-536 141-420 (529)
48 PRK14104 chaperonin GroEL; Pro 99.9 2.9E-20 6.4E-25 234.0 24.8 220 268-536 142-421 (546)
49 PLN03167 Chaperonin-60 beta su 99.8 2.1E-20 4.6E-25 236.7 19.1 230 268-536 196-475 (600)
50 KOG0357 Chaperonin complex com 99.8 7E-20 1.5E-24 207.2 8.6 143 383-536 144-287 (400)
51 KOG0230 Phosphatidylinositol-4 95.6 0.01 2.3E-07 80.3 4.5 100 778-892 658-757 (1598)
52 KOG0356 Mitochondrial chaperon 93.9 0.57 1.2E-05 58.9 13.1 217 292-536 173-435 (550)
53 PF02579 Nitro_FeMo-Co: Dinitr 46.5 46 0.00099 32.5 5.9 48 386-434 45-92 (94)
54 cd01143 YvrC Periplasmic bindi 46.5 43 0.00093 36.8 6.4 51 387-437 53-110 (195)
55 PLN02667 inositol polyphosphat 44.8 36 0.00077 41.1 5.7 70 1435-1519 23-99 (286)
56 PF06296 DUF1044: Protein of u 44.3 67 0.0015 34.0 6.9 77 1390-1466 2-106 (120)
57 TIGR03659 IsdE heme ABC transp 40.5 42 0.00091 39.9 5.5 52 387-438 84-141 (289)
58 cd00851 MTH1175 This uncharact 39.9 52 0.0011 32.6 5.2 40 384-424 53-92 (103)
59 cd01144 BtuF Cobalamin binding 39.7 57 0.0012 37.4 6.3 52 387-438 50-108 (245)
60 PRK09534 btuF corrinoid ABC tr 38.8 54 0.0012 40.6 6.2 52 387-438 112-170 (359)
61 cd01138 FeuA Periplasmic bindi 33.8 71 0.0015 36.8 5.8 51 387-438 59-113 (248)
62 PF13324 GCIP: Grap2 and cycli 33.6 70 0.0015 38.2 5.8 11 293-303 240-250 (275)
63 cd00562 NifX_NifB This CD repr 32.9 82 0.0018 31.1 5.4 38 386-424 53-90 (102)
64 PF01497 Peripla_BP_2: Peripla 26.1 1.1E+02 0.0025 34.5 5.8 51 388-438 54-112 (238)
65 cd01146 FhuD Fe3+-siderophore 25.9 1.3E+02 0.0028 34.9 6.2 52 387-438 58-115 (256)
66 PF07450 HycH: Formate hydroge 25.1 55 0.0012 34.9 2.6 22 1575-1603 24-45 (131)
67 COG1997 RPL43A Ribosomal prote 24.5 57 0.0012 32.5 2.4 43 773-845 32-74 (89)
68 cd04743 NPD_PKS 2-Nitropropane 23.6 1.8E+02 0.0039 35.8 6.9 56 384-440 72-127 (320)
69 PRK03379 vitamin B12-transport 23.0 1.2E+02 0.0027 35.5 5.4 51 387-437 65-122 (260)
70 PF12226 Astro_capsid_p: Turke 22.9 49 0.0011 36.5 1.8 51 1388-1444 101-154 (230)
71 PRK15084 formate hydrogenlyase 22.9 60 0.0013 34.7 2.4 22 1575-1603 26-47 (133)
72 cd01140 FatB Siderophore bindi 22.0 1.6E+02 0.0035 34.3 6.1 52 387-438 65-123 (270)
73 COG1433 Uncharacterized conser 21.9 2.2E+02 0.0047 30.4 6.2 52 385-437 56-107 (121)
74 PHA02682 ORF080 virion core pr 20.8 1.4E+02 0.0031 33.7 4.7 66 901-973 192-257 (280)
75 PF07282 OrfB_Zn_ribbon: Putat 20.5 53 0.0011 30.7 1.3 30 1-46 30-59 (69)
76 cd01147 HemV-2 Metal binding p 20.3 1.2E+02 0.0026 35.0 4.5 51 387-437 67-126 (262)
77 PF04810 zf-Sec23_Sec24: Sec23 20.3 58 0.0012 27.7 1.4 32 1-44 4-35 (40)
No 1
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-235 Score=2190.03 Aligned_cols=1326 Identities=41% Similarity=0.650 Sum_probs=967.3
Q ss_pred CCCccCCC--cccCCCCCCCCcccccccccCCCCccccCCCCCCcCC---cCCCCCCcccCCCcccchHHHHHHHHHHHH
Q 000317 186 NDNEMDMQ--IWEPPEPEDPEDDIEGSIAYNDDDEDEECGDGTKWGK---PSSLSHFRDEGGGRLKFKEEKQRAMEKVVS 260 (1676)
Q Consensus 186 ~~~d~~~~--~w~pp~p~~~~d~~~~~~~~ddd~~~~~~~~~~~~~~---~ss~~~~~~~~~~~~~~~~~~~~~L~~~~~ 260 (1676)
+++||+++ +|.||+||+|+||+|+.++|+||+++| .++.|++ +.+++.+.....+ +..++..+.|+++..
T Consensus 232 ~~~d~~~~~~~~~p~~pene~dd~~~~~~~~~~~~~D---~~~~~~~~~~s~s~s~~~~~~~~--~~~ee~~~~m~~~~~ 306 (1598)
T KOG0230|consen 232 EILDFENNGLLWEPPEPENEEDDAESVLADDDDDEGD---TSGKWNPLRLSNSFSAPEYKSKD--KSAEEDEKVMRNVVE 306 (1598)
T ss_pred cccchhhccCCCCCCCCCcccccchhccccccccccc---cccccccccccCccCCCCccccc--cchhhcchhhhcccc
Confidence 78999999 999999999999999988775555433 2367876 6788887555555 688899999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCC-CchhHHHHHHHHHHHHHhhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEe
Q 000317 261 GKFKAIVSQLLKSVGVVSSGK-DGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFK 339 (1676)
Q Consensus 261 ~h~~~ll~qLL~~~~~sl~sK-~~~~W~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GGs~~DS~vI~GVV~~ 339 (1676)
.||++++.||++.+.+++.++ ...+|.++++.|+|+|+..++|+.+.++.|||++|||||||+||++.||++|+||||+
T Consensus 307 ~~fr~~~a~Llr~~~ls~~~d~~~~~W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS~vi~Gvv~s 386 (1598)
T KOG0230|consen 307 SHFRALVAQLLRSENLSVVMDGAHQEWLDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDSEVIKGVVCS 386 (1598)
T ss_pred chHHHHHHHHhcccCcCccccchhhhHHHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccceeeeEEEee
Confidence 999999999999999985443 4568999999999999999999998899999999999999999999999999999999
Q ss_pred eccCCCCCCccccCCcEEEEeeeccccccc--cccHHH-HHHHHHHHHHHHhhHhcCCCeEEEecccccHHHHHHHHHcC
Q 000317 340 KHAAHKHMPTEYKNPRLLLIRGVLGLSSSG--LSSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 416 (1676)
Q Consensus 340 Knvahk~M~~~i~nPRILLL~~~LEy~r~e--l~Sle~-i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L~~~g 416 (1676)
|+++||+|.+++++|||||+.|+|||+|.. |+|+++ ++||++||+.+|+||.+.+||||||+|+|+++||++|..+|
T Consensus 387 Kn~~~k~M~~~~e~prilll~g~leyqrisn~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~ 466 (1598)
T KOG0230|consen 387 KNVAHKRMATKYENPRILLLGGPLEYQRISNQLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKG 466 (1598)
T ss_pred cchhhhhhhhhccCCceEEEecchhhhhhhccccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccC
Confidence 999999999999999999999999999986 999999 99999999999999999999999999999999999999999
Q ss_pred CeEeecCCHHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEEE
Q 000317 417 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLL 495 (1676)
Q Consensus 417 Itvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~gcTILL 495 (1676)
|+++.|||+..|+||||||||+|++++| ++.++||+|+.|+++++.++| +..||+|||+||++++||||||
T Consensus 467 I~lvlnvK~s~leRIsR~tga~I~~siDslt~~klg~C~~F~v~~~~e~h--------k~sKTlmffegc~~~lG~TiLL 538 (1598)
T KOG0230|consen 467 ISLVLNVKRSLLERISRCTGADIVPSVDSLTSQKLGYCELFRVENYVEEH--------KPSKTLMFFEGCPKPLGCTILL 538 (1598)
T ss_pred eEEEEeccHHHHHHHHHHhcCceecchhhhhccccCCCccHhhhhhhhcc--------cchhhhHHhhcCCCCCCceEEe
Confidence 9999999999999999999999999999 999999999999999999875 5679999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCcccccCCccccc-cCCCcccccccccCCCCCCcccccCcccCCC
Q 000317 496 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTIPFAEVA-GILPMEQQHPALENGNSNVSCFEHSSVESGS 574 (1676)
Q Consensus 496 RG~s~~~L~evKrvl~dav~vv~~l~lE~s~l~ggGa~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (1676)
||++.++|++||+|++++++++||+.||++||+|.||++......... ..+++... ..+.+|.....
T Consensus 539 rG~~~~eLkkVK~Vvq~~v~aay~l~LE~SflaDe~asi~~~~~~~~~~~~~~~~~~------~~s~~~~~t~s------ 606 (1598)
T KOG0230|consen 539 RGDSLEELKKVKHVVQYLVFAAYHLALETSFLADEGASISSPKLSIPTSVETSIINR------SISTSPGETDS------ 606 (1598)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccccccccccceeccccccc------ccccCCCCCcc------
Confidence 999999999999999999999999999999999999998864332211 11110000 00111110000
Q ss_pred CcccCCCCCCCcCCCCCcCCCCCCCccccccCCCCccccCccccccccccccccCCCCcccccCC-----Cccccccccc
Q 000317 575 STMDIPISNGFHEDGSYANSGPEGESILSYEPYNPAVFSGFSSLSASLRKVIGDNFPLSSAAAYP-----SLTSYFGFRG 649 (1676)
Q Consensus 575 ~~~~~~~~n~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~l~~~l~~~~~~~~P~~~~~~~~-----~l~~~~~~~~ 649 (1676)
.....+......+.... . .....+.++..|. .....|+....+++ .+..+.+.-.
T Consensus 607 t~~~a~~~~~~~e~~~~-~-~~~~~~~ls~sp~------------------~~~~~~~~~i~P~~~~~e~~~~~~~~~~~ 666 (1598)
T KOG0230|consen 607 TAEKAPVEALQVEPNRF-N-GALSSELLSSSPF------------------LEFPLDLLEIAPGELVIETRLSSYSKGPK 666 (1598)
T ss_pred hhcccchhhhccchhhh-h-cccccceeecccc------------------cccCCCccccCCccceeecchhhhcCchh
Confidence 00000000000000000 0 0000111111111 00011110000000 0000000000
Q ss_pred ccccCccccCCCccccccccCCCCCCccCCCCcccccc---cCCCCCCCCCCCCCCCCC--CCCCCCCCcccCCccccCC
Q 000317 650 REQSGQITEDVPVSTIMDASLDGPCDTEAKSSSDEEKS---LDGQPTSLPSCPEAPLSM--GKDCGNDEDHSQSQEDANA 724 (1676)
Q Consensus 650 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~q~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~ 724 (1676)
..+-....+... ..++.. ..+....+.+...... ...+. +..+... .++..-.+-+.+..++.++
T Consensus 667 ~~~lv~~~es~~-~~~~~s---~~~~~~~l~e~~~~~~~~~~~k~~------~~~~~~~~~~~~~~~~~~e~~~s~~~~~ 736 (1598)
T KOG0230|consen 667 QNGLVPAHESVL-NDLHES---TLSILSKLPETRSGTHEGNEDKGP------GLEPELANNQNIQRPEETEEQSSKDALD 736 (1598)
T ss_pred hccccccccccc-cccccc---cccccccccchhcccchhccccCc------cccccccccccccchhhhhhhhcccCCC
Confidence 000000000000 000000 0000000110000000 00000 0000000 0000000111125678999
Q ss_pred CCCCCeEEEEEeeccCCCCCccCCccEEEEeccCCCCccHHHHHHHHhhccCCCCCCCCCChhcccceeeecCcEEEEEE
Q 000317 725 SLDSQSILVLMSSRNALRGTICEQSHFSHIMFYKNFDVPLGKFLQDNLLNQRKQCASCSELPEAHFYYYARHNKQLTIRV 804 (1676)
Q Consensus 725 p~~HQsI~VL~Ss~~~~~~~pC~~P~lv~I~fY~~~D~tLGqFLed~~~~~~~~C~sC~~pm~~H~r~YvH~~g~ltI~V 804 (1676)
|.+||+|+||||++|.+++.+|++|||++|+|||.+|++|||||+++||+++|.|++|.+||++|+|||||++|+++|.|
T Consensus 737 ~~~HQsilVl~ss~~~~k~~~C~r~~l~~ikyy~~~D~~lg~fL~~~~f~~~~~C~sC~~~~laHv~~yvh~~g~l~I~v 816 (1598)
T KOG0230|consen 737 PSSHQSILVLFSSRSVLKGSVCERPHLLRIKYYGSFDKPLGRFLRDYLFDQRYMCPSCNEPMLAHVRCYVHGNGSLTISV 816 (1598)
T ss_pred ccccceeEEEEeeeeeccCCccccccEEEEEeeccccchHhHHHHHHHhcccccCccccchHHHHHHHHhhccCceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCccccCCCCCCCcEEEeecCCCCCCCCCCCCCCceEEcccccccccHHHHHhhhcCCCCCCCCCCCCCCCcccccee
Q 000317 805 KRLPDRIRLSGEAEGKLWMWSRCGRCKTANGVPKSTKRVVISTAACGLSFGKFLELSFSHHSSSTRLSSCGHSLHRDFLY 884 (1676)
Q Consensus 805 e~l~~~~~lpge~~~~I~MWs~Ck~C~~~~g~~~sTp~v~MSd~tW~~SFGKfLEL~F~~~~~~~r~~~C~H~l~rDhlr 884 (1676)
++++.. +||+.+|+|||||||++|++. ||+|++|+||++||++||||||||+||+|+++.|+..|||+|||||||
T Consensus 817 ~~~~e~--l~~e~~~kI~~w~~ClkC~~~---~~sT~rv~~Sdaaw~lSfgKfLEl~fs~~a~~~R~~~C~Hsl~rD~L~ 891 (1598)
T KOG0230|consen 817 KKLPEL--LPGEQKGKIWMWSRCLKCNRF---PPSTRRVVMSDAAWGLSFGKFLELSFSNHATANRVASCGHSLHRDCLR 891 (1598)
T ss_pred eccccc--cccccCceEEEEeccccCCCC---CCCcceeEcchhhHhhhHHHHHHhhhccccccccccCCcchhhhhhhh
Confidence 999987 899999999999999999985 899999999999999999999999999999999999999999999999
Q ss_pred ecccCCeEEEEEeeeeeeeEEecCCCeeEeccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhh
Q 000317 885 FFGLGPMVGMFKYSPFTTYNMCVPPQKLEFSNSINKWLKEEFQNVYTKGILLFSEVESSLKQIGSRFVGSTLNLQGSLKE 964 (1676)
Q Consensus 885 yFg~~~~Va~f~YspI~v~ev~lPp~~l~~~~~~~~~l~~e~~~v~~k~~~~f~sV~~rL~~ik~~~~~~~~~~~~~~~~ 964 (1676)
|||||+|||+|+|++|++|+|++||.+|+|++..++|+++|+++|+.||+.+|++|.++|.+|+.+-+ . +..
T Consensus 892 ffgf~~mva~f~ys~i~v~~v~lpp~~l~~~~~~~~~~~~e~k~v~~k~~~~~n~v~~~l~~i~~~~~----~----~~~ 963 (1598)
T KOG0230|consen 892 FFGFGNMVACFRYSPIEVYEVDLPPSKLEFNHIQQEWLQEEIKEVIEKGEELYNEVLERLSRIAEKDE----N----RPL 963 (1598)
T ss_pred hcccCCceeeeeeccceeEEEeCChhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc----c----cch
Confidence 99999999999999999999999999999994444999999999999999999999999999998721 1 357
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhhHhHHHHHHHHHHHHhhhhhHHhhhccCCCCcc-cccCCCCCCCCC
Q 000317 965 FSVTSEILKQERSVFEVDIQKTVAKKVHSDEALHKLLSLNRLRWELLIESCIWDRRLHSLLLPDPTV-VITGATEKPGPE 1043 (1676)
Q Consensus 965 i~eL~~~l~~e~~e~~~~l~~~~~~~~~~~~~~~~iL~lN~l~r~L~~~~~~Wd~rl~~l~~~~~~~-~~~~~~~~~~~e 1043 (1676)
+.+|+.+|.+|+.+|++.|+.++.+.....+..+++|.||+++|.|...++.||.||+.+....+.. ..+.+.++. +
T Consensus 964 i~~l~~~l~~e~~~f~~~l~~~~~~~~~~~~~s~d~l~l~~~rr~l~~~s~~w~~~l~s~~~~~k~~~~~~~~~~~~--~ 1041 (1598)
T KOG0230|consen 964 IQELKELLKHEKKEFKQNLQPIFTLEVDDGQLSHDILALNRDRRALLASSYLWDERLISLSKSLKLESSKDTKPKES--E 1041 (1598)
T ss_pred hhhhhhhhhhhHHHHHHhhhhhhhhccccCcchhhHHHHHHHHHHHHhhhccccccchhhhhhhccccccccccccc--c
Confidence 8999999999999999999999988877788899999999999999999999999998765432200 000001111 1
Q ss_pred cccccccCCCCCCCCCCCCCcCCCCCCCCCCCCCCCccCcccccchhhhhhcccCCCCCCCCcCccccccc-----cccc
Q 000317 1044 QTKVKMDGTTAKGNEVPEPEVDSGNGDNVSNNFGNLEVLPDVAAEADELVVKEIPIDGPDRESGERDHKKT-----TVLK 1118 (1676)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 1118 (1676)
+. .+ ......+++......++.....+......+...++..+.. ...+...... .+..
T Consensus 1042 ~~-----~~-~~~~r~p~~~k~~~~~~~~~~~~s~~~~~~~~~lp~~~~s-----------~~~d~~~~~~~~~~~~~~s 1104 (1598)
T KOG0230|consen 1042 TN-----ST-AKRKRSPEPQKGVDEDSFLTDSSSDVSSLEHLNLPLPEDS-----------NSTDTGLSGPSEVLEDNES 1104 (1598)
T ss_pred cc-----Cc-cccccCchhhccccccccccccccccCccccccCCCCCcc-----------cccchhccCcccccccccc
Confidence 00 00 0000011110000000000000000000000000000000 0000000000 0000
Q ss_pred ccccc--cccC-----CCCCCccccccccccCCCCCCCCCCCcccccccccccccccccccCCcccCCCCCccCCCCCCC
Q 000317 1119 DVETS--IASD-----LSSTSLANEDSMVRSNVSDYLSGDDNVQAGKFLMSENLQVDKVVPNSQYLANSGSVVDPNASKN 1191 (1676)
Q Consensus 1119 ~~e~~--~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~ 1191 (1676)
..+.. ..+. ...+++.+..+..|.. .+. + ....|.... +...++. +.
T Consensus 1105 ~~~~~~~v~n~~s~~~~~~~~~~~~l~~~~~g----~r~--~--------------~~~~P~s~~----~~~~~~~--~~ 1158 (1598)
T KOG0230|consen 1105 IDEMLGSVRNTYSLANKVRKILKQILDSATIG----NRA--N--------------PKSSPFSGQ----DHSTDLP--LE 1158 (1598)
T ss_pred hhhcccccccccchhhHHHHHHHHhccccccc----ccc--c--------------CCCCCCchh----hhccccc--cc
Confidence 00000 0000 0000001111111100 000 0 000111000 0000000 00
Q ss_pred CCccCcccchh-hhccccccCchHHHHH-HHHHhhccCCCCCccccccCCCCCCCchhhhhhccCCcccccCCCCCccee
Q 000317 1192 ETSTHSLLSDL-EKLNGWFWMPFSELQQ-IYMKDLQRGFVPKFECVSRYTPEHLPTVYQLISEEGTRMHIPLGAENYMVS 1269 (1676)
Q Consensus 1192 ~~~~~~~~~~~-~~~~~~~~~p~~~~~~-~~~~~~~~~~~~k~~~v~~~~p~~~~~~~~~~~~~g~~~~~p~~~~~~~v~ 1269 (1676)
... +... .+...|++.||..+.. .+.++.+... ++.......-|.+.++-.....+.++|+.+|++.++.+|+
T Consensus 1159 ~~~----~~~~e~~~~~~~e~~~~~~~~~~~~~e~~lns-~~~~~~~~~~~k~~~s~~~s~~~~~~rLl~p~~~ndl~vp 1233 (1598)
T KOG0230|consen 1159 SNP----IHVLEKELSSWIEDPLTNMYYREATKELSLNS-QKNSAETKEPPKYPSSESESEPESSSRLLLPLGLNDLVVP 1233 (1598)
T ss_pred cCC----ccccccccHHHHhhhhhhHhHHHHHHHHHhhc-chhhcccccCCcCcccccccccccccceeccccCCcccCC
Confidence 000 0111 1455799999988865 5545443322 1211122223334333222334677899999999999999
Q ss_pred eccCCcchhHHhhhhcccCCccccccccCCCCCCCccccccccccccccC-Ccccc-ccccCCCCCCCCcccccccccCc
Q 000317 1270 DYEGELSSIIACALAVLKEMPLSTVVFNEDSGRDGDMAVKTIDSLRSLTR-IPTMA-SSLWSVNGSSDSDSIYASLSISS 1347 (1676)
Q Consensus 1270 V~edEpSSiIA~aL~s~ey~~~l~~~~~~~~~~~~~~~~k~~~s~~~~~~-~~~~~-ss~~s~~~~~~s~~~~~~~s~~~ 1347 (1676)
||||||+|+|||||++.+|..+... .+ . ...-+.+.+.. ..... ...|... +.+...
T Consensus 1234 ~~edpp~s~ia~al~s~~~~~q~~~----p~-----~--sis~~~S~~~~~~s~~~e~~~~~~~-sl~~s~--------- 1292 (1598)
T KOG0230|consen 1234 VYEDPPPSLIAYALSSKERINQESS----PG-----L--SISFSLSNLQGRLSKISEFDDTKSE-SLDNSG--------- 1292 (1598)
T ss_pred cccCCCchhhhhhhcchhhccCCCC----CC-----c--cccccccccccchhhhhhhhhhhhc-cccccc---------
Confidence 9999999999999999888765431 00 0 00000000000 00000 0000000 000000
Q ss_pred ccccccccccccccccCCCCCCCCCceeeeeccccCCCceEEEEeCHHHHHHHHHhcCCChHHHHHHhcccCcCCCCCCC
Q 000317 1348 EDSRFSSFDGLNLLESLIPPEVLSPEVSIGISKSLGKGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNWDAKGGK 1427 (1676)
Q Consensus 1348 ~~~~~~~~d~~~~l~s~~~~e~~~~~v~~~~~~~~~~~~~~~~~y~p~~F~~LR~~~gi~e~~yi~SLs~~~~~~~sgGK 1427 (1676)
...+.+ ..++.++++. ++..+++.++|++|+.+|+|++|||++|++||+.||+++++||+||+||.+|.++|||
T Consensus 1293 --l~~s~~---~~~e~l~~~~-~~~~~h~~~~f~egk~k~svk~~yAe~F~~LR~~c~~sEe~fIrSLsRc~~W~aqGGK 1366 (1598)
T KOG0230|consen 1293 --LESSSY---RRGENLQKSK-LETRTHLEYQFSEGKAKYSVKCYYAEQFRALRKICCPSEEDFIRSLSRCVKWEAQGGK 1366 (1598)
T ss_pred --cchhhh---cchhhccccc-cccccceeeeccCCceEEEEEEEehhhHHHHHHhhCchHHHHHHHHhcCcccccCCCc
Confidence 000011 1223333332 4556889999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEecCCcEEEEecCHHHHHHHHHHHHHHHHHHhhhcCCCCCcchheeeeeEEEeeccCCCCcceeEEEEEEeecc
Q 000317 1428 SKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYFKYMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLT 1507 (1676)
Q Consensus 1428 SGs~F~~T~D~rFIiKtis~~E~~~fl~~lp~Yf~y~~~~~~~~~~TlL~Ki~Gly~i~~k~~~~g~~~k~~~iVMeNlf 1507 (1676)
|||+|+||.|+|||||+|++.|+++|++|||+||+||.+++++..||+||||||+|||.+|++++|++.||++|||||||
T Consensus 1367 Sgs~F~KTlDDRFIiKq~sk~EleSFikFAP~YFkYl~~s~~~~~PT~LAKIlGiyqV~vK~~~sgke~K~DvmVMENLf 1446 (1598)
T KOG0230|consen 1367 SGSFFAKTLDDRFIIKQMSKTELESFIKFAPAYFKYLTESISQKSPTCLAKILGIYQVSVKSPKSGKETKMDVMVMENLF 1446 (1598)
T ss_pred ccceeeccccchhhhhhccHHHHHHHHhhhHHHHHHHHHHHhcCCcchhhhhheeEEEEEecCCCCceeEeeeeeehhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccceeeeccCccccccccCCCCCCccccchhhhhhcCCCCceeCHHHHHHHHHHHHhhHhhhccCCccccceeEEee
Q 000317 1508 FERNITRQYDLKGALHARYNTTVDGSGDVLLDQNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSLLVGVD 1587 (1676)
Q Consensus 1508 ~~~~i~~~yDLKGS~~~R~~~~~~~~~~VL~D~nf~~~~~~~pi~l~~~~k~~L~~~l~~Dt~FL~~~nvMDYSLLvGi~ 1587 (1676)
|+++++|+||||||+|||+++.+++.+.||+|+||+++++++||||++++|+.|.++|||||.||+++||||||||||||
T Consensus 1447 Y~r~vsRifDLKGS~RnR~v~~t~~~d~VLLDeNlVe~~~~sPIfV~~~sK~lL~~aiwNDT~FLas~~VMDYSLLVGvD 1526 (1598)
T KOG0230|consen 1447 YGRKVSRIFDLKGSLRNRYVPTTSGADEVLLDENLVEMMWTSPIYVGSHSKRLLRRAIWNDTSFLASINVMDYSLLVGVD 1526 (1598)
T ss_pred hccccceeeeccchhhhccCCCCCCCceEEecHHHHhhhhcCCeeehHhHHHHHHHHHhcchHHhhhcccceeeeEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEeEEEeeeccCchhhHHHHHhhhc--CCCCCCCcccChhHHHHHHHHHHhhhcccCCCCCCCCC
Q 000317 1588 SQRRELVCGIIDYLRQYTWDKHLETWVKSSL--VPKNVLPTVISPKDYKRRFRKFMSTHFLSVPDHWCSPE 1656 (1676)
Q Consensus 1588 ~~~~~l~vGIID~Lr~yt~~KklE~~vK~~~--~~~~~~~Tvv~P~~Y~~RF~~~m~~yf~~vpd~W~~~~ 1656 (1676)
+++++||+||||||||||||||||+|||..| .|+|+.||||+|++|++||++||++|||+|||+|++++
T Consensus 1527 ~e~~ELvlGIIDfiRtYTWDKkLESWVK~sGl~gpk~~~PTVVSP~qYK~RFRkAMd~YfL~VPD~Wtg~g 1597 (1598)
T KOG0230|consen 1527 DENNELVLGIIDFIRTYTWDKKLESWVKSSGLGGPKNKQPTVVSPEQYKTRFRKAMDTYFLMVPDQWTGLG 1597 (1598)
T ss_pred CCCCeEEEEehHhhhhhhhhhhhhhheeccccccCCCCCCceeCHHHHHHHHHHHHhheeeecCCcccCCC
Confidence 9999999999999999999999999999998 48899999999999999999999999999999999886
No 2
>cd00139 PIPKc Phosphatidylinositol phosphate kinases (PIPK) catalyze the phosphorylation of phosphatidylinositol phosphate on the fourth or fifth hydroxyl of the inositol ring, to form phosphatidylinositol bisphosphate. CD alignment includes type II phosphatidylinositol phosphate kinases (PIPKII-beta), type I andII PIPK (-alpha, -beta, and -gamma) kinases and related yeast Fab1p and Mss4p kinases. Signaling by phosphorylated species of phosphatidylinositol regulates secretion, vesicular trafficking, membrane translocation, cell adhesion, chemotaxis, DNA synthesis, and cell cycling. The catalytic core domains of PIPKs are structurally similar to PI3K, PI4K, and cAMP-dependent protein kinases (PKA), the dimerization region is a unique feature of the PIPKs.
Probab=100.00 E-value=2.9e-67 Score=611.65 Aligned_cols=256 Identities=42% Similarity=0.717 Sum_probs=238.8
Q ss_pred CCCceEEEEeCHHHHHHHHHhcCCChHHHHHHhcccCcCCCC-CCCcceeEEEecCCcEEEEecCHHHHHHHHHHHHHHH
Q 000317 1383 GKGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNWDAK-GGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYF 1461 (1676)
Q Consensus 1383 ~~~~~~~~~y~p~~F~~LR~~~gi~e~~yi~SLs~~~~~~~s-gGKSGs~F~~T~D~rFIiKtis~~E~~~fl~~lp~Yf 1461 (1676)
....|+|++|+|.+|++||++||+++++|+.||++|..|..+ ||||||+||+|.|+|||||||+++|+++|+++||+||
T Consensus 53 ~~~~f~fk~Y~P~vF~~lR~~~gi~~~dy~~Sl~~~~~~e~~s~GKSGs~F~~T~D~rfiIKti~~~E~~~l~~~Lp~Y~ 132 (313)
T cd00139 53 LSADFKFKDYCPEVFRALRELFGIDEADYLRSLCRSPLWELSSGGKSGSFFYKTLDDRFIIKTVSHSEIESLLKFLPNYY 132 (313)
T ss_pred CCccEEEEEeCHHHHHHHHHHcCCCHHHHHHHhcCCCCccCCCCCCCCCEEEEecCCcEEEEecCHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999865 9999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCC-CcchheeeeeEEEeeccCCCCcceeEEEEEEeeccCC-CccceeeeccCccccccccCC--CCCCccc
Q 000317 1462 KYMNESFDSGN-QTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLTFE-RNITRQYDLKGALHARYNTTV--DGSGDVL 1537 (1676)
Q Consensus 1462 ~y~~~~~~~~~-~TlL~Ki~Gly~i~~k~~~~g~~~k~~~iVMeNlf~~-~~i~~~yDLKGS~~~R~~~~~--~~~~~VL 1537 (1676)
+||.+ || +|||+||||+|+|++++ |...+++||||+|||++ ..|+++||||||+++|.+... .....||
T Consensus 133 ~~~~~----n~~~TLL~k~~Gl~~i~~~~---~~~~~~~fvVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~~~~~~~~vl 205 (313)
T cd00139 133 EYITQ----NPQNTLLPKFFGLYRVKVKS---GTGKKVDFLVMENLFYSRLKIHRKYDLKGSTRNREASKKEKQKENPVL 205 (313)
T ss_pred HHHHh----CCCCcchhhheEEEEEEEcC---CCCceEEEEEEecCCCCCccceEEEECCCCCCCCCcCcccccCCcccc
Confidence 99998 68 99999999999998764 23357899999999998 789999999999999999763 3467899
Q ss_pred cchhhhhhcCCCCceeCHHHHHHHHHHHHhhHhhhccCCccccceeEEeecCCceEEEeEEEeeeccCchhhHHHHHhhh
Q 000317 1538 LDQNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSLLVGVDSQRRELVCGIIDYLRQYTWDKHLETWVKSS 1617 (1676)
Q Consensus 1538 ~D~nf~~~~~~~pi~l~~~~k~~L~~~l~~Dt~FL~~~nvMDYSLLvGi~~~~~~l~vGIID~Lr~yt~~KklE~~vK~~ 1617 (1676)
||.||++.. ..+|+|+++.|+.|++||++||.||+++||||||||||||..+.+|++|||||||+|||+||+|+|+|++
T Consensus 206 KD~df~~~~-~~~i~l~~~~k~~l~~qL~~D~~FL~~~~iMDYSLLvGi~~~~~i~~~GIID~L~~y~~~Kk~E~~~K~~ 284 (313)
T cd00139 206 KDLNLLEMI-EQPLFVGEHSKKALLTQIKRDCEFLESLNIMDYSLLVGIHDIRLVLYLGIIDILRTYTWDKKLEHWVKSL 284 (313)
T ss_pred chhhhHhhc-CceEEeCHHHHHHHHHHHHHHHHHHHHCCCcccceEEEEecCCceEEEEEEeeeeeCCHHHHHHHHHHHh
Confidence 999999976 5699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccChhHHHHHHHHHHhhhcc
Q 000317 1618 LVPKNVLPTVISPKDYKRRFRKFMSTHFL 1646 (1676)
Q Consensus 1618 ~~~~~~~~Tvv~P~~Y~~RF~~~m~~yf~ 1646 (1676)
..+++..||||+|++|++||++||++||+
T Consensus 285 ~~~~~~~iS~v~P~~Y~~RF~~fi~~~f~ 313 (313)
T cd00139 285 GHDGGKTPSVVSPEQYAKRFREFMDKYFL 313 (313)
T ss_pred ccCCCCCcceECHHHHHHHHHHHHHHhcC
Confidence 76554679999999999999999999995
No 3
>COG5253 MSS4 Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-68 Score=618.74 Aligned_cols=359 Identities=32% Similarity=0.431 Sum_probs=291.9
Q ss_pred CCcceeeccCCcchhHHhhhhcccCCccccccccCCCCCCCccccccccccccccCCccccccccCCCCCCCCccccccc
Q 000317 1264 ENYMVSDYEGELSSIIACALAVLKEMPLSTVVFNEDSGRDGDMAVKTIDSLRSLTRIPTMASSLWSVNGSSDSDSIYASL 1343 (1676)
Q Consensus 1264 ~~~~v~V~edEpSSiIA~aL~s~ey~~~l~~~~~~~~~~~~~~~~k~~~s~~~~~~~~~~~ss~~s~~~~~~s~~~~~~~ 1343 (1676)
.+..|+++++||||.|||+|+++||+.++...+...... ....+ ... .+.+ +..+..
T Consensus 242 s~S~~iir~~~pss~~a~~~s~~d~~~k~mr~r~se~~D----e~~l~-----~~~----le~g----------h~n~~~ 298 (612)
T COG5253 242 SDSDVIIREDEPSSLIAFCLSTSDYRNKMMRLRDSETMD----ERLLN-----GMP----LEGG----------HRNPQE 298 (612)
T ss_pred CccccccccCCcchhhhccccchhHHHHHHhhhhhhcch----hhhcc-----ccc----cccc----------cccchh
Confidence 456678999999999999999999998775332111000 00000 000 0000 000000
Q ss_pred ccCcccccccccccccccccCCCCCCCCCceeeeeccccCCCceEEEEeCHHHHHHHHHhcCCChHHHHHHhcccCcCCC
Q 000317 1344 SISSEDSRFSSFDGLNLLESLIPPEVLSPEVSIGISKSLGKGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNWDA 1423 (1676)
Q Consensus 1344 s~~~~~~~~~~~d~~~~l~s~~~~e~~~~~v~~~~~~~~~~~~~~~~~y~p~~F~~LR~~~gi~e~~yi~SLs~~~~~~~ 1423 (1676)
+.. .. ...-+.++..+.+|.++. -++.+++|..|...|+|++|||++|+.||++||+++. |+.++++|..|..
T Consensus 299 syn--ml-tgirvtlsr~e~iM~~~t---dth~~e~~~eg~~~~s~K~y~~e~Fr~lR~l~g~~~a-lvsl~sryil~E~ 371 (612)
T COG5253 299 SYN--ML-TGIRVTLSRIEEIMIKKT---DTHLNEQFEEGLYEFSCKDYFPEVFRELRALCGCDEA-LVSLLSRYILWES 371 (612)
T ss_pred hhh--hh-hhhHHHHHHHHHHhcCCc---CccchhhccccceeeeHHhhCHHHHHHHHHHhCCcHH-HHHHHhhhheecc
Confidence 000 00 000011223444454431 2455678999999999999999999999999999885 9999999999999
Q ss_pred CCCCcceeEEEecCCcEEEEecCHHHHHHHHHHHHHHHHHHhhhcCCCCCcchheeeeeEEEeecc-CCCCcceeEEEEE
Q 000317 1424 KGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYFKYMNESFDSGNQTCLAKVLGIYQVTIRQ-PKSGKEMRHDLMV 1502 (1676)
Q Consensus 1424 sgGKSGs~F~~T~D~rFIiKtis~~E~~~fl~~lp~Yf~y~~~~~~~~~~TlL~Ki~Gly~i~~k~-~~~g~~~k~~~iV 1502 (1676)
.|||||||||||.|.|||||||++.|+..|..++-+|+.|+.. ||.|+||||||+|+|+++. ..+++..|+||||
T Consensus 372 ~~GKSGSff~~trD~kfIiKti~hsE~~~~r~~~~eY~~~V~~----np~T~l~ki~G~yrv~~~~s~~~~k~~K~~fiV 447 (612)
T COG5253 372 NGGKSGSFFLFTRDYKFIIKTISHSEHICFRPMIFEYYVHVLF----NPLTLLCKIFGFYRVKSRSSISSSKSRKIYFIV 447 (612)
T ss_pred CCCcccceEEEeccchhhhhhhhhhhHHHHHHHHHHHHHHHHc----CchHHHHHHhceeEEeccccccccccceeEEEE
Confidence 9999999999999999999999999996655555555555554 7889999999999999887 4567888999999
Q ss_pred EeeccCCCccceeeeccCccccccccCCCCCCccccchhhhhhcCCCCceeCHHHHHHHHHHHHhhHhhhccCCccccce
Q 000317 1503 MENLTFERNITRQYDLKGALHARYNTTVDGSGDVLLDQNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSL 1582 (1676)
Q Consensus 1503 MeNlf~~~~i~~~yDLKGS~~~R~~~~~~~~~~VL~D~nf~~~~~~~pi~l~~~~k~~L~~~l~~Dt~FL~~~nvMDYSL 1582 (1676)
||||||++.|+++|||||||+||++..+++...||+|+|.++.++++|+++....|+.|+.|||+|+.||+++|||||||
T Consensus 448 MeNlf~~~~i~~ifDLKGS~~Nr~ve~~gk~~s~l~~mndv~wI~es~~~~~g~~Kk~~~sqv~~Dv~fLsklniMDYSl 527 (612)
T COG5253 448 MENLFYPHGIHRIFDLKGSMRNRHVERTGKSMSVLLDMNDVEWIRESPKIVFGLKKKLLLSQVWNDVLFLSKLNIMDYSL 527 (612)
T ss_pred ecccCCCCCcceEEeccCchhhhhhhhhccccchhccchhHHHHHhCchhhhhHHHHHHHHHHHHHHHHHHHhCccceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecCCceEEEe-EEEeeec-cCchhhHHHHHhhhcC----CCCCCCcccChhHHHHHHHHHHhhhcccCCCCCCCCC
Q 000317 1583 LVGVDSQRRELVCG-IIDYLRQ-YTWDKHLETWVKSSLV----PKNVLPTVISPKDYKRRFRKFMSTHFLSVPDHWCSPE 1656 (1676)
Q Consensus 1583 LvGi~~~~~~l~vG-IID~Lr~-yt~~KklE~~vK~~~~----~~~~~~Tvv~P~~Y~~RF~~~m~~yf~~vpd~W~~~~ 1656 (1676)
|||||..+.+..|| |||++|+ |||||++|.|+|..+. -+...||+|+|.+|++||++||+.|++.+|+.|++.+
T Consensus 528 lVgi~~~~~~~~V~~I~d~i~t~~t~Dk~~~~gI~d~lt~~s~~k~~~~t~v~p~~y~nrf~~~~e~yi~~~p~~~~~~~ 607 (612)
T COG5253 528 LVGIDDEREEASVGLIIDFIRTRMTGDKKLESGIKDKLTVGSFTKRKEPTAVTPRQYKNRFRKAMEAYIDPFPDKKTQEG 607 (612)
T ss_pred EEEeccchhhcchHHHHhhhccccccceeeeeehhhhhccceeeecccceecCHHHHHHHHHHhHHHhhhcccchhhhcc
Confidence 99999999999999 9999999 9999999999999983 2346899999999999999999999999999999875
No 4
>smart00330 PIPKc Phosphatidylinositol phosphate kinases.
Probab=100.00 E-value=7.8e-66 Score=606.77 Aligned_cols=258 Identities=38% Similarity=0.622 Sum_probs=237.9
Q ss_pred ccccCCCceEEEEeCHHHHHHHHHhcCCChHHHHHHhcccCc-CCCCCCCcceeEEEecCCcEEEEecCHHHHHHHHHHH
Q 000317 1379 SKSLGKGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRN-WDAKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFA 1457 (1676)
Q Consensus 1379 ~~~~~~~~~~~~~y~p~~F~~LR~~~gi~e~~yi~SLs~~~~-~~~sgGKSGs~F~~T~D~rFIiKtis~~E~~~fl~~l 1457 (1676)
.++.....|+|++|+|++|++||+.+|+++++|++||++|.. |.++||||||+||+|.|+|||||||++.|++.|+++|
T Consensus 22 ~~~~~~~~~~~~~Y~P~~F~~lR~~~~i~~~~y~~Sl~~~~~~~~~s~GKSGs~F~~T~D~rfiiKti~~~E~~~l~~~l 101 (342)
T smart00330 22 TPSHGSADFKFKDYCPEVFRNLRELFGIDPADYLRSLCRSPPLELSSGGKSGSFFYLSLDDRFIIKTVSKSEIKSLLPML 101 (342)
T ss_pred cCCCCCccEEEEEeCHHHHHHHHHHcCCCHHHHHHHhCCCCccccCCCCCCCCEEEEecCCcEEEEecCHHHHHHHHHHH
Confidence 366778899999999999999999999999999999999986 9999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCcchheeeeeEEEeeccCCCCcceeEEEEEEeeccC-CCccceeeeccCccccccccC-CCCCCc
Q 000317 1458 LHYFKYMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLTF-ERNITRQYDLKGALHARYNTT-VDGSGD 1535 (1676)
Q Consensus 1458 p~Yf~y~~~~~~~~~~TlL~Ki~Gly~i~~k~~~~g~~~k~~~iVMeNlf~-~~~i~~~yDLKGS~~~R~~~~-~~~~~~ 1535 (1676)
|.||.||.+ ||+|||+||||+|+|+++ +|+..+++||||+|||+ +..|+++||||||+++|.+.. ......
T Consensus 102 p~Y~~~~~~----n~~SlL~ki~Gly~i~~~---~~~~~~~~fiVM~NlF~~~~~i~~~yDLKGS~~~R~~~~~~~~~~~ 174 (342)
T smart00330 102 PNYYEHIVQ----NPNTLLPKFFGLYRVKVK---GGTEKKIYFLVMENLFYSDLKVHRKYDLKGSTRGREADKKKVKELP 174 (342)
T ss_pred HHHHHHHHh----CCCcchhhhcEEEEEEEC---CCcceeEEEEEEecCCCCCCceeEEEECCCCCCCCCcCccccCCCC
Confidence 999999997 799999999999999874 34456799999999999 578999999999999999865 334678
Q ss_pred cccchhhhhhcCCCCceeCHHHHHHHHHHHHhhHhhhccCCccccceeEEeecCCc------------------------
Q 000317 1536 VLLDQNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSLLVGVDSQRR------------------------ 1591 (1676)
Q Consensus 1536 VL~D~nf~~~~~~~pi~l~~~~k~~L~~~l~~Dt~FL~~~nvMDYSLLvGi~~~~~------------------------ 1591 (1676)
||||.||++. ...+|+|+++.|+.|++||++||.||+++||||||||||||..+.
T Consensus 175 vlkD~df~~~-~~~~i~l~~~~k~~l~~ql~~D~~FL~~~~imDYSLLvGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (342)
T smart00330 175 VLKDLDLVEM-WNQPIYVDPLAKKALLKQIKRDCEFLESLKIMDYSLLVGIHDIERGQREEIELPPVYGSDESPSSESSN 253 (342)
T ss_pred cccccchhhc-cCCeEEECHHHHHHHHHHHHHHHHHHHHccchhhhhhhccccccccchhcccccccccccccccccccc
Confidence 9999999986 567999999999999999999999999999999999999986432
Q ss_pred ------------------------------------eEEEeEEEeeeccCchhhHHHHHhhhcCCCCCCCcccChhHHHH
Q 000317 1592 ------------------------------------ELVCGIIDYLRQYTWDKHLETWVKSSLVPKNVLPTVISPKDYKR 1635 (1676)
Q Consensus 1592 ------------------------------------~l~vGIID~Lr~yt~~KklE~~vK~~~~~~~~~~Tvv~P~~Y~~ 1635 (1676)
+|+||||||||+|||+||+|||+|++..+ +..||||+|++|++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vy~iGIID~Lq~Y~~~KklE~~~K~~~~~-~~~iS~V~P~~Y~~ 332 (342)
T smart00330 254 GGKAPDITGNLLVSNSPDGDGPFGGIPARAIRARRVVLYLGIIDILQTYTWDKKLEHWVKSIGHD-GKTISVVHPEQYAK 332 (342)
T ss_pred cCCCccccccccccccccccccccccccccccCCceEEEEEEEEEEEeCCHhHHHHHHHHHhccC-CCCcceECHHHHHH
Confidence 79999999999999999999999998654 45799999999999
Q ss_pred HHHHHHhhhc
Q 000317 1636 RFRKFMSTHF 1645 (1676)
Q Consensus 1636 RF~~~m~~yf 1645 (1676)
||++||++||
T Consensus 333 RF~~fi~~~F 342 (342)
T smart00330 333 RFRDFMDKYF 342 (342)
T ss_pred HHHHHHHhhC
Confidence 9999999998
No 5
>KOG0229 consensus Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=7.4e-58 Score=532.09 Aligned_cols=252 Identities=35% Similarity=0.524 Sum_probs=226.9
Q ss_pred CCceEEEEeCHHHHHHHHHhcCCChHHHHHHhcccCcCC--CCCCCcceeEEEecCCcEEEEecCHHHHHHHHHHHHHHH
Q 000317 1384 KGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNWD--AKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYF 1461 (1676)
Q Consensus 1384 ~~~~~~~~y~p~~F~~LR~~~gi~e~~yi~SLs~~~~~~--~sgGKSGs~F~~T~D~rFIiKtis~~E~~~fl~~lp~Yf 1461 (1676)
...|.+|+|||.+||.||++|||+++||+.||++..... +++|||||+||.|.|+|||||||.++|++.++++||.||
T Consensus 95 ~~~Fk~KdYcP~vFR~lRelFgId~~DYl~Slc~~~~l~e~sspGksGS~Fy~S~DdrFiIKTv~~~E~~~l~~mLp~Yy 174 (420)
T KOG0229|consen 95 SSDFKFKDYCPMVFRNLRELFGIDPADYLLSLCGNPPLRELSSPGKSGSFFYLSYDDRFIIKTVRKSEVKVLLKMLPGYY 174 (420)
T ss_pred ccccchhhcChHHHHHHHHHhCCChHHHHHHHhcchhhhhccCCCCccceEEEecCceEEEEeccHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999877655 677999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCcchheeeeeEEEeeccCCCCcceeEEEEEEeeccCCC-ccceeeeccCccccccccCCC--CCCcccc
Q 000317 1462 KYMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLTFER-NITRQYDLKGALHARYNTTVD--GSGDVLL 1538 (1676)
Q Consensus 1462 ~y~~~~~~~~~~TlL~Ki~Gly~i~~k~~~~g~~~k~~~iVMeNlf~~~-~i~~~yDLKGS~~~R~~~~~~--~~~~VL~ 1538 (1676)
+|+.++ ++.|||+||||+|+|+.. +|+ +++||||+|||..+ .|+++||||||+++|.+...+ ++..+||
T Consensus 175 ~~v~~~---~~~TLl~kf~Gly~vk~~---gg~--k~yfvVM~Nlf~~~~~iH~kyDLKGSt~~R~askke~~k~~pTlK 246 (420)
T KOG0229|consen 175 QHVVEQ---NNRTLLPKFFGLYRVKPD---GGK--KIYFVVMNNLFPSRLKVHRKYDLKGSTVGREASKKEKIKELPTLK 246 (420)
T ss_pred HHHHcc---CCceeehhhceeEEEeeC---CCc--eEEEEEecccCCCccceeEEeecCCCcccccccchhhccCCCccc
Confidence 999984 666999999999999763 564 57899999999985 899999999999999987633 4678999
Q ss_pred chhhhhhcCCCCceeCHHHHHHHHHHHHhhHhhhccCCccccceeEEeecC-----------------------------
Q 000317 1539 DQNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSLLVGVDSQ----------------------------- 1589 (1676)
Q Consensus 1539 D~nf~~~~~~~pi~l~~~~k~~L~~~l~~Dt~FL~~~nvMDYSLLvGi~~~----------------------------- 1589 (1676)
|.||++. ...|+|++..++.|++||++||.||++++|||||||||||..
T Consensus 247 DlDf~~~--~~~~~l~~~~~~~l~~ql~~Dce~Le~~~IMDYSLLvGiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (420)
T KOG0229|consen 247 DLDFLNE--GQKLYLGKEAKKALLKQLKRDCEFLESLKIMDYSLLVGIHDRDRGQAEKEELEPQEDESEREQRLSSASPE 324 (420)
T ss_pred cchhhcc--CceEecCHHHHHHHHHHHHHHHHHHHHhcchhhhheeeeeeccccccchhhcCCCCCcccccccccccccc
Confidence 9999983 347999999999999999999999999999999999999731
Q ss_pred ----------------------------------------CceEEEeEEEeeeccCchhhHHHHHhhhcCCCCCCCcccC
Q 000317 1590 ----------------------------------------RRELVCGIIDYLRQYTWDKHLETWVKSSLVPKNVLPTVIS 1629 (1676)
Q Consensus 1590 ----------------------------------------~~~l~vGIID~Lr~yt~~KklE~~vK~~~~~~~~~~Tvv~ 1629 (1676)
+.+||+||||+||.|+..||+||.+|++..+. ..+|+|+
T Consensus 325 ~~~~~~~~~~i~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~y~GIIDILq~Y~~~KK~EH~~Ksl~~d~-~tIS~v~ 403 (420)
T KOG0229|consen 325 DVLTSTASPSIQLGANMPARAGEERVDRMEYAPAQNSGGYDVVLYIGIIDILQDYDIKKKLEHAYKSLQHDP-DTISAVD 403 (420)
T ss_pred ccCCCCCcccccCCCCCCCccccccccccccccccccCcceEEEEEEeehhhhhcchhhHHHHHHhhhccCC-ceeeccC
Confidence 12489999999999999999999999986443 5689999
Q ss_pred hhHHHHHHHHHHhhhcc
Q 000317 1630 PKDYKRRFRKFMSTHFL 1646 (1676)
Q Consensus 1630 P~~Y~~RF~~~m~~yf~ 1646 (1676)
|++|++||++||.+.|.
T Consensus 404 P~~Ys~RF~dFi~~~~~ 420 (420)
T KOG0229|consen 404 PKFYAKRFLDFISNIFF 420 (420)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 99999999999999873
No 6
>PF01504 PIP5K: Phosphatidylinositol-4-phosphate 5-Kinase; InterPro: IPR002498 This entry represents a conserved region from the common kinase core found in the type I phosphatidylinositol-4-phosphate 5-kinase (PIP5K) family as described in []. This region is found in I, II and III phosphatidylinositol-4-phosphate 5-kinases (PIP5K enzymes). PIP5K catalyses the formation of phosphoinositol-4,5-bisphosphate via the phosphorylation of phosphatidylinositol-4-phosphate a precursor in the phosphinositide signalling pathway.; GO: 0016307 phosphatidylinositol phosphate kinase activity, 0046488 phosphatidylinositol metabolic process; PDB: 1BO1_A 2GK9_C 2YBX_B.
Probab=100.00 E-value=6.2e-56 Score=506.23 Aligned_cols=222 Identities=36% Similarity=0.583 Sum_probs=156.0
Q ss_pred Hhccc--CcCCCCCCCcceeEEEecCCcEEEEecCHHHHHHHHHHHHHHHHHHhhhcCCCCCcchheeeeeEEEeeccCC
Q 000317 1414 SLSRC--RNWDAKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYFKYMNESFDSGNQTCLAKVLGIYQVTIRQPK 1491 (1676)
Q Consensus 1414 SLs~~--~~~~~sgGKSGs~F~~T~D~rFIiKtis~~E~~~fl~~lp~Yf~y~~~~~~~~~~TlL~Ki~Gly~i~~k~~~ 1491 (1676)
||+.+ ..|..++|||||+||+|.|+|||||||+++|+++|+++||+||+||.+ +|.|||+||||+|+|...
T Consensus 2 sl~~~~~~~~~~s~GKSGs~F~~T~D~kfiiKti~~~E~~~l~~~lp~Y~~~~~~----~~~SlL~r~~Gl~~i~~~--- 74 (252)
T PF01504_consen 2 SLCNLSSLSEKSSGGKSGSFFFFTSDGKFIIKTISKSEFKFLLKILPAYFEHMSE----NPNSLLPRFYGLYSIKKS--- 74 (252)
T ss_dssp ---------ES---SSSSS-EEE-TTSSEEEEEE-HHHHHHHHHHHHHHHHHHHH----TTTSSS--EEEEEEE-EE---
T ss_pred CccccccccccCCCCCccCEEEEeCCCCEEEEeCCHHHHHHHHHHHHHHHHHHHh----CcCchHHHHHHHheeccc---
Confidence 66543 568899999999999999999999999999999999999999999998 788999999999999432
Q ss_pred CCcceeEEEEEEeeccCC-CccceeeeccCccccccccCC--CCCCccccchhhhhhcCCCCceeCHHHHHHHHHHHHhh
Q 000317 1492 SGKEMRHDLMVMENLTFE-RNITRQYDLKGALHARYNTTV--DGSGDVLLDQNFVNDMNSSPLYVSNTAKRILQRAVWND 1568 (1676)
Q Consensus 1492 ~g~~~k~~~iVMeNlf~~-~~i~~~yDLKGS~~~R~~~~~--~~~~~VL~D~nf~~~~~~~pi~l~~~~k~~L~~~l~~D 1568 (1676)
+| ..+++||||+|+|++ ..|+++||||||+++|.+... .....|+||.||.+.. .+|+|+++.++.|++||++|
T Consensus 75 ~~-~~~~~fvVM~N~f~~~~~i~~~yDLKGs~~~R~~~~~~~~~~~~~lkD~df~~~~--~~i~l~~~~~~~l~~ql~~D 151 (252)
T PF01504_consen 75 NG-KEKIYFVVMENLFYTPRNIHERYDLKGSTVGRKAKKKDREQTEPVLKDLDFIESK--RKIHLGPEQKEELLKQLERD 151 (252)
T ss_dssp TT--EEEEEEEEE-SS-SSS--SEEEEE--SSSSS-S-CHHHCSSS-EEEHHHHHHTT----SBS-SCHHHHHHHHHHHH
T ss_pred CC-ceeEEEEEECCCccCCcccceEEecCCcccCCCCCccccccccceeecccccccC--cEEEeChHHHHHHHHHHHHH
Confidence 34 457899999999998 789999999999999998752 2357899999999864 59999999999999999999
Q ss_pred HhhhccCCccccceeEEee------------------------cCCceEEEeEEEeeeccCchhhHHHHHhhhcCCCCCC
Q 000317 1569 TTFLNSIDVMDYSLLVGVD------------------------SQRRELVCGIIDYLRQYTWDKHLETWVKSSLVPKNVL 1624 (1676)
Q Consensus 1569 t~FL~~~nvMDYSLLvGi~------------------------~~~~~l~vGIID~Lr~yt~~KklE~~vK~~~~~~~~~ 1624 (1676)
|.||+++|||||||||||+ ..+.+|++|||||||+|||.|++|+|+|+++..++..
T Consensus 152 ~~FL~~~~imDYSLLvGi~~~~~~~~~~~~~~~~~~~~~~~s~~~~~vy~~GIID~L~~y~~~K~~E~~~K~~~~~~~~~ 231 (252)
T PF01504_consen 152 TEFLSSHNIMDYSLLVGIHNRDSNEEQENKSSFPSYAGGIMSEDGNEVYYLGIIDILQEYNWKKKLEHFFKSLIKCDGQD 231 (252)
T ss_dssp HHHHHHTTEES-EEEEEEEH---HHHHHH-H---TTTTTTCCCETTEEEEEEEE-S-EETT------------------S
T ss_pred HHHHHhccccccceeEeeeeccccccccccccccccccceeecCCCeEEEEEEehheeeccHHHHHHHHHHHHhhcCCCC
Confidence 9999999999999999999 4568899999999999999999999999995333457
Q ss_pred CcccChhHHHHHHHHHHhhhc
Q 000317 1625 PTVISPKDYKRRFRKFMSTHF 1645 (1676)
Q Consensus 1625 ~Tvv~P~~Y~~RF~~~m~~yf 1645 (1676)
+|||+|++|++||++||++||
T Consensus 232 iS~v~P~~Y~~RF~~~i~~~f 252 (252)
T PF01504_consen 232 ISCVPPEEYAERFIKFIESIF 252 (252)
T ss_dssp SS---HHHHHHHHHHHHHHH-
T ss_pred CcccCHHHHHHHHHHHHHHhC
Confidence 899999999999999999997
No 7
>PLN03185 phosphatidylinositol phosphate kinase; Provisional
Probab=100.00 E-value=1.3e-54 Score=545.57 Aligned_cols=248 Identities=28% Similarity=0.433 Sum_probs=221.4
Q ss_pred CCceEEEEeCHHHHHHHHHhcCCChHHHHHHhcccCcC--CCCCCCcceeEEEecCCcEEEEecCHHHHHHHHHHHHHHH
Q 000317 1384 KGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNW--DAKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYF 1461 (1676)
Q Consensus 1384 ~~~~~~~~y~p~~F~~LR~~~gi~e~~yi~SLs~~~~~--~~sgGKSGs~F~~T~D~rFIiKtis~~E~~~fl~~lp~Yf 1461 (1676)
...|+|++|+|.+|+.||++|||++++|+.||+.+..| .+++|||||+||+|.|+|||||||+++|+++|++|||+||
T Consensus 401 ~~~fkfkdY~P~vFr~LR~~fgId~~dyl~Sl~~~~~l~el~S~GKSGS~Fy~S~D~rFiIKTI~k~E~~~l~~iLp~Y~ 480 (765)
T PLN03185 401 SEDFKWKDYCPMVFRNLREMFKIDAADYMMSICGNDALRELSSPGKSGSVFFLSQDDRFMIKTLRKSEVKVLLRMLPDYH 480 (765)
T ss_pred cCceEEEEECHHHHHHHHHHhCCCHHHHHHhccCCccchhccCCCCcCCeEEEecCCcEEEEecCHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999999999876544 4789999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCcchheeeeeEEEeeccCCCCcceeEEEEEEeeccCC-CccceeeeccCccccccccCCC-CCCccccc
Q 000317 1462 KYMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLTFE-RNITRQYDLKGALHARYNTTVD-GSGDVLLD 1539 (1676)
Q Consensus 1462 ~y~~~~~~~~~~TlL~Ki~Gly~i~~k~~~~g~~~k~~~iVMeNlf~~-~~i~~~yDLKGS~~~R~~~~~~-~~~~VL~D 1539 (1676)
+||.. +|+|||+||||||+|++. +|+ +++||||+|||++ ..|+++||||||+++|.+.... ..+.||||
T Consensus 481 ~hv~~----n~~TLL~kf~Gl~~i~~~---~g~--k~~fvVM~NlF~~~~~I~~~yDLKGSt~~R~~~k~~~~~~~tlKD 551 (765)
T PLN03185 481 HHVKT----YENTLITKFFGLHRIKPS---SGQ--KFRFVVMGNMFCTELRIHRRFDLKGSSLGRSADKVEIDENTTLKD 551 (765)
T ss_pred HHHhh----CCCcchhhheEEEEEEeC---CCc--EEEEEEEecCCCCCCccceEEECCCCCCCCCCccccccCCCeeee
Confidence 99987 799999999999999653 343 5789999999997 5899999999999999985432 35679999
Q ss_pred hhhhhhcCCCCceeCHHHHHHHHHHHHhhHhhhccCCccccceeEEeecCC-----------------------------
Q 000317 1540 QNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSLLVGVDSQR----------------------------- 1590 (1676)
Q Consensus 1540 ~nf~~~~~~~pi~l~~~~k~~L~~~l~~Dt~FL~~~nvMDYSLLvGi~~~~----------------------------- 1590 (1676)
.||.. +|+|+++.|+.|++||++||.||+++||||||||||||...
T Consensus 552 lD~~~-----~~~l~~~~k~~l~~qL~~D~~FL~~~~IMDYSLLvGIh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (765)
T PLN03185 552 LDLNY-----SFYLEPSWRDALLRQIEIDSKFLEAQRIMDYSLLLGVHFRAPQHLRSLLPYSRSITADGLEVVAEEDTIE 626 (765)
T ss_pred cCcCc-----eEeeCHHHHHHHHHHHHHHHHHHhHCcCeecceEEEEEecChhhhccccccccccccccccccccccccc
Confidence 99833 68999999999999999999999999999999999998210
Q ss_pred --------------------------------------------------------------------------------
Q 000317 1591 -------------------------------------------------------------------------------- 1590 (1676)
Q Consensus 1591 -------------------------------------------------------------------------------- 1590 (1676)
T Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~mpara~~~~~~~~~~~~~~~ 706 (765)
T PLN03185 627 DEELSYPEGLVLVPRGADDGSTVPGPHIRGSRLRASAAGDEEVDLLLPGTARLQIQLGVNMPARAERIPGREDKEKQSFH 706 (765)
T ss_pred ccccccccccccccccccccccCCCcccccccccccccCchhhhhccccccccchhhcccCchhhhcccccccccccccC
Confidence
Q ss_pred ----ceEEEeEEEeeeccCchhhHHHHHhhhcCCCCCCCcccChhHHHHHHHHHHhhhcc
Q 000317 1591 ----RELVCGIIDYLRQYTWDKHLETWVKSSLVPKNVLPTVISPKDYKRRFRKFMSTHFL 1646 (1676)
Q Consensus 1591 ----~~l~vGIID~Lr~yt~~KklE~~vK~~~~~~~~~~Tvv~P~~Y~~RF~~~m~~yf~ 1646 (1676)
-+||+|||||||.|+..|||||++|++.... ..+|+|+|+.|++||++||.+.|+
T Consensus 707 e~~d~~~~~giidilq~y~~~k~~eh~~k~~~~~~-~~is~v~p~~y~~rf~~f~~~~f~ 765 (765)
T PLN03185 707 EVYDVVLYLGIIDILQEYNMSKKIEHAYKSLQFDS-LSISAVDPTFYSKRFLEFIQKVFP 765 (765)
T ss_pred cccceEEEEEEEEeecccchhHHHHHHHhhhccCC-CceeccChHHHHHHHHHHHHhhcC
Confidence 1378999999999999999999999986443 368999999999999999999984
No 8
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=100.00 E-value=2.4e-47 Score=438.25 Aligned_cols=255 Identities=49% Similarity=0.828 Sum_probs=237.4
Q ss_pred HHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCC
Q 000317 265 AIVSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAH 344 (1676)
Q Consensus 265 ~ll~qLL~~~~~sl~sK~~~~W~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GGs~~DS~vI~GVV~~Knvah 344 (1676)
+++.|||.++++. ..+.|.+.|++|+++|+..+.++...++.+|+.+||+|+|++||++.||++|+|+||+|+++|
T Consensus 2 ~~~~~~~~~~~~~----~~~~~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~~ 77 (261)
T cd03334 2 ALLAQLLKDEGIS----NDESWLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAH 77 (261)
T ss_pred hHHHHHHHhcCCC----ChHHHHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHcEEEeeEEEeCCCCC
Confidence 6789999999993 567899999999999999997654334579997789999999999999999999999999999
Q ss_pred CCCCccccCCcEEEEeeeccccccc--cccHHH-HHHHHHHHHHHHhhHhcCCCeEEEecccccHHHHHHHHHcCCeEee
Q 000317 345 KHMPTEYKNPRLLLIRGVLGLSSSG--LSSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVF 421 (1676)
Q Consensus 345 k~M~~~i~nPRILLL~~~LEy~r~e--l~Sle~-i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L~~~gItvv~ 421 (1676)
++||++++||||+||+|+|||++++ +.+++. +++|++|++++|++|+++|||||||+|+|+++|++||.++||++++
T Consensus 78 ~~m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v~ 157 (261)
T cd03334 78 KRMPSKIKNPRILLLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLVL 157 (261)
T ss_pred ccCCcccCCCcEEEEeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEEE
Confidence 9999999999999999999999876 778999 9999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhCCceecccc--CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEEEeCCC
Q 000317 422 DMKLHRLERVARCTGSPILSSGS--LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLLKGSN 499 (1676)
Q Consensus 422 nVK~~~LeRIAR~TGA~IvsSid--L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~gcTILLRG~s 499 (1676)
+|++.+|+|||+||||.|+++++ ++++.||+|+.|++++++.+ .+++++|+||+||+.+.+|||+|||++
T Consensus 158 ~v~~~dl~rIa~~tGa~ii~~i~~~~~~~~lG~~~~v~~~~ig~~--------~~~~~~~~~~~~~~~~~~~TIlLRG~t 229 (261)
T cd03334 158 NVKPSVLERISRCTGADIISSMDDLLTSPKLGTCESFRVRTYVEE--------HGRSKTLMFFEGCPKELGCTILLRGGD 229 (261)
T ss_pred ecCHHHHHHHHHHhCCEEecChhhhcCcccCcCcceEEEEEecCc--------CCCceeEEEEecCCCCceeEEEEECCC
Confidence 99999999999999999999954 88999999999999998642 124589999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCeEeecCC
Q 000317 500 SDELKRIKSVVQCAVVMAYHLILETSFLVDQR 531 (1676)
Q Consensus 500 ~~~L~evKrvl~dav~vv~~l~lE~s~l~ggG 531 (1676)
.++|+++||+++||++++||+++|.+++.|.|
T Consensus 230 ~~~lde~eR~i~Dal~v~~~~~le~~~~~~~~ 261 (261)
T cd03334 230 LEELKKVKRVVEFMVFAAYHLKLETSFLADEF 261 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhccC
Confidence 99999999999999999999999999998864
No 9
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.2e-40 Score=417.86 Aligned_cols=256 Identities=24% Similarity=0.425 Sum_probs=240.4
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHHhhcCCCCCC-CCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCC
Q 000317 268 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVD-GKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 346 (1676)
Q Consensus 268 ~qLL~~~~~sl~sK~~~~W~~~ls~L~~eAv~~V~pd~~~-g~~mDi~~yVKIKKI~GGs~~DS~vI~GVV~~Knvahk~ 346 (1676)
..|++.+.+++++|....|.+.|++|+++|+..|.++... +..+|+.+||+|+|++||++.||++|+|++|+|+++|++
T Consensus 145 ~~l~~i~~t~l~sk~~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~~ 224 (525)
T TIGR02344 145 AAMLKLIQSCIGTKFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHPK 224 (525)
T ss_pred HHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhcCcccceEEecccCCCC
Confidence 3477788889999999999999999999999999886422 347899889999999999999999999999999999999
Q ss_pred CCccccCCcEEEEeeeccccccc------c---ccHHH-HHHHHHHHHHHHhhHhcCCCeEEEecccccHHHHHHHHHcC
Q 000317 347 MPTEYKNPRLLLIRGVLGLSSSG------L---SSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 416 (1676)
Q Consensus 347 M~~~i~nPRILLL~~~LEy~r~e------l---~Sle~-i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L~~~g 416 (1676)
|++++.||||||++++|||++.+ + .++++ +++|++|++++|++|++.+|+||+++++|+++|+++|.++|
T Consensus 225 m~~~~~n~kIlll~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~ 304 (525)
T TIGR02344 225 MRRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKAN 304 (525)
T ss_pred CccccCCCCEEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCC
Confidence 99999999999999999999876 2 45777 89999999999999999999999999999999999999999
Q ss_pred CeEeecCCHHHHHHHHHHhCCceecccc-CCCCCccc-cceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEE
Q 000317 417 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKH-CDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVL 494 (1676)
Q Consensus 417 Itvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~-C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~gcTIL 494 (1676)
|++++++++.+|+|||++|||+++++++ +.+..||+ |+.|++++++. ++|++|+||..+.+|||+
T Consensus 305 I~av~~v~~~~LerIa~~tGa~ii~~l~~l~~~~lG~~~~~v~~~~ig~-------------~~~~~~~g~~~~~~~TIl 371 (525)
T TIGR02344 305 ISAIRRVRKTDNNRIARACGATIVNRPEELRESDVGTGCGLFEVKKIGD-------------EYFTFFTECKDPKACTIL 371 (525)
T ss_pred ceEEecCCHHHHHHHHHHhCCeEecchhhCCHhhcCCcCCEEEEEEECC-------------eEEEEEEcCCCCCEEEEE
Confidence 9999999999999999999999999999 99899999 99999999753 689999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000317 495 LKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 536 (1676)
Q Consensus 495 LRG~s~~~L~evKrvl~dav~vv~~l~lE~s~l~ggGa~~~~ 536 (1676)
|||++..+|+|+||+++||+++++++++++.+|+||||++..
T Consensus 372 LrG~t~~~l~E~er~l~DAl~~vk~~~~~~~vvpGGGa~e~~ 413 (525)
T TIGR02344 372 LRGASKDVLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMA 413 (525)
T ss_pred EEcCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCHHHHH
Confidence 999999999999999999999999999999999999999875
No 10
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=3.4e-38 Score=395.10 Aligned_cols=255 Identities=25% Similarity=0.368 Sum_probs=237.8
Q ss_pred HHHHHhhcccCCCCCc-hhHHHHHHHHHHHHHhhcCCCCCCC-CccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCC
Q 000317 268 SQLLKSVGVVSSGKDG-ESWVDIVTSLSWEAASSLRPGSVDG-KSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHK 345 (1676)
Q Consensus 268 ~qLL~~~~~sl~sK~~-~~W~~~ls~L~~eAv~~V~pd~~~g-~~mDi~~yVKIKKI~GGs~~DS~vI~GVV~~Knvahk 345 (1676)
..|++.+.+++++|.. +.|.+.|++|+++|+..+.+....| -.+|+ ++|+|+|++||++.||++++|++|++++.|+
T Consensus 145 ~~L~~ia~tsl~sk~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~-~~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~ 223 (519)
T TIGR02339 145 DLLKKVAETSLTGKASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDL-DNIKIEKKTGGSIDDTELVEGIVVDKEPVHP 223 (519)
T ss_pred HHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhhhccCCCcccCH-HHeEEEEccCcChhcceeEeeEEEecCCCCC
Confidence 5688899999999988 7999999999999999997532123 25888 5999999999999999999999999999999
Q ss_pred CCCccccCCcEEEEeeeccccccc------cc---cHHH-HHHHHHHHHHHHhhHhcCCCeEEEecccccHHHHHHHHHc
Q 000317 346 HMPTEYKNPRLLLIRGVLGLSSSG------LS---SFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEK 415 (1676)
Q Consensus 346 ~M~~~i~nPRILLL~~~LEy~r~e------l~---Sle~-i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L~~~ 415 (1676)
+|+++++||||+|++++|||++++ +. ++.+ +++|++|++++|++|+..||+|||++++|++.|++||.++
T Consensus 224 ~m~~~i~n~kIlll~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~ 303 (519)
T TIGR02339 224 GMPKRVKNAKIALLDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKA 303 (519)
T ss_pred CCccccCCCcEEEEeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHC
Confidence 999999999999999999999886 33 4667 8999999999999999999999999999999999999999
Q ss_pred CCeEeecCCHHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEE
Q 000317 416 GMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVL 494 (1676)
Q Consensus 416 gItvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~gcTIL 494 (1676)
||++++++++.+|+|||++|||+++++++ +.+..||+|+.|++++++. ++|++|+||..+.+|||+
T Consensus 304 gI~~v~~v~~~~L~rIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TI~ 370 (519)
T TIGR02339 304 GILAVRRVKKSDIEKLARATGAKIVSSIKEITESDLGYAGLVEERKVGD-------------DKMTFVEGCKNPKAVTIL 370 (519)
T ss_pred CCEEEecCCHHHHHHHHHHhCCEEeCchhhCChhhccCCceEEEEEECC-------------eEEEEEEcCCCCCEEEEE
Confidence 99999999999999999999999999999 9988999999999999853 689999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000317 495 LKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 536 (1676)
Q Consensus 495 LRG~s~~~L~evKrvl~dav~vv~~l~lE~s~l~ggGa~~~~ 536 (1676)
|||++..+|+|+||+++||++++++++.+.++|+||||++..
T Consensus 371 lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGGa~e~~ 412 (519)
T TIGR02339 371 LRGGTEHVVDELERSIQDALHVVASALEDGKVVAGGGAVEIE 412 (519)
T ss_pred EECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEeeCCCHHHHH
Confidence 999999999999999999999999999999999999999985
No 11
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-39 Score=374.59 Aligned_cols=254 Identities=23% Similarity=0.435 Sum_probs=240.8
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCCC
Q 000317 268 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 347 (1676)
Q Consensus 268 ~qLL~~~~~sl~sK~~~~W~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GGs~~DS~vI~GVV~~Knvahk~M 347 (1676)
.+++...+.+..+|....|.+.++.|+++|+..|..+ .|..+|+..|+||.|||||.+.+|++++||.+.|.+.|++|
T Consensus 148 ~km~~vi~~~v~tk~~~~~~~~~~~lal~avk~V~~~--~g~e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hpkm 225 (527)
T KOG0364|consen 148 AKMLRVINSSVGTKFNSRWSDLICNLALDAVKTVGVE--NGREIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHPKM 225 (527)
T ss_pred HHHHhhhhhhhhhhhhhhhcchhhhHHHHHHHHhhhc--cCceechhhhccccccCcccccccceecceeeccccCcHHH
Confidence 4577788888899999999999999999999999876 45589999999999999999999999999999999999999
Q ss_pred CccccCCcEEEEeeeccccccc---------cccHHH-HHHHHHHHHHHHhhHhcCCCeEEEecccccHHHHHHHHHcCC
Q 000317 348 PTEYKNPRLLLIRGVLGLSSSG---------LSSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGM 417 (1676)
Q Consensus 348 ~~~i~nPRILLL~~~LEy~r~e---------l~Sle~-i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L~~~gI 417 (1676)
.+.|+||||.||+|||||.+-+ -.++.. ++-|+||++.++.+|+.++||||++||+||++|++||.++||
T Consensus 226 rr~IenprivLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~i 305 (527)
T KOG0364|consen 226 RRAIENPRIVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANI 305 (527)
T ss_pred HHHhhcCcEEEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCc
Confidence 9999999999999999998765 246778 999999999999999999999999999999999999999999
Q ss_pred eEeecCCHHHHHHHHHHhCCceecccc-CCCCCcc-ccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEEE
Q 000317 418 TLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLK-HCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLL 495 (1676)
Q Consensus 418 tvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG-~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~gcTILL 495 (1676)
++++++++.+..||||++||.|++..+ |.+.+.| -|+.|+++++++ ..|.||..|..++.|||||
T Consensus 306 T~~rr~rKtDn~ria~acga~iv~rpedl~e~dvGt~agLf~~kK~gd-------------eyf~f~~~Ck~pkaCtill 372 (527)
T KOG0364|consen 306 TAIRRLRKTDNNRIARACGARIVNRPEDLPERDVGTGAGLFEVKKIGD-------------EYFTFFTDCKEPKACTILL 372 (527)
T ss_pred hhhhhhhccccchhhhhcCceeccChhhCchhccCcccceeeeeccCc-------------hhhhhhhhcCCCcceEEEe
Confidence 999999999999999999999999999 9999999 589999999876 5899999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000317 496 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 536 (1676)
Q Consensus 496 RG~s~~~L~evKrvl~dav~vv~~l~lE~s~l~ggGa~~~~ 536 (1676)
||++.++|.|++|.++||+.+++|+..++++++||||+++.
T Consensus 373 rg~skdil~e~ernlqda~~varn~ii~PklvPGGGAtEMA 413 (527)
T KOG0364|consen 373 RGPSKDILNEVERNLQDAMGVARNVIINPKLVPGGGATEMA 413 (527)
T ss_pred ccCchhHHHHHHHHhhhHHHHHHHhccCCcccCCccHHHHH
Confidence 99999999999999999999999999999999999999985
No 12
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=8e-38 Score=391.85 Aligned_cols=255 Identities=24% Similarity=0.370 Sum_probs=238.3
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCCC
Q 000317 268 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 347 (1676)
Q Consensus 268 ~qLL~~~~~sl~sK~~~~W~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GGs~~DS~vI~GVV~~Knvahk~M 347 (1676)
..|++.+.+++++|....|.+.|++|+++|+..+.++......+|+ ++|+|+|++||++.||++++|+||++++.|+.|
T Consensus 144 ~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~-~~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~~m 222 (517)
T cd03343 144 DTLRKIAKTSLTGKGAEAAKDKLADLVVDAVLQVAEKRDGKYVVDL-DNIKIEKKTGGSVDDTELIRGIVIDKEVVHPGM 222 (517)
T ss_pred HHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhhhccCCCccccH-HHeeEEeecCcCHHHcceeeeEEEeccCCCCCC
Confidence 4578888999999999999999999999999999764222236888 599999999999999999999999999999999
Q ss_pred CccccCCcEEEEeeeccccccc------ccc---HHH-HHHHHHHHHHHHhhHhcCCCeEEEecccccHHHHHHHHHcCC
Q 000317 348 PTEYKNPRLLLIRGVLGLSSSG------LSS---FKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGM 417 (1676)
Q Consensus 348 ~~~i~nPRILLL~~~LEy~r~e------l~S---le~-i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L~~~gI 417 (1676)
++.++||||+|++++|||++.+ +.+ +.+ +++|++|++++|++|+..|++|||++++|++.|++||.++||
T Consensus 223 ~~~~~n~~Illl~~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~gI 302 (517)
T cd03343 223 PKRVENAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGI 302 (517)
T ss_pred ccccCCCcEEEEeccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCc
Confidence 9999999999999999999886 343 667 899999999999999999999999999999999999999999
Q ss_pred eEeecCCHHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEEEe
Q 000317 418 TLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLLK 496 (1676)
Q Consensus 418 tvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~gcTILLR 496 (1676)
++++++++.+|+|||++|||+++++++ +++..||+|+.|++++++. ++|++|+||..+.+|||+||
T Consensus 303 ~~v~~v~~~~l~~Ia~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TI~lr 369 (517)
T cd03343 303 LAVRRVKKSDMEKLARATGAKIVTNIDDLTPEDLGEAELVEERKVGD-------------DKMVFVEGCKNPKAVTILLR 369 (517)
T ss_pred EEEEeCCHHHHHHHHHHhCCEEecchhhCChhhCCccceEEEEEECC-------------eEEEEEEcCCCCceEEEEEE
Confidence 999999999999999999999999999 9989999999999999753 68999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000317 497 GSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 536 (1676)
Q Consensus 497 G~s~~~L~evKrvl~dav~vv~~l~lE~s~l~ggGa~~~~ 536 (1676)
|++..+|+|+||+++||++++++++.++++++|||+++..
T Consensus 370 G~t~~~l~e~~~~l~Dal~~~~~~~~~~~vvpGGG~~e~~ 409 (517)
T cd03343 370 GGTEHVVDELERALEDALRVVADALEDGKVVAGGGAVEIE 409 (517)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCHHHHH
Confidence 9999999999999999999999999999999999999875
No 13
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.3e-37 Score=390.22 Aligned_cols=256 Identities=19% Similarity=0.299 Sum_probs=237.4
Q ss_pred HHHHHHhhcccCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCC
Q 000317 267 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 346 (1676)
Q Consensus 267 l~qLL~~~~~sl~sK~~~~W~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GGs~~DS~vI~GVV~~Knvahk~ 346 (1676)
...|++.+.+++++|....|.+.|+.++++|+..+... ++..+|+ ++|+|+|++||++.||++++|++|+++++|+.
T Consensus 153 ~~~l~~ia~tsl~sk~~~~~~~~~s~i~v~av~~i~~~--~~~~~d~-~~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~~ 229 (526)
T cd03339 153 KEPLIQTAMTSLGSKIVSRCHRQFAEIAVDAVLSVADL--ERKDVNF-ELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQ 229 (526)
T ss_pred HHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhc--CCCccch-HHeEEEEecCcCHHHcceeeeEEEecccCCCC
Confidence 34588889999999999999999999999999998642 2235677 58999999999999999999999999999999
Q ss_pred CCccccCCcEEEEeeeccccccc------cc---cHHH-HHHHHHHHHHHHhhHhcCCCeEEEecccccHHHHHHHHHcC
Q 000317 347 MPTEYKNPRLLLIRGVLGLSSSG------LS---SFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 416 (1676)
Q Consensus 347 M~~~i~nPRILLL~~~LEy~r~e------l~---Sle~-i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L~~~g 416 (1676)
|++.++||||+|++++|||.+.+ +. +++. +++|++|++.++++|++.|++||+++++|++.|++||.++|
T Consensus 230 m~~~~~n~kI~ll~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~ 309 (526)
T cd03339 230 MPKEVKDAKIAILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNG 309 (526)
T ss_pred CCceecCCCEEEEEecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCC
Confidence 99999999999999999998765 33 3567 89999999999999999999999999999999999999999
Q ss_pred CeEeecCCHHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEEE
Q 000317 417 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLL 495 (1676)
Q Consensus 417 Itvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~gcTILL 495 (1676)
|+++++++..+|+|||++|||+++++++ ++..+||+|+.|+++.|+. ..++|+||+||+.+.+|||+|
T Consensus 310 I~av~~v~~~~LerIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~-----------~~~~~~~i~g~~~~~~~TIll 378 (526)
T cd03339 310 LPAVRWVGGVEIELIAIATGGRIVPRFEDLSPEKLGKAGLVREISFGT-----------TKDKMLVIEGCPNSKAVTIFI 378 (526)
T ss_pred CEEEEeCCHHHHHHHHHHhCCEEecchhhCChhhcccCceEEEEEecC-----------CCcEEEEEECCCCCCEEEEEE
Confidence 9999999999999999999999999999 9999999999999999853 247999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000317 496 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 536 (1676)
Q Consensus 496 RG~s~~~L~evKrvl~dav~vv~~l~lE~s~l~ggGa~~~~ 536 (1676)
||+|..+|+|+||+++||++++++++.+.++|+||||++..
T Consensus 379 rG~t~~~l~E~er~l~DAl~~~~~~~~~~~vvpGGGa~e~~ 419 (526)
T cd03339 379 RGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEIS 419 (526)
T ss_pred ECCCHHHHHHHHHHHHHHHHHHHHHhhCCCEEeCCCHHHHH
Confidence 99999999999999999999999999999999999999885
No 14
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.9e-36 Score=379.94 Aligned_cols=255 Identities=19% Similarity=0.251 Sum_probs=234.0
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHHhhcCCCCCCC-CccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCC
Q 000317 268 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDG-KSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 346 (1676)
Q Consensus 268 ~qLL~~~~~sl~sK~~~~W~~~ls~L~~eAv~~V~pd~~~g-~~mDi~~yVKIKKI~GGs~~DS~vI~GVV~~Knvahk~ 346 (1676)
..|++.+.+++++|....|.+.|++|+++|+..++.....| ..+|+ ++|+|++++||++.+|++++|+||+++++|++
T Consensus 138 ~~l~~ia~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~~~~~~~~-~~I~i~~~~Ggs~~~s~li~Givi~~~~~~~~ 216 (527)
T cd03335 138 ESLINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKTKYPI-KAVNILKAHGKSAKESYLVNGYALNCTRASQG 216 (527)
T ss_pred HHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCccCH-HHeEEEEecCcChhhcceeeeEEEecccCCCC
Confidence 34788899999999999999999999999999996321222 25788 58999999999999999999999999999999
Q ss_pred CCccccCCcEEEEeeecccccccc---------ccHHH-HHHHHHHHHHHHhhHhcCCCeEEEecccccHHHHHHHHHcC
Q 000317 347 MPTEYKNPRLLLIRGVLGLSSSGL---------SSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 416 (1676)
Q Consensus 347 M~~~i~nPRILLL~~~LEy~r~el---------~Sle~-i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L~~~g 416 (1676)
||++++||||+|++++|++.+.++ ..++. .++|+++++.++++|++.|++|||++++|++.|++||.++|
T Consensus 217 m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~ 296 (527)
T cd03335 217 MPTRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAG 296 (527)
T ss_pred CcccccCCcEEEEeccCCCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCC
Confidence 999999999999999999988762 35667 79999999999999999999999999999999999999999
Q ss_pred CeEeecCCHHHHHHHHHHhCCceecccc-CC------CCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCc
Q 000317 417 MTLVFDMKLHRLERVARCTGSPILSSGS-LT------SQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRL 489 (1676)
Q Consensus 417 Itvv~nVK~~~LeRIAR~TGA~IvsSid-L~------~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~ 489 (1676)
|++++++++.+|+|||++|||+|+++++ ++ +..||+|+.|+++++++ ++|++|+||..+.
T Consensus 297 I~~v~~v~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~-------------~~~~~i~g~~~~~ 363 (527)
T cd03335 297 AMAVRRVKKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGD-------------DELILIKGTKKRS 363 (527)
T ss_pred cEEEEeCCHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEEEEEECC-------------eEEEEEEcCCCCC
Confidence 9999999999999999999999999986 53 34799999999999753 6899999999999
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000317 490 GCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 536 (1676)
Q Consensus 490 gcTILLRG~s~~~L~evKrvl~dav~vv~~l~lE~s~l~ggGa~~~~ 536 (1676)
+|||+|||+|..+|+|+||+++||++++++++.+.++|+||||++..
T Consensus 364 ~~TIllrG~t~~~l~e~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ 410 (527)
T cd03335 364 SASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETA 410 (527)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHH
Confidence 99999999999999999999999999999999999999999999875
No 15
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=7.5e-36 Score=374.27 Aligned_cols=249 Identities=23% Similarity=0.346 Sum_probs=232.0
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCC-
Q 000317 268 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH- 346 (1676)
Q Consensus 268 ~qLL~~~~~sl~sK~~~~W~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GGs~~DS~vI~GVV~~Knvahk~- 346 (1676)
..|++.+.+++++|....+.+.|++|+++|+..+.+ ..|+ ++|+|++++||++.||++++|+||++++++..
T Consensus 149 ~~l~~ia~t~l~sK~~~~~~~~l~~l~~~A~~~v~~------~~~~-~~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~ 221 (522)
T cd03340 149 ELLEKCAATALNSKLIASEKEFFAKMVVDAVLSLDD------DLDL-DMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGF 221 (522)
T ss_pred HHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHhcc------cCCh-hHheEeeecCCChhhceeeeeEEEecccCcccc
Confidence 347888999999999999999999999999999965 2466 69999999999999999999999999998654
Q ss_pred --CCccccCCcEEEEeeeccccccc------ccc---HHH-HHHHHHHHHHHHhhHhcCCCeEEEecccccHHHHHHHHH
Q 000317 347 --MPTEYKNPRLLLIRGVLGLSSSG------LSS---FKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILE 414 (1676)
Q Consensus 347 --M~~~i~nPRILLL~~~LEy~r~e------l~S---le~-i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L~~ 414 (1676)
||++++||||||++++|||.+.+ +.+ ++. +++|++++.+++++|++.|++||+++++|++.|++||.+
T Consensus 222 ~~~~~~~~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~ 301 (522)
T cd03340 222 EQQPKKFKNPKILLLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFAD 301 (522)
T ss_pred ccCCccccCCeEEEEeCCCCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHH
Confidence 69999999999999999998764 344 566 799999999999999999999999999999999999999
Q ss_pred cCCeEeecCCHHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEE
Q 000317 415 KGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTV 493 (1676)
Q Consensus 415 ~gItvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~gcTI 493 (1676)
+||+++.+|+..+|+|||++|||+++++++ +++..||+|+.|++++++ .++|++|+||+.+.+|||
T Consensus 302 ~~I~~~~~v~~~~l~rIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig-------------~~~~~~~~~~~~~~~~TI 368 (522)
T cd03340 302 RDIFCAGRVPEEDLKRVAQATGGSIQTTVSNITDDVLGTCGLFEERQVG-------------GERYNIFTGCPKAKTCTI 368 (522)
T ss_pred CCcEEEEeCCHHHHHHHHHHHCCEEeeccccCCccccccceEEEEEEEC-------------CEEEEEEECCCCCceEEE
Confidence 999999999999999999999999999999 999999999999998874 268999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000317 494 LLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 536 (1676)
Q Consensus 494 LLRG~s~~~L~evKrvl~dav~vv~~l~lE~s~l~ggGa~~~~ 536 (1676)
||||++..+|+|+||+++||++++++++.++.+|+||||++..
T Consensus 369 llrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGG~~E~~ 411 (522)
T cd03340 369 ILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEME 411 (522)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHH
Confidence 9999999999999999999999999999999999999999975
No 16
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=8.1e-36 Score=374.08 Aligned_cols=255 Identities=20% Similarity=0.296 Sum_probs=236.7
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCCC
Q 000317 268 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 347 (1676)
Q Consensus 268 ~qLL~~~~~sl~sK~~~~W~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GGs~~DS~vI~GVV~~Knvahk~M 347 (1676)
..|++.+.+++++|....|.+.|++|+++|+..+... ....+|+ ++|+|+|++||++.||++++|++|++++.|..|
T Consensus 158 ~~l~~ia~t~l~sK~~~~~~~~ls~i~~~av~~i~~~--~~~~~d~-~~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~~m 234 (532)
T TIGR02343 158 EPLIQAAKTSLGSKIVSKCHRRFAEIAVDAVLMVADM--ERRDVDF-DLIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQM 234 (532)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhhhc--CCCcCCH-HHeeEEEecCCCcccceeEeeEEEecCcCCCCC
Confidence 4688899999999999999999999999999999642 1236888 599999999999999999999999999999999
Q ss_pred CccccCCcEEEEeeeccccccc------ccc---HHH-HHHHHHHHHHHHhhHhcCCCeEEEecccccHHHHHHHHHcCC
Q 000317 348 PTEYKNPRLLLIRGVLGLSSSG------LSS---FKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGM 417 (1676)
Q Consensus 348 ~~~i~nPRILLL~~~LEy~r~e------l~S---le~-i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L~~~gI 417 (1676)
|+.++||||+|++++||+.+.+ +.+ ++. +++|+++++.++++|++.|++||+++++|++.|++||.++||
T Consensus 235 ~~~~~n~kI~l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~i 314 (532)
T TIGR02343 235 PKEVKDAKIAILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQNDL 314 (532)
T ss_pred CeeecCCcEEEEEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCCc
Confidence 9999999999999999999875 344 456 899999999999999999999999999999999999999999
Q ss_pred eEeecCCHHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEEEe
Q 000317 418 TLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLLK 496 (1676)
Q Consensus 418 tvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~gcTILLR 496 (1676)
.++++++..+|+|||++|||.++++++ +++..||+|+.|+++.++.. .+++++|+||+.+..|||+||
T Consensus 315 ~~v~~~~~~~l~~Ia~~tGa~~i~~l~~~~~~~LG~a~~v~~~~ig~~-----------~~~~~~i~~~~~~~~~TIllr 383 (532)
T TIGR02343 315 PAVRWVGGHELELIAIATGGRIVPRFEELSEDKLGKAGLVREISFGTT-----------KDRMLVIEQCKNSKAVTIFIR 383 (532)
T ss_pred EEEEcCCHHHHHHHHHHhCCEEecccccCCHhHCcccceEEEEEecCC-----------cceEEEEECCCCCCEEEEEEE
Confidence 999999999999999999999999999 99999999999999998541 258999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000317 497 GSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 536 (1676)
Q Consensus 497 G~s~~~L~evKrvl~dav~vv~~l~lE~s~l~ggGa~~~~ 536 (1676)
|+|..+|+|+||+++||++++++++.++.+|+||||++..
T Consensus 384 G~t~~~l~E~er~l~DAl~~v~~~i~~~~vvpGGGa~e~~ 423 (532)
T TIGR02343 384 GGNKMIIEEAKRSIHDALCVVRNLIKNSRIVYGGGAAEIS 423 (532)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHH
Confidence 9999999999999999999999999999999999999985
No 17
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=6e-36 Score=375.54 Aligned_cols=248 Identities=21% Similarity=0.271 Sum_probs=231.6
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCCC
Q 000317 268 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 347 (1676)
Q Consensus 268 ~qLL~~~~~sl~sK~~~~W~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GGs~~DS~vI~GVV~~Knvahk~M 347 (1676)
..|++.+.+++++|....|.+.|++|+++|+..+.. .+|+ ++|+|+|++||++.||++++|+|+++++.| .|
T Consensus 159 ~~l~~va~t~l~sk~~~~~~~~l~~i~~~av~~i~~------~~~~-~~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~-~~ 230 (533)
T PTZ00212 159 EDLLNIARTTLSSKLLTVEKDHFAKLAVDAVLRLKG------SGNL-DYIQIIKKPGGTLRDSYLEDGFILEKKIGV-GQ 230 (533)
T ss_pred HHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHhc------cCCc-cceEEEEecCcCccccEEEEeEEEecccCC-CC
Confidence 568899999999999999999999999999999964 2566 589999999999999999999999999988 58
Q ss_pred CccccCCcEEEEeeecccccccc-------cc---HHH-HHHHHHHHHHHHhhHhcCCCeEEEecccccHHHHHHHHHcC
Q 000317 348 PTEYKNPRLLLIRGVLGLSSSGL-------SS---FKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 416 (1676)
Q Consensus 348 ~~~i~nPRILLL~~~LEy~r~el-------~S---le~-i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L~~~g 416 (1676)
+++++||||||++++|||++.+. .+ +.. .++|++++++++.+|++.++++|+++++|++.|+++|.++|
T Consensus 231 ~~~i~n~kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~ 310 (533)
T PTZ00212 231 PKRLENCKILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAG 310 (533)
T ss_pred CccccCCcEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCC
Confidence 99999999999999999998762 44 555 78999999999999999999999999999999999999999
Q ss_pred CeEeecCCHHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEEE
Q 000317 417 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLL 495 (1676)
Q Consensus 417 Itvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~gcTILL 495 (1676)
|++++++++.+|+|||++|||+++++++ +++.+||+|+.|+++.++. ++|++|+||....+|||+|
T Consensus 311 I~avr~v~~~~l~rIa~~tGa~iis~l~~~~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TI~l 377 (533)
T PTZ00212 311 IMAIEHADFDGMERLAAALGAEIVSTFDTPEKVKLGHCDLIEEIMIGE-------------DKLIRFSGCAKGEACTIVL 377 (533)
T ss_pred CEEEecCCHHHHHHHHHHhCCEEeecCCCCCHHHccCCceEEEEEECC-------------eEEEEEEccCCCCEEEEEE
Confidence 9999999999999999999999999999 9989999999999888642 6899999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000317 496 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 536 (1676)
Q Consensus 496 RG~s~~~L~evKrvl~dav~vv~~l~lE~s~l~ggGa~~~~ 536 (1676)
||+|..+|+|+||.++||++++++++.+.++|+||||++..
T Consensus 378 rG~t~~~l~E~er~i~DAl~vv~~~i~~~~vVpGGGa~e~~ 418 (533)
T PTZ00212 378 RGASTHILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEML 418 (533)
T ss_pred ECCChhHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHH
Confidence 99999999999999999999999999999999999999875
No 18
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.6e-35 Score=368.77 Aligned_cols=249 Identities=18% Similarity=0.213 Sum_probs=231.7
Q ss_pred HHHHHHhhcccCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCC
Q 000317 267 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 346 (1676)
Q Consensus 267 l~qLL~~~~~sl~sK~~~~W~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GGs~~DS~vI~GVV~~Knvahk~ 346 (1676)
...|++.+.+++++|....|.+.|++|+++|+..+.. .+|+ +.|+|++++||++.||++++|+|+++.+.| .
T Consensus 146 ~~~l~~ia~t~lssk~~~~~~~~l~~l~~~A~~~v~~------~~~~-~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~-~ 217 (517)
T cd03336 146 REDLLNIARTTLSSKILTQDKEHFAELAVDAVLRLKG------SGNL-DAIQIIKKLGGSLKDSYLDEGFLLDKKIGV-N 217 (517)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhc------cCCc-cceeEEEccCCCccceEEEeeEEEecccCC-C
Confidence 3568899999999999999999999999999999853 3566 589999999999999999999999999877 5
Q ss_pred CCccccCCcEEEEeeecccccccc----------ccHHH-HHHHHHHHHHHHhhHhcCCCeEEEecccccHHHHHHHHHc
Q 000317 347 MPTEYKNPRLLLIRGVLGLSSSGL----------SSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEK 415 (1676)
Q Consensus 347 M~~~i~nPRILLL~~~LEy~r~el----------~Sle~-i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L~~~ 415 (1676)
|+++++||||+|++++|||++.+. .++.. .++|++++++++.+|++.++++|+++++|++.|++||.++
T Consensus 218 ~~~~~~n~kIli~~~~le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~ 297 (517)
T cd03336 218 QPKRIENAKILIANTPMDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADA 297 (517)
T ss_pred CCCeeccccEEEEecCCCcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHC
Confidence 899999999999999999988752 23556 7899999999999999999999999999999999999999
Q ss_pred CCeEeecCCHHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEE
Q 000317 416 GMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVL 494 (1676)
Q Consensus 416 gItvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~gcTIL 494 (1676)
||+++++++..+|+|||++|||+++++++ +++.+||+|+.|++..++. ++|++|+||+.+.+|||+
T Consensus 298 ~I~av~~v~~~~L~rIa~~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TI~ 364 (517)
T cd03336 298 GIMAIEHADFDGVERLALVTGGEIASTFDHPELVKLGTCKLIEEIMIGE-------------DKLIRFSGVAAGEACTIV 364 (517)
T ss_pred CcEEEecCCHHHHHHHHHHhCCEEecccCCCCcccccccceEEEEEECC-------------eEEEEEEccCCCceEEEE
Confidence 99999999999999999999999999999 9999999999999887642 689999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000317 495 LKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 536 (1676)
Q Consensus 495 LRG~s~~~L~evKrvl~dav~vv~~l~lE~s~l~ggGa~~~~ 536 (1676)
|||+|..+|+|+||+++||++++++++.+.++|+||||++..
T Consensus 365 lrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGGa~e~~ 406 (517)
T cd03336 365 LRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEML 406 (517)
T ss_pred EeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHH
Confidence 999999999999999999999999999999999999999975
No 19
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=100.00 E-value=1.4e-35 Score=330.61 Aligned_cols=206 Identities=32% Similarity=0.427 Sum_probs=194.5
Q ss_pred HHHHhhcccCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCCCC
Q 000317 269 QLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHMP 348 (1676)
Q Consensus 269 qLL~~~~~sl~sK~~~~W~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GGs~~DS~vI~GVV~~Knvahk~M~ 348 (1676)
.|++.+.+++++|. ..|.+.|++|+++|+..+.++.. ++..+||+|++++||++.||++++|++|+|+++|+.||
T Consensus 3 ~l~~ia~ts~~sk~-~~~~~~l~~l~~~Av~~v~~~~~----~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m~ 77 (209)
T cd03333 3 LLLQVATTSLNSKL-SSWDDFLGKLVVDAVLKVGPDNR----MDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYMP 77 (209)
T ss_pred HHHHHHHHHhccch-hhHHHHHHHHHHHHHHHhhccCC----CCchHHEEEEEecCcChhhceeEeeEEEeccccCCCCC
Confidence 46777888999999 99999999999999999987532 55557999999999999999999999999999999999
Q ss_pred ccccCCcEEEEeeeccccccccccHHHHHHHHHHHHHHHhhHhcCCCeEEEecccccHHHHHHHHHcCCeEeecCCHHHH
Q 000317 349 TEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRL 428 (1676)
Q Consensus 349 ~~i~nPRILLL~~~LEy~r~el~Sle~i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L~~~gItvv~nVK~~~L 428 (1676)
++++||||||++++||| |||++++|++.|+++|.++||++++++++.+|
T Consensus 78 ~~~~n~~Ill~~~~le~-------------------------------vii~~~~I~~~al~~l~~~~I~~v~~~~~~~l 126 (209)
T cd03333 78 KRLENAKILLLDCPLEY-------------------------------VVIAEKGIDDLALHYLAKAGIMAVRRVKKEDL 126 (209)
T ss_pred eEcCCCcEEEEeCCeeE-------------------------------EEEecCcccHHHHHHHHHCCCEEEEeCCHHHH
Confidence 99999999999999998 99999999999999999999999999999999
Q ss_pred HHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEEEeCCCHHHHHHHH
Q 000317 429 ERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLLKGSNSDELKRIK 507 (1676)
Q Consensus 429 eRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~gcTILLRG~s~~~L~evK 507 (1676)
+|||++|||+++++++ ++.++||+|+.|+++++++ ++|++|+||....+|||+|||++..+|+|+|
T Consensus 127 ~~ia~~tga~ii~~~~~~~~~~lG~~~~v~~~~~~~-------------~~~~~~~~~~~~~~~tIllrG~t~~~l~e~k 193 (209)
T cd03333 127 ERIARATGATIVSSLEDLTPEDLGTAELVEETKIGE-------------EKLTFIEGCKGGKAATILLRGATEVELDEVK 193 (209)
T ss_pred HHHHHHHCCEEecccccCChhhceeeeEEEEEEECC-------------eEEEEEEcCCCCCEEEEEEECCCHhHHHHHH
Confidence 9999999999999999 9999999999999999753 7999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q 000317 508 SVVQCAVVMAYHLILE 523 (1676)
Q Consensus 508 rvl~dav~vv~~l~lE 523 (1676)
|+++||++++++++++
T Consensus 194 r~l~dal~~~~~~~~~ 209 (209)
T cd03333 194 RSLHDALCAVRAAVEE 209 (209)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9999999999999864
No 20
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.4e-35 Score=371.31 Aligned_cols=254 Identities=19% Similarity=0.260 Sum_probs=235.4
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCC-
Q 000317 268 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH- 346 (1676)
Q Consensus 268 ~qLL~~~~~sl~sK~~~~W~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GGs~~DS~vI~GVV~~Knvahk~- 346 (1676)
..|++.+.+++++|....|.+.|+.|+++|+..|.++. .++.+|+ +.|+|.+++||++.||++++|++|+++++|+.
T Consensus 137 ~~l~~va~ts~~sK~~~~~~~~ls~li~~A~~~v~~~~-~~~~~d~-~~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~~ 214 (515)
T cd03338 137 ESLIKSATTSLNSKVVSQYSSLLAPIAVDAVLKVIDPA-TATNVDL-KDIRIVKKLGGTIEDTELVDGLVFTQKASKKAG 214 (515)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHHHhhccc-ccCcCCH-HHeEEEEecCCChhhceeeeeEEEeccccCcCC
Confidence 35788889999999999999999999999999998643 2247898 58999999999999999999999999999986
Q ss_pred CCccccCCcEEEEeeeccccccc------cc---cHHH-HHHHHHHHHHHHhhHhcCCCeEEEecccc-----cHHHHHH
Q 000317 347 MPTEYKNPRLLLIRGVLGLSSSG------LS---SFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTV-----SRDIQES 411 (1676)
Q Consensus 347 M~~~i~nPRILLL~~~LEy~r~e------l~---Sle~-i~QE~eyL~~lV~rI~~~~pnVVLveksV-----s~~Al~~ 411 (1676)
||+.+.||||++|+|+|||.+.+ +. +++. +++|+++++.++++|++.|++||||+++| +++|++|
T Consensus 215 ~p~~i~n~ki~ll~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~ 294 (515)
T cd03338 215 GPTRIEKAKIGLIQFCLSPPKTDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHF 294 (515)
T ss_pred CCccccCCcEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHH
Confidence 59999999999999999998765 22 4667 89999999999999999999999999987 9999999
Q ss_pred HHHcCCeEeecCCHHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCC-Cc
Q 000317 412 ILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPT-RL 489 (1676)
Q Consensus 412 L~~~gItvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~-~~ 489 (1676)
|.++||++++++++.+|+|||++|||+++++++ ++...||+|+.|+++++++ ++|++|+||+. +.
T Consensus 295 l~~~~I~av~~~~~~~LerIa~~tGa~ii~sl~~l~~~~LG~~~~v~~~~~g~-------------~~~~~i~~~~~~~~ 361 (515)
T cd03338 295 LAKLKIMVVKDIEREEIEFICKTIGCKPVASIDHFTEDKLGSADLVEEVSLGD-------------GKIVKITGVKNPGK 361 (515)
T ss_pred HHHCCceEEecCCHHHHHHHHHHHCCEEecccccCCHhhCCCCceEEEEEECC-------------eEEEEEEecCCCCc
Confidence 999999999999999999999999999999999 9989999999999999742 68999999997 68
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000317 490 GCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 536 (1676)
Q Consensus 490 gcTILLRG~s~~~L~evKrvl~dav~vv~~l~lE~s~l~ggGa~~~~ 536 (1676)
+|||+|||+|..+|+|+||+++||++++++++.++++|+||||++..
T Consensus 362 ~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~~vvpGGG~~e~~ 408 (515)
T cd03338 362 TVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIE 408 (515)
T ss_pred eEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCHHHHH
Confidence 99999999999999999999999999999999999999999999875
No 21
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.5e-35 Score=368.89 Aligned_cols=254 Identities=20% Similarity=0.260 Sum_probs=235.0
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCC-CC
Q 000317 268 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAH-KH 346 (1676)
Q Consensus 268 ~qLL~~~~~sl~sK~~~~W~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GGs~~DS~vI~GVV~~Knvah-k~ 346 (1676)
.+|++.+.+++++|....|.+.|+.|+++|+..+.++. .++.+|+ +.|+|+|++||++.||++++|++|++++.| ++
T Consensus 138 ~~l~~va~tsl~sK~~~~~~~~ls~l~~~a~~~v~~~~-~~~~~~~-~~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~~ 215 (517)
T TIGR02342 138 EILIKSATTSLSSKVVSQYSSLLAPLAVDAVLKVIDPE-NDKNVDL-NDIKVVKKLGGTIDDTELIEGLVFTQKASRSAG 215 (517)
T ss_pred HHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHhccc-cCCccCH-HHeeEEeccCCChhhcEEEeeEEEeccccccCC
Confidence 45888999999999999999999999999999997632 2346888 589999999999999999999999999999 59
Q ss_pred CCccccCCcEEEEeeeccccccc------cc---cHHH-HHHHHHHHHHHHhhHhcCCCeEEEecccc-----cHHHHHH
Q 000317 347 MPTEYKNPRLLLIRGVLGLSSSG------LS---SFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTV-----SRDIQES 411 (1676)
Q Consensus 347 M~~~i~nPRILLL~~~LEy~r~e------l~---Sle~-i~QE~eyL~~lV~rI~~~~pnVVLveksV-----s~~Al~~ 411 (1676)
||+++.||||++++|+|++.+.+ +. +++. +++|+++++.++++|++.|++||+++++| +++|++|
T Consensus 216 mpk~i~n~kI~ll~~~Le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~ 295 (517)
T TIGR02342 216 GPTRIEKAKIGLIQFQISPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHF 295 (517)
T ss_pred CCccccCCcEEEEecCCCCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHH
Confidence 99999999999999999998865 23 4677 89999999999999999999999999998 9999999
Q ss_pred HHHcCCeEeecCCHHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCC-c
Q 000317 412 ILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTR-L 489 (1676)
Q Consensus 412 L~~~gItvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~-~ 489 (1676)
|.++||.+++++++.+|+|||++|||+++++++ ++..+||+|+.|++++++. ++|++|++|+.. .
T Consensus 296 l~~~~I~av~~v~~~~LerIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~~~~-------------~~~~~i~~~~~~~~ 362 (517)
T TIGR02342 296 LAKMKIMVVKDIEREEVEFICKTIGCKPIASIDHFTADKLGSAELVEEVTTDG-------------GKIIKITGIQNAGK 362 (517)
T ss_pred HhhCCceEEecCCHHHHHHHHHHHCCEEEcchhhcCcccCcCCceEEEEEECC-------------eEEEEEEccCCCCc
Confidence 999999999999999999999999999999999 9999999999999887642 689999999875 8
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000317 490 GCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 536 (1676)
Q Consensus 490 gcTILLRG~s~~~L~evKrvl~dav~vv~~l~lE~s~l~ggGa~~~~ 536 (1676)
.|||+|||+|+.+++|+||+++||++++++++.++.+|+||||++..
T Consensus 363 ~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~~~VpGGGa~e~~ 409 (517)
T TIGR02342 363 TVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKRGLIPGGGAPEIE 409 (517)
T ss_pred eEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECcCHHHHH
Confidence 99999999999999999999999999999999999999999999875
No 22
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.7e-35 Score=365.61 Aligned_cols=225 Identities=26% Similarity=0.439 Sum_probs=210.5
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHHhhcCCCCCCC-CccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCC
Q 000317 268 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDG-KSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 346 (1676)
Q Consensus 268 ~qLL~~~~~sl~sK~~~~W~~~ls~L~~eAv~~V~pd~~~g-~~mDi~~yVKIKKI~GGs~~DS~vI~GVV~~Knvahk~ 346 (1676)
..|++.+.+++++|..+.|.+.|++|+++|+..+.++.... ..+|+++||+|++++||++.||++++|+||+|+++|++
T Consensus 145 ~~l~~i~~t~l~sK~~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~~ 224 (480)
T cd03337 145 AQMLKIIKSCIGTKFVSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHPK 224 (480)
T ss_pred HHHHHHHHHHhccCcchhHHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCCCC
Confidence 45788889999999999999999999999999998865332 36899889999999999999999999999999999999
Q ss_pred CCccccCCcEEEEeeeccccccccccHHHHHHHHHHHHHHHhhHhcCCCeEEEecccccHHHHHHHHHcCCeEeecCCHH
Q 000317 347 MPTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLH 426 (1676)
Q Consensus 347 M~~~i~nPRILLL~~~LEy~r~el~Sle~i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L~~~gItvv~nVK~~ 426 (1676)
|+++++||||||++|+||| ||+++++|++.|++||.++||++++++++.
T Consensus 225 m~~~~~n~kIlll~~~Le~-------------------------------lvi~~k~I~d~al~~L~~~~I~~v~~v~~~ 273 (480)
T cd03337 225 MRRRIENPRIVLLDCPLEY-------------------------------LVITEKGVSDLAQHYLVKAGITALRRVRKT 273 (480)
T ss_pred CCcEecCCCEEEEecCcce-------------------------------EEEeCCCccHHHHHHHHHCCcEEEEeCCHH
Confidence 9999999999999999998 999999999999999999999999999999
Q ss_pred HHHHHHHHhCCceecccc-CCCCCccc-cceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEEEeCCCHHHHH
Q 000317 427 RLERVARCTGSPILSSGS-LTSQKLKH-CDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLLKGSNSDELK 504 (1676)
Q Consensus 427 ~LeRIAR~TGA~IvsSid-L~~~~LG~-C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~gcTILLRG~s~~~L~ 504 (1676)
+|+|||++|||+|+++++ +.+..||+ |+.|++++++ .++|+||+||..+.+|||+|||++..+|+
T Consensus 274 ~L~rIa~~tGa~ii~~~~~l~~~~LG~~~~~~~~~~~~-------------~~~~~~i~~~~~~~~~TIllrG~t~~~l~ 340 (480)
T cd03337 274 DNNRIARACGATIVNRPEELTESDVGTGAGLFEVKKIG-------------DEYFTFITECKDPKACTILLRGASKDVLN 340 (480)
T ss_pred HHHHHHHHHCCEEecchhhCCHHHcCCcccEEEEEEeC-------------CeEEEEEEcCCCCCEEEEEEECCCHHHHH
Confidence 999999999999999999 99999999 6677777653 26899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000317 505 RIKSVVQCAVVMAYHLILETSFLVDQRAMFST 536 (1676)
Q Consensus 505 evKrvl~dav~vv~~l~lE~s~l~ggGa~~~~ 536 (1676)
|+||+++||++++++++.++.+|+||||++..
T Consensus 341 e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ 372 (480)
T cd03337 341 EVERNLQDAMAVARNIILNPKLVPGGGATEMA 372 (480)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHH
Confidence 99999999999999999999999999999875
No 23
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=8.1e-35 Score=364.53 Aligned_cols=252 Identities=23% Similarity=0.306 Sum_probs=233.7
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCCC
Q 000317 268 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 347 (1676)
Q Consensus 268 ~qLL~~~~~sl~sK~~~~W~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GGs~~DS~vI~GVV~~Knvahk~M 347 (1676)
..|++.+.+++++|....|.+.|++|+++|+..+.++ +..+|+ +.|+|+|++||+..||++++|++|.+.+.|+.|
T Consensus 146 ~~l~~ia~tsl~sK~~~~~~~~ls~iv~~Av~~v~~~---~~~i~~-~~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~~~ 221 (531)
T TIGR02347 146 ELLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKKD---GEQIDL-FMVEIMEMKHKSATDTTLIRGLVLDHGARHPDM 221 (531)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhhc---CCCCCh-hHeEEEEecCCCccccEEEeeEEEecCcCCCCC
Confidence 4578889999999999999999999999999999863 224777 479999999999999999999999999999999
Q ss_pred CccccCCcEEEEeeeccccccc------cc---cHHH-HHHHHHHHHHHHhhHhcCC-------Ce---EEEecccccHH
Q 000317 348 PTEYKNPRLLLIRGVLGLSSSG------LS---SFKA-MEQEKDQLKSVMDMIDMCH-------PN---VVLVEKTVSRD 407 (1676)
Q Consensus 348 ~~~i~nPRILLL~~~LEy~r~e------l~---Sle~-i~QE~eyL~~lV~rI~~~~-------pn---VVLveksVs~~ 407 (1676)
|+++.||||+|++++||+.+++ +. .+.. +.+|++|+++++++|+.++ |+ ||+++++|++.
T Consensus 222 ~~~~~n~~Ill~~~~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~ 301 (531)
T TIGR02347 222 PRRVKNAYILTCNVSLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPP 301 (531)
T ss_pred ceeccCceEEEEeCCCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHH
Confidence 9999999999999999999866 22 3556 8999999999999999976 36 99999999999
Q ss_pred HHHHHHHcCCeEeecCCHHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCC
Q 000317 408 IQESILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCP 486 (1676)
Q Consensus 408 Al~~L~~~gItvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~ 486 (1676)
|++||.++||++++++++.+|+|||++|||+++++++ +++..||+|+.|+++.++. ++|++|+||.
T Consensus 302 a~~~L~~~~I~~i~rv~~~~le~ia~~tGa~~i~~l~~~~~~~LG~~~~v~~~~ig~-------------~~~~~i~~~~ 368 (531)
T TIGR02347 302 SLDLLAKEGIMALRRAKRRNMERLTLACGGEALNSVEDLTPECLGWAGLVYETSIGE-------------EKYTFIEEVK 368 (531)
T ss_pred HHHHHHHCCceEEccCCHHHHHHHHHHhCCEEecccccCCccccccceEEEEEEECC-------------eEEEEEEcCC
Confidence 9999999999999999999999999999999999999 9999999999999998753 6899999999
Q ss_pred CCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000317 487 TRLGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 536 (1676)
Q Consensus 487 ~~~gcTILLRG~s~~~L~evKrvl~dav~vv~~l~lE~s~l~ggGa~~~~ 536 (1676)
.+..|||+|||+|..+|+|+||+++||++++++++.++++|+||||++..
T Consensus 369 ~~~~~TI~lrG~t~~~l~E~er~l~DAl~v~~~~~~~~~vvpGGGa~E~~ 418 (531)
T TIGR02347 369 NPKSCTILIKGPNDHTIKQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIA 418 (531)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999875
No 24
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=9.6e-35 Score=365.08 Aligned_cols=255 Identities=19% Similarity=0.248 Sum_probs=233.4
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHHhhcCCCCCCC-CccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCC
Q 000317 268 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDG-KSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 346 (1676)
Q Consensus 268 ~qLL~~~~~sl~sK~~~~W~~~ls~L~~eAv~~V~pd~~~g-~~mDi~~yVKIKKI~GGs~~DS~vI~GVV~~Knvahk~ 346 (1676)
..|++.+.+++++|....|.+.|++|+++|+..++.+...| ..+|+ ++|+|+|++||++.||++++|++|++.+.|.+
T Consensus 142 ~~l~~va~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~-~~I~i~k~~G~s~~~s~~i~Gi~i~~~~~~~~ 220 (536)
T TIGR02340 142 EALINVAKTSMSSKIIGLDSDFFSNIVVDAVLAVKMTNENGETKYPI-KAVNILKAHGGSARESYLVKGYALNCTRASQQ 220 (536)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhcccccCccccch-HHeEEEEecCCCccccEEEEEEEEecccCCCC
Confidence 34788889999999999999999999999999996321122 25788 58999999999999999999999999999999
Q ss_pred CCccccCCcEEEEeeecccccccc---------ccHHH-HHHHHHHHHHHHhhHhcCCCeEEEecccccHHHHHHHHHcC
Q 000317 347 MPTEYKNPRLLLIRGVLGLSSSGL---------SSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 416 (1676)
Q Consensus 347 M~~~i~nPRILLL~~~LEy~r~el---------~Sle~-i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L~~~g 416 (1676)
|+++++||||+|++++|++.+.++ ..++. .++|++++++++++|++.+++||+++++|++.|++||.++|
T Consensus 221 m~~~~~n~kIli~~~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~ 300 (536)
T TIGR02340 221 MPKRIKKAKIACLDFNLQKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAG 300 (536)
T ss_pred CcceecCCcEEEEecCCCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCC
Confidence 999999999999999999998662 34667 88999999999999999999999999999999999999999
Q ss_pred CeEeecCCHHHHHHHHHHhCCceecccc-C------CCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCc
Q 000317 417 MTLVFDMKLHRLERVARCTGSPILSSGS-L------TSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRL 489 (1676)
Q Consensus 417 Itvv~nVK~~~LeRIAR~TGA~IvsSid-L------~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~ 489 (1676)
|++++++++.+|+|||++|||+++++++ + +...||+|+.|++++++. ++|++|+||..+.
T Consensus 301 I~~i~rv~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~-------------~~~~~i~~~~~~~ 367 (536)
T TIGR02340 301 AMGVRRCKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVEERIAD-------------DECILIKGTKGRK 367 (536)
T ss_pred cEEEecCCHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEEEEEECC-------------eEEEEEEcCCCCC
Confidence 9999999999999999999999999986 5 345599999999999853 6899999999999
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000317 490 GCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 536 (1676)
Q Consensus 490 gcTILLRG~s~~~L~evKrvl~dav~vv~~l~lE~s~l~ggGa~~~~ 536 (1676)
+|||+|||+|..+++|+||.++||++++++++.+.++|+||||++..
T Consensus 368 ~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~~ 414 (536)
T TIGR02340 368 SASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETA 414 (536)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhcCCCEEECCCHHHHH
Confidence 99999999999999999999999999999999999999999999985
No 25
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=8.2e-35 Score=364.62 Aligned_cols=250 Identities=21% Similarity=0.323 Sum_probs=232.0
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCC--
Q 000317 268 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHK-- 345 (1676)
Q Consensus 268 ~qLL~~~~~sl~sK~~~~W~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GGs~~DS~vI~GVV~~Knvahk-- 345 (1676)
..|++.+.+++++|....+.+.|++|+++|+..+.++ .+|+ ++|+|++++||++.||++++|++|++.+++.
T Consensus 149 ~~l~~va~tsl~sK~~~~~~~~l~~l~~~A~~~v~~~-----~~~~-~~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~ 222 (522)
T TIGR02345 149 EVLEKCAATALNSKLIAHEKEFFSKMIVDAVLQLDID-----DLDL-KLIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGF 222 (522)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhc-----cCCh-hHheEEeecCCCHHhcceecceEEecccCcccc
Confidence 4578899999999999999999999999999999753 4777 5999999999999999999999999998865
Q ss_pred -CCCccccCCcEEEEeeeccccccc------cc---cHHH-HHHHHHHHHHHHhhHhcCCCeEEEecccccHHHHHHHHH
Q 000317 346 -HMPTEYKNPRLLLIRGVLGLSSSG------LS---SFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILE 414 (1676)
Q Consensus 346 -~M~~~i~nPRILLL~~~LEy~r~e------l~---Sle~-i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L~~ 414 (1676)
.||++++||||+|++++||+.+.+ +. .++. ++.|++++++++++|++.|++||+|+++|++.+++||.+
T Consensus 223 ~~~~~~~~n~kIll~~~~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~ 302 (522)
T TIGR02345 223 EQQPKKFANPKILLLNVELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFAD 302 (522)
T ss_pred ccCCceeccceEEEEecCcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHH
Confidence 469999999999999999998765 22 3556 689999999999999999999999999999999999999
Q ss_pred cCCeEeecCCHHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEE
Q 000317 415 KGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTV 493 (1676)
Q Consensus 415 ~gItvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~gcTI 493 (1676)
+||+++.+|+..+|+|||++|||+|+++++ +++..||+|+.|++++++ .++|++|+||+.+.+|||
T Consensus 303 ~~I~~~~~v~~~dl~ria~~tga~ii~~~~~l~~~~LG~~~~ie~~~~~-------------~~r~~~~~g~~~~~~~TI 369 (522)
T TIGR02345 303 HNIFCAGRVSDEDLKRVVKACGGSIQSTTSDLEADVLGTCALFEERQIG-------------SERYNYFTGCPHAKTCTI 369 (522)
T ss_pred CCcEEEecCCHHHHHHHHHHhCCeEEcchhhCChhhccCCceEEEEEEC-------------CeEEEEEEcCCCCceEEE
Confidence 999999999999999999999999999999 998999999999988864 378999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000317 494 LLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 536 (1676)
Q Consensus 494 LLRG~s~~~L~evKrvl~dav~vv~~l~lE~s~l~ggGa~~~~ 536 (1676)
+|||+|..+|+|+||+++||++++++++.++.+|+||||++..
T Consensus 370 ~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGG~~e~~ 412 (522)
T TIGR02345 370 ILRGGAEQFIEEAERSLHDAIMIVRRALKARKIVAGGGAIEME 412 (522)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHH
Confidence 9999999999999999999999999999999999999999875
No 26
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-34 Score=326.70 Aligned_cols=248 Identities=21% Similarity=0.340 Sum_probs=231.3
Q ss_pred HHHhhcccCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCC---C
Q 000317 270 LLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHK---H 346 (1676)
Q Consensus 270 LL~~~~~sl~sK~~~~W~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GGs~~DS~vI~GVV~~Knvahk---~ 346 (1676)
|.+++.|+++||.+....++|++++++|+..+.. ..|. +.|.||||+||.+.||.+|+||.|+|.+.+. .
T Consensus 155 L~KcA~T~lsSKlI~~ek~fF~~MvVDAV~~ld~------~l~~-~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEq 227 (543)
T KOG0361|consen 155 LEKCAATALSSKLIRQEKEFFAKMVVDAVLTLDN------DLDL-NMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQ 227 (543)
T ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhcc------ccch-hhcceeecCCCccchhhhccceeeeehccccchhh
Confidence 4588999999999999999999999999998863 2445 6999999999999999999999999999876 4
Q ss_pred CCccccCCcEEEEeeeccccccc---------cccHHH-HHHHHHHHHHHHhhHhcCCCeEEEecccccHHHHHHHHHcC
Q 000317 347 MPTEYKNPRLLLIRGVLGLSSSG---------LSSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 416 (1676)
Q Consensus 347 M~~~i~nPRILLL~~~LEy~r~e---------l~Sle~-i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L~~~g 416 (1676)
.|+++.|||||+|+..||....+ +..++. +..|+..|...+++|+..|.||||..-.|.++|.+||.+++
T Consensus 228 qPKk~~NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrd 307 (543)
T KOG0361|consen 228 QPKKFLNPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRD 307 (543)
T ss_pred CccccCCceEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccC
Confidence 69999999999999999986432 456888 99999999999999999999999999999999999999999
Q ss_pred CeEeecCCHHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEEE
Q 000317 417 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLL 495 (1676)
Q Consensus 417 Itvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~gcTILL 495 (1676)
|.+..+|...+|.|+..++|+.|.++.. +.+..||+|+.|+.++++. ..|-+|+||++...||++|
T Consensus 308 iFCAGRV~~eDl~Rv~~acGGsi~tt~~~i~~~~LG~C~~FeE~QvG~-------------eRyN~Fegcp~aktcTliL 374 (543)
T KOG0361|consen 308 IFCAGRVPEEDLNRVMQACGGSIQTTVSDIKEEVLGTCALFEERQVGG-------------ERYNLFEGCPKAKTCTLIL 374 (543)
T ss_pred ceecCcCCHHHHHHHHHhcCcchhhhhhhcchhhcchhhhHHHHhhcc-------------hhhhhhcCCCccceeEEEE
Confidence 9999999999999999999999999999 9999999999999998753 5899999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCcccccC
Q 000317 496 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 537 (1676)
Q Consensus 496 RG~s~~~L~evKrvl~dav~vv~~l~lE~s~l~ggGa~~~~~ 537 (1676)
||+-++.++|++|++|||++++++.+++.++++||||++++.
T Consensus 375 RGgaeqfieE~eRSlHDAImIVrralkn~~vVaGGGaiEMEl 416 (543)
T KOG0361|consen 375 RGGAEQFIEETERSLHDAIMIVRRALKNDSVVAGGGAIEMEL 416 (543)
T ss_pred eccHHHHHHHHhhhhhhHHHHHHHHhccCcEeeCCceeeehH
Confidence 999999999999999999999999999999999999999874
No 27
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.2e-33 Score=348.67 Aligned_cols=248 Identities=19% Similarity=0.226 Sum_probs=229.4
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCCC
Q 000317 268 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 347 (1676)
Q Consensus 268 ~qLL~~~~~sl~sK~~~~W~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GGs~~DS~vI~GVV~~Knvahk~M 347 (1676)
..|++.+.+++++|....|.+.|+.|+++|+..+... .|+ +.|+|.|++||++.||++++|+|+.+.+.| .|
T Consensus 148 ~~L~~ia~t~l~ski~~~~~~~~s~l~~~av~~i~~~------~~~-~~i~i~k~~G~s~~~s~l~~G~v~~~~~~~-~~ 219 (519)
T TIGR02341 148 DDLLNIARTTLSSKILSQHKDHFAQLAVDAVLRLKGS------GNL-DAIQIIKKLGGSLNDSYLDEGFLLEKKIGV-NQ 219 (519)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccC------CCh-hheEEEEccCCCcccceEEeeEEEeccCCC-CC
Confidence 5678899999999999999999999999999999531 255 469999999999999999999999999887 68
Q ss_pred CccccCCcEEEEeeeccccccc-------ccc---HHH-HHHHHHHHHHHHhhHhcCCCeEEEecccccHHHHHHHHHcC
Q 000317 348 PTEYKNPRLLLIRGVLGLSSSG-------LSS---FKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 416 (1676)
Q Consensus 348 ~~~i~nPRILLL~~~LEy~r~e-------l~S---le~-i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L~~~g 416 (1676)
|++++||||+|++++||+.+.+ +.+ +.. .+.|+++++++++.|++.++++|++++.|++.|++||.++|
T Consensus 220 ~~~~~n~~Ili~~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~ 299 (519)
T TIGR02341 220 PKRIENAKILIANTPMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAG 299 (519)
T ss_pred ceeeccccEEEEecCCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCC
Confidence 9999999999999999998755 233 556 78999999999999999999999999999999999999999
Q ss_pred CeEeecCCHHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEEE
Q 000317 417 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLL 495 (1676)
Q Consensus 417 Itvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~gcTILL 495 (1676)
|+++++++..+|+|||++|||.++++++ +++.+||+|+.|++..++ .+.|++|+||+.+..|||+|
T Consensus 300 I~~v~~~~~~~l~~ia~~tGa~ii~~~~~~~~~~lG~~~~v~~~~ig-------------~~~~~~~~~~~~~~~~TIll 366 (519)
T TIGR02341 300 VMAIEHADFEGIERLALVTGGEIVSTFDHPELVKLGSCDLIEEIMIG-------------EDKLLKFSGVKLGEACTIVL 366 (519)
T ss_pred cEEEecCCHHHHHHHHHHhCCEEecccccCCccccccCceEEEEEEC-------------CEEEEEEEcCCCCCEEEEEE
Confidence 9999999999999999999999999999 998899999999987764 26899999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000317 496 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 536 (1676)
Q Consensus 496 RG~s~~~L~evKrvl~dav~vv~~l~lE~s~l~ggGa~~~~ 536 (1676)
||+|+.+|+|+||+++||++++++++.++.+|+||||++..
T Consensus 367 rG~t~~~l~E~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ 407 (519)
T TIGR02341 367 RGATQQILDESERSLHDALCVLSQTVKESRTVLGGGCSEML 407 (519)
T ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHH
Confidence 99999999999999999999999999999999999999975
No 28
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.8e-32 Score=338.83 Aligned_cols=233 Identities=21% Similarity=0.300 Sum_probs=214.5
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCCC
Q 000317 268 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 347 (1676)
Q Consensus 268 ~qLL~~~~~sl~sK~~~~W~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GGs~~DS~vI~GVV~~Knvahk~M 347 (1676)
..|++.+.+++++|....|.+.|++|+++|+..+.++ ++.+|+ +.|+|+|++||++.||++++|++|++.++|+.|
T Consensus 142 ~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~---~~~~~~-~~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~~m 217 (484)
T cd03342 142 ELLLSVARTSLRTKLHADLADQLTEIVVDAVLAIYKP---DEPIDL-HMVEIMQMQHKSDSDTKLIRGLVLDHGARHPDM 217 (484)
T ss_pred HHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHhhc---CCccCh-hHeEEEEecCCChhhceEEeeEEEecCCCCCCC
Confidence 4588889999999999999999999999999999864 346888 589999999999999999999999999999999
Q ss_pred CccccCCcEEEEeeeccccccccccHHHHHHHHHHHHHHHhhHhcCCCeEEEecccccHHHHHHHHHcCCeEeecCCHHH
Q 000317 348 PTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHR 427 (1676)
Q Consensus 348 ~~~i~nPRILLL~~~LEy~r~el~Sle~i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L~~~gItvv~nVK~~~ 427 (1676)
++++.||||+|++++|++.+.++..- + ..+||+++++|++.|+++|.++||++++++++.+
T Consensus 218 ~~~~~n~~Ill~~~~le~~~~~~~~~--~-----------------~~~lvi~~~~I~~~al~~l~~~~I~av~~~~~~~ 278 (484)
T cd03342 218 PKRVENAYILTCNVSLEYEKTEVNSG--F-----------------FYSVVINQKGIDPPSLDMLAKEGILALRRAKRRN 278 (484)
T ss_pred CccccCceEEEEeCCCCCCccccCcE--E-----------------EEEEEEeCCCccHHHHHHHHHCCCeEEEeCCHHH
Confidence 99999999999999999987763210 0 0139999999999999999999999999999999
Q ss_pred HHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEEEeCCCHHHHHHH
Q 000317 428 LERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLLKGSNSDELKRI 506 (1676)
Q Consensus 428 LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~gcTILLRG~s~~~L~ev 506 (1676)
|+|||++|||+++++++ +++..||+|+.|+++.++. ++|+||+||..+..|||+|||+|..+|+|+
T Consensus 279 l~~ia~~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~-------------~~~~~i~~~~~~~~~tI~lrg~t~~~l~E~ 345 (484)
T cd03342 279 MERLTLACGGVAMNSVDDLSPECLGYAGLVYERTLGE-------------EKYTFIEGVKNPKSCTILIKGPNDHTITQI 345 (484)
T ss_pred HHHHHHHhCCEEecccccCChhhCcccceEEEEEECC-------------eEEEEEECCCCCcEEEEEEeCCCHHHHHHH
Confidence 99999999999999999 9999999999999998743 689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000317 507 KSVVQCAVVMAYHLILETSFLVDQRAMFST 536 (1676)
Q Consensus 507 Krvl~dav~vv~~l~lE~s~l~ggGa~~~~ 536 (1676)
||+++||++++++++.+.++|+||||++..
T Consensus 346 er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ 375 (484)
T cd03342 346 KDAIRDGLRAVKNAIEDKCVVPGAGAFEVA 375 (484)
T ss_pred HHHHHHHHHHHHHHhcCCcEEeCCCHHHHH
Confidence 999999999999999999999999999875
No 29
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=99.98 E-value=8.8e-32 Score=333.50 Aligned_cols=221 Identities=25% Similarity=0.321 Sum_probs=209.8
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCCC
Q 000317 268 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 347 (1676)
Q Consensus 268 ~qLL~~~~~sl~sK~~~~W~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GGs~~DS~vI~GVV~~Knvahk~M 347 (1676)
.+|++.+.+++++|....|.+.|++|+++|+..+.++.. .+|. ++|+|++++||++.||++++|++|+|++.|+.|
T Consensus 137 ~~l~~ia~tsl~sK~~~~~~~~l~~l~~~Ai~~v~~~~~---~~~~-~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~m 212 (464)
T cd00309 137 EELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKENG---DVDL-GVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYM 212 (464)
T ss_pred HHHHHHhHhcccccccccchHHHHHHHHHHHHHhccccC---cccc-ceEEEEecCCCCcccceeeeeEEEecCCCCCCC
Confidence 558889999999999999999999999999999987542 4555 699999999999999999999999999999999
Q ss_pred CccccCCcEEEEeeeccccccccccHHHHHHHHHHHHHHHhhHhcCCCeEEEecccccHHHHHHHHHcCCeEeecCCHHH
Q 000317 348 PTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHR 427 (1676)
Q Consensus 348 ~~~i~nPRILLL~~~LEy~r~el~Sle~i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L~~~gItvv~nVK~~~ 427 (1676)
++.++||||+|++++|+| ||+++++|++.|+++|.++||++++++++.+
T Consensus 213 ~~~~~n~~Ili~~~~Le~-------------------------------lIi~~~~I~~~al~~L~~~~I~~v~~~~~~~ 261 (464)
T cd00309 213 PKRLENAKILLLDCKLEY-------------------------------VVIAEKGIDDEALHYLAKLGIMAVRRVRKED 261 (464)
T ss_pred ceeecCceEEEEecCcce-------------------------------EEecCCCcCHHHHHHHHHCCeEEEEeCCHHH
Confidence 999999999999999998 9999999999999999999999999999999
Q ss_pred HHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEEEeCCCHHHHHHH
Q 000317 428 LERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLLKGSNSDELKRI 506 (1676)
Q Consensus 428 LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~gcTILLRG~s~~~L~ev 506 (1676)
|+|||++|||+++++++ ++...||+|+.|++.+++. ++|++|+||....+|||+|||++..+|+|+
T Consensus 262 L~~Ia~~tGa~ii~~~~~~~~~~lG~~~~v~~~~~g~-------------~~~~~~~~~~~~~~~TIllrG~t~~~l~e~ 328 (464)
T cd00309 262 LERIAKATGATIVSRLEDLTPEDLGTAGLVEETKIGD-------------EKYTFIEGCKGGKVATILLRGATEVELDEA 328 (464)
T ss_pred HHHHHHHhCCEEecccccCCcccCccccEEEEEEEcC-------------eeEEEEEecCCCCEEEEEEeCCcHHHHHHH
Confidence 99999999999999999 9999999999999999753 789999999989999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000317 507 KSVVQCAVVMAYHLILETSFLVDQRAMFST 536 (1676)
Q Consensus 507 Krvl~dav~vv~~l~lE~s~l~ggGa~~~~ 536 (1676)
||+++||++++++++.++.+++|||++|..
T Consensus 329 ~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ 358 (464)
T cd00309 329 ERSLHDALCAVRAAVEDGGIVPGGGAAEIE 358 (464)
T ss_pred HHHHHHHHHHHHHHHHcCCcccCCcHHHHH
Confidence 999999999999999999999999999975
No 30
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.98 E-value=2.7e-31 Score=333.32 Aligned_cols=250 Identities=19% Similarity=0.266 Sum_probs=228.5
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCCC
Q 000317 268 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 347 (1676)
Q Consensus 268 ~qLL~~~~~sl~sK~~~~W~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GGs~~DS~vI~GVV~~Knvahk~M 347 (1676)
..|++.+.+++++|..+. .+.|++|+++|+..+.++. .+.+|+ +.|+|+|++||+..||++++|++|++... .|
T Consensus 149 ~~l~~i~~tsl~sK~~~~-~~~ls~l~~~Ai~~v~~~~--~~~~~~-~~I~i~ki~G~s~~ds~li~Gi~~~~~~~--~~ 222 (531)
T TIGR02346 149 KELIKALKASISSKQYGN-EDFLAQLVAKACSTVMPKN--PENFNV-DNIRVSKIMGGSISNSEVLKGMVFNREAE--GS 222 (531)
T ss_pred HHHHHHHHHHhccccCch-HHHHHHHHHHHHHHHhhcC--CCcCCh-hHeeEEEecCCChhhceeEeeeEEeccCC--CC
Confidence 457788888899998888 9999999999999998642 235788 58999999999999999999999999965 58
Q ss_pred CccccCCcEEEEeeeccccccc------ccc---HHH-HHHHHHHHHHHHhhHhcCCCeEEEecccccHHHHHHHHHcCC
Q 000317 348 PTEYKNPRLLLIRGVLGLSSSG------LSS---FKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGM 417 (1676)
Q Consensus 348 ~~~i~nPRILLL~~~LEy~r~e------l~S---le~-i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L~~~gI 417 (1676)
|+.++||||+|+++||++.+.+ +.+ +.. ...|.++++.++++|++.|++||+++++|++.|++||.++||
T Consensus 223 ~k~i~n~kI~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~I 302 (531)
T TIGR02346 223 VKRVKNAKVAVFSCPLDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYNI 302 (531)
T ss_pred ceeccCCCEEEEecCcCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCCc
Confidence 9999999999999999998765 444 556 788999999999999999999999999999999999999999
Q ss_pred eEeecCCHHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCC-CCceEEEEE
Q 000317 418 TLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCP-TRLGCTVLL 495 (1676)
Q Consensus 418 tvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~-~~~gcTILL 495 (1676)
.++++++..+|+|||++|||+++++++ ++..+||+|+.|++++++. +.|.+|++|. ....|||+|
T Consensus 303 ~av~~~~~~~l~~Ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~-------------~~~~~i~~~~~~~~~~tI~l 369 (531)
T TIGR02346 303 MVLKIPSKFELRRLCKTVGATPLARLGAPQPEEIGYVDSVYVSEIGG-------------QKVTVFKQENGDSKISTIIL 369 (531)
T ss_pred EEEecCCHHHHHHHHHHHCCEEecccccCCHhHccccceEEEEEECC-------------EEEEEEEccCCCCCeEEEEE
Confidence 999999999999999999999999999 9888999999999999642 5799999998 478999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000317 496 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 536 (1676)
Q Consensus 496 RG~s~~~L~evKrvl~dav~vv~~l~lE~s~l~ggGa~~~~ 536 (1676)
||+|..+++|+||.++||++++++++.+..+|+||||++..
T Consensus 370 rG~t~~~l~E~er~i~DAl~~~k~ai~~~~vVpGGG~~e~~ 410 (531)
T TIGR02346 370 RGSTKNLLDDIERAIDDGVNVIKALVKDNRFLPGAGATEIE 410 (531)
T ss_pred ECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHH
Confidence 99999999999999999999999999999999999999875
No 31
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=99.97 E-value=4.2e-31 Score=328.50 Aligned_cols=249 Identities=27% Similarity=0.426 Sum_probs=231.7
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCCC
Q 000317 268 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 347 (1676)
Q Consensus 268 ~qLL~~~~~sl~sK~~~~W~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GGs~~DS~vI~GVV~~Knvahk~M 347 (1676)
+.|++.+.+++.+|....|.+.|++|+++|+..+..+ +|+. .++|+++.||+..||++++|++|++.+++.+|
T Consensus 117 ~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~------~~~~-~i~i~~i~g~~~~dS~li~Giv~~~~~~~~~~ 189 (485)
T PF00118_consen 117 ESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSN------FDLD-NIKIIKIPGGSISDSELINGIVLDKGFSSPNM 189 (485)
T ss_dssp HHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTT------HHGG-GEEEEEEESSSSGGEEEESEEEESSSBSSTTS
T ss_pred hhhhhhhcccccccccccchhhhhhhHHHHHHhhccc------cccc-chhhhhhccccccccccccceeeecccccccc
Confidence 6788999999999999999999999999999555432 6774 59999999999999999999999999999999
Q ss_pred CccccCCcEEEEeeecccccc-c-------cccHHH-HHHHHHHHHHHHhhHhcCCCeEEEecccccHHHHHHHHHcCCe
Q 000317 348 PTEYKNPRLLLIRGVLGLSSS-G-------LSSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMT 418 (1676)
Q Consensus 348 ~~~i~nPRILLL~~~LEy~r~-e-------l~Sle~-i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L~~~gIt 418 (1676)
+++++||||++++++|++.+. + ...++. .++|+++++.++++|.+.+++|||++++|++.|+++|.++||.
T Consensus 190 ~~~~~~~~Ill~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~ 269 (485)
T PF00118_consen 190 PKKIENPKILLLNCPLEYSKSFKSEIRITSPEQLDELSKQEKKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGIL 269 (485)
T ss_dssp BSEEESEEEEEESSEBSSCCHSTEEEEESSTHHHHHHHHHHHHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTHE
T ss_pred ccccccceEEeeecccccccccccccchhhHHHHHHHHhhhhhhhccccceEeeeccceeeeecccccccchhhhhhhhh
Confidence 999999999999999999876 1 345777 8999999999999999999999999999999999999999999
Q ss_pred EeecCCHHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEE--cCCCCceEEEEE
Q 000317 419 LVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIE--GCPTRLGCTVLL 495 (1676)
Q Consensus 419 vv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffe--Gc~~~~gcTILL 495 (1676)
++.+|+..+|+|||++|||.++++++ +.+..+|+|+.+++..++. +.|++|+ +|.....|||+|
T Consensus 270 ~i~~v~~~~l~~i~~~tg~~ii~~~~~l~~~~lG~~~~v~~~~i~~-------------~~~~~~~~~~~~~~~~~Till 336 (485)
T PF00118_consen 270 VIRRVSKEDLERIARATGASIISSLDDLSDEDLGFCKSVEEREIGN-------------KKYIFIEGIGCLSSKICTILL 336 (485)
T ss_dssp EESSEHHHHHHHHHHHHTSBEBSSCGGSTGGGSEEEEEEEEEEETS-------------SEEEEEEEHSESSSSEEEEEE
T ss_pred ccccchHHHHHhhhcccCCcEecccccccchhhhhhhhhhhccccc-------------ccccccccccccccCceEEEe
Confidence 99999999999999999999999999 9888899999998888743 7899999 699999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000317 496 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 536 (1676)
Q Consensus 496 RG~s~~~L~evKrvl~dav~vv~~l~lE~s~l~ggGa~~~~ 536 (1676)
||++..+++++||++++|++++++++.++.+++|||++|..
T Consensus 337 ~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~ 377 (485)
T PF00118_consen 337 RGPTEFELEERERSIHDALKVLRSALKDGGVVPGGGATELH 377 (485)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhh
Confidence 99999999999999999999999999999999999999875
No 32
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.4e-31 Score=301.22 Aligned_cols=256 Identities=18% Similarity=0.248 Sum_probs=231.8
Q ss_pred HHHHHHhhcccCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCC
Q 000317 267 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 346 (1676)
Q Consensus 267 l~qLL~~~~~sl~sK~~~~W~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GGs~~DS~vI~GVV~~Knvahk~ 346 (1676)
..+|++.+.++|+||..+++...|++++++|+..|... .+....|++ .|||.|-.||.+.|+++|+|+||++......
T Consensus 154 re~Li~~atTsLnSKvvSq~s~llapmAVdAV~kv~dp-~~~~nvdlk-dIkivkklGgtvdDte~i~glvl~~~~~~~~ 231 (534)
T KOG0358|consen 154 RESLIKSATTSLNSKVVSQYSSLLAPMAVDAVLKVIDP-ENATNVDLK-DIKIVKKLGGTVDDTELIKGLVLTQKASKSA 231 (534)
T ss_pred HHHHHHHHHhHhhHHHHHhhccccchHHHHHHHhccCc-ccccccchh-hhhhHHhhCCccchhhhhcceEEeeecccCC
Confidence 35699999999999999999999999999999988642 233457884 8899999999999999999999999988777
Q ss_pred CCccccCCcEEEEeeeccccccc------c---ccHHH-HHHHHHHHHHHHhhHhcCCCeEEEecccc-----cHHHHHH
Q 000317 347 MPTEYKNPRLLLIRGVLGLSSSG------L---SSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTV-----SRDIQES 411 (1676)
Q Consensus 347 M~~~i~nPRILLL~~~LEy~r~e------l---~Sle~-i~QE~eyL~~lV~rI~~~~pnVVLveksV-----s~~Al~~ 411 (1676)
-|++++++||.+++|.|...++. + ..++. ++.|+.||.+++++|.+.|.||+|+||+| +++|++|
T Consensus 232 gptriekAkIglIQF~iS~PKtdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHf 311 (534)
T KOG0358|consen 232 GPTRIEKAKIGLIQFQISPPKTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHF 311 (534)
T ss_pred CcchhhhceeeEEEEEecCCCCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHH
Confidence 89999999999999999999875 2 24788 99999999999999999999999999985 8999999
Q ss_pred HHHcCCeEeecCCHHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCC-Cc
Q 000317 412 ILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPT-RL 489 (1676)
Q Consensus 412 L~~~gItvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~-~~ 489 (1676)
|.+.+|+|+..|.+.++|.||+.+|+.++.++| +++.+||+++.+++..-. +..+++.+.|+.+ ..
T Consensus 312 L~klkimvikdieRediefick~l~c~Pia~id~f~~d~Lg~adlveE~~~~------------G~gkivk~tg~~n~g~ 379 (534)
T KOG0358|consen 312 LAKLKIMVIKDIEREDIEFICKTLGCKPIADIDHFTADKLGSADLVEETDSS------------GEGKIVKITGIQNAGR 379 (534)
T ss_pred HHhCcEEEEccccHhhHHHHHhhcCCeecchhhhcChhhcCcchhhhhcccC------------CCccEEEEEEeecCCC
Confidence 999999999999999999999999999999999 999999999987765321 2347999999987 68
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000317 490 GCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 536 (1676)
Q Consensus 490 gcTILLRG~s~~~L~evKrvl~dav~vv~~l~lE~s~l~ggGa~~~~ 536 (1676)
+||||+||++.-+|+|.+|++|||+|+++.|.+.+.+++|||+-+++
T Consensus 380 tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GGGapEie 426 (534)
T KOG0358|consen 380 TVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGGGAPEIE 426 (534)
T ss_pred ceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCCCCcchH
Confidence 99999999999999999999999999999999999999999998775
No 33
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.97 E-value=2.2e-30 Score=321.19 Aligned_cols=222 Identities=18% Similarity=0.259 Sum_probs=205.0
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCCC
Q 000317 268 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 347 (1676)
Q Consensus 268 ~qLL~~~~~sl~sK~~~~W~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GGs~~DS~vI~GVV~~Knvahk~M 347 (1676)
..|...+.+++.+|... |.+.|++|+++|+..+.++. .+.+|+ +.|+|+|++||++.||++++|++|++++. .|
T Consensus 139 ~~l~~i~~t~l~sk~~~-~~~~l~~l~~~a~~~~~~~~--~~~~~~-~~i~i~ki~Gg~~~ds~lv~Giv~~~~~~--~~ 212 (472)
T cd03341 139 EEVSKALKTAIASKQYG-NEDFLSPLVAEACISVLPEN--IGNFNV-DNIRVVKILGGSLEDSKVVRGMVFKREPE--GS 212 (472)
T ss_pred HHHHHHHHHHhcccccc-hHHHHHHHHHHHHHHHhhcc--CCcCCh-hHeEEEEecCCCcccceEEeeEEEccccC--CC
Confidence 45677788889999865 89999999999999998752 246888 58999999999999999999999988765 45
Q ss_pred CccccCCcEEEEeeeccccccccccHHHHHHHHHHHHHHHhhHhcCCCeEEEecccccHHHHHHHHHcCCeEeecCCHHH
Q 000317 348 PTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHR 427 (1676)
Q Consensus 348 ~~~i~nPRILLL~~~LEy~r~el~Sle~i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L~~~gItvv~nVK~~~ 427 (1676)
+++++||||+|++++|++ |++||+++++|++.|++||.++||++++++++.+
T Consensus 213 ~~~~~n~~Ili~~~~Le~----------------------------g~~lvi~~~~I~d~al~~l~~~~I~av~~~~~~~ 264 (472)
T cd03341 213 VKRVKKAKVAVFSCPFDI----------------------------GVNVIVAGGSVGDLALHYCNKYGIMVIKINSKFE 264 (472)
T ss_pred ceeccCCcEEEEeccccC----------------------------CCeEEEECCCCCHHHHHHHHHCCeEEEEeCCHHH
Confidence 689999999999999998 8999999999999999999999999999999999
Q ss_pred HHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCC-CceEEEEEeCCCHHHHHH
Q 000317 428 LERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPT-RLGCTVLLKGSNSDELKR 505 (1676)
Q Consensus 428 LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~-~~gcTILLRG~s~~~L~e 505 (1676)
|+|||++|||+++++++ ++...||+|+.|++++++ +++|++|+||.. ..+|||+|||++..+++|
T Consensus 265 Le~Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig-------------~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E 331 (472)
T cd03341 265 LRRLCRTVGATPLPRLGAPTPEEIGYCDSVYVEEIG-------------DTKVVVFRQNKEDSKIATIVLRGATQNILDD 331 (472)
T ss_pred HHHHHHHhCCEEecccccCCHhHCCCceEEEEEEEC-------------CeeEEEEEccCCCCCeEEEEEECCCHHHHHH
Confidence 99999999999999999 999999999999999974 278999999987 889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000317 506 IKSVVQCAVVMAYHLILETSFLVDQRAMFST 536 (1676)
Q Consensus 506 vKrvl~dav~vv~~l~lE~s~l~ggGa~~~~ 536 (1676)
+||.++||++++++++.++++|+|||+++..
T Consensus 332 ~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ 362 (472)
T cd03341 332 VERAIDDGVNVFKSLTKDGRFVPGAGATEIE 362 (472)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEeCcCHHHHH
Confidence 9999999999999999999999999999875
No 34
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-30 Score=293.58 Aligned_cols=267 Identities=18% Similarity=0.214 Sum_probs=241.9
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCCccCcccCeeEEEccCC
Q 000317 249 EEKQRAMEKVVSGK---FKAIVSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAG 325 (1676)
Q Consensus 249 ~~~~~~L~~~~~~h---~~~ll~qLL~~~~~sl~sK~~~~W~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GG 325 (1676)
...+++|...+..+ -.++.+.||+.+.++|+||......++|+.|+++|+..++.. -|+ +.|.|.|++||
T Consensus 130 ~~a~eaL~~~s~dns~~~~kfr~DLl~iarTTL~SKiLsq~kehFaelavdAV~rLkGs------~nL-~~IqIIK~~Gg 202 (527)
T KOG0363|consen 130 AAALEALTKSSIDNSSDKEKFREDLLKIARTTLSSKILSQDKEHFAELAVDAVLRLKGS------TNL-EAIQIIKKLGG 202 (527)
T ss_pred HHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCC------CCc-cceeeehhcCC
Confidence 44556666666654 356678899999999999999999999999999999999753 245 47999999999
Q ss_pred CCCCceeEEeEEEeeccCCCCCCccccCCcEEEEeeeccccccc-------ccc---HHH-HHHHHHHHHHHHhhHhcCC
Q 000317 326 SRNQSQIIKGLVFKKHAAHKHMPTEYKNPRLLLIRGVLGLSSSG-------LSS---FKA-MEQEKDQLKSVMDMIDMCH 394 (1676)
Q Consensus 326 s~~DS~vI~GVV~~Knvahk~M~~~i~nPRILLL~~~LEy~r~e-------l~S---le~-i~QE~eyL~~lV~rI~~~~ 394 (1676)
++.||++-.|++++|.+.- +.|++++||||||-+.+++..+++ +.| +.. -..|++-++..|+||...+
T Consensus 203 ~l~dSfLDeGFlL~K~igv-~qpkriena~iLIANT~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hg 281 (527)
T KOG0363|consen 203 KLEDSFLDEGFLLDKKIGV-NQPKRIENAKILIANTPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHG 281 (527)
T ss_pred ccccccccccceeccccCC-CCcccccccceEEecCCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999998864 679999999999999999999887 334 334 5789999999999999999
Q ss_pred CeEEEecccccHHHHHHHHHcCCeEeecCCHHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCC
Q 000317 395 PNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGK 473 (1676)
Q Consensus 395 pnVVLveksVs~~Al~~L~~~gItvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~ 473 (1676)
.|+.+...-|.++-.++|..+||+.+.+..-.-+||++-+||+.|++++| ....+||+|+.++...+++
T Consensus 282 iN~FiNRQLiYnyPeqLf~dagi~aIEHADFdGiERLalvtGGeI~STFd~p~~~klG~C~~IeeimiGe---------- 351 (527)
T KOG0363|consen 282 INVFINRQLIYNYPEQLFADAGIMAIEHADFDGIERLALVTGGEIVSTFDNPELVKLGECDLIEEIMIGE---------- 351 (527)
T ss_pred CcEEeehhHhhcCHHHHHhhcCcceeecccchhHHHHhhcccceeeeccCCcchhccccchhhHHHhcCc----------
Confidence 99999999999999999999999999999999999999999999999999 9999999999999988765
Q ss_pred CCCceEEEEEcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000317 474 RPSKTLMFIEGCPTRLGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 536 (1676)
Q Consensus 474 ~~~Ktl~ffeGc~~~~gcTILLRG~s~~~L~evKrvl~dav~vv~~l~lE~s~l~ggGa~~~~ 536 (1676)
.+++.|.||.-.-.|||+|||+++++|+|.+|++|||+||+.....|++++.|||+.++-
T Consensus 352 ---d~li~FSGv~~GeActIVlrGat~q~LDEaeRslHDALcVLaqtv~esrvv~GgG~sEm~ 411 (527)
T KOG0363|consen 352 ---DKLIKFSGVKLGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKESRVVLGGGCSEML 411 (527)
T ss_pred ---cceeeecccccccceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccceeeecCCcHHHH
Confidence 589999999988899999999999999999999999999999999999999999998864
No 35
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8e-30 Score=296.65 Aligned_cols=261 Identities=19% Similarity=0.231 Sum_probs=235.8
Q ss_pred HHHHHHHH-HHHhhcccCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEee
Q 000317 262 KFKAIVSQ-LLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKK 340 (1676)
Q Consensus 262 h~~~ll~q-LL~~~~~sl~sK~~~~W~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GGs~~DS~vI~GVV~~K 340 (1676)
.++.+-.| |++.++++++||.+..-.++|+.++++|+..++--..+|...-+-+-|.|.|.+|++..||.++.|..++.
T Consensus 142 ~vd~lg~~~Lin~~ktsmsSK~i~~ds~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS~l~~GyaLnc 221 (545)
T KOG0360|consen 142 PVDSLGTQILINLAKTSMSSKIIGMDSDFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIESMLLPGYALNC 221 (545)
T ss_pred ehhhcchHHHHHHHHhhhcceecccchHHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccchhheeecceeeec
Confidence 34555555 77999999999999999999999999999999865556766777689999999999999999999999999
Q ss_pred ccCCCCCCccccCCcEEEEeeeccccccc------ccc---HHH-HHHHHHHHHHHHhhHhcCCCeEEEecccccHHHHH
Q 000317 341 HAAHKHMPTEYKNPRLLLIRGVLGLSSSG------LSS---FKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQE 410 (1676)
Q Consensus 341 nvahk~M~~~i~nPRILLL~~~LEy~r~e------l~S---le~-i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~ 410 (1676)
.++...||.+|+|+||++|+|.|.-.+.. +.+ ++. .+.|.+..+..+++|++.|+||||++|+|++++++
T Consensus 222 ~~asq~m~~~i~~~Kiacld~~Lqk~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K 301 (545)
T KOG0360|consen 222 SVASQMMPLRIKNAKIACLDFTLQKTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLK 301 (545)
T ss_pred cHhhhccccccccceeeeEecccccccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHH
Confidence 99999999999999999999999877765 344 444 45566777999999999999999999999999999
Q ss_pred HHHHcCCeEeecCCHHHHHHHHHHhCCceecccc-C------CCCCccccceEEEEEeecccccccCCCCCCCceEEEEE
Q 000317 411 SILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-L------TSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIE 483 (1676)
Q Consensus 411 ~L~~~gItvv~nVK~~~LeRIAR~TGA~IvsSid-L------~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffe 483 (1676)
||.++|++.|+|++..+|+|||++|||++++|+- | .+..+|.|+.|.+.+|++ +.++.+.
T Consensus 302 ~~veagamAVrR~~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evvqeri~d-------------de~ilik 368 (545)
T KOG0360|consen 302 YFVEAGAMAVRRCKKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQERIGD-------------DELILIK 368 (545)
T ss_pred HHHHcchhhhHHHHHHHHHHHHHhhCCeeeehhhccccccccChhhccchhHHHHHhccc-------------ceeEEec
Confidence 9999999999999999999999999999999996 4 466799999999999864 6899999
Q ss_pred cCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000317 484 GCPTRLGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 536 (1676)
Q Consensus 484 Gc~~~~gcTILLRG~s~~~L~evKrvl~dav~vv~~l~lE~s~l~ggGa~~~~ 536 (1676)
|.+.. .|+|+|||+|...++|++|.+|+++++++..+.++++++||||++.-
T Consensus 369 g~ka~-~aSiILrgaNd~~~DEmers~hdaL~VlkrtLes~~vvpGGG~vE~a 420 (545)
T KOG0360|consen 369 GTKAT-SASIILRGANDFMLDEMERSLHDALCVLKRTLESKSVVPGGGAVETA 420 (545)
T ss_pred cCccc-eeeEEEecCCcccHhhhccchhhHHHHHHHHhccCccccCccHHHHH
Confidence 98877 99999999999999999999999999999999999999999999864
No 36
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.4e-29 Score=289.90 Aligned_cols=253 Identities=19% Similarity=0.261 Sum_probs=235.9
Q ss_pred HHHHHHhhcccCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCC
Q 000317 267 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 346 (1676)
Q Consensus 267 l~qLL~~~~~sl~sK~~~~W~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GGs~~DS~vI~GVV~~Knvahk~ 346 (1676)
...|+..+.+++.+|....-.+.+++++++|+..+.. ..+.+|+ +.|+|.+..-++..|+.+|+|+|++.+..|..
T Consensus 142 ~~~L~~va~tsl~Tkv~~~la~~lt~~vv~aVl~i~~---~~~~idl-~mveim~mq~~s~~dT~~v~glvLdhg~rHpd 217 (520)
T KOG0359|consen 142 RETLKDVARTSLRTKVHAELADVLTPIVVDSVLCIRR---QEEPIDL-FMVEIMEMQHKSLHDTSLVQGLVLDHGARHPD 217 (520)
T ss_pred HHHHHHHHHHhhcCcccHHHHhHhHHHHHhhheeecc---CCCCcch-hHHHhhhhccCchhhhHHhhhhhccCCCCCcc
Confidence 4557788899999999999999999999999999983 3567899 59999999999999999999999999999999
Q ss_pred CCccccCCcEEEEeeecccccccc------cc---HHH-HHHHHHHHHHHHhhHhcCCC----eEEEecccccHHHHHHH
Q 000317 347 MPTEYKNPRLLLIRGVLGLSSSGL------SS---FKA-MEQEKDQLKSVMDMIDMCHP----NVVLVEKTVSRDIQESI 412 (1676)
Q Consensus 347 M~~~i~nPRILLL~~~LEy~r~el------~S---le~-i~QE~eyL~~lV~rI~~~~p----nVVLveksVs~~Al~~L 412 (1676)
||++++|+-||+++.+|||.++++ ++ -+. +..|++++.+.|.+|+.++- -||+.||+|++..++.|
T Consensus 218 mp~~~e~a~iL~~NvSLEYEK~EinsgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~ 297 (520)
T KOG0359|consen 218 MPRRVEDAYILICNVSLEYEKPEINSGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSL 297 (520)
T ss_pred cccchhceEEEEeeccccccccccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhh
Confidence 999999999999999999999982 33 234 78999999999999998864 57888999999999999
Q ss_pred HHcCCeEeecCCHHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceE
Q 000317 413 LEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGC 491 (1676)
Q Consensus 413 ~~~gItvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~~~gc 491 (1676)
.+.||..+++.|+..|||+..+||+..++|+| |++..||+|+.+++.++++ .+|+|+|+|+++..|
T Consensus 298 a~~gIlaLRRAKRRNmERL~lacGG~a~nsvddLtp~~LG~aglVye~tlGE-------------EkfTFIE~~~~p~S~ 364 (520)
T KOG0359|consen 298 AKSGILALRRAKRRNMERLVLACGGEAVNSVDDLTPDYLGYAGLVYEYTLGE-------------EKFTFIEKCNNPSSV 364 (520)
T ss_pred hhcchHHHHHHhhhhHHHHHHhhccceecccccCChhhccccceeEEeeccc-------------eeeEeeecCCCCcce
Confidence 99999999999999999999999999999999 9999999999999999987 489999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000317 492 TVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 536 (1676)
Q Consensus 492 TILLRG~s~~~L~evKrvl~dav~vv~~l~lE~s~l~ggGa~~~~ 536 (1676)
|||+||+|.+.+..+|.+++|++.+++|.+.+..+++|+|+.+-.
T Consensus 365 TiLikgpnkht~tQikdairdglrav~ntl~d~~~i~Gaga~~va 409 (520)
T KOG0359|consen 365 TILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCGIPGAGAFEVA 409 (520)
T ss_pred EEEEeCCccchHHHHHHHHhhHHHHHHHHhhhcccccCchHHHHH
Confidence 999999999999999999999999999999999999999998864
No 37
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1e-27 Score=297.55 Aligned_cols=244 Identities=20% Similarity=0.203 Sum_probs=224.9
Q ss_pred hhcccCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEee-ccCCCCCC-cc
Q 000317 273 SVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKK-HAAHKHMP-TE 350 (1676)
Q Consensus 273 ~~~~sl~sK~~~~W~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GGs~~DS~vI~GVV~~K-nvahk~M~-~~ 350 (1676)
.+.+++++|....+ +.|+.|+++|+..|..... |+ +.|++.|..||...++.+++|++|+| .+.|..|| +.
T Consensus 143 ~~~t~v~sk~~~~~-~~i~~lv~~Av~~v~~~~~-----d~-~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~~~~~ 215 (524)
T COG0459 143 IAITSVASKSANSD-EEIGELVVEAVEKVGKEQS-----DL-DGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDKR 215 (524)
T ss_pred hhhheeeeeeccCh-HHHHHHHHHHHHHhccccc-----cc-CCeEEEEecCCCccceEEEeeEEecCCccCCCCCCccc
Confidence 36677888888888 9999999999999986431 66 58999999999999999999999999 99999999 89
Q ss_pred ccCCcEEEEeeeccccccc------cc---cHHH-HHHHH-HHHHHHHhhHhcCCCe-EEEecccccHHHHHHHHHcCCe
Q 000317 351 YKNPRLLLIRGVLGLSSSG------LS---SFKA-MEQEK-DQLKSVMDMIDMCHPN-VVLVEKTVSRDIQESILEKGMT 418 (1676)
Q Consensus 351 i~nPRILLL~~~LEy~r~e------l~---Sle~-i~QE~-eyL~~lV~rI~~~~pn-VVLveksVs~~Al~~L~~~gIt 418 (1676)
++||+|||++++|++.+.. +. .+.. .++|+ ++|..+|.+|+..+.| ||+++++|+++|++||.+.+|+
T Consensus 216 ~e~~~Ili~d~~l~~~k~~l~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Il 295 (524)
T COG0459 216 LENPKILLLDKKLEIKKPELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAIL 295 (524)
T ss_pred cccceEEEEccccccccccCcceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcce
Confidence 9999999999999999876 22 3556 68888 9999999999999999 9999999999999999999999
Q ss_pred EeecCCHHHH-HHHHHHhCCceecccc-CCCCCccc--cceEEEEEeecccccccCCCCCCCceEEEEEcCCC--CceEE
Q 000317 419 LVFDMKLHRL-ERVARCTGSPILSSGS-LTSQKLKH--CDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPT--RLGCT 492 (1676)
Q Consensus 419 vv~nVK~~~L-eRIAR~TGA~IvsSid-L~~~~LG~--C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeGc~~--~~gcT 492 (1676)
++++|+.++| +||+++|||.+++.++ ++...+|. |+.++..++++ ..+.+|++|.. ...||
T Consensus 296 t~~~v~~~dl~~~l~~~~ga~~v~~~~d~t~~~~G~~~~~~ve~~~~~~-------------~~~~~~~~~~~~~~~~~t 362 (524)
T COG0459 296 TGRRVKKEDLGERLAKLGGAKIVSVLKDLTTIVLGEGAAGLVEETKTGD-------------YDMEKLQERKAKAGGVAT 362 (524)
T ss_pred ecceecchhhHHHHHHccCceEEeecccCceeecCccccceEEEeeccc-------------hhhhhhhhhhhcCCCeEE
Confidence 9999999999 8999999999999999 99999999 99999998754 47889999985 77899
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000317 493 VLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 536 (1676)
Q Consensus 493 ILLRG~s~~~L~evKrvl~dav~vv~~l~lE~s~l~ggGa~~~~ 536 (1676)
|+|||+++.+++|+||.++|||+++++++.|..+++|||+.+..
T Consensus 363 I~vrgate~~ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~ 406 (524)
T COG0459 363 ILVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIE 406 (524)
T ss_pred EEECCccHhHHHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHH
Confidence 99999999999999999999999999999999999999999975
No 38
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.4e-24 Score=254.99 Aligned_cols=233 Identities=19% Similarity=0.203 Sum_probs=209.9
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCCCCccccCCcEEEEeeecc
Q 000317 285 SWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHMPTEYKNPRLLLIRGVLG 364 (1676)
Q Consensus 285 ~W~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GGs~~DS~vI~GVV~~Knvahk~M~~~i~nPRILLL~~~LE 364 (1676)
.-.+++++|+.+|+..+.|.. .|++ +.|+|+||.||.+.+|+++.|+||+..+. +-+++-+..||++.+||++
T Consensus 170 ~~ed~l~~lVa~ac~si~p~~----~Fnv-dnIrVcKi~Gg~l~~S~Vv~GmVfkr~~e--G~v~~ak~arvAvf~cP~d 242 (537)
T KOG0362|consen 170 GNEDFLTKLVAKACVSILPLM----SFNV-DNIRVCKILGGGLEDSCVVCGMVFKRDPE--GEVKSAKDARVAVFACPFD 242 (537)
T ss_pred chHHHHHHHHHHHHHhhcccc----cccc-cceEEEEEecCCcccceeeEEEEeccccC--CcccccccceeEEEecCCC
Confidence 357899999999999999861 2888 49999999999999999999999998776 4458888999999999999
Q ss_pred ccccc------cccHH---H-HHHHHHHHHHHHhhHhcCCCeEEEecccccHHHHHHHHHcCCeEeecCCHHHHHHHHHH
Q 000317 365 LSSSG------LSSFK---A-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARC 434 (1676)
Q Consensus 365 y~r~e------l~Sle---~-i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L~~~gItvv~nVK~~~LeRIAR~ 434 (1676)
..+++ +.+.+ . -+.|+..++.+|+.|...|++||++.+.|.+++++||.+.+|+|++--++-+|.|++|.
T Consensus 243 ~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnky~ImVlqi~Sk~eLrrlcrt 322 (537)
T KOG0362|consen 243 IAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNKYKIMVLQINSKFDLRRLCRT 322 (537)
T ss_pred cccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhccccEEEEEeccHhhHHHHHHH
Confidence 98887 44544 3 47788889999999999999999999999999999999999999999999999999999
Q ss_pred hCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEE-EcCCCCceEEEEEeCCCHHHHHHHHHHHHH
Q 000317 435 TGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFI-EGCPTRLGCTVLLKGSNSDELKRIKSVVQC 512 (1676)
Q Consensus 435 TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ff-eGc~~~~gcTILLRG~s~~~L~evKrvl~d 512 (1676)
.||.+++.+- +..+.||+|+++.+++++. .+++.| .+|......||+|||++...|+.+||++++
T Consensus 323 vGA~~l~rl~~P~~~~lG~~d~V~~~EiG~-------------~~v~vF~~e~~~~~~~TvVLRgst~s~LDd~ERAVdd 389 (537)
T KOG0362|consen 323 VGATALPRLFPPAPEELGYCDSVSTQEIGD-------------TLVVVFRWESTGTRVATVVLRGATQSILDDAERAVDD 389 (537)
T ss_pred cCCccchhccCCCCccccccceeeeeecCC-------------ceEEEEeeccCCCceeEEEEcccchhhHHHHHHHHHH
Confidence 9999999999 8999999999999999764 355555 456677889999999999999999999999
Q ss_pred HHHHHHHHhhcCeEeecCCcccccC
Q 000317 513 AVVMAYHLILETSFLVDQRAMFSTI 537 (1676)
Q Consensus 513 av~vv~~l~lE~s~l~ggGa~~~~~ 537 (1676)
++++++.+....++++|.||++..+
T Consensus 390 gV~tyK~l~~d~rLlpGagatEieL 414 (537)
T KOG0362|consen 390 GVNTYKALCSDSRLLPGAGATEIEL 414 (537)
T ss_pred hHHHhhhhccCCccccCCchhHHHH
Confidence 9999999999999999999999864
No 39
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=99.91 E-value=2.1e-23 Score=262.07 Aligned_cols=221 Identities=15% Similarity=0.204 Sum_probs=192.4
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCC-
Q 000317 268 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH- 346 (1676)
Q Consensus 268 ~qLL~~~~~sl~sK~~~~W~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GGs~~DS~vI~GVV~~Knvahk~- 346 (1676)
+.|++.+.+++ .+.+.|++|+++|+..+.++ + .|.|++..| ...+|++++|++|++.+.|..
T Consensus 141 ~~l~~va~ts~------~~~~~ls~lv~~Av~~v~~~---g-------~i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~ 203 (542)
T PRK00013 141 EEIAQVATISA------NGDEEIGKLIAEAMEKVGKE---G-------VITVEESKG-FETELEVVEGMQFDRGYLSPYF 203 (542)
T ss_pred HHHHHHHHhcc------cchHHHHHHHHHHHHHhCcC---C-------cEEEEEcCC-CCceEEEEEeEEecCCcccccc
Confidence 34666666643 37899999999999998652 1 378988887 888999999999999999885
Q ss_pred ------CCccccCCcEEEEeeeccccccccccHHHHHHHHHHHHHHHhhHhcCCCeEEEecccccHHHHHHHHHcC----
Q 000317 347 ------MPTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG---- 416 (1676)
Q Consensus 347 ------M~~~i~nPRILLL~~~LEy~r~el~Sle~i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L~~~g---- 416 (1676)
|++.++||+||++++.|.- . +.+..++++|.+.+++|||++++|++.|+++|..++
T Consensus 204 ~~~~~~~~~~~~n~~Ilv~d~~i~~-------~-------~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~ 269 (542)
T PRK00013 204 VTDPEKMEAELENPYILITDKKISN-------I-------QDLLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGT 269 (542)
T ss_pred cccccCCeEEEecCEEEEEcCccCC-------H-------HHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCccc
Confidence 4889999999999996532 2 224577899999999999999999999999999997
Q ss_pred --CeEeecCC-----HHHHHHHHHHhCCceec-----ccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEE
Q 000317 417 --MTLVFDMK-----LHRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIE 483 (1676)
Q Consensus 417 --Itvv~nVK-----~~~LeRIAR~TGA~Ivs-----Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffe 483 (1676)
|.+|++++ +.+|+|||++|||.+++ +++ ++..+||+|+.|++.+ ++++||+
T Consensus 270 ~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~ 333 (542)
T PRK00013 270 LKVVAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTK----------------DNTTIVD 333 (542)
T ss_pred ceEEEEecCCcccchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEec----------------CEEEEEe
Confidence 99999887 88999999999999999 788 8888999999999864 5889999
Q ss_pred cCCCCc-----------------------------------eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEee
Q 000317 484 GCPTRL-----------------------------------GCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLV 528 (1676)
Q Consensus 484 Gc~~~~-----------------------------------gcTILLRG~s~~~L~evKrvl~dav~vv~~l~lE~s~l~ 528 (1676)
||..+. .|||+|||+|+.+++|+||.++||++++++++.+. ||+
T Consensus 334 ~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g-~Vp 412 (542)
T PRK00013 334 GAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEG-IVP 412 (542)
T ss_pred CCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccc
Confidence 998765 78999999999999999999999999999999985 999
Q ss_pred cCCccccc
Q 000317 529 DQRAMFST 536 (1676)
Q Consensus 529 ggGa~~~~ 536 (1676)
||||++..
T Consensus 413 GGGa~e~~ 420 (542)
T PRK00013 413 GGGVALLR 420 (542)
T ss_pred CcHHHHHH
Confidence 99999875
No 40
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=99.91 E-value=3e-23 Score=259.91 Aligned_cols=221 Identities=16% Similarity=0.234 Sum_probs=190.2
Q ss_pred HHHHHHhhcccCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCCccCcccCeeEEEccCCCCCC-ceeEEeEEEeeccCCC
Q 000317 267 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQ-SQIIKGLVFKKHAAHK 345 (1676)
Q Consensus 267 l~qLL~~~~~sl~sK~~~~W~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GGs~~D-S~vI~GVV~~Knvahk 345 (1676)
..+|++.+.+++++ .+.|++|+++|+..+.++ + .|.| .+||+..| +++++|++|.+.+.|.
T Consensus 138 ~~~l~~va~ts~~~------~~~l~~lv~~A~~~v~~~---~-------~i~v--~~g~~~~d~~~~~~G~~~~~g~~~~ 199 (520)
T cd03344 138 KEEIAQVATISANG------DEEIGELIAEAMEKVGKD---G-------VITV--EEGKTLETELEVVEGMQFDRGYLSP 199 (520)
T ss_pred HHHHHHHHHHhcCC------hHHHHHHHHHHHHHhccC---C-------cEEE--EeCCCcceeEEEEeeEEecCCCCCC
Confidence 34577777776643 688999999999988642 1 2334 58999999 7999999999998887
Q ss_pred CC-------CccccCCcEEEEeeeccccccccccHHHHHHHHHHHHHHHhhHhcCCCeEEEecccccHHHHHHHHHcCC-
Q 000317 346 HM-------PTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGM- 417 (1676)
Q Consensus 346 ~M-------~~~i~nPRILLL~~~LEy~r~el~Sle~i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L~~~gI- 417 (1676)
.| +.+++||+|++++++|... +.+..++++|.+.+++|||++++|++.|+++|.++||
T Consensus 200 ~~~~~~~~~~~~~~n~~Ili~d~~l~~~--------------~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~ 265 (520)
T cd03344 200 YFVTDPEKMEVELENPYILLTDKKISSI--------------QELLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLR 265 (520)
T ss_pred ccccCcccCeEEeeCCEEEEECCCCCCH--------------HHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCc
Confidence 65 4679999999999996432 1245578999999999999999999999999999999
Q ss_pred -----eEeecC-----CHHHHHHHHHHhCCceec-----ccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEE
Q 000317 418 -----TLVFDM-----KLHRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMF 481 (1676)
Q Consensus 418 -----tvv~nV-----K~~~LeRIAR~TGA~Ivs-----Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~f 481 (1676)
.+|+.+ ++++|+|||++|||.+++ +++ +....||+|+.|++.+ .+++|
T Consensus 266 ~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~ 329 (520)
T cd03344 266 GGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTK----------------DDTTI 329 (520)
T ss_pred cCceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEee----------------ceEEE
Confidence 887766 899999999999999999 777 8878899999999876 47899
Q ss_pred EEcCCCC-----------------------------------ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeE
Q 000317 482 IEGCPTR-----------------------------------LGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSF 526 (1676)
Q Consensus 482 feGc~~~-----------------------------------~gcTILLRG~s~~~L~evKrvl~dav~vv~~l~lE~s~ 526 (1676)
|+||..+ ..|||+|||+|+.+++|++|.++||++++++++.+. |
T Consensus 330 i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g-~ 408 (520)
T cd03344 330 IGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEG-I 408 (520)
T ss_pred EeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcC-C
Confidence 9999765 589999999999999999999999999999999995 9
Q ss_pred eecCCccccc
Q 000317 527 LVDQRAMFST 536 (1676)
Q Consensus 527 l~ggGa~~~~ 536 (1676)
|+||||++..
T Consensus 409 VpGGGa~e~~ 418 (520)
T cd03344 409 VPGGGVALLR 418 (520)
T ss_pred CcCCcHHHHH
Confidence 9999999875
No 41
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=99.91 E-value=4.4e-23 Score=259.21 Aligned_cols=220 Identities=15% Similarity=0.207 Sum_probs=187.6
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCCccCcccCeeEEEccCCCCCC-ceeEEeEEEeeccCCCC
Q 000317 268 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQ-SQIIKGLVFKKHAAHKH 346 (1676)
Q Consensus 268 ~qLL~~~~~sl~sK~~~~W~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GGs~~D-S~vI~GVV~~Knvahk~ 346 (1676)
+.|++.+.+++ .+.+.|++|+++|+..+.++ + ++.|+ .||...| +++++|++|++.+.|..
T Consensus 141 ~~l~~va~ts~------~~~~~l~~lv~~Av~~v~~~---g-------~i~i~--~g~~~~d~~~~v~G~~~~~g~~~~~ 202 (542)
T PRK12849 141 EEIAQVATISA------NGDEEIGELIAEAMEKVGKD---G-------VITVE--ESKTLETELEVTEGMQFDRGYLSPY 202 (542)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHHhccC---C-------cEeEE--eCCCcceeEEEEEeEEEecCcccCc
Confidence 34667776643 37799999999999998653 2 23343 6999887 79999999999999884
Q ss_pred -------CCccccCCcEEEEeeeccccccccccHHHHHHHHHHHHHHHhhHhcCCCeEEEecccccHHHHHHHHHc----
Q 000317 347 -------MPTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEK---- 415 (1676)
Q Consensus 347 -------M~~~i~nPRILLL~~~LEy~r~el~Sle~i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L~~~---- 415 (1676)
|++.++||+||++++.|. +. +.+..++++|.+.+++|||++++|++.|+++|.++
T Consensus 203 ~~~~~~~~~~~~~n~~Ili~d~~i~-------~~-------~~~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~ 268 (542)
T PRK12849 203 FVTDPERMEAVLEDPLILLTDKKIS-------SL-------QDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRG 268 (542)
T ss_pred ccccccCceEEeeCcEEEeecCCcC-------CH-------HHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhc
Confidence 589999999999999653 22 22445789999999999999999999999999999
Q ss_pred --CCeEeecCC-----HHHHHHHHHHhCCceec-----ccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEE
Q 000317 416 --GMTLVFDMK-----LHRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFI 482 (1676)
Q Consensus 416 --gItvv~nVK-----~~~LeRIAR~TGA~Ivs-----Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ff 482 (1676)
||++|++++ +.+|+|||++|||.+++ +++ ++..+||+|+.|++.+ +++++|
T Consensus 269 ~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i 332 (542)
T PRK12849 269 GLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITK----------------DNTTIV 332 (542)
T ss_pred cccEEEEeCCCccchhHhHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEee----------------eeEEEE
Confidence 999999887 55599999999999999 577 8888899999999764 478889
Q ss_pred EcCCCC-----------------------------------ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEe
Q 000317 483 EGCPTR-----------------------------------LGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFL 527 (1676)
Q Consensus 483 eGc~~~-----------------------------------~gcTILLRG~s~~~L~evKrvl~dav~vv~~l~lE~s~l 527 (1676)
+||..+ ..|||+|||+|..+|+|+||.++||++++++++.+. ||
T Consensus 333 ~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g-~V 411 (542)
T PRK12849 333 DGAGDKEAIEARVAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEG-IV 411 (542)
T ss_pred eCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ee
Confidence 999875 389999999999999999999999999999999985 99
Q ss_pred ecCCccccc
Q 000317 528 VDQRAMFST 536 (1676)
Q Consensus 528 ~ggGa~~~~ 536 (1676)
+||||++..
T Consensus 412 pGGGa~e~~ 420 (542)
T PRK12849 412 PGGGVALLR 420 (542)
T ss_pred cCCCHHHHH
Confidence 999999875
No 42
>PTZ00114 Heat shock protein 60; Provisional
Probab=99.90 E-value=7.7e-23 Score=257.99 Aligned_cols=220 Identities=12% Similarity=0.181 Sum_probs=189.7
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCCccCcccCeeEEEccCCCCCCc-eeEEeEEEeeccCCCC
Q 000317 268 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQS-QIIKGLVFKKHAAHKH 346 (1676)
Q Consensus 268 ~qLL~~~~~sl~sK~~~~W~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GGs~~DS-~vI~GVV~~Knvahk~ 346 (1676)
.+|++.+.+++. +.+.|++|+++|+..+.++ | .|.++.||+..|| ++++|++|.+.+.|..
T Consensus 153 ~~l~~va~ts~~------~~~~l~~li~eAv~~vg~~---g---------~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~ 214 (555)
T PTZ00114 153 EDILNVATISAN------GDVEIGSLIADAMDKVGKD---G---------TITVEDGKTLEDELEVVEGMSFDRGYISPY 214 (555)
T ss_pred HHHHHHHHHHcC------ChHHHHHHHHHHHHHhCcC---C---------cEEEcCCCCccceEEEEEEEEEeccccccc
Confidence 457777777543 3568999999999998653 1 2888999999999 7999999999998876
Q ss_pred -------CCccccCCcEEEEeeeccccccccccHHHHHHHHHHHHHHHhhHhcCCCeEEEecccccHHHHHHHHHcC---
Q 000317 347 -------MPTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG--- 416 (1676)
Q Consensus 347 -------M~~~i~nPRILLL~~~LEy~r~el~Sle~i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L~~~g--- 416 (1676)
|+..++||+||+++++|+.. +.+..++++|.+.+.+|||++++|++.|+++|..++
T Consensus 215 ~~~~~~~~~~~l~~~~Ili~d~~L~~~--------------~~i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g 280 (555)
T PTZ00114 215 FVTNEKTQKVELENPLILVTDKKISSI--------------QSILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRG 280 (555)
T ss_pred cccccccCeEEecCCEEEEEcCCCCCH--------------HHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCC
Confidence 48899999999999999831 126677889999999999999999999999999996
Q ss_pred ---CeEeec-----CCHHHHHHHHHHhCCceeccc------c-CCCCCccccceEEEEEeecccccccCCCCCCCceEEE
Q 000317 417 ---MTLVFD-----MKLHRLERVARCTGSPILSSG------S-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMF 481 (1676)
Q Consensus 417 ---Itvv~n-----VK~~~LeRIAR~TGA~IvsSi------d-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~f 481 (1676)
|.+|++ +++.+|+|||++|||.++++. + ++...||+|+.|++.+ ..+++
T Consensus 281 ~~~i~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~----------------~~~~~ 344 (555)
T PTZ00114 281 GLKVCAVKAPGFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTK----------------DETVI 344 (555)
T ss_pred ceEEEEEecCCCCcchHHHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEe----------------ceEEE
Confidence 899977 788999999999999999998 5 6777899999999987 13556
Q ss_pred EEcCC-----------------------------------CCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeE
Q 000317 482 IEGCP-----------------------------------TRLGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSF 526 (1676)
Q Consensus 482 feGc~-----------------------------------~~~gcTILLRG~s~~~L~evKrvl~dav~vv~~l~lE~s~ 526 (1676)
|+||. .+..|||+|||+|+.+++|+||.++||++++++++.+. |
T Consensus 345 ~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~g-v 423 (555)
T PTZ00114 345 LTGGGDKAEIKERVELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEG-I 423 (555)
T ss_pred EeCCCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-c
Confidence 66665 56799999999999999999999999999999998865 9
Q ss_pred eecCCccccc
Q 000317 527 LVDQRAMFST 536 (1676)
Q Consensus 527 l~ggGa~~~~ 536 (1676)
|+||||++..
T Consensus 424 VpGGGa~e~~ 433 (555)
T PTZ00114 424 VPGGGVALLR 433 (555)
T ss_pred ccCCcHHHHH
Confidence 9999999875
No 43
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=99.90 E-value=8.8e-23 Score=256.63 Aligned_cols=220 Identities=15% Similarity=0.220 Sum_probs=190.1
Q ss_pred HHHHhhcccCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCC--
Q 000317 269 QLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH-- 346 (1676)
Q Consensus 269 qLL~~~~~sl~sK~~~~W~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GGs~~DS~vI~GVV~~Knvahk~-- 346 (1676)
.|++.+.+++ .+.+.|++|+++|+..+.++ + .|.|.+.. |...++++++|++|.+...|..
T Consensus 143 ~l~~va~~s~------~~~~~l~~lv~~Av~~vg~~---g-------~i~i~~~~-~~~~~~~~~~G~~~~~g~~~~~~~ 205 (541)
T PRK12851 143 EIAQVATISA------NGDAEIGRLVAEAMEKVGNE---G-------VITVEESK-TAETELEVVEGMQFDRGYLSPYFV 205 (541)
T ss_pred HHHHHHHHhc------cChHHHHHHHHHHHHHhccc---C-------ceEEEEcc-CCCcceEEEEEEEecCCccccccc
Confidence 3555555532 47899999999999998642 1 35676766 6778999999999999999884
Q ss_pred -----CCccccCCcEEEEeeeccccccccccHHHHHHHHHHHHHHHhhHhcCCCeEEEecccccHHHHHHHHHcCC----
Q 000317 347 -----MPTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGM---- 417 (1676)
Q Consensus 347 -----M~~~i~nPRILLL~~~LEy~r~el~Sle~i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L~~~gI---- 417 (1676)
|++.++||+||+++++|+. + +.+..++++|.+.+++|||++++|++.|+++|..+||
T Consensus 206 ~~~~~~~~~~~~~~Ilv~d~~i~~-------~-------~~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~ 271 (541)
T PRK12851 206 TDADKMEAELEDPYILIHEKKISN-------L-------QDLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGL 271 (541)
T ss_pred cCCCCCeEEecccEEEEEcCCcCc-------H-------HHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCce
Confidence 9999999999999998642 1 1266788999999999999999999999999999997
Q ss_pred --eEeec-----CCHHHHHHHHHHhCCceec-----ccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEc
Q 000317 418 --TLVFD-----MKLHRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEG 484 (1676)
Q Consensus 418 --tvv~n-----VK~~~LeRIAR~TGA~Ivs-----Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffeG 484 (1676)
.+|++ +++.+|+|||++|||.+++ +++ ++...||+|+.|++.+ +++++|+|
T Consensus 272 ~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~~ 335 (541)
T PRK12851 272 KVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEK----------------ENTTIIDG 335 (541)
T ss_pred eEEEEecCccccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEc----------------ceEEEEcC
Confidence 78885 9999999999999999999 677 7888899999998876 47899999
Q ss_pred CCCCc-----------------------------------eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeec
Q 000317 485 CPTRL-----------------------------------GCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVD 529 (1676)
Q Consensus 485 c~~~~-----------------------------------gcTILLRG~s~~~L~evKrvl~dav~vv~~l~lE~s~l~g 529 (1676)
|..+. .|||+|||+|..+++|+||.++||++++++++.+. ||+|
T Consensus 336 ~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g-~VpG 414 (541)
T PRK12851 336 AGSKTEIEGRVAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEG-IVPG 414 (541)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccC
Confidence 97653 78999999999999999999999999999999995 9999
Q ss_pred CCccccc
Q 000317 530 QRAMFST 536 (1676)
Q Consensus 530 gGa~~~~ 536 (1676)
|||++..
T Consensus 415 GGa~e~~ 421 (541)
T PRK12851 415 GGVALLR 421 (541)
T ss_pred chHHHHH
Confidence 9999875
No 44
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=99.90 E-value=1.5e-22 Score=253.99 Aligned_cols=220 Identities=15% Similarity=0.221 Sum_probs=187.7
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCCccCcccCeeEEEccCCCC-CCceeEEeEEEeeccCCCC
Q 000317 268 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSR-NQSQIIKGLVFKKHAAHKH 346 (1676)
Q Consensus 268 ~qLL~~~~~sl~sK~~~~W~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GGs~-~DS~vI~GVV~~Knvahk~ 346 (1676)
.+|++.+.++. .+.+.|++++++|+..+.++ + .|.|+. ||.. .+|++++|++|++.+.|..
T Consensus 140 ~~l~~va~ts~------~~~~~l~~lv~~A~~~v~~~---~-------~i~v~~--g~~~~~~s~~v~G~~~~~g~~~~~ 201 (524)
T TIGR02348 140 KEIAQVATISA------NNDEEIGSLIAEAMEKVGKD---G-------VITVEE--SKSLETELEVVEGMQFDRGYISPY 201 (524)
T ss_pred HHHHHHHHHhc------cChHHHHHHHHHHHHHhCcC---C-------cEeeec--CCCccccEEEEEeEEEcCCCCCcc
Confidence 45677776643 36789999999999998653 1 233443 6666 6699999999999999886
Q ss_pred C-------CccccCCcEEEEeeeccccccccccHHHHHHHHHHHHHHHhhHhcCCCeEEEecccccHHHHHHHHHc----
Q 000317 347 M-------PTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEK---- 415 (1676)
Q Consensus 347 M-------~~~i~nPRILLL~~~LEy~r~el~Sle~i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L~~~---- 415 (1676)
| ++.++||+||++++.|.- . +.+..++++|.+.+++|||++++|++.|+++|..+
T Consensus 202 ~~~~~~~~~~~~~n~~Ili~d~~i~~-------~-------~~i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~ 267 (524)
T TIGR02348 202 FVTDAEKMEVELENPYILITDKKISN-------I-------KDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRG 267 (524)
T ss_pred cccCccCCeEEeeCceeeeccCCcCC-------H-------HHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhccc
Confidence 5 888999999999997542 1 12577889999999999999999999999999986
Q ss_pred --CCeEeecCCH-----HHHHHHHHHhCCceec-----ccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEE
Q 000317 416 --GMTLVFDMKL-----HRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFI 482 (1676)
Q Consensus 416 --gItvv~nVK~-----~~LeRIAR~TGA~Ivs-----Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ff 482 (1676)
||++|++++. .+|+|||++|||.+++ +++ ++...||+|+.|++.+ +++++|
T Consensus 268 ~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i 331 (524)
T TIGR02348 268 TLNVCAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDK----------------DNTTIV 331 (524)
T ss_pred ccceEEEECCCccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEee----------------cEEEEE
Confidence 8999988854 7999999999999999 888 8888999999999865 478999
Q ss_pred EcCCCCc-----------------------------------eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEe
Q 000317 483 EGCPTRL-----------------------------------GCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFL 527 (1676)
Q Consensus 483 eGc~~~~-----------------------------------gcTILLRG~s~~~L~evKrvl~dav~vv~~l~lE~s~l 527 (1676)
+||..+. .+||+|||+|..+++|+||.++||++++++++.+. ||
T Consensus 332 ~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g-~V 410 (524)
T TIGR02348 332 EGAGDKAAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEG-IV 410 (524)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-Cc
Confidence 9987654 68999999999999999999999999999999995 99
Q ss_pred ecCCccccc
Q 000317 528 VDQRAMFST 536 (1676)
Q Consensus 528 ~ggGa~~~~ 536 (1676)
+||||++..
T Consensus 411 pGGGa~e~~ 419 (524)
T TIGR02348 411 PGGGVALLR 419 (524)
T ss_pred cCCcHHHHH
Confidence 999999875
No 45
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=99.89 E-value=3.8e-22 Score=251.06 Aligned_cols=221 Identities=14% Similarity=0.233 Sum_probs=188.2
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCCC
Q 000317 268 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 347 (1676)
Q Consensus 268 ~qLL~~~~~sl~sK~~~~W~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GGs~~DS~vI~GVV~~Knvahk~M 347 (1676)
.+|++.+.+++.+ .+.|++|+++|+..+.++ + .+|++ . .+..| .++++++|++|++.+.|..|
T Consensus 142 ~~l~~va~~s~~~------~~~l~~lv~eAv~~vg~~---g-~i~v~-~---~~~~g---~~~~~v~G~~~~~g~~~p~~ 204 (544)
T PRK12850 142 KEIAQVATISANG------DESIGEMIAEAMDKVGKE---G-VITVE-E---AKTLG---TELDVVEGMQFDRGYLSPYF 204 (544)
T ss_pred HHHHHHHHHhcCC------HHHHHHHHHHHHHHhccc---C-ceeeE-E---ccccC---cceEEEEeEEecCccCcCcc
Confidence 4567777775433 578999999999999653 2 34443 2 22344 68999999999999998765
Q ss_pred -------CccccCCcEEEEeeeccccccccccHHHHHHHHHHHHHHHhhHhcCCCeEEEecccccHHHHHHHHHcCC---
Q 000317 348 -------PTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGM--- 417 (1676)
Q Consensus 348 -------~~~i~nPRILLL~~~LEy~r~el~Sle~i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L~~~gI--- 417 (1676)
++.++||+||++++.|. ++ +.+..++++|.+.+++|||++++|++.|+++|.++||
T Consensus 205 ~~~~~~~~~~~~n~~Ill~d~~i~-------~~-------~~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~ 270 (544)
T PRK12850 205 VTNPEKMRAELEDPYILLHEKKIS-------NL-------QDLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGG 270 (544)
T ss_pred ccccccCeEEEeCCEEEEEecccC-------CH-------HHHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCccc
Confidence 88999999999999643 21 2277889999999999999999999999999999999
Q ss_pred ---eEeec-----CCHHHHHHHHHHhCCceec-----ccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEE
Q 000317 418 ---TLVFD-----MKLHRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIE 483 (1676)
Q Consensus 418 ---tvv~n-----VK~~~LeRIAR~TGA~Ivs-----Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffe 483 (1676)
.+|++ +++.+|+|||++|||.+++ +++ ++...||+|+.|++.+ +++++|+
T Consensus 271 ~~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~ 334 (544)
T PRK12850 271 LKSVAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITK----------------ENTTIID 334 (544)
T ss_pred ceEEEEeCCCcCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEe----------------eeEEEEe
Confidence 89887 9999999999999999999 677 7888899999998775 4789999
Q ss_pred cCCCCc-----------------------------------eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEee
Q 000317 484 GCPTRL-----------------------------------GCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLV 528 (1676)
Q Consensus 484 Gc~~~~-----------------------------------gcTILLRG~s~~~L~evKrvl~dav~vv~~l~lE~s~l~ 528 (1676)
||..+. .|||+|||+|+.+++|+||.++||++++++++.+ .||+
T Consensus 335 g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~-g~Vp 413 (544)
T PRK12850 335 GAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEE-GIVP 413 (544)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhc-CCcc
Confidence 998753 7999999999999999999999999999999998 5999
Q ss_pred cCCccccc
Q 000317 529 DQRAMFST 536 (1676)
Q Consensus 529 ggGa~~~~ 536 (1676)
||||++..
T Consensus 414 GGGa~e~~ 421 (544)
T PRK12850 414 GGGVALLR 421 (544)
T ss_pred CCcHHHHH
Confidence 99999875
No 46
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=99.88 E-value=2.1e-21 Score=244.70 Aligned_cols=220 Identities=16% Similarity=0.204 Sum_probs=187.4
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCCccCcccCeeEEEccCCCC-CCceeEEeEEEeeccCCCC
Q 000317 268 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSR-NQSQIIKGLVFKKHAAHKH 346 (1676)
Q Consensus 268 ~qLL~~~~~sl~sK~~~~W~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GGs~-~DS~vI~GVV~~Knvahk~ 346 (1676)
.+|++.+.+++.+ .+.|++|+++|+..|.++ + .|.|.. ||.. .++.+++|++|++...+..
T Consensus 142 ~~l~~va~~s~~~------~~~l~~li~eA~~~vg~~---g-------~i~v~~--g~~~~~~~~~v~G~~~~~g~~~p~ 203 (545)
T PRK12852 142 AEIAQVGTISANG------DAAIGKMIAQAMQKVGNE---G-------VITVEE--NKSLETEVDIVEGMKFDRGYLSPY 203 (545)
T ss_pred HHHHHHHhhhcCC------hHHHHHHHHHHHHHhccC---C-------ceeeec--CCCcceEEEEEEeEEecCCccCCc
Confidence 4466666665433 478999999999999753 2 233432 7776 7999999999999998874
Q ss_pred -------CCccccCCcEEEEeeeccccccccccHHHHHHHHHHHHHHHhhHhcCCCeEEEecccccHHHHHHHHHc----
Q 000317 347 -------MPTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEK---- 415 (1676)
Q Consensus 347 -------M~~~i~nPRILLL~~~LEy~r~el~Sle~i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L~~~---- 415 (1676)
|+..++||+|||+++.|.- . +++..+++.|.+.+++|||+.++|++.|+++|..+
T Consensus 204 ~v~~~~~~~~~l~n~~Ili~d~~i~~-------~-------~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~ 269 (545)
T PRK12852 204 FVTNAEKMTVELDDAYILLHEKKLSG-------L-------QAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRG 269 (545)
T ss_pred cccccccceEEecCceEEEecCccCC-------H-------HHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccc
Confidence 9999999999999875432 1 36777899999999999999999999999999876
Q ss_pred --CCeEeecCC-----HHHHHHHHHHhCCceec-----ccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEE
Q 000317 416 --GMTLVFDMK-----LHRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFI 482 (1676)
Q Consensus 416 --gItvv~nVK-----~~~LeRIAR~TGA~Ivs-----Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ff 482 (1676)
||++|++.+ +.+|+|||++|||.+++ +++ ++...||+|+.|++.+ +.+++|
T Consensus 270 ~~~i~av~~~~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~----------------~~~~~i 333 (545)
T PRK12852 270 GLKVAAVKAPGFGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDK----------------ENTTIV 333 (545)
T ss_pred cceEEEEecCCcccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEc----------------cEEEEE
Confidence 799999665 99999999999999999 677 8888899999998876 367889
Q ss_pred EcCCCC-----------------------------------ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEe
Q 000317 483 EGCPTR-----------------------------------LGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFL 527 (1676)
Q Consensus 483 eGc~~~-----------------------------------~gcTILLRG~s~~~L~evKrvl~dav~vv~~l~lE~s~l 527 (1676)
+||..+ ..|||+|||+|+.+++|+||.++||++++++++.+. ||
T Consensus 334 ~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g-~V 412 (545)
T PRK12852 334 NGAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEG-IV 412 (545)
T ss_pred eCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CC
Confidence 998763 679999999999999999999999999999999995 99
Q ss_pred ecCCccccc
Q 000317 528 VDQRAMFST 536 (1676)
Q Consensus 528 ~ggGa~~~~ 536 (1676)
+||||++..
T Consensus 413 pGGGa~e~~ 421 (545)
T PRK12852 413 PGGGVALLR 421 (545)
T ss_pred cCchHHHHH
Confidence 999999875
No 47
>CHL00093 groEL chaperonin GroEL
Probab=99.86 E-value=7e-21 Score=239.30 Aligned_cols=222 Identities=15% Similarity=0.208 Sum_probs=181.6
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCCccCcccCeeEEEccCCCCCCceeEEeEEEeeccCCCCC
Q 000317 268 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 347 (1676)
Q Consensus 268 ~qLL~~~~~sl~sK~~~~W~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GGs~~DS~vI~GVV~~Knvahk~M 347 (1676)
.+|++.+.+++ .+.+.|++|+++|+..|.++ | .+|+ + -.+|...++++++|++|++...|..|
T Consensus 141 ~~L~~VA~ts~------~~~~~l~~lv~eAv~~vg~~---g-~i~~------~-~g~~~~~~~~~v~G~~~~~g~~~p~f 203 (529)
T CHL00093 141 QAITQVASISA------GNDEEVGSMIADAIEKVGRE---G-VISL------E-EGKSTVTELEITEGMRFEKGFISPYF 203 (529)
T ss_pred HHHHHHHHHhc------cChHHHHHHHHHHHHHhccC---C-ceee------c-CCCccceeeEEEeeEEecCccCcCcc
Confidence 34666666643 37889999999999999752 2 2333 1 12345677899999999999988765
Q ss_pred ---Cc----cccCCcEEEEeeeccccccccccHHHHHHHHHHHHHHHhhHhcCCCeEEEecccccHHHHHHH--HH----
Q 000317 348 ---PT----EYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESI--LE---- 414 (1676)
Q Consensus 348 ---~~----~i~nPRILLL~~~LEy~r~el~Sle~i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L--~~---- 414 (1676)
++ .++||+||+++++|++. +..+..++++|...+.++|+++++|++.|+.+| .+
T Consensus 204 v~~~k~~~~~l~n~~Ili~d~~le~~-------------~~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~ 270 (529)
T CHL00093 204 VTDTERMEVVQENPYILLTDKKITLV-------------QQDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGI 270 (529)
T ss_pred ccCCccceEEecCceehhhcCCCCch-------------HHHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhccc
Confidence 44 59999999999999985 234778889999999999999999999555544 77
Q ss_pred cCCeEeecC-----CHHHHHHHHHHhCCceec-----ccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEE
Q 000317 415 KGMTLVFDM-----KLHRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIE 483 (1676)
Q Consensus 415 ~gItvv~nV-----K~~~LeRIAR~TGA~Ivs-----Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ffe 483 (1676)
.||.+|+++ ++.+|+|||++|||.+++ +++ ++..+||+|+.+++.+ +++++|+
T Consensus 271 ~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~~~ 334 (529)
T CHL00093 271 VNVVAVRAPGFGDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTK----------------DSTTIIA 334 (529)
T ss_pred ceEEEEecCCCCcchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEec----------------CEEEEEe
Confidence 599999998 458899999999999999 687 8888899999999875 3677777
Q ss_pred c---------CCCC-------------------------ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeec
Q 000317 484 G---------CPTR-------------------------LGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVD 529 (1676)
Q Consensus 484 G---------c~~~-------------------------~gcTILLRG~s~~~L~evKrvl~dav~vv~~l~lE~s~l~g 529 (1676)
+ |... ..|||+|||+|+.+++|.||.++||++++++++.+. +|+|
T Consensus 335 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~g-vVpG 413 (529)
T CHL00093 335 DGNEEQVKARCEQLRKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEG-IVPG 413 (529)
T ss_pred cCcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC-cccC
Confidence 5 3321 378899999999999999999999999999999985 9999
Q ss_pred CCccccc
Q 000317 530 QRAMFST 536 (1676)
Q Consensus 530 gGa~~~~ 536 (1676)
||+++..
T Consensus 414 GGa~e~~ 420 (529)
T CHL00093 414 GGATLVH 420 (529)
T ss_pred CcHHHHH
Confidence 9999875
No 48
>PRK14104 chaperonin GroEL; Provisional
Probab=99.85 E-value=2.9e-20 Score=233.99 Aligned_cols=220 Identities=16% Similarity=0.199 Sum_probs=184.3
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCCccCcccCeeEEEccCCCC-CCceeEEeEEEeeccCCCC
Q 000317 268 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSR-NQSQIIKGLVFKKHAAHKH 346 (1676)
Q Consensus 268 ~qLL~~~~~sl~sK~~~~W~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GGs~-~DS~vI~GVV~~Knvahk~ 346 (1676)
++|++.+.++..++ +.|++|+++|+..|.++ | .|.|..+ +.. .++.+++|++|++.+.|+.
T Consensus 142 ~~l~~va~~s~~~d------~~i~~lv~~Av~~vg~~---g-------~i~v~~~--~~~~~~~~~~~G~~~~~g~~~p~ 203 (546)
T PRK14104 142 DEIAQVGTISANGD------AEIGKFLADAMKKVGNE---G-------VITVEEA--KSLETELDVVEGMQFDRGYISPY 203 (546)
T ss_pred HHHHHHHHHHhcCc------hHHHHHHHHHHHHhccC---C-------ceeeEec--ccccceEEEEEEEEEeCCCCCcc
Confidence 44667677754433 66999999999998652 1 3445543 445 5899999999999999885
Q ss_pred C-------CccccCCcEEEEeeeccccccccccHHHHHHHHHHHHHHHhhHhcCCCeEEEecccccHHHHHHHHH-----
Q 000317 347 M-------PTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILE----- 414 (1676)
Q Consensus 347 M-------~~~i~nPRILLL~~~LEy~r~el~Sle~i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L~~----- 414 (1676)
| +..++||+|++.+.. +.++ +.+..+++.|...+.+|||++++|++.|+++|..
T Consensus 204 ~~~~~~~~~~~~~~~~Ilv~d~~-------i~~~-------~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~ 269 (546)
T PRK14104 204 FVTNADKMRVEMDDAYILINEKK-------LSSL-------NELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRG 269 (546)
T ss_pred hhcCcccCceeeeCcEEEEehhh-------hcCH-------HHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccc
Confidence 5 778999999999833 3333 2366889999999999999999999999999984
Q ss_pred -cCCeEeecCC-----HHHHHHHHHHhCCceecc-----cc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEE
Q 000317 415 -KGMTLVFDMK-----LHRLERVARCTGSPILSS-----GS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFI 482 (1676)
Q Consensus 415 -~gItvv~nVK-----~~~LeRIAR~TGA~IvsS-----id-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~~~Ktl~ff 482 (1676)
.||.+|++++ +.+|+|||++|||.++++ ++ ++...||+|+.+++.. +.+++|
T Consensus 270 ~~~i~av~~~~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~~~----------------~~~~~i 333 (546)
T PRK14104 270 GLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMIDK----------------ENTTIV 333 (546)
T ss_pred eeeEEEEeccCCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEEcC----------------CEEEEE
Confidence 6899998777 899999999999999999 77 8888899999988521 578889
Q ss_pred EcCCCC-----------------------------------ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEe
Q 000317 483 EGCPTR-----------------------------------LGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFL 527 (1676)
Q Consensus 483 eGc~~~-----------------------------------~gcTILLRG~s~~~L~evKrvl~dav~vv~~l~lE~s~l 527 (1676)
+||..+ ..|||+|||+|+.+++|+||.++||++++++++.+. |+
T Consensus 334 ~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g-~V 412 (546)
T PRK14104 334 NGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEG-IV 412 (546)
T ss_pred eCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cC
Confidence 999875 789999999999999999999999999999999996 99
Q ss_pred ecCCccccc
Q 000317 528 VDQRAMFST 536 (1676)
Q Consensus 528 ~ggGa~~~~ 536 (1676)
+|||+++..
T Consensus 413 pGGGa~e~~ 421 (546)
T PRK14104 413 PGGGVALLR 421 (546)
T ss_pred cCchHHHHH
Confidence 999999875
No 49
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=99.84 E-value=2.1e-20 Score=236.73 Aligned_cols=230 Identities=17% Similarity=0.196 Sum_probs=186.5
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCCccCcccCeeEEEccCCCCCCc-eeEEeEEEeeccCCC-
Q 000317 268 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQS-QIIKGLVFKKHAAHK- 345 (1676)
Q Consensus 268 ~qLL~~~~~sl~sK~~~~W~~~ls~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GGs~~DS-~vI~GVV~~Knvahk- 345 (1676)
.+|++.+.+++. +.+.|++|+++|+..|.++ | .+++ ..||+..|+ ++++|++|++...|+
T Consensus 196 ~~L~~vA~tS~~------~~~~i~~liaeAv~~Vg~~---g-~i~v--------~~g~s~~dsl~~v~G~~~d~g~~spy 257 (600)
T PLN03167 196 SELADVAAVSAG------NNYEVGNMIAEAMSKVGRK---G-VVTL--------EEGKSAENNLYVVEGMQFDRGYISPY 257 (600)
T ss_pred HHHHHHHHHhcc------CcHHHHHHHHHHHHHhccC---C-cEEe--------ccCCCccceeEEEEEEEecCCccCcc
Confidence 457777777543 4458999999999999652 2 2222 269999998 899999999999988
Q ss_pred ------CCCccccCCcEEEEeeeccccccccccHHHHHHHHHHHHHHHhhHhcCCCeEEEecccccHHHHHHHH------
Q 000317 346 ------HMPTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESIL------ 413 (1676)
Q Consensus 346 ------~M~~~i~nPRILLL~~~LEy~r~el~Sle~i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L~------ 413 (1676)
+|+..++||+|||+++.|.. .+ .+..++++|...++++|++.++|++.|+++|.
T Consensus 258 fvt~~~~m~~~l~np~Ill~d~~i~~-------~~-------~l~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g 323 (600)
T PLN03167 258 FVTDSEKMSVEYDNCKLLLVDKKITN-------AR-------DLIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRG 323 (600)
T ss_pred cccCcCCCeEEEeCCEEEEEccccCC-------HH-------HHHHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccc
Confidence 89999999999999985432 21 22234457788999999999999999999999
Q ss_pred HcCCeEeecCC-----HHHHHHHHHHhCCceec-----ccc-CCCCCccccceEEEEE-----eecccccccCCC-CCCC
Q 000317 414 EKGMTLVFDMK-----LHRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKK-----FVEEHAGFREGG-KRPS 476 (1676)
Q Consensus 414 ~~gItvv~nVK-----~~~LeRIAR~TGA~Ivs-----Sid-L~~~~LG~C~~f~v~~-----~~~~~~~~~~~~-~~~~ 476 (1676)
..+|.+|+.++ ...|+|||.+|||.+++ +++ +....||+|+.|++.+ ++.+ +. ....
T Consensus 324 ~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~------~~~~~i~ 397 (600)
T PLN03167 324 SLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDG------STQEAVN 397 (600)
T ss_pred cceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCC------ccHHHHH
Confidence 88999999985 88999999999999999 677 8888899999999987 3321 00 0122
Q ss_pred ceEEEEEcCC------------C------CceEEEE-EeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000317 477 KTLMFIEGCP------------T------RLGCTVL-LKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 536 (1676)
Q Consensus 477 Ktl~ffeGc~------------~------~~gcTIL-LRG~s~~~L~evKrvl~dav~vv~~l~lE~s~l~ggGa~~~~ 536 (1676)
+.+.+|++|. . ..++||| |||+|..+|+|+||.++||++++++++.+. +|+|||+++..
T Consensus 398 ~r~~~i~~~~~~~~~~~~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~g-vVpGGGa~el~ 475 (600)
T PLN03167 398 KRVAQIKNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLR 475 (600)
T ss_pred HHHHHHHhhhhccCCHHHHHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHH
Confidence 5777888775 1 1267887 999999999999999999999999999999 99999999875
No 50
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=7e-20 Score=207.17 Aligned_cols=143 Identities=18% Similarity=0.240 Sum_probs=138.2
Q ss_pred HHHHHhhHhcCCCeEEEecccccHHHHHHHHHcCCeEeecCCHHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEe
Q 000317 383 LKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKF 461 (1676)
Q Consensus 383 L~~lV~rI~~~~pnVVLveksVs~~Al~~L~~~gItvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~ 461 (1676)
+..++++|...|+++++|+++.++.|.++|.+++..+|++|..++||-||-+||++|++.+. |++.+||+|+.++...|
T Consensus 144 f~emi~~vK~~ga~l~icqwgfddeanhll~~n~lpavrwVGGpEiEliAiaT~grIVprF~eL~~~kLG~aglVrE~sf 223 (400)
T KOG0357|consen 144 FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVREISF 223 (400)
T ss_pred HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCCCceeecCCcceEEEEeecCCeeeccHhhhCHhhccccceEEEEec
Confidence 78889999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred ecccccccCCCCCCCceEEEEEcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000317 462 VEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 536 (1676)
Q Consensus 462 ~~~~~~~~~~~~~~~Ktl~ffeGc~~~~gcTILLRG~s~~~L~evKrvl~dav~vv~~l~lE~s~l~ggGa~~~~ 536 (1676)
+.. ..+++++|.|++++.+||.+||+|..+++|+||++|||+||++||+++.++++|||+.+..
T Consensus 224 gtt-----------kdkmlviEqc~nskaVTifvRg~Nkmii~EakrslhdalCvirnlird~rivYgGGaaEis 287 (400)
T KOG0357|consen 224 GTT-----------KDKMLVIEQCKNSKAVTIFVRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIS 287 (400)
T ss_pred ccc-----------cceEEEEEecCCCceEEEEEecCcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhh
Confidence 753 4799999999999999999999999999999999999999999999999999999998874
No 51
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=95.58 E-value=0.01 Score=80.30 Aligned_cols=100 Identities=9% Similarity=-0.229 Sum_probs=81.2
Q ss_pred CCCCCCCChhcccceeeecCcEEEEEEEecCccccCCCCCCCcEEEeecCCCCCCCCCCCCCCceEEcccccccccHHHH
Q 000317 778 QCASCSELPEAHFYYYARHNKQLTIRVKRLPDRIRLSGEAEGKLWMWSRCGRCKTANGVPKSTKRVVISTAACGLSFGKF 857 (1676)
Q Consensus 778 ~C~sC~~pm~~H~r~YvH~~g~ltI~Ve~l~~~~~lpge~~~~I~MWs~Ck~C~~~~g~~~sTp~v~MSd~tW~~SFGKf 857 (1676)
.|..|+.||..|++.|+|..- ...-+...+. ++++ ...|.||++|..|+. .+-+ +|...+|++.+|++
T Consensus 658 ~~~~~~~~~~~~lv~~~es~~--~~~~~s~~~~--~~~l-~e~~~~~~~~~~~k~------~~~~-~~~~~~~~~~~~~~ 725 (1598)
T KOG0230|consen 658 LSSYSKGPKQNGLVPAHESVL--NDLHESTLSI--LSKL-PETRSGTHEGNEDKG------PGLE-PELANNQNIQRPEE 725 (1598)
T ss_pred hhhhcCchhhccccccccccc--cccccccccc--cccc-cchhcccchhccccC------cccc-ccccccccccchhh
Confidence 345689999999999999988 3333333333 5665 358999999999999 5888 99999999999999
Q ss_pred HhhhcCCCCCCCCCCCCCCCccccceeecccCCeE
Q 000317 858 LELSFSHHSSSTRLSSCGHSLHRDFLYFFGLGPMV 892 (1676)
Q Consensus 858 LEL~F~~~~~~~r~~~C~H~l~rDhlryFg~~~~V 892 (1676)
+|-. ....+.+...|.|.+---|.|+| +.++|
T Consensus 726 ~e~~--~s~~~~~~~~HQsilVl~ss~~~-~k~~~ 757 (1598)
T KOG0230|consen 726 TEEQ--SSKDALDPSSHQSILVLFSSRSV-LKGSV 757 (1598)
T ss_pred hhhh--hcccCCCccccceeEEEEeeeee-ccCCc
Confidence 9998 44456677889999999999999 88886
No 52
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=93.90 E-value=0.57 Score=58.94 Aligned_cols=217 Identities=15% Similarity=0.151 Sum_probs=128.8
Q ss_pred HHHHHHHhhcCCCCCCCCccCcccCeeEEEccCCCCCCc-eeEEeEEEeeccCC-------CCCCccccCCcEEEEeeec
Q 000317 292 SLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQS-QIIKGLVFKKHAAH-------KHMPTEYKNPRLLLIRGVL 363 (1676)
Q Consensus 292 ~L~~eAv~~V~pd~~~g~~mDi~~yVKIKKI~GGs~~DS-~vI~GVV~~Knvah-------k~M~~~i~nPRILLL~~~L 363 (1676)
.+.-+|+..|.++ ..|.|+ -|.+..|. +++.|+=|.+.... +.+...++||.+||..--
T Consensus 173 ~li~~a~~kvG~~----------GVItv~--~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kk- 239 (550)
T KOG0356|consen 173 NLISDAMKKVGRK----------GVITVK--DGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKK- 239 (550)
T ss_pred HHHHHHHHHhCcC----------CeEEee--cCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhhh-
Confidence 3667778887653 123333 25555543 67888888876553 234445666666554322
Q ss_pred cccccccccHHHHHHHHHHHHHHHhhHhcCCCeEEEecccccHHHHHHHHHcCCeEe-----------ecCCHHHHHHHH
Q 000317 364 GLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLV-----------FDMKLHRLERVA 432 (1676)
Q Consensus 364 Ey~r~el~Sle~i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L~~~gItvv-----------~nVK~~~LeRIA 432 (1676)
+.+=++.+.-+-......+|=||+. ..|+..|+..|.=.+--+. .+-+...|..||
T Consensus 240 ------------i~~v~~ivp~LE~A~~~~~PLliIA-eDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Dia 306 (550)
T KOG0356|consen 240 ------------ISSVQSIVPALELALAKRRPLLIIA-EDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDIA 306 (550)
T ss_pred ------------hhHHHHHhHHHHHhhhccCceEEEe-hhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHHH
Confidence 2222233333333444556766655 5688888877654432222 334667899999
Q ss_pred HHhCCceecc------cc-CCCCCccccceEEEEEeecccccccCCCCC-------CCc------eEEEEEc-CC-----
Q 000317 433 RCTGSPILSS------GS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKR-------PSK------TLMFIEG-CP----- 486 (1676)
Q Consensus 433 R~TGA~IvsS------id-L~~~~LG~C~~f~v~~~~~~~~~~~~~~~~-------~~K------tl~ffeG-c~----- 486 (1676)
-+|||.++.. ++ ....+||+|..+.+-+-.. ....+-+.+. .-+ +..+-.. ..
T Consensus 307 i~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtkd~t-~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ 385 (550)
T KOG0356|consen 307 ILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTKDDT-MLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAK 385 (550)
T ss_pred HHhhhhhhccchhhcccccCchhhcCcceeEEEecCcc-eeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHH
Confidence 9999998842 23 4668899999988875211 0000000000 000 0001110 00
Q ss_pred -CCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000317 487 -TRLGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 536 (1676)
Q Consensus 487 -~~~gcTILLRG~s~~~L~evKrvl~dav~vv~~l~lE~s~l~ggGa~~~~ 536 (1676)
....++|-+-|.++-++++-|-.+.||+.+.++.. |..+++|||+.+-.
T Consensus 386 ls~gvavi~vGg~se~Ev~ekk~rv~dalnat~aav-eeGivpGGG~all~ 435 (550)
T KOG0356|consen 386 LSGGVAVIKVGGHSEVEVNEKKDRVEDALNATRAAV-EEGIVPGGGTALLR 435 (550)
T ss_pred hcCCeEEEEecCcchhhhhhhhhhHHHHHHHHHHHh-hcCcccCCchHHHH
Confidence 01246677779999999999999999999888876 78899999998753
No 53
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=46.49 E-value=46 Score=32.46 Aligned_cols=48 Identities=8% Similarity=0.094 Sum_probs=37.5
Q ss_pred HHhhHhcCCCeEEEecccccHHHHHHHHHcCCeEeecCCHHHHHHHHHH
Q 000317 386 VMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARC 434 (1676)
Q Consensus 386 lV~rI~~~~pnVVLveksVs~~Al~~L~~~gItvv~nVK~~~LeRIAR~ 434 (1676)
+++.|...++++|+|.+ |..-+...|.++||.++.....+.-+-|.+.
T Consensus 45 ~~~~l~~~~v~~li~~~-iG~~~~~~L~~~gI~v~~~~~~~i~~~l~~~ 92 (94)
T PF02579_consen 45 IAKFLAEEGVDVLICGG-IGEGAFRALKEAGIKVYQGAGGDIEEALEAY 92 (94)
T ss_dssp HHHHHHHTTESEEEESC-SCHHHHHHHHHTTSEEEESTSSBHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEeC-CCHHHHHHHHHCCCEEEEcCCCCHHHHHHHH
Confidence 44556678999999865 8999999999999999998666555555443
No 54
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=46.48 E-value=43 Score=36.83 Aligned_cols=51 Identities=22% Similarity=0.474 Sum_probs=35.8
Q ss_pred HhhHhcCCCeEEEecccccHHHHHHHHHcCCeE-eecCC--H----HHHHHHHHHhCC
Q 000317 387 MDMIDMCHPNVVLVEKTVSRDIQESILEKGMTL-VFDMK--L----HRLERVARCTGS 437 (1676)
Q Consensus 387 V~rI~~~~pnVVLveksVs~~Al~~L~~~gItv-v~nVK--~----~~LeRIAR~TGA 437 (1676)
+++|++++|||||....-..-..+.|.+.||.+ +.... . ..++.+++.+|-
T Consensus 53 ~E~l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~lg~~~g~ 110 (195)
T cd01143 53 VEKIVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGKITGA 110 (195)
T ss_pred HHHHhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 457899999999986655554667799999954 44332 2 346677777775
No 55
>PLN02667 inositol polyphosphate multikinase
Probab=44.79 E-value=36 Score=41.06 Aligned_cols=70 Identities=19% Similarity=0.197 Sum_probs=45.3
Q ss_pred ecCCcEEEEecC-----HHHHHHHHHHHHH--HHHHHhhhcCCCCCcchheeeeeEEEeeccCCCCcceeEEEEEEeecc
Q 000317 1435 TLDDRFIIKEIK-----KTEFDSFDKFALH--YFKYMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLT 1507 (1676)
Q Consensus 1435 T~D~rFIiKtis-----~~E~~~fl~~lp~--Yf~y~~~~~~~~~~TlL~Ki~Gly~i~~k~~~~g~~~k~~~iVMeNlf 1507 (1676)
+.|+..|+|-+. ..|+++...+... .-.. ..-++++++|...+... .|+ .+||||||.
T Consensus 23 ~~~~g~~~Kp~~~~~rg~rE~~FY~~~~~~~~~~~~--------L~~~~P~y~G~~~~~~~---~~~----~~i~LeDLt 87 (286)
T PLN02667 23 VDDSGRFYKPLQDDSRGEREAAFYESFSSDTRVPDH--------IRRFFPVFHGTQLVEAS---DGS----GLLVLEDLL 87 (286)
T ss_pred EcCCCcEEeccCCcccchHHHHHHHHHhccccchHH--------HHhhCcccceeEeeccC---CCc----eeEEehHHh
Confidence 347778899997 7898877665411 0011 23578999999887432 233 379999999
Q ss_pred CCCccceeeecc
Q 000317 1508 FERNITRQYDLK 1519 (1676)
Q Consensus 1508 ~~~~i~~~yDLK 1519 (1676)
++..--.+=|||
T Consensus 88 ~g~~~PcVlDlK 99 (286)
T PLN02667 88 AGYTKPCVMDVK 99 (286)
T ss_pred cCCCCCeEEEEE
Confidence 885433344554
No 56
>PF06296 DUF1044: Protein of unknown function (DUF1044); InterPro: IPR009387 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=44.27 E-value=67 Score=33.99 Aligned_cols=77 Identities=19% Similarity=0.316 Sum_probs=56.2
Q ss_pred EEeCHHHHHHHHHhcCCChHHHHHHhccc-------------C--cCC-CCCCCcce----eEEEecCCcEEE-------
Q 000317 1390 KCLYANQFRDLRSRCCPSELAYIDSLSRC-------------R--NWD-AKGGKSKS----FFVKTLDDRFII------- 1442 (1676)
Q Consensus 1390 ~~y~p~~F~~LR~~~gi~e~~yi~SLs~~-------------~--~~~-~sgGKSGs----~F~~T~D~rFIi------- 1442 (1676)
++|-...|..+-+..++++.++...+... . +|. ...||||. .||+..+.-|.|
T Consensus 2 rifkt~~F~r~akk~~~sd~~L~~ai~el~~G~~~adLGGgv~K~Ria~~g~GKsGG~R~I~~~~~~~~~~~l~~y~K~~ 81 (120)
T PF06296_consen 2 RIFKTKWFKRWAKKEGLSDDDLCEAIEELEQGLIDADLGGGVRKKRIARKGKGKSGGYRVIYFFKQEDRIFFLYIYAKNE 81 (120)
T ss_pred ceeecHHHHHHHHHcCCCHHHHHHHHHHHHhCCcccchhccEEEEEeccCCCCCCCceEEEEEEEeCCEEEEEEEEcccc
Confidence 56778999999999999998887655431 1 232 35699995 455655555554
Q ss_pred -EecCHHHHHHHHHHHHHHHHHHhh
Q 000317 1443 -KEIKKTEFDSFDKFALHYFKYMNE 1466 (1676)
Q Consensus 1443 -Ktis~~E~~~fl~~lp~Yf~y~~~ 1466 (1676)
-.||..|++.|.+++..|+.+-.+
T Consensus 82 ~~nis~~El~~lk~la~~l~~~~~~ 106 (120)
T PF06296_consen 82 KANISDKELKALKKLAKELLNLSEE 106 (120)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCHH
Confidence 246899999999999999988765
No 57
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=40.47 E-value=42 Score=39.91 Aligned_cols=52 Identities=21% Similarity=0.332 Sum_probs=40.2
Q ss_pred HhhHhcCCCeEEEecccccHHHHHHHHHcCCeEeec-C-C----HHHHHHHHHHhCCc
Q 000317 387 MDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFD-M-K----LHRLERVARCTGSP 438 (1676)
Q Consensus 387 V~rI~~~~pnVVLveksVs~~Al~~L~~~gItvv~n-V-K----~~~LeRIAR~TGA~ 438 (1676)
+++|++++||+||+....+....+.|.+.||.|+.- . . ...++.+++.+|..
T Consensus 84 ~E~I~al~PDlIi~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~i~~lg~~~G~~ 141 (289)
T TIGR03659 84 MEKIKSLKPTVVLSVTTLEEDLGPKFKQLGVEATFLNLTSVDGMKKSITELGEKYGRE 141 (289)
T ss_pred HHHHhccCCcEEEEcCcccHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHHHHHhCCH
Confidence 567999999999998888777788899999987642 2 1 23478888888865
No 58
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=39.93 E-value=52 Score=32.65 Aligned_cols=40 Identities=10% Similarity=0.156 Sum_probs=34.2
Q ss_pred HHHHhhHhcCCCeEEEecccccHHHHHHHHHcCCeEeecCC
Q 000317 384 KSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMK 424 (1676)
Q Consensus 384 ~~lV~rI~~~~pnVVLveksVs~~Al~~L~~~gItvv~nVK 424 (1676)
..+++.|...++++|+|. ++..-+++.|.++||.++.-..
T Consensus 53 ~~~~~~l~~~~v~~vi~~-~iG~~~~~~l~~~gI~v~~~~~ 92 (103)
T cd00851 53 GKAAEFLADEGVDVVIVG-GIGPRALNKLRNAGIKVYKGAE 92 (103)
T ss_pred hHHHHHHHHcCCCEEEeC-CCCcCHHHHHHHCCCEEEEcCC
Confidence 346666777999999995 6999999999999999998776
No 59
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=39.66 E-value=57 Score=37.40 Aligned_cols=52 Identities=13% Similarity=0.343 Sum_probs=38.3
Q ss_pred HhhHhcCCCeEEEecccccHH-HHHHHHHcCCeEeecC--C----HHHHHHHHHHhCCc
Q 000317 387 MDMIDMCHPNVVLVEKTVSRD-IQESILEKGMTLVFDM--K----LHRLERVARCTGSP 438 (1676)
Q Consensus 387 V~rI~~~~pnVVLveksVs~~-Al~~L~~~gItvv~nV--K----~~~LeRIAR~TGA~ 438 (1676)
+++|++++|||||+...-..- ..+.|.+.||.++..- . ...++.|++.+|..
T Consensus 50 ~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~lg~~~g~~ 108 (245)
T cd01144 50 LERVLALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVSEPQTLDDILADIRRLGTLAGRP 108 (245)
T ss_pred HHHHHhCCCCEEEEecCCCHHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhCCh
Confidence 467899999999997554443 4788999999876532 2 33478888888875
No 60
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=38.77 E-value=54 Score=40.59 Aligned_cols=52 Identities=21% Similarity=0.341 Sum_probs=38.1
Q ss_pred HhhHhcCCCeEEEecccccHHHHHHHHHcCCeEeecCC---H----HHHHHHHHHhCCc
Q 000317 387 MDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMK---L----HRLERVARCTGSP 438 (1676)
Q Consensus 387 V~rI~~~~pnVVLveksVs~~Al~~L~~~gItvv~nVK---~----~~LeRIAR~TGA~ 438 (1676)
+++|++++|||||+...-.....+.|.+.||.|+.--. . ..++.|++.+|-.
T Consensus 112 ~E~Il~l~PDLVi~~~~~~~~~~~~L~~~gi~V~~~~~~~~l~~i~~~i~~lG~i~G~e 170 (359)
T PRK09534 112 VEAVVGLDPDLVLAPNAVAGDTVTRLREAGITVFHFPAATSIEDVAEKTATIGRLTGNC 170 (359)
T ss_pred HHHHhcCCCCEEEEcCCCchHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHHHHHhCCH
Confidence 67899999999999755555567889999999865422 1 3456777777653
No 61
>cd01138 FeuA Periplasmic binding protein FeuA. These proteins have predicted to function as initial receptors in ABC transport of metal ions in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=33.82 E-value=71 Score=36.79 Aligned_cols=51 Identities=10% Similarity=0.196 Sum_probs=36.8
Q ss_pred HhhHhcCCCeEEEecccccHHHHHHHHHcCCeEeecCC----HHHHHHHHHHhCCc
Q 000317 387 MDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMK----LHRLERVARCTGSP 438 (1676)
Q Consensus 387 V~rI~~~~pnVVLveksVs~~Al~~L~~~gItvv~nVK----~~~LeRIAR~TGA~ 438 (1676)
+++|++++||+||+...... ..+.|.+.|.+++.... ...+++|++.+|..
T Consensus 59 ~E~i~~l~PDlVi~~~~~~~-~~~~l~~~~p~~~~~~~~~~~~~~i~~lg~~~g~~ 113 (248)
T cd01138 59 LEKVLELKPDLIIVSSKQEE-NYEKLSKIAPTVPVSYNSSDWEEQLKEIGKLLNKE 113 (248)
T ss_pred HHHHhccCCCEEEeCCccHH-HHHHHHhhCCEEEEcCCCCCHHHHHHHHHHHhCcH
Confidence 46789999999999877665 66778888876664431 34567777777653
No 62
>PF13324 GCIP: Grap2 and cyclin-D-interacting; PDB: 3AY5_A.
Probab=33.56 E-value=70 Score=38.22 Aligned_cols=11 Identities=55% Similarity=0.326 Sum_probs=5.1
Q ss_pred HHHHHHhhcCC
Q 000317 293 LSWEAASSLRP 303 (1676)
Q Consensus 293 L~~eAv~~V~p 303 (1676)
.+-+.+..+.|
T Consensus 240 ~VDel~~slYp 250 (275)
T PF13324_consen 240 SVDELASSLYP 250 (275)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHhcC
Confidence 34444445554
No 63
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=32.90 E-value=82 Score=31.08 Aligned_cols=38 Identities=11% Similarity=0.163 Sum_probs=32.7
Q ss_pred HHhhHhcCCCeEEEecccccHHHHHHHHHcCCeEeecCC
Q 000317 386 VMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMK 424 (1676)
Q Consensus 386 lV~rI~~~~pnVVLveksVs~~Al~~L~~~gItvv~nVK 424 (1676)
...-+...++++|+|.+ +..-+...|.++||.++.-..
T Consensus 53 ~~~~l~~~~v~~vi~~~-iG~~a~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 53 AARLLALEGCDAVLVGG-IGGPAAAKLEAAGIKPIKAAE 90 (102)
T ss_pred HHHHHHHCCCcEEEEcc-cCccHHHHHHHcCCEEEEcCC
Confidence 44556678999999985 999999999999999998776
No 64
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=26.08 E-value=1.1e+02 Score=34.47 Aligned_cols=51 Identities=16% Similarity=0.298 Sum_probs=38.8
Q ss_pred hhHhcCCCeEEEecccc-cHHHHHHHHHcCCeEeecCCH-------HHHHHHHHHhCCc
Q 000317 388 DMIDMCHPNVVLVEKTV-SRDIQESILEKGMTLVFDMKL-------HRLERVARCTGSP 438 (1676)
Q Consensus 388 ~rI~~~~pnVVLveksV-s~~Al~~L~~~gItvv~nVK~-------~~LeRIAR~TGA~ 438 (1676)
++|++++||+||..... ..-....+.+.||.++.--.. ..++.|++.+|..
T Consensus 54 E~i~~l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~i~~lg~~~g~~ 112 (238)
T PF01497_consen 54 EAILALKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSSPFDDWKEQIRQLGKALGKE 112 (238)
T ss_dssp HHHHHT--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTTCSHHHHHHHHHHHHHHTSH
T ss_pred HHHHhCCCCEEEEeccccchHHHHHHhcccceEEEeecccchHHHHHHHHHHHHhcccH
Confidence 67899999999998888 667777788999988864432 3678888888875
No 65
>cd01146 FhuD Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.
Probab=25.87 E-value=1.3e+02 Score=34.86 Aligned_cols=52 Identities=19% Similarity=0.374 Sum_probs=37.2
Q ss_pred HhhHhcCCCeEEEecccccHHHHHHHHHcCCeEeecCC--HH----HHHHHHHHhCCc
Q 000317 387 MDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMK--LH----RLERVARCTGSP 438 (1676)
Q Consensus 387 V~rI~~~~pnVVLveksVs~~Al~~L~~~gItvv~nVK--~~----~LeRIAR~TGA~ 438 (1676)
+++|++++||+||+......-..+.|.+.+..++.... .. .++.+++.+|..
T Consensus 58 ~E~i~~l~PDlii~~~~~~~~~~~~l~~~~p~v~~~~~~~~~~~~~~i~~lg~~~g~~ 115 (256)
T cd01146 58 LEAIAALKPDLILGSASRHDEIYDQLSQIAPTVLLDSSPWLAEWKENLRLIAKALGKE 115 (256)
T ss_pred HHHHHhcCCCEEEeecccchhHHHHHHhhCCEEEecCCCcHHHHHHHHHHHHHHhCcH
Confidence 45789999999999887776555667777766666553 33 467777777754
No 66
>PF07450 HycH: Formate hydrogenlyase maturation protein HycH; InterPro: IPR010005 This family contains the bacterial formate hydrogenlyase maturation protein HycH, which is approximately 140 residues long. This may be required for the conversion of a precursor form of the large subunit of hydrogenlyase 3 into a mature form [].
Probab=25.08 E-value=55 Score=34.94 Aligned_cols=22 Identities=45% Similarity=0.733 Sum_probs=17.9
Q ss_pred CCccccceeEEeecCCceEEEeEEEeeec
Q 000317 1575 IDVMDYSLLVGVDSQRRELVCGIIDYLRQ 1603 (1676)
Q Consensus 1575 ~nvMDYSLLvGi~~~~~~l~vGIID~Lr~ 1603 (1676)
..||=|||-||-| +|+||||..
T Consensus 24 kqV~yYSLaIGHh-------vGvIDcle~ 45 (131)
T PF07450_consen 24 KQVMYYSLAIGHH-------VGVIDCLEK 45 (131)
T ss_pred hheeEEEeeeccc-------cceEeechh
Confidence 3588899999976 599999843
No 67
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=24.49 E-value=57 Score=32.53 Aligned_cols=43 Identities=19% Similarity=0.456 Sum_probs=30.9
Q ss_pred hccCCCCCCCCCChhcccceeeecCcEEEEEEEecCccccCCCCCCCcEEEeecCCCCCCCCCCCCCCceEEc
Q 000317 773 LNQRKQCASCSELPEAHFYYYARHNKQLTIRVKRLPDRIRLSGEAEGKLWMWSRCGRCKTANGVPKSTKRVVI 845 (1676)
Q Consensus 773 ~~~~~~C~sC~~pm~~H~r~YvH~~g~ltI~Ve~l~~~~~lpge~~~~I~MWs~Ck~C~~~~g~~~sTp~v~M 845 (1676)
..+.|.|+.|+.+ .| ++.. -.|| .|.+|+....-+..||.++|
T Consensus 32 ~~~~~~Cp~C~~~--~V---------------kR~a----------~GIW---~C~kCg~~fAGgay~P~t~~ 74 (89)
T COG1997 32 QRAKHVCPFCGRT--TV---------------KRIA----------TGIW---KCRKCGAKFAGGAYTPVTPA 74 (89)
T ss_pred HhcCCcCCCCCCc--ce---------------eeec----------cCeE---EcCCCCCeeccccccccchH
Confidence 5788999999997 22 2221 2588 59999987666777886665
No 68
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=23.62 E-value=1.8e+02 Score=35.81 Aligned_cols=56 Identities=9% Similarity=0.152 Sum_probs=46.4
Q ss_pred HHHHhhHhcCCCeEEEecccccHHHHHHHHHcCCeEeecCCHHHHHHHHHHhCCcee
Q 000317 384 KSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARCTGSPIL 440 (1676)
Q Consensus 384 ~~lV~rI~~~~pnVVLveksVs~~Al~~L~~~gItvv~nVK~~~LeRIAR~TGA~Iv 440 (1676)
..+++.|+..+|.+|+...+....+ +.|.++||.++..|..-..-+.+.-.||+++
T Consensus 72 ~~~l~vi~e~~v~~V~~~~G~P~~~-~~lk~~Gi~v~~~v~s~~~A~~a~~~GaD~v 127 (320)
T cd04743 72 AAQLAVVRAIKPTFALIAGGRPDQA-RALEAIGISTYLHVPSPGLLKQFLENGARKF 127 (320)
T ss_pred HHHHHHHHhcCCcEEEEcCCChHHH-HHHHHCCCEEEEEeCCHHHHHHHHHcCCCEE
Confidence 3467777889999999988887764 7799999999999988777777888898877
No 69
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=23.04 E-value=1.2e+02 Score=35.55 Aligned_cols=51 Identities=14% Similarity=0.263 Sum_probs=34.4
Q ss_pred HhhHhcCCCeEEEeccc-ccHHHHHHHHHcCCeEeecC--CH----HHHHHHHHHhCC
Q 000317 387 MDMIDMCHPNVVLVEKT-VSRDIQESILEKGMTLVFDM--KL----HRLERVARCTGS 437 (1676)
Q Consensus 387 V~rI~~~~pnVVLveks-Vs~~Al~~L~~~gItvv~nV--K~----~~LeRIAR~TGA 437 (1676)
+++|++++|||||+..+ -..-..+.|.+.||.++.-- .. ..++.+++.+|.
T Consensus 65 ~E~il~l~PDlVi~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~i~~lg~~~g~ 122 (260)
T PRK03379 65 LERIVALKPDLVLAWRGGNAERQVDQLASLGIKVMWVDATSIEQIANALRQLAPWSPQ 122 (260)
T ss_pred HHHHHhcCCCEEEEecCCCcHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 45789999999998643 23445577899999887542 11 235666666664
No 70
>PF12226 Astro_capsid_p: Turkey astrovirus capsid protein; InterPro: IPR022027 This family of proteins is found in viruses. Proteins in this family are typically between 241 and 261 amino acids in length. These proteins are capsid proteins from various astrovirus strains. ; PDB: 3TS3_D.
Probab=22.90 E-value=49 Score=36.46 Aligned_cols=51 Identities=25% Similarity=0.374 Sum_probs=30.6
Q ss_pred EEEEeCHHH---HHHHHHhcCCChHHHHHHhcccCcCCCCCCCcceeEEEecCCcEEEEe
Q 000317 1388 SVKCLYANQ---FRDLRSRCCPSELAYIDSLSRCRNWDAKGGKSKSFFVKTLDDRFIIKE 1444 (1676)
Q Consensus 1388 ~~~~y~p~~---F~~LR~~~gi~e~~yi~SLs~~~~~~~sgGKSGs~F~~T~D~rFIiKt 1444 (1676)
.++-|||.- =..|..+..+.|-+=+.|.. -..|+-+++||.|.|.||||=-
T Consensus 101 avkkYyP~TTnld~~lK~RlnL~EgDPViS~G------Dt~GRRaALFYRtSdEr~ill~ 154 (230)
T PF12226_consen 101 AVKKYYPGTTNLDQQLKDRLNLTEGDPVISMG------DTTGRRAALFYRTSDERYILLF 154 (230)
T ss_dssp TEEEB-GGG--S-HHHHHHHT--TT-EEEEEE------ETT--EEEEEEETTTTEEEEEE
T ss_pred hhhhcCCCCccHHHHHHHhhccccCCceeeec------CCCCceEEEEEeccCceEEEEE
Confidence 467788842 23566666666554444443 2569999999999999999853
No 71
>PRK15084 formate hydrogenlyase maturation protein HycH; Provisional
Probab=22.87 E-value=60 Score=34.69 Aligned_cols=22 Identities=45% Similarity=0.711 Sum_probs=18.0
Q ss_pred CCccccceeEEeecCCceEEEeEEEeeec
Q 000317 1575 IDVMDYSLLVGVDSQRRELVCGIIDYLRQ 1603 (1676)
Q Consensus 1575 ~nvMDYSLLvGi~~~~~~l~vGIID~Lr~ 1603 (1676)
..||=|||-||-| +|+||||..
T Consensus 26 ~qV~yYSLaIGHh-------vGvIDcle~ 47 (133)
T PRK15084 26 QQVMYYSLAIGHH-------VGVIDCLEA 47 (133)
T ss_pred hheeEEEeecccc-------cceEecchh
Confidence 4578899999977 499999843
No 72
>cd01140 FatB Siderophore binding protein FatB. These proteins have been shown to function as ABC-type initial receptors in the siderophore-mediated iron uptake in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=21.97 E-value=1.6e+02 Score=34.30 Aligned_cols=52 Identities=10% Similarity=0.140 Sum_probs=34.5
Q ss_pred HhhHhcCCCeEEEecccccHHHHHHHHHcCCeEeecCC-------HHHHHHHHHHhCCc
Q 000317 387 MDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMK-------LHRLERVARCTGSP 438 (1676)
Q Consensus 387 V~rI~~~~pnVVLveksVs~~Al~~L~~~gItvv~nVK-------~~~LeRIAR~TGA~ 438 (1676)
+++|++++|||||+...-.....+++...+|.++.--. ...++.+++++|-.
T Consensus 65 ~E~i~al~PDlvi~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~lg~~~g~~ 123 (270)
T cd01140 65 LEAIAALKPDLIIIGGRLAEKYDELKKIAPTIDLGADLKNYLESVKQNIETLGKIFGKE 123 (270)
T ss_pred HHHHhcCCCCEEEECCccHHHHHHHHHhCCeeEEecCchHHHHHHHHHHHHHHHHhCcH
Confidence 45789999999998765555556666666766554211 12477788887753
No 73
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=21.87 E-value=2.2e+02 Score=30.35 Aligned_cols=52 Identities=8% Similarity=0.098 Sum_probs=41.1
Q ss_pred HHHhhHhcCCCeEEEecccccHHHHHHHHHcCCeEeecCCHHHHHHHHHHhCC
Q 000317 385 SVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARCTGS 437 (1676)
Q Consensus 385 ~lV~rI~~~~pnVVLveksVs~~Al~~L~~~gItvv~nVK~~~LeRIAR~TGA 437 (1676)
.+.+-|++.|+|+|+|. .|.+-|..+|.++||-|+.-....+=+.|-....+
T Consensus 56 ~~a~~l~~~gvdvvi~~-~iG~~a~~~l~~~GIkv~~~~~~~V~e~i~~~~~g 107 (121)
T COG1433 56 RIAELLVDEGVDVVIAS-NIGPNAYNALKAAGIKVYVAPGGTVEEAIKAFLEG 107 (121)
T ss_pred HHHHHHHHcCCCEEEEC-ccCHHHHHHHHHcCcEEEecCCCCHHHHHHHHhcC
Confidence 35667889999999984 79999999999999999988775555555555443
No 74
>PHA02682 ORF080 virion core protein; Provisional
Probab=20.77 E-value=1.4e+02 Score=33.71 Aligned_cols=66 Identities=14% Similarity=0.130 Sum_probs=43.6
Q ss_pred eeeEEecCCCeeEeccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhhHHHHHHHHH
Q 000317 901 TTYNMCVPPQKLEFSNSINKWLKEEFQNVYTKGILLFSEVESSLKQIGSRFVGSTLNLQGSLKEFSVTSEILK 973 (1676)
Q Consensus 901 ~v~ev~lPp~~l~~~~~~~~~l~~e~~~v~~k~~~~f~sV~~rL~~ik~~~~~~~~~~~~~~~~i~eL~~~l~ 973 (1676)
-|+|--+|-..|+-..+..+.+++|+.+|.+-...+-.+-.+.+..|..- +..-+..|.+|+++|.
T Consensus 192 pvle~ripdkv~~~d~~~k~~ikkeladiadsvrdl~aeS~~LtrDIE~A-------KstTq~AIdDLRrLl~ 257 (280)
T PHA02682 192 PVLEPRIPDKIIDADNDDKDLIKKELADIADSVRDLNAESLSLTRDIENA-------KSTTQAAIDDLRRLLT 257 (280)
T ss_pred ccccccCchhhhhcccchHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH-------HhhHHHHHHHHHHHHh
Confidence 37888888888887777778899999999887777666655555555431 1112345566665553
No 75
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=20.45 E-value=53 Score=30.74 Aligned_cols=30 Identities=27% Similarity=0.840 Sum_probs=21.9
Q ss_pred CCcccccccccchHHHHhhhccccccccCCCceeeeeecccccccc
Q 000317 1 MCHHCGAELTRVKKEERKQENGKSLKLNNEGSIWSCRICGEKQERE 46 (1676)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (1676)
.|++||....+ +..+..+-|..||...-|.
T Consensus 30 ~C~~CG~~~~~----------------~~~~r~~~C~~Cg~~~~rD 59 (69)
T PF07282_consen 30 TCPRCGHRNKK----------------RRSGRVFTCPNCGFEMDRD 59 (69)
T ss_pred CccCccccccc----------------ccccceEEcCCCCCEECcH
Confidence 48889886654 4567788999998876554
No 76
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=20.29 E-value=1.2e+02 Score=35.03 Aligned_cols=51 Identities=16% Similarity=0.261 Sum_probs=32.2
Q ss_pred HhhHhcCCCeEEEecccccHH-HHHHHHH-cCCeEeecCCH-------HHHHHHHHHhCC
Q 000317 387 MDMIDMCHPNVVLVEKTVSRD-IQESILE-KGMTLVFDMKL-------HRLERVARCTGS 437 (1676)
Q Consensus 387 V~rI~~~~pnVVLveksVs~~-Al~~L~~-~gItvv~nVK~-------~~LeRIAR~TGA 437 (1676)
+++|++++||+||+....... ..+.|.+ .||.++.--.. ..++.+++.+|.
T Consensus 67 ~E~i~~l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~~~~~~~~~~i~~lg~~~g~ 126 (262)
T cd01147 67 YEKIAALKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGGDSLEDTPEQIRLLGKVLGK 126 (262)
T ss_pred HHHHHhcCCCEEEEecCCccchhHHHHHHhhCCCEEEEecCCchHhHHHHHHHHHHHhCC
Confidence 457899999999997665541 2333544 88886543221 235666666664
No 77
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=20.28 E-value=58 Score=27.74 Aligned_cols=32 Identities=31% Similarity=0.836 Sum_probs=18.7
Q ss_pred CCcccccccccchHHHHhhhccccccccCCCceeeeeecccccc
Q 000317 1 MCHHCGAELTRVKKEERKQENGKSLKLNNEGSIWSCRICGEKQE 44 (1676)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (1676)
.|.+|+|-|-. -.+.+..|..|.|.||+.+.+
T Consensus 4 rC~~C~aylNp------------~~~~~~~~~~w~C~~C~~~N~ 35 (40)
T PF04810_consen 4 RCRRCRAYLNP------------FCQFDDGGKTWICNFCGTKNP 35 (40)
T ss_dssp B-TTT--BS-T------------TSEEETTTTEEEETTT--EEE
T ss_pred ccCCCCCEECC------------cceEcCCCCEEECcCCCCcCC
Confidence 37888887643 235666889999999997653
Done!