Query 000318
Match_columns 1675
No_of_seqs 281 out of 465
Neff 5.7
Searched_HMMs 29240
Date Tue Mar 26 16:00:19 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000318.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_98-102//hhsearch_pdb/000318hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b3u_A Protein (protein phosph 1.0 1 1 92.5 33.8 288 64-409 18-310 (588)
2 4fdd_A Transportin-1; heat rep 1.0 1 1 86.5 51.1 19 66-84 58-76 (852)
3 4fdd_A Transportin-1; heat rep 1.0 1 1 86.4 53.6 163 245-407 110-283 (852)
4 1b3u_A Protein (protein phosph 1.0 1 1 81.3 31.8 67 342-408 164-231 (588)
5 1qgr_A Protein (importin beta 1.0 1 1 79.6 54.2 226 626-867 582-831 (876)
6 2bpt_A Importin beta-1 subunit 1.0 1 1 79.4 51.9 682 68-865 53-813 (861)
7 1u6g_C TIP120 protein, CAND1; 1.0 1 1 78.6 46.9 47 850-901 947-994 (1230)
8 2bpt_A Importin beta-1 subunit 1.0 1 1 74.4 53.4 148 262-409 134-295 (861)
9 1u6g_C TIP120 protein, CAND1; 1.0 1 1 71.7 69.3 242 53-313 47-306 (1230)
10 2vgl_B AP-2 complex subunit be 1.0 1 1 69.3 34.3 127 624-758 298-426 (591)
No 1
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=92.52 Aligned_cols=288 Identities=14% Similarity=0.136 Sum_probs=111.6
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEECCCC
Q ss_conf 21488822068788888778641299999991589999999998216998889987146999999997431420001698
Q 000318 64 LLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLE 143 (1675)
Q Consensus 64 LL~HkD~~Vr~~vAcCLadIlRI~APdaPytd~qLkdIF~l~v~ql~~L~d~~~p~f~q~~~LLe~LA~vks~vl~~DL~ 143 (1675)
.|+|.|..+|..++-+|..|.+..-| +....++..++.... |. ++ .-+..+.+.|..+-. .+.
T Consensus 18 ~l~s~~~~~R~~A~~~l~~i~~~~~~-----~~~~~~l~~~L~~~~----d~-~~--~vr~~~~~~L~~~~~-----~~~ 80 (588)
T 1b3u_A 18 ELRNEDVQLRLNSIKKLSTIALALGV-----ERTRSELLPFLTDTI----YD-ED--EVLLALAEQLGTFTT-----LVG 80 (588)
T ss_dssp HTTCSCHHHHHHHHHTHHHHHHHSCH-----HHHHHTHHHHHHHTC----CC-CH--HHHHHHHHHHTTCSG-----GGT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHCH-----HHHHHHHHHHHHHHC----CC-CH--HHHHHHHHHHHHHHH-----CCC
T ss_conf 85062199999999719999998697-----989998998898755----78-58--999999999977876-----058
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHH-HHH---HHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 318999999999973249982519999999999996024455488-999---9999713798578999999999995454
Q 000318 144 CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQED-LLV---ILLSALGRNKNDTARRLAMNVIEQCAGK 219 (1675)
Q Consensus 144 ~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~iI~Ese~ip~~-vLd---~IL~~l~~~~~~~a~~lA~~ii~~~~dk 219 (1675)
..+....++..+..... +....|.......|..+.... |.+ +.. .++..+........+..|..++......
T Consensus 81 ~~~~~~~ll~~L~~l~~-~~~~~vR~~a~~~L~~l~~~~---~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~ 156 (588)
T 1b3u_A 81 GPEYVHCLLPPLESLAT-VEETVVRDKAVESLRAISHEH---SPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPR 156 (588)
T ss_dssp SGGGGGGGHHHHHHHTT-SSCHHHHHHHHHHHHHHHTTS---CHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 59899998999999874-760799999999999999979---99999999999999985077717999999999999985
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 47999999998305999998873037799999984064034311221201336775689999999999861599998210
Q 000318 220 LEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE 299 (1675)
Q Consensus 220 L~~~I~qyf~~il~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViPqLe~EL~sdd~~~Rl~At~llG~mfs~~~s~~a~ 299 (1675)
+.. .....++|.+..-+..++..+|..|.+.+|.+...-+.. .
T Consensus 157 ~~~-----------------------------------~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~ 199 (588)
T 1b3u_A 157 VSS-----------------------------------AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--N 199 (588)
T ss_dssp SCH-----------------------------------HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--H
T ss_pred CCH-----------------------------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHH--H
T ss_conf 699-----------------------------------999999999999848997889999999899999981677--6
Q ss_pred HCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-CCCCC
Q ss_conf 04999999982006999229999999958878219999986789999986607953689999999999964320-58889
Q 000318 300 QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-LNSIP 378 (1675)
Q Consensus 300 ~y~~~w~~fL~R~~Dks~~VR~~~V~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaVkai~~la~~~-l~~V~ 378 (1675)
..+.++..++.-.+|.++.||...+++...+....+.......+++.+...+.|.+++||.+++.+++.++... ...+.
T Consensus 200 ~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~ 279 (588)
T 1b3u_A 200 VKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK 279 (588)
T ss_dssp HHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 79999999998824992889998999999999857988888789999999806997789999999999999981952105
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 8889999976036893699999999999999
Q 000318 379 VETVKLVAERLRDKSVLVKRYTMERLADIFR 409 (1675)
Q Consensus 379 ~elL~~laeR~RDKK~~VRkeAi~~La~LY~ 409 (1675)
..++..+...+.|..+.||..|...|+.+..
T Consensus 280 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 310 (588)
T 1b3u_A 280 TDLVPAFQNLMKDCEAEVRAAASHKVKEFCE 310 (588)
T ss_dssp HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 5899999998589958999999987999999
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=86.53 Aligned_cols=19 Identities=16% Similarity=0.172 Sum_probs=8.2
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q ss_conf 4888220687888887786
Q 000318 66 KHQDKDVKLLVATCICEIT 84 (1675)
Q Consensus 66 ~HkD~~Vr~~vAcCLadIl 84 (1675)
.+.+..||.+.|..|-..+
T Consensus 58 ~~~~~~vR~~a~~~Lkn~i 76 (852)
T 4fdd_A 58 KSEDEPTRSLSGLILKNNV 76 (852)
T ss_dssp TTSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHH
T ss_conf 8898679999999999989
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=86.41 Aligned_cols=163 Identities=14% Similarity=0.147 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHC-CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHH-----HCHHHHHHHHHCCCCCCHH
Q ss_conf 779999998406-4034311221201336775689999999999861599998210-----0499999998200699922
Q 000318 245 YHEVIYDVYRCS-PQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE-----QFHSVFSEFLKRLTDRIVA 318 (1675)
Q Consensus 245 ~h~Li~eL~~~~-P~lL~~ViPqLe~EL~sdd~~~Rl~At~llG~mfs~~~s~~a~-----~y~~~w~~fL~R~~Dks~~ 318 (1675)
+-.++..|.+.. |.-....+|.|..-+.+.+..+|..|..+++.++...+..+.. ....++..++.-+.|.++.
T Consensus 110 ~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~ 189 (852)
T 4fdd_A 110 VGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPK 189 (852)
T ss_dssp HHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHH
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHHHHCCCCHH
T ss_conf 99999999986481356899999999870999899999999999999985787563431332999999999985679789
Q ss_pred HHHHHHHHHHHHHHCCCC--CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHHHHCCCC
Q ss_conf 999999995887821999--99867899999866079536899999999999643205888---9888999997603689
Q 000318 319 VRMSVLEHVKSCLLTDPS--RADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI---PVETVKLVAERLRDKS 393 (1675)
Q Consensus 319 VR~~~V~~~~~iL~~~p~--~~~~~ei~~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~V---~~elL~~laeR~RDKK 393 (1675)
||...+++...++...+. .....++++.|...+.|.|+.||.+++.+++.++......+ -..++..+...+.|..
T Consensus 190 vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~ 269 (852)
T 4fdd_A 190 IRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQD 269 (852)
T ss_dssp HHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999986463879988999999999871799778999999999999985779899889999999998706996
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 36999999999999
Q 000318 394 VLVKRYTMERLADI 407 (1675)
Q Consensus 394 ~~VRkeAi~~La~L 407 (1675)
..||..|++.+..+
T Consensus 270 ~~vr~~a~e~l~~l 283 (852)
T 4fdd_A 270 ENVALEACEFWLTL 283 (852)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 89999999999998
No 4
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=81.25 Aligned_cols=67 Identities=13% Similarity=0.102 Sum_probs=23.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 8999998660795368999999999996432058-889888999997603689369999999999999
Q 000318 342 QILTALCDRLLDFDENVRKQVVAVICDVACHALN-SIPVETVKLVAERLRDKSVLVKRYTMERLADIF 408 (1675)
Q Consensus 342 ei~~~L~~rL~D~DEkVR~aaVkai~~la~~~l~-~V~~elL~~laeR~RDKK~~VRkeAi~~La~LY 408 (1675)
++++.+...+.|+|..||.+++.+++.++..... .....++..+...+.|..+.||..|+..|+.+.
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~ 231 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIA 231 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999848997889999999899999981677679999999998824992889998999999999
No 5
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=79.64 Aligned_cols=226 Identities=11% Similarity=0.053 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHCC-CCCCCCHHHHHH----HHHHCC--CCCHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHCC
Q ss_conf 899999999985289-573444999999----975102--1004769999998603046532016622899999884059
Q 000318 626 QSCMDILGILARFSP-LLLGGTEEELVN----LLKEEN--EIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEG 698 (1675)
Q Consensus 626 ~~a~eLL~~IS~~~P-~lFk~~v~~Li~----lL~d~~--~~~~e~aLkiLak~~k~~~e~~~~~~s~l~~~L~~lal~G 698 (1675)
..+...|..+....+ .-|..+...++. ++.... ..+.+.++.++..+.......+.+.-..+.+.|.......
T Consensus 582 ~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 661 (876)
T 1qgr_A 582 SLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNY 661 (876)
T ss_dssp HHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999982854205789999999999998536888850899999999999987609999999999999987586
Q ss_pred -CHHHHHHHHHHHHHHCCCCCC---CHHHHHHHHHHHHHHHC--C--CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf -958899999999962078732---04999999999852105--9--983488999999933143314505789999998
Q 000318 699 -SRRQAKYAVHALAAITKDDGL---KSLSVLYKRLVDMLEEK--T--HLPAVLQSLGCIAQTAMPVFETRESEIEEFIKS 770 (1675)
Q Consensus 699 -tpkqAKyAVr~Laa~~~~~~~---~~~~~L~~~L~~~L~~~--~--~l~t~L~sLa~Iaq~aP~vfe~~~~eI~~fIik 770 (1675)
.+..-+.|+.+|..+...-+. .....++..+...|... . -....+.++|.|+...+..|......|...+.+
T Consensus 662 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~ 741 (876)
T 1qgr_A 662 AEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQ 741 (876)
T ss_dssp TTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_conf 50879999999999999988785464599999999997487123387639999999999997035279999999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC---------CCCCCCHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 3412567667888787778614678999999999995159876---------6643205889999999530376766778
Q 000318 771 KILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKD---------AHIRPGIDDLLGILKSMLSYGEMSEDIE 841 (1675)
Q Consensus 771 ~ILl~~~~~~~~~~~~W~d~se~~~aKi~aLK~Lvn~ll~~~~---------~~~~~~~~~ll~lL~~il~~GEl~~~~~ 841 (1675)
-+ ... . + .++++|.++ ....+...++++...+.+... ....+.+..++.++..+... +
T Consensus 742 ~~-~~~-~-~-~~d~~~~~~--~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-------~ 808 (876)
T 1qgr_A 742 AS-QAQ-V-D-KSDYDMVDY--LNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGD-------E 808 (876)
T ss_dssp HH-TCC-C-C-TTCHHHHHH--HHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTC-------S
T ss_pred HH-HCC-C-C-CCCHHHHHH--HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-------C
T ss_conf 98-555-8-9-997588999--99999999999999999974575555543889999999999999998658-------8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99566767579999999985310488
Q 000318 842 SSSVDKAHLRLASAKAVLRLSRQWDH 867 (1675)
Q Consensus 842 tp~~~ksrLRLaAa~alLKLAr~~d~ 867 (1675)
. .-...|-.|..++=.|+..+..
T Consensus 809 ~---~~~~vr~~a~~~l~~l~~~~~~ 831 (876)
T 1qgr_A 809 D---HTDGVVACAAGLIGDLCTAFGK 831 (876)
T ss_dssp C---CCHHHHHHHHHHHHHHHHHHCT
T ss_pred C---CCHHHHHHHHHHHHHHHHHHCC
T ss_conf 8---8889999999999999988284
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=79.43 Aligned_cols=682 Identities=12% Similarity=0.123 Sum_probs=289.9
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCC---------CC-CCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 88220687888887786412999---------99-991589999999998216998889987146999999997431420
Q 000318 68 QDKDVKLLVATCICEITRITAPE---------AP-YSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCV 137 (1675)
Q Consensus 68 kD~~Vr~~vAcCLadIlRI~APd---------aP-ytd~qLkdIF~l~v~ql~~L~d~~~p~f~q~~~LLe~LA~vks~v 137 (1675)
.+..||.+.|..|-..++-+-+. .. .++++...|-..++..+. +++ +. . +..+-..++.+-.
T Consensus 53 ~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~---~~~-~~-v-r~~~~~~l~~i~~-- 124 (861)
T 2bpt_A 53 TKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALV---SIE-PR-I-ANAAAQLIAAIAD-- 124 (861)
T ss_dssp SCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHT---CSS-HH-H-HHHHHHHHHHHHH--
T ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC---CCC-HH-H-HHHHHHHHHHHHH--
T ss_conf 98679999999987022575748789999767662999999999999999877---996-37-9-9999999999998--
Q ss_pred EECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC-------CCHHHHHHHHHHHCCCC-CHHHHHHH
Q ss_conf 00169831899999999997324998251999999999999602445-------54889999999713798-57899999
Q 000318 138 VMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESED-------IQEDLLVILLSALGRNK-NDTARRLA 209 (1675)
Q Consensus 138 l~~DL~~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~iI~Ese~-------ip~~vLd~IL~~l~~~~-~~~a~~lA 209 (1675)
.++|.. -..+++..++..+..+....+......++..+.++... .-..++..++..+.... +..-+..|
T Consensus 125 --~~~p~~-~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a 201 (861)
T 2bpt_A 125 --IELPHG-AWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAA 201 (861)
T ss_dssp --HHGGGT-CCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHH
T ss_pred --HHCCCC-CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf --467645-54999999999872689789999999999999972784356789889999999998415799987899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999954544799999999830599999887303779999998406403431122120133677568999999999986
Q 000318 210 MNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDL 289 (1675)
Q Consensus 210 ~~ii~~~~dkL~~~I~qyf~~il~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViPqLe~EL~sdd~~~Rl~At~llG~m 289 (1675)
.+.+..+...+. +.+.. ... | .. +++.|..-+.+++..+|..|.+.++++
T Consensus 202 l~~l~~~~~~~~--------~~~~~---------~~~------~----~~---ll~~l~~~~~~~~~~~r~~a~~~l~~l 251 (861)
T 2bpt_A 202 LNALADSLIFIK--------NNMER---------EGE------R----NY---LMQVVCEATQAEDIEVQAAAFGCLCKI 251 (861)
T ss_dssp HHHHHHHGGGCH--------HHHTS---------HHH------H----HH---HHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--------HHCCC---------HHH------H----HH---HHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 999999999999--------87067---------668------9----99---999999986599889999999999999
Q ss_pred HCCCCCCCHHHCH-HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC-------------CC--CC----CHHHHHHHHHH
Q ss_conf 1599998210049-99999982006999229999999958878219-------------99--99----86789999986
Q 000318 290 FAVPGSANNEQFH-SVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD-------------PS--RA----DAPQILTALCD 349 (1675)
Q Consensus 290 fs~~~s~~a~~y~-~~w~~fL~R~~Dks~~VR~~~V~~~~~iL~~~-------------p~--~~----~~~ei~~~L~~ 349 (1675)
....+..+....+ .+|..++....|.+..||...+++...+.... |. .. ....+++.+..
T Consensus 252 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~ 331 (861)
T 2bpt_A 252 MSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLN 331 (861)
T ss_dssp HHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99988999998899999999998737727899999999999998788643332103577325699999999889999999
Q ss_pred HHCCCH-------HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 607953-------6899999999999643205888988899999760368936999999999999998731014998520
Q 000318 350 RLLDFD-------ENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQ 422 (1675)
Q Consensus 350 rL~D~D-------EkVR~aaVkai~~la~~~l~~V~~elL~~laeR~RDKK~~VRkeAi~~La~LY~~~~~~~~~~~~~~ 422 (1675)
.+.+.| ..||.++..++..++......+-..++..+.+.+.|..+.+|..|+..|+.+-.. +.. ....
T Consensus 332 ~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~-~~~----~~~~ 406 (861)
T 2bpt_A 332 LLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDG-PDK----VQRT 406 (861)
T ss_dssp HTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS-SCH----HHHH
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC-CCH----HHHH
T ss_conf 98706653012468689999999999998740868999999999875799726999999999999859-987----8889
Q ss_pred HCCCCCHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHH-H--HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 001662588863320277885048998420686999997999999-9--9998129999999999999999999999999
Q 000318 423 NEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRH-W--VRIFSGFDRIEMKALEKILEQKQRLQQEMQR 499 (1675)
Q Consensus 423 ~~~~wIP~~IL~~~Y~~d~~~~lVE~vl~e~LlP~~~~~~~R~~~-l--l~l~~~LD~~~~kal~~il~~k~~l~~~~~~ 499 (1675)
..+..|-..++..+. | .++.-|... | ..+...+.+. + .....+...+..
T Consensus 407 ~~l~~il~~l~~~l~--d------------------~~~~vr~~a~~~l~~l~~~~~~~-------~-~~~~~~~~~l~~ 458 (861)
T 2bpt_A 407 YYVHQALPSILNLMN--D------------------QSLQVKETTAWCIGRIADSVAES-------I-DPQQHLPGVVQA 458 (861)
T ss_dssp HHHHHHHHHHHHGGG--C------------------SCHHHHHHHHHHHHHHHHHHGGG-------S-CTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHCC--C------------------CCHHHHHHHHHHHHHHHHHHHHH-------C-CCHHHHHHHHHH
T ss_conf 989999999998828--9------------------95999999999999999873540-------4-878889999999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHCCHHHHHHHHHHHC-CC--CCHH-HHHHHHH
Q ss_conf 999986513899289999999999998752399--3578899999884100889999999736-79--9999-9999999
Q 000318 500 YLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAE--PAKAEENFLILDQLKDANVWKILMNLLD-SN--TSFD-QAFTGRD 573 (1675)
Q Consensus 500 ~l~l~~~~~~~d~~ei~~kL~~~i~~Ls~~fPD--p~Ka~~~L~kf~klnD~Ri~kLLk~~id-p~--ts~~-tv~~a~k 573 (1675)
++... + +.+.+.......+..++..+++ +......+ ..++..|..+++ ++ ...+ .+..+..
T Consensus 459 l~~~l---~--~~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--------~~il~~L~~~l~~~d~~~~vr~~a~~al~ 525 (861)
T 2bpt_A 459 CLIGL---Q--DHPKVATNCSWTIINLVEQLAEATPSPIYNFY--------PALVDGLIGAANRIDNEFNARASAFSALT 525 (861)
T ss_dssp HHHHH---T--SCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--------HHHHHHHHHHHTCSCCGGGHHHHHHHHHH
T ss_pred HHHHH---C--CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH--------HHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99976---4--47289999999999999862313542468999--------99999999998575861589999999999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC-------C----CCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999558976599999999862002557668999999999610-------4----300465889999999998528957
Q 000318 574 DLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQK-------S----SANAQFMQSCMDILGILARFSPLL 642 (1675)
Q Consensus 574 eLlkkL~~k~~l~d~l~~Ll~R~S~lifNks~V~~LL~~v~~s~-------~----~~~~~~~~~a~eLL~~IS~~~P~l 642 (1675)
.+....+.. ...++.. -++.++..+.... . +........+.+.|..+....+.-
T Consensus 526 ~l~~~~~~~--~~~~~~~-------------l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 590 (861)
T 2bpt_A 526 TMVEYATDT--VAETSAS-------------ISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSS 590 (861)
T ss_dssp HHHHHCCGG--GHHHHHH-------------HHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHCCHH--HHHHHHH-------------HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999976265--6999999-------------9999999999887532013885567779999999999999999985563
Q ss_pred CCCCHHHHHHH----HHHCCC-CCHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 34449999999----751021-0047699999986030465320166228999998840599588999999999620787
Q 000318 643 LGGTEEELVNL----LKEENE-IIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDD 717 (1675)
Q Consensus 643 Fk~~v~~Li~l----L~d~~~-~~~e~aLkiLak~~k~~~e~~~~~~s~l~~~L~~lal~GtpkqAKyAVr~Laa~~~~~ 717 (1675)
+..+...++.. +...+. .+.+.++.++........+.+.+.-..+.+.|.+......+.....|+.++..+...-
T Consensus 591 ~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~ 670 (861)
T 2bpt_A 591 VEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSL 670 (861)
T ss_dssp TGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 47899999999999974678875799999999999999766099999999999998865566789999999999999874
Q ss_pred CC---CHHHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 32---04999999999852105----998348899999993314331450578999999834125676678887877786
Q 000318 718 GL---KSLSVLYKRLVDMLEEK----THLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDR 790 (1675)
Q Consensus 718 ~~---~~~~~L~~~L~~~L~~~----~~l~t~L~sLa~Iaq~aP~vfe~~~~eI~~fIik~ILl~~~~~~~~~~~~W~d~ 790 (1675)
+. ..+..++..+...+... .--.+.+.+||.|++..+..|......|...++.-+-... +. ++.++.
T Consensus 671 ~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~---~~-~d~d~~-- 744 (861)
T 2bpt_A 671 EEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKP---EN-GTLEAL-- 744 (861)
T ss_dssp GGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCC---SS-SSHHHH--
T ss_pred CHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CC-CCHHHH--
T ss_conf 540311199999999997278655676659999999999998405089999999999999973678---99-975889--
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCC--CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 14678999999999995159876--6643205889999999530376766778995667675799999999853104
Q 000318 791 SELCLLKIYGIKTLVKSYLPVKD--AHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQW 865 (1675)
Q Consensus 791 se~~~aKi~aLK~Lvn~ll~~~~--~~~~~~~~~ll~lL~~il~~GEl~~~~~tp~~~ksrLRLaAa~alLKLAr~~ 865 (1675)
......+..+++++...+....+ ....+.+..++.+|...+...+ ..+...+|.+|..++-.|++.+
T Consensus 745 ~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~--------~~~~~~vr~~a~~~l~~l~~~~ 813 (861)
T 2bpt_A 745 DYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQ--------LYSEDATSRAAVGLIGDIAAMF 813 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHH--------HHTSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC--------CCCCHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999999826778899999999999999874855--------5786999999999999999882
No 7
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=78.63 Aligned_cols=47 Identities=15% Similarity=0.078 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 5799999999853104-887788999998312467726699999999998673
Q 000318 850 LRLASAKAVLRLSRQW-DHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVK 901 (1675)
Q Consensus 850 LRLaAa~alLKLAr~~-d~~I~~d~f~l~~l~~qD~~~~VR~~Fl~KL~kyL~ 901 (1675)
+|-.++.++=+|+... +.++| .+. ....++...+|...+.-+...+.
T Consensus 947 ~r~~~a~~lg~l~~~~~~~l~p----~l~-~~l~~~~~~~R~~~~~~l~~~~~ 994 (1230)
T 1u6g_C 947 TRNVVAECLGKLTLIDPETLLP----RLK-GYLISGSSYARSSVVTAVKFTIS 994 (1230)
T ss_dssp HHHHHHHHHHHHHHSSGGGTHH----HHT-TTSSSSCHHHHHHHHHHTGGGCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHH----HHH-HHHCCCCHHHHHHHHHHHHHHHC
T ss_conf 6899998875665067688889----999-98569978899999999999970
No 8
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=74.36 Aligned_cols=148 Identities=11% Similarity=0.183 Sum_probs=60.9
Q ss_pred HHHHHHCCCCCCC-CHHHHHHHHHHHHHHHCCCCCC---CHHHCHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHHHC--
Q ss_conf 1122120133677-5689999999999861599998---2100499999998200699--922999999995887821--
Q 000318 262 GVVPYLTGELLTD-QLDTRLKAVGLVGDLFAVPGSA---NNEQFHSVFSEFLKRLTDR--IVAVRMSVLEHVKSCLLT-- 333 (1675)
Q Consensus 262 ~ViPqLe~EL~sd-d~~~Rl~At~llG~mfs~~~s~---~a~~y~~~w~~fL~R~~Dk--s~~VR~~~V~~~~~iL~~-- 333 (1675)
.++|.|..-+.++ +..+|..|..+++.++..-+.. +....+.++..|+....|. ++.||...+++...++..
T Consensus 134 ~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~ 213 (861)
T 2bpt_A 134 ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIK 213 (861)
T ss_dssp HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999872689789999999999999972784356789889999999998415799987899999999999999999
Q ss_pred -CCCCC-CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCH----HHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf -99999-86789999986607953689999999999964320588898----8899999760368936999999999999
Q 000318 334 -DPSRA-DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV----ETVKLVAERLRDKSVLVKRYTMERLADI 407 (1675)
Q Consensus 334 -~p~~~-~~~ei~~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~V~~----elL~~laeR~RDKK~~VRkeAi~~La~L 407 (1675)
+.... ....++..|...+.|.|++||.+++.++..++......+.. .++..+...+.|....||..|+..+..+
T Consensus 214 ~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l 293 (861)
T 2bpt_A 214 NNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTI 293 (861)
T ss_dssp HHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 87067668999999999986599889999999999999999889999988999999999987377278999999999999
Q ss_pred HH
Q ss_conf 99
Q 000318 408 FR 409 (1675)
Q Consensus 408 Y~ 409 (1675)
..
T Consensus 294 ~~ 295 (861)
T 2bpt_A 294 CE 295 (861)
T ss_dssp HH
T ss_pred HH
T ss_conf 98
No 9
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=71.74 Aligned_cols=242 Identities=14% Similarity=0.161 Sum_probs=117.1
Q ss_pred HHHHHHHCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999841132214888220687888887786412999999915899999999982169988899871469999999974
Q 000318 53 QPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAK 132 (1675)
Q Consensus 53 ~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~APdaPytd~qLkdIF~l~v~ql~~L~d~~~p~f~q~~~LLe~LA~ 132 (1675)
..+...|+. .|.+++..||..++-||..+..-+.+ .++..|+..++..+ .|++.. . +......|+.
T Consensus 47 ~~il~~Ll~--~L~d~~~~vR~~A~~~L~~l~~~~~~------~~~~~i~~~Ll~~l---~d~~~~--v-R~~a~~~L~~ 112 (1230)
T 1u6g_C 47 RKVVKMILK--LLEDKNGEVQNLAVKCLGPLVSKVKE------YQVETIVDTLCTNM---LSDKEQ--L-RDISSIGLKT 112 (1230)
T ss_dssp HHHHHHHHH--HTTCSSHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHHHHT---TCSSSH--H-HHHHHHHHHH
T ss_pred HHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHH---CCCCHH--H-HHHHHHHHHH
T ss_conf 999999999--86699989999999999999975879------89999999999986---698388--9-9999999999
Q ss_pred HHHHHEECCCC------CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC-C---CHHHHHHHHHHHCCCCC
Q ss_conf 31420001698------31899999999997324998251999999999999602445-5---48899999997137985
Q 000318 133 YRSCVVMLDLE------CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESED-I---QEDLLVILLSALGRNKN 202 (1675)
Q Consensus 133 vks~vl~~DL~------~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~iI~Ese~-i---p~~vLd~IL~~l~~~~~ 202 (1675)
+-.. +.-+ ......+++..++....++....+......++..+++.... + -..++..++..+... .
T Consensus 113 i~~~---l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~-~ 188 (1230)
T 1u6g_C 113 VIGE---LPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSP-R 188 (1230)
T ss_dssp HHHH---CC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCS-S
T ss_pred HHHH---CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-C
T ss_conf 9996---79744444117889999999999987578846799999999999999827677887999999999987599-6
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHH----HHHHHHHHCCCCCCC
Q ss_conf 7899999999999545447----99999999830599999887303779999998406403----431122120133677
Q 000318 203 DTARRLAMNVIEQCAGKLE----AGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQI----LSGVVPYLTGELLTD 274 (1675)
Q Consensus 203 ~~a~~lA~~ii~~~~dkL~----~~I~qyf~~il~~d~~~~~~~~~~h~Li~eL~~~~P~l----L~~ViPqLe~EL~sd 274 (1675)
..-+.-|...+...+..+. +.+-.++...+..+.. ......+.+.+..|.+..|.. +..++|.+-.-+..+
T Consensus 189 ~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~-~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~ 267 (1230)
T 1u6g_C 189 LAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDS-MSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVD 267 (1230)
T ss_dssp HHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCS-SCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 899999999999999856899999999999998616775-5689999999999999868989988999999999986689
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHCCC
Q ss_conf 568999999999986159999821004999999982006
Q 000318 275 QLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLT 313 (1675)
Q Consensus 275 d~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~ 313 (1675)
+..+|..|...++.+...-+..+..-.+.+...++....
T Consensus 268 ~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~ 306 (1230)
T 1u6g_C 268 DDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLT 306 (1230)
T ss_dssp CTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_conf 778999999999999997848777768999999999827
No 10
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=1.00 E-value=1 Score=69.33 Aligned_cols=127 Identities=13% Similarity=0.138 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf 58899999999985289573444999999975102100476999999860304653201662289999988405995889
Q 000318 624 FMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQA 703 (1675)
Q Consensus 624 ~~~~a~eLL~~IS~~~P~lFk~~v~~Li~lL~d~~~~~~e~aLkiLak~~k~~~e~~~~~~s~l~~~L~~lal~GtpkqA 703 (1675)
..-.+++-|..|...+|.+|..+...+.... +++..+...+|.+|++.+.. ++. ..+...|..+.....+.-.
T Consensus 298 vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~-~d~~~Ir~~al~~L~~l~~~--~nv----~~iv~~L~~~l~~~d~~~r 370 (591)
T 2vgl_B 298 VQYVALRNINLIVQKRPEILKQEIKVFFVKY-NDPIYVKLEKLDIMIRLASQ--ANI----AQVLAELKEYATEVDVDFV 370 (591)
T ss_dssp HHHHHHHHHHHHHHHCCSTTTTCTTTTSCCT-TSCHHHHHHHHHHHHHTCCS--STH----HHHHHHHHHHTTSSCHHHH
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHEECC-CCHHHHHHHHHHHHHHHCCH--HHH----HHHHHHHHHHHHCCCHHHH
T ss_conf 8999999999999869698999887550036-99399999999999987786--239----9999999999865799999
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999620787320499999999985210599--83488999999933143314
Q 000318 704 KYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTH--LPAVLQSLGCIAQTAMPVFE 758 (1675)
Q Consensus 704 KyAVr~Laa~~~~~~~~~~~~L~~~L~~~L~~~~~--l~t~L~sLa~Iaq~aP~vfe 758 (1675)
+.|+++|+.+...-. .....++..|++.+..... ....+.++..|.+..|...+
T Consensus 371 ~~~v~aI~~la~~~~-~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~ 426 (591)
T 2vgl_B 371 RKAVRAIGRCAIKVE-QSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYE 426 (591)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCC
T ss_pred HHHHHHHHHHHHHCH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 999999999998574-67999999999998355168999999999999997920578
Done!