Query 000317
Match_columns 1676
No_of_seqs 334 out of 1790
Neff 5.7
Searched_HMMs 29240
Date Tue Mar 26 18:36:43 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000317.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_93-97//hhsearch_pdb/000317hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ybx_A Phosphatidylinositol-5- 1.0 1 1 565.5 23.7 251 1384-1645 74-394 (394)
2 2gk9_A Phosphatidylinositol-4- 1.0 1 1 557.8 16.6 249 1384-1645 66-391 (392)
3 3iyg_G T-complex protein 1 sub 1.0 1 1 400.8 27.8 258 267-537 137-406 (515)
4 3iyg_A T-complex protein 1 sub 1.0 1 1 382.6 27.0 257 267-537 139-413 (529)
5 3aq1_B Thermosome subunit; gro 1.0 1 1 382.1 23.7 258 267-537 101-369 (500)
6 1a6d_B Thermosome (beta subuni 1.0 1 1 380.8 25.3 257 267-537 149-416 (543)
7 1q3q_A Thermosome alpha subuni 1.0 1 1 378.7 25.9 257 267-537 151-418 (548)
8 3p9d_F T-complex protein 1 sub 1.0 1 1 377.9 15.6 254 268-537 148-422 (546)
9 1a6d_A Thermosome (alpha subun 1.0 1 1 377.8 24.8 257 267-537 148-415 (545)
10 3iyg_Z T-complex protein 1 sub 1.0 1 1 377.0 24.6 253 267-537 137-410 (517)
No 1
>2ybx_A Phosphatidylinositol-5-phosphate 4-kinase type-2; transferase, signalling; HET: PHD; 2.56A {Homo sapiens} PDB: 1bo1_A
Probab=1.00 E-value=1 Score=565.55 Aligned_cols=251 Identities=26% Similarity=0.465 Sum_probs=228.8
Q ss_pred CCCEEEEEECHHHHHHHHHHCCCCHHHHHHHHCCCCCC-CCCCCCCCEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 97559999099999999986099958899973246768-88998754018974278379870599999999999999999
Q 000317 1384 KGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNW-DAKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYFK 1462 (1676)
Q Consensus 1384 ~~~~~~~~y~~~~F~~LR~~~~~~e~~fi~SLs~~~~w-~~sgGKSgs~F~~T~D~rFIiKtis~~E~~~fl~~lp~Yf~ 1462 (1676)
+.+|+|++|+|.+|++||+.||+++.+|++||++|..| .++||||||+||+|.|+|||||||++.|+++|+++||.||+
T Consensus 74 p~~f~~k~Y~P~~F~~LR~~~~i~~~dy~~Sl~~~~~~~~~s~GKSGs~F~~T~D~rfiIKti~~~E~~~l~~~lp~Y~~ 153 (394)
T 2ybx_A 74 PSHFKFKEYCPMVFRNLRERFGIDDQDFQNSLTRSAPLPNDSQARSGARFHTSYDKRYIIKTITSEDVAEMHNILKKYHQ 153 (394)
T ss_dssp CSEEEEEEESHHHHHHHHHHTTCCHHHHHHHHHSSCCEECC-----CCCEEECTTSSEEEEEECHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECHHHHHHHHHHHHHHHH
T ss_conf 88749999788999999998297999999985478764247899866879981797289996199999999999999999
Q ss_pred HHHHHCCCCCCCCHHEEEEEEEEEECCCCCCCCEEEEEEEEEECCCCC-CCCEEEECCCCCCCCCCCCCC--CCCCCCCC
Q ss_conf 996412799983023011067884205899951248999982036887-522356225753245556789--99952024
Q 000317 1463 YMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLTFER-NITRQYDLKGALHARYNTTVD--GSGDVLLD 1539 (1676)
Q Consensus 1463 yl~~~~~~~~~TlL~Ki~Gly~i~~k~~~~g~~~k~~~iVMeNlf~~~-~i~~~yDLKGS~~~R~~~~~~--~~~~VL~D 1539 (1676)
||.++ +++|||+||||+|+|+++ | .+.+||||+|||+++ .|+++||||||+++|++..++ +...||||
T Consensus 154 ~~~~~---~~~TLL~k~~Gly~v~~~----~--~~~~fvVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~~~~~~~~~LkD 224 (394)
T 2ybx_A 154 YIVEC---HGITLLPQFLGMYRLNVD----G--VEIYVIVTRNVFSHRLSVYRKYDLKGSTVAREASDKEKAKELPTLKD 224 (394)
T ss_dssp HHHHT---TTCCSSCCEEEEEEEEET----T--EEEEEEEEECSSCSSSCCSEEEEECCSSSCCCCCHHHHTSSSCEECH
T ss_pred HHHHC---CCCCCHHHHCEEEEEEEC----C--EEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEECC
T ss_conf 99840---898676653178999989----9--07999999367788764201002056445776675344567654111
Q ss_pred HHHHHHCCCCCCEECHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC------------------------------
Q ss_conf 01231038987100978999999999964752203996333104775337------------------------------
Q 000317 1540 QNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSLLVGVDSQ------------------------------ 1589 (1676)
Q Consensus 1540 ~n~~~~~~~~pi~l~~~~k~~L~~~l~~Dt~FL~~~nvMDYSLLvGvd~~------------------------------ 1589 (1676)
.||++.. .+|+|+++.|+.|++||++||.||+++|||||||||||+..
T Consensus 225 ~df~~~~--~~i~l~~~~k~~l~~qL~~D~~FL~~~~iMDYSLLvGIh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 302 (394)
T 2ybx_A 225 NDFINEG--QKIYIDDNNKKVFLEKLKKDVEFLAQLKLMDYSLLVGIHDVERAEQEEVECEENDGEEEGESDGTHPVGTP 302 (394)
T ss_dssp HHHHHTT--CCCCCCHHHHHHHHHHHHHHHHHHHHTTEESCEEEEEEEEHHHHHHHHHCC--------------------
T ss_pred CCHHHCC--CEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 1367469--81997899999999999999999987787664048777315543200002445555433445655445787
Q ss_pred ------------------------------------CCEEEEEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf ------------------------------------83499948875403580246888776505899998852493679
Q 000317 1590 ------------------------------------RRELVCGIIDYLRQYTWDKHLETWVKSSLVPKNVLPTVISPKDY 1633 (1676)
Q Consensus 1590 ------------------------------------~~~l~iGIID~Lr~Yt~~KklE~~vK~~~~~~~~~~Tvv~P~~Y 1633 (1676)
+.+||+|||||||+|||+||+|+|+|++..+.+..+|||+|++|
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~iyyiGIIDiLq~Y~~~KklE~~~Ks~~~~~~~~iS~V~P~~Y 382 (394)
T 2ybx_A 303 PDSPGNTLNSSPPLAPGEFDPNIDVYGIKCHENSPRKEVYFMAIIXILTHYDAKKKAAHAAKTVKHGAGAEISTVNPEQY 382 (394)
T ss_dssp ------------CCCTTCCCTTTSTTEEECCTTCSSCEEEEEEEECCCEESCC-------------------CCCCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCEECHHHH
T ss_conf 55534444322223655456444323434555777743799999986310784089999999861589999856998999
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999999983103
Q 000317 1634 KRRFRKFMSTHF 1645 (1676)
Q Consensus 1634 ~~RF~~~m~~yf 1645 (1676)
++||++||+++|
T Consensus 383 ~~RF~~fm~~if 394 (394)
T 2ybx_A 383 SKRFLDFIGHIL 394 (394)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999869
No 2
>2gk9_A Phosphatidylinositol-4-phosphate 5-kinase, type II, gamma; phosphoinositide, structural genomics, structural genomics consortium, SGC, transferase; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=557.79 Aligned_cols=249 Identities=27% Similarity=0.475 Sum_probs=226.9
Q ss_pred CCCEEEEEECHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 97559999099999999986099958899973246768889987540189742783798705999999999999999999
Q 000317 1384 KGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNWDAKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYFKY 1463 (1676)
Q Consensus 1384 ~~~~~~~~y~~~~F~~LR~~~~~~e~~fi~SLs~~~~w~~sgGKSgs~F~~T~D~rFIiKtis~~E~~~fl~~lp~Yf~y 1463 (1676)
+.+|+|++|+|.+|++||+.||+++.+|++||++|..|. ++|||| +||+|.|+|||||||++.|+++|+++||.||+|
T Consensus 66 p~~f~~k~Y~P~~F~~LR~~~~i~~~dy~~Sl~~~~~~~-s~GKSG-~F~~T~D~rfiIKti~~~E~~~l~~~lp~Y~~~ 143 (392)
T 2gk9_A 66 PSHFKFKEYCPQVFRNLRDRFGIDDQDYLVSLTRNPPSE-SEGSDG-RFLISYDRTLVIKEVSSEDIADMHSNLSNYHQY 143 (392)
T ss_dssp CSSBEEEEESHHHHHHHHHTTTCCHHHHHHHHHSSCCCC-CC------CCCCTTSSEEEEECCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECHHHHHHHHHHHCCCHHHHHHHHCCCCCCC-CCCCCC-EEEECCCCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_conf 886499997979999999980989899998743787455-798762-379869986899960999999999999999999
Q ss_pred HHHHCCCCCCCCHHEEEEEEEEEECCCCCCCCEEEEEEEEEECCCCC-CCCEEEECCCCCCCCCCCCCCC--CCCCCCCH
Q ss_conf 96412799983023011067884205899951248999982036887-5223562257532455567899--99520240
Q 000317 1464 MNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLTFER-NITRQYDLKGALHARYNTTVDG--SGDVLLDQ 1540 (1676)
Q Consensus 1464 l~~~~~~~~~TlL~Ki~Gly~i~~k~~~~g~~~k~~~iVMeNlf~~~-~i~~~yDLKGS~~~R~~~~~~~--~~~VL~D~ 1540 (1676)
|.++ +++|||+||||+|+|+++ |+ +.+||||+|+|+++ .|+++||||||+++|++..++. ...||||.
T Consensus 144 ~~~~---~~~TLL~k~~Gly~v~~~----~~--~~~~vVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~~~~~~~~~LkD~ 214 (392)
T 2gk9_A 144 IVKC---HGNTLLPQFLGMYRVSVD----NE--DSYMLVMRNMFSHRLPVHRKYDLKGSLVSREASDKEKVKELPTLRDM 214 (392)
T ss_dssp HHHT---TSCSSSCCEEEEEECCBS----SC--CCEEEEEECSSCSSSCCSCCCEECC-----------------CCBTT
T ss_pred HHHH---CCCCCHHHHCEEEEEEEC----CE--EEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEECCC
T ss_conf 9840---798655653068999989----90--79999993677887641034450565457766752235666611131
Q ss_pred HHHHHCCCCCCEECHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCC------------------------------
Q ss_conf 12310389871009789999999999647522039963331047753378------------------------------
Q 000317 1541 NFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSLLVGVDSQR------------------------------ 1590 (1676)
Q Consensus 1541 n~~~~~~~~pi~l~~~~k~~L~~~l~~Dt~FL~~~nvMDYSLLvGvd~~~------------------------------ 1590 (1676)
||++.. .+|+|+++.|+.|++||++||.||+++|||||||||||+...
T Consensus 215 df~~~~--~~i~l~~~~k~~l~~~l~~D~~FL~~~~iMDYSLLvGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (392)
T 2gk9_A 215 DFLNKN--QKVYIGEEEKKIFLEKLKRDVEFLVQLKIMDYSLLLGIHDIIRGSEPEEEAPVREDESEVDGDCSLTGPPAL 292 (392)
T ss_dssp C--CCC--CCCCC----CHHHHHHHHHHHHHHHHTTCCCCCEECCCBCC-------------------------------
T ss_pred CHHHCC--CEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 156259--869878999999999999999999876876630587663155432112222344555545553323456432
Q ss_pred --------------------------------------------CEEEEEEEEEEECCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf --------------------------------------------349994887540358024688877650589999885
Q 000317 1591 --------------------------------------------RELVCGIIDYLRQYTWDKHLETWVKSSLVPKNVLPT 1626 (1676)
Q Consensus 1591 --------------------------------------------~~l~iGIID~Lr~Yt~~KklE~~vK~~~~~~~~~~T 1626 (1676)
..||+|||||||+|||+||+|||+|++..+.+..+|
T Consensus 293 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~iyylGIIDiLq~Y~~~KklE~~~Ks~~~~~~~~iS 372 (392)
T 2gk9_A 293 VGSYGTSPEGIGGYIHSHRPLGPGEFESFIDVYAIRSAEGAPQKEVYFMGLIDILTQYDAKKKAAHAAKTVKHGAGAEIS 372 (392)
T ss_dssp --------------------------------------------CBCCCEECCCC-------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCHHHHHHHHHHHHCCCCCCCCC
T ss_conf 24567885453333432222366656544432343455567775279999977400087008999999986157899974
Q ss_pred CCCHHHHHHHHHHHHHHHC
Q ss_conf 2493679999999983103
Q 000317 1627 VISPKDYKRRFRKFMSTHF 1645 (1676)
Q Consensus 1627 vv~P~~Y~~RF~~~m~~yf 1645 (1676)
||+|++|++||++||+++|
T Consensus 373 ~v~P~~Y~~RF~~fm~~~~ 391 (392)
T 2gk9_A 373 TVHPEQYAKRFLDFITNIF 391 (392)
T ss_dssp --CHHHHHHHHHHHTC---
T ss_pred EECHHHHHHHHHHHHHHHH
T ss_conf 6898999999999999960
No 3
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=1.00 E-value=1 Score=400.80 Aligned_cols=258 Identities=21% Similarity=0.392 Sum_probs=241.7
Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCC
Q ss_conf 99999864345789870259999999999998602789889986692357069981289978732698489920467899
Q 000317 267 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 346 (1676)
Q Consensus 267 l~qLL~~a~isl~sK~~~~w~d~ls~L~veAv~~V~pd~~~gd~mDi~~yVKIKkI~GGs~~dS~vI~GVV~~Knvahk~ 346 (1676)
...|++.+.+++++|..+.|.+.+++++++|+..|.++......+|+.+||+|+|++||++.||++|+|++|+|.+.|++
T Consensus 137 ~~~l~~va~tsl~sK~i~~~~~~~~~i~vdav~~V~~~~~~~~~~dl~~~I~I~ki~Ggs~~ds~lv~G~v~dk~~~~~~ 216 (515)
T 3iyg_G 137 RDTMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPR 216 (515)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHEEEEEEECCCCCCCCEEEEEEEEECCCCCCC
T ss_conf 99999999987148752557999999999999842335688854564230589983699801016884179827878988
Q ss_pred CCCCCCCCCEEEEEEECCCCCCC------CC---CHHH-HHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf 98522698489994304646656------66---1877-99999999999966720798199954663299999999849
Q 000317 347 MPTEYKNPRLLLIRGVLGLSSSG------LS---SFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 416 (1676)
Q Consensus 347 Mp~~i~nPRILLL~~~LEy~r~~------l~---Sle~-i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L~~~g 416 (1676)
||++++||||||++|+|||++.+ ++ ++.+ +++|++|++++|++|++.||+||+++++|+++|++||.++|
T Consensus 217 m~~~ien~kIll~~~~Le~~k~e~~~~v~is~~~~l~~~l~~E~~~l~~~v~kI~~~g~~vIi~~~~I~~~al~~L~~~~ 296 (515)
T 3iyg_G 217 MRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRAN 296 (515)
T ss_pred CCCEEEEEEEEEECCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCC
T ss_conf 86144410799981555444234674289678999999999999999999999994799899978866789999998789
Q ss_pred CEEEECCCHHHHHHHHHHHCCCEECCCC-CCCCCCCC-CCEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEEEE
Q ss_conf 8686069978999999995994611356-89997312-422999993123445447998898259999947999658999
Q 000317 417 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKH-CDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVL 494 (1676)
Q Consensus 417 Itvv~nVK~~~LeRIAR~TGA~IisSid-L~~~~LG~-C~~f~v~~f~~~~~~~~~~~k~~~Ktliffegc~~~lgcTIL 494 (1676)
|++++++++.+|+|||++|||.|+++++ ++...||+ |+.|++.++++ ++|+||+||+++.+|||+
T Consensus 297 I~av~~~~k~~leria~~tGa~ii~~l~~l~~~~LG~~a~~v~~~~~g~-------------~~~~~i~g~~~~~~~TIl 363 (515)
T 3iyg_G 297 ITAIRRVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEIKKIGD-------------EYFTFITECKDPKACTIL 363 (515)
T ss_pred CEEECCCCHHHHHHHHHHHCCEEECCCCCCCHHHCCCCCCEEEEEEECC-------------CEEEEEECCCCCCEEEEE
T ss_conf 5666667889999999995992642102367666287562899999878-------------169999578888768999
Q ss_pred EECCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 7079998999999999999999999764290750697012368
Q 000317 495 LKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 537 (1676)
Q Consensus 495 LRG~s~~~L~evKrvl~dai~vv~~l~lE~s~l~ggGa~~~~~ 537 (1676)
|||+|+.+|+|+||+++||+++++++..+..+|+||||++...
T Consensus 364 lrG~t~~~l~E~er~i~Dal~~~r~~~~~~~ivpGGGa~e~~~ 406 (515)
T 3iyg_G 364 LRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAV 406 (515)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHH
T ss_conf 8489889999999999999999999962896893788999999
No 4
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=1.00 E-value=1 Score=382.55 Aligned_cols=257 Identities=18% Similarity=0.233 Sum_probs=237.7
Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCC
Q ss_conf 999998643457898702599999999999986027898899-8669235706998128997873269848992046789
Q 000317 267 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDG-KSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHK 345 (1676)
Q Consensus 267 l~qLL~~a~isl~sK~~~~w~d~ls~L~veAv~~V~pd~~~g-d~mDi~~yVKIKkI~GGs~~dS~vI~GVV~~Knvahk 345 (1676)
...|++.+.++++||....|.+.|++|+++|+..|.+....| ..+|+ ++|+|++++||++.||++|+|++|+|.+.|+
T Consensus 139 ~e~l~~va~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~~g~~~~dv-~~I~I~k~~G~~~~ds~lv~G~v~dk~~~~~ 217 (529)
T 3iyg_A 139 RDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQPRYPV-NSINVLKAHGRSQMESMLINGYALNCVVGSQ 217 (529)
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CEEEEEEECCCCCCCEEEEEEEEEECCCCCC
T ss_conf 899999999985667553207899999999999975124478766654-4179999559885543899616874586435
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCC------CC---CHHH-HHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHC
Q ss_conf 998522698489994304646656------66---1877-9999999999996672079819995466329999999984
Q 000317 346 HMPTEYKNPRLLLIRGVLGLSSSG------LS---SFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEK 415 (1676)
Q Consensus 346 ~Mp~~i~nPRILLL~~~LEy~r~~------l~---Sle~-i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L~~~ 415 (1676)
.||++++||||++++|+|||++.+ +. .++. .++|++|++.++++|++.|+|||+++++|++.|++||.++
T Consensus 218 ~m~~~ien~kIlll~~~le~~k~e~~~~v~i~~~~~~~~i~~~E~~~l~~~v~kI~~~g~nvvi~~~~I~d~al~~L~~~ 297 (529)
T 3iyg_A 218 GMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEA 297 (529)
T ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHC
T ss_conf 68751688669996277654535678549968999999999999999999999999549989998788778999999986
Q ss_pred CCEEEECCCHHHHHHHHHHHCCCEECCCC-CC------CCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 98686069978999999995994611356-89------997312422999993123445447998898259999947999
Q 000317 416 GMTLVFDMKLHRLERVARCTGSPILSSGS-LT------SQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTR 488 (1676)
Q Consensus 416 gItvv~nVK~~~LeRIAR~TGA~IisSid-L~------~~~LG~C~~f~v~~f~~~~~~~~~~~k~~~Ktliffegc~~~ 488 (1676)
||++++++++.+|+|||++|||.|+++++ +. ..+||+|+.|++++++. ++|+||+||+.+
T Consensus 298 gI~av~~v~k~~leria~~tGa~iv~~~~~l~~~e~~~~~~LG~a~~v~~~~ig~-------------~~~~~~~g~~~~ 364 (529)
T 3iyg_A 298 GAMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICD-------------DELILIKNTKAR 364 (529)
T ss_pred CCCEECCCCHHHHHHHHHHHCCEEECCHHCCCCHHCCCHHHCCCCEEEEEEEECC-------------CEEEEEECCCCC
T ss_conf 9803634798889999998599566140104531005763376543899998679-------------539999757998
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 6589997079998999999999999999999764290750697012368
Q 000317 489 LGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 537 (1676)
Q Consensus 489 lgcTILLRG~s~~~L~evKrvl~dai~vv~~l~lE~s~l~ggGa~~~~~ 537 (1676)
.+|||+|||+++.+|+|+||+++||++++++++.++++|+||||+|...
T Consensus 365 ~~~TI~lrG~t~~~l~E~er~l~Dal~v~r~~v~~~~iVpGGGa~E~~l 413 (529)
T 3iyg_A 365 TSASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAAL 413 (529)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHH
T ss_conf 6589997786277999999999999999999963890884786799999
No 5
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}
Probab=1.00 E-value=1 Score=382.09 Aligned_cols=258 Identities=22% Similarity=0.361 Sum_probs=240.8
Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCC
Q ss_conf 99999864345789870259999999999998602789889986692357069981289978732698489920467899
Q 000317 267 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 346 (1676)
Q Consensus 267 l~qLL~~a~isl~sK~~~~w~d~ls~L~veAv~~V~pd~~~gd~mDi~~yVKIKkI~GGs~~dS~vI~GVV~~Knvahk~ 346 (1676)
.+.|++.+.++++||....|.+.|++|+++|+..|.++......+|+.++|+|+|++||+..||++++|++|+|.+.|+.
T Consensus 101 ~~~l~~va~tsl~sKi~~~~~~~i~~li~dAv~~v~~~~~g~~~~di~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~ 180 (500)
T 3aq1_B 101 EAALIKIAGTAITGKGAEAYKEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSIDDSELIDGLVIDKERSHPN 180 (500)
T ss_dssp HHHHHHHHHTTCCSSSTTSSHHHHHHHHHHHHTTSEECCSSSCEECHHHHEEEEEEESSCGGGCEEESEEEESCCCSSTT
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEEEECCCCCC
T ss_conf 78999999998623113555789999999999996133468744451122799983589800117882269940578899
Q ss_pred CCCCCCCCCEEEEEEECCCCCCC------C---CCHHH-HHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf 98522698489994304646656------6---61877-99999999999966720798199954663299999999849
Q 000317 347 MPTEYKNPRLLLIRGVLGLSSSG------L---SSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 416 (1676)
Q Consensus 347 Mp~~i~nPRILLL~~~LEy~r~~------l---~Sle~-i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L~~~g 416 (1676)
||++++||||||++++|||++.+ + .+++. +++|++|++.++++|++.+++||+++++|++.|++||.++|
T Consensus 181 m~~~i~n~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~ 260 (500)
T 3aq1_B 181 MPEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASGANVVFCQKGIDDMAQYYIEKAG 260 (500)
T ss_dssp SCSEEEEEEEEEESSCBCC-------------------------CHHHHHHHHHHTTCCSEEEESSCBCHHHHHHHHHTT
T ss_pred CCCCCCCCEEEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCC
T ss_conf 85443598799993776666544632476489999999999999999999999997493999987776779999998789
Q ss_pred CEEEECCCHHHHHHHHHHHCCCEECCCC-CCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEE
Q ss_conf 8686069978999999995994611356-899973124229999931234454479988982599999479996589997
Q 000317 417 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLL 495 (1676)
Q Consensus 417 Itvv~nVK~~~LeRIAR~TGA~IisSid-L~~~~LG~C~~f~v~~f~~~~~~~~~~~k~~~Ktliffegc~~~lgcTILL 495 (1676)
|++++++++.+|+|||++|||.|+++++ ++...||+|+.|++.+++. ++|+||+||+.+..|||+|
T Consensus 261 I~av~~~~k~~le~ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~ig~-------------~~~~~~~g~~~~~~~TI~l 327 (500)
T 3aq1_B 261 IYAVRRVKKSDLKRLSKVTGATIIQDLDQITTEDVGTAGLVEEKEVRG-------------GKMTYVTGCQNSKAVTVLL 327 (500)
T ss_dssp CEEECSCCHHHHHHHHHHHCCCCBSCTTCCCSTTCEEEEEEEEEECSS-------------SEEEEEEEETTCCCEEEEE
T ss_pred EEEEEECCHHHHHHHHHHHCCEEECCCCCCCHHHCCCCEEEEEEEECC-------------EEEEEEECCCCCCEEEEEE
T ss_conf 899972799999999998499574560118986788760899998457-------------6899997788875699993
Q ss_pred ECCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 079998999999999999999999764290750697012368
Q 000317 496 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 537 (1676)
Q Consensus 496 RG~s~~~L~evKrvl~dai~vv~~l~lE~s~l~ggGa~~~~~ 537 (1676)
||+++.+|+|+||+++||++++++++.++++|+||||++...
T Consensus 328 rG~t~~~l~E~er~l~Dal~~~r~~~~~~~iVpGGGa~e~~~ 369 (500)
T 3aq1_B 328 HGGTEHVVDSLDHALNDALHVVGVVIEDGKVVVGGGSSEVEL 369 (500)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHHHHHHHSEEEETTTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 589677999999999989999999997888788872999999
No 6
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B
Probab=1.00 E-value=1 Score=380.85 Aligned_cols=257 Identities=21% Similarity=0.332 Sum_probs=241.0
Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCC
Q ss_conf 99999864345789870259999999999998602789889986692357069981289978732698489920467899
Q 000317 267 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 346 (1676)
Q Consensus 267 l~qLL~~a~isl~sK~~~~w~d~ls~L~veAv~~V~pd~~~gd~mDi~~yVKIKkI~GGs~~dS~vI~GVV~~Knvahk~ 346 (1676)
...|++.+.++++||....|.+.|++|+++|+..|.++......+|+ ++|+|+|++||+..||++++|++|+|.+.|+.
T Consensus 149 ~~~l~~va~tsl~sKi~~~~~~~i~~livdAv~~v~~~~~g~~~~d~-~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~ 227 (543)
T 1a6d_B 149 KALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDF-DNIQVVKKQGGAIDDTQLINGIIVDKEKVHPG 227 (543)
T ss_dssp HHHHHHHHHHHHTTSGGGGGHHHHHHHHHHHHHHHEEECSSSEEECG-GGEEEEEEESSCGGGCEEESEEEESCCCSSTT
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC-CEEEEEEECCCCCCCEEEECCEEEECCCCCCC
T ss_conf 79999999998525424454779999999999984533368744334-44899983689812226873489831778888
Q ss_pred CCCCCCCCCEEEEEEECCCCCCC------C---CCHHH-HHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf 98522698489994304646656------6---61877-99999999999966720798199954663299999999849
Q 000317 347 MPTEYKNPRLLLIRGVLGLSSSG------L---SSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 416 (1676)
Q Consensus 347 Mp~~i~nPRILLL~~~LEy~r~~------l---~Sle~-i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L~~~g 416 (1676)
||++++||||||++++|||++.+ + .+++. +++|++|++.++++|+..|++||+++++|++.|++||.++|
T Consensus 228 m~~~ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~ 307 (543)
T 1a6d_B 228 MPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAG 307 (543)
T ss_dssp SCSEEEEEEEEEESSCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHHTT
T ss_pred CCCEECCCEEEEEECCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCC
T ss_conf 75331387699992455644345774389688999999999999999999999997299899988886889999998789
Q ss_pred CEEEECCCHHHHHHHHHHHCCCEECCCC-CCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEE
Q ss_conf 8686069978999999995994611356-899973124229999931234454479988982599999479996589997
Q 000317 417 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLL 495 (1676)
Q Consensus 417 Itvv~nVK~~~LeRIAR~TGA~IisSid-L~~~~LG~C~~f~v~~f~~~~~~~~~~~k~~~Ktliffegc~~~lgcTILL 495 (1676)
|++++++++.+|+|||++|||.|+++++ ++...||+|+.|++.+++. ++|+||+||+.+.+|||+|
T Consensus 308 I~av~~v~k~~le~ia~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~-------------~~~~~~~g~~~~~~~TI~l 374 (543)
T 1a6d_B 308 IYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGE-------------DYMTFVTGCKNPKAVSILV 374 (543)
T ss_dssp CEEECSCCHHHHHHHHHHHTCCEESCGGGCCGGGCEEEEEEEEEEETT-------------EEEEEEEEESSSSCEEEEE
T ss_pred EEEECCCCHHHHHHHHHHHCCCEECCCCCCCHHHCCCCEEEEEEEECC-------------CEEEEEECCCCCCEEEEEE
T ss_conf 668646899999999998299265551449987788763899999668-------------1499996688875599996
Q ss_pred ECCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 079998999999999999999999764290750697012368
Q 000317 496 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 537 (1676)
Q Consensus 496 RG~s~~~L~evKrvl~dai~vv~~l~lE~s~l~ggGa~~~~~ 537 (1676)
||+++.+|+|+||+++||++++++++.++++|+||||++...
T Consensus 375 rG~t~~~l~E~er~l~DAl~~~r~a~~~~~ivpGGGa~e~~~ 416 (543)
T 1a6d_B 375 RGETEHVVDEMERSITDSLHVVASALEDGAYAAGGGATAAEI 416 (543)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHHHHHHHCEEEETTTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 579777999999999999999999997888167864999999
No 7
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A
Probab=1.00 E-value=1 Score=378.66 Aligned_cols=257 Identities=24% Similarity=0.389 Sum_probs=240.7
Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCC
Q ss_conf 99999864345789870259999999999998602789889986692357069981289978732698489920467899
Q 000317 267 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 346 (1676)
Q Consensus 267 l~qLL~~a~isl~sK~~~~w~d~ls~L~veAv~~V~pd~~~gd~mDi~~yVKIKkI~GGs~~dS~vI~GVV~~Knvahk~ 346 (1676)
.+.|++.+.++++||....|.+.|++|+++|+..|.++......+|+ ++|+|+|++||+..||++++|++|+|.+.|+.
T Consensus 151 ~~~l~~va~tsl~sKi~~~~~~~i~~livdAv~~V~~~~~g~~~~d~-~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~ 229 (548)
T 1q3q_A 151 EETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDL-DNIKFEKKAGEGVEESELVRGVVIDKEVVHPR 229 (548)
T ss_dssp HHHHHHHHHHHSCSSTTGGGHHHHHHHHHHHHHHHCEESSSSEECCG-GGEEEEEEEBSCGGGCEEESSEEESCCCSSTT
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC-CEEEEEEECCCCCCCEEEEEEEEEECCCCCCC
T ss_conf 89999999987503002455579999999999984434578754557-73899994489830238971089841577899
Q ss_pred CCCCCCCCCEEEEEEECCCCCCC------CC---CHHH-HHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf 98522698489994304646656------66---1877-99999999999966720798199954663299999999849
Q 000317 347 MPTEYKNPRLLLIRGVLGLSSSG------LS---SFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 416 (1676)
Q Consensus 347 Mp~~i~nPRILLL~~~LEy~r~~------l~---Sle~-i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L~~~g 416 (1676)
||++++||||||++++|||++.+ ++ +++. +++|++|++.++++|++.+++||+++++|++.|++||.++|
T Consensus 230 m~~~ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~ 309 (548)
T 1q3q_A 230 MPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYG 309 (548)
T ss_dssp SCSEESSEEEEEECSCBSCCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEESSCBCHHHHHHHHHTT
T ss_pred CCCEECCCEEEEEECCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCC
T ss_conf 85651488799992676754346784399688999999999999999999999998596999986785889999999879
Q ss_pred CEEEECCCHHHHHHHHHHHCCCEECCCC-CCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEE
Q ss_conf 8686069978999999995994611356-899973124229999931234454479988982599999479996589997
Q 000317 417 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLL 495 (1676)
Q Consensus 417 Itvv~nVK~~~LeRIAR~TGA~IisSid-L~~~~LG~C~~f~v~~f~~~~~~~~~~~k~~~Ktliffegc~~~lgcTILL 495 (1676)
|++++++++.+|+|||++|||.|+++++ ++...||+|+.|++.+++. ++|+||+||+.+..|||+|
T Consensus 310 I~av~~~~k~~le~ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~-------------~~~~~~~g~~~~~~~TI~l 376 (548)
T 1q3q_A 310 IMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAG-------------ENMIFVEGCKNPKAVTILI 376 (548)
T ss_dssp CEEECSCCHHHHHHHHHHHCCCCBSSGGGCCGGGCEEESEEEEEEETT-------------EEEEEEECCSSCSSEEEEE
T ss_pred CEEECCCCHHHHHHHHHHHCCEEECCCCCCCHHHCCCCEEEEEEEECC-------------CEEEEEECCCCCCEEEEEE
T ss_conf 578733799999999998599475552549987788763899999668-------------3399996589997699997
Q ss_pred ECCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 079998999999999999999999764290750697012368
Q 000317 496 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 537 (1676)
Q Consensus 496 RG~s~~~L~evKrvl~dai~vv~~l~lE~s~l~ggGa~~~~~ 537 (1676)
||+++.+|+|+||+++||++++++++.+.++|+||||+|...
T Consensus 377 rG~te~~l~E~er~l~DAl~~~r~a~~~~~ivpGGGa~e~~~ 418 (548)
T 1q3q_A 377 RGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIEL 418 (548)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHHHHHHSCEEEECTTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 789767899999999979999999997788056875999999
No 8
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f*
Probab=1.00 E-value=1 Score=377.86 Aligned_cols=254 Identities=19% Similarity=0.260 Sum_probs=236.6
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCCC
Q ss_conf 99998643457898702599999999999986027898899866923570699812899787326984899204678999
Q 000317 268 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 347 (1676)
Q Consensus 268 ~qLL~~a~isl~sK~~~~w~d~ls~L~veAv~~V~pd~~~gd~mDi~~yVKIKkI~GGs~~dS~vI~GVV~~Knvahk~M 347 (1676)
..|++.+.+++++|....|.+.|++++++|+..|.+. .+..+|+ ++|+|+|++||+..||++|+|++|+|.+.|++|
T Consensus 148 ~~L~~vA~tsl~sKi~~~~~d~la~l~vdaV~~V~~~--~~~~~dl-~~I~i~ki~Gg~~~ds~lv~G~v~dk~~~~~~m 224 (546)
T 3p9d_F 148 EFLLQVARSSLLTKVDADLTEVLTPIVTDAVLSVYDA--QADNLDL-HMVEIMQMQHLSPKDTTFIKGLVLDHGGRHPDM 224 (546)
T ss_dssp HHHHHHHHHHTCSTTHHHHCSSHHHHHHHHHHHTHHH--HHTTCCG-GGEEEECCCCSCTTTCCCCSSCEESCCCCSSSS
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEEECC--CCCCCCC-HHEEEEEECCCCCCCCEEEEEEEEECCCCCCCC
T ss_conf 9999999998178764459999999998862574037--8986662-026999955887121279866998246665567
Q ss_pred CCCCCCCCEEEEEEECCCCCCC---------CCCHHH-HHHHHHHHHHHHHHHHCCC----------CEEEEECCCCCHH
Q ss_conf 8522698489994304646656---------661877-9999999999996672079----------8199954663299
Q 000317 348 PTEYKNPRLLLIRGVLGLSSSG---------LSSFKA-MEQEKDQLKSVMDMIDMCH----------PNVVLVEKTVSRD 407 (1676)
Q Consensus 348 p~~i~nPRILLL~~~LEy~r~~---------l~Sle~-i~QE~eyL~~lV~rI~~~~----------pnVVLveksVs~~ 407 (1676)
|++++||+|||++|+|||++.+ ..+++. +++|++|+++.+++|+.++ |+||+++++|++.
T Consensus 225 ~~~~en~kIll~~~~Le~~k~e~~~~~~i~~~~~~~~~~~~E~~~~~~~v~~I~~~~~~v~~~~~g~~~vIi~~k~I~~~ 304 (546)
T 3p9d_F 225 PTRVKNAYVLILNVSLEYEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDPM 304 (546)
T ss_dssp CSSBCSCCCCEECCCSSSCCCSSCBCCCCCSSSCHHHHHHHHHHHHHHHHHHHHHCC-----------CEEEESSCCCHH
T ss_pred CCEECCCEEEEECCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH
T ss_conf 52630766999627666554556744997689999999999999999999999999998742015886499846767689
Q ss_pred HHHHHHHCCCEEEECCCHHHHHHHHHHHCCCEECCCC-CCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 9999998498686069978999999995994611356-899973124229999931234454479988982599999479
Q 000317 408 IQESILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCP 486 (1676)
Q Consensus 408 Al~~L~~~gItvv~nVK~~~LeRIAR~TGA~IisSid-L~~~~LG~C~~f~v~~f~~~~~~~~~~~k~~~Ktliffegc~ 486 (1676)
|++||.++||++++++++.+|+|||++|||.|+++++ ++...||+|+.|++++++. ++|+||+||+
T Consensus 305 Al~~L~~~gI~~vr~v~~~~leria~~tGa~ii~~l~~l~~~~LG~a~~v~~~~ig~-------------~~~~~i~g~~ 371 (546)
T 3p9d_F 305 SLDVFAKHNILALRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGE-------------EKFTYVTENT 371 (546)
T ss_dssp HHHHHTTTTCEEECCCCHHHHHHHHHTTTBCCCCCCSSCSTTCCBCCCCBCBCCCSS-------------CCCEECSSCS
T ss_pred HHHHHHHCCCEEEECCCHHHHHHHHHHHCCEEECCHHHCCHHHCCCCCEEEEEEECC-------------CEEEEEECCC
T ss_conf 999999889846813798889999998598794562008986788562799998469-------------4699995689
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 996589997079998999999999999999999764290750697012368
Q 000317 487 TRLGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 537 (1676)
Q Consensus 487 ~~lgcTILLRG~s~~~L~evKrvl~dai~vv~~l~lE~s~l~ggGa~~~~~ 537 (1676)
.+.+|||+|||+|+.+|+|+||+++||++++++++.++++|+||||++...
T Consensus 372 ~~~~~tI~lrG~te~~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~ 422 (546)
T 3p9d_F 372 DPKSCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYIAL 422 (546)
T ss_dssp CCSCEEEECCCSCHHHHHHHHHHHHHHHHHHHHHTTSCCEEETTTHHHHHH
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHH
T ss_conf 975589997798778999999999999999999833995995887999999
No 9
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*
Probab=1.00 E-value=1 Score=377.77 Aligned_cols=257 Identities=23% Similarity=0.338 Sum_probs=241.2
Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCC
Q ss_conf 99999864345789870259999999999998602789889986692357069981289978732698489920467899
Q 000317 267 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 346 (1676)
Q Consensus 267 l~qLL~~a~isl~sK~~~~w~d~ls~L~veAv~~V~pd~~~gd~mDi~~yVKIKkI~GGs~~dS~vI~GVV~~Knvahk~ 346 (1676)
.+.|++.+.++++||....|.+.|++|+++|+..|.++......+|+ ++|+|+|++||+..||++++|++|+|.+.|+.
T Consensus 148 ~~~l~~va~tsl~sKi~~~~~~~i~~livdAv~~v~~~~~g~~~~d~-~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~ 226 (545)
T 1a6d_A 148 DATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDT-ANIKVDKKNGGSVNDTQFISGIVIDKEKVHSK 226 (545)
T ss_dssp HHHHHHHHHHHTTTSSCCSTHHHHHHHHHHHHHHHCEESSSSEECCG-GGEEEEECCCSCSTTCEEESEEEESCCCSCTT
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC-CEEEEEEECCCCCEEEEEEEEEEEECCCCCCC
T ss_conf 99999999998735403454779999999999997233678753434-31799995589720027884079822578899
Q ss_pred CCCCCCCCCEEEEEEECCCCCCC---------CCCHHH-HHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf 98522698489994304646656---------661877-99999999999966720798199954663299999999849
Q 000317 347 MPTEYKNPRLLLIRGVLGLSSSG---------LSSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 416 (1676)
Q Consensus 347 Mp~~i~nPRILLL~~~LEy~r~~---------l~Sle~-i~QE~eyL~~lV~rI~~~~pnVVLveksVs~~Al~~L~~~g 416 (1676)
||++++||||||++++|||++.+ ..+++. +++|++|++.++++|+..+++||+++++|++.|+++|.++|
T Consensus 227 m~~~ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~ 306 (545)
T 1a6d_A 227 MPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEG 306 (545)
T ss_dssp SCSEEEEEEEEEECSCBSCCCCSSCCEEEECSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHHHT
T ss_pred CCCEECCCEEEEEECCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCC
T ss_conf 85640588799991677755346784399678999999999999999999999997299899987886689999999879
Q ss_pred CEEEECCCHHHHHHHHHHHCCCEECCCC-CCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEE
Q ss_conf 8686069978999999995994611356-899973124229999931234454479988982599999479996589997
Q 000317 417 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLL 495 (1676)
Q Consensus 417 Itvv~nVK~~~LeRIAR~TGA~IisSid-L~~~~LG~C~~f~v~~f~~~~~~~~~~~k~~~Ktliffegc~~~lgcTILL 495 (1676)
|++++++++.+|+|||++|||.|+++++ ++...||+|+.|++.+++. ++|+||+||+.+..|||+|
T Consensus 307 I~av~~~~k~~le~ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~ig~-------------~~~~~~~g~~~~~~~TI~l 373 (545)
T 1a6d_A 307 IYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGD-------------DRMTFVMGCKNPKAVSILI 373 (545)
T ss_dssp CEEECSCCHHHHHHHHHHHCCCEESSGGGCCGGGCEEEEEEEEEEETT-------------EEEEEEEEESCSSCEEEEE
T ss_pred EEEECCCCHHHHHHHHHHHCCEEECCCCCCCHHHCCCCEEEEEEEECC-------------CEEEEEECCCCCCEEEEEE
T ss_conf 267524899999999998599254660329987778862899999558-------------3499996688874589997
Q ss_pred ECCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 079998999999999999999999764290750697012368
Q 000317 496 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 537 (1676)
Q Consensus 496 RG~s~~~L~evKrvl~dai~vv~~l~lE~s~l~ggGa~~~~~ 537 (1676)
||+++.+|+|+||+++||++++++++.+.++|+||||++...
T Consensus 374 rG~te~~l~E~kr~l~DAl~~~r~a~~~g~iVpGGGa~e~~~ 415 (545)
T 1a6d_A 374 RGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAEL 415 (545)
T ss_dssp CCSSSTTHHHHHHHHHHHHHHHHHHHHHCEEEETTTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHH
T ss_conf 689889999999999999999999986898886857999999
No 10
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=1.00 E-value=1 Score=376.99 Aligned_cols=253 Identities=19% Similarity=0.265 Sum_probs=236.2
Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCC
Q ss_conf 99999864345789870259999999999998602789889986692357069981289978732698489920467899
Q 000317 267 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 346 (1676)
Q Consensus 267 l~qLL~~a~isl~sK~~~~w~d~ls~L~veAv~~V~pd~~~gd~mDi~~yVKIKkI~GGs~~dS~vI~GVV~~Knvahk~ 346 (1676)
...|++.+.+++++|....|.++|++++++|+..|.+. +..+|+ ++|+|+|++||+..||++++|++|+|...|+.
T Consensus 137 ~~~L~~va~tsl~sKi~~~~~d~la~l~vdaV~~V~~~---~~~~dl-~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~p~ 212 (517)
T 3iyg_Z 137 RETLIDVARTSLRTKVHAELADVLTEAVVDSILAIKKQ---DEPIDL-FMVEIMEMKHKSETDTSLIRGLVLDHGARHPD 212 (517)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEECCC---CCCCCH-HHHEEEEECCCCCCCCCEEEEEEEECCCCCCC
T ss_conf 89999999987045542047889999999886033147---876773-57136651488732000575479832577877
Q ss_pred CCCCCCCCCEEEEEEECCCCCCC------C---CCHHH-HHHHHHHHHHHHHHHHCCCCE---------EEEECCCCCHH
Q ss_conf 98522698489994304646656------6---61877-999999999999667207981---------99954663299
Q 000317 347 MPTEYKNPRLLLIRGVLGLSSSG------L---SSFKA-MEQEKDQLKSVMDMIDMCHPN---------VVLVEKTVSRD 407 (1676)
Q Consensus 347 Mp~~i~nPRILLL~~~LEy~r~~------l---~Sle~-i~QE~eyL~~lV~rI~~~~pn---------VVLveksVs~~ 407 (1676)
||++++||+||+++++|||++.+ + .+++. +++|++|++..+++|+.++++ ||+++++|+++
T Consensus 213 m~~~ien~kIll~~~~le~~k~e~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~I~~~~~~v~~~~~~~lvIi~~~~I~d~ 292 (517)
T 3iyg_Z 213 MKKRVEDAYILTCNVSLEYEKTEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPF 292 (517)
T ss_pred CCCCCCCCEEEEECCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH
T ss_conf 64322387499953665555444541699689999999999999999999999998505554125786389735667879
Q ss_pred HHHHHHHCCCEEEECCCHHHHHHHHHHHCCCEECCCC-CCCCC-CCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 9999998498686069978999999995994611356-89997-312422999993123445447998898259999947
Q 000317 408 IQESILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQK-LKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGC 485 (1676)
Q Consensus 408 Al~~L~~~gItvv~nVK~~~LeRIAR~TGA~IisSid-L~~~~-LG~C~~f~v~~f~~~~~~~~~~~k~~~Ktliffegc 485 (1676)
|++||.++||++++++++.+|+|||++|||.|+++++ ++... ||+|+ |++++++. ++++||+||
T Consensus 293 al~~L~~~gI~~v~~v~~~~leria~~tGa~iv~~l~~l~~~~~LG~a~-v~e~~ig~-------------~~~~~~~g~ 358 (517)
T 3iyg_Z 293 SLDALAKEGIIALRRAKRRNMERLTLACGGIALNSLDDLNPDCLLGHAG-VYEYTLGE-------------EKFTFIEKC 358 (517)
T ss_pred HHHHHHHCCCEEEEECCHHHHHHHHHHHCCEEECCHHHCCCCCCCCCCE-EEEEEECC-------------CEEEEEECC
T ss_conf 9999998798799825799999999986997854534275000477514-99999768-------------258999478
Q ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 9996589997079998999999999999999999764290750697012368
Q 000317 486 PTRLGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 537 (1676)
Q Consensus 486 ~~~lgcTILLRG~s~~~L~evKrvl~dai~vv~~l~lE~s~l~ggGa~~~~~ 537 (1676)
+.+.+|||+|||+|+.+|+|+||+++||++++++++.++++++||||++...
T Consensus 359 ~~~~~~TI~lrG~t~~~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~ 410 (517)
T 3iyg_Z 359 NNPRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAM 410 (517)
T ss_pred CCCHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHHHH
T ss_conf 9833443431488678999999999988999999973661854862899999
Done!