Query 000318
Match_columns 1675
No_of_seqs 288 out of 465
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 04:09:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000318.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000318hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1525 Sister chromatid cohes 100.0 2E-137 3E-142 1336.7 82.4 1066 10-1101 6-1119(1266)
2 KOG1525 Sister chromatid cohes 99.7 9.3E-14 2E-18 184.2 50.4 490 640-1249 583-1087(1266)
3 PF09465 LBR_tudor: Lamin-B re 99.0 1.3E-09 2.8E-14 95.3 6.4 43 1376-1418 7-49 (55)
4 PTZ00429 beta-adaptin; Provisi 98.7 9.1E-05 2E-09 97.2 39.8 392 269-755 39-437 (746)
5 KOG2171 Karyopherin (importin) 98.6 0.00052 1.1E-08 90.7 41.9 529 244-855 23-595 (1075)
6 PTZ00429 beta-adaptin; Provisi 98.2 0.0032 6.9E-08 83.1 37.2 122 246-373 89-210 (746)
7 PF01602 Adaptin_N: Adaptin N 97.9 0.0022 4.8E-08 81.5 27.9 117 245-369 62-179 (526)
8 KOG1020 Sister chromatid cohes 97.9 0.27 5.8E-06 67.4 56.2 340 60-411 587-962 (1692)
9 KOG1824 TATA-binding protein-i 97.8 0.31 6.8E-06 64.1 47.8 382 21-434 24-484 (1233)
10 KOG1020 Sister chromatid cohes 97.5 0.22 4.8E-06 68.2 36.6 135 297-443 810-945 (1692)
11 PRK09687 putative lyase; Provi 97.5 0.00064 1.4E-08 80.4 12.0 145 246-407 41-186 (280)
12 PF01602 Adaptin_N: Adaptin N 97.4 0.13 2.8E-06 65.6 32.5 239 244-533 133-374 (526)
13 KOG1062 Vesicle coat complex A 97.3 0.21 4.4E-06 64.9 31.2 353 260-714 105-469 (866)
14 PRK09687 putative lyase; Provi 97.3 0.0016 3.5E-08 77.0 12.4 129 262-407 90-219 (280)
15 KOG1060 Vesicle coat complex A 97.2 0.2 4.4E-06 64.7 28.8 130 271-410 44-173 (968)
16 KOG0414 Chromosome condensatio 97.0 2.8 6.1E-05 57.0 57.3 437 245-732 295-797 (1251)
17 PRK13800 putative oxidoreducta 97.0 0.058 1.3E-06 73.7 24.2 262 63-405 628-895 (897)
18 smart00333 TUDOR Tudor domain. 97.0 0.0014 2.9E-08 58.7 5.9 44 1376-1421 4-48 (57)
19 KOG2023 Nuclear transport rece 96.9 2 4.3E-05 55.2 32.9 174 167-371 105-285 (885)
20 PF12717 Cnd1: non-SMC mitotic 96.8 0.039 8.5E-07 61.1 16.6 94 316-411 1-94 (178)
21 cd04508 TUDOR Tudor domains ar 96.8 0.0029 6.3E-08 54.6 5.7 43 1378-1421 1-44 (48)
22 KOG0212 Uncharacterized conser 96.7 2.7 5.8E-05 53.3 32.4 431 207-671 26-509 (675)
23 smart00743 Agenet Tudor-like d 96.7 0.0035 7.5E-08 57.2 6.0 36 1376-1412 4-39 (61)
24 KOG2025 Chromosome condensatio 96.7 2 4.4E-05 55.5 31.3 125 271-406 94-219 (892)
25 KOG1824 TATA-binding protein-i 96.6 2.3 5.1E-05 56.5 31.7 542 204-768 454-1053(1233)
26 PF13646 HEAT_2: HEAT repeats; 96.5 0.015 3.3E-07 55.8 9.2 83 308-405 4-88 (88)
27 PLN03200 cellulose synthase-in 96.4 6 0.00013 57.9 36.9 374 315-752 416-812 (2102)
28 KOG2023 Nuclear transport rece 96.4 0.25 5.4E-06 62.9 20.8 369 245-651 378-789 (885)
29 PRK13800 putative oxidoreducta 96.4 0.017 3.7E-07 78.7 12.2 120 263-407 622-741 (897)
30 KOG1060 Vesicle coat complex A 96.2 6.4 0.00014 51.8 32.3 181 224-414 69-251 (968)
31 KOG1949 Uncharacterized conser 96.1 0.28 6.1E-06 62.6 19.3 100 266-369 224-329 (1005)
32 PF10508 Proteasom_PSMB: Prote 96.1 0.51 1.1E-05 60.7 22.6 241 165-410 91-367 (503)
33 PF10508 Proteasom_PSMB: Prote 96.0 2.9 6.3E-05 53.9 28.8 131 263-394 120-257 (503)
34 KOG1242 Protein containing ada 96.0 1.6 3.5E-05 55.9 25.6 231 302-582 215-449 (569)
35 PF14500 MMS19_N: Dos2-interac 95.9 0.55 1.2E-05 55.4 19.9 231 63-308 6-255 (262)
36 PF12348 CLASP_N: CLASP N term 95.7 0.094 2E-06 59.7 12.4 146 264-412 55-209 (228)
37 KOG2171 Karyopherin (importin) 95.6 15 0.00033 50.4 69.4 312 62-411 86-420 (1075)
38 KOG4675 Uncharacterized conser 95.6 0.012 2.6E-07 67.9 4.4 66 1368-1433 152-225 (273)
39 COG5218 YCG1 Chromosome conden 95.2 11 0.00023 48.4 27.5 256 270-558 99-371 (885)
40 PF13646 HEAT_2: HEAT repeats; 95.1 0.067 1.5E-06 51.3 7.3 86 264-367 1-88 (88)
41 KOG2011 Sister chromatid cohes 94.8 0.41 8.8E-06 64.7 15.4 125 307-442 291-421 (1048)
42 KOG0213 Splicing factor 3b, su 94.7 7 0.00015 51.0 24.7 298 63-409 560-954 (1172)
43 KOG1248 Uncharacterized conser 94.4 31 0.00067 47.8 51.3 145 121-266 282-433 (1176)
44 PF12460 MMS19_C: RNAPII trans 94.4 9.4 0.0002 48.1 25.7 299 69-379 56-402 (415)
45 PF09038 53-BP1_Tudor: Tumour 94.4 0.07 1.5E-06 55.0 5.6 46 1373-1419 1-46 (122)
46 PF12348 CLASP_N: CLASP N term 94.3 0.97 2.1E-05 51.5 15.5 98 269-371 101-206 (228)
47 KOG1949 Uncharacterized conser 94.3 4.9 0.00011 52.1 22.1 188 265-462 177-377 (1005)
48 KOG1061 Vesicle coat complex A 94.2 8.5 0.00018 50.8 24.6 375 262-675 13-416 (734)
49 COG5096 Vesicle coat complex, 94.2 13 0.00028 49.8 26.7 129 271-410 28-157 (757)
50 PF12719 Cnd3: Nuclear condens 93.7 0.64 1.4E-05 55.7 13.0 97 271-371 36-143 (298)
51 cd00020 ARM Armadillo/beta-cat 93.4 0.097 2.1E-06 52.3 4.7 106 263-368 8-117 (120)
52 KOG0414 Chromosome condensatio 93.4 1.2 2.6E-05 60.3 15.6 151 244-400 896-1055(1251)
53 COG5240 SEC21 Vesicle coat com 93.4 6.8 0.00015 49.8 20.8 303 79-406 44-366 (898)
54 PF12755 Vac14_Fab1_bd: Vacuol 93.1 0.24 5.1E-06 49.9 6.7 66 341-407 26-94 (97)
55 KOG0915 Uncharacterized conser 93.0 59 0.0013 46.3 31.3 310 76-411 790-1162(1702)
56 PF12717 Cnd1: non-SMC mitotic 93.0 0.85 1.8E-05 50.6 11.6 86 247-335 10-96 (178)
57 COG5098 Chromosome condensatio 93.0 7.9 0.00017 50.2 20.7 134 245-411 282-417 (1128)
58 COG5240 SEC21 Vesicle coat com 92.4 42 0.00092 43.2 28.3 51 624-674 319-369 (898)
59 COG5098 Chromosome condensatio 92.4 2.3 4.9E-05 54.8 15.0 110 251-361 335-464 (1128)
60 COG5096 Vesicle coat complex, 91.8 20 0.00043 48.2 23.3 103 304-410 93-196 (757)
61 PF02985 HEAT: HEAT repeat; I 91.3 0.3 6.4E-06 38.7 3.9 29 343-371 1-29 (31)
62 PLN03200 cellulose synthase-in 90.9 1.2E+02 0.0026 45.4 34.8 141 265-409 407-559 (2102)
63 PF12719 Cnd3: Nuclear condens 90.7 10 0.00022 45.5 18.1 126 283-410 4-144 (298)
64 KOG0413 Uncharacterized conser 90.6 81 0.0018 43.0 33.6 100 265-368 437-536 (1529)
65 KOG1078 Vesicle coat complex C 90.6 7.8 0.00017 51.1 17.4 259 62-365 251-526 (865)
66 PF01347 Vitellogenin_N: Lipop 90.2 3.7 8E-05 54.0 15.0 128 256-404 480-617 (618)
67 PF06003 SMN: Survival motor n 90.1 0.51 1.1E-05 55.7 6.3 48 1374-1421 68-116 (264)
68 PF13513 HEAT_EZ: HEAT-like re 90.0 0.19 4.1E-06 44.6 2.1 52 317-368 1-54 (55)
69 PF05804 KAP: Kinesin-associat 89.5 15 0.00032 49.3 19.4 177 644-831 289-478 (708)
70 KOG1062 Vesicle coat complex A 89.4 13 0.00028 49.3 18.1 165 167-371 220-414 (866)
71 PF10363 DUF2435: Protein of u 89.2 2.7 5.8E-05 42.1 9.6 87 302-392 2-89 (92)
72 KOG0915 Uncharacterized conser 89.2 31 0.00067 48.8 22.0 324 54-393 1035-1457(1702)
73 KOG2025 Chromosome condensatio 88.8 96 0.0021 41.2 28.8 56 141-197 75-131 (892)
74 PF13001 Ecm29: Proteasome sta 88.8 16 0.00034 47.3 18.7 129 253-384 361-499 (501)
75 cd00020 ARM Armadillo/beta-cat 88.8 0.63 1.4E-05 46.5 5.1 99 309-407 13-118 (120)
76 KOG2259 Uncharacterized conser 88.5 0.81 1.8E-05 58.6 6.6 97 306-406 376-472 (823)
77 PF13513 HEAT_EZ: HEAT-like re 87.6 0.47 1E-05 42.0 2.9 52 356-407 1-55 (55)
78 KOG2259 Uncharacterized conser 87.6 3.4 7.4E-05 53.2 11.1 111 297-410 192-311 (823)
79 PF12755 Vac14_Fab1_bd: Vacuol 87.4 1.1 2.4E-05 45.1 5.7 84 279-362 3-88 (97)
80 KOG1059 Vesicle coat complex A 87.2 1.2E+02 0.0026 40.5 35.9 114 254-375 101-214 (877)
81 PF12765 Cohesin_HEAT: HEAT re 87.0 0.77 1.7E-05 39.2 3.6 39 327-365 3-41 (42)
82 TIGR02270 conserved hypothetic 85.2 5.4 0.00012 50.2 11.3 54 346-406 151-204 (410)
83 KOG2011 Sister chromatid cohes 85.0 12 0.00025 51.5 14.7 164 204-412 264-439 (1048)
84 smart00638 LPD_N Lipoprotein N 84.1 1.3E+02 0.0028 39.6 23.8 143 204-363 420-570 (574)
85 KOG2956 CLIP-associating prote 84.0 8.4 0.00018 48.3 11.8 172 252-435 322-498 (516)
86 KOG1058 Vesicle coat complex C 83.9 22 0.00048 46.9 15.7 255 64-368 142-422 (948)
87 PF12074 DUF3554: Domain of un 82.9 45 0.00098 40.8 17.8 204 147-355 19-257 (339)
88 smart00638 LPD_N Lipoprotein N 81.8 42 0.0009 44.1 18.0 144 254-407 389-543 (574)
89 KOG1943 Beta-tubulin folding c 81.8 2.4E+02 0.0052 39.4 31.3 180 204-413 514-709 (1133)
90 TIGR02270 conserved hypothetic 81.5 15 0.00032 46.4 13.1 135 244-409 42-176 (410)
91 PF12231 Rif1_N: Rap1-interact 81.2 1.6E+02 0.0034 36.9 26.2 321 66-411 3-354 (372)
92 COG5181 HSH155 U2 snRNP splice 80.4 86 0.0019 40.9 18.6 303 53-367 599-943 (975)
93 KOG1820 Microtubule-associated 80.2 15 0.00032 49.9 13.0 150 258-411 249-402 (815)
94 COG1413 FOG: HEAT repeat [Ener 79.7 12 0.00026 45.3 11.2 135 249-409 95-242 (335)
95 KOG1967 DNA repair/transcripti 78.9 9.2 0.0002 51.2 10.2 149 261-409 866-1024(1030)
96 KOG0392 SNF2 family DNA-depend 77.7 12 0.00026 51.7 10.8 137 241-382 792-944 (1549)
97 KOG0368 Acetyl-CoA carboxylase 76.2 1.2E+02 0.0025 43.5 19.0 220 107-344 768-1022(2196)
98 COG1413 FOG: HEAT repeat [Ener 75.3 17 0.00037 43.9 10.9 128 263-410 75-210 (335)
99 KOG1058 Vesicle coat complex C 75.2 3.1E+02 0.0067 37.1 30.1 144 256-411 14-165 (948)
100 KOG0413 Uncharacterized conser 74.3 40 0.00086 45.7 13.8 131 275-410 944-1074(1529)
101 KOG1991 Nuclear transport rece 73.9 3.7E+02 0.008 37.4 44.1 296 164-478 102-495 (1010)
102 KOG1243 Protein kinase [Genera 73.8 10 0.00022 49.8 8.5 108 301-408 327-436 (690)
103 KOG1992 Nuclear export recepto 72.7 1E+02 0.0022 41.7 16.8 117 113-234 603-734 (960)
104 KOG1820 Microtubule-associated 72.6 35 0.00076 46.5 13.4 146 263-412 296-446 (815)
105 PF11864 DUF3384: Domain of un 72.3 3E+02 0.0064 35.5 21.5 166 116-291 147-330 (464)
106 KOG1240 Protein kinase contain 71.7 31 0.00068 47.8 12.4 156 242-398 440-635 (1431)
107 KOG2213 Apoptosis inhibitor 5/ 71.6 1E+02 0.0022 38.5 15.5 228 300-568 22-277 (460)
108 PF14676 FANCI_S2: FANCI solen 71.4 4.5 9.8E-05 44.4 4.1 120 246-368 39-158 (158)
109 PF04826 Arm_2: Armadillo-like 70.4 1.4E+02 0.003 35.5 16.3 106 258-363 130-254 (254)
110 KOG0166 Karyopherin (importin) 69.1 13 0.00028 47.7 7.9 141 262-406 152-305 (514)
111 KOG1967 DNA repair/transcripti 68.5 1.6E+02 0.0035 40.3 17.5 140 225-365 862-1018(1030)
112 PF12765 Cohesin_HEAT: HEAT re 68.5 6.2 0.00013 33.8 3.5 39 366-404 3-42 (42)
113 COG5537 IRR1 Cohesin [Cell div 67.8 7.6 0.00016 49.8 5.4 104 302-409 273-386 (740)
114 COG5181 HSH155 U2 snRNP splice 67.1 2.7E+02 0.0059 36.7 18.3 258 147-410 396-718 (975)
115 PF02985 HEAT: HEAT repeat; I 67.1 10 0.00022 30.0 4.2 29 382-410 2-30 (31)
116 PF05641 Agenet: Agenet domain 66.2 10 0.00022 35.7 4.8 35 1377-1412 3-40 (68)
117 KOG1059 Vesicle coat complex A 65.8 68 0.0015 42.6 13.1 164 244-408 163-364 (877)
118 KOG2051 Nonsense-mediated mRNA 65.5 40 0.00087 46.2 11.5 92 245-337 481-579 (1128)
119 PF10363 DUF2435: Protein of u 64.4 21 0.00046 35.8 6.9 83 268-356 9-91 (92)
120 KOG1240 Protein kinase contain 64.3 4.8E+02 0.01 37.2 20.8 131 276-411 592-727 (1431)
121 PF14911 MMS22L_C: S-phase gen 63.7 67 0.0015 40.1 12.4 183 96-287 139-370 (373)
122 PF01347 Vitellogenin_N: Lipop 63.0 75 0.0016 42.0 13.7 219 151-406 348-586 (618)
123 PF05004 IFRD: Interferon-rela 62.7 1.7E+02 0.0037 35.7 15.5 67 648-714 46-114 (309)
124 PF08167 RIX1: rRNA processing 62.4 56 0.0012 36.1 10.4 138 602-771 19-163 (165)
125 PF03378 CAS_CSE1: CAS/CSE pro 61.6 80 0.0017 40.4 12.9 191 74-293 44-255 (435)
126 PF05004 IFRD: Interferon-rela 60.7 1.5E+02 0.0032 36.2 14.6 150 263-412 87-260 (309)
127 KOG0212 Uncharacterized conser 59.8 5.3E+02 0.012 34.0 36.1 283 118-411 12-326 (675)
128 PF05327 RRN3: RNA polymerase 59.5 74 0.0016 42.0 12.5 188 102-323 31-221 (563)
129 PF00567 TUDOR: Tudor domain; 58.9 20 0.00044 35.9 5.9 53 1373-1428 50-103 (121)
130 KOG2038 CAATT-binding transcri 58.8 6.3E+02 0.014 34.5 21.8 67 343-410 305-371 (988)
131 PF15057 DUF4537: Domain of un 58.7 19 0.00041 38.1 5.7 41 1378-1419 1-41 (124)
132 PF08569 Mo25: Mo25-like; Int 58.1 4.5E+02 0.0098 32.6 18.3 87 267-354 214-313 (335)
133 KOG3026 Splicing factor SPF30 57.6 15 0.00033 42.2 5.0 36 1375-1410 91-126 (262)
134 PF13251 DUF4042: Domain of un 57.3 1.1E+02 0.0023 34.8 11.5 130 278-410 2-175 (182)
135 PF11717 Tudor-knot: RNA bindi 56.7 26 0.00057 31.7 5.5 43 1377-1420 3-50 (55)
136 KOG0644 Uncharacterized conser 56.5 12 0.00026 49.5 4.5 46 1374-1419 978-1035(1113)
137 PF05804 KAP: Kinesin-associat 54.0 7.5E+02 0.016 33.9 20.8 163 545-714 464-648 (708)
138 KOG1517 Guanine nucleotide bin 53.9 3.1E+02 0.0066 38.4 16.2 137 256-412 597-735 (1387)
139 PF05918 API5: Apoptosis inhib 53.9 1.4E+02 0.0031 39.2 13.3 83 274-363 34-116 (556)
140 COG5215 KAP95 Karyopherin (imp 53.9 6.6E+02 0.014 33.2 19.7 333 6-369 384-761 (858)
141 COG5218 YCG1 Chromosome conden 53.7 6.7E+02 0.015 33.3 25.4 196 122-370 66-265 (885)
142 KOG4413 26S proteasome regulat 53.2 94 0.002 37.8 10.6 48 244-291 190-243 (524)
143 KOG2393 Transcription initiati 52.4 31 0.00068 44.1 7.0 24 1569-1593 292-315 (555)
144 KOG0211 Protein phosphatase 2A 50.7 49 0.0011 44.8 8.9 135 274-411 210-347 (759)
145 PF05918 API5: Apoptosis inhib 50.7 7.4E+02 0.016 32.9 24.9 108 644-756 19-130 (556)
146 PF12530 DUF3730: Protein of u 50.7 4.2E+02 0.0092 30.9 15.6 129 625-756 55-190 (234)
147 PF12830 Nipped-B_C: Sister ch 49.5 65 0.0014 36.3 8.4 70 341-411 7-76 (187)
148 KOG1241 Karyopherin (importin) 49.0 8.7E+02 0.019 33.2 30.2 157 254-411 355-532 (859)
149 PF14500 MMS19_N: Dos2-interac 47.8 5.6E+02 0.012 30.6 23.1 64 345-410 2-70 (262)
150 PF04118 Dopey_N: Dopey, N-ter 47.7 1.4E+02 0.003 36.5 11.3 107 251-368 131-251 (307)
151 KOG2933 Uncharacterized conser 47.1 1.1E+02 0.0023 37.4 9.8 162 244-410 107-278 (334)
152 COG5537 IRR1 Cohesin [Cell div 45.7 1.1E+02 0.0024 40.0 10.2 130 272-412 285-428 (740)
153 PF12530 DUF3730: Protein of u 45.5 5.6E+02 0.012 29.9 16.3 71 248-325 107-178 (234)
154 PF13251 DUF4042: Domain of un 45.5 1.2E+02 0.0027 34.2 9.7 98 271-371 49-174 (182)
155 PLN00104 MYST -like histone ac 44.2 1.2E+02 0.0026 38.7 10.3 45 1375-1419 54-107 (450)
156 KOG1832 HIV-1 Vpr-binding prot 43.6 13 0.00029 49.3 2.1 23 842-864 752-774 (1516)
157 KOG0166 Karyopherin (importin) 42.3 1.7E+02 0.0037 38.1 11.3 169 266-441 70-251 (514)
158 KOG2062 26S proteasome regulat 42.3 1.1E+02 0.0024 40.9 9.6 97 268-377 493-590 (929)
159 KOG1832 HIV-1 Vpr-binding prot 39.6 17 0.00037 48.4 2.1 22 1179-1200 1123-1144(1516)
160 COG5219 Uncharacterized conser 39.4 3.9E+02 0.0085 36.9 13.8 194 98-328 1036-1263(1525)
161 cd00256 VATPase_H VATPase_H, r 39.2 9.6E+02 0.021 30.9 20.3 64 67-134 65-132 (429)
162 KOG2160 Armadillo/beta-catenin 38.8 3.2E+02 0.007 33.9 12.4 96 270-370 132-239 (342)
163 KOG1991 Nuclear transport rece 38.6 1.3E+03 0.029 32.4 26.7 113 248-363 445-568 (1010)
164 PLN03076 ARF guanine nucleotid 38.4 1.8E+03 0.038 33.8 31.7 157 48-218 1083-1257(1780)
165 KOG0567 HEAT repeat-containing 37.3 7.5E+02 0.016 29.9 14.4 147 245-412 53-252 (289)
166 KOG0943 Predicted ubiquitin-pr 36.6 72 0.0016 44.0 6.8 15 957-971 1214-1228(3015)
167 KOG0211 Protein phosphatase 2A 36.3 1.4E+03 0.029 31.8 26.4 141 261-403 275-421 (759)
168 KOG1077 Vesicle coat complex A 35.9 1.3E+02 0.0029 39.9 8.9 120 246-370 307-432 (938)
169 KOG2153 Protein involved in th 35.9 92 0.002 41.0 7.5 54 320-373 302-355 (704)
170 KOG2032 Uncharacterized conser 35.2 7.9E+02 0.017 32.0 15.1 251 270-532 188-455 (533)
171 PF12074 DUF3554: Domain of un 34.7 1.8E+02 0.004 35.5 9.9 87 319-409 3-90 (339)
172 KOG1243 Protein kinase [Genera 34.6 3.1E+02 0.0068 36.7 12.0 148 256-405 324-472 (690)
173 KOG2213 Apoptosis inhibitor 5/ 34.5 1.1E+03 0.023 30.1 28.1 90 445-544 237-334 (460)
174 COG5064 SRP1 Karyopherin (impo 34.3 2.8E+02 0.0061 34.2 10.6 137 264-407 73-251 (526)
175 KOG4413 26S proteasome regulat 33.4 2.7E+02 0.0059 34.1 10.3 123 281-410 62-201 (524)
176 KOG0168 Putative ubiquitin fus 33.4 8E+02 0.017 34.0 15.2 183 593-778 243-440 (1051)
177 PF06972 DUF1296: Protein of u 32.9 83 0.0018 29.3 4.7 36 322-361 7-42 (60)
178 PF04826 Arm_2: Armadillo-like 32.9 1.8E+02 0.0038 34.7 8.9 135 273-407 24-161 (254)
179 KOG2050 Puf family RNA-binding 32.8 7.2E+02 0.016 33.0 14.4 123 399-550 246-376 (652)
180 cd03568 VHS_STAM VHS domain fa 32.8 1.2E+02 0.0027 32.9 7.0 71 603-677 36-113 (144)
181 KOG2956 CLIP-associating prote 32.4 8.5E+02 0.018 31.6 14.6 162 165-331 302-476 (516)
182 PF14664 RICTOR_N: Rapamycin-i 31.5 1.4E+02 0.003 37.5 8.1 112 263-376 26-142 (371)
183 PF11707 Npa1: Ribosome 60S bi 31.0 1.9E+02 0.004 35.6 9.0 132 254-409 48-214 (330)
184 KOG0168 Putative ubiquitin fus 30.9 1.3E+03 0.029 32.0 16.6 40 51-90 329-369 (1051)
185 PF08324 PUL: PUL domain; Int 30.7 2E+02 0.0044 33.8 9.1 97 274-370 122-230 (268)
186 KOG1242 Protein containing ada 30.2 1.5E+03 0.032 30.3 33.2 185 249-442 42-231 (569)
187 PF08506 Cse1: Cse1; InterPro 29.6 1E+03 0.022 29.9 15.2 223 509-747 102-369 (370)
188 KOG2160 Armadillo/beta-catenin 29.3 3.7E+02 0.008 33.4 10.8 145 264-411 85-242 (342)
189 COG5116 RPN2 26S proteasome re 29.1 95 0.0021 40.2 6.0 63 312-377 525-587 (926)
190 PF11919 DUF3437: Domain of un 28.8 1.3E+02 0.0027 30.4 5.7 57 355-412 2-61 (90)
191 KOG0162 Myosin class I heavy c 28.2 4.3E+02 0.0094 35.6 11.4 218 163-413 455-711 (1106)
192 PF08605 Rad9_Rad53_bind: Fung 27.4 1E+02 0.0023 33.0 5.2 49 1388-1439 21-69 (131)
193 PF13764 E3_UbLigase_R4: E3 ub 27.1 1.3E+03 0.028 32.1 16.4 164 12-198 44-235 (802)
194 PF00514 Arm: Armadillo/beta-c 27.1 95 0.0021 25.9 4.0 29 342-370 12-40 (41)
195 cd03561 VHS VHS domain family; 25.8 5E+02 0.011 27.6 10.1 81 329-411 26-114 (133)
196 PF08569 Mo25: Mo25-like; Int 25.7 1.4E+03 0.03 28.5 15.1 167 230-410 50-239 (335)
197 KOG3723 PH domain protein Melt 25.4 1.7E+03 0.037 29.5 18.4 49 245-294 182-230 (851)
198 PF02237 BPL_C: Biotin protein 25.3 1.7E+02 0.0037 25.7 5.3 39 1377-1418 2-40 (48)
199 PF14911 MMS22L_C: S-phase gen 25.1 6.7E+02 0.014 31.7 12.2 123 18-160 223-347 (373)
200 KOG4224 Armadillo repeat prote 24.7 9.5E+02 0.021 30.2 12.8 146 261-409 207-363 (550)
201 KOG1293 Proteins containing ar 24.6 4.2E+02 0.009 35.4 10.5 172 266-449 335-524 (678)
202 KOG3064 RNA-binding nuclear pr 24.5 26 0.00056 40.9 0.1 18 1607-1624 244-261 (303)
203 cd06561 AlkD_like A new struct 24.0 2.9E+02 0.0063 30.6 8.4 77 317-401 120-196 (197)
204 PF08767 CRM1_C: CRM1 C termin 23.9 4.1E+02 0.009 32.6 10.2 126 167-292 43-195 (319)
205 PF14664 RICTOR_N: Rapamycin-i 23.8 1.1E+03 0.025 29.6 14.1 196 204-410 44-270 (371)
206 PF12830 Nipped-B_C: Sister ch 23.3 5.3E+02 0.012 29.0 10.2 66 303-373 8-76 (187)
207 cd03568 VHS_STAM VHS domain fa 23.1 5.5E+02 0.012 28.0 9.8 74 338-411 33-112 (144)
208 cd00280 TRFH Telomeric Repeat 22.9 6.9E+02 0.015 28.7 10.5 103 47-157 30-139 (200)
209 PF10266 Strumpellin: Heredita 21.9 2.6E+03 0.056 30.4 18.2 19 384-402 338-356 (1081)
210 cd03569 VHS_Hrs_Vps27p VHS dom 21.6 2.7E+02 0.0058 30.2 7.1 71 603-677 40-117 (142)
211 KOG0946 ER-Golgi vesicle-tethe 21.6 4E+02 0.0087 36.3 9.6 91 243-373 107-197 (970)
212 KOG2759 Vacuolar H+-ATPase V1 20.9 1.9E+03 0.04 28.3 20.1 105 63-181 72-187 (442)
213 KOG1061 Vesicle coat complex A 20.8 2.3E+03 0.05 29.4 27.8 147 222-375 45-193 (734)
214 PF12612 TFCD_C: Tubulin foldi 20.6 3.4E+02 0.0074 30.7 8.1 111 70-198 21-137 (193)
215 KOG1078 Vesicle coat complex C 20.6 2.4E+03 0.051 29.5 29.3 285 315-664 220-522 (865)
216 KOG2140 Uncharacterized conser 20.6 3.5E+02 0.0075 35.2 8.5 109 710-837 220-331 (739)
217 PF06685 DUF1186: Protein of u 20.3 1.3E+03 0.028 27.6 12.8 100 244-355 100-202 (249)
No 1
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.6e-137 Score=1336.67 Aligned_cols=1066 Identities=30% Similarity=0.466 Sum_probs=900.8
Q ss_pred HHHccccCCCCCCHHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhchhhhhcCCCcchhHHHHHHHHHHhhhcCC
Q 000318 10 KEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAP 89 (1675)
Q Consensus 10 ~~~g~kL~~~~~s~~eLlkrLk~L~~~Ls~~dQ~~~~~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~AP 89 (1675)
..-|-+....|++++||++||++|+.||++++|++ .+++++.|++.+|+++.||+|+|+|||+|||||++||||||||
T Consensus 6 ~~~g~~~~~~~~s~~ell~rLk~l~~~l~~~~qd~--~~~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aP 83 (1266)
T KOG1525|consen 6 YPPGCLTSLNPISKDELLKRLKKLANCLASLDQDN--LDLASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAP 83 (1266)
T ss_pred cCCCCccccCcccHHHHHHHHHHHHHHHhhcccCc--hhHHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCC
Confidence 34455666678999999999999999999999996 6899999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhheeccCCchHHHHHHHHHHHHhhcCCChhhHHH
Q 000318 90 EAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLS 169 (1675)
Q Consensus 90 dAPytd~qLkdIF~l~v~qf~~L~d~~~p~f~q~~~LLE~LA~vks~vl~~DL~~~~Li~~lF~~ff~~v~~~~~~~V~~ 169 (1675)
||||++.||+|||++|++||.||.|+.+|||.|||||||+||.||.|++|.|.+|++++.+||++||++++.+|+.+|.+
T Consensus 84 eaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~ 163 (1266)
T KOG1525|consen 84 EAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFN 163 (1266)
T ss_pred CCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHHHHH
Confidence 99999999999999999999999999999999999999999999955555555599999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCCC-CCCCCcchH
Q 000318 170 SMQTIMIVLLEESEDIQEDLLVILLSALGRNKN---DTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDS-RPGHSHIDY 245 (1675)
Q Consensus 170 ~m~~IL~~vI~Ese~vp~~vLd~IL~~l~~~~~---~~a~~lA~~v~~~~~dkL~~~I~qyf~~il~~~~-~~~~~~~~~ 245 (1675)
|.+||+.+|.|.+.||.++|++||.+|+.++. ..|+.||..+|+.|++.+++.|++||++.+.++. ..+....++
T Consensus 164 -~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~ 242 (1266)
T KOG1525|consen 164 -MLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKY 242 (1266)
T ss_pred -HHHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHH
Confidence 99999999999999999999999999976543 3999999999999999999999999999888764 455667789
Q ss_pred HHHHHHHHhhcchhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHH
Q 000318 246 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 325 (1675)
Q Consensus 246 h~Li~eL~~~~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve 325 (1675)
|++|++||+++|++|++|||||++||+++++.+|+.||.++|+||+.+++.++.+|+++|.+||+||+|++++||++||+
T Consensus 243 he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~ 322 (1266)
T KOG1525|consen 243 HELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVE 322 (1266)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHH
Q 000318 326 HVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLA 405 (1675)
Q Consensus 326 ~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~Vs~elL~~laeR~RDKK~~VRkeAm~~La 405 (1675)
++++||.+||+...+..+..+++.|+.|++++||..||.++|+++.+.+..++. +|+.|+||+||||+.||++||++|+
T Consensus 323 ~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~La 401 (1266)
T KOG1525|consen 323 SIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLA 401 (1266)
T ss_pred HhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 999999999998888899999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHH-HhhhccCCCcchhccccchHHHhhhhccCCCCc-hhHHHHhhccCcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 000318 406 DIFRG-CCLRNFNGSINQNEFEWIPGKILRCLYDKDFGS-DTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKAL 483 (1675)
Q Consensus 406 ~LY~~-~~~~~~~~~~~~~~~~wIP~~IL~~~Y~nd~~~-~lVE~vL~e~LlP~~~~~~~R~~~ll~l~~~LD~~~~kal 483 (1675)
++|+. ||..++++...+..|.|||++||++||.++.+. .+||++|+++|+|+++++++||++|+++|++||..+.++|
T Consensus 402 qlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~~D~~a~kaf 481 (1266)
T KOG1525|consen 402 QLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHLYQLLAGLDLNAHKAF 481 (1266)
T ss_pred HHHHHHHHhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcccHhhhhHH
Confidence 99996 566667777888999999999999999998764 4899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHhh--ccHHHHHHHHHHhcC
Q 000318 484 EKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQL--KDANVWKILMNLLDS 561 (1675)
Q Consensus 484 ~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kL~~~i~~Ls~~fPDp~Ka~e~L~kf~kl--nD~Ri~kLLk~~idp 561 (1675)
..|+++|.++|.+++.||.+++..+.++ ..+++...|..++..||||..+....++|++. .+..+..++..+..+
T Consensus 482 ~~i~~~q~~ls~~vr~~I~~~k~~~~d~---~~k~i~~~i~~i~~~lpD~~s~~~~~~~f~~~L~~~~~~~s~~~~L~~~ 558 (1266)
T KOG1525|consen 482 NEILKRQSRLSEEVRDYITLSKTPNTDD---SMKKIFSKIVKISENLPDPSSRSYDSMKFADVLETLAKVRSCLVSLDSP 558 (1266)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCccH---hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999988765433 77788888999999999999999999999763 467888999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcC----CCchHHHHHHHHHhhhccccCh-hHHHHHHHHHHhhcc-------cch--hhhHHH
Q 000318 562 NTSFDQAFTGRDDLLKILGA----KHRLYDFLSTLSMKCSYLLFNK-EHVKEILLEVAAQKS-------SAN--AQFMQS 627 (1675)
Q Consensus 562 ~td~~t~~~a~kELlkkL~~----~~~~~d~l~~Ll~R~S~li~Nk-s~V~~LL~~v~~~~~-------~~~--~~~~~~ 627 (1675)
..+|.++.-.+++++.+++. +..+..+.+.|+.|..++.+.. +.+..++........ .++ ......
T Consensus 559 ~~~C~~l~~~v~~~l~e~~~~~~s~nlF~~~~~~li~~I~~v~~di~~s~~~~ik~~~~~i~~~~~~l~e~v~~~~a~kl 638 (1266)
T KOG1525|consen 559 SISCKELLITVKEILFELGRKKQSKNLFSSMEKELIERIAEVSLDILESISALIKLNNIVIAEVSLLLLEGVLSEKALKL 638 (1266)
T ss_pred chhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHhcchhhhhHHHHHHHHhhhhhhHHHHHhhcccccchhhHHhH
Confidence 99998776556666666554 4457788888999999988887 777777765432211 111 122345
Q ss_pred HHHHHHHHHhhCCcCcccc--HHHHHHHHhhccccchHhHHHHHHHhhcchhhhhhcccchHHHHHHHHhhcCChHHHHH
Q 000318 628 CMDILGILARFSPLLLGGT--EEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKY 705 (1675)
Q Consensus 628 a~eLL~~IS~~~P~lFk~~--v~~Li~lL~~~~~~~~~~aLkiLak~~k~~~e~~~~~~s~l~~~L~~lal~GtpkqAKy 705 (1675)
...||.++|..+|.+|... +..++..+....+...+.+|+.+...|.......+...+.+...+.+++..|+|.|||+
T Consensus 639 ~~~lle~ls~~~~~~~~~s~~v~~i~~~~~~~~~~~~~~vLk~~~~~~~~~~~~~~si~~~~~~~~~~~~~~g~~~q~k~ 718 (1266)
T KOG1525|consen 639 KKYLLEALSSIHPDLFKYSESVLSILEKLFSEPDVVAPVVLKKLESQGKKIEVEAPSILSTLSRVLAKKELSGTPEQAKL 718 (1266)
T ss_pred HHHHHHHhhhcCcchhhhhHHHHHHHHHhccchhhhhHHHHHHHHhccccccccchhhhcchhhhhhHHHHcCCcchhHH
Confidence 6789999999999999876 36666666666666778899999888854444455566778999999999999999999
Q ss_pred HHHHHHhhcCCCccchHHHHHHHHHHhhhhc-----CCCchHHHHHHHHHhhccccccc-chHHHHHHHHHhhhcccCcc
Q 000318 706 AVHALAAITKDDGLKSLSVLYKRLVDMLEEK-----THLPAVLQSLGCIAQTAMPVFET-RESEIEEFIKSKILRCSNKI 779 (1675)
Q Consensus 706 Avr~Laa~~~~~~~~~~~~L~~~L~~~L~~~-----~~l~t~L~sLg~Iaq~aP~vfe~-~~~eI~~fIik~ILl~~~~~ 779 (1675)
|++|+.++...+.. .+.+++..+.+.+... .++.+.+.+||+|+.+.|..|.+ ....+..||+|+++..++.+
T Consensus 719 ~~~~i~~~~~s~~~-~l~q~~~~~~d~l~~~~~~~~e~~~~~i~~lgei~~~~p~~~~~~~k~~~~~~IvK~~~~~~~~~ 797 (1266)
T KOG1525|consen 719 AKRCIKAILQSKFC-KLKQTFEEIKDNLLEDLTSELEGLRTPIVTLGEIFLDLPSQFLDPLKSDVAKFIVKKVLSNDDSP 797 (1266)
T ss_pred HhhhhhHHhhhhhh-HHHHHhhhhHHHHhhhhhhhhhccccchhhhhhHhhhccHhhcchhhhhhHHHHHHHHhcCCCcc
Confidence 99999988876422 2345666677766433 49999999999999999966554 57889999999998888887
Q ss_pred CCC-CCCCCCCc----hhhHHHHHHHHHHHHHhhcCCCcccc--ccchHHHHHHHHHhh-ccCcCccCCCCChhhHhHhH
Q 000318 780 RND-TKACWDDR----SELCLLKIYGIKTLVKSYLPVKDAHI--RPGIDDLLGILKSML-SYGEMSEDIESSSVDKAHLR 851 (1675)
Q Consensus 780 ~~~-~~~~W~d~----s~~~~aKi~aLK~Lvn~ll~~~~~~~--~~~i~~ll~lL~~il-~~GEl~~~~~tp~~~ksrLR 851 (1675)
++. ....|++. +..+.+|+++++++++||++...+.- +-.+...+.+|..++ +.|++..+..+|..++++||
T Consensus 798 ~e~~~~~~~~P~~~~~~p~~~~k~~a~~L~~~~l~~~~~d~~~~e~s~~~~~~~L~~ll~~~gdl~~~~~~~~~~~sklr 877 (1266)
T KOG1525|consen 798 GEKNKSKEWLPSDKLLSPNTSLKVLAIKLLVRRLLDLEEDKEKDELSTPRSFRLLSKLLNSEGDLTEQNRDPKSDQSKLR 877 (1266)
T ss_pred ccccCccccCCcccccchhhhhHHHHHHHhhhhccccccCcchhhhcchhHHHHHHHHHhhcCCCCcccCCcchhhhhhh
Confidence 765 56778762 45688899999999999999976521 111112566777765 69999999999999999999
Q ss_pred HHHHHHHHHhhhc--cCCCCCHHHHHHHhhcccCCchhHHHHHHHHHHHhHhcCCCchhHHHHHHhhhcCCCCh--hhHH
Q 000318 852 LASAKAVLRLSRQ--WDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSP--EFEE 927 (1675)
Q Consensus 852 LaAa~sLLKLAr~--~d~~i~~d~f~l~~ll~qD~~~~VR~~Fl~KL~k~L~~~~Lp~kY~~lf~laa~a~ep~--e~e~ 927 (1675)
+.|+.++||||.. +..++.+++|..+.+.++|++++||..|+.||++++....+|.-||+.|.+++.+.... ..+.
T Consensus 878 ~~a~~~ilKl~~~~~~~e~~~~~~~~~~~~~i~de~~~vR~~f~~kl~k~l~~i~lp~~~~a~~~l~~~d~~~~~~~~~~ 957 (1266)
T KOG1525|consen 878 LTAKITILKLASEKSYHEFINAEQYEKLILLISDECLQVRLVFLLKLHKGLSRIKLPLEYMAKFKLCAPDVSKELLANKR 957 (1266)
T ss_pred hhhhheeeecccccchhccCCHHHHHHHHHHhcCCchhHHHHHHHHccccccccccchhhhhHHHHhccchhhhhhhHHH
Confidence 9999999999986 57889999999888889999999999999999999999999999999988854331110 0011
Q ss_pred HHHHHHHHHHHHHHhhhhhccccccccCCchhhhHHHHhHhcCCCCCCccchhcHHHHHHHHHHHHHHHHHhhccCcccc
Q 000318 928 NLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVK 1007 (1675)
Q Consensus 928 ~lk~~i~~~~~sr~r~~s~~s~a~~~~~~pEy~LprLIHLLAHH~~Pd~ee~~d~~~~~~~~~~L~F~L~~L~~~~~~~~ 1007 (1675)
....-...+++.+.....+.++. .....|||+.+|.+|++||| |+|...+++..|-.+..++||.++.|...+
T Consensus 958 ~~~t~~~~~~r~~t~~e~~~s~~-~~~~~~e~V~~~~~~~la~d--~~~~~~edv~~l~~~ke~~~~vl~~l~~~~---- 1030 (1266)
T KOG1525|consen 958 EEETKNSASRREQTKFERATSDG-TLAHLPEYVGSYVIHLLAHD--PDFVKAEDVDSLSDLKECLWFVLEDLDEEN---- 1030 (1266)
T ss_pred HhhhhcchhhhhhhhhhhccCch-hhhhhhHHhhhhhhhhhccC--ccccccchhhhHHHHHHhHHHHHhhhhhhh----
Confidence 11111111222222222222221 15688999999999999999 999998899999999999999999996432
Q ss_pred ccccccccH--HHHHHHHHHhhcccccccc---ccCcchHHHHHHHHHHHHHHhc-cCCCCcccccccCCCccccCCCCC
Q 000318 1008 SEASNKESI--SVIISIFRSIKCSEDIVDA---AKSKNSHAICDLGLSITKRLSR-MEDNSQGVFSSVSLPSTLYKPYEK 1081 (1675)
Q Consensus 1008 ~~~a~~eNi--SlLy~La~rIKq~rDa~d~---~~S~nlY~LcDLAq~IIk~~a~-k~w~lqsyPGkV~LPs~lF~p~~s 1081 (1675)
+|+ .+.-.+.+-+++.+|...+ ..+..||+|||+|+.|+..... .+|...+|||++.||..+|.+..+
T Consensus 1031 ------~n~~~~~~~~~~~~~~~~~d~~s~~d~~~~~kl~~l~d~a~~i~~sk~~~~s~~~tt~~~~~~lp~~~~~~~~~ 1104 (1266)
T KOG1525|consen 1031 ------ENNQHKFWKREKEEIKGSEDEESPDDVGDNIKLYTLCDLAQCIILSKSTKFSNSSTTSPGKLNLPALSFTSPKD 1104 (1266)
T ss_pred ------ccchhHHHHHHHhhhhcchhhcCCcccCCCceeeeHHhHHHHHHhcccccccCCCCCCCccccCchhhhCCcch
Confidence 333 3334445556677787643 3456799999999999998775 679999999999999999998764
Q ss_pred CCcccccccccccccccchh
Q 000318 1082 KEGDDSLASERQTWLADESV 1101 (1675)
Q Consensus 1082 ~~~~~a~~~~~k~yLpde~~ 1101 (1675)
.+ -+..++|+|+++-
T Consensus 1105 ----kn-~~~~k~~i~e~~~ 1119 (1266)
T KOG1525|consen 1105 ----KN-FINNKIYIPEETE 1119 (1266)
T ss_pred ----hh-hccccccCCchhc
Confidence 22 2468999999943
No 2
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=9.3e-14 Score=184.17 Aligned_cols=490 Identities=17% Similarity=0.133 Sum_probs=249.7
Q ss_pred CcCccccHHHHHHHHhhccccchHhHHHHHHHhhcchhhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCcc
Q 000318 640 PLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGL 719 (1675)
Q Consensus 640 P~lFk~~v~~Li~lL~~~~~~~~~~aLkiLak~~k~~~e~~~~~~s~l~~~L~~lal~GtpkqAKyAvr~Laa~~~~~~~ 719 (1675)
+.+|..-...|+..|.. ..+.++..++..++.............++..|.++..+..||.+.+|..+..+...
T Consensus 583 ~nlF~~~~~~li~~I~~-------v~~di~~s~~~~ik~~~~~i~~~~~~l~e~v~~~~a~kl~~~lle~ls~~~~~~~~ 655 (1266)
T KOG1525|consen 583 KNLFSSMEKELIERIAE-------VSLDILESISALIKLNNIVIAEVSLLLLEGVLSEKALKLKKYLLEALSSIHPDLFK 655 (1266)
T ss_pred cchHHHHHHHHHHHhcc-------hhhhhHHHHHHHHhhhhhhHHHHHhhcccccchhhHHhHHHHHHHHhhhcCcchhh
Confidence 55888888888888775 34555555554444333223333445566778888889999999999877665322
Q ss_pred chHHHHHHHHHHhhh--hcCCCchHHHHHHHHHhhcccccccchHHHHHHHHHhhhcccCccCCCCCCCCCCchhhHHHH
Q 000318 720 KSLSVLYKRLVDMLE--EKTHLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLK 797 (1675)
Q Consensus 720 ~~~~~L~~~L~~~L~--~~~~l~t~L~sLg~Iaq~aP~vfe~~~~eI~~fIik~ILl~~~~~~~~~~~~W~d~s~~~~aK 797 (1675)
.+..+..|+..+. .....|.+|+.+.+++ +.+-......+..++-.-.....+......+..|..-...++.+
T Consensus 656 --~s~~v~~i~~~~~~~~~~~~~~vLk~~~~~~---~~~~~~~~si~~~~~~~~~~~~~~g~~~q~k~~~~~i~~~~~s~ 730 (1266)
T KOG1525|consen 656 --YSESVLSILEKLFSEPDVVAPVVLKKLESQG---KKIEVEAPSILSTLSRVLAKKELSGTPEQAKLAKRCIKAILQSK 730 (1266)
T ss_pred --hhHHHHHHHHHhccchhhhhHHHHHHHHhcc---ccccccchhhhcchhhhhhHHHHcCCcchhHHHhhhhhHHhhhh
Confidence 1233444444432 2237788899988888 33333322223233221111111111112223343223333333
Q ss_pred HHHHHHHHHhhcCCCccccccchHHHHHHHHHhhccCcCccCCCCChhhHhHhHHHHHHHHHHhhhccCCCCCHHHHHHH
Q 000318 798 IYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLT 877 (1675)
Q Consensus 798 i~aLK~Lvn~ll~~~~~~~~~~i~~ll~lL~~il~~GEl~~~~~tp~~~ksrLRLaAa~sLLKLAr~~d~~i~~d~f~l~ 877 (1675)
.. .+.+......+..........-.+...++.-|++... .|.+.+..++..++..|+|.. .+....+.+.+.-.
T Consensus 731 ~~---~l~q~~~~~~d~l~~~~~~~~e~~~~~i~~lgei~~~--~p~~~~~~~k~~~~~~IvK~~-~~~~~~~~e~~~~~ 804 (1266)
T KOG1525|consen 731 FC---KLKQTFEEIKDNLLEDLTSELEGLRTPIVTLGEIFLD--LPSQFLDPLKSDVAKFIVKKV-LSNDDSPGEKNKSK 804 (1266)
T ss_pred hh---HHHHHhhhhHHHHhhhhhhhhhccccchhhhhhHhhh--ccHhhcchhhhhhHHHHHHHH-hcCCCccccccCcc
Confidence 22 2233333333221111111222333334455677654 458999999999999999998 66666655665222
Q ss_pred hhcccCCchhHHHHHHHHHHHhHhcCCCchhHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHHhhhhhccccccccCCc
Q 000318 878 LRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEENLADIIQMHHQMKARQISVQSDANSFATYP 957 (1675)
Q Consensus 878 ~ll~qD~~~~VR~~Fl~KL~k~L~~~~Lp~kY~~lf~laa~a~ep~e~e~~lk~~i~~~~~sr~r~~s~~s~a~~~~~~p 957 (1675)
.++..+.. ++.-+++-++.. . .. ..|-.....+ ....
T Consensus 805 ~~~P~~~~-------------------~~p~~~~k~~a~----------~--------L~--~~~l~~~~~d----~~~~ 841 (1266)
T KOG1525|consen 805 EWLPSDKL-------------------LSPNTSLKVLAI----------K--------LL--VRRLLDLEED----KEKD 841 (1266)
T ss_pred ccCCcccc-------------------cchhhhhHHHHH----------H--------Hh--hhhccccccC----cchh
Confidence 23222211 111122211100 0 00 0000000000 1222
Q ss_pred hhhhHH---HHhHhcCCCCCCccchhcHHHHHHHHHHHHHHHHHhhccCccccccccccccHHHHHHHHHHhhccccccc
Q 000318 958 EYIIPY---LVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIISIFRSIKCSEDIVD 1034 (1675)
Q Consensus 958 Ey~Lpr---LIHLLAHH~~Pd~ee~~d~~~~~~~~~~L~F~L~~L~~~~~~~~~~~a~~eNiSlLy~La~rIKq~rDa~d 1034 (1675)
|+..+| +|..|.|-..+.-....+-.... .+|. ..+ ..-+..+ .+++.+....
T Consensus 842 e~s~~~~~~~L~~ll~~~gdl~~~~~~~~~~~---sklr----~~a---------------~~~ilKl-~~~~~~~e~~- 897 (1266)
T KOG1525|consen 842 ELSTPRSFRLLSKLLNSEGDLTEQNRDPKSDQ---SKLR----LTA---------------KITILKL-ASEKSYHEFI- 897 (1266)
T ss_pred hhcchhHHHHHHHHHhhcCCCCcccCCcchhh---hhhh----hhh---------------hheeeec-ccccchhccC-
Confidence 344443 55555555211111111111110 0000 000 0111111 1344444433
Q ss_pred cccCcchHHHHHHHHHHHH-------HHhccCCCCcccccccCCCccccCCCCCCCcccccccccccccccchhhhhhhh
Q 000318 1035 AAKSKNSHAICDLGLSITK-------RLSRMEDNSQGVFSSVSLPSTLYKPYEKKEGDDSLASERQTWLADESVLTHFES 1107 (1675)
Q Consensus 1035 ~~~S~nlY~LcDLAq~IIk-------~~a~k~w~lqsyPGkV~LPs~lF~p~~s~~~~~a~~~~~k~yLpde~~l~~~~~ 1107 (1675)
+-...+.+++.+.- .++.+ ++.+=.++.||..+... .+-|.|+.....+...
T Consensus 898 -----~~~~~~~~~~~i~de~~~vR~~f~~k---l~k~l~~i~lp~~~~a~-------------~~l~~~d~~~~~~~~~ 956 (1266)
T KOG1525|consen 898 -----NAEQYEKLILLISDECLQVRLVFLLK---LHKGLSRIKLPLEYMAK-------------FKLCAPDVSKELLANK 956 (1266)
T ss_pred -----CHHHHHHHHHHhcCCchhHHHHHHHH---ccccccccccchhhhhH-------------HHHhccchhhhhhhHH
Confidence 33444444444433 23322 22222336677643322 3445555555555556
Q ss_pred hcccccccccc--hhhhcccccccccCCCccchhHHHHHhhcccccCCccccccCchhhhccCCCchhhhhhhhhccccc
Q 000318 1108 LKLETHEVVGS--EIARHEALDDLEKDGNEVPLGKMIQQLKSQGAKGGKAKKKKSSPAEVKGTENDVDILQMVREINLDN 1185 (1675)
Q Consensus 1108 l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1185 (1675)
....+.+.++. ++....+. .+|- +.++-++.-++.+-..++.++.+++| ||+.|.+++++++.-
T Consensus 957 ~~~~t~~~~~~r~~t~~e~~~----s~~~----~~~~~e~V~~~~~~~la~d~~~~~~e------dv~~l~~~ke~~~~v 1022 (1266)
T KOG1525|consen 957 REEETKNSASRREQTKFERAT----SDGT----LAHLPEYVGSYVIHLLAHDPDFVKAE------DVDSLSDLKECLWFV 1022 (1266)
T ss_pred HHhhhhcchhhhhhhhhhhcc----Cchh----hhhhhHHhhhhhhhhhccCccccccc------hhhhHHHHHHhHHHH
Confidence 66666666554 22222222 3343 77888888888888889999998888 999999999999999
Q ss_pred ccCccccccCCCCCCCCcccccchhhHHHHhhccCCcccc-cccCccccccccCCCCCCCCCCCC
Q 000318 1186 LGVLNKFESSNGHKHFPSKQIKVDLENEEIKKRKATDVTS-FPVPKRRRSLSAHGGFRTPKSNSK 1249 (1675)
Q Consensus 1186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 1249 (1675)
+..++.++.+|+|.+....+.+-..-....-.+.+++.++ +.|+.+.+.+..+.+..++.+..+
T Consensus 1023 l~~l~~~~~n~~~~~~~~~~~~~~~~~d~~s~~d~~~~~kl~~l~d~a~~i~~sk~~~~s~~~tt 1087 (1266)
T KOG1525|consen 1023 LEDLDEENENNQHKFWKREKEEIKGSEDEESPDDVGDNIKLYTLCDLAQCIILSKSTKFSNSSTT 1087 (1266)
T ss_pred HhhhhhhhccchhHHHHHHHhhhhcchhhcCCcccCCCceeeeHHhHHHHHHhcccccccCCCCC
Confidence 9999999999999877555443222222222244444444 678888888888887777766655
No 3
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=98.95 E-value=1.3e-09 Score=95.30 Aligned_cols=43 Identities=35% Similarity=0.641 Sum_probs=36.0
Q ss_pred ccCceEEEecCCCCceEEEEEEEecCCCCeeEEEccCCcceee
Q 000318 1376 LIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVL 1418 (1675)
Q Consensus 1376 lvG~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdDGd~E~l 1418 (1675)
-.|.+|++|||++..||+|.|++||+.++.|+|.|+||++..|
T Consensus 7 ~~Ge~V~~rWP~s~lYYe~kV~~~d~~~~~y~V~Y~DGtel~l 49 (55)
T PF09465_consen 7 AIGEVVMVRWPGSSLYYEGKVLSYDSKSDRYTVLYEDGTELEL 49 (55)
T ss_dssp -SS-EEEEE-TTTS-EEEEEEEEEETTTTEEEEEETTS-EEEE
T ss_pred cCCCEEEEECCCCCcEEEEEEEEecccCceEEEEEcCCCEEEe
Confidence 4899999999999999999999999999999999999999544
No 4
>PTZ00429 beta-adaptin; Provisional
Probab=98.66 E-value=9.1e-05 Score=97.24 Aligned_cols=392 Identities=12% Similarity=0.059 Sum_probs=209.6
Q ss_pred ccccCCchHHHHHHHH-HHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHH
Q 000318 269 GELLTDQLDTRLKAVG-LVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTAL 347 (1675)
Q Consensus 269 ~EL~sed~~~Rl~At~-llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L 347 (1675)
.+|.+.+...|..|++ +++-|.-+ -+...-|+++-+.+ .=.+..+|.-+--++..+...+|+ .+--.++.|
T Consensus 39 ~~L~s~~~~~kk~alKkvIa~mt~G--~DvS~LF~dVvk~~----~S~d~elKKLvYLYL~~ya~~~pe--lalLaINtl 110 (746)
T PTZ00429 39 NDLNGTDSYRKKAAVKRIIANMTMG--RDVSYLFVDVVKLA----PSTDLELKKLVYLYVLSTARLQPE--KALLAVNTF 110 (746)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHCC--CCchHHHHHHHHHh----CCCCHHHHHHHHHHHHHHcccChH--HHHHHHHHH
Confidence 3344556666677665 66666544 35566666666544 334778888777777665555554 233568999
Q ss_pred HhhhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCcchhcccc
Q 000318 348 CDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEW 427 (1675)
Q Consensus 348 ~~rL~D~DEkVR~aaV~ai~~la~~~l~~Vs~elL~~laeR~RDKK~~VRkeAm~~La~LY~~~~~~~~~~~~~~~~~~w 427 (1675)
.+=|.|+++-||.-|+.++|.+-... +-+.++..|..-+.|+.+-||+.|.-+++++|+..- .....-+|
T Consensus 111 ~KDl~d~Np~IRaLALRtLs~Ir~~~---i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p-------elv~~~~~ 180 (746)
T PTZ00429 111 LQDTTNSSPVVRALAVRTMMCIRVSS---VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM-------QLFYQQDF 180 (746)
T ss_pred HHHcCCCCHHHHHHHHHHHHcCCcHH---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc-------ccccccch
Confidence 99999999999999888886654433 223456677778899999999999999999999632 11123456
Q ss_pred chHHHhhhhccCCCCchhHHHHhhccCcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000318 428 IPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMH 507 (1675)
Q Consensus 428 IP~~IL~~~Y~nd~~~~lVE~vL~e~LlP~~~~~~~R~~~ll~l~~~LD~~~~kal~~il~~k~~l~~~~~~~l~l~~~~ 507 (1675)
+|. +..+..+.|.. .+-.. +..|..+.. -++. .+. + ....+++++......
T Consensus 181 ~~~-L~~LL~D~dp~--Vv~nA---------------l~aL~eI~~-~~~~---~l~-l------~~~~~~~Ll~~L~e~ 231 (746)
T PTZ00429 181 KKD-LVELLNDNNPV--VASNA---------------AAIVCEVND-YGSE---KIE-S------SNEWVNRLVYHLPEC 231 (746)
T ss_pred HHH-HHHHhcCCCcc--HHHHH---------------HHHHHHHHH-hCch---hhH-H------HHHHHHHHHHHhhcC
Confidence 653 44443333321 11111 001111110 0110 000 0 111122222221111
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCc--h
Q 000318 508 QDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHR--L 585 (1675)
Q Consensus 508 ~~~d~~ei~~kL~~~i~~Ls~~fPDp~Ka~e~L~kf~klnD~Ri~kLLk~~idp~td~~t~~~a~kELlkkL~~~~~--~ 585 (1675)
+ +=.|-. +++.|+..-|+. -.+.......++.+|...++ +
T Consensus 232 ---~-EW~Qi~---IL~lL~~y~P~~-------------------------------~~e~~~il~~l~~~Lq~~N~AVV 273 (746)
T PTZ00429 232 ---N-EWGQLY---ILELLAAQRPSD-------------------------------KESAETLLTRVLPRMSHQNPAVV 273 (746)
T ss_pred ---C-hHHHHH---HHHHHHhcCCCC-------------------------------cHHHHHHHHHHHHHhcCCCHHHH
Confidence 0 111111 223333322321 11122233444444544333 4
Q ss_pred HHHHHHHHHhhhccccChhHHHHHHHHHHhh---cccchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccccch
Q 000318 586 YDFLSTLSMKCSYLLFNKEHVKEILLEVAAQ---KSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIK 662 (1675)
Q Consensus 586 ~d~l~~Ll~R~S~li~Nks~V~~LL~~v~~~---~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v~~Li~lL~~~~~~~~ 662 (1675)
++.++.++.-..+. +.+.+..++.++... .........-.+.+-|..|...+|.+|..+.+.+.-...|.. .+.
T Consensus 274 l~Aik~il~l~~~~--~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~-yIK 350 (746)
T PTZ00429 274 MGAIKVVANLASRC--SQELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPP-FVK 350 (746)
T ss_pred HHHHHHHHHhcCcC--CHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcH-HHH
Confidence 56666655443322 444444444333210 011111123356677888999999999887655543333322 367
Q ss_pred HhHHHHHHHhhcchhhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhhcC-CCch
Q 000318 663 EGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT-HLPA 741 (1675)
Q Consensus 663 ~~aLkiLak~~k~~~e~~~~~~s~l~~~L~~lal~GtpkqAKyAvr~Laa~~~~~~~~~~~~L~~~L~~~L~~~~-~l~t 741 (1675)
...|.+|+..+.. ++ -..+..-|..|+.+-++.-++.||++|+.+.-.- ......++..|.+-+.... ....
T Consensus 351 ~~KLeIL~~Lane--~N----v~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~-~~~a~~cV~~Ll~ll~~~~~~v~e 423 (746)
T PTZ00429 351 LEKLRLLLKLVTP--SV----APEILKELAEYASGVDMVFVVEVVRAIASLAIKV-DSVAPDCANLLLQIVDRRPELLPQ 423 (746)
T ss_pred HHHHHHHHHHcCc--cc----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHhcCCchhHHH
Confidence 7889999887632 11 1235566778898888999999999988665321 1223344555555554322 2223
Q ss_pred HHHHHHHHHhhccc
Q 000318 742 VLQSLGCIAQTAMP 755 (1675)
Q Consensus 742 ~L~sLg~Iaq~aP~ 755 (1675)
.+.++-.|.+..|.
T Consensus 424 ~i~vik~IlrkyP~ 437 (746)
T PTZ00429 424 VVTAAKDIVRKYPE 437 (746)
T ss_pred HHHHHHHHHHHCcc
Confidence 45556666665664
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=0.00052 Score=90.66 Aligned_cols=529 Identities=14% Similarity=0.157 Sum_probs=286.3
Q ss_pred hHHHHHHHHHhhcchhhhhhhhhhccccc-CCchHHHHHHHHHHHHhhcCCCCCchhh-c----HHHHHHHHhcccCCCh
Q 000318 244 DYHEVIYDVYRCSPQILSGVVPYLTGELL-TDQLDTRLKAVGLVGDLFAVPGSANNEQ-F----HSVFSEFLKRLTDRIV 317 (1675)
Q Consensus 244 ~~h~Li~eL~~~~P~lL~~ViPqLe~EL~-sed~~~Rl~At~llG~mfs~~~s~~a~~-y----~~lw~~fL~R~~D~s~ 317 (1675)
.+-+.+-.+|+--| ++|.|.+-+. +.++++|..|.-++-|+++..-..+... - .++...++ .-..+
T Consensus 23 ~Ae~~l~~~~~~~~-----~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~---~E~~~ 94 (1075)
T KOG2171|consen 23 QAEEALETLAKTEP-----LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQ---SETEP 94 (1075)
T ss_pred HHHHHHHHhhcccc-----hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH---hccch
Confidence 46677777888888 7777777777 7799999999999999887643333222 2 23333333 34788
Q ss_pred hHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCCCC---HHHHHHHHHhhccCCh
Q 000318 318 AVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIP---VETVKLVAERLRDKSV 394 (1675)
Q Consensus 318 ~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~Vs---~elL~~laeR~RDKK~ 394 (1675)
.||.+..+.+..|-.+-... .-++++..|..+.+++++..|-.|+-.+..+...--.... .+++..+..-|-|-..
T Consensus 95 ~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~ 173 (1075)
T KOG2171|consen 95 SVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSS 173 (1075)
T ss_pred HHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcc
Confidence 99999999888876654321 3579999999999999999999999998887653333333 2677788899999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhccCCCcchhcc-ccchHHHhhhhccCCCCchhHHHHhhccCcCCCCCHHHHHHHHHHHHh
Q 000318 395 LVKRYTMERLADIFRGCCLRNFNGSINQNEF-EWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFS 473 (1675)
Q Consensus 395 ~VRkeAm~~La~LY~~~~~~~~~~~~~~~~~-~wIP~~IL~~~Y~nd~~~~lVE~vL~e~LlP~~~~~~~R~~~ll~l~~ 473 (1675)
.||-.|.++++.+.... ++++.....| .-+|+-|.-+-- .++.. ..+....++
T Consensus 174 ~vr~~a~rA~~a~~~~~----~~~~~~~~~~~~llP~~l~vl~~----------------~i~~~-----d~~~a~~~l- 227 (1075)
T KOG2171|consen 174 PVRVAAVRALGAFAEYL----ENNKSEVDKFRDLLPSLLNVLQE----------------VIQDG-----DDDAAKSAL- 227 (1075)
T ss_pred hHHHHHHHHHHHHHHHh----ccchHHHHHHHHHhHHHHHHhHh----------------hhhcc-----chHHHHHHH-
Confidence 99999999999876532 1233333444 455665543310 00000 000011111
Q ss_pred cCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhh--hcCCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhccHH
Q 000318 474 GFDRIEMKALEKILEQKQR-LQQEMQRYLSLRQM--HQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDAN 550 (1675)
Q Consensus 474 ~LD~~~~kal~~il~~k~~-l~~~~~~~l~l~~~--~~~~d~~ei~~kL~~~i~~Ls~~fPDp~Ka~e~L~kf~klnD~R 550 (1675)
++|..++..-.+ ++..+...|+++-. .+..-++.+....-.+|-+++..-|-..| +...+-++=
T Consensus 228 -------~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k------~~~~~~~~l 294 (1075)
T KOG2171|consen 228 -------EALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCK------KLALLGHTL 294 (1075)
T ss_pred -------HHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhh------hchhhhccH
Confidence 112222211111 23333344444321 11122233333333345555555332222 222222333
Q ss_pred HHHHHHHHhcCCCC-----------------HHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhccccChhHHHHHHHHH
Q 000318 551 VWKILMNLLDSNTS-----------------FDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEV 613 (1675)
Q Consensus 551 i~kLLk~~idp~td-----------------~~t~~~a~kELlkkL~~~~~~~d~l~~Ll~R~S~li~Nks~V~~LL~~v 613 (1675)
+-.++.-+++-+.| +.-+..+.+-+-..||.+. -++-++..+
T Consensus 295 v~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~---------------------v~p~~~~~l 353 (1075)
T KOG2171|consen 295 VPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQ---------------------VLPPLFEAL 353 (1075)
T ss_pred HHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhh---------------------ehHHHHHHH
Confidence 33333333332233 3333333444444444443 223333332
Q ss_pred HhhcccchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHH----HhhccccchHhHHHHHHHhhcchhhhhhccc-chHH
Q 000318 614 AAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNL----LKEENEIIKEGILHVLAKAGGTIREQLAATS-SSVD 688 (1675)
Q Consensus 614 ~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v~~Li~l----L~~~~~~~~~~aLkiLak~~k~~~e~~~~~~-s~l~ 688 (1675)
.....+.+-.....++--|-.|+.-|+.+..++..+++.+ |.|..|.+...++.++.+.+..+...+.... +.+.
T Consensus 354 ~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~ 433 (1075)
T KOG2171|consen 354 EAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLP 433 (1075)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhcc
Confidence 2221122222333445555667777777777776555554 4555667888899999877644321111101 1122
Q ss_pred HH-HHHHhhcCChHHHHHHHHHHHhhcCCCccc----hHHHHHHHHHHhhhhc-C--CCchHHHHHHHHHhhcccccccc
Q 000318 689 LL-LERLCLEGSRRQAKYAVHALAAITKDDGLK----SLSVLYKRLVDMLEEK-T--HLPAVLQSLGCIAQTAMPVFETR 760 (1675)
Q Consensus 689 ~~-L~~lal~GtpkqAKyAvr~Laa~~~~~~~~----~~~~L~~~L~~~L~~~-~--~l~t~L~sLg~Iaq~aP~vfe~~ 760 (1675)
+. +..+-..++++.-.||+.+|....-.-... ++..|++.....|..+ + -...++++||.+|.-+-.-|..+
T Consensus 434 ~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY 513 (1075)
T KOG2171|consen 434 PALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPY 513 (1075)
T ss_pred HHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhH
Confidence 12 222334577888889998887544321112 3333444333334322 2 34457889999999998899988
Q ss_pred hHHHHHHHHHhhhcccCccCCCCCCCCCCchhhHHHHHHHHHHHHHhhcCCCccccccchHHHHHHHHHhhccCcCccCC
Q 000318 761 ESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDI 840 (1675)
Q Consensus 761 ~~eI~~fIik~ILl~~~~~~~~~~~~W~d~s~~~~aKi~aLK~Lvn~ll~~~~~~~~~~i~~ll~lL~~il~~GEl~~~~ 840 (1675)
-+.++.++. ++|..+.. ++-.+.+.|. +.|+.-.-++...+...+.+..++.+|-.+- +|+.....
T Consensus 514 ~d~~Mp~L~-~~L~n~~~----------~d~r~Lrgkt--mEcisli~~AVGke~F~~~a~eliqll~~~~-~~~~~~dd 579 (1075)
T KOG2171|consen 514 FDRLMPLLK-NFLQNADD----------KDLRELRGKT--MECLSLIARAVGKEKFLPLAEELIQLLLELQ-GSDQDDDD 579 (1075)
T ss_pred HHHHHHHHH-HHHhCCCc----------hhhHHHHhhH--HHHHHHHHHHhhhhhhhHhHHHHHHHHHhhc-ccchhhcc
Confidence 888998875 45444321 1122333343 5555544444444456666777777765432 33443322
Q ss_pred C-CChhhHhHhHHHHH
Q 000318 841 E-SSSVDKAHLRLASA 855 (1675)
Q Consensus 841 ~-tp~~~ksrLRLaAa 855 (1675)
+ ++....+|-|++-+
T Consensus 580 ~~~sy~~~~warmc~i 595 (1075)
T KOG2171|consen 580 PLRSYMIAFWARMCRI 595 (1075)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 2 23444555555443
No 6
>PTZ00429 beta-adaptin; Provisional
Probab=98.21 E-value=0.0032 Score=83.15 Aligned_cols=122 Identities=14% Similarity=0.071 Sum_probs=97.1
Q ss_pred HHHHHHHHhhcchhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHH
Q 000318 246 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 325 (1675)
Q Consensus 246 h~Li~eL~~~~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve 325 (1675)
|--+..+.+..|++..-++..|...|.+.|+.+|-+|.+++|.+-. ..-.+.+.....+-..|.+|-||...+-
T Consensus 89 YLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~------~~i~e~l~~~lkk~L~D~~pYVRKtAal 162 (746)
T PTZ00429 89 YLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV------SSVLEYTLEPLRRAVADPDPYVRKTAAM 162 (746)
T ss_pred HHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc------HHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 4444455667899999999999999999999999999999996543 2334456666677788999999999999
Q ss_pred HhHHHHhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhh
Q 000318 326 HVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA 373 (1675)
Q Consensus 326 ~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~ 373 (1675)
++..+...+|+.-....+++.|.+.|.|.|..|-..|+.++.++....
T Consensus 163 ai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~ 210 (746)
T PTZ00429 163 GLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYG 210 (746)
T ss_pred HHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhC
Confidence 999998888864333457788888899999999999999998875443
No 7
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.95 E-value=0.0022 Score=81.50 Aligned_cols=117 Identities=16% Similarity=0.161 Sum_probs=98.7
Q ss_pred HHHHHHHHHhhcchhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHH
Q 000318 245 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVL 324 (1675)
Q Consensus 245 ~h~Li~eL~~~~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~V 324 (1675)
.|-.+..++...|+++.-++..|...|.++|+.+|-.|.++++.+-. ..--+.+...-..-.+|.++.||...+
T Consensus 62 ~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~------~~~~~~l~~~v~~ll~~~~~~VRk~A~ 135 (526)
T PF01602_consen 62 GYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRT------PEMAEPLIPDVIKLLSDPSPYVRKKAA 135 (526)
T ss_dssp HHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S------HHHHHHHHHHHHHHHHSSSHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc------cchhhHHHHHHHHHhcCCchHHHHHHH
Confidence 46667788899999999999999999999999999999999999652 223355666666777799999999999
Q ss_pred HHhHHHHhcCCCCCChHH-HHHHHHhhhCCchhHHHHHHHHHHHHh
Q 000318 325 EHVKSCLLTDPSRADAPQ-ILTALCDRLLDFDENVRKQVVAVICDV 369 (1675)
Q Consensus 325 e~~~~iL~~~p~~~~~~e-i~~~L~~rL~D~DEkVR~aaV~ai~~l 369 (1675)
-++.++....|+. ... +++.|...|.|+|..|+.+|+.+++++
T Consensus 136 ~~l~~i~~~~p~~--~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 136 LALLKIYRKDPDL--VEDELIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHHHHHHCHCC--HHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCHHH--HHHHHHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 9999999888863 334 789999999999999999999999887
No 8
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.94 E-value=0.27 Score=67.45 Aligned_cols=340 Identities=18% Similarity=0.177 Sum_probs=198.2
Q ss_pred chhhhhcCCCcchhHHHHHHHHHHhhh-cCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHH-hhhhhh
Q 000318 60 VQPVLLKHQDKDVKLLVATCICEITRI-TAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLA-KYRSCV 137 (1675)
Q Consensus 60 v~~~LL~HkD~~Vr~~vAcCLadIlRI-~APdAPytd~qLkdIF~l~v~qf~~L~d~~~p~f~q~~~LLE~LA-~vks~v 137 (1675)
+.+++=+..+.+.|.+.---+-|+|=. +-|+=|=+.--|.-.-.+++.+|+. ...+-..=.-..-+|-++| .+|-.-
T Consensus 587 L~rc~s~~~e~d~r~LfeNfvqDLLs~ln~PEWPatE~ILs~Lg~~Lv~~~s~-ks~~~sir~asLdlLG~IaarLrkd~ 665 (1692)
T KOG1020|consen 587 LERCFSKQGEEDYRILFENFVQDLLSALNLPEWPATELILSLLGKLLVHNFSN-KSVDVSIRTASLDLLGTIAARLRKDA 665 (1692)
T ss_pred HHHHhccCChhHHHHHHHHHHHHHHHHccCCcCccHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333433435558888888888888764 4688888877788777888888872 2112111122233444443 222111
Q ss_pred eec--------------cCC-chHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHhc---C
Q 000318 138 VML--------------DLE-CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALG---R 199 (1675)
Q Consensus 138 l~~--------------DL~-~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~vp~~vLd~IL~~l~---~ 199 (1675)
..+ +.+ .+.=+..+++++.+....... ..=++.++.--..+.+-..|+.+.... .
T Consensus 666 v~s~l~~g~v~~~~~~~s~~~~~~k~~~l~~~Lldfl~~~~~-------~~~~~~v~~~~fyi~~w~~d~~le~~~~~~~ 738 (1692)
T KOG1020|consen 666 VLSKLEQGSVDRELDQDSEEKHNIKLIVLQKTLLDFLKSNTE-------ETALSEVYACHFYIAQWYRDTRLETILIMEE 738 (1692)
T ss_pred HHHHHhhccchhhhhhcccccccchhhhhHHHHHHHHHHhhh-------ccchhhHHHhhHHHHhHHHHHHHHHHHHHHh
Confidence 111 001 011123333333322110000 000001111111233333333333221 1
Q ss_pred CC------cH---HHHHHHHHHHHHhhhhhHHHHHHHHHH--hhcCCCCC-CCCcchHHHHHHHHHhhcchhhhhhhhhh
Q 000318 200 NK------ND---TARRLAMNVIEQCAGKLEAGIKQFLVS--SMSGDSRP-GHSHIDYHEVIYDVYRCSPQILSGVVPYL 267 (1675)
Q Consensus 200 ~~------~~---~a~~lA~~v~~~~~dkL~~~I~qyf~~--il~~~~~~-~~~~~~~h~Li~eL~~~~P~lL~~ViPqL 267 (1675)
++ .. -.+.++.+.+..-..+|+-++.+.-.. ...+.... .....+.-.+|+..-..+-++..+.=|+|
T Consensus 739 ~kd~~s~~~~~~~~~~el~~~~v~~~~n~~K~~~~~Ik~~~~~~~~~~~~s~~~d~~~a~li~~~la~~r~f~~sfD~yL 818 (1692)
T KOG1020|consen 739 NKDVDSNEGTHHWFSFELAYEKVITVENELKYILSKIKDKEKSGRGPKLNSRFADDDDAKLIVFYLAHARSFSQSFDPYL 818 (1692)
T ss_pred ccCccccccchhHHHHHHHHHHHhhhHHHHHHHHHHhcchhhhccCcCCCCccccchhHHHHHHHHHhhhHHHHhhHHHH
Confidence 11 00 334666666655555554443322111 00010001 11112233444444444444444444444
Q ss_pred ccc---ccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHH
Q 000318 268 TGE---LLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQIL 344 (1675)
Q Consensus 268 e~E---L~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~ 344 (1675)
..- |..+...+|.+|.+.|..|...+. .+-.+|+.=.+--+|++|-+..||-+.|+.++.+++++|+ .+.+.-
T Consensus 819 k~Il~~l~e~~ialRtkAlKclS~ive~Dp--~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e--~~~qyY 894 (1692)
T KOG1020|consen 819 KLILSVLGENAIALRTKALKCLSMIVEADP--SVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPE--LIFQYY 894 (1692)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHhcCh--HhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHH--HHHHHH
Confidence 332 345779999999999999998865 5788999999999999999999999999999999999986 366888
Q ss_pred HHHHhhhCCchhHHHHHHHHHHHHhhhhhcCCC-CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHH
Q 000318 345 TALCDRLLDFDENVRKQVVAVICDVACHALNSI-PVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1675)
Q Consensus 345 ~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V-s~elL~~laeR~RDKK~~VRkeAm~~La~LY~~~ 411 (1675)
+.+..|..|+---||..|++.++++....+... -+++...+..|+-|=--.|.+-+.+.+.++|-.=
T Consensus 895 ~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p 962 (1692)
T KOG1020|consen 895 DQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTP 962 (1692)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999765444322 2345666778999998889999999999998753
No 9
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.81 E-value=0.31 Score=64.06 Aligned_cols=382 Identities=15% Similarity=0.165 Sum_probs=210.6
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhchhhhhcCCCcchhHHHHHHHHHHhhhcCCCCCCChhHHHH
Q 000318 21 STKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKD 100 (1675)
Q Consensus 21 ~s~~eLlkrLk~L~~~Ls~~dQ~~~~~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~APdAPytd~qLkd 100 (1675)
..+.+|..+|++-.-.| | .++...+.+.|+ ++|.-++.+||-++.-||+=|.- --...+++.
T Consensus 24 MAtsDLm~eLqkdsi~L---d-------~dSe~kvv~~lL--klL~D~ngEVQnlAVKClg~lvs------Kvke~~le~ 85 (1233)
T KOG1824|consen 24 MATSDLMTELQKDSIKL---D-------DDSERKVVKMLL--KLLEDKNGEVQNLAVKCLGPLVS------KVKEDQLET 85 (1233)
T ss_pred hhHHHHHHHHHhhhhhc---c-------ccchhHHHHHHH--HHHhccCcHHHHHHHHHHHHHHh------hchHHHHHH
Confidence 45677888887753333 2 233445555554 47888999999999999975541 112345555
Q ss_pred HHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhheeccCCchHHHHHHHHHHHHhhcC-----CChhhHHHHHHHHH
Q 000318 101 IFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASD-----DHPESVLSSMQTIM 175 (1675)
Q Consensus 101 IF~l~v~qf~~L~d~~~p~f~q~~~LLE~LA~vks~vl~~DL~~~~Li~~lF~~ff~~v~~-----~~~~~V~~~m~~IL 175 (1675)
|-.=+..-. +++.+.--|.-...|...++++.=++ ...+-..+|+.|...... +....+.-..++||
T Consensus 86 ~ve~L~~~~--~s~keq~rdissi~Lktvi~nl~P~~------~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil 157 (1233)
T KOG1824|consen 86 IVENLCSNM--LSGKEQLRDISSIGLKTVIANLPPSS------SSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDIL 157 (1233)
T ss_pred HHHHHhhhh--ccchhhhccHHHHHHHHHHhcCCCcc------ccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHH
Confidence 444333321 23333333444455555555543110 123334444444433222 22233566678888
Q ss_pred HHHhcccccc-cH---HHHHHHHHHhcCCCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCC--CCCCCCcch-HHHH
Q 000318 176 IVLLEESEDI-QE---DLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGD--SRPGHSHID-YHEV 248 (1675)
Q Consensus 176 ~~vI~Ese~v-p~---~vLd~IL~~l~~~~~~~a~~lA~~v~~~~~dkL~~~I~qyf~~il~~~--~~~~~~~~~-~h~L 248 (1675)
..++.-..++ |. .++..++-++..++. +-++=|.-.+-.-+....+.+-.++.+.+..+ +....+..+ +-..
T Consensus 158 ~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~-aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~ 236 (1233)
T KOG1824|consen 158 ADVLSRFGTLLPNFHLSILKCLLPQLQSPRL-AVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQC 236 (1233)
T ss_pred HHHHHhhcccCcchHHHHHHHHhhcccChHH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHH
Confidence 8888876653 32 344444444433221 22222222222222222333333333333221 112222222 2344
Q ss_pred HHHHHhhcc----hhhhhhhhhhcccc---cCCchHHHHHHHHHHHHhhcCCCC---------------------Cchh-
Q 000318 249 IYDVYRCSP----QILSGVVPYLTGEL---LTDQLDTRLKAVGLVGDLFAVPGS---------------------ANNE- 299 (1675)
Q Consensus 249 i~eL~~~~P----~lL~~ViPqLe~EL---~sed~~~Rl~At~llG~mfs~~~s---------------------~~a~- 299 (1675)
|-+|.+.+= .-+..++|.+.+.. ..++.++|....+.++-.+--..- |+.-
T Consensus 237 l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd 316 (1233)
T KOG1824|consen 237 LAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYD 316 (1233)
T ss_pred HHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCC
Confidence 444444432 33455777777777 788999999999988865543211 1100
Q ss_pred hcHHHHHHHHhc------------ccCCChhHHHHHHHHhHHHHhcCCCC--CChHHHHHHHHhhhCCchhHHHHHHHHH
Q 000318 300 QFHSVFSEFLKR------------LTDRIVAVRMSVLEHVKSCLLTDPSR--ADAPQILTALCDRLLDFDENVRKQVVAV 365 (1675)
Q Consensus 300 ~y~~lw~~fL~R------------~~D~s~~VR~~~Ve~~~~iL~~~p~~--~~~~ei~~~L~~rL~D~DEkVR~aaV~a 365 (1675)
+.-+.=..|+.- =.|.+=.||.+..++...++.++++. .--+.+-..|..|+.|-+|+|+..+..+
T Consensus 317 ~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~ 396 (1233)
T KOG1824|consen 317 TEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHA 396 (1233)
T ss_pred CccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHH
Confidence 001122222222 23556689999999999999987642 1223455788899999999999999999
Q ss_pred HHHhhhhhcCCC---------------------CH---HHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCcc
Q 000318 366 ICDVACHALNSI---------------------PV---ETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSIN 421 (1675)
Q Consensus 366 i~~la~~~l~~V---------------------s~---elL~~laeR~RDKK~~VRkeAm~~La~LY~~~~~~~~~~~~~ 421 (1675)
+.++-......+ +. -+++.++.-+|+|+.+-|.-|+..|..+-+.+-....
T Consensus 397 yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~----- 471 (1233)
T KOG1824|consen 397 YIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALA----- 471 (1233)
T ss_pred HHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhh-----
Confidence 987754332211 11 2457889999999999999999999999988643221
Q ss_pred hhccccchHHHhh
Q 000318 422 QNEFEWIPGKILR 434 (1675)
Q Consensus 422 ~~~~~wIP~~IL~ 434 (1675)
...+.-+|+-+..
T Consensus 472 ~~~~slvpgI~~~ 484 (1233)
T KOG1824|consen 472 QHIPSLVPGIIYS 484 (1233)
T ss_pred hcccccchhhhhh
Confidence 1234455655543
No 10
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.53 E-value=0.22 Score=68.23 Aligned_cols=135 Identities=21% Similarity=0.282 Sum_probs=101.6
Q ss_pred chhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCC
Q 000318 297 NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS 376 (1675)
Q Consensus 297 ~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~ 376 (1675)
|...|....+--|+=..--.+.||..+++|...|....|.-.-..++-.++..|++|+---||-|||.-++.......+.
T Consensus 810 f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~ 889 (1692)
T KOG1020|consen 810 FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPEL 889 (1692)
T ss_pred HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHH
Confidence 44444444444455555778999999999999988887764334688899999999999999999999998755444332
Q ss_pred CCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCcchhccccchHHHhhhh-ccCCCCc
Q 000318 377 IPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCL-YDKDFGS 443 (1675)
Q Consensus 377 Vs~elL~~laeR~RDKK~~VRkeAm~~La~LY~~~~~~~~~~~~~~~~~~wIP~~IL~~~-Y~nd~~~ 443 (1675)
+ .+....+++|+.|--..||+.||.-|-.+|-.+ +.|.-||.-+-... .++|-+.
T Consensus 890 ~-~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~-----------pdf~~i~~~cakmlrRv~DEEg 945 (1692)
T KOG1020|consen 890 I-FQYYDQIIERILDTGVSVRKRVIKILRDICEET-----------PDFSKIVDMCAKMLRRVNDEEG 945 (1692)
T ss_pred H-HHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhC-----------CChhhHHHHHHHHHHHhccchh
Confidence 2 345678899999999999999999999999864 44666666655543 3566553
No 11
>PRK09687 putative lyase; Provisional
Probab=97.50 E-value=0.00064 Score=80.39 Aligned_cols=145 Identities=17% Similarity=0.143 Sum_probs=102.4
Q ss_pred HHHHHHHHhhcchhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhc-ccCCChhHHHHHH
Q 000318 246 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKR-LTDRIVAVRMSVL 324 (1675)
Q Consensus 246 h~Li~eL~~~~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R-~~D~s~~VR~~~V 324 (1675)
+..+..|..+-.. .|++.+..-+.+++..+|..|+..||+| +.++... +.++.....- .+|.++.||...+
T Consensus 41 ~~A~~aL~~~~~~---~~~~~l~~ll~~~d~~vR~~A~~aLg~l-g~~~~~~----~~a~~~L~~l~~~D~d~~VR~~A~ 112 (280)
T PRK09687 41 ISSIRVLQLRGGQ---DVFRLAIELCSSKNPIERDIGADILSQL-GMAKRCQ----DNVFNILNNLALEDKSACVRASAI 112 (280)
T ss_pred HHHHHHHHhcCcc---hHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCccch----HHHHHHHHHHHhcCCCHHHHHHHH
Confidence 4456666655432 2333344446788999999999999985 4333211 2333333333 4899999999999
Q ss_pred HHhHHHHhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHH
Q 000318 325 EHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERL 404 (1675)
Q Consensus 325 e~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~Vs~elL~~laeR~RDKK~~VRkeAm~~L 404 (1675)
...+++=...+. ....++..+...+.|.+..||.+|+.+++.+. +.+.+..|...+.|..+.||..|+..|
T Consensus 113 ~aLG~~~~~~~~--~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~-------~~~ai~~L~~~L~d~~~~VR~~A~~aL 183 (280)
T PRK09687 113 NATGHRCKKNPL--YSPKIVEQSQITAFDKSTNVRFAVAFALSVIN-------DEAAIPLLINLLKDPNGDVRNWAAFAL 183 (280)
T ss_pred HHHhcccccccc--cchHHHHHHHHHhhCCCHHHHHHHHHHHhccC-------CHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 999875221111 12367788888999999999999999886532 345678888999999999999999999
Q ss_pred HHH
Q 000318 405 ADI 407 (1675)
Q Consensus 405 a~L 407 (1675)
|.+
T Consensus 184 g~~ 186 (280)
T PRK09687 184 NSN 186 (280)
T ss_pred hcC
Confidence 998
No 12
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.42 E-value=0.13 Score=65.58 Aligned_cols=239 Identities=13% Similarity=0.211 Sum_probs=158.0
Q ss_pred hHHHHHHHHHhhcchhhhh-hhhhhcccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHH
Q 000318 244 DYHEVIYDVYRCSPQILSG-VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMS 322 (1675)
Q Consensus 244 ~~h~Li~eL~~~~P~lL~~-ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~ 322 (1675)
++-..+..+++.+|+++.. ++|.|..-|...+..++..|+.++..+ ..++..+..-.+.++....+...+.+|-+++.
T Consensus 133 ~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~ 211 (526)
T PF01602_consen 133 KAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIK 211 (526)
T ss_dssp HHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHH
Confidence 4667788899999999988 799999999999999999999999999 32221122334555555555558999999999
Q ss_pred HHHHhHHHHhcCCCCCCh--HHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHH
Q 000318 323 VLEHVKSCLLTDPSRADA--PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYT 400 (1675)
Q Consensus 323 ~Ve~~~~iL~~~p~~~~~--~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~Vs~elL~~laeR~RDKK~~VRkeA 400 (1675)
.++....+....+. .. ..+++.+...|......|+.+++.++..+..... +-...+..+..-+.++.+.||-.|
T Consensus 212 il~~l~~~~~~~~~--~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~--~~~~~~~~L~~lL~s~~~nvr~~~ 287 (526)
T PF01602_consen 212 ILRLLRRYAPMEPE--DADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE--LLQKAINPLIKLLSSSDPNVRYIA 287 (526)
T ss_dssp HHHHHTTSTSSSHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH--HHHHHHHHHHHHHTSSSHHHHHHH
T ss_pred HHHHHHhcccCChh--hhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH--HHHhhHHHHHHHhhcccchhehhH
Confidence 99998875544432 23 4688999999999999999999999987655433 223456677888889999999999
Q ss_pred HHHHHHHHHHHhhhccCCCcchhccccchHHHhhhhccCCCCchhHHHHhhccCcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 000318 401 MERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEM 480 (1675)
Q Consensus 401 m~~La~LY~~~~~~~~~~~~~~~~~~wIP~~IL~~~Y~nd~~~~lVE~vL~e~LlP~~~~~~~R~~~ll~l~~~LD~~~~ 480 (1675)
+..|..+-..+. ..+. -+..++.++- ...+..-|...+--++.-.++...
T Consensus 288 L~~L~~l~~~~~----------~~v~-~~~~~~~~l~-------------------~~~d~~Ir~~~l~lL~~l~~~~n~ 337 (526)
T PF01602_consen 288 LDSLSQLAQSNP----------PAVF-NQSLILFFLL-------------------YDDDPSIRKKALDLLYKLANESNV 337 (526)
T ss_dssp HHHHHHHCCHCH----------HHHG-THHHHHHHHH-------------------CSSSHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHhhcccc----------hhhh-hhhhhhheec-------------------CCCChhHHHHHHHHHhhcccccch
Confidence 988877765531 1111 1222222211 112334455555555666666544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCc
Q 000318 481 KALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEP 533 (1675)
Q Consensus 481 kal~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kL~~~i~~Ls~~fPDp 533 (1675)
+. +-..+.+|+ . +..+++++..+...|..++..||..
T Consensus 338 ~~----------Il~eL~~~l---~---~~~d~~~~~~~i~~I~~la~~~~~~ 374 (526)
T PF01602_consen 338 KE----------ILDELLKYL---S---ELSDPDFRRELIKAIGDLAEKFPPD 374 (526)
T ss_dssp HH----------HHHHHHHHH---H---HC--HHHHHHHHHHHHHHHHHHGSS
T ss_pred hh----------HHHHHHHHH---H---hccchhhhhhHHHHHHHHHhccCch
Confidence 32 223344444 1 1234557888888888888888543
No 13
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.21 Score=64.95 Aligned_cols=353 Identities=18% Similarity=0.162 Sum_probs=203.5
Q ss_pred hhhhhhhhcccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCC
Q 000318 260 LSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRAD 339 (1675)
Q Consensus 260 L~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~ 339 (1675)
|.-+.-.|...|++.+--+==+|.-+||.|++. .+++ ++.-.--.-.+-.++-||.+.+-|+-.++..-|+.
T Consensus 105 llLltNslknDL~s~nq~vVglAL~alg~i~s~---Emar---dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l-- 176 (866)
T KOG1062|consen 105 LLLLTNSLKNDLNSSNQYVVGLALCALGNICSP---EMAR---DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL-- 176 (866)
T ss_pred HHHHHHHHHhhccCCCeeehHHHHHHhhccCCH---HHhH---HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH--
Confidence 334455778899999988888999999999975 2443 33332222333368999999999999999988863
Q ss_pred hHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCC
Q 000318 340 APQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGS 419 (1675)
Q Consensus 340 ~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~Vs~elL~~laeR~RDKK~~VRkeAm~~La~LY~~~~~~~~~~~ 419 (1675)
.+-++.....+|.|-+.-|=.++|.-+.++....+ +.+. +-|| ....|-.+-+.... +.
T Consensus 177 ~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~-----~~l~----~fr~--------l~~~lV~iLk~l~~----~~ 235 (866)
T KOG1062|consen 177 VEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISP-----DALS----YFRD--------LVPSLVKILKQLTN----SG 235 (866)
T ss_pred HHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCH-----HHHH----HHHH--------HHHHHHHHHHHHhc----CC
Confidence 45677888999999999999998888877655543 2221 1111 22223333332211 11
Q ss_pred cch-hccccchHHHhhhhccCCCCchhHHHHhhccCcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 000318 420 INQ-NEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQ 498 (1675)
Q Consensus 420 ~~~-~~~~wIP~~IL~~~Y~nd~~~~lVE~vL~e~LlP~~~~~~~R~~~ll~l~~~LD~~~~kal~~il~~k~~l~~~~~ 498 (1675)
... -.+..||+=.|++ |.-|++.+++.-|+.+...+..+|.+..+
T Consensus 236 yspeydv~gi~dPFLQi----------------------------~iLrlLriLGq~d~daSd~M~DiLaqvat------ 281 (866)
T KOG1062|consen 236 YSPEYDVHGISDPFLQI----------------------------RILRLLRILGQNDADASDLMNDILAQVAT------ 281 (866)
T ss_pred CCCccCccCCCchHHHH----------------------------HHHHHHHHhcCCCccHHHHHHHHHHHHHh------
Confidence 111 1244444444432 66788888888888888887777765433
Q ss_pred HHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCch---HHHHHHHHHHhhccHHHHH-HHHHHhcC-CCCHHHHHHHHH
Q 000318 499 RYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPA---KAEENFLILDQLKDANVWK-ILMNLLDS-NTSFDQAFTGRD 573 (1675)
Q Consensus 499 ~~l~l~~~~~~~d~~ei~~kL~~~i~~Ls~~fPDp~---Ka~e~L~kf~klnD~Ri~k-LLk~~idp-~td~~t~~~a~k 573 (1675)
..+...-.-.+-|-.|++-|....|++. .|...|-+|-.=.|.++.+ .|..++.. +.+...+..=+.
T Consensus 282 --------ntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~ 353 (866)
T KOG1062|consen 282 --------NTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRS 353 (866)
T ss_pred --------cccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHH
Confidence 0111111112234555666666666654 4555566666545665543 23333222 233333333355
Q ss_pred HHHHHhcCCCc-h-HHHHHHHHHhhhccccChhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccH-HHH
Q 000318 574 DLLKILGAKHR-L-YDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE-EEL 650 (1675)
Q Consensus 574 ELlkkL~~~~~-~-~d~l~~Ll~R~S~li~Nks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v-~~L 650 (1675)
-++-.|.++-. + ..++. .++.++|.+||..+++++ |..+-.. ++-|++.. ..+
T Consensus 354 tIleCL~DpD~SIkrralE-----Ls~~lvn~~Nv~~mv~eL------------------l~fL~~~-d~~~k~~~as~I 409 (866)
T KOG1062|consen 354 TILECLKDPDVSIKRRALE-----LSYALVNESNVRVMVKEL------------------LEFLESS-DEDFKADIASKI 409 (866)
T ss_pred HHHHHhcCCcHHHHHHHHH-----HHHHHhccccHHHHHHHH------------------HHHHHhc-cHHHHHHHHHHH
Confidence 55555655421 1 11222 456688888888877643 3333333 44444432 333
Q ss_pred HHHHhh---ccccchHhHHHHHHHhhcchhhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhc
Q 000318 651 VNLLKE---ENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAIT 714 (1675)
Q Consensus 651 i~lL~~---~~~~~~~~aLkiLak~~k~~~e~~~~~~s~l~~~L~~lal~GtpkqAKyAvr~Laa~~ 714 (1675)
+.+.+. ++-.-...++++|..+|.++++. ...-|-++.-+|.+..=+|+++-|.+..
T Consensus 410 ~~laEkfaP~k~W~idtml~Vl~~aG~~V~~d-------v~~nll~LIa~~~~e~~~y~~~rLy~a~ 469 (866)
T KOG1062|consen 410 AELAEKFAPDKRWHIDTMLKVLKTAGDFVNDD-------VVNNLLRLIANAFQELHEYAVLRLYLAL 469 (866)
T ss_pred HHHHHhcCCcchhHHHHHHHHHHhcccccchh-------hHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 333332 22233466888888888776544 3344566777777777778888876433
No 14
>PRK09687 putative lyase; Provisional
Probab=97.31 E-value=0.0016 Score=76.99 Aligned_cols=129 Identities=16% Similarity=0.069 Sum_probs=99.4
Q ss_pred hhhhhhccc-ccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCCh
Q 000318 262 GVVPYLTGE-LLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADA 340 (1675)
Q Consensus 262 ~ViPqLe~E-L~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~ 340 (1675)
.++|.|..- +...+..+|..|+..||.+-.. +. ..-+.+...+..-..|.++.||...+...+.| . .
T Consensus 90 ~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~-~~---~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----~----~ 157 (280)
T PRK09687 90 NVFNILNNLALEDKSACVRASAINATGHRCKK-NP---LYSPKIVEQSQITAFDKSTNVRFAVAFALSVI----N----D 157 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhccccc-cc---ccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc----C----C
Confidence 455666655 4567899999999999998432 21 11234556677778899999999999887642 1 1
Q ss_pred HHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000318 341 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1675)
Q Consensus 341 ~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~Vs~elL~~laeR~RDKK~~VRkeAm~~La~L 407 (1675)
.+.++.|...|.|+|..||..|+.+++.+.. -+...+..|...+.|....||..|+.+||++
T Consensus 158 ~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~-----~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 EAAIPLLINLLKDPNGDVRNWAAFALNSNKY-----DNPDIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 3688999999999999999999999987622 2446677788889999999999999999984
No 15
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.2 Score=64.72 Aligned_cols=130 Identities=15% Similarity=0.201 Sum_probs=93.0
Q ss_pred ccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhh
Q 000318 271 LLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDR 350 (1675)
Q Consensus 271 L~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~r 350 (1675)
|.+.....-+.|.+-+=-|++. |-+... +|-+-.+-..-++++|+..+-=+.-+.-..+|+..+ -=+..+++-
T Consensus 44 LdSnkd~~KleAmKRIia~iA~-G~dvS~----~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL--LSIntfQk~ 116 (968)
T KOG1060|consen 44 LDSNKDSLKLEAMKRIIALIAK-GKDVSL----LFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL--LSINTFQKA 116 (968)
T ss_pred HhccccHHHHHHHHHHHHHHhc-CCcHHH----HHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee--eeHHHHHhh
Confidence 5567777777787665555554 434444 455555556667888887765555554556776432 236899999
Q ss_pred hCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000318 351 LLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1675)
Q Consensus 351 L~D~DEkVR~aaV~ai~~la~~~l~~Vs~elL~~laeR~RDKK~~VRkeAm~~La~LY~~ 410 (1675)
|.|+...+|.-|..++..+-.. .|-.=+|.++.+-++|-.+-||+.|..++-+||+.
T Consensus 117 L~DpN~LiRasALRvlSsIRvp---~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL 173 (968)
T KOG1060|consen 117 LKDPNQLIRASALRVLSSIRVP---MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL 173 (968)
T ss_pred hcCCcHHHHHHHHHHHHhcchh---hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC
Confidence 9999999999988887554332 23333577899999999999999999999999995
No 16
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.02 E-value=2.8 Score=57.04 Aligned_cols=437 Identities=19% Similarity=0.187 Sum_probs=216.5
Q ss_pred HHHHHHHHHhhcchhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCC--CCCc---hhhcHHHHHHHHhcccCCChhH
Q 000318 245 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP--GSAN---NEQFHSVFSEFLKRLTDRIVAV 319 (1675)
Q Consensus 245 ~h~Li~eL~~~~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~--~s~~---a~~y~~lw~~fL~R~~D~s~~V 319 (1675)
.-..+.+|-..+|.++..=+..|-.-|..+.-..|-..++.+|.|-..- +.+. .++-++
T Consensus 295 v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~---------------- 358 (1251)
T KOG0414|consen 295 VGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRD---------------- 358 (1251)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHH----------------
Confidence 4568899999999999998888888899999999999999999987642 1111 111122
Q ss_pred HHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCCCCH----HHHHHHHHhhccCChh
Q 000318 320 RMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV----ETVKLVAERLRDKSVL 395 (1675)
Q Consensus 320 R~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~Vs~----elL~~laeR~RDKK~~ 395 (1675)
++++.|.+|+.|.-.-||..|.+++..+-. .+.+|. +++..++.|+-||..-
T Consensus 359 ----------------------~~le~l~erl~Dvsa~vRskVLqv~~~l~~--~~s~p~~~~~eV~~la~grl~DkSsl 414 (1251)
T KOG0414|consen 359 ----------------------ELLELLRERLLDVSAYVRSKVLQVFRRLFQ--QHSIPLGSRTEVLELAIGRLEDKSSL 414 (1251)
T ss_pred ----------------------HHHHHHHHHhhcccHHHHHHHHHHHHHHHH--ccCCCccHHHHHHHHHhcccccccHH
Confidence 244444555555555555555554433221 222222 3455556666666666
Q ss_pred HHHHHHHHHHHHHHHH------------------hhhccC--CCcchhccccchHHHhhhhccCCCCchhHHHHhhccCc
Q 000318 396 VKRYTMERLADIFRGC------------------CLRNFN--GSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLF 455 (1675)
Q Consensus 396 VRkeAm~~La~LY~~~------------------~~~~~~--~~~~~~~~~wIP~~IL~~~Y~nd~~~~lVE~vL~e~Ll 455 (1675)
||+.||..+..+-..+ ....+. .+...-.=..+++--.. -|..-.. .++..=+.+--
T Consensus 415 VRk~Ai~Ll~~~L~~~Pfs~~~~~~~~~~~~E~~~~~~e~~~e~t~~l~~e~~~~~~s~-n~~~vi~--~~~~~~~~~~~ 491 (1251)
T KOG0414|consen 415 VRKNAIQLLSSLLDRHPFSSELRSDDLRAKLEKELQKLEEELESTEHLEEEEMTSNRSE-NVKGVIE--DAEKDSTTEKN 491 (1251)
T ss_pred HHHHHHHHHHHHHhcCCchhhhcchhhhhhHHHHHHhhhhhcccccccchhhccchhhh-hccccee--echhhhhhhcc
Confidence 6666666666654432 211110 00000000000000000 0000000 00000000001
Q ss_pred CCCCCHHH--HHHHHHHHHhcCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcCCCcHHHHHHHHHHHHHHHh
Q 000318 456 PTGFSVKD--RVRHWVRIFSGFDRI----EMKALEKILEQKQRLQQEMQRYLSLR-QMHQDGDAPEIQKKILFCFRVMSR 528 (1675)
Q Consensus 456 P~~~~~~~--R~~~ll~l~~~LD~~----~~kal~~il~~k~~l~~~~~~~l~l~-~~~~~~d~~ei~~kL~~~i~~Ls~ 528 (1675)
|....... ---.+..-....+.. ..+++.+++...-++...|.+-+... +..-.+...+|+..|... .++.
T Consensus 492 q~~ss~~~~~e~~~~~~~~~s~~~~~~i~q~~~~vq~l~d~~sf~~~ms~~~~ii~~ll~s~t~teV~E~Idfl--~~c~ 569 (1251)
T KOG0414|consen 492 QLESSDNKQEEHCLLENEVESVPAENEIMQLKALVQFLEDAISFSDEMSEAIPIISQLLFSKTTTEVKEAIDFL--VRCK 569 (1251)
T ss_pred ccccccccchhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH--HHHH
Confidence 11000000 000000000111111 11233333333333334444433331 222234556676666543 3345
Q ss_pred hcCCchHHHHHHHHHHhh---ccHHHHHHHHHH-------hcCCCCHHHHHHHHHHHHHHhcC-----CCchHHHHHHHH
Q 000318 529 SFAEPAKAEENFLILDQL---KDANVWKILMNL-------LDSNTSFDQAFTGRDDLLKILGA-----KHRLYDFLSTLS 593 (1675)
Q Consensus 529 ~fPDp~Ka~e~L~kf~kl---nD~Ri~kLLk~~-------idp~td~~t~~~a~kELlkkL~~-----~~~~~d~l~~Ll 593 (1675)
.| +..-|+.++++.-.| +|..++.++..| .+++..-.+.....+-|++.+-+ .+++-+.+..|.
T Consensus 570 ~F-~I~gae~~irkMl~LVWskd~~i~e~v~~ayk~l~~~~~~n~~~~e~~~ia~NL~~l~~~~s~~d~~slE~vl~~lv 648 (1251)
T KOG0414|consen 570 QF-GIDGAEFGIRKMLPLVWSKDKEIREAVENAYKQLYFRPDGNSKASEASSIAQNLSKLLIDASIGDLTSLEEVLCELV 648 (1251)
T ss_pred Hh-CCCcHHHHHHHHhhhhhCCCccHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence 55 455566777776654 566666655555 33444444443333344444322 233333333333
Q ss_pred HhhhccccChhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccccchHhHHHHHHHhh
Q 000318 594 MKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAG 673 (1675)
Q Consensus 594 ~R~S~li~Nks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v~~Li~lL~~~~~~~~~~aLkiLak~~ 673 (1675)
+--.|+..-|..|.......+.+.......-++.+|-++|...|++-..+.+.|+++=-. .+.....+|..++.++
T Consensus 649 ---~~~~Id~~Vi~~Lw~~ftlq~~~~~~~q~~~sl~iL~M~s~s~~~Iv~~~~~~lv~iglg-~p~l~~~~L~~~s~i~ 724 (1251)
T KOG0414|consen 649 ---ARGYIDAAVINKLWEIFTLQKKGTTNEQSRGSLIILGMASRSKPSIVLANLDLLVQIGLG-EPRLAVDVLARYSNIV 724 (1251)
T ss_pred ---hCCCccHHHHHHHHHHHHHHhccCchhhhccceeehhhhhccChhhhhhhhHHHHHhccC-cHHHHHHHHHHHHHhh
Confidence 345678888888888764433332211223467899999999999999998887765332 3555666777777654
Q ss_pred c-chhh----h--h-hcccchHHHHHHHHhhcCC-------hHHHHHHHHHHHhhcCCCccchHHHHHHHHHHh
Q 000318 674 G-TIRE----Q--L-AATSSSVDLLLERLCLEGS-------RRQAKYAVHALAAITKDDGLKSLSVLYKRLVDM 732 (1675)
Q Consensus 674 k-~~~e----~--~-~~~~s~l~~~L~~lal~Gt-------pkqAKyAvr~Laa~~~~~~~~~~~~L~~~L~~~ 732 (1675)
- .+.+ . + .+....+..+|+.+-..|- -..|-.|+.+|..+....+.. ...|+..+.++
T Consensus 725 ~~r~~~~~~~r~~f~~~~~~~L~k~L~~l~~~~~~~~d~~~~~~~e~ais~Iy~is~~Pe~l-a~~li~~~~~~ 797 (1251)
T KOG0414|consen 725 DPRKLEDAYSRPKFNLEQEEVLFKILEKLLFFEFMKADDDWFGVAEVAISAIYSISMLPEVL-ATQLIRKLLKQ 797 (1251)
T ss_pred cccccchhhccccccCchHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHhcChHHH-HHHHHHHHHHH
Confidence 1 1110 0 1 1223467777887777642 156777888888887765432 22344444443
No 17
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.01 E-value=0.058 Score=73.71 Aligned_cols=262 Identities=16% Similarity=0.145 Sum_probs=142.8
Q ss_pred hhhcCCCcchhHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhheeccC
Q 000318 63 VLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDL 142 (1675)
Q Consensus 63 ~LL~HkD~~Vr~~vAcCLadIlRI~APdAPytd~qLkdIF~l~v~qf~~L~d~~~p~f~q~~~LLE~LA~vks~vl~~DL 142 (1675)
.+|++.|.+||..++-.|.++- | ..++..++..| .|++.. -+...++.|.++ .-.+
T Consensus 628 ~~L~D~d~~VR~~Av~~L~~~~----~---------~~~~~~L~~aL---~D~d~~---VR~~Aa~aL~~l-----~~~~ 683 (897)
T PRK13800 628 PYLADPDPGVRRTAVAVLTETT----P---------PGFGPALVAAL---GDGAAA---VRRAAAEGLREL-----VEVL 683 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhhhc----c---------hhHHHHHHHHH---cCCCHH---HHHHHHHHHHHH-----Hhcc
Confidence 4568999999999999999874 1 23455555444 454332 233555555543 1122
Q ss_pred CchHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHhhh
Q 000318 143 ECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKND----TARRLAMNVIEQCAG 218 (1675)
Q Consensus 143 ~~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~vp~~vLd~IL~~l~~~~~~----~a~~lA~~v~~~~~d 218 (1675)
++...+..+++. ....|.....+.|..+-.. . ...++..+...... +++.|+. . +
T Consensus 684 ~~~~~L~~~L~~--------~d~~VR~~A~~aL~~~~~~--~-----~~~l~~~L~D~d~~VR~~Av~aL~~-----~-~ 742 (897)
T PRK13800 684 PPAPALRDHLGS--------PDPVVRAAALDVLRALRAG--D-----AALFAAALGDPDHRVRIEAVRALVS-----V-D 742 (897)
T ss_pred CchHHHHHHhcC--------CCHHHHHHHHHHHHhhccC--C-----HHHHHHHhcCCCHHHHHHHHHHHhc-----c-c
Confidence 343444444322 2346776667777664311 1 12344444322211 2233332 0 1
Q ss_pred hhHHHHHHHHHHhhcCCCCCCCCcch--HHHHHHHHHhhcchhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCCCCC
Q 000318 219 KLEAGIKQFLVSSMSGDSRPGHSHID--YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA 296 (1675)
Q Consensus 219 kL~~~I~qyf~~il~~~~~~~~~~~~--~h~Li~eL~~~~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~ 296 (1675)
.. +.+... +..+ +..++ +-.-|-.+..-.+.. +|.|..-|..++..+|..|+..||.+-..+
T Consensus 743 ~~-~~l~~~----l~D~----~~~VR~~aa~aL~~~~~~~~~~----~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~--- 806 (897)
T PRK13800 743 DV-ESVAGA----ATDE----NREVRIAVAKGLATLGAGGAPA----GDAVRALTGDPDPLVRAAALAALAELGCPP--- 806 (897)
T ss_pred Cc-HHHHHH----hcCC----CHHHHHHHHHHHHHhccccchh----HHHHHHHhcCCCHHHHHHHHHHHHhcCCcc---
Confidence 11 122211 1111 11111 112233333222211 344455566678888888888888773321
Q ss_pred chhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCC
Q 000318 297 NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS 376 (1675)
Q Consensus 297 ~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~ 376 (1675)
.+....+.-..|.++.||...+++...+ +. .+.+..|...|.|++..||.+|+.++..+ .
T Consensus 807 ------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l----~~----~~a~~~L~~~L~D~~~~VR~~A~~aL~~~------~ 866 (897)
T PRK13800 807 ------DDVAAATAALRASAWQVRQGAARALAGA----AA----DVAVPALVEALTDPHLDVRKAAVLALTRW------P 866 (897)
T ss_pred ------hhHHHHHHHhcCCChHHHHHHHHHHHhc----cc----cchHHHHHHHhcCCCHHHHHHHHHHHhcc------C
Confidence 1112233445677888888888887641 11 24667788888888888888888887664 2
Q ss_pred CCHHHHHHHHHhhccCChhHHHHHHHHHH
Q 000318 377 IPVETVKLVAERLRDKSVLVKRYTMERLA 405 (1675)
Q Consensus 377 Vs~elL~~laeR~RDKK~~VRkeAm~~La 405 (1675)
.+......|...+.|....||++|...|.
T Consensus 867 ~~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 867 GDPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 34456667778888888888888888775
No 18
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=97.00 E-value=0.0014 Score=58.69 Aligned_cols=44 Identities=20% Similarity=0.392 Sum_probs=39.8
Q ss_pred ccCceEEEecCCCCceEEEEEEEecCCCCeeEEEccC-CcceeeecC
Q 000318 1376 LIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDD-EDVEVLRLD 1421 (1675)
Q Consensus 1376 lvG~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdD-Gd~E~l~L~ 1421 (1675)
-+|..|.+.| .|..||.|+|+.+++. +...|.|.| |..+++...
T Consensus 4 ~~G~~~~a~~-~d~~wyra~I~~~~~~-~~~~V~f~D~G~~~~v~~~ 48 (57)
T smart00333 4 KVGDKVAARW-EDGEWYRARIIKVDGE-QLYEVFFIDYGNEEVVPPS 48 (57)
T ss_pred CCCCEEEEEe-CCCCEEEEEEEEECCC-CEEEEEEECCCccEEEeHH
Confidence 4899999999 9999999999999988 889999988 999988743
No 19
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=2 Score=55.23 Aligned_cols=174 Identities=18% Similarity=0.184 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHhcccc--cccHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCCCCCCCC
Q 000318 167 VLSSMQTIMIVLLEESE--DIQEDLLVILLSALGRNK---NDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHS 241 (1675)
Q Consensus 167 V~~~m~~IL~~vI~Ese--~vp~~vLd~IL~~l~~~~---~~~a~~lA~~v~~~~~dkL~~~I~qyf~~il~~~~~~~~~ 241 (1675)
+......|+++.|-... .-.+++|..+...|..+. ...|+.--..||+..++.+...+.. .
T Consensus 105 lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~--------------r 170 (885)
T KOG2023|consen 105 LIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLT--------------R 170 (885)
T ss_pred HHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhccc--------------C
Confidence 33344444444443333 356788888888775432 2378877788998888766654320 0
Q ss_pred cchHHHHHHHHHhhcchhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHH
Q 000318 242 HIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRM 321 (1675)
Q Consensus 242 ~~~~h~Li~eL~~~~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~ 321 (1675)
. |-..||-+=.-.++..+.+|..|+..+-..+-....++.-.-..--....-+.+|.++.||.
T Consensus 171 p-----------------l~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk 233 (885)
T KOG2023|consen 171 P-----------------LNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRK 233 (885)
T ss_pred c-----------------hHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHH
Confidence 0 01112333333456789999999999998776654333322222222344567999999999
Q ss_pred HHHHHhHHHHhcCCCC--CChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhh
Q 000318 322 SVLEHVKSCLLTDPSR--ADAPQILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1675)
Q Consensus 322 ~~Ve~~~~iL~~~p~~--~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~ 371 (1675)
.+..+...+|.-+|++ .-...|++++..|-.|+||.|-++||+-.-.+|.
T Consensus 234 ~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~ae 285 (885)
T KOG2023|consen 234 NVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAE 285 (885)
T ss_pred HHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence 9999999988888763 2235899999999999999999999998877764
No 20
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.81 E-value=0.039 Score=61.06 Aligned_cols=94 Identities=15% Similarity=0.161 Sum_probs=84.6
Q ss_pred ChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChh
Q 000318 316 IVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVL 395 (1675)
Q Consensus 316 s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~Vs~elL~~laeR~RDKK~~ 395 (1675)
+|.||.-++-..+++...+|. .....++.+..+|.|+++.||..|+.++..+....+-.+...++..+...+.|..+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~ 78 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPE 78 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHH
Confidence 478999999999999998885 345788999999999999999999999999998888888888878888899999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 000318 396 VKRYTMERLADIFRGC 411 (1675)
Q Consensus 396 VRkeAm~~La~LY~~~ 411 (1675)
||..|...+..+....
T Consensus 79 Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 79 IRSLARSFFSELLKKR 94 (178)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998874
No 21
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=96.75 E-value=0.0029 Score=54.62 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=38.4
Q ss_pred CceEEEecCCCCceEEEEEEEecCCCCeeEEEccC-CcceeeecC
Q 000318 1378 GYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDD-EDVEVLRLD 1421 (1675)
Q Consensus 1378 G~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdD-Gd~E~l~L~ 1421 (1675)
|..|-+.|+.|..||.|+|...++ .+.-.|.|.| |..|.+.+.
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~-~~~~~V~f~DyG~~~~v~~~ 44 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILS-DGKVEVFFVDYGNTEVVPLS 44 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECC-CCcEEEEEEcCCCcEEEeHH
Confidence 678999999999999999999998 7778999977 999988754
No 22
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=2.7 Score=53.34 Aligned_cols=431 Identities=16% Similarity=0.160 Sum_probs=229.9
Q ss_pred HHHHHHHHHh-hhhhHHHHHHHHHHhhcCCCCCC-CCcc-----hHHHHHHHHHhhcchhhhhhhhhhcccccCCchHHH
Q 000318 207 RLAMNVIEQC-AGKLEAGIKQFLVSSMSGDSRPG-HSHI-----DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTR 279 (1675)
Q Consensus 207 ~lA~~v~~~~-~dkL~~~I~qyf~~il~~~~~~~-~~~~-----~~h~Li~eL~~~~P~lL~~ViPqLe~EL~sed~~~R 279 (1675)
++.+++++.+ .+++...|.+...+.++...... +.++ -++-|=.+--.+.-.++.+|++.+ ...|..+|
T Consensus 26 k~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf----~D~d~~vR 101 (675)
T KOG0212|consen 26 KLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCF----SDQDSQVR 101 (675)
T ss_pred HHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhc----cCccceee
Confidence 3444444433 36777777777777665432211 1111 122222222223334455555554 44788899
Q ss_pred HHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHH---HHHhHHHHhcCCCCCChHHHHHHHHhhhCCchh
Q 000318 280 LKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSV---LEHVKSCLLTDPSRADAPQILTALCDRLLDFDE 356 (1675)
Q Consensus 280 l~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~---Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DE 356 (1675)
--|.+.+=.+-..-..++..-++.+|....+=+.|.+..||-.. -...++|.......-..++++.-|.+|+.+.+.
T Consensus 102 yyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~ 181 (675)
T KOG0212|consen 102 YYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINP 181 (675)
T ss_pred eHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCc
Confidence 99988877666544456788889999999999999999998652 233444444333222356899999999999999
Q ss_pred HHHHHHHHHHHHhhh-hhcCCC--CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccC-C-----Cc------c
Q 000318 357 NVRKQVVAVICDVAC-HALNSI--PVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFN-G-----SI------N 421 (1675)
Q Consensus 357 kVR~aaV~ai~~la~-~~l~~V--s~elL~~laeR~RDKK~~VRkeAm~~La~LY~~~~~~~~~-~-----~~------~ 421 (1675)
.+|..+|.-+.-+.. ..++-+ -.+++.-|..=+-|-...||.-+=+.|+.+-+....+.+. + +. .
T Consensus 182 ~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~s 261 (675)
T KOG0212|consen 182 MTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQS 261 (675)
T ss_pred hHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccC
Confidence 999999988865532 111111 1244555566678899999999999999988876544322 0 00 0
Q ss_pred ------hhccccchHHHhhhhccCCCCchhHHHHhhccCcCCCCCHHHH----HHHHHH--HHhcCCHHHHH---HHHHH
Q 000318 422 ------QNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDR----VRHWVR--IFSGFDRIEMK---ALEKI 486 (1675)
Q Consensus 422 ------~~~~~wIP~~IL~~~Y~nd~~~~lVE~vL~e~LlP~~~~~~~R----~~~ll~--l~~~LD~~~~k---al~~i 486 (1675)
...+.||-.- .++.....-..-.-+++.++|.-.+.++. ....+. +.+-++....+ .+..|
T Consensus 262 s~~~iq~~al~Wi~ef----V~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~i 337 (675)
T KOG0212|consen 262 SEPEIQLKALTWIQEF----VKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSI 337 (675)
T ss_pred CcHHHHHHHHHHHHHH----hcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHH
Confidence 0113444211 11211111111112245678875444332 222222 11111221111 11111
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHH---hhcCCchHHHHH--HHHH-HhhccH------HHHHH
Q 000318 487 LEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMS---RSFAEPAKAEEN--FLIL-DQLKDA------NVWKI 554 (1675)
Q Consensus 487 l~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kL~~~i~~Ls---~~fPDp~Ka~e~--L~kf-~klnD~------Ri~kL 554 (1675)
-..+++|+.- +. +.+++. +.+|+. ..+|...-...+ +..+ ..|-|+ +...+
T Consensus 338 -------i~vl~~~l~~-------~~--~~tri~-~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~l 400 (675)
T KOG0212|consen 338 -------IEVLTKYLSD-------DR--EETRIA-VLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSL 400 (675)
T ss_pred -------HHHHHHHhhc-------ch--HHHHHH-HHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHH
Confidence 1223333321 21 222333 334543 445544322111 1111 223222 22223
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhccccChhHHHHHHHHHHhhcccchhhhHHHHHHHHHH
Q 000318 555 LMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGI 634 (1675)
Q Consensus 555 Lk~~idp~td~~t~~~a~kELlkkL~~~~~~~d~l~~Ll~R~S~li~Nks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~ 634 (1675)
+..++....++ ..++....|+.+-.+..-+.+.--.|..|.-++.+|.++|=.-+..+-.. ..|-.+++..-+.|+.
T Consensus 401 la~i~~s~~~~-~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~ILe~--e~nl~FAstMV~~Ln~ 477 (675)
T KOG0212|consen 401 LASICSSSNSP-NLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADILER--EENLKFASTMVQALNT 477 (675)
T ss_pred HHHHhcCcccc-cHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHHhc--cccchHHHHHHHHHHh
Confidence 33333333322 22444455555544444455555668889999999999997666544332 3344567777899999
Q ss_pred HHhhCCcCccccHHHHHHHHhh-ccccchHhHHHHHHH
Q 000318 635 LARFSPLLLGGTEEELVNLLKE-ENEIIKEGILHVLAK 671 (1675)
Q Consensus 635 IS~~~P~lFk~~v~~Li~lL~~-~~~~~~~~aLkiLak 671 (1675)
|--+.|++| +|-+.|++ .++.. ......|++
T Consensus 478 iLlTStELf-----~LR~~Lk~lsn~es-~~lF~cLy~ 509 (675)
T KOG0212|consen 478 ILLTSTELF-----QLRNKLKDLSNEES-QNLFCCLYR 509 (675)
T ss_pred hhcccHHHH-----HHHHHHHhccChhh-hHHHHHHHH
Confidence 999999999 56666665 22221 234455553
No 23
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=96.69 E-value=0.0035 Score=57.16 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=33.6
Q ss_pred ccCceEEEecCCCCceEEEEEEEecCCCCeeEEEccC
Q 000318 1376 LIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDD 1412 (1675)
Q Consensus 1376 lvG~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdD 1412 (1675)
-+|..|.+||+.+..||.|+|+.+++ .+++.|.|++
T Consensus 4 ~~G~~Ve~~~~~~~~W~~a~V~~~~~-~~~~~V~~~~ 39 (61)
T smart00743 4 KKGDRVEVFSKEEDSWWEAVVTKVLG-DGKYLVRYLT 39 (61)
T ss_pred CCCCEEEEEECCCCEEEEEEEEEECC-CCEEEEEECC
Confidence 48999999999999999999999998 6789999987
No 24
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.66 E-value=2 Score=55.54 Aligned_cols=125 Identities=23% Similarity=0.310 Sum_probs=91.6
Q ss_pred ccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhh
Q 000318 271 LLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDR 350 (1675)
Q Consensus 271 L~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~r 350 (1675)
+.+.+-.+|-...++|..+....+.-=-.-|.-+-...+.|..|+.|.||++.|.+... +.-.|. ++.-.+...|..-
T Consensus 94 ~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsr-lQ~d~~-dee~~v~n~l~~l 171 (892)
T KOG2025|consen 94 TESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSR-LQGDPK-DEECPVVNLLKDL 171 (892)
T ss_pred ccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHH-HhcCCC-CCcccHHHHHHHH
Confidence 45788999999999999988743211122344455588999999999999999999866 332332 3334666666654
Q ss_pred -hCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 000318 351 -LLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLAD 406 (1675)
Q Consensus 351 -L~D~DEkVR~aaV~ai~~la~~~l~~Vs~elL~~laeR~RDKK~~VRkeAm~~La~ 406 (1675)
-+||.+.||.+|.-.| .++..++-.+.+|+||=+..+|+-+-.++..
T Consensus 172 iqnDpS~EVRRaaLsnI---------~vdnsTlp~IveRarDV~~anRrlvY~r~lp 219 (892)
T KOG2025|consen 172 IQNDPSDEVRRAALSNI---------SVDNSTLPCIVERARDVSGANRRLVYERCLP 219 (892)
T ss_pred HhcCCcHHHHHHHHHhh---------ccCcccchhHHHHhhhhhHHHHHHHHHHhhh
Confidence 4899999999976665 4566778888999999999999976554443
No 25
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.60 E-value=2.3 Score=56.47 Aligned_cols=542 Identities=17% Similarity=0.162 Sum_probs=267.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhhcC--C-CCCCCCcchH-HHHHHHHHhhcchhhhhhhhhhcccccC----Cc
Q 000318 204 TARRLAMNVIEQCAGKLEAGIKQFLVSSMSG--D-SRPGHSHIDY-HEVIYDVYRCSPQILSGVVPYLTGELLT----DQ 275 (1675)
Q Consensus 204 ~a~~lA~~v~~~~~dkL~~~I~qyf~~il~~--~-~~~~~~~~~~-h~Li~eL~~~~P~lL~~ViPqLe~EL~s----ed 275 (1675)
.++.+-..+++...+-|..++-.....+++. | +..++..+.+ --+..-|-.+.|....+-+|-|..-+.+ .=
T Consensus 454 ~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~f 533 (1233)
T KOG1824|consen 454 GCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPF 533 (1233)
T ss_pred hHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCch
Confidence 6677888888887777777766555555442 2 1111112222 2333445566777776666555433321 11
Q ss_pred hHHHHHHHHHHHHhhcC-----C--CCCchhhcHHHHHHHHhcc--cCCChhHHHHHHHHhHHHHhcCCC--CCChHHHH
Q 000318 276 LDTRLKAVGLVGDLFAV-----P--GSANNEQFHSVFSEFLKRL--TDRIVAVRMSVLEHVKSCLLTDPS--RADAPQIL 344 (1675)
Q Consensus 276 ~~~Rl~At~llG~mfs~-----~--~s~~a~~y~~lw~~fL~R~--~D~s~~VR~~~Ve~~~~iL~~~p~--~~~~~ei~ 344 (1675)
-.+--.|..+.+++... + +.++......+|.+-|.|+ +|.+-+||...+.+.++++.+--+ +.+.+-++
T Consensus 534 yKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L 613 (1233)
T KOG1824|consen 534 YKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTL 613 (1233)
T ss_pred HhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 22222333333333321 1 3455566678888888876 799999999999999998887533 23445678
Q ss_pred HHHHhhhCCchhHHHHHHHHHHHHhhhhhcC----CCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCc
Q 000318 345 TALCDRLLDFDENVRKQVVAVICDVACHALN----SIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSI 420 (1675)
Q Consensus 345 ~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~----~Vs~elL~~laeR~RDKK~~VRkeAm~~La~LY~~~~~~~~~~~~ 420 (1675)
..|.+||. .|--|+.||+|+|.++...++ .+-.+++..++.=+|--....|.+++..+-+|-..|...+. ..
T Consensus 614 ~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~--~~ 689 (1233)
T KOG1824|consen 614 PILLERLG--NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIP--AE 689 (1233)
T ss_pred HHHHHHHh--chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--HH
Confidence 88999985 578899999999999875543 33446777777777766667888887777777777632211 11
Q ss_pred c-hhccccchHHHhhhhccCCCCchhHHHHhhccCc--CCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHH
Q 000318 421 N-QNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLF--PTGFSVKDRVRHWVRIFSG-----FDRIEMKALEKILEQKQR 492 (1675)
Q Consensus 421 ~-~~~~~wIP~~IL~~~Y~nd~~~~lVE~vL~e~Ll--P~~~~~~~R~~~ll~l~~~-----LD~~~~kal~~il~~k~~ 492 (1675)
. ..-+..||+-|- ..|.+.-..--.+..+++ |...-.+-+-..+-.+.+. +-..+..++..++..-..
T Consensus 690 ~~e~vL~el~~Lis----esdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~ 765 (1233)
T KOG1824|consen 690 LLEAVLVELPPLIS----ESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVI 765 (1233)
T ss_pred HHHHHHHHhhhhhh----HHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHh
Confidence 1 112344444332 223221111111112221 1110011111111111111 122222222222111111
Q ss_pred HHHHHHHHHHHHhhhc--------CCCcHHHHHHHHHHHHHHHhhcCCchHH--HHHHHHHH--hhccH-HHHHHHHHH-
Q 000318 493 LQQEMQRYLSLRQMHQ--------DGDAPEIQKKILFCFRVMSRSFAEPAKA--EENFLILD--QLKDA-NVWKILMNL- 558 (1675)
Q Consensus 493 l~~~~~~~l~l~~~~~--------~~d~~ei~~kL~~~i~~Ls~~fPDp~Ka--~e~L~kf~--klnD~-Ri~kLLk~~- 558 (1675)
-+..-..|..+....+ ++-....--.+.+|+..|+..+|+-.++ ..-.+-|. +.+|+ ++|-+|..=
T Consensus 766 t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGE 845 (1233)
T KOG1824|consen 766 TKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGE 845 (1233)
T ss_pred cCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhh
Confidence 0000011222211111 1112223334788899999999965553 33344444 34443 445444221
Q ss_pred hcCC--CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhccccC--hhHHHHHHHHHHhhcccchhhhHHHHHHHHHH
Q 000318 559 LDSN--TSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFN--KEHVKEILLEVAAQKSSANAQFMQSCMDILGI 634 (1675)
Q Consensus 559 idp~--td~~t~~~a~kELlkkL~~~~~~~d~l~~Ll~R~S~li~N--ks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~ 634 (1675)
++.. .++... ...-++.-++.+ ..|....-.|-...+-.+ ...+|.|+..+... .. .++ ---|-|...
T Consensus 846 lgr~~~~s~~~e--~~~~iieaf~sp--~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sq--pk-~Qy-LLLhSlkev 917 (1233)
T KOG1824|consen 846 LGRRKDLSPQNE--LKDTIIEAFNSP--SEDVKSAASYALGSLAVGNLPKYLPFILEQIESQ--PK-RQY-LLLHSLKEV 917 (1233)
T ss_pred hccCCCCCcchh--hHHHHHHHcCCC--hHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcc--hH-hHH-HHHHHHHHH
Confidence 1111 111110 011122223322 233333333333333331 23467777765422 11 111 112457777
Q ss_pred HHhhCCcCccccHHHHHHHHhhccccchHhHHHHHHHhhcchhhhhhcccchHHHHHHHHhhcCChHH---HHHHHHHHH
Q 000318 635 LARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQ---AKYAVHALA 711 (1675)
Q Consensus 635 IS~~~P~lFk~~v~~Li~lL~~~~~~~~~~aLkiLak~~k~~~e~~~~~~s~l~~~L~~lal~Gtpkq---AKyAvr~La 711 (1675)
|+...+..|+..++.+-.+|...-+..-++.=-+++.|-|.+- -...+++.+.|+.+-..|.+.. +=-||+..
T Consensus 918 i~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~---l~epesLlpkL~~~~~S~a~~~rs~vvsavKfs- 993 (1233)
T KOG1824|consen 918 IVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLV---LIEPESLLPKLKLLLRSEASNTRSSVVSAVKFS- 993 (1233)
T ss_pred HHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHH---hCChHHHHHHHHHHhcCCCcchhhhhhheeeee-
Confidence 9999999999999999999987544344455445555533311 1234578999988887776533 22222221
Q ss_pred hhcCCCccchHHHHHH-HHHHhh---hhcC-CC-chHHHHHHHHHhhcccccccchHHHHHHH
Q 000318 712 AITKDDGLKSLSVLYK-RLVDML---EEKT-HL-PAVLQSLGCIAQTAMPVFETRESEIEEFI 768 (1675)
Q Consensus 712 a~~~~~~~~~~~~L~~-~L~~~L---~~~~-~l-~t~L~sLg~Iaq~aP~vfe~~~~eI~~fI 768 (1675)
+..... .+..+++ .|-+-+ ...+ +. ...|+++-..+.+-|....+--+++...+
T Consensus 994 -isd~p~--~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~L 1053 (1233)
T KOG1824|consen 994 -ISDQPQ--PIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLL 1053 (1233)
T ss_pred -ecCCCC--ccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHH
Confidence 222221 1122222 222222 2211 21 22467777777777766555444444433
No 26
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.47 E-value=0.015 Score=55.81 Aligned_cols=83 Identities=23% Similarity=0.304 Sum_probs=66.2
Q ss_pred HHhcc-cCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHH
Q 000318 308 FLKRL-TDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVA 386 (1675)
Q Consensus 308 fL~R~-~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~Vs~elL~~la 386 (1675)
++... +|.++.||...+.+.+.+ ...++++.|...+.|+|..||.+|+.+++.+. +.+.+..|.
T Consensus 4 L~~~l~~~~~~~vr~~a~~~L~~~--------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-------~~~~~~~L~ 68 (88)
T PF13646_consen 4 LLQLLQNDPDPQVRAEAARALGEL--------GDPEAIPALIELLKDEDPMVRRAAARALGRIG-------DPEAIPALI 68 (88)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHCC--------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-------HHHTHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHc--------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------CHHHHHHHH
Confidence 44555 799999999998888731 13578999999999999999999999998764 345677778
Q ss_pred Hhhcc-CChhHHHHHHHHHH
Q 000318 387 ERLRD-KSVLVKRYTMERLA 405 (1675)
Q Consensus 387 eR~RD-KK~~VRkeAm~~La 405 (1675)
+.+.| ....||..|+..||
T Consensus 69 ~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 69 KLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTC-SSHHHHHHHHHHHH
T ss_pred HHHcCCCcHHHHHHHHhhcC
Confidence 87776 45678999999986
No 27
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=96.40 E-value=6 Score=57.94 Aligned_cols=374 Identities=16% Similarity=0.114 Sum_probs=179.4
Q ss_pred CChhHHHHHHHHhHHHHhcCCCCC---ChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcC----CCCHHHHHHHHH
Q 000318 315 RIVAVRMSVLEHVKSCLLTDPSRA---DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN----SIPVETVKLVAE 387 (1675)
Q Consensus 315 ~s~~VR~~~Ve~~~~iL~~~p~~~---~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~----~Vs~elL~~lae 387 (1675)
...+++...+.+...+...+.+.- .....++.|...|...++.+|..++.+++-++..+-. .+....+-.|.+
T Consensus 416 ~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~ 495 (2102)
T PLN03200 416 ATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQ 495 (2102)
T ss_pred CCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH
Confidence 447899999988877554332210 0012457888889889999999999999888753221 122345667778
Q ss_pred hhccCChhHHHHHHHHHHHHHHHHhhhccCCCcchhccccchHHHhhhhccCCCCchhHHHHhhccCcCCCCCHHHHHHH
Q 000318 388 RLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRH 467 (1675)
Q Consensus 388 R~RDKK~~VRkeAm~~La~LY~~~~~~~~~~~~~~~~~~wIP~~IL~~~Y~nd~~~~lVE~vL~e~LlP~~~~~~~R~~~ 467 (1675)
.++..+..+|++|+..|++|=... .+.......-+-||. |++++-..+.+. .+ .=+..
T Consensus 496 LL~s~~~~iqeeAawAL~NLa~~~----~qir~iV~~aGAIpp-LV~LL~sgd~~~--q~---------------~Aa~A 553 (2102)
T PLN03200 496 LLETGSQKAKEDSATVLWNLCCHS----EDIRACVESAGAVPA-LLWLLKNGGPKG--QE---------------IAAKT 553 (2102)
T ss_pred HHcCCCHHHHHHHHHHHHHHhCCc----HHHHHHHHHCCCHHH-HHHHHhCCCHHH--HH---------------HHHHH
Confidence 888889999999999998874310 000011122355664 555543222210 00 01112
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhc
Q 000318 468 WVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLK 547 (1675)
Q Consensus 468 ll~l~~~LD~~~~kal~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kL~~~i~~Ls~~fPDp~Ka~e~L~kf~kln 547 (1675)
+..+..+-|.... ..++++. . ++.+.++.....++..|...-....-..+. .-
T Consensus 554 L~nLi~~~d~~~I-----------------~~Lv~LL---l-sdd~~~~~~aL~vLgnIlsl~~~~d~~~~g------~~ 606 (2102)
T PLN03200 554 LTKLVRTADAATI-----------------SQLTALL---L-GDLPESKVHVLDVLGHVLSVASLEDLVREG------SA 606 (2102)
T ss_pred HHHHHhccchhHH-----------------HHHHHHh---c-CCChhHHHHHHHHHHHHHhhcchhHHHHHh------hh
Confidence 2222222222211 1122221 1 122222222211222221111000000000 00
Q ss_pred cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhccccChhHHHHHHHHHHhhcccchhhhHHH
Q 000318 548 DANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQS 627 (1675)
Q Consensus 548 D~Ri~kLLk~~idp~td~~t~~~a~kELlkkL~~~~~~~d~l~~Ll~R~S~li~Nks~V~~LL~~v~~~~~~~~~~~~~~ 627 (1675)
+......|-.++...++ ..-..|. .++-.+-..+ .+.. ..++....|+-|+..+... +.....+.
T Consensus 607 ~~ggL~~Lv~LL~sgs~-~ikk~Aa-~iLsnL~a~~--~d~~--------~avv~agaIpPLV~LLss~---~~~v~keA 671 (2102)
T PLN03200 607 ANDALRTLIQLLSSSKE-ETQEKAA-SVLADIFSSR--QDLC--------ESLATDEIINPCIKLLTNN---TEAVATQS 671 (2102)
T ss_pred ccccHHHHHHHHcCCCH-HHHHHHH-HHHHHHhcCC--hHHH--------HHHHHcCCHHHHHHHHhcC---ChHHHHHH
Confidence 00111111122221110 0000111 1111111100 0000 1134445677777766432 11122233
Q ss_pred HHHHHHHHHhhCCc--Cc---cccHHHHHHHHhhccccchHhHHHHHHHhhcchhhhhhcccchHHHHHHHHhhcCChHH
Q 000318 628 CMDILGILARFSPL--LL---GGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQ 702 (1675)
Q Consensus 628 a~eLL~~IS~~~P~--lF---k~~v~~Li~lL~~~~~~~~~~aLkiLak~~k~~~e~~~~~~s~l~~~L~~lal~Gtpkq 702 (1675)
|..|....+...+. ++ .+.+..|+++|...+..+++.++.+|+.+...-............+.|.++-.+|+++.
T Consensus 672 A~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~ 751 (2102)
T PLN03200 672 ARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEG 751 (2102)
T ss_pred HHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHH
Confidence 44444444322222 11 35679999999998878889999999987643211111123456889999999999999
Q ss_pred HHHHHHHHHhhcCCCccch-H------HHHHHHHHHhhhhcC--CCch--HHHHHHHHHhh
Q 000318 703 AKYAVHALAAITKDDGLKS-L------SVLYKRLVDMLEEKT--HLPA--VLQSLGCIAQT 752 (1675)
Q Consensus 703 AKyAvr~Laa~~~~~~~~~-~------~~L~~~L~~~L~~~~--~l~t--~L~sLg~Iaq~ 752 (1675)
=++|+.+|..++....... + .-.+..|++.|...+ +..+ .|..|+-+++.
T Consensus 752 k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~ 812 (2102)
T PLN03200 752 KRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLART 812 (2102)
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhh
Confidence 9999999987775432110 1 012345555554222 3333 56666666664
No 28
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.37 E-value=0.25 Score=62.92 Aligned_cols=369 Identities=17% Similarity=0.200 Sum_probs=202.6
Q ss_pred HHHHHHHHHhhcchhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHH--
Q 000318 245 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMS-- 322 (1675)
Q Consensus 245 ~h~Li~eL~~~~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~-- 322 (1675)
+.+++-.+|+ -++|..++|.|.+-|.+++=-+|-.++=.||-|--+=-.-|...-|.+.--++.-..|+.|-||..
T Consensus 378 aLDVLanvf~--~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITC 455 (885)
T KOG2023|consen 378 ALDVLANVFG--DELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITC 455 (885)
T ss_pred HHHHHHHhhH--HHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeee
Confidence 3556666654 367778899999999999999999999999977644211244455888888889999999999975
Q ss_pred H--HHHhHHHHhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhh-cCCCCH--HHHH---HHHHhhccCCh
Q 000318 323 V--LEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-LNSIPV--ETVK---LVAERLRDKSV 394 (1675)
Q Consensus 323 ~--Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~-l~~Vs~--elL~---~laeR~RDKK~ 394 (1675)
| -.+++.++.-+++ .--..++..|..|++|..-+|--|||.++..+...+ -+.||. .+|. .....-.-|+.
T Consensus 456 WTLsRys~wv~~~~~~-~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNL 534 (885)
T KOG2023|consen 456 WTLSRYSKWVVQDSRD-EYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNL 534 (885)
T ss_pred eeHhhhhhhHhcCChH-hhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcce
Confidence 2 3556665554432 223468889999999999999999999998887644 445553 1222 22233344556
Q ss_pred hHHHHHHHHHHHHHHHHhhhccCCCcchhccccchHHHhh--hhccCCCCc-------hhHHHHhhccCcCCCCCHHHHH
Q 000318 395 LVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILR--CLYDKDFGS-------DTIESVLCGSLFPTGFSVKDRV 465 (1675)
Q Consensus 395 ~VRkeAm~~La~LY~~~~~~~~~~~~~~~~~~wIP~~IL~--~~Y~nd~~~-------~lVE~vL~e~LlP~~~~~~~R~ 465 (1675)
.|==.||-+||.--..+..+..- .+. -||--|=. ..-+.|.+. ..|-..|-..++|+--++=+|.
T Consensus 535 lILYDAIgtlAdsvg~~Ln~~~Y----iqi--LmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc 608 (885)
T KOG2023|consen 535 LILYDAIGTLADSVGHALNKPAY----IQI--LMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRC 608 (885)
T ss_pred ehHHHHHHHHHHHHHHhcCcHHH----HHH--hccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHH
Confidence 66667777777766554332110 000 11221111 111222221 1466667778888887777776
Q ss_pred HHHHHHH----h--cCCHH--------HHHHHHHHHHHHHHHHHHHHHHH------HH-HhhhcCCCcHHHHHHHHHHHH
Q 000318 466 RHWVRIF----S--GFDRI--------EMKALEKILEQKQRLQQEMQRYL------SL-RQMHQDGDAPEIQKKILFCFR 524 (1675)
Q Consensus 466 ~~ll~l~----~--~LD~~--------~~kal~~il~~k~~l~~~~~~~l------~l-~~~~~~~d~~ei~~kL~~~i~ 524 (1675)
-++++=+ . .-|+. -+-+|.-+.+.-+.+-..+..++ ++ .+..++ ..|++..---..+-
T Consensus 609 ~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D-~~peVRQS~FALLG 687 (885)
T KOG2023|consen 609 FRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQD-EVPEVRQSAFALLG 687 (885)
T ss_pred HHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhcc-CChHHHHHHHHHHH
Confidence 6665411 0 00110 00111112222222222222211 11 111222 44666543222223
Q ss_pred HHHhhcCCchHHHHHHHHHHhhccHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhccccC
Q 000318 525 VMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSN--TSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFN 602 (1675)
Q Consensus 525 ~Ls~~fPDp~Ka~e~L~kf~klnD~Ri~kLLk~~idp~--td~~t~~~a~kELlkkL~~~~~~~d~l~~Ll~R~S~li~N 602 (1675)
-|++++++..+. +=..++.+|..-.+|+ +-+..+.-|.-|+--|++.+. ..+++.++++.-. ++|
T Consensus 688 Dltk~c~~~v~p----------~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~--~~~v~~vl~~L~~-iin 754 (885)
T KOG2023|consen 688 DLTKACFEHVIP----------NLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKM--KQYVSPVLEDLIT-IIN 754 (885)
T ss_pred HHHHHHHHhccc----------hHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhh--hhHHHHHHHHHHH-Hhc
Confidence 333444333222 1122334444444553 334556667778888877653 2566666665443 334
Q ss_pred hhHHH-HHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccHHHHH
Q 000318 603 KEHVK-EILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELV 651 (1675)
Q Consensus 603 ks~V~-~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v~~Li 651 (1675)
+.+.+ +|++.. |. -+-.+..++|+++..|.+..+
T Consensus 755 ~~~~~~tllENt--------------AI-TIGrLg~~~Pe~vAp~l~~f~ 789 (885)
T KOG2023|consen 755 RQNTPKTLLENT--------------AI-TIGRLGYICPEEVAPHLDSFM 789 (885)
T ss_pred ccCchHHHHHhh--------------hh-hhhhhhccCHHhcchhHHHHH
Confidence 44433 333311 11 122367789999999876554
No 29
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.36 E-value=0.017 Score=78.73 Aligned_cols=120 Identities=23% Similarity=0.201 Sum_probs=89.4
Q ss_pred hhhhhcccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHH
Q 000318 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQ 342 (1675)
Q Consensus 263 ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~e 342 (1675)
.++.|-..|..+++.+|..|++.||+.-. +.+...+...+.|.++.||...+.....+....+.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~------ 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP------ 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc------
Confidence 55666677788999999999999998632 23445555666899999999999998776433221
Q ss_pred HHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000318 343 ILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1675)
Q Consensus 343 i~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~Vs~elL~~laeR~RDKK~~VRkeAm~~La~L 407 (1675)
...|...|.|+|+.||.+|+.++..+.... . ..+...+.|+.+.||.+|+..|+.+
T Consensus 686 -~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~-----~---~~l~~~L~D~d~~VR~~Av~aL~~~ 741 (897)
T PRK13800 686 -APALRDHLGSPDPVVRAAALDVLRALRAGD-----A---ALFAAALGDPDHRVRIEAVRALVSV 741 (897)
T ss_pred -hHHHHHHhcCCCHHHHHHHHHHHHhhccCC-----H---HHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 235666778899999999999887754211 1 2346688999999999999999974
No 30
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.25 E-value=6.4 Score=51.79 Aligned_cols=181 Identities=13% Similarity=0.054 Sum_probs=122.5
Q ss_pred HHHHHHHhhcCCCCCCCCcch--HHHHHHHHHhhcchhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCCCCCchhhc
Q 000318 224 IKQFLVSSMSGDSRPGHSHID--YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQF 301 (1675)
Q Consensus 224 I~qyf~~il~~~~~~~~~~~~--~h~Li~eL~~~~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y 301 (1675)
++.||-.++..-. ..+..++ .|--+.+-.+-.|++-+--|-.+.--|...|.-+|--|.+++..|= +..--
T Consensus 69 vS~~Fp~VVKNVa-skn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L~DpN~LiRasALRvlSsIR------vp~Ia 141 (968)
T KOG1060|consen 69 VSLLFPAVVKNVA-SKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKALKDPNQLIRASALRVLSSIR------VPMIA 141 (968)
T ss_pred HHHHHHHHHHHhh-ccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhhcCCcHHHHHHHHHHHHhcc------hhhHH
Confidence 5566666553210 1112222 3444555566789988888889999999999999999999987542 33444
Q ss_pred HHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCCCCHHH
Q 000318 302 HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVET 381 (1675)
Q Consensus 302 ~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~Vs~el 381 (1675)
|-...+--+-..|.+|-||....-+++.+..-.|+. -.+|++.+...|.|.+..|=-+||.|+-++....++.|-...
T Consensus 142 PI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~--k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHkny 219 (968)
T KOG1060|consen 142 PIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQ--KDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNY 219 (968)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhh--HHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHH
Confidence 666777778899999999999999999988777653 348999999999999999999999999887777766554331
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHHHHHHhhh
Q 000318 382 VKLVAERLRDKSVLVKRYTMERLADIFRGCCLR 414 (1675)
Q Consensus 382 L~~laeR~RDKK~~VRkeAm~~La~LY~~~~~~ 414 (1675)
+.+..-+.|=.-==....|..|.+.-+.+..+
T Consensus 220 -rklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~ 251 (968)
T KOG1060|consen 220 -RKLCRLLPDVDEWGQVVLINMLTRYARHQLPD 251 (968)
T ss_pred -HHHHhhccchhhhhHHHHHHHHHHHHHhcCCC
Confidence 12222222221111223455666555544443
No 31
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.09 E-value=0.28 Score=62.64 Aligned_cols=100 Identities=26% Similarity=0.193 Sum_probs=81.0
Q ss_pred hhcccccCCchHHHHHHHHHHHHhhcCCCCCchhhc-HHHHHHHHhccc-----CCChhHHHHHHHHhHHHHhcCCCCCC
Q 000318 266 YLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQF-HSVFSEFLKRLT-----DRIVAVRMSVLEHVKSCLLTDPSRAD 339 (1675)
Q Consensus 266 qLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y-~~lw~~fL~R~~-----D~s~~VR~~~Ve~~~~iL~~~p~~~~ 339 (1675)
+|+.-|..+-+.+|.-||..|.+.|+. |+.-- |.+-...|++.. |.+++||++.++..+.+|.+-.++..
T Consensus 224 ~l~~LL~d~~p~VRS~a~~gv~k~~s~----fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~ 299 (1005)
T KOG1949|consen 224 ELYSLLEDPYPMVRSTAILGVCKITSK----FWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPL 299 (1005)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHH----HHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhH
Confidence 445556778899999999999999985 55544 345667787764 67889999999999998876545555
Q ss_pred hHHHHHHHHhhhCCchhHHHHHHHHHHHHh
Q 000318 340 APQILTALCDRLLDFDENVRKQVVAVICDV 369 (1675)
Q Consensus 340 ~~ei~~~L~~rL~D~DEkVR~aaV~ai~~l 369 (1675)
-..++++|.--|+|.-|+||.|+|..+..+
T Consensus 300 le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 300 LEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 678899999999999999999999988654
No 32
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.08 E-value=0.51 Score=60.68 Aligned_cols=241 Identities=19% Similarity=0.287 Sum_probs=153.5
Q ss_pred hhHHHHHHHHHHHHhccccc-----ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhhhhHHHHHHH--------HHHh
Q 000318 165 ESVLSSMQTIMIVLLEESED-----IQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQF--------LVSS 231 (1675)
Q Consensus 165 ~~V~~~m~~IL~~vI~Ese~-----vp~~vLd~IL~~l~~~~~~~a~~lA~~v~~~~~dkL~~~I~qy--------f~~i 231 (1675)
+.|....+..+..++...+. +..+++..|+..+..... .....|..++...+.. ...+... +.++
T Consensus 91 ~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~-~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l 168 (503)
T PF10508_consen 91 PKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDL-SVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSL 168 (503)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcH-HHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHH
Confidence 46777777777777776655 556777777777754433 3333444444333321 1222222 3333
Q ss_pred hcCCCCCCCCcchHHHHHHHHHhhcchhhhh-----hhhhhcccccCCchHHHHHHHHHHHHhhcCC-CCCchhhcHHHH
Q 000318 232 MSGDSRPGHSHIDYHEVIYDVYRCSPQILSG-----VVPYLTGELLTDQLDTRLKAVGLVGDLFAVP-GSANNEQFHSVF 305 (1675)
Q Consensus 232 l~~~~~~~~~~~~~h~Li~eL~~~~P~lL~~-----ViPqLe~EL~sed~~~Rl~At~llG~mfs~~-~s~~a~~y~~lw 305 (1675)
+... ......++++++.+|.+..|+.+.. +++.+..+|..+|+-+|+.|+++|++|-..+ |..+..+ ..++
T Consensus 169 ~~~~--~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~-~gi~ 245 (503)
T PF10508_consen 169 MSQS--SDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQ-QGIF 245 (503)
T ss_pred Hhcc--CHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHh-CCHH
Confidence 3221 1123457899999999999988765 5689999999999999999999999998855 3333322 2344
Q ss_pred HHHHhccc----CC-ChhHHHH-HHHHhHHHHhcCCCC--CChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhh----
Q 000318 306 SEFLKRLT----DR-IVAVRMS-VLEHVKSCLLTDPSR--ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA---- 373 (1675)
Q Consensus 306 ~~fL~R~~----D~-s~~VR~~-~Ve~~~~iL~~~p~~--~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~---- 373 (1675)
........ |. ...+.+- .+++.+.+...+|.. ...+.++..|...+...|...|..|+.+++.++...
T Consensus 246 ~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~ 325 (503)
T PF10508_consen 246 DKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQ 325 (503)
T ss_pred HHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHH
Confidence 44444433 33 2222221 235555544444431 122456666676777899999999999999887522
Q ss_pred -c-CCCCH---HHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000318 374 -L-NSIPV---ETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1675)
Q Consensus 374 -l-~~Vs~---elL~~laeR~RDKK~~VRkeAm~~La~LY~~ 410 (1675)
+ ..-+. .+++.++.+++.-+..+|..|+..|+.++..
T Consensus 326 ~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~ 367 (503)
T PF10508_consen 326 LLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTS 367 (503)
T ss_pred HHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Confidence 3 11122 4688999999999999999999999999964
No 33
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.00 E-value=2.9 Score=53.89 Aligned_cols=131 Identities=21% Similarity=0.220 Sum_probs=88.5
Q ss_pred hhhhhcccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCC-ChhHHHHHHHHhHHHHhcCCCCCCh-
Q 000318 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDR-IVAVRMSVLEHVKSCLLTDPSRADA- 340 (1675)
Q Consensus 263 ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~-s~~VR~~~Ve~~~~iL~~~p~~~~~- 340 (1675)
++|.|-.-|..+|..+-..|.++|.+|.+.+. .+..-+++....-|...... +..||+-+.+.+..|...++.....
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~-~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~ 198 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHPE-GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAV 198 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCch-hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 45566666788999999999999999998653 23333222224445555555 7789999999998877665542111
Q ss_pred --HHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhh--cCCC-CHHHHHHHHHhhccCCh
Q 000318 341 --PQILTALCDRLLDFDENVRKQVVAVICDVACHA--LNSI-PVETVKLVAERLRDKSV 394 (1675)
Q Consensus 341 --~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~--l~~V-s~elL~~laeR~RDKK~ 394 (1675)
+.+++.+...|.+.|.-||+.++..+.++|... ...+ ...++..+...+.+-+.
T Consensus 199 ~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~ 257 (503)
T PF10508_consen 199 VNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEE 257 (503)
T ss_pred HhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhcccc
Confidence 137788888899999999999999999998722 2211 22345555555544443
No 34
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.00 E-value=1.6 Score=55.89 Aligned_cols=231 Identities=16% Similarity=0.185 Sum_probs=145.4
Q ss_pred HHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCCCCH--
Q 000318 302 HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV-- 379 (1675)
Q Consensus 302 ~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~Vs~-- 379 (1675)
.+++-.-|..|.|+...||-+.+.+++.++..-+.. -...++..+..-+.+.-++=-.++|+.++-++......++.
T Consensus 215 v~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~-aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~l 293 (569)
T KOG1242|consen 215 VPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAY-AVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCL 293 (569)
T ss_pred HhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcc-hhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHH
Confidence 566667777788999999999988888766543322 23566777777777777777788888888777766554433
Q ss_pred -HHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCcchhccccchHHHhhhhccCCCC-chhHHHHhhccCcCC
Q 000318 380 -ETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFG-SDTIESVLCGSLFPT 457 (1675)
Q Consensus 380 -elL~~laeR~RDKK~~VRkeAm~~La~LY~~~~~~~~~~~~~~~~~~wIP~~IL~~~Y~nd~~-~~lVE~vL~e~LlP~ 457 (1675)
+++..+.+.|-|-|+.||+.++++|-++=... ++ ..+.-|=.+++.|+-++.-+ ...++.+..+.
T Consensus 294 p~iiP~lsevl~DT~~evr~a~~~~l~~~~svi-----dN----~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~tt---- 360 (569)
T KOG1242|consen 294 PDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI-----DN----PDIQKIIPTLLDALADPSCYTPECLDSLGATT---- 360 (569)
T ss_pred hHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh-----cc----HHHHHHHHHHHHHhcCcccchHHHHHhhccee----
Confidence 56788999999999999999999998876642 11 12334456677776444312 23444444433
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCchHHH
Q 000318 458 GFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAE 537 (1675)
Q Consensus 458 ~~~~~~R~~~ll~l~~~LD~~~~kal~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kL~~~i~~Ls~~fPDp~Ka~ 537 (1675)
+..+.|+.+..-+.-|+.+.-. - -+..++++...+|.-+++..+||....
T Consensus 361 -------------FV~~V~~psLalmvpiL~R~l~----------e-------Rst~~kr~t~~IidNm~~LveDp~~la 410 (569)
T KOG1242|consen 361 -------------FVAEVDAPSLALMVPILKRGLA----------E-------RSTSIKRKTAIIIDNMCKLVEDPKDLA 410 (569)
T ss_pred -------------eeeeecchhHHHHHHHHHHHHh----------h-------ccchhhhhHHHHHHHHHHhhcCHHHHh
Confidence 3345555544333334332211 1 122345566667888888888988776
Q ss_pred HHHHHHHhhccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 000318 538 ENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAK 582 (1675)
Q Consensus 538 e~L~kf~klnD~Ri~kLLk~~idp~td~~t~~~a~kELlkkL~~~ 582 (1675)
..|..+- +.+...+.+. .|++.. .+.+|.-.+++++|..
T Consensus 411 pfl~~Ll----p~lk~~~~d~-~PEvR~-vaarAL~~l~e~~g~~ 449 (569)
T KOG1242|consen 411 PFLPSLL----PGLKENLDDA-VPEVRA-VAARALGALLERLGEV 449 (569)
T ss_pred hhHHHHh----hHHHHHhcCC-ChhHHH-HHHHHHHHHHHHHHhh
Confidence 6666654 3344444444 566554 3345666677777654
No 35
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.89 E-value=0.55 Score=55.40 Aligned_cols=231 Identities=12% Similarity=0.201 Sum_probs=152.5
Q ss_pred hhhcCCCcchhHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhheeccC
Q 000318 63 VLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDL 142 (1675)
Q Consensus 63 ~LL~HkD~~Vr~~vAcCLadIlRI~APdAPytd~qLkdIF~l~v~qf~~L~d~~~p~f~q~~~LLE~LA~vks~vl~~DL 142 (1675)
..|.+.|..+|+-.--||+++|-=..|+ ..+..|+.-++.||.+-| .|. ..+...|.-....+-|-.+
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~-~L~~~ev~~L~~F~~~rl---~D~--------~~~~~~l~gl~~L~~~~~~ 73 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPD-FLSRQEVQVLLDFFCSRL---DDH--------ACVQPALKGLLALVKMKNF 73 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHh-hccHHHHHHHHHHHHHHh---ccH--------hhHHHHHHHHHHHHhCcCC
Confidence 4678899999999999999999765444 478899999999999865 442 2233333333334434444
Q ss_pred CchHHHHHHHHHHHHhhc-CCChhhHHHHHHHHHHHHhccc----ccccHHHHHHHHHHhcCCCcH----HHHHHHHHHH
Q 000318 143 ECDELVNEMYSTFFAVAS-DDHPESVLSSMQTIMIVLLEES----EDIQEDLLVILLSALGRNKND----TARRLAMNVI 213 (1675)
Q Consensus 143 ~~~~Li~~lF~~ff~~v~-~~~~~~V~~~m~~IL~~vI~Es----e~vp~~vLd~IL~~l~~~~~~----~a~~lA~~v~ 213 (1675)
+. +....+.+.+|+-+. ..++...+.....||..+++.. ..+..+.+.-++..+.-++-. -++.|...|+
T Consensus 74 ~~-~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~ 152 (262)
T PF14500_consen 74 SP-ESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVIL 152 (262)
T ss_pred Ch-hhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 32 235555555555443 3456666666666666666553 446778888777777544432 7888888887
Q ss_pred HHhhhhhHHHHHHHHHHhhc------CCCCCCCCcchHHHHHHHHHhh---cchhhhhhhhhhcccccCCchHHHHHHHH
Q 000318 214 EQCAGKLEAGIKQFLVSSMS------GDSRPGHSHIDYHEVIYDVYRC---SPQILSGVVPYLTGELLTDQLDTRLKAVG 284 (1675)
Q Consensus 214 ~~~~dkL~~~I~qyf~~il~------~~~~~~~~~~~~h~Li~eL~~~---~P~lL~~ViPqLe~EL~sed~~~Rl~At~ 284 (1675)
..-. +.+.+..+|--+.. ..+......+..-+|-..|..| .|..-.-++|.|-+.|.++...++..+.+
T Consensus 153 ~~~~--~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~ 230 (262)
T PF14500_consen 153 QEFD--ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQ 230 (262)
T ss_pred Hhcc--cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 7765 47777777743321 1111111244445555555544 67777789999999999999999999999
Q ss_pred HHHHhhcCCCCC-chhhcHHHHHHH
Q 000318 285 LVGDLFAVPGSA-NNEQFHSVFSEF 308 (1675)
Q Consensus 285 llG~mfs~~~s~-~a~~y~~lw~~f 308 (1675)
+|..++..-|.. +......+|++.
T Consensus 231 tL~~c~~~y~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 231 TLKACIENYGADSLSPHWSTIWNAL 255 (262)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 999999876643 344457778764
No 36
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.71 E-value=0.094 Score=59.73 Aligned_cols=146 Identities=18% Similarity=0.154 Sum_probs=104.3
Q ss_pred hhhhcccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHH
Q 000318 264 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQI 343 (1675)
Q Consensus 264 iPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei 343 (1675)
++.|...+.+..-.+-..|..+++.|+..-+..|......+....|+|..|....||.....+...|+.+-+.. ..+
T Consensus 55 ~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~---~~~ 131 (228)
T PF12348_consen 55 LDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYS---PKI 131 (228)
T ss_dssp -HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH---HHH
Confidence 34555556666677888899999999987666676667888889999999999999999999998888765411 245
Q ss_pred -HHHHHhhhCCchhHHHHHHHHHHHHhhhhhc---CCCC-----HHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHh
Q 000318 344 -LTALCDRLLDFDENVRKQVVAVICDVACHAL---NSIP-----VETVKLVAERLRDKSVLVKRYTMERLADIFRGCC 412 (1675)
Q Consensus 344 -~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l---~~Vs-----~elL~~laeR~RDKK~~VRkeAm~~La~LY~~~~ 412 (1675)
...+..-+.+-...||..++..+..+..... ..+. ..++..+..-+.|.++.||..|-..+..+|+.+-
T Consensus 132 ~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 132 LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 7888888999999999999998877654333 2221 3467899999999999999999999999999763
No 37
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.61 E-value=15 Score=50.40 Aligned_cols=312 Identities=13% Similarity=0.124 Sum_probs=173.3
Q ss_pred hhhhcCCCcchhHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhheecc
Q 000318 62 PVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLD 141 (1675)
Q Consensus 62 ~~LL~HkD~~Vr~~vAcCLadIlRI~APdAPytd~qLkdIF~l~v~qf~~L~d~~~p~f~q~~~LLE~LA~vks~vl~~D 141 (1675)
..+++-.-.-||--.|--+|+|.|---|+ +--++.+|++.+.. +++.+.-.-.++||.++.++..-. +
T Consensus 86 ~~~~~E~~~~vr~k~~dviAeia~~~l~e------~WPell~~L~q~~~---S~~~~~rE~al~il~s~~~~~~~~---~ 153 (1075)
T KOG2171|consen 86 EIIQSETEPSVRHKLADVIAEIARNDLPE------KWPELLQFLFQSTK---SPNPSLRESALLILSSLPETFGNT---L 153 (1075)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHhcccc------chHHHHHHHHHHhc---CCCcchhHHHHHHHHhhhhhhccc---c
Confidence 34555666779999999999999988787 55678888888754 344444455688888888753221 1
Q ss_pred CCchHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccc--c-ccHHHHHH---HHHH---hcCCCcHHHHHHHHHH
Q 000318 142 LECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESE--D-IQEDLLVI---LLSA---LGRNKNDTARRLAMNV 212 (1675)
Q Consensus 142 L~~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese--~-vp~~vLd~---IL~~---l~~~~~~~a~~lA~~v 212 (1675)
-+--+-+..||...+.- ++.+ |...-..-++.++...+ . .-...-+. +++. +.......+...+-+.
T Consensus 154 ~~~~~~l~~lf~q~~~d--~s~~--vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~ 229 (1075)
T KOG2171|consen 154 QPHLDDLLRLFSQTMTD--PSSP--VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEA 229 (1075)
T ss_pred chhHHHHHHHHHHhccC--Ccch--HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHH
Confidence 12234567777776642 2333 66666666777666654 1 11111111 1111 1222222223333333
Q ss_pred HHHhhhhhHHHHHHHHHHhhc------CCCCCCCCc--chHHHHHHHHHhhcchhhhhhhhhhcccccCCchHHHHHHHH
Q 000318 213 IEQCAGKLEAGIKQFLVSSMS------GDSRPGHSH--IDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVG 284 (1675)
Q Consensus 213 ~~~~~dkL~~~I~qyf~~il~------~~~~~~~~~--~~~h~Li~eL~~~~P~lL~~ViPqLe~EL~sed~~~Rl~At~ 284 (1675)
+..-+...-+.+..+|.+++. ++ ...+.. ..+-++|.-+-+++|.++----| +-+ .+...
T Consensus 230 l~El~e~~pk~l~~~l~~ii~~~l~Ia~n-~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~-~~~----------~lv~~ 297 (1075)
T KOG2171|consen 230 LIELLESEPKLLRPHLSQIIQFSLEIAKN-KELENSIRHLALEFLVSLSEYAPAMCKKLAL-LGH----------TLVPV 297 (1075)
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHhhc-ccccHHHHHHHHHHHHHHHHhhHHHhhhchh-hhc----------cHHHH
Confidence 333333333444444444331 21 111122 23667888888887766543222 111 11112
Q ss_pred HHHHhhcCCCCCchhhcHHHHHHHHh-cccCCCh-hHHHHHHHHhHHHHhcCCC-CCChHHHHHHHHhhhCCchhHHHHH
Q 000318 285 LVGDLFAVPGSANNEQFHSVFSEFLK-RLTDRIV-AVRMSVLEHVKSCLLTDPS-RADAPQILTALCDRLLDFDENVRKQ 361 (1675)
Q Consensus 285 llG~mfs~~~s~~a~~y~~lw~~fL~-R~~D~s~-~VR~~~Ve~~~~iL~~~p~-~~~~~ei~~~L~~rL~D~DEkVR~a 361 (1675)
++. |...-..+ .+|++ --.|.+- +.=--+.+.+-+.|..+.. .-..+.+.+++..-|.-++++=|.|
T Consensus 298 ~l~-~mte~~~D---------~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~A 367 (1075)
T KOG2171|consen 298 LLA-MMTEEEDD---------DEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHA 367 (1075)
T ss_pred HHH-hcCCcccc---------hhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHH
Confidence 222 22221111 45554 1111111 1112223334444555533 2345678899999999999999999
Q ss_pred HHHHHHHhhhhhcCCC---CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHH
Q 000318 362 VVAVICDVACHALNSI---PVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1675)
Q Consensus 362 aV~ai~~la~~~l~~V---s~elL~~laeR~RDKK~~VRkeAm~~La~LY~~~ 411 (1675)
++.+|+.++--..+.+ =..++..+..-+.|-.+.||-.|+..+|++=-..
T Consensus 368 aL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl 420 (1075)
T KOG2171|consen 368 ALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDL 420 (1075)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhh
Confidence 9999988875332222 2356778889999999999999999999886554
No 38
>KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only]
Probab=95.57 E-value=0.012 Score=67.92 Aligned_cols=66 Identities=26% Similarity=0.403 Sum_probs=53.0
Q ss_pred CCCCCCccccCceEEEecCCCCceEEEEEEEecC-CCCeeEEEccCCc----ceeeec---CcccEEEecCCCC
Q 000318 1368 NAGVNIEDLIGYRIKVWWPMDKQFYEGTIKSYDP-IKKKHVILYDDED----VEVLRL---DKERWELLDNGRK 1433 (1675)
Q Consensus 1368 ~~~~~~~~lvG~rv~V~Wp~D~~~Y~G~V~~y~~-~~~~H~v~YdDGd----~E~l~L---~~e~~~~~~~~~~ 1433 (1675)
-+...++.+||++|..-||+++.||.+.|+.|+. ...+|.+.||-.+ .+|++| ..|+++|...+..
T Consensus 152 ~~n~pp~slvgr~v~~k~pdk~~~te~iit~~~~~~E~~~~l~~~~~~~~~p~~wvdl~~I~p~DIrw~g~~~~ 225 (273)
T KOG4675|consen 152 WGNVPPESLVGRKVWIKWPDKRKFTEAIITQYDAEKEGHHLLVPDINDCNDPWEWVDLREISPEDIRWEGGDPG 225 (273)
T ss_pred cccCCchhhccccccccCcccccccccccccchhhhhhhhhcccccccccCCccccccccCCHHhccccCCCCC
Confidence 3456677899999999999999999999999554 5567888888666 678877 4888999876443
No 39
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.17 E-value=11 Score=48.40 Aligned_cols=256 Identities=17% Similarity=0.191 Sum_probs=142.7
Q ss_pred cccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHh
Q 000318 270 ELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCD 349 (1675)
Q Consensus 270 EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~ 349 (1675)
-+.+.+-.+|....++|+.+.-.-+.-=-.-|..+--..++|.-|+.+.||++.|.+.-.+= .-+.++...+...|..
T Consensus 99 g~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Q--e~~~neen~~~n~l~~ 176 (885)
T COG5218 99 GTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQ--EMELNEENRIVNLLKD 176 (885)
T ss_pred cccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH--hccCChHHHHHHHHHH
Confidence 34578999999999999987654331001234456667889999999999999999876532 2233444555555544
Q ss_pred h-hCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCcchhccccc
Q 000318 350 R-LLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWI 428 (1675)
Q Consensus 350 r-L~D~DEkVR~aaV~ai~~la~~~l~~Vs~elL~~laeR~RDKK~~VRkeAm~~La~LY~~~~~~~~~~~~~~~~~~wI 428 (1675)
- -+||-..||.+|.--| .|+..++-.+.||.||=....|+- +|....+++.+ -++..|
T Consensus 177 ~vqnDPS~EVRr~allni---------~vdnsT~p~IlERarDv~~anRr~-------vY~r~Lp~iGd-----~~~lsi 235 (885)
T COG5218 177 IVQNDPSDEVRRLALLNI---------SVDNSTYPCILERARDVSGANRRM-------VYERCLPRIGD-----LKSLSI 235 (885)
T ss_pred HHhcCcHHHHHHHHHHHe---------eeCCCcchhHHHHhhhhhHHHHHH-------HHHHHhhhhcc-----hhhccc
Confidence 3 4899999999965544 356667778899999999888874 45554444321 234445
Q ss_pred hHHHhhhhc-cCC--CC--chhHHHHhhccCcCCCCCHHHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHH--HHHHH
Q 000318 429 PGKILRCLY-DKD--FG--SDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRI----EMKALEKILEQKQR--LQQEM 497 (1675)
Q Consensus 429 P~~IL~~~Y-~nd--~~--~~lVE~vL~e~LlP~~~~~~~R~~~ll~l~~~LD~~----~~kal~~il~~k~~--l~~~~ 497 (1675)
--+|+-.=+ -+| +. ...++-+....+.|.+.+ ++.+...+|-. .++|+..++..+.- .+..+
T Consensus 236 ~kri~l~ewgl~dRe~sv~~a~~d~ia~~w~~~~d~~-------lveLle~lDvSr~sv~v~aik~~F~~R~D~ls~~eF 308 (885)
T COG5218 236 DKRILLMEWGLLDREFSVKGALVDAIASAWRIPEDLR-------LVELLEFLDVSRRSVLVAAIKGVFEKRPDVLSEKEF 308 (885)
T ss_pred cceehhhhhcchhhhhhHHHHHHHHHHHHhccccccc-------HHHHHHHHhhhhHHHHHHHHHHHHhhccccchhhhc
Confidence 555542211 222 21 236777777777777643 33333333332 22233333221110 01111
Q ss_pred HHHHHHHhhhcCCCcHHH-HHH----HHHHHHHHHhhcCCchHHHHHHHHHHhhccHHHHHHHHHH
Q 000318 498 QRYLSLRQMHQDGDAPEI-QKK----ILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNL 558 (1675)
Q Consensus 498 ~~~l~l~~~~~~~d~~ei-~~k----L~~~i~~Ls~~fPDp~Ka~e~L~kf~klnD~Ri~kLLk~~ 558 (1675)
-.|+ +..... +..-. .+- |...|.-|-.-||+..+....+..+-.+.++..|.-+-++
T Consensus 309 Pe~~--w~d~T~-E~tfL~rt~~lyCldnNitell~~fPe~~~L~~~~~hyvslry~sSYnt~cfi 371 (885)
T COG5218 309 PEYL--WSDPTE-ENTFLSRTELLYCLDNNITELLGRFPESLALPDLESHYVSLRYRSSYNTLCFI 371 (885)
T ss_pred HHHH--hhCchH-HHHHHHHHHHHHHHhccHHHHHhhchhhhcchHHHhhheeeeeccccchhHHH
Confidence 1111 000000 00000 001 1222444445599999988888888878777644444333
No 40
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.09 E-value=0.067 Score=51.33 Aligned_cols=86 Identities=23% Similarity=0.232 Sum_probs=65.5
Q ss_pred hhhhcccc-cCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHH
Q 000318 264 VPYLTGEL-LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQ 342 (1675)
Q Consensus 264 iPqLe~EL-~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~e 342 (1675)
||.|-..| ..++..+|..|+.+||++- .+.+...++..+.|.++.||.+.+.+.+.+ - ..+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i-~-------~~~ 62 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRI-G-------DPE 62 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC-H-------HHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh-C-------CHH
Confidence 45666667 7889999999999999431 235566666666999999999999999864 1 247
Q ss_pred HHHHHHhhhCCc-hhHHHHHHHHHHH
Q 000318 343 ILTALCDRLLDF-DENVRKQVVAVIC 367 (1675)
Q Consensus 343 i~~~L~~rL~D~-DEkVR~aaV~ai~ 367 (1675)
.+..|.+.+.|. +..||.+++.+++
T Consensus 63 ~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 63 AIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp THHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 888999988775 5567999888763
No 41
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.77 E-value=0.41 Score=64.69 Aligned_cols=125 Identities=15% Similarity=0.126 Sum_probs=89.8
Q ss_pred HHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHH-HHH
Q 000318 307 EFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETV-KLV 385 (1675)
Q Consensus 307 ~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~Vs~elL-~~l 385 (1675)
.|+-|+.|+.|.||+.|++..+-.+.+-|+.-...--++++.=.|.|-...||+.+|+++.-+-...-..-..+++ .-.
T Consensus 291 VFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRF 370 (1048)
T KOG2011|consen 291 VFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRF 370 (1048)
T ss_pred eeeeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 6889999999999999999999888888864333467899999999999999999999998877653222222222 222
Q ss_pred HHh-----hccCChhHHHHHHHHHHHHHHHHhhhccCCCcchhccccchHHHhhhhccCCCC
Q 000318 386 AER-----LRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFG 442 (1675)
Q Consensus 386 aeR-----~RDKK~~VRkeAm~~La~LY~~~~~~~~~~~~~~~~~~wIP~~IL~~~Y~nd~~ 442 (1675)
.+| .||-...||..++..+..++..-+.. ... -..|++++|+.+.+
T Consensus 371 K~RIVeMadrd~~~~Vrav~L~~~~~~~~~g~L~-------d~d----i~~Vy~Li~d~~r~ 421 (1048)
T KOG2011|consen 371 KDRIVEMADRDRNVSVRAVGLVLCLLLSSSGLLS-------DKD----ILIVYSLIYDSNRR 421 (1048)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHhcccccC-------hhH----HHHHHHHHhccCcc
Confidence 222 58888999999998887776643211 111 23457777876655
No 42
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=94.69 E-value=7 Score=50.99 Aligned_cols=298 Identities=15% Similarity=0.215 Sum_probs=157.5
Q ss_pred hhhcCCCcchhHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhheeccC
Q 000318 63 VLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDL 142 (1675)
Q Consensus 63 ~LL~HkD~~Vr~~vAcCLadIlRI~APdAPytd~qLkdIF~l~v~qf~~L~d~~~p~f~q~~~LLE~LA~vks~vl~~DL 142 (1675)
..|.....-||..+|.||+-+.-. -.||.-+++..||+.+-.-.+.=. + +-....|..+.. .+. +
T Consensus 560 ~gl~De~qkVR~itAlalsalaea---a~Pygie~fDsVlkpLwkgir~hr---g---k~laafLkAigy---lip--l- 624 (1172)
T KOG0213|consen 560 HGLKDEQQKVRTITALALSALAEA---ATPYGIEQFDSVLKPLWKGIRQHR---G---KELAAFLKAIGY---LIP--L- 624 (1172)
T ss_pred HhhcccchhhhhHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHHHcc---C---hHHHHHHHHHhh---ccc--c-
Confidence 344555566999999999988765 468999999999998866443211 1 112233333322 111 1
Q ss_pred CchHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHhhh
Q 000318 143 ECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNK----NDTARRLAMNVIEQCAG 218 (1675)
Q Consensus 143 ~~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~vp~~vLd~IL~~l~~~~----~~~a~~lA~~v~~~~~d 218 (1675)
+..-+..+|. ..+|.-+|-|..+-..+.-.++|.-+.+.- .+++|.- .+
T Consensus 625 -----md~eya~yyT--------------revmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r--------~d 677 (1172)
T KOG0213|consen 625 -----MDAEYASYYT--------------REVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIR--------FD 677 (1172)
T ss_pred -----ccHHHHHHhH--------------HHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHh--------hh
Confidence 1112222222 345556666665555555555555443221 1144321 12
Q ss_pred hhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhh--cchhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCCCCC
Q 000318 219 KLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRC--SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA 296 (1675)
Q Consensus 219 kL~~~I~qyf~~il~~~~~~~~~~~~~h~Li~eL~~~--~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~ 296 (1675)
.+...+..|.+-=+.+|... -..+-+.-.+|..- |-.++.- +-.+|..|.++.|..+.+++.++|+..|..
T Consensus 678 ilp~ff~~fw~rrmA~drr~---ykqlv~ttv~ia~KvG~~~~v~R----~v~~lkde~e~yrkm~~etv~ri~~~lg~~ 750 (1172)
T KOG0213|consen 678 ILPEFFFSFWGRRMALDRRN---YKQLVDTTVEIAAKVGSDPIVSR----VVLDLKDEPEQYRKMVAETVSRIVGRLGAA 750 (1172)
T ss_pred hhHHHHhhhhhhhhhccccc---hhhHHHHHHHHHHHhCchHHHHH----HhhhhccccHHHHHHHHHHHHHHHhccccc
Confidence 22233333333222222110 00112222222211 2233333 335678899999999999999999876532
Q ss_pred -----------------c------------------------hhhc-HHHHHHHHhcccCCChhHHHHHHHHhHHHHh--
Q 000318 297 -----------------N------------------------NEQF-HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLL-- 332 (1675)
Q Consensus 297 -----------------~------------------------a~~y-~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~-- 332 (1675)
| ++.| |.+-..-|.|.+.+++.||....+.+..|..
T Consensus 751 diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vl 830 (1172)
T KOG0213|consen 751 DIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVL 830 (1172)
T ss_pred cccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence 1 1222 6667777889999999999987776655321
Q ss_pred ---------cC--------CC--------------------------CCChHHHHHHHHhhhCCchhHHHHHHHHHHHHh
Q 000318 333 ---------TD--------PS--------------------------RADAPQILTALCDRLLDFDENVRKQVVAVICDV 369 (1675)
Q Consensus 333 ---------~~--------p~--------------------------~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~l 369 (1675)
.| .. ..-+++|+..|.--|..-.+||-...|.-++.+
T Consensus 831 ktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~I 910 (1172)
T KOG0213|consen 831 KTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTI 910 (1172)
T ss_pred HhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHH
Confidence 11 00 001223333333345555667766666666666
Q ss_pred hhhhcCCCCHH-HHH---HHHHhhccCChhHHHHHHHHHHHHHH
Q 000318 370 ACHALNSIPVE-TVK---LVAERLRDKSVLVKRYTMERLADIFR 409 (1675)
Q Consensus 370 a~~~l~~Vs~e-lL~---~laeR~RDKK~~VRkeAm~~La~LY~ 409 (1675)
+....+.|+.. -++ .|.+-++--|..+|+.|.+++|-|=+
T Consensus 911 adrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 911 ADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred HhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 66666666653 111 23344444555667777666665544
No 43
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.45 E-value=31 Score=47.80 Aligned_cols=145 Identities=17% Similarity=0.194 Sum_probs=90.7
Q ss_pred hhHHHHHHHHHhhhhhheeccCC-chHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHhcC
Q 000318 121 GRRVVILETLAKYRSCVVMLDLE-CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGR 199 (1675)
Q Consensus 121 ~q~~~LLE~LA~vks~vl~~DL~-~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~vp~~vLd~IL~~l~~ 199 (1675)
..-++.+.-+.+-..++-..|.+ |=.=+..+|..||.+- ....+.+.....+++..|+.++-.+-..+-..++..+..
T Consensus 282 ~~t~~W~~v~~~~~~~la~~q~~~~~~~~~~~~~~~~t~~-~s~~~e~~q~a~q~l~~il~~sv~~~~~~c~~~~~~~l~ 360 (1176)
T KOG1248|consen 282 LLTVAWLKVLNEAHDILATLQEEKALQALPRLFSLFFTIL-ESLIEELVQAASQSLKEILKESVTVIDALCSKQLHSLLD 360 (1176)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHhhhhhhhHHHHHH-hcccHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHc
Confidence 45567777777777776666765 5445677888888844 344566778889999999999888666666665655544
Q ss_pred CCcHHHHHHH----HHHHHHhhhhhHHHHHHHHHHhhc-CCCCCCCCcchHH-HHHHHHHhhcchhhhhhhhh
Q 000318 200 NKNDTARRLA----MNVIEQCAGKLEAGIKQFLVSSMS-GDSRPGHSHIDYH-EVIYDVYRCSPQILSGVVPY 266 (1675)
Q Consensus 200 ~~~~~a~~lA----~~v~~~~~dkL~~~I~qyf~~il~-~~~~~~~~~~~~h-~Li~eL~~~~P~lL~~ViPq 266 (1675)
-+..++|.++ ..+|++|...-.|++..-+-.+-. ..+........++ -+.-.+-..=|+.+++++|.
T Consensus 361 ~kf~~~~~~ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpL 433 (1176)
T KOG1248|consen 361 YKFHAVWRFILQILSALFEKCGELSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTILPL 433 (1176)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcch
Confidence 4444555444 455566665444444443333211 1111122222443 45556777899999999997
No 44
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.42 E-value=9.4 Score=48.07 Aligned_cols=299 Identities=16% Similarity=0.208 Sum_probs=164.9
Q ss_pred CcchhHHHHHHHHHHhhhcCCCCCCChh--HHHH-HHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhh-hheeccCC-
Q 000318 69 DKDVKLLVATCICEITRITAPEAPYSDD--VLKD-IFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRS-CVVMLDLE- 143 (1675)
Q Consensus 69 D~~Vr~~vAcCLadIlRI~APdAPytd~--qLkd-IF~l~v~qf~~L~d~~~p~f~q~~~LLE~LA~vks-~vl~~DL~- 143 (1675)
+.+.-..+.-||..++.-..-+.++.+. ...+ |...+++.+-...+.+.. ....+|+.++.+=. ++-.++.+
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~---~~~~~L~~~~~l~~~iv~~l~~~~ 132 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSD---LDDRVLELLSRLINLIVRSLSPEK 132 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccc---cchHHHHHHHHHHHHHHHhCCHHH
Confidence 3333344445555555555444434432 2222 444444433222222222 44566777765533 33345555
Q ss_pred chHHHHHHHHHHHHh-----hcC------CChhhHHHHHHHHHHHHhccccccc--HHHHHHHHHHhcCCCcH----HHH
Q 000318 144 CDELVNEMYSTFFAV-----ASD------DHPESVLSSMQTIMIVLLEESEDIQ--EDLLVILLSALGRNKND----TAR 206 (1675)
Q Consensus 144 ~~~Li~~lF~~ff~~-----v~~------~~~~~V~~~m~~IL~~vI~Ese~vp--~~vLd~IL~~l~~~~~~----~a~ 206 (1675)
.++++.++|..|+.. ... ..+.........|+..+=-+. .+| .++++-++......... ++.
T Consensus 133 q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~-~~~~~~~ll~~l~~~~~~~~~~~~~~~~~ 211 (415)
T PF12460_consen 133 QQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDV-SLPDLEELLQSLLNLALSSEDEFSRLAAL 211 (415)
T ss_pred HHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCccc-CccCHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 578899999999810 000 123334444444444332222 233 23455444433222222 556
Q ss_pred HHHHHHHHHh--hhhhHHHHHHHHHHhhcCCCCCCCCcchHHH--------HHHHHHhhcchhhhhhhhhhcccccCCch
Q 000318 207 RLAMNVIEQC--AGKLEAGIKQFLVSSMSGDSRPGHSHIDYHE--------VIYDVYRCSPQILSGVVPYLTGELLTDQL 276 (1675)
Q Consensus 207 ~lA~~v~~~~--~dkL~~~I~qyf~~il~~~~~~~~~~~~~h~--------Li~eL~~~~P~lL~~ViPqLe~EL~sed~ 276 (1675)
++..-++|++ .+.+...+..++..+ . ............+ |+.+.+..+.+++...+-. |.+ .
T Consensus 212 ~~la~LvNK~~~~~~l~~~l~~~~~~~-~-~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~l----L~~--~ 283 (415)
T PF12460_consen 212 QLLASLVNKWPDDDDLDEFLDSLLQSI-S-SSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLEL----LSS--P 283 (415)
T ss_pred HHHHHHHcCCCChhhHHHHHHHHHhhh-c-ccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH----hCC--h
Confidence 6777788884 445666666666554 1 1111111112222 2222222233334443333 322 7
Q ss_pred HHHHHHHHHHHHhhcC-CCC----Cc--------hhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCC---CCh
Q 000318 277 DTRLKAVGLVGDLFAV-PGS----AN--------NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR---ADA 340 (1675)
Q Consensus 277 ~~Rl~At~llG~mfs~-~~s----~~--------a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~---~~~ 340 (1675)
.+...|.+.+|-+++. ++. +. =+-|-.+....+..+...+..+|..++.+..++|.+-|.. .+.
T Consensus 284 ~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l 363 (415)
T PF12460_consen 284 ELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPEL 363 (415)
T ss_pred hhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 7789999999999998 321 11 1234556667788888888889999999999999877752 345
Q ss_pred HHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCCCCH
Q 000318 341 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV 379 (1675)
Q Consensus 341 ~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~Vs~ 379 (1675)
.+|++-|.+.|-=+|..||.++..++..+.......+.+
T Consensus 364 ~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~ 402 (415)
T PF12460_consen 364 PTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISE 402 (415)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 678888888888788889999999998877766444443
No 45
>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix. The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. The domain is essential for the recruitment of proteins to double stranded breaks in DNA, which is mediated by interaction with methylated Lys 79 of histone H3 []. ; PDB: 3LGL_A 1XNI_B 3LGF_A 2G3R_A 2IG0_A 3LH0_A 1SSF_A.
Probab=94.40 E-value=0.07 Score=54.98 Aligned_cols=46 Identities=30% Similarity=0.435 Sum_probs=35.6
Q ss_pred CccccCceEEEecCCCCceEEEEEEEecCCCCeeEEEccCCcceeee
Q 000318 1373 IEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLR 1419 (1675)
Q Consensus 1373 ~~~lvG~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdDGd~E~l~ 1419 (1675)
|.++||.||---|-.+.-||.|+|+. +....+..|..|||.+..|.
T Consensus 1 ~~~~iG~rV~AkWS~n~yyY~G~I~~-~~~~~kykv~FdDG~~~~v~ 46 (122)
T PF09038_consen 1 GSSFIGLRVFAKWSDNGYYYPGKITS-DKGKNKYKVLFDDGYECRVL 46 (122)
T ss_dssp ---STT-EEEEESSTTSEEEEEEEEE-EETTTEEEEEETTS-EEEEE
T ss_pred CCcccccEEEEEEccCCcccCceEee-cCCCCeEEEEecCCccceec
Confidence 45799999999999777779999999 46778999999999986553
No 46
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=94.33 E-value=0.97 Score=51.52 Aligned_cols=98 Identities=17% Similarity=0.098 Sum_probs=63.9
Q ss_pred ccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHH-HHHHHhcccCCChhHHHHHHHHhHHHHhcCCC--C---CC--h
Q 000318 269 GELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSV-FSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPS--R---AD--A 340 (1675)
Q Consensus 269 ~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~l-w~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~--~---~~--~ 340 (1675)
..+......+|..|..+|-.|+..-+ -++.+ ......-.+++++.||..++++...++...+. . .. .
T Consensus 101 ~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~ 175 (228)
T PF12348_consen 101 KKLGDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFL 175 (228)
T ss_dssp HGGG---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHH
T ss_pred HHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchH
Confidence 33445566778888888888876422 12344 45555567888888988888888888887761 1 11 2
Q ss_pred HHHHHHHHhhhCCchhHHHHHHHHHHHHhhh
Q 000318 341 PQILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1675)
Q Consensus 341 ~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~ 371 (1675)
..+++.+...+.|++..||.++-.++..+..
T Consensus 176 ~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 176 KQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 4688999999999999999998888877643
No 47
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.28 E-value=4.9 Score=52.08 Aligned_cols=188 Identities=19% Similarity=0.160 Sum_probs=126.2
Q ss_pred hhhcccccCCchHHHHHHHHHHHHhhcCCCCCchh-----hcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhc----CC
Q 000318 265 PYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE-----QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT----DP 335 (1675)
Q Consensus 265 PqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~-----~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~----~p 335 (1675)
|-|.--|++.|-.+|+.|..++-+.|--.+.+... --..-|....+=..|--|.||-..++..-.+..- -|
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP 256 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP 256 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 67778899999999999999999999876655421 2233355556667899999999999887765532 25
Q ss_pred CCCChHHHHHHHHh-hhCCchhHHHHHHHHHHHHhhhhhcCCCCHH-HHHHHHHhhccCChhHHHHHHHHHHHHHHHHhh
Q 000318 336 SRADAPQILTALCD-RLLDFDENVRKQVVAVICDVACHALNSIPVE-TVKLVAERLRDKSVLVKRYTMERLADIFRGCCL 413 (1675)
Q Consensus 336 ~~~~~~ei~~~L~~-rL~D~DEkVR~aaV~ai~~la~~~l~~Vs~e-lL~~laeR~RDKK~~VRkeAm~~La~LY~~~~~ 413 (1675)
.. ...++++.+.+ --.|+--.||.+|++.+-.++.....+--.+ +|..|..-+.|+.-+||..+...|.+|=.+-.
T Consensus 257 ~~-i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra- 334 (1005)
T KOG1949|consen 257 PT-ILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRA- 334 (1005)
T ss_pred HH-HHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhhh-
Confidence 42 23445544443 4588999999999999988776554433223 46788888999999999999999998877532
Q ss_pred hccCCCcchhccccchHHHhhhhccCCCC--chhHHHHhhccCcCCCCCHH
Q 000318 414 RNFNGSINQNEFEWIPGKILRCLYDKDFG--SDTIESVLCGSLFPTGFSVK 462 (1675)
Q Consensus 414 ~~~~~~~~~~~~~wIP~~IL~~~Y~nd~~--~~lVE~vL~e~LlP~~~~~~ 462 (1675)
.+-+.-||--.+-.--..|-+ ..-+-+.++...||..-+.+
T Consensus 335 --------~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~k~ee 377 (1005)
T KOG1949|consen 335 --------AKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFLPVNKPEE 377 (1005)
T ss_pred --------hhhhccccHHHHHHHHhccccHHHHHHHHHHHHhhcCCCCcHH
Confidence 122334443333222233332 12344555667778765443
No 48
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.21 E-value=8.5 Score=50.78 Aligned_cols=375 Identities=13% Similarity=0.083 Sum_probs=195.1
Q ss_pred hhhhhhcccccCCchHHHHHHHH-HHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCCh
Q 000318 262 GVVPYLTGELLTDQLDTRLKAVG-LVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADA 340 (1675)
Q Consensus 262 ~ViPqLe~EL~sed~~~Rl~At~-llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~ 340 (1675)
+.+|.+-.+|.+.-...|..|++ +++.|--+. ++.. +|...++-..=.+.+.-.-+=.+....-..+|.. +
T Consensus 13 ~ei~elks~l~s~~~~kr~~a~kkvIa~Mt~G~--DvSs----lF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~--a 84 (734)
T KOG1061|consen 13 GEIPELKSQLNSQSKEKRKDAVKKVIAYMTVGK--DVSS----LFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL--A 84 (734)
T ss_pred hhchHHHHHhhhhhhhhHHHHHHHHHhcCccCc--chHh----hhHHHHhhcccCCchHHHHHHHHHHHhhccCchH--H
Confidence 34455555555554566666654 566666543 4454 4444555444445666666666666666667753 3
Q ss_pred HHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCc
Q 000318 341 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSI 420 (1675)
Q Consensus 341 ~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~Vs~elL~~laeR~RDKK~~VRkeAm~~La~LY~~~~~~~~~~~~ 420 (1675)
.-.+..+.+-.-|+++.+|.-|+...| +-....+.+-+..-+..-.+|+.+-||+.|..+++++|.....-+.
T Consensus 85 ~~avnt~~kD~~d~np~iR~lAlrtm~---~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~---- 157 (734)
T KOG1061|consen 85 ILAVNTFLKDCEDPNPLIRALALRTMG---CLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVE---- 157 (734)
T ss_pred HhhhhhhhccCCCCCHHHHHHHhhcee---eEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhcc----
Confidence 456788888899999999998655543 3333444455667778888999999999999999999985322111
Q ss_pred chhccccchHHHhhhhccCCCCc-----hhHHHHhhcc--CcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 000318 421 NQNEFEWIPGKILRCLYDKDFGS-----DTIESVLCGS--LFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRL 493 (1675)
Q Consensus 421 ~~~~~~wIP~~IL~~~Y~nd~~~-----~lVE~vL~e~--LlP~~~~~~~R~~~ll~l~~~LD~~~~kal~~il~~k~~l 493 (1675)
-..+++.+=.++.+.++.. ..+..+.... -.++.++ ..+..+++....-+++.+. ..|+.
T Consensus 158 ----~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~-~~~~~~lL~al~ec~EW~q---i~IL~----- 224 (734)
T KOG1061|consen 158 ----DSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELN-PQLINKLLEALNECTEWGQ---IFILD----- 224 (734)
T ss_pred ----ccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCccccc-HHHHHHHHHHHHHhhhhhH---HHHHH-----
Confidence 1222333333333222220 0111111111 1111111 2345555544444444322 11111
Q ss_pred HHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCC--chHHHHHHHHHHhhccHHHHHHHHH-------Hhc--CC
Q 000318 494 QQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAE--PAKAEENFLILDQLKDANVWKILMN-------LLD--SN 562 (1675)
Q Consensus 494 ~~~~~~~l~l~~~~~~~d~~ei~~kL~~~i~~Ls~~fPD--p~Ka~e~L~kf~klnD~Ri~kLLk~-------~id--p~ 562 (1675)
++..+.-.++.+.+.-+..+.-+|.- .+. -.-+...+..+.+......-.+++. +++ ++
T Consensus 225 ---------~l~~y~p~d~~ea~~i~~r~~p~Lqh-~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~e 294 (734)
T KOG1061|consen 225 ---------CLAEYVPKDSREAEDICERLTPRLQH-ANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSESE 294 (734)
T ss_pred ---------HHHhcCCCCchhHHHHHHHhhhhhcc-CCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccch
Confidence 11111111111111111111111100 000 0011122222222111100011111 122 23
Q ss_pred CCHHHHHHHHHHHHHHhc---CC-Cc----hH--HHHHHHHHhhhccccChhHHHHHHHHHHhhcccchhhhHHHHHHHH
Q 000318 563 TSFDQAFTGRDDLLKILG---AK-HR----LY--DFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDIL 632 (1675)
Q Consensus 563 td~~t~~~a~kELlkkL~---~~-~~----~~--d~l~~Ll~R~S~li~Nks~V~~LL~~v~~~~~~~~~~~~~~a~eLL 632 (1675)
..|-.++|+.--+.++-+ .+ .. .. -+++..-..+-..+.|.+++..++..+.......+..+...+.+-+
T Consensus 295 ~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIrai 374 (734)
T KOG1061|consen 295 IQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAI 374 (734)
T ss_pred hhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHh
Confidence 445455555444433322 11 00 00 1355555567777889999999999887665555555667777888
Q ss_pred HHHHhhCCcCccccHHHHHHHHhhccccchHhHHHHHHHhhcc
Q 000318 633 GILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGT 675 (1675)
Q Consensus 633 ~~IS~~~P~lFk~~v~~Li~lL~~~~~~~~~~aLkiLak~~k~ 675 (1675)
-.++...+.. -+++..|.+++.-.-..++.+++.++..+...
T Consensus 375 g~~aik~e~~-~~cv~~lLell~~~~~yvvqE~~vvi~dilRk 416 (734)
T KOG1061|consen 375 GRLAIKAEQS-NDCVSILLELLETKVDYVVQEAIVVIRDILRK 416 (734)
T ss_pred hhhhhhhhhh-hhhHHHHHHHHhhcccceeeehhHHHHhhhhc
Confidence 8888888888 77899999999965555677777877766543
No 49
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.20 E-value=13 Score=49.81 Aligned_cols=129 Identities=13% Similarity=0.162 Sum_probs=100.8
Q ss_pred ccCCchHHHHHHHH-HHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHh
Q 000318 271 LLTDQLDTRLKAVG-LVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCD 349 (1675)
Q Consensus 271 L~sed~~~Rl~At~-llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~ 349 (1675)
|.+-+...|+.|.+ ++..|..+. ++..=+|++-+.|..| +++++..+=-+...+-..+|. ++--.++.+.+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~--dmssLf~dViK~~~tr----d~ElKrL~ylYl~~yak~~P~--~~lLavNti~k 99 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGE--DMSSLFPDVIKNVATR----DVELKRLLYLYLERYAKLKPE--LALLAVNTIQK 99 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHhccCHH--HHHHHHHHHHh
Confidence 66777878888775 567777654 5788888888888854 788888777776666667773 44456789999
Q ss_pred hhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000318 350 RLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1675)
Q Consensus 350 rL~D~DEkVR~aaV~ai~~la~~~l~~Vs~elL~~laeR~RDKK~~VRkeAm~~La~LY~~ 410 (1675)
=|.|+++.+|..|+.+++.+-.. .+-+-++..+..-+-|+.+-||+.|+-+++++|+.
T Consensus 100 Dl~d~N~~iR~~AlR~ls~l~~~---el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l 157 (757)
T COG5096 100 DLQDPNEEIRGFALRTLSLLRVK---ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL 157 (757)
T ss_pred hccCCCHHHHHHHHHHHHhcChH---HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc
Confidence 99999999999987777554332 33445678889999999999999999999999973
No 50
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.69 E-value=0.64 Score=55.69 Aligned_cols=97 Identities=19% Similarity=0.246 Sum_probs=77.2
Q ss_pred ccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCC-----------CC
Q 000318 271 LLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR-----------AD 339 (1675)
Q Consensus 271 L~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~-----------~~ 339 (1675)
+++.+..+|..|++.|| +++--+-.++.+|=.+|...+.+ | ...||+.+++.+-+++..|... ..
T Consensus 36 v~~~~~~vR~~al~cLG-l~~Lld~~~a~~~l~l~~~~~~~--~-~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~ 111 (298)
T PF12719_consen 36 VQSSDPAVRELALKCLG-LCCLLDKELAKEHLPLFLQALQK--D-DEEVKITALKALFDLLLTHGIDIFDSESDNDESVD 111 (298)
T ss_pred hcCCCHHHHHHHHHHHH-HHHHhChHHHHHHHHHHHHHHHh--C-CHHHHHHHHHHHHHHHHHcCchhccchhccCccch
Confidence 45689999999999999 56655557888776666666633 5 9999999999999999988421 12
Q ss_pred hHHHHHHHHhhhCCchhHHHHHHHHHHHHhhh
Q 000318 340 APQILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1675)
Q Consensus 340 ~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~ 371 (1675)
...+.+.|..-|.+.++.||..||+.+|.+-.
T Consensus 112 ~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 112 SKSLLKILTKFLDSENPELQAIAVEGLCKLLL 143 (298)
T ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 34688888888988899999999999988654
No 51
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=93.44 E-value=0.097 Score=52.34 Aligned_cols=106 Identities=12% Similarity=0.070 Sum_probs=54.7
Q ss_pred hhhhhcccccCCchHHHHHHHHHHHHhhcCCCCCchh-hcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCC--
Q 000318 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE-QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRAD-- 339 (1675)
Q Consensus 263 ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~-~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~-- 339 (1675)
++|.|-.-|...+..+|..|..+|+.|.......... .....+..++.=++|.++.||..++.+..++....+....
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 6667777777788999999999999988762100000 0113344444444455555555555555544433221000
Q ss_pred -hHHHHHHHHhhhCCchhHHHHHHHHHHHH
Q 000318 340 -APQILTALCDRLLDFDENVRKQVVAVICD 368 (1675)
Q Consensus 340 -~~ei~~~L~~rL~D~DEkVR~aaV~ai~~ 368 (1675)
...+++.|...|.+.|..||..++.+++.
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~ 117 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSN 117 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 01133444444455555555554444443
No 52
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.44 E-value=1.2 Score=60.34 Aligned_cols=151 Identities=15% Similarity=0.180 Sum_probs=107.3
Q ss_pred hHHHHHHHHHh---hcc--hhhhhhhhhhcccc----cCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccC
Q 000318 244 DYHEVIYDVYR---CSP--QILSGVVPYLTGEL----LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTD 314 (1675)
Q Consensus 244 ~~h~Li~eL~~---~~P--~lL~~ViPqLe~EL----~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D 314 (1675)
+.|++|..+.. ..| .+|....|.+..-- ...++.++..||-.||+|.-- ++.|-..|-+++-.-+.+.
T Consensus 896 d~~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i-Sa~fces~l~llftimeks-- 972 (1251)
T KOG0414|consen 896 DLADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI-SAEFCESHLPLLFTIMEKS-- 972 (1251)
T ss_pred hHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcC--
Confidence 46666665542 233 56666777776544 345699999999999999865 3456555444444444432
Q ss_pred CChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCCh
Q 000318 315 RIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSV 394 (1675)
Q Consensus 315 ~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~Vs~elL~~laeR~RDKK~ 394 (1675)
.+|-||.-+|=.++++...-|.. +......|-.||+|.+..||..|+.++.-+.....-.|-. .+..+|--+-|-..
T Consensus 973 p~p~IRsN~VvalgDlav~fpnl--ie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKG-ql~eMA~cl~D~~~ 1049 (1251)
T KOG0414|consen 973 PSPRIRSNLVVALGDLAVRFPNL--IEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKG-QLSEMALCLEDPNA 1049 (1251)
T ss_pred CCceeeecchheccchhhhcccc--cchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcc-cHHHHHHHhcCCcH
Confidence 57899999999999999887754 4468899999999999999999999998776655433322 24566777888887
Q ss_pred hHHHHH
Q 000318 395 LVKRYT 400 (1675)
Q Consensus 395 ~VRkeA 400 (1675)
.||.-|
T Consensus 1050 ~IsdlA 1055 (1251)
T KOG0414|consen 1050 EISDLA 1055 (1251)
T ss_pred HHHHHH
Confidence 766544
No 53
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=93.42 E-value=6.8 Score=49.85 Aligned_cols=303 Identities=14% Similarity=0.169 Sum_probs=169.9
Q ss_pred HHHHHhhhcCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHH-HHHHHhhhhhheeccCCchHHHHHHHHHHHH
Q 000318 79 CICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVI-LETLAKYRSCVVMLDLECDELVNEMYSTFFA 157 (1675)
Q Consensus 79 CLadIlRI~APdAPytd~qLkdIF~l~v~qf~~L~d~~~p~f~q~~~L-LE~LA~vks~vl~~DL~~~~Li~~lF~~ff~ 157 (1675)
.|+.|+|+.+----|...+.+.+|--|..-|.+ .++|..|++|+ ++-|+.+--=|+| -.=...=+
T Consensus 44 lls~l~yll~tge~f~e~~at~lff~i~KlFQh----kd~~Lrq~VY~aIkelS~~tedvlm----------~tssiMkD 109 (898)
T COG5240 44 LLSNLFYLLSTGELFPEATATNLFFAILKLFQH----KDLYLRQCVYSAIKELSKLTEDVLM----------GTSSIMKD 109 (898)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHhhcchhhhH----------HHHHHHHh
Confidence 367889998888888888888888888777753 67899999886 4555543222221 11111111
Q ss_pred hhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHH-hcC---CCcH----HHHHH---HHHHHHHhhhhhHHHHHH
Q 000318 158 VASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSA-LGR---NKND----TARRL---AMNVIEQCAGKLEAGIKQ 226 (1675)
Q Consensus 158 ~v~~~~~~~V~~~m~~IL~~vI~Ese~vp~~vLd~IL~~-l~~---~~~~----~a~~l---A~~v~~~~~dkL~~~I~q 226 (1675)
+.++-+..+......-|..||++... +. ..-+|++ |.. .... .||.| +...+.+-.+.-|.+|..
T Consensus 110 -~~~g~~~~~kp~AiRsL~~Vid~~tv-~~--~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~ 185 (898)
T COG5240 110 -LNGGVPDDVKPMAIRSLFSVIDGETV-YD--FERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLD 185 (898)
T ss_pred -hccCCccccccHHHHHHHHhcCcchh-hh--HHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhh
Confidence 22333334444444455555555321 11 1112211 110 1111 22322 111111111111222211
Q ss_pred ---HHHHhhcCC-CC-CCCCcc-hHH--HHHHHHHhhcchhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCCCCCch
Q 000318 227 ---FLVSSMSGD-SR-PGHSHI-DYH--EVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANN 298 (1675)
Q Consensus 227 ---yf~~il~~~-~~-~~~~~~-~~h--~Li~eL~~~~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a 298 (1675)
|=+ ..|. +. |....+ ++| .|+|++-+..--.++..+..+-..+...|-.--.+-++.+..++-. .+++.
T Consensus 186 l~q~p~--~~~n~gy~Pn~~~isqYHalGlLyq~kr~dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~-n~q~~ 262 (898)
T COG5240 186 LKQFPN--QHGNEGYEPNGNPISQYHALGLLYQSKRTDKMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKE-NSQAL 262 (898)
T ss_pred HhhCcC--ccCCcccCCCCChHHHHHHHHHHHHHhcccHHHHHHHHHHhhcccccccchhheehHHHHHHHHHh-ChHHH
Confidence 100 0111 11 222222 455 6799999988777777777766666555544445556666666655 45778
Q ss_pred hhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCCCC
Q 000318 299 EQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIP 378 (1675)
Q Consensus 299 ~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~Vs 378 (1675)
.+..+..+.||+-. -..|-++....+-.+-..|-......+.+..|+-.|.-+.---|.+|...+.++|...++.|.
T Consensus 263 ~q~rpfL~~wls~k---~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~ 339 (898)
T COG5240 263 LQLRPFLNSWLSDK---FEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS 339 (898)
T ss_pred HHHHHHHHHHhcCc---chhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceee
Confidence 88888889998753 344544444443332223322234557788999999999999999999999999998888775
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHH
Q 000318 379 VETVKLVAERLRDKSVLVKRYTMERLAD 406 (1675)
Q Consensus 379 ~elL~~laeR~RDKK~~VRkeAm~~La~ 406 (1675)
.-- ..+-..+-|-+..|-.+||+.|-+
T Consensus 340 vcN-~evEsLIsd~Nr~IstyAITtLLK 366 (898)
T COG5240 340 VCN-KEVESLISDENRTISTYAITTLLK 366 (898)
T ss_pred ecC-hhHHHHhhcccccchHHHHHHHHH
Confidence 421 123455677777888888887754
No 54
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.07 E-value=0.24 Score=49.88 Aligned_cols=66 Identities=20% Similarity=0.169 Sum_probs=50.4
Q ss_pred HHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCCC---CHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000318 341 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI---PVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1675)
Q Consensus 341 ~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V---s~elL~~laeR~RDKK~~VRkeAm~~La~L 407 (1675)
.+|++.+..++.|+|.+||..||+++..++...-..+ =.+++..|..++.|-...||..| +.|-++
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRL 94 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHH
Confidence 4788888889999999999999999988876443332 13567788889999999998877 555444
No 55
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.02 E-value=59 Score=46.32 Aligned_cols=310 Identities=15% Similarity=0.212 Sum_probs=176.5
Q ss_pred HHHHHHHHhhhcCCCCCCCh-hHHHHHHHHHHHhccCCCCCCCCChhhH--H---HHHHHHHhhhhhheeccCCchHHHH
Q 000318 76 VATCICEITRITAPEAPYSD-DVLKDIFQLIVGTFSGLKDTGGPSFGRR--V---VILETLAKYRSCVVMLDLECDELVN 149 (1675)
Q Consensus 76 vAcCLadIlRI~APdAPytd-~qLkdIF~l~v~qf~~L~d~~~p~f~q~--~---~LLE~LA~vks~vl~~DL~~~~Li~ 149 (1675)
.+.|=-|-.++ -|+-|+-. ..=.+.+.+|...|-.+-+..+|.+.|. + .+...++.-+..++++ .++.
T Consensus 790 ~~~~~~ds~~l-e~~~~~~~~~~n~~~~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~----~eI~- 863 (1702)
T KOG0915|consen 790 YTALGTDSNFL-EEKTDTEEDKVNDTRETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLML----KEIQ- 863 (1702)
T ss_pred hhhcccchhhc-ccccchhhcccCCccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhcc----HHHH-
Confidence 34455566666 33333321 1123455666666655555677777664 2 3344555555566554 3433
Q ss_pred HHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccc-cccHHHHHHHHHHhcC--------------------CCcH--HHH
Q 000318 150 EMYSTFFAVASDDHPESVLSSMQTIMIVLLEESE-DIQEDLLVILLSALGR--------------------NKND--TAR 206 (1675)
Q Consensus 150 ~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese-~vp~~vLd~IL~~l~~--------------------~~~~--~a~ 206 (1675)
.-|..++. -++++.+.|.+-= |.-|-+=++ ..-.++++-+++.|.. +++. ..-
T Consensus 864 ~aF~~~Ls-d~dEf~QDvAsrG---lglVYelgd~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~i 939 (1702)
T KOG0915|consen 864 EAFSHLLS-DNDEFSQDVASRG---LGLVYELGDSSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKI 939 (1702)
T ss_pred HHHHHHhc-ccHHHHHHHHhcC---ceEEEecCCchhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcc
Confidence 66666654 2333333222111 111111111 2333444444444311 1111 112
Q ss_pred HHHHHHHHHhhhhhHHHHH-HHHHHhhcC------C-CCC---------CCCcch--HHHHHHHHHhhcchhhhhhhhhh
Q 000318 207 RLAMNVIEQCAGKLEAGIK-QFLVSSMSG------D-SRP---------GHSHID--YHEVIYDVYRCSPQILSGVVPYL 267 (1675)
Q Consensus 207 ~lA~~v~~~~~dkL~~~I~-qyf~~il~~------~-~~~---------~~~~~~--~h~Li~eL~~~~P~lL~~ViPqL 267 (1675)
.-=++||+-.+|-=||.+- +|+ +.-.. . +.- ....+. +-.||-.|||+-
T Consensus 940 sTYKELc~LASdl~qPdLVYKFM-~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~----------- 1007 (1702)
T KOG0915|consen 940 STYKELCNLASDLGQPDLVYKFM-QLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQ----------- 1007 (1702)
T ss_pred hHHHHHHHHHhhcCChHHHHHHH-HHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhc-----------
Confidence 2236889988888888764 444 22211 0 000 001111 234555555542
Q ss_pred cccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCC---CChHHHH
Q 000318 268 TGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR---ADAPQIL 344 (1675)
Q Consensus 268 e~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~---~~~~ei~ 344 (1675)
=..+..++-.-|..-+-++.++......-+.+++.+.|.-..++.=-||.+++-+..++|..+|.. +...+++
T Consensus 1008 ----yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw 1083 (1702)
T KOG0915|consen 1008 ----YDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELW 1083 (1702)
T ss_pred ----cCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 235677777777778888877654445566899999999999999999999999999999887742 3345788
Q ss_pred HHHHhhhCCchhHHHHHHHHHHHHhhhhhcCC------C-CHHHHHH-----HHHhhccCChhHHHHHHHHHHHHHHHH
Q 000318 345 TALCDRLLDFDENVRKQVVAVICDVACHALNS------I-PVETVKL-----VAERLRDKSVLVKRYTMERLADIFRGC 411 (1675)
Q Consensus 345 ~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~------V-s~elL~~-----laeR~RDKK~~VRkeAm~~La~LY~~~ 411 (1675)
.++-+-.=|-.|.||.|+=++...++.-.... . ..+++.. +.+-+--|-..||+-+|..|.+|-+.+
T Consensus 1084 ~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kss 1162 (1702)
T KOG0915|consen 1084 EAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSS 1162 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhc
Confidence 88888888999999998766655554322211 1 1133432 233344556799999999999998875
No 56
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=92.99 E-value=0.85 Score=50.58 Aligned_cols=86 Identities=20% Similarity=0.176 Sum_probs=71.2
Q ss_pred HHHHHHHhhcchhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHHH
Q 000318 247 EVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEH 326 (1675)
Q Consensus 247 ~Li~eL~~~~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~ 326 (1675)
-.+-.|..-.|.++-..+|.|..-|..+++.+|..|...|.+++.. ++.+-.+.++..++.-..|.++.||.....+
T Consensus 10 ~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~ 86 (178)
T PF12717_consen 10 IALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DMIKVKGQLFSRILKLLVDENPEIRSLARSF 86 (178)
T ss_pred HHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---CceeehhhhhHHHHHHHcCCCHHHHHHHHHH
Confidence 3455666777899999999999999999999999999999999875 5777778888888999999999999888888
Q ss_pred hHHHHhc-CC
Q 000318 327 VKSCLLT-DP 335 (1675)
Q Consensus 327 ~~~iL~~-~p 335 (1675)
...++.. +|
T Consensus 87 ~~e~~~~~~~ 96 (178)
T PF12717_consen 87 FSELLKKRNP 96 (178)
T ss_pred HHHHHHhccc
Confidence 8887776 44
No 57
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.99 E-value=7.9 Score=50.20 Aligned_cols=134 Identities=18% Similarity=0.220 Sum_probs=89.4
Q ss_pred HHHHHHHHHhhcchhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHH
Q 000318 245 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVL 324 (1675)
Q Consensus 245 ~h~Li~eL~~~~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~V 324 (1675)
.-..+..|-...|.+.+--+-++..-|.++.-..|-..++..|.+...- + . ++ +|+
T Consensus 282 islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~----~--------------~--d~----qm~ 337 (1128)
T COG5098 282 ISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHF----K--------------K--DG----QMV 337 (1128)
T ss_pred HHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH----h--------------c--ch----hhH
Confidence 3445666677777777776666666666777777766666666555421 0 0 11 455
Q ss_pred HHhHHHHhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCCC--CHHHHHHHHHhhccCChhHHHHHHH
Q 000318 325 EHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI--PVETVKLVAERLRDKSVLVKRYTME 402 (1675)
Q Consensus 325 e~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V--s~elL~~laeR~RDKK~~VRkeAm~ 402 (1675)
++.++- ..+++.-|.+||.|+-.-+|..|++++..+--.....+ -.++.+.++.|+-||..-||+.|+.
T Consensus 338 e~~~~~---------~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaik 408 (1128)
T COG5098 338 EHYKQK---------LNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIK 408 (1128)
T ss_pred hhHHHH---------HHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 554432 24678888888888888888887777654332222222 3367888999999999999999999
Q ss_pred HHHHHHHHH
Q 000318 403 RLADIFRGC 411 (1675)
Q Consensus 403 ~La~LY~~~ 411 (1675)
.+++|.-.+
T Consensus 409 l~SkLL~~H 417 (1128)
T COG5098 409 LCSKLLMRH 417 (1128)
T ss_pred HHHHHHhcC
Confidence 999887654
No 58
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=92.43 E-value=42 Score=43.20 Aligned_cols=51 Identities=29% Similarity=0.327 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccccchHhHHHHHHHhhc
Q 000318 624 FMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGG 674 (1675)
Q Consensus 624 ~~~~a~eLL~~IS~~~P~lFk~~v~~Li~lL~~~~~~~~~~aLkiLak~~k 674 (1675)
..-+|+++|+.+|..+|+.-..|-.++-.++.+.|-.+..-++-+|-+.|.
T Consensus 319 ~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt 369 (898)
T COG5240 319 LRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGT 369 (898)
T ss_pred HHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCc
Confidence 345689999999999999999888888888888887666667777766663
No 59
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.37 E-value=2.3 Score=54.78 Aligned_cols=110 Identities=24% Similarity=0.289 Sum_probs=88.6
Q ss_pred HHHhhcchhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHH
Q 000318 251 DVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSC 330 (1675)
Q Consensus 251 eL~~~~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~i 330 (1675)
+.-...|+-|...++.|++-|+...+-.|.+|.+.+..+|--+ +.+.......-..-.+|..|++.-||...++.+..+
T Consensus 335 qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~-sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkL 413 (1128)
T COG5098 335 QMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLN-SKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKL 413 (1128)
T ss_pred hhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCc-ccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 3556678888999999999999999999999999999999875 467777778888889999999999999999999999
Q ss_pred HhcCCCCCC-----------------hHHHH---HHHHhhhCCchhHHHHH
Q 000318 331 LLTDPSRAD-----------------APQIL---TALCDRLLDFDENVRKQ 361 (1675)
Q Consensus 331 L~~~p~~~~-----------------~~ei~---~~L~~rL~D~DEkVR~a 361 (1675)
|+.||-..+ +.++. +.+++++.|.+..|-..
T Consensus 414 L~~HPF~~~h~~~l~~~~wek~L~~~E~qlNslk~~~qe~l~D~E~Eveqd 464 (1128)
T COG5098 414 LMRHPFASEHGSQLRLTLWEKNLGSAENQLNSLKSGLQETLCDGEKEVEQD 464 (1128)
T ss_pred HhcCChhhhccchhhhHHHHhhcchhHhHhhccchhhhccccchHHhhhhh
Confidence 999984211 01221 35566778887777644
No 60
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=91.84 E-value=20 Score=48.17 Aligned_cols=103 Identities=17% Similarity=0.129 Sum_probs=86.3
Q ss_pred HHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCCCCHH-HH
Q 000318 304 VFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE-TV 382 (1675)
Q Consensus 304 lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~Vs~e-lL 382 (1675)
.-+.|++=+.|.++.||...+.....+ +.......++..+.+++.|+..-||..|+-+|..+-.-+.+.++.. ..
T Consensus 93 avNti~kDl~d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~ 168 (757)
T COG5096 93 AVNTIQKDLQDPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLI 168 (757)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHH
Confidence 356788889999999999999887542 1223456788999999999999999999999988776677777776 77
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000318 383 KLVAERLRDKSVLVKRYTMERLADIFRG 410 (1675)
Q Consensus 383 ~~laeR~RDKK~~VRkeAm~~La~LY~~ 410 (1675)
..+.+.+.|-.+.|=..|+.+|..++..
T Consensus 169 ~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 169 DILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 7788999999999999999999999987
No 61
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=91.27 E-value=0.3 Score=38.69 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=22.9
Q ss_pred HHHHHHhhhCCchhHHHHHHHHHHHHhhh
Q 000318 343 ILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1675)
Q Consensus 343 i~~~L~~rL~D~DEkVR~aaV~ai~~la~ 371 (1675)
|++.|...+.|++++||.+|+.+++.++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 46777888889999999999988887764
No 62
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=90.92 E-value=1.2e+02 Score=45.45 Aligned_cols=141 Identities=11% Similarity=0.091 Sum_probs=92.0
Q ss_pred hhhcccccCCchHHHHHHHHHHHHhhcCCCCCch-----hhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCC
Q 000318 265 PYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANN-----EQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRAD 339 (1675)
Q Consensus 265 PqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a-----~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~ 339 (1675)
+.|=.-|...+.+++..|+..|..+-.... +.. .---+..-.||+. -+..+|...+.....+-..+.....
T Consensus 407 k~LV~LL~~~~~evQ~~Av~aL~~L~~~~~-e~~~aIi~~ggIp~LV~LL~s---~s~~iQ~~A~~~L~nLa~~ndenr~ 482 (2102)
T PLN03200 407 KVLVGLITMATADVQEELIRALSSLCCGKG-GLWEALGGREGVQLLISLLGL---SSEQQQEYAVALLAILTDEVDESKW 482 (2102)
T ss_pred hhhhhhhccCCHHHHHHHHHHHHHHhCCCH-HHHHHHHHcCcHHHHHHHHcC---CCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 333444666778999999999988775532 110 1112344455554 4678887777766654333321000
Q ss_pred ---hHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcC---CC-CHHHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 000318 340 ---APQILTALCDRLLDFDENVRKQVVAVICDVACHALN---SI-PVETVKLVAERLRDKSVLVKRYTMERLADIFR 409 (1675)
Q Consensus 340 ---~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~---~V-s~elL~~laeR~RDKK~~VRkeAm~~La~LY~ 409 (1675)
....+..|...|..++.++|.+||-+++.++...-. .| ....+..|.+.+++....+|+.|...|++|-.
T Consensus 483 aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~ 559 (2102)
T PLN03200 483 AITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVR 559 (2102)
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 013457888889999999999999999998873211 12 12345566777888889999999999998854
No 63
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=90.72 E-value=10 Score=45.54 Aligned_cols=126 Identities=17% Similarity=0.231 Sum_probs=82.3
Q ss_pred HHHHHHhhcCCCCCchhhcH--HHHHHHHhc-ccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCchhHHH
Q 000318 283 VGLVGDLFAVPGSANNEQFH--SVFSEFLKR-LTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVR 359 (1675)
Q Consensus 283 t~llG~mfs~~~s~~a~~y~--~lw~~fL~R-~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR 359 (1675)
...++.|+......+..... +++..++-. ..-.++.||..-+++.+-+-+-+. ..+.+-+.-+...+..-++.||
T Consensus 4 L~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~--~~a~~~l~l~~~~~~~~~~~v~ 81 (298)
T PF12719_consen 4 LSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK--ELAKEHLPLFLQALQKDDEEVK 81 (298)
T ss_pred HHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHhCCHHHH
Confidence 34445555443322222222 667766622 233467999999999986555443 3345555555555544499999
Q ss_pred HHHHHHHHHhhhh-hcCCC---C--------HHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000318 360 KQVVAVICDVACH-ALNSI---P--------VETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1675)
Q Consensus 360 ~aaV~ai~~la~~-~l~~V---s--------~elL~~laeR~RDKK~~VRkeAm~~La~LY~~ 410 (1675)
..++++++|+... .+..+ + ..+++.+..-+.+-...||..|.+++++|+-.
T Consensus 82 ~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 82 ITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred HHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 9999999999863 22222 2 24667777777777889999999999998875
No 64
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=90.65 E-value=81 Score=43.00 Aligned_cols=100 Identities=15% Similarity=0.080 Sum_probs=67.4
Q ss_pred hhhcccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHH
Q 000318 265 PYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQIL 344 (1675)
Q Consensus 265 PqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~ 344 (1675)
|.+.+|-.-++.+.|.+..+-=...+-. ..++.-..+|+-.-.|..|+.+.||...+-....||..... .....|+
T Consensus 437 s~~~~e~e~dn~~~~s~s~e~qk~~k~~---~~v~evg~~~~~~~~rClDkaaavR~~al~s~tk~l~l~~~-~~~~sIl 512 (1529)
T KOG0413|consen 437 SDSDEENEGDNEENVSKSKEEQKKEKKA---KEVKEVGVLYNIVYMRCLDKAAAVRLHALNSLTKILQLQSH-REAFSIL 512 (1529)
T ss_pred CchHhhhcccchhhhhhHHHHHHHhhhh---hhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc-cchHHHH
Confidence 3344444445555554443322222221 23444457888889999999999999999998888875533 3456899
Q ss_pred HHHHhhhCCchhHHHHHHHHHHHH
Q 000318 345 TALCDRLLDFDENVRKQVVAVICD 368 (1675)
Q Consensus 345 ~~L~~rL~D~DEkVR~aaV~ai~~ 368 (1675)
.++..--+|+---||.+++-++..
T Consensus 513 ~~~inS~~d~~fs~ves~~~~~~~ 536 (1529)
T KOG0413|consen 513 CATINSEMDEKFSAVESLEDLNVS 536 (1529)
T ss_pred HHhcCCccccchhHHHhchhhhhc
Confidence 999888899988888887776643
No 65
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.60 E-value=7.8 Score=51.10 Aligned_cols=259 Identities=19% Similarity=0.177 Sum_probs=144.1
Q ss_pred hhhhcCCCcchhHHHHHHHHHH----hhhcCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhh-hhh
Q 000318 62 PVLLKHQDKDVKLLVATCICEI----TRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKY-RSC 136 (1675)
Q Consensus 62 ~~LL~HkD~~Vr~~vAcCLadI----lRI~APdAPytd~qLkdIF~l~v~qf~~L~d~~~p~f~q~~~LLE~LA~v-ks~ 136 (1675)
...|.||..-|-.=+|--++.+ -|+.+| .. .+.++|++. |....--..+-+|-.+|-. =.-
T Consensus 251 ~s~l~~K~emV~~EaArai~~l~~~~~r~l~p----av----s~Lq~flss------p~~~lRfaAvRtLnkvAm~~P~~ 316 (865)
T KOG1078|consen 251 ESCLRHKSEMVIYEAARAIVSLPNTNSRELAP----AV----SVLQLFLSS------PKVALRFAAVRTLNKVAMKHPQA 316 (865)
T ss_pred HHHHhchhHHHHHHHHHHHhhccccCHhhcch----HH----HHHHHHhcC------cHHHHHHHHHHHHHHHHHhCCcc
Confidence 3556777777766666555443 244455 22 234444432 2222212234455555522 233
Q ss_pred heeccCCchHHHHHH--------HHHHHHhhcCCChhhHHHHHHHHHHH---HhcccccccHHHHHHHHHHhcCCCcHHH
Q 000318 137 VVMLDLECDELVNEM--------YSTFFAVASDDHPESVLSSMQTIMIV---LLEESEDIQEDLLVILLSALGRNKNDTA 205 (1675)
Q Consensus 137 vl~~DL~~~~Li~~l--------F~~ff~~v~~~~~~~V~~~m~~IL~~---vI~Ese~vp~~vLd~IL~~l~~~~~~~a 205 (1675)
|.+|.++-+.||.+. ..+++.. +...+|...|-.|-.. |=+|.--|--+-+..+...+.
T Consensus 317 v~~cN~elE~lItd~NrsIat~AITtLLKT---G~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp------- 386 (865)
T KOG1078|consen 317 VTVCNLDLESLITDSNRSIATLAITTLLKT---GTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFP------- 386 (865)
T ss_pred ccccchhHHhhhcccccchhHHHHHHHHHh---cchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhcc-------
Confidence 445555544444332 2233332 3345555555555443 344433343333333333332
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhcchhhhhhhhhhcccccCCchHHHHHHHHH
Q 000318 206 RRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGL 285 (1675)
Q Consensus 206 ~~lA~~v~~~~~dkL~~~I~qyf~~il~~~~~~~~~~~~~h~Li~eL~~~~P~lL~~ViPqLe~EL~sed~~~Rl~At~l 285 (1675)
+....+-.|+.++|.+++. .+-.....+.|..+-+..|+.=-.-+-.|..-. +|-+.+..||+.
T Consensus 387 -------------~k~~~~m~FL~~~Lr~eGg-~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefI--EDce~~~i~~rI 450 (865)
T KOG1078|consen 387 -------------RKHTVMMNFLSNMLREEGG-FEFKRAIVDAIIDIIEENPDSKERGLEHLCEFI--EDCEFTQIAVRI 450 (865)
T ss_pred -------------HHHHHHHHHHHHHHHhccC-chHHHHHHHHHHHHHHhCcchhhHHHHHHHHHH--HhccchHHHHHH
Confidence 2334455677777765422 111223567777788878875444333333222 455678899999
Q ss_pred HHHhhcCCCCCchhhcHHHHHHH-HhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHH
Q 000318 286 VGDLFAVPGSANNEQFHSVFSEF-LKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVA 364 (1675)
Q Consensus 286 lG~mfs~~~s~~a~~y~~lw~~f-L~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ 364 (1675)
|+.+--. | -....|+-|-.| .+|..=-+..||.+.|.++..|....+.. .+-|...|.++++|.|+.||-.|--
T Consensus 451 LhlLG~E-g--P~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l--~~sI~vllkRc~~D~DdevRdrAtf 525 (865)
T KOG1078|consen 451 LHLLGKE-G--PKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVL--LPSILVLLKRCLNDSDDEVRDRATF 525 (865)
T ss_pred HHHHhcc-C--CCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCc--cccHHHHHHHHhcCchHHHHHHHHH
Confidence 9866543 2 123445555544 46777678999999999999999766643 3478899999999999999988533
Q ss_pred H
Q 000318 365 V 365 (1675)
Q Consensus 365 a 365 (1675)
.
T Consensus 526 ~ 526 (865)
T KOG1078|consen 526 Y 526 (865)
T ss_pred H
Confidence 3
No 66
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=90.21 E-value=3.7 Score=54.04 Aligned_cols=128 Identities=17% Similarity=0.262 Sum_probs=77.4
Q ss_pred cchhhhhhhhhhccccc----CCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhccc---CCChhHHHHHHHHhH
Q 000318 256 SPQILSGVVPYLTGELL----TDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLT---DRIVAVRMSVLEHVK 328 (1675)
Q Consensus 256 ~P~lL~~ViPqLe~EL~----sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~---D~s~~VR~~~Ve~~~ 328 (1675)
.+.+..-+++.|..+|. ..+...++.+.+.||.| +. |.+...++.-.. +.+..||+++|.+..
T Consensus 480 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~-g~---------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr 549 (618)
T PF01347_consen 480 SRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL-GH---------PESIPVLLPYIEGKEEVPHFIRVAAIQALR 549 (618)
T ss_dssp -SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTT
T ss_pred chhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc-CC---------chhhHHHHhHhhhccccchHHHHHHHHHHH
Confidence 45566667777777766 45679999999999987 22 233444444343 559999999999998
Q ss_pred HHHhcCCCCCChHHHHHHHHhhhCCchh--HHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhh-ccCChhHHHHHHHHH
Q 000318 329 SCLLTDPSRADAPQILTALCDRLLDFDE--NVRKQVVAVICDVACHALNSIPVETVKLVAERL-RDKSVLVKRYTMERL 404 (1675)
Q Consensus 329 ~iL~~~p~~~~~~ei~~~L~~rL~D~DE--kVR~aaV~ai~~la~~~l~~Vs~elL~~laeR~-RDKK~~VRkeAm~~L 404 (1675)
.+....| ..+.+.|..-+.|..+ .||.+|+.++-. ..-+..+|..++..+ .|+...|+......|
T Consensus 550 ~~~~~~~-----~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~------~~P~~~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 550 RLAKHCP-----EKVREILLPIFMNTTEDPEVRIAAYLILMR------CNPSPSVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp TGGGT-H-----HHHHHHHHHHHH-TTS-HHHHHHHHHHHHH------T---HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred HHhhcCc-----HHHHHHHHHHhcCCCCChhHHHHHHHHHHh------cCCCHHHHHHHHHHHhhCchHHHHHHHHHhc
Confidence 7644443 2455666666655544 399997666532 113556788888877 778788887665543
No 67
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=90.08 E-value=0.51 Score=55.72 Aligned_cols=48 Identities=23% Similarity=0.331 Sum_probs=39.6
Q ss_pred ccccCceEEEecCCCCceEEEEEEEecCCCCeeEEEcc-CCcceeeecC
Q 000318 1374 EDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYD-DEDVEVLRLD 1421 (1675)
Q Consensus 1374 ~~lvG~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~Yd-DGd~E~l~L~ 1421 (1675)
..=||-+|.-.|-.|..||.++|++.+...+.-.|+|. -|..|.+.|.
T Consensus 68 ~WkvGd~C~A~~s~Dg~~Y~A~I~~i~~~~~~~~V~f~gYgn~e~v~l~ 116 (264)
T PF06003_consen 68 KWKVGDKCMAVYSEDGQYYPATIESIDEEDGTCVVVFTGYGNEEEVNLS 116 (264)
T ss_dssp ---TT-EEEEE-TTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGG
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEcccCCeEeeehh
Confidence 45599999999999999999999999999999999995 5788888885
No 68
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=90.03 E-value=0.19 Score=44.57 Aligned_cols=52 Identities=23% Similarity=0.206 Sum_probs=34.7
Q ss_pred hhHHHHHHHHhHHHHhcCCC--CCChHHHHHHHHhhhCCchhHHHHHHHHHHHH
Q 000318 317 VAVRMSVLEHVKSCLLTDPS--RADAPQILTALCDRLLDFDENVRKQVVAVICD 368 (1675)
Q Consensus 317 ~~VR~~~Ve~~~~iL~~~p~--~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~ 368 (1675)
+.||...+...+.+....+. .....+++..|...|.|+++.||.+|+.+++.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 46777777777763333221 11234777888888888888888888777754
No 69
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=89.53 E-value=15 Score=49.31 Aligned_cols=177 Identities=20% Similarity=0.198 Sum_probs=99.1
Q ss_pred cccHHHHHHHHhhccccchHhHHHHHHHhhcchhhhhh-cccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchH
Q 000318 644 GGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLA-ATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSL 722 (1675)
Q Consensus 644 k~~v~~Li~lL~~~~~~~~~~aLkiLak~~k~~~e~~~-~~~s~l~~~L~~lal~GtpkqAKyAvr~Laa~~~~~~~~~~ 722 (1675)
++.+.-|+++|..++..+.-.++..|.+.+-+ .++-. -....+.+.|.++-..++...-.-|.++|..++.+.+....
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~ 367 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQ 367 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 45567888998877665555566666666532 12211 12346788899999889888889999999988877643210
Q ss_pred ---HHHHHHHHHhhhhcCCCchHHHHHHHHHhhc--ccccccchHHHHHHHHHhhhcccCccCCCCCCCC-------CCc
Q 000318 723 ---SVLYKRLVDMLEEKTHLPAVLQSLGCIAQTA--MPVFETRESEIEEFIKSKILRCSNKIRNDTKACW-------DDR 790 (1675)
Q Consensus 723 ---~~L~~~L~~~L~~~~~l~t~L~sLg~Iaq~a--P~vfe~~~~eI~~fIik~ILl~~~~~~~~~~~~W-------~d~ 790 (1675)
.-++..|+..|.........|..|.+|+... ...|.. ++.+.+|++-++..+....+ .+.-| ...
T Consensus 368 mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~--TdcIp~L~~~Ll~~~~~~v~-~eliaL~iNLa~~~r 444 (708)
T PF05804_consen 368 MVSLGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAY--TDCIPQLMQMLLENSEEEVQ-LELIALLINLALNKR 444 (708)
T ss_pred HHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhh--cchHHHHHHHHHhCCCcccc-HHHHHHHHHHhcCHH
Confidence 1133455555543322223455666666542 344432 24567777766654322111 11111 001
Q ss_pred hhhHHHHHHHHHHHHHhhcCCCccccccchHHHHHHHHHhh
Q 000318 791 SELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSML 831 (1675)
Q Consensus 791 s~~~~aKi~aLK~Lvn~ll~~~~~~~~~~i~~ll~lL~~il 831 (1675)
.....+.--+|+.|+.+.....+ ..+++++++|-
T Consensus 445 naqlm~~g~gL~~L~~ra~~~~D-------~lLlKlIRNiS 478 (708)
T PF05804_consen 445 NAQLMCEGNGLQSLMKRALKTRD-------PLLLKLIRNIS 478 (708)
T ss_pred HHHHHHhcCcHHHHHHHHHhccc-------HHHHHHHHHHH
Confidence 11122234567777777655443 45788998874
No 70
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.44 E-value=13 Score=49.34 Aligned_cols=165 Identities=17% Similarity=0.236 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHhcc-------cccccHHHHHH-HH---HHhcCCCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCC
Q 000318 167 VLSSMQTIMIVLLEE-------SEDIQEDLLVI-LL---SALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGD 235 (1675)
Q Consensus 167 V~~~m~~IL~~vI~E-------se~vp~~vLd~-IL---~~l~~~~~~~a~~lA~~v~~~~~dkL~~~I~qyf~~il~~~ 235 (1675)
+...+..||..++.- ...||...|.+ || ..++++.. .++|.|.--+.|.++..=..
T Consensus 220 l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~------------daSd~M~DiLaqvatntdss- 286 (866)
T KOG1062|consen 220 LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDA------------DASDLMNDILAQVATNTDSS- 286 (866)
T ss_pred HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCc------------cHHHHHHHHHHHHHhccccc-
Confidence 444455566666553 12377777763 22 33455532 33455555555655542111
Q ss_pred CCCCCCcc-hHHHHHHHHHhhcchhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCCC------------------CC
Q 000318 236 SRPGHSHI-DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG------------------SA 296 (1675)
Q Consensus 236 ~~~~~~~~-~~h~Li~eL~~~~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~------------------s~ 296 (1675)
.+.+. -+|+-+..|+.+- .+..+|.+|+..||+-++.++ .+
T Consensus 287 ---kN~GnAILYE~V~TI~~I~-----------------~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~ 346 (866)
T KOG1062|consen 287 ---KNAGNAILYECVRTIMDIR-----------------SNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPT 346 (866)
T ss_pred ---ccchhHHHHHHHHHHHhcc-----------------CCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcH
Confidence 11111 1455555555442 345667777777777776653 24
Q ss_pred chhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhh
Q 000318 297 NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1675)
Q Consensus 297 ~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~ 371 (1675)
.+++|+.+-- ....|.++.||...+|..-.++..+- ...+++.|.+-|.-.|+.+|...+..|+.+|-
T Consensus 347 avqrHr~tIl---eCL~DpD~SIkrralELs~~lvn~~N----v~~mv~eLl~fL~~~d~~~k~~~as~I~~laE 414 (866)
T KOG1062|consen 347 AVQRHRSTIL---ECLKDPDVSIKRRALELSYALVNESN----VRVMVKELLEFLESSDEDFKADIASKIAELAE 414 (866)
T ss_pred HHHHHHHHHH---HHhcCCcHHHHHHHHHHHHHHhcccc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 5788888765 45579999999999999876554432 45677777777777799999998888887664
No 71
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=89.20 E-value=2.7 Score=42.08 Aligned_cols=87 Identities=22% Similarity=0.294 Sum_probs=70.3
Q ss_pred HHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCC-CCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCCCCHH
Q 000318 302 HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDP-SRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE 380 (1675)
Q Consensus 302 ~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p-~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~Vs~e 380 (1675)
..+|+.++.-.+|..++||..-+....+++.++. .......|+..+..-|.|+|.=|=+.||++++.++... |.+
T Consensus 2 ~~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~----p~~ 77 (92)
T PF10363_consen 2 RETLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH----PDE 77 (92)
T ss_pred hHHHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC----hHH
Confidence 3678999999999999999999999999888765 33445678889999999999999999999999988766 334
Q ss_pred HHHHHHHhhccC
Q 000318 381 TVKLVAERLRDK 392 (1675)
Q Consensus 381 lL~~laeR~RDK 392 (1675)
++..|.++-.|+
T Consensus 78 vl~~L~~~y~~~ 89 (92)
T PF10363_consen 78 VLPILLDEYADP 89 (92)
T ss_pred HHHHHHHHHhCc
Confidence 565555555444
No 72
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.16 E-value=31 Score=48.82 Aligned_cols=324 Identities=15% Similarity=0.228 Sum_probs=154.2
Q ss_pred HHHHHhchhhhhcCCCcchhHHHHHHH--HHHhhhcCCCCCCCh--hHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHH
Q 000318 54 PFLNAIVQPVLLKHQDKDVKLLVATCI--CEITRITAPEAPYSD--DVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILET 129 (1675)
Q Consensus 54 ~~~~~Lv~~~LL~HkD~~Vr~~vAcCL--adIlRI~APdAPytd--~qLkdIF~l~v~qf~~L~d~~~p~f~q~~~LLE~ 129 (1675)
.+.+++.+.=|-+=.++.-|+--|||| +|++|= .|+++ +.|.+|+..+|+.-..+.+. --.--.-....
T Consensus 1035 ~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g----~~~~~~~e~lpelw~~~fRvmDDIKEs---VR~aa~~~~~~ 1107 (1702)
T KOG0915|consen 1035 EYLNEILDELLVNLTSKEWRVREASCLALADLLQG----RPFDQVKEKLPELWEAAFRVMDDIKES---VREAADKAARA 1107 (1702)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcC----CChHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 344444443344458899999999996 599985 66665 56777777777655443321 11111223334
Q ss_pred HHhhhhhheeccCC----chHHHHHH--------------------HHHHHHhhcCCChhhHHHHHHHHHHHHhcccccc
Q 000318 130 LAKYRSCVVMLDLE----CDELVNEM--------------------YSTFFAVASDDHPESVLSSMQTIMIVLLEESEDI 185 (1675)
Q Consensus 130 LA~vks~vl~~DL~----~~~Li~~l--------------------F~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~v 185 (1675)
|+. .||-+||.. +.+.+.-+ ..++.+++ ..-++.+..+..++.-.+++-.+.+
T Consensus 1108 lsK--l~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~-Kssg~~lkP~~~~LIp~ll~~~s~l 1184 (1702)
T KOG0915|consen 1108 LSK--LCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLA-KSSGKELKPHFPKLIPLLLNAYSEL 1184 (1702)
T ss_pred HHH--HHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHH-HhchhhhcchhhHHHHHHHHHcccc
Confidence 443 477777753 22222221 12222222 1123344455555555555555556
Q ss_pred cHHHHHHHHHHhc----------------------------------------------------CCCcHHHHHHHHHHH
Q 000318 186 QEDLLVILLSALG----------------------------------------------------RNKNDTARRLAMNVI 213 (1675)
Q Consensus 186 p~~vLd~IL~~l~----------------------------------------------------~~~~~~a~~lA~~v~ 213 (1675)
.+.||..+--.+. -+....+..+-..|.
T Consensus 1185 E~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~ 1264 (1702)
T KOG0915|consen 1185 EPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLV 1264 (1702)
T ss_pred chHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHH
Confidence 6665554432220 000113334444444
Q ss_pred HHhhhhhHHHHHHHHHHhhcCCCCCCCCcchHH-HHHHHHHhh-cchhhhhhhhhhcccccCCchHHHHHHHHHHHHhhc
Q 000318 214 EQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYH-EVIYDVYRC-SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFA 291 (1675)
Q Consensus 214 ~~~~dkL~~~I~qyf~~il~~~~~~~~~~~~~h-~Li~eL~~~-~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs 291 (1675)
.+|..-|.||.-.||.-++.|-..-.....++. .-.--|.++ .|+=-...+-.+-.++..+++..+..+..++.. |+
T Consensus 1265 ~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~-Ia 1343 (1702)
T KOG0915|consen 1265 QRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISN-IA 1343 (1702)
T ss_pred HHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHH-HH
Confidence 445555555555555544443211000111110 111112222 343333333333444445555555666666666 55
Q ss_pred CCCCCchhhcHHHHH--HHHhcccCCChhHHHH----HHHHhHHHHhcCCCC--CChHHHHHHHHhhh-CCchhHHHHHH
Q 000318 292 VPGSANNEQFHSVFS--EFLKRLTDRIVAVRMS----VLEHVKSCLLTDPSR--ADAPQILTALCDRL-LDFDENVRKQV 362 (1675)
Q Consensus 292 ~~~s~~a~~y~~lw~--~fL~R~~D~s~~VR~~----~Ve~~~~iL~~~p~~--~~~~ei~~~L~~rL-~D~DEkVR~aa 362 (1675)
....+....|.+.+- .||.++.+ .-+.=-. |.+.++. .-.+ -...+++..+|+-. .+.-.++|.++
T Consensus 1344 n~s~e~Lkn~asaILPLiFLa~~ee-~Ka~q~Lw~dvW~e~vsg----gagtvrl~~~eiLn~iceni~nn~~w~lr~q~ 1418 (1702)
T KOG0915|consen 1344 NYSQEMLKNYASAILPLIFLAMHEE-EKANQELWNDVWAELVSG----GAGTVRLYLLEILNLICENITNNESWKLRKQA 1418 (1702)
T ss_pred HhhHHHHHhhHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHhCCC----CcchhhhhHHHHHHHHHHHhccchHHHHHHHH
Confidence 443333444444433 45555554 1111111 2222110 0000 01235555666554 45559999999
Q ss_pred HHHHHHhhhhhcCCCCHHH--------HHHHHHhhccCC
Q 000318 363 VAVICDVACHALNSIPVET--------VKLVAERLRDKS 393 (1675)
Q Consensus 363 V~ai~~la~~~l~~Vs~el--------L~~laeR~RDKK 393 (1675)
.+++..++......+|.+. +.++..|+-|=|
T Consensus 1419 Akai~~~a~~~sss~~~p~ilkl~~~ll~~L~GRiwdGK 1457 (1702)
T KOG0915|consen 1419 AKAIRVIAEGLSSSAPIPVILKLALSLLDTLNGRIWDGK 1457 (1702)
T ss_pred HHHHHHHcccccccCChHHHHHHHHHHHHHhhccccccH
Confidence 9999988887777777543 346666665544
No 73
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=88.82 E-value=96 Score=41.22 Aligned_cols=56 Identities=20% Similarity=0.347 Sum_probs=44.8
Q ss_pred cCC-chHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHh
Q 000318 141 DLE-CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSAL 197 (1675)
Q Consensus 141 DL~-~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~vp~~vLd~IL~~l 197 (1675)
+++ -+||+..+|..++..+ .....+|..-.+.|+..+.++--.|+.+|-+.|...+
T Consensus 75 q~d~e~DlV~~~f~hlLRg~-Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l 131 (892)
T KOG2025|consen 75 QLDKEEDLVAGTFYHLLRGT-ESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKL 131 (892)
T ss_pred ccCchhhHHHHHHHHHHhcc-cCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHH
Confidence 444 4679999998887643 4456789999999999999998899999888777554
No 74
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=88.80 E-value=16 Score=47.33 Aligned_cols=129 Identities=19% Similarity=0.173 Sum_probs=86.8
Q ss_pred Hhhcchhhhhhhhhhc----ccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHHHhH
Q 000318 253 YRCSPQILSGVVPYLT----GELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVK 328 (1675)
Q Consensus 253 ~~~~P~lL~~ViPqLe----~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~ 328 (1675)
-.+.|.++...+|.++ ....+++...|..|=++||.+..... .+...--++..-+.....+-.++||..+-++..
T Consensus 361 ~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p-~l~~~d~~li~~LF~sL~~~~~evr~sIqeALs 439 (501)
T PF13001_consen 361 KLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAP-SLFSKDLSLIEFLFDSLEDESPEVRVSIQEALS 439 (501)
T ss_pred HHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCc-ccccccHHHHHHHHHHhhCcchHHHHHHHHHHH
Confidence 3567777778888884 34667899999999999998887644 334444555556666778889999999999988
Q ss_pred HHHhcCCCCCC-----hHHHHH-HHHhhhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHH
Q 000318 329 SCLLTDPSRAD-----APQILT-ALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKL 384 (1675)
Q Consensus 329 ~iL~~~p~~~~-----~~ei~~-~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~Vs~elL~~ 384 (1675)
.++.+-+.... ...... .+.....+..-.+|.+||+-.. +|..+++++...+..
T Consensus 440 sl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an--~~fpf~d~~aR~i~i 499 (501)
T PF13001_consen 440 SLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYAN--ACFPFSDVPARYICI 499 (501)
T ss_pred HHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHHHH--HhCCccchHHHHHHh
Confidence 87765332111 111122 2233345667779999888763 467777777665543
No 75
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=88.78 E-value=0.63 Score=46.45 Aligned_cols=99 Identities=14% Similarity=0.096 Sum_probs=71.3
Q ss_pred HhcccCCChhHHHHHHHHhHHHHhcCCCC---CChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcC----CCCHHH
Q 000318 309 LKRLTDRIVAVRMSVLEHVKSCLLTDPSR---ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN----SIPVET 381 (1675)
Q Consensus 309 L~R~~D~s~~VR~~~Ve~~~~iL~~~p~~---~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~----~Vs~el 381 (1675)
+.-..|.++.+|...+.+...+-...|.. -....+++.|...|.|++.+||..++.+++.++..... .+...+
T Consensus 13 ~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~ 92 (120)
T cd00020 13 VSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGG 92 (120)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCC
Confidence 33334555788888888877755543321 00125678888889999999999999999999764321 122236
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHH
Q 000318 382 VKLVAERLRDKSVLVKRYTMERLADI 407 (1675)
Q Consensus 382 L~~laeR~RDKK~~VRkeAm~~La~L 407 (1675)
+..+.+.+.+....||+.|+..|+.|
T Consensus 93 l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 93 VPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred hHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 77888999999999999999999876
No 76
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.54 E-value=0.81 Score=58.56 Aligned_cols=97 Identities=26% Similarity=0.291 Sum_probs=84.1
Q ss_pred HHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHH
Q 000318 306 SEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLV 385 (1675)
Q Consensus 306 ~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~Vs~elL~~l 385 (1675)
-+|+--+.|-=-+||.+.|.....+-.++|.. +..-++.|.+.++|-.+-||+.++.++.-++.+ -.+..+.|..+
T Consensus 376 GA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F--A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~--l~i~eeql~~i 451 (823)
T KOG2259|consen 376 GALVHGLEDEFYEVRRAAVASLCSLATSSPGF--AVRALDFLVDMFNDEIEVVRLKAIFALTMISVH--LAIREEQLRQI 451 (823)
T ss_pred ceeeeechHHHHHHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH--heecHHHHHHH
Confidence 56777778888899999999999988888976 447889999999999999999999999888877 56788999999
Q ss_pred HHhhccCChhHHHHHHHHHHH
Q 000318 386 AERLRDKSVLVKRYTMERLAD 406 (1675)
Q Consensus 386 aeR~RDKK~~VRkeAm~~La~ 406 (1675)
.+=+.|..+.||...-+.|+.
T Consensus 452 l~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 452 LESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHHHhcCHHHHHHHHHHHHh
Confidence 999999999999987776654
No 77
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=87.59 E-value=0.47 Score=42.04 Aligned_cols=52 Identities=15% Similarity=0.109 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHhhhhhcC---CCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000318 356 ENVRKQVVAVICDVACHALN---SIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1675)
Q Consensus 356 EkVR~aaV~ai~~la~~~l~---~Vs~elL~~laeR~RDKK~~VRkeAm~~La~L 407 (1675)
+.||.+++.+++.++..... ..-.+++..|...++|-...||..|...||+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 47999999999876643322 23346788999999999999999999999875
No 78
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.56 E-value=3.4 Score=53.24 Aligned_cols=111 Identities=16% Similarity=0.133 Sum_probs=82.9
Q ss_pred chhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCC
Q 000318 297 NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS 376 (1675)
Q Consensus 297 ~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~ 376 (1675)
+...-..+|+....=++|.++.||...++..-. | .+ ..-+...+.+-..+-+-|.++-||.+||+.|.-++...+-.
T Consensus 192 ~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~-L-~e-g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~ 268 (823)
T KOG2259|consen 192 LTHDREHAARGLIYLEHDQDFRVRTHAVEGLLA-L-SE-GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAP 268 (823)
T ss_pred ccccHHHHHHHHHHHhcCCCcchHHHHHHHHHh-h-cc-cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCc
Confidence 444456788887777899999999998887533 1 12 22233456677788899999999999999998777655321
Q ss_pred C---------CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000318 377 I---------PVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1675)
Q Consensus 377 V---------s~elL~~laeR~RDKK~~VRkeAm~~La~LY~~ 410 (1675)
. -+..+..+.+=++|..+.||.+|.+.||.+=+.
T Consensus 269 ~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~v 311 (823)
T KOG2259|consen 269 LERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQV 311 (823)
T ss_pred ccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHh
Confidence 1 124677899999999999999999999877664
No 79
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=87.41 E-value=1.1 Score=45.10 Aligned_cols=84 Identities=21% Similarity=0.205 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCC--CChHHHHHHHHhhhCCchh
Q 000318 279 RLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR--ADAPQILTALCDRLLDFDE 356 (1675)
Q Consensus 279 Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~--~~~~ei~~~L~~rL~D~DE 356 (1675)
|..+.-.|+.+--+-+..+....+.+-..-|.-|.|.++.||....++..+|....... .-..+|.++|.+.+.|+|+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~ 82 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDE 82 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 44555555544322233456666788888899999999999999999999987654321 1135899999999999999
Q ss_pred HHHHHH
Q 000318 357 NVRKQV 362 (1675)
Q Consensus 357 kVR~aa 362 (1675)
.||.++
T Consensus 83 ~Vr~~a 88 (97)
T PF12755_consen 83 NVRSAA 88 (97)
T ss_pred hHHHHH
Confidence 999985
No 80
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.19 E-value=1.2e+02 Score=40.45 Aligned_cols=114 Identities=18% Similarity=0.194 Sum_probs=82.5
Q ss_pred hhcchhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhc
Q 000318 254 RCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT 333 (1675)
Q Consensus 254 ~~~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~ 333 (1675)
...-+++.-.+-++.-.|.+.++-.=-.|...|. .|..|+ +++ ++...-+.=.+---|-||...|-..-.+...
T Consensus 101 ~~~tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS-~fvTpd--LAR---DLa~Dv~tLL~sskpYvRKkAIl~lykvFLk 174 (877)
T KOG1059|consen 101 HDDTDVLMLTTNLLRKDLNSSNVYEVGLALSGLS-CIVTPD--LAR---DLADDVFTLLNSSKPYVRKKAILLLYKVFLK 174 (877)
T ss_pred cCCccHHHHHHHHHHHHhccCccchhhheecccc-cccCch--hhH---HHHHHHHHHHhcCchHHHHHHHHHHHHHHHh
Confidence 3344444445556777777777776677777776 444443 554 3444333444557889999999988888887
Q ss_pred CCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcC
Q 000318 334 DPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN 375 (1675)
Q Consensus 334 ~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~ 375 (1675)
-|+. .+.-.+-|.++|-|||..|--|||.+||++|..++.
T Consensus 175 YPeA--lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPk 214 (877)
T KOG1059|consen 175 YPEA--LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQ 214 (877)
T ss_pred hhHh--HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCc
Confidence 7752 356788999999999999999999999999998865
No 81
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=86.96 E-value=0.77 Score=39.25 Aligned_cols=39 Identities=28% Similarity=0.428 Sum_probs=29.5
Q ss_pred hHHHHhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHH
Q 000318 327 VKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAV 365 (1675)
Q Consensus 327 ~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~a 365 (1675)
...++...|.....+.+.+.+..||.|++..||.+||..
T Consensus 3 l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 3 LSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 345556666655566888899999999999999988765
No 82
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=85.22 E-value=5.4 Score=50.18 Aligned_cols=54 Identities=20% Similarity=0.097 Sum_probs=26.1
Q ss_pred HHHhhhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 000318 346 ALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLAD 406 (1675)
Q Consensus 346 ~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~Vs~elL~~laeR~RDKK~~VRkeAm~~La~ 406 (1675)
.|..-|.|.|..||.++|.+++.+-.. +.+..|..-+.|....||..|+.+|+.
T Consensus 151 ~L~~~L~d~d~~Vra~A~raLG~l~~~-------~a~~~L~~al~d~~~~VR~aA~~al~~ 204 (410)
T TIGR02270 151 ALEAALTHEDALVRAAALRALGELPRR-------LSESTLRLYLRDSDPEVRFAALEAGLL 204 (410)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhccc-------cchHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 334444466666666666655543321 111112233556666666666666543
No 83
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=84.98 E-value=12 Score=51.53 Aligned_cols=164 Identities=16% Similarity=0.184 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhcchhhhhhhhhhcccccCCchHHHHHHH
Q 000318 204 TARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAV 283 (1675)
Q Consensus 204 ~a~~lA~~v~~~~~dkL~~~I~qyf~~il~~~~~~~~~~~~~h~Li~eL~~~~P~lL~~ViPqLe~EL~sed~~~Rl~At 283 (1675)
..+..-....+...|.+...|..+|.+++.. ++++ -++.+|..++
T Consensus 264 e~Ll~~r~etqe~~d~i~~mi~~if~sVFVH---------RYRD--------------------------V~~~IRaiCi 308 (1048)
T KOG2011|consen 264 ESLLMLRKETQEQQDEIESMINDIFDSVFVH---------RYRD--------------------------VDPDIRAICI 308 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhheeee---------eccc--------------------------CchHHHHHHH
Confidence 5566667777788888888888888876543 2222 3467899999
Q ss_pred HHHHHhhcCCCCCchhhcHHHHH--HHHhc----ccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhh-----hC
Q 000318 284 GLVGDLFAVPGSANNEQFHSVFS--EFLKR----LTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDR-----LL 352 (1675)
Q Consensus 284 ~llG~mfs~~~s~~a~~y~~lw~--~fL~R----~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~r-----L~ 352 (1675)
+-||-- +..||+.|- .||+= .+|+...||..||+.+..+..+.-...-....+.-+..| ..
T Consensus 309 qeLgiW--------i~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadr 380 (1048)
T KOG2011|consen 309 QELGIW--------IKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADR 380 (1048)
T ss_pred HHHHHH--------HHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhh
Confidence 999964 456777665 45543 589999999999999999887632211223445555555 46
Q ss_pred CchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHH-HHHHHh
Q 000318 353 DFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLAD-IFRGCC 412 (1675)
Q Consensus 353 D~DEkVR~aaV~ai~~la~~~l~~Vs~elL~~laeR~RDKK~~VRkeAm~~La~-LY~~~~ 412 (1675)
|.+.-||....... +.......++.+-+..|...|-|-++.||+.|+..|-. ++..++
T Consensus 381 d~~~~Vrav~L~~~--~~~~~~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~~~~~a 439 (1048)
T KOG2011|consen 381 DRNVSVRAVGLVLC--LLLSSSGLLSDKDILIVYSLIYDSNRRVAVAAGEFLYKKLFERVA 439 (1048)
T ss_pred hcchhHHHHHHHHH--HHHhcccccChhHHHHHHHHHhccCcchHHHHHHHHHHHhhcccc
Confidence 77777776644332 34455667888888899999999999999999988754 444443
No 84
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=84.14 E-value=1.3e+02 Score=39.62 Aligned_cols=143 Identities=17% Similarity=0.116 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHhh-------hhhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhh-cchhhhhhhhhhcccccCCc
Q 000318 204 TARRLAMNVIEQCA-------GKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRC-SPQILSGVVPYLTGELLTDQ 275 (1675)
Q Consensus 204 ~a~~lA~~v~~~~~-------dkL~~~I~qyf~~il~~~~~~~~~~~~~h~Li~eL~~~-~P~lL~~ViPqLe~EL~sed 275 (1675)
+.+.|+...|.... +.+.+++.+.+.+.....+ ..+..-.|..|-.. .|..+....|+++.. ..-.
T Consensus 420 ~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~~~LkaLGN~g~~~~i~~l~~~l~~~-~~~~ 493 (574)
T smart00638 420 AYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGD-----EEEIQLYLKALGNAGHPSSIKVLEPYLEGA-EPLS 493 (574)
T ss_pred HHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCC-----chheeeHHHhhhccCChhHHHHHHHhcCCC-CCCC
Confidence 33456666664432 3455566555555443211 11122233333322 677777777777632 2235
Q ss_pred hHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCch
Q 000318 276 LDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFD 355 (1675)
Q Consensus 276 ~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D~D 355 (1675)
..+|..|+.-|.++--.. -....+-+|.-|+.+- ..++||++.+-.+ +.++|+.. .+-......-.|++
T Consensus 494 ~~iR~~Av~Alr~~a~~~---p~~v~~~l~~i~~n~~--e~~EvRiaA~~~l---m~t~P~~~---~l~~ia~~l~~E~~ 562 (574)
T smart00638 494 TFIRLAAILALRNLAKRD---PRKVQEVLLPIYLNRA--EPPEVRMAAVLVL---METKPSVA---LLQRIAELLNKEPN 562 (574)
T ss_pred HHHHHHHHHHHHHHHHhC---chHHHHHHHHHHcCCC--CChHHHHHHHHHH---HhcCCCHH---HHHHHHHHHhhcCc
Confidence 678999999999775321 1345566778887665 4578999877665 45678643 23333333446888
Q ss_pred hHHHHHHH
Q 000318 356 ENVRKQVV 363 (1675)
Q Consensus 356 EkVR~aaV 363 (1675)
..|+..+.
T Consensus 563 ~QV~sfv~ 570 (574)
T smart00638 563 LQVASFVY 570 (574)
T ss_pred HHHHHHhH
Confidence 88887643
No 85
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=84.00 E-value=8.4 Score=48.33 Aligned_cols=172 Identities=13% Similarity=0.119 Sum_probs=116.4
Q ss_pred HHh-hcchhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHH
Q 000318 252 VYR-CSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSC 330 (1675)
Q Consensus 252 L~~-~~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~i 330 (1675)
+|. +--++|..|+--|-. +++...|.+|.+.|++|+..+...|...---+-..+|.-..|-...|=....+.|-.+
T Consensus 322 vWeq~f~~iL~~l~EvL~d---~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~ 398 (516)
T KOG2956|consen 322 VWEQHFAEILLLLLEVLSD---SEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTT 398 (516)
T ss_pred HHHHHHHHHHHHHHHHHcc---chhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 564 444555555533322 4789999999999999999887666666666778999999999999988889998888
Q ss_pred HhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhh----hhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 000318 331 LLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVA----CHALNSIPVETVKLVAERLRDKSVLVKRYTMERLAD 406 (1675)
Q Consensus 331 L~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la----~~~l~~Vs~elL~~laeR~RDKK~~VRkeAm~~La~ 406 (1675)
|.+|.-. .-+.-++.+++-.|+..=.++++....+. ...|..+=.++.=.+.+=.---...||+.|+=+|-.
T Consensus 399 las~~P~----~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVa 474 (516)
T KOG2956|consen 399 LASHLPL----QCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVA 474 (516)
T ss_pred HHhhCch----hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHH
Confidence 8877421 34556677777789998888887764432 222322222333344444445566899999999999
Q ss_pred HHHHHhhhccCCCcchhccccchHHHhhh
Q 000318 407 IFRGCCLRNFNGSINQNEFEWIPGKILRC 435 (1675)
Q Consensus 407 LY~~~~~~~~~~~~~~~~~~wIP~~IL~~ 435 (1675)
+|+..=- ..-...+...++.-+++
T Consensus 475 mv~~vG~-----~~mePhL~~Lt~sk~~L 498 (516)
T KOG2956|consen 475 MVNRVGM-----EEMEPHLEQLTSSKLNL 498 (516)
T ss_pred HHHHHhH-----HhhhhHhhhccHHHHHH
Confidence 9997410 11223455555555444
No 86
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.94 E-value=22 Score=46.93 Aligned_cols=255 Identities=16% Similarity=0.211 Sum_probs=138.2
Q ss_pred hhcCCCcchhHHHHHHHHHHhhhc---CCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhH-------------HHHH
Q 000318 64 LLKHQDKDVKLLVATCICEITRIT---APEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRR-------------VVIL 127 (1675)
Q Consensus 64 LL~HkD~~Vr~~vAcCLadIlRI~---APdAPytd~qLkdIF~l~v~qf~~L~d~~~p~f~q~-------------~~LL 127 (1675)
=|.|...=||-.+-|||-.|++.+ -|||| .-|..|+.+.. ||+ .-... -|++
T Consensus 142 cleHrhsYVRrNAilaifsIyk~~~~L~pDap------eLi~~fL~~e~----Dps--CkRNAFi~L~~~D~ErAl~Yl~ 209 (948)
T KOG1058|consen 142 CLEHRHSYVRRNAILAIFSIYKNFEHLIPDAP------ELIESFLLTEQ----DPS--CKRNAFLMLFTTDPERALNYLL 209 (948)
T ss_pred HHhCcchhhhhhhheeehhHHhhhhhhcCChH------HHHHHHHHhcc----Cch--hHHHHHHHHHhcCHHHHHHHHH
Confidence 478999999999999999999995 49988 34555555432 221 11222 3444
Q ss_pred HHHHhhhhhheeccCCchHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHhcCCCcHHHHH
Q 000318 128 ETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARR 207 (1675)
Q Consensus 128 E~LA~vks~vl~~DL~~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~vp~~vLd~IL~~l~~~~~~~a~~ 207 (1675)
+.+..|.++.-. -+-+|.++.+ + ++-..|..=-.++.-|+..+-.++..| ++ .
T Consensus 210 ~~idqi~~~~~~----LqlViVE~Ir---k-v~~~~p~~~~~~i~~i~~lL~stssaV-------~f------------E 262 (948)
T KOG1058|consen 210 SNIDQIPSFNDS----LQLVIVELIR---K-VCLANPAEKARYIRCIYNLLSSTSSAV-------IF------------E 262 (948)
T ss_pred hhHhhccCccHH----HHHHHHHHHH---H-HHhcCHHHhhHHHHHHHHHHhcCCchh-------hh------------h
Confidence 444443332110 0123333322 2 333334433333444444333333222 11 1
Q ss_pred HHHHHHH--HhhhhhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhh----cchhhhhhhhhhcccccCCchHHHHH
Q 000318 208 LAMNVIE--QCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRC----SPQILSGVVPYLTGELLTDQLDTRLK 281 (1675)
Q Consensus 208 lA~~v~~--~~~dkL~~~I~qyf~~il~~~~~~~~~~~~~h~Li~eL~~~----~P~lL~~ViPqLe~EL~sed~~~Rl~ 281 (1675)
-|..|+. .....|.++...|+.=++...+ -+..+-..+.|++|... --+++..|++. |.+.|.++|.+
T Consensus 263 aa~tlv~lS~~p~alk~Aa~~~i~l~~kesd--nnvklIvldrl~~l~~~~~~il~~l~mDvLrv----Lss~dldvr~K 336 (948)
T KOG1058|consen 263 AAGTLVTLSNDPTALKAAASTYIDLLVKESD--NNVKLIVLDRLSELKALHEKILQGLIMDVLRV----LSSPDLDVRSK 336 (948)
T ss_pred hcceEEEccCCHHHHHHHHHHHHHHHHhccC--cchhhhhHHHHHHHhhhhHHHHHHHHHHHHHH----cCcccccHHHH
Confidence 1111111 1122334444444422221110 01111123344444432 33445555555 67899999999
Q ss_pred HHHHHHHhhcCCCCCchhhcHHHHH-HHHhc---ccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCchhH
Q 000318 282 AVGLVGDLFAVPGSANNEQFHSVFS-EFLKR---LTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDEN 357 (1675)
Q Consensus 282 At~llG~mfs~~~s~~a~~y~~lw~-~fL~R---~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEk 357 (1675)
+..+.-++.+.... -+ --..++ ++.+- -+|..-.-|...++.+..|-.+-|+. +..++..|.+-+-|+.+.
T Consensus 337 tldi~ldLvssrNv--ed-iv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~--aatvV~~ll~fisD~N~~ 411 (948)
T KOG1058|consen 337 TLDIALDLVSSRNV--ED-IVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEV--AATVVSLLLDFISDSNEA 411 (948)
T ss_pred HHHHHHhhhhhccH--HH-HHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHH--HHHHHHHHHHHhccCCHH
Confidence 99999999987642 11 001111 11111 24556677999999999999988864 678999999999999999
Q ss_pred HHHHHHHHHHH
Q 000318 358 VRKQVVAVICD 368 (1675)
Q Consensus 358 VR~aaV~ai~~ 368 (1675)
--..++.-|.+
T Consensus 412 aas~vl~FvrE 422 (948)
T KOG1058|consen 412 AASDVLMFVRE 422 (948)
T ss_pred HHHHHHHHHHH
Confidence 88777776655
No 87
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=82.89 E-value=45 Score=40.79 Aligned_cols=204 Identities=13% Similarity=0.112 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhccc-ccccHHHHHHHHHHhcCCCcH--HHH-HHHHHHH--------H
Q 000318 147 LVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEES-EDIQEDLLVILLSALGRNKND--TAR-RLAMNVI--------E 214 (1675)
Q Consensus 147 Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Es-e~vp~~vLd~IL~~l~~~~~~--~a~-~lA~~v~--------~ 214 (1675)
+-..+-+.|..++..+..+.....|...|..-+.-. ..+|..+++.+-.-+...+.. -+| .....++ .
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~ 98 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSL 98 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHH
Confidence 444444455555556666666667777766655554 789999999998877655432 222 2222222 2
Q ss_pred HhhhhhHHHHHHHHHHhhcCCCC-CCCCcc-hHHHHHH--------------HHH----hhcchhhhhhhhhhcccccCC
Q 000318 215 QCAGKLEAGIKQFLVSSMSGDSR-PGHSHI-DYHEVIY--------------DVY----RCSPQILSGVVPYLTGELLTD 274 (1675)
Q Consensus 215 ~~~dkL~~~I~qyf~~il~~~~~-~~~~~~-~~h~Li~--------------eL~----~~~P~lL~~ViPqLe~EL~se 274 (1675)
.....+-+.+-+++.++...... .....+ -++-++. ..| .--|.+|.+ |-+...|.++
T Consensus 99 ~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~--~kvyskl~~~ 176 (339)
T PF12074_consen 99 KFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLS--EKVYSKLASE 176 (339)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcC--HHHHhccCCH
Confidence 22333445555556555543211 111111 2222222 011 112443333 4555554333
Q ss_pred chHHHHHHHHHHHHhhcCCCCCchhh-cHHHHHHHHhcccCC--ChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhh
Q 000318 275 QLDTRLKAVGLVGDLFAVPGSANNEQ-FHSVFSEFLKRLTDR--IVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRL 351 (1675)
Q Consensus 275 d~~~Rl~At~llG~mfs~~~s~~a~~-y~~lw~~fL~R~~D~--s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL 351 (1675)
++ =.-+++.+-.++.......... .....++|+-=.... ++.||..+++....++..+|.. ....|+.+|...|
T Consensus 177 ~d--~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~-l~~~li~~l~~~l 253 (339)
T PF12074_consen 177 ED--LCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL-LSKSLISGLWKWL 253 (339)
T ss_pred hH--HHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHH
Confidence 32 2455566666665543222111 234445666666666 7788888888888877777652 3345666666555
Q ss_pred CCch
Q 000318 352 LDFD 355 (1675)
Q Consensus 352 ~D~D 355 (1675)
.+.+
T Consensus 254 ~~~~ 257 (339)
T PF12074_consen 254 SSSE 257 (339)
T ss_pred Hhcc
Confidence 4433
No 88
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=81.82 E-value=42 Score=44.06 Aligned_cols=144 Identities=13% Similarity=0.071 Sum_probs=90.3
Q ss_pred hhcchhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCCCC-------CchhhcHHHHHHHHhcc-cCCChhHHHHHHH
Q 000318 254 RCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGS-------ANNEQFHSVFSEFLKRL-TDRIVAVRMSVLE 325 (1675)
Q Consensus 254 ~~~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s-------~~a~~y~~lw~~fL~R~-~D~s~~VR~~~Ve 325 (1675)
+-.|++|-.+.+.++..-.-.+..+|.-|+-.+|.|.-.--. .....+-......|+.. .+.+...++.+++
T Consensus 389 ~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk 468 (574)
T smart00638 389 YPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLK 468 (574)
T ss_pred cCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHH
Confidence 446777777777777766667888999999999988742111 11233333344444332 3456667888888
Q ss_pred HhHHHHhcCCCCCChHHHHHHHHhhhC---CchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHH
Q 000318 326 HVKSCLLTDPSRADAPQILTALCDRLL---DFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTME 402 (1675)
Q Consensus 326 ~~~~iL~~~p~~~~~~ei~~~L~~rL~---D~DEkVR~aaV~ai~~la~~~l~~Vs~elL~~laeR~RDKK~~VRkeAm~ 402 (1675)
++++ +-+| ..+..|...+. .....||.+||.++..++...+..+-.-++..+.. ++..+.||-.|..
T Consensus 469 aLGN--~g~~------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n--~~e~~EvRiaA~~ 538 (574)
T smart00638 469 ALGN--AGHP------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLN--RAEPPEVRMAAVL 538 (574)
T ss_pred hhhc--cCCh------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcC--CCCChHHHHHHHH
Confidence 8875 2223 34455555444 45678999999999888776655554444444422 2244789988887
Q ss_pred HHHHH
Q 000318 403 RLADI 407 (1675)
Q Consensus 403 ~La~L 407 (1675)
.|.+-
T Consensus 539 ~lm~t 543 (574)
T smart00638 539 VLMET 543 (574)
T ss_pred HHHhc
Confidence 77653
No 89
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=81.75 E-value=2.4e+02 Score=39.44 Aligned_cols=180 Identities=14% Similarity=0.156 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHH-------HHHhhcCCCCCCCCcch--HHHHHHHHHhhcchhhh-hhhhhhcccccC
Q 000318 204 TARRLAMNVIEQCAGKLEAGIKQF-------LVSSMSGDSRPGHSHID--YHEVIYDVYRCSPQILS-GVVPYLTGELLT 273 (1675)
Q Consensus 204 ~a~~lA~~v~~~~~dkL~~~I~qy-------f~~il~~~~~~~~~~~~--~h~Li~eL~~~~P~lL~-~ViPqLe~EL~s 273 (1675)
.+--+|.....+|--.+..+|.+| |+..+..+=.-=+..++ +-.-+.+|....|..+. .|+|.|=....+
T Consensus 514 ~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls 593 (1133)
T KOG1943|consen 514 TIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLS 593 (1133)
T ss_pred hcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcC
Confidence 344567777778877777887776 34433322000001111 22234458889999999 589998888999
Q ss_pred CchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCC
Q 000318 274 DQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLD 353 (1675)
Q Consensus 274 ed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D 353 (1675)
.+...|..++-..|.+++.-. .-+|-+.. ..+=|++|... ++..++++-.+
T Consensus 594 ~~~~~r~g~~la~~ev~~~~~----~l~~~~~~---------l~e~~i~~l~~----------------ii~~~~~~~~~ 644 (1133)
T KOG1943|consen 594 KDASMRHGVFLAAGEVIGALR----KLEPVIKG---------LDENRIAGLLS----------------IIPPICDRYFY 644 (1133)
T ss_pred CChHHhhhhHHHHHHHHHHhh----hhhhhhhh---------hHHHHhhhhhh----------------hccHHHHHHhc
Confidence 999999999999998886521 11111111 22233333322 22233333333
Q ss_pred ch--hHHHHHHHHHHHHhhhhhcCC----CCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhh
Q 000318 354 FD--ENVRKQVVAVICDVACHALNS----IPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCL 413 (1675)
Q Consensus 354 ~D--EkVR~aaV~ai~~la~~~l~~----Vs~elL~~laeR~RDKK~~VRkeAm~~La~LY~~~~~ 413 (1675)
.- +..|.++++.|..+.-..... +.......+++-+++-+ .+|..|...++.++..|+.
T Consensus 645 rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~ 709 (1133)
T KOG1943|consen 645 RGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVK 709 (1133)
T ss_pred cchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHh
Confidence 33 556666666665554433321 22223334555555555 7999999999999998874
No 90
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=81.53 E-value=15 Score=46.39 Aligned_cols=135 Identities=15% Similarity=0.018 Sum_probs=89.0
Q ss_pred hHHHHHHHHHhhcchhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHH
Q 000318 244 DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSV 323 (1675)
Q Consensus 244 ~~h~Li~eL~~~~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~ 323 (1675)
.+| |--|-..-|..+...++.|.. .++..+|..|+..++ +. ..+..+...+....|..+.||..+
T Consensus 42 ~Ah--LdgL~~~G~~a~~~L~~aL~~---d~~~ev~~~aa~al~---~~-------~~~~~~~~L~~~L~d~~~~vr~aa 106 (410)
T TIGR02270 42 LAH--VDGLVLAGKAATELLVSALAE---ADEPGRVACAALALL---AQ-------EDALDLRSVLAVLQAGPEGLCAGI 106 (410)
T ss_pred HHH--HHHHHHhhHhHHHHHHHHHhh---CCChhHHHHHHHHHh---cc-------CChHHHHHHHHHhcCCCHHHHHHH
Confidence 345 555555556655555555532 466777776665553 11 112358888889999888899999
Q ss_pred HHHhHHHHhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHH
Q 000318 324 LEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMER 403 (1675)
Q Consensus 324 Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~Vs~elL~~laeR~RDKK~~VRkeAm~~ 403 (1675)
+++.+.|= -.+....|...|.|.|..||.+++.+... +.. -+.+.+ ..-+.|..+.||..|+..
T Consensus 107 a~ALg~i~--------~~~a~~~L~~~L~~~~p~vR~aal~al~~---r~~--~~~~~L---~~~L~d~d~~Vra~A~ra 170 (410)
T TIGR02270 107 QAALGWLG--------GRQAEPWLEPLLAASEPPGRAIGLAALGA---HRH--DPGPAL---EAALTHEDALVRAAALRA 170 (410)
T ss_pred HHHHhcCC--------chHHHHHHHHHhcCCChHHHHHHHHHHHh---hcc--ChHHHH---HHHhcCCCHHHHHHHHHH
Confidence 99986411 13567788888899999999988755432 221 133433 344569999999999999
Q ss_pred HHHHHH
Q 000318 404 LADIFR 409 (1675)
Q Consensus 404 La~LY~ 409 (1675)
||.+=.
T Consensus 171 LG~l~~ 176 (410)
T TIGR02270 171 LGELPR 176 (410)
T ss_pred HHhhcc
Confidence 987643
No 91
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=81.19 E-value=1.6e+02 Score=36.91 Aligned_cols=321 Identities=13% Similarity=0.091 Sum_probs=177.1
Q ss_pred cCCCcchhHHHHHHHHHHhhhcCCCCCCCh---hHHHHHHHHHHHhccC---CCCC-CCCChhhHHHHHHHHHhhhhhhe
Q 000318 66 KHQDKDVKLLVATCICEITRITAPEAPYSD---DVLKDIFQLIVGTFSG---LKDT-GGPSFGRRVVILETLAKYRSCVV 138 (1675)
Q Consensus 66 ~HkD~~Vr~~vAcCLadIlRI~APdAPytd---~qLkdIF~l~v~qf~~---L~d~-~~p~f~q~~~LLE~LA~vks~vl 138 (1675)
...|++=|.=+-..|+.+||.|-- .|..+ +.+.-+.++|-+-+.. =++| +...+.|..-+|-.+-.--.++-
T Consensus 3 a~~~~~~r~daY~~l~~~l~~~~~-~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~ 81 (372)
T PF12231_consen 3 AGSDRSSRLDAYMTLNNALKAYDN-LPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVS 81 (372)
T ss_pred CcCCcHHHHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHh
Confidence 345555555555669999998842 23222 3344444444443322 1233 34456666666666654444443
Q ss_pred eccCCchHHHHHHHHHHHHhh-cCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHhc--C--CCcH----HHHHHH
Q 000318 139 MLDLECDELVNEMYSTFFAVA-SDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALG--R--NKND----TARRLA 209 (1675)
Q Consensus 139 ~~DL~~~~Li~~lF~~ff~~v-~~~~~~~V~~~m~~IL~~vI~Ese~vp~~vLd~IL~~l~--~--~~~~----~a~~lA 209 (1675)
.++ ++...-+........ .+..++.+...-+.+|..-==....++.+....|+..+. . -.+. .+..+=
T Consensus 82 ~l~---~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~ 158 (372)
T PF12231_consen 82 TLS---DDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIY 158 (372)
T ss_pred hCC---hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHH
Confidence 333 233333444444443 455677776666655554111122345555555554331 1 1111 667788
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhcCC-CCCCCCcchHHHHHHHHHhhc-chh-hhh-hhhhhcccccCCchHHHHHHHHH
Q 000318 210 MNVIEQCAGKLEAGIKQFLVSSMSGD-SRPGHSHIDYHEVIYDVYRCS-PQI-LSG-VVPYLTGELLTDQLDTRLKAVGL 285 (1675)
Q Consensus 210 ~~v~~~~~dkL~~~I~qyf~~il~~~-~~~~~~~~~~h~Li~eL~~~~-P~l-L~~-ViPqLe~EL~sed~~~Rl~At~l 285 (1675)
+.++.++.+.|...+..+|-.++.+- +.......++..+..++-.+. |+- +.. |...+...+..+ .+-..-++.
T Consensus 159 ~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~--~~~~~~~~~ 236 (372)
T PF12231_consen 159 KRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG--KLIQLYCER 236 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc--cHHHHHHHH
Confidence 89999999999999998876554321 001111223556665554443 222 222 333444444433 777888888
Q ss_pred HHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHH
Q 000318 286 VGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAV 365 (1675)
Q Consensus 286 lG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~a 365 (1675)
+.+|+..++. ...=|++|..+..=..+.- +. ......+.+.-.+.++..+|..||.+|..+
T Consensus 237 L~~mi~~~~~--~~~a~~iW~~~i~LL~~~~--------------~~---~w~~~n~wL~v~e~cFn~~d~~~k~~A~~a 297 (372)
T PF12231_consen 237 LKEMIKSKDE--YKLAMQIWSVVILLLGSSR--------------LD---SWEHLNEWLKVPEKCFNSSDPQVKIQAFKA 297 (372)
T ss_pred HHHHHhCcCC--cchHHHHHHHHHHHhCCch--------------hh---ccHhHhHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 9999998532 2344778987765443211 11 112245788888899999999999999888
Q ss_pred HHHhhhhh-cCC-CCHHHHH--------HHHHhhccCCh-hHHHHHHHHHHHHHHHH
Q 000318 366 ICDVACHA-LNS-IPVETVK--------LVAERLRDKSV-LVKRYTMERLADIFRGC 411 (1675)
Q Consensus 366 i~~la~~~-l~~-Vs~elL~--------~laeR~RDKK~-~VRkeAm~~La~LY~~~ 411 (1675)
=.-+.+.. .+. .....++ .+..+.-+|.. .||..+|..++.++-..
T Consensus 298 W~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~~ 354 (372)
T PF12231_consen 298 WRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYYA 354 (372)
T ss_pred HHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchHHHH
Confidence 77666522 111 1223332 33333333333 89999999999876443
No 92
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=80.40 E-value=86 Score=40.91 Aligned_cols=303 Identities=16% Similarity=0.162 Sum_probs=169.2
Q ss_pred HHHHHHhchh--hhhcCCCcchhHHHHHH---HHHHhhhcCCC--------CCC------ChhHHHHHHHHHHH-----h
Q 000318 53 QPFLNAIVQP--VLLKHQDKDVKLLVATC---ICEITRITAPE--------APY------SDDVLKDIFQLIVG-----T 108 (1675)
Q Consensus 53 ~~~~~~Lv~~--~LL~HkD~~Vr~~vAcC---LadIlRI~APd--------APy------td~qLkdIF~l~v~-----q 108 (1675)
+|+...+|+. ++|+|+.++||.-.|-- |+-||.-|.-. .-| ..+.|--|...|.. -
T Consensus 599 kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~ 678 (975)
T COG5181 599 KPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHR 678 (975)
T ss_pred CcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhc
Confidence 3666677776 78999999999876543 33344322211 111 11334444444433 3
Q ss_pred ccCCCCCCCCChhhHHHHHHHH------HhhhhhheeccCCch-HHHHHHHHHHHHhhc--CCChhhHHHHHHHHHHHHh
Q 000318 109 FSGLKDTGGPSFGRRVVILETL------AKYRSCVVMLDLECD-ELVNEMYSTFFAVAS--DDHPESVLSSMQTIMIVLL 179 (1675)
Q Consensus 109 f~~L~d~~~p~f~q~~~LLE~L------A~vks~vl~~DL~~~-~Li~~lF~~ff~~v~--~~~~~~V~~~m~~IL~~vI 179 (1675)
|..+.-|-+.-.+.-.-||.+= ..+...-.+|+...+ -=..+-.+++|.++. ..+.+.+......-+.-|-
T Consensus 679 ~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is 758 (975)
T COG5181 679 FRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCIS 758 (975)
T ss_pred ccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHH
Confidence 4455555555555555555542 234433355665422 124455666776654 2355555544444333222
Q ss_pred cccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhhhhHHHHHHHHHH---hhcCCCCC----CCCcchHHHHHHH-
Q 000318 180 EESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVS---SMSGDSRP----GHSHIDYHEVIYD- 251 (1675)
Q Consensus 180 ~Ese~vp~~vLd~IL~~l~~~~~~~a~~lA~~v~~~~~dkL~~~I~qyf~~---il~~~~~~----~~~~~~~h~Li~e- 251 (1675)
.. -=|++||+++|++|.-+.. -.++|..-+=.+-.-.|.-|+= ++.+=..+ .+..+++.-..+|
T Consensus 759 ~a--iGPqdvL~~LlnnLkvqeR------q~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFey 830 (975)
T COG5181 759 RA--IGPQDVLDILLNNLKVQER------QQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEY 830 (975)
T ss_pred hh--cCHHHHHHHHHhcchHHHH------HhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHH
Confidence 11 2489999999999852211 1112222211111222222331 11110111 1123355444443
Q ss_pred HHhhcchhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCC-CCCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHH
Q 000318 252 VYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP-GSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSC 330 (1675)
Q Consensus 252 L~~~~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~-~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~i 330 (1675)
+.+.+-+.+.++.|.||+-|...|.-.|+.|..++-.+--.. |.--....=.+.+-..--.-|.+|.|=..+.++...+
T Consensus 831 ig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~ 910 (975)
T COG5181 831 IGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESF 910 (975)
T ss_pred HHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHH
Confidence 678888999999999999999999999999999998876553 2211222223333333345678998888777666543
Q ss_pred HhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHH
Q 000318 331 LLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVIC 367 (1675)
Q Consensus 331 L~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~ 367 (1675)
-..-. ..-+.+++..-|.-|--+||.+-+.++-
T Consensus 911 ~~~lg----~g~~m~Yv~qGLFHPs~~VRk~ywtvyn 943 (975)
T COG5181 911 ATVLG----SGAMMKYVQQGLFHPSSTVRKRYWTVYN 943 (975)
T ss_pred HHHhc----cHHHHHHHHHhccCchHHHHHHHHHHHh
Confidence 32211 2358899999999999999998665553
No 93
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=80.18 E-value=15 Score=49.88 Aligned_cols=150 Identities=19% Similarity=0.242 Sum_probs=117.9
Q ss_pred hhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHH-hcccCCChhHHHHHHHHhHHHHhcCCC
Q 000318 258 QILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFL-KRLTDRIVAVRMSVLEHVKSCLLTDPS 336 (1675)
Q Consensus 258 ~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL-~R~~D~s~~VR~~~Ve~~~~iL~~~p~ 336 (1675)
+++..+.|.|+.++.+.+=..|..|++-|...+..+.......|-.+.--|+ .|..|....|=+.-.+++..|-...+.
T Consensus 249 di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~ 328 (815)
T KOG1820|consen 249 DILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRP 328 (815)
T ss_pred hhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcch
Confidence 6788899999999999999999999999999999877445555555555554 577888887777777776665444322
Q ss_pred --CCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCCCCH-HHHHHHHHhhccCChhHHHHHHHHHHHHHHHH
Q 000318 337 --RADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV-ETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1675)
Q Consensus 337 --~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~Vs~-elL~~laeR~RDKK~~VRkeAm~~La~LY~~~ 411 (1675)
+..+..+...|.+|+.|---.||-++++++-.+.. ..+. .+++.+++=+++|++.+|.++...|.+.++.+
T Consensus 329 ~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n----s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~ 402 (815)
T KOG1820|consen 329 LFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILN----STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKL 402 (815)
T ss_pred hhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh----cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhc
Confidence 33455778899999999999999998888755444 3333 35688899999999999999999999998875
No 94
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=79.72 E-value=12 Score=45.29 Aligned_cols=135 Identities=21% Similarity=0.294 Sum_probs=93.7
Q ss_pred HHHHHhh-cchhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCC-----------
Q 000318 249 IYDVYRC-SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRI----------- 316 (1675)
Q Consensus 249 i~eL~~~-~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s----------- 316 (1675)
++.|-.+ .|..+-..++.|+. .++.-+|..|...||.+-.... +...+.-..|..
T Consensus 95 ~~aLg~~~~~~a~~~li~~l~~---d~~~~vR~~aa~aL~~~~~~~a----------~~~l~~~l~~~~~~~a~~~~~~~ 161 (335)
T COG1413 95 ADALGELGDPEAVPPLVELLEN---DENEGVRAAAARALGKLGDERA----------LDPLLEALQDEDSGSAAAALDAA 161 (335)
T ss_pred HHHHHccCChhHHHHHHHHHHc---CCcHhHHHHHHHHHHhcCchhh----------hHHHHHHhccchhhhhhhhccch
Confidence 3344444 25555555555554 6899999999999998876542 222222222222
Q ss_pred -hhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChh
Q 000318 317 -VAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVL 395 (1675)
Q Consensus 317 -~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~Vs~elL~~laeR~RDKK~~ 395 (1675)
-.+|...+..... ..+ ......+...+.|.+..||.++..+++.+.... ..+...+...+.|-.+.
T Consensus 162 ~~~~r~~a~~~l~~----~~~----~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-----~~~~~~l~~~~~~~~~~ 228 (335)
T COG1413 162 LLDVRAAAAEALGE----LGD----PEAIPLLIELLEDEDADVRRAAASALGQLGSEN-----VEAADLLVKALSDESLE 228 (335)
T ss_pred HHHHHHHHHHHHHH----cCC----hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-----hhHHHHHHHHhcCCCHH
Confidence 1567766666543 111 257778899999999999999999998877665 44556778889999999
Q ss_pred HHHHHHHHHHHHHH
Q 000318 396 VKRYTMERLADIFR 409 (1675)
Q Consensus 396 VRkeAm~~La~LY~ 409 (1675)
||..++..|+.+=.
T Consensus 229 vr~~~~~~l~~~~~ 242 (335)
T COG1413 229 VRKAALLALGEIGD 242 (335)
T ss_pred HHHHHHHHhcccCc
Confidence 99999999987544
No 95
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=78.90 E-value=9.2 Score=51.25 Aligned_cols=149 Identities=17% Similarity=0.193 Sum_probs=115.9
Q ss_pred hhhhhhhcccccCCchHHHHHHHHHHHHhhcCC-CCCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCC--
Q 000318 261 SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP-GSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR-- 337 (1675)
Q Consensus 261 ~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~-~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~-- 337 (1675)
..+.|-|.....+..-..|-.=...|...++.- ..-+.-..|.++--.|.-..=.++.||+.-....+..+.-++..
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 346666666666677777777788888888742 22345678889999999999899999999999999988877642
Q ss_pred CChHHHHHHHHhhhCCch---hHHHHHHHHHHHHhhhhh----cCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 000318 338 ADAPQILTALCDRLLDFD---ENVRKQVVAVICDVACHA----LNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFR 409 (1675)
Q Consensus 338 ~~~~ei~~~L~~rL~D~D---EkVR~aaV~ai~~la~~~----l~~Vs~elL~~laeR~RDKK~~VRkeAm~~La~LY~ 409 (1675)
.....+++.+..--.|.| --||..|.+.+..+.... +...-.++++.+.-=+-|||..||++|+.+=..-|-
T Consensus 946 ~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~ 1024 (1030)
T KOG1967|consen 946 EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWYM 1024 (1030)
T ss_pred HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhh
Confidence 334577888888788888 679999999998887633 334466899999999999999999999987655443
No 96
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=77.72 E-value=12 Score=51.71 Aligned_cols=137 Identities=20% Similarity=0.215 Sum_probs=100.0
Q ss_pred CcchHHHHHHHHH-----hhcchhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCC
Q 000318 241 SHIDYHEVIYDVY-----RCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDR 315 (1675)
Q Consensus 241 ~~~~~h~Li~eL~-----~~~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~ 315 (1675)
..+.-.+++..+| +..| +.+-+|-|-.-+.+....+|..|.+.+|.||.. .....+-.+.+.|+-=..|.
T Consensus 792 ~~~~s~~vf~s~~~~m~s~l~~--~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~---~~~e~m~~v~~~~~~ll~~~ 866 (1549)
T KOG0392|consen 792 EFLSSFEVFNSLAPLMHSFLHP--LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKS---ATRETMATVINGFLPLLGDL 866 (1549)
T ss_pred chhhhHHHHHHHHHhhhhhhhh--hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhccch
Confidence 3344455666666 3345 667788888889999999999999999999976 34566777777887777788
Q ss_pred ChhHHHHHHHHhHHHHhcCCCC---CChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhh--------hcCCCCHHHH
Q 000318 316 IVAVRMSVLEHVKSCLLTDPSR---ADAPQILTALCDRLLDFDENVRKQVVAVICDVACH--------ALNSIPVETV 382 (1675)
Q Consensus 316 s~~VR~~~Ve~~~~iL~~~p~~---~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~--------~l~~Vs~elL 382 (1675)
+--+|.+-...+-.+|.....+ .-..-++.-|..|+-|..|.||.+|-+++..+... .+..+|.+++
T Consensus 867 ~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl 944 (1549)
T KOG0392|consen 867 DKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELL 944 (1549)
T ss_pred hhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHH
Confidence 8888887777666666542111 11234778899999999999999999999887642 2445677776
No 97
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=76.17 E-value=1.2e+02 Score=43.49 Aligned_cols=220 Identities=17% Similarity=0.241 Sum_probs=121.7
Q ss_pred HhccCCCCC---CCCChhhHHHHHHHHHhhhhhh-eeccCCchHHHHHH---------HHHHHHhhcCCChhhHHHHHHH
Q 000318 107 GTFSGLKDT---GGPSFGRRVVILETLAKYRSCV-VMLDLECDELVNEM---------YSTFFAVASDDHPESVLSSMQT 173 (1675)
Q Consensus 107 ~qf~~L~d~---~~p~f~q~~~LLE~LA~vks~v-l~~DL~~~~Li~~l---------F~~ff~~v~~~~~~~V~~~m~~ 173 (1675)
.+|++++.| .+..-.++.++|.++-.+-.-- ..+|-.-++||..| .+..+..+..-.|.++...|..
T Consensus 768 G~~p~~~~p~~~g~k~~~k~~~~l~~l~nIL~Gy~~~l~~~~~~li~~Lr~p~Lp~~ew~~~~s~~~~Rlp~~l~~~~~~ 847 (2196)
T KOG0368|consen 768 GSFPRLGSPAIEGNKPHQKFHSLLNRLENILAGYDPKLDETVQELIKVLRDPELPYLEWQEHISALANRLPPNLDKSLES 847 (2196)
T ss_pred ccccccCCccccccchHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHhcCCCcChHHHHHHHHHHhccCChhHHHHHHH
Confidence 567777766 3333445667777765542211 11221135555555 5566666667778889888888
Q ss_pred HHHHHhcccccccHHHHHHHHHH-hc-CCCcH---------HHHHHHHHHHHHhh--------hhhHHHH--HHHHHHhh
Q 000318 174 IMIVLLEESEDIQEDLLVILLSA-LG-RNKND---------TARRLAMNVIEQCA--------GKLEAGI--KQFLVSSM 232 (1675)
Q Consensus 174 IL~~vI~Ese~vp~~vLd~IL~~-l~-~~~~~---------~a~~lA~~v~~~~~--------dkL~~~I--~qyf~~il 232 (1675)
++..-..-....|...|..||.. +. .+.++ |--+|....+..-. +-|+.|+ -+||+.
T Consensus 848 ~~~~~~s~~t~FPakql~~il~~~~~~~~~~~~~~~~~~~~pl~~l~~~y~~g~~~H~~~v~~~Lle~Yl~VEk~F~~-- 925 (2196)
T KOG0368|consen 848 LVAKSASRITQFPAKQLAKILDAHLATLNRAEREVLFVNIQPLLKLVSRYSGGLEAHAKEVVHDLLEEYLEVEKLFNG-- 925 (2196)
T ss_pred HHHHHhhhcccCcHHHHHHHHHHHhhccccccchhhhhhhhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 88887766668899999988853 32 11111 22222222222111 1122222 123321
Q ss_pred cCCCCCCCCcchHHHHHHHHHhhcchhhhhhhhhhcccccCCc-hHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhc
Q 000318 233 SGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQ-LDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKR 311 (1675)
Q Consensus 233 ~~~~~~~~~~~~~h~Li~eL~~~~P~lL~~ViPqLe~EL~sed-~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R 311 (1675)
....+-+.|..|-+-.+..+..|+-++- ++.+ ..--.+.+.+|+.|-. ++ ...++.|..-|.+
T Consensus 926 --------~~~~~e~~i~~lr~~~~~d~~kVv~~i~---SHs~i~~KN~Lv~~ll~~l~~-~s----~~~~~~f~~iL~~ 989 (2196)
T KOG0368|consen 926 --------RDSHYEDVILRLREENKKDLKKVVDIIL---SHSQIKSKNKLVLALLDQLKP-PS----SKVSDEFRDILRK 989 (2196)
T ss_pred --------CcchHHHHHHHHHHhhhhHHHHHHHHHH---cchhhhhhhHHHHHHHHHhcC-CC----CCCCHHHHHHHHH
Confidence 0112234566666555555666655443 2222 2223455666666655 33 4456677778888
Q ss_pred ccCCChhHHHHHHHHhHHHHhcCCCCCChHHHH
Q 000318 312 LTDRIVAVRMSVLEHVKSCLLTDPSRADAPQIL 344 (1675)
Q Consensus 312 ~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~ 344 (1675)
+.+-+...-.++.-.|.+||...|+..+....+
T Consensus 990 l~~L~~~~~~eVal~Ar~iLi~~ps~~~R~n~~ 1022 (2196)
T KOG0368|consen 990 LTELNHTNTSEVALKARQILIQSPSYELRHNQI 1022 (2196)
T ss_pred HHhhccchHHHHHHHHHHHHHhCcchhhhHHHH
Confidence 888888877777778888888877643333333
No 98
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=75.31 E-value=17 Score=43.93 Aligned_cols=128 Identities=21% Similarity=0.186 Sum_probs=72.1
Q ss_pred hhhhhcccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHH
Q 000318 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQ 342 (1675)
Q Consensus 263 ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~e 342 (1675)
++|.|..-|...+..+|..|+..||.+.... ..+ ....+|.. |-+..||..+....+.+-..+. ...
T Consensus 75 av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~------a~~-~li~~l~~--d~~~~vR~~aa~aL~~~~~~~a----~~~ 141 (335)
T COG1413 75 AVPLLRELLSDEDPRVRDAAADALGELGDPE------AVP-PLVELLEN--DENEGVRAAAARALGKLGDERA----LDP 141 (335)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHccCChh------HHH-HHHHHHHc--CCcHhHHHHHHHHHHhcCchhh----hHH
Confidence 4455555566666677777777666554321 111 22223332 7777788777777665322110 122
Q ss_pred HHHHHHhhh--------CCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000318 343 ILTALCDRL--------LDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1675)
Q Consensus 343 i~~~L~~rL--------~D~DEkVR~aaV~ai~~la~~~l~~Vs~elL~~laeR~RDKK~~VRkeAm~~La~LY~~ 410 (1675)
++..+.+.. .++...||.+++.++..+. ....+..+.++++|....||..|...|+.+-..
T Consensus 142 l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~-------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~ 210 (335)
T COG1413 142 LLEALQDEDSGSAAAALDAALLDVRAAAAEALGELG-------DPEAIPLLIELLEDEDADVRRAAASALGQLGSE 210 (335)
T ss_pred HHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcC-------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcc
Confidence 333333222 1233467777666654422 223455667888888889999999999887664
No 99
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.20 E-value=3.1e+02 Score=37.09 Aligned_cols=144 Identities=16% Similarity=0.179 Sum_probs=90.6
Q ss_pred cchhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCC--hhHHHH---HHHHhHHH
Q 000318 256 SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRI--VAVRMS---VLEHVKSC 330 (1675)
Q Consensus 256 ~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s--~~VR~~---~Ve~~~~i 330 (1675)
+|+.-...--+|...|...++..+..|.+.+=.|+.. | ..+|+++.. +-||.=.+ .++... ..+.++
T Consensus 14 ~p~~e~~~~~~ik~~Lek~~~~~KIeamK~ii~~mln-G----e~~p~Llm~-IiRfvlps~~~elKKLly~ywE~vP-- 85 (948)
T KOG1058|consen 14 SPDGEPMSEDEIKEKLEKGDDEVKIEAMKKIIALMLN-G----EDLPSLLMT-IIRFVLPSRNHELKKLLYYYWELVP-- 85 (948)
T ss_pred CCcccccchHHHHHHHhcCChHHHHHHHHHHHHHHHc-C----CCchHHHHH-HhheeeccCchHHHHHHHHHHHHcc--
Confidence 4444444445777788999999999999988777765 3 455665543 23433221 122111 112222
Q ss_pred HhcCCCCCChHH---HHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000318 331 LLTDPSRADAPQ---ILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1675)
Q Consensus 331 L~~~p~~~~~~e---i~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~Vs~elL~~laeR~RDKK~~VRkeAm~~La~L 407 (1675)
.+++++....| +.++++.=|.-|.|=||-.+..-+|.+--.-+ =+.++-++..-+--++.=||+.|+-++..|
T Consensus 86 -Kt~~dgkl~~EMILvcna~RkDLQHPNEyiRG~TLRFLckLkE~EL---lepl~p~IracleHrhsYVRrNAilaifsI 161 (948)
T KOG1058|consen 86 -KTDSDGKLLHEMILVCNAYRKDLQHPNEYIRGSTLRFLCKLKEPEL---LEPLMPSIRACLEHRHSYVRRNAILAIFSI 161 (948)
T ss_pred -ccCCCcccHHHHHHHHHHHhhhccCchHhhcchhhhhhhhcCcHHH---hhhhHHHHHHHHhCcchhhhhhhheeehhH
Confidence 23333322233 34888889999999999999998887643221 112334555555667889999999999999
Q ss_pred HHHH
Q 000318 408 FRGC 411 (1675)
Q Consensus 408 Y~~~ 411 (1675)
|+..
T Consensus 162 yk~~ 165 (948)
T KOG1058|consen 162 YKNF 165 (948)
T ss_pred Hhhh
Confidence 9973
No 100
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=74.30 E-value=40 Score=45.68 Aligned_cols=131 Identities=11% Similarity=0.080 Sum_probs=94.6
Q ss_pred chHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCc
Q 000318 275 QLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDF 354 (1675)
Q Consensus 275 d~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D~ 354 (1675)
-.-+|..++-|+|+|.-+++ .+++.|-+++..=|....| ++||--+|-+..+|-.. +..-..--+..+..+|.||
T Consensus 944 ~~~vra~~vvTlakmcLah~-~LaKr~~P~lvkeLe~~~~--~aiRnNiV~am~D~C~~--YTam~d~YiP~I~~~L~Dp 1018 (1529)
T KOG0413|consen 944 SDKVRAVGVVTLAKMCLAHD-RLAKRLMPMLVKELEYNTA--HAIRNNIVLAMGDICSS--YTAMTDRYIPMIAASLCDP 1018 (1529)
T ss_pred chHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhhhH--HHHhcceeeeehhhHHH--HHHHHHHhhHHHHHHhcCc
Confidence 45689999999999998876 7999888888877776544 67776555444443221 1001123467788999999
Q ss_pred hhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000318 355 DENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1675)
Q Consensus 355 DEkVR~aaV~ai~~la~~~l~~Vs~elL~~laeR~RDKK~~VRkeAm~~La~LY~~ 410 (1675)
++-||.+++.-+..+-.+.+-.-..+++--+.--+-|-+..||..|=-.++.+...
T Consensus 1019 ~~iVRrqt~ilL~rLLq~~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1019 SVIVRRQTIILLARLLQFGIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhh
Confidence 99999999998888777776666677665455667799999988777777666654
No 101
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.95 E-value=3.7e+02 Score=37.40 Aligned_cols=296 Identities=17% Similarity=0.217 Sum_probs=141.5
Q ss_pred hhhHHHHHHHHHHHHhccccccc---HHHHHHHHHHhcCCCcH---HHHHHHHHHHHHhh--------------hhhHHH
Q 000318 164 PESVLSSMQTIMIVLLEESEDIQ---EDLLVILLSALGRNKND---TARRLAMNVIEQCA--------------GKLEAG 223 (1675)
Q Consensus 164 ~~~V~~~m~~IL~~vI~Ese~vp---~~vLd~IL~~l~~~~~~---~a~~lA~~v~~~~~--------------dkL~~~ 223 (1675)
|.-++..+..++..||.. +-| +.+++.|.+.+...... +|-.+-.+|+.++. +-+-|.
T Consensus 102 p~~iRvql~~~l~~Ii~~--D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~ 179 (1010)
T KOG1991|consen 102 PELIRVQLTACLNTIIKA--DYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPD 179 (1010)
T ss_pred chHHHHHHHHHHHHHHhc--CCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH
Confidence 667778888888888876 444 78888887777432211 44333344444432 445666
Q ss_pred HHHHHHHhhcCCCCCCCCcchHHHHHHHHHhh-----------cchhhhhhhhhh--------cccccCCchHHHH----
Q 000318 224 IKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRC-----------SPQILSGVVPYL--------TGELLTDQLDTRL---- 280 (1675)
Q Consensus 224 I~qyf~~il~~~~~~~~~~~~~h~Li~eL~~~-----------~P~lL~~ViPqL--------e~EL~sed~~~Rl---- 280 (1675)
|.++|+.++..++..+ .....+|..++.. +|+.+.+.+..+ =.|..+.|++.|.
T Consensus 180 il~~~~~ll~~~s~~s---~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~w 256 (1010)
T KOG1991|consen 180 ILQIFNGLLSQESYQS---VELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPW 256 (1010)
T ss_pred HHHHHHhhccccchHH---HHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhhcccccc
Confidence 7777777766542211 1233344443332 344444433221 1244555666665
Q ss_pred -----HHHHHHHHhhcCCCCC---------chhhc-----HHHHHHHHhccc---C---CChhHHHHHHHHhHHHHhcC-
Q 000318 281 -----KAVGLVGDLFAVPGSA---------NNEQF-----HSVFSEFLKRLT---D---RIVAVRMSVLEHVKSCLLTD- 334 (1675)
Q Consensus 281 -----~At~llG~mfs~~~s~---------~a~~y-----~~lw~~fL~R~~---D---~s~~VR~~~Ve~~~~iL~~~- 334 (1675)
=|...|-|+|.--|+. |++-| +-+...||+=.. - .++.|=.-.+.+..+++...
T Consensus 257 wK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~ 336 (1010)
T KOG1991|consen 257 WKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQCVSHAS 336 (1010)
T ss_pred hhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhccHHH
Confidence 3788889998754422 12111 222222322111 1 12222222333333322211
Q ss_pred ------CCCCChHHHHH-----HHH-------hhhCCchhHHHHHHHHHHHHhhh-hhcCCCCHHHHHHHHHhhccCChh
Q 000318 335 ------PSRADAPQILT-----ALC-------DRLLDFDENVRKQVVAVICDVAC-HALNSIPVETVKLVAERLRDKSVL 395 (1675)
Q Consensus 335 ------p~~~~~~ei~~-----~L~-------~rL~D~DEkVR~aaV~ai~~la~-~~l~~Vs~elL~~laeR~RDKK~~ 395 (1675)
|+ .+-|+. .+| .-=.||+|=+|.- ... ..+..-....+..+..-++-++..
T Consensus 337 twkll~PH---l~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~-------~Di~ed~~sp~~Aa~~~l~~~~~KR~ke 406 (1010)
T KOG1991|consen 337 TWKLLKPH---LQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKK-------FDIFEDGYSPDTAALDFLTTLVSKRGKE 406 (1010)
T ss_pred HHHHhhhH---HHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhc-------CchhcccCCCcHHHHHHHHHHHHhcchh
Confidence 21 011111 111 0125777778875 111 111112223344444445544455
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCc------chhccccchHHHhhhhccCCCCchhHHHHhhccCcCCCCCH----HHHH
Q 000318 396 VKRYTMERLADIFRGCCLRNFNGSI------NQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSV----KDRV 465 (1675)
Q Consensus 396 VRkeAm~~La~LY~~~~~~~~~~~~------~~~~~~wIP~~IL~~~Y~nd~~~~lVE~vL~e~LlP~~~~~----~~R~ 465 (1675)
+=.-.|..+..++..|-.....+.. +--.++.|-+.|+. +.+=..++|..+..+++|.-.++ ..|+
T Consensus 407 ~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K----~s~~~~~mE~flv~hVfP~f~s~~g~Lrara 482 (1010)
T KOG1991|consen 407 TLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLK----KSPYKSQMEYFLVNHVFPEFQSPYGYLRARA 482 (1010)
T ss_pred hhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHcc----CCchHHHHHHHHHHHhhHhhcCchhHHHHHH
Confidence 5566777777777766433211111 11235666655543 22112478888888889874443 3454
Q ss_pred HHHHHHHhcCCHH
Q 000318 466 RHWVRIFSGFDRI 478 (1675)
Q Consensus 466 ~~ll~l~~~LD~~ 478 (1675)
--.++.|+.+|-+
T Consensus 483 c~vl~~~~~~df~ 495 (1010)
T KOG1991|consen 483 CWVLSQFSSIDFK 495 (1010)
T ss_pred HHHHHHHHhccCC
Confidence 4444566655443
No 102
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=73.84 E-value=10 Score=49.76 Aligned_cols=108 Identities=16% Similarity=0.154 Sum_probs=82.5
Q ss_pred cHHHHH-HHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhh-hhcCCCC
Q 000318 301 FHSVFS-EFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVAC-HALNSIP 378 (1675)
Q Consensus 301 y~~lw~-~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~-~~l~~Vs 378 (1675)
|+.-+. ..++=|.=.+..||+..+++....+-.-+..-...+|...+..-+.|++..+|..+|+++..+|. -.-..+.
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln 406 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLN 406 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhc
Confidence 444444 33455666788999999999988665322212234788999999999999999999999988885 4445688
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHHH
Q 000318 379 VETVKLVAERLRDKSVLVKRYTMERLADIF 408 (1675)
Q Consensus 379 ~elL~~laeR~RDKK~~VRkeAm~~La~LY 408 (1675)
.|+++.++.---|-...+|..+...||++=
T Consensus 407 ~Ellr~~ar~q~d~~~~irtntticlgki~ 436 (690)
T KOG1243|consen 407 GELLRYLARLQPDEHGGIRTNTTICLGKIA 436 (690)
T ss_pred HHHHHHHHhhCccccCcccccceeeecccc
Confidence 999999988777888888888888777763
No 103
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.70 E-value=1e+02 Score=41.69 Aligned_cols=117 Identities=17% Similarity=0.308 Sum_probs=69.6
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhhheeccCC---chHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhccccc-ccHH
Q 000318 113 KDTGGPSFGRRVVILETLAKYRSCVVMLDLE---CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESED-IQED 188 (1675)
Q Consensus 113 ~d~~~p~f~q~~~LLE~LA~vks~vl~~DL~---~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~-vp~~ 188 (1675)
.+|++|-| ++||.|+++-+ +.-.|+-. -..+...||=.|-.+-+.+ =.....+...||+.+++-+.. +|.+
T Consensus 603 KNPs~P~f--nHYLFEsi~~l--i~~t~~~~~~~vs~~e~aL~p~fq~Il~eD-I~EfiPYvfQlla~lve~~~~~ip~~ 677 (960)
T KOG1992|consen 603 KNPSNPQF--NHYLFESIGLL--IRKTCKANPSAVSSLEEALFPVFQTILSED-IQEFIPYVFQLLAVLVEHSSGTIPDS 677 (960)
T ss_pred cCCCCchh--HHHHHHHHHHH--HHHHhccCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCchh
Confidence 46777755 47899998753 33345544 1345666664444433221 235667888999999998876 8887
Q ss_pred HHHHHHHHhcCC---Cc---HHHHHHHHHHHHHhhhhhH-----HHHHHHHHHhhcC
Q 000318 189 LLVILLSALGRN---KN---DTARRLAMNVIEQCAGKLE-----AGIKQFLVSSMSG 234 (1675)
Q Consensus 189 vLd~IL~~l~~~---~~---~~a~~lA~~v~~~~~dkL~-----~~I~qyf~~il~~ 234 (1675)
...++.-.+.++ ++ .+.-+|-..++.+.+.... .+|-.+|.-++..
T Consensus 678 ~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaS 734 (960)
T KOG1992|consen 678 YSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIAS 734 (960)
T ss_pred HHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcC
Confidence 665544444332 22 2556777777776665444 3455666665543
No 104
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=72.61 E-value=35 Score=46.51 Aligned_cols=146 Identities=13% Similarity=0.179 Sum_probs=107.8
Q ss_pred hhhhhcccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHH
Q 000318 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQ 342 (1675)
Q Consensus 263 ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~e 342 (1675)
+.+.+..-+..-|..+=..|.+.|+.|...-+..|-..-...+..+|.|+.|+-+.+|-..+.++-.++.+.+ ...
T Consensus 296 l~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~----l~~ 371 (815)
T KOG1820|consen 296 LGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP----LSK 371 (815)
T ss_pred HHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc----HHH
Confidence 3344445555667777788888888888765544444446788999999999999999999999998887655 346
Q ss_pred HHHHHHhhhCCchhHHHHHHHHHHHHhh-hhhcCCCCH----HHHHHHHHhhccCChhHHHHHHHHHHHHHHHHh
Q 000318 343 ILTALCDRLLDFDENVRKQVVAVICDVA-CHALNSIPV----ETVKLVAERLRDKSVLVKRYTMERLADIFRGCC 412 (1675)
Q Consensus 343 i~~~L~~rL~D~DEkVR~aaV~ai~~la-~~~l~~Vs~----elL~~laeR~RDKK~~VRkeAm~~La~LY~~~~ 412 (1675)
+.+++..-+.+--..+|...-..+...- ......++. .+...++-.+.|+...||..|.+.++.+++.+-
T Consensus 372 ~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 372 MSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence 7888888888999999988444443221 122123333 355688889999999999999999999999763
No 105
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=72.29 E-value=3e+02 Score=35.54 Aligned_cols=166 Identities=11% Similarity=0.162 Sum_probs=98.3
Q ss_pred CCCChhhHHHHHHHHHhhhhhheeccCCchHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHH
Q 000318 116 GGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLS 195 (1675)
Q Consensus 116 ~~p~f~q~~~LLE~LA~vks~vl~~DL~~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~vp~~vLd~IL~ 195 (1675)
+...+.+.+.+|.++-+..+..+ .++.+..|-+..+.+.+....+.....-..++..||. ...||.+-+..++.
T Consensus 147 ~~~~l~~ll~~l~nviKfn~~~l-----~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~-y~~iP~~sl~~~i~ 220 (464)
T PF11864_consen 147 EESNLSDLLQFLVNVIKFNFNYL-----DEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIIT-YGDIPSESLSPCIE 220 (464)
T ss_pred hhhhHHHHHHHHHHHHhcCCCCC-----CHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH-cCcCChHHHHHHHH
Confidence 45567778888887777655533 2345555555555554443344444555677777776 67899999988887
Q ss_pred HhcC-----CCcHHHHHHHHHHHHHh-hhhhHHHHHHHHHHhhcCCCCCCCC---cch-H-HHHHHHHHhh----cchh-
Q 000318 196 ALGR-----NKNDTARRLAMNVIEQC-AGKLEAGIKQFLVSSMSGDSRPGHS---HID-Y-HEVIYDVYRC----SPQI- 259 (1675)
Q Consensus 196 ~l~~-----~~~~~a~~lA~~v~~~~-~dkL~~~I~qyf~~il~~~~~~~~~---~~~-~-h~Li~eL~~~----~P~l- 259 (1675)
-|-. .-.+++++...+||... ...+-..++.++ .+.+..... .++ + +-+=.-+|.. .|.+
T Consensus 221 vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL----~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~ 296 (464)
T PF11864_consen 221 VLCSIVNSVSLCKPSWRTMRNLLKSHLGHSAIRTLCDIL----RSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLP 296 (464)
T ss_pred HHhhHhcccccchhHHHHHHHHHcCccHHHHHHHHHHHH----cccCccccccHHHHhhHHHHHHHHHhccccCCcceec
Confidence 6621 22348889888888532 333334444443 211111111 111 1 1122234555 3333
Q ss_pred --hhhhhhhhcccccCCchHHHHHHHHHHHHhhc
Q 000318 260 --LSGVVPYLTGELLTDQLDTRLKAVGLVGDLFA 291 (1675)
Q Consensus 260 --L~~ViPqLe~EL~sed~~~Rl~At~llG~mfs 291 (1675)
+..|+|.|..=|+..+.-+=...+.++-++|.
T Consensus 297 ~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 297 FSPSSVLPSLLNALKSNSPRVDYEILLLINRLLD 330 (464)
T ss_pred ccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence 33599999999998888777788888888883
No 106
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=71.66 E-value=31 Score=47.79 Aligned_cols=156 Identities=17% Similarity=0.252 Sum_probs=101.6
Q ss_pred cchHHHHHHHHHhh--cchhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHH----hcc-cC
Q 000318 242 HIDYHEVIYDVYRC--SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFL----KRL-TD 314 (1675)
Q Consensus 242 ~~~~h~Li~eL~~~--~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL----~R~-~D 314 (1675)
.+++.+|+..|-++ .-..|-.|+|++-+-+.....++|..|+.||.++++.-. .+....-.+|.++| .++ +|
T Consensus 440 K~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr-~~~~~daniF~eYlfP~L~~l~~d 518 (1431)
T KOG1240|consen 440 KLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVR-DIPPSDANIFPEYLFPHLNHLLND 518 (1431)
T ss_pred HHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhcc-CCCcccchhhHhhhhhhhHhhhcc
Confidence 34578888887765 556788899999999999999999999999999998642 34444444444443 333 45
Q ss_pred -CChhHHHHHHHHhHHHHh------------------cCCC---------CCChHHHH----HHHHhhhCCchhHHHHHH
Q 000318 315 -RIVAVRMSVLEHVKSCLL------------------TDPS---------RADAPQIL----TALCDRLLDFDENVRKQV 362 (1675)
Q Consensus 315 -~s~~VR~~~Ve~~~~iL~------------------~~p~---------~~~~~ei~----~~L~~rL~D~DEkVR~aa 362 (1675)
-...||++...+++.+-. +.|. ..+..++. ..+...|.|++.-||.+.
T Consensus 519 ~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~L 598 (1431)
T KOG1240|consen 519 SSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRAL 598 (1431)
T ss_pred CccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 567789988777665332 1111 01222333 344446788888888888
Q ss_pred HHHHHHhhhhhcCCCCHH-HHHHHHHhhccCChhHHH
Q 000318 363 VAVICDVACHALNSIPVE-TVKLVAERLRDKSVLVKR 398 (1675)
Q Consensus 363 V~ai~~la~~~l~~Vs~e-lL~~laeR~RDKK~~VRk 398 (1675)
++.|+.+..+--..=+.+ +|..|.-=+-||.+..|.
T Consensus 599 le~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~ 635 (1431)
T KOG1240|consen 599 LESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRG 635 (1431)
T ss_pred HHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHH
Confidence 888777765444433333 445666666777666664
No 107
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=71.64 E-value=1e+02 Score=38.47 Aligned_cols=228 Identities=18% Similarity=0.205 Sum_probs=121.5
Q ss_pred hcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhh-cCCCC
Q 000318 300 QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-LNSIP 378 (1675)
Q Consensus 300 ~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~-l~~Vs 378 (1675)
+|-+-|..-|+-..--+-+=|++ .++++.+...-|+. +.+-+++-.+..-|-|-.||.+|++.+-.++.-. +.-|.
T Consensus 22 q~v~~y~~il~~~k~~~k~k~la-sq~ip~~fk~fp~l--a~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~ 98 (460)
T KOG2213|consen 22 QHVDDYEGILKAVKGTSKEKRLA-SQFIPRFFKHFPSL--ADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVN 98 (460)
T ss_pred hhHHHHHHHHHHhhcchHHHHHH-HHHHHHHHhhCchh--hhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhH
Confidence 66666666666655555555554 56777776666763 5578888888999999999999877765544432 11222
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCcchhccccchHHHhhhhccCCCCchhHHHHhhccCcCCC
Q 000318 379 VETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTG 458 (1675)
Q Consensus 379 ~elL~~laeR~RDKK~~VRkeAm~~La~LY~~~~~~~~~~~~~~~~~~wIP~~IL~~~Y~nd~~~~lVE~vL~e~LlP~~ 458 (1675)
+.+.+.|- --.|+.||...-. . +...-...+..|-++|+ |..
T Consensus 99 d~l~qLLn--------------k~sl~~Lf~~~~~-~-D~~irek~l~fi~tKl~----------------------~l~ 140 (460)
T KOG2213|consen 99 DVLVQLLN--------------KASLTGLFGQIEV-G-DEQIREKVLKFIRTKLI----------------------TLK 140 (460)
T ss_pred HHHHHHHH--------------HHHHHHHHhhhhh-h-hHHHHHHHHHHHHHHhh----------------------ccc
Confidence 22222221 2234555554311 0 00000112333333333 322
Q ss_pred CC--HHHH----HHHHHHHHhcCCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhcCC-----CcHHHHHHHHHH
Q 000318 459 FS--VKDR----VRHWVRIFSGFDRIEMKALEKILEQKQRLQ-----QEMQRYLSLRQMHQDG-----DAPEIQKKILFC 522 (1675)
Q Consensus 459 ~~--~~~R----~~~ll~l~~~LD~~~~kal~~il~~k~~l~-----~~~~~~l~l~~~~~~~-----d~~ei~~kL~~~ 522 (1675)
.. .++- +.-.-..+.+.+..++.+|..||..-..++ ..|+++++-.+...+- ..++.-.++-+|
T Consensus 141 ~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k~~~a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisC 220 (460)
T KOG2213|consen 141 GEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQTKAGEARLQELAEEQEGLADLDAFNVSDADYVDRFISC 220 (460)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhhhhccCcccCCChHHHHHHHHH
Confidence 11 1111 112224456677778888888888766665 3455555443322221 224444455555
Q ss_pred HHHHHhhcCCchHHHHHHH---------HHHhhccHHHHHHHHHH--hcCCCCHHHH
Q 000318 523 FRVMSRSFAEPAKAEENFL---------ILDQLKDANVWKILMNL--LDSNTSFDQA 568 (1675)
Q Consensus 523 i~~Ls~~fPDp~Ka~e~L~---------kf~klnD~Ri~kLLk~~--idp~td~~t~ 568 (1675)
...-.-+|.-..+....+. .|+++-+.|=..+|+.+ |++.|+.+.+
T Consensus 221 l~~AvPfFargapSskf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMss~ttaq~a 277 (460)
T KOG2213|consen 221 LLMAVPFFARGAPSSKFVEYLNKHIIPHHFDKLTEERKLDLLKALAEMSSYTTAQAA 277 (460)
T ss_pred HHHhhhhhhcCCchhHHHHHHHhhhcccccccchHHHHHHHHHHHHHhCccchHHHH
Confidence 5554556665555544443 35556688888888888 4455544444
No 108
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=71.40 E-value=4.5 Score=44.40 Aligned_cols=120 Identities=14% Similarity=0.199 Sum_probs=87.0
Q ss_pred HHHHHHHHhhcchhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHH
Q 000318 246 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 325 (1675)
Q Consensus 246 h~Li~eL~~~~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve 325 (1675)
-+++.++++..+..-..++-++-..+-+.....-..=+.+|+.|.... ......|.+..++|+.-+....+.+-+..+.
T Consensus 39 ~~IL~~~fk~h~~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~-p~~vle~~~~l~~~ld~l~~lp~~~a~~ll~ 117 (158)
T PF14676_consen 39 IQILLELFKVHEMIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKA-PLTVLECSSKLKELLDYLSFLPGDVAIGLLR 117 (158)
T ss_dssp HHHHHHHHHH-GGGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH--HHHHS-S-HHHHGGGGGTTTS-HHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHC-hHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 467788888888888888877777777655543344468888887653 2456778888899999999999999999999
Q ss_pred HhHHHHhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHH
Q 000318 326 HVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICD 368 (1675)
Q Consensus 326 ~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~ 368 (1675)
++-.++..+++ ....++--|++-+.--|..+|..||..+++
T Consensus 118 Al~PLi~~s~~--lrd~lilvLRKamf~r~~~~R~~Av~Gfl~ 158 (158)
T PF14676_consen 118 ALLPLIKFSPS--LRDSLILVLRKAMFSRELDARQMAVNGFLQ 158 (158)
T ss_dssp HHHHHHTT-HH--HHHHHHHHHHHHTT-SSHHHHHHHHHHHH-
T ss_pred HHHHHHhcCHH--HHHHHHHHHHHHHccccHHHHHHHHHHhcC
Confidence 99998887764 234678888888999999999999998864
No 109
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=70.44 E-value=1.4e+02 Score=35.53 Aligned_cols=106 Identities=17% Similarity=0.242 Sum_probs=70.1
Q ss_pred hhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCCCC---CchhhcHHHHHHHHhcccCCChhHHHH-HHHHhHHHHhc
Q 000318 258 QILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGS---ANNEQFHSVFSEFLKRLTDRIVAVRMS-VLEHVKSCLLT 333 (1675)
Q Consensus 258 ~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s---~~a~~y~~lw~~fL~R~~D~s~~VR~~-~Ve~~~~iL~~ 333 (1675)
.++.+.+|.|-.-|.+.++.+|..|.++|..|=..|.. -+..+=++-|..++.+-.+.+.-+|+. |++.+...+..
T Consensus 130 ~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~ 209 (254)
T PF04826_consen 130 HMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKK 209 (254)
T ss_pred hhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCc
Confidence 44556677776667788999999999999877666521 123344667777888877777777765 44444444433
Q ss_pred CC------CC---------CChHHHHHHHHhhhCCchhHHHHHHH
Q 000318 334 DP------SR---------ADAPQILTALCDRLLDFDENVRKQVV 363 (1675)
Q Consensus 334 ~p------~~---------~~~~ei~~~L~~rL~D~DEkVR~aaV 363 (1675)
.. .. .+.+.+.+.|......+|+.||.+||
T Consensus 210 ~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~v~ 254 (254)
T PF04826_consen 210 EAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQVI 254 (254)
T ss_pred ccceeccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhhcC
Confidence 21 10 23445667777777889999998864
No 110
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.12 E-value=13 Score=47.73 Aligned_cols=141 Identities=21% Similarity=0.192 Sum_probs=85.5
Q ss_pred hhhhhhcccccCCchHHHHHHHHHHHHhhcCCC--CCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhc-----C
Q 000318 262 GVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG--SANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT-----D 334 (1675)
Q Consensus 262 ~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~--s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~-----~ 334 (1675)
+++|.+-.-|.+.+..+|-.|+-.||.+.++.. .+++-.+ .+....|.=++.... +.++..+...|.| +
T Consensus 152 gavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~-g~l~pLl~~l~~~~~---~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 152 GAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSC-GALDPLLRLLNKSDK---LSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred CchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhh-cchHHHHHHhccccc---hHHHHHHHHHHHHHHcCCC
Confidence 456666777889999999999999999988742 0112121 122223333333222 4444444444433 3
Q ss_pred CC--CCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCCC----CHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 000318 335 PS--RADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI----PVETVKLVAERLRDKSVLVKRYTMERLAD 406 (1675)
Q Consensus 335 p~--~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V----s~elL~~laeR~RDKK~~VRkeAm~~La~ 406 (1675)
|. .+....++++|...|+..|+.|...||-+++-++-...+.+ ...+...|-+.+.-.+..|+.-|+..+|+
T Consensus 228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGN 305 (514)
T KOG0166|consen 228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGN 305 (514)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccc
Confidence 43 34567899999999999999999999998876654333322 11233344555555556666555555554
No 111
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=68.52 E-value=1.6e+02 Score=40.34 Aligned_cols=140 Identities=21% Similarity=0.280 Sum_probs=99.6
Q ss_pred HHHHHHhh---cCC--CCCCCCcchHHHHHHHHHhhcchhh-----hhhhhhhcccccCCchHHHHHHHHHHHHhhcCCC
Q 000318 225 KQFLVSSM---SGD--SRPGHSHIDYHEVIYDVYRCSPQIL-----SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG 294 (1675)
Q Consensus 225 ~qyf~~il---~~~--~~~~~~~~~~h~Li~eL~~~~P~lL-----~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~ 294 (1675)
+.||.++. ... ..++.....+|+.+.-+-...|.-. ...+|.|=+-|.-.|..+|+-+++++-..+-..+
T Consensus 862 QRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~ 941 (1030)
T KOG1967|consen 862 QRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE 941 (1030)
T ss_pred HHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence 45676653 111 2334444457777777777777521 2356677788999999999999999998877655
Q ss_pred CCchhhcHHHHH-HHHhcccCCC---hhHHHHHHHHhHHHHhcCCCC---CChHHHHHHHHhhhCCchhHHHHHHHHH
Q 000318 295 SANNEQFHSVFS-EFLKRLTDRI---VAVRMSVLEHVKSCLLTDPSR---ADAPQILTALCDRLLDFDENVRKQVVAV 365 (1675)
Q Consensus 295 s~~a~~y~~lw~-~fL~R~~D~s---~~VR~~~Ve~~~~iL~~~p~~---~~~~ei~~~L~~rL~D~DEkVR~aaV~a 365 (1675)
.+...|-+|+- .+|.=-.|-+ ..||...+++...+..--|.+ ....+++.+|...|-|+--.||.+||.+
T Consensus 942 -tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 942 -TLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred -ccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 57777766554 6665555555 889999999987655533432 3346899999999999999999998765
No 112
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=68.50 E-value=6.2 Score=33.83 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=28.6
Q ss_pred HHHhhhhhcCCCCH-HHHHHHHHhhccCChhHHHHHHHHH
Q 000318 366 ICDVACHALNSIPV-ETVKLVAERLRDKSVLVKRYTMERL 404 (1675)
Q Consensus 366 i~~la~~~l~~Vs~-elL~~laeR~RDKK~~VRkeAm~~L 404 (1675)
+..+....+..... .++..+..|+.|.++.||+.|+..|
T Consensus 3 l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 3 LSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 44444545444443 5678999999999999999998764
No 113
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=67.79 E-value=7.6 Score=49.84 Aligned_cols=104 Identities=16% Similarity=0.145 Sum_probs=71.3
Q ss_pred HHHHH-HHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCCCCHH
Q 000318 302 HSVFS-EFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE 380 (1675)
Q Consensus 302 ~~lw~-~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~Vs~e 380 (1675)
.+++. .|..|..|+++.||+.|+.+....+.+-|+--.-.-.+.++.=-|.|..+.||+.+++.+--+..+.++. +
T Consensus 273 ~dicdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~---d 349 (740)
T COG5537 273 KDICDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHT---D 349 (740)
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcc---h
Confidence 34554 7999999999999999999998888776641111123455556799999999999999986665544332 1
Q ss_pred HHHHHHHhh---------ccCChhHHHHHHHHHHHHHH
Q 000318 381 TVKLVAERL---------RDKSVLVKRYTMERLADIFR 409 (1675)
Q Consensus 381 lL~~laeR~---------RDKK~~VRkeAm~~La~LY~ 409 (1675)
.++.+.+|- +|=.. ||-.++..|..+--
T Consensus 350 ~ir~f~eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~ 386 (740)
T COG5537 350 AIRRFVERFKDRILEFLRTDSDC-VRICSIKSLCYLRI 386 (740)
T ss_pred HHHHHHHHHHHHHHHHHhhccch-hhHHHHHHHHHHHH
Confidence 334444443 34444 88888888776644
No 114
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=67.11 E-value=2.7e+02 Score=36.68 Aligned_cols=258 Identities=17% Similarity=0.218 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhccc-----ccccHHHHHHHHHHhcCCCcH--HHHHHHHHHHHHhh--
Q 000318 147 LVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEES-----EDIQEDLLVILLSALGRNKND--TARRLAMNVIEQCA-- 217 (1675)
Q Consensus 147 Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Es-----e~vp~~vLd~IL~~l~~~~~~--~a~~lA~~v~~~~~-- 217 (1675)
.+.++|.-+..-++ .|-.++...++.-|..+|--. ..-..+...+++..|...... .--.+..++|.+..
T Consensus 396 ~fd~vl~pLw~g~~-~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~ 474 (975)
T COG5181 396 QFDEVLCPLWEGAS-QHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTD 474 (975)
T ss_pred HHHHHHHHHHHHHH-hcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCC
Confidence 34444444444443 234455555555555555332 245667888888888533211 33344455554332
Q ss_pred --hhhHHHH-HHHHHHh----hcCCCCCCCCcchHHHHHHHHHhhcchhhhhhhhhhcccccCCchHHHHHHHHHHHHhh
Q 000318 218 --GKLEAGI-KQFLVSS----MSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLF 290 (1675)
Q Consensus 218 --dkL~~~I-~qyf~~i----l~~~~~~~~~~~~~h~Li~eL~~~~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mf 290 (1675)
.+|...| +.||.-. ..+| ..+....-+-.++..=.--+|.+.--++-+ ++.+-+..|..++.++.+.|
T Consensus 475 tp~~lr~~v~pefF~~fw~rr~A~d-r~~~k~v~~ttvilAk~~g~~~v~~kil~~----~~De~ep~r~m~a~~vsri~ 549 (975)
T COG5181 475 TPWKLRDQVSPEFFSPFWRRRSAGD-RRSYKQVVLTTVILAKMGGDPRVSRKILEY----YSDEPEPYRKMNAGLVSRIF 549 (975)
T ss_pred CHHHHHHhhcHHhhchHHHhhhccc-ccccceeehhHHHHHHHcCChHHHHHHHhh----ccCCcchhhhhhhHHHHHHH
Confidence 2333333 2344322 1222 122222223344444444567666665544 55578899999999999999
Q ss_pred cCCCCC-c----------------------------------------hhhc-HHHHHHHHhcccCCChhHHHHHHHHhH
Q 000318 291 AVPGSA-N----------------------------------------NEQF-HSVFSEFLKRLTDRIVAVRMSVLEHVK 328 (1675)
Q Consensus 291 s~~~s~-~----------------------------------------a~~y-~~lw~~fL~R~~D~s~~VR~~~Ve~~~ 328 (1675)
+.-|.. | .+-| +.+-..-|++.+-+.|.||+...+.++
T Consensus 550 ~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~ 629 (975)
T COG5181 550 SRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMG 629 (975)
T ss_pred HhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 876421 1 1122 677888999999999999999888876
Q ss_pred HHHh--cCCC-CCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhh-hhcCCCCH---HHHHHHHHhhccCChhHHHHHH
Q 000318 329 SCLL--TDPS-RADAPQILTALCDRLLDFDENVRKQVVAVICDVAC-HALNSIPV---ETVKLVAERLRDKSVLVKRYTM 401 (1675)
Q Consensus 329 ~iL~--~~p~-~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~-~~l~~Vs~---elL~~laeR~RDKK~~VRkeAm 401 (1675)
.+.. .+.. ..+..-+-..|-+-|-.-+..|=-.+++|||.+-. +.|..... .+|-++.--+|.|..+|-.-+|
T Consensus 630 sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti 709 (975)
T COG5181 630 SLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTI 709 (975)
T ss_pred HHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHH
Confidence 6432 2221 11111122344555666777888888889988754 55664422 3566777888999999999999
Q ss_pred HHHHHHHHH
Q 000318 402 ERLADIFRG 410 (1675)
Q Consensus 402 ~~La~LY~~ 410 (1675)
..++.|-..
T Consensus 710 ~lvg~I~~~ 718 (975)
T COG5181 710 ALVGTICMN 718 (975)
T ss_pred HHHHHHHhc
Confidence 988887664
No 115
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=67.09 E-value=10 Score=30.04 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=24.2
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000318 382 VKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1675)
Q Consensus 382 L~~laeR~RDKK~~VRkeAm~~La~LY~~ 410 (1675)
+-.+.+.+.|..+.||..|...|+.+.+.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 45567889999999999999999999863
No 116
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=66.16 E-value=10 Score=35.72 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=27.0
Q ss_pred cCceEEEecCCC---CceEEEEEEEecCCCCeeEEEccC
Q 000318 1377 IGYRIKVWWPMD---KQFYEGTIKSYDPIKKKHVILYDD 1412 (1675)
Q Consensus 1377 vG~rv~V~Wp~D---~~~Y~G~V~~y~~~~~~H~v~YdD 1412 (1675)
.|.+|.|.--.+ .+||.|+|....... +..|.|+|
T Consensus 3 ~G~~VEV~s~e~g~~gaWf~a~V~~~~~~~-~~~V~Y~~ 40 (68)
T PF05641_consen 3 KGDEVEVSSDEDGFRGAWFPATVLKENGDD-KYLVEYDD 40 (68)
T ss_dssp TT-EEEEEE-SBTT--EEEEEEEEEEETT--EEEEEETT
T ss_pred CCCEEEEEEcCCCCCcEEEEEEEEEeCCCc-EEEEEECC
Confidence 588999987664 699999999999876 99999964
No 117
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.79 E-value=68 Score=42.59 Aligned_cols=164 Identities=13% Similarity=0.131 Sum_probs=111.3
Q ss_pred hHHHHHHHHHhhcchhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHH---------------H
Q 000318 244 DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSE---------------F 308 (1675)
Q Consensus 244 ~~h~Li~eL~~~~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~---------------f 308 (1675)
++-.++|.++---|+-|-..+|-|-+.|..+|+.+-..||..+.++-....-++-.--|..|.- .
T Consensus 163 kAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKL 242 (877)
T KOG1059|consen 163 KAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKL 242 (877)
T ss_pred HHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHH
Confidence 5667888888888999999999999999999999999999999888765443443333333321 1
Q ss_pred HhcccCCChhHHHHHHHHhHHHHh-----------------c-----CCCCC-ChHHHHHHHHhhhCCchhHHHHHHHHH
Q 000318 309 LKRLTDRIVAVRMSVLEHVKSCLL-----------------T-----DPSRA-DAPQILTALCDRLLDFDENVRKQVVAV 365 (1675)
Q Consensus 309 L~R~~D~s~~VR~~~Ve~~~~iL~-----------------~-----~p~~~-~~~ei~~~L~~rL~D~DEkVR~aaV~a 365 (1675)
.+...=..|..+...++-.-.++. - +|... -++-.+..|+..+-|+|.+.+.-.+-+
T Consensus 243 F~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLla 322 (877)
T KOG1059|consen 243 FAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLA 322 (877)
T ss_pred HhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHH
Confidence 233444555555554443333221 1 22221 123345777888999999999999999
Q ss_pred HHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHH
Q 000318 366 ICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIF 408 (1675)
Q Consensus 366 i~~la~~~l~~Vs~elL~~laeR~RDKK~~VRkeAm~~La~LY 408 (1675)
++.++..++..|... ...+..-+-||..+||-.|+..|--+-
T Consensus 323 m~KI~ktHp~~Vqa~-kdlIlrcL~DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 323 MSKILKTHPKAVQAH-KDLILRCLDDKDESIRLRALDLLYGMV 364 (877)
T ss_pred HHHHhhhCHHHHHHh-HHHHHHHhccCCchhHHHHHHHHHHHh
Confidence 999999998887553 122345567899999999988764433
No 118
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=65.47 E-value=40 Score=46.20 Aligned_cols=92 Identities=23% Similarity=0.409 Sum_probs=73.7
Q ss_pred HHHHHHHHHhhcchhhhhhhhhhcccccC-------CchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCCh
Q 000318 245 YHEVIYDVYRCSPQILSGVVPYLTGELLT-------DQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIV 317 (1675)
Q Consensus 245 ~h~Li~eL~~~~P~lL~~ViPqLe~EL~s-------ed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~ 317 (1675)
+-.++..|+.|-|++-..++-+|..+... -+...++..|+.+|.|....-......+ .....+|.-|.=.+.
T Consensus 481 YsRlVAtl~~~M~dvat~lv~~L~~eFr~~~hkK~q~~ietk~~~VrfIsEL~KF~lv~~~~if-~cLk~ll~dF~~hnI 559 (1128)
T KOG2051|consen 481 YSRLVATLSKCMPDVATELVTMLRKEFRSHLHKKAQINIETKLKIVRFISELCKFQLVPKFEIF-SCLKMLLNDFTHHNI 559 (1128)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHhhhhhCccChHHHH-HHHHHHHHhcccccH
Confidence 45789999999999999999999888753 3678899999999999876422222222 356678888988999
Q ss_pred hHHHHHHHHhHHHHhcCCCC
Q 000318 318 AVRMSVLEHVKSCLLTDPSR 337 (1675)
Q Consensus 318 ~VR~~~Ve~~~~iL~~~p~~ 337 (1675)
++=+.+++.|+.+|.++|..
T Consensus 560 Em~c~lLE~~GrfLlr~pEt 579 (1128)
T KOG2051|consen 560 EMACVLLESCGRFLLRSPET 579 (1128)
T ss_pred HHHHHHHHhcchhhhcChhH
Confidence 99999999999999999963
No 119
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=64.44 E-value=21 Score=35.78 Aligned_cols=83 Identities=18% Similarity=0.219 Sum_probs=71.4
Q ss_pred cccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHH
Q 000318 268 TGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTAL 347 (1675)
Q Consensus 268 e~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L 347 (1675)
-.+|..+.+++|-.+..+|.+++..+. .....-+.+...|+.=..|-++=|=+.+|+....+...+|. ++++.|
T Consensus 9 l~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~-----~vl~~L 82 (92)
T PF10363_consen 9 LSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD-----EVLPIL 82 (92)
T ss_pred HHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH-----HHHHHH
Confidence 345677889999999999999999876 34556789999999999999999999999999888877774 688999
Q ss_pred HhhhCCchh
Q 000318 348 CDRLLDFDE 356 (1675)
Q Consensus 348 ~~rL~D~DE 356 (1675)
.+...|.++
T Consensus 83 ~~~y~~~~~ 91 (92)
T PF10363_consen 83 LDEYADPSE 91 (92)
T ss_pred HHHHhCccc
Confidence 998888765
No 120
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=64.30 E-value=4.8e+02 Score=37.23 Aligned_cols=131 Identities=16% Similarity=0.124 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHHHh---hcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhC
Q 000318 276 LDTRLKAVGLVGDL---FAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLL 352 (1675)
Q Consensus 276 ~~~Rl~At~llG~m---fs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~ 352 (1675)
.-+|..-++-++.+ |+..++| .-+..-.+.=.||++...|.++.+.+..+-.-=.-+...+=|+..|..-|.
T Consensus 592 ~~Vkr~Lle~i~~LC~FFGk~ksN-----D~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~lt 666 (1431)
T KOG1240|consen 592 PIVKRALLESIIPLCVFFGKEKSN-----DVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLT 666 (1431)
T ss_pred hHHHHHHHHHHHHHHHHhhhcccc-----cchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhcc
Confidence 46777666666655 4543322 223333333358999999999999987532211112223457899999999
Q ss_pred CchhHHHHHHHHHHHHhhhhhc-CCC-CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHH
Q 000318 353 DFDENVRKQVVAVICDVACHAL-NSI-PVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1675)
Q Consensus 353 D~DEkVR~aaV~ai~~la~~~l-~~V-s~elL~~laeR~RDKK~~VRkeAm~~La~LY~~~ 411 (1675)
|.+|-|=..|..++.-+....+ ..- =.++++.++--+.--+.=||+.++.-++.+|+..
T Consensus 667 D~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 667 DGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred CcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence 9999998887777766655332 221 1267788888888888899999999999888864
No 121
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=63.75 E-value=67 Score=40.10 Aligned_cols=183 Identities=16% Similarity=0.263 Sum_probs=93.7
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCChhhHHHH-HH----HHHhhhhhh--------eeccCCchHHHHHHHHHHHHhhc--
Q 000318 96 DVLKDIFQLIVGTFSGLKDTGGPSFGRRVVI-LE----TLAKYRSCV--------VMLDLECDELVNEMYSTFFAVAS-- 160 (1675)
Q Consensus 96 ~qLkdIF~l~v~qf~~L~d~~~p~f~q~~~L-LE----~LA~vks~v--------l~~DL~~~~Li~~lF~~ff~~v~-- 160 (1675)
.-++++|.+|+.-+..+.-..++|-.|..-= +. .+.-..... +.++-+ -..++.+.++++++
T Consensus 139 ~ai~k~lpl~lqGl~~~~~~~dayL~~~l~~ii~~y~~~Fl~~~~~~~~~~l~~~~~~~~~---~~~~l~~~il~~i~~~ 215 (373)
T PF14911_consen 139 QAIRKSLPLFLQGLGRLSQRQDAYLNQQLRNIIQQYLPRFLPASPSKLVARLSTLLSAFTP---RNEELRKFILQVIRSN 215 (373)
T ss_pred HHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHhHhccCCCccccccccccccchhh---hhhHHHHHHHHHHHHH
Confidence 3489999999998888887788887665321 11 111111111 112222 12233333333332
Q ss_pred -----CCChhhHHHHHHHHHHHHhcc----cccccHHHHHHHH----HHhcC-C----CcHHHHHHHHHHHHHhh-----
Q 000318 161 -----DDHPESVLSSMQTIMIVLLEE----SEDIQEDLLVILL----SALGR-N----KNDTARRLAMNVIEQCA----- 217 (1675)
Q Consensus 161 -----~~~~~~V~~~m~~IL~~vI~E----se~vp~~vLd~IL----~~l~~-~----~~~~a~~lA~~v~~~~~----- 217 (1675)
+.-|+.=...++.++.+++.+ ....-..+++.++ ..+.- + -+.-|-.+-..+++.|.
T Consensus 216 fl~~~~~~p~p~l~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~~~~~ 295 (373)
T PF14911_consen 216 FLEFKGSAPPPRLASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQVGSSG 295 (373)
T ss_pred HhcCCCCCCCCcHHHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHcccccCcc
Confidence 222222223334444444544 2222222233222 22211 1 11133444444445554
Q ss_pred ---hhhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhcchhhhhhhhhhcccccC--------CchHHHHHHHHHH
Q 000318 218 ---GKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLT--------DQLDTRLKAVGLV 286 (1675)
Q Consensus 218 ---dkL~~~I~qyf~~il~~~~~~~~~~~~~h~Li~eL~~~~P~lL~~ViPqLe~EL~s--------ed~~~Rl~At~ll 286 (1675)
+.|+..+++|..+-+. -....++.++..|...+|+++.+.||+|+.+|.. .|...|..=-+++
T Consensus 296 ~~~~~l~s~lrsfvqk~l~------~~t~~~f~~l~~vA~l~p~lV~~Lip~i~q~l~~~E~kRG~G~d~~lR~~~~rL~ 369 (373)
T PF14911_consen 296 EPREQLTSVLRSFVQKYLA------HYTYQYFQFLEKVAELDPQLVISLIPTIRQSLKDSERKRGLGRDVALRKALSRLL 369 (373)
T ss_pred hHHHHHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHH
Confidence 3455555555433211 1123689999999999999999999999998864 3566666555555
Q ss_pred H
Q 000318 287 G 287 (1675)
Q Consensus 287 G 287 (1675)
+
T Consensus 370 ~ 370 (373)
T PF14911_consen 370 S 370 (373)
T ss_pred H
Confidence 4
No 122
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=63.02 E-value=75 Score=42.00 Aligned_cols=219 Identities=16% Similarity=0.156 Sum_probs=114.3
Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhhhhHHH-HHHHHH
Q 000318 151 MYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAG-IKQFLV 229 (1675)
Q Consensus 151 lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~vp~~vLd~IL~~l~~~~~~~a~~lA~~v~~~~~dkL~~~-I~qyf~ 229 (1675)
.|-.+..++|.-..+.+. .+...+.... -......+++..+....+.+|..+..++|.. .++... ..++|.
T Consensus 348 ~f~~Lv~~lr~l~~~~L~----~l~~~~~~~~--~~~~~r~~~lDal~~aGT~~av~~i~~~I~~--~~~~~~ea~~~l~ 419 (618)
T PF01347_consen 348 KFSRLVRLLRTLSYEDLE----ELYKQLKSKS--KKEQARKIFLDALPQAGTNPAVKFIKDLIKS--KKLTDDEAAQLLA 419 (618)
T ss_dssp HHHHHHHHHTTS-HHHHH----HHHHHHTTS-----HHHHHHHHHHHHHH-SHHHHHHHHHHHHT--T-S-HHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHH----HHHHHHHhhc--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc--CCCCHHHHHHHHH
Confidence 366666666543333322 2333332221 2233444555555444456777777777766 333322 223333
Q ss_pred HhhcCCCCCCCCcchHHHHHHHHHhhcchhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcC----C---------CCC
Q 000318 230 SSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAV----P---------GSA 296 (1675)
Q Consensus 230 ~il~~~~~~~~~~~~~h~Li~eL~~~~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~----~---------~s~ 296 (1675)
.+... +-+-.+++|..+.+.++......+..+|..|.-.+|.|.-. . ...
T Consensus 420 ~l~~~-----------------~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~ 482 (618)
T PF01347_consen 420 SLPFH-----------------VRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRC 482 (618)
T ss_dssp HHHHT----------------------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS
T ss_pred HHHhh-----------------cCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchh
Confidence 32111 11223444555555555444446677888888888877632 1 223
Q ss_pred chhhcHHHHHHHHhc-ccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCc---hhHHHHHHHHHHHHhhhh
Q 000318 297 NNEQFHSVFSEFLKR-LTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDF---DENVRKQVVAVICDVACH 372 (1675)
Q Consensus 297 ~a~~y~~lw~~fL~R-~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D~---DEkVR~aaV~ai~~la~~ 372 (1675)
....|-.-+...|+. ....+..-++.++++++++ -+| .+++.|...+.+. ...||.+||.++..++..
T Consensus 483 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~--g~~------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~ 554 (618)
T PF01347_consen 483 IIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL--GHP------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH 554 (618)
T ss_dssp --GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--T-G------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT
T ss_pred hHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc--CCc------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc
Confidence 455665555555553 3445778999999999874 233 4666777766666 899999988887655433
Q ss_pred hcCCCCHHHHHHHHHhhccCC--hhHHHHHHHHHHH
Q 000318 373 ALNSIPVETVKLVAERLRDKS--VLVKRYTMERLAD 406 (1675)
Q Consensus 373 ~l~~Vs~elL~~laeR~RDKK--~~VRkeAm~~La~ 406 (1675)
. |..+...+..-..|.. +.||-.|...|.+
T Consensus 555 ~----~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 555 C----PEKVREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp -----HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred C----cHHHHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 3 3344444445445443 6799888777765
No 123
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=62.65 E-value=1.7e+02 Score=35.69 Aligned_cols=67 Identities=21% Similarity=0.255 Sum_probs=40.0
Q ss_pred HHHHHHHhhccccchHhHHHHHHHhh--cchhhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhc
Q 000318 648 EELVNLLKEENEIIKEGILHVLAKAG--GTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAIT 714 (1675)
Q Consensus 648 ~~Li~lL~~~~~~~~~~aLkiLak~~--k~~~e~~~~~~s~l~~~L~~lal~GtpkqAKyAvr~Laa~~ 714 (1675)
.+.++.|.+......+.+|..|.++- +++.+.+......+...+.+....|++++.-.|.++++.+.
T Consensus 46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ 114 (309)
T PF05004_consen 46 KEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLA 114 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 34455555555455667777775442 22333332222345666777777899888889988865543
No 124
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=62.37 E-value=56 Score=36.08 Aligned_cols=138 Identities=15% Similarity=0.172 Sum_probs=86.8
Q ss_pred ChhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhC-CcCccccH----HHHHHHHhhccc-cchHhHHHHHHHhhcc
Q 000318 602 NKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFS-PLLLGGTE----EELVNLLKEENE-IIKEGILHVLAKAGGT 675 (1675)
Q Consensus 602 Nks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~-P~lFk~~v----~~Li~lL~~~~~-~~~~~aLkiLak~~k~ 675 (1675)
+++.+..+..++..--.+.+....-.+..|+..+...+ |++|..+. ..|..+|+..++ .+.+.++.+|+.+-..
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 67777777777654333333223345678999999998 99996663 667777776443 3556677777665432
Q ss_pred hhhhhhcccchHHHHHHHHhhc-CChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhhcCCCchHHHHHHHHHhhcc
Q 000318 676 IREQLAATSSSVDLLLERLCLE-GSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAM 754 (1675)
Q Consensus 676 ~~e~~~~~~s~l~~~L~~lal~-GtpkqAKyAvr~Laa~~~~~~~~~~~~L~~~L~~~L~~~~~l~t~L~sLg~Iaq~aP 754 (1675)
++.. +. +..+ +||...++...+|..+.+ ..-....|.+|+.+-+..|
T Consensus 99 ~~~~-p~-----------l~Rei~tp~l~~~i~~ll~l~~~--------------------~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 99 IRGK-PT-----------LTREIATPNLPKFIQSLLQLLQD--------------------SSCPETALDALATLLPHHP 146 (165)
T ss_pred hcCC-Cc-----------hHHHHhhccHHHHHHHHHHHHhc--------------------cccHHHHHHHHHHHHHHCC
Confidence 2221 21 1111 356666665555543221 1123467888999999999
Q ss_pred cccccchHHHHHHHHHh
Q 000318 755 PVFETRESEIEEFIKSK 771 (1675)
Q Consensus 755 ~vfe~~~~eI~~fIik~ 771 (1675)
..|-.+...|..+++.-
T Consensus 147 tt~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 147 TTFRPFANKIESALLSL 163 (165)
T ss_pred ccccchHHHHHHHHHHH
Confidence 99999999998887743
No 125
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=61.64 E-value=80 Score=40.36 Aligned_cols=191 Identities=14% Similarity=0.220 Sum_probs=96.5
Q ss_pred HHHHHHHHHHhhhcCCC-CCCChh---HHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhheeccCCch---H
Q 000318 74 LLVATCICEITRITAPE-APYSDD---VLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECD---E 146 (1675)
Q Consensus 74 ~~vAcCLadIlRI~APd-APytd~---qLkdIF~l~v~qf~~L~d~~~p~f~q~~~LLE~LA~vks~vl~~DL~~~---~ 146 (1675)
-|+.=|+.-|+=++.-+ .||.+. +|..|+..+. .+|++|.|. +|+.|+++..=- .+|+-+.+ .
T Consensus 44 eylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~------kNPsnP~Fn--HylFEsi~~lir--~~~~~~~~~v~~ 113 (435)
T PF03378_consen 44 EYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVS------KNPSNPRFN--HYLFESIGALIR--FVCEADPEAVSQ 113 (435)
T ss_dssp HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHH------TS---HHHH--HHHHHHHHHHHH--HS-GGGHH---H
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH------hCCCCcchh--hhHHHHHHHHHH--hccCCChhHHHH
Confidence 36777876666655444 677553 2333333332 357888775 678899986411 23432222 4
Q ss_pred HHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccc--cccH---HHHHHHHHHhcCCCcH---HHHHHHHHHHHHhhh
Q 000318 147 LVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESE--DIQE---DLLVILLSALGRNKND---TARRLAMNVIEQCAG 218 (1675)
Q Consensus 147 Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese--~vp~---~vLd~IL~~l~~~~~~---~a~~lA~~v~~~~~d 218 (1675)
+-..||-.|..+...+ -.....+...||+.+++-.. .+|+ .++..||+...-...+ +.-+|-...|.+++.
T Consensus 114 ~E~~L~P~f~~ILq~d-V~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~ 192 (435)
T PF03378_consen 114 FEEALFPPFQEILQQD-VQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPS 192 (435)
T ss_dssp HHHHHHHHHHHHHHTT--TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCch
Confidence 4555555555554432 22455666778888888766 5665 3333444322111111 445688888888876
Q ss_pred hhH--HH---HHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhcch-hhhhhhhhhcccccCCchHHHHHHHHHHHHhhcC
Q 000318 219 KLE--AG---IKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQ-ILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAV 292 (1675)
Q Consensus 219 kL~--~~---I~qyf~~il~~~~~~~~~~~~~h~Li~eL~~~~P~-lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~ 292 (1675)
.+. .+ |-.-|.-++.++. .+...++|+..|...+|. .|...+|+ ..+-++.|+=+.
T Consensus 193 ~i~~~~~l~~iLgvFQkLi~sk~----~D~~gF~LL~~iv~~~p~~~l~~yl~~--------------I~~lll~RLq~s 254 (435)
T PF03378_consen 193 FIVANNQLEPILGVFQKLIASKA----NDHYGFDLLESIVENLPPEALEPYLKQ--------------IFTLLLTRLQSS 254 (435)
T ss_dssp G----S-CHHHHHHHHHHHT-TT----CHHHHHHHHHHHHHHS-HHHHGGGHHH--------------HHHHHHHHHHHC
T ss_pred hhcchhhHHHHHHHHHHHHCCCC----cchHHHHHHHHHHHHCCHHHHHHHHHH--------------HHHHHHHHHhhC
Confidence 652 11 2223344554431 223456788887777776 45555543 455566666554
Q ss_pred C
Q 000318 293 P 293 (1675)
Q Consensus 293 ~ 293 (1675)
+
T Consensus 255 k 255 (435)
T PF03378_consen 255 K 255 (435)
T ss_dssp -
T ss_pred C
Confidence 3
No 126
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=60.68 E-value=1.5e+02 Score=36.19 Aligned_cols=150 Identities=17% Similarity=0.188 Sum_probs=92.0
Q ss_pred hhhhhcccccCCchHHHHHHHHHHHHhhcC--CCCCchhhcHHHHHHHHhcccCCC--hhHHHHHHHHhHHHHhcC-CCC
Q 000318 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAV--PGSANNEQFHSVFSEFLKRLTDRI--VAVRMSVLEHVKSCLLTD-PSR 337 (1675)
Q Consensus 263 ViPqLe~EL~sed~~~Rl~At~llG~mfs~--~~s~~a~~y~~lw~~fL~R~~D~s--~~VR~~~Ve~~~~iL~~~-p~~ 337 (1675)
++.+++.-|+......+.+|.+++|-+.-. +|..-..-|..+...+..-..|.+ +.+|..|+.+..-+..-. .+.
T Consensus 87 L~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~ 166 (309)
T PF05004_consen 87 LLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDE 166 (309)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCCh
Confidence 344555556666667889999999977544 345555566666665555556654 578999988776543321 122
Q ss_pred CChHHHHHHHHh---h-hC--Cc---------hhHHHHHHHHHHHHhhhhhc----CCCCHHHHHHHHHhhccCChhHHH
Q 000318 338 ADAPQILTALCD---R-LL--DF---------DENVRKQVVAVICDVACHAL----NSIPVETVKLVAERLRDKSVLVKR 398 (1675)
Q Consensus 338 ~~~~ei~~~L~~---r-L~--D~---------DEkVR~aaV~ai~~la~~~l----~~Vs~elL~~laeR~RDKK~~VRk 398 (1675)
.+..++++.|.. . .. |. +..|..+|+.+.+=+..... ...-.+.+..+.+.+--....||.
T Consensus 167 ~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRi 246 (309)
T PF05004_consen 167 EETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRI 246 (309)
T ss_pred hHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 333333344441 1 11 21 35688888888766653221 111223445566766777889999
Q ss_pred HHHHHHHHHHHHHh
Q 000318 399 YTMERLADIFRGCC 412 (1675)
Q Consensus 399 eAm~~La~LY~~~~ 412 (1675)
.|=+.||-||-..+
T Consensus 247 AAGEaiAll~E~~~ 260 (309)
T PF05004_consen 247 AAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999875
No 127
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.77 E-value=5.3e+02 Score=33.97 Aligned_cols=283 Identities=14% Similarity=0.155 Sum_probs=170.9
Q ss_pred CChhhHH-HHHHHHHhhhhhheeccCC-chHHHHHHHHHHHHhhcCCChh-hHHHHHHHHHHHHhcccccccHHHHHHHH
Q 000318 118 PSFGRRV-VILETLAKYRSCVVMLDLE-CDELVNEMYSTFFAVASDDHPE-SVLSSMQTIMIVLLEESEDIQEDLLVILL 194 (1675)
Q Consensus 118 p~f~q~~-~LLE~LA~vks~vl~~DL~-~~~Li~~lF~~ff~~v~~~~~~-~V~~~m~~IL~~vI~Ese~vp~~vLd~IL 194 (1675)
..|.++. ..||-=--||-++.-.|.+ -+.+|.++-..|--.-..++.+ .+.......+..=++... .-..++-.++
T Consensus 12 KlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~-Y~~~iv~Pv~ 90 (675)
T KOG0212|consen 12 KLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAG-YLEKIVPPVL 90 (675)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHH-HHHHhhHHHH
Confidence 4455443 2233222344555545544 2456666666554322222222 233222222222222222 4566777788
Q ss_pred HHhcCCCcH-------HHHHHHHHHHHHhhhhhHHHHHHHHHHhh------cCCCCCCCCcchHHHHHHHHHhh-----c
Q 000318 195 SALGRNKND-------TARRLAMNVIEQCAGKLEAGIKQFLVSSM------SGDSRPGHSHIDYHEVIYDVYRC-----S 256 (1675)
Q Consensus 195 ~~l~~~~~~-------~a~~lA~~v~~~~~dkL~~~I~qyf~~il------~~~~~~~~~~~~~h~Li~eL~~~-----~ 256 (1675)
+.|...... +.|++|+- |- ..|--||+.+. ..|+. ......-+|+-.|.+- +
T Consensus 91 ~cf~D~d~~vRyyACEsLYNiaKv----~k----~~v~~~Fn~iFdvL~klsaDsd--~~V~~~aeLLdRLikdIVte~~ 160 (675)
T KOG0212|consen 91 NCFSDQDSQVRYYACESLYNIAKV----AK----GEVLVYFNEIFDVLCKLSADSD--QNVRGGAELLDRLIKDIVTESA 160 (675)
T ss_pred HhccCccceeeeHhHHHHHHHHHH----hc----cCcccchHHHHHHHHHHhcCCc--cccccHHHHHHHHHHHhccccc
Confidence 888644322 55666652 22 23444565543 22211 1111223333333321 2
Q ss_pred -chhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHh---
Q 000318 257 -PQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLL--- 332 (1675)
Q Consensus 257 -P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~--- 332 (1675)
-=-|...||.|.+-+-.-++..|.-.+.-+--+.+.|+.+|..--|+++.-.+.=..|-+.+||..+=.+...+|.
T Consensus 161 ~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~ 240 (675)
T KOG0212|consen 161 STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIR 240 (675)
T ss_pred cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh
Confidence 2236779999999999999999999999999999999999998889999999999999999999887777666664
Q ss_pred cCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCCC---CHHHHHHHHHhhccCCh-hHHHHHHHH---HH
Q 000318 333 TDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI---PVETVKLVAERLRDKSV-LVKRYTMER---LA 405 (1675)
Q Consensus 333 ~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V---s~elL~~laeR~RDKK~-~VRkeAm~~---La 405 (1675)
+.|+.-+..++++.+...+.-+++..+..|+.-|.++.......+ -..+|..+..-+-|+-. .++..|... |.
T Consensus 241 s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~ 320 (675)
T KOG0212|consen 241 SSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLL 320 (675)
T ss_pred cCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHH
Confidence 457653456899999999999999999998888877665433322 12345555666667665 466554433 44
Q ss_pred HHHHHH
Q 000318 406 DIFRGC 411 (1675)
Q Consensus 406 ~LY~~~ 411 (1675)
++...+
T Consensus 321 ~l~s~~ 326 (675)
T KOG0212|consen 321 KLVSSE 326 (675)
T ss_pred HHHhhh
Confidence 444443
No 128
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=59.46 E-value=74 Score=41.98 Aligned_cols=188 Identities=17% Similarity=0.245 Sum_probs=99.8
Q ss_pred HHHHHHhc-cCCCCCCCCChhhHHHHHHHHHhhhhhheeccCCchHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhc
Q 000318 102 FQLIVGTF-SGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLE 180 (1675)
Q Consensus 102 F~l~v~qf-~~L~d~~~p~f~q~~~LLE~LA~vks~vl~~DL~~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~ 180 (1675)
|..++.+| ......+.+.-.+-..+| -....||-++|-.|..||..+++.-.- +.+..+.......+..++.
T Consensus 31 Y~~L~~~l~~~~~~~d~~~~~~l~~~L---~~L~~~Vs~Ld~~~~~LV~ail~~~W~----~~~~~~v~~y~~Fl~~Lvs 103 (563)
T PF05327_consen 31 YDELVEQLSDPSESKDAISVSQLIRWL---KALSSCVSLLDSSCKQLVEAILSLNWL----GRDEDFVEAYIQFLINLVS 103 (563)
T ss_dssp HHHHHHHHHS-TT-TTS--HHHHHHHH---HHHHHGGGGG-SCCHHHHHHHHT-TGG----GS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccccCcccccHHHHHHHH---HHHHHHHHHhhhHHHHHHHHHHcCCCC----CCCHHHHHHHHHHHHHHHH
Confidence 45555555 333333343434444444 445567777887788998888777332 2255677777788888877
Q ss_pred ccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCCCCC--CCCcchHHHHHHHHHhhcch
Q 000318 181 ESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRP--GHSHIDYHEVIYDVYRCSPQ 258 (1675)
Q Consensus 181 Ese~vp~~vLd~IL~~l~~~~~~~a~~lA~~v~~~~~dkL~~~I~qyf~~il~~~~~~--~~~~~~~h~Li~eL~~~~P~ 258 (1675)
....--..+|+.|..+|.+.....+-. .+.... ......+|.+|..|-+++|.
T Consensus 104 a~~~yl~~vl~~LV~~f~p~~~~~~~~-------------------------~~~~~~~~~~~~~~vH~~L~~Il~lvP~ 158 (563)
T PF05327_consen 104 AQPKYLSPVLSMLVKNFIPPPSSIAEW-------------------------PGCPPEKRREIYERVHDALQKILRLVPT 158 (563)
T ss_dssp H-GGGHHHHHHHHHHGGGS-HHHHHH----------------------------------------HHHHHHHHHHH-GG
T ss_pred hhHHHHHHHHHHHHHhccCCCcccccc-------------------------chhhhhhhhhhHHHHHHHHHHHHHHcCC
Confidence 777777888888888887643211000 111000 11223689999999999999
Q ss_pred hhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHH
Q 000318 259 ILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSV 323 (1675)
Q Consensus 259 lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~ 323 (1675)
....++|.|....=.-....+...+ -+-.|+.-.+. ...--..+|..-+.|...++++|.+.|
T Consensus 159 s~~~L~~~l~~~FP~~~~~~~~~~~-Yv~NlL~l~~Y-~P~L~~~Il~lIi~rLi~iDVeiq~~~ 221 (563)
T PF05327_consen 159 SPSFLIPILVQNFPHKRKSKDEHVN-YVRNLLRLTEY-CPELRSDILSLIIERLIKIDVEIQIEL 221 (563)
T ss_dssp GHHHHHHHHHHTS--TTS-HHHHHH-HHHHHHHHHCC--GGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCcCCCCChHHHHH-HHHHHHHHHcc-hHHHHHHHHHHHHHHHHHHhcccccCc
Confidence 9988888887766554444333322 22222221110 123334666666666666666555544
No 129
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins []. Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....
Probab=58.91 E-value=20 Score=35.88 Aligned_cols=53 Identities=17% Similarity=0.133 Sum_probs=40.5
Q ss_pred CccccCceEEEecCCCCceEEEEEEEecCCCCeeEEEc-cCCcceeeecCcccEEEe
Q 000318 1373 IEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILY-DDEDVEVLRLDKERWELL 1428 (1675)
Q Consensus 1373 ~~~lvG~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~Y-dDGd~E~l~L~~e~~~~~ 1428 (1675)
....+|..+-+.=+.|..||.|.| ..+...+.-.|.| |-|..+.+... +++.+
T Consensus 50 ~~~~~~~~~~~~~~~~~~w~Ra~I-~~~~~~~~~~V~~iD~G~~~~v~~~--~l~~l 103 (121)
T PF00567_consen 50 PESNPGEGCLCVVSEDGRWYRAVI-TVDIDENQYKVFLIDYGNTEKVSAS--DLRPL 103 (121)
T ss_dssp ST--TTEEEEEEETTTSEEEEEEE-EEEECTTEEEEEETTTTEEEEEEGG--GEEE-
T ss_pred cccccCCEEEEEEecCCceeeEEE-EEecccceeEEEEEecCceEEEcHH--Hhhhh
Confidence 445588888888899999999999 7777788888988 99999997654 44443
No 130
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=58.82 E-value=6.3e+02 Score=34.48 Aligned_cols=67 Identities=16% Similarity=0.172 Sum_probs=28.8
Q ss_pred HHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000318 343 ILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1675)
Q Consensus 343 i~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~Vs~elL~~laeR~RDKK~~VRkeAm~~La~LY~~ 410 (1675)
.+..|..-..|+=+.|+..++++|.++-+..++. -..+|..|...+-|+...|=-.|--.|-.|-+.
T Consensus 305 fievLe~lS~D~L~~vk~raL~ti~~lL~~kPEq-E~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~ 371 (988)
T KOG2038|consen 305 FIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQ-ENNLLVLLVNKLGDPQNKIASKASYLLEGLLAK 371 (988)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHH-HHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhh
Confidence 3444444444555555555555444433333210 011344444444454444444444444444443
No 131
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=58.70 E-value=19 Score=38.05 Aligned_cols=41 Identities=22% Similarity=0.394 Sum_probs=35.8
Q ss_pred CceEEEecCCCCceEEEEEEEecCCCCeeEEEccCCcceeee
Q 000318 1378 GYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLR 1419 (1675)
Q Consensus 1378 G~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdDGd~E~l~ 1419 (1675)
|.+|=..|+.|.-||.|+|..+- ..+.-.|.+++|+.+.+.
T Consensus 1 g~~VlAR~~~DG~YY~GtV~~~~-~~~~~lV~f~~~~~~~v~ 41 (124)
T PF15057_consen 1 GQKVLARREEDGFYYPGTVKKCV-SSGQFLVEFDDGDTQEVP 41 (124)
T ss_pred CCeEEEeeCCCCcEEeEEEEEcc-CCCEEEEEECCCCEEEeC
Confidence 77888999999999999999998 667788888888887774
No 132
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=58.11 E-value=4.5e+02 Score=32.62 Aligned_cols=87 Identities=15% Similarity=0.228 Sum_probs=56.9
Q ss_pred hcccccCCchHHHHHHHHHHHHhhcCCC-CCchhhc---HHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCC-Ch-
Q 000318 267 LTGELLTDQLDTRLKAVGLVGDLFAVPG-SANNEQF---HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRA-DA- 340 (1675)
Q Consensus 267 Le~EL~sed~~~Rl~At~llG~mfs~~~-s~~a~~y---~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~-~~- 340 (1675)
...-|.++|=-+|..++++||+++..+. .+++..| |+-....+.=..|++..||.+...--+ +.++||... .+
T Consensus 214 ~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFK-vFVANp~K~~~I~ 292 (335)
T PF08569_consen 214 YNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFK-VFVANPNKPPPIV 292 (335)
T ss_dssp HHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHH-HHHH-SS-BHHHH
T ss_pred HHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHH-HHHhCCCCChHHH
Confidence 3444678898899999999999999864 2234444 888888899999999999999865544 555667532 11
Q ss_pred -------HHHHHHHHhhhCCc
Q 000318 341 -------PQILTALCDRLLDF 354 (1675)
Q Consensus 341 -------~ei~~~L~~rL~D~ 354 (1675)
.-++..|.+-..|.
T Consensus 293 ~iL~~Nr~kLl~fl~~f~~~~ 313 (335)
T PF08569_consen 293 DILIKNREKLLRFLKDFHTDR 313 (335)
T ss_dssp HHHHHTHHHHHHHHHTTTTT-
T ss_pred HHHHHHHHHHHHHHHhCCCCC
Confidence 13345555556666
No 133
>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification]
Probab=57.61 E-value=15 Score=42.23 Aligned_cols=36 Identities=19% Similarity=0.404 Sum_probs=30.8
Q ss_pred cccCceEEEecCCCCceEEEEEEEecCCCCeeEEEc
Q 000318 1375 DLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILY 1410 (1675)
Q Consensus 1375 ~lvG~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~Y 1410 (1675)
.=||.+|.+-|++|..||.++|....+.++.-.|.+
T Consensus 91 w~vg~K~~A~~~ddg~~y~AtIe~ita~~~~~ai~f 126 (262)
T KOG3026|consen 91 WKVGDKVQAVFSDDGQIYDATIEHITAMEGTVAIIF 126 (262)
T ss_pred cccCCEEEEeecCCCceEEeehhhccCCCCceeEEE
Confidence 349999999999999999999999999766655554
No 134
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=57.27 E-value=1.1e+02 Score=34.78 Aligned_cols=130 Identities=17% Similarity=0.158 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHhhcC-CCCCc---------------hhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcC-------
Q 000318 278 TRLKAVGLVGDLFAV-PGSAN---------------NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD------- 334 (1675)
Q Consensus 278 ~Rl~At~llG~mfs~-~~s~~---------------a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~------- 334 (1675)
+|+.|..+|+.++.. +.-.| ....++++...+ .|.++.||+..+.....+|...
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il---~Dp~~kvR~aA~~~l~~lL~gsk~~L~~A 78 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCIL---KDPSPKVRAAAASALAALLEGSKPFLAQA 78 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHH---cCCchhHHHHHHHHHHHHHHccHHHHHHH
Confidence 799999999999877 32111 122344444444 4999999999999998877532
Q ss_pred -----CCC---CC---hHHHHHHHHhhh-----CCchhHHHHHHHHHHHHhhh-hhcCCCCHHH----HHHHHHhhccCC
Q 000318 335 -----PSR---AD---APQILTALCDRL-----LDFDENVRKQVVAVICDVAC-HALNSIPVET----VKLVAERLRDKS 393 (1675)
Q Consensus 335 -----p~~---~~---~~ei~~~L~~rL-----~D~DEkVR~aaV~ai~~la~-~~l~~Vs~el----L~~laeR~RDKK 393 (1675)
+.+ .. ...++..+...| ...+-.+=.+.++++..+.. ..++.++.++ +..+..+++.+.
T Consensus 79 e~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d 158 (182)
T PF13251_consen 79 EESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRD 158 (182)
T ss_pred HhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCC
Confidence 110 11 123444444433 45566677788888877765 3356677765 457888999999
Q ss_pred hhHHHHHHHHHHHHHHH
Q 000318 394 VLVKRYTMERLADIFRG 410 (1675)
Q Consensus 394 ~~VRkeAm~~La~LY~~ 410 (1675)
+.||..++..++-+...
T Consensus 159 ~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 159 PNVRVAALSCLGALLSV 175 (182)
T ss_pred CcHHHHHHHHHHHHHcC
Confidence 99999999999988764
No 135
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=56.68 E-value=26 Score=31.66 Aligned_cols=43 Identities=19% Similarity=0.252 Sum_probs=33.6
Q ss_pred cCceEEEecCCCCceEEEEEEEecCCCC--eeEEEccCCc---ceeeec
Q 000318 1377 IGYRIKVWWPMDKQFYEGTIKSYDPIKK--KHVILYDDED---VEVLRL 1420 (1675)
Q Consensus 1377 vG~rv~V~Wp~D~~~Y~G~V~~y~~~~~--~H~v~YdDGd---~E~l~L 1420 (1675)
||.+|.+.| .+..||.++|..-....+ ...|.|..=+ .||+..
T Consensus 3 vG~~v~~~~-~~~~~y~A~I~~~r~~~~~~~YyVHY~g~nkR~DeWV~~ 50 (55)
T PF11717_consen 3 VGEKVLCKY-KDGQWYEAKILDIREKNGEPEYYVHYQGWNKRLDEWVPE 50 (55)
T ss_dssp TTEEEEEEE-TTTEEEEEEEEEEEECTTCEEEEEEETTSTGCC-EEEET
T ss_pred cCCEEEEEE-CCCcEEEEEEEEEEecCCCEEEEEEcCCCCCCceeeecH
Confidence 899999999 899999999999988664 5778886444 456543
No 136
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=56.47 E-value=12 Score=49.50 Aligned_cols=46 Identities=24% Similarity=0.518 Sum_probs=36.6
Q ss_pred ccccCceEEEecCCC----CceEEEEEEEecCCCC--------eeEEEccCCcceeee
Q 000318 1374 EDLIGYRIKVWWPMD----KQFYEGTIKSYDPIKK--------KHVILYDDEDVEVLR 1419 (1675)
Q Consensus 1374 ~~lvG~rv~V~Wp~D----~~~Y~G~V~~y~~~~~--------~H~v~YdDGd~E~l~ 1419 (1675)
+.-.+-+|||||-+. .+|++|+|-+.-|..- ++.|+||.|+.|.+.
T Consensus 978 nW~~~d~crvwwrda~~e~g~WWeG~ils~~pksp~fpdSpwery~v~~~~~e~~~~s 1035 (1113)
T KOG0644|consen 978 NWTCRDKCRVWWRDAGEEDGAWWEGRILSVKPKSPDFPDSPWERYIVRYDNTETELHS 1035 (1113)
T ss_pred ccccccceeEEEccCCCcCCceeeeeeeeccCCCCCCCCCcceeEEEEecCCcccccC
Confidence 444789999999864 7899999999776543 689999999776554
No 137
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=54.02 E-value=7.5e+02 Score=33.89 Aligned_cols=163 Identities=18% Similarity=0.197 Sum_probs=81.7
Q ss_pred hhccHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHHhcCCCc---hHHHHHHHHHhhhc------cccChhHHHHHHHHHH
Q 000318 545 QLKDANVWKILMNLLDSNTSFDQA-FTGRDDLLKILGAKHR---LYDFLSTLSMKCSY------LLFNKEHVKEILLEVA 614 (1675)
Q Consensus 545 klnD~Ri~kLLk~~idp~td~~t~-~~a~kELlkkL~~~~~---~~d~l~~Ll~R~S~------li~Nks~V~~LL~~v~ 614 (1675)
+.+|.-++++|+++...+...+.. ......|++.+..... ..+.+-+|-.-..+ ++-+..-||.|.+.+.
T Consensus 464 ~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~ 543 (708)
T PF05804_consen 464 KTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLK 543 (708)
T ss_pred hcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhC
Confidence 457889999999998876444333 3445566666654322 34445544332211 2223455666666553
Q ss_pred hhcccchhhhHHHHHHHHHHHHhhC-----CcCcc--ccHHHHHHHHhhccccchHhHHHHHHHhhcchhhh-----hhc
Q 000318 615 AQKSSANAQFMQSCMDILGILARFS-----PLLLG--GTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQ-----LAA 682 (1675)
Q Consensus 615 ~~~~~~~~~~~~~a~eLL~~IS~~~-----P~lFk--~~v~~Li~lL~~~~~~~~~~aLkiLak~~k~~~e~-----~~~ 682 (1675)
... ..++ ..++....++..+ ..++. +.+..|+++|....+ --+-+||+++-+...+... +-
T Consensus 544 ~g~-~~dD----l~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqe-DdE~VlQil~~f~~ll~h~~tr~~ll- 616 (708)
T PF05804_consen 544 PGA-SEDD----LLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQE-DDEIVLQILYVFYQLLFHEETREVLL- 616 (708)
T ss_pred CCC-CChH----HHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCc-hHHHHHHHHHHHHHHHcChHHHHHHH-
Confidence 211 1111 1223333333222 22222 447899999987432 1356888888776543321 11
Q ss_pred ccchHHHHHHHHhhcCChHHHHHHHHHHHhhc
Q 000318 683 TSSSVDLLLERLCLEGSRRQAKYAVHALAAIT 714 (1675)
Q Consensus 683 ~~s~l~~~L~~lal~GtpkqAKyAvr~Laa~~ 714 (1675)
.......-|-++.-..++..+|.|=.||-.+.
T Consensus 617 ~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~ 648 (708)
T PF05804_consen 617 KETEIPAYLIDLMHDKNAEIRKVCDNALDIIA 648 (708)
T ss_pred hccchHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 11223333434444445566666666655444
No 138
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=53.91 E-value=3.1e+02 Score=38.44 Aligned_cols=137 Identities=15% Similarity=0.133 Sum_probs=83.8
Q ss_pred cchhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCCCC-CchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcC
Q 000318 256 SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGS-ANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD 334 (1675)
Q Consensus 256 ~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s-~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~ 334 (1675)
.+.++.--+.+|+.- .+.-+|+=+.-+||+++..-.. .+.=..-......+.=..|-.|+||.+.|-+.+.+|.+-
T Consensus 597 ~~~li~iCle~lnd~---~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 597 NGNLIGICLEHLNDD---PEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred cccHHHHHHHHhcCC---ccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 444444333343332 2688999999999999987532 122223334445556678999999999999999998864
Q ss_pred CCCCChHHHHHHHHhhhCC-chhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHh
Q 000318 335 PSRADAPQILTALCDRLLD-FDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCC 412 (1675)
Q Consensus 335 p~~~~~~ei~~~L~~rL~D-~DEkVR~aaV~ai~~la~~~l~~Vs~elL~~laeR~RDKK~~VRkeAm~~La~LY~~~~ 412 (1675)
.+.-+ --....+++.| +|++++.+-. ....+-.++.++.|=.+-||.+-...|+.+-..|.
T Consensus 674 ~d~fd---e~~~~~~~~~~l~~~~~~~E~~--------------i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~ 735 (1387)
T KOG1517|consen 674 SDNFD---EQTLVVEEEIDLDDERTSIEDL--------------IIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYV 735 (1387)
T ss_pred ccccc---hhhhhhhhhhcchhhhhhHHHH--------------HHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhH
Confidence 32111 11122233444 4444444311 11112356789999999999998888887766553
No 139
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=53.89 E-value=1.4e+02 Score=39.22 Aligned_cols=83 Identities=14% Similarity=0.179 Sum_probs=54.1
Q ss_pred CchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCC
Q 000318 274 DQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLD 353 (1675)
Q Consensus 274 ed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D 353 (1675)
-+..+..+|-+.+.+.|.. |..---..+++.|.=+-|-++.||+..++..+.+-..+|. ..+-|.+.|...|.
T Consensus 34 g~~k~K~Laaq~I~kffk~----FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~--~v~kvaDvL~QlL~- 106 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKH----FPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE--HVSKVADVLVQLLQ- 106 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-----GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T---HHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHHHhh----ChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH--HHhHHHHHHHHHHh-
Confidence 3566778888888888874 5555667888888888899999999988888887776664 35677778777666
Q ss_pred chhHHHHHHH
Q 000318 354 FDENVRKQVV 363 (1675)
Q Consensus 354 ~DEkVR~aaV 363 (1675)
+|+.+=+.+|
T Consensus 107 tdd~~E~~~v 116 (556)
T PF05918_consen 107 TDDPVELDAV 116 (556)
T ss_dssp ---HHHHHHH
T ss_pred cccHHHHHHH
Confidence 5554444433
No 140
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=53.89 E-value=6.6e+02 Score=33.22 Aligned_cols=333 Identities=15% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHccccCCCCCCHHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhchh-hhhcCCCcchhHHHHHHHHHHh
Q 000318 6 EQQLKEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQP-VLLKHQDKDVKLLVATCICEIT 84 (1675)
Q Consensus 6 ~~~l~~~g~kL~~~~~s~~eLlkrLk~L~~~Ls~~dQ~~~~~~~~sl~~~~~~Lv~~-~LL~HkD~~Vr~~vAcCLadIl 84 (1675)
|-.+-.||+-+.+|.. +.|.+..-++---+-.+.-|+.--..+.-.-++-.+.+. .-.-++-..+-..|..|+--++
T Consensus 384 eaavmAfGSvm~gp~~--~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~ 461 (858)
T COG5215 384 EAAVMAFGSVMHGPCE--DCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLM 461 (858)
T ss_pred HHHHHHhhhhhcCccH--HHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhh
Q ss_pred hhcCCCCCCChhHHHHHHHHHHHhcc-CCCCCCCCChhhHHHHHHHH------------HhhhhhheeccCC--chHHHH
Q 000318 85 RITAPEAPYSDDVLKDIFQLIVGTFS-GLKDTGGPSFGRRVVILETL------------AKYRSCVVMLDLE--CDELVN 149 (1675)
Q Consensus 85 RI~APdAPytd~qLkdIF~l~v~qf~-~L~d~~~p~f~q~~~LLE~L------------A~vks~vl~~DL~--~~~Li~ 149 (1675)
|-||-..--.--|.=|+.+|. .-.+..++.|+.|.-||..| +.+-.|--+.-|= |-+-+.
T Consensus 462 -----D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~ 536 (858)
T COG5215 462 -----DCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVS 536 (858)
T ss_pred -----ccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHH
Q ss_pred HHHHHHHHhhc----------------------CCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHhcCCCcHHHHH
Q 000318 150 EMYSTFFAVAS----------------------DDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARR 207 (1675)
Q Consensus 150 ~lF~~ff~~v~----------------------~~~~~~V~~~m~~IL~~vI~Ese~vp~~vLd~IL~~l~~~~~~~a~~ 207 (1675)
++.-.|++.+. .+.+.++...+..|...-=...+.+...++...+..+...+..-++.
T Consensus 537 ~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~ 616 (858)
T COG5215 537 DILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFG 616 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhh
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhcchhhhhhhhhhcccccCCchHHHHHHHHHHH
Q 000318 208 LAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVG 287 (1675)
Q Consensus 208 lA~~v~~~~~dkL~~~I~qyf~~il~~~~~~~~~~~~~h~Li~eL~~~~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG 287 (1675)
=.---|..-+..|+..+.+|...++-= +...|+...-.++.++++.+-.--.+=+.+.|..|+.+..
T Consensus 617 dV~~aIsal~~sl~e~Fe~y~~~fiPy-------------l~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms 683 (858)
T COG5215 617 DVYTAISALSTSLEERFEQYASKFIPY-------------LTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMS 683 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHH-------------HHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q ss_pred HhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHh-------cCCCCCChHHHHHHHHhhhCCchhHHHH
Q 000318 288 DLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLL-------TDPSRADAPQILTALCDRLLDFDENVRK 360 (1675)
Q Consensus 288 ~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~-------~~p~~~~~~ei~~~L~~rL~D~DEkVR~ 360 (1675)
.+.-.-. -...|+++=-+-|+-|.|+...|-..+..+.-.|.+ ..|+.++ --..|.-.++|.
T Consensus 684 ~LvQ~ls--s~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~~---------~~~~dy~~~~~~ 752 (858)
T COG5215 684 SLVQCLS--SEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSDE---------VYVDDYRKNAVQ 752 (858)
T ss_pred HHHHHhc--ChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCc---------eeHHHHHHHHHH
Q ss_pred HHHHHHHHh
Q 000318 361 QVVAVICDV 369 (1675)
Q Consensus 361 aaV~ai~~l 369 (1675)
.++.++..+
T Consensus 753 ~v~~ayVgI 761 (858)
T COG5215 753 LVNCAYVGI 761 (858)
T ss_pred HHHHHHHHh
No 141
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=53.67 E-value=6.7e+02 Score=33.25 Aligned_cols=196 Identities=22% Similarity=0.202 Sum_probs=113.8
Q ss_pred hHHHHHHHHHhhhhhheeccCC-chHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHhcC-
Q 000318 122 RRVVILETLAKYRSCVVMLDLE-CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGR- 199 (1675)
Q Consensus 122 q~~~LLE~LA~vks~vl~~DL~-~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Ese~vp~~vLd~IL~~l~~- 199 (1675)
+-+..|.++-++ .|.|.| ..+++...|.+++..+ +..-++|..-.+.||..+.+--..|...+-..++..+..
T Consensus 66 Ril~fl~~f~~Y----~~~~dpeg~~~V~~~~~h~lRg~-eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R 140 (885)
T COG5218 66 RILSFLKRFFEY----DMPDDPEGEELVAGTFYHLLRGT-ESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSER 140 (885)
T ss_pred HHHHHHHHHHHh----cCCCChhhhHHHHHHHHHHHhcc-cCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 444555554443 477777 6899999988887654 344567888888999888877777777777766655521
Q ss_pred --CCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhcchhhhhhhhhhcccccCCchH
Q 000318 200 --NKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLD 277 (1675)
Q Consensus 200 --~~~~~a~~lA~~v~~~~~dkL~~~I~qyf~~il~~~~~~~~~~~~~h~Li~eL~~~~P~lL~~ViPqLe~EL~sed~~ 277 (1675)
.+..+.+.=|..+ -.||.++ .+ +...+.-.++..+-+..|+ .+
T Consensus 141 ~~DRE~~VR~eAv~~------------L~~~Qe~-~~-----neen~~~n~l~~~vqnDPS-----------------~E 185 (885)
T COG5218 141 LFDREKAVRREAVKV------------LCYYQEM-EL-----NEENRIVNLLKDIVQNDPS-----------------DE 185 (885)
T ss_pred HhcchHHHHHHHHHH------------HHHHHhc-cC-----ChHHHHHHHHHHHHhcCcH-----------------HH
Confidence 1111112112111 1233332 11 1222334466655555553 56
Q ss_pred HHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCchhH
Q 000318 278 TRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDEN 357 (1675)
Q Consensus 278 ~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEk 357 (1675)
+|..|.- +++. -++|+-.-|.|..|.+...|..+-+.+-.-+---.+.+....|. .+.--|.|-|..
T Consensus 186 VRr~all----ni~v--------dnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~-l~ewgl~dRe~s 252 (885)
T COG5218 186 VRRLALL----NISV--------DNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRIL-LMEWGLLDREFS 252 (885)
T ss_pred HHHHHHH----Heee--------CCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceeh-hhhhcchhhhhh
Confidence 7777642 2222 22467788999999999999877665422110000111111222 455578999999
Q ss_pred HHHHHHHHHHHhh
Q 000318 358 VRKQVVAVICDVA 370 (1675)
Q Consensus 358 VR~aaV~ai~~la 370 (1675)
||.|++.+|..-.
T Consensus 253 v~~a~~d~ia~~w 265 (885)
T COG5218 253 VKGALVDAIASAW 265 (885)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999985533
No 142
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=53.20 E-value=94 Score=37.81 Aligned_cols=48 Identities=23% Similarity=0.360 Sum_probs=41.8
Q ss_pred hHHHHHHHHHhhcchhhh-----hhhhhhcccccC-CchHHHHHHHHHHHHhhc
Q 000318 244 DYHEVIYDVYRCSPQILS-----GVVPYLTGELLT-DQLDTRLKAVGLVGDLFA 291 (1675)
Q Consensus 244 ~~h~Li~eL~~~~P~lL~-----~ViPqLe~EL~s-ed~~~Rl~At~llG~mfs 291 (1675)
+.++||.+|+.++|..+. +.+-+|+.||.. +|+-+|....+++-.+.-
T Consensus 190 RVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLae 243 (524)
T KOG4413|consen 190 RVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAE 243 (524)
T ss_pred HHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHH
Confidence 679999999999999985 468899999996 899999999998877653
No 143
>KOG2393 consensus Transcription initiation factor IIF, large subunit (RAP74) [Transcription]
Probab=52.42 E-value=31 Score=44.07 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=13.6
Q ss_pred cccccCCCCCCcccccCCCCCCCCC
Q 000318 1569 DEVDKMDSEEKPAEEVGSVPQDEKS 1593 (1675)
Q Consensus 1569 ~~~~~~~~~~~~~~~~~~~~~~~~~ 1593 (1675)
++++..+|++. +.|-|-.||-.+.
T Consensus 292 ~e~~E~DYdee-~addEE~Peik~d 315 (555)
T KOG2393|consen 292 NEGRELDYDEE-SADDEEAPEIKGD 315 (555)
T ss_pred ccccccccccc-cCCcccccccccc
Confidence 34455667777 5555555665553
No 144
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=50.71 E-value=49 Score=44.80 Aligned_cols=135 Identities=18% Similarity=0.241 Sum_probs=100.7
Q ss_pred CchHHHHHHHHHHHHhhcCCC-CCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhC
Q 000318 274 DQLDTRLKAVGLVGDLFAVPG-SANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLL 352 (1675)
Q Consensus 274 ed~~~Rl~At~llG~mfs~~~-s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~ 352 (1675)
|--+-|..|..++|.++..-. -.+-...++.+..+ ..|..+.||.++.+.++.+-..-+.....+.+...+..-+.
T Consensus 210 d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~l---c~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~ 286 (759)
T KOG0211|consen 210 DWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSL---CQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLR 286 (759)
T ss_pred hhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhh---ccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhh
Confidence 334478888888888886533 22334555555555 57999999999999888765544444445678889999999
Q ss_pred CchhHHHHHHHHHHHHhhh-hhcC-CCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHH
Q 000318 353 DFDENVRKQVVAVICDVAC-HALN-SIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1675)
Q Consensus 353 D~DEkVR~aaV~ai~~la~-~~l~-~Vs~elL~~laeR~RDKK~~VRkeAm~~La~LY~~~ 411 (1675)
|-.+.||.+|+.....+.. ..-. .+-..+..++..-.-|+.+.||--.+.....+|...
T Consensus 287 DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~ 347 (759)
T KOG0211|consen 287 DDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAV 347 (759)
T ss_pred cchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHh
Confidence 9999999999999877654 2222 333456677888899999999999999999999975
No 145
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=50.66 E-value=7.4e+02 Score=32.89 Aligned_cols=108 Identities=19% Similarity=0.172 Sum_probs=58.7
Q ss_pred cccHHHHHHHHhh--ccccchHhHHHHHHHhhcchhhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccch
Q 000318 644 GGTEEELVNLLKE--ENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKS 721 (1675)
Q Consensus 644 k~~v~~Li~lL~~--~~~~~~~~aLkiLak~~k~~~e~~~~~~s~l~~~L~~lal~GtpkqAKyAvr~Laa~~~~~~~~~ 721 (1675)
..|+++...+|.- .++.+...+-+.++++.+. ||.....-+..+-+||...+...=+.|++.|-.++++.. ..
T Consensus 19 ~~~~~~y~~il~~~kg~~k~K~Laaq~I~kffk~----FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~-~~ 93 (556)
T PF05918_consen 19 SQHEEDYKEILDGVKGSPKEKRLAAQFIPKFFKH----FPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP-EH 93 (556)
T ss_dssp GGGHHHHHHHHHGGGS-HHHHHHHHHHHHHHHCC-----GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-
T ss_pred ccCHHHHHHHHHHccCCHHHHHHHHHHHHHHHhh----ChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH-HH
Confidence 3455555555543 2233444455556566555 555556667778899999998888899999998888643 22
Q ss_pred HHHHHHHHHHhhhhcC--CCchHHHHHHHHHhhcccc
Q 000318 722 LSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAMPV 756 (1675)
Q Consensus 722 ~~~L~~~L~~~L~~~~--~l~t~L~sLg~Iaq~aP~v 756 (1675)
+..+..-|+..|...+ .+..+=.+|.+|.+..|..
T Consensus 94 v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~ 130 (556)
T PF05918_consen 94 VSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG 130 (556)
T ss_dssp HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH
T ss_pred HhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH
Confidence 2223333444443221 3334446777787777744
No 146
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=50.65 E-value=4.2e+02 Score=30.91 Aligned_cols=129 Identities=17% Similarity=0.055 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhhCCcCccccHHHHHHHHhhc------cccchHhHHHHHHHhhcchhhhhhcccchHHHHHHHHh-hc
Q 000318 625 MQSCMDILGILARFSPLLLGGTEEELVNLLKEE------NEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLC-LE 697 (1675)
Q Consensus 625 ~~~a~eLL~~IS~~~P~lFk~~v~~Li~lL~~~------~~~~~~~aLkiLak~~k~~~e~~~~~~s~l~~~L~~la-l~ 697 (1675)
...++++|..+-...|..| +..+.++..+.-. +.......+-.++..-..+-...|.....+...+..+. ..
T Consensus 55 ~~~~~rLl~~lw~~~~r~f-~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~~~ 133 (234)
T PF12530_consen 55 RYVALRLLTLLWKANDRHF-PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGVDLLPLLSGCLNQS 133 (234)
T ss_pred HHHHHHHHHHHHHhCchHH-HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcc
Confidence 3467899999999999999 4445444441111 11111112222222222222223333345677777777 56
Q ss_pred CChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhhcCCCchHHHHHHHHHhhcccc
Q 000318 698 GSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPV 756 (1675)
Q Consensus 698 GtpkqAKyAvr~Laa~~~~~~~~~~~~L~~~L~~~L~~~~~l~t~L~sLg~Iaq~aP~v 756 (1675)
..+..+-.|+.+|..+...+ ...+....+-|...| ....-|.++.+|.+++.+.|..
T Consensus 134 ~~~~~~alale~l~~Lc~~~-vvd~~s~w~vl~~~l-~~~~rp~v~~~l~~l~~l~~~~ 190 (234)
T PF12530_consen 134 CDEVAQALALEALAPLCEAE-VVDFYSAWKVLQKKL-SLDYRPLVLKSLCSLFALVPQG 190 (234)
T ss_pred ccHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHhc-CCccchHHHHHHHHHHHHhccc
Confidence 77888889999999888543 233333445555555 2346788899999999987743
No 147
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=49.46 E-value=65 Score=36.26 Aligned_cols=70 Identities=14% Similarity=0.163 Sum_probs=58.1
Q ss_pred HHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHH
Q 000318 341 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1675)
Q Consensus 341 ~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~Vs~elL~~laeR~RDKK~~VRkeAm~~La~LY~~~ 411 (1675)
+.-++.+.+...+++..||..|+..+.-+....+- -|.+.+-++.-..-|....||..|...+..+...|
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLv-nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLV-NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCC-ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 44566777789999999999999999776654443 26777878888899999999999999999999987
No 148
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.97 E-value=8.7e+02 Score=33.21 Aligned_cols=157 Identities=16% Similarity=0.212 Sum_probs=103.9
Q ss_pred hhcc-hhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCCCCCc-hhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHH
Q 000318 254 RCSP-QILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSAN-NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCL 331 (1675)
Q Consensus 254 ~~~P-~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~-a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL 331 (1675)
+++- +++-.|+|++|+.++++|=..|-.|+-.+|-++-+|..+- ..-=+..-..-+.-..|.+.-||-.---..+.|.
T Consensus 355 ~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~ 434 (859)
T KOG1241|consen 355 QCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIA 434 (859)
T ss_pred HHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHH
Confidence 4443 3455799999999999999999999999999998885331 1111333334444555888888855555555555
Q ss_pred hcCCCC----CChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCCCCH------------HHH---HHHHHhhccC
Q 000318 332 LTDPSR----ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV------------ETV---KLVAERLRDK 392 (1675)
Q Consensus 332 ~~~p~~----~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~Vs~------------elL---~~laeR~RDK 392 (1675)
-..|+. ...+.++..|..=|+| ..+|=..+|-++..++....+..+. .++ -.+++|.-=-
T Consensus 435 d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgn 513 (859)
T KOG1241|consen 435 DFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGN 513 (859)
T ss_pred hhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccc
Confidence 554431 1223556677777776 5788889999988887433322211 122 2444555434
Q ss_pred ChhHHHHHHHHHHHHHHHH
Q 000318 393 SVLVKRYTMERLADIFRGC 411 (1675)
Q Consensus 393 K~~VRkeAm~~La~LY~~~ 411 (1675)
-...|..|-+.|+.+-+..
T Consensus 514 qsNLR~AAYeALmElIk~s 532 (859)
T KOG1241|consen 514 QSNLRSAAYEALMELIKNS 532 (859)
T ss_pred hhhHHHHHHHHHHHHHHcC
Confidence 5789999999999998853
No 149
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=47.75 E-value=5.6e+02 Score=30.63 Aligned_cols=64 Identities=16% Similarity=0.266 Sum_probs=44.1
Q ss_pred HHHHhhhCCchhHHHHHHHHHHHHhhhhhc-CCCCHH----HHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000318 345 TALCDRLLDFDENVRKQVVAVICDVACHAL-NSIPVE----TVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1675)
Q Consensus 345 ~~L~~rL~D~DEkVR~aaV~ai~~la~~~l-~~Vs~e----lL~~laeR~RDKK~~VRkeAm~~La~LY~~ 410 (1675)
+.|...|.+.|+.+|..++..++.+...-. ..++.. ++.....|+.|.. .|.- |+.+|..|.+.
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~-~~~~-~l~gl~~L~~~ 70 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHA-CVQP-ALKGLLALVKM 70 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHh-hHHH-HHHHHHHHHhC
Confidence 467889999999999999999887765433 223332 3467788886653 3433 37777777753
No 150
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=47.70 E-value=1.4e+02 Score=36.54 Aligned_cols=107 Identities=17% Similarity=0.217 Sum_probs=72.1
Q ss_pred HHHhhcchhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHH
Q 000318 251 DVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSC 330 (1675)
Q Consensus 251 eL~~~~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~i 330 (1675)
.|.-+.+.+|.+++|-||+| ..+.=-.+.+++-.+-..-+.. --|..+|.+.+ .+|.+|...+.++..-
T Consensus 131 ~L~p~l~~li~slLpGLede----~sE~~~~~~~ll~~l~~~v~~~--~F~~~lwl~ii-----~sp~~Rl~al~~l~~~ 199 (307)
T PF04118_consen 131 ALRPCLKGLILSLLPGLEDE----GSEFFDRTLKLLDKLKEAVGDK--YFWQCLWLCII-----TSPSRRLGALNYLLRR 199 (307)
T ss_pred HHHHHHHHHHHHhccccccC----CchHHHHHHHHHHHHHHhcChh--HHHHHHHHHHh-----cCcchhHHHHHHHHHh
Confidence 56678889999999999985 2233334444555444332222 34577888887 6899999988887654
Q ss_pred HhcCC------C--------CCChHHHHHHHHhhhCCchhHHHHHHHHHHHH
Q 000318 331 LLTDP------S--------RADAPQILTALCDRLLDFDENVRKQVVAVICD 368 (1675)
Q Consensus 331 L~~~p------~--------~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~ 368 (1675)
+-... . ..+..-++.+|+..|.|.+.-|++.+...+..
T Consensus 200 l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~ 251 (307)
T PF04118_consen 200 LPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLS 251 (307)
T ss_pred CCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 43211 0 12234577999999999999999997777644
No 151
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.07 E-value=1.1e+02 Score=37.39 Aligned_cols=162 Identities=13% Similarity=0.115 Sum_probs=115.9
Q ss_pred hHHHHHHHHHhhcchhhhh----hhhhhcccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhH
Q 000318 244 DYHEVIYDVYRCSPQILSG----VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAV 319 (1675)
Q Consensus 244 ~~h~Li~eL~~~~P~lL~~----ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~V 319 (1675)
+....|..|-.+.|+.|.+ ||.++-.+|+.-.-.+=..|+.++++||+.-+.-+.+.-..+-...|.|..+-..=|
T Consensus 107 dgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFv 186 (334)
T KOG2933|consen 107 DGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFV 186 (334)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHH
Confidence 4556777777777776554 899999999999999999999999999998766666777888889999988877778
Q ss_pred HHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcC------CCCHHHHHHHHHhhccCC
Q 000318 320 RMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN------SIPVETVKLVAERLRDKS 393 (1675)
Q Consensus 320 R~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~------~Vs~elL~~laeR~RDKK 393 (1675)
|...-++.-... +|-. ..-++..|...+.-+-.+||..++..+.... ..+. ....++...+++-++||=
T Consensus 187 reda~kAL~aMV-~~vt---p~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v-~rl~v~~~~~~~~~dl~~a~~~~~~d~L 261 (334)
T KOG2933|consen 187 REDAEKALVAMV-NHVT---PQKLLRKLIPILQHSNPRVRAKAALCFSRCV-IRLGVLPVLLQGSCDLSRAAQEQGSDKL 261 (334)
T ss_pred HHHHHHHHHHHH-hccC---hHHHHHHHHHHHhhhchhhhhhhhccccccc-eeccccchhhHhHHHHHHHHHhhhcccc
Confidence 877766665433 3322 2457888888899999999998544432111 1111 113356678999999999
Q ss_pred hhHHHHHHHHHHHHHHH
Q 000318 394 VLVKRYTMERLADIFRG 410 (1675)
Q Consensus 394 ~~VRkeAm~~La~LY~~ 410 (1675)
+.+|..|=-.+..+...
T Consensus 262 p~~~~~a~~~~~~~~~v 278 (334)
T KOG2933|consen 262 PELREAARFVRLELKEV 278 (334)
T ss_pred cccccchhHHHHhHHHH
Confidence 99996554444444443
No 152
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=45.70 E-value=1.1e+02 Score=40.01 Aligned_cols=130 Identities=17% Similarity=0.131 Sum_probs=89.9
Q ss_pred cCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHH--H----hcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHH
Q 000318 272 LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEF--L----KRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILT 345 (1675)
Q Consensus 272 ~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~f--L----~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~ 345 (1675)
..-+..+|..++.-++..... +|+.|..- | .=..|.+..||...++-...+...+|...-..+..+
T Consensus 285 ~Dv~d~IRv~c~~~L~dwi~l--------vP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~e 356 (740)
T COG5537 285 IDVDDVIRVLCSMSLRDWIGL--------VPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVE 356 (740)
T ss_pred cchhHHHHHHHHHHHHHHHhc--------chHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 345677899999999887753 34444321 1 125799999999999999988888887554455665
Q ss_pred HHHhh-----hCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChh---HHHHHHHHHHHHHHHHh
Q 000318 346 ALCDR-----LLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVL---VKRYTMERLADIFRGCC 412 (1675)
Q Consensus 346 ~L~~r-----L~D~DEkVR~aaV~ai~~la~~~l~~Vs~elL~~laeR~RDKK~~---VRkeAm~~La~LY~~~~ 412 (1675)
-+..| ..|.|= ||..+++..|.+.. +-.++..-+-.+.-.|-|=++. +|.++...++++-....
T Consensus 357 RFk~rILE~~r~D~d~-VRi~sik~l~~lr~--lg~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK~~aevi 428 (740)
T COG5537 357 RFKDRILEFLRTDSDC-VRICSIKSLCYLRI--LGVLSSSEILIVSSCMLDIIPDSRENIVESVESICKIDAEVI 428 (740)
T ss_pred HHHHHHHHHHhhccch-hhHHHHHHHHHHHH--hcccchhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHH
Confidence 55554 578888 99999999877543 3344454444455558888776 77888888887766554
No 153
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=45.50 E-value=5.6e+02 Score=29.94 Aligned_cols=71 Identities=23% Similarity=0.247 Sum_probs=49.2
Q ss_pred HHHHHHhhcchhhhhhhhhhcccc-cCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHH
Q 000318 248 VIYDVYRCSPQILSGVVPYLTGEL-LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 325 (1675)
Q Consensus 248 Li~eL~~~~P~lL~~ViPqLe~EL-~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve 325 (1675)
-+.++-+..|+-=..+++.|..=| ..+++..+..|++.+.-+.... +-.+..+|+...+++ +-+-|-.+++
T Consensus 107 s~~~ic~~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~----vvd~~s~w~vl~~~l---~~~~rp~v~~ 178 (234)
T PF12530_consen 107 SIRDICCSRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE----VVDFYSAWKVLQKKL---SLDYRPLVLK 178 (234)
T ss_pred HHHHHHHhChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh----hccHHHHHHHHHHhc---CCccchHHHH
Confidence 344455555654444556666666 7889999999999999999442 456778999999988 4444544454
No 154
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=45.48 E-value=1.2e+02 Score=34.23 Aligned_cols=98 Identities=14% Similarity=0.149 Sum_probs=72.2
Q ss_pred ccCCchHHHHHHHHHHHHhhcCCCC-------------Cc-----------hhhcHHHHHHHHhcccCCChhHHHHHHHH
Q 000318 271 LLTDQLDTRLKAVGLVGDLFAVPGS-------------AN-----------NEQFHSVFSEFLKRLTDRIVAVRMSVLEH 326 (1675)
Q Consensus 271 L~sed~~~Rl~At~llG~mfs~~~s-------------~~-----------a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~ 326 (1675)
|...+..+|..|..++.-|+.+... +| .+-|..+.... -...++.+=.+++++
T Consensus 49 l~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L---~~E~~~~~l~q~lK~ 125 (182)
T PF13251_consen 49 LKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLAL---QAEKSPPVLTQLLKC 125 (182)
T ss_pred HcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHH---hcccccHHHHHHHHH
Confidence 4567899999999999999977521 11 23444444443 234567788899999
Q ss_pred hHHHHhcCCCC----CChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhh
Q 000318 327 VKSCLLTDPSR----ADAPQILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1675)
Q Consensus 327 ~~~iL~~~p~~----~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~ 371 (1675)
...++.+-|+. .....++..+..++...|..||.++.-+++.+..
T Consensus 126 la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 126 LAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 98888888863 4456777888999999999999998888766543
No 155
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=44.18 E-value=1.2e+02 Score=38.67 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=34.2
Q ss_pred cccCceEEEecCCCCceEEEEEEEecCCC------CeeEEEccCCc---ceeee
Q 000318 1375 DLIGYRIKVWWPMDKQFYEGTIKSYDPIK------KKHVILYDDED---VEVLR 1419 (1675)
Q Consensus 1375 ~lvG~rv~V~Wp~D~~~Y~G~V~~y~~~~------~~H~v~YdDGd---~E~l~ 1419 (1675)
--||.+|.++|..|..||.++|....... ...-|.|..=+ .||+.
T Consensus 54 ~~VGekVla~~~~Dg~~~~A~VI~~R~~~~~~~~~~~YYVHY~g~nrRlDEWV~ 107 (450)
T PLN00104 54 LEVGTRVMCRWRFDGKYHPVKVIERRRGGSGGPNDYEYYVHYTEFNRRLDEWVK 107 (450)
T ss_pred eccCCEEEEEECCCCCEEEEEEEEEeccCCCCCCCceEEEEEecCCccHhhccC
Confidence 34999999999999999999999998632 35677775333 35654
No 156
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=43.59 E-value=13 Score=49.27 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=17.8
Q ss_pred CChhhHhHhHHHHHHHHHHhhhc
Q 000318 842 SSSVDKAHLRLASAKAVLRLSRQ 864 (1675)
Q Consensus 842 tp~~~ksrLRLaAa~sLLKLAr~ 864 (1675)
.|.+..--+|-.|.+.|+-|||.
T Consensus 752 ~P~t~aD~IRalAc~~L~GLaR~ 774 (1516)
T KOG1832|consen 752 NPPTTADCIRALACRVLLGLARD 774 (1516)
T ss_pred CCCCcHHHHHHHHHHHHhccccC
Confidence 35666777888888888888875
No 157
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.28 E-value=1.7e+02 Score=38.08 Aligned_cols=169 Identities=17% Similarity=0.145 Sum_probs=103.2
Q ss_pred hhcccccCCchHHHHHHHHHHHHhhcCCC---CCchhhc--HHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCC---
Q 000318 266 YLTGELLTDQLDTRLKAVGLVGDLFAVPG---SANNEQF--HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR--- 337 (1675)
Q Consensus 266 qLe~EL~sed~~~Rl~At~llG~mfs~~~---s~~a~~y--~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~--- 337 (1675)
.+-..+.+++.+.++.|+..+-+++|... .+.+-.. =+.+..||+| |..+.+|.+..=++.+|-.-....
T Consensus 70 ~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~--~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 70 LMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSR--DDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHcc--CCChhHHHHHHHHHHHHhcCchhhccc
Confidence 33344668999999999999999999753 1212111 3456778875 445677766655555654422211
Q ss_pred CChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCC----CCHHHHHHHHHh-hccCChhHHHHHHHHHHHHHHHHh
Q 000318 338 ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS----IPVETVKLVAER-LRDKSVLVKRYTMERLADIFRGCC 412 (1675)
Q Consensus 338 ~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~----Vs~elL~~laeR-~RDKK~~VRkeAm~~La~LY~~~~ 412 (1675)
-.....+..|...|..+++.||-+||-+++.+|-..... +.-..+..|..- ..+.+....+.++=+|.+|.+.-
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk- 226 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK- 226 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCC-
Confidence 011134567899999999999999999999998655331 222233333222 22333466667777777776641
Q ss_pred hhccCCCcchhccccchHHHhhhhccCCC
Q 000318 413 LRNFNGSINQNEFEWIPGKILRCLYDKDF 441 (1675)
Q Consensus 413 ~~~~~~~~~~~~~~wIP~~IL~~~Y~nd~ 441 (1675)
+.+.....+.-|=..|+.+.|..|.
T Consensus 227 ----~P~P~~~~v~~iLp~L~~ll~~~D~ 251 (514)
T KOG0166|consen 227 ----NPSPPFDVVAPILPALLRLLHSTDE 251 (514)
T ss_pred ----CCCCcHHHHHHHHHHHHHHHhcCCH
Confidence 1223335566666667777776664
No 158
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=42.28 E-value=1.1e+02 Score=40.88 Aligned_cols=97 Identities=18% Similarity=0.197 Sum_probs=49.3
Q ss_pred cccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHH-HHHHhHHHHhcCCCCCChHHHHHH
Q 000318 268 TGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMS-VLEHVKSCLLTDPSRADAPQILTA 346 (1675)
Q Consensus 268 e~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~-~Ve~~~~iL~~~p~~~~~~ei~~~ 346 (1675)
.+|=+.|.. .|=+|+-+---||+..+ ...++.++.+ .|++|-+|.. |...+....-+.. ..-|-.-
T Consensus 493 a~ETQHeki-~RGl~vGiaL~~ygrqe-----~Ad~lI~el~---~dkdpilR~~Gm~t~alAy~GTgn----nkair~l 559 (929)
T KOG2062|consen 493 AQETQHEKI-IRGLAVGIALVVYGRQE-----DADPLIKELL---RDKDPILRYGGMYTLALAYVGTGN----NKAIRRL 559 (929)
T ss_pred hhhhhHHHH-HHHHHHhHHHHHhhhhh-----hhHHHHHHHh---cCCchhhhhhhHHHHHHHHhccCc----hhhHHHh
Confidence 344444443 36666666555665543 2223333333 4667777765 3222222221110 1233344
Q ss_pred HHhhhCCchhHHHHHHHHHHHHhhhhhcCCC
Q 000318 347 LCDRLLDFDENVRKQVVAVICDVACHALNSI 377 (1675)
Q Consensus 347 L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V 377 (1675)
|.--..|.++.||.+||.+|+-+.+.+++.+
T Consensus 560 Lh~aVsD~nDDVrRaAVialGFVl~~dp~~~ 590 (929)
T KOG2062|consen 560 LHVAVSDVNDDVRRAAVIALGFVLFRDPEQL 590 (929)
T ss_pred hcccccccchHHHHHHHHHheeeEecChhhc
Confidence 4445667777777777777766666555443
No 159
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=39.64 E-value=17 Score=48.42 Aligned_cols=22 Identities=32% Similarity=0.241 Sum_probs=15.5
Q ss_pred hhcccccccCccccccCCCCCC
Q 000318 1179 REINLDNLGVLNKFESSNGHKH 1200 (1675)
Q Consensus 1179 ~~~~~~~~~~~~~~~~~~~~~~ 1200 (1675)
-||-+=|+-.-..-++-|+|-+
T Consensus 1123 Geik~~nv~sG~~e~s~ncH~S 1144 (1516)
T KOG1832|consen 1123 GEIKIFNVSSGSMEESVNCHQS 1144 (1516)
T ss_pred ceEEEEEccCcccccccccccc
Confidence 4666666767777788888843
No 160
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=39.42 E-value=3.9e+02 Score=36.90 Aligned_cols=194 Identities=19% Similarity=0.221 Sum_probs=116.0
Q ss_pred HHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhheeccCC--chHHHHHHHHHHHHhhcCCChhhHHHHHHHHH
Q 000318 98 LKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLE--CDELVNEMYSTFFAVASDDHPESVLSSMQTIM 175 (1675)
Q Consensus 98 LkdIF~l~v~qf~~L~d~~~p~f~q~~~LLE~LA~vks~vl~~DL~--~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL 175 (1675)
|..-|.+...-|.+-+|...|.|.---+.|+- | |+|+-+. ...+..+ + -+-+++......+|-
T Consensus 1036 L~~~~~f~~~vFs~sgd~g~~~f~~s~r~l~~-----S-v~~~~i~~~~~l~~LR----~-----~n~~~~~~~~vSdik 1100 (1525)
T COG5219 1036 LGENHHFVEKVFSLSGDLGLPSFRCSDRKLEQ-----S-VLLERIGPRAILYVLR----K-----HNVPPQFVASVSDIK 1100 (1525)
T ss_pred HhhhhhhhhhheecccccCccHHHHHHHHHHh-----h-HhhccCCchHHHHHHH----H-----ccCcHHHHHhhccch
Confidence 45555555566666666666666555555542 1 2223222 1111111 1 122445555556666
Q ss_pred HHHhcccccccHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHhhhhhHHHHHHHHHH---hhcCCCCCCCCcchHHHH
Q 000318 176 IVLLEESEDIQEDLLVILLSALGRNKND----TARRLAMNVIEQCAGKLEAGIKQFLVS---SMSGDSRPGHSHIDYHEV 248 (1675)
Q Consensus 176 ~~vI~Ese~vp~~vLd~IL~~l~~~~~~----~a~~lA~~v~~~~~dkL~~~I~qyf~~---il~~~~~~~~~~~~~h~L 248 (1675)
-.|.+-.+++..-+|..++-+|...++. +-++.-..++..|.-+.-+. |||.- +...+ ++
T Consensus 1101 d~IvEsndsmn~lLlkflFthfs~lrN~~~sr~~~q~l~k~~~~~p~k~ves--Qy~e~fp~~~N~~-----------d~ 1167 (1525)
T COG5219 1101 DCIVESNDSMNYLLLKFLFTHFSYLRNEALSRAVSQLLLKCRKGFPIKFVES--QYFEGFPEFPNAD-----------DE 1167 (1525)
T ss_pred hhhhhcchHHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHhCCCchhhhh--hhhhcCcccCCch-----------hH
Confidence 6666666789999999888888654433 33455555555555443333 55431 11111 11
Q ss_pred HHHHHhhcchhhhhhhhhhcccccCCch--HHHH-----------HHHHHHHHhhcCCCCCc------------hhhcHH
Q 000318 249 IYDVYRCSPQILSGVVPYLTGELLTDQL--DTRL-----------KAVGLVGDLFAVPGSAN------------NEQFHS 303 (1675)
Q Consensus 249 i~eL~~~~P~lL~~ViPqLe~EL~sed~--~~Rl-----------~At~llG~mfs~~~s~~------------a~~y~~ 303 (1675)
++++..|..|-..|++|+. .+|+ +..+.|.+||--||--+ ...|=.
T Consensus 1168 ---------qmesv~mk~LreKls~d~~El~l~~~~~s~y~~d~Sl~~~~v~~~i~~Pgd~l~~v~k~ey~e~~~~vYL~ 1238 (1525)
T COG5219 1168 ---------QMESVCMKFLREKLSADDNELLLMLLAKSNYRNDRSLDMKGVVRMIERPGDHLLSVKKEEYRERHTIVYLP 1238 (1525)
T ss_pred ---------HHHHHHHHHHHHhhhhhhHHHHHHHHHHhCCCcccccCHhHHHHHhccccchhhhcCHHHHHHHhhHHHHH
Confidence 5566666777777776655 4444 44678999999887433 124778
Q ss_pred HHHHHHhcccCCChhHHHHHHHHhH
Q 000318 304 VFSEFLKRLTDRIVAVRMSVLEHVK 328 (1675)
Q Consensus 304 lw~~fL~R~~D~s~~VR~~~Ve~~~ 328 (1675)
+|+--++-|.|.+-.+|..++++..
T Consensus 1239 ~w~lI~~hf~dT~yNm~~siI~qL~ 1263 (1525)
T COG5219 1239 LWRLIYGHFADTVYNMYSSIISQLD 1263 (1525)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 8999999999999999999998865
No 161
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=39.22 E-value=9.6e+02 Score=30.90 Aligned_cols=64 Identities=16% Similarity=0.095 Sum_probs=39.9
Q ss_pred CCCcchhHHHHHHHHHHhhhcCCC-CCCChhHH---HHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhh
Q 000318 67 HQDKDVKLLVATCICEITRITAPE-APYSDDVL---KDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYR 134 (1675)
Q Consensus 67 HkD~~Vr~~vAcCLadIlRI~APd-APytd~qL---kdIF~l~v~qf~~L~d~~~p~f~q~~~LLE~LA~vk 134 (1675)
-...++..|+-.-|.|+++- .|. +++--+.. .++|.-|+..|. ..+.+-....+++|..+....
T Consensus 65 ~~~~d~vqyvL~Li~dll~~-~~~~~~~f~~~~~~~~~~~~~fl~lL~---~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 65 IDKDDTVRYVLTLIDDMLQE-DDTRVKLFHDDALLKKKTWEPFFNLLN---RQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred cCcHHHHHHHHHHHHHHHHh-chHHHHHHHHHhhccccchHHHHHHHc---CCchhHHHHHHHHHHHHHhcC
Confidence 35577999999999999997 222 11111111 456777777543 345555666777777776543
No 162
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=38.82 E-value=3.2e+02 Score=33.91 Aligned_cols=96 Identities=16% Similarity=0.145 Sum_probs=64.2
Q ss_pred cccCCchHHHHHHHHHHHHhhcCCC-C--Cchh--hcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHH-
Q 000318 270 ELLTDQLDTRLKAVGLVGDLFAVPG-S--ANNE--QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQI- 343 (1675)
Q Consensus 270 EL~sed~~~Rl~At~llG~mfs~~~-s--~~a~--~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei- 343 (1675)
.|.+.+..+|..|+.+||.++.... + .+.. .-+.+...+- .|.+..+|.+.+=++...|.+++.+ ..+.
T Consensus 132 ~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls---~~~~~~~r~kaL~AissLIRn~~~g--~~~fl 206 (342)
T KOG2160|consen 132 YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILS---SDDPNTVRTKALFAISSLIRNNKPG--QDEFL 206 (342)
T ss_pred HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHc---cCCCchHHHHHHHHHHHHHhcCcHH--HHHHH
Confidence 6778999999999999999998642 1 0111 1234444443 6778889999999999989888753 1122
Q ss_pred ----HHHHHhhhCCchhHHHHH--HHHHHHHhh
Q 000318 344 ----LTALCDRLLDFDENVRKQ--VVAVICDVA 370 (1675)
Q Consensus 344 ----~~~L~~rL~D~DEkVR~a--aV~ai~~la 370 (1675)
+..|.+.|...+..||.. |+--|..+.
T Consensus 207 ~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll 239 (342)
T KOG2160|consen 207 KLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLL 239 (342)
T ss_pred hcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence 357888888865666655 333344433
No 163
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.56 E-value=1.3e+03 Score=32.40 Aligned_cols=113 Identities=15% Similarity=0.161 Sum_probs=72.1
Q ss_pred HHHHHHhhcc--hhhhh-hhhhhcccccCCchHHHHHHHHHHHHhhcCC---CCCchhhcHHHHHHHHhcccCCChhHHH
Q 000318 248 VIYDVYRCSP--QILSG-VVPYLTGELLTDQLDTRLKAVGLVGDLFAVP---GSANNEQFHSVFSEFLKRLTDRIVAVRM 321 (1675)
Q Consensus 248 Li~eL~~~~P--~lL~~-ViPqLe~EL~sed~~~Rl~At~llG~mfs~~---~s~~a~~y~~lw~~fL~R~~D~s~~VR~ 321 (1675)
|..-|-+-+| +.+-. +.+++-.++++.---+|..|.-+++..=+.. ..++.+.+..+.++++. |.+-+||+
T Consensus 445 l~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~---d~~lPV~V 521 (1010)
T KOG1991|consen 445 LASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLN---DNELPVRV 521 (1010)
T ss_pred HHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcc---CCcCchhh
Confidence 3444445577 44333 4455555678888999999999999654221 24677888888888876 89999999
Q ss_pred HHHHHhHHHHhcCCCC-----CChHHHHHHHHhhhCCchhHHHHHHH
Q 000318 322 SVLEHVKSCLLTDPSR-----ADAPQILTALCDRLLDFDENVRKQVV 363 (1675)
Q Consensus 322 ~~Ve~~~~iL~~~p~~-----~~~~ei~~~L~~rL~D~DEkVR~aaV 363 (1675)
+.+-+...++.+.+.. ...+.+.+.|..-.++++-.+=..+.
T Consensus 522 eAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vm 568 (1010)
T KOG1991|consen 522 EAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVM 568 (1010)
T ss_pred HHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHH
Confidence 9999988877776532 12234444444444444444433333
No 164
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=38.37 E-value=1.8e+03 Score=33.75 Aligned_cols=157 Identities=10% Similarity=0.124 Sum_probs=81.8
Q ss_pred hHHhHHHHHHHhch--hhhhcC----CCcchhHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChh
Q 000318 48 ILEAMQPFLNAIVQ--PVLLKH----QDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFG 121 (1675)
Q Consensus 48 ~~~sl~~~~~~Lv~--~~LL~H----kD~~Vr~~vAcCLadIlRI~APdAPytd~qLkdIF~l~v~qf~~L~d~~~p~f~ 121 (1675)
+.+++..+..+|.. ..=|.. .---++.+|-.|...+-||-- +-..|+..+-.-|-..+-..+. .
T Consensus 1083 ~~eai~~fv~AL~~vS~eEl~~~~~pr~FsLqKLveIa~~Nm~Rirl--------~W~~iW~~l~~hf~~vg~~~n~--~ 1152 (1780)
T PLN03076 1083 NSEAIIDFVKALCKVSMEELRSPSDPRVFSLTKIVEIAHYNMNRIRL--------VWSSIWHVLSDFFVTIGCSENL--S 1152 (1780)
T ss_pred CHHHHHHHHHHHHHhhHHHHccCCCCchhHHHHHHHHHHhcccchhe--------ehHhHHHHHHHHHHHhcCCcch--h
Confidence 44677777777743 333322 223356667777777777654 2235555555555443322222 2
Q ss_pred hHHHHHHHHHhhhh-hheeccCCc---hHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhccc-ccccHHHHHHHHHH
Q 000318 122 RRVVILETLAKYRS-CVVMLDLEC---DELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEES-EDIQEDLLVILLSA 196 (1675)
Q Consensus 122 q~~~LLE~LA~vks-~vl~~DL~~---~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~Es-e~vp~~vLd~IL~~ 196 (1675)
-.+|.|.+|-.+-. |.-.-+|+. +.-+..=|..++. ......|...++..+.++|... +.|-. =++.||.-
T Consensus 1153 va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~---~s~~~eVrE~ILeCv~qmI~s~~~nIkS-GWktIF~V 1228 (1780)
T PLN03076 1153 IAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMR---KSNAVEIRELIIRCVSQMVLSRVNNVKS-GWKSMFMV 1228 (1780)
T ss_pred HHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHH---hcCchHHHHHHHHHHHHHHHHHHhhhhc-CcHHHHHH
Confidence 46777777654321 112233331 2233344444443 3334467777777777766663 33433 36666665
Q ss_pred hc---CCCc----HHHHHHHHHHHHHhhh
Q 000318 197 LG---RNKN----DTARRLAMNVIEQCAG 218 (1675)
Q Consensus 197 l~---~~~~----~~a~~lA~~v~~~~~d 218 (1675)
|. ..+. ..||+....|+.....
T Consensus 1229 Ls~aa~d~~e~iV~lAFetl~~I~~d~f~ 1257 (1780)
T PLN03076 1229 FTTAAYDDHKNIVLLAFEIIEKIIREYFP 1257 (1780)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHHhhhh
Confidence 53 1111 1688888877766554
No 165
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=37.27 E-value=7.5e+02 Score=29.92 Aligned_cols=147 Identities=24% Similarity=0.279 Sum_probs=79.4
Q ss_pred HHHHHHHHHhhcchhhhhhhhhhccccc--CCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhccc-CCChhHHH
Q 000318 245 YHEVIYDVYRCSPQILSGVVPYLTGELL--TDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLT-DRIVAVRM 321 (1675)
Q Consensus 245 ~h~Li~eL~~~~P~lL~~ViPqLe~EL~--sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~-D~s~~VR~ 321 (1675)
.|++.|-|-+-.= ...+|.|..-|. +.++-+|..|-+.||.++ .+. -..+|.|.. |...+||-
T Consensus 53 khe~ay~LgQ~~~---~~Av~~l~~vl~desq~pmvRhEAaealga~~-~~~----------~~~~l~k~~~dp~~~v~E 118 (289)
T KOG0567|consen 53 KHELAYVLGQMQD---EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DPE----------SLEILTKYIKDPCKEVRE 118 (289)
T ss_pred ccchhhhhhhhcc---chhhHHHHHHhcccccchHHHHHHHHHHHhhc-chh----------hHHHHHHHhcCCccccch
Confidence 4666665543311 122333333333 457899999999999888 543 234555555 66666665
Q ss_pred HHHHHhHHH---------Hhc------CCCCC-Ch--------------------------------HHHHHHHHhhhCC
Q 000318 322 SVLEHVKSC---------LLT------DPSRA-DA--------------------------------PQILTALCDRLLD 353 (1675)
Q Consensus 322 ~~Ve~~~~i---------L~~------~p~~~-~~--------------------------------~ei~~~L~~rL~D 353 (1675)
.|-.+++++ ..+ +|... .. .+-+.+|.+-|.|
T Consensus 119 Tc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~ 198 (289)
T KOG0567|consen 119 TCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLAD 198 (289)
T ss_pred HHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhccc
Confidence 443333321 111 12111 00 1222334444444
Q ss_pred chhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCC--hhHHHHHHHHHHHHHHHHh
Q 000318 354 FDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKS--VLVKRYTMERLADIFRGCC 412 (1675)
Q Consensus 354 ~DEkVR~aaV~ai~~la~~~l~~Vs~elL~~laeR~RDKK--~~VRkeAm~~La~LY~~~~ 412 (1675)
.-.-.|..|--+++++ -+...+-.+.+.++|.+ +=||.+|...||.+=...|
T Consensus 199 ~SalfrhEvAfVfGQl-------~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~~ 252 (289)
T KOG0567|consen 199 DSALFRHEVAFVFGQL-------QSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADEDC 252 (289)
T ss_pred chHHHHHHHHHHHhhc-------cchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHHH
Confidence 4444444443333332 13334556778888887 6799999999998876654
No 166
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=36.60 E-value=72 Score=44.05 Aligned_cols=15 Identities=20% Similarity=0.029 Sum_probs=9.3
Q ss_pred chhhhHHHHhHhcCC
Q 000318 957 PEYIIPYLVHTFAHH 971 (1675)
Q Consensus 957 pEy~LprLIHLLAHH 971 (1675)
-||+|+-+.--=.|.
T Consensus 1214 ~e~iF~~fn~de~hN 1228 (3015)
T KOG0943|consen 1214 EEDIFMGFNCDEGHN 1228 (3015)
T ss_pred hhhhccccccCCCCC
Confidence 367776666555665
No 167
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=36.27 E-value=1.4e+03 Score=31.77 Aligned_cols=141 Identities=21% Similarity=0.214 Sum_probs=104.2
Q ss_pred hhhhhhhcccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhc-CCCCCC
Q 000318 261 SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT-DPSRAD 339 (1675)
Q Consensus 261 ~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~-~p~~~~ 339 (1675)
..|+|.+.+-+.-+...+|..|+..++.++..-..+. ..+......++.-..|.+..||-...+..-.+... -|+. .
T Consensus 275 s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~-d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~-~ 352 (759)
T KOG0211|consen 275 SEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD-DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSA-T 352 (759)
T ss_pred hhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcccc-C
Confidence 3467777776777789999999999998887643332 77788889999999999999998877766553322 1222 1
Q ss_pred hHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhc----CCCCH-HHHHHHHHhhccCChhHHHHHHHH
Q 000318 340 APQILTALCDRLLDFDENVRKQVVAVICDVACHAL----NSIPV-ETVKLVAERLRDKSVLVKRYTMER 403 (1675)
Q Consensus 340 ~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l----~~Vs~-elL~~laeR~RDKK~~VRkeAm~~ 403 (1675)
..+....+..-+.|..+.||.++..-+..+++..- -.++. .+|-.+-.-+-|....||......
T Consensus 353 ~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~ 421 (759)
T KOG0211|consen 353 RTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASV 421 (759)
T ss_pred cccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhcc
Confidence 23678888899999999999998888888776221 33333 456788888999999999865433
No 168
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.93 E-value=1.3e+02 Score=39.94 Aligned_cols=120 Identities=22% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHhh------cchhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhH
Q 000318 246 HEVIYDVYRC------SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAV 319 (1675)
Q Consensus 246 h~Li~eL~~~------~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~V 319 (1675)
|.+++|.-.. .|+++...+-+|-.-|.+-+..+|-+|.+.+.+|.+...+.=+-.|. .=.-+..=..+++++|
T Consensus 307 naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h-~d~Ii~sLkterDvSi 385 (938)
T KOG1077|consen 307 NAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH-QDTIINSLKTERDVSI 385 (938)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH-HHHHHHHhccccchHH
Q ss_pred HHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhh
Q 000318 320 RMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVA 370 (1675)
Q Consensus 320 R~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la 370 (1675)
|...|+. |-.-.++.-+.+|+..|..-|.-.|-.+|-+.|--+.=+|
T Consensus 386 rrravDL----LY~mcD~~Nak~IV~elLqYL~tAd~sireeivlKvAILa 432 (938)
T KOG1077|consen 386 RRRAVDL----LYAMCDVSNAKQIVAELLQYLETADYSIREEIVLKVAILA 432 (938)
T ss_pred HHHHHHH----HHHHhchhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
No 169
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.86 E-value=92 Score=40.98 Aligned_cols=54 Identities=11% Similarity=0.023 Sum_probs=46.3
Q ss_pred HHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhh
Q 000318 320 RMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA 373 (1675)
Q Consensus 320 R~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~ 373 (1675)
=..+|+||-.++...|+......|+.++-..+.|+..-||...|++|..+....
T Consensus 302 ~~vav~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~D 355 (704)
T KOG2153|consen 302 AQVAVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFEND 355 (704)
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcCC
Confidence 346889999999999887777899999999999999999999999998776533
No 170
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.21 E-value=7.9e+02 Score=32.02 Aligned_cols=251 Identities=13% Similarity=0.067 Sum_probs=0.0
Q ss_pred cccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcC--CCCCChHHHHHHH
Q 000318 270 ELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD--PSRADAPQILTAL 347 (1675)
Q Consensus 270 EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~--p~~~~~~ei~~~L 347 (1675)
++.+++.--|..+|++=..|--..+.++.. +-..++.-..--.+.=|+..+-++..+.... +++..-..+...+
T Consensus 188 ~qls~~~~h~~g~trlqr~m~~~~~~~~~~----il~q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~l 263 (533)
T KOG2032|consen 188 SQLSDNDIHRVGLTRLQRFMACVQDLEMGK----ILAQLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSL 263 (533)
T ss_pred hhcccCcccHHHHHHHHHHHHhhCCccHHH----HHhhcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHH
Q ss_pred HhhhCCchhHHHHHHHHHHHHhhhhhcCCC----CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCcchh
Q 000318 348 CDRLLDFDENVRKQVVAVICDVACHALNSI----PVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQN 423 (1675)
Q Consensus 348 ~~rL~D~DEkVR~aaV~ai~~la~~~l~~V----s~elL~~laeR~RDKK~~VRkeAm~~La~LY~~~~~~~~~~~~~~~ 423 (1675)
..|..||+.++|..|+..++.++...++.| +.-+...+....-|=+..|-.+||.+|..+-... .+.....
T Consensus 264 a~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~-----~~~~l~~ 338 (533)
T KOG2032|consen 264 ANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA-----SNDDLES 338 (533)
T ss_pred HHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh-----hhcchhh
Q ss_pred ccccchHHHhhhhccCCCCchhHHHHhhccCcCCCCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--
Q 000318 424 EFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSV---------KDRVRHWVRIFSGFDRIEMKALEKILEQKQR-- 492 (1675)
Q Consensus 424 ~~~wIP~~IL~~~Y~nd~~~~lVE~vL~e~LlP~~~~~---------~~R~~~ll~l~~~LD~~~~kal~~il~~k~~-- 492 (1675)
-|--|--++-..+-..+..-+.--.++|+.|.|+.--. ..|-..++-...+..+.--+|+...+..-.-
T Consensus 339 ~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l 418 (533)
T KOG2032|consen 339 YLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNL 418 (533)
T ss_pred hchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchh
Q ss_pred HHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCC
Q 000318 493 LQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAE 532 (1675)
Q Consensus 493 l~~~~~~~l~l~~~~~~~d~~ei~~kL~~~i~~Ls~~fPD 532 (1675)
.+.+...|++-.. +++-+.++.=.+..+..+...+||
T Consensus 419 ~rke~~~~~q~~l---d~~~~~~q~Fyn~~c~~L~~i~~d 455 (533)
T KOG2032|consen 419 VRKELYHLFQESL---DTDMARFQAFYNQWCIQLNHIHPD 455 (533)
T ss_pred HHHHHHHHHhhhh---HHhHHHHHHHHHHHHHHHhhhCHH
No 171
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=34.65 E-value=1.8e+02 Score=35.55 Aligned_cols=87 Identities=18% Similarity=0.221 Sum_probs=66.6
Q ss_pred HHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhh-CCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHH
Q 000318 319 VRMSVLEHVKSCLLTDPSRADAPQILTALCDRL-LDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVK 397 (1675)
Q Consensus 319 VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL-~D~DEkVR~aaV~ai~~la~~~l~~Vs~elL~~laeR~RDKK~~VR 397 (1675)
=|+.+++....+ |.......|++.|..-+ .+..|.+..+.+.+++.-....-..+|..++..+..=+.|||+.||
T Consensus 3 ~r~~~~~~L~~l----~~~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR 78 (339)
T PF12074_consen 3 QRVLHASMLSSL----PSSSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVR 78 (339)
T ss_pred HHHHHHHHHHhC----CCcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHH
Confidence 355555554432 22235678888888776 4699999999999997643333378899999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 000318 398 RYTMERLADIFR 409 (1675)
Q Consensus 398 keAm~~La~LY~ 409 (1675)
+.-+..++.++.
T Consensus 79 ~~w~~~~~~~~~ 90 (339)
T PF12074_consen 79 RAWLLCLGEALW 90 (339)
T ss_pred HHHHHHHHHHHh
Confidence 999999999877
No 172
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=34.57 E-value=3.1e+02 Score=36.73 Aligned_cols=148 Identities=15% Similarity=0.132 Sum_probs=96.2
Q ss_pred cchhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCC
Q 000318 256 SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDP 335 (1675)
Q Consensus 256 ~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p 335 (1675)
.++.-..++|.|-.-+.+.|..+|+.-.+-+-+....-. =-.-...+|-.+..=|+|.++.||..-|++...+.-.-.
T Consensus 324 ~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt--~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~ 401 (690)
T KOG1243|consen 324 EEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLT--KQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS 401 (690)
T ss_pred ccccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcC--HHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc
Confidence 444667788898888999999999887666554443211 012345688899999999999999999988765443222
Q ss_pred CCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHh-hccCChhHHHHHHHHHH
Q 000318 336 SRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAER-LRDKSVLVKRYTMERLA 405 (1675)
Q Consensus 336 ~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~Vs~elL~~laeR-~RDKK~~VRkeAm~~La 405 (1675)
.+..-.|++++|.+.-.|.+-.+|..++..++.++...--.+-..+|-.---| +||-=..=|..++..|+
T Consensus 402 ~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~ 472 (690)
T KOG1243|consen 402 KRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALA 472 (690)
T ss_pred hhhhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHh
Confidence 22345689999999888999999999877777766542111111122111223 45555555555544443
No 173
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=34.52 E-value=1.1e+03 Score=30.09 Aligned_cols=90 Identities=11% Similarity=0.168 Sum_probs=51.1
Q ss_pred hHHHHhhccCcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--CCcHHH----H
Q 000318 445 TIESVLCGSLFPTGFS--VKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQD--GDAPEI----Q 516 (1675)
Q Consensus 445 lVE~vL~e~LlP~~~~--~~~R~~~ll~l~~~LD~~~~kal~~il~~k~~l~~~~~~~l~l~~~~~~--~d~~ei----~ 516 (1675)
.|+.+ ++.++|..++ +++|--.++..+..+.... .+-. .++-+...+++...|.. ...+++ .
T Consensus 237 f~~y~-n~~~ip~~fdkl~e~rkL~lLK~lAEMss~t-----taq~----a~q~Lpsi~elLk~yMpa~kt~ee~~fsyv 306 (460)
T KOG2213|consen 237 FVEYL-NKHIIPHHFDKLTEERKLDLLKALAEMSSYT-----TAQA----ARQMLPSIVELLKEYMPAPKTGEEMQFSYV 306 (460)
T ss_pred HHHHH-HhhhcccccccchHHHHHHHHHHHHHhCccc-----hHHH----HHHHHHHHHHHHHHhcccCCccHHHHHHHH
Confidence 44444 7788887544 5677777777666554432 1111 22223334444333321 122333 3
Q ss_pred HHHHHHHHHHHhhcCCchHHHHHHHHHH
Q 000318 517 KKILFCFRVMSRSFAEPAKAEENFLILD 544 (1675)
Q Consensus 517 ~kL~~~i~~Ls~~fPDp~Ka~e~L~kf~ 544 (1675)
..+....++|....||.+++..+-+++.
T Consensus 307 EClly~~h~Lg~k~pn~t~ak~d~K~L~ 334 (460)
T KOG2213|consen 307 ECLLYALHHLGHKKPNFTNAKCDAKKLK 334 (460)
T ss_pred HHHHHHHHHHhhcCcchhhhhcchhhhc
Confidence 3566677888888999999887766664
No 174
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=34.32 E-value=2.8e+02 Score=34.19 Aligned_cols=137 Identities=20% Similarity=0.297 Sum_probs=0.0
Q ss_pred hhhhcccccCCchHHHHHHHHHHHHhhcCCCCC-----chhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcC-CCC
Q 000318 264 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA-----NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD-PSR 337 (1675)
Q Consensus 264 iPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~-----~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~-p~~ 337 (1675)
+|+|...|-++|.+.-+.||--+-+++|...+. +..---+-|-+|+. ++--.|+++-..-.++| .++
T Consensus 73 lp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~-------~~q~~mlqfEAaWalTNiaSG 145 (526)
T COG5064 73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMD-------EIQRDMLQFEAAWALTNIASG 145 (526)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHH-------hcchhHHHHHHHHHHhhhccC
Q ss_pred CChH-------HHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcC---------------------CCCHHHHH----HH
Q 000318 338 ADAP-------QILTALCDRLLDFDENVRKQVVAVICDVACHALN---------------------SIPVETVK----LV 385 (1675)
Q Consensus 338 ~~~~-------ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~---------------------~Vs~elL~----~l 385 (1675)
.-.+ .-+..+...|.++...||-++|=+++.+|-.+.. .+..++++ +|
T Consensus 146 tt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtL 225 (526)
T COG5064 146 TTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTL 225 (526)
T ss_pred cccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHH
Q ss_pred HHhhccCCh----hHHHHHHHHHHHH
Q 000318 386 AERLRDKSV----LVKRYTMERLADI 407 (1675)
Q Consensus 386 aeR~RDKK~----~VRkeAm~~La~L 407 (1675)
...+|-|++ .+=..|+..|++|
T Consensus 226 SNlcRGknP~P~w~~isqalpiL~KL 251 (526)
T COG5064 226 SNLCRGKNPPPDWSNISQALPILAKL 251 (526)
T ss_pred HHhhCCCCCCCchHHHHHHHHHHHHH
No 175
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=33.43 E-value=2.7e+02 Score=34.12 Aligned_cols=123 Identities=20% Similarity=0.268 Sum_probs=83.0
Q ss_pred HHHHHHHHhhcCC-CCCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCCh--------HHHHHHHHhhh
Q 000318 281 KAVGLVGDLFAVP-GSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADA--------PQILTALCDRL 351 (1675)
Q Consensus 281 ~At~llG~mfs~~-~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~--------~ei~~~L~~rL 351 (1675)
+.|..|-|+|... |..++..|....+.=| ..| +..|.+..++.++-||.+. +.... .+|.+.+..++
T Consensus 62 lcVscLERLfkakegahlapnlmpdLQrGL--iad-dasVKiLackqigcilEdc-DtnaVseillvvNaeilklildcI 137 (524)
T KOG4413|consen 62 LCVSCLERLFKAKEGAHLAPNLMPDLQRGL--IAD-DASVKILACKQIGCILEDC-DTNAVSEILLVVNAEILKLILDCI 137 (524)
T ss_pred hHHHHHHHHHhhccchhhchhhhHHHHhcc--cCC-cchhhhhhHhhhhHHHhcC-chhhHHHHHHHhhhhHHHHHHHHH
Confidence 3888899999865 5667777766665443 334 6778888888887766543 32222 25667888899
Q ss_pred CCchhHHHHHHHHHHHHhhhh--hcCCC-CHH-----HHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000318 352 LDFDENVRKQVVAVICDVACH--ALNSI-PVE-----TVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1675)
Q Consensus 352 ~D~DEkVR~aaV~ai~~la~~--~l~~V-s~e-----lL~~laeR~RDKK~~VRkeAm~~La~LY~~ 410 (1675)
.-.|+.|-.+|++.|..++.+ .++.+ +.+ -+..++.|+-| -+|....+.+-+||..
T Consensus 138 ggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcnd---iaRvRVleLIieifSi 201 (524)
T KOG4413|consen 138 GGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCND---IARVRVLELIIEIFSI 201 (524)
T ss_pred cCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhh---HHHHHHHHHHHHHHhc
Confidence 999999999999999988752 23322 222 34567777754 4566666666666664
No 176
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=33.35 E-value=8e+02 Score=33.98 Aligned_cols=183 Identities=14% Similarity=0.081 Sum_probs=104.0
Q ss_pred HHhhhccccChhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcC-cc-ccHHHHHHHHhhccccchHhHHHHHH
Q 000318 593 SMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLL-LG-GTEEELVNLLKEENEIIKEGILHVLA 670 (1675)
Q Consensus 593 l~R~S~li~Nks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~l-Fk-~~v~~Li~lL~~~~~~~~~~aLkiLa 670 (1675)
+-|++-+.++--.||.|+..+..- +-...++-+++-|..||+.+|.- ++ +.+...+.+|.-=...+...||-|.+
T Consensus 243 lP~S~a~vV~~~aIPvl~~kL~~I---eyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~Alaiaa 319 (1051)
T KOG0168|consen 243 LPRSSAIVVDEHAIPVLLEKLLTI---EYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAA 319 (1051)
T ss_pred ccchhheeecccchHHHHHhhhhh---hhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447777788877888888876421 11124566788899999999853 22 22222222222111124467888888
Q ss_pred HhhcchhhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCcc--c-----hHHHHHHHHHHhhhhc--C-CCc
Q 000318 671 KAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGL--K-----SLSVLYKRLVDMLEEK--T-HLP 740 (1675)
Q Consensus 671 k~~k~~~e~~~~~~s~l~~~L~~lal~GtpkqAKyAvr~Laa~~~~~~~--~-----~~~~L~~~L~~~L~~~--~-~l~ 740 (1675)
++.+.++..-+..--...+.|..+-.+-+.+-.-++.-|++.+...... . +-.+|++++..-|.-. . ..+
T Consensus 320 N~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~ 399 (1051)
T KOG0168|consen 320 NCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNG 399 (1051)
T ss_pred HHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCccccccc
Confidence 8888765432211123467788887888877777888888777654321 1 1123444444443211 1 222
Q ss_pred hH---HHHHHHHHhhcccccccchHHHHHHHHHhhhcccCc
Q 000318 741 AV---LQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNK 778 (1675)
Q Consensus 741 t~---L~sLg~Iaq~aP~vfe~~~~eI~~fIik~ILl~~~~ 778 (1675)
++ +--|..++--.|..|.+....=+..+++.||.....
T Consensus 400 ~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~ 440 (1051)
T KOG0168|consen 400 TYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSK 440 (1051)
T ss_pred chhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCc
Confidence 32 333334444468888876544345567888877654
No 177
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=32.90 E-value=83 Score=29.27 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=29.5
Q ss_pred HHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCchhHHHHH
Q 000318 322 SVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQ 361 (1675)
Q Consensus 322 ~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~a 361 (1675)
.+|+.++.|.-.|+ ..+|...|.++-+||||.|-.-
T Consensus 7 k~VQ~iKEiv~~hs----e~eIya~L~ecnMDpnea~qrL 42 (60)
T PF06972_consen 7 KTVQSIKEIVGCHS----EEEIYAMLKECNMDPNEAVQRL 42 (60)
T ss_pred HHHHHHHHHhcCCC----HHHHHHHHHHhCCCHHHHHHHH
Confidence 57889999887754 2589999999999999987553
No 178
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=32.86 E-value=1.8e+02 Score=34.68 Aligned_cols=135 Identities=14% Similarity=0.150 Sum_probs=72.7
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhC
Q 000318 273 TDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLL 352 (1675)
Q Consensus 273 sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~ 352 (1675)
++|+.++..|+-++|..-+.+...-.-..-..-.-..+-.+|.++.||...+.+..++=.+......++.-+..+++...
T Consensus 24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~ 103 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETV 103 (254)
T ss_pred CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHh
Confidence 67899999999999986554321111111112233566778899999987777765432221111122233444454433
Q ss_pred C--chhHHHHHHHHHHHHhhhhh-cCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000318 353 D--FDENVRKQVVAVICDVACHA-LNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1675)
Q Consensus 353 D--~DEkVR~aaV~ai~~la~~~-l~~Vs~elL~~laeR~RDKK~~VRkeAm~~La~L 407 (1675)
. .|..|..++.+++..++... .+.+=...+..+...+.-=...+|..++..|..|
T Consensus 104 s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 104 SSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred cCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 2 36778888888888876432 1111111222222222222456777777766554
No 179
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=32.80 E-value=7.2e+02 Score=33.00 Aligned_cols=123 Identities=8% Similarity=0.139 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHhhhccCCCcchhccccchHHHhhhhccCCCC------chhHHHHhhccCcCCCCCHHHHHHHHHHHH
Q 000318 399 YTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFG------SDTIESVLCGSLFPTGFSVKDRVRHWVRIF 472 (1675)
Q Consensus 399 eAm~~La~LY~~~~~~~~~~~~~~~~~~wIP~~IL~~~Y~nd~~------~~lVE~vL~e~LlP~~~~~~~R~~~ll~l~ 472 (1675)
+|--.+..+|+.+..- .+ -..|+.-||.+.+. ...++.|+.+ .++.|.-.+-++.
T Consensus 246 eaa~Vve~ay~~~A~l-------~Q-----r~~li~EfYG~efqlfK~sn~~Tl~kil~~-------~pekk~~I~~~l~ 306 (652)
T KOG2050|consen 246 EAAYVVEYAYNDFATL-------EQ-----RQYLIQEFYGDEFQLFKDSNDKTLDKILAE-------APEKKASILRHLK 306 (652)
T ss_pred HHHHHHHHHHHhhccH-------HH-----HHHHHHHHhhHHHHHHhccCcccHHHHHHh-------ChHhHHHHHHHHH
Confidence 5566677777765321 01 12334445544322 2367777664 5577877777888
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhh--cCCchHHHHHHHHHHhhccHH
Q 000318 473 SGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRS--FAEPAKAEENFLILDQLKDAN 550 (1675)
Q Consensus 473 ~~LD~~~~kal~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kL~~~i~~Ls~~--fPDp~Ka~e~L~kf~klnD~R 550 (1675)
..+++..-|....+ .-+-.+|..||..|. +.+...-|+.....+..+ -||..++.=.+-.++..+|++
T Consensus 307 ~~I~~v~eKg~v~~----tivHk~mlEy~~~ad------e~e~~e~l~ll~elv~e~vHT~dGS~vAm~li~~a~aKeRK 376 (652)
T KOG2050|consen 307 AIITPVAEKGSVDH----TIVHKLMLEYLTIAD------EEEKSELLELLKELVPEMVHTRDGSRVAMKLIWHATAKERK 376 (652)
T ss_pred HHhHHHhhcchhHH----HHHHHHHHHHHHhCC------HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhCCHHHHH
Confidence 88877666554443 446778999998863 333433444433444433 356655533333334456654
No 180
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=32.76 E-value=1.2e+02 Score=32.87 Aligned_cols=71 Identities=15% Similarity=0.229 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccH------HHHHHHHhh-ccccchHhHHHHHHHhhcc
Q 000318 603 KEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE------EELVNLLKE-ENEIIKEGILHVLAKAGGT 675 (1675)
Q Consensus 603 ks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v------~~Li~lL~~-~~~~~~~~aLkiLak~~k~ 675 (1675)
+..+..|.+++.. +|....-.|+.||..+.+.|...|...+ ++|++++.. .++.+...+|..+..|+..
T Consensus 36 k~a~ral~KRl~~----~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 36 KDCLKAIMKRLNH----KDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 3444455554421 2222334567777777777777776553 667777776 3445777888888888755
Q ss_pred hh
Q 000318 676 IR 677 (1675)
Q Consensus 676 ~~ 677 (1675)
++
T Consensus 112 f~ 113 (144)
T cd03568 112 FK 113 (144)
T ss_pred hC
Confidence 43
No 181
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=32.38 E-value=8.5e+02 Score=31.60 Aligned_cols=162 Identities=12% Similarity=0.158 Sum_probs=93.1
Q ss_pred hhHHHHHHHHHHHHhcccccccH----HHHHHHHHHhcCCCcH----HHHHHHHHHHHHhhhhhHHHH----HHHHHHhh
Q 000318 165 ESVLSSMQTIMIVLLEESEDIQE----DLLVILLSALGRNKND----TARRLAMNVIEQCAGKLEAGI----KQFLVSSM 232 (1675)
Q Consensus 165 ~~V~~~m~~IL~~vI~Ese~vp~----~vLd~IL~~l~~~~~~----~a~~lA~~v~~~~~dkL~~~I----~qyf~~il 232 (1675)
..-...|..|+.-+-+.+.+|.. ++|..+|.-+...+.. -|.++-..+|...+++|..+. +.++-..-
T Consensus 302 ~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ 381 (516)
T KOG2956|consen 302 SERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAK 381 (516)
T ss_pred hHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHh
Confidence 44566788888888888888988 4555555666553332 666666777777777765543 33332211
Q ss_pred cCCCCCCCCcchHHHHHHHHHhhcchhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCCCC-CchhhcHHHHHHHHhc
Q 000318 233 SGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGS-ANNEQFHSVFSEFLKR 311 (1675)
Q Consensus 233 ~~~~~~~~~~~~~h~Li~eL~~~~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s-~~a~~y~~lw~~fL~R 311 (1675)
...+.. .....-..+.-|..+.|..=..||-.+ +..+|.+.=+++++.+.+||..-.. .+...-|++-=+++.-
T Consensus 382 ds~~~v--~~~Aeed~~~~las~~P~~~I~~i~~~---Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqa 456 (516)
T KOG2956|consen 382 DSQDEV--MRVAEEDCLTTLASHLPLQCIVNISPL---ILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQA 456 (516)
T ss_pred CCchhH--HHHHHHHHHHHHHhhCchhHHHHHhhH---HhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHH
Confidence 100000 111123344445555554333322221 3347777778888899999976432 2333445555566666
Q ss_pred ccCCChhHHHHHHHHhHHHH
Q 000318 312 LTDRIVAVRMSVLEHVKSCL 331 (1675)
Q Consensus 312 ~~D~s~~VR~~~Ve~~~~iL 331 (1675)
+.-.+..||..+|=|...++
T Consensus 457 y~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 457 YDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred hcCchHHhhhhHHHhHHHHH
Confidence 67777778877776655443
No 182
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=31.49 E-value=1.4e+02 Score=37.50 Aligned_cols=112 Identities=16% Similarity=0.181 Sum_probs=77.0
Q ss_pred hhhhhcccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHH-HHHHHhcccCCCh---hHHHHHHHHhHHHHhcCCCC-
Q 000318 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSV-FSEFLKRLTDRIV---AVRMSVLEHVKSCLLTDPSR- 337 (1675)
Q Consensus 263 ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~l-w~~fL~R~~D~s~---~VR~~~Ve~~~~iL~~~p~~- 337 (1675)
.++.+..-|.+++-++|..|-+.+--++++.. +.+..-.+ -..|+-|.-|++- .=|.+.++.+..++.-.-..
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~--~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~ 103 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEE--SLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK 103 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHH--HHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc
Confidence 34444445667789999999999999998863 22221111 2245566655543 34788888888887752111
Q ss_pred CChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCC
Q 000318 338 ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS 376 (1675)
Q Consensus 338 ~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~ 376 (1675)
..-.-++.++....-++|++.|..+++.+|+++..++..
T Consensus 104 ~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~l 142 (371)
T PF14664_consen 104 EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPEL 142 (371)
T ss_pred cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHH
Confidence 122467788888888899999999999999999887664
No 183
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=30.98 E-value=1.9e+02 Score=35.59 Aligned_cols=132 Identities=17% Similarity=0.223 Sum_probs=0.0
Q ss_pred hhcchhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCCCCCchh--------hcHHHHHHHHhcccCCCh--------
Q 000318 254 RCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE--------QFHSVFSEFLKRLTDRIV-------- 317 (1675)
Q Consensus 254 ~~~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~--------~y~~lw~~fL~R~~D~s~-------- 317 (1675)
.++=.+|.+=+..|+..|.+....+...|.++|..|.+-.|..+++ .++.+=+-.--|..+...
T Consensus 48 ~l~~~iL~~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~ 127 (330)
T PF11707_consen 48 ELIRSILQNHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSK 127 (330)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccC
Q ss_pred -hHHHHHHHHhHHHHhcCC---------CCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHH
Q 000318 318 -AVRMSVLEHVKSCLLTDP---------SRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAE 387 (1675)
Q Consensus 318 -~VR~~~Ve~~~~iL~~~p---------~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~Vs~elL~~lae 387 (1675)
.||..+|+++-.+|...+ .+....-++++|.. |+.+.|+.- |.++.+
T Consensus 128 ~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~---D~~~~v~~i--------------------L~~l~~ 184 (330)
T PF11707_consen 128 PSIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRK---DPPETVILI--------------------LETLKD 184 (330)
T ss_pred cCHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccC---CCHHHHHHH--------------------HHHHHH
Q ss_pred hhccCChhHHH---------HHHHHHHHHHH
Q 000318 388 RLRDKSVLVKR---------YTMERLADIFR 409 (1675)
Q Consensus 388 R~RDKK~~VRk---------eAm~~La~LY~ 409 (1675)
++-.-. .|.+ .++..|+.+|.
T Consensus 185 ~Vl~~~-~v~r~~K~~~fn~~~L~~l~~Ly~ 214 (330)
T PF11707_consen 185 KVLKDS-SVSRSTKCKLFNEWTLSQLASLYS 214 (330)
T ss_pred HhccCC-CCChhhhhhhcCHHHHHHHHHHhc
No 184
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=30.92 E-value=1.3e+03 Score=32.02 Aligned_cols=40 Identities=23% Similarity=0.233 Sum_probs=28.6
Q ss_pred hHHHHHHHh-chhhhhcCCCcchhHHHHHHHHHHhhhcCCC
Q 000318 51 AMQPFLNAI-VQPVLLKHQDKDVKLLVATCICEITRITAPE 90 (1675)
Q Consensus 51 sl~~~~~~L-v~~~LL~HkD~~Vr~~vAcCLadIlRI~APd 90 (1675)
++..++..| +=..||.|.|+-+=-+++.|++-|.-=++|+
T Consensus 329 ~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~ 369 (1051)
T KOG0168|consen 329 EFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHG 369 (1051)
T ss_pred cchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccC
Confidence 355566665 4567888888888888888887776655554
No 185
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=30.65 E-value=2e+02 Score=33.76 Aligned_cols=97 Identities=15% Similarity=0.231 Sum_probs=62.2
Q ss_pred CchHHHHHHHHHHHHhhcCC-CCCchhhcHH-HHHHHHhcccCC----ChhHHHHHHHHhHHHHh---cCC-CCCChHHH
Q 000318 274 DQLDTRLKAVGLVGDLFAVP-GSANNEQFHS-VFSEFLKRLTDR----IVAVRMSVLEHVKSCLL---TDP-SRADAPQI 343 (1675)
Q Consensus 274 ed~~~Rl~At~llG~mfs~~-~s~~a~~y~~-lw~~fL~R~~D~----s~~VR~~~Ve~~~~iL~---~~p-~~~~~~ei 343 (1675)
.....++.+.+++..||+.+ +....-.|.. ..-.-+...... ...+|+++...+-++-. .++ ..+...++
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~l 201 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSEL 201 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 78899999999999999975 4445556665 344444444443 68899999888776422 223 22333456
Q ss_pred HHHHHhhhC-C-chhHHHHHHHHHHHHhh
Q 000318 344 LTALCDRLL-D-FDENVRKQVVAVICDVA 370 (1675)
Q Consensus 344 ~~~L~~rL~-D-~DEkVR~aaV~ai~~la 370 (1675)
+..+..-+. . .|+.+....+.+++.+.
T Consensus 202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~ 230 (268)
T PF08324_consen 202 LSSIIEVLSREESDEEALYRLLVALGTLL 230 (268)
T ss_dssp HHHHHHHCHCCHTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHh
Confidence 666666332 2 46666666677887776
No 186
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=30.24 E-value=1.5e+03 Score=30.32 Aligned_cols=185 Identities=15% Similarity=0.026 Sum_probs=110.5
Q ss_pred HHHHHhhcchhhhhhhhhhcccccCC-chHHHHHHHHHHHHhhcCCCCCchhhc-HHHHHHHHhcccCCChhHHHHHHHH
Q 000318 249 IYDVYRCSPQILSGVVPYLTGELLTD-QLDTRLKAVGLVGDLFAVPGSANNEQF-HSVFSEFLKRLTDRIVAVRMSVLEH 326 (1675)
Q Consensus 249 i~eL~~~~P~lL~~ViPqLe~EL~se-d~~~Rl~At~llG~mfs~~~s~~a~~y-~~lw~~fL~R~~D~s~~VR~~~Ve~ 326 (1675)
.--+.+.--+...+.+|-.|+-|.+. +.-.|-..+-+.|-+- .+. .....- ...-..|+.-..=.++.||.++..|
T Consensus 42 ~~~~~~~~~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a-~~~-~~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~ 119 (569)
T KOG1242|consen 42 EAAINQHGDQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLA-FHL-QIVDPRPISIIEILLEELDTPSKSVQRAVSTC 119 (569)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHH-Hhc-cccCcchhHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 33445666677778888888888865 5666666666666432 211 111111 2233467777778999999999999
Q ss_pred hHHHHhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhh--cCCCCHHHHHHHHHhhccCChhHHHHHHHHH
Q 000318 327 VKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA--LNSIPVETVKLVAERLRDKSVLVKRYTMERL 404 (1675)
Q Consensus 327 ~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~--l~~Vs~elL~~laeR~RDKK~~VRkeAm~~L 404 (1675)
.+....+.-. .....+.+-+.+.+.=++-.=|..+-..+.-+..-. ....+..+|..+..-++||+..-|++ ...+
T Consensus 120 l~~~~~~~~~-~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re-~~~~ 197 (569)
T KOG1242|consen 120 LPPLVVLSKG-LSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNRE-AALL 197 (569)
T ss_pred hhhHHHHhhc-cCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHH-HHHH
Confidence 8886654322 223455666666666555566666555554444322 23446678899999999999998888 3333
Q ss_pred HH-HHHHHhhhccCCCcchhccccchHHHhhhhccCCCC
Q 000318 405 AD-IFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFG 442 (1675)
Q Consensus 405 a~-LY~~~~~~~~~~~~~~~~~~wIP~~IL~~~Y~nd~~ 442 (1675)
+- .|....+ +....-+--+-..||.|+|+....
T Consensus 198 a~~~~~~~Lg-----~~~EPyiv~~lp~il~~~~d~~~~ 231 (569)
T KOG1242|consen 198 AFEAAQGNLG-----PPFEPYIVPILPSILTNFGDKINK 231 (569)
T ss_pred HHHHHHHhcC-----CCCCchHHhhHHHHHHHhhccchh
Confidence 32 2222222 111122334455677888876644
No 187
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=29.57 E-value=1e+03 Score=29.95 Aligned_cols=223 Identities=17% Similarity=0.210 Sum_probs=0.0
Q ss_pred CCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCchHHH
Q 000318 509 DGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDF 588 (1675)
Q Consensus 509 ~~d~~ei~~kL~~~i~~Ls~~fPDp~Ka~e~L~kf~klnD~Ri~kLLk~~idp~td~~t~~~a~kELlkkL~~~~~~~d~ 588 (1675)
+.+++....++.+.|-.+...| ..|=++.+..|.+--=.-+|++|.. ++++..|..+. +....|
T Consensus 102 d~~e~~~l~kvK~~i~~~~~ly--~~kY~e~f~~~l~~fv~~vw~lL~~-~~~~~~~D~lv-------------~~al~F 165 (370)
T PF08506_consen 102 DDDEPGLLEKVKAWICENLNLY--AEKYEEEFEPFLPTFVQAVWNLLTK-ISQQPKYDILV-------------SKALQF 165 (370)
T ss_dssp -SSS--HHHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHTC---SSGGGHHHH-------------HHHHHH
T ss_pred CcccccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH-hhhcccccHHH-------------HHHHHH
Q ss_pred HHHHHHhhhcc-cc-ChhHHHHHHHHH------------------------HhhcccchhhhHHHHHHHHHHHHhhCCcC
Q 000318 589 LSTLSMKCSYL-LF-NKEHVKEILLEV------------------------AAQKSSANAQFMQSCMDILGILARFSPLL 642 (1675)
Q Consensus 589 l~~Ll~R~S~l-i~-Nks~V~~LL~~v------------------------~~~~~~~~~~~~~~a~eLL~~IS~~~P~l 642 (1675)
+..+..+..+- +| |+.|+..|++.+ ..-..+...+....|.++|..+++.++..
T Consensus 166 L~~v~~~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~ 245 (370)
T PF08506_consen 166 LSSVAESPHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQ 245 (370)
T ss_dssp HHHHHTSHHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcchhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHH
Q ss_pred ccccHHHHHHHHhh-------ccccchHhHHHHHHHhhcchhhhhhcccc-----hHHHHHHHHhh-------cCChHHH
Q 000318 643 LGGTEEELVNLLKE-------ENEIIKEGILHVLAKAGGTIREQLAATSS-----SVDLLLERLCL-------EGSRRQA 703 (1675)
Q Consensus 643 Fk~~v~~Li~lL~~-------~~~~~~~~aLkiLak~~k~~~e~~~~~~s-----~l~~~L~~lal-------~GtpkqA 703 (1675)
...-+...+..+.. .+....+++|..+..++-.....-.+... .+..-+..... ...|-.-
T Consensus 246 v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLk 325 (370)
T PF08506_consen 246 VTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILK 325 (370)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchH
Q ss_pred HHHHHHHHhhcCCCccchHHHHHHHHHHhhhhcCCCchHHHHHH
Q 000318 704 KYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLG 747 (1675)
Q Consensus 704 KyAvr~Laa~~~~~~~~~~~~L~~~L~~~L~~~~~l~t~L~sLg 747 (1675)
=.|++.+....+-=....+..++..++.+|.......+..++.+
T Consensus 326 a~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 326 ADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp HHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhh
No 188
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=29.32 E-value=3.7e+02 Score=33.40 Aligned_cols=145 Identities=15% Similarity=0.134 Sum_probs=92.7
Q ss_pred hhhhcccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHH
Q 000318 264 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQI 343 (1675)
Q Consensus 264 iPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei 343 (1675)
+|.--....+-+.+.|..|..-|-.+.-..+-+..=.--.-|.--|+=.++.++.||.....-++.|..|||.- ...+
T Consensus 85 ~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~--Qe~v 162 (342)
T KOG2160|consen 85 IPIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKS--QEQV 162 (342)
T ss_pred hhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHH--HHHH
Confidence 45555556677888899999988766544321111111235888888889999999999999999999999942 1123
Q ss_pred HH------HHHhhhCCchhHHHHHHHHHHHHhhhhhcCC------C-CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000318 344 LT------ALCDRLLDFDENVRKQVVAVICDVACHALNS------I-PVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1675)
Q Consensus 344 ~~------~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~------V-s~elL~~laeR~RDKK~~VRkeAm~~La~LY~~ 410 (1675)
++ -+..--.|.+..||..|.-||+.+.....-. + ...+|..+.++= +.....++.|+..++.|-..
T Consensus 163 ~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~-~~~~~lkrK~~~Ll~~Ll~~ 241 (342)
T KOG2160|consen 163 IELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSN-NTSVKLKRKALFLLSLLLQE 241 (342)
T ss_pred HHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcC-CcchHHHHHHHHHHHHHHHh
Confidence 31 2222238999999999999998876543222 1 223444443331 13455666677777766664
Q ss_pred H
Q 000318 411 C 411 (1675)
Q Consensus 411 ~ 411 (1675)
.
T Consensus 242 ~ 242 (342)
T KOG2160|consen 242 D 242 (342)
T ss_pred h
Confidence 3
No 189
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=29.07 E-value=95 Score=40.18 Aligned_cols=63 Identities=17% Similarity=0.203 Sum_probs=38.5
Q ss_pred ccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCCC
Q 000318 312 LTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI 377 (1675)
Q Consensus 312 ~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V 377 (1675)
.+|+++-.|..=+=...-...-. . ...-+-.-|.--..|.++.||+|||-+++-+.|.+...+
T Consensus 525 l~d~ds~lRy~G~fs~alAy~GT-g--n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~~l 587 (926)
T COG5116 525 LYDKDSILRYNGVFSLALAYVGT-G--NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRDLL 587 (926)
T ss_pred hcCchHHhhhccHHHHHHHHhcC-C--cchhHhhhheeecccCchHHHHHHHHheeeeEecCcchh
Confidence 36788888876443332212110 1 111233344445899999999999999988777766654
No 190
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=28.80 E-value=1.3e+02 Score=30.40 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHHHhhhhhcCCCCH---HHHHHHHHhhccCChhHHHHHHHHHHHHHHHHh
Q 000318 355 DENVRKQVVAVICDVACHALNSIPV---ETVKLVAERLRDKSVLVKRYTMERLADIFRGCC 412 (1675)
Q Consensus 355 DEkVR~aaV~ai~~la~~~l~~Vs~---elL~~laeR~RDKK~~VRkeAm~~La~LY~~~~ 412 (1675)
+...|.++|-.+|.+....+..||. ++|..|+....| ...||+.+=+.|+..++.+.
T Consensus 2 ~~~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~ 61 (90)
T PF11919_consen 2 DLRRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQ 61 (90)
T ss_dssp H-HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCc
Confidence 3467899999999999988999987 578889999997 78999999999999999874
No 191
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=28.24 E-value=4.3e+02 Score=35.57 Aligned_cols=218 Identities=17% Similarity=0.251 Sum_probs=121.4
Q ss_pred ChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHhcCCC-----c----------H-----------HHHHHHHHHHHHh
Q 000318 163 HPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNK-----N----------D-----------TARRLAMNVIEQC 216 (1675)
Q Consensus 163 ~~~~V~~~m~~IL~~vI~Ese~vp~~vLd~IL~~l~~~~-----~----------~-----------~a~~lA~~v~~~~ 216 (1675)
.|.-+.+.|-|...+.=..++...+.++.-|=..|..+. + + .--+|..+||+--
T Consensus 455 ~PPGims~ldD~~At~Ha~~~~aDqa~~qrLn~~~~s~phF~~~s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm 534 (1106)
T KOG0162|consen 455 RPPGIMSALDDVCATAHADSEGADQALLQRLNKLFGSHPHFESRSNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELM 534 (1106)
T ss_pred CCchHHHHHHHHHHHhccccchhHHHHHHHHHHHhcCCCccccccCceEEEEeccceeeecccccccchhHHHHHHHHHH
Confidence 467788888888888887888888887776654553221 0 0 2246677776554
Q ss_pred hhhhHHHHHHHHHHhhcCCC--CCCCC----cchHHHHHHHHHhhcchhhhhhhhhhcccccCCchHHH-HHHHHHHHHh
Q 000318 217 AGKLEAGIKQFLVSSMSGDS--RPGHS----HIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTR-LKAVGLVGDL 289 (1675)
Q Consensus 217 ~dkL~~~I~qyf~~il~~~~--~~~~~----~~~~h~Li~eL~~~~P~lL~~ViPqLe~EL~sed~~~R-l~At~llG~m 289 (1675)
-..=.+.++..|-+-+..++ .+... ...+.+|+-.|.+|.|..+--+=|.=+- --.|=++-| +.-++-||
T Consensus 535 ~ts~~~Fl~slFPe~v~~dskrRP~Tag~kIkkqANdLVeTLmKc~P~YIR~IKPNeTK-~pnD~ee~~V~HQveYLG-- 611 (1106)
T KOG0162|consen 535 QTSENPFLKSLFPENVDADSKRRPPTAGDKIKKQANDLVETLMKCQPHYIRCIKPNETK-SPNDWEESRVKHQVEYLG-- 611 (1106)
T ss_pred hccchHHHHHhCchhhcccccCCCCCchhhHHhhHHHHHHHHHhcCcceeEeeCCCCCC-CCccHHHHHHHHHHHhcc--
Confidence 44444555555544333332 22222 2258999999999999999988887322 222223333 33445444
Q ss_pred hcCCC-C---CchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHH-HHhhhCCchhHHHHHHHH
Q 000318 290 FAVPG-S---ANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTA-LCDRLLDFDENVRKQVVA 364 (1675)
Q Consensus 290 fs~~~-s---~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~-L~~rL~D~DEkVR~aaV~ 364 (1675)
... . ...=+|+.+|..|+.||.=.+|.- |-.+- +++ .+-++. |.+--+++|+ --
T Consensus 612 --LqENiRvRRAGfAYRr~F~kF~qRyailsp~t---~~twq---------GD~-~~av~~il~~~~m~~~q-yQ----- 670 (1106)
T KOG0162|consen 612 --LQENIRVRRAGFAYRRAFDKFAQRYAILSPQT---WPTWQ---------GDE-KQAVEHILRDVNMPSDQ-YQ----- 670 (1106)
T ss_pred --hhhheeehhhhhHHHHHHHHHHHHheecCccc---ccccc---------cch-HHHHHHHHHhcCCChhH-hh-----
Confidence 221 0 112369999999999998888765 43221 222 222222 2223333332 11
Q ss_pred HHHHhhh-hhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhh
Q 000318 365 VICDVAC-HALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCL 413 (1675)
Q Consensus 365 ai~~la~-~~l~~Vs~elL~~laeR~RDKK~~VRkeAm~~La~LY~~~~~ 413 (1675)
+.. ..|-.-|+.++ +.|-||||++.== ..++-+.|+.+..
T Consensus 671 ----mG~tkVFiKnPEsLF--~LEemRer~~d~~---A~~IQkAWRrfv~ 711 (1106)
T KOG0162|consen 671 ----MGVTKVFIKNPESLF--LLEEMRERKWDGM---ARRIQKAWRRFVA 711 (1106)
T ss_pred ----ccceeEEecChHHHH--HHHHHHHHHhhHH---HHHHHHHHHHHHH
Confidence 122 22334466655 5688999988521 1233456666543
No 192
>PF08605 Rad9_Rad53_bind: Fungal Rad9-like Rad53-binding; InterPro: IPR013914 In Saccharomyces cerevisiae (Baker s yeast), the Rad9 is a key adaptor protein in DNA damage checkpoint pathways. DNA damage induces Rad9 phosphorylation, and Rad53 specifically associates with this region of Rad9, when phosphorylated, via the Rad53 IPR000253 from INTERPRO domain []. There is no clear higher eukaryotic ortholog to Rad9.
Probab=27.37 E-value=1e+02 Score=33.04 Aligned_cols=49 Identities=16% Similarity=0.258 Sum_probs=41.8
Q ss_pred CCceEEEEEEEecCCCCeeEEEccCCcceeeecCcccEEEecCCCCCCcccc
Q 000318 1388 DKQFYEGTIKSYDPIKKKHVILYDDEDVEVLRLDKERWELLDNGRKPTKKSK 1439 (1675)
Q Consensus 1388 D~~~Y~G~V~~y~~~~~~H~v~YdDGd~E~l~L~~e~~~~~~~~~~~~~~~~ 1439 (1675)
+..||+|++.+.+....+..|+++||. ..+.++.++.++-...++.+-+
T Consensus 21 ~~~yYPa~~~~~~~~~~~~~V~Fedg~---~~i~~~dv~~LDlRIGD~Vkv~ 69 (131)
T PF08605_consen 21 NLKYYPATCVGSGVDRDRSLVRFEDGT---YEIKNEDVKYLDLRIGDTVKVD 69 (131)
T ss_pred CCeEeeEEEEeecCCCCeEEEEEecCc---eEeCcccEeeeeeecCCEEEEC
Confidence 789999999999888778999999999 4456777889988888877666
No 193
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=27.15 E-value=1.3e+03 Score=32.11 Aligned_cols=164 Identities=16% Similarity=0.236 Sum_probs=92.7
Q ss_pred HccccCCCCCCHHHHHHHHHHHHHHHhhcCCCCch--------hhHHhHHHHHHHhchhhhhcCCCcchhHHHHHHHHHH
Q 000318 12 VGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPA--------SILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEI 83 (1675)
Q Consensus 12 ~g~kL~~~~~s~~eLlkrLk~L~~~Ls~~dQ~~~~--------~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadI 83 (1675)
+++++.+..++..+.-+++= ... .|.++. .+=++..++...|.+.. =.-.|.++.-..|.|+++-
T Consensus 44 V~~~IisldL~v~~Vy~~vW-----~~~-~~~~pM~v~YR~~Gl~geAtE~~v~~l~~~~-~~~~d~e~~~~~~~v~~~~ 116 (802)
T PF13764_consen 44 VNNKIISLDLPVRDVYEKVW-----KPN-NQNPPMRVVYRMRGLDGEATEEFVESLEDDS-EEEEDPEQEFKIASVLAEC 116 (802)
T ss_pred ecCeeecCCCcHHHHHHHHh-----ccc-CCCCCeEEEEeecCCCCccchhhHhhccCcc-ccccCHHHHHHHHHHhhcC
Confidence 34555666666666666664 222 333331 13356677777776542 1124555666666665431
Q ss_pred hhhcCCCCCCChhHHHHHHHHHHHhccCCCCC--CCCChhhHHHHHHHHHhhhhhh-eeccCCchHHHHHHHHHHHHhhc
Q 000318 84 TRITAPEAPYSDDVLKDIFQLIVGTFSGLKDT--GGPSFGRRVVILETLAKYRSCV-VMLDLECDELVNEMYSTFFAVAS 160 (1675)
Q Consensus 84 lRI~APdAPytd~qLkdIF~l~v~qf~~L~d~--~~p~f~q~~~LLE~LA~vks~v-l~~DL~~~~Li~~lF~~ff~~v~ 160 (1675)
.-|..++.+ +..+.+. +......-..||.....|+.+- .++.+.+-..+...++.+|..-.
T Consensus 117 ------------gGL~~ll~~----l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~ 180 (802)
T PF13764_consen 117 ------------GGLEVLLSR----LDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQ 180 (802)
T ss_pred ------------CCHHHHHHH----HHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCcc
Confidence 112222222 2222222 2234555677777777777666 44556666777788888887544
Q ss_pred CCChhhHHHHHHHHHHHHhccccc--c---------------cHHHHHHHHHHhc
Q 000318 161 DDHPESVLSSMQTIMIVLLEESED--I---------------QEDLLVILLSALG 198 (1675)
Q Consensus 161 ~~~~~~V~~~m~~IL~~vI~Ese~--v---------------p~~vLd~IL~~l~ 198 (1675)
+.....+..-++.||..++.|... + ..+.++.+|+++.
T Consensus 181 ~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~ 235 (802)
T PF13764_consen 181 NSSQAEIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLN 235 (802)
T ss_pred ccccchHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhc
Confidence 334456666777777777777543 2 4566888888885
No 194
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=27.10 E-value=95 Score=25.88 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=25.3
Q ss_pred HHHHHHHhhhCCchhHHHHHHHHHHHHhh
Q 000318 342 QILTALCDRLLDFDENVRKQVVAVICDVA 370 (1675)
Q Consensus 342 ei~~~L~~rL~D~DEkVR~aaV~ai~~la 370 (1675)
..++.|...|.+.|..||.+++-+++.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 36788889999999999999999998765
No 195
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=25.80 E-value=5e+02 Score=27.60 Aligned_cols=81 Identities=7% Similarity=0.027 Sum_probs=57.2
Q ss_pred HHHhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcC-----CCCHHHHHHHHHhhccC---ChhHHHHH
Q 000318 329 SCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN-----SIPVETVKLVAERLRDK---SVLVKRYT 400 (1675)
Q Consensus 329 ~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~-----~Vs~elL~~laeR~RDK---K~~VRkeA 400 (1675)
+++...+ ....+.+.+|.+||...+.+|.+.|+..+-.+....-. ..+.+.+..+...+..+ ...||..+
T Consensus 26 d~I~~~~--~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~ki 103 (133)
T cd03561 26 DLINLKP--NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKA 103 (133)
T ss_pred HHHhCCC--CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 3444443 34679999999999999999999999888777654322 22446666666666654 46899999
Q ss_pred HHHHHHHHHHH
Q 000318 401 MERLADIFRGC 411 (1675)
Q Consensus 401 m~~La~LY~~~ 411 (1675)
+..+...+..+
T Consensus 104 l~ll~~W~~~f 114 (133)
T cd03561 104 LELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHh
Confidence 88877766544
No 196
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=25.71 E-value=1.4e+03 Score=28.52 Aligned_cols=167 Identities=13% Similarity=0.195 Sum_probs=87.4
Q ss_pred HhhcCCCCCCCCcchHHHHHHHHHhh-cchhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCC-CCC------chhhc
Q 000318 230 SSMSGDSRPGHSHIDYHEVIYDVYRC-SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP-GSA------NNEQF 301 (1675)
Q Consensus 230 ~il~~~~~~~~~~~~~h~Li~eL~~~-~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~-~s~------~a~~y 301 (1675)
.++.|++.........+.|..|+++. .-.+|...+|.|+.| .|..++..++-++... +.. +...|
T Consensus 50 ~IL~G~~e~ep~~e~v~qLa~Ei~~~dll~~Li~~L~~L~fE-------srKdv~~if~~llr~~~~~~~~p~v~yl~~~ 122 (335)
T PF08569_consen 50 EILYGDGEPEPNPEQVAQLAQEIYRSDLLYLLIRNLPKLDFE-------SRKDVAQIFSNLLRRQIGSRSPPTVDYLERH 122 (335)
T ss_dssp HHHHS-SS----HHHHHHHHHHHHHHTHHHHHHHTGGGS-HH-------HHHHHHHHHHHHHT--BTTB--HHHHHHHT-
T ss_pred HHhcCCCCCCCCHHHHHHHHHHHHHhCHHHHHHHHhhhCCCc-------ccccHHHHHHHHHhhccCCCCCchHHHHHhC
Confidence 46777654444444578888888876 233455566776664 8999999999998763 222 34566
Q ss_pred -HHHHHHHHhcccCCChhHHHHHH-------HHhHHHHhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhh
Q 000318 302 -HSVFSEFLKRLTDRIVAVRMSVL-------EHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA 373 (1675)
Q Consensus 302 -~~lw~~fL~R~~D~s~~VR~~~V-------e~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~ 373 (1675)
|++...++.=..+.+..+=...+ +.+..+++.++ ...-+.+-..-+.=.|=..|...+.++-..+
T Consensus 123 ~peil~~L~~gy~~~dial~~g~mlRec~k~e~l~~~iL~~~-------~f~~ff~~~~~~~Fdiasdaf~t~~~llt~h 195 (335)
T PF08569_consen 123 RPEILDILLRGYENPDIALNCGDMLRECIKHESLAKIILYSE-------CFWKFFKYVQLPNFDIASDAFSTFKELLTRH 195 (335)
T ss_dssp -THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHHHHHHHTSG-------GGGGHHHHTTSSSHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHhcCccccchHHHHHHHHHhhHHHHHHHhCcH-------HHHHHHHHhcCCccHhHHHHHHHHHHHHhcc
Confidence 88888888777765543322111 00111111111 1112223344444445555555554443322
Q ss_pred cCCCCH-------HHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000318 374 LNSIPV-------ETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1675)
Q Consensus 374 l~~Vs~-------elL~~laeR~RDKK~~VRkeAm~~La~LY~~ 410 (1675)
-..+.. ..+...-..+.-.+.-.|+.++..||.|.-.
T Consensus 196 k~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellld 239 (335)
T PF08569_consen 196 KKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLD 239 (335)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHc
Confidence 221111 2344555666777778888888888887753
No 197
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=25.36 E-value=1.7e+03 Score=29.55 Aligned_cols=49 Identities=20% Similarity=0.168 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhcchhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCCC
Q 000318 245 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG 294 (1675)
Q Consensus 245 ~h~Li~eL~~~~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~ 294 (1675)
+..++..++...|+.|.+-+|.|...|..-++..|.+ +.++--+++...
T Consensus 182 LLrvlS~Vye~~P~~i~PhlP~l~~lL~q~~p~~~~l-l~~l~~LI~Qk~ 230 (851)
T KOG3723|consen 182 LLRVLSAVYEKQPQPINPHLPELLALLSQLEPEQYHL-LRLLHVLIKQKQ 230 (851)
T ss_pred HHHHHHHHHhcCCCccCcccHHHHHHhcCCCHHHHHH-HHHHHHHHHhcc
Confidence 5678889999999999999999999999999887654 455555666543
No 198
>PF02237 BPL_C: Biotin protein ligase C terminal domain; InterPro: IPR003142 This C-terminal domain has an SH3-like barrel fold, the function of which is unknown. It is found associated with prokaryotic bifunctional transcriptional repressors [] and eukaryotic enzymes involved in biotin utilization [, ]. In Escherichia coli the biotin operon repressor (BirA) is a bifunctional protein. BirA acts both as the acetyl-coA carboxylase biotin holoenzyme synthetase (6.3.4.15 from EC) and as the biotin operon repressor. DNA sequence analysis of mutations indicates that the helix-turn-helix DNA binding region is located at the N terminus while mutations affecting enzyme function, although mapping over a large region, are found mainly in the central part of the protein's primary sequence [].; GO: 0006464 protein modification process; PDB: 3RUX_A 2CGH_A 3L1A_B 3L2Z_A 1HXD_A 1BIB_A 2EWN_B 1BIA_A 2EJ9_A 3FJP_A ....
Probab=25.27 E-value=1.7e+02 Score=25.69 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=31.1
Q ss_pred cCceEEEecCCCCceEEEEEEEecCCCCeeEEEccCCcceee
Q 000318 1377 IGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVL 1418 (1675)
Q Consensus 1377 vG~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdDGd~E~l 1418 (1675)
+|++|+|..+ ...|.|.+.+.|+. +.=.|+.+||..+.+
T Consensus 2 lG~~V~v~~~--~~~~~G~~~gId~~-G~L~v~~~~g~~~~i 40 (48)
T PF02237_consen 2 LGQEVRVETG--DGEIEGIAEGIDDD-GALLVRTEDGSIRTI 40 (48)
T ss_dssp TTSEEEEEET--SCEEEEEEEEEETT-SEEEEEETTEEEEEE
T ss_pred CCCEEEEEEC--CeEEEEEEEEECCC-CEEEEEECCCCEEEE
Confidence 6999999994 34679999999876 777888888865544
No 199
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=25.09 E-value=6.7e+02 Score=31.69 Aligned_cols=123 Identities=17% Similarity=0.243 Sum_probs=84.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhchhhhhcCCCcchhHHHHHHHHHHhhhcCCCCCCC--h
Q 000318 18 TPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYS--D 95 (1675)
Q Consensus 18 ~~~~s~~eLlkrLk~L~~~Ls~~dQ~~~~~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~APdAPyt--d 95 (1675)
.||......+..|.+|-+.+.. |+. ..+..-++.+.-.|...-++-|--.-||..+.--|-.|++-+. ..+.. .
T Consensus 223 ~p~p~l~~vL~fl~~Ll~~~~~--~~~-~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~-~~~~~~~~ 298 (373)
T PF14911_consen 223 APPPRLASVLAFLQQLLKRLQR--QNE-NQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQ-VGSSGEPR 298 (373)
T ss_pred CCCCcHHHHHHHHHHHHHhcCc--ccc-hhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHccc-ccCcchHH
Confidence 3677777888888888777652 222 2445556667777777777777677799998888888888655 12222 4
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhheeccCCchHHHHHHHHHHHHhhc
Q 000318 96 DVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVAS 160 (1675)
Q Consensus 96 ~qLkdIF~l~v~qf~~L~d~~~p~f~q~~~LLE~LA~vks~vl~~DL~~~~Li~~lF~~ff~~v~ 160 (1675)
+++..+|.-|+.---. -|-.+||.+|+++|... .++|..||-++=..+.
T Consensus 299 ~~l~s~lrsfvqk~l~------~~t~~~f~~l~~vA~l~----------p~lV~~Lip~i~q~l~ 347 (373)
T PF14911_consen 299 EQLTSVLRSFVQKYLA------HYTYQYFQFLEKVAELD----------PQLVISLIPTIRQSLK 347 (373)
T ss_pred HHHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHhC----------HHHHHHHHHHHHHHHH
Confidence 7888888888874322 24478999999999864 4667777766655544
No 200
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.68 E-value=9.5e+02 Score=30.23 Aligned_cols=146 Identities=15% Similarity=0.174 Sum_probs=105.9
Q ss_pred hhhhhhhcccccCCchHHHHHHHHHHHHhhcCCC--CCchhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCC
Q 000318 261 SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG--SANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRA 338 (1675)
Q Consensus 261 ~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~--s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~ 338 (1675)
.+-+|.|-.-|.+.|.++|--+|.-+|.+--... --++++-|-+-.+...=+.|-++.|.++..-+... |.+.. .
T Consensus 207 aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrn-lasdt--~ 283 (550)
T KOG4224|consen 207 AGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRN-LASDT--E 283 (550)
T ss_pred cCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhh-hcccc--h
Confidence 3578888889999999999999999997654431 23678888899999999999999988877666543 33221 1
Q ss_pred ChHHHH-----HHHHhhhCCchhHHHHHHHHHHHHhhhhhcCCCCH---HHHHHHHHhhccCChh-HHHHHHHHHHHHHH
Q 000318 339 DAPQIL-----TALCDRLLDFDENVRKQVVAVICDVACHALNSIPV---ETVKLVAERLRDKSVL-VKRYTMERLADIFR 409 (1675)
Q Consensus 339 ~~~ei~-----~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~Vs~---elL~~laeR~RDKK~~-VRkeAm~~La~LY~ 409 (1675)
-..+|+ +.+-+.|.|+--..=++.|..|..++.+.+..++. -+|+-|...+|=+... +...|...|-+|-.
T Consensus 284 Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAa 363 (550)
T KOG4224|consen 284 YQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAA 363 (550)
T ss_pred hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhh
Confidence 223444 46777778888888889999998888888876543 4566666666655554 78888777766544
No 201
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=24.59 E-value=4.2e+02 Score=35.41 Aligned_cols=172 Identities=13% Similarity=0.097 Sum_probs=103.0
Q ss_pred hhcccccCCchHHHHHHHHHHHHhhcC---CCCCchhhcHHHHH---HHH-hcccCCChhHHHHHHHHhHH------HHh
Q 000318 266 YLTGELLTDQLDTRLKAVGLVGDLFAV---PGSANNEQFHSVFS---EFL-KRLTDRIVAVRMSVLEHVKS------CLL 332 (1675)
Q Consensus 266 qLe~EL~sed~~~Rl~At~llG~mfs~---~~s~~a~~y~~lw~---~fL-~R~~D~s~~VR~~~Ve~~~~------iL~ 332 (1675)
....+|.+-.+..|..+.+-.--|--. .+.....+.-.++. .++ .+. ++..+|.+|+.+.+. +|.
T Consensus 335 f~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~--kd~~~~aaa~l~~~s~srsV~aL~ 412 (678)
T KOG1293|consen 335 FICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPI--KDHDFVAAALLCLKSFSRSVSALR 412 (678)
T ss_pred HHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHcccccc--ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777888887765432211110 01122233333332 222 222 457788888777654 455
Q ss_pred cCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCCCCHH-----HHHHHHHhhccCChhHHHHHHHHHHHH
Q 000318 333 TDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE-----TVKLVAERLRDKSVLVKRYTMERLADI 407 (1675)
Q Consensus 333 ~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~Vs~e-----lL~~laeR~RDKK~~VRkeAm~~La~L 407 (1675)
+-+.+ .++..-|-.-|+||+-.|-..+.-+||.+.. .|...-.. .+..|..-+.|+-+.+|+.+...|
T Consensus 413 tg~~~---~dv~~plvqll~dp~~~i~~~~lgai~NlVm-efs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~L--- 485 (678)
T KOG1293|consen 413 TGLKR---NDVAQPLVQLLMDPEIMIMGITLGAICNLVM-EFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVL--- 485 (678)
T ss_pred cCCcc---chhHHHHHHHhhCcchhHHHHHHHHHHHHHh-hcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHH---
Confidence 55543 3688888888999999999999999998653 22222222 356788999999999998776655
Q ss_pred HHHHhhhccCCCcchhccccchHHHhhhhccCCCCchhHHHH
Q 000318 408 FRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESV 449 (1675)
Q Consensus 408 Y~~~~~~~~~~~~~~~~~~wIP~~IL~~~Y~nd~~~~lVE~v 449 (1675)
|+..+.. +...-.+-+.-||...+.+ |+||++....|+.
T Consensus 486 r~l~f~~--de~~k~~~~~ki~a~~i~~-l~nd~d~~Vqeq~ 524 (678)
T KOG1293|consen 486 RHLMFNC--DEEEKFQLLAKIPANLILD-LINDPDWAVQEQC 524 (678)
T ss_pred HHHHhcc--hHHHHHHHHHHhhHHHHHH-HHhCCCHHHHHHH
Confidence 4433321 0001123467889988876 5788764444444
No 202
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=24.51 E-value=26 Score=40.90 Aligned_cols=18 Identities=39% Similarity=0.577 Sum_probs=11.0
Q ss_pred cccccccCCCCCCccccc
Q 000318 1607 SREEANEDGKSDSEGNEE 1624 (1675)
Q Consensus 1607 ~~~~~~~~~~~d~~~~~~ 1624 (1675)
+++++++++++|+++.++
T Consensus 244 s~~d~d~e~esd~de~Ee 261 (303)
T KOG3064|consen 244 SDEDSDSEDESDSDEIEE 261 (303)
T ss_pred cccccccccCCchhhHHH
Confidence 555656666666665543
No 203
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=24.01 E-value=2.9e+02 Score=30.64 Aligned_cols=77 Identities=16% Similarity=0.113 Sum_probs=47.6
Q ss_pred hhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhH
Q 000318 317 VAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLV 396 (1675)
Q Consensus 317 ~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~Vs~elL~~laeR~RDKK~~V 396 (1675)
-..|..|+-.+..+.. ......+++.+...+.|.+.-||.++--++.+++.. -|..++..+.....+.....
T Consensus 120 ~~rR~~~~~~~~~~~~----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~----~~~~v~~~l~~~~~~~~~~t 191 (197)
T cd06561 120 WVRRAAIVLLLRLIKK----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK----DPERVIAFLEKNGLSMPRLT 191 (197)
T ss_pred HHHHHHHHHHHHHHHh----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh----CHHHHHHHHHHHHHhCChHH
Confidence 3455556666655443 112456777777777888888998888888887776 34555655555544444444
Q ss_pred HHHHH
Q 000318 397 KRYTM 401 (1675)
Q Consensus 397 RkeAm 401 (1675)
.++|+
T Consensus 192 ~r~a~ 196 (197)
T cd06561 192 LRYAI 196 (197)
T ss_pred HHHHc
Confidence 44443
No 204
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=23.93 E-value=4.1e+02 Score=32.55 Aligned_cols=126 Identities=10% Similarity=0.179 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhccccc-------ccHHHHHHHHHHhcCC----CcHHHHHHHHHHHHHhhhhhHHHHHHHHHHh----
Q 000318 167 VLSSMQTIMIVLLEESED-------IQEDLLVILLSALGRN----KNDTARRLAMNVIEQCAGKLEAGIKQFLVSS---- 231 (1675)
Q Consensus 167 V~~~m~~IL~~vI~Ese~-------vp~~vLd~IL~~l~~~----~~~~a~~lA~~v~~~~~dkL~~~I~qyf~~i---- 231 (1675)
|...++.++...|+-++. +=+.+++.+|.-...+ +....-.+...||++-.+.+.+.+.+.|..+
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~T 122 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECT 122 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 445556666666665442 2234444444322222 2225567888888888887777777776543
Q ss_pred ---hcCCCCCC-CCcchHHHHHHHHHhhcchhhh--------hhhhhhcccccCCchHHHHHHHHHHHHhhcC
Q 000318 232 ---MSGDSRPG-HSHIDYHEVIYDVYRCSPQILS--------GVVPYLTGELLTDQLDTRLKAVGLVGDLFAV 292 (1675)
Q Consensus 232 ---l~~~~~~~-~~~~~~h~Li~eL~~~~P~lL~--------~ViPqLe~EL~sed~~~Rl~At~llG~mfs~ 292 (1675)
+..+-... +-....+.++..+.+.||..|. .++-.+..-+++.+.++-..+.+.+..|+..
T Consensus 123 l~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~ 195 (319)
T PF08767_consen 123 LPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNN 195 (319)
T ss_dssp HHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 33331111 1123478888888888777665 4566667777888888888888888888853
No 205
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=23.78 E-value=1.1e+03 Score=29.58 Aligned_cols=196 Identities=16% Similarity=0.178 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHhhhhhHHHHH----HHHHHhhcCCCCCCCCcchHHHHHHHHHhh-------cchhhhhhhhhhccccc
Q 000318 204 TARRLAMNVIEQCAGKLEAGIK----QFLVSSMSGDSRPGHSHIDYHEVIYDVYRC-------SPQILSGVVPYLTGELL 272 (1675)
Q Consensus 204 ~a~~lA~~v~~~~~dkL~~~I~----qyf~~il~~~~~~~~~~~~~h~Li~eL~~~-------~P~lL~~ViPqLe~EL~ 272 (1675)
+||++.+-+|.... -++..++ -|+.-.+..+....-+...+..+|+.+..+ ...++..++--.|+
T Consensus 44 a~yRilRy~i~d~~-~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~--- 119 (371)
T PF14664_consen 44 AGYRILRYLISDEE-SLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEH--- 119 (371)
T ss_pred HHHHHHHHHHcCHH-HHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhC---
Confidence 78888888776542 2222222 111112222221111223577888888777 34566666666666
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCCch---hhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCC-------CChHH
Q 000318 273 TDQLDTRLKAVGLVGDLFAVPGSANN---EQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR-------ADAPQ 342 (1675)
Q Consensus 273 sed~~~Rl~At~llG~mfs~~~s~~a---~~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~-------~~~~e 342 (1675)
.+...|..|.+||.++.-... .++ --++.+.+. ..|-..++=-.++...-++| ++|.. -+...
T Consensus 120 -~~D~lr~~cletL~El~l~~P-~lv~~~gG~~~L~~~----l~d~~~~~~~~l~~~lL~lL-d~p~tR~yl~~~~dL~~ 192 (371)
T PF14664_consen 120 -EDDRLRRICLETLCELALLNP-ELVAECGGIRVLLRA----LIDGSFSISESLLDTLLYLL-DSPRTRKYLRPGFDLES 192 (371)
T ss_pred -CchHHHHHHHHHHHHHHhhCH-HHHHHcCCHHHHHHH----HHhccHhHHHHHHHHHHHHh-CCcchhhhhcCCccHHH
Confidence 788899999999999875422 111 122344444 44444445445555555544 45532 22334
Q ss_pred HHHHHHhh----hCCchhHHHHH-HHHHHHHhhh-----hhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000318 343 ILTALCDR----LLDFDENVRKQ-VVAVICDVAC-----HALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1675)
Q Consensus 343 i~~~L~~r----L~D~DEkVR~a-aV~ai~~la~-----~~l~~Vs~elL~~laeR~RDKK~~VRkeAm~~La~LY~~ 410 (1675)
++..+.+- ..+..+-=|.+ +.++|..+-. ..+..-+...++.+.+=++=..+.||+.-+..|-.+++.
T Consensus 193 l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllri 270 (371)
T PF14664_consen 193 LLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRI 270 (371)
T ss_pred HHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCC
Confidence 45555444 22222111333 3334433322 111222336788888888888889999999999999984
No 206
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=23.31 E-value=5.3e+02 Score=29.04 Aligned_cols=66 Identities=14% Similarity=0.179 Sum_probs=54.7
Q ss_pred HHHHHHHhcccCCChhHHHHHHHHhHHHHhc---CCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhh
Q 000318 303 SVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT---DPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA 373 (1675)
Q Consensus 303 ~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~---~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~ 373 (1675)
..|...|.-+.+.+..||...++.+.-++.. ||. +.++.|.-..-|++..||..|.....++....
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~-----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK-----QCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH-----HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 3577888888899999999999999988864 553 78899999999999999999888877765433
No 207
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=23.05 E-value=5.5e+02 Score=27.98 Aligned_cols=74 Identities=18% Similarity=0.129 Sum_probs=55.1
Q ss_pred CChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhh-----cCCCCHHHHHHHHHhhcc-CChhHHHHHHHHHHHHHHHH
Q 000318 338 ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-----LNSIPVETVKLVAERLRD-KSVLVKRYTMERLADIFRGC 411 (1675)
Q Consensus 338 ~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~-----l~~Vs~elL~~laeR~RD-KK~~VRkeAm~~La~LY~~~ 411 (1675)
....+.+.+|.+||...+.+|=+.|+..+-.+.... ....+.+++..|...+.+ -...||..++..+-.....+
T Consensus 33 ~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 33 NGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence 346799999999999999999999888887776532 233466677777666666 46789998888776654443
No 208
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=22.89 E-value=6.9e+02 Score=28.72 Aligned_cols=103 Identities=13% Similarity=0.093 Sum_probs=67.9
Q ss_pred hhHHhHHHHHHHhchhhhhcCCCcchhHHHHHHHHHHhhhcCCCCCCChhH-------HHHHHHHHHHhccCCCCCCCCC
Q 000318 47 SILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDV-------LKDIFQLIVGTFSGLKDTGGPS 119 (1675)
Q Consensus 47 ~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~APdAPytd~q-------LkdIF~l~v~qf~~L~d~~~p~ 119 (1675)
.|-...+.++..|+...+=.+....-.++++|||+-|--==.+|+-|+.+. --.||..|-+-+.-.
T Consensus 30 ~dFr~~rdi~e~ll~~~~~~~a~~~k~l~i~QfLsRI~eG~~LD~~Fd~~~~~TPLESAl~v~~~I~~E~~~~------- 102 (200)
T cd00280 30 EDFRRTRDIAEALLVGPLKLTATQLKTLRIMQFLSRIAEGKNLDCQFENDEELTPLESALMVLESIEKEFSLP------- 102 (200)
T ss_pred HHHHHHHHHHHHHHhccccccccchhHhHHHHHHHHHHcCCCCCCccCCCCCcChHHHHHHHHHHHHHhcCCc-------
Confidence 466777888888888777777777788999999876655556899997532 346677666655411
Q ss_pred hhhHHHHHHHHHhhhhhheeccCCchHHHHHHHHHHHH
Q 000318 120 FGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFA 157 (1675)
Q Consensus 120 f~q~~~LLE~LA~vks~vl~~DL~~~~Li~~lF~~ff~ 157 (1675)
..-+..++.+-.+..+++|..-.--+.-.++|+.+|+
T Consensus 103 -~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 103 -ETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 1234455566666666666554334556667777776
No 209
>PF10266 Strumpellin: Hereditary spastic paraplegia protein strumpellin; InterPro: IPR019393 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. Strumpellin contains one known domain called a spectrin repeat that consists of three alpha-helices of a characteristic length wrapped in a left-handed coiled coil. The spectrin proteins have multiple copies of this repeat, which can then form multimers in the cell. Spectrin associates with the cell membrane via spectrin repeats in the ankyrin protein. The spectrin repeat is a structural platform for cytoskeletal protein assemblies. Two closely situated point mutations in human strumpellin lead to the condition of hereditary spastic paraplegia.
Probab=21.87 E-value=2.6e+03 Score=30.37 Aligned_cols=19 Identities=11% Similarity=0.219 Sum_probs=10.6
Q ss_pred HHHHhhccCChhHHHHHHH
Q 000318 384 LVAERLRDKSVLVKRYTME 402 (1675)
Q Consensus 384 ~laeR~RDKK~~VRkeAm~ 402 (1675)
.+...+|+=+..+|-..+.
T Consensus 338 ~ll~~ir~~Nv~lRWl~LH 356 (1081)
T PF10266_consen 338 KLLNLIRECNVTLRWLLLH 356 (1081)
T ss_pred HHHHHHHHhhHHHHHHHhc
Confidence 3345556666666665554
No 210
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=21.58 E-value=2.7e+02 Score=30.19 Aligned_cols=71 Identities=17% Similarity=0.211 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccH------HHHHHHHhh-ccccchHhHHHHHHHhhcc
Q 000318 603 KEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE------EELVNLLKE-ENEIIKEGILHVLAKAGGT 675 (1675)
Q Consensus 603 ks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v------~~Li~lL~~-~~~~~~~~aLkiLak~~k~ 675 (1675)
++.+..|.+++.. +|..-.-.|+.||..+.+.|...|...+ ++|+.++.. ..+.+...+|.++..|+..
T Consensus 40 k~a~ral~krl~~----~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 40 KYAMRALKKRLLS----KNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHHHHHHHcC----CChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 4555555555432 2222334567788888888877776553 667776654 2334677888888888755
Q ss_pred hh
Q 000318 676 IR 677 (1675)
Q Consensus 676 ~~ 677 (1675)
++
T Consensus 116 f~ 117 (142)
T cd03569 116 FR 117 (142)
T ss_pred hC
Confidence 43
No 211
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.57 E-value=4e+02 Score=36.30 Aligned_cols=91 Identities=19% Similarity=0.264 Sum_probs=72.0
Q ss_pred chHHHHHHHHHhhcchhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHH
Q 000318 243 IDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMS 322 (1675)
Q Consensus 243 ~~~h~Li~eL~~~~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~ 322 (1675)
.+.-..|-+.+--.|+.+.-|+..+|+ .|-.+|+-|++++.-+++..+.
T Consensus 107 dd~g~~iae~fik~qd~I~lll~~~e~----~DF~VR~~aIqLlsalls~r~~--------------------------- 155 (970)
T KOG0946|consen 107 DDLGLWIAEQFIKNQDNITLLLQSLEE----FDFHVRLYAIQLLSALLSCRPT--------------------------- 155 (970)
T ss_pred hHHHHHHHHHHHcCchhHHHHHHHHHh----hchhhhhHHHHHHHHHHhcCCH---------------------------
Confidence 345667888888889999999988887 8899999999999999887652
Q ss_pred HHHHhHHHHhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhh
Q 000318 323 VLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA 373 (1675)
Q Consensus 323 ~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~ 373 (1675)
.+.++|+.+|. =+..|.+-|.|..|-||-+++-.++++...+
T Consensus 156 ---e~q~~ll~~P~------gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n 197 (970)
T KOG0946|consen 156 ---ELQDALLVSPM------GISKLMDLLRDSREPIRNEAILLLSELVKDN 197 (970)
T ss_pred ---HHHHHHHHCch------hHHHHHHHHhhhhhhhchhHHHHHHHHHccC
Confidence 23456777775 3456778899999999999999988876644
No 212
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=20.87 E-value=1.9e+03 Score=28.32 Aligned_cols=105 Identities=22% Similarity=0.253 Sum_probs=58.3
Q ss_pred hhhcCCCcc-hhHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHHHhcc--------CCCCCCCCChhh-HHHHHHHHHh
Q 000318 63 VLLKHQDKD-VKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFS--------GLKDTGGPSFGR-RVVILETLAK 132 (1675)
Q Consensus 63 ~LL~HkD~~-Vr~~vAcCLadIlRI~APdAPytd~qLkdIF~l~v~qf~--------~L~d~~~p~f~q-~~~LLE~LA~ 132 (1675)
.||.|.+++ +-.|+-.-|.|+|+= +..=-++|+.+...+. +|-+-+++++.. -++||.-++.
T Consensus 72 ~LlS~~~kdd~v~yvL~li~DmLs~--------d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~ 143 (442)
T KOG2759|consen 72 NLLSHIDKDDTVQYVLTLIDDMLSE--------DRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLAC 143 (442)
T ss_pred HHhchhhhHHHHHHHHHHHHHHHhh--------CchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 356666654 667777778999972 2222233333332222 222335665544 7888888888
Q ss_pred hhhhheeccCCchHHHHHHHHHHHHhhc-CCChhhHHHHHHHHHHHHhcc
Q 000318 133 YRSCVVMLDLECDELVNEMYSTFFAVAS-DDHPESVLSSMQTIMIVLLEE 181 (1675)
Q Consensus 133 vks~vl~~DL~~~~Li~~lF~~ff~~v~-~~~~~~V~~~m~~IL~~vI~E 181 (1675)
.-.|.+-.+ ...+|..++.-.. ..++..-..++..+|..++-.
T Consensus 144 ~g~~~~~~~------e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~ 187 (442)
T KOG2759|consen 144 FGNCKMELS------ELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV 187 (442)
T ss_pred hccccccch------HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC
Confidence 777766331 2233333333322 346666666777777776654
No 213
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.82 E-value=2.3e+03 Score=29.38 Aligned_cols=147 Identities=16% Similarity=0.120 Sum_probs=106.2
Q ss_pred HHHHHHHHHhhcCCCCCCCCcch--HHHHHHHHHhhcchhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCCCCCchh
Q 000318 222 AGIKQFLVSSMSGDSRPGHSHID--YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE 299 (1675)
Q Consensus 222 ~~I~qyf~~il~~~~~~~~~~~~--~h~Li~eL~~~~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~ 299 (1675)
.-++..|.+++.-- ...+...+ .|.-+.-.-..-|++=...++.+-..-..++..+|..|++++|.+= . ..
T Consensus 45 ~DvSslF~dvvk~~-~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~-v-----~~ 117 (734)
T KOG1061|consen 45 KDVSSLFPDVVKCM-QTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLR-V-----DK 117 (734)
T ss_pred cchHhhhHHHHhhc-ccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEe-e-----hH
Confidence 44555666665421 01111111 2333333446678888888999999999999999999999998442 2 22
Q ss_pred hcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcC
Q 000318 300 QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN 375 (1675)
Q Consensus 300 ~y~~lw~~fL~R~~D~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~ 375 (1675)
.-.-++...++-.+|..+.||...+-++..+-.-++..-...-++..|..-+.|.+.-|=..|+.++..+...+.+
T Consensus 118 i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 118 ITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence 2234778888999999999999999888876666665444457889999999999999999999999988876654
No 214
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=20.65 E-value=3.4e+02 Score=30.66 Aligned_cols=111 Identities=23% Similarity=0.328 Sum_probs=55.0
Q ss_pred cchhHHHHHHHHHHhhhcCCCCCC--ChhHHHHHHHHHHHhccCC-CCCCCCChhhHHHHHHHHHhhhhhheeccCCchH
Q 000318 70 KDVKLLVATCICEITRITAPEAPY--SDDVLKDIFQLIVGTFSGL-KDTGGPSFGRRVVILETLAKYRSCVVMLDLECDE 146 (1675)
Q Consensus 70 ~~Vr~~vAcCLadIlRI~APdAPy--td~qLkdIF~l~v~qf~~L-~d~~~p~f~q~~~LLE~LA~vks~vl~~DL~~~~ 146 (1675)
.-||..++-||..|+.-..|..|+ ..++|.+||..--.. .+ ......+|++-+-||.. +.
T Consensus 21 DrvR~~A~~~l~~ll~~~~~~~~~ip~~~~L~~i~~~~~~~--~~~w~~~~~~F~~l~~LL~~---------------~~ 83 (193)
T PF12612_consen 21 DRVREVAGKCLQRLLHSQDPTIPHIPHREELQDIFPSESEA--SLNWSSSSEYFPRLVKLLDL---------------PE 83 (193)
T ss_pred HHHHHHHHHHHHHHhcCCCccccCCCcHHHHHHHccccccc--ccccCCHHHHHHHHHHHhcc---------------HH
Confidence 349999999999999544343333 336777777543221 11 11122344444433321 13
Q ss_pred HHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhc---ccccccHHHHHHHHHHhc
Q 000318 147 LVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLE---ESEDIQEDLLVILLSALG 198 (1675)
Q Consensus 147 Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI~---Ese~vp~~vLd~IL~~l~ 198 (1675)
.-..++..+.--+ ++..+.+......-|...+. +.......++..|+..+.
T Consensus 84 y~~~ll~Glv~S~-G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il~ 137 (193)
T PF12612_consen 84 YRYSLLSGLVVSA-GGLTESLVRASSAALLSYLRELSDSPEELEQVLSDLLSILK 137 (193)
T ss_pred HHHHHHhHHHhcC-CCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 3334444444333 33444555555555555553 333444555555555553
No 215
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.64 E-value=2.4e+03 Score=29.48 Aligned_cols=285 Identities=14% Similarity=0.160 Sum_probs=150.7
Q ss_pred CChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCCh
Q 000318 315 RIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSV 394 (1675)
Q Consensus 315 ~s~~VR~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~Vs~elL~~laeR~RDKK~ 394 (1675)
+++-=++..+..+..++..++.+ ...+.+.+..+|.--+|.|=.+|-.+|+.+.+.....+.. .+..+.--+.--+.
T Consensus 220 ~~~~A~~~lir~~~~~l~~~~~~--~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p-avs~Lq~flssp~~ 296 (865)
T KOG1078|consen 220 KSPLAVCMLIRIASELLKENQQA--DSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP-AVSVLQLFLSSPKV 296 (865)
T ss_pred cchhHHHHHHHHHHHHhhhcccc--hhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch-HHHHHHHHhcCcHH
Confidence 45555666666666777766443 2478889999999999999999999999998877666655 34444445556677
Q ss_pred hHHHHHHHHHHHHHHHHhhhccCCCcchhccccchHHHhhhh-----ccCCCCchhHHHHhhccCcCC-CCCHHHHHHHH
Q 000318 395 LVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCL-----YDKDFGSDTIESVLCGSLFPT-GFSVKDRVRHW 468 (1675)
Q Consensus 395 ~VRkeAm~~La~LY~~~~~~~~~~~~~~~~~~wIP~~IL~~~-----Y~nd~~~~lVE~vL~e~LlP~-~~~~~~R~~~l 468 (1675)
..|-.|+..|-++=-.+ |.++-.|- .+.|.+ ..|-..--..|+-. .....+|..+.
T Consensus 297 ~lRfaAvRtLnkvAm~~-----------------P~~v~~cN~elE~lItd~N-rsIat~AITtLLKTG~e~sv~rLm~q 358 (865)
T KOG1078|consen 297 ALRFAAVRTLNKVAMKH-----------------PQAVTVCNLDLESLITDSN-RSIATLAITTLLKTGTESSVDRLMKQ 358 (865)
T ss_pred HHHHHHHHHHHHHHHhC-----------------CccccccchhHHhhhcccc-cchhHHHHHHHHHhcchhHHHHHHHH
Confidence 88988888876665543 33332221 011211 11111111111111 11122343322
Q ss_pred -HHHHhcCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCchHHHHHH
Q 000318 469 -VRIFSGFDR-------IEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENF 540 (1675)
Q Consensus 469 -l~l~~~LD~-------~~~kal~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kL~~~i~~Ls~~fPDp~Ka~e~L 540 (1675)
..+.+.+++ .+..+|...+-++ ...+..||.-.= .++|. =+.++.+..+|-.+...-||.
T Consensus 359 I~~fv~disDeFKivvvdai~sLc~~fp~k---~~~~m~FL~~~L-r~eGg-~e~K~aivd~Ii~iie~~pds------- 426 (865)
T KOG1078|consen 359 ISSFVSDISDEFKIVVVDAIRSLCLKFPRK---HTVMMNFLSNML-REEGG-FEFKRAIVDAIIDIIEENPDS------- 426 (865)
T ss_pred HHHHHHhccccceEEeHHHHHHHHhhccHH---HHHHHHHHHHHH-HhccC-chHHHHHHHHHHHHHHhCcch-------
Confidence 233444433 3444444444433 345556664321 11222 233444444554454555554
Q ss_pred HHHHhhccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHhhhccccChhHHHHHHHHHHhh
Q 000318 541 LILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHR----LYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQ 616 (1675)
Q Consensus 541 ~kf~klnD~Ri~kLLk~~idp~td~~t~~~a~kELlkkL~~~~~----~~d~l~~Ll~R~S~li~Nks~V~~LL~~v~~~ 616 (1675)
+.+++-.|-.++-|.+.+. ..-.++..||...| ...++. .+||+-++..-+-
T Consensus 427 ------Ke~~L~~LCefIEDce~~~-----i~~rILhlLG~EgP~a~~Pskyir--------~iyNRviLEn~iv----- 482 (865)
T KOG1078|consen 427 ------KERGLEHLCEFIEDCEFTQ-----IAVRILHLLGKEGPKAPNPSKYIR--------FIYNRVILENAIV----- 482 (865)
T ss_pred ------hhHHHHHHHHHHHhccchH-----HHHHHHHHHhccCCCCCCcchhhH--------HHhhhhhhhhhhh-----
Confidence 4455555556665554333 23456777774322 112332 2455544443332
Q ss_pred cccchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccccchHh
Q 000318 617 KSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEG 664 (1675)
Q Consensus 617 ~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v~~Li~lL~~~~~~~~~~ 664 (1675)
...|...|-.|+.-+|.+..+-.--|..++.+.++.+.+.
T Consensus 483 --------RaaAv~alaKfg~~~~~l~~sI~vllkRc~~D~DdevRdr 522 (865)
T KOG1078|consen 483 --------RAAAVSALAKFGAQDVVLLPSILVLLKRCLNDSDDEVRDR 522 (865)
T ss_pred --------HHHHHHHHHHHhcCCCCccccHHHHHHHHhcCchHHHHHH
Confidence 1223455666777778888777777777888766544443
No 216
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=20.58 E-value=3.5e+02 Score=35.22 Aligned_cols=109 Identities=19% Similarity=0.156 Sum_probs=57.1
Q ss_pred HHhhcCCCccchHHHHHHHHHHhhhhc---CCCchHHHHHHHHHhhcccccccchHHHHHHHHHhhhcccCccCCCCCCC
Q 000318 710 LAAITKDDGLKSLSVLYKRLVDMLEEK---THLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKAC 786 (1675)
Q Consensus 710 Laa~~~~~~~~~~~~L~~~L~~~L~~~---~~l~t~L~sLg~Iaq~aP~vfe~~~~eI~~fIik~ILl~~~~~~~~~~~~ 786 (1675)
|+|+.+.+=....+.|+++|+-++... ...+..++++.+||-+.-. +..-+|+..=|--||+...+
T Consensus 220 LvAviNskfP~IgElLlkrLilqf~r~f~RnDk~~c~~~~kfiahLinq---~VahEIv~Leil~lLLe~PT-------- 288 (739)
T KOG2140|consen 220 LVAVINSKFPQIGELLLKRLILQFKRSFRRNDKVSCLNASKFIAHLINQ---QVAHEIVALEILTLLLERPT-------- 288 (739)
T ss_pred HHHHHccCCchHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCC--------
Confidence 334444432333445667776665322 2456667777777654211 11235555444445555332
Q ss_pred CCCchhhHHHHHHHHHHHHHhhcCCCccccccchHHHHHHHHHhhccCcCc
Q 000318 787 WDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMS 837 (1675)
Q Consensus 787 W~d~s~~~~aKi~aLK~Lvn~ll~~~~~~~~~~i~~ll~lL~~il~~GEl~ 837 (1675)
+++- ..-|..||.|...|.-++ ..+...+|.-|++|++.|||.
T Consensus 289 --ddSv--evaI~flkecGakL~~VS----pr~~n~IfErlR~ILhe~Eld 331 (739)
T KOG2140|consen 289 --DDSV--EVAIAFLKECGAKLAEVS----PRALNGIFERLRYILHEGELD 331 (739)
T ss_pred --CchH--HHHHHHHHHHHHHHHHhC----hHHHhHHHHHHHHHHhHhhHH
Confidence 1221 122445555555553322 235677899999999989876
No 217
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=20.27 E-value=1.3e+03 Score=27.56 Aligned_cols=100 Identities=18% Similarity=0.109 Sum_probs=63.8
Q ss_pred hHHHHHHHHHhhcchhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCCCC---CchhhcHHHHHHHHhcccCCChhHH
Q 000318 244 DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGS---ANNEQFHSVFSEFLKRLTDRIVAVR 320 (1675)
Q Consensus 244 ~~h~Li~eL~~~~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s---~~a~~y~~lw~~fL~R~~D~s~~VR 320 (1675)
+.+.+++.+..-.++.|...|-. ..-++=+|..|...|+.+...... ...+-|+.+++.++.|- ++.
T Consensus 100 ~l~~ilasv~~G~~~~L~~li~~-----~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~----~~~- 169 (249)
T PF06685_consen 100 DLPRILASVGDGDIEPLKELIED-----PDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERN----PSF- 169 (249)
T ss_pred HHHHHHHHHhCCCHHHHHHHHhC-----CcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccC----chH-
Confidence 46777887777777777765421 123577899999999988876431 24555666666666553 444
Q ss_pred HHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCch
Q 000318 321 MSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFD 355 (1675)
Q Consensus 321 ~~~Ve~~~~iL~~~p~~~~~~ei~~~L~~rL~D~D 355 (1675)
.|-..+..|+--+|. +...+|-+++..-|+|+.
T Consensus 170 -~~~~Lv~~~~dL~~~-EL~~~I~~~f~~~lVd~~ 202 (249)
T PF06685_consen 170 -LWGSLVADICDLYPE-ELLPEIRKAFEDGLVDPS 202 (249)
T ss_pred -HHHHHHHHHHhcCHH-HhHHHHHHHHHcCCCCcc
Confidence 666666665555553 334566667777777764
Done!