Query 000319
Match_columns 1674
No_of_seqs 288 out of 462
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 04:11:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000319.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000319hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1525 Sister chromatid cohes 100.0 2E-134 5E-139 1307.3 82.1 1063 10-1099 6-1118(1266)
2 KOG1525 Sister chromatid cohes 99.7 6.5E-14 1.4E-18 185.6 47.1 490 636-1248 583-1087(1266)
3 PF09465 LBR_tudor: Lamin-B re 99.0 1.1E-09 2.3E-14 95.8 6.4 44 1375-1418 7-50 (55)
4 PTZ00429 beta-adaptin; Provisi 98.7 5.3E-05 1.1E-09 99.4 37.5 392 265-751 39-437 (746)
5 KOG2171 Karyopherin (importin) 98.6 0.00049 1.1E-08 90.9 42.0 532 240-851 23-595 (1075)
6 KOG1824 TATA-binding protein-i 98.4 0.011 2.3E-07 76.9 47.3 363 21-408 24-467 (1233)
7 KOG1020 Sister chromatid cohes 98.3 0.011 2.5E-07 79.9 43.2 135 293-439 810-945 (1692)
8 PTZ00429 beta-adaptin; Provisi 98.2 0.0029 6.3E-08 83.5 37.5 337 242-668 89-431 (746)
9 PF01602 Adaptin_N: Adaptin N 98.0 0.0015 3.2E-08 83.1 27.7 117 241-365 62-179 (526)
10 KOG1020 Sister chromatid cohes 97.9 0.08 1.7E-06 72.2 40.1 206 201-410 753-965 (1692)
11 KOG2171 Karyopherin (importin) 97.7 0.47 1E-05 64.0 68.7 277 62-367 86-418 (1075)
12 PRK09687 putative lyase; Provi 97.5 0.0005 1.1E-08 81.2 11.8 145 242-403 41-186 (280)
13 KOG1060 Vesicle coat complex A 97.5 0.05 1.1E-06 70.0 28.9 390 267-730 44-439 (968)
14 PF01602 Adaptin_N: Adaptin N 97.5 0.095 2.1E-06 66.8 32.3 239 240-529 133-374 (526)
15 PRK09687 putative lyase; Provi 97.4 0.0014 2.9E-08 77.7 12.6 129 258-403 90-219 (280)
16 KOG1062 Vesicle coat complex A 97.3 0.2 4.3E-06 65.0 31.1 353 256-710 105-469 (866)
17 PRK13800 putative oxidoreducta 97.2 0.027 5.9E-07 76.8 24.1 262 63-401 628-895 (897)
18 KOG0414 Chromosome condensatio 97.1 2.6 5.7E-05 57.3 60.8 437 241-728 295-797 (1251)
19 PF12717 Cnd1: non-SMC mitotic 97.0 0.024 5.2E-07 62.7 16.7 94 312-407 1-94 (178)
20 KOG1824 TATA-binding protein-i 97.0 0.69 1.5E-05 61.1 30.9 540 200-765 454-1054(1233)
21 smart00333 TUDOR Tudor domain. 96.9 0.0016 3.4E-08 58.3 5.6 44 1375-1420 4-48 (57)
22 KOG2025 Chromosome condensatio 96.8 2.8 6.1E-05 54.3 35.1 126 266-402 93-219 (892)
23 KOG1248 Uncharacterized conser 96.8 4.3 9.3E-05 55.5 49.6 226 52-287 222-456 (1176)
24 cd04508 TUDOR Tudor domains ar 96.7 0.0034 7.4E-08 54.2 5.4 43 1377-1420 1-44 (48)
25 smart00743 Agenet Tudor-like d 96.6 0.0032 6.9E-08 57.4 5.5 36 1375-1411 4-39 (61)
26 PF13646 HEAT_2: HEAT repeats; 96.6 0.011 2.4E-07 56.7 9.5 83 304-401 4-88 (88)
27 KOG1060 Vesicle coat complex A 96.6 1.6 3.5E-05 56.9 30.1 161 241-410 91-251 (968)
28 KOG0212 Uncharacterized conser 96.5 4.2 9.1E-05 51.7 38.3 408 203-640 26-487 (675)
29 KOG1242 Protein containing ada 96.5 0.94 2E-05 57.9 27.0 231 298-578 215-449 (569)
30 PLN03200 cellulose synthase-in 96.5 5.1 0.00011 58.6 36.8 373 311-748 416-812 (2102)
31 PRK13800 putative oxidoreducta 96.4 0.015 3.2E-07 79.4 12.2 120 259-403 622-741 (897)
32 PF10508 Proteasom_PSMB: Prote 96.3 1.9 4.2E-05 55.5 29.0 141 259-400 120-267 (503)
33 PF10508 Proteasom_PSMB: Prote 96.2 0.36 7.9E-06 62.0 22.4 242 160-406 90-367 (503)
34 KOG2023 Nuclear transport rece 96.0 1.8 4E-05 55.5 25.5 369 241-647 378-789 (885)
35 PF14500 MMS19_N: Dos2-interac 96.0 0.43 9.2E-06 56.3 19.4 230 63-304 6-255 (262)
36 PF12348 CLASP_N: CLASP N term 95.8 0.085 1.8E-06 60.1 12.4 144 261-407 56-208 (228)
37 PF13646 HEAT_2: HEAT repeats; 95.3 0.053 1.2E-06 52.0 7.2 86 260-363 1-88 (88)
38 KOG1949 Uncharacterized conser 95.2 1.1 2.3E-05 57.8 19.7 100 262-365 224-329 (1005)
39 COG5218 YCG1 Chromosome conden 95.2 12 0.00027 47.8 28.0 256 266-554 99-371 (885)
40 KOG1061 Vesicle coat complex A 95.0 4.1 8.9E-05 53.5 24.4 376 258-671 13-416 (734)
41 KOG0413 Uncharacterized conser 94.8 11 0.00025 50.4 27.4 136 270-408 337-504 (1529)
42 KOG1949 Uncharacterized conser 94.7 3.5 7.5E-05 53.4 22.2 188 261-458 177-377 (1005)
43 PF12348 CLASP_N: CLASP N term 94.5 0.85 1.8E-05 52.0 15.5 98 265-367 101-206 (228)
44 KOG2023 Nuclear transport rece 94.5 0.45 9.8E-06 60.7 13.9 183 162-378 105-293 (885)
45 PF12719 Cnd3: Nuclear condens 94.3 0.46 9.9E-06 56.9 13.4 97 267-367 36-143 (298)
46 COG5096 Vesicle coat complex, 94.3 12 0.00027 50.0 26.8 129 267-406 28-157 (757)
47 PF09038 53-BP1_Tudor: Tumour 94.3 0.079 1.7E-06 54.6 5.7 46 1372-1418 1-46 (122)
48 KOG4675 Uncharacterized conser 94.3 0.026 5.5E-07 65.3 2.4 67 1366-1432 151-225 (273)
49 PF12460 MMS19_C: RNAPII trans 94.2 11 0.00024 47.5 25.6 295 69-375 56-402 (415)
50 KOG0414 Chromosome condensatio 94.0 0.77 1.7E-05 62.1 15.3 151 240-396 896-1055(1251)
51 cd00020 ARM Armadillo/beta-cat 93.8 0.078 1.7E-06 53.0 4.8 106 259-364 8-117 (120)
52 KOG0213 Splicing factor 3b, su 93.5 9.2 0.0002 50.0 22.5 63 264-326 722-826 (1172)
53 PF12755 Vac14_Fab1_bd: Vacuol 93.4 0.2 4.4E-06 50.3 6.8 66 337-403 26-94 (97)
54 KOG2011 Sister chromatid cohes 93.3 1.7 3.6E-05 59.1 16.8 126 303-439 291-422 (1048)
55 PF12717 Cnd1: non-SMC mitotic 93.2 1 2.2E-05 49.9 12.6 83 244-329 11-93 (178)
56 PLN03200 cellulose synthase-in 92.8 79 0.0017 47.2 34.6 141 261-405 407-559 (2102)
57 KOG0915 Uncharacterized conser 92.8 63 0.0014 46.1 33.7 366 9-407 725-1162(1702)
58 KOG2025 Chromosome condensatio 92.7 44 0.00096 44.1 30.1 53 140-193 79-131 (892)
59 COG5098 Chromosome condensatio 92.7 3.3 7.3E-05 53.3 17.0 107 301-407 301-417 (1128)
60 COG5096 Vesicle coat complex, 92.6 14 0.0003 49.6 23.3 103 300-406 93-196 (757)
61 COG5240 SEC21 Vesicle coat com 92.0 9.7 0.00021 48.6 19.5 157 241-402 210-366 (898)
62 KOG1062 Vesicle coat complex A 91.9 8 0.00017 51.1 19.4 235 63-367 149-414 (866)
63 PF02985 HEAT: HEAT repeat; I 91.5 0.26 5.7E-06 39.0 3.9 29 339-367 1-29 (31)
64 PF12719 Cnd3: Nuclear condens 90.8 11 0.00024 45.3 18.6 106 299-406 26-144 (298)
65 KOG1078 Vesicle coat complex C 90.7 5.7 0.00012 52.2 16.4 258 63-361 252-526 (865)
66 PF05804 KAP: Kinesin-associat 90.5 9.9 0.00022 50.8 19.0 177 640-827 289-478 (708)
67 PF13513 HEAT_EZ: HEAT-like re 90.4 0.17 3.7E-06 44.8 2.1 52 313-364 1-54 (55)
68 cd00020 ARM Armadillo/beta-cat 90.2 0.49 1.1E-05 47.2 5.5 100 304-403 12-118 (120)
69 PF01347 Vitellogenin_N: Lipop 90.0 3.5 7.6E-05 54.2 14.6 128 252-400 480-617 (618)
70 PF13001 Ecm29: Proteasome sta 90.0 12 0.00026 48.4 19.0 214 137-380 267-499 (501)
71 PF10363 DUF2435: Protein of u 89.8 2.4 5.1E-05 42.4 9.7 87 298-388 2-89 (92)
72 COG5240 SEC21 Vesicle coat com 89.7 74 0.0016 41.1 30.3 51 620-670 319-369 (898)
73 PF06003 SMN: Survival motor n 89.2 0.67 1.5E-05 54.8 6.4 50 1372-1421 67-117 (264)
74 KOG2259 Uncharacterized conser 89.0 0.66 1.4E-05 59.3 6.3 97 302-402 376-472 (823)
75 KOG2011 Sister chromatid cohes 88.7 29 0.00064 47.9 21.3 257 138-408 138-439 (1048)
76 PF12755 Vac14_Fab1_bd: Vacuol 88.4 1 2.2E-05 45.5 6.1 84 275-358 3-88 (97)
77 KOG2259 Uncharacterized conser 88.4 2.6 5.6E-05 54.3 10.8 113 292-407 191-312 (823)
78 KOG1242 Protein containing ada 88.1 11 0.00025 48.5 16.3 234 160-407 155-403 (569)
79 PF13513 HEAT_EZ: HEAT-like re 88.1 0.44 9.6E-06 42.2 3.0 52 352-403 1-55 (55)
80 PF12231 Rif1_N: Rap1-interact 87.7 84 0.0018 39.2 25.3 317 66-407 3-354 (372)
81 KOG2956 CLIP-associating prote 87.7 4.5 9.7E-05 50.6 12.0 154 269-431 341-498 (516)
82 COG5098 Chromosome condensatio 87.5 36 0.00078 44.6 19.7 138 240-377 281-426 (1128)
83 PF12765 Cohesin_HEAT: HEAT re 87.2 0.75 1.6E-05 39.3 3.7 39 323-361 3-41 (42)
84 KOG1820 Microtubule-associated 87.2 6.7 0.00015 53.0 14.2 150 254-407 249-445 (815)
85 TIGR02270 conserved hypothetic 86.6 4.2 9E-05 51.1 11.3 54 342-402 151-204 (410)
86 TIGR02270 conserved hypothetic 83.1 12 0.00026 47.2 13.1 135 240-405 42-176 (410)
87 smart00638 LPD_N Lipoprotein N 82.7 37 0.00081 44.5 18.0 144 250-403 389-543 (574)
88 COG1413 FOG: HEAT repeat [Ener 82.0 9.1 0.0002 46.3 11.3 135 245-405 95-242 (335)
89 KOG0915 Uncharacterized conser 81.6 1.7E+02 0.0037 42.1 23.3 63 47-110 1123-1186(1702)
90 PF12074 DUF3554: Domain of un 80.1 65 0.0014 39.4 17.8 204 143-351 19-257 (339)
91 COG5218 YCG1 Chromosome conden 79.7 2.1E+02 0.0046 37.5 30.4 259 23-366 3-265 (885)
92 KOG1967 DNA repair/transcripti 79.4 8.3 0.00018 51.6 10.0 149 257-405 866-1024(1030)
93 COG5181 HSH155 U2 snRNP splice 79.4 54 0.0012 42.6 16.4 299 53-363 599-943 (975)
94 KOG0413 Uncharacterized conser 79.2 24 0.00052 47.6 13.8 132 270-406 943-1074(1529)
95 KOG1943 Beta-tubulin folding c 79.2 2.9E+02 0.0062 38.8 31.4 180 200-409 514-709 (1133)
96 PF11864 DUF3384: Domain of un 78.9 1.9E+02 0.0041 37.3 22.0 166 112-287 147-330 (464)
97 KOG1058 Vesicle coat complex C 77.9 50 0.0011 43.9 15.9 99 254-364 317-422 (948)
98 PF03378 CAS_CSE1: CAS/CSE pro 77.1 19 0.00042 45.7 12.2 193 74-289 44-255 (435)
99 KOG0392 SNF2 family DNA-depend 76.5 22 0.00047 49.3 12.7 137 237-378 792-944 (1549)
100 KOG1243 Protein kinase [Genera 76.3 7.7 0.00017 50.7 8.4 108 297-404 327-436 (690)
101 PF14676 FANCI_S2: FANCI solen 75.7 3.1 6.7E-05 45.7 4.1 120 242-364 39-158 (158)
102 COG1413 FOG: HEAT repeat [Ener 75.6 17 0.00038 43.9 11.0 30 377-406 181-210 (335)
103 COG5537 IRR1 Cohesin [Cell div 73.5 4.8 0.0001 51.5 5.5 104 298-405 273-386 (740)
104 KOG1059 Vesicle coat complex A 73.3 3.4E+02 0.0073 36.6 34.8 111 253-371 104-214 (877)
105 KOG1240 Protein kinase contain 72.7 29 0.00062 48.1 12.3 156 238-394 440-635 (1431)
106 KOG2038 CAATT-binding transcri 72.4 3.6E+02 0.0078 36.6 21.9 59 309-369 314-372 (988)
107 KOG0368 Acetyl-CoA carboxylase 72.3 1.9E+02 0.0042 41.5 19.6 228 100-340 765-1022(2196)
108 KOG2213 Apoptosis inhibitor 5/ 71.8 1.8E+02 0.004 36.4 17.7 229 296-565 22-278 (460)
109 KOG2051 Nonsense-mediated mRNA 71.7 24 0.00052 48.2 11.4 91 241-332 481-578 (1128)
110 KOG1059 Vesicle coat complex A 70.9 47 0.001 44.0 13.2 164 240-404 163-364 (877)
111 PF12765 Cohesin_HEAT: HEAT re 70.3 5.4 0.00012 34.2 3.5 39 362-400 3-42 (42)
112 KOG1967 DNA repair/transcripti 69.1 1.4E+02 0.0031 40.9 17.1 141 221-362 862-1019(1030)
113 KOG0166 Karyopherin (importin) 69.1 12 0.00026 48.0 7.6 141 258-402 152-305 (514)
114 KOG1240 Protein kinase contain 68.9 3.6E+02 0.0079 38.3 21.0 131 272-407 592-727 (1431)
115 COG5181 HSH155 U2 snRNP splice 68.7 2.6E+02 0.0056 36.9 18.5 260 142-407 395-719 (975)
116 PF01347 Vitellogenin_N: Lipop 68.7 54 0.0012 43.3 14.0 187 185-402 380-586 (618)
117 PF02985 HEAT: HEAT repeat; I 68.4 9.1 0.0002 30.3 4.2 29 378-406 2-30 (31)
118 PF04826 Arm_2: Armadillo-like 67.8 1.5E+02 0.0033 35.2 15.9 106 254-359 130-254 (254)
119 KOG0166 Karyopherin (importin) 67.6 3.8E+02 0.0083 35.0 24.0 168 264-438 72-252 (514)
120 PF10363 DUF2435: Protein of u 65.9 21 0.00046 35.8 7.2 83 265-353 10-92 (92)
121 smart00638 LPD_N Lipoprotein N 65.1 82 0.0018 41.4 14.5 143 200-359 420-570 (574)
122 PF05804 KAP: Kinesin-associat 63.5 5.3E+02 0.011 35.3 21.3 164 541-711 464-649 (708)
123 KOG1991 Nuclear transport rece 63.5 5.8E+02 0.013 35.6 44.2 296 160-474 102-495 (1010)
124 PF05004 IFRD: Interferon-rela 63.4 1.3E+02 0.0029 36.6 14.8 150 259-408 87-260 (309)
125 KOG0211 Protein phosphatase 2A 63.1 5.6E+02 0.012 35.3 21.8 151 255-407 395-549 (759)
126 KOG1992 Nuclear export recepto 62.9 1.1E+02 0.0025 41.2 14.5 152 73-229 565-733 (960)
127 KOG1058 Vesicle coat complex C 62.3 5.5E+02 0.012 34.9 29.9 144 252-407 14-165 (948)
128 PF05004 IFRD: Interferon-rela 62.1 1.6E+02 0.0036 35.8 15.2 67 644-710 46-114 (309)
129 PF05641 Agenet: Agenet domain 61.9 13 0.00029 34.9 4.7 35 1376-1411 3-40 (68)
130 PF08167 RIX1: rRNA processing 60.5 62 0.0013 35.7 10.4 139 598-767 19-163 (165)
131 PF15057 DUF4537: Domain of un 59.8 18 0.00039 38.2 5.7 42 1377-1419 1-42 (124)
132 PF05327 RRN3: RNA polymerase 58.7 92 0.002 41.1 13.2 190 96-319 29-221 (563)
133 PF13251 DUF4042: Domain of un 57.3 1.1E+02 0.0023 34.7 11.6 130 274-406 2-175 (182)
134 PF00567 TUDOR: Tudor domain; 57.0 23 0.0005 35.4 5.9 48 1372-1420 50-98 (121)
135 KOG0644 Uncharacterized conser 55.2 13 0.00027 49.4 4.3 46 1374-1419 979-1036(1113)
136 PF05918 API5: Apoptosis inhib 55.1 1.1E+02 0.0023 40.3 12.5 122 599-726 19-140 (556)
137 PF05918 API5: Apoptosis inhib 53.9 1.4E+02 0.003 39.3 13.2 83 270-359 34-116 (556)
138 PF12530 DUF3730: Protein of u 53.4 3.5E+02 0.0077 31.5 15.5 129 621-752 55-190 (234)
139 PF12830 Nipped-B_C: Sister ch 52.9 53 0.0012 36.9 8.4 70 337-407 7-76 (187)
140 KOG2393 Transcription initiati 51.8 33 0.00071 43.9 7.0 24 1568-1592 292-315 (555)
141 KOG1991 Nuclear transport rece 51.4 8.9E+02 0.019 34.0 24.5 86 244-332 445-536 (1010)
142 KOG0211 Protein phosphatase 2A 51.2 3.3E+02 0.0072 37.3 16.4 139 257-397 275-419 (759)
143 PF11717 Tudor-knot: RNA bindi 50.1 39 0.00084 30.6 5.5 43 1376-1419 3-50 (55)
144 KOG2933 Uncharacterized conser 50.0 86 0.0019 38.1 9.7 162 240-406 107-278 (334)
145 PF14500 MMS19_N: Dos2-interac 47.7 5.6E+02 0.012 30.6 23.1 63 341-405 2-69 (262)
146 PF14228 MOR2-PAG1_mid: Cell m 47.4 1.1E+03 0.024 34.0 28.0 125 274-406 486-611 (1120)
147 COG5537 IRR1 Cohesin [Cell div 46.0 1.1E+02 0.0024 40.0 10.3 130 268-408 285-428 (740)
148 KOG1241 Karyopherin (importin) 45.6 9.8E+02 0.021 32.8 30.9 153 254-407 360-532 (859)
149 PF04118 Dopey_N: Dopey, N-ter 43.9 1.7E+02 0.0036 35.9 11.2 107 247-364 131-251 (307)
150 PF08569 Mo25: Mo25-like; Int 43.1 7.5E+02 0.016 30.8 17.0 110 240-350 183-313 (335)
151 KOG1832 HIV-1 Vpr-binding prot 43.1 14 0.0003 49.2 2.1 22 839-860 753-774 (1516)
152 KOG2032 Uncharacterized conser 42.8 5E+02 0.011 33.7 15.0 251 266-528 188-455 (533)
153 KOG2062 26S proteasome regulat 42.8 98 0.0021 41.3 9.3 88 274-373 502-590 (929)
154 PF13251 DUF4042: Domain of un 42.0 1.5E+02 0.0032 33.6 9.7 98 267-367 49-174 (182)
155 KOG1077 Vesicle coat complex A 41.0 98 0.0021 41.1 8.8 120 242-366 307-432 (938)
156 KOG4413 26S proteasome regulat 40.9 1.7E+02 0.0036 35.8 10.1 129 271-406 53-201 (524)
157 KOG1832 HIV-1 Vpr-binding prot 39.1 18 0.00038 48.3 2.1 22 1178-1199 1123-1144(1516)
158 KOG4224 Armadillo repeat prote 38.7 3.7E+02 0.008 33.5 12.6 146 257-405 207-363 (550)
159 COG5064 SRP1 Karyopherin (impo 38.6 2.1E+02 0.0045 35.2 10.4 137 260-403 73-251 (526)
160 PF12074 DUF3554: Domain of un 37.7 1.5E+02 0.0032 36.3 9.7 87 315-405 3-90 (339)
161 PF04826 Arm_2: Armadillo-like 37.4 1.2E+02 0.0027 35.9 8.6 135 269-403 24-161 (254)
162 PF08506 Cse1: Cse1; InterPro 37.2 6.6E+02 0.014 31.6 15.2 112 620-732 227-358 (370)
163 PLN00104 MYST -like histone ac 37.2 1.8E+02 0.0039 37.3 10.2 38 1374-1411 54-97 (450)
164 PF12530 DUF3730: Protein of u 37.1 7.4E+02 0.016 28.9 16.0 71 244-321 107-178 (234)
165 COG5116 RPN2 26S proteasome re 36.5 61 0.0013 41.8 6.0 63 308-373 525-587 (926)
166 KOG2050 Puf family RNA-binding 36.2 6E+02 0.013 33.7 14.4 123 395-546 246-376 (652)
167 PF08569 Mo25: Mo25-like; Int 36.1 9E+02 0.019 30.1 15.9 168 225-406 49-239 (335)
168 KOG2956 CLIP-associating prote 36.0 6.8E+02 0.015 32.4 14.6 177 142-327 286-476 (516)
169 KOG0943 Predicted ubiquitin-pr 35.6 76 0.0016 43.8 6.8 16 955-970 1213-1228(3015)
170 COG5656 SXM1 Importin, protein 35.1 1.3E+03 0.029 31.6 17.3 277 23-332 494-805 (970)
171 KOG0567 HEAT repeat-containing 34.6 5.7E+02 0.012 30.8 13.0 147 241-408 53-252 (289)
172 KOG2160 Armadillo/beta-catenin 33.9 4.1E+02 0.0089 33.0 12.2 96 266-366 132-239 (342)
173 KOG2153 Protein involved in th 33.9 1.1E+02 0.0024 40.2 7.8 52 317-368 303-354 (704)
174 PF14664 RICTOR_N: Rapamycin-i 33.6 1.2E+02 0.0026 38.0 8.0 111 259-372 26-142 (371)
175 KOG3026 Splicing factor SPF30 33.1 42 0.00092 38.8 3.6 37 1373-1409 90-126 (262)
176 COG5215 KAP95 Karyopherin (imp 33.1 1.1E+03 0.024 31.3 15.8 234 29-328 473-726 (858)
177 cd03568 VHS_STAM VHS domain fa 32.9 1.2E+02 0.0026 33.0 7.0 71 599-673 36-113 (144)
178 KOG2160 Armadillo/beta-catenin 31.9 3.3E+02 0.0072 33.8 11.0 145 260-407 85-242 (342)
179 KOG3723 PH domain protein Melt 31.9 1.3E+03 0.029 30.4 18.2 49 241-290 182-230 (851)
180 KOG1517 Guanine nucleotide bin 31.6 2.7E+02 0.0058 38.9 10.8 137 252-408 597-735 (1387)
181 PF14911 MMS22L_C: S-phase gen 31.1 3.5E+02 0.0076 34.1 11.2 78 200-283 277-370 (373)
182 KOG1820 Microtubule-associated 30.6 1.2E+03 0.026 32.5 16.9 104 302-405 256-365 (815)
183 PF00514 Arm: Armadillo/beta-c 29.9 82 0.0018 26.3 4.0 29 338-366 12-40 (41)
184 PF11707 Npa1: Ribosome 60S bi 29.6 1.7E+02 0.0038 35.8 8.5 132 250-405 48-214 (330)
185 PF11919 DUF3437: Domain of un 29.5 1.2E+02 0.0025 30.6 5.7 57 351-408 2-61 (90)
186 PLN03076 ARF guanine nucleotid 29.3 2.4E+03 0.051 32.5 31.7 161 48-215 1083-1258(1780)
187 PF08324 PUL: PUL domain; Int 29.2 2.4E+02 0.0052 33.2 9.3 97 270-366 122-230 (268)
188 KOG0168 Putative ubiquitin fus 29.1 1.1E+03 0.024 32.7 15.5 183 589-774 243-440 (1051)
189 KOG1061 Vesicle coat complex A 28.6 1.7E+03 0.037 30.6 29.5 124 242-371 70-193 (734)
190 cd03561 VHS VHS domain family; 28.5 4.5E+02 0.0097 27.9 10.3 81 325-407 26-114 (133)
191 KOG1243 Protein kinase [Genera 28.1 5.6E+02 0.012 34.6 12.7 148 252-401 324-472 (690)
192 PF12830 Nipped-B_C: Sister ch 28.1 4.4E+02 0.0094 29.7 10.6 66 299-369 8-76 (187)
193 KOG0162 Myosin class I heavy c 27.2 6E+02 0.013 34.4 12.4 153 158-315 454-643 (1106)
194 KOG2213 Apoptosis inhibitor 5/ 26.9 1.4E+03 0.031 29.1 28.0 90 441-540 237-334 (460)
195 PF13764 E3_UbLigase_R4: E3 ub 26.5 1.2E+03 0.027 32.4 16.0 164 12-194 44-235 (802)
196 KOG0213 Splicing factor 3b, su 26.0 1.9E+03 0.041 30.3 21.6 214 182-405 797-1024(1172)
197 KOG1078 Vesicle coat complex C 25.9 1.9E+03 0.042 30.3 31.6 94 311-407 220-313 (865)
198 KOG1293 Proteins containing ar 25.8 3E+02 0.0065 36.6 9.7 172 263-445 336-524 (678)
199 KOG3687 Tuberin - Rap/ran-GTPa 24.9 2.2E+03 0.047 30.6 21.0 385 81-482 29-515 (1697)
200 PF08767 CRM1_C: CRM1 C termin 24.8 4E+02 0.0087 32.7 10.3 125 163-287 43-194 (319)
201 KOG3064 RNA-binding nuclear pr 24.1 27 0.00058 40.8 0.1 18 1606-1623 244-261 (303)
202 PF02237 BPL_C: Biotin protein 23.1 2E+02 0.0043 25.3 5.3 39 1376-1417 2-40 (48)
203 cd06561 AlkD_like A new struct 22.7 3.2E+02 0.0069 30.3 8.3 76 313-396 120-195 (197)
204 cd03568 VHS_STAM VHS domain fa 22.3 6.4E+02 0.014 27.5 10.1 74 334-407 33-112 (144)
205 PF14664 RICTOR_N: Rapamycin-i 22.1 1.3E+03 0.028 29.0 14.2 198 200-406 44-270 (371)
206 PF08605 Rad9_Rad53_bind: Fung 21.8 1.6E+02 0.0034 31.8 5.2 49 1387-1438 21-69 (131)
207 KOG1848 Uncharacterized conser 21.6 2.1E+03 0.045 32.0 16.4 125 266-390 1004-1163(1610)
208 KOG2122 Beta-catenin-binding p 20.7 3E+03 0.066 30.8 21.4 97 275-371 211-328 (2195)
209 smart00288 VHS Domain present 20.0 6.8E+02 0.015 26.7 9.7 81 325-407 26-113 (133)
No 1
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.2e-134 Score=1307.29 Aligned_cols=1063 Identities=30% Similarity=0.463 Sum_probs=896.4
Q ss_pred HHHccccCCCCCCHHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhchhhhhcCCCcchHHHHHHHHHHHhhhcCC
Q 000319 10 KEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAP 89 (1674)
Q Consensus 10 ~~~g~kL~~~~~s~~eLlkrLk~L~~~Ls~~dQ~~~~~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~AP 89 (1674)
..-|-+....|++++||++||++|++||++++|++ .+++++.|++.+|+++.||+|+|+|||+|||||+|||||||||
T Consensus 6 ~~~g~~~~~~~~s~~ell~rLk~l~~~l~~~~qd~--~~~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aP 83 (1266)
T KOG1525|consen 6 YPPGCLTSLNPISKDELLKRLKKLANCLASLDQDN--LDLASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAP 83 (1266)
T ss_pred cCCCCccccCcccHHHHHHHHHHHHHHHhhcccCc--hhHHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCC
Confidence 34455666678999999999999999999999996 6999999999999999999999999999999999999999999
Q ss_pred CCCCChh----HHHHHHHHhcCCCCCCCCChhhHHHHHHHHHhhhhhheeccCCchHHHHHHHHHHHHhhcCCChhhHHH
Q 000319 90 EAPYSDD----VLKLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLS 165 (1674)
Q Consensus 90 dAPytdd----~lkli~~~f~~L~d~~~p~f~q~~~lLesLA~vks~vlm~DL~~~~Li~~lF~~ff~iv~~~~~~~V~~ 165 (1674)
||||++. +|++|++||.||+|+.+|||.||+||||+||+||.|++|.|.+|++++.+||++||++++.+|+.+|++
T Consensus 84 eaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~ 163 (1266)
T KOG1525|consen 84 EAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFN 163 (1266)
T ss_pred CCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHHHHH
Confidence 9999995 555999999999999999999999999999999955555555699999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccHHHHHHHHHhhcCCCc---HHHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCC-CCCCCcchH
Q 000319 166 SMQTIMIVLLEESEDIQEDLLVILLSALGRNKN---DTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDS-RPGHSHIDY 241 (1674)
Q Consensus 166 ~m~~IL~~vI~Ese~vp~~lLd~IL~~l~~~~~---~~a~~lA~~v~~~~~dkL~~~I~q~f~~~l~~d~-~~~~~~~~~ 241 (1674)
|.+||+.+|.|.+.||.++|++||.+|..++. ..|++||..+|+.|++.+++.|++||++.+.++. ..+....++
T Consensus 164 -~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~ 242 (1266)
T KOG1525|consen 164 -MLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKY 242 (1266)
T ss_pred -HHHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHH
Confidence 99999999999999999999999999975543 3999999999999999999999999999888764 455667789
Q ss_pred HHHHHHHHhhcchhhhhhhhcccccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHH
Q 000319 242 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 321 (1674)
Q Consensus 242 h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve 321 (1674)
|++|++||+++|++|++|||||++||+++++.+|+.||.++|+||+.+++.++.+|+++|.+||+||+|++++||++||+
T Consensus 243 he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~ 322 (1266)
T KOG1525|consen 243 HELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVE 322 (1266)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHH
Q 000319 322 HVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLA 401 (1674)
Q Consensus 322 ~~~~iL~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VRkeAm~~La 401 (1674)
++++||.+||+...+..+..+++.|+.|+|++||..+|.++|+++.+.+..+|. +|+.|+||+||||+.||++||++|+
T Consensus 323 ~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~La 401 (1266)
T KOG1525|consen 323 SIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLA 401 (1266)
T ss_pred HhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 999999999998888899999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHH-HhhhccCCCccccccccchHHHhhhhccCCCCc-hhHHHHhhcCCcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 000319 402 DIFRG-CCLRNFNGSINQNEFEWIPGKILRCLYDKDFGS-DTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKAL 479 (1674)
Q Consensus 402 ~LY~~-~~~~~~~~~~~~~~~~wIPskIL~~~Y~nD~~~-~lVE~vL~e~LlP~~~~~~~R~~~ll~l~~~LD~~~~kal 479 (1674)
++|+. ||..++++...+..|.|||++||++||.|+.+. .+||++|+++|+|+++++++|+++|+++|++||..+.++|
T Consensus 402 qlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~~D~~a~kaf 481 (1266)
T KOG1525|consen 402 QLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHLYQLLAGLDLNAHKAF 481 (1266)
T ss_pred HHHHHHHHhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcccHhhhhHH
Confidence 99996 555666777888999999999999999998764 4999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHhh--chHHHHHHHHHHhcC
Q 000319 480 EKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQL--KDANVWKILMNLLDS 557 (1674)
Q Consensus 480 ~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kL~~~I~~Ls~~fPDp~Ka~~~L~kf~kl--nD~Ri~kLLk~~id~ 557 (1674)
..|+++|+++|.+|+.||.++...+.++ ..+++...|..++..||||.......++|++. .+..+..++..+..+
T Consensus 482 ~~i~~~q~~ls~~vr~~I~~~k~~~~d~---~~k~i~~~i~~i~~~lpD~~s~~~~~~~f~~~L~~~~~~~s~~~~L~~~ 558 (1266)
T KOG1525|consen 482 NEILKRQSRLSEEVRDYITLSKTPNTDD---SMKKIFSKIVKISENLPDPSSRSYDSMKFADVLETLAKVRSCLVSLDSP 558 (1266)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCccH---hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999988765443 77788888999999999999999999999763 467889999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcC----CCchHHHHHHHHHhhhccccCh-hHHHHHHHHHHhhcc-------cch--hhhHHH
Q 000319 558 NTSFDQAFTGRDDLLKILGA----KHRLYDFLSTLSMKCSYLLFNK-EHVKEILLEVAAQKS-------SAN--AQFMQS 623 (1674)
Q Consensus 558 ~td~~tv~~a~kELlkkL~~----~~~l~e~l~~Ll~RsS~lifNk-s~V~~LL~~v~~~~~-------~~~--~~~~~~ 623 (1674)
..+|.+..-.+++++.+++. +..+..+.+.|..|..++.+.. +.+..++........ .++ ......
T Consensus 559 ~~~C~~l~~~v~~~l~e~~~~~~s~nlF~~~~~~li~~I~~v~~di~~s~~~~ik~~~~~i~~~~~~l~e~v~~~~a~kl 638 (1266)
T KOG1525|consen 559 SISCKELLITVKEILFELGRKKQSKNLFSSMEKELIERIAEVSLDILESISALIKLNNIVIAEVSLLLLEGVLSEKALKL 638 (1266)
T ss_pred chhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHhcchhhhhHHHHHHHHhhhhhhHHHHHhhcccccchhhHHhH
Confidence 88888776556666666554 4457788899999999988887 777777765322111 111 122345
Q ss_pred HHHHHHHHHhhCCcCcccc--HHHHHHHHhhccccchHHHHHHHHHhhcchhhhhhcccchHHHHHHHHhhcCChHHHHH
Q 000319 624 CMDILGILARFSPLLLGGT--EEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKY 701 (1674)
Q Consensus 624 a~eLL~~IS~~~P~lFk~~--v~~Li~lL~~~~~~~~~~aLkiLak~~k~i~e~~~~~~s~l~~~L~~lal~Gtp~qAKy 701 (1674)
...||.++|..+|.+|... +..++..+....+...+.+|+.+.+.|..+....+...+.+...+.+++..|+|.|||+
T Consensus 639 ~~~lle~ls~~~~~~~~~s~~v~~i~~~~~~~~~~~~~~vLk~~~~~~~~~~~~~~si~~~~~~~~~~~~~~g~~~q~k~ 718 (1266)
T KOG1525|consen 639 KKYLLEALSSIHPDLFKYSESVLSILEKLFSEPDVVAPVVLKKLESQGKKIEVEAPSILSTLSRVLAKKELSGTPEQAKL 718 (1266)
T ss_pred HHHHHHHhhhcCcchhhhhHHHHHHHHHhccchhhhhHHHHHHHHhccccccccchhhhcchhhhhhHHHHcCCcchhHH
Confidence 6789999999999999876 46677666666666778899999888855454455566778999999999999999999
Q ss_pred HHHHHHhhcCCCccchHHHHHHHHHHhhhhc-----CCCchHHHHHHHHHhhcccccccc-hHHHHHHHHHhhhcccCcc
Q 000319 702 AVHALAAITKDDGLKSLSVLYKRLVDMLEEK-----THLPAVLQSLGCIAQTAMPVFETR-ESEIEEFIKSKILRCSNKI 775 (1674)
Q Consensus 702 Avr~Laa~~~~~~~~~~~~L~~~L~~~L~~~-----~~l~t~L~sL~~Iaq~ap~vfe~~-~~eI~~fIik~IL~~~~~~ 775 (1674)
|++|+.++...+.. .+..++..+.+.+... .++.+.+.+||+|+.+.|..|.+. ...+..||+|+++..++.+
T Consensus 719 ~~~~i~~~~~s~~~-~l~q~~~~~~d~l~~~~~~~~e~~~~~i~~lgei~~~~p~~~~~~~k~~~~~~IvK~~~~~~~~~ 797 (1266)
T KOG1525|consen 719 AKRCIKAILQSKFC-KLKQTFEEIKDNLLEDLTSELEGLRTPIVTLGEIFLDLPSQFLDPLKSDVAKFIVKKVLSNDDSP 797 (1266)
T ss_pred HhhhhhHHhhhhhh-HHHHHhhhhHHHHhhhhhhhhhccccchhhhhhHhhhccHhhcchhhhhhHHHHHHHHhcCCCcc
Confidence 99999988876522 3445677777776544 499999999999999999666554 7889999999998888888
Q ss_pred CCC-CCCCCCC---c-hhhHHHHHHHHHHHHHhhcCCCcccc--ccchHHHHHHHHHhh-ccCccccCCCCChhHHhHhH
Q 000319 776 RND-TKACWDD---R-SELCLLKIYGIKTLVKSYLPVKDAHI--RPGIDDLLGILKSML-SYGEMSEDIESSSVDKAHLR 847 (1674)
Q Consensus 776 ~~~-~~~~W~d---~-se~~~aKi~aLK~Lvn~ll~~~~~~~--~~~i~~ll~lL~~il-~~GEl~~~~~tp~~~ksrLR 847 (1674)
++. ....|+. . +..+.+|++|++++++||++...+.- +-.+...+.+|..++ +.|++..+..+|..++++||
T Consensus 798 ~e~~~~~~~~P~~~~~~p~~~~k~~a~~L~~~~l~~~~~d~~~~e~s~~~~~~~L~~ll~~~gdl~~~~~~~~~~~sklr 877 (1266)
T KOG1525|consen 798 GEKNKSKEWLPSDKLLSPNTSLKVLAIKLLVRRLLDLEEDKEKDELSTPRSFRLLSKLLNSEGDLTEQNRDPKSDQSKLR 877 (1266)
T ss_pred ccccCccccCCcccccchhhhhHHHHHHHhhhhccccccCcchhhhcchhHHHHHHHHHhhcCCCCcccCCcchhhhhhh
Confidence 775 6677876 2 45688899999999999999866421 111122566777765 69999999889999999999
Q ss_pred HHHHHHHHHhhhc--cCCCCCHHHHHHHhhcccCCchhHHHHHHHHHHHhHhcCCCchhhHHHHHhhhccCCCCchHHHH
Q 000319 848 LASAKAVLRLSRQ--WDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEEK 925 (1674)
Q Consensus 848 LaAa~~LLKLAr~--~d~~I~~d~f~l~~l~~qD~~~~VR~~Fl~KL~kyL~~~~Lp~kY~~lflla~~a~ep~~~~e~K 925 (1674)
+.|+.++||||.. +..++.++.|..+.+.++|++++||..|+.||++++....+|.-|++.|.+++.+..... ..-+
T Consensus 878 ~~a~~~ilKl~~~~~~~e~~~~~~~~~~~~~i~de~~~vR~~f~~kl~k~l~~i~lp~~~~a~~~l~~~d~~~~~-~~~~ 956 (1266)
T KOG1525|consen 878 LTAKITILKLASEKSYHEFINAEQYEKLILLISDECLQVRLVFLLKLHKGLSRIKLPLEYMAKFKLCAPDVSKEL-LANK 956 (1266)
T ss_pred hhhhheeeecccccchhccCCHHHHHHHHHHhcCCchhHHHHHHHHccccccccccchhhhhHHHHhccchhhhh-hhHH
Confidence 9999999999976 578899999998888899999999999999999999999999999999998653311100 0001
Q ss_pred HHHHHHHHHHHHHHHhhhhhccccccccCcchhhhHHHHhhccCCCCCCccchhcHHHHHHHHHHHHHHHHHhhccCccc
Q 000319 926 QNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDV 1005 (1674)
Q Consensus 926 ~~l~~~i~~~~~~r~r~~s~~s~~~~~~~~pEy~LprLIHlLAHH~~Pd~ee~~d~~a~~~~~~~L~F~L~~L~~~~~~~ 1005 (1674)
....+-...+++.+.....+.++. .....|||+.+|.+|++||| |+|....++..|-.+..++||.++.|...+
T Consensus 957 ~~~~t~~~~~~r~~t~~e~~~s~~-~~~~~~e~V~~~~~~~la~d--~~~~~~edv~~l~~~ke~~~~vl~~l~~~~--- 1030 (1266)
T KOG1525|consen 957 REEETKNSASRREQTKFERATSDG-TLAHLPEYVGSYVIHLLAHD--PDFVKAEDVDSLSDLKECLWFVLEDLDEEN--- 1030 (1266)
T ss_pred HHhhhhcchhhhhhhhhhhccCch-hhhhhhHHhhhhhhhhhccC--ccccccchhhhHHHHHHhHHHHHhhhhhhh---
Confidence 111111222222233333333321 15688999999999999999 999998899999999999999999996422
Q ss_pred cccccccccH--HHHHHHHHHhhcccccccc---ccCcchHHHHHHHHHHHHHHhc-cCCCCcccccccCCCccccCCCC
Q 000319 1006 KSEASNKESI--SVIISIFRSIKCSEDIVDA---AKSKNSHAICDLGLSITKRLSR-MEDNSQGVFSSVSLPSTLYKPYE 1079 (1674)
Q Consensus 1006 ~~~~a~~eNi--SlLy~La~rIKq~rDa~d~---~~S~nlY~LcDLAq~IIk~~a~-k~W~lqsyPGkV~LPs~LF~p~~ 1079 (1674)
+|+ .+.-.+.+-+++.+|...+ ..+..||+|||+|+.|+..... .+|..++|||+++||..+|.+..
T Consensus 1031 -------~n~~~~~~~~~~~~~~~~~d~~s~~d~~~~~kl~~l~d~a~~i~~sk~~~~s~~~tt~~~~~~lp~~~~~~~~ 1103 (1266)
T KOG1525|consen 1031 -------ENNQHKFWKREKEEIKGSEDEESPDDVGDNIKLYTLCDLAQCIILSKSTKFSNSSTTSPGKLNLPALSFTSPK 1103 (1266)
T ss_pred -------ccchhHHHHHHHhhhhcchhhcCCcccCCCceeeeHHhHHHHHHhcccccccCCCCCCCccccCchhhhCCcc
Confidence 232 2333444556667787643 3356799999999999997775 67999999999999999999986
Q ss_pred CCCcccccccccccccccch
Q 000319 1080 KKEGDDSLASERQTWLADES 1099 (1674)
Q Consensus 1080 s~~~~~a~~~~~k~yLpde~ 1099 (1674)
+ .+ -...++|+|+++
T Consensus 1104 ~----kn-~~~~k~~i~e~~ 1118 (1266)
T KOG1525|consen 1104 D----KN-FINNKIYIPEET 1118 (1266)
T ss_pred h----hh-hccccccCCchh
Confidence 4 22 246899999994
No 2
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=6.5e-14 Score=185.57 Aligned_cols=490 Identities=17% Similarity=0.123 Sum_probs=249.3
Q ss_pred CcCccccHHHHHHHHhhccccchHHHHHHHHHhhcchhhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCcc
Q 000319 636 PLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGL 715 (1674)
Q Consensus 636 P~lFk~~v~~Li~lL~~~~~~~~~~aLkiLak~~k~i~e~~~~~~s~l~~~L~~lal~Gtp~qAKyAvr~Laa~~~~~~~ 715 (1674)
+.+|..-+..|++.|.. ..+.++..++..++.............++..|.++..+..||.+.+|..+..+...
T Consensus 583 ~nlF~~~~~~li~~I~~-------v~~di~~s~~~~ik~~~~~i~~~~~~l~e~v~~~~a~kl~~~lle~ls~~~~~~~~ 655 (1266)
T KOG1525|consen 583 KNLFSSMEKELIERIAE-------VSLDILESISALIKLNNIVIAEVSLLLLEGVLSEKALKLKKYLLEALSSIHPDLFK 655 (1266)
T ss_pred cchHHHHHHHHHHHhcc-------hhhhhHHHHHHHHhhhhhhHHHHHhhcccccchhhHHhHHHHHHHHhhhcCcchhh
Confidence 44888888888888776 34555555554444333333334455566788888889999999999977765432
Q ss_pred chHHHHHHHHHHhhh--hcCCCchHHHHHHHHHhhcccccccchHHHHHHHHHhhhcccCccCCCCCCCCCCchhhHHHH
Q 000319 716 KSLSVLYKRLVDMLE--EKTHLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLK 793 (1674)
Q Consensus 716 ~~~~~L~~~L~~~L~--~~~~l~t~L~sL~~Iaq~ap~vfe~~~~eI~~fIik~IL~~~~~~~~~~~~~W~d~se~~~aK 793 (1674)
.+..+..|+..+. .....|.+|+.+.+++ +.+-......+..++-.-.....+...+..+..|..-...++.+
T Consensus 656 --~s~~v~~i~~~~~~~~~~~~~~vLk~~~~~~---~~~~~~~~si~~~~~~~~~~~~~~g~~~q~k~~~~~i~~~~~s~ 730 (1266)
T KOG1525|consen 656 --YSESVLSILEKLFSEPDVVAPVVLKKLESQG---KKIEVEAPSILSTLSRVLAKKELSGTPEQAKLAKRCIKAILQSK 730 (1266)
T ss_pred --hhHHHHHHHHHhccchhhhhHHHHHHHHhcc---ccccccchhhhcchhhhhhHHHHcCCcchhHHHhhhhhHHhhhh
Confidence 1233444444432 2237788899888888 33333333233333221111111111112333343333334433
Q ss_pred HHHHHHHHHhhcCCCccccccchHHHHHHHHHhhccCccccCCCCChhHHhHhHHHHHHHHHHhhhccCCCCCHHHHHHH
Q 000319 794 IYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLT 873 (1674)
Q Consensus 794 i~aLK~Lvn~ll~~~~~~~~~~i~~ll~lL~~il~~GEl~~~~~tp~~~ksrLRLaAa~~LLKLAr~~d~~I~~d~f~l~ 873 (1674)
.. .+.+......+..........-.+...++.-|++... .|++.+..++..++..|+|.. .+....+.+.+.-.
T Consensus 731 ~~---~l~q~~~~~~d~l~~~~~~~~e~~~~~i~~lgei~~~--~p~~~~~~~k~~~~~~IvK~~-~~~~~~~~e~~~~~ 804 (1266)
T KOG1525|consen 731 FC---KLKQTFEEIKDNLLEDLTSELEGLRTPIVTLGEIFLD--LPSQFLDPLKSDVAKFIVKKV-LSNDDSPGEKNKSK 804 (1266)
T ss_pred hh---HHHHHhhhhHHHHhhhhhhhhhccccchhhhhhHhhh--ccHhhcchhhhhhHHHHHHHH-hcCCCccccccCcc
Confidence 33 2223333322221111111222333334455677653 458999999999999999998 56655555555222
Q ss_pred hhcccCCchhHHHHHHHHHHHhHhcCCCchhhHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHhhhhhcccccccc
Q 000319 874 LRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADIIQMHHQMKARQISVQSDANSFA 953 (1674)
Q Consensus 874 ~l~~qD~~~~VR~~Fl~KL~kyL~~~~Lp~kY~~lflla~~a~ep~~~~e~K~~l~~~i~~~~~~r~r~~s~~s~~~~~~ 953 (1674)
.++..+.. ++.-+++-++.. .-+..|. + .... -.
T Consensus 805 ~~~P~~~~-------------------~~p~~~~k~~a~-------------~L~~~~l--------~--~~~~----d~ 838 (1266)
T KOG1525|consen 805 EWLPSDKL-------------------LSPNTSLKVLAI-------------KLLVRRL--------L--DLEE----DK 838 (1266)
T ss_pred ccCCcccc-------------------cchhhhhHHHHH-------------HHhhhhc--------c--cccc----Cc
Confidence 22221111 111111111100 0000000 0 0000 01
Q ss_pred CcchhhhHH---HHhhccCCCCCCccchhcHHHHHHHHHHHHHHHHHhhccCccccccccccccHHHHHHHHHHhhcccc
Q 000319 954 TYPEYIIPY---LVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIISIFRSIKCSED 1030 (1674)
Q Consensus 954 ~~pEy~Lpr---LIHlLAHH~~Pd~ee~~d~~a~~~~~~~L~F~L~~L~~~~~~~~~~~a~~eNiSlLy~La~rIKq~rD 1030 (1674)
...|+..+| +|..|.|-..+.-....+-.... .++. ..+ ..-+..+ ..++.+..
T Consensus 839 ~~~e~s~~~~~~~L~~ll~~~gdl~~~~~~~~~~~---sklr----~~a---------------~~~ilKl-~~~~~~~e 895 (1266)
T KOG1525|consen 839 EKDELSTPRSFRLLSKLLNSEGDLTEQNRDPKSDQ---SKLR----LTA---------------KITILKL-ASEKSYHE 895 (1266)
T ss_pred chhhhcchhHHHHHHHHHhhcCCCCcccCCcchhh---hhhh----hhh---------------hheeeec-ccccchhc
Confidence 222333333 55555555211111111101110 0000 000 0001111 12333333
Q ss_pred ccccccCcchHHHHHHHHHHHH-------HHhccCCCCcccccccCCCccccCCCCCCCcccccccccccccccchhhhh
Q 000319 1031 IVDAAKSKNSHAICDLGLSITK-------RLSRMEDNSQGVFSSVSLPSTLYKPYEKKEGDDSLASERQTWLADESVLTH 1103 (1674)
Q Consensus 1031 a~d~~~S~nlY~LcDLAq~IIk-------~~a~k~W~lqsyPGkV~LPs~LF~p~~s~~~~~a~~~~~k~yLpde~~l~~ 1103 (1674)
. .+-...+.+++.+.- .++.+ ++.+--++.||..+..+ .+-|.|+.....+
T Consensus 896 ~------~~~~~~~~~~~~i~de~~~vR~~f~~k---l~k~l~~i~lp~~~~a~-------------~~l~~~d~~~~~~ 953 (1266)
T KOG1525|consen 896 F------INAEQYEKLILLISDECLQVRLVFLLK---LHKGLSRIKLPLEYMAK-------------FKLCAPDVSKELL 953 (1266)
T ss_pred c------CCHHHHHHHHHHhcCCchhHHHHHHHH---ccccccccccchhhhhH-------------HHHhccchhhhhh
Confidence 3 344455555555443 22221 22222336666643322 3445555545555
Q ss_pred hhhhcccccccccc--hhhhcccccccccCCCccchhHHHHHhhcccccCCccccccCchhhhccCCCchhhhhhhhhcc
Q 000319 1104 FESLKLETHEVVGS--EIARHEALDDLEKDGNEVPLGKMIQQLKSQGAKGGKAKKKKSSPAEVKGTENDVDILQMVREIN 1181 (1674)
Q Consensus 1104 ~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1181 (1674)
.......+.+.++. ++....+. .+|- +.++-++.-++.+-..++.++.+++| ||+.|.++++++
T Consensus 954 ~~~~~~~t~~~~~~r~~t~~e~~~----s~~~----~~~~~e~V~~~~~~~la~d~~~~~~e------dv~~l~~~ke~~ 1019 (1266)
T KOG1525|consen 954 ANKREEETKNSASRREQTKFERAT----SDGT----LAHLPEYVGSYVIHLLAHDPDFVKAE------DVDSLSDLKECL 1019 (1266)
T ss_pred hHHHHhhhhcchhhhhhhhhhhcc----Cchh----hhhhhHHhhhhhhhhhccCccccccc------hhhhHHHHHHhH
Confidence 55556666665544 22222222 3343 77888888888888889999998888 999999999999
Q ss_pred cccccCccccccCCCCCCCCcccccchhhHHHHhhccCCcccc-cccCccccccccCCCCCCCCCCCC
Q 000319 1182 LDNLGVLNKFESSNGHKHFPSKQIKVDLENEEIKKRKATDVTS-FPVPKRRRSLSAHGGFRTPKSNSK 1248 (1674)
Q Consensus 1182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 1248 (1674)
+.-+..++.++.+|+|.+....+.+-..-....-.+.+++.++ +.|+.+.+.+..+.+..++.+..+
T Consensus 1020 ~~vl~~l~~~~~n~~~~~~~~~~~~~~~~~d~~s~~d~~~~~kl~~l~d~a~~i~~sk~~~~s~~~tt 1087 (1266)
T KOG1525|consen 1020 WFVLEDLDEENENNQHKFWKREKEEIKGSEDEESPDDVGDNIKLYTLCDLAQCIILSKSTKFSNSSTT 1087 (1266)
T ss_pred HHHHhhhhhhhccchhHHHHHHHhhhhcchhhcCCcccCCCceeeeHHhHHHHHHhcccccccCCCCC
Confidence 9999999999999999877555443222222222244444444 678888888888877777766655
No 3
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=98.97 E-value=1.1e-09 Score=95.79 Aligned_cols=44 Identities=34% Similarity=0.647 Sum_probs=36.3
Q ss_pred cccceEEEecCCCCceEEEEEEeecCCCCeeEEEccCCcceeee
Q 000319 1375 LIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLR 1418 (1674)
Q Consensus 1375 lvG~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdDgd~E~l~ 1418 (1674)
-.|.+|++|||++..||+|.|++||+.++.|+|.|+||++..|.
T Consensus 7 ~~Ge~V~~rWP~s~lYYe~kV~~~d~~~~~y~V~Y~DGtel~lk 50 (55)
T PF09465_consen 7 AIGEVVMVRWPGSSLYYEGKVLSYDSKSDRYTVLYEDGTELELK 50 (55)
T ss_dssp -SS-EEEEE-TTTS-EEEEEEEEEETTTTEEEEEETTS-EEEEE
T ss_pred cCCCEEEEECCCCCcEEEEEEEEecccCceEEEEEcCCCEEEec
Confidence 47999999999999999999999999999999999999994443
No 4
>PTZ00429 beta-adaptin; Provisional
Probab=98.66 E-value=5.3e-05 Score=99.42 Aligned_cols=392 Identities=12% Similarity=0.059 Sum_probs=209.9
Q ss_pred ccccCCChHHHHHHHH-HHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHH
Q 000319 265 GELLTDQLDTRLKAVG-LVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTAL 343 (1674)
Q Consensus 265 ~EL~sed~~~Rl~At~-llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~~~eIi~~L 343 (1674)
.+|.+.+...|+.|.+ +++-|.-+ -+...-|+++-+.+ .=.+..+|..+--++..+...+|+ .+--.++.|
T Consensus 39 ~~L~s~~~~~kk~alKkvIa~mt~G--~DvS~LF~dVvk~~----~S~d~elKKLvYLYL~~ya~~~pe--lalLaINtl 110 (746)
T PTZ00429 39 NDLNGTDSYRKKAAVKRIIANMTMG--RDVSYLFVDVVKLA----PSTDLELKKLVYLYVLSTARLQPE--KALLAVNTF 110 (746)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHCC--CCchHHHHHHHHHh----CCCCHHHHHHHHHHHHHHcccChH--HHHHHHHHH
Confidence 3444556676676665 66666554 35566566665544 334778888777776665555553 233568999
Q ss_pred HhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCcccccccc
Q 000319 344 CDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEW 423 (1674)
Q Consensus 344 ~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VRkeAm~~La~LY~~~~~~~~~~~~~~~~~~w 423 (1674)
.+=|.|+++-||.-|+.++|.+-... +-+.++..+..-+.|+.+-||+.|.-+++++|+..- .....-+|
T Consensus 111 ~KDl~d~Np~IRaLALRtLs~Ir~~~---i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p-------elv~~~~~ 180 (746)
T PTZ00429 111 LQDTTNSSPVVRALAVRTMMCIRVSS---VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM-------QLFYQQDF 180 (746)
T ss_pred HHHcCCCCHHHHHHHHHHHHcCCcHH---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc-------ccccccch
Confidence 99999999999999988887654433 223355667777899999999999999999999642 11122356
Q ss_pred chHHHhhhhccCCCCchhHHHHhhcCCcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000319 424 IPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMH 503 (1674)
Q Consensus 424 IPskIL~~~Y~nD~~~~lVE~vL~e~LlP~~~~~~~R~~~ll~l~~~LD~~~~kal~~il~~k~~l~~~~~~~l~l~~~~ 503 (1674)
+|. +..+..+.|.. .+-.. +..|..+.. -++. .+. + ....+++++......
T Consensus 181 ~~~-L~~LL~D~dp~--Vv~nA---------------l~aL~eI~~-~~~~---~l~-l------~~~~~~~Ll~~L~e~ 231 (746)
T PTZ00429 181 KKD-LVELLNDNNPV--VASNA---------------AAIVCEVND-YGSE---KIE-S------SNEWVNRLVYHLPEC 231 (746)
T ss_pred HHH-HHHHhcCCCcc--HHHHH---------------HHHHHHHHH-hCch---hhH-H------HHHHHHHHHHHhhcC
Confidence 653 44443333322 11111 001111110 0110 010 0 111122222221111
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCc--h
Q 000319 504 QDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHR--L 581 (1674)
Q Consensus 504 ~~~d~~ei~~kL~~~I~~Ls~~fPDp~Ka~~~L~kf~klnD~Ri~kLLk~~id~~td~~tv~~a~kELlkkL~~~~~--l 581 (1674)
+ +=.|-. +++.|+..-|+. -.+....+..++.+|...++ +
T Consensus 232 ---~-EW~Qi~---IL~lL~~y~P~~-------------------------------~~e~~~il~~l~~~Lq~~N~AVV 273 (746)
T PTZ00429 232 ---N-EWGQLY---ILELLAAQRPSD-------------------------------KESAETLLTRVLPRMSHQNPAVV 273 (746)
T ss_pred ---C-hHHHHH---HHHHHHhcCCCC-------------------------------cHHHHHHHHHHHHHhcCCCHHHH
Confidence 0 111111 233333322321 11122233444444444332 5
Q ss_pred HHHHHHHHHhhhccccChhHHHHHHHHHHhh---cccchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccccch
Q 000319 582 YDFLSTLSMKCSYLLFNKEHVKEILLEVAAQ---KSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIK 658 (1674)
Q Consensus 582 ~e~l~~Ll~RsS~lifNks~V~~LL~~v~~~---~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v~~Li~lL~~~~~~~~ 658 (1674)
++.++.+++-..+. +.+.+..++.++... -........-.+..-|..|...+|.+|..|.+.+.-...|.. .+.
T Consensus 274 l~Aik~il~l~~~~--~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~-yIK 350 (746)
T PTZ00429 274 MGAIKVVANLASRC--SQELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPP-FVK 350 (746)
T ss_pred HHHHHHHHHhcCcC--CHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcH-HHH
Confidence 56666655443322 444444444332110 001111123456677888999999999987655544444433 367
Q ss_pred HHHHHHHHHhhcchhhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhhcC-CCch
Q 000319 659 EGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT-HLPA 737 (1674)
Q Consensus 659 ~~aLkiLak~~k~i~e~~~~~~s~l~~~L~~lal~Gtp~qAKyAvr~Laa~~~~~~~~~~~~L~~~L~~~L~~~~-~l~t 737 (1674)
...|.+|+..+.. ++ -..+..-|..|+.+-++.-++.||++|+.+.-.- ......++..|++-+..+. ....
T Consensus 351 ~~KLeIL~~Lane--~N----v~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~-~~~a~~cV~~Ll~ll~~~~~~v~e 423 (746)
T PTZ00429 351 LEKLRLLLKLVTP--SV----APEILKELAEYASGVDMVFVVEVVRAIASLAIKV-DSVAPDCANLLLQIVDRRPELLPQ 423 (746)
T ss_pred HHHHHHHHHHcCc--cc----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHhcCCchhHHH
Confidence 7889999887632 11 1235566778888888999999999988766432 1223345555555554322 2223
Q ss_pred HHHHHHHHHhhccc
Q 000319 738 VLQSLGCIAQTAMP 751 (1674)
Q Consensus 738 ~L~sL~~Iaq~ap~ 751 (1674)
.+.++-.|.+..|.
T Consensus 424 ~i~vik~IlrkyP~ 437 (746)
T PTZ00429 424 VVTAAKDIVRKYPE 437 (746)
T ss_pred HHHHHHHHHHHCcc
Confidence 45556666666664
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=0.00049 Score=90.87 Aligned_cols=532 Identities=15% Similarity=0.155 Sum_probs=285.2
Q ss_pred hHHHHHHHHHhhcchhhhhhhhccccccc-CCChHHHHHHHHHHHHhhcCCCCCchh-hcHHHHHHHHhh-hcCCChhHH
Q 000319 240 DYHEVIYDVYRCSPQILSGVVPYLTGELL-TDQLDTRLKAVGLVGDLFAVPGSANNE-QFHSVFSEFLKR-LTDRIVAVR 316 (1674)
Q Consensus 240 ~~h~Li~eL~~~~P~lL~~ViP~Le~EL~-sed~~~Rl~At~llG~mfs~~~~~~a~-~y~~~w~~fL~R-~~D~s~~VR 316 (1674)
.+-+.+..+|+--| ++|.|.+-+. +.++++|..|.-++-++++..-..+.. .-.++=...|.- ..-..+.||
T Consensus 23 ~Ae~~l~~~~~~~~-----~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E~~~~vr 97 (1075)
T KOG2171|consen 23 QAEEALETLAKTEP-----LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQSETEPSVR 97 (1075)
T ss_pred HHHHHHHHhhcccc-----hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhccchHHH
Confidence 46777778898888 7777787777 779999999999999998764333322 222222222222 245788999
Q ss_pred HHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCC---HHHHHHHHHhhccCChhHH
Q 000319 317 MSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIP---VETVKLVAERLRDKSVLVK 393 (1674)
Q Consensus 317 ~~~ve~~~~iL~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~---~elL~~LaeR~RDKK~~VR 393 (1674)
.+..+.+..|-.+-... .-++++..|..+..++|+..|-.|+-.+..+...-..... .+++..+.+-|-|-...||
T Consensus 98 ~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr 176 (1075)
T KOG2171|consen 98 HKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVR 176 (1075)
T ss_pred HHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHH
Confidence 99999988877654322 4679999999999999999999999999887654333333 2677788899999999999
Q ss_pred HHHHHHHHHHHHHHhhhccCCCcccccc-ccchHHHhhhhccCCCCchhHHHHhhcCCcCCCCCHHHHHHHHHHHHhcCC
Q 000319 394 RYTMERLADIFRGCCLRNFNGSINQNEF-EWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFD 472 (1674)
Q Consensus 394 keAm~~La~LY~~~~~~~~~~~~~~~~~-~wIPskIL~~~Y~nD~~~~lVE~vL~e~LlP~~~~~~~R~~~ll~l~~~LD 472 (1674)
-.|.++++.+.... +++......| .-+|+-|.-+-- .++.. .......+|
T Consensus 177 ~~a~rA~~a~~~~~----~~~~~~~~~~~~llP~~l~vl~~----------------~i~~~-----d~~~a~~~l---- 227 (1075)
T KOG2171|consen 177 VAAVRALGAFAEYL----ENNKSEVDKFRDLLPSLLNVLQE----------------VIQDG-----DDDAAKSAL---- 227 (1075)
T ss_pred HHHHHHHHHHHHHh----ccchHHHHHHHHHhHHHHHHhHh----------------hhhcc-----chHHHHHHH----
Confidence 99999999876532 1223333334 455655543310 00000 000011111
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHhh--hcCCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhchHHHHH
Q 000319 473 RIEMKALEKILEQKQR-LQQEMQRYLSLRQM--HQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWK 549 (1674)
Q Consensus 473 ~~~~kal~~il~~k~~-l~~~~~~~l~l~~~--~~~~d~~ei~~kL~~~I~~Ls~~fPDp~Ka~~~L~kf~klnD~Ri~k 549 (1674)
++|..++..-.+ ++..+...++++-+ .+..-++.+....-.+|-+++..-|-..| +...+-++=+-.
T Consensus 228 ----~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k------~~~~~~~~lv~~ 297 (1075)
T KOG2171|consen 228 ----EALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCK------KLALLGHTLVPV 297 (1075)
T ss_pred ----HHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhh------hchhhhccHHHH
Confidence 111111111111 22233333344321 12222233333333445555555332222 222222222223
Q ss_pred HHHHHhcCC-----------------CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhccccChhHHHHHHHHHHhh
Q 000319 550 ILMNLLDSN-----------------TSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQ 612 (1674)
Q Consensus 550 LLk~~id~~-----------------td~~tv~~a~kELlkkL~~~~~l~e~l~~Ll~RsS~lifNks~V~~LL~~v~~~ 612 (1674)
++.-.++.+ +.+.-+..+.+.+-..|+++.. ++-++..+...
T Consensus 298 ~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v---------------------~p~~~~~l~~~ 356 (1075)
T KOG2171|consen 298 LLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQV---------------------LPPLFEALEAM 356 (1075)
T ss_pred HHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhe---------------------hHHHHHHHHHH
Confidence 333332222 2333344444444444554432 22233222211
Q ss_pred cccchhhhHHHHHHHHHHHHhhCCcCccccHHHHHH----HHhhccccchHHHHHHHHHhhcchhhhhhccc-chHHHH-
Q 000319 613 KSSANAQFMQSCMDILGILARFSPLLLGGTEEELVN----LLKEENEIIKEGILHVLAKAGGTIREQLAATS-SSVDLL- 686 (1674)
Q Consensus 613 ~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v~~Li~----lL~~~~~~~~~~aLkiLak~~k~i~e~~~~~~-s~l~~~- 686 (1674)
..+.+-.....|+--|-.|+.=|+.+..++..+++. .|.|..|.+...++.++.+.+..+...+.... +.+.+.
T Consensus 357 l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL 436 (1075)
T KOG2171|consen 357 LQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPAL 436 (1075)
T ss_pred hcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHH
Confidence 112222223334444555666666666666655544 45556667888899988776644322111111 111211
Q ss_pred HHHHhhcCChHHHHHHHHHHHhhcCCCccc----hHHHHHHHHHHhhhhc-C--CCchHHHHHHHHHhhcccccccchHH
Q 000319 687 LERLCLEGSRRQAKYAVHALAAITKDDGLK----SLSVLYKRLVDMLEEK-T--HLPAVLQSLGCIAQTAMPVFETRESE 759 (1674)
Q Consensus 687 L~~lal~Gtp~qAKyAvr~Laa~~~~~~~~----~~~~L~~~L~~~L~~~-~--~l~t~L~sL~~Iaq~ap~vfe~~~~e 759 (1674)
+..+-..++++.-.||+.+|....-.-... ++..|++.....|..+ + -....+++||.+|.-+-.-|..+-+.
T Consensus 437 ~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~ 516 (1075)
T KOG2171|consen 437 IALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDR 516 (1075)
T ss_pred HHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHH
Confidence 222333477888889988887544322112 3333444333334322 2 44557889999999998899999889
Q ss_pred HHHHHHHhhhcccCccCCCCCCCCCCchhhHHHHHHHHHHHHHhhcCCCccccccchHHHHHHHHHhhccCccccCCC-C
Q 000319 760 IEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIE-S 838 (1674)
Q Consensus 760 I~~fIik~IL~~~~~~~~~~~~~W~d~se~~~aKi~aLK~Lvn~ll~~~~~~~~~~i~~ll~lL~~il~~GEl~~~~~-t 838 (1674)
++.++. ++|..+.. ++-.+...|. +.|+.-.-++...+.+.+.+..++.+|-.+- +|+.....+ +
T Consensus 517 ~Mp~L~-~~L~n~~~----------~d~r~Lrgkt--mEcisli~~AVGke~F~~~a~eliqll~~~~-~~~~~~dd~~~ 582 (1075)
T KOG2171|consen 517 LMPLLK-NFLQNADD----------KDLRELRGKT--MECLSLIARAVGKEKFLPLAEELIQLLLELQ-GSDQDDDDPLR 582 (1075)
T ss_pred HHHHHH-HHHhCCCc----------hhhHHHHhhH--HHHHHHHHHHhhhhhhhHhHHHHHHHHHhhc-ccchhhccccH
Confidence 999875 55554321 1112233333 5555544444444456677777887765432 334433222 2
Q ss_pred ChhHHhHhHHHHH
Q 000319 839 SSVDKAHLRLASA 851 (1674)
Q Consensus 839 p~~~ksrLRLaAa 851 (1674)
+....+|-|++-+
T Consensus 583 sy~~~~warmc~i 595 (1075)
T KOG2171|consen 583 SYMIAFWARMCRI 595 (1075)
T ss_pred HHHHHHHHHHHHH
Confidence 3344555554443
No 6
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.44 E-value=0.011 Score=76.87 Aligned_cols=363 Identities=16% Similarity=0.171 Sum_probs=216.0
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhchhhhhcCCCcchHHHHHHHHHHHhhhcCCCCCCChhHHHH
Q 000319 21 STKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKL 100 (1674)
Q Consensus 21 ~s~~eLlkrLk~L~~~Ls~~dQ~~~~~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~APdAPytdd~lkl 100 (1674)
..+.+|..+|++-.-.| | .++...+.+.|+ ++|.-++.+||-++.-||+=|- .--..++++-
T Consensus 24 MAtsDLm~eLqkdsi~L---d-------~dSe~kvv~~lL--klL~D~ngEVQnlAVKClg~lv------sKvke~~le~ 85 (1233)
T KOG1824|consen 24 MATSDLMTELQKDSIKL---D-------DDSERKVVKMLL--KLLEDKNGEVQNLAVKCLGPLV------SKVKEDQLET 85 (1233)
T ss_pred hhHHHHHHHHHhhhhhc---c-------ccchhHHHHHHH--HHHhccCcHHHHHHHHHHHHHH------hhchHHHHHH
Confidence 45567777777763333 2 233444555554 4788899999999999997554 1122467787
Q ss_pred HHHHh-cC-CCCCCCCChhhHHHHHHHHHhhhhhheeccCCchHHHHHHHHHHHHhh----cC-CChhhHHHHHHHHHHH
Q 000319 101 IVGTF-SG-LKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVA----SD-DHPESVLSSMQTIMIV 173 (1674)
Q Consensus 101 i~~~f-~~-L~d~~~p~f~q~~~lLesLA~vks~vlm~DL~~~~Li~~lF~~ff~iv----~~-~~~~~V~~~m~~IL~~ 173 (1674)
++..+ .+ +++.+.--|.-...|...++++.-++ ...+-..+|+.|.... .. .....+.-..++||..
T Consensus 86 ~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~------~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d 159 (1233)
T KOG1824|consen 86 IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSS------SSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILAD 159 (1233)
T ss_pred HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCcc------ccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHH
Confidence 88776 44 56666655666666766666654211 1233344444444332 22 2223466677889988
Q ss_pred HhcccccccH----HHHHHHHHhhcCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCC--CCCCCCcch-HHHHHH
Q 000319 174 LLEESEDIQE----DLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGD--SRPGHSHID-YHEVIY 246 (1674)
Q Consensus 174 vI~Ese~vp~----~lLd~IL~~l~~~~~~~a~~lA~~v~~~~~dkL~~~I~q~f~~~l~~d--~~~~~~~~~-~h~Li~ 246 (1674)
++.-..++-+ .++.+++-++..++. +-++=|.-.+..-+....+.+-.++.+.+..+ +....+..+ +-..|-
T Consensus 160 ~lsr~g~ll~~fh~~il~~l~~ql~s~R~-aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~ 238 (1233)
T KOG1824|consen 160 VLSRFGTLLPNFHLSILKCLLPQLQSPRL-AVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLA 238 (1233)
T ss_pred HHHhhcccCcchHHHHHHHHhhcccChHH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence 8888765333 344444444433221 33333443343333444444444444433221 112222222 334555
Q ss_pred HHHhhcc----hhhhhhhhcccccc---cCCChHHHHHHHHHHHHhhcCCCC---------------------Cchh-hc
Q 000319 247 DVYRCSP----QILSGVVPYLTGEL---LTDQLDTRLKAVGLVGDLFAVPGS---------------------ANNE-QF 297 (1674)
Q Consensus 247 eL~~~~P----~lL~~ViP~Le~EL---~sed~~~Rl~At~llG~mfs~~~~---------------------~~a~-~y 297 (1674)
+|.+.+= .-+..++|.+.+.. ..++.++|....+.++-.+--..- |+.- +.
T Consensus 239 ~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~ 318 (1233)
T KOG1824|consen 239 AICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTE 318 (1233)
T ss_pred HHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCc
Confidence 5554432 33455777777777 788999999999988865543211 1100 00
Q ss_pred HHHHHHHHhh------------hcCCChhHHHHHHHHhHHHHhcCCCC--CChHHHHHHHHhhhCCChhHHHHHHHHHHH
Q 000319 298 HSVFSEFLKR------------LTDRIVAVRMSVLEHVKSCLLTDPSR--ADAPQILTALCDRLLDFDENVRKQVVAVIC 363 (1674)
Q Consensus 298 ~~~w~~fL~R------------~~D~s~~VR~~~ve~~~~iL~s~p~~--~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~ 363 (1674)
-+.=..|+.- =.|.+=.||.+..+++..++.++++. ..-+.+-..|..|+.|-+|.|+..+..++.
T Consensus 319 eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi 398 (1233)
T KOG1824|consen 319 EDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYI 398 (1233)
T ss_pred cchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHH
Confidence 1222222222 23556679999999999999987642 112345578889999999999999999998
Q ss_pred HhhhhhcCCC---------------------CH---HHHHHHHHhhccCChhHHHHHHHHHHHHHHHHh
Q 000319 364 DVACHALNSI---------------------PV---ETVKLVAERLRDKSVLVKRYTMERLADIFRGCC 408 (1674)
Q Consensus 364 ~la~~~l~~V---------------------~~---elL~~LaeR~RDKK~~VRkeAm~~La~LY~~~~ 408 (1674)
++-......+ +. -+++.++.-+|+|+..-|.-|+..|..+-+.+-
T Consensus 399 ~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp 467 (1233)
T KOG1824|consen 399 ALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLP 467 (1233)
T ss_pred HHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCc
Confidence 8754332211 11 245788999999999999999999999999874
No 7
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.25 E-value=0.011 Score=79.86 Aligned_cols=135 Identities=21% Similarity=0.282 Sum_probs=102.3
Q ss_pred chhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCC
Q 000319 293 NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS 372 (1674)
Q Consensus 293 ~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~ 372 (1674)
|...|....+.-|+=..--.+.||..+++|...|....|.-.-..++-.++..|++|+---||-|||.-++.......+.
T Consensus 810 f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~ 889 (1692)
T KOG1020|consen 810 FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPEL 889 (1692)
T ss_pred HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHH
Confidence 45555555555555566778999999999999988887764334688899999999999999999999998755444333
Q ss_pred CCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCccccccccchHHHhhhh-ccCCCCc
Q 000319 373 IPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCL-YDKDFGS 439 (1674)
Q Consensus 373 V~~elL~~LaeR~RDKK~~VRkeAm~~La~LY~~~~~~~~~~~~~~~~~~wIPskIL~~~-Y~nD~~~ 439 (1674)
+ .+....+++|+.|--..||+.||+.|-.+|-.+ ..|.-||..+-... .++|-+.
T Consensus 890 ~-~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~-----------pdf~~i~~~cakmlrRv~DEEg 945 (1692)
T KOG1020|consen 890 I-FQYYDQIIERILDTGVSVRKRVIKILRDICEET-----------PDFSKIVDMCAKMLRRVNDEEG 945 (1692)
T ss_pred H-HHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhC-----------CChhhHHHHHHHHHHHhccchh
Confidence 2 345678899999999999999999999998864 24666666555443 3677554
No 8
>PTZ00429 beta-adaptin; Provisional
Probab=98.23 E-value=0.0029 Score=83.52 Aligned_cols=337 Identities=15% Similarity=0.102 Sum_probs=187.7
Q ss_pred HHHHHHHHhhcchhhhhhhhcccccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHH
Q 000319 242 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 321 (1674)
Q Consensus 242 h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve 321 (1674)
|--+..+.+..|++..-++..|...|.+.|+.+|-+|.+++|.+-. ..-.+.+.....+-..|.+|-||...+-
T Consensus 89 YLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~------~~i~e~l~~~lkk~L~D~~pYVRKtAal 162 (746)
T PTZ00429 89 YLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV------SSVLEYTLEPLRRAVADPDPYVRKTAAM 162 (746)
T ss_pred HHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc------HHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 4444455666899999999999999999999999999999996543 2333456666667788999999999999
Q ss_pred HhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHH
Q 000319 322 HVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLA 401 (1674)
Q Consensus 322 ~~~~iL~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VRkeAm~~La 401 (1674)
++..+...+|+.-....+++.|.+.|.|.|..|-..|+.++.++....... +... ...+-
T Consensus 163 ai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~-----l~l~---------------~~~~~ 222 (746)
T PTZ00429 163 GLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK-----IESS---------------NEWVN 222 (746)
T ss_pred HHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh-----hHHH---------------HHHHH
Confidence 999988888864333457778888899999999999999988875433221 1100 11111
Q ss_pred HHHHHHhhhccCCCccccccccchHHHhhhhccCCCCc-hhHHHHhhcCCcCC--CCCHHHH---HHHHHHHHhcCCHHH
Q 000319 402 DIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGS-DTIESVLCGSLFPT--GFSVKDR---VRHWVRIFSGFDRIE 475 (1674)
Q Consensus 402 ~LY~~~~~~~~~~~~~~~~~~wIPskIL~~~Y~nD~~~-~lVE~vL~e~LlP~--~~~~~~R---~~~ll~l~~~LD~~~ 475 (1674)
+++... .+.=.|-.-.||+++..-.+.. .-.+.+ .+.++|. ..++.-- ++.++.+....++.
T Consensus 223 ~Ll~~L----------~e~~EW~Qi~IL~lL~~y~P~~~~e~~~i-l~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~- 290 (746)
T PTZ00429 223 RLVYHL----------PECNEWGQLYILELLAAQRPSDKESAETL-LTRVLPRMSHQNPAVVMGAIKVVANLASRCSQE- 290 (746)
T ss_pred HHHHHh----------hcCChHHHHHHHHHHHhcCCCCcHHHHHH-HHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHH-
Confidence 122211 1122677778888763221111 111112 2223332 1122111 22222222222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhchHHHHHHHHHHh
Q 000319 476 MKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLL 555 (1674)
Q Consensus 476 ~kal~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kL~~~I~~Ls~~fPDp~Ka~~~L~kf~klnD~Ri~kLLk~~i 555 (1674)
.....+ .+.-.-++.+. ...++++=-....|..|...+|.-... .+..|+ |.
T Consensus 291 --~~~~~~------~rl~~pLv~L~-----ss~~eiqyvaLr~I~~i~~~~P~lf~~--~~~~Ff-------------~~ 342 (746)
T PTZ00429 291 --LIERCT------VRVNTALLTLS-----RRDAETQYIVCKNIHALLVIFPNLLRT--NLDSFY-------------VR 342 (746)
T ss_pred --HHHHHH------HHHHHHHHHhh-----CCCccHHHHHHHHHHHHHHHCHHHHHH--HHHhhh-------------cc
Confidence 111111 11112223331 123455544444566666666533221 233332 11
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhccccChhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhC
Q 000319 556 DSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFS 635 (1674)
Q Consensus 556 d~~td~~tv~~a~kELlkkL~~~~~l~e~l~~Ll~RsS~lifNks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~ 635 (1674)
-.+.+| ++...=+++-+| .|.+||..|++.+.....+.+......+..-+..++..+
T Consensus 343 ~~Dp~y--IK~~KLeIL~~L---------------------ane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~ 399 (746)
T PTZ00429 343 YSDPPF--VKLEKLRLLLKL---------------------VTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKV 399 (746)
T ss_pred cCCcHH--HHHHHHHHHHHH---------------------cCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC
Confidence 112223 222222333333 455566666666655433333445566667777788889
Q ss_pred CcCccccHHHHHHHHhhccccchHHHHHHHHHh
Q 000319 636 PLLLGGTEEELVNLLKEENEIIKEGILHVLAKA 668 (1674)
Q Consensus 636 P~lFk~~v~~Li~lL~~~~~~~~~~aLkiLak~ 668 (1674)
|.....++..|+++|....+. +..++.++..+
T Consensus 400 ~~~a~~cV~~Ll~ll~~~~~~-v~e~i~vik~I 431 (746)
T PTZ00429 400 DSVAPDCANLLLQIVDRRPEL-LPQVVTAAKDI 431 (746)
T ss_pred hHHHHHHHHHHHHHhcCCchh-HHHHHHHHHHH
Confidence 999999999999999764433 33455555555
No 9
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.00 E-value=0.0015 Score=83.08 Aligned_cols=117 Identities=16% Similarity=0.161 Sum_probs=99.2
Q ss_pred HHHHHHHHHhhcchhhhhhhhcccccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHH
Q 000319 241 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVL 320 (1674)
Q Consensus 241 ~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v 320 (1674)
.|-.+..++...|+++.-++..|...|.++|+.+|-.|.++++.+-. ..--+.+...-..-..|.+|-||...+
T Consensus 62 ~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~------~~~~~~l~~~v~~ll~~~~~~VRk~A~ 135 (526)
T PF01602_consen 62 GYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRT------PEMAEPLIPDVIKLLSDPSPYVRKKAA 135 (526)
T ss_dssp HHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S------HHHHHHHHHHHHHHHHSSSHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc------cchhhHHHHHHHHHhcCCchHHHHHHH
Confidence 56677788889999888899999999999999999999999999662 233356666677777899999999999
Q ss_pred HHhHHHHhcCCCCCChHH-HHHHHHhhhCCChhHHHHHHHHHHHHh
Q 000319 321 EHVKSCLLTDPSRADAPQ-ILTALCDRLLDFDENVRKQVVAVICDV 365 (1674)
Q Consensus 321 e~~~~iL~s~p~~~~~~e-Ii~~L~~rL~D~DEkVR~aaV~ai~~l 365 (1674)
-++..+....|+. ... +++.|...|.|.|..|+.+|+.+++++
T Consensus 136 ~~l~~i~~~~p~~--~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 136 LALLKIYRKDPDL--VEDELIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHHHHHHCHCC--HHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCHHH--HHHHHHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 9999999888863 334 799999999999999999999999887
No 10
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.87 E-value=0.08 Score=72.18 Aligned_cols=206 Identities=18% Similarity=0.170 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHH--hhcCCCC-CCCCcchHHHHHHHHHhhcchhhhhhhhccccc---ccCCChHH
Q 000319 201 ARRLAMNVIEQCAGKLEAGIKQFLVS--SMSGDSR-PGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGE---LLTDQLDT 274 (1674)
Q Consensus 201 a~~lA~~v~~~~~dkL~~~I~q~f~~--~l~~d~~-~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~E---L~sed~~~ 274 (1674)
.+.++.+.+..-..+|+-++.+.-.. ...|... ......+.-.+|+..-..+-++..+.=|+|..- |..+...+
T Consensus 753 ~~el~~~~v~~~~n~~K~~~~~Ik~~~~~~~~~~~~s~~~d~~~a~li~~~la~~r~f~~sfD~yLk~Il~~l~e~~ial 832 (1692)
T KOG1020|consen 753 SFELAYEKVITVENELKYILSKIKDKEKSGRGPKLNSRFADDDDAKLIVFYLAHARSFSQSFDPYLKLILSVLGENAIAL 832 (1692)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhcchhhhccCcCCCCccccchhHHHHHHHHHhhhHHHHhhHHHHHHHHHHhcCchHHH
Confidence 34666666666565555444332111 0011111 111122334455555555555555554544433 34567999
Q ss_pred HHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHH
Q 000319 275 RLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENV 354 (1674)
Q Consensus 275 Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~~~eIi~~L~~rL~D~DEkV 354 (1674)
|.+|.+.|..|...+. .+-.+|+.=.+--+|++|-+..||-+.|+.++..++++|+ .+.+.-+.+..|..|+---|
T Consensus 833 RtkAlKclS~ive~Dp--~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e--~~~qyY~~i~erIlDtgvsV 908 (1692)
T KOG1020|consen 833 RTKALKCLSMIVEADP--SVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPE--LIFQYYDQIIERILDTGVSV 908 (1692)
T ss_pred HHHHHHHHHHHHhcCh--HhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHH--HHHHHHHHHHhhcCCCchhH
Confidence 9999999999998864 5778999999999999999999999999999999999986 46688899999999999999
Q ss_pred HHHHHHHHHHhhhhhcCCC-CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhh
Q 000319 355 RKQVVAVICDVACHALNSI-PVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLR 410 (1674)
Q Consensus 355 R~aaV~ai~~la~~~l~~V-~~elL~~LaeR~RDKK~~VRkeAm~~La~LY~~~~~~ 410 (1674)
|.-|++.++++....++.. -+++...+..|+-|=--.|.+-+.+.+-++|-.=+..
T Consensus 909 RKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~ 965 (1692)
T KOG1020|consen 909 RKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPE 965 (1692)
T ss_pred HHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCc
Confidence 9999999999866554421 2355666779999998889999999999999865543
No 11
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.47 Score=64.00 Aligned_cols=277 Identities=16% Similarity=0.175 Sum_probs=137.8
Q ss_pred hhhhcCCCcchHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHhhhhhheeccCCch
Q 000319 62 PVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECD 141 (1674)
Q Consensus 62 ~~LL~HkD~~Vr~~vAcCLadIlRI~APdAPytdd~lkli~~~f~~L~d~~~p~f~q~~~lLesLA~vks~vlm~DL~~~ 141 (1674)
..+++-.-.-||--.|--+|+|-|---|+ -| .+.|.++|++... ++.+.-.-.++||.++.++..-. +-+--
T Consensus 86 ~~~~~E~~~~vr~k~~dviAeia~~~l~e-~W-Pell~~L~q~~~S---~~~~~rE~al~il~s~~~~~~~~---~~~~~ 157 (1075)
T KOG2171|consen 86 EIIQSETEPSVRHKLADVIAEIARNDLPE-KW-PELLQFLFQSTKS---PNPSLRESALLILSSLPETFGNT---LQPHL 157 (1075)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHhcccc-ch-HHHHHHHHHHhcC---CCcchhHHHHHHHHhhhhhhccc---cchhH
Confidence 44555666678888888888888887777 22 3555566555432 33333344566666665543211 11112
Q ss_pred HHHHHHHHHHHHhhcC------------------CCh------hhHHHHHHHHHHHHhccccc-ccHHHHHHHHHhhc--
Q 000319 142 ELVNEMYSTFFAVASD------------------DHP------ESVLSSMQTIMIVLLEESED-IQEDLLVILLSALG-- 194 (1674)
Q Consensus 142 ~Li~~lF~~ff~iv~~------------------~~~------~~V~~~m~~IL~~vI~Ese~-vp~~lLd~IL~~l~-- 194 (1674)
+-+..||...+.-.+. +.+ ..+...|..+|..+|...++ ...++++.+..-++
T Consensus 158 ~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~ 237 (1075)
T KOG2171|consen 158 DDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESE 237 (1075)
T ss_pred HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhc
Confidence 3444444444332110 000 12334455555555555433 12222222221110
Q ss_pred -------------------CCC--cHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhcc
Q 000319 195 -------------------RNK--NDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSP 253 (1674)
Q Consensus 195 -------------------~~~--~~~a~~lA~~v~~~~~dkL~~~I~q~f~~~l~~d~~~~~~~~~~h~Li~eL~~~~P 253 (1674)
.++ .++.+.+|..++..++.. .|.-+..... -.|.|+..+....+
T Consensus 238 pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~-Ap~~~k~~~~-------------~~~~lv~~~l~~mt 303 (1075)
T KOG2171|consen 238 PKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEY-APAMCKKLAL-------------LGHTLVPVLLAMMT 303 (1075)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHh-hHHHhhhchh-------------hhccHHHHHHHhcC
Confidence 111 124444444444444433 2222111111 23455555555555
Q ss_pred hhhhhhhhcccccccCCC------hHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHH
Q 000319 254 QILSGVVPYLTGELLTDQ------LDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCL 327 (1674)
Q Consensus 254 ~lL~~ViP~Le~EL~sed------~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL 327 (1674)
++..- ++++.+|+ ...=..|.+.|-++-..-|- -.-.|.+|..+-.=..-.+..=|.+.+-+...|-
T Consensus 304 e~~~D-----~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g--~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~ 376 (1075)
T KOG2171|consen 304 EEEDD-----DEWSNEDDLDEDDEETPYRAAEQALDRLALHLGG--KQVLPPLFEALEAMLQSTEWKERHAALLALSVIA 376 (1075)
T ss_pred Ccccc-----hhhccccccccccccCcHHHHHHHHHHHHhcCCh--hhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 54443 33344332 22345677777766544321 2334555554444444455666666555554332
Q ss_pred hcCCC--CCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhh
Q 000319 328 LTDPS--RADAPQILTALCDRLLDFDENVRKQVVAVICDVAC 367 (1674)
Q Consensus 328 ~s~p~--~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~ 367 (1674)
.--+. .....+|+..+..-|.||+.+||.|||.+|++++.
T Consensus 377 EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~st 418 (1075)
T KOG2171|consen 377 EGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMST 418 (1075)
T ss_pred cccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhh
Confidence 21110 01245789999999999999999999999999876
No 12
>PRK09687 putative lyase; Provisional
Probab=97.53 E-value=0.0005 Score=81.25 Aligned_cols=145 Identities=17% Similarity=0.136 Sum_probs=103.0
Q ss_pred HHHHHHHHhhcchhhhhhhhcccccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhh-hcCCChhHHHHHH
Q 000319 242 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKR-LTDRIVAVRMSVL 320 (1674)
Q Consensus 242 h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R-~~D~s~~VR~~~v 320 (1674)
+..+..|..+-.. .|++.+..-+.+++..+|..|+..||.| +.++.. -+.++.....- .+|.++.||...+
T Consensus 41 ~~A~~aL~~~~~~---~~~~~l~~ll~~~d~~vR~~A~~aLg~l-g~~~~~----~~~a~~~L~~l~~~D~d~~VR~~A~ 112 (280)
T PRK09687 41 ISSIRVLQLRGGQ---DVFRLAIELCSSKNPIERDIGADILSQL-GMAKRC----QDNVFNILNNLALEDKSACVRASAI 112 (280)
T ss_pred HHHHHHHHhcCcc---hHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCccc----hHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 4556666665432 2333344446788999999999999985 433221 12333333333 4899999999999
Q ss_pred HHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHH
Q 000319 321 EHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERL 400 (1674)
Q Consensus 321 e~~~~iL~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VRkeAm~~L 400 (1674)
...+++=...+. ....++..+...+.|.+..||.+|+.+++.+. +.+.+..|...+.|..+.||..|+..|
T Consensus 113 ~aLG~~~~~~~~--~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~-------~~~ai~~L~~~L~d~~~~VR~~A~~aL 183 (280)
T PRK09687 113 NATGHRCKKNPL--YSPKIVEQSQITAFDKSTNVRFAVAFALSVIN-------DEAAIPLLINLLKDPNGDVRNWAAFAL 183 (280)
T ss_pred HHHhcccccccc--cchHHHHHHHHHhhCCCHHHHHHHHHHHhccC-------CHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 999885222221 12367788889999999999999999886542 355678888999999999999999999
Q ss_pred HHH
Q 000319 401 ADI 403 (1674)
Q Consensus 401 a~L 403 (1674)
|.+
T Consensus 184 g~~ 186 (280)
T PRK09687 184 NSN 186 (280)
T ss_pred hcC
Confidence 998
No 13
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.05 Score=69.95 Aligned_cols=390 Identities=13% Similarity=0.153 Sum_probs=198.8
Q ss_pred ccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhh
Q 000319 267 LLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDR 346 (1674)
Q Consensus 267 L~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~~~eIi~~L~~r 346 (1674)
|.+.....-+.|.+-+=-|++. |-+... +|-+-.+-..-++++|+..+-=+.-+.-..+|+... -=+..+++-
T Consensus 44 LdSnkd~~KleAmKRIia~iA~-G~dvS~----~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL--LSIntfQk~ 116 (968)
T KOG1060|consen 44 LDSNKDSLKLEAMKRIIALIAK-GKDVSL----LFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL--LSINTFQKA 116 (968)
T ss_pred HhccccHHHHHHHHHHHHHHhc-CCcHHH----HHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee--eeHHHHHhh
Confidence 5567777777777665555554 434444 455555566667888887765555554556776432 236899999
Q ss_pred hCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCccccccccchH
Q 000319 347 LLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPG 426 (1674)
Q Consensus 347 L~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VRkeAm~~La~LY~~~~~~~~~~~~~~~~~~wIPs 426 (1674)
|.|+...+|.-|+.++..+-.. .|-.=+|-++.+-++|-.+-||+.|..++-++|..--.. ..++..+=.
T Consensus 117 L~DpN~LiRasALRvlSsIRvp---~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~-------k~qL~e~I~ 186 (968)
T KOG1060|consen 117 LKDPNQLIRASALRVLSSIRVP---MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQ-------KDQLEEVIK 186 (968)
T ss_pred hcCCcHHHHHHHHHHHHhcchh---hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhh-------HHHHHHHHH
Confidence 9999999999988887654332 233336778999999999999999999999999853110 011111111
Q ss_pred HHhhhhccCCCCchhHHHHh--hcCCcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000319 427 KILRCLYDKDFGSDTIESVL--CGSLFPTGFSV-KDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMH 503 (1674)
Q Consensus 427 kIL~~~Y~nD~~~~lVE~vL--~e~LlP~~~~~-~~R~~~ll~l~~~LD~~~~kal~~il~~k~~l~~~~~~~l~l~~~~ 503 (1674)
++| .++++- .|-.++ |+.+-|-.++- ..--+++++++-.+|+.+.-.+.
T Consensus 187 ~LL---aD~spl--VvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI----------------------- 238 (968)
T KOG1060|consen 187 KLL---ADRSPL--VVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLI----------------------- 238 (968)
T ss_pred HHh---cCCCCc--chhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHH-----------------------
Confidence 111 122111 111110 11111111100 11233444444444443332222
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHH-HhhchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCc-h
Q 000319 504 QDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLIL-DQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHR-L 581 (1674)
Q Consensus 504 ~~~d~~ei~~kL~~~I~~Ls~~fPDp~Ka~~~L~kf-~klnD~Ri~kLLk~~id~~td~~tv~~a~kELlkkL~~~~~-l 581 (1674)
...++|--..||+|+.....++.= ..-|....|.-+++=+..+.|.+-+-++.+=|+. +.++ +
T Consensus 239 ------------~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~---S~n~sV 303 (968)
T KOG1060|consen 239 ------------NMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQ---SRNPSV 303 (968)
T ss_pred ------------HHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHh---cCCcHH
Confidence 222344335566665543333211 0111111222222212224444443333333322 2222 2
Q ss_pred HHHHHHHHHhhhccccChhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhcccc-chHH
Q 000319 582 YDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEI-IKEG 660 (1674)
Q Consensus 582 ~e~l~~Ll~RsS~lifNks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v~~Li~lL~~~~~~-~~~~ 660 (1674)
.-.+-.++|-.+|.-=+.--++.|+..+...... ....+.-+..||...|++|..|.+... +...+++ +.-.
T Consensus 304 VmA~aql~y~lAP~~~~~~i~kaLvrLLrs~~~v-----qyvvL~nIa~~s~~~~~lF~P~lKsFf--v~ssDp~~vk~l 376 (968)
T KOG1060|consen 304 VMAVAQLFYHLAPKNQVTKIAKALVRLLRSNREV-----QYVVLQNIATISIKRPTLFEPHLKSFF--VRSSDPTQVKIL 376 (968)
T ss_pred HHHHHhHHHhhCCHHHHHHHHHHHHHHHhcCCcc-----hhhhHHHHHHHHhcchhhhhhhhhceE--eecCCHHHHHHH
Confidence 2223345666666655555567777755432111 122334455678888999999977653 3344443 3334
Q ss_pred HHHHHHHhhcchhhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhh
Q 000319 661 ILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLE 730 (1674)
Q Consensus 661 aLkiLak~~k~i~e~~~~~~s~l~~~L~~lal~Gtp~qAKyAvr~Laa~~~~~~~~~~~~L~~~L~~~L~ 730 (1674)
=|++|+..... . .-+.+..-|+.|...-...-|--||++|+.+...-+.+ ..-.++.|+..+.
T Consensus 377 KleiLs~La~e---s---ni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv-~~tCL~gLv~Lls 439 (968)
T KOG1060|consen 377 KLEILSNLANE---S---NISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSV-TDTCLNGLVQLLS 439 (968)
T ss_pred HHHHHHHHhhh---c---cHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCch-hhHHHHHHHHHHh
Confidence 46666655422 0 01123344555655555566667888887555443221 1123455555554
No 14
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.48 E-value=0.095 Score=66.85 Aligned_cols=239 Identities=13% Similarity=0.230 Sum_probs=158.0
Q ss_pred hHHHHHHHHHhhcchhhhh-hhhcccccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHH
Q 000319 240 DYHEVIYDVYRCSPQILSG-VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMS 318 (1674)
Q Consensus 240 ~~h~Li~eL~~~~P~lL~~-ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~ 318 (1674)
++-..+..+++.+|+++.. ++|.|..-|...+..++..|+.++..+ ..++..+..-.+.++....+...+.+|-+++.
T Consensus 133 ~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~ 211 (526)
T PF01602_consen 133 KAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIK 211 (526)
T ss_dssp HHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHH
Confidence 4677888999999999988 799999999989999999999999999 32221122344555555555558999999999
Q ss_pred HHHHhHHHHhcCCCCCCh--HHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHH
Q 000319 319 VLEHVKSCLLTDPSRADA--PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYT 396 (1674)
Q Consensus 319 ~ve~~~~iL~s~p~~~~~--~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VRkeA 396 (1674)
.++....+....+. .. ..+++.+...|......|+.+++.++..+..... +-...+..+..-+.++.+.||-.|
T Consensus 212 il~~l~~~~~~~~~--~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~--~~~~~~~~L~~lL~s~~~nvr~~~ 287 (526)
T PF01602_consen 212 ILRLLRRYAPMEPE--DADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE--LLQKAINPLIKLLSSSDPNVRYIA 287 (526)
T ss_dssp HHHHHTTSTSSSHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH--HHHHHHHHHHHHHTSSSHHHHHHH
T ss_pred HHHHHHhcccCChh--hhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH--HHHhhHHHHHHHhhcccchhehhH
Confidence 99998765444332 23 4688999999999999999999999987655433 223456677888889999999999
Q ss_pred HHHHHHHHHHHhhhccCCCccccccccchHHHhhhhccCCCCchhHHHHhhcCCcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 000319 397 MERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEM 476 (1674)
Q Consensus 397 m~~La~LY~~~~~~~~~~~~~~~~~~wIPskIL~~~Y~nD~~~~lVE~vL~e~LlP~~~~~~~R~~~ll~l~~~LD~~~~ 476 (1674)
+..|..+-..+ |..+.+..+ .+..+. ...+..-|...+--++.-.++...
T Consensus 288 L~~L~~l~~~~-----------------~~~v~~~~~-------~~~~l~------~~~d~~Ir~~~l~lL~~l~~~~n~ 337 (526)
T PF01602_consen 288 LDSLSQLAQSN-----------------PPAVFNQSL-------ILFFLL------YDDDPSIRKKALDLLYKLANESNV 337 (526)
T ss_dssp HHHHHHHCCHC-----------------HHHHGTHHH-------HHHHHH------CSSSHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHhhccc-----------------chhhhhhhh-------hhheec------CCCChhHHHHHHHHHhhcccccch
Confidence 98887775543 222222110 011111 112334455555555555666544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCc
Q 000319 477 KALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEP 529 (1674)
Q Consensus 477 kal~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kL~~~I~~Ls~~fPDp 529 (1674)
+. +-..+.+|+. +..+++++..+...|..++..||..
T Consensus 338 ~~----------Il~eL~~~l~------~~~d~~~~~~~i~~I~~la~~~~~~ 374 (526)
T PF01602_consen 338 KE----------ILDELLKYLS------ELSDPDFRRELIKAIGDLAEKFPPD 374 (526)
T ss_dssp HH----------HHHHHHHHHH------HC--HHHHHHHHHHHHHHHHHHGSS
T ss_pred hh----------HHHHHHHHHH------hccchhhhhhHHHHHHHHHhccCch
Confidence 32 2233444441 1234557888888888888877543
No 15
>PRK09687 putative lyase; Provisional
Probab=97.36 E-value=0.0014 Score=77.67 Aligned_cols=129 Identities=16% Similarity=0.069 Sum_probs=99.5
Q ss_pred hhhhccccc-ccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCCh
Q 000319 258 GVVPYLTGE-LLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADA 336 (1674)
Q Consensus 258 ~ViP~Le~E-L~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~~ 336 (1674)
.++|.|..- +...+..+|..|+..||.+-.. +. ..-+.+...+..-..|.++.||...+...+.| . .
T Consensus 90 ~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~-~~---~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----~----~ 157 (280)
T PRK09687 90 NVFNILNNLALEDKSACVRASAINATGHRCKK-NP---LYSPKIVEQSQITAFDKSTNVRFAVAFALSVI----N----D 157 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhccccc-cc---ccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc----C----C
Confidence 455566554 4567899999999999998432 21 11244556677778899999999999988642 1 1
Q ss_pred HHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000319 337 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 403 (1674)
Q Consensus 337 ~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VRkeAm~~La~L 403 (1674)
.+.+..|...|.|+|..||..|+.+++.+.. -+.+.+..|...+.|....||..|+.+||++
T Consensus 158 ~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~-----~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 EAAIPLLINLLKDPNGDVRNWAAFALNSNKY-----DNPDIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 3688999999999999999999999987622 2446677788889999999999999999984
No 16
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.2 Score=65.03 Aligned_cols=353 Identities=18% Similarity=0.153 Sum_probs=204.6
Q ss_pred hhhhhhcccccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCC
Q 000319 256 LSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRAD 335 (1674)
Q Consensus 256 L~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~ 335 (1674)
|.-+.-.|...|++.+--+==+|.-+||.|++. .++. ++.-.--.-.+-.++-||...+-|+-.++..-|+.
T Consensus 105 llLltNslknDL~s~nq~vVglAL~alg~i~s~---Emar---dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l-- 176 (866)
T KOG1062|consen 105 LLLLTNSLKNDLNSSNQYVVGLALCALGNICSP---EMAR---DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL-- 176 (866)
T ss_pred HHHHHHHHHhhccCCCeeehHHHHHHhhccCCH---HHhH---HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH--
Confidence 333445778899999988888999999999975 2333 33333333333478999999999999999988863
Q ss_pred hHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCC
Q 000319 336 APQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGS 415 (1674)
Q Consensus 336 ~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VRkeAm~~La~LY~~~~~~~~~~~ 415 (1674)
.+-++.....+|.|-+..|=.++|.-+.++...+++ .+. +-|| ....|-.+-+.... +.
T Consensus 177 ~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~-----~l~----~fr~--------l~~~lV~iLk~l~~----~~ 235 (866)
T KOG1062|consen 177 VEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPD-----ALS----YFRD--------LVPSLVKILKQLTN----SG 235 (866)
T ss_pred HHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHH-----HHH----HHHH--------HHHHHHHHHHHHhc----CC
Confidence 456778889999999999999988888776655432 221 1111 22223333332211 11
Q ss_pred ccc-cccccchHHHhhhhccCCCCchhHHHHhhcCCcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 000319 416 INQ-NEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQ 494 (1674)
Q Consensus 416 ~~~-~~~~wIPskIL~~~Y~nD~~~~lVE~vL~e~LlP~~~~~~~R~~~ll~l~~~LD~~~~kal~~il~~k~~l~~~~~ 494 (1674)
... -.+..||.=.|+ -|.-|++.+++.-|+.+...+..+|.+..+
T Consensus 236 yspeydv~gi~dPFLQ----------------------------i~iLrlLriLGq~d~daSd~M~DiLaqvat------ 281 (866)
T KOG1062|consen 236 YSPEYDVHGISDPFLQ----------------------------IRILRLLRILGQNDADASDLMNDILAQVAT------ 281 (866)
T ss_pred CCCccCccCCCchHHH----------------------------HHHHHHHHHhcCCCccHHHHHHHHHHHHHh------
Confidence 111 124444444443 266688888888888888887777765322
Q ss_pred HHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCch---HHHHHHHHHHhhchHHHHH-HHHHHhcC-CCCHHHHHHHHH
Q 000319 495 RYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPA---KAEENFLILDQLKDANVWK-ILMNLLDS-NTSFDQAFTGRD 569 (1674)
Q Consensus 495 ~~l~l~~~~~~~d~~ei~~kL~~~I~~Ls~~fPDp~---Ka~~~L~kf~klnD~Ri~k-LLk~~id~-~td~~tv~~a~k 569 (1674)
..+...-.-.+-|-.|++-|....|++. .|...|-+|-.=.|.++.+ .|..++-. +.+-.-+..=+.
T Consensus 282 --------ntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~ 353 (866)
T KOG1062|consen 282 --------NTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRS 353 (866)
T ss_pred --------cccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHH
Confidence 0011111122335556666666666655 4566666776545665543 23333221 233333333345
Q ss_pred HHHHHhcCCC-chH-HHHHHHHHhhhccccChhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccH-HHH
Q 000319 570 DLLKILGAKH-RLY-DFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE-EEL 646 (1674)
Q Consensus 570 ELlkkL~~~~-~l~-e~l~~Ll~RsS~lifNks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v-~~L 646 (1674)
-++-.|.+.- ++. .++. .++.++|.+||..++++ ||..+-.. ++-|++.+ ..+
T Consensus 354 tIleCL~DpD~SIkrralE-----Ls~~lvn~~Nv~~mv~e------------------Ll~fL~~~-d~~~k~~~as~I 409 (866)
T KOG1062|consen 354 TILECLKDPDVSIKRRALE-----LSYALVNESNVRVMVKE------------------LLEFLESS-DEDFKADIASKI 409 (866)
T ss_pred HHHHHhcCCcHHHHHHHHH-----HHHHHhccccHHHHHHH------------------HHHHHHhc-cHHHHHHHHHHH
Confidence 5555555542 111 1121 35567888888887764 34444433 44555543 344
Q ss_pred HHHHhhccc---cchHHHHHHHHHhhcchhhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhc
Q 000319 647 VNLLKEENE---IIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAIT 710 (1674)
Q Consensus 647 i~lL~~~~~---~~~~~aLkiLak~~k~i~e~~~~~~s~l~~~L~~lal~Gtp~qAKyAvr~Laa~~ 710 (1674)
+.+.+.=.| .-...++++|..+|.++++. ...-|.++.-+|.+..=.|+++-|.+..
T Consensus 410 ~~laEkfaP~k~W~idtml~Vl~~aG~~V~~d-------v~~nll~LIa~~~~e~~~y~~~rLy~a~ 469 (866)
T KOG1062|consen 410 AELAEKFAPDKRWHIDTMLKVLKTAGDFVNDD-------VVNNLLRLIANAFQELHEYAVLRLYLAL 469 (866)
T ss_pred HHHHHhcCCcchhHHHHHHHHHHhcccccchh-------hHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 444333222 34566888888888776654 2334556667777777778888876433
No 17
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.22 E-value=0.027 Score=76.84 Aligned_cols=262 Identities=16% Similarity=0.134 Sum_probs=143.5
Q ss_pred hhhcCCCcchHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHhhhhhheeccCCchH
Q 000319 63 VLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDE 142 (1674)
Q Consensus 63 ~LL~HkD~~Vr~~vAcCLadIlRI~APdAPytdd~lkli~~~f~~L~d~~~p~f~q~~~lLesLA~vks~vlm~DL~~~~ 142 (1674)
.+|++.|.+||..++-.|.++- .++.+..++.. |.|++.. -+...++.|.++- -.+++..
T Consensus 628 ~~L~D~d~~VR~~Av~~L~~~~---------~~~~~~~L~~a---L~D~d~~---VR~~Aa~aL~~l~-----~~~~~~~ 687 (897)
T PRK13800 628 PYLADPDPGVRRTAVAVLTETT---------PPGFGPALVAA---LGDGAAA---VRRAAAEGLRELV-----EVLPPAP 687 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhhhc---------chhHHHHHHHH---HcCCCHH---HHHHHHHHHHHHH-----hccCchH
Confidence 4568999999999999999874 23344555544 3554332 2335555555431 1223334
Q ss_pred HHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCCCc----HHHHHHHHHHHHHhhhhhhH
Q 000319 143 LVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKN----DTARRLAMNVIEQCAGKLEA 218 (1674)
Q Consensus 143 Li~~lF~~ff~iv~~~~~~~V~~~m~~IL~~vI~Ese~vp~~lLd~IL~~l~~~~~----~~a~~lA~~v~~~~~dkL~~ 218 (1674)
.+..+++. ....|.....+.|..+-.. . ...++..+..... .+++.|+.. +.. +
T Consensus 688 ~L~~~L~~--------~d~~VR~~A~~aL~~~~~~--~-----~~~l~~~L~D~d~~VR~~Av~aL~~~------~~~-~ 745 (897)
T PRK13800 688 ALRDHLGS--------PDPVVRAAALDVLRALRAG--D-----AALFAAALGDPDHRVRIEAVRALVSV------DDV-E 745 (897)
T ss_pred HHHHHhcC--------CCHHHHHHHHHHHHhhccC--C-----HHHHHHHhcCCCHHHHHHHHHHHhcc------cCc-H
Confidence 44444322 2346777777777664321 1 1234444432211 133333321 111 1
Q ss_pred HHHHHHHHhhcCCCCCCCCcch--HHHHHHHHHhhcchhhhhhhhcccccccCCChHHHHHHHHHHHHhhcCCCCCchhh
Q 000319 219 GIKQFLVSSMSGDSRPGHSHID--YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQ 296 (1674)
Q Consensus 219 ~I~q~f~~~l~~d~~~~~~~~~--~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~~ 296 (1674)
.+..++ ..+ +..++ +-.-|-.+..-.+.. +|.|..-|..++..+|..|+..||.+-..+
T Consensus 746 ~l~~~l----~D~----~~~VR~~aa~aL~~~~~~~~~~----~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~------- 806 (897)
T PRK13800 746 SVAGAA----TDE----NREVRIAVAKGLATLGAGGAPA----GDAVRALTGDPDPLVRAAALAALAELGCPP------- 806 (897)
T ss_pred HHHHHh----cCC----CHHHHHHHHHHHHHhccccchh----HHHHHHHhcCCCHHHHHHHHHHHHhcCCcc-------
Confidence 222211 111 11111 112233332222211 344445566678888888888888773321
Q ss_pred cHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHH
Q 000319 297 FHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE 376 (1674)
Q Consensus 297 y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~e 376 (1674)
.+....+.-..|.++.||...+++...+ +. .+.+..|...|.|++..||.+|+.++..+ ..+..
T Consensus 807 --~~~~~l~~aL~d~d~~VR~~Aa~aL~~l----~~----~~a~~~L~~~L~D~~~~VR~~A~~aL~~~------~~~~~ 870 (897)
T PRK13800 807 --DDVAAATAALRASAWQVRQGAARALAGA----AA----DVAVPALVEALTDPHLDVRKAAVLALTRW------PGDPA 870 (897)
T ss_pred --hhHHHHHHHhcCCChHHHHHHHHHHHhc----cc----cchHHHHHHHhcCCCHHHHHHHHHHHhcc------CCCHH
Confidence 1112233445677888888888887641 11 24667788888888888888888887664 23455
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHH
Q 000319 377 TVKLVAERLRDKSVLVKRYTMERLA 401 (1674)
Q Consensus 377 lL~~LaeR~RDKK~~VRkeAm~~La 401 (1674)
....|...+.|....||++|...|.
T Consensus 871 a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 871 ARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 6667778888888888888888875
No 18
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.06 E-value=2.6 Score=57.32 Aligned_cols=437 Identities=19% Similarity=0.187 Sum_probs=213.0
Q ss_pred HHHHHHHHHhhcchhhhhhhhcccccccCCChHHHHHHHHHHHHhhcCC--CCC---chhhcHHHHHHHHhhhcCCChhH
Q 000319 241 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP--GSA---NNEQFHSVFSEFLKRLTDRIVAV 315 (1674)
Q Consensus 241 ~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~--~~~---~a~~y~~~w~~fL~R~~D~s~~V 315 (1674)
.-..+.+|-..+|.++..=+..|-.-|..+.-..|-..++.+|.|-..- +.+ ..+.-++
T Consensus 295 v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~---------------- 358 (1251)
T KOG0414|consen 295 VGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRD---------------- 358 (1251)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHH----------------
Confidence 4578899999999999998888888899999999999999999987642 111 1112222
Q ss_pred HHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCH----HHHHHHHHhhccCChh
Q 000319 316 RMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV----ETVKLVAERLRDKSVL 391 (1674)
Q Consensus 316 R~~~ve~~~~iL~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~----elL~~LaeR~RDKK~~ 391 (1674)
++++.|.+|+.|.-.-||..|.+++..+-. .+.+|. +++..+..|+-||..-
T Consensus 359 ----------------------~~le~l~erl~Dvsa~vRskVLqv~~~l~~--~~s~p~~~~~eV~~la~grl~DkSsl 414 (1251)
T KOG0414|consen 359 ----------------------ELLELLRERLLDVSAYVRSKVLQVFRRLFQ--QHSIPLGSRTEVLELAIGRLEDKSSL 414 (1251)
T ss_pred ----------------------HHHHHHHHHhhcccHHHHHHHHHHHHHHHH--ccCCCccHHHHHHHHHhcccccccHH
Confidence 244444444444444444444444433221 122222 3445555666666666
Q ss_pred HHHHHHHHHHHHHHH------------------HhhhccC--CCccccccccchHHHhhhhccCCCCchhHHHHhhcCCc
Q 000319 392 VKRYTMERLADIFRG------------------CCLRNFN--GSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLF 451 (1674)
Q Consensus 392 VRkeAm~~La~LY~~------------------~~~~~~~--~~~~~~~~~wIPskIL~~~Y~nD~~~~lVE~vL~e~Ll 451 (1674)
||+.||..+..+-.. +....+. .+...-.=..+++--.- -|..-.. .++..=+..--
T Consensus 415 VRk~Ai~Ll~~~L~~~Pfs~~~~~~~~~~~~E~~~~~~e~~~e~t~~l~~e~~~~~~s~-n~~~vi~--~~~~~~~~~~~ 491 (1251)
T KOG0414|consen 415 VRKNAIQLLSSLLDRHPFSSELRSDDLRAKLEKELQKLEEELESTEHLEEEEMTSNRSE-NVKGVIE--DAEKDSTTEKN 491 (1251)
T ss_pred HHHHHHHHHHHHHhcCCchhhhcchhhhhhHHHHHHhhhhhcccccccchhhccchhhh-hccccee--echhhhhhhcc
Confidence 666666666555442 2222110 00000000000000000 0000000 00000000001
Q ss_pred CCCCCHHHH-HH-HHHHHHhcCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcCCCcHHHHHHHHHHHHHHHh
Q 000319 452 PTGFSVKDR-VR-HWVRIFSGFDRI----EMKALEKILEQKQRLQQEMQRYLSLR-QMHQDGDAPEIQKKILFCFRVMSR 524 (1674)
Q Consensus 452 P~~~~~~~R-~~-~ll~l~~~LD~~----~~kal~~il~~k~~l~~~~~~~l~l~-~~~~~~d~~ei~~kL~~~I~~Ls~ 524 (1674)
|.......- .. .+..-....+.. ..+++-+++...-++...|.+-+... +.--.+...+|+..|... .+|.
T Consensus 492 q~~ss~~~~~e~~~~~~~~~s~~~~~~i~q~~~~vq~l~d~~sf~~~ms~~~~ii~~ll~s~t~teV~E~Idfl--~~c~ 569 (1251)
T KOG0414|consen 492 QLESSDNKQEEHCLLENEVESVPAENEIMQLKALVQFLEDAISFSDEMSEAIPIISQLLFSKTTTEVKEAIDFL--VRCK 569 (1251)
T ss_pred ccccccccchhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH--HHHH
Confidence 110000000 00 000000011111 11223333333333333333333321 111234455666655432 2345
Q ss_pred hcCCchHHHHHHHHHHhh---chHHHHHHHHHH-------hcCCCCHHHHHHHHHHHHHHhcC-----CCchHHHHHHHH
Q 000319 525 SFAEPAKAEENFLILDQL---KDANVWKILMNL-------LDSNTSFDQAFTGRDDLLKILGA-----KHRLYDFLSTLS 589 (1674)
Q Consensus 525 ~fPDp~Ka~~~L~kf~kl---nD~Ri~kLLk~~-------id~~td~~tv~~a~kELlkkL~~-----~~~l~e~l~~Ll 589 (1674)
.| +..-|+.++++.-.| +|..++.++-.| .+++..-.+.....+-|++.+-+ .+++-+.+..|+
T Consensus 570 ~F-~I~gae~~irkMl~LVWskd~~i~e~v~~ayk~l~~~~~~n~~~~e~~~ia~NL~~l~~~~s~~d~~slE~vl~~lv 648 (1251)
T KOG0414|consen 570 QF-GIDGAEFGIRKMLPLVWSKDKEIREAVENAYKQLYFRPDGNSKASEASSIAQNLSKLLIDASIGDLTSLEEVLCELV 648 (1251)
T ss_pred Hh-CCCcHHHHHHHHhhhhhCCCccHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence 55 455567777766553 566666555555 34445544542233334444322 233333333333
Q ss_pred HhhhccccChhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccccchHHHHHHHHHhh
Q 000319 590 MKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAG 669 (1674)
Q Consensus 590 ~RsS~lifNks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v~~Li~lL~~~~~~~~~~aLkiLak~~ 669 (1674)
. --.|+...|..|.......+.+.......-++.+|-++|...|++-..+.+.|+++=.. .+.....+|..++.++
T Consensus 649 ~---~~~Id~~Vi~~Lw~~ftlq~~~~~~~q~~~sl~iL~M~s~s~~~Iv~~~~~~lv~iglg-~p~l~~~~L~~~s~i~ 724 (1251)
T KOG0414|consen 649 A---RGYIDAAVINKLWEIFTLQKKGTTNEQSRGSLIILGMASRSKPSIVLANLDLLVQIGLG-EPRLAVDVLARYSNIV 724 (1251)
T ss_pred h---CCCccHHHHHHHHHHHHHHhccCchhhhccceeehhhhhccChhhhhhhhHHHHHhccC-cHHHHHHHHHHHHHhh
Confidence 3 45678888888888764433332211223467899999999999999998887765333 3445566777776554
Q ss_pred c-chh----hh--h-hcccchHHHHHHHHhhcCCh-------HHHHHHHHHHHhhcCCCccchHHHHHHHHHHh
Q 000319 670 G-TIR----EQ--L-AATSSSVDLLLERLCLEGSR-------RQAKYAVHALAAITKDDGLKSLSVLYKRLVDM 728 (1674)
Q Consensus 670 k-~i~----e~--~-~~~~s~l~~~L~~lal~Gtp-------~qAKyAvr~Laa~~~~~~~~~~~~L~~~L~~~ 728 (1674)
- .+. .. + .+....+..+|+.+-..|-+ .-|-.|+.+|..+...++.. ...|+..+.++
T Consensus 725 ~~r~~~~~~~r~~f~~~~~~~L~k~L~~l~~~~~~~~d~~~~~~~e~ais~Iy~is~~Pe~l-a~~li~~~~~~ 797 (1251)
T KOG0414|consen 725 DPRKLEDAYSRPKFNLEQEEVLFKILEKLLFFEFMKADDDWFGVAEVAISAIYSISMLPEVL-ATQLIRKLLKQ 797 (1251)
T ss_pred cccccchhhccccccCchHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHhcChHHH-HHHHHHHHHHH
Confidence 1 111 00 1 12234677778777666421 56777888888888766432 23345555444
No 19
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.98 E-value=0.024 Score=62.70 Aligned_cols=94 Identities=15% Similarity=0.161 Sum_probs=84.9
Q ss_pred ChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChh
Q 000319 312 IVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVL 391 (1674)
Q Consensus 312 s~~VR~~~ve~~~~iL~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~ 391 (1674)
+|.||.-++-..+++...+|. .....++.+..+|.|+++.||..|+.++..+....+-.+...++..+...+.|..+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~ 78 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPE 78 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHH
Confidence 478999999999999998885 345788899999999999999999999999999888888888878888899999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 000319 392 VKRYTMERLADIFRGC 407 (1674)
Q Consensus 392 VRkeAm~~La~LY~~~ 407 (1674)
||..|...+..+....
T Consensus 79 Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 79 IRSLARSFFSELLKKR 94 (178)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998874
No 20
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.95 E-value=0.69 Score=61.10 Aligned_cols=540 Identities=17% Similarity=0.178 Sum_probs=272.4
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHhhcC--C-CCCCCCcch-HHHHHHHHHhhcchhhhhhhhcccccccCC--C--
Q 000319 200 TARRLAMNVIEQCAGKLEAGIKQFLVSSMSG--D-SRPGHSHID-YHEVIYDVYRCSPQILSGVVPYLTGELLTD--Q-- 271 (1674)
Q Consensus 200 ~a~~lA~~v~~~~~dkL~~~I~q~f~~~l~~--d-~~~~~~~~~-~h~Li~eL~~~~P~lL~~ViP~Le~EL~se--d-- 271 (1674)
.++.+-..+++...+-+..++-..+..+++. | +.+++..+. .--+..-|-.+.|+...+-+|-|..-+.+- |
T Consensus 454 ~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~f 533 (1233)
T KOG1824|consen 454 GCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPF 533 (1233)
T ss_pred hHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCch
Confidence 6788888888888888887776666665542 2 111111222 233444555667777777666654433211 1
Q ss_pred hHHHHHHHHHHHHhhcC-----C--CCCchhhcHHHHHHHHhhh--cCCChhHHHHHHHHhHHHHhcCCC--CCChHHHH
Q 000319 272 LDTRLKAVGLVGDLFAV-----P--GSANNEQFHSVFSEFLKRL--TDRIVAVRMSVLEHVKSCLLTDPS--RADAPQIL 340 (1674)
Q Consensus 272 ~~~Rl~At~llG~mfs~-----~--~~~~a~~y~~~w~~fL~R~--~D~s~~VR~~~ve~~~~iL~s~p~--~~~~~eIi 340 (1674)
-.+--.|..+.+++... + +.++......+|.+-+.|+ +|.+-+||...+.+.++++.+-.+ +.+.+-++
T Consensus 534 yKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L 613 (1233)
T KOG1824|consen 534 YKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTL 613 (1233)
T ss_pred HhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 12222233333333321 1 3455666678899888886 699999999999999998887433 23445678
Q ss_pred HHHHhhhCCChhHHHHHHHHHHHHhhhhhcC----CCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCc
Q 000319 341 TALCDRLLDFDENVRKQVVAVICDVACHALN----SIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSI 416 (1674)
Q Consensus 341 ~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~----~V~~elL~~LaeR~RDKK~~VRkeAm~~La~LY~~~~~~~~~~~~ 416 (1674)
..|++||. .|--|+.||+|+|.++...++ .+-.+++..++.=+|--....|.+++..+-+|-..|...+.. ..
T Consensus 614 ~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~-~~ 690 (1233)
T KOG1824|consen 614 PILLERLG--NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPA-EL 690 (1233)
T ss_pred HHHHHHHh--chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH-HH
Confidence 88999995 578899999999999975543 344567778887777666678888777777777766321100 01
Q ss_pred cccccccchHHHhhhhccCCCCchhHHHHhhcCCc--CCCCCHHHHH---HHHHHHHh--cCCHHHHHHHHHHHHHHHHH
Q 000319 417 NQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLF--PTGFSVKDRV---RHWVRIFS--GFDRIEMKALEKILEQKQRL 489 (1674)
Q Consensus 417 ~~~~~~wIPskIL~~~Y~nD~~~~lVE~vL~e~Ll--P~~~~~~~R~---~~ll~l~~--~LD~~~~kal~~il~~k~~l 489 (1674)
...-+.-||+-|- ..|.+.-..--.+..+++ |...-.+-+- ..++.+.. .+-..+..++..++..-..-
T Consensus 691 ~e~vL~el~~Lis----esdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t 766 (1233)
T KOG1824|consen 691 LEAVLVELPPLIS----ESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVIT 766 (1233)
T ss_pred HHHHHHHhhhhhh----HHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhc
Confidence 1112333443332 223221111111111221 1110011111 11111111 11111122222221111110
Q ss_pred HHHHHHHHHHHhhhc--------CCCcHHHHHHHHHHHHHHHhhcCCchH--HHHHHHHHH--hhchH-HHHHHHHHH-h
Q 000319 490 QQEMQRYLSLRQMHQ--------DGDAPEIQKKILFCFRVMSRSFAEPAK--AEENFLILD--QLKDA-NVWKILMNL-L 555 (1674)
Q Consensus 490 ~~~~~~~l~l~~~~~--------~~d~~ei~~kL~~~I~~Ls~~fPDp~K--a~~~L~kf~--klnD~-Ri~kLLk~~-i 555 (1674)
+..-..|..+....+ ++-....--.|.+|+..|+..+|+-.+ |..-.+-|. +.+|. ++|-+|..= +
T Consensus 767 ~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGEl 846 (1233)
T KOG1824|consen 767 KEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGEL 846 (1233)
T ss_pred CCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhh
Confidence 111111222211111 111222333478888999999995444 333334443 33443 455444221 1
Q ss_pred c------CCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhccccC--hhHHHHHHHHHHhhcccchhhhHHHHHHH
Q 000319 556 D------SNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFN--KEHVKEILLEVAAQKSSANAQFMQSCMDI 627 (1674)
Q Consensus 556 d------~~td~~tv~~a~kELlkkL~~~~~l~e~l~~Ll~RsS~lifN--ks~V~~LL~~v~~~~~~~~~~~~~~a~eL 627 (1674)
+ |.-.|.+ -++.-++.+ ..|....-.|-...+-.+ ...+|.|+..+... .. .++ ---|.|
T Consensus 847 gr~~~~s~~~e~~~------~iieaf~sp--~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sq--pk-~Qy-LLLhSl 914 (1233)
T KOG1824|consen 847 GRRKDLSPQNELKD------TIIEAFNSP--SEDVKSAASYALGSLAVGNLPKYLPFILEQIESQ--PK-RQY-LLLHSL 914 (1233)
T ss_pred ccCCCCCcchhhHH------HHHHHcCCC--hHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcc--hH-hHH-HHHHHH
Confidence 1 1112211 122222222 234444434433334331 23567777766432 11 111 123567
Q ss_pred HHHHHhhCCcCccccHHHHHHHHhhccccchHHHHHHHHHhhcchhhhhhcccchHHHHHHHHhhcCChHH---HHHHHH
Q 000319 628 LGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQ---AKYAVH 704 (1674)
Q Consensus 628 L~~IS~~~P~lFk~~v~~Li~lL~~~~~~~~~~aLkiLak~~k~i~e~~~~~~s~l~~~L~~lal~Gtp~q---AKyAvr 704 (1674)
...|+...+..|+..++.+-.+|...-+..-+++=-+++.|-|.+- ....+++.+.|+.+-..|.|.. +=-||+
T Consensus 915 kevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~---l~epesLlpkL~~~~~S~a~~~rs~vvsavK 991 (1233)
T KOG1824|consen 915 KEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLV---LIEPESLLPKLKLLLRSEASNTRSSVVSAVK 991 (1233)
T ss_pred HHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHH---hCChHHHHHHHHHHhcCCCcchhhhhhheee
Confidence 7789999999999999999999988544444555555666644322 1234578999988877776532 222222
Q ss_pred HHHhhcCCCccchHHHHHHH-HHHh---hhhcC-CC-chHHHHHHHHHhhcccccccchHHHHHHHH
Q 000319 705 ALAAITKDDGLKSLSVLYKR-LVDM---LEEKT-HL-PAVLQSLGCIAQTAMPVFETRESEIEEFIK 765 (1674)
Q Consensus 705 ~Laa~~~~~~~~~~~~L~~~-L~~~---L~~~~-~l-~t~L~sL~~Iaq~ap~vfe~~~~eI~~fIi 765 (1674)
.. ++.... .+..++++ |-+- +.+.+ +. -..|++|-..+.+-|....+--.++...++
T Consensus 992 fs--isd~p~--~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly 1054 (1233)
T KOG1824|consen 992 FS--ISDQPQ--PIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLY 1054 (1233)
T ss_pred ee--ecCCCC--ccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHH
Confidence 21 222221 12222322 2121 22211 11 224667777777777666554445444443
No 21
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=96.93 E-value=0.0016 Score=58.29 Aligned_cols=44 Identities=20% Similarity=0.392 Sum_probs=40.1
Q ss_pred cccceEEEecCCCCceEEEEEEeecCCCCeeEEEccC-Ccceeeecc
Q 000319 1375 LIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDD-EDVEVLRLD 1420 (1674)
Q Consensus 1375 lvG~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdD-gd~E~l~L~ 1420 (1674)
-+|..|.+.| .|..||.|+|+.+++. +...|.|.| |..|++...
T Consensus 4 ~~G~~~~a~~-~d~~wyra~I~~~~~~-~~~~V~f~D~G~~~~v~~~ 48 (57)
T smart00333 4 KVGDKVAARW-EDGEWYRARIIKVDGE-QLYEVFFIDYGNEEVVPPS 48 (57)
T ss_pred CCCCEEEEEe-CCCCEEEEEEEEECCC-CEEEEEEECCCccEEEeHH
Confidence 4899999999 9999999999999988 889999988 999988754
No 22
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.85 E-value=2.8 Score=54.31 Aligned_cols=126 Identities=23% Similarity=0.317 Sum_probs=92.5
Q ss_pred cccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHh
Q 000319 266 ELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCD 345 (1674)
Q Consensus 266 EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~~~eIi~~L~~ 345 (1674)
-+.+.+-.+|-...+++..+....+.-=-.-|.-+-...+.|..|+.|.||++.|.+... +.-.|. ++.-.+...|..
T Consensus 93 g~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsr-lQ~d~~-dee~~v~n~l~~ 170 (892)
T KOG2025|consen 93 GTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSR-LQGDPK-DEECPVVNLLKD 170 (892)
T ss_pred cccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHH-HhcCCC-CCcccHHHHHHH
Confidence 345788999999999999988743211123444555688999999999999999999876 332333 233456666665
Q ss_pred hh-CCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 000319 346 RL-LDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLAD 402 (1674)
Q Consensus 346 rL-~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VRkeAm~~La~ 402 (1674)
-+ +||.+.||.+|.-.| .++..++-.+.+|+||=+..+|+-+-.++..
T Consensus 171 liqnDpS~EVRRaaLsnI---------~vdnsTlp~IveRarDV~~anRrlvY~r~lp 219 (892)
T KOG2025|consen 171 LIQNDPSDEVRRAALSNI---------SVDNSTLPCIVERARDVSGANRRLVYERCLP 219 (892)
T ss_pred HHhcCCcHHHHHHHHHhh---------ccCcccchhHHHHhhhhhHHHHHHHHHHhhh
Confidence 43 899999999977666 4566777788999999999999976555443
No 23
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=4.3 Score=55.47 Aligned_cols=226 Identities=15% Similarity=0.152 Sum_probs=127.6
Q ss_pred HHHHHHHhchhhhhcCCCcchHHHHHHHHHHHhhhcCCCCCCChhHHH-HHHHHhcCCCCCCCCChhhHHHHHHHHHhhh
Q 000319 52 MQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLK-LIVGTFSGLKDTGGPSFGRRVVILETLAKYR 130 (1674)
Q Consensus 52 l~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~APdAPytdd~lk-li~~~f~~L~d~~~p~f~q~~~lLesLA~vk 130 (1674)
+++++..|++.- .-.+.-|++.+--|+. ++|---+|+.+..+. .++..+..|.- +..--..-++.+.-+.+-.
T Consensus 222 i~sl~e~lL~i~--~~s~v~v~~~~~q~l~---~lf~~~~~~l~a~~~a~lL~al~~l~p-s~~D~~~t~~W~~v~~~~~ 295 (1176)
T KOG1248|consen 222 IKSLCEVLLNIT--TESPVLVLLEVLQCLH---SLFKKHPTALAAELNARLLTALMTLSP-SENDDLLTVAWLKVLNEAH 295 (1176)
T ss_pred HHHHHHHHHhhc--ccchHHHHHHHHHHHH---HHHhcCCCcchHHHHHHHHHHHHHhCC-CccchHHHHHHHHHHHHHH
Confidence 344454444332 2233334444444544 444333337666554 56666666653 2222355677777777777
Q ss_pred hhheeccCC-chHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCCCcHHHH----HHH
Q 000319 131 SCVVMLDLE-CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTAR----RLA 205 (1674)
Q Consensus 131 s~vlm~DL~-~~~Li~~lF~~ff~iv~~~~~~~V~~~m~~IL~~vI~Ese~vp~~lLd~IL~~l~~~~~~~a~----~lA 205 (1674)
.++-..|.+ |=.=+..+|..||.+- ....+.+.....+++..|+.++-.+-..+-...+..+..-+..++| ++-
T Consensus 296 ~~la~~q~~~~~~~~~~~~~~~~t~~-~s~~~e~~q~a~q~l~~il~~sv~~~~~~c~~~~~~~l~~kf~~~~~~ilqi~ 374 (1176)
T KOG1248|consen 296 DILATLQEEKALQALPRLFSLFFTIL-ESLIEELVQAASQSLKEILKESVTVIDALCSKQLHSLLDYKFHAVWRFILQIL 374 (1176)
T ss_pred HHHHHhCHHHHHHhhhhhhhHHHHHH-hcccHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 777667766 5555677888888854 3445577778899999999998876666666655555444444555 445
Q ss_pred HHHHHHhhhhhhHHHHHHHHHhhc-CCCCCCCCcchH-HHHHHHHHhhcchhhhhhhhcccccccCC-ChHHHHHHHHHH
Q 000319 206 MNVIEQCAGKLEAGIKQFLVSSMS-GDSRPGHSHIDY-HEVIYDVYRCSPQILSGVVPYLTGELLTD-QLDTRLKAVGLV 282 (1674)
Q Consensus 206 ~~v~~~~~dkL~~~I~q~f~~~l~-~d~~~~~~~~~~-h~Li~eL~~~~P~lL~~ViP~Le~EL~se-d~~~Rl~At~ll 282 (1674)
..+|++|...-.|++..-+-.+-. ..+........+ +-+.-.+-..=|+.+++++|.= |..+ ..-.|.=-.-+|
T Consensus 375 s~~fek~G~~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLn---l~~~s~~~~RsWLLPvL 451 (1176)
T KOG1248|consen 375 SALFEKCGELSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTILPLN---LHAESLSFTRSWLLPVL 451 (1176)
T ss_pred HHHHHHhhhhcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcchh---ccccccccchhHhHHHH
Confidence 555666666555555444433321 111111122234 3455667777999999999972 2322 233444444444
Q ss_pred HHhhc
Q 000319 283 GDLFA 287 (1674)
Q Consensus 283 G~mfs 287 (1674)
-+-+-
T Consensus 452 R~~i~ 456 (1176)
T KOG1248|consen 452 RDYII 456 (1176)
T ss_pred HHhhc
Confidence 44443
No 24
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=96.65 E-value=0.0034 Score=54.15 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=38.6
Q ss_pred cceEEEecCCCCceEEEEEEeecCCCCeeEEEccC-Ccceeeecc
Q 000319 1377 GYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDD-EDVEVLRLD 1420 (1674)
Q Consensus 1377 G~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdD-gd~E~l~L~ 1420 (1674)
|..|-+.|+.|..||.|+|...++ .+.-.|.|.| |..|.+.+.
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~-~~~~~V~f~DyG~~~~v~~~ 44 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILS-DGKVEVFFVDYGNTEVVPLS 44 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECC-CCcEEEEEEcCCCcEEEeHH
Confidence 678999999999999999999998 7788899977 999998764
No 25
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=96.65 E-value=0.0032 Score=57.37 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=33.6
Q ss_pred cccceEEEecCCCCceEEEEEEeecCCCCeeEEEccC
Q 000319 1375 LIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDD 1411 (1674)
Q Consensus 1375 lvG~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdD 1411 (1674)
-+|..|.+||+.+..||.|+|+.+++ .+++.|.|++
T Consensus 4 ~~G~~Ve~~~~~~~~W~~a~V~~~~~-~~~~~V~~~~ 39 (61)
T smart00743 4 KKGDRVEVFSKEEDSWWEAVVTKVLG-DGKYLVRYLT 39 (61)
T ss_pred CCCCEEEEEECCCCEEEEEEEEEECC-CCEEEEEECC
Confidence 48999999999999999999999998 6789999987
No 26
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.65 E-value=0.011 Score=56.75 Aligned_cols=83 Identities=23% Similarity=0.304 Sum_probs=66.6
Q ss_pred HHhhh-cCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHH
Q 000319 304 FLKRL-TDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVA 382 (1674)
Q Consensus 304 fL~R~-~D~s~~VR~~~ve~~~~iL~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~La 382 (1674)
++... +|.++.||...+..++.+ ...++++.|...+.|+|..||.+|+.+++.+. +.+.+..|.
T Consensus 4 L~~~l~~~~~~~vr~~a~~~L~~~--------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-------~~~~~~~L~ 68 (88)
T PF13646_consen 4 LLQLLQNDPDPQVRAEAARALGEL--------GDPEAIPALIELLKDEDPMVRRAAARALGRIG-------DPEAIPALI 68 (88)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHCC--------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-------HHHTHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHc--------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------CHHHHHHHH
Confidence 44555 799999999998888731 23588999999999999999999999998764 345677778
Q ss_pred Hhhcc-CChhHHHHHHHHHH
Q 000319 383 ERLRD-KSVLVKRYTMERLA 401 (1674)
Q Consensus 383 eR~RD-KK~~VRkeAm~~La 401 (1674)
+.+.| ....||..|+..||
T Consensus 69 ~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 69 KLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTC-SSHHHHHHHHHHHH
T ss_pred HHHcCCCcHHHHHHHHhhcC
Confidence 87877 45678999999986
No 27
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.60 E-value=1.6 Score=56.91 Aligned_cols=161 Identities=14% Similarity=0.048 Sum_probs=117.6
Q ss_pred HHHHHHHHHhhcchhhhhhhhcccccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHH
Q 000319 241 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVL 320 (1674)
Q Consensus 241 ~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v 320 (1674)
.|--+.+-.+-.|++-+--|-.+.--|...|..+|--|.+++..|= +..--|-...+--+-..|.+|-||-...
T Consensus 91 VyvYLlrYAEeqpdLALLSIntfQk~L~DpN~LiRasALRvlSsIR------vp~IaPI~llAIk~~~~D~s~yVRk~AA 164 (968)
T KOG1060|consen 91 VYVYLLRYAEEQPDLALLSINTFQKALKDPNQLIRASALRVLSSIR------VPMIAPIMLLAIKKAVTDPSPYVRKTAA 164 (968)
T ss_pred HHHHHHHHhhcCCCceeeeHHHHHhhhcCCcHHHHHHHHHHHHhcc------hhhHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 4555555566789988888889999999999999999999987542 3344466777777889999999999999
Q ss_pred HHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHH
Q 000319 321 EHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERL 400 (1674)
Q Consensus 321 e~~~~iL~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VRkeAm~~L 400 (1674)
-+++.+..-.|+. -.+|++.+...|.|.+..|=-+||.++-++....++.|-.. .+.+..-+.|=.-==....|..|
T Consensus 165 ~AIpKLYsLd~e~--k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHkn-yrklC~ll~dvdeWgQvvlI~mL 241 (968)
T KOG1060|consen 165 HAIPKLYSLDPEQ--KDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKN-YRKLCRLLPDVDEWGQVVLINML 241 (968)
T ss_pred HhhHHHhcCChhh--HHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHH-HHHHHhhccchhhhhHHHHHHHH
Confidence 9999988777753 34899999999999999999999999988877777665443 22222333332211123456666
Q ss_pred HHHHHHHhhh
Q 000319 401 ADIFRGCCLR 410 (1674)
Q Consensus 401 a~LY~~~~~~ 410 (1674)
.+.-+.+..+
T Consensus 242 ~RYAR~~l~~ 251 (968)
T KOG1060|consen 242 TRYARHQLPD 251 (968)
T ss_pred HHHHHhcCCC
Confidence 6655555443
No 28
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=4.2 Score=51.71 Aligned_cols=408 Identities=14% Similarity=0.145 Sum_probs=221.0
Q ss_pred HHHHHHHHHh-hhhhhHHHHHHHHHhhcCCCC-CCCCcc-----hHHHHHHHHHhhcchhhhhhhhcccccccCCChHHH
Q 000319 203 RLAMNVIEQC-AGKLEAGIKQFLVSSMSGDSR-PGHSHI-----DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTR 275 (1674)
Q Consensus 203 ~lA~~v~~~~-~dkL~~~I~q~f~~~l~~d~~-~~~~~~-----~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~R 275 (1674)
++.+++++.+ .++|...|.+...+.++.... ..+.++ -++-|=.+--.+.-.++.+|++. +...|..+|
T Consensus 26 k~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~c----f~D~d~~vR 101 (675)
T KOG0212|consen 26 KLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNC----FSDQDSQVR 101 (675)
T ss_pred HHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHh----ccCccceee
Confidence 3444444333 367777777777776653321 111111 12222222222334445555555 445788999
Q ss_pred HHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHH---HHHhHHHHhcCCCCCChHHHHHHHHhhhCCChh
Q 000319 276 LKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSV---LEHVKSCLLTDPSRADAPQILTALCDRLLDFDE 352 (1674)
Q Consensus 276 l~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~---ve~~~~iL~s~p~~~~~~eIi~~L~~rL~D~DE 352 (1674)
--|.+.+-.+-..-..++..-++.+|....+=+.|.+..||-.. -..+++|.......-..++++.-|.+|+.+.+.
T Consensus 102 yyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~ 181 (675)
T KOG0212|consen 102 YYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINP 181 (675)
T ss_pred eHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCc
Confidence 99999887776554457788889999999999999999999652 233445554443233357899999999999999
Q ss_pred HHHHHHHHHHHHhhhhh----cCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccC-C-----Ccc-----
Q 000319 353 NVRKQVVAVICDVACHA----LNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFN-G-----SIN----- 417 (1674)
Q Consensus 353 kVR~aaV~ai~~la~~~----l~~V~~elL~~LaeR~RDKK~~VRkeAm~~La~LY~~~~~~~~~-~-----~~~----- 417 (1674)
.+|..+|.-+.-+.... +.++ .+++.-|..=+-|-...||..|=..|+.+-+....+.+. + +..
T Consensus 182 ~tR~flv~Wl~~Lds~P~~~m~~yl-~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ 260 (675)
T KOG0212|consen 182 MTRQFLVSWLYVLDSVPDLEMISYL-PSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQ 260 (675)
T ss_pred hHHHHHHHHHHHHhcCCcHHHHhcc-hHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhcccccc
Confidence 99999999886654311 1122 245555666678999999999999999998876543221 0 000
Q ss_pred -------ccccccchHHHhhhhccCCCCch-hHHHHhhcCCcCCCCCHHHH----HHHHHH--HHhcCCHHHHH---HHH
Q 000319 418 -------QNEFEWIPGKILRCLYDKDFGSD-TIESVLCGSLFPTGFSVKDR----VRHWVR--IFSGFDRIEMK---ALE 480 (1674)
Q Consensus 418 -------~~~~~wIPskIL~~~Y~nD~~~~-lVE~vL~e~LlP~~~~~~~R----~~~ll~--l~~~LD~~~~k---al~ 480 (1674)
...+-||-.- .++.....- ..-. +++.++|.-.+.+.. ....++ +.+-++....+ .+.
T Consensus 261 ss~~~iq~~al~Wi~ef----V~i~g~~~l~~~s~-il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~ 335 (675)
T KOG0212|consen 261 SSEPEIQLKALTWIQEF----VKIPGRDLLLYLSG-ILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYG 335 (675)
T ss_pred CCcHHHHHHHHHHHHHH----hcCCCcchhhhhhh-hhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchH
Confidence 0113344111 112111111 1222 245678875444332 222221 11111221111 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHH---hhcCCchHH--HHHHHHH-HhhchH------HHH
Q 000319 481 KILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMS---RSFAEPAKA--EENFLIL-DQLKDA------NVW 548 (1674)
Q Consensus 481 ~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kL~~~I~~Ls---~~fPDp~Ka--~~~L~kf-~klnD~------Ri~ 548 (1674)
.| -..+++|+.- +. +.+++. +.+||. ..+|...-. ..-+..+ ..+-|+ +..
T Consensus 336 ~i-------i~vl~~~l~~-------~~--~~tri~-~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L 398 (675)
T KOG0212|consen 336 SI-------IEVLTKYLSD-------DR--EETRIA-VLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLAL 398 (675)
T ss_pred HH-------HHHHHHHhhc-------ch--HHHHHH-HHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHH
Confidence 11 2233344431 21 222332 345553 444443321 1111111 122221 122
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhccccChhHHHHHHHHHHhhcccchhhhHHHHHHHH
Q 000319 549 KILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDIL 628 (1674)
Q Consensus 549 kLLk~~id~~td~~tv~~a~kELlkkL~~~~~l~e~l~~Ll~RsS~lifNks~V~~LL~~v~~~~~~~~~~~~~~a~eLL 628 (1674)
.++..++....++ ..++....|+.+..+...+.+.--.|..|.-++..|.++|=.-+..+-.. ..+-.++...-+.|
T Consensus 399 ~lla~i~~s~~~~-~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~ILe~--e~nl~FAstMV~~L 475 (675)
T KOG0212|consen 399 SLLASICSSSNSP-NLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADILER--EENLKFASTMVQAL 475 (675)
T ss_pred HHHHHHhcCcccc-cHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHHhc--cccchHHHHHHHHH
Confidence 2333333332222 22344455555555554455556668889999999999997666544332 33445667777999
Q ss_pred HHHHhhCCcCcc
Q 000319 629 GILARFSPLLLG 640 (1674)
Q Consensus 629 ~~IS~~~P~lFk 640 (1674)
+.|--+.|++|.
T Consensus 476 n~iLlTStELf~ 487 (675)
T KOG0212|consen 476 NTILLTSTELFQ 487 (675)
T ss_pred HhhhcccHHHHH
Confidence 999999999993
No 29
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.48 E-value=0.94 Score=57.94 Aligned_cols=231 Identities=16% Similarity=0.177 Sum_probs=147.1
Q ss_pred HHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCC---
Q 000319 298 HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIP--- 374 (1674)
Q Consensus 298 ~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~--- 374 (1674)
.+++-.-|..|.|+...||-+...++..|+..-+.. -...++..+..-+.+.-++=-.++|+.++-++......++
T Consensus 215 v~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~-aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~l 293 (569)
T KOG1242|consen 215 VPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAY-AVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCL 293 (569)
T ss_pred HhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcc-hhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHH
Confidence 566666777889999999999998888766553322 2356777777777777777778888888877765554443
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCccccccccchHHHhhhhccCCCC-chhHHHHhhcCCcCC
Q 000319 375 VETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFG-SDTIESVLCGSLFPT 453 (1674)
Q Consensus 375 ~elL~~LaeR~RDKK~~VRkeAm~~La~LY~~~~~~~~~~~~~~~~~~wIPskIL~~~Y~nD~~-~~lVE~vL~e~LlP~ 453 (1674)
.+++..+.+.|-|-|+.||+.++++|-++=... ++ ..+.-|=.++++|+-++.-+ ...++.+...
T Consensus 294 p~iiP~lsevl~DT~~evr~a~~~~l~~~~svi-----dN----~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~t----- 359 (569)
T KOG1242|consen 294 PDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI-----DN----PDIQKIIPTLLDALADPSCYTPECLDSLGAT----- 359 (569)
T ss_pred hHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh-----cc----HHHHHHHHHHHHHhcCcccchHHHHHhhcce-----
Confidence 356788999999999999999999998876543 11 11334455677776443311 2344444333
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCchHHH
Q 000319 454 GFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAE 533 (1674)
Q Consensus 454 ~~~~~~R~~~ll~l~~~LD~~~~kal~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kL~~~I~~Ls~~fPDp~Ka~ 533 (1674)
++....|+.+..-+--|+.+.-. - .+..+.++...+|..|++..+||....
T Consensus 360 ------------tFV~~V~~psLalmvpiL~R~l~----------e-------Rst~~kr~t~~IidNm~~LveDp~~la 410 (569)
T KOG1242|consen 360 ------------TFVAEVDAPSLALMVPILKRGLA----------E-------RSTSIKRKTAIIIDNMCKLVEDPKDLA 410 (569)
T ss_pred ------------eeeeeecchhHHHHHHHHHHHHh----------h-------ccchhhhhHHHHHHHHHHhhcCHHHHh
Confidence 23345555544333334332111 0 122345566667888888888988877
Q ss_pred HHHHHHHhhchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 000319 534 ENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAK 578 (1674)
Q Consensus 534 ~~L~kf~klnD~Ri~kLLk~~id~~td~~tv~~a~kELlkkL~~~ 578 (1674)
..|-.+. +.+...+.+. .|++.+ .+.++.-.+++++|..
T Consensus 411 pfl~~Ll----p~lk~~~~d~-~PEvR~-vaarAL~~l~e~~g~~ 449 (569)
T KOG1242|consen 411 PFLPSLL----PGLKENLDDA-VPEVRA-VAARALGALLERLGEV 449 (569)
T ss_pred hhHHHHh----hHHHHHhcCC-ChhHHH-HHHHHHHHHHHHHHhh
Confidence 7776654 2344444444 566655 3345677788888754
No 30
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=96.47 E-value=5.1 Score=58.62 Aligned_cols=373 Identities=16% Similarity=0.122 Sum_probs=180.1
Q ss_pred CChhHHHHHHHHhHHHHhcCCCCC---ChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcC----CCCHHHHHHHHH
Q 000319 311 RIVAVRMSVLEHVKSCLLTDPSRA---DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN----SIPVETVKLVAE 383 (1674)
Q Consensus 311 ~s~~VR~~~ve~~~~iL~s~p~~~---~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~----~V~~elL~~Lae 383 (1674)
.+.+++...+.+...+...+.+.- .....++.|...|...++.+|..++.+++-++..+-. .+....+-.|.+
T Consensus 416 ~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~ 495 (2102)
T PLN03200 416 ATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQ 495 (2102)
T ss_pred CCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH
Confidence 447899999888877554332210 0012457888889889999999999999888753321 123345667788
Q ss_pred hhccCChhHHHHHHHHHHHHHHHHhhhccCCCccccccccchHHHhhhhccCCCCchhHHHHhhcCCcCCCCCHHHHHHH
Q 000319 384 RLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRH 463 (1674)
Q Consensus 384 R~RDKK~~VRkeAm~~La~LY~~~~~~~~~~~~~~~~~~wIPskIL~~~Y~nD~~~~lVE~vL~e~LlP~~~~~~~R~~~ 463 (1674)
.++..+..+|++|+..|++|=... .+.......-+-||. |++++-..+.+. .+ .=+..
T Consensus 496 LL~s~~~~iqeeAawAL~NLa~~~----~qir~iV~~aGAIpp-LV~LL~sgd~~~--q~---------------~Aa~A 553 (2102)
T PLN03200 496 LLETGSQKAKEDSATVLWNLCCHS----EDIRACVESAGAVPA-LLWLLKNGGPKG--QE---------------IAAKT 553 (2102)
T ss_pred HHcCCCHHHHHHHHHHHHHHhCCc----HHHHHHHHHCCCHHH-HHHHHhCCCHHH--HH---------------HHHHH
Confidence 888889999999999998874310 000011122355564 555542222210 00 00112
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhc
Q 000319 464 WVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLK 543 (1674)
Q Consensus 464 ll~l~~~LD~~~~kal~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kL~~~I~~Ls~~fPDp~Ka~~~L~kf~kln 543 (1674)
+.++..+-|.... ..++++.. .+.+.++.....++..|...-....-.... .-
T Consensus 554 L~nLi~~~d~~~I-----------------~~Lv~LLl----sdd~~~~~~aL~vLgnIlsl~~~~d~~~~g------~~ 606 (2102)
T PLN03200 554 LTKLVRTADAATI-----------------SQLTALLL----GDLPESKVHVLDVLGHVLSVASLEDLVREG------SA 606 (2102)
T ss_pred HHHHHhccchhHH-----------------HHHHHHhc----CCChhHHHHHHHHHHHHHhhcchhHHHHHh------hh
Confidence 2222222222211 11222210 122222222211222221111000000000 00
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-cCCCchHHHHHHHHHhhhccccChhHHHHHHHHHHhhcccchhhhHH
Q 000319 544 DANVWKILMNLLDSNTSFDQAFTGRDDLLKIL-GAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQ 622 (1674)
Q Consensus 544 D~Ri~kLLk~~id~~td~~tv~~a~kELlkkL-~~~~~l~e~l~~Ll~RsS~lifNks~V~~LL~~v~~~~~~~~~~~~~ 622 (1674)
+......|-.++...++ ..-..|. .++-.+ .... +.. ..++....|+-|+..+..... .....
T Consensus 607 ~~ggL~~Lv~LL~sgs~-~ikk~Aa-~iLsnL~a~~~---d~~--------~avv~agaIpPLV~LLss~~~---~v~ke 670 (2102)
T PLN03200 607 ANDALRTLIQLLSSSKE-ETQEKAA-SVLADIFSSRQ---DLC--------ESLATDEIINPCIKLLTNNTE---AVATQ 670 (2102)
T ss_pred ccccHHHHHHHHcCCCH-HHHHHHH-HHHHHHhcCCh---HHH--------HHHHHcCCHHHHHHHHhcCCh---HHHHH
Confidence 00111111111111110 0000111 111111 1111 000 113444567777776643211 11223
Q ss_pred HHHHHHHHHHhhCCc--Cc---cccHHHHHHHHhhccccchHHHHHHHHHhhcchhhhhhcccchHHHHHHHHhhcCChH
Q 000319 623 SCMDILGILARFSPL--LL---GGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRR 697 (1674)
Q Consensus 623 ~a~eLL~~IS~~~P~--lF---k~~v~~Li~lL~~~~~~~~~~aLkiLak~~k~i~e~~~~~~s~l~~~L~~lal~Gtp~ 697 (1674)
.|..|....+...+. ++ .+.+..||++|...+..+++.++.+|+.+...-............+.|.++-.+|+++
T Consensus 671 AA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~ 750 (2102)
T PLN03200 671 SARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLE 750 (2102)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChH
Confidence 444444444333322 12 3457899999999887788999999998765321111112345688899999999999
Q ss_pred HHHHHHHHHHhhcCCCccch-H------HHHHHHHHHhhhhcC--CCch--HHHHHHHHHhh
Q 000319 698 QAKYAVHALAAITKDDGLKS-L------SVLYKRLVDMLEEKT--HLPA--VLQSLGCIAQT 748 (1674)
Q Consensus 698 qAKyAvr~Laa~~~~~~~~~-~------~~L~~~L~~~L~~~~--~l~t--~L~sL~~Iaq~ 748 (1674)
.=++|+.+|..++....... + .-.+..|++.|...+ +..+ .|..|+-+++.
T Consensus 751 ~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~ 812 (2102)
T PLN03200 751 GKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLART 812 (2102)
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhh
Confidence 99999999987775532111 1 112355666665222 3333 56666666664
No 31
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.44 E-value=0.015 Score=79.40 Aligned_cols=120 Identities=23% Similarity=0.201 Sum_probs=89.3
Q ss_pred hhhcccccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHH
Q 000319 259 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQ 338 (1674)
Q Consensus 259 ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~~~e 338 (1674)
.++.|-..|..+++.+|..|++.||+.-. +.+...+...+.|.++.||...+..+..+....+.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~------ 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP------ 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc------
Confidence 55666677778999999999999998631 23455556666899999999999998776443221
Q ss_pred HHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000319 339 ILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 403 (1674)
Q Consensus 339 Ii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VRkeAm~~La~L 403 (1674)
...|...|.|+|+.||.+|+.++..+.... . ..+...+.|+.+.||..|+..|+.+
T Consensus 686 -~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~-----~---~~l~~~L~D~d~~VR~~Av~aL~~~ 741 (897)
T PRK13800 686 -APALRDHLGSPDPVVRAAALDVLRALRAGD-----A---ALFAAALGDPDHRVRIEAVRALVSV 741 (897)
T ss_pred -hHHHHHHhcCCCHHHHHHHHHHHHhhccCC-----H---HHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 235666778899999999999887754211 1 2346688999999999999999874
No 32
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.26 E-value=1.9 Score=55.52 Aligned_cols=141 Identities=19% Similarity=0.181 Sum_probs=92.9
Q ss_pred hhhcccccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCC-ChhHHHHHHHHhHHHHhcCCCCCCh-
Q 000319 259 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDR-IVAVRMSVLEHVKSCLLTDPSRADA- 336 (1674)
Q Consensus 259 ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~-s~~VR~~~ve~~~~iL~s~p~~~~~- 336 (1674)
++|.|-.-|..+|..+-..|.++|.+|.+.+. .+..-+++....-|...... +..||+-+.+.+..|...++.....
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~-~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~ 198 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHPE-GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAV 198 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCch-hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 45556666788999999999999999998653 33333222234445555555 7789999999998887666542111
Q ss_pred --HHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh--cCCC-CHHHHHHHHHhhccCChhHHHHHHHHH
Q 000319 337 --PQILTALCDRLLDFDENVRKQVVAVICDVACHA--LNSI-PVETVKLVAERLRDKSVLVKRYTMERL 400 (1674)
Q Consensus 337 --~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~--l~~V-~~elL~~LaeR~RDKK~~VRkeAm~~L 400 (1674)
+.+++.+...|.+.|--||+.++..+.++|... ...+ ...++..+...+.+-+..-|-.+|-..
T Consensus 199 ~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~ 267 (503)
T PF10508_consen 199 VNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLP 267 (503)
T ss_pred HhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhh
Confidence 137788888899999999999999999998722 2221 223555555555554433333333333
No 33
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.24 E-value=0.36 Score=61.99 Aligned_cols=242 Identities=19% Similarity=0.276 Sum_probs=155.0
Q ss_pred hhhHHHHHHHHHHHHhccccc-----ccHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhhhhhhHHHH--------HHHHH
Q 000319 160 PESVLSSMQTIMIVLLEESED-----IQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIK--------QFLVS 226 (1674)
Q Consensus 160 ~~~V~~~m~~IL~~vI~Ese~-----vp~~lLd~IL~~l~~~~~~~a~~lA~~v~~~~~dkL~~~I~--------q~f~~ 226 (1674)
...|....+..+..++.+.+. +..+++..|+..+..... ...+.|..++...+.. ...+. .-+.+
T Consensus 90 ~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~-~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~ 167 (503)
T PF10508_consen 90 SPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDL-SVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKS 167 (503)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcH-HHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHH
Confidence 346777777777777777655 566777777777754332 3333444444443321 12222 22333
Q ss_pred hhcCCCCCCCCcchHHHHHHHHHhhcchhhhh-----hhhcccccccCCChHHHHHHHHHHHHhhcCC-CCCchhhcHHH
Q 000319 227 SMSGDSRPGHSHIDYHEVIYDVYRCSPQILSG-----VVPYLTGELLTDQLDTRLKAVGLVGDLFAVP-GSANNEQFHSV 300 (1674)
Q Consensus 227 ~l~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~-----ViP~Le~EL~sed~~~Rl~At~llG~mfs~~-~~~~a~~y~~~ 300 (1674)
++... ......++++++.+|.+.+|+.+.. +++.+..+|..+|+-+|+.|+++|++|-..+ |..+..+ ..+
T Consensus 168 l~~~~--~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~-~gi 244 (503)
T PF10508_consen 168 LMSQS--SDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQ-QGI 244 (503)
T ss_pred HHhcc--CHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHh-CCH
Confidence 33221 1112357999999999999988765 5689999999999999999999999998855 3333332 234
Q ss_pred HHHHHhhhc----CC-ChhHHHH-HHHHhHHHHhcCCCC--CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh---
Q 000319 301 FSEFLKRLT----DR-IVAVRMS-VLEHVKSCLLTDPSR--ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA--- 369 (1674)
Q Consensus 301 w~~fL~R~~----D~-s~~VR~~-~ve~~~~iL~s~p~~--~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~--- 369 (1674)
+........ |. ...+.+- .+++.+.+....|.. ...+.++..|...+...|...|..|+.+++.++.+.
T Consensus 245 ~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~ 324 (503)
T PF10508_consen 245 FDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGK 324 (503)
T ss_pred HHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHH
Confidence 444444433 32 2222221 235555544444421 122455666666677899999999999999987522
Q ss_pred --c-CCCCH---HHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000319 370 --L-NSIPV---ETVKLVAERLRDKSVLVKRYTMERLADIFRG 406 (1674)
Q Consensus 370 --l-~~V~~---elL~~LaeR~RDKK~~VRkeAm~~La~LY~~ 406 (1674)
+ ..-+. .+++.++.+++.=+..+|..|+..|+.++..
T Consensus 325 ~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~ 367 (503)
T PF10508_consen 325 QLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTS 367 (503)
T ss_pred HHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Confidence 3 11122 3688999999999999999999999999963
No 34
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.98 E-value=1.8 Score=55.53 Aligned_cols=369 Identities=17% Similarity=0.193 Sum_probs=203.5
Q ss_pred HHHHHHHHHhhcchhhhhhhhcccccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHH--
Q 000319 241 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMS-- 318 (1674)
Q Consensus 241 ~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~-- 318 (1674)
+.+++-.+|+- ++|--++|.|.+-|.+++=-+|-.++=.||-|--+=-.-|..--|.+.--++.-..|+.|-||..
T Consensus 378 aLDVLanvf~~--elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITC 455 (885)
T KOG2023|consen 378 ALDVLANVFGD--ELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITC 455 (885)
T ss_pred HHHHHHHhhHH--HHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeee
Confidence 45666666653 67778899999999999999999999999977654211244445888888899999999999975
Q ss_pred H--HHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh-cCCCCH--HHHHHH---HHhhccCCh
Q 000319 319 V--LEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-LNSIPV--ETVKLV---AERLRDKSV 390 (1674)
Q Consensus 319 ~--ve~~~~iL~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~-l~~V~~--elL~~L---aeR~RDKK~ 390 (1674)
| -.+++.++.-+++ .--.-++.+|..|++|..-+|.-|||.++..+...+ -..||. .+|.++ ...-.-|+.
T Consensus 456 WTLsRys~wv~~~~~~-~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNL 534 (885)
T KOG2023|consen 456 WTLSRYSKWVVQDSRD-EYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNL 534 (885)
T ss_pred eeHhhhhhhHhcCChH-hhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcce
Confidence 3 3455555554432 223467889999999999999999999998876544 344553 122222 233344566
Q ss_pred hHHHHHHHHHHHHHHHHhhhccCCCccccccccchHHHhh--hhccCCCCc-------hhHHHHhhcCCcCCCCCHHHHH
Q 000319 391 LVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILR--CLYDKDFGS-------DTIESVLCGSLFPTGFSVKDRV 461 (1674)
Q Consensus 391 ~VRkeAm~~La~LY~~~~~~~~~~~~~~~~~~wIPskIL~--~~Y~nD~~~-------~lVE~vL~e~LlP~~~~~~~R~ 461 (1674)
.|==.||-+||.--..+..+..- .+. -||--|=. ..-+.|.+. ..|-..|-..++|+--++=+|.
T Consensus 535 lILYDAIgtlAdsvg~~Ln~~~Y----iqi--LmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc 608 (885)
T KOG2023|consen 535 LILYDAIGTLADSVGHALNKPAY----IQI--LMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRC 608 (885)
T ss_pred ehHHHHHHHHHHHHHHhcCcHHH----HHH--hccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHH
Confidence 66667888887766555422110 000 11221111 111223221 1466667778888887777776
Q ss_pred HHHHHHH------hcCCHH--------HHHHHHHHHHHHHHHHHHHHHHH------HHH-hhhcCCCcHHHHHHHHHHHH
Q 000319 462 RHWVRIF------SGFDRI--------EMKALEKILEQKQRLQQEMQRYL------SLR-QMHQDGDAPEIQKKILFCFR 520 (1674)
Q Consensus 462 ~~ll~l~------~~LD~~--------~~kal~~il~~k~~l~~~~~~~l------~l~-~~~~~~d~~ei~~kL~~~I~ 520 (1674)
-++++=+ ..-|+. -+-+|.-+-+.-+.+-..+..++ ++. +..+ ...|++..---..+-
T Consensus 609 ~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~-D~~peVRQS~FALLG 687 (885)
T KOG2023|consen 609 FRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQ-DEVPEVRQSAFALLG 687 (885)
T ss_pred HHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhc-cCChHHHHHHHHHHH
Confidence 6666411 011110 00111112222222222222221 111 1122 245666543222222
Q ss_pred HHHhhcCCchHHHHHHHHHHhhchHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhccccC
Q 000319 521 VMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSN--TSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFN 598 (1674)
Q Consensus 521 ~Ls~~fPDp~Ka~~~L~kf~klnD~Ri~kLLk~~id~~--td~~tv~~a~kELlkkL~~~~~l~e~l~~Ll~RsS~lifN 598 (1674)
-|++++++..+. ++ ..++.+|-.-.+++ +-+..+.-|.-|+--+++.+. ..+++.++++.-. ++|
T Consensus 688 Dltk~c~~~v~p--~~--------~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~--~~~v~~vl~~L~~-iin 754 (885)
T KOG2023|consen 688 DLTKACFEHVIP--NL--------ADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKM--KQYVSPVLEDLIT-IIN 754 (885)
T ss_pred HHHHHHHHhccc--hH--------HHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhh--hhHHHHHHHHHHH-Hhc
Confidence 333443332221 11 22334444444453 344566667788888887663 3566666665543 334
Q ss_pred hhHHH-HHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccHHHHH
Q 000319 599 KEHVK-EILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELV 647 (1674)
Q Consensus 599 ks~V~-~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v~~Li 647 (1674)
+.+.+ +|++.. | --+-.+..++|+++..|.+..+
T Consensus 755 ~~~~~~tllENt--------------A-ITIGrLg~~~Pe~vAp~l~~f~ 789 (885)
T KOG2023|consen 755 RQNTPKTLLENT--------------A-ITIGRLGYICPEEVAPHLDSFM 789 (885)
T ss_pred ccCchHHHHHhh--------------h-hhhhhhhccCHHhcchhHHHHH
Confidence 44433 333311 1 1123367799999999876544
No 35
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.96 E-value=0.43 Score=56.34 Aligned_cols=230 Identities=13% Similarity=0.215 Sum_probs=152.0
Q ss_pred hhhcCCCcchHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHh-cCCCCCCCCChhhHHHHHHHHHhhhhhheeccCCch
Q 000319 63 VLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKLIVGTF-SGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECD 141 (1674)
Q Consensus 63 ~LL~HkD~~Vr~~vAcCLadIlRI~APdAPytdd~lkli~~~f-~~L~d~~~p~f~q~~~lLesLA~vks~vlm~DL~~~ 141 (1674)
..|.+.|..+|+-.--||++++-=..|+ ..+..+..++++.| ..|.| +..+...|.-....+-|-.++.
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~-~L~~~ev~~L~~F~~~rl~D--------~~~~~~~l~gl~~L~~~~~~~~- 75 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPD-FLSRQEVQVLLDFFCSRLDD--------HACVQPALKGLLALVKMKNFSP- 75 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHh-hccHHHHHHHHHHHHHHhcc--------HhhHHHHHHHHHHHHhCcCCCh-
Confidence 4678899999999999999999776444 37777778888887 57766 2334344444444444444432
Q ss_pred HHHHHHHHHHHHhhc-CCChhhHHHHHHHHHHHHhccc----ccccHHHHHHHHHhhcCCCcH----HHHHHHHHHHHHh
Q 000319 142 ELVNEMYSTFFAVAS-DDHPESVLSSMQTIMIVLLEES----EDIQEDLLVILLSALGRNKND----TARRLAMNVIEQC 212 (1674)
Q Consensus 142 ~Li~~lF~~ff~iv~-~~~~~~V~~~m~~IL~~vI~Es----e~vp~~lLd~IL~~l~~~~~~----~a~~lA~~v~~~~ 212 (1674)
+....+.+.+|+-+. ..++...+...-.||..+++.. ..+..+.+.-++..+..++-. -+++|...|+..-
T Consensus 76 ~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~ 155 (262)
T PF14500_consen 76 ESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEF 155 (262)
T ss_pred hhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence 235555555554333 3466677777777777766653 446778888888777554433 7889999888776
Q ss_pred hhhhhHHHHHHHHHhhc------CCCCCCCCcchHHHHHHHHHhh---cchhhhhhhhcccccccCCChHHHHHHHHHHH
Q 000319 213 AGKLEAGIKQFLVSSMS------GDSRPGHSHIDYHEVIYDVYRC---SPQILSGVVPYLTGELLTDQLDTRLKAVGLVG 283 (1674)
Q Consensus 213 ~dkL~~~I~q~f~~~l~------~d~~~~~~~~~~h~Li~eL~~~---~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG 283 (1674)
. +.+.+..+|--+.- ..+......+..-+|-..|..| .|..-.-++|.|-+.|.++...++..+.++|.
T Consensus 156 ~--~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~ 233 (262)
T PF14500_consen 156 D--ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLK 233 (262)
T ss_pred c--cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 6 47777777743321 1110011244455555555555 67777789999999999999999999999999
Q ss_pred HhhcCCCCC-chhhcHHHHHHH
Q 000319 284 DLFAVPGSA-NNEQFHSVFSEF 304 (1674)
Q Consensus 284 ~mfs~~~~~-~a~~y~~~w~~f 304 (1674)
.++..-|.. +..-..++|++.
T Consensus 234 ~c~~~y~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 234 ACIENYGADSLSPHWSTIWNAL 255 (262)
T ss_pred HHHHHCCHHHHHHHHHHHHHHH
Confidence 999876643 344457778754
No 36
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.78 E-value=0.085 Score=60.08 Aligned_cols=144 Identities=18% Similarity=0.159 Sum_probs=104.4
Q ss_pred hcccccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHH-
Q 000319 261 PYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQI- 339 (1674)
Q Consensus 261 P~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~~~eI- 339 (1674)
+.|...+.+..-.+-..|..+++.|+..-+..|......+....|++..|....||.....+...|+.+-+.. ..+
T Consensus 56 ~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~---~~~~ 132 (228)
T PF12348_consen 56 DAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYS---PKIL 132 (228)
T ss_dssp HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH---HHHH
Confidence 4445555566677888899999999987666676667888889999999999999999999998887765411 245
Q ss_pred HHHHHhhhCCChhHHHHHHHHHHHHhhhhhc---CCCC-----HHHHHHHHHhhccCChhHHHHHHHHHHHHHHHH
Q 000319 340 LTALCDRLLDFDENVRKQVVAVICDVACHAL---NSIP-----VETVKLVAERLRDKSVLVKRYTMERLADIFRGC 407 (1674)
Q Consensus 340 i~~L~~rL~D~DEkVR~aaV~ai~~la~~~l---~~V~-----~elL~~LaeR~RDKK~~VRkeAm~~La~LY~~~ 407 (1674)
...+..-+.+-...||..++..+..+..... ..+. ..+...+..-+.|.++.||..|-..+..+|..+
T Consensus 133 ~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 133 LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 7888888999999999999998877654333 2221 346789999999999999999999999999976
No 37
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.28 E-value=0.053 Score=52.02 Aligned_cols=86 Identities=23% Similarity=0.232 Sum_probs=65.8
Q ss_pred hhcccccc-cCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHH
Q 000319 260 VPYLTGEL-LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQ 338 (1674)
Q Consensus 260 iP~Le~EL-~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~~~e 338 (1674)
||.|-..| ..++..+|..|+.+||++- .+.+...++..+.|.++.||.+.+...+.+ - ..+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i-~-------~~~ 62 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRI-G-------DPE 62 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC-H-------HHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh-C-------CHH
Confidence 45666667 7889999999999999431 235666666677999999999999999864 1 247
Q ss_pred HHHHHHhhhCCC-hhHHHHHHHHHHH
Q 000319 339 ILTALCDRLLDF-DENVRKQVVAVIC 363 (1674)
Q Consensus 339 Ii~~L~~rL~D~-DEkVR~aaV~ai~ 363 (1674)
.+..|.+.+.|. +..||.+++.+++
T Consensus 63 ~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 63 AIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp THHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 888999988775 4567999888763
No 38
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.24 E-value=1.1 Score=57.76 Aligned_cols=100 Identities=26% Similarity=0.193 Sum_probs=80.3
Q ss_pred cccccccCCChHHHHHHHHHHHHhhcCCCCCchhhc-HHHHHHHHhhhc-----CCChhHHHHHHHHhHHHHhcCCCCCC
Q 000319 262 YLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQF-HSVFSEFLKRLT-----DRIVAVRMSVLEHVKSCLLTDPSRAD 335 (1674)
Q Consensus 262 ~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y-~~~w~~fL~R~~-----D~s~~VR~~~ve~~~~iL~s~p~~~~ 335 (1674)
+|+.-|..+-+.+|.-||..|.++|+. |+.-- |.+-...|++.. |.+++||++.++..+.++.+-.++..
T Consensus 224 ~l~~LL~d~~p~VRS~a~~gv~k~~s~----fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~ 299 (1005)
T KOG1949|consen 224 ELYSLLEDPYPMVRSTAILGVCKITSK----FWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPL 299 (1005)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHH----HHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhH
Confidence 345556778899999999999999985 55544 345667777764 57889999999999998876545555
Q ss_pred hHHHHHHHHhhhCCChhHHHHHHHHHHHHh
Q 000319 336 APQILTALCDRLLDFDENVRKQVVAVICDV 365 (1674)
Q Consensus 336 ~~eIi~~L~~rL~D~DEkVR~aaV~ai~~l 365 (1674)
-..++++|.--|+|.-|+||.|+|..+..+
T Consensus 300 le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 300 LEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 678899999999999999999999887554
No 39
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.15 E-value=12 Score=47.82 Aligned_cols=256 Identities=17% Similarity=0.191 Sum_probs=143.8
Q ss_pred cccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHh
Q 000319 266 ELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCD 345 (1674)
Q Consensus 266 EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~~~eIi~~L~~ 345 (1674)
-+.+.+-.+|....++|+.+.-.-+.-=-.-|..+-...++|.-|+.+.||.+.|.+.-..= .-+.++...+...|..
T Consensus 99 g~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Q--e~~~neen~~~n~l~~ 176 (885)
T COG5218 99 GTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQ--EMELNEENRIVNLLKD 176 (885)
T ss_pred cccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH--hccCChHHHHHHHHHH
Confidence 35578999999999999987654331012234556667889999999999999999876532 1222334455554444
Q ss_pred h-hCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCccccccccc
Q 000319 346 R-LLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWI 424 (1674)
Q Consensus 346 r-L~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VRkeAm~~La~LY~~~~~~~~~~~~~~~~~~wI 424 (1674)
- -.||-+.||.+|.--| .|+..++-.+.||.||=....|+- +|....+++.+ -++..|
T Consensus 177 ~vqnDPS~EVRr~allni---------~vdnsT~p~IlERarDv~~anRr~-------vY~r~Lp~iGd-----~~~lsi 235 (885)
T COG5218 177 IVQNDPSDEVRRLALLNI---------SVDNSTYPCILERARDVSGANRRM-------VYERCLPRIGD-----LKSLSI 235 (885)
T ss_pred HHhcCcHHHHHHHHHHHe---------eeCCCcchhHHHHhhhhhHHHHHH-------HHHHHhhhhcc-----hhhccc
Confidence 3 3899999999965554 455666777899999999888874 45544444321 234444
Q ss_pred hHHHhhhhc-cCC--CC--chhHHHHhhcCCcCCCCCHHHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHH--HHHHH
Q 000319 425 PGKILRCLY-DKD--FG--SDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRI----EMKALEKILEQKQR--LQQEM 493 (1674)
Q Consensus 425 PskIL~~~Y-~nD--~~--~~lVE~vL~e~LlP~~~~~~~R~~~ll~l~~~LD~~----~~kal~~il~~k~~--l~~~~ 493 (1674)
--+|+-.=+ -+| +. ...+|-+....+.|.+.. ++.+...||-. .++|+..+|..+.- .+..+
T Consensus 236 ~kri~l~ewgl~dRe~sv~~a~~d~ia~~w~~~~d~~-------lveLle~lDvSr~sv~v~aik~~F~~R~D~ls~~eF 308 (885)
T COG5218 236 DKRILLMEWGLLDREFSVKGALVDAIASAWRIPEDLR-------LVELLEFLDVSRRSVLVAAIKGVFEKRPDVLSEKEF 308 (885)
T ss_pred cceehhhhhcchhhhhhHHHHHHHHHHHHhccccccc-------HHHHHHHHhhhhHHHHHHHHHHHHhhccccchhhhc
Confidence 444442211 222 22 237888888888877643 33333334332 22333333322111 11111
Q ss_pred HHHHHHHhhhcCCCcHHH-HHH----HHHHHHHHHhhcCCchHHHHHHHHHHhhchHHHHHHHHHH
Q 000319 494 QRYLSLRQMHQDGDAPEI-QKK----ILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNL 554 (1674)
Q Consensus 494 ~~~l~l~~~~~~~d~~ei-~~k----L~~~I~~Ls~~fPDp~Ka~~~L~kf~klnD~Ri~kLLk~~ 554 (1674)
-.|+ +..... +..-. .+- |...|.-|-.-||+..+....+..+-.+.++..|.-+-++
T Consensus 309 Pe~~--w~d~T~-E~tfL~rt~~lyCldnNitell~~fPe~~~L~~~~~hyvslry~sSYnt~cfi 371 (885)
T COG5218 309 PEYL--WSDPTE-ENTFLSRTELLYCLDNNITELLGRFPESLALPDLESHYVSLRYRSSYNTLCFI 371 (885)
T ss_pred HHHH--hhCchH-HHHHHHHHHHHHHHhccHHHHHhhchhhhcchHHHhhheeeeeccccchhHHH
Confidence 1111 000000 00000 111 1222444445599999988888888777776644444333
No 40
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.97 E-value=4.1 Score=53.52 Aligned_cols=376 Identities=13% Similarity=0.084 Sum_probs=194.1
Q ss_pred hhhhcccccccCCChHHHHHHHH-HHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCCh
Q 000319 258 GVVPYLTGELLTDQLDTRLKAVG-LVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADA 336 (1674)
Q Consensus 258 ~ViP~Le~EL~sed~~~Rl~At~-llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~~ 336 (1674)
+.+|.+-.+|.+.-...|..|++ +++.|--+. ++.. +|...++-..=.+.+.--.+=.++...-..+|.. +
T Consensus 13 ~ei~elks~l~s~~~~kr~~a~kkvIa~Mt~G~--DvSs----lF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~--a 84 (734)
T KOG1061|consen 13 GEIPELKSQLNSQSKEKRKDAVKKVIAYMTVGK--DVSS----LFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL--A 84 (734)
T ss_pred hhchHHHHHhhhhhhhhHHHHHHHHHhcCccCc--chHh----hhHHHHhhcccCCchHHHHHHHHHHHhhccCchH--H
Confidence 34555555555555566666664 566665542 4555 4444554444445666666666666655667753 4
Q ss_pred HHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCc
Q 000319 337 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSI 416 (1674)
Q Consensus 337 ~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VRkeAm~~La~LY~~~~~~~~~~~~ 416 (1674)
...+..+.+-.-|+++.+|.-|+...| +-....+.+-+..-+..-.+|+.+-||+.|...++++|.....-+.
T Consensus 85 ~~avnt~~kD~~d~np~iR~lAlrtm~---~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~---- 157 (734)
T KOG1061|consen 85 ILAVNTFLKDCEDPNPLIRALALRTMG---CLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVE---- 157 (734)
T ss_pred HhhhhhhhccCCCCCHHHHHHHhhcee---eEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhcc----
Confidence 456788888899999999998666553 3333444455666778888999999999999999999985432211
Q ss_pred cccccccchHHHhhhhccCCCCc-----hhHHHHhhcC--CcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 000319 417 NQNEFEWIPGKILRCLYDKDFGS-----DTIESVLCGS--LFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRL 489 (1674)
Q Consensus 417 ~~~~~~wIPskIL~~~Y~nD~~~-----~lVE~vL~e~--LlP~~~~~~~R~~~ll~l~~~LD~~~~kal~~il~~k~~l 489 (1674)
-..++..+=.++.+.++.. ..+..+.-.. -.++.++ ..+...++....-+++.+. ..|+..
T Consensus 158 ----~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~-~~~~~~lL~al~ec~EW~q---i~IL~~---- 225 (734)
T KOG1061|consen 158 ----DSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELN-PQLINKLLEALNECTEWGQ---IFILDC---- 225 (734)
T ss_pred ----ccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCccccc-HHHHHHHHHHHHHhhhhhH---HHHHHH----
Confidence 1122333333333233220 1111111111 1111111 3445555554444444322 111111
Q ss_pred HHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhc-CCchHHHHHHHHHHhhchHHHHHHHH-------HHhc--CCC
Q 000319 490 QQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSF-AEPAKAEENFLILDQLKDANVWKILM-------NLLD--SNT 559 (1674)
Q Consensus 490 ~~~~~~~l~l~~~~~~~d~~ei~~kL~~~I~~Ls~~f-PDp~Ka~~~L~kf~klnD~Ri~kLLk-------~~id--~~t 559 (1674)
+..+.-.+..+.+.-+..+--+|...= +--.-+...+..+.++.....-.+++ ++++ ++.
T Consensus 226 ----------l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~e~ 295 (734)
T KOG1061|consen 226 ----------LAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSESEI 295 (734)
T ss_pred ----------HHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccchh
Confidence 111111111111111111111110000 00001112222222211110001111 1222 234
Q ss_pred CHHHHHHHHHHHHHHhc---CC-Cch----H--HHHHHHHHhhhccccChhHHHHHHHHHHhhcccchhhhHHHHHHHHH
Q 000319 560 SFDQAFTGRDDLLKILG---AK-HRL----Y--DFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILG 629 (1674)
Q Consensus 560 d~~tv~~a~kELlkkL~---~~-~~l----~--e~l~~Ll~RsS~lifNks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~ 629 (1674)
.|--++|+.--+.++-+ .+ ..+ . -+++..-..+-..+.|.+++.+++..+..............+..-+-
T Consensus 296 qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig 375 (734)
T KOG1061|consen 296 QYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIG 375 (734)
T ss_pred hHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhh
Confidence 44444555444433321 11 000 0 13444455677778899999999998877655555566777778888
Q ss_pred HHHhhCCcCccccHHHHHHHHhhccccchHHHHHHHHHhhcc
Q 000319 630 ILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGT 671 (1674)
Q Consensus 630 ~IS~~~P~lFk~~v~~Li~lL~~~~~~~~~~aLkiLak~~k~ 671 (1674)
.++...+.. .+++..|+++++-.-..++.+++.++..+...
T Consensus 376 ~~aik~e~~-~~cv~~lLell~~~~~yvvqE~~vvi~dilRk 416 (734)
T KOG1061|consen 376 RLAIKAEQS-NDCVSILLELLETKVDYVVQEAIVVIRDILRK 416 (734)
T ss_pred hhhhhhhhh-hhhHHHHHHHHhhcccceeeehhHHHHhhhhc
Confidence 888888888 77899999999975555667777777766543
No 41
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=94.84 E-value=11 Score=50.36 Aligned_cols=136 Identities=18% Similarity=0.119 Sum_probs=76.1
Q ss_pred CChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChh---HHHHHHHHhHHHHhcCCCCCChHHH-------
Q 000319 270 DQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVA---VRMSVLEHVKSCLLTDPSRADAPQI------- 339 (1674)
Q Consensus 270 ed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~---VR~~~ve~~~~iL~s~p~~~~~~eI------- 339 (1674)
|-.+.|-.|++.+-.+.-+-... -+|+=+=.-|.+|..- ... +|...+...-+++.-+|-.+.+.+.
T Consensus 337 ~~ae~R~~av~fI~~iv~al~~~--~~~~fV~vl~~~~cag-v~~~s~~ls~~~isl~~~~~~~P~g~~a~~n~~~d~~~ 413 (1529)
T KOG0413|consen 337 DLAEFRTNAVTFIHKIVEALPYT--YTYDFVQVLFKGRCAG-VKSLSTELSSILISLFDFTAPDPPGLDAEQNEEEDEEE 413 (1529)
T ss_pred hhhcchhhHHHHHHHHHHhcccc--cccHHHHHHHHHHccc-cchhHHHHHHHHHHHHHHcCCCCCcchHHHhhhhhhhh
Confidence 44667999999998888542211 1222111234444443 333 4444454444444555644433322
Q ss_pred ---HHHHHhhhCCChhHHHHHHHHHHHHh-hhhhcCCCCHH------------------HHHHHHHhhccCChhHHHHHH
Q 000319 340 ---LTALCDRLLDFDENVRKQVVAVICDV-ACHALNSIPVE------------------TVKLVAERLRDKSVLVKRYTM 397 (1674)
Q Consensus 340 ---i~~L~~rL~D~DEkVR~aaV~ai~~l-a~~~l~~V~~e------------------lL~~LaeR~RDKK~~VRkeAm 397 (1674)
++.+..|.-|.|--||....--..+. ...+-+.++.. +-..+..||-||++.||..|+
T Consensus 414 ~g~~~~~~~r~~~~dv~v~~~els~~~~e~e~dn~~~~s~s~e~qk~~k~~~~v~evg~~~~~~~~rClDkaaavR~~al 493 (1529)
T KOG0413|consen 414 EGEDEEEEERNEQDDVAVKEEELSDSDEENEGDNEENVSKSKEEQKKEKKAKEVKEVGVLYNIVYMRCLDKAAAVRLHAL 493 (1529)
T ss_pred ccchHhhhhhhcchHHHHHHHhcCchHhhhcccchhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHH
Confidence 24677788888888887633211000 00011111111 223589999999999999999
Q ss_pred HHHHHHHHHHh
Q 000319 398 ERLADIFRGCC 408 (1674)
Q Consensus 398 ~~La~LY~~~~ 408 (1674)
..++++-....
T Consensus 494 ~s~tk~l~l~~ 504 (1529)
T KOG0413|consen 494 NSLTKILQLQS 504 (1529)
T ss_pred HHHHHHHHHhc
Confidence 99999988543
No 42
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.73 E-value=3.5 Score=53.36 Aligned_cols=188 Identities=19% Similarity=0.158 Sum_probs=126.8
Q ss_pred hcccccccCCChHHHHHHHHHHHHhhcCCCCCchh-----hcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhc----CC
Q 000319 261 PYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE-----QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT----DP 331 (1674)
Q Consensus 261 P~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~-----~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s----~p 331 (1674)
|-|.--|++.|-.+|..|..++-+.|--.+.+... --..-|....+=..|--|.||-..++.+-.+..- -|
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP 256 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP 256 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 66778899999999999999999999876655422 2233355555677899999999999888776542 25
Q ss_pred CCCChHHHHHHHHh-hhCCChhHHHHHHHHHHHHhhhhhcCCCCHH-HHHHHHHhhccCChhHHHHHHHHHHHHHHHHhh
Q 000319 332 SRADAPQILTALCD-RLLDFDENVRKQVVAVICDVACHALNSIPVE-TVKLVAERLRDKSVLVKRYTMERLADIFRGCCL 409 (1674)
Q Consensus 332 ~~~~~~eIi~~L~~-rL~D~DEkVR~aaV~ai~~la~~~l~~V~~e-lL~~LaeR~RDKK~~VRkeAm~~La~LY~~~~~ 409 (1674)
.. ...++++.+.+ --.|+--.||.+|++.+-.++.....+--.+ +|..|..-+-|+.-+||..+...|.+|=++-.-
T Consensus 257 ~~-i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra~ 335 (1005)
T KOG1949|consen 257 PT-ILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRAA 335 (1005)
T ss_pred HH-HHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhhhh
Confidence 42 23455544444 4588999999999999988876555443333 567888889999999999999999998775431
Q ss_pred hccCCCccccccccchHHHhhhhccCCCC--chhHHHHhhcCCcCCCCCHH
Q 000319 410 RNFNGSINQNEFEWIPGKILRCLYDKDFG--SDTIESVLCGSLFPTGFSVK 458 (1674)
Q Consensus 410 ~~~~~~~~~~~~~wIPskIL~~~Y~nD~~--~~lVE~vL~e~LlP~~~~~~ 458 (1674)
+-+.-||--.+-.--..|-+ ..-+-+.++...||..-+.+
T Consensus 336 ---------~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~k~ee 377 (1005)
T KOG1949|consen 336 ---------KFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFLPVNKPEE 377 (1005)
T ss_pred ---------hhhccccHHHHHHHHhccccHHHHHHHHHHHHhhcCCCCcHH
Confidence 12233443333222233322 12344455666777765443
No 43
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=94.51 E-value=0.85 Score=51.97 Aligned_cols=98 Identities=17% Similarity=0.098 Sum_probs=65.3
Q ss_pred ccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHH-HHHHHhhhcCCChhHHHHHHHHhHHHHhcCCC--C---CC--h
Q 000319 265 GELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSV-FSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPS--R---AD--A 336 (1674)
Q Consensus 265 ~EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~-w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~--~---~~--~ 336 (1674)
..+......+|..|..+|-.|+..-+ -++.+ ......-..++++.||..+++++..++...+. . .. .
T Consensus 101 ~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~ 175 (228)
T PF12348_consen 101 KKLGDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFL 175 (228)
T ss_dssp HGGG---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHH
T ss_pred HHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchH
Confidence 33445667788888888888886422 12345 55555568889999999999999888887761 1 11 2
Q ss_pred HHHHHHHHhhhCCChhHHHHHHHHHHHHhhh
Q 000319 337 PQILTALCDRLLDFDENVRKQVVAVICDVAC 367 (1674)
Q Consensus 337 ~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~ 367 (1674)
..+++.+...+.|++..||.++-.++..+..
T Consensus 176 ~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 176 KQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999888877643
No 44
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.49 E-value=0.45 Score=60.71 Aligned_cols=183 Identities=17% Similarity=0.172 Sum_probs=121.1
Q ss_pred hHHHHHHHHHHHHhcccc-cccHHHHHHHHHhhcCCC---cHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCCCCCCC
Q 000319 162 SVLSSMQTIMIVLLEESE-DIQEDLLVILLSALGRNK---NDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHS 237 (1674)
Q Consensus 162 ~V~~~m~~IL~~vI~Ese-~vp~~lLd~IL~~l~~~~---~~~a~~lA~~v~~~~~dkL~~~I~q~f~~~l~~d~~~~~~ 237 (1674)
.+....+.|.++|+.... .-.+++|..+...+..+. ...|+.--..||+..++.+...+.. .
T Consensus 105 lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~--------------r 170 (885)
T KOG2023|consen 105 LIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLT--------------R 170 (885)
T ss_pred HHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhccc--------------C
Confidence 344444444444444432 356788988888885432 2378888888999988766554320 0
Q ss_pred cchHHHHHHHHHhhcchhhhhhhhcccccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHH
Q 000319 238 HIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRM 317 (1674)
Q Consensus 238 ~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~ 317 (1674)
.+ --.||-+=.-.++..+.+|..|+..+-..+-....++...-..-.....-+.+|.++.||.
T Consensus 171 pl-----------------~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk 233 (885)
T KOG2023|consen 171 PL-----------------NIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRK 233 (885)
T ss_pred ch-----------------HHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHH
Confidence 01 1112322233456789999999999998876654333322222222334567999999999
Q ss_pred HHHHHhHHHHhcCCCC--CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHH
Q 000319 318 SVLEHVKSCLLTDPSR--ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETV 378 (1674)
Q Consensus 318 ~~ve~~~~iL~s~p~~--~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL 378 (1674)
.+..+...+|..+|++ .-...|++++..+-.|.||.|-++||+-.-.+|... ++.++|
T Consensus 234 ~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqp---i~~~~L 293 (885)
T KOG2023|consen 234 NVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQP---ICKEVL 293 (885)
T ss_pred HHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCc---CcHHHH
Confidence 9999999988888763 123589999999999999999999998886666544 555555
No 45
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.32 E-value=0.46 Score=56.92 Aligned_cols=97 Identities=19% Similarity=0.246 Sum_probs=77.5
Q ss_pred ccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCC-----------CC
Q 000319 267 LLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR-----------AD 335 (1674)
Q Consensus 267 L~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~-----------~~ 335 (1674)
+++.+..+|..|++.+| +++--+-.++.+|=.+|...+.+ | ...||+.+++.+-+++..|... ..
T Consensus 36 v~~~~~~vR~~al~cLG-l~~Lld~~~a~~~l~l~~~~~~~--~-~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~ 111 (298)
T PF12719_consen 36 VQSSDPAVRELALKCLG-LCCLLDKELAKEHLPLFLQALQK--D-DEEVKITALKALFDLLLTHGIDIFDSESDNDESVD 111 (298)
T ss_pred hcCCCHHHHHHHHHHHH-HHHHhChHHHHHHHHHHHHHHHh--C-CHHHHHHHHHHHHHHHHHcCchhccchhccCccch
Confidence 45689999999999999 66655657888776666666633 5 9999999999999999988421 12
Q ss_pred hHHHHHHHHhhhCCChhHHHHHHHHHHHHhhh
Q 000319 336 APQILTALCDRLLDFDENVRKQVVAVICDVAC 367 (1674)
Q Consensus 336 ~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~ 367 (1674)
...+++.|..-|.+.++.||..||+.+|.+-.
T Consensus 112 ~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 112 SKSLLKILTKFLDSENPELQAIAVEGLCKLLL 143 (298)
T ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 34688888889998899999999999988654
No 46
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.29 E-value=12 Score=49.96 Aligned_cols=129 Identities=13% Similarity=0.162 Sum_probs=100.4
Q ss_pred ccCCChHHHHHHHH-HHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHh
Q 000319 267 LLTDQLDTRLKAVG-LVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCD 345 (1674)
Q Consensus 267 L~sed~~~Rl~At~-llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~~~eIi~~L~~ 345 (1674)
|.+-+...|+.|.+ ++..|..+. ++..=+|++-+.|..| +++++..+=-+...+-..+|. ++-..++.+.+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~--dmssLf~dViK~~~tr----d~ElKrL~ylYl~~yak~~P~--~~lLavNti~k 99 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGE--DMSSLFPDVIKNVATR----DVELKRLLYLYLERYAKLKPE--LALLAVNTIQK 99 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHhccCHH--HHHHHHHHHHh
Confidence 66777888888775 567777654 5778888888888854 788888776666666667773 44456789999
Q ss_pred hhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000319 346 RLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 406 (1674)
Q Consensus 346 rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VRkeAm~~La~LY~~ 406 (1674)
=|.|+++.+|..|+.+++.+-.. .+-+-++..+.+-+-|+.+-||+.|+-+++++|+.
T Consensus 100 Dl~d~N~~iR~~AlR~ls~l~~~---el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l 157 (757)
T COG5096 100 DLQDPNEEIRGFALRTLSLLRVK---ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL 157 (757)
T ss_pred hccCCCHHHHHHHHHHHHhcChH---HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc
Confidence 99999999999988877654433 33445678889999999999999999999999973
No 47
>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix. The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. The domain is essential for the recruitment of proteins to double stranded breaks in DNA, which is mediated by interaction with methylated Lys 79 of histone H3 []. ; PDB: 3LGL_A 1XNI_B 3LGF_A 2G3R_A 2IG0_A 3LH0_A 1SSF_A.
Probab=94.26 E-value=0.079 Score=54.61 Aligned_cols=46 Identities=30% Similarity=0.435 Sum_probs=36.1
Q ss_pred CcccccceEEEecCCCCceEEEEEEeecCCCCeeEEEccCCcceeee
Q 000319 1372 IEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLR 1418 (1674)
Q Consensus 1372 ~~~lvG~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdDgd~E~l~ 1418 (1674)
|.++||.||---|-.+.-||.|+|+. +....+.+|..|||.+..|.
T Consensus 1 ~~~~iG~rV~AkWS~n~yyY~G~I~~-~~~~~kykv~FdDG~~~~v~ 46 (122)
T PF09038_consen 1 GSSFIGLRVFAKWSDNGYYYPGKITS-DKGKNKYKVLFDDGYECRVL 46 (122)
T ss_dssp ---STT-EEEEESSTTSEEEEEEEEE-EETTTEEEEEETTS-EEEEE
T ss_pred CCcccccEEEEEEccCCcccCceEee-cCCCCeEEEEecCCccceec
Confidence 45799999999999777779999999 57789999999999986554
No 48
>KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only]
Probab=94.26 E-value=0.026 Score=65.26 Aligned_cols=67 Identities=25% Similarity=0.397 Sum_probs=51.5
Q ss_pred CCCCCCCcccccceEEEecCCCCceEEEEEEeecC-CCCeeEEEccCCc----ceeeec---ccccEEEecCCCC
Q 000319 1366 KNAGVNIEDLIGYRIKVWWPMDKQFYEGTIKSYDP-IKKKHVILYDDED----VEVLRL---DKERWELLDNGRK 1432 (1674)
Q Consensus 1366 ~~~~~~~~~lvG~rv~V~Wp~D~~~Y~G~V~~y~~-~~~~H~v~YdDgd----~E~l~L---~~e~~~~~~~~~~ 1432 (1674)
.-+...++.+||++|..-||+++.||++.|+.|+. ...+|.+.||-.+ ++|++| ..|.++|...+..
T Consensus 151 ~~~n~pp~slvgr~v~~k~pdk~~~te~iit~~~~~~E~~~~l~~~~~~~~~p~~wvdl~~I~p~DIrw~g~~~~ 225 (273)
T KOG4675|consen 151 SWGNVPPESLVGRKVWIKWPDKRKFTEAIITQYDAEKEGHHLLVPDINDCNDPWEWVDLREISPEDIRWEGGDPG 225 (273)
T ss_pred ccccCCchhhccccccccCcccccccccccccchhhhhhhhhcccccccccCCccccccccCCHHhccccCCCCC
Confidence 34456777899999999999999999999999555 5567888888655 566666 3777777765443
No 49
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.18 E-value=11 Score=47.48 Aligned_cols=295 Identities=16% Similarity=0.206 Sum_probs=163.7
Q ss_pred CcchHHHHHHHHHHHhhhcCCCCCCChh-------HHHHHHHHhcCCCCCCCCChhhHHHHHHHHHhhhh-hheeccCC-
Q 000319 69 DKDVKLLVATCICEITRITAPEAPYSDD-------VLKLIVGTFSGLKDTGGPSFGRRVVILETLAKYRS-CVVMLDLE- 139 (1674)
Q Consensus 69 D~~Vr~~vAcCLadIlRI~APdAPytdd-------~lkli~~~f~~L~d~~~p~f~q~~~lLesLA~vks-~vlm~DL~- 139 (1674)
+.+.-..+.-||..++.-..-+.++.+. ++..++..+-...+.+.. ....+|+.++.+=. +|-.++.+
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~---~~~~~L~~~~~l~~~iv~~l~~~~ 132 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSD---LDDRVLELLSRLINLIVRSLSPEK 132 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccc---cchHHHHHHHHHHHHHHHhCCHHH
Confidence 3344444555566666555444434432 222333333222222222 45566777765433 33445555
Q ss_pred chHHHHHHHHHHHHh-----hcC------CChhhHHHHHHHHHHHHhccccccc--HHHHHHHHHhhcCCCcH----HHH
Q 000319 140 CDELVNEMYSTFFAV-----ASD------DHPESVLSSMQTIMIVLLEESEDIQ--EDLLVILLSALGRNKND----TAR 202 (1674)
Q Consensus 140 ~~~Li~~lF~~ff~i-----v~~------~~~~~V~~~m~~IL~~vI~Ese~vp--~~lLd~IL~~l~~~~~~----~a~ 202 (1674)
.++++.++|..|+.. ... ..+.........|+..+=-+. .+| .++++-++......... ++.
T Consensus 133 q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~-~~~~~~~ll~~l~~~~~~~~~~~~~~~~~ 211 (415)
T PF12460_consen 133 QQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDV-SLPDLEELLQSLLNLALSSEDEFSRLAAL 211 (415)
T ss_pred HHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCccc-CccCHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 578899999999811 000 123334444444444332222 233 23455444433222222 556
Q ss_pred HHHHHHHHHh--hhhhhHHHHHHHHHhhcCCCCCCCCcchHHH--------HHHHHHhhcchhhhhhhhcccccccCCCh
Q 000319 203 RLAMNVIEQC--AGKLEAGIKQFLVSSMSGDSRPGHSHIDYHE--------VIYDVYRCSPQILSGVVPYLTGELLTDQL 272 (1674)
Q Consensus 203 ~lA~~v~~~~--~dkL~~~I~q~f~~~l~~d~~~~~~~~~~h~--------Li~eL~~~~P~lL~~ViP~Le~EL~sed~ 272 (1674)
++..-++|++ .+.+...+..++..+ .............+ |+...+..+.+++...+-.| .+ .
T Consensus 212 ~~la~LvNK~~~~~~l~~~l~~~~~~~--~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL----~~--~ 283 (415)
T PF12460_consen 212 QLLASLVNKWPDDDDLDEFLDSLLQSI--SSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELL----SS--P 283 (415)
T ss_pred HHHHHHHcCCCChhhHHHHHHHHHhhh--cccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHh----CC--h
Confidence 7777788884 344666666666554 11111111112222 22222222333344433332 22 7
Q ss_pred HHHHHHHHHHHHhhcC-CC-------CCc-----hhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCC---CCh
Q 000319 273 DTRLKAVGLVGDLFAV-PG-------SAN-----NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR---ADA 336 (1674)
Q Consensus 273 ~~Rl~At~llG~mfs~-~~-------~~~-----a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~---~~~ 336 (1674)
.+...|.+.+|-+++. ++ ++. =+-|-.+....+..+...+..+|..++.+...+|.+-|.. .+.
T Consensus 284 ~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l 363 (415)
T PF12460_consen 284 ELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPEL 363 (415)
T ss_pred hhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 7899999999999988 32 110 1234555666788888888889999999999999877742 345
Q ss_pred HHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCH
Q 000319 337 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV 375 (1674)
Q Consensus 337 ~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~ 375 (1674)
.+|+.-|.+.|-=+|..||.++..++..+.......+.+
T Consensus 364 ~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~ 402 (415)
T PF12460_consen 364 PTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISE 402 (415)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 678888888887788889999999998877766444443
No 50
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.02 E-value=0.77 Score=62.07 Aligned_cols=151 Identities=15% Similarity=0.177 Sum_probs=107.5
Q ss_pred hHHHHHHHHHhh---cc--hhhhhhhhcccccc----cCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcC
Q 000319 240 DYHEVIYDVYRC---SP--QILSGVVPYLTGEL----LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTD 310 (1674)
Q Consensus 240 ~~h~Li~eL~~~---~P--~lL~~ViP~Le~EL----~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D 310 (1674)
+.|++|..+..- .| .+|....|.+..-- ...+++++..||-.||+|.-- ++.|-..|-+++-.-+.+.
T Consensus 896 d~~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i-Sa~fces~l~llftimeks-- 972 (1251)
T KOG0414|consen 896 DLADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI-SAEFCESHLPLLFTIMEKS-- 972 (1251)
T ss_pred hHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcC--
Confidence 466666655432 33 56666777766544 345699999999999999865 3456554444444444432
Q ss_pred CChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCCh
Q 000319 311 RIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSV 390 (1674)
Q Consensus 311 ~s~~VR~~~ve~~~~iL~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~ 390 (1674)
.+|-||.-+|=.++++...-|.. +......|-.||+|.+..||..|+.++..+.-...-.|-. .+..+|--+-|-..
T Consensus 973 p~p~IRsN~VvalgDlav~fpnl--ie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKG-ql~eMA~cl~D~~~ 1049 (1251)
T KOG0414|consen 973 PSPRIRSNLVVALGDLAVRFPNL--IEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKG-QLSEMALCLEDPNA 1049 (1251)
T ss_pred CCceeeecchheccchhhhcccc--cchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcc-cHHHHHHHhcCCcH
Confidence 67899999999999998887764 4467899999999999999999999998877655443333 24566777888888
Q ss_pred hHHHHH
Q 000319 391 LVKRYT 396 (1674)
Q Consensus 391 ~VRkeA 396 (1674)
.||.-|
T Consensus 1050 ~IsdlA 1055 (1251)
T KOG0414|consen 1050 EISDLA 1055 (1251)
T ss_pred HHHHHH
Confidence 766544
No 51
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=93.84 E-value=0.078 Score=53.00 Aligned_cols=106 Identities=12% Similarity=0.070 Sum_probs=54.4
Q ss_pred hhhcccccccCCChHHHHHHHHHHHHhhcCCCCCchh-hcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCC--
Q 000319 259 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE-QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRAD-- 335 (1674)
Q Consensus 259 ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~-~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~-- 335 (1674)
++|.|-.-|...+..+|..|..+|+.|.......... .....+..++.-++|.++.||..++....++....+....
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 6667777777888999999999999988762100000 0113344444444445555555555555544333221000
Q ss_pred -hHHHHHHHHhhhCCChhHHHHHHHHHHHH
Q 000319 336 -APQILTALCDRLLDFDENVRKQVVAVICD 364 (1674)
Q Consensus 336 -~~eIi~~L~~rL~D~DEkVR~aaV~ai~~ 364 (1674)
...+++.|...|.+.|..||..++.+++.
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~ 117 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSN 117 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 01133444444444455555554444443
No 52
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=93.53 E-value=9.2 Score=49.96 Aligned_cols=63 Identities=19% Similarity=0.211 Sum_probs=48.3
Q ss_pred cccccCCChHHHHHHHHHHHHhhcCCCCC-----------------c------------------------hhhc-HHHH
Q 000319 264 TGELLTDQLDTRLKAVGLVGDLFAVPGSA-----------------N------------------------NEQF-HSVF 301 (1674)
Q Consensus 264 e~EL~sed~~~Rl~At~llG~mfs~~~~~-----------------~------------------------a~~y-~~~w 301 (1674)
-.+|..|.++.|..+.+++.++|+..|.. | ++.| |.+-
T Consensus 722 v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~ 801 (1172)
T KOG0213|consen 722 VLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQIC 801 (1172)
T ss_pred hhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHH
Confidence 35678899999999999999999876532 1 1222 6677
Q ss_pred HHHHhhhcCCChhHHHHHHHHhHHH
Q 000319 302 SEFLKRLTDRIVAVRMSVLEHVKSC 326 (1674)
Q Consensus 302 ~~fL~R~~D~s~~VR~~~ve~~~~i 326 (1674)
..-|.|.+.+++.||....+.+..|
T Consensus 802 stiL~rLnnksa~vRqqaadlis~l 826 (1172)
T KOG0213|consen 802 STILWRLNNKSAKVRQQAADLISSL 826 (1172)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHH
Confidence 7778899999999999877766553
No 53
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.39 E-value=0.2 Score=50.34 Aligned_cols=66 Identities=20% Similarity=0.169 Sum_probs=50.6
Q ss_pred HHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCC---CHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000319 337 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI---PVETVKLVAERLRDKSVLVKRYTMERLADI 403 (1674)
Q Consensus 337 ~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V---~~elL~~LaeR~RDKK~~VRkeAm~~La~L 403 (1674)
.+|++.+..++.|.|.+||..||+++..++...-..+ =.+++..|..++.|-...||.-| +.|-++
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRL 94 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHH
Confidence 4788888889999999999999999988876443332 23567888889999999998877 555544
No 54
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.32 E-value=1.7 Score=59.13 Aligned_cols=126 Identities=15% Similarity=0.122 Sum_probs=90.5
Q ss_pred HHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHH-HHH
Q 000319 303 EFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETV-KLV 381 (1674)
Q Consensus 303 ~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL-~~L 381 (1674)
.|+-|+.|+.|.||+.|++..+-.+.+-|+.-...-.++++.=.|.|-...||+.+|+++..+-...-..-..+++ .-+
T Consensus 291 VFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRF 370 (1048)
T KOG2011|consen 291 VFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRF 370 (1048)
T ss_pred eeeeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 6788999999999999999999888888864333467899999999999999999999998887653222222221 122
Q ss_pred HHh-----hccCChhHHHHHHHHHHHHHHHHhhhccCCCccccccccchHHHhhhhccCCCCc
Q 000319 382 AER-----LRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGS 439 (1674)
Q Consensus 382 aeR-----~RDKK~~VRkeAm~~La~LY~~~~~~~~~~~~~~~~~~wIPskIL~~~Y~nD~~~ 439 (1674)
.+| .||-...||..++..+-.++..-+.. .+. -..|.+|+|+-+.+.
T Consensus 371 K~RIVeMadrd~~~~Vrav~L~~~~~~~~~g~L~-------d~d----i~~Vy~Li~d~~r~~ 422 (1048)
T KOG2011|consen 371 KDRIVEMADRDRNVSVRAVGLVLCLLLSSSGLLS-------DKD----ILIVYSLIYDSNRRV 422 (1048)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHhcccccC-------hhH----HHHHHHHHhccCcch
Confidence 222 58889999999998887776543211 111 234677888777653
No 55
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.16 E-value=1 Score=49.93 Aligned_cols=83 Identities=19% Similarity=0.153 Sum_probs=63.4
Q ss_pred HHHHHHhhcchhhhhhhhcccccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHh
Q 000319 244 VIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHV 323 (1674)
Q Consensus 244 Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~ 323 (1674)
.+-.|..-.|.++-..+|.|..-|..+++.+|..|...|.+++.. ++.+-.+.++..++.-..|.++.||.....+.
T Consensus 11 ~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~ 87 (178)
T PF12717_consen 11 ALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DMIKVKGQLFSRILKLLVDENPEIRSLARSFF 87 (178)
T ss_pred HHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---CceeehhhhhHHHHHHHcCCCHHHHHHHHHHH
Confidence 445566667888888888888888888888888888888888765 46666677778888888888888888877777
Q ss_pred HHHHhc
Q 000319 324 KSCLLT 329 (1674)
Q Consensus 324 ~~iL~s 329 (1674)
..++..
T Consensus 88 ~e~~~~ 93 (178)
T PF12717_consen 88 SELLKK 93 (178)
T ss_pred HHHHHh
Confidence 776665
No 56
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=92.80 E-value=79 Score=47.22 Aligned_cols=141 Identities=11% Similarity=0.091 Sum_probs=92.4
Q ss_pred hcccccccCCChHHHHHHHHHHHHhhcCCCCCch-----hhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCC
Q 000319 261 PYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANN-----EQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRAD 335 (1674)
Q Consensus 261 P~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a-----~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~ 335 (1674)
+.|-.-|...+.+++..|+..|..+-.+.. +.. .---+..-.||+. -+..+|...+.....|-..+.....
T Consensus 407 k~LV~LL~~~~~evQ~~Av~aL~~L~~~~~-e~~~aIi~~ggIp~LV~LL~s---~s~~iQ~~A~~~L~nLa~~ndenr~ 482 (2102)
T PLN03200 407 KVLVGLITMATADVQEELIRALSSLCCGKG-GLWEALGGREGVQLLISLLGL---SSEQQQEYAVALLAILTDEVDESKW 482 (2102)
T ss_pred hhhhhhhccCCHHHHHHHHHHHHHHhCCCH-HHHHHHHHcCcHHHHHHHHcC---CCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 334445667778999999999988775532 110 1112344455554 4678887777776654333321000
Q ss_pred ---hHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcC---CC-CHHHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 000319 336 ---APQILTALCDRLLDFDENVRKQVVAVICDVACHALN---SI-PVETVKLVAERLRDKSVLVKRYTMERLADIFR 405 (1674)
Q Consensus 336 ---~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~---~V-~~elL~~LaeR~RDKK~~VRkeAm~~La~LY~ 405 (1674)
....+..|...|..++.++|.+||-+++.++...-. .| ....+..|.+.+++....+|+.|...|++|-.
T Consensus 483 aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~ 559 (2102)
T PLN03200 483 AITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVR 559 (2102)
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 013457888899999999999999999999873211 12 22345567778888889999999999998854
No 57
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.79 E-value=63 Score=46.05 Aligned_cols=366 Identities=16% Similarity=0.193 Sum_probs=202.7
Q ss_pred HHHHccccCCCCCCHHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhchhhhhcCCC----cchHHHHHHHHHHHh
Q 000319 9 LKEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQD----KDVKLLVATCICEIT 84 (1674)
Q Consensus 9 l~~~g~kL~~~~~s~~eLlkrLk~L~~~Ls~~dQ~~~~~~~~sl~~~~~~Lv~~~LL~HkD----~~Vr~~vAcCLadIl 84 (1674)
|.-||--|+..+.+ .+--+-++.+-..|.-.+-++.. =.-+.+-|+-..+.+-.+ -+=..-.+.|=-|-.
T Consensus 725 v~~~glll~~i~s~-~~~~~~~e~~l~yl~~g~g~~~~-----~~l~~~~l~~s~~~k~~~l~~~i~e~~~~~~~~~ds~ 798 (1702)
T KOG0915|consen 725 VQKFGLLLQHICSS-KASSKILEIALGYLFSGSGDKAE-----EILFAAGLALSFLWKQVPLTFDIGEAINYTALGTDSN 798 (1702)
T ss_pred hhhHHHHHhhhcCh-hhhhhHHHHHHhHhhcCCCCcHH-----HHHHHHHHHHHHHHhccchHHHHHHHhhhhhcccchh
Confidence 33444444433322 23334444445566555554321 122333333333333222 222333344445666
Q ss_pred hhcCCCCC-----CChhHHHHHHHHhcCCCCCCCCChhhH-----HHHHHHHHhhhhhheeccCCchHHHHHHHHHHHHh
Q 000319 85 RITAPEAP-----YSDDVLKLIVGTFSGLKDTGGPSFGRR-----VVILETLAKYRSCVVMLDLECDELVNEMYSTFFAV 154 (1674)
Q Consensus 85 RI~APdAP-----ytdd~lkli~~~f~~L~d~~~p~f~q~-----~~lLesLA~vks~vlm~DL~~~~Li~~lF~~ff~i 154 (1674)
++ -|+-| ++|..+..|...|..+-+..+|.+.|. ..+...++.-+..++++- ++. .-|..|+.
T Consensus 799 ~l-e~~~~~~~~~~n~~~~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~----eI~-~aF~~~Ls- 871 (1702)
T KOG0915|consen 799 FL-EEKTDTEEDKVNDTRETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLK----EIQ-EAFSHLLS- 871 (1702)
T ss_pred hc-ccccchhhcccCCccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccH----HHH-HHHHHHhc-
Confidence 66 23333 223456678888777766678877765 234455566666666543 444 56666654
Q ss_pred hcCCChhhHHHHHHHHHHHHhcc-c-ccccHHHHHHHHHhhcCC--------------------CcH--HHHHHHHHHHH
Q 000319 155 ASDDHPESVLSSMQTIMIVLLEE-S-EDIQEDLLVILLSALGRN--------------------KND--TARRLAMNVIE 210 (1674)
Q Consensus 155 v~~~~~~~V~~~m~~IL~~vI~E-s-e~vp~~lLd~IL~~l~~~--------------------~~~--~a~~lA~~v~~ 210 (1674)
-++++.+.|.+- =|. ++-| + ...-.++++-++..|... ++. ..-.-=+++|+
T Consensus 872 d~dEf~QDvAsr---Glg-lVYelgd~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~ 947 (1702)
T KOG0915|consen 872 DNDEFSQDVASR---GLG-LVYELGDSSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCN 947 (1702)
T ss_pred ccHHHHHHHHhc---Cce-EEEecCCchhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHH
Confidence 222233222211 111 1222 1 134455555555554211 111 11223368888
Q ss_pred HhhhhhhHHHH-HHHHHhhcC------C-CC-C------CC--Ccch--HHHHHHHHHhhcchhhhhhhhcccccccCCC
Q 000319 211 QCAGKLEAGIK-QFLVSSMSG------D-SR-P------GH--SHID--YHEVIYDVYRCSPQILSGVVPYLTGELLTDQ 271 (1674)
Q Consensus 211 ~~~dkL~~~I~-q~f~~~l~~------d-~~-~------~~--~~~~--~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed 271 (1674)
-.+|-=||.+- +|+ +.... . +. . .+ ..+. +-.||-.|||+-- ..+
T Consensus 948 LASdl~qPdLVYKFM-~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~y---------------DP~ 1011 (1702)
T KOG0915|consen 948 LASDLGQPDLVYKFM-QLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQY---------------DPD 1011 (1702)
T ss_pred HHhhcCChHHHHHHH-HHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhcc---------------CCc
Confidence 88888888764 444 22211 0 00 0 00 1111 2356666665522 356
Q ss_pred hHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCC---CChHHHHHHHHhhhC
Q 000319 272 LDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR---ADAPQILTALCDRLL 348 (1674)
Q Consensus 272 ~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~---~~~~eIi~~L~~rL~ 348 (1674)
..++-.-|..-+-++.++......-+.+++.+.|.-..++.=.||.+++-+..++|..+|.. +...+++.++-+-.=
T Consensus 1012 ~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmD 1091 (1702)
T KOG0915|consen 1012 KKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMD 1091 (1702)
T ss_pred HHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777654445566899999999999999999999999999999988742 334577788887888
Q ss_pred CChhHHHHHHHHHHHHhhhhhcC------CC-CHHHHHHH-----HHhhccCChhHHHHHHHHHHHHHHHH
Q 000319 349 DFDENVRKQVVAVICDVACHALN------SI-PVETVKLV-----AERLRDKSVLVKRYTMERLADIFRGC 407 (1674)
Q Consensus 349 D~DEkVR~aaV~ai~~la~~~l~------~V-~~elL~~L-----aeR~RDKK~~VRkeAm~~La~LY~~~ 407 (1674)
|-.|.||.|+=++...++.-... .. ..+++..+ .+-+--|-..||+-+|.+|.+|-+.+
T Consensus 1092 DIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kss 1162 (1702)
T KOG0915|consen 1092 DIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSS 1162 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhc
Confidence 99999999876665554432211 11 12334322 33344556799999999999998876
No 58
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.71 E-value=44 Score=44.10 Aligned_cols=53 Identities=19% Similarity=0.319 Sum_probs=43.5
Q ss_pred chHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHhh
Q 000319 140 CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSAL 193 (1674)
Q Consensus 140 ~~~Li~~lF~~ff~iv~~~~~~~V~~~m~~IL~~vI~Ese~vp~~lLd~IL~~l 193 (1674)
-+||+..+|.+++... .....+|..-.+.|+..+.++--.|+.+|-+.|...+
T Consensus 79 e~DlV~~~f~hlLRg~-Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l 131 (892)
T KOG2025|consen 79 EEDLVAGTFYHLLRGT-ESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKL 131 (892)
T ss_pred hhhHHHHHHHHHHhcc-cCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHH
Confidence 4679999998887643 4556789999999999999998899999988777554
No 59
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.67 E-value=3.3 Score=53.33 Aligned_cols=107 Identities=19% Similarity=0.262 Sum_probs=80.1
Q ss_pred HHHHHhhhcCCChhHHHHHHHHhHHHHhcC---CCC-----CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCC
Q 000319 301 FSEFLKRLTDRIVAVRMSVLEHVKSCLLTD---PSR-----ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS 372 (1674)
Q Consensus 301 w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~---p~~-----~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~ 372 (1674)
+..|..=..--+-..|..+++.|++++..- |.. ....+++.-|.+||.|+-.-+|..|++++..+--.....
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 334444445567789999999999987642 111 123578899999999999999999888875543322222
Q ss_pred C--CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHH
Q 000319 373 I--PVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 407 (1674)
Q Consensus 373 V--~~elL~~LaeR~RDKK~~VRkeAm~~La~LY~~~ 407 (1674)
+ -.++.+.++.|+-||..-||+.||..+++|.-.+
T Consensus 381 ~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~H 417 (1128)
T COG5098 381 VGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRH 417 (1128)
T ss_pred cchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcC
Confidence 2 3468899999999999999999999999987654
No 60
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=92.63 E-value=14 Score=49.58 Aligned_cols=103 Identities=17% Similarity=0.129 Sum_probs=87.0
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHH-HH
Q 000319 300 VFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE-TV 378 (1674)
Q Consensus 300 ~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~e-lL 378 (1674)
.-+.|++=+.|.++.||...+.....+ ........++..+.+++.|+..-||..|+-+|..+-.-+.+.++.. ..
T Consensus 93 avNti~kDl~d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~ 168 (757)
T COG5096 93 AVNTIQKDLQDPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLI 168 (757)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHH
Confidence 457888899999999999999887642 1223456788999999999999999999999988776777777777 77
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000319 379 KLVAERLRDKSVLVKRYTMERLADIFRG 406 (1674)
Q Consensus 379 ~~LaeR~RDKK~~VRkeAm~~La~LY~~ 406 (1674)
..+.+.+.|-.+.|=..|+.+|..++..
T Consensus 169 ~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 169 DILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 7788999999999999999999999987
No 61
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=92.00 E-value=9.7 Score=48.55 Aligned_cols=157 Identities=14% Similarity=0.118 Sum_probs=106.6
Q ss_pred HHHHHHHHHhhcchhhhhhhhcccccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHH
Q 000319 241 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVL 320 (1674)
Q Consensus 241 ~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~v 320 (1674)
+..|+|++-|..--.++..+..+-..+...|-.--..-++.+..++-. .+++..+..+..+.||+- +-..|-++..
T Consensus 210 alGlLyq~kr~dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~-n~q~~~q~rpfL~~wls~---k~emV~lE~A 285 (898)
T COG5240 210 ALGLLYQSKRTDKMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKE-NSQALLQLRPFLNSWLSD---KFEMVFLEAA 285 (898)
T ss_pred HHHHHHHHhcccHHHHHHHHHHhhcccccccchhheehHHHHHHHHHh-ChHHHHHHHHHHHHHhcC---cchhhhHHHH
Confidence 447899999988777777776666666544444444555555666654 457788888889999875 3344555444
Q ss_pred HHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHH
Q 000319 321 EHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERL 400 (1674)
Q Consensus 321 e~~~~iL~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VRkeAm~~L 400 (1674)
..+-.+-..|-......+.+..|+-.|.-+.---|.+|...+.++|...++.|..-- ..+-..+-|-+..|-.+||++|
T Consensus 286 r~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN-~evEsLIsd~Nr~IstyAITtL 364 (898)
T COG5240 286 RAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCN-KEVESLISDENRTISTYAITTL 364 (898)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecC-hhHHHHhhcccccchHHHHHHH
Confidence 444332233322234457788999999999999999999999999998887765421 1234556777888888888877
Q ss_pred HH
Q 000319 401 AD 402 (1674)
Q Consensus 401 a~ 402 (1674)
-+
T Consensus 365 LK 366 (898)
T COG5240 365 LK 366 (898)
T ss_pred HH
Confidence 54
No 62
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.92 E-value=8 Score=51.12 Aligned_cols=235 Identities=18% Similarity=0.235 Sum_probs=132.5
Q ss_pred hhhcCCCcchHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHhc-CCCCCCCCChhhHHHHHHHHHhhhhhheeccCCch
Q 000319 63 VLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKLIVGTFS-GLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECD 141 (1674)
Q Consensus 63 ~LL~HkD~~Vr~~vAcCLadIlRI~APdAPytdd~lkli~~~f~-~L~d~~~p~f~q~~~lLesLA~vks~vlm~DL~~~ 141 (1674)
.||+|.|.-||==++.|..-+.|.- .+.+..|+-.|. .|.+.+.+-..--++++. -||....+
T Consensus 149 ~Ll~~~~~~irKKA~Lca~r~irK~-------P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~---------e~c~~~~~ 212 (866)
T KOG1062|consen 149 RLLQHRDPYIRKKAALCAVRFIRKV-------PDLVEHFVIAFRKLLCEKHHGVLIAGLHLIT---------ELCKISPD 212 (866)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHcC-------chHHHHhhHHHHHHHhhcCCceeeeHHHHHH---------HHHhcCHH
Confidence 5677777778877788877777774 455555555554 334333322222222222 12221100
Q ss_pred HHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhccc-------ccccHHHHHH-HH---HhhcCCCcHHHHHHHHHHHH
Q 000319 142 ELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEES-------EDIQEDLLVI-LL---SALGRNKNDTARRLAMNVIE 210 (1674)
Q Consensus 142 ~Li~~lF~~ff~iv~~~~~~~V~~~m~~IL~~vI~Es-------e~vp~~lLd~-IL---~~l~~~~~~~a~~lA~~v~~ 210 (1674)
... +-+++...+..||..++.-. ..||...|.+ || ..++++..
T Consensus 213 -----~l~---------~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~------------ 266 (866)
T KOG1062|consen 213 -----ALS---------YFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDA------------ 266 (866)
T ss_pred -----HHH---------HHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCc------------
Confidence 011 11123344555666655541 2477777663 22 23344422
Q ss_pred HhhhhhhHHHHHHHHHhhcCCCCCCCCcc-hHHHHHHHHHhhcchhhhhhhhcccccccCCChHHHHHHHHHHHHhhcCC
Q 000319 211 QCAGKLEAGIKQFLVSSMSGDSRPGHSHI-DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP 289 (1674)
Q Consensus 211 ~~~dkL~~~I~q~f~~~l~~d~~~~~~~~-~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~ 289 (1674)
.++|.|.--+.|-++..=. ..+.+. =+|+-+..|+-+- .+..+|.+|+..||+-+..+
T Consensus 267 daSd~M~DiLaqvatntds----skN~GnAILYE~V~TI~~I~-----------------~~~~LrvlainiLgkFL~n~ 325 (866)
T KOG1062|consen 267 DASDLMNDILAQVATNTDS----SKNAGNAILYECVRTIMDIR-----------------SNSGLRVLAINILGKFLLNR 325 (866)
T ss_pred cHHHHHHHHHHHHHhcccc----cccchhHHHHHHHHHHHhcc-----------------CCchHHHHHHHHHHHHhcCC
Confidence 2234455555555543211 111111 1355555444442 34567777777777777665
Q ss_pred CC------------------CchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCCh
Q 000319 290 GS------------------ANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFD 351 (1674)
Q Consensus 290 ~~------------------~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~~~eIi~~L~~rL~D~D 351 (1674)
+- +.+++|+.+--+ ...|.++.||...+|..-.++..+- ...+++.|.+-|.-.|
T Consensus 326 d~NirYvaLn~L~r~V~~d~~avqrHr~tIle---CL~DpD~SIkrralELs~~lvn~~N----v~~mv~eLl~fL~~~d 398 (866)
T KOG1062|consen 326 DNNIRYVALNMLLRVVQQDPTAVQRHRSTILE---CLKDPDVSIKRRALELSYALVNESN----VRVMVKELLEFLESSD 398 (866)
T ss_pred ccceeeeehhhHHhhhcCCcHHHHHHHHHHHH---HhcCCcHHHHHHHHHHHHHHhcccc----HHHHHHHHHHHHHhcc
Confidence 42 457888887654 5679999999999999877655432 4567777777777779
Q ss_pred hHHHHHHHHHHHHhhh
Q 000319 352 ENVRKQVVAVICDVAC 367 (1674)
Q Consensus 352 EkVR~aaV~ai~~la~ 367 (1674)
+.+|...+..|+.+|-
T Consensus 399 ~~~k~~~as~I~~laE 414 (866)
T KOG1062|consen 399 EDFKADIASKIAELAE 414 (866)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999998888887664
No 63
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=91.53 E-value=0.26 Score=38.97 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=22.9
Q ss_pred HHHHHHhhhCCChhHHHHHHHHHHHHhhh
Q 000319 339 ILTALCDRLLDFDENVRKQVVAVICDVAC 367 (1674)
Q Consensus 339 Ii~~L~~rL~D~DEkVR~aaV~ai~~la~ 367 (1674)
|++.|...+.|++++||.+|+.+++.++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 46778888889999999999988888764
No 64
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=90.85 E-value=11 Score=45.25 Aligned_cols=106 Identities=19% Similarity=0.243 Sum_probs=75.9
Q ss_pred HHHHHHHh-hhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh-cC---CC
Q 000319 299 SVFSEFLK-RLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-LN---SI 373 (1674)
Q Consensus 299 ~~w~~fL~-R~~D~s~~VR~~~ve~~~~iL~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~-l~---~V 373 (1674)
+++..++- -..=.++.||..-+++.+-+-+-+. ..+.+-+.-+...+..-++.||..|+++++|+.... +. .-
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~--~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~ 103 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK--ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSE 103 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccch
Confidence 66777662 2333467999999999987555443 345565555665554449999999999999998632 22 22
Q ss_pred C--------HHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000319 374 P--------VETVKLVAERLRDKSVLVKRYTMERLADIFRG 406 (1674)
Q Consensus 374 ~--------~elL~~LaeR~RDKK~~VRkeAm~~La~LY~~ 406 (1674)
+ ..+++.+..-+.+-...||..|.+++++|+-.
T Consensus 104 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 104 SDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred hccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 2 24667777777777889999999999998874
No 65
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.72 E-value=5.7 Score=52.24 Aligned_cols=258 Identities=19% Similarity=0.175 Sum_probs=144.6
Q ss_pred hhhcCCCcchHHHHHHHHHHH----hhhcCCCCCCChhHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHhh-hhhheecc
Q 000319 63 VLLKHQDKDVKLLVATCICEI----TRITAPEAPYSDDVLKLIVGTFSGLKDTGGPSFGRRVVILETLAKY-RSCVVMLD 137 (1674)
Q Consensus 63 ~LL~HkD~~Vr~~vAcCLadI----lRI~APdAPytdd~lkli~~~f~~L~d~~~p~f~q~~~lLesLA~v-ks~vlm~D 137 (1674)
..|.||..-|-.=+|--++.+ -|+.+| ...+|+.|++.- ....--.++-+|-.+|-. -.-|.+|.
T Consensus 252 s~l~~K~emV~~EaArai~~l~~~~~r~l~p----avs~Lq~flssp------~~~lRfaAvRtLnkvAm~~P~~v~~cN 321 (865)
T KOG1078|consen 252 SCLRHKSEMVIYEAARAIVSLPNTNSRELAP----AVSVLQLFLSSP------KVALRFAAVRTLNKVAMKHPQAVTVCN 321 (865)
T ss_pred HHHhchhHHHHHHHHHHHhhccccCHhhcch----HHHHHHHHhcCc------HHHHHHHHHHHHHHHHHhCCccccccc
Confidence 455666666655555444433 244444 455666554321 111112233444444422 22344555
Q ss_pred CCchHHHHHH--------HHHHHHhhcCCChhhHHHHHHHHHHHHh---cccccccHHHHHHHHHhhcCCCcHHHHHHHH
Q 000319 138 LECDELVNEM--------YSTFFAVASDDHPESVLSSMQTIMIVLL---EESEDIQEDLLVILLSALGRNKNDTARRLAM 206 (1674)
Q Consensus 138 L~~~~Li~~l--------F~~ff~iv~~~~~~~V~~~m~~IL~~vI---~Ese~vp~~lLd~IL~~l~~~~~~~a~~lA~ 206 (1674)
++-+.||... ..+++.. +...+|...|-.|-+.+= +|.--|--+-+..+...+
T Consensus 322 ~elE~lItd~NrsIat~AITtLLKT---G~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~f------------- 385 (865)
T KOG1078|consen 322 LDLESLITDSNRSIATLAITTLLKT---GTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKF------------- 385 (865)
T ss_pred hhHHhhhcccccchhHHHHHHHHHh---cchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhc-------------
Confidence 5544444332 2233332 335566666665554443 333333333333333333
Q ss_pred HHHHHhhhhhhHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhcchhhhhhhhcccccccCCChHHHHHHHHHHHHhh
Q 000319 207 NVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLF 286 (1674)
Q Consensus 207 ~v~~~~~dkL~~~I~q~f~~~l~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mf 286 (1674)
.+....+-.|+.+++.+++.. +-.....+.|..+-+..|+.=-.-+-.|..-. +|=+.+..||+.|+.+-
T Consensus 386 -------p~k~~~~m~FL~~~Lr~eGg~-e~K~aivd~Ii~iie~~pdsKe~~L~~LCefI--EDce~~~i~~rILhlLG 455 (865)
T KOG1078|consen 386 -------PRKHTVMMNFLSNMLREEGGF-EFKRAIVDAIIDIIEENPDSKERGLEHLCEFI--EDCEFTQIAVRILHLLG 455 (865)
T ss_pred -------cHHHHHHHHHHHHHHHhccCc-hHHHHHHHHHHHHHHhCcchhhHHHHHHHHHH--HhccchHHHHHHHHHHh
Confidence 233445566777777654321 11223567788888888875444333333322 45677889999998665
Q ss_pred cCCCCCchhhcHHHHHHH-HhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHH
Q 000319 287 AVPGSANNEQFHSVFSEF-LKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAV 361 (1674)
Q Consensus 287 s~~~~~~a~~y~~~w~~f-L~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~a 361 (1674)
-. | -....|+-|-.| .+|..=-+..||.+.|.++..|....+.. .+-|...|..+++|.|+.||-.|--.
T Consensus 456 ~E-g--P~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l--~~sI~vllkRc~~D~DdevRdrAtf~ 526 (865)
T KOG1078|consen 456 KE-G--PKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVL--LPSILVLLKRCLNDSDDEVRDRATFY 526 (865)
T ss_pred cc-C--CCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCc--cccHHHHHHHHhcCchHHHHHHHHHH
Confidence 43 2 123455555544 46777778999999999999999666543 34788999999999999999885333
No 66
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=90.49 E-value=9.9 Score=50.84 Aligned_cols=177 Identities=20% Similarity=0.198 Sum_probs=99.3
Q ss_pred cccHHHHHHHHhhccccchHHHHHHHHHhhcchhhhhh-cccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchH
Q 000319 640 GGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLA-ATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSL 718 (1674)
Q Consensus 640 k~~v~~Li~lL~~~~~~~~~~aLkiLak~~k~i~e~~~-~~~s~l~~~L~~lal~Gtp~qAKyAvr~Laa~~~~~~~~~~ 718 (1674)
++.+.-|+++|..++....-.++..|.+.+-+ .++-. -....+.+.|.++--.++...-.-|.++|..++.+.+....
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~ 367 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQ 367 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 45567899999877665555566677676632 22211 12446788898988888888888999999988877643210
Q ss_pred ---HHHHHHHHHhhhhcCCCchHHHHHHHHHhhc--ccccccchHHHHHHHHHhhhcccCccCCCCCCCC-------CCc
Q 000319 719 ---SVLYKRLVDMLEEKTHLPAVLQSLGCIAQTA--MPVFETRESEIEEFIKSKILRCSNKIRNDTKACW-------DDR 786 (1674)
Q Consensus 719 ---~~L~~~L~~~L~~~~~l~t~L~sL~~Iaq~a--p~vfe~~~~eI~~fIik~IL~~~~~~~~~~~~~W-------~d~ 786 (1674)
.-++..|+..|.........+..|..|+... ...|.. ++.+.+|++-++..+....+ ...-| ...
T Consensus 368 mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~--TdcIp~L~~~Ll~~~~~~v~-~eliaL~iNLa~~~r 444 (708)
T PF05804_consen 368 MVSLGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAY--TDCIPQLMQMLLENSEEEVQ-LELIALLINLALNKR 444 (708)
T ss_pred HHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhh--cchHHHHHHHHHhCCCcccc-HHHHHHHHHHhcCHH
Confidence 1134555555653322223455555555542 344432 24567777776654332111 11111 000
Q ss_pred hhhHHHHHHHHHHHHHhhcCCCccccccchHHHHHHHHHhh
Q 000319 787 SELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSML 827 (1674)
Q Consensus 787 se~~~aKi~aLK~Lvn~ll~~~~~~~~~~i~~ll~lL~~il 827 (1674)
.....+..-+|+.|+.+.....+ ..+++++++|-
T Consensus 445 naqlm~~g~gL~~L~~ra~~~~D-------~lLlKlIRNiS 478 (708)
T PF05804_consen 445 NAQLMCEGNGLQSLMKRALKTRD-------PLLLKLIRNIS 478 (708)
T ss_pred HHHHHHhcCcHHHHHHHHHhccc-------HHHHHHHHHHH
Confidence 11111234557777777655443 45788988874
No 67
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=90.39 E-value=0.17 Score=44.84 Aligned_cols=52 Identities=23% Similarity=0.206 Sum_probs=34.3
Q ss_pred hhHHHHHHHHhHHHHhcCCC--CCChHHHHHHHHhhhCCChhHHHHHHHHHHHH
Q 000319 313 VAVRMSVLEHVKSCLLTDPS--RADAPQILTALCDRLLDFDENVRKQVVAVICD 364 (1674)
Q Consensus 313 ~~VR~~~ve~~~~iL~s~p~--~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~ 364 (1674)
+.||...+...+.+....+. .....+++..|...|.|+++.||.+|+.+++.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 46777777777763333221 11234777888888888888888888777754
No 68
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=90.15 E-value=0.49 Score=47.22 Aligned_cols=100 Identities=14% Similarity=0.102 Sum_probs=72.4
Q ss_pred HHhhhcCCChhHHHHHHHHhHHHHhcCCCC---CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcC----CCCHH
Q 000319 304 FLKRLTDRIVAVRMSVLEHVKSCLLTDPSR---ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN----SIPVE 376 (1674)
Q Consensus 304 fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~---~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~----~V~~e 376 (1674)
++.-..|.++.+|...+.+...+-...|.. -....+++.|...|.|.|.+||..++.+++.++..... .+...
T Consensus 12 l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 91 (120)
T cd00020 12 LVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAG 91 (120)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCC
Confidence 333444556788888888877755543321 00125678888899999999999999999999764321 12233
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHH
Q 000319 377 TVKLVAERLRDKSVLVKRYTMERLADI 403 (1674)
Q Consensus 377 lL~~LaeR~RDKK~~VRkeAm~~La~L 403 (1674)
++..+.+.+.+....||+.|+..|+.|
T Consensus 92 ~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 92 GVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 677889999999999999999999876
No 69
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=90.04 E-value=3.5 Score=54.21 Aligned_cols=128 Identities=17% Similarity=0.262 Sum_probs=77.9
Q ss_pred cchhhhhhhhccccccc----CCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhc---CCChhHHHHHHHHhH
Q 000319 252 SPQILSGVVPYLTGELL----TDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLT---DRIVAVRMSVLEHVK 324 (1674)
Q Consensus 252 ~P~lL~~ViP~Le~EL~----sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~---D~s~~VR~~~ve~~~ 324 (1674)
.+.+..-+++.|..+|. ..+...++.+.+.||.| +. |.+...++.-.. +.+..||++++.+..
T Consensus 480 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~-g~---------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr 549 (618)
T PF01347_consen 480 SRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL-GH---------PESIPVLLPYIEGKEEVPHFIRVAAIQALR 549 (618)
T ss_dssp -SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTT
T ss_pred chhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc-CC---------chhhHHHHhHhhhccccchHHHHHHHHHHH
Confidence 45666667777777776 45779999999999987 22 233444444343 559999999999988
Q ss_pred HHHhcCCCCCChHHHHHHHHhhhCCChh--HHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhh-ccCChhHHHHHHHHH
Q 000319 325 SCLLTDPSRADAPQILTALCDRLLDFDE--NVRKQVVAVICDVACHALNSIPVETVKLVAERL-RDKSVLVKRYTMERL 400 (1674)
Q Consensus 325 ~iL~s~p~~~~~~eIi~~L~~rL~D~DE--kVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~-RDKK~~VRkeAm~~L 400 (1674)
.+....| ..+.+.|..-+.|..+ .||.||+-++-. ..-+..+|..++..+ .|+...|+......|
T Consensus 550 ~~~~~~~-----~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~------~~P~~~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 550 RLAKHCP-----EKVREILLPIFMNTTEDPEVRIAAYLILMR------CNPSPSVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp TGGGT-H-----HHHHHHHHHHHH-TTS-HHHHHHHHHHHHH------T---HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred HHhhcCc-----HHHHHHHHHHhcCCCCChhHHHHHHHHHHh------cCCCHHHHHHHHHHHhhCchHHHHHHHHHhc
Confidence 7644443 2556666666666544 399997666522 113556788888877 778788887665543
No 70
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=90.02 E-value=12 Score=48.37 Aligned_cols=214 Identities=17% Similarity=0.199 Sum_probs=123.9
Q ss_pred cCCchHHHHHHHHHHH--HhhcC----CChhhHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Q 000319 137 DLECDELVNEMYSTFF--AVASD----DHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARRLAMNVIE 210 (1674)
Q Consensus 137 DL~~~~Li~~lF~~ff--~iv~~----~~~~~V~~~m~~IL~~vI~Ese~vp~~lLd~IL~~l~~~~~~~a~~lA~~v~~ 210 (1674)
+++..++|..||..|+ .+... --+..+..-+..+|.--+..+ ..++.++.+++..+....+
T Consensus 267 ~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa-~~~~~~~~i~~~~l~~~~~------------ 333 (501)
T PF13001_consen 267 SLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAA-TSFPNILQIVFDGLYSDNT------------ 333 (501)
T ss_pred CCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHH-hCCccHHHHHhccccCCcc------------
Confidence 3566788888998888 32111 123445544555554433322 3556667777665532211
Q ss_pred HhhhhhhHHHHHHH---HHhhcCCCCCCCCcchHHHHHHHHHhhcchhhhhhhhccc----ccccCCChHHHHHHHHHHH
Q 000319 211 QCAGKLEAGIKQFL---VSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLT----GELLTDQLDTRLKAVGLVG 283 (1674)
Q Consensus 211 ~~~dkL~~~I~q~f---~~~l~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le----~EL~sed~~~Rl~At~llG 283 (1674)
..+++..-.+|+ ..++. |-=...+-.+.|.++...+|.++ ....+++...|..|=++||
T Consensus 334 --~~klk~~~l~F~~~~~~~~~------------~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG 399 (501)
T PF13001_consen 334 --NSKLKSLALQFIRGSSWIFK------------HISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLG 399 (501)
T ss_pred --ccccchhcchhhhcchHHhh------------hcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHH
Confidence 122222222333 11110 00011223566777777888884 3466789999999999999
Q ss_pred HhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCC-----hHHHHH-HHHhhhCCChhHHHHH
Q 000319 284 DLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRAD-----APQILT-ALCDRLLDFDENVRKQ 357 (1674)
Q Consensus 284 ~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~-----~~eIi~-~L~~rL~D~DEkVR~a 357 (1674)
.+..... .+....-++..-+.....+-.++||..+-++...++.+-+.... ...... .+.....+..-.+|.+
T Consensus 400 ~L~~~~p-~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~ 478 (501)
T PF13001_consen 400 LLAKRAP-SLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYA 478 (501)
T ss_pred HHHccCc-ccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHH
Confidence 9887644 33434455556666777888999999999998887765432111 111122 2223345667779999
Q ss_pred HHHHHHHhhhhhcCCCCHHHHHH
Q 000319 358 VVAVICDVACHALNSIPVETVKL 380 (1674)
Q Consensus 358 aV~ai~~la~~~l~~V~~elL~~ 380 (1674)
||+-.. +|..+++++...+..
T Consensus 479 avk~an--~~fpf~d~~aR~i~i 499 (501)
T PF13001_consen 479 AVKYAN--ACFPFSDVPARYICI 499 (501)
T ss_pred HHHHHH--HhCCccchHHHHHHh
Confidence 888763 467777777665543
No 71
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=89.81 E-value=2.4 Score=42.45 Aligned_cols=87 Identities=21% Similarity=0.256 Sum_probs=70.5
Q ss_pred HHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCC-CCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHH
Q 000319 298 HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDP-SRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE 376 (1674)
Q Consensus 298 ~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p-~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~e 376 (1674)
..+|+.++.-.+|..++||..-+....+.+.++. .......|+..+..-|.|+|.=|=+.||++++.++...+ .+
T Consensus 2 ~~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p----~~ 77 (92)
T PF10363_consen 2 RETLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP----DE 77 (92)
T ss_pred hHHHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh----HH
Confidence 3678999999999999999999999999888765 334456788899999999999999999999999887653 34
Q ss_pred HHHHHHHhhccC
Q 000319 377 TVKLVAERLRDK 388 (1674)
Q Consensus 377 lL~~LaeR~RDK 388 (1674)
++..|.++-.|+
T Consensus 78 vl~~L~~~y~~~ 89 (92)
T PF10363_consen 78 VLPILLDEYADP 89 (92)
T ss_pred HHHHHHHHHhCc
Confidence 565555555444
No 72
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=89.73 E-value=74 Score=41.14 Aligned_cols=51 Identities=29% Similarity=0.327 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccccchHHHHHHHHHhhc
Q 000319 620 FMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGG 670 (1674)
Q Consensus 620 ~~~~a~eLL~~IS~~~P~lFk~~v~~Li~lL~~~~~~~~~~aLkiLak~~k 670 (1674)
..-+|+++|+.+|..+|+.-..|-.++-.++.+.|-.+..-++-+|-+.|.
T Consensus 319 ~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt 369 (898)
T COG5240 319 LRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGT 369 (898)
T ss_pred HHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCc
Confidence 345789999999999999998887888888888887666667777767663
No 73
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=89.24 E-value=0.67 Score=54.77 Aligned_cols=50 Identities=22% Similarity=0.308 Sum_probs=40.8
Q ss_pred CcccccceEEEecCCCCceEEEEEEeecCCCCeeEEEcc-CCcceeeeccc
Q 000319 1372 IEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYD-DEDVEVLRLDK 1421 (1674)
Q Consensus 1372 ~~~lvG~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~Yd-Dgd~E~l~L~~ 1421 (1674)
-..=||-+|.-.|-.|..||.++|++.+...+.-.|+|. -|..|.+.|..
T Consensus 67 ~~WkvGd~C~A~~s~Dg~~Y~A~I~~i~~~~~~~~V~f~gYgn~e~v~l~d 117 (264)
T PF06003_consen 67 KKWKVGDKCMAVYSEDGQYYPATIESIDEEDGTCVVVFTGYGNEEEVNLSD 117 (264)
T ss_dssp T---TT-EEEEE-TTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGG
T ss_pred cCCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEcccCCeEeeehhh
Confidence 345699999999999999999999999999999999994 58888888864
No 74
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.04 E-value=0.66 Score=59.32 Aligned_cols=97 Identities=26% Similarity=0.291 Sum_probs=84.5
Q ss_pred HHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHH
Q 000319 302 SEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLV 381 (1674)
Q Consensus 302 ~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~L 381 (1674)
-+|+--+.|-=-+||.+.|.....+-.++|.. +..-+..|.+.++|-.+-||+.++.++.-++.+ -.+..+.|..+
T Consensus 376 GA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F--A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~--l~i~eeql~~i 451 (823)
T KOG2259|consen 376 GALVHGLEDEFYEVRRAAVASLCSLATSSPGF--AVRALDFLVDMFNDEIEVVRLKAIFALTMISVH--LAIREEQLRQI 451 (823)
T ss_pred ceeeeechHHHHHHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH--heecHHHHHHH
Confidence 56777778888899999999999988888976 457889999999999999999999999888877 56788999999
Q ss_pred HHhhccCChhHHHHHHHHHHH
Q 000319 382 AERLRDKSVLVKRYTMERLAD 402 (1674)
Q Consensus 382 aeR~RDKK~~VRkeAm~~La~ 402 (1674)
.+-+.|..+.||...-+.|+.
T Consensus 452 l~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 452 LESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHHHhcCHHHHHHHHHHHHh
Confidence 999999999999987777654
No 75
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.69 E-value=29 Score=47.87 Aligned_cols=257 Identities=16% Similarity=0.149 Sum_probs=151.1
Q ss_pred CCchHHHHHHHHHHHHhhcCCC--------hhhHHHHHHHHHHHHhccccc----ccHHHHHHHHHhhc---CC------
Q 000319 138 LECDELVNEMYSTFFAVASDDH--------PESVLSSMQTIMIVLLEESED----IQEDLLVILLSALG---RN------ 196 (1674)
Q Consensus 138 L~~~~Li~~lF~~ff~iv~~~~--------~~~V~~~m~~IL~~vI~Ese~----vp~~lLd~IL~~l~---~~------ 196 (1674)
.+..+.+..|-+.|+.-.+++. -+++...|...+..+|..+.. ...-+.|-+++-|. ..
T Consensus 138 ~ds~~i~~~~~e~~~e~es~DYpl~~~g~~~k~fr~~~~~fl~~lV~q~q~~s~l~d~~lmd~~is~LtamSdSqvR~fR 217 (1048)
T KOG2011|consen 138 VDSSSITLSMTELFDERESGDYPLTSKGPEWKNFRENFCEFLPTLVSQCQYGSCLFDSFLMDDLISWLTAMSDSQVRAFR 217 (1048)
T ss_pred ccchHHHHHHHHHHhhhhhccCcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHhccccHHHHH
Confidence 4467889999999888444332 257899999999999998755 33344444444431 11
Q ss_pred --CcHHHHHHHHHHHHHhhhhhh-HHHHHHHHHhhcCCCCCCCCc-c--------hHHHHHHHHHhhcchhhhhhhhccc
Q 000319 197 --KNDTARRLAMNVIEQCAGKLE-AGIKQFLVSSMSGDSRPGHSH-I--------DYHEVIYDVYRCSPQILSGVVPYLT 264 (1674)
Q Consensus 197 --~~~~a~~lA~~v~~~~~dkL~-~~I~q~f~~~l~~d~~~~~~~-~--------~~h~Li~eL~~~~P~lL~~ViP~Le 264 (1674)
.+.+|+++...+|.....-.+ ....+=-.+.=...+. .+.. + ..++-+-+|-.+.-.+.-+|. -
T Consensus 218 hTaTl~~mklmt~Lv~va~~Ls~~~~~tskQleaEr~k~r-~~rarle~Ll~~r~etqe~~d~i~~mi~~if~sVF---V 293 (1048)
T KOG2011|consen 218 HTATLAAMKLMTALVSVALNLSSHNDKTSKQLEAERNKSR-GNRARLESLLMLRKETQEQQDEIESMINDIFDSVF---V 293 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhee---e
Confidence 112566666666655433222 1111000000000000 0110 0 122223333323223333322 2
Q ss_pred ccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHH--HHHhh----hcCCChhHHHHHHHHhHHHHhcCCCCCChHH
Q 000319 265 GELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFS--EFLKR----LTDRIVAVRMSVLEHVKSCLLTDPSRADAPQ 338 (1674)
Q Consensus 265 ~EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~--~fL~R----~~D~s~~VR~~~ve~~~~iL~s~p~~~~~~e 338 (1674)
+--+--++.+|...++-||-- +..||+.|- .||+= .+|+...||..||+.+..+..+.-...-...
T Consensus 294 HRYRDV~~~IRaiCiqeLgiW--------i~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~l 365 (1048)
T KOG2011|consen 294 HRYRDVDPDIRAICIQELGIW--------IKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLEL 365 (1048)
T ss_pred eecccCchHHHHHHHHHHHHH--------HHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHH
Confidence 333456789999999999954 466777665 45543 5899999999999999998776322222234
Q ss_pred HHHHHHhh-----hCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHH-HHHHHh
Q 000319 339 ILTALCDR-----LLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLAD-IFRGCC 408 (1674)
Q Consensus 339 Ii~~L~~r-----L~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VRkeAm~~La~-LY~~~~ 408 (1674)
..+-+..| ..|.+.-||....... +.......++.+-+..|...|=|-++.||+.|+..|-. ++..++
T Consensus 366 FtsRFK~RIVeMadrd~~~~Vrav~L~~~--~~~~~~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~~~~~a 439 (1048)
T KOG2011|consen 366 FTSRFKDRIVEMADRDRNVSVRAVGLVLC--LLLSSSGLLSDKDILIVYSLIYDSNRRVAVAAGEFLYKKLFERVA 439 (1048)
T ss_pred HHHHHHHHHHHHHhhhcchhHHHHHHHHH--HHHhcccccChhHHHHHHHHHhccCcchHHHHHHHHHHHhhcccc
Confidence 45555554 4677777877644432 33455667888888899999999999999999988754 444443
No 76
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=88.44 E-value=1 Score=45.45 Aligned_cols=84 Identities=21% Similarity=0.205 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCC--CChHHHHHHHHhhhCCChh
Q 000319 275 RLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR--ADAPQILTALCDRLLDFDE 352 (1674)
Q Consensus 275 Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~--~~~~eIi~~L~~rL~D~DE 352 (1674)
|..+.-.|+.+--+-+..+....+.+-.--|.-|.|.++.||....++..+|....... .-..+|..+|.+.+.|+|+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~ 82 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDE 82 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 44455555544322233456666788888899999999999999999999988754321 1135889999999999999
Q ss_pred HHHHHH
Q 000319 353 NVRKQV 358 (1674)
Q Consensus 353 kVR~aa 358 (1674)
.||.+|
T Consensus 83 ~Vr~~a 88 (97)
T PF12755_consen 83 NVRSAA 88 (97)
T ss_pred hHHHHH
Confidence 999985
No 77
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.42 E-value=2.6 Score=54.28 Aligned_cols=113 Identities=16% Similarity=0.134 Sum_probs=84.3
Q ss_pred CchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcC
Q 000319 292 ANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN 371 (1674)
Q Consensus 292 ~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~ 371 (1674)
.+...-..+|.....=++|.++.||...++..-. | .+ ..-....+.+-..+-+.|.++.||.+||+.+.-++...+-
T Consensus 191 s~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~-L-~e-g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~ 267 (823)
T KOG2259|consen 191 SLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLA-L-SE-GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPA 267 (823)
T ss_pred cccccHHHHHHHHHHHhcCCCcchHHHHHHHHHh-h-cc-cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCC
Confidence 3444556788887777899999999998888543 2 22 2223345667778889999999999999999877765532
Q ss_pred CC---------CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHH
Q 000319 372 SI---------PVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 407 (1674)
Q Consensus 372 ~V---------~~elL~~LaeR~RDKK~~VRkeAm~~La~LY~~~ 407 (1674)
.. -+..+..+.+=+||..+.||.+|.+.||.+=+..
T Consensus 268 ~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vS 312 (823)
T KOG2259|consen 268 PLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVS 312 (823)
T ss_pred cccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhH
Confidence 21 2245789999999999999999999999876653
No 78
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=88.15 E-value=11 Score=48.55 Aligned_cols=234 Identities=17% Similarity=0.169 Sum_probs=143.4
Q ss_pred hhhHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCCCcH---HHHHHH-HHHHHHhhhhhhHHHHHHHHHhhc--CCCC
Q 000319 160 PESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKND---TARRLA-MNVIEQCAGKLEAGIKQFLVSSMS--GDSR 233 (1674)
Q Consensus 160 ~~~V~~~m~~IL~~vI~Ese~vp~~lLd~IL~~l~~~~~~---~a~~lA-~~v~~~~~dkL~~~I~q~f~~~l~--~d~~ 233 (1674)
+..+.....+-+..-+. +..+++.+...+...++. .+.-+| ...|..-..-.+|||..+|..++. ||..
T Consensus 155 a~~~ag~v~g~~i~~~~-----~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~ 229 (569)
T KOG1242|consen 155 AYGLAGLVNGLGIESLK-----EFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKI 229 (569)
T ss_pred hHHHHHHHcCcHHhhhh-----hhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccc
Confidence 33444444444444433 345566666655433221 122222 223333345689999999998875 3321
Q ss_pred CCCCcchHHHHHHHHHhh-----cchhhhhhhhcccccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhh
Q 000319 234 PGHSHIDYHEVIYDVYRC-----SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRL 308 (1674)
Q Consensus 234 ~~~~~~~~h~Li~eL~~~-----~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~ 308 (1674)
.. -...+.+-+..|-++ ++.+|.+.|+.+... .=..-..|++++|-|--.....+....|++--..-...
T Consensus 230 ~~-Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~----kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl 304 (569)
T KOG1242|consen 230 NK-VREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEA----KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVL 304 (569)
T ss_pred hh-hhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHH----hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHH
Confidence 11 111234444445454 445566666665553 55666789999997776655577888899999999999
Q ss_pred cCCChhHHHHHHHHhHHHHh--cCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhh-hhcCCCCHHHH-HHHHHh
Q 000319 309 TDRIVAVRMSVLEHVKSCLL--TDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVAC-HALNSIPVETV-KLVAER 384 (1674)
Q Consensus 309 ~D~s~~VR~~~ve~~~~iL~--s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~-~~l~~V~~elL-~~LaeR 384 (1674)
.|..|+||-+-.++...+-. .|| +++-+++-|.+++-||..+|... ++.++...+ +-....+-.+| -.|..-
T Consensus 305 ~DT~~evr~a~~~~l~~~~svidN~---dI~~~ip~Lld~l~dp~~~~~e~-~~~L~~ttFV~~V~~psLalmvpiL~R~ 380 (569)
T KOG1242|consen 305 WDTKPEVRKAGIETLLKFGSVIDNP---DIQKIIPTLLDALADPSCYTPEC-LDSLGATTFVAEVDAPSLALMVPILKRG 380 (569)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhccH---HHHHHHHHHHHHhcCcccchHHH-HHhhcceeeeeeecchhHHHHHHHHHHH
Confidence 99999999987777655332 233 47788899999999999888765 444433222 11222233333 344555
Q ss_pred hccCChhHHHHHHHHHHHHHHHH
Q 000319 385 LRDKSVLVKRYTMERLADIFRGC 407 (1674)
Q Consensus 385 ~RDKK~~VRkeAm~~La~LY~~~ 407 (1674)
+.++....++.|..-.+++++..
T Consensus 381 l~eRst~~kr~t~~IidNm~~Lv 403 (569)
T KOG1242|consen 381 LAERSTSIKRKTAIIIDNMCKLV 403 (569)
T ss_pred HhhccchhhhhHHHHHHHHHHhh
Confidence 66777888888888888777753
No 79
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=88.09 E-value=0.44 Score=42.21 Aligned_cols=52 Identities=15% Similarity=0.109 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHhhhhhcC---CCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000319 352 ENVRKQVVAVICDVACHALN---SIPVETVKLVAERLRDKSVLVKRYTMERLADI 403 (1674)
Q Consensus 352 EkVR~aaV~ai~~la~~~l~---~V~~elL~~LaeR~RDKK~~VRkeAm~~La~L 403 (1674)
+.||.+|+.+++.++..... ..-.+++..|...++|-...||..|...|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 47999999999886643322 23446788999999999999999999999875
No 80
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=87.73 E-value=84 Score=39.23 Aligned_cols=317 Identities=12% Similarity=0.082 Sum_probs=179.9
Q ss_pred cCCCcchHHHHHHHHHHHhhhcCCCCCCCh---hHHHHHHHHhc-CC------CCC-CCCChhhHHHHHHHHHhhhhhhe
Q 000319 66 KHQDKDVKLLVATCICEITRITAPEAPYSD---DVLKLIVGTFS-GL------KDT-GGPSFGRRVVILETLAKYRSCVV 134 (1674)
Q Consensus 66 ~HkD~~Vr~~vAcCLadIlRI~APdAPytd---d~lkli~~~f~-~L------~d~-~~p~f~q~~~lLesLA~vks~vl 134 (1674)
...|++=|+=+-..|+.+||.|- +-|..+ +.+.+|++++. .+ ++| +...+.|..-+|-.+-.--.++-
T Consensus 3 a~~~~~~r~daY~~l~~~l~~~~-~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~ 81 (372)
T PF12231_consen 3 AGSDRSSRLDAYMTLNNALKAYD-NLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVS 81 (372)
T ss_pred CcCCcHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHh
Confidence 44566656666666899999994 233333 34556666652 22 233 44556777777777765544443
Q ss_pred eccCCchHHHHHHHHHHHHhh-cCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHhhc--C--CCcH----HHHHHH
Q 000319 135 MLDLECDELVNEMYSTFFAVA-SDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALG--R--NKND----TARRLA 205 (1674)
Q Consensus 135 m~DL~~~~Li~~lF~~ff~iv-~~~~~~~V~~~m~~IL~~vI~Ese~vp~~lLd~IL~~l~--~--~~~~----~a~~lA 205 (1674)
.++ ++...-+..+..... .+..++.+...-..+|..-==....++.+....|+..+. . -.+. .+..+=
T Consensus 82 ~l~---~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~ 158 (372)
T PF12231_consen 82 TLS---DDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIY 158 (372)
T ss_pred hCC---hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHH
Confidence 333 233334444444443 455677766666665554111122345555555554331 1 1121 667888
Q ss_pred HHHHHHhhhhhhHHHHHHHHHhhcCC-CCCCCCcchHHHHHHHHHhhcc-h-hhhh-hhhcccccccCCChHHHHHHHHH
Q 000319 206 MNVIEQCAGKLEAGIKQFLVSSMSGD-SRPGHSHIDYHEVIYDVYRCSP-Q-ILSG-VVPYLTGELLTDQLDTRLKAVGL 281 (1674)
Q Consensus 206 ~~v~~~~~dkL~~~I~q~f~~~l~~d-~~~~~~~~~~h~Li~eL~~~~P-~-lL~~-ViP~Le~EL~sed~~~Rl~At~l 281 (1674)
+.++..+.+.|...+..+|-.++.+- +.......++..+..++-.+.+ + .+.. |...+...+..+ .+-..-++.
T Consensus 159 ~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~--~~~~~~~~~ 236 (372)
T PF12231_consen 159 KRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG--KLIQLYCER 236 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc--cHHHHHHHH
Confidence 89999999999999988876554321 0011112235666666654432 2 2222 333334444433 777888888
Q ss_pred HHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHH
Q 000319 282 VGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAV 361 (1674)
Q Consensus 282 lG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~a 361 (1674)
+..|+..++. ...=|++|..+..=..+.- . . ......+.+.-...++..+|..||.+|..+
T Consensus 237 L~~mi~~~~~--~~~a~~iW~~~i~LL~~~~-------~-------~---~w~~~n~wL~v~e~cFn~~d~~~k~~A~~a 297 (372)
T PF12231_consen 237 LKEMIKSKDE--YKLAMQIWSVVILLLGSSR-------L-------D---SWEHLNEWLKVPEKCFNSSDPQVKIQAFKA 297 (372)
T ss_pred HHHHHhCcCC--cchHHHHHHHHHHHhCCch-------h-------h---ccHhHhHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 9999988531 2334678987766553321 1 1 111245788888899999999999999988
Q ss_pred HHHhhhhh-cC-CCCHHHHH--------HHHHhhccCCh-hHHHHHHHHHHHHHHHH
Q 000319 362 ICDVACHA-LN-SIPVETVK--------LVAERLRDKSV-LVKRYTMERLADIFRGC 407 (1674)
Q Consensus 362 i~~la~~~-l~-~V~~elL~--------~LaeR~RDKK~-~VRkeAm~~La~LY~~~ 407 (1674)
=.-+.+.. .+ ......++ .+..+.-+|.. .||..+|..++.++-..
T Consensus 298 W~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~~ 354 (372)
T PF12231_consen 298 WRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYYA 354 (372)
T ss_pred HHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchHHHH
Confidence 77766622 11 12223332 33333333333 89999999999876443
No 81
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=87.70 E-value=4.5 Score=50.61 Aligned_cols=154 Identities=12% Similarity=0.101 Sum_probs=109.3
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhC
Q 000319 269 TDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLL 348 (1674)
Q Consensus 269 sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~~~eIi~~L~~rL~ 348 (1674)
+++...|.+|.+.|++|+..+...|...---+-..+|.-..|-...|=....+.|-.+|.+|.-. .-+.-++.+++
T Consensus 341 ~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~----~~I~~i~~~Il 416 (516)
T KOG2956|consen 341 SEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL----QCIVNISPLIL 416 (516)
T ss_pred chhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch----hHHHHHhhHHh
Confidence 47899999999999999998876666666667889999999999999888899998888887421 34556677777
Q ss_pred CChhHHHHHHHHHHHHhh----hhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCccccccccc
Q 000319 349 DFDENVRKQVVAVICDVA----CHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWI 424 (1674)
Q Consensus 349 D~DEkVR~aaV~ai~~la----~~~l~~V~~elL~~LaeR~RDKK~~VRkeAm~~La~LY~~~~~~~~~~~~~~~~~~wI 424 (1674)
-.|+..=.++++....+. ...|..+=.+++=++.+=.---...||+.|+=+|-.+|+..=- ..-...+...
T Consensus 417 t~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~-----~~mePhL~~L 491 (516)
T KOG2956|consen 417 TADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGM-----EEMEPHLEQL 491 (516)
T ss_pred cCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhH-----HhhhhHhhhc
Confidence 799998888887765543 2333333333333444444555678999999999999997510 1222345555
Q ss_pred hHHHhhh
Q 000319 425 PGKILRC 431 (1674)
Q Consensus 425 PskIL~~ 431 (1674)
++.-+++
T Consensus 492 t~sk~~L 498 (516)
T KOG2956|consen 492 TSSKLNL 498 (516)
T ss_pred cHHHHHH
Confidence 5555544
No 82
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=87.54 E-value=36 Score=44.59 Aligned_cols=138 Identities=14% Similarity=0.175 Sum_probs=108.5
Q ss_pred hHHHHHHHHHhhcchhhhhhhhcccccccCCChHHHHHHHHHHHHhhcCC--CCCchhhcHHHHHHH----HhhhcCCCh
Q 000319 240 DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP--GSANNEQFHSVFSEF----LKRLTDRIV 313 (1674)
Q Consensus 240 ~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~--~~~~a~~y~~~w~~f----L~R~~D~s~ 313 (1674)
+.-..+..|-...|.+.+--+-++..-|.++.-..|--.++..|.+.... +..++..||...+.. -.|+.|..|
T Consensus 281 ~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~p 360 (1128)
T COG5098 281 DISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYP 360 (1128)
T ss_pred HHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccch
Confidence 45567788999999999999999999999999999999999999887642 236778787776655 469999999
Q ss_pred hHHHHHHHHhHHHHhcCCC-CCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh-cCCCCHHH
Q 000319 314 AVRMSVLEHVKSCLLTDPS-RADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-LNSIPVET 377 (1674)
Q Consensus 314 ~VR~~~ve~~~~iL~s~p~-~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~-l~~V~~el 377 (1674)
-+|...++.+..|.--+.- .....+++..+..||.|----||+.||+.++.+-... |...-...
T Consensus 361 y~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF~~~h~~~ 426 (1128)
T COG5098 361 YTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPFASEHGSQ 426 (1128)
T ss_pred HHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCChhhhccch
Confidence 9999999998776543311 1223589999999999999999999999998876643 44443333
No 83
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=87.24 E-value=0.75 Score=39.31 Aligned_cols=39 Identities=28% Similarity=0.428 Sum_probs=29.6
Q ss_pred hHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHH
Q 000319 323 VKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAV 361 (1674)
Q Consensus 323 ~~~iL~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~a 361 (1674)
...++...|.....+.+.+.+..||.|++..||.+||..
T Consensus 3 l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 3 LSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 445566666655566888889999999999999888765
No 84
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=87.18 E-value=6.7 Score=52.98 Aligned_cols=150 Identities=16% Similarity=0.279 Sum_probs=106.5
Q ss_pred hhhhhhhhcccccccCCChHHHHHHHHHHHHhhcCCCCCc----------------------------------h-----
Q 000319 254 QILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSAN----------------------------------N----- 294 (1674)
Q Consensus 254 ~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~----------------------------------a----- 294 (1674)
+++..+-|.|+.++.+.+=..|..|++-|...+..+.... +
T Consensus 249 di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~ 328 (815)
T KOG1820|consen 249 DILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRP 328 (815)
T ss_pred hhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcch
Confidence 6788899999999999999999999999999998765110 1
Q ss_pred --hhc-HHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhh-hhc
Q 000319 295 --EQF-HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVAC-HAL 370 (1674)
Q Consensus 295 --~~y-~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~-~~l 370 (1674)
..| ...+..+|.|+-|+-+.+|-..+.++-.++.+.+ ...+.+++..-+-+....+|-..-..+...-. ...
T Consensus 329 ~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~----l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 329 LFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP----LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred hhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence 111 4556778888888888888888888877777554 23567777777777788887774333322111 111
Q ss_pred CCCCH----HHHHHHHHhhccCChhHHHHHHHHHHHHHHHH
Q 000319 371 NSIPV----ETVKLVAERLRDKSVLVKRYTMERLADIFRGC 407 (1674)
Q Consensus 371 ~~V~~----elL~~LaeR~RDKK~~VRkeAm~~La~LY~~~ 407 (1674)
..++. .+...++-.+.|+...||..|.+.++.+++.+
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~ 445 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVH 445 (815)
T ss_pred cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHh
Confidence 22322 34557777888888888888888888888865
No 85
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=86.55 E-value=4.2 Score=51.15 Aligned_cols=54 Identities=20% Similarity=0.097 Sum_probs=26.0
Q ss_pred HHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 000319 342 ALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLAD 402 (1674)
Q Consensus 342 ~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VRkeAm~~La~ 402 (1674)
.|..-|.|.|..||.+||.+++.+-.. +.+..|..-+.|....||..|+.+|+.
T Consensus 151 ~L~~~L~d~d~~Vra~A~raLG~l~~~-------~a~~~L~~al~d~~~~VR~aA~~al~~ 204 (410)
T TIGR02270 151 ALEAALTHEDALVRAAALRALGELPRR-------LSESTLRLYLRDSDPEVRFAALEAGLL 204 (410)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhccc-------cchHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 334444466666666666655543321 111112233556666666666665533
No 86
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=83.12 E-value=12 Score=47.19 Aligned_cols=135 Identities=15% Similarity=0.026 Sum_probs=90.5
Q ss_pred hHHHHHHHHHhhcchhhhhhhhcccccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHH
Q 000319 240 DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSV 319 (1674)
Q Consensus 240 ~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ 319 (1674)
.+| |--|-..-|..+...++.|.. .++..+|..|+..++ +. ..+..+...+....|..+.||.++
T Consensus 42 ~Ah--LdgL~~~G~~a~~~L~~aL~~---d~~~ev~~~aa~al~---~~-------~~~~~~~~L~~~L~d~~~~vr~aa 106 (410)
T TIGR02270 42 LAH--VDGLVLAGKAATELLVSALAE---ADEPGRVACAALALL---AQ-------EDALDLRSVLAVLQAGPEGLCAGI 106 (410)
T ss_pred HHH--HHHHHHhhHhHHHHHHHHHhh---CCChhHHHHHHHHHh---cc-------CChHHHHHHHHHhcCCCHHHHHHH
Confidence 455 555555556665555555532 466777776665553 11 112358888999999988899999
Q ss_pred HHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHH
Q 000319 320 LEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMER 399 (1674)
Q Consensus 320 ve~~~~iL~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VRkeAm~~ 399 (1674)
++..+.| . -.+....|...|-|.|..||.+++.+... +.. -+.+.+ ..-+.|..+.||..|+..
T Consensus 107 a~ALg~i--~------~~~a~~~L~~~L~~~~p~vR~aal~al~~---r~~--~~~~~L---~~~L~d~d~~Vra~A~ra 170 (410)
T TIGR02270 107 QAALGWL--G------GRQAEPWLEPLLAASEPPGRAIGLAALGA---HRH--DPGPAL---EAALTHEDALVRAAALRA 170 (410)
T ss_pred HHHHhcC--C------chHHHHHHHHHhcCCChHHHHHHHHHHHh---hcc--ChHHHH---HHHhcCCCHHHHHHHHHH
Confidence 9998741 1 13577788888899999999988855533 221 134433 344569999999999999
Q ss_pred HHHHHH
Q 000319 400 LADIFR 405 (1674)
Q Consensus 400 La~LY~ 405 (1674)
||.+=.
T Consensus 171 LG~l~~ 176 (410)
T TIGR02270 171 LGELPR 176 (410)
T ss_pred HHhhcc
Confidence 988644
No 87
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=82.69 E-value=37 Score=44.49 Aligned_cols=144 Identities=13% Similarity=0.071 Sum_probs=91.5
Q ss_pred hhcchhhhhhhhcccccccCCChHHHHHHHHHHHHhhcCCCC-------CchhhcHHHHHHHHhhh-cCCChhHHHHHHH
Q 000319 250 RCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGS-------ANNEQFHSVFSEFLKRL-TDRIVAVRMSVLE 321 (1674)
Q Consensus 250 ~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~-------~~a~~y~~~w~~fL~R~-~D~s~~VR~~~ve 321 (1674)
.-.|++|..+.+.++..-.-.+..+|.-|+-.+|.|.-.--. .....+-..+...|+.. .+.+...++.+++
T Consensus 389 ~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk 468 (574)
T smart00638 389 YPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLK 468 (574)
T ss_pred cCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHH
Confidence 446778888888877776667889999999999988842111 11233334444444333 3456677888888
Q ss_pred HhHHHHhcCCCCCChHHHHHHHHhhhC---CChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHH
Q 000319 322 HVKSCLLTDPSRADAPQILTALCDRLL---DFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTME 398 (1674)
Q Consensus 322 ~~~~iL~s~p~~~~~~eIi~~L~~rL~---D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VRkeAm~ 398 (1674)
++++ +-+| ..+..|...+. .....||.+||.++..++...+..+-.-++..+.. ++..+.||..|..
T Consensus 469 aLGN--~g~~------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n--~~e~~EvRiaA~~ 538 (574)
T smart00638 469 ALGN--AGHP------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLN--RAEPPEVRMAAVL 538 (574)
T ss_pred hhhc--cCCh------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcC--CCCChHHHHHHHH
Confidence 8875 2223 34455554444 45678999999999888776655544444443322 2244789998887
Q ss_pred HHHHH
Q 000319 399 RLADI 403 (1674)
Q Consensus 399 ~La~L 403 (1674)
.|.+-
T Consensus 539 ~lm~t 543 (574)
T smart00638 539 VLMET 543 (574)
T ss_pred HHHhc
Confidence 77654
No 88
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=81.96 E-value=9.1 Score=46.28 Aligned_cols=135 Identities=21% Similarity=0.294 Sum_probs=93.7
Q ss_pred HHHHHhhc-chhhhhhhhcccccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCC-----------
Q 000319 245 IYDVYRCS-PQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRI----------- 312 (1674)
Q Consensus 245 i~eL~~~~-P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s----------- 312 (1674)
++.|-.+- |..+-..++.|+. .++..+|..|...||.+-.... +...+.-..|..
T Consensus 95 ~~aLg~~~~~~a~~~li~~l~~---d~~~~vR~~aa~aL~~~~~~~a----------~~~l~~~l~~~~~~~a~~~~~~~ 161 (335)
T COG1413 95 ADALGELGDPEAVPPLVELLEN---DENEGVRAAAARALGKLGDERA----------LDPLLEALQDEDSGSAAAALDAA 161 (335)
T ss_pred HHHHHccCChhHHHHHHHHHHc---CCcHhHHHHHHHHHHhcCchhh----------hHHHHHHhccchhhhhhhhccch
Confidence 33343442 5555555555554 6899999999999998876532 222222233322
Q ss_pred -hhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChh
Q 000319 313 -VAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVL 391 (1674)
Q Consensus 313 -~~VR~~~ve~~~~iL~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~ 391 (1674)
-.+|...+..... ..+ ...+..+...+.|.+..||.++..+++.+.... ..+...+...+.|-.+.
T Consensus 162 ~~~~r~~a~~~l~~----~~~----~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-----~~~~~~l~~~~~~~~~~ 228 (335)
T COG1413 162 LLDVRAAAAEALGE----LGD----PEAIPLLIELLEDEDADVRRAAASALGQLGSEN-----VEAADLLVKALSDESLE 228 (335)
T ss_pred HHHHHHHHHHHHHH----cCC----hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-----hhHHHHHHHHhcCCCHH
Confidence 1567766666543 111 357788899999999999999999998887765 44557778899999999
Q ss_pred HHHHHHHHHHHHHH
Q 000319 392 VKRYTMERLADIFR 405 (1674)
Q Consensus 392 VRkeAm~~La~LY~ 405 (1674)
||..++..|+.+=.
T Consensus 229 vr~~~~~~l~~~~~ 242 (335)
T COG1413 229 VRKAALLALGEIGD 242 (335)
T ss_pred HHHHHHHHhcccCc
Confidence 99999999987543
No 89
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.64 E-value=1.7e+02 Score=42.15 Aligned_cols=63 Identities=13% Similarity=0.257 Sum_probs=51.8
Q ss_pred hhHHhHHHHHHHhchhhhhcCCCcchHHHHHHHHHHHhhhcC-CCCCCChhHHHHHHHHhcCCCC
Q 000319 47 SILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITA-PEAPYSDDVLKLIVGTFSGLKD 110 (1674)
Q Consensus 47 ~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~A-PdAPytdd~lkli~~~f~~L~d 110 (1674)
.-.+.+.-++-.|++++.| |+-+.||.+.-.-++|+..-+- -=.||..+-.-++...+..|++
T Consensus 1123 ~~~~~l~~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~ 1186 (1702)
T KOG0915|consen 1123 KGKEALDIILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEP 1186 (1702)
T ss_pred cHHHHHHHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccch
Confidence 3456788888899999999 9999999998888899888763 3348888877788888888876
No 90
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=80.10 E-value=65 Score=39.40 Aligned_cols=204 Identities=13% Similarity=0.126 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhccc-ccccHHHHHHHHHhhcCCCcH--HHH--HHHHHHH-------H
Q 000319 143 LVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEES-EDIQEDLLVILLSALGRNKND--TAR--RLAMNVI-------E 210 (1674)
Q Consensus 143 Li~~lF~~ff~iv~~~~~~~V~~~m~~IL~~vI~Es-e~vp~~lLd~IL~~l~~~~~~--~a~--~lA~~v~-------~ 210 (1674)
+-..+-+.|..++..+..+.....|...|..-+.-. ..+|..+++.+-.-+...+.. -+| .|+..+. .
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~ 98 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSL 98 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHH
Confidence 444455555555556666666667777776655554 789999999998877655442 222 2222222 2
Q ss_pred HhhhhhhHHHHHHHHHhhcCCCC-CCCCcc-hHHHHHH--------------HHH----hhcchhhhhhhhcccccccCC
Q 000319 211 QCAGKLEAGIKQFLVSSMSGDSR-PGHSHI-DYHEVIY--------------DVY----RCSPQILSGVVPYLTGELLTD 270 (1674)
Q Consensus 211 ~~~dkL~~~I~q~f~~~l~~d~~-~~~~~~-~~h~Li~--------------eL~----~~~P~lL~~ViP~Le~EL~se 270 (1674)
.....+-+.+-+++.++...... .....+ -++-++. ..| .--|.+|.+ |-+...|.++
T Consensus 99 ~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~--~kvyskl~~~ 176 (339)
T PF12074_consen 99 KFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLS--EKVYSKLASE 176 (339)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcC--HHHHhccCCH
Confidence 22233444555555555543211 111111 2222222 011 112333333 3444443222
Q ss_pred ChHHHHHHHHHHHHhhcCCCCCchhh-cHHHHHHHHhhhcCC--ChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhh
Q 000319 271 QLDTRLKAVGLVGDLFAVPGSANNEQ-FHSVFSEFLKRLTDR--IVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRL 347 (1674)
Q Consensus 271 d~~~Rl~At~llG~mfs~~~~~~a~~-y~~~w~~fL~R~~D~--s~~VR~~~ve~~~~iL~s~p~~~~~~eIi~~L~~rL 347 (1674)
+ .=.-.++.+-.++.......... .....++|+-=.... ++.||...++.+..++..+|.. ....|+.+|...|
T Consensus 177 ~--d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~-l~~~li~~l~~~l 253 (339)
T PF12074_consen 177 E--DLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL-LSKSLISGLWKWL 253 (339)
T ss_pred h--HHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHH
Confidence 2 22345555555555433222111 234445666666666 7777777777777777777642 3345556655555
Q ss_pred CCCh
Q 000319 348 LDFD 351 (1674)
Q Consensus 348 ~D~D 351 (1674)
.+.+
T Consensus 254 ~~~~ 257 (339)
T PF12074_consen 254 SSSE 257 (339)
T ss_pred Hhcc
Confidence 4433
No 91
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=79.65 E-value=2.1e+02 Score=37.49 Aligned_cols=259 Identities=20% Similarity=0.218 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhchhhhhcCCCcchHHHHHHHHHHHhhhcCCCCCCChhHHHHHH
Q 000319 23 KDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKLIV 102 (1674)
Q Consensus 23 ~~eLlkrLk~L~~~Ls~~dQ~~~~~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~APdAPytdd~lkli~ 102 (1674)
.++-++-|..+..-.....|+ .+....++..++.-+-.+ -|..+.++.+-
T Consensus 3 v~~~~~~~~s~~~if~k~Q~s-~aGhrk~~a~l~~~~t~~-----------------------------~f~~~flr~vn 52 (885)
T COG5218 3 VSETVSSLESMQLIFNKIQQS-SAGHRKSLAELMEMLTAH-----------------------------EFSEEFLRVVN 52 (885)
T ss_pred hhHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHH-----------------------------hhHHHHHHHHH
Confidence 355666777777777776554 344455555554433111 12234445444
Q ss_pred HHhcCCCCCCCCChhhHHHHHHHHHhhhhhheeccCC-chHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccc
Q 000319 103 GTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLE-CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDI 181 (1674)
Q Consensus 103 ~~f~~L~d~~~p~f~q~~~lLesLA~vks~vlm~DL~-~~~Li~~lF~~ff~iv~~~~~~~V~~~m~~IL~~vI~Ese~v 181 (1674)
..+.-=.++..| .+-+..|.++-++ .|.|.| ..+++...|.+++..+ +..-++|..-.+.||..+.+--..|
T Consensus 53 ~IL~~Kk~~si~--dRil~fl~~f~~Y----~~~~dpeg~~~V~~~~~h~lRg~-eskdk~VR~r~lqila~~~d~v~eI 125 (885)
T COG5218 53 TILACKKNPSIP--DRILSFLKRFFEY----DMPDDPEGEELVAGTFYHLLRGT-ESKDKKVRKRSLQILALLSDVVREI 125 (885)
T ss_pred HhhccccCCCcH--HHHHHHHHHHHHh----cCCCChhhhHHHHHHHHHHHhcc-cCcchhHHHHHHHHHHHHHHhcchH
Confidence 444433334443 3444444444333 467777 6899999998887654 3455789999999998888877777
Q ss_pred cHHHHHHHHHhhcC---CCcHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhcchhhhh
Q 000319 182 QEDLLVILLSALGR---NKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSG 258 (1674)
Q Consensus 182 p~~lLd~IL~~l~~---~~~~~a~~lA~~v~~~~~dkL~~~I~q~f~~~l~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ 258 (1674)
...+-..++..+.. .+..+.+.=|..+ --||.++ .+ +...+.-.++..+-+..|+
T Consensus 126 De~l~N~L~ekl~~R~~DRE~~VR~eAv~~------------L~~~Qe~-~~-----neen~~~n~l~~~vqnDPS---- 183 (885)
T COG5218 126 DEVLANGLLEKLSERLFDREKAVRREAVKV------------LCYYQEM-EL-----NEENRIVNLLKDIVQNDPS---- 183 (885)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHH------------HHHHHhc-cC-----ChHHHHHHHHHHHHhcCcH----
Confidence 77777766655521 1111111111111 1233332 11 1223444466666666553
Q ss_pred hhhcccccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHH
Q 000319 259 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQ 338 (1674)
Q Consensus 259 ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~~~e 338 (1674)
.++|..|.- +++. -++|+-.-|.|..|.+...|..+-..+-.-+---.+.+...-
T Consensus 184 -------------~EVRr~all----ni~v--------dnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kr 238 (885)
T COG5218 184 -------------DEVRRLALL----NISV--------DNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKR 238 (885)
T ss_pred -------------HHHHHHHHH----Heee--------CCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccce
Confidence 567777642 2222 224677889999999999998876654321100001111112
Q ss_pred HHHHHHhhhCCChhHHHHHHHHHHHHhh
Q 000319 339 ILTALCDRLLDFDENVRKQVVAVICDVA 366 (1674)
Q Consensus 339 Ii~~L~~rL~D~DEkVR~aaV~ai~~la 366 (1674)
|. .+.--|.|-|..||.|++.+|..-.
T Consensus 239 i~-l~ewgl~dRe~sv~~a~~d~ia~~w 265 (885)
T COG5218 239 IL-LMEWGLLDREFSVKGALVDAIASAW 265 (885)
T ss_pred eh-hhhhcchhhhhhHHHHHHHHHHHHh
Confidence 22 4555689999999999999985433
No 92
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=79.44 E-value=8.3 Score=51.62 Aligned_cols=149 Identities=17% Similarity=0.193 Sum_probs=116.2
Q ss_pred hhhhhcccccccCCChHHHHHHHHHHHHhhcCC-CCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCC--
Q 000319 257 SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP-GSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR-- 333 (1674)
Q Consensus 257 ~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~-~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~-- 333 (1674)
..+.|-|.....+..-..|-.=...|...++.- ..-+.-..|.++--.|.-..=.++.||+.-....+..+.-++..
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 346666666666777777888888888888742 23345678899999999999999999999999999988877642
Q ss_pred CChHHHHHHHHhhhCCCh---hHHHHHHHHHHHHhhhhh----cCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 000319 334 ADAPQILTALCDRLLDFD---ENVRKQVVAVICDVACHA----LNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFR 405 (1674)
Q Consensus 334 ~~~~eIi~~L~~rL~D~D---EkVR~aaV~ai~~la~~~----l~~V~~elL~~LaeR~RDKK~~VRkeAm~~La~LY~ 405 (1674)
.....+++.+..--.|.| --||..|.+.+..+.... +...-.++++.+.-=+-|||..||++|+.+=..-|-
T Consensus 946 ~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~ 1024 (1030)
T KOG1967|consen 946 EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWYM 1024 (1030)
T ss_pred HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhh
Confidence 234567888888888888 679999999998887633 334566899999999999999999999987655443
No 93
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=79.36 E-value=54 Score=42.57 Aligned_cols=299 Identities=16% Similarity=0.149 Sum_probs=163.6
Q ss_pred HHHHHHhchh--hhhcCCCcchHHHHHHH---HHHHhhhcCCCC---------------CCCh---hHHH---HHHHH--
Q 000319 53 QPFLNAIVQP--VLLKHQDKDVKLLVATC---ICEITRITAPEA---------------PYSD---DVLK---LIVGT-- 104 (1674)
Q Consensus 53 ~~~~~~Lv~~--~LL~HkD~~Vr~~vAcC---LadIlRI~APdA---------------Pytd---d~lk---li~~~-- 104 (1674)
+|+...||+. ++|+|+-++||.-.|-- |+-||.-|--.+ -|.. .+|+ .|++.
T Consensus 599 kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~ 678 (975)
T COG5181 599 KPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHR 678 (975)
T ss_pred CcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhc
Confidence 3666777776 78999999999876543 333333221111 1110 1333 22222
Q ss_pred hcCCCCCCCCChhhHHHHHHHH------HhhhhhheeccCCch-HHHHHHHHHHHHhhc--CCChhhHHHHHHHHHHHHh
Q 000319 105 FSGLKDTGGPSFGRRVVILETL------AKYRSCVVMLDLECD-ELVNEMYSTFFAVAS--DDHPESVLSSMQTIMIVLL 175 (1674)
Q Consensus 105 f~~L~d~~~p~f~q~~~lLesL------A~vks~vlm~DL~~~-~Li~~lF~~ff~iv~--~~~~~~V~~~m~~IL~~vI 175 (1674)
|..+.-|-+.-.+.-.-||.+= ..+...-.+|+...+ -=..+-.+.+|.++- ..|.+.+......-+.-|=
T Consensus 679 ~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is 758 (975)
T COG5181 679 FRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCIS 758 (975)
T ss_pred ccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHH
Confidence 3444445454444445555432 233333355665322 124455566666653 2455555555544444332
Q ss_pred cccccccHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHH---hhcCCCCC----CCCcchHHHHH-HH
Q 000319 176 EESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVS---SMSGDSRP----GHSHIDYHEVI-YD 247 (1674)
Q Consensus 176 ~Ese~vp~~lLd~IL~~l~~~~~~~a~~lA~~v~~~~~dkL~~~I~q~f~~---~l~~d~~~----~~~~~~~h~Li-~e 247 (1674)
.. -=|++||+++|++|.-+.. -.++|..-+=.+-.-.|.-|+= ++.+=..+ .+..++++-.. .-
T Consensus 759 ~a--iGPqdvL~~LlnnLkvqeR------q~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFey 830 (975)
T COG5181 759 RA--IGPQDVLDILLNNLKVQER------QQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEY 830 (975)
T ss_pred hh--cCHHHHHHHHHhcchHHHH------HhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHH
Confidence 22 2489999999999852211 0111211111111112222321 11110111 11223444333 34
Q ss_pred HHhhcchhhhhhhhcccccccCCChHHHHHHHHHHHHhhcCC-CCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHH
Q 000319 248 VYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP-GSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSC 326 (1674)
Q Consensus 248 L~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~-~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~i 326 (1674)
+.+.+-+.+.++.|.||+-|...|.-.|+.|..++-.+--.. |.--....=.+.+-..--.-|.+|.|=..+.++.-.+
T Consensus 831 ig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~ 910 (975)
T COG5181 831 IGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESF 910 (975)
T ss_pred HHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHH
Confidence 677888999999999999999999999999999999886543 2211222223333333345678898888777666543
Q ss_pred HhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHH
Q 000319 327 LLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVIC 363 (1674)
Q Consensus 327 L~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~ 363 (1674)
-..-. ..-+.+++..-|.-|--+||.+-+.++-
T Consensus 911 ~~~lg----~g~~m~Yv~qGLFHPs~~VRk~ywtvyn 943 (975)
T COG5181 911 ATVLG----SGAMMKYVQQGLFHPSSTVRKRYWTVYN 943 (975)
T ss_pred HHHhc----cHHHHHHHHHhccCchHHHHHHHHHHHh
Confidence 22211 2358899999999999999998665553
No 94
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=79.22 E-value=24 Score=47.59 Aligned_cols=132 Identities=11% Similarity=0.067 Sum_probs=96.7
Q ss_pred CChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCC
Q 000319 270 DQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLD 349 (1674)
Q Consensus 270 ed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~~~eIi~~L~~rL~D 349 (1674)
--.-+|..++-|+|+|.-+++ .+++.|-+++..=|....| +.||--+|-+..+|-.... .-..--+..+..+|.|
T Consensus 943 ~~~~vra~~vvTlakmcLah~-~LaKr~~P~lvkeLe~~~~--~aiRnNiV~am~D~C~~YT--am~d~YiP~I~~~L~D 1017 (1529)
T KOG0413|consen 943 FSDKVRAVGVVTLAKMCLAHD-RLAKRLMPMLVKELEYNTA--HAIRNNIVLAMGDICSSYT--AMTDRYIPMIAASLCD 1017 (1529)
T ss_pred cchHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhhhH--HHHhcceeeeehhhHHHHH--HHHHHhhHHHHHHhcC
Confidence 345689999999999998876 7899898888877776554 6788665555544333211 1112346788899999
Q ss_pred ChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000319 350 FDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 406 (1674)
Q Consensus 350 ~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VRkeAm~~La~LY~~ 406 (1674)
|++-||++++.-+..+-.+.+-.-..+++--+.--+-|-+..||..|=-.++.+...
T Consensus 1018 p~~iVRrqt~ilL~rLLq~~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1018 PSVIVRRQTIILLARLLQFGIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred chHHHHHHHHHHHHHHHhhhhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhh
Confidence 999999999999988877777666777665555666799999888776666666554
No 95
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=79.21 E-value=2.9e+02 Score=38.76 Aligned_cols=180 Identities=14% Similarity=0.154 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHH-------HHHhhcCCCCCCCCcch--HHHHHHHHHhhcchhhh-hhhhcccccccC
Q 000319 200 TARRLAMNVIEQCAGKLEAGIKQF-------LVSSMSGDSRPGHSHID--YHEVIYDVYRCSPQILS-GVVPYLTGELLT 269 (1674)
Q Consensus 200 ~a~~lA~~v~~~~~dkL~~~I~q~-------f~~~l~~d~~~~~~~~~--~h~Li~eL~~~~P~lL~-~ViP~Le~EL~s 269 (1674)
.+--+|.....+|--.+..+|.+| |+..+..+=.-=+..++ +-.-+.+|....|..+. .|+|.|=....+
T Consensus 514 ~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls 593 (1133)
T KOG1943|consen 514 TIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLS 593 (1133)
T ss_pred hcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcC
Confidence 334566777777777777777766 33333321000001111 22334448889999999 589999899999
Q ss_pred CChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCC
Q 000319 270 DQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLD 349 (1674)
Q Consensus 270 ed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~~~eIi~~L~~rL~D 349 (1674)
-+...|.-++-..|.+++.-. .-+|-+.. ..+=|++|... ++..++++-.+
T Consensus 594 ~~~~~r~g~~la~~ev~~~~~----~l~~~~~~---------l~e~~i~~l~~----------------ii~~~~~~~~~ 644 (1133)
T KOG1943|consen 594 KDASMRHGVFLAAGEVIGALR----KLEPVIKG---------LDENRIAGLLS----------------IIPPICDRYFY 644 (1133)
T ss_pred CChHHhhhhHHHHHHHHHHhh----hhhhhhhh---------hHHHHhhhhhh----------------hccHHHHHHhc
Confidence 999999999999998886521 11121211 22233443322 22222333333
Q ss_pred Ch--hHHHHHHHHHHHHhhhhhcC----CCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhh
Q 000319 350 FD--ENVRKQVVAVICDVACHALN----SIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCL 409 (1674)
Q Consensus 350 ~D--EkVR~aaV~ai~~la~~~l~----~V~~elL~~LaeR~RDKK~~VRkeAm~~La~LY~~~~~ 409 (1674)
.- +..|.++++.|..+.-.... .+-......+++-+++-+ .+|..|...++.++..|+.
T Consensus 645 rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~ 709 (1133)
T KOG1943|consen 645 RGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVK 709 (1133)
T ss_pred cchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHh
Confidence 22 55566666665554433332 122223344555555555 7999999999999998864
No 96
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=78.94 E-value=1.9e+02 Score=37.27 Aligned_cols=166 Identities=11% Similarity=0.169 Sum_probs=100.6
Q ss_pred CCCChhhHHHHHHHHHhhhhhheeccCCchHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHH
Q 000319 112 GGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLS 191 (1674)
Q Consensus 112 ~~p~f~q~~~lLesLA~vks~vlm~DL~~~~Li~~lF~~ff~iv~~~~~~~V~~~m~~IL~~vI~Ese~vp~~lLd~IL~ 191 (1674)
+...+.+.+.+|.++-+..+..+ .++.+..|-+..+.+.+....+.....-..++..||. ...||.+-+..++.
T Consensus 147 ~~~~l~~ll~~l~nviKfn~~~l-----~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~-y~~iP~~sl~~~i~ 220 (464)
T PF11864_consen 147 EESNLSDLLQFLVNVIKFNFNYL-----DEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIIT-YGDIPSESLSPCIE 220 (464)
T ss_pred hhhhHHHHHHHHHHHHhcCCCCC-----CHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH-cCcCChHHHHHHHH
Confidence 45667788888888877766543 2345555555555554333334444555777777777 67899999998887
Q ss_pred hhcC-----CCcHHHHHHHHHHHHHh-hhhhhHHHHHHHHHhhcCCCCCCCCc---ch--HHHHHHHHHhh----cchh-
Q 000319 192 ALGR-----NKNDTARRLAMNVIEQC-AGKLEAGIKQFLVSSMSGDSRPGHSH---ID--YHEVIYDVYRC----SPQI- 255 (1674)
Q Consensus 192 ~l~~-----~~~~~a~~lA~~v~~~~-~dkL~~~I~q~f~~~l~~d~~~~~~~---~~--~h~Li~eL~~~----~P~l- 255 (1674)
-|-. .-.+++++...+||... ...+=+.++.++ .+.+...... ++ ++-+=.-+|.. .|.+
T Consensus 221 vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL----~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~ 296 (464)
T PF11864_consen 221 VLCSIVNSVSLCKPSWRTMRNLLKSHLGHSAIRTLCDIL----RSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLP 296 (464)
T ss_pred HHhhHhcccccchhHHHHHHHHHcCccHHHHHHHHHHHH----cccCccccccHHHHhhHHHHHHHHHhccccCCcceec
Confidence 6621 22348999999999543 344444444444 2111111111 11 12222234666 3333
Q ss_pred --hhhhhhcccccccCCChHHHHHHHHHHHHhhc
Q 000319 256 --LSGVVPYLTGELLTDQLDTRLKAVGLVGDLFA 287 (1674)
Q Consensus 256 --L~~ViP~Le~EL~sed~~~Rl~At~llG~mfs 287 (1674)
+..|+|.|..=|+..+.-+=...+.++-++|.
T Consensus 297 ~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 297 FSPSSVLPSLLNALKSNSPRVDYEILLLINRLLD 330 (464)
T ss_pred ccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence 33499999999998888777788888888883
No 97
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.95 E-value=50 Score=43.93 Aligned_cols=99 Identities=19% Similarity=0.299 Sum_probs=73.3
Q ss_pred hhhhhhhhcccccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhh-------hcCCChhHHHHHHHHhHHH
Q 000319 254 QILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKR-------LTDRIVAVRMSVLEHVKSC 326 (1674)
Q Consensus 254 ~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R-------~~D~s~~VR~~~ve~~~~i 326 (1674)
+++..|++. |.+.|.++|.++..+.-++.+..... + +-+-+-++ -.|..-.-|...++.+..|
T Consensus 317 ~l~mDvLrv----Lss~dldvr~Ktldi~ldLvssrNve--d----iv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~c 386 (948)
T KOG1058|consen 317 GLIMDVLRV----LSSPDLDVRSKTLDIALDLVSSRNVE--D----IVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHAC 386 (948)
T ss_pred HHHHHHHHH----cCcccccHHHHHHHHHHhhhhhccHH--H----HHHHHHHHHHhccccccccchHHHHHHHHHHHHH
Confidence 444555555 67899999999999999999876421 1 11111111 2455667799999999999
Q ss_pred HhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHH
Q 000319 327 LLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICD 364 (1674)
Q Consensus 327 L~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~ 364 (1674)
-.+-|+. +..++..|.+-+-|+.+.-=..++.-|.+
T Consensus 387 av~Fp~~--aatvV~~ll~fisD~N~~aas~vl~FvrE 422 (948)
T KOG1058|consen 387 AVKFPEV--AATVVSLLLDFISDSNEAAASDVLMFVRE 422 (948)
T ss_pred hhcChHH--HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 9988864 67899999999999999987777766655
No 98
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=77.08 E-value=19 Score=45.72 Aligned_cols=193 Identities=13% Similarity=0.221 Sum_probs=105.5
Q ss_pred HHHHHHHHHHhhhcCCC-CCCChhHHHHHHHHhcCC-CCCCCCChhhHHHHHHHHHhhhhhheeccCCch---HHHHHHH
Q 000319 74 LLVATCICEITRITAPE-APYSDDVLKLIVGTFSGL-KDTGGPSFGRRVVILETLAKYRSCVVMLDLECD---ELVNEMY 148 (1674)
Q Consensus 74 ~~vAcCLadIlRI~APd-APytdd~lkli~~~f~~L-~d~~~p~f~q~~~lLesLA~vks~vlm~DL~~~---~Li~~lF 148 (1674)
-|+.-|+.-|+=++.-+ .||.+.++..++..+... .+|++|.| .+|+.|+++..=- .+++-+.+ .+-..||
T Consensus 44 eylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~F--nHylFEsi~~lir--~~~~~~~~~v~~~E~~L~ 119 (435)
T PF03378_consen 44 EYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRF--NHYLFESIGALIR--FVCEADPEAVSQFEEALF 119 (435)
T ss_dssp HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHH--HHHHHHHHHHHHH--HS-GGGHH---HHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcch--hhhHHHHHHHHHH--hccCCChhHHHHHHHHHH
Confidence 46777877776666544 399888888777777655 46888877 4678899986422 23332222 4555556
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHHHhcccc--cccH---HHHHHHHHhhcCCCc---HHHHHHHHHHHHHhhhhhh--H
Q 000319 149 STFFAVASDDHPESVLSSMQTIMIVLLEESE--DIQE---DLLVILLSALGRNKN---DTARRLAMNVIEQCAGKLE--A 218 (1674)
Q Consensus 149 ~~ff~iv~~~~~~~V~~~m~~IL~~vI~Ese--~vp~---~lLd~IL~~l~~~~~---~~a~~lA~~v~~~~~dkL~--~ 218 (1674)
-.|..+...+- .....+...||+.+++-.. .+|. .++..||+...-... .+.-+|-...|.+++..+. .
T Consensus 120 P~f~~ILq~dV-~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~ 198 (435)
T PF03378_consen 120 PPFQEILQQDV-QEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANN 198 (435)
T ss_dssp HHHHHHHHTT--TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchh
Confidence 66655554332 2445566778888888766 5665 344444433211111 2445688888888877652 1
Q ss_pred ---HHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhcch-hhhhhhhcccccccCCChHHHHHHHHHHHHhhcCC
Q 000319 219 ---GIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQ-ILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP 289 (1674)
Q Consensus 219 ---~I~q~f~~~l~~d~~~~~~~~~~h~Li~eL~~~~P~-lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~ 289 (1674)
.|-.-|.-++..+. .+...++|+..|...+|. .|...+|+ ..+-++.|+=+.+
T Consensus 199 ~l~~iLgvFQkLi~sk~----~D~~gF~LL~~iv~~~p~~~l~~yl~~--------------I~~lll~RLq~sk 255 (435)
T PF03378_consen 199 QLEPILGVFQKLIASKA----NDHYGFDLLESIVENLPPEALEPYLKQ--------------IFTLLLTRLQSSK 255 (435)
T ss_dssp -CHHHHHHHHHHHT-TT----CHHHHHHHHHHHHHHS-HHHHGGGHHH--------------HHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHCCCC----cchHHHHHHHHHHHHCCHHHHHHHHHH--------------HHHHHHHHHhhCC
Confidence 22223344444331 223466788888887776 45555444 4555666665543
No 99
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=76.53 E-value=22 Score=49.34 Aligned_cols=137 Identities=20% Similarity=0.215 Sum_probs=100.7
Q ss_pred CcchHHHHHHHHH-----hhcchhhhhhhhcccccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCC
Q 000319 237 SHIDYHEVIYDVY-----RCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDR 311 (1674)
Q Consensus 237 ~~~~~h~Li~eL~-----~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~ 311 (1674)
..+.-.+++..+| +..| +.+-+|-|-.-+.+....+|..|.+.+|.||.. .....+-.+.+.|+-=..|.
T Consensus 792 ~~~~s~~vf~s~~~~m~s~l~~--~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~---~~~e~m~~v~~~~~~ll~~~ 866 (1549)
T KOG0392|consen 792 EFLSSFEVFNSLAPLMHSFLHP--LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKS---ATRETMATVINGFLPLLGDL 866 (1549)
T ss_pred chhhhHHHHHHHHHhhhhhhhh--hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhccch
Confidence 3445556666666 2344 667788888889999999999999999999975 34567777788888777888
Q ss_pred ChhHHHHHHHHhHHHHhcCCCC---CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhh--------hcCCCCHHHH
Q 000319 312 IVAVRMSVLEHVKSCLLTDPSR---ADAPQILTALCDRLLDFDENVRKQVVAVICDVACH--------ALNSIPVETV 378 (1674)
Q Consensus 312 s~~VR~~~ve~~~~iL~s~p~~---~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~--------~l~~V~~elL 378 (1674)
+--+|.+-...+..+|.....+ .-..-++.-|..|+-|.+|.||.+|-+++..+... .+..+|.+++
T Consensus 867 ~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl 944 (1549)
T KOG0392|consen 867 DKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELL 944 (1549)
T ss_pred hhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHH
Confidence 8888887777766666542111 11234778899999999999999999999887652 2345677776
No 100
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=76.29 E-value=7.7 Score=50.73 Aligned_cols=108 Identities=16% Similarity=0.154 Sum_probs=82.6
Q ss_pred cHHHHH-HHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhh-hhcCCCC
Q 000319 297 FHSVFS-EFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVAC-HALNSIP 374 (1674)
Q Consensus 297 y~~~w~-~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~-~~l~~V~ 374 (1674)
|+.-+. ..++=|.=.+..||+..+++..+.+-.-+..-...+|...+..-+.|+++.+|..+|+++..+|. -+-..+.
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln 406 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLN 406 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhc
Confidence 444443 33445566688999999999988665332212234788999999999999999999999988875 4445689
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHHH
Q 000319 375 VETVKLVAERLRDKSVLVKRYTMERLADIF 404 (1674)
Q Consensus 375 ~elL~~LaeR~RDKK~~VRkeAm~~La~LY 404 (1674)
.|+|+.++.---|-...+|..+...||++=
T Consensus 407 ~Ellr~~ar~q~d~~~~irtntticlgki~ 436 (690)
T KOG1243|consen 407 GELLRYLARLQPDEHGGIRTNTTICLGKIA 436 (690)
T ss_pred HHHHHHHHhhCccccCcccccceeeecccc
Confidence 999999988888888889988888887763
No 101
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=75.70 E-value=3.1 Score=45.67 Aligned_cols=120 Identities=14% Similarity=0.199 Sum_probs=88.0
Q ss_pred HHHHHHHHhhcchhhhhhhhcccccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHH
Q 000319 242 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 321 (1674)
Q Consensus 242 h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve 321 (1674)
-+++.++++..+..-..++-++-..+.+.....-..=+.+|+.|.... ......|.+...+|+.-+....+.+-+..+.
T Consensus 39 ~~IL~~~fk~h~~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~-p~~vle~~~~l~~~ld~l~~lp~~~a~~ll~ 117 (158)
T PF14676_consen 39 IQILLELFKVHEMIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKA-PLTVLECSSKLKELLDYLSFLPGDVAIGLLR 117 (158)
T ss_dssp HHHHHHHHHH-GGGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH--HHHHS-S-HHHHGGGGGTTTS-HHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHC-hHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 467888888888888888888877777665553344578888887653 2456778888899999999999999999999
Q ss_pred HhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHH
Q 000319 322 HVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICD 364 (1674)
Q Consensus 322 ~~~~iL~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~ 364 (1674)
++-.++..+++ ....++--|++-+.--|..+|..||..|++
T Consensus 118 Al~PLi~~s~~--lrd~lilvLRKamf~r~~~~R~~Av~Gfl~ 158 (158)
T PF14676_consen 118 ALLPLIKFSPS--LRDSLILVLRKAMFSRELDARQMAVNGFLQ 158 (158)
T ss_dssp HHHHHHTT-HH--HHHHHHHHHHHHTT-SSHHHHHHHHHHHH-
T ss_pred HHHHHHhcCHH--HHHHHHHHHHHHHccccHHHHHHHHHHhcC
Confidence 99998887764 234678888888999999999999998864
No 102
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=75.61 E-value=17 Score=43.89 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=21.9
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000319 377 TVKLVAERLRDKSVLVKRYTMERLADIFRG 406 (1674)
Q Consensus 377 lL~~LaeR~RDKK~~VRkeAm~~La~LY~~ 406 (1674)
.+..+.++++|....||..|...|+.+-..
T Consensus 181 ~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~ 210 (335)
T COG1413 181 AIPLLIELLEDEDADVRRAAASALGQLGSE 210 (335)
T ss_pred hhHHHHHHHhCchHHHHHHHHHHHHHhhcc
Confidence 345667777777778888888888877654
No 103
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=73.53 E-value=4.8 Score=51.52 Aligned_cols=104 Identities=16% Similarity=0.133 Sum_probs=71.9
Q ss_pred HHHHH-HHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHH
Q 000319 298 HSVFS-EFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE 376 (1674)
Q Consensus 298 ~~~w~-~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~e 376 (1674)
.+++. .|..|..|+++.||+.|+.+....+.+-|+--.-.-.++++.=-|.|..+.||+.+++.+--+..+.++.=
T Consensus 273 ~dicdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d--- 349 (740)
T COG5537 273 KDICDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTD--- 349 (740)
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcch---
Confidence 34444 79999999999999999999988887766421111234556667999999999999999866655443321
Q ss_pred HHHHHHHhhc---------cCChhHHHHHHHHHHHHHH
Q 000319 377 TVKLVAERLR---------DKSVLVKRYTMERLADIFR 405 (1674)
Q Consensus 377 lL~~LaeR~R---------DKK~~VRkeAm~~La~LY~ 405 (1674)
.++.+.+|-+ |=.. ||-.+++.|..+--
T Consensus 350 ~ir~f~eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~ 386 (740)
T COG5537 350 AIRRFVERFKDRILEFLRTDSDC-VRICSIKSLCYLRI 386 (740)
T ss_pred HHHHHHHHHHHHHHHHHhhccch-hhHHHHHHHHHHHH
Confidence 3444444443 4444 88888888876544
No 104
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.26 E-value=3.4e+02 Score=36.61 Aligned_cols=111 Identities=18% Similarity=0.200 Sum_probs=78.6
Q ss_pred chhhhhhhhcccccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCC
Q 000319 253 PQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPS 332 (1674)
Q Consensus 253 P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~ 332 (1674)
-+++.-.+-++.-.|.+.++-.=-.|...|.. |..|+ +++ ++...-+.=.+-.-|-||...|-..-.+....|+
T Consensus 104 tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS~-fvTpd--LAR---DLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe 177 (877)
T KOG1059|consen 104 TDVLMLTTNLLRKDLNSSNVYEVGLALSGLSC-IVTPD--LAR---DLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE 177 (877)
T ss_pred ccHHHHHHHHHHHHhccCccchhhheeccccc-ccCch--hhH---HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH
Confidence 33344444456666666666665666666663 33333 444 3444444445557899999999988888887775
Q ss_pred CCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcC
Q 000319 333 RADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN 371 (1674)
Q Consensus 333 ~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~ 371 (1674)
. .+.-.+-|.++|-|+|..|--|||.+||++|..++.
T Consensus 178 A--lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPk 214 (877)
T KOG1059|consen 178 A--LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQ 214 (877)
T ss_pred h--HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCc
Confidence 2 356788999999999999999999999999998865
No 105
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=72.68 E-value=29 Score=48.13 Aligned_cols=156 Identities=18% Similarity=0.256 Sum_probs=103.1
Q ss_pred cchHHHHHHHHHhh--cchhhhhhhhcccccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHH----hhh-cC
Q 000319 238 HIDYHEVIYDVYRC--SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFL----KRL-TD 310 (1674)
Q Consensus 238 ~~~~h~Li~eL~~~--~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL----~R~-~D 310 (1674)
.+++.+|+..|-++ .-..|-.|+|++-+-+.....++|..|++||.++++.-. .+....-.+|.+|| .++ +|
T Consensus 440 K~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr-~~~~~daniF~eYlfP~L~~l~~d 518 (1431)
T KOG1240|consen 440 KLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVR-DIPPSDANIFPEYLFPHLNHLLND 518 (1431)
T ss_pred HHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhcc-CCCcccchhhHhhhhhhhHhhhcc
Confidence 34678888888776 456788899999999999999999999999999998642 33333334444443 333 45
Q ss_pred -CChhHHHHHHHHhHHHHhc------------------CCC---------CCChHHHH----HHHHhhhCCChhHHHHHH
Q 000319 311 -RIVAVRMSVLEHVKSCLLT------------------DPS---------RADAPQIL----TALCDRLLDFDENVRKQV 358 (1674)
Q Consensus 311 -~s~~VR~~~ve~~~~iL~s------------------~p~---------~~~~~eIi----~~L~~rL~D~DEkVR~aa 358 (1674)
-...||++...+++.+-.+ .|. ..+..++. ..+...|.|++.-||.+-
T Consensus 519 ~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~L 598 (1431)
T KOG1240|consen 519 SSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRAL 598 (1431)
T ss_pred CccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 5677899888777653321 111 11222333 344456788888888888
Q ss_pred HHHHHHhhhhhcCCCCHH-HHHHHHHhhccCChhHHH
Q 000319 359 VAVICDVACHALNSIPVE-TVKLVAERLRDKSVLVKR 394 (1674)
Q Consensus 359 V~ai~~la~~~l~~V~~e-lL~~LaeR~RDKK~~VRk 394 (1674)
++.|+.+..+--..=+.+ +|..|.-=+-||.+..|.
T Consensus 599 le~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~ 635 (1431)
T KOG1240|consen 599 LESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRG 635 (1431)
T ss_pred HHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHH
Confidence 888877765444433333 456666667777776664
No 106
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=72.41 E-value=3.6e+02 Score=36.57 Aligned_cols=59 Identities=15% Similarity=0.271 Sum_probs=36.4
Q ss_pred cCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh
Q 000319 309 TDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA 369 (1674)
Q Consensus 309 ~D~s~~VR~~~ve~~~~iL~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~ 369 (1674)
.|.-+.|+..++..+..+|.+.|. .+..|+..|..+|-|++-+|-.-|+--+..|.+.+
T Consensus 314 ~D~L~~vk~raL~ti~~lL~~kPE--qE~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~H 372 (988)
T KOG2038|consen 314 KDPLEEVKKRALKTIYDLLTNKPE--QENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKH 372 (988)
T ss_pred cccHHHHHHHHHHHHHHHHhCCcH--HHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhC
Confidence 466666777777777776666664 23466666667777777666665555554444433
No 107
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=72.33 E-value=1.9e+02 Score=41.51 Aligned_cols=228 Identities=16% Similarity=0.223 Sum_probs=125.7
Q ss_pred HHHHHhcCCCCCC---CCChhhHHHHHHHHHhhhhhh-eeccCCchHHHHHH---------HHHHHHhhcCCChhhHHHH
Q 000319 100 LIVGTFSGLKDTG---GPSFGRRVVILETLAKYRSCV-VMLDLECDELVNEM---------YSTFFAVASDDHPESVLSS 166 (1674)
Q Consensus 100 li~~~f~~L~d~~---~p~f~q~~~lLesLA~vks~v-lm~DL~~~~Li~~l---------F~~ff~iv~~~~~~~V~~~ 166 (1674)
.|-..|++++.|. +....++.++|.++-.+-.-- ..+|-.-++||..| .+..+..+..-.|.++...
T Consensus 765 pf~G~~p~~~~p~~~g~k~~~k~~~~l~~l~nIL~Gy~~~l~~~~~~li~~Lr~p~Lp~~ew~~~~s~~~~Rlp~~l~~~ 844 (2196)
T KOG0368|consen 765 PFHGSFPRLGSPAIEGNKPHQKFHSLLNRLENILAGYDPKLDETVQELIKVLRDPELPYLEWQEHISALANRLPPNLDKS 844 (2196)
T ss_pred CccccccccCCccccccchHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHhcCCCcChHHHHHHHHHHhccCChhHHHH
Confidence 4566788887753 333445666777665432211 11221235566555 5566676777788899999
Q ss_pred HHHHHHHHhcccccccHHHHHHHHHh-hc-CCCcH---------HHHHHHHHHHHHhhhhhhHHH----HHHHH-HhhcC
Q 000319 167 MQTIMIVLLEESEDIQEDLLVILLSA-LG-RNKND---------TARRLAMNVIEQCAGKLEAGI----KQFLV-SSMSG 230 (1674)
Q Consensus 167 m~~IL~~vI~Ese~vp~~lLd~IL~~-l~-~~~~~---------~a~~lA~~v~~~~~dkL~~~I----~q~f~-~~l~~ 230 (1674)
|..++..-..-....|...|..||.. +. .+.++ |--+|...-+..-...+...+ ..|++ +-+.+
T Consensus 845 ~~~~~~~~~s~~t~FPakql~~il~~~~~~~~~~~~~~~~~~~~pl~~l~~~y~~g~~~H~~~v~~~Lle~Yl~VEk~F~ 924 (2196)
T KOG0368|consen 845 LESLVAKSASRITQFPAKQLAKILDAHLATLNRAEREVLFVNIQPLLKLVSRYSGGLEAHAKEVVHDLLEEYLEVEKLFN 924 (2196)
T ss_pred HHHHHHHHhhhcccCcHHHHHHHHHHHhhccccccchhhhhhhhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 98888887766668899999988853 32 11111 222233322222211111111 11211 00111
Q ss_pred CCCCCCCcchHHHHHHHHHhhcchhhhhhhhcccccccCCC-hHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhc
Q 000319 231 DSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQ-LDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLT 309 (1674)
Q Consensus 231 d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed-~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~ 309 (1674)
+ ....+-+.|..|-+-.+..+..|+-++- ++.+ ..--.+.+.+|+.|-. ++ ...++.|..-|.++.
T Consensus 925 ~-----~~~~~e~~i~~lr~~~~~d~~kVv~~i~---SHs~i~~KN~Lv~~ll~~l~~-~s----~~~~~~f~~iL~~l~ 991 (2196)
T KOG0368|consen 925 G-----RDSHYEDVILRLREENKKDLKKVVDIIL---SHSQIKSKNKLVLALLDQLKP-PS----SKVSDEFRDILRKLT 991 (2196)
T ss_pred c-----CcchHHHHHHHHHHhhhhHHHHHHHHHH---cchhhhhhhHHHHHHHHHhcC-CC----CCCCHHHHHHHHHHH
Confidence 1 1112334666666666665666655442 2222 2223455666666554 33 455677888888888
Q ss_pred CCChhHHHHHHHHhHHHHhcCCCCCChHHHH
Q 000319 310 DRIVAVRMSVLEHVKSCLLTDPSRADAPQIL 340 (1674)
Q Consensus 310 D~s~~VR~~~ve~~~~iL~s~p~~~~~~eIi 340 (1674)
+-+...-.++.-.|.+||...|+..+....+
T Consensus 992 ~L~~~~~~eVal~Ar~iLi~~ps~~~R~n~~ 1022 (2196)
T KOG0368|consen 992 ELNHTNTSEVALKARQILIQSPSYELRHNQI 1022 (2196)
T ss_pred hhccchHHHHHHHHHHHHHhCcchhhhHHHH
Confidence 8888877888888888888887643333333
No 108
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=71.84 E-value=1.8e+02 Score=36.37 Aligned_cols=229 Identities=18% Similarity=0.191 Sum_probs=124.1
Q ss_pred hcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh-cCCCC
Q 000319 296 QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-LNSIP 374 (1674)
Q Consensus 296 ~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~-l~~V~ 374 (1674)
+|-+-|..-|+-..--+-+=|++ .++++.+...-|+. +.+-+++-.+.+-|-|-.||.+|++.+-.++.-. +.-|.
T Consensus 22 q~v~~y~~il~~~k~~~k~k~la-sq~ip~~fk~fp~l--a~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~ 98 (460)
T KOG2213|consen 22 QHVDDYEGILKAVKGTSKEKRLA-SQFIPRFFKHFPSL--ADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVN 98 (460)
T ss_pred hhHHHHHHHHHHhhcchHHHHHH-HHHHHHHHhhCchh--hhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhH
Confidence 66777777776666656565654 57777777766764 5578888889999999999999888775554432 22222
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCccccccccchHHHhhhhccCCCCchhHHHHhhcCCcCCC
Q 000319 375 VETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTG 454 (1674)
Q Consensus 375 ~elL~~LaeR~RDKK~~VRkeAm~~La~LY~~~~~~~~~~~~~~~~~~wIPskIL~~~Y~nD~~~~lVE~vL~e~LlP~~ 454 (1674)
+.+.+.|- --.|+.||...-. .+...-...+..|-++| +|+.
T Consensus 99 d~l~qLLn--------------k~sl~~Lf~~~~~--~D~~irek~l~fi~tKl----------------------~~l~ 140 (460)
T KOG2213|consen 99 DVLVQLLN--------------KASLTGLFGQIEV--GDEQIREKVLKFIRTKL----------------------ITLK 140 (460)
T ss_pred HHHHHHHH--------------HHHHHHHHhhhhh--hhHHHHHHHHHHHHHHh----------------------hccc
Confidence 22222221 2234555554311 00000011233333333 3332
Q ss_pred CC--HHHH----HHHHHHHHhcCCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhcCC-----CcHHHHHHHHHH
Q 000319 455 FS--VKDR----VRHWVRIFSGFDRIEMKALEKILEQKQRLQ-----QEMQRYLSLRQMHQDG-----DAPEIQKKILFC 518 (1674)
Q Consensus 455 ~~--~~~R----~~~ll~l~~~LD~~~~kal~~il~~k~~l~-----~~~~~~l~l~~~~~~~-----d~~ei~~kL~~~ 518 (1674)
.. .++- +.-.-..+.+.+..++.+|..||..-..++ ..|+++.+--+...+- ..++...++-+|
T Consensus 141 ~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k~~~a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisC 220 (460)
T KOG2213|consen 141 GEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQTKAGEARLQELAEEQEGLADLDAFNVSDADYVDRFISC 220 (460)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhhhhccCcccCCChHHHHHHHHH
Confidence 11 1111 111223455667778888888887766655 3455544433322211 234444555555
Q ss_pred HHHHHhhcCCchHHHHHHHH---------HHhhchHHHHHHHHHH--hcCCCCHHHHH
Q 000319 519 FRVMSRSFAEPAKAEENFLI---------LDQLKDANVWKILMNL--LDSNTSFDQAF 565 (1674)
Q Consensus 519 I~~Ls~~fPDp~Ka~~~L~k---------f~klnD~Ri~kLLk~~--id~~td~~tv~ 565 (1674)
...-.-+|.-..+....+.- |+++-+.|=..+||.+ |++.|+.+.+.
T Consensus 221 l~~AvPfFargapSskf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMss~ttaq~a~ 278 (460)
T KOG2213|consen 221 LLMAVPFFARGAPSSKFVEYLNKHIIPHHFDKLTEERKLDLLKALAEMSSYTTAQAAR 278 (460)
T ss_pred HHHhhhhhhcCCchhHHHHHHHhhhcccccccchHHHHHHHHHHHHHhCccchHHHHH
Confidence 55545666665555555433 5556678888888888 55566554443
No 109
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=71.68 E-value=24 Score=48.16 Aligned_cols=91 Identities=23% Similarity=0.414 Sum_probs=73.9
Q ss_pred HHHHHHHHHhhcchhhhhhhhcccccccC-------CChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCCh
Q 000319 241 YHEVIYDVYRCSPQILSGVVPYLTGELLT-------DQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIV 313 (1674)
Q Consensus 241 ~h~Li~eL~~~~P~lL~~ViP~Le~EL~s-------ed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~ 313 (1674)
+-.++..|+.|-|++-..++-+|..+... -+...++..++.+|.|....-......+ .+...+|.-|.=.+.
T Consensus 481 YsRlVAtl~~~M~dvat~lv~~L~~eFr~~~hkK~q~~ietk~~~VrfIsEL~KF~lv~~~~if-~cLk~ll~dF~~hnI 559 (1128)
T KOG2051|consen 481 YSRLVATLSKCMPDVATELVTMLRKEFRSHLHKKAQINIETKLKIVRFISELCKFQLVPKFEIF-SCLKMLLNDFTHHNI 559 (1128)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHhhhhhCccChHHHH-HHHHHHHHhcccccH
Confidence 45899999999999999999999888753 3688899999999999876422222222 356678888988999
Q ss_pred hHHHHHHHHhHHHHhcCCC
Q 000319 314 AVRMSVLEHVKSCLLTDPS 332 (1674)
Q Consensus 314 ~VR~~~ve~~~~iL~s~p~ 332 (1674)
++=+.+++.|+.+|.++|.
T Consensus 560 Em~c~lLE~~GrfLlr~pE 578 (1128)
T KOG2051|consen 560 EMACVLLESCGRFLLRSPE 578 (1128)
T ss_pred HHHHHHHHhcchhhhcChh
Confidence 9999999999999999986
No 110
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.95 E-value=47 Score=43.96 Aligned_cols=164 Identities=13% Similarity=0.134 Sum_probs=113.5
Q ss_pred hHHHHHHHHHhhcchhhhhhhhcccccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHH---------------H
Q 000319 240 DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSE---------------F 304 (1674)
Q Consensus 240 ~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~---------------f 304 (1674)
++--++|.++---|+-|-..+|-|-..|..+|+.+-..||..+.++-....-++..--|..|+- .
T Consensus 163 kAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKL 242 (877)
T KOG1059|consen 163 KAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKL 242 (877)
T ss_pred HHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHH
Confidence 5777888888889999999999999999999999999999999988875544444333444332 1
Q ss_pred HhhhcCCChhHHHHHHHHhHHHHhc----------------------CCCCC-ChHHHHHHHHhhhCCChhHHHHHHHHH
Q 000319 305 LKRLTDRIVAVRMSVLEHVKSCLLT----------------------DPSRA-DAPQILTALCDRLLDFDENVRKQVVAV 361 (1674)
Q Consensus 305 L~R~~D~s~~VR~~~ve~~~~iL~s----------------------~p~~~-~~~eIi~~L~~rL~D~DEkVR~aaV~a 361 (1674)
.+...=..|..+...++-+-.++.+ +|+.. -++-.+..|...+-|+|.+.+.-.+-+
T Consensus 243 F~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLla 322 (877)
T KOG1059|consen 243 FAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLA 322 (877)
T ss_pred HhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHH
Confidence 2334445555555554433332221 22322 122345778888999999999999999
Q ss_pred HHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHH
Q 000319 362 ICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIF 404 (1674)
Q Consensus 362 i~~la~~~l~~V~~elL~~LaeR~RDKK~~VRkeAm~~La~LY 404 (1674)
++.++..++..|... ...+..-+-||..+||-.|+..|--+-
T Consensus 323 m~KI~ktHp~~Vqa~-kdlIlrcL~DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 323 MSKILKTHPKAVQAH-KDLILRCLDDKDESIRLRALDLLYGMV 364 (877)
T ss_pred HHHHhhhCHHHHHHh-HHHHHHHhccCCchhHHHHHHHHHHHh
Confidence 999999998887553 122345567899999999988764443
No 111
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=70.26 E-value=5.4 Score=34.20 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=28.4
Q ss_pred HHHhhhhhcCCCCH-HHHHHHHHhhccCChhHHHHHHHHH
Q 000319 362 ICDVACHALNSIPV-ETVKLVAERLRDKSVLVKRYTMERL 400 (1674)
Q Consensus 362 i~~la~~~l~~V~~-elL~~LaeR~RDKK~~VRkeAm~~L 400 (1674)
+..+....+..... .++..+..|+.|.++.||+.|++.|
T Consensus 3 l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 3 LSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 44444444444433 5778999999999999999998764
No 112
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=69.10 E-value=1.4e+02 Score=40.86 Aligned_cols=141 Identities=21% Similarity=0.275 Sum_probs=100.3
Q ss_pred HHHHHHhhc---CC--CCCCCCcchHHHHHHHHHhhcchhh-----hhhhhcccccccCCChHHHHHHHHHHHHhhcCCC
Q 000319 221 KQFLVSSMS---GD--SRPGHSHIDYHEVIYDVYRCSPQIL-----SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG 290 (1674)
Q Consensus 221 ~q~f~~~l~---~d--~~~~~~~~~~h~Li~eL~~~~P~lL-----~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~ 290 (1674)
+.||.++.- .. ..+......+|..+.-+-...|.-. -..+|.|=+-|.-.|..+|.-+++++-..+...+
T Consensus 862 QRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~ 941 (1030)
T KOG1967|consen 862 QRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE 941 (1030)
T ss_pred HHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence 456766531 11 2344445567888887777777521 2355667778899999999999999998887655
Q ss_pred CCchhhcHHHHH-HHHhhhcCCC---hhHHHHHHHHhHHHHhcCCCC---CChHHHHHHHHhhhCCChhHHHHHHHHHH
Q 000319 291 SANNEQFHSVFS-EFLKRLTDRI---VAVRMSVLEHVKSCLLTDPSR---ADAPQILTALCDRLLDFDENVRKQVVAVI 362 (1674)
Q Consensus 291 ~~~a~~y~~~w~-~fL~R~~D~s---~~VR~~~ve~~~~iL~s~p~~---~~~~eIi~~L~~rL~D~DEkVR~aaV~ai 362 (1674)
.+...|-+|+- .+|.=..|-+ ..||...+++...+..--|.+ ....+++.+|...|-|+--.||.+||.+=
T Consensus 942 -tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 942 -TLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred -ccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 56777755554 6665555555 889999999987755533432 23458999999999999999999988653
No 113
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.06 E-value=12 Score=48.00 Aligned_cols=141 Identities=21% Similarity=0.192 Sum_probs=85.6
Q ss_pred hhhhcccccccCCChHHHHHHHHHHHHhhcCCC--CCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhc-----C
Q 000319 258 GVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG--SANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT-----D 330 (1674)
Q Consensus 258 ~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~--~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s-----~ 330 (1674)
+++|.+-.-|.+.+..+|-.|+-.||.+.+... .+++-.+ .+....|.=++.... +.++..+...|.+ +
T Consensus 152 gavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~-g~l~pLl~~l~~~~~---~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 152 GAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSC-GALDPLLRLLNKSDK---LSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred CchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhh-cchHHHHHHhccccc---hHHHHHHHHHHHHHHcCCC
Confidence 455666677889999999999999999998742 1111111 122223333333232 3444444443332 3
Q ss_pred CC--CCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCC----CHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 000319 331 PS--RADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI----PVETVKLVAERLRDKSVLVKRYTMERLAD 402 (1674)
Q Consensus 331 p~--~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V----~~elL~~LaeR~RDKK~~VRkeAm~~La~ 402 (1674)
|. .+....++++|...|...|+.|...||-+++-++-...+.+ ...+...|-+.+.-.+..|+.-|+..+|+
T Consensus 228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGN 305 (514)
T KOG0166|consen 228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGN 305 (514)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccc
Confidence 43 34567899999999999999999999988876654333222 22233345555565666666555555554
No 114
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=68.87 E-value=3.6e+02 Score=38.31 Aligned_cols=131 Identities=16% Similarity=0.117 Sum_probs=89.6
Q ss_pred hHHHHHHHHHHHHh---hcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhC
Q 000319 272 LDTRLKAVGLVGDL---FAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLL 348 (1674)
Q Consensus 272 ~~~Rl~At~llG~m---fs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~~~eIi~~L~~rL~ 348 (1674)
.-+|..-++-++.+ |+..++ +.-+..-.+.=.||++...|.++.+.+..+-.-=.-+...+=|+..|..-|.
T Consensus 592 ~~Vkr~Lle~i~~LC~FFGk~ks-----ND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~lt 666 (1431)
T KOG1240|consen 592 PIVKRALLESIIPLCVFFGKEKS-----NDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLT 666 (1431)
T ss_pred hHHHHHHHHHHHHHHHHhhhccc-----ccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhcc
Confidence 46777666666665 444332 2223333344468999999999999987532211112223457799999999
Q ss_pred CChhHHHHHHHHHHHHhhhhhc-CCC-CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHH
Q 000319 349 DFDENVRKQVVAVICDVACHAL-NSI-PVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 407 (1674)
Q Consensus 349 D~DEkVR~aaV~ai~~la~~~l-~~V-~~elL~~LaeR~RDKK~~VRkeAm~~La~LY~~~ 407 (1674)
|.+|-|=..|..++.-+....+ ..- =.++++.++--+.--+.=||+.++.-++.+|+..
T Consensus 667 D~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 667 DGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred CcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence 9999998888777766655332 221 2357788888888888889999999998888864
No 115
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=68.70 E-value=2.6e+02 Score=36.93 Aligned_cols=260 Identities=18% Similarity=0.238 Sum_probs=154.1
Q ss_pred HHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhccc-----ccccHHHHHHHHHhhcCCCcH--HHHHHHHHHHHHhh-
Q 000319 142 ELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEES-----EDIQEDLLVILLSALGRNKND--TARRLAMNVIEQCA- 213 (1674)
Q Consensus 142 ~Li~~lF~~ff~iv~~~~~~~V~~~m~~IL~~vI~Es-----e~vp~~lLd~IL~~l~~~~~~--~a~~lA~~v~~~~~- 213 (1674)
+.+.++|.-+..-++ .|-.++...++.-|..+|--. ..-..+...+++..|...... .--.+...+|.+..
T Consensus 395 e~fd~vl~pLw~g~~-~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~ 473 (975)
T COG5181 395 EQFDEVLCPLWEGAS-QHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGT 473 (975)
T ss_pred HHHHHHHHHHHHHHH-hcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCC
Confidence 345555555555554 344455556666665555432 245667788888888533221 33344444454332
Q ss_pred ---hhhhHHH-HHHHHHhh----cCCCCCCCCcchHHHHHHHHHhhcchhhhhhhhcccccccCCChHHHHHHHHHHHHh
Q 000319 214 ---GKLEAGI-KQFLVSSM----SGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDL 285 (1674)
Q Consensus 214 ---dkL~~~I-~q~f~~~l----~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~m 285 (1674)
.++...| +.||.-.- .+| ..+....-+-.++..=---+|.+.--++-+ ++.+-++.|..++.++.++
T Consensus 474 ~tp~~lr~~v~pefF~~fw~rr~A~d-r~~~k~v~~ttvilAk~~g~~~v~~kil~~----~~De~ep~r~m~a~~vsri 548 (975)
T COG5181 474 DTPWKLRDQVSPEFFSPFWRRRSAGD-RRSYKQVVLTTVILAKMGGDPRVSRKILEY----YSDEPEPYRKMNAGLVSRI 548 (975)
T ss_pred CCHHHHHHhhcHHhhchHHHhhhccc-ccccceeehhHHHHHHHcCChHHHHHHHhh----ccCCcchhhhhhhHHHHHH
Confidence 2233333 23443221 122 122222223444444444567666665544 5557889999999999999
Q ss_pred hcCCCCC-c----------------------------------------hhhc-HHHHHHHHhhhcCCChhHHHHHHHHh
Q 000319 286 FAVPGSA-N----------------------------------------NEQF-HSVFSEFLKRLTDRIVAVRMSVLEHV 323 (1674)
Q Consensus 286 fs~~~~~-~----------------------------------------a~~y-~~~w~~fL~R~~D~s~~VR~~~ve~~ 323 (1674)
|+.-|.. | .+.| +.+-..-|++.+-+.|.||+...+.+
T Consensus 549 ~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~ 628 (975)
T COG5181 549 FSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLM 628 (975)
T ss_pred HHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 9876421 1 1122 67888999999999999999988887
Q ss_pred HHHHh--cCCC-CCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhh-hhcCCC--CH-HHHHHHHHhhccCChhHHHHH
Q 000319 324 KSCLL--TDPS-RADAPQILTALCDRLLDFDENVRKQVVAVICDVAC-HALNSI--PV-ETVKLVAERLRDKSVLVKRYT 396 (1674)
Q Consensus 324 ~~iL~--s~p~-~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~-~~l~~V--~~-elL~~LaeR~RDKK~~VRkeA 396 (1674)
+.+.. .+.. ..+..-+-..|-+-|-.-+..|=-.++++||.+-. +.|... |. .+|-++.--+|.|..+|-.-+
T Consensus 629 ~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nt 708 (975)
T COG5181 629 GSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANT 708 (975)
T ss_pred HHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhH
Confidence 76432 2222 11111122345555666778888888899988754 555543 22 356677888899999999999
Q ss_pred HHHHHHHHHHH
Q 000319 397 MERLADIFRGC 407 (1674)
Q Consensus 397 m~~La~LY~~~ 407 (1674)
|..++.|-...
T Consensus 709 i~lvg~I~~~~ 719 (975)
T COG5181 709 IALVGTICMNS 719 (975)
T ss_pred HHHHHHHHhcC
Confidence 99988876643
No 116
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=68.70 E-value=54 Score=43.31 Aligned_cols=187 Identities=16% Similarity=0.164 Sum_probs=102.5
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHHhhhhhhHH-HHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhcchhhhhhhhcc
Q 000319 185 LLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAG-IKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYL 263 (1674)
Q Consensus 185 lLd~IL~~l~~~~~~~a~~lA~~v~~~~~dkL~~~-I~q~f~~~l~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~L 263 (1674)
...+++..+....+.+|..+..++|.. .++... ..++|..+.. -+-+-.+++|..+.+.+
T Consensus 380 ~r~~~lDal~~aGT~~av~~i~~~I~~--~~~~~~ea~~~l~~l~~-----------------~~~~Pt~e~l~~l~~L~ 440 (618)
T PF01347_consen 380 ARKIFLDALPQAGTNPAVKFIKDLIKS--KKLTDDEAAQLLASLPF-----------------HVRRPTEELLKELFELA 440 (618)
T ss_dssp HHHHHHHHHHHH-SHHHHHHHHHHHHT--T-S-HHHHHHHHHHHHH-----------------T-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHh-----------------hcCCCCHHHHHHHHHHH
Confidence 344444444444455777777777766 333222 2233332211 11122344555555555
Q ss_pred cccccCCChHHHHHHHHHHHHhhcC----C---------CCCchhhcHHHHHHHHhh-hcCCChhHHHHHHHHhHHHHhc
Q 000319 264 TGELLTDQLDTRLKAVGLVGDLFAV----P---------GSANNEQFHSVFSEFLKR-LTDRIVAVRMSVLEHVKSCLLT 329 (1674)
Q Consensus 264 e~EL~sed~~~Rl~At~llG~mfs~----~---------~~~~a~~y~~~w~~fL~R-~~D~s~~VR~~~ve~~~~iL~s 329 (1674)
+......+..+|..|.-.+|.|.-. . .......|-.-+...|+. ....+..-++.++++++++ -
T Consensus 441 ~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~--g 518 (618)
T PF01347_consen 441 KSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL--G 518 (618)
T ss_dssp T-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--T
T ss_pred hCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc--C
Confidence 5544456778888888888887742 1 223455665555555553 3456778999999999974 2
Q ss_pred CCCCCChHHHHHHHHhhhCCC---hhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCC--hhHHHHHHHHHHH
Q 000319 330 DPSRADAPQILTALCDRLLDF---DENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKS--VLVKRYTMERLAD 402 (1674)
Q Consensus 330 ~p~~~~~~eIi~~L~~rL~D~---DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK--~~VRkeAm~~La~ 402 (1674)
+| .++..|...+.+. ...||.+||.++..++... |..+...+..-..|.. +.||-.|...|.+
T Consensus 519 ~~------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~----~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 519 HP------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC----PEKVREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp -G------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-----HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred Cc------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC----cHHHHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 23 4666776666666 8999999988886554433 4344444455545543 6799998877765
No 117
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=68.37 E-value=9.1 Score=30.27 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=24.2
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000319 378 VKLVAERLRDKSVLVKRYTMERLADIFRG 406 (1674)
Q Consensus 378 L~~LaeR~RDKK~~VRkeAm~~La~LY~~ 406 (1674)
+-.+.+.+.|..+.||..|...|+.+.+.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 44567889999999999999999999863
No 118
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=67.75 E-value=1.5e+02 Score=35.23 Aligned_cols=106 Identities=17% Similarity=0.234 Sum_probs=68.8
Q ss_pred hhhhhhhhcccccccCCChHHHHHHHHHHHHhhcCCCC---CchhhcHHHHHHHHhhhcCCChhHHHH-HHHHhHHHHhc
Q 000319 254 QILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGS---ANNEQFHSVFSEFLKRLTDRIVAVRMS-VLEHVKSCLLT 329 (1674)
Q Consensus 254 ~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~---~~a~~y~~~w~~fL~R~~D~s~~VR~~-~ve~~~~iL~s 329 (1674)
.++.+.||.+-.-|.+.++.+|..|.++|..|=..|.. -+..+=++-|..++.+-.+.+.-+|+. |++.+...+..
T Consensus 130 ~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~ 209 (254)
T PF04826_consen 130 HMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKK 209 (254)
T ss_pred hhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCc
Confidence 34455666666667788999999999999877666521 123344666777777777777777765 44444444433
Q ss_pred CCC---------------CCChHHHHHHHHhhhCCChhHHHHHHH
Q 000319 330 DPS---------------RADAPQILTALCDRLLDFDENVRKQVV 359 (1674)
Q Consensus 330 ~p~---------------~~~~~eIi~~L~~rL~D~DEkVR~aaV 359 (1674)
... ..+.+.+.+.|......+|+.||.+||
T Consensus 210 ~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~v~ 254 (254)
T PF04826_consen 210 EAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQVI 254 (254)
T ss_pred ccceeccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhhcC
Confidence 210 123445667777777889999998864
No 119
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.65 E-value=3.8e+02 Score=35.01 Aligned_cols=168 Identities=17% Similarity=0.159 Sum_probs=107.0
Q ss_pred cccccCCChHHHHHHHHHHHHhhcCCC---CCchhh--cHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCC---CC
Q 000319 264 TGELLTDQLDTRLKAVGLVGDLFAVPG---SANNEQ--FHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR---AD 335 (1674)
Q Consensus 264 e~EL~sed~~~Rl~At~llG~mfs~~~---~~~a~~--y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~---~~ 335 (1674)
-..+.+++.+.++.|+..+-++++... .+.+-. -=+.+..||+| |..+.+|.+..=++.+|-.-.... -.
T Consensus 72 ~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~--~~~~~lq~eAAWaLTnIAsgtse~T~~vv 149 (514)
T KOG0166|consen 72 LAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSR--DDNPTLQFEAAWALTNIASGTSEQTKVVV 149 (514)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHcc--CCChhHHHHHHHHHHHHhcCchhhccccc
Confidence 344568999999999999999999753 222211 13456778875 445777766655555654422211 01
Q ss_pred hHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCC----CCHHHHHHHHHhh-ccCChhHHHHHHHHHHHHHHHHhhh
Q 000319 336 APQILTALCDRLLDFDENVRKQVVAVICDVACHALNS----IPVETVKLVAERL-RDKSVLVKRYTMERLADIFRGCCLR 410 (1674)
Q Consensus 336 ~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~----V~~elL~~LaeR~-RDKK~~VRkeAm~~La~LY~~~~~~ 410 (1674)
....+..|...|..+++.||-+||=+++.+|-..... +.-..+..|..-+ .+.+....+.++=+|.+|.+.-
T Consensus 150 ~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk--- 226 (514)
T KOG0166|consen 150 DAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK--- 226 (514)
T ss_pred cCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCC---
Confidence 1134567899999999999999999999998755432 2223333333333 3333467777888888877642
Q ss_pred ccCCCccccccccchHHHhhhhccCCCC
Q 000319 411 NFNGSINQNEFEWIPGKILRCLYDKDFG 438 (1674)
Q Consensus 411 ~~~~~~~~~~~~wIPskIL~~~Y~nD~~ 438 (1674)
+.+.....+.-|=..|+.+.|..|.+
T Consensus 227 --~P~P~~~~v~~iLp~L~~ll~~~D~~ 252 (514)
T KOG0166|consen 227 --NPSPPFDVVAPILPALLRLLHSTDEE 252 (514)
T ss_pred --CCCCcHHHHHHHHHHHHHHHhcCCHH
Confidence 22333456677777888888887754
No 120
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=65.86 E-value=21 Score=35.82 Aligned_cols=83 Identities=18% Similarity=0.227 Sum_probs=71.5
Q ss_pred ccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHH
Q 000319 265 GELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALC 344 (1674)
Q Consensus 265 ~EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~~~eIi~~L~ 344 (1674)
.+|....+++|-.+..+|.+++..+. .....-+.+..-|+.=..|-++=|=+.+++....+...+|. ++++.|.
T Consensus 10 ~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~-----~vl~~L~ 83 (92)
T PF10363_consen 10 SDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD-----EVLPILL 83 (92)
T ss_pred HHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH-----HHHHHHH
Confidence 45677889999999999999999876 34556789999999999999999999999999988887774 6899999
Q ss_pred hhhCCChhH
Q 000319 345 DRLLDFDEN 353 (1674)
Q Consensus 345 ~rL~D~DEk 353 (1674)
+...|.+++
T Consensus 84 ~~y~~~~~~ 92 (92)
T PF10363_consen 84 DEYADPSEQ 92 (92)
T ss_pred HHHhCcccC
Confidence 988887763
No 121
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=65.07 E-value=82 Score=41.35 Aligned_cols=143 Identities=17% Similarity=0.111 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhh-------hhhhHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhh-cchhhhhhhhcccccccCCC
Q 000319 200 TARRLAMNVIEQCA-------GKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRC-SPQILSGVVPYLTGELLTDQ 271 (1674)
Q Consensus 200 ~a~~lA~~v~~~~~-------dkL~~~I~q~f~~~l~~d~~~~~~~~~~h~Li~eL~~~-~P~lL~~ViP~Le~EL~sed 271 (1674)
+.+.|+...|.... +.+.+++.+.+.+.....+ ..+..-.|..|-.. .|..+....|+++.. ..-.
T Consensus 420 ~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~~~LkaLGN~g~~~~i~~l~~~l~~~-~~~~ 493 (574)
T smart00638 420 AYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGD-----EEEIQLYLKALGNAGHPSSIKVLEPYLEGA-EPLS 493 (574)
T ss_pred HHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCC-----chheeeHHHhhhccCChhHHHHHHHhcCCC-CCCC
Confidence 33456666665442 3455555555555442211 01122233333222 567777777777622 2235
Q ss_pred hHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCCh
Q 000319 272 LDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFD 351 (1674)
Q Consensus 272 ~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~~~eIi~~L~~rL~D~D 351 (1674)
..+|..|+..|.++-... -....+-+|.-|+.+- ..++||++.+-.+ +.++|+... +-......-.|++
T Consensus 494 ~~iR~~Av~Alr~~a~~~---p~~v~~~l~~i~~n~~--e~~EvRiaA~~~l---m~t~P~~~~---l~~ia~~l~~E~~ 562 (574)
T smart00638 494 TFIRLAAILALRNLAKRD---PRKVQEVLLPIYLNRA--EPPEVRMAAVLVL---METKPSVAL---LQRIAELLNKEPN 562 (574)
T ss_pred HHHHHHHHHHHHHHHHhC---chHHHHHHHHHHcCCC--CChHHHHHHHHHH---HhcCCCHHH---HHHHHHHHhhcCc
Confidence 678999999999775321 1345566777776665 4578999877664 456786432 2223333346888
Q ss_pred hHHHHHHH
Q 000319 352 ENVRKQVV 359 (1674)
Q Consensus 352 EkVR~aaV 359 (1674)
..|+..+.
T Consensus 563 ~QV~sfv~ 570 (574)
T smart00638 563 LQVASFVY 570 (574)
T ss_pred HHHHHHhH
Confidence 88887643
No 122
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=63.53 E-value=5.3e+02 Score=35.25 Aligned_cols=164 Identities=18% Similarity=0.200 Sum_probs=82.4
Q ss_pred hhchHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHHhcCCCc---hHHHHHHHHHhhhc------cccChhHHHHHHHHHH
Q 000319 541 QLKDANVWKILMNLLDSNTSFDQA-FTGRDDLLKILGAKHR---LYDFLSTLSMKCSY------LLFNKEHVKEILLEVA 610 (1674)
Q Consensus 541 klnD~Ri~kLLk~~id~~td~~tv-~~a~kELlkkL~~~~~---l~e~l~~Ll~RsS~------lifNks~V~~LL~~v~ 610 (1674)
+.+|.=++++||++...+...+.. ......|++.+..... ..+++-+|-.-..+ ++-+-.-||.|.+.+.
T Consensus 464 ~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~ 543 (708)
T PF05804_consen 464 KTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLK 543 (708)
T ss_pred hcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhC
Confidence 457888999999998876444333 3445566666654322 34455554332211 2334456676766553
Q ss_pred hhcccchhhhHHHHHHHHHHHHhhC-----CcCcc--ccHHHHHHHHhhccccchHHHHHHHHHhhcchhhh-----hhc
Q 000319 611 AQKSSANAQFMQSCMDILGILARFS-----PLLLG--GTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQ-----LAA 678 (1674)
Q Consensus 611 ~~~~~~~~~~~~~a~eLL~~IS~~~-----P~lFk--~~v~~Li~lL~~~~~~~~~~aLkiLak~~k~i~e~-----~~~ 678 (1674)
.. ...++ ...+....++..+ ..++. +.+..|+++|....+ --+-+||+++-+...+... +-.
T Consensus 544 ~g-~~~dD----l~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqe-DdE~VlQil~~f~~ll~h~~tr~~ll~ 617 (708)
T PF05804_consen 544 PG-ASEDD----LLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQE-DDEIVLQILYVFYQLLFHEETREVLLK 617 (708)
T ss_pred CC-CCChH----HHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCc-hHHHHHHHHHHHHHHHcChHHHHHHHh
Confidence 21 11111 1223332333221 22222 347899999987433 2456888888776543321 110
Q ss_pred ccchHHHHHHHHhhcCChHHHHHHHHHHHhhcC
Q 000319 679 TSSSVDLLLERLCLEGSRRQAKYAVHALAAITK 711 (1674)
Q Consensus 679 ~~s~l~~~L~~lal~Gtp~qAKyAvr~Laa~~~ 711 (1674)
......-|-++.-..++..+|.|=.||-.+..
T Consensus 618 -~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e 649 (708)
T PF05804_consen 618 -ETEIPAYLIDLMHDKNAEIRKVCDNALDIIAE 649 (708)
T ss_pred -ccchHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 11223333333333445555555555554443
No 123
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.51 E-value=5.8e+02 Score=35.64 Aligned_cols=296 Identities=17% Similarity=0.203 Sum_probs=146.0
Q ss_pred hhhHHHHHHHHHHHHhccccccc---HHHHHHHHHhhcCCCcH---HHHHHHHHHHHHhh--------------hhhhHH
Q 000319 160 PESVLSSMQTIMIVLLEESEDIQ---EDLLVILLSALGRNKND---TARRLAMNVIEQCA--------------GKLEAG 219 (1674)
Q Consensus 160 ~~~V~~~m~~IL~~vI~Ese~vp---~~lLd~IL~~l~~~~~~---~a~~lA~~v~~~~~--------------dkL~~~ 219 (1674)
|.-++..+..++..||.. +-| +.+++.|...+...... .|-.+-.+|+.++. +-+=|.
T Consensus 102 p~~iRvql~~~l~~Ii~~--D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~ 179 (1010)
T KOG1991|consen 102 PELIRVQLTACLNTIIKA--DYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPD 179 (1010)
T ss_pred chHHHHHHHHHHHHHHhc--CCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH
Confidence 777888888888888877 444 78888887777433221 44444444554444 334556
Q ss_pred HHHHHHHhhcCCCCCCCCcchHHHHHHHHHhh-----------cchhhhhhhhc--------ccccccCCChHHHH----
Q 000319 220 IKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRC-----------SPQILSGVVPY--------LTGELLTDQLDTRL---- 276 (1674)
Q Consensus 220 I~q~f~~~l~~d~~~~~~~~~~h~Li~eL~~~-----------~P~lL~~ViP~--------Le~EL~sed~~~Rl---- 276 (1674)
|.++|+.++..++. .......+|..++.. +|+.+.+.+.. +=.|..+.|++.|.
T Consensus 180 il~~~~~ll~~~s~---~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~w 256 (1010)
T KOG1991|consen 180 ILQIFNGLLSQESY---QSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPW 256 (1010)
T ss_pred HHHHHHhhccccch---HHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhhcccccc
Confidence 66666666654422 112234444444433 44444443322 12355556777764
Q ss_pred -----HHHHHHHHhhcCCCCC---------chhhc-----HHHHHHHHhhhc---C---CChhHHHHHHHHhHHHHhcC-
Q 000319 277 -----KAVGLVGDLFAVPGSA---------NNEQF-----HSVFSEFLKRLT---D---RIVAVRMSVLEHVKSCLLTD- 330 (1674)
Q Consensus 277 -----~At~llG~mfs~~~~~---------~a~~y-----~~~w~~fL~R~~---D---~s~~VR~~~ve~~~~iL~s~- 330 (1674)
=|.-.|-|+|.--|+. |++-| +.+...||+=.. - .++.|=.-.+.+..+++...
T Consensus 257 wK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~ 336 (1010)
T KOG1991|consen 257 WKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQCVSHAS 336 (1010)
T ss_pred hhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhccHHH
Confidence 4788888998654322 11111 222233332111 1 22222222333333322211
Q ss_pred ------CCCCChHHHHHHHH---hh---------hCCChhHHHHHHHHHHHHhhh-hhcCCCCHHHHHHHHHhhccCChh
Q 000319 331 ------PSRADAPQILTALC---DR---------LLDFDENVRKQVVAVICDVAC-HALNSIPVETVKLVAERLRDKSVL 391 (1674)
Q Consensus 331 ------p~~~~~~eIi~~L~---~r---------L~D~DEkVR~aaV~ai~~la~-~~l~~V~~elL~~LaeR~RDKK~~ 391 (1674)
|+ .+-|+..+. .| =.||+|=||+- +.. ..+..-....+..+..-++-++..
T Consensus 337 twkll~PH---l~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~-------~Di~ed~~sp~~Aa~~~l~~~~~KR~ke 406 (1010)
T KOG1991|consen 337 TWKLLKPH---LQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKK-------FDIFEDGYSPDTAALDFLTTLVSKRGKE 406 (1010)
T ss_pred HHHHhhhH---HHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhc-------CchhcccCCCcHHHHHHHHHHHHhcchh
Confidence 21 011111110 01 15777778875 111 112222223344555555555556
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCc------cccccccchHHHhhhhccCCCCchhHHHHhhcCCcCCCCCH----HHHH
Q 000319 392 VKRYTMERLADIFRGCCLRNFNGSI------NQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSV----KDRV 461 (1674)
Q Consensus 392 VRkeAm~~La~LY~~~~~~~~~~~~------~~~~~~wIPskIL~~~Y~nD~~~~lVE~vL~e~LlP~~~~~----~~R~ 461 (1674)
+=.-.|..+..++..|-........ +--.++.|.+.|+. +.+=..++|..+..+++|.-.++ ..|+
T Consensus 407 ~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K----~s~~~~~mE~flv~hVfP~f~s~~g~Lrara 482 (1010)
T KOG1991|consen 407 TLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLK----KSPYKSQMEYFLVNHVFPEFQSPYGYLRARA 482 (1010)
T ss_pred hhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHcc----CCchHHHHHHHHHHHhhHhhcCchhHHHHHH
Confidence 6666788888888876433111111 11235666655553 22112478999999999875444 3444
Q ss_pred HHHHHHHhcCCHH
Q 000319 462 RHWVRIFSGFDRI 474 (1674)
Q Consensus 462 ~~ll~l~~~LD~~ 474 (1674)
--.++.|+..|-+
T Consensus 483 c~vl~~~~~~df~ 495 (1010)
T KOG1991|consen 483 CWVLSQFSSIDFK 495 (1010)
T ss_pred HHHHHHHHhccCC
Confidence 4444666655443
No 124
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=63.43 E-value=1.3e+02 Score=36.61 Aligned_cols=150 Identities=17% Similarity=0.188 Sum_probs=93.2
Q ss_pred hhhcccccccCCChHHHHHHHHHHHHhhcC--CCCCchhhcHHHHHHHHhhhcCCC--hhHHHHHHHHhHHHHhcC-CCC
Q 000319 259 VVPYLTGELLTDQLDTRLKAVGLVGDLFAV--PGSANNEQFHSVFSEFLKRLTDRI--VAVRMSVLEHVKSCLLTD-PSR 333 (1674)
Q Consensus 259 ViP~Le~EL~sed~~~Rl~At~llG~mfs~--~~~~~a~~y~~~w~~fL~R~~D~s--~~VR~~~ve~~~~iL~s~-p~~ 333 (1674)
++.+++.-|+......+.+|.+++|-+.-. +|..-..-|..+...+..-..|.+ +.+|.+|+.+.+-+..-. .+.
T Consensus 87 L~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~ 166 (309)
T PF05004_consen 87 LLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDE 166 (309)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCCh
Confidence 344555556666668889999999977544 345555666666665555556655 578989988776543322 222
Q ss_pred CChHHHHHHHHh---h-hC--CC---------hhHHHHHHHHHHHHhhhhhc----CCCCHHHHHHHHHhhccCChhHHH
Q 000319 334 ADAPQILTALCD---R-LL--DF---------DENVRKQVVAVICDVACHAL----NSIPVETVKLVAERLRDKSVLVKR 394 (1674)
Q Consensus 334 ~~~~eIi~~L~~---r-L~--D~---------DEkVR~aaV~ai~~la~~~l----~~V~~elL~~LaeR~RDKK~~VRk 394 (1674)
++..++++.|.. . .. |. +..|..+|+.+.+=|..... ...-.+.+..|.+.+--....||.
T Consensus 167 ~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRi 246 (309)
T PF05004_consen 167 EETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRI 246 (309)
T ss_pred hHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 333333344441 1 11 22 35688888888766654221 112223455667777777889999
Q ss_pred HHHHHHHHHHHHHh
Q 000319 395 YTMERLADIFRGCC 408 (1674)
Q Consensus 395 eAm~~La~LY~~~~ 408 (1674)
.|=+.||-||-..+
T Consensus 247 AAGEaiAll~E~~~ 260 (309)
T PF05004_consen 247 AAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999875
No 125
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=63.06 E-value=5.6e+02 Score=35.27 Aligned_cols=151 Identities=14% Similarity=0.151 Sum_probs=103.3
Q ss_pred hhhhhhhcccccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCC--
Q 000319 255 ILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPS-- 332 (1674)
Q Consensus 255 lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~-- 332 (1674)
.+.+++|.+.......+..+|...+-... ...|-....++-..+--.|++=.+|..+.||...+.....+...+..
T Consensus 395 ~~~~ilp~~~~lv~d~~~~vr~a~a~~~~--~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g 472 (759)
T KOG0211|consen 395 PDSSILPEVQVLVLDNALHVRSALASVIT--GLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIG 472 (759)
T ss_pred chhhhhHHHHHHHhcccchHHHHHhcccc--ccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCccc
Confidence 34557899999888889999887765443 33332223344344445666677789999999999776665554432
Q ss_pred -CCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhc-CCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHH
Q 000319 333 -RADAPQILTALCDRLLDFDENVRKQVVAVICDVACHAL-NSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 407 (1674)
Q Consensus 333 -~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l-~~V~~elL~~LaeR~RDKK~~VRkeAm~~La~LY~~~ 407 (1674)
.-..+.++.++...--|.-++||.+.+..|-.++...- ..+...+-..+..=+-|+-..||+.|...|..+-..+
T Consensus 473 ~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~ 549 (759)
T KOG0211|consen 473 ISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETF 549 (759)
T ss_pred chhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHh
Confidence 11234667888888888899999999999988776443 3344444445555577888899999988888765543
No 126
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.87 E-value=1.1e+02 Score=41.21 Aligned_cols=152 Identities=16% Similarity=0.286 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHhhhcCCCC-CCChhHHHHHHHHhcC-CCCCCCCChhhHHHHHHHHHhhhhhheeccCC---chHHHHHH
Q 000319 73 KLLVATCICEITRITAPEA-PYSDDVLKLIVGTFSG-LKDTGGPSFGRRVVILETLAKYRSCVVMLDLE---CDELVNEM 147 (1674)
Q Consensus 73 r~~vAcCLadIlRI~APdA-Pytdd~lkli~~~f~~-L~d~~~p~f~q~~~lLesLA~vks~vlm~DL~---~~~Li~~l 147 (1674)
--|+--||.-|+++---.+ ||.+..+..+.+.... -.+|++|-| ++|+.|+++-+ +.-.|+-. -..+...|
T Consensus 565 neylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~f--nHYLFEsi~~l--i~~t~~~~~~~vs~~e~aL 640 (960)
T KOG1992|consen 565 NEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQF--NHYLFESIGLL--IRKTCKANPSAVSSLEEAL 640 (960)
T ss_pred cHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchh--HHHHHHHHHHH--HHHHhccCchHHHHHHHHH
Confidence 3466666666666653333 6666655555554432 357888855 67899998753 22335543 13466666
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHHHHhccccc-ccHHHHHHHHHhhcCC---Cc---HHHHHHHHHHHHHhhhhhh---
Q 000319 148 YSTFFAVASDDHPESVLSSMQTIMIVLLEESED-IQEDLLVILLSALGRN---KN---DTARRLAMNVIEQCAGKLE--- 217 (1674)
Q Consensus 148 F~~ff~iv~~~~~~~V~~~m~~IL~~vI~Ese~-vp~~lLd~IL~~l~~~---~~---~~a~~lA~~v~~~~~dkL~--- 217 (1674)
|=.|..+.+.| =.....+...||+.+++-+.. +|.+...++.-.+.++ ++ .+.-+|-..++.+.+....
T Consensus 641 ~p~fq~Il~eD-I~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~ 719 (960)
T KOG1992|consen 641 FPVFQTILSED-IQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAAD 719 (960)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccc
Confidence 65554444322 235667788899999999876 8887666554444332 12 2556777777776665443
Q ss_pred --HHHHHHHHHhhc
Q 000319 218 --AGIKQFLVSSMS 229 (1674)
Q Consensus 218 --~~I~q~f~~~l~ 229 (1674)
.+|-.+|.-++.
T Consensus 720 ~l~~iLGifqkLia 733 (960)
T KOG1992|consen 720 KLSGILGIFQKLIA 733 (960)
T ss_pred cchhHHHHHHHHhc
Confidence 344456655543
No 127
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.30 E-value=5.5e+02 Score=34.94 Aligned_cols=144 Identities=16% Similarity=0.173 Sum_probs=89.4
Q ss_pred cchhhhhhhhcccccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCC--hhHHHH---HHHHhHHH
Q 000319 252 SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRI--VAVRMS---VLEHVKSC 326 (1674)
Q Consensus 252 ~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s--~~VR~~---~ve~~~~i 326 (1674)
+|+.-...--+|...|...++..+..|.+.+=.|+.. | +.+|+++..- -||.=.+ .++... ..+.++
T Consensus 14 ~p~~e~~~~~~ik~~Lek~~~~~KIeamK~ii~~mln-G----e~~p~Llm~I-iRfvlps~~~elKKLly~ywE~vP-- 85 (948)
T KOG1058|consen 14 SPDGEPMSEDEIKEKLEKGDDEVKIEAMKKIIALMLN-G----EDLPSLLMTI-IRFVLPSRNHELKKLLYYYWELVP-- 85 (948)
T ss_pred CCcccccchHHHHHHHhcCChHHHHHHHHHHHHHHHc-C----CCchHHHHHH-hheeeccCchHHHHHHHHHHHHcc--
Confidence 3433333444677788899999999999888777765 3 4556655433 2433211 111111 112222
Q ss_pred HhcCCCCCChHH---HHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000319 327 LLTDPSRADAPQ---ILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 403 (1674)
Q Consensus 327 L~s~p~~~~~~e---Ii~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VRkeAm~~La~L 403 (1674)
.+++++....| +.++++.=|.-|.|=||-.+..-+|.+--.-+- +.++-++..-+--++.=||+.|+-++..|
T Consensus 86 -Kt~~dgkl~~EMILvcna~RkDLQHPNEyiRG~TLRFLckLkE~ELl---epl~p~IracleHrhsYVRrNAilaifsI 161 (948)
T KOG1058|consen 86 -KTDSDGKLLHEMILVCNAYRKDLQHPNEYIRGSTLRFLCKLKEPELL---EPLMPSIRACLEHRHSYVRRNAILAIFSI 161 (948)
T ss_pred -ccCCCcccHHHHHHHHHHHhhhccCchHhhcchhhhhhhhcCcHHHh---hhhHHHHHHHHhCcchhhhhhhheeehhH
Confidence 23333322233 347888889999999999999998886432211 12334455555667889999999999999
Q ss_pred HHHH
Q 000319 404 FRGC 407 (1674)
Q Consensus 404 Y~~~ 407 (1674)
|+..
T Consensus 162 yk~~ 165 (948)
T KOG1058|consen 162 YKNF 165 (948)
T ss_pred Hhhh
Confidence 9974
No 128
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=62.09 E-value=1.6e+02 Score=35.83 Aligned_cols=67 Identities=21% Similarity=0.255 Sum_probs=39.9
Q ss_pred HHHHHHHhhccccchHHHHHHHHHhh--cchhhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhc
Q 000319 644 EELVNLLKEENEIIKEGILHVLAKAG--GTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAIT 710 (1674)
Q Consensus 644 ~~Li~lL~~~~~~~~~~aLkiLak~~--k~i~e~~~~~~s~l~~~L~~lal~Gtp~qAKyAvr~Laa~~ 710 (1674)
.+.++.|.+......+.+|..|.++- .++.+.+......+...+.+....|++++.-.|.++++.+.
T Consensus 46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ 114 (309)
T PF05004_consen 46 KEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLA 114 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 34455555555555677777775442 22333332222345666777777899888889988865543
No 129
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=61.91 E-value=13 Score=34.91 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=27.0
Q ss_pred ccceEEEecCCC---CceEEEEEEeecCCCCeeEEEccC
Q 000319 1376 IGYRIKVWWPMD---KQFYEGTIKSYDPIKKKHVILYDD 1411 (1674)
Q Consensus 1376 vG~rv~V~Wp~D---~~~Y~G~V~~y~~~~~~H~v~YdD 1411 (1674)
.|.+|.|+--.+ .+||.|+|....... +..|.|+|
T Consensus 3 ~G~~VEV~s~e~g~~gaWf~a~V~~~~~~~-~~~V~Y~~ 40 (68)
T PF05641_consen 3 KGDEVEVSSDEDGFRGAWFPATVLKENGDD-KYLVEYDD 40 (68)
T ss_dssp TT-EEEEEE-SBTT--EEEEEEEEEEETT--EEEEEETT
T ss_pred CCCEEEEEEcCCCCCcEEEEEEEEEeCCCc-EEEEEECC
Confidence 588999987664 699999999999876 99999964
No 130
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=60.51 E-value=62 Score=35.72 Aligned_cols=139 Identities=14% Similarity=0.169 Sum_probs=87.1
Q ss_pred ChhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhC-CcCccccH----HHHHHHHhhccc-cchHHHHHHHHHhhcc
Q 000319 598 NKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFS-PLLLGGTE----EELVNLLKEENE-IIKEGILHVLAKAGGT 671 (1674)
Q Consensus 598 Nks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~-P~lFk~~v----~~Li~lL~~~~~-~~~~~aLkiLak~~k~ 671 (1674)
+++.+..+..++..--.+.+....-.+..|+..+...+ |++|..|. ..|+.+|+..++ .+.+.++.+|..+-..
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 67777777777654333322222345678999999998 99996663 667777776443 3556777777665432
Q ss_pred hhhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhhcCCCchHHHHHHHHHhhccc
Q 000319 672 IREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMP 751 (1674)
Q Consensus 672 i~e~~~~~~s~l~~~L~~lal~Gtp~qAKyAvr~Laa~~~~~~~~~~~~L~~~L~~~L~~~~~l~t~L~sL~~Iaq~ap~ 751 (1674)
+... +. + -+++ +||...++...+|..+.+ ..-....|.+|+.+-+..|.
T Consensus 99 ~~~~-p~----l---~Rei---~tp~l~~~i~~ll~l~~~--------------------~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 99 IRGK-PT----L---TREI---ATPNLPKFIQSLLQLLQD--------------------SSCPETALDALATLLPHHPT 147 (165)
T ss_pred hcCC-Cc----h---HHHH---hhccHHHHHHHHHHHHhc--------------------cccHHHHHHHHHHHHHHCCc
Confidence 2221 11 1 1111 457666666555553222 01234678889999999999
Q ss_pred ccccchHHHHHHHHHh
Q 000319 752 VFETRESEIEEFIKSK 767 (1674)
Q Consensus 752 vfe~~~~eI~~fIik~ 767 (1674)
.|-.+...|..+++.-
T Consensus 148 t~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 148 TFRPFANKIESALLSL 163 (165)
T ss_pred cccchHHHHHHHHHHH
Confidence 9999999998887643
No 131
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=59.82 E-value=18 Score=38.25 Aligned_cols=42 Identities=21% Similarity=0.407 Sum_probs=36.3
Q ss_pred cceEEEecCCCCceEEEEEEeecCCCCeeEEEccCCcceeeec
Q 000319 1377 GYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLRL 1419 (1674)
Q Consensus 1377 G~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdDgd~E~l~L 1419 (1674)
|.+|=..|+.|.-||.|+|..+- ..+.-.|.+++|+.+.+..
T Consensus 1 g~~VlAR~~~DG~YY~GtV~~~~-~~~~~lV~f~~~~~~~v~~ 42 (124)
T PF15057_consen 1 GQKVLARREEDGFYYPGTVKKCV-SSGQFLVEFDDGDTQEVPI 42 (124)
T ss_pred CCeEEEeeCCCCcEEeEEEEEcc-CCCEEEEEECCCCEEEeCh
Confidence 77889999999999999999998 6677888888888777654
No 132
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=58.67 E-value=92 Score=41.09 Aligned_cols=190 Identities=17% Similarity=0.231 Sum_probs=103.1
Q ss_pred hHHHHHHHHh-cCCCCCCCCChhhHHHHHHHHHhhhhhheeccCCchHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHH
Q 000319 96 DVLKLIVGTF-SGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVL 174 (1674)
Q Consensus 96 d~lkli~~~f-~~L~d~~~p~f~q~~~lLesLA~vks~vlm~DL~~~~Li~~lF~~ff~iv~~~~~~~V~~~m~~IL~~v 174 (1674)
..+..++.+| ......+.+.-.+-..+| -....||-++|-.|..||..+++.-.- +.++.+.......+..+
T Consensus 29 ~~Y~~L~~~l~~~~~~~d~~~~~~l~~~L---~~L~~~Vs~Ld~~~~~LV~ail~~~W~----~~~~~~v~~y~~Fl~~L 101 (563)
T PF05327_consen 29 SQYDELVEQLSDPSESKDAISVSQLIRWL---KALSSCVSLLDSSCKQLVEAILSLNWL----GRDEDFVEAYIQFLINL 101 (563)
T ss_dssp HHHHHHHHHHHS-TT-TTS--HHHHHHHH---HHHHHGGGGG-SCCHHHHHHHHT-TGG----GS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccccCcccccHHHHHHHH---HHHHHHHHHhhhHHHHHHHHHHcCCCC----CCCHHHHHHHHHHHHHH
Confidence 3455667777 333333444444444444 444567777887799999988887332 23567777788888888
Q ss_pred hcccccccHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCCCC--CCCcchHHHHHHHHHhhc
Q 000319 175 LEESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRP--GHSHIDYHEVIYDVYRCS 252 (1674)
Q Consensus 175 I~Ese~vp~~lLd~IL~~l~~~~~~~a~~lA~~v~~~~~dkL~~~I~q~f~~~l~~d~~~--~~~~~~~h~Li~eL~~~~ 252 (1674)
+.....--..+|+.|..+|.+.....+-. .+.... ......+|.+|..|-+++
T Consensus 102 vsa~~~yl~~vl~~LV~~f~p~~~~~~~~-------------------------~~~~~~~~~~~~~~vH~~L~~Il~lv 156 (563)
T PF05327_consen 102 VSAQPKYLSPVLSMLVKNFIPPPSSIAEW-------------------------PGCPPEKRREIYERVHDALQKILRLV 156 (563)
T ss_dssp HHH-GGGHHHHHHHHHHGGGS-HHHHHH----------------------------------------HHHHHHHHHHH-
T ss_pred HHhhHHHHHHHHHHHHHhccCCCcccccc-------------------------chhhhhhhhhhHHHHHHHHHHHHHHc
Confidence 88877888888999999887642211000 111111 112236899999999999
Q ss_pred chhhhhhhhcccccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHH
Q 000319 253 PQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSV 319 (1674)
Q Consensus 253 P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ 319 (1674)
|.....++|.|....=.-....+...+ -+-.|+...+. ...--..+|..-+.|...++++|.+.|
T Consensus 157 P~s~~~L~~~l~~~FP~~~~~~~~~~~-Yv~NlL~l~~Y-~P~L~~~Il~lIi~rLi~iDVeiq~~~ 221 (563)
T PF05327_consen 157 PTSPSFLIPILVQNFPHKRKSKDEHVN-YVRNLLRLTEY-CPELRSDILSLIIERLIKIDVEIQIEL 221 (563)
T ss_dssp GGGHHHHHHHHHHTS--TTS-HHHHHH-HHHHHHHHHCC--GGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCcCCCCChHHHHH-HHHHHHHHHcc-hHHHHHHHHHHHHHHHHHHhcccccCc
Confidence 999888888877666544444433322 22222221110 123334666666666666666555544
No 133
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=57.33 E-value=1.1e+02 Score=34.71 Aligned_cols=130 Identities=17% Similarity=0.157 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHhhcC-CCCCc---------------hhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcC-------
Q 000319 274 TRLKAVGLVGDLFAV-PGSAN---------------NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD------- 330 (1674)
Q Consensus 274 ~Rl~At~llG~mfs~-~~~~~---------------a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~------- 330 (1674)
+|+.|..+|+.++.. +.-.| ....++++...+ .|.++.||++.+.....+|...
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il---~Dp~~kvR~aA~~~l~~lL~gsk~~L~~A 78 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCIL---KDPSPKVRAAAASALAALLEGSKPFLAQA 78 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHH---cCCchhHHHHHHHHHHHHHHccHHHHHHH
Confidence 799999999999876 32111 122244444443 4999999999999998877532
Q ss_pred -----CCC---CC---hHHHHHHHHhhh-----CCChhHHHHHHHHHHHHhhhh-hcCCCCHHH----HHHHHHhhccCC
Q 000319 331 -----PSR---AD---APQILTALCDRL-----LDFDENVRKQVVAVICDVACH-ALNSIPVET----VKLVAERLRDKS 389 (1674)
Q Consensus 331 -----p~~---~~---~~eIi~~L~~rL-----~D~DEkVR~aaV~ai~~la~~-~l~~V~~el----L~~LaeR~RDKK 389 (1674)
+.. .. ...++..+...| ...+-.+=.+.++++..+... .++.++.++ +..+..+++.+.
T Consensus 79 e~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d 158 (182)
T PF13251_consen 79 EESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRD 158 (182)
T ss_pred HhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCC
Confidence 110 11 123444444433 455666777888888777653 356677765 557888999999
Q ss_pred hhHHHHHHHHHHHHHHH
Q 000319 390 VLVKRYTMERLADIFRG 406 (1674)
Q Consensus 390 ~~VRkeAm~~La~LY~~ 406 (1674)
+.||..++..++-+...
T Consensus 159 ~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 159 PNVRVAALSCLGALLSV 175 (182)
T ss_pred CcHHHHHHHHHHHHHcC
Confidence 99999999999988764
No 134
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins []. Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....
Probab=56.97 E-value=23 Score=35.43 Aligned_cols=48 Identities=17% Similarity=0.139 Sum_probs=39.2
Q ss_pred CcccccceEEEecCCCCceEEEEEEeecCCCCeeEEEc-cCCcceeeecc
Q 000319 1372 IEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILY-DDEDVEVLRLD 1420 (1674)
Q Consensus 1372 ~~~lvG~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~Y-dDgd~E~l~L~ 1420 (1674)
....+|..+-+.=+.|..||.|.| ..+...+.-.|.| |-|..+.+...
T Consensus 50 ~~~~~~~~~~~~~~~~~~w~Ra~I-~~~~~~~~~~V~~iD~G~~~~v~~~ 98 (121)
T PF00567_consen 50 PESNPGEGCLCVVSEDGRWYRAVI-TVDIDENQYKVFLIDYGNTEKVSAS 98 (121)
T ss_dssp ST--TTEEEEEEETTTSEEEEEEE-EEEECTTEEEEEETTTTEEEEEEGG
T ss_pred cccccCCEEEEEEecCCceeeEEE-EEecccceeEEEEEecCceEEEcHH
Confidence 445588888888899999999999 7777788889998 99999997665
No 135
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=55.19 E-value=13 Score=49.36 Aligned_cols=46 Identities=24% Similarity=0.508 Sum_probs=36.9
Q ss_pred ccccceEEEecCCC----CceEEEEEEeecCCC--------CeeEEEccCCcceeeec
Q 000319 1374 DLIGYRIKVWWPMD----KQFYEGTIKSYDPIK--------KKHVILYDDEDVEVLRL 1419 (1674)
Q Consensus 1374 ~lvG~rv~V~Wp~D----~~~Y~G~V~~y~~~~--------~~H~v~YdDgd~E~l~L 1419 (1674)
.-.+-+|||||-+. .+|++|+|-+.-|.. .+..|+||.|+.|.+.=
T Consensus 979 W~~~d~crvwwrda~~e~g~WWeG~ils~~pksp~fpdSpwery~v~~~~~e~~~~sp 1036 (1113)
T KOG0644|consen 979 WTCRDKCRVWWRDAGEEDGAWWEGRILSVKPKSPDFPDSPWERYIVRYDNTETELHSP 1036 (1113)
T ss_pred cccccceeEEEccCCCcCCceeeeeeeeccCCCCCCCCCcceeEEEEecCCcccccCc
Confidence 34788999999764 789999999987655 46899999997776554
No 136
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=55.07 E-value=1.1e+02 Score=40.27 Aligned_cols=122 Identities=16% Similarity=0.162 Sum_probs=67.6
Q ss_pred hhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccccchHHHHHHHHHhhcchhhhhhc
Q 000319 599 KEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAA 678 (1674)
Q Consensus 599 ks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v~~Li~lL~~~~~~~~~~aLkiLak~~k~i~e~~~~ 678 (1674)
..|.......+...+.+. ..-.-|..++--.-+.||++=...+..++++++|++..+.-.+++.|-.+++.-++..
T Consensus 19 ~~~~~~y~~il~~~kg~~--k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v-- 94 (556)
T PF05918_consen 19 SQHEEDYKEILDGVKGSP--KEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHV-- 94 (556)
T ss_dssp GGGHHHHHHHHHGGGS-H--HHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-H--
T ss_pred ccCHHHHHHHHHHccCCH--HHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHH--
Confidence 345554444444444332 2234456777778888899888888999999998877666677777766554422222
Q ss_pred ccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHHHHHH
Q 000319 679 TSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLV 726 (1674)
Q Consensus 679 ~~s~l~~~L~~lal~Gtp~qAKyAvr~Laa~~~~~~~~~~~~L~~~L~ 726 (1674)
+.+..+|..+=....+.+....-.+|+.+.+.+-..++..|+..|.
T Consensus 95 --~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~ 140 (556)
T PF05918_consen 95 --SKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIE 140 (556)
T ss_dssp --HHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3466667666555666666666666655554443344455555554
No 137
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=53.86 E-value=1.4e+02 Score=39.30 Aligned_cols=83 Identities=14% Similarity=0.179 Sum_probs=52.1
Q ss_pred CChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCC
Q 000319 270 DQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLD 349 (1674)
Q Consensus 270 ed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~~~eIi~~L~~rL~D 349 (1674)
-+.....+|-+.+.+.|.. |..--...+++.|.=+-|-++.||+..++..+.+-..+|. ..+-|.+.|...|.
T Consensus 34 g~~k~K~Laaq~I~kffk~----FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~--~v~kvaDvL~QlL~- 106 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKH----FPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE--HVSKVADVLVQLLQ- 106 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-----GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T---HHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHHHhh----ChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH--HHhHHHHHHHHHHh-
Confidence 3566777888888888864 5555567788888888888888888888888887776664 35677777777666
Q ss_pred ChhHHHHHHH
Q 000319 350 FDENVRKQVV 359 (1674)
Q Consensus 350 ~DEkVR~aaV 359 (1674)
+|+.+=+.+|
T Consensus 107 tdd~~E~~~v 116 (556)
T PF05918_consen 107 TDDPVELDAV 116 (556)
T ss_dssp ---HHHHHHH
T ss_pred cccHHHHHHH
Confidence 5554444433
No 138
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=53.44 E-value=3.5e+02 Score=31.55 Aligned_cols=129 Identities=17% Similarity=0.055 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhhCCcCccccHHHHHHHHhhc------cccchHHHHHHHHHhhcchhhhhhcccchHHHHHHHHh-hc
Q 000319 621 MQSCMDILGILARFSPLLLGGTEEELVNLLKEE------NEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLC-LE 693 (1674)
Q Consensus 621 ~~~a~eLL~~IS~~~P~lFk~~v~~Li~lL~~~------~~~~~~~aLkiLak~~k~i~e~~~~~~s~l~~~L~~la-l~ 693 (1674)
...++++|..+-...|..| +..+.++..+.-. +.......+-.++..-..+....+.....+...+..++ -.
T Consensus 55 ~~~~~rLl~~lw~~~~r~f-~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~~~ 133 (234)
T PF12530_consen 55 RYVALRLLTLLWKANDRHF-PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGVDLLPLLSGCLNQS 133 (234)
T ss_pred HHHHHHHHHHHHHhCchHH-HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcc
Confidence 3467899999999999999 4555554441111 11111122222222222233333333445777777777 56
Q ss_pred CChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhhcCCCchHHHHHHHHHhhcccc
Q 000319 694 GSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPV 752 (1674)
Q Consensus 694 Gtp~qAKyAvr~Laa~~~~~~~~~~~~L~~~L~~~L~~~~~l~t~L~sL~~Iaq~ap~v 752 (1674)
..+..+-+|+.+|..+...+ ...+....+-|...+ ....-|..+.+|..++.+.|..
T Consensus 134 ~~~~~~alale~l~~Lc~~~-vvd~~s~w~vl~~~l-~~~~rp~v~~~l~~l~~l~~~~ 190 (234)
T PF12530_consen 134 CDEVAQALALEALAPLCEAE-VVDFYSAWKVLQKKL-SLDYRPLVLKSLCSLFALVPQG 190 (234)
T ss_pred ccHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHhc-CCccchHHHHHHHHHHHHhccc
Confidence 67778889999999888653 233333455555555 2246788899999999987744
No 139
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=52.87 E-value=53 Score=36.94 Aligned_cols=70 Identities=14% Similarity=0.180 Sum_probs=58.1
Q ss_pred HHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHH
Q 000319 337 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 407 (1674)
Q Consensus 337 ~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VRkeAm~~La~LY~~~ 407 (1674)
+.-++.+.+...++|..||..|+..+.-+....+-+ |.+.+-+|.-..-|....||..|...+..+...|
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvn-P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLVN-PKQCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCC-hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 445677778899999999999999997766544432 6677888888899999999999999999999987
No 140
>KOG2393 consensus Transcription initiation factor IIF, large subunit (RAP74) [Transcription]
Probab=51.80 E-value=33 Score=43.93 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=13.6
Q ss_pred cccccCCCCCCcccccCCCCCCCCC
Q 000319 1568 DEVDKMDSEEKPAEEVGSVPQDEKS 1592 (1674)
Q Consensus 1568 ~~~~~~~~~~~~~~~~~~~~~~~~~ 1592 (1674)
++++..+|++. +.|-|-.||-.+.
T Consensus 292 ~e~~E~DYdee-~addEE~Peik~d 315 (555)
T KOG2393|consen 292 NEGRELDYDEE-SADDEEAPEIKGD 315 (555)
T ss_pred ccccccccccc-cCCcccccccccc
Confidence 34455667777 5555555665553
No 141
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.40 E-value=8.9e+02 Score=34.00 Aligned_cols=86 Identities=14% Similarity=0.127 Sum_probs=60.1
Q ss_pred HHHHHHhhcc--hhhhh-hhhcccccccCCChHHHHHHHHHHHHhhcCC---CCCchhhcHHHHHHHHhhhcCCChhHHH
Q 000319 244 VIYDVYRCSP--QILSG-VVPYLTGELLTDQLDTRLKAVGLVGDLFAVP---GSANNEQFHSVFSEFLKRLTDRIVAVRM 317 (1674)
Q Consensus 244 Li~eL~~~~P--~lL~~-ViP~Le~EL~sed~~~Rl~At~llG~mfs~~---~~~~a~~y~~~w~~fL~R~~D~s~~VR~ 317 (1674)
|..-|-+-+| +.+-. +.+++-.++++.---+|..|..+++..=+.. ..++.+.+..+.++++. |.+-+||+
T Consensus 445 l~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~---d~~lPV~V 521 (1010)
T KOG1991|consen 445 LASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLN---DNELPVRV 521 (1010)
T ss_pred HHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcc---CCcCchhh
Confidence 4444455577 44333 4455555677888899999999999654221 24677788888887775 89999999
Q ss_pred HHHHHhHHHHhcCCC
Q 000319 318 SVLEHVKSCLLTDPS 332 (1674)
Q Consensus 318 ~~ve~~~~iL~s~p~ 332 (1674)
+.+-+...++.+.+.
T Consensus 522 eAalALq~fI~~~~~ 536 (1010)
T KOG1991|consen 522 EAALALQSFISNQEQ 536 (1010)
T ss_pred HHHHHHHHHHhcchh
Confidence 999888777776553
No 142
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=51.16 E-value=3.3e+02 Score=37.32 Aligned_cols=139 Identities=21% Similarity=0.229 Sum_probs=103.3
Q ss_pred hhhhhcccccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhc-CCCCCC
Q 000319 257 SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT-DPSRAD 335 (1674)
Q Consensus 257 ~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s-~p~~~~ 335 (1674)
+.|+|.+.+-+.-+...+|..|+..++.++..-..+. ..+......++.-..|.+..||-...+....+... -|+. .
T Consensus 275 s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~-d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~-~ 352 (759)
T KOG0211|consen 275 SEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD-DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSA-T 352 (759)
T ss_pred hhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcccc-C
Confidence 3467777776777789999999999998887644332 77788889999999999999998877776553332 1222 2
Q ss_pred hHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh----cCCCCH-HHHHHHHHhhccCChhHHHHHH
Q 000319 336 APQILTALCDRLLDFDENVRKQVVAVICDVACHA----LNSIPV-ETVKLVAERLRDKSVLVKRYTM 397 (1674)
Q Consensus 336 ~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~----l~~V~~-elL~~LaeR~RDKK~~VRkeAm 397 (1674)
..+....+..-+.|..+.||.++-.-+..+++.- .-.++. .+|-.+-.-+-|....||....
T Consensus 353 ~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a 419 (759)
T KOG0211|consen 353 RTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALA 419 (759)
T ss_pred cccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHh
Confidence 2367888889999999999999888888877632 233444 3567788888999999887643
No 143
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=50.11 E-value=39 Score=30.56 Aligned_cols=43 Identities=19% Similarity=0.252 Sum_probs=33.2
Q ss_pred ccceEEEecCCCCceEEEEEEeecCCCC--eeEEEccCCc---ceeeec
Q 000319 1376 IGYRIKVWWPMDKQFYEGTIKSYDPIKK--KHVILYDDED---VEVLRL 1419 (1674)
Q Consensus 1376 vG~rv~V~Wp~D~~~Y~G~V~~y~~~~~--~H~v~YdDgd---~E~l~L 1419 (1674)
||.+|.+.| .+..||.++|..-....+ ...|.|..=+ .||+..
T Consensus 3 vG~~v~~~~-~~~~~y~A~I~~~r~~~~~~~YyVHY~g~nkR~DeWV~~ 50 (55)
T PF11717_consen 3 VGEKVLCKY-KDGQWYEAKILDIREKNGEPEYYVHYQGWNKRLDEWVPE 50 (55)
T ss_dssp TTEEEEEEE-TTTEEEEEEEEEEEECTTCEEEEEEETTSTGCC-EEEET
T ss_pred cCCEEEEEE-CCCcEEEEEEEEEEecCCCEEEEEEcCCCCCCceeeecH
Confidence 899999999 999999999999988654 4667776443 455544
No 144
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.98 E-value=86 Score=38.08 Aligned_cols=162 Identities=13% Similarity=0.115 Sum_probs=116.9
Q ss_pred hHHHHHHHHHhhcchhhhh----hhhcccccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhH
Q 000319 240 DYHEVIYDVYRCSPQILSG----VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAV 315 (1674)
Q Consensus 240 ~~h~Li~eL~~~~P~lL~~----ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~V 315 (1674)
+....|..|-.+.|+.|.+ ||.++-.+|..-.-.+=..|+.++++||+.-+.-+.+.-..+-...|.|..+-..=|
T Consensus 107 dgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFv 186 (334)
T KOG2933|consen 107 DGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFV 186 (334)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHH
Confidence 4566777788888876654 899999999999999999999999999998766666777888889999988877888
Q ss_pred HHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcC------CCCHHHHHHHHHhhccCC
Q 000319 316 RMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN------SIPVETVKLVAERLRDKS 389 (1674)
Q Consensus 316 R~~~ve~~~~iL~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~------~V~~elL~~LaeR~RDKK 389 (1674)
|...-++.-... +|-. ..-++..|.-.+.-+..+||..++..+.... ..+. ....++...+++-++||=
T Consensus 187 reda~kAL~aMV-~~vt---p~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v-~rl~v~~~~~~~~~dl~~a~~~~~~d~L 261 (334)
T KOG2933|consen 187 REDAEKALVAMV-NHVT---PQKLLRKLIPILQHSNPRVRAKAALCFSRCV-IRLGVLPVLLQGSCDLSRAAQEQGSDKL 261 (334)
T ss_pred HHHHHHHHHHHH-hccC---hHHHHHHHHHHHhhhchhhhhhhhccccccc-eeccccchhhHhHHHHHHHHHhhhcccc
Confidence 887777665433 2321 2467888888899999999998544432111 1111 123355678999999999
Q ss_pred hhHHHHHHHHHHHHHHH
Q 000319 390 VLVKRYTMERLADIFRG 406 (1674)
Q Consensus 390 ~~VRkeAm~~La~LY~~ 406 (1674)
+.+|+.|=-.+..+..+
T Consensus 262 p~~~~~a~~~~~~~~~v 278 (334)
T KOG2933|consen 262 PELREAARFVRLELKEV 278 (334)
T ss_pred cccccchhHHHHhHHHH
Confidence 99996554444444433
No 145
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=47.70 E-value=5.6e+02 Score=30.63 Aligned_cols=63 Identities=16% Similarity=0.289 Sum_probs=43.3
Q ss_pred HHHHhhhCCChhHHHHHHHHHHHHhhhhhc-CCCCHH----HHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 000319 341 TALCDRLLDFDENVRKQVVAVICDVACHAL-NSIPVE----TVKLVAERLRDKSVLVKRYTMERLADIFR 405 (1674)
Q Consensus 341 ~~L~~rL~D~DEkVR~aaV~ai~~la~~~l-~~V~~e----lL~~LaeR~RDKK~~VRkeAm~~La~LY~ 405 (1674)
+.|...|.+.|+.+|..++..++.+...-. ..++.+ ++..+.+|+.|.. .|.- |+.+|..|.+
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~-~~~~-~l~gl~~L~~ 69 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHA-CVQP-ALKGLLALVK 69 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHh-hHHH-HHHHHHHHHh
Confidence 467889999999999999999887765443 223332 3467778886653 3333 3777777774
No 146
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=47.40 E-value=1.1e+03 Score=33.99 Aligned_cols=125 Identities=10% Similarity=0.035 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCC-CChHHHHHHHHhhhCCChh
Q 000319 274 TRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR-ADAPQILTALCDRLLDFDE 352 (1674)
Q Consensus 274 ~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~-~~~~eIi~~L~~rL~D~DE 352 (1674)
.+.++.+.|-.++- .+++++...+.|..--++.|-..+-.....++...+.. ....+|+....-.+.|++.
T Consensus 486 ~~~lgr~AL~nLL~--------~N~dLl~~~IdrCYss~~~va~gYF~vlaev~~~~~~~~~~~~~LL~L~Lfklg~~~~ 557 (1120)
T PF14228_consen 486 RHSLGRRALKNLLE--------HNPDLLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREYPPCPFWELLNLVLFKLGDESS 557 (1120)
T ss_pred HHHHHHHHHHHHHH--------hhHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCCCCCCHHHhHHHHHHhhcCCcH
Confidence 34555666655554 34568888888888888888777777777777655432 2345777777778899999
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000319 353 NVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 406 (1674)
Q Consensus 353 kVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VRkeAm~~La~LY~~ 406 (1674)
.||..|++-+.-+....+..-..+-...+-+.+.++-+.|-+.|...|++....
T Consensus 558 eIR~~A~qLL~~Le~R~~~~s~~~~~~~f~~si~s~l~~vYk~aQ~eLS~~LA~ 611 (1120)
T PF14228_consen 558 EIRSKAMQLLRALEERFFSSSGSEKSGDFRESISSKLPAVYKKAQFELSKRLAK 611 (1120)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccceehhccCCcHHHHHHHHHHHHHHHHH
Confidence 999998888877765544332212222233556666666666666555555544
No 147
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=46.03 E-value=1.1e+02 Score=39.97 Aligned_cols=130 Identities=17% Similarity=0.131 Sum_probs=90.2
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHH--H----hhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHH
Q 000319 268 LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEF--L----KRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILT 341 (1674)
Q Consensus 268 ~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~f--L----~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~~~eIi~ 341 (1674)
..-+..+|..++.-++.-+.. +|+.|..- | .=..|.+..||...++-...+...+|...-..+..+
T Consensus 285 ~Dv~d~IRv~c~~~L~dwi~l--------vP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~e 356 (740)
T COG5537 285 IDVDDVIRVLCSMSLRDWIGL--------VPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVE 356 (740)
T ss_pred cchhHHHHHHHHHHHHHHHhc--------chHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 345678899999999987753 34443321 1 125799999999999999988888887654455665
Q ss_pred HHHhh-----hCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChh---HHHHHHHHHHHHHHHHh
Q 000319 342 ALCDR-----LLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVL---VKRYTMERLADIFRGCC 408 (1674)
Q Consensus 342 ~L~~r-----L~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~---VRkeAm~~La~LY~~~~ 408 (1674)
-+..| ..|.|= ||..+++..|.+.. +..++..-+-.+.-.|-|=++. +|.++...++++-....
T Consensus 357 RFk~rILE~~r~D~d~-VRi~sik~l~~lr~--lg~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK~~aevi 428 (740)
T COG5537 357 RFKDRILEFLRTDSDC-VRICSIKSLCYLRI--LGVLSSSEILIVSSCMLDIIPDSRENIVESVESICKIDAEVI 428 (740)
T ss_pred HHHHHHHHHHhhccch-hhHHHHHHHHHHHH--hcccchhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHH
Confidence 55554 578888 99999999877543 3344444444445557887776 77788887777766554
No 148
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.56 E-value=9.8e+02 Score=32.79 Aligned_cols=153 Identities=16% Similarity=0.197 Sum_probs=102.7
Q ss_pred hhhhhhhhcccccccCCChHHHHHHHHHHHHhhcCCCCCc-hhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCC
Q 000319 254 QILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSAN-NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPS 332 (1674)
Q Consensus 254 ~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~-a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~ 332 (1674)
+++-.|+|++|..++++|=..|-.|+-.+|-++-+|..+- ..-=+..-..-+.-..|.+.-||-.---..+.|.-..|+
T Consensus 360 ~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e 439 (859)
T KOG1241|consen 360 DIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPE 439 (859)
T ss_pred cchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchh
Confidence 3555799999999999999999999999999998885331 111133344445556688888886555555666655543
Q ss_pred C----CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCH------------HHHH---HHHHhhccCChhHH
Q 000319 333 R----ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV------------ETVK---LVAERLRDKSVLVK 393 (1674)
Q Consensus 333 ~----~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~------------elL~---~LaeR~RDKK~~VR 393 (1674)
. ...+.++..|..=|+| ..+|=..+|-++..++.......+. .++. .+++|.-=--...|
T Consensus 440 ~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR 518 (859)
T KOG1241|consen 440 AIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLR 518 (859)
T ss_pred hcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHH
Confidence 1 1123556677777776 5788888999988887433222211 1222 34455544457899
Q ss_pred HHHHHHHHHHHHHH
Q 000319 394 RYTMERLADIFRGC 407 (1674)
Q Consensus 394 keAm~~La~LY~~~ 407 (1674)
..|-+.|+.+-+..
T Consensus 519 ~AAYeALmElIk~s 532 (859)
T KOG1241|consen 519 SAAYEALMELIKNS 532 (859)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999998843
No 149
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=43.91 E-value=1.7e+02 Score=35.89 Aligned_cols=107 Identities=17% Similarity=0.217 Sum_probs=72.7
Q ss_pred HHHhhcchhhhhhhhcccccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHH
Q 000319 247 DVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSC 326 (1674)
Q Consensus 247 eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~i 326 (1674)
.|.-+.+.+|.+++|-||+| +.+.=..+.+++-.+-..-+.. --|..+|.+.+ .+|.+|...+.++..-
T Consensus 131 ~L~p~l~~li~slLpGLede----~sE~~~~~~~ll~~l~~~v~~~--~F~~~lwl~ii-----~sp~~Rl~al~~l~~~ 199 (307)
T PF04118_consen 131 ALRPCLKGLILSLLPGLEDE----GSEFFDRTLKLLDKLKEAVGDK--YFWQCLWLCII-----TSPSRRLGALNYLLRR 199 (307)
T ss_pred HHHHHHHHHHHHhccccccC----CchHHHHHHHHHHHHHHhcChh--HHHHHHHHHHh-----cCcchhHHHHHHHHHh
Confidence 56678899999999999985 3333334455555444432322 34567888877 6899999988887654
Q ss_pred HhcCC------C--------CCChHHHHHHHHhhhCCChhHHHHHHHHHHHH
Q 000319 327 LLTDP------S--------RADAPQILTALCDRLLDFDENVRKQVVAVICD 364 (1674)
Q Consensus 327 L~s~p------~--------~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~ 364 (1674)
+-... . ..+..-++.+|+..|.|.+.-|++.+...+..
T Consensus 200 l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~ 251 (307)
T PF04118_consen 200 LPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLS 251 (307)
T ss_pred CCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 43211 0 12233577999999999999999997777644
No 150
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=43.11 E-value=7.5e+02 Score=30.76 Aligned_cols=110 Identities=12% Similarity=0.193 Sum_probs=69.4
Q ss_pred hHHHHHHHHHhhcchhhhh--------hhhcccccccCCChHHHHHHHHHHHHhhcCCC-CCchhhc---HHHHHHHHhh
Q 000319 240 DYHEVIYDVYRCSPQILSG--------VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG-SANNEQF---HSVFSEFLKR 307 (1674)
Q Consensus 240 ~~h~Li~eL~~~~P~lL~~--------ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~-~~~a~~y---~~~w~~fL~R 307 (1674)
++..-+.+|....+.+... ++.....-|.++|=-+|..++++||+++..+. .+++..| |+-....+.=
T Consensus 183 daf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~l 262 (335)
T PF08569_consen 183 DAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNL 262 (335)
T ss_dssp HHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHH
Confidence 4555555555555555433 33455666889999999999999999999864 2234444 8888888899
Q ss_pred hcCCChhHHHHHHHHhHHHHhcCCCCCC-h--------HHHHHHHHhhhCCC
Q 000319 308 LTDRIVAVRMSVLEHVKSCLLTDPSRAD-A--------PQILTALCDRLLDF 350 (1674)
Q Consensus 308 ~~D~s~~VR~~~ve~~~~iL~s~p~~~~-~--------~eIi~~L~~rL~D~ 350 (1674)
..|++..||.+...-- .+..+||.... + ..++..|.+-..|.
T Consensus 263 L~d~sk~Iq~eAFhvF-KvFVANp~K~~~I~~iL~~Nr~kLl~fl~~f~~~~ 313 (335)
T PF08569_consen 263 LRDKSKNIQFEAFHVF-KVFVANPNKPPPIVDILIKNREKLLRFLKDFHTDR 313 (335)
T ss_dssp TT-S-HHHHHHHHHHH-HHHHH-SS-BHHHHHHHHHTHHHHHHHHHTTTTT-
T ss_pred hcCcchhhhHHHHHHH-HHHHhCCCCChHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999986544 45566775321 1 13345555555665
No 151
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=43.09 E-value=14 Score=49.16 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=16.6
Q ss_pred ChhHHhHhHHHHHHHHHHhhhc
Q 000319 839 SSVDKAHLRLASAKAVLRLSRQ 860 (1674)
Q Consensus 839 p~~~ksrLRLaAa~~LLKLAr~ 860 (1674)
|....--+|-.|.+.|+-|||.
T Consensus 753 P~t~aD~IRalAc~~L~GLaR~ 774 (1516)
T KOG1832|consen 753 PPTTADCIRALACRVLLGLARD 774 (1516)
T ss_pred CCCcHHHHHHHHHHHHhccccC
Confidence 5566667788888888888875
No 152
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.79 E-value=5e+02 Score=33.71 Aligned_cols=251 Identities=13% Similarity=0.067 Sum_probs=0.0
Q ss_pred cccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcC--CCCCChHHHHHHH
Q 000319 266 ELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD--PSRADAPQILTAL 343 (1674)
Q Consensus 266 EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~--p~~~~~~eIi~~L 343 (1674)
++.+++.--|..+|++=..|--..+.++.. +-..++.-..--.+.=|+..+-++..+.... +++.....++-.+
T Consensus 188 ~qls~~~~h~~g~trlqr~m~~~~~~~~~~----il~q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~l 263 (533)
T KOG2032|consen 188 SQLSDNDIHRVGLTRLQRFMACVQDLEMGK----ILAQLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSL 263 (533)
T ss_pred hhcccCcccHHHHHHHHHHHHhhCCccHHH----HHhhcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHH
Q ss_pred HhhhCCChhHHHHHHHHHHHHhhhhhcCCC----CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCcccc
Q 000319 344 CDRLLDFDENVRKQVVAVICDVACHALNSI----PVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQN 419 (1674)
Q Consensus 344 ~~rL~D~DEkVR~aaV~ai~~la~~~l~~V----~~elL~~LaeR~RDKK~~VRkeAm~~La~LY~~~~~~~~~~~~~~~ 419 (1674)
..|..||+.++|..|+..++.++...++.| +.-+...+....-|=+.+|--+||.+|..+-... .+.....
T Consensus 264 a~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~-----~~~~l~~ 338 (533)
T KOG2032|consen 264 ANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA-----SNDDLES 338 (533)
T ss_pred HHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh-----hhcchhh
Q ss_pred ccccchHHHhhhhccCCCCchhHHHHhhcCCcCCCCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--
Q 000319 420 EFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSV---------KDRVRHWVRIFSGFDRIEMKALEKILEQKQR-- 488 (1674)
Q Consensus 420 ~~~wIPskIL~~~Y~nD~~~~lVE~vL~e~LlP~~~~~---------~~R~~~ll~l~~~LD~~~~kal~~il~~k~~-- 488 (1674)
-|--|--++-..+-..+..-..--.++|+.|.|+.--. ..|-..++-...+..+.--+|+...+..-.-
T Consensus 339 ~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l 418 (533)
T KOG2032|consen 339 YLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNL 418 (533)
T ss_pred hchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchh
Q ss_pred HHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCC
Q 000319 489 LQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAE 528 (1674)
Q Consensus 489 l~~~~~~~l~l~~~~~~~d~~ei~~kL~~~I~~Ls~~fPD 528 (1674)
.+.+...|++-.. +.+.+..+.=++.....+...+||
T Consensus 419 ~rke~~~~~q~~l---d~~~~~~q~Fyn~~c~~L~~i~~d 455 (533)
T KOG2032|consen 419 VRKELYHLFQESL---DTDMARFQAFYNQWCIQLNHIHPD 455 (533)
T ss_pred HHHHHHHHHhhhh---HHhHHHHHHHHHHHHHHHhhhCHH
No 153
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=42.76 E-value=98 Score=41.29 Aligned_cols=88 Identities=18% Similarity=0.202 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHH-HHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChh
Q 000319 274 TRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMS-VLEHVKSCLLTDPSRADAPQILTALCDRLLDFDE 352 (1674)
Q Consensus 274 ~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~-~ve~~~~iL~s~p~~~~~~eIi~~L~~rL~D~DE 352 (1674)
.|=+|+-+---||+..+ ...++.++.+ .|++|-+|.. |...+-...-+. ...-|-.-|.--..|.++
T Consensus 502 ~RGl~vGiaL~~ygrqe-----~Ad~lI~el~---~dkdpilR~~Gm~t~alAy~GTg----nnkair~lLh~aVsD~nD 569 (929)
T KOG2062|consen 502 IRGLAVGIALVVYGRQE-----DADPLIKELL---RDKDPILRYGGMYTLALAYVGTG----NNKAIRRLLHVAVSDVND 569 (929)
T ss_pred HHHHHHhHHHHHhhhhh-----hhHHHHHHHh---cCCchhhhhhhHHHHHHHHhccC----chhhHHHhhcccccccch
Confidence 46666665555665543 2233444433 4678888876 333222222221 112344455555778888
Q ss_pred HHHHHHHHHHHHhhhhhcCCC
Q 000319 353 NVRKQVVAVICDVACHALNSI 373 (1674)
Q Consensus 353 kVR~aaV~ai~~la~~~l~~V 373 (1674)
.||++||.+|+-+.+.+++.+
T Consensus 570 DVrRaAVialGFVl~~dp~~~ 590 (929)
T KOG2062|consen 570 DVRRAAVIALGFVLFRDPEQL 590 (929)
T ss_pred HHHHHHHHHheeeEecChhhc
Confidence 888888888877766665544
No 154
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=42.02 E-value=1.5e+02 Score=33.61 Aligned_cols=98 Identities=14% Similarity=0.149 Sum_probs=71.5
Q ss_pred ccCCChHHHHHHHHHHHHhhcCCCC-------------Cc-----------hhhcHHHHHHHHhhhcCCChhHHHHHHHH
Q 000319 267 LLTDQLDTRLKAVGLVGDLFAVPGS-------------AN-----------NEQFHSVFSEFLKRLTDRIVAVRMSVLEH 322 (1674)
Q Consensus 267 L~sed~~~Rl~At~llG~mfs~~~~-------------~~-----------a~~y~~~w~~fL~R~~D~s~~VR~~~ve~ 322 (1674)
|...+..+|..|..++.-|+.+... +| .+-|..+.... -...++.+=.+++++
T Consensus 49 l~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L---~~E~~~~~l~q~lK~ 125 (182)
T PF13251_consen 49 LKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLAL---QAEKSPPVLTQLLKC 125 (182)
T ss_pred HcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHH---hcccccHHHHHHHHH
Confidence 4567899999999999999977521 11 23344444333 234567788899999
Q ss_pred hHHHHhcCCCC----CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhh
Q 000319 323 VKSCLLTDPSR----ADAPQILTALCDRLLDFDENVRKQVVAVICDVAC 367 (1674)
Q Consensus 323 ~~~iL~s~p~~----~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~ 367 (1674)
+..++.+-|.. .....++..+..++...|..||.++.-+++-+..
T Consensus 126 la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 126 LAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 98888777753 4456777888999999999999998888776543
No 155
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.97 E-value=98 Score=41.07 Aligned_cols=120 Identities=22% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHhh------cchhhhhhhhcccccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhH
Q 000319 242 HEVIYDVYRC------SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAV 315 (1674)
Q Consensus 242 h~Li~eL~~~------~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~V 315 (1674)
|.+++|.-.. .|+++...+-+|-.-|.+-+..+|-+|.+.+.+|.+...+.=+..|. .=.-+..=..+++++|
T Consensus 307 naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h-~d~Ii~sLkterDvSi 385 (938)
T KOG1077|consen 307 NAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH-QDTIINSLKTERDVSI 385 (938)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH-HHHHHHHhccccchHH
Q ss_pred HHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhh
Q 000319 316 RMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVA 366 (1674)
Q Consensus 316 R~~~ve~~~~iL~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la 366 (1674)
|...|+. |-.-.++.-+.+|+..|..-|.-.|--+|-+.|--+.=+|
T Consensus 386 rrravDL----LY~mcD~~Nak~IV~elLqYL~tAd~sireeivlKvAILa 432 (938)
T KOG1077|consen 386 RRRAVDL----LYAMCDVSNAKQIVAELLQYLETADYSIREEIVLKVAILA 432 (938)
T ss_pred HHHHHHH----HHHHhchhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
No 156
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=40.94 E-value=1.7e+02 Score=35.82 Aligned_cols=129 Identities=20% Similarity=0.255 Sum_probs=85.7
Q ss_pred ChHHHHH---HHHHHHHhhcCC-CCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCCh--------HH
Q 000319 271 QLDTRLK---AVGLVGDLFAVP-GSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADA--------PQ 338 (1674)
Q Consensus 271 d~~~Rl~---At~llG~mfs~~-~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~~--------~e 338 (1674)
|+..|-. .|..|-|+|... |..++..|....+.=|. .| +..|.+..++.++.||.+. +.... .+
T Consensus 53 NenhrekttlcVscLERLfkakegahlapnlmpdLQrGLi--ad-dasVKiLackqigcilEdc-DtnaVseillvvNae 128 (524)
T KOG4413|consen 53 NENHREKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLI--AD-DASVKILACKQIGCILEDC-DTNAVSEILLVVNAE 128 (524)
T ss_pred cccccchhhhHHHHHHHHHhhccchhhchhhhHHHHhccc--CC-cchhhhhhHhhhhHHHhcC-chhhHHHHHHHhhhh
Confidence 4444444 788899999765 56677777666664443 33 7788888888887766643 32222 25
Q ss_pred HHHHHHhhhCCChhHHHHHHHHHHHHhhhhh--cCCC-CHH-----HHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000319 339 ILTALCDRLLDFDENVRKQVVAVICDVACHA--LNSI-PVE-----TVKLVAERLRDKSVLVKRYTMERLADIFRG 406 (1674)
Q Consensus 339 Ii~~L~~rL~D~DEkVR~aaV~ai~~la~~~--l~~V-~~e-----lL~~LaeR~RDKK~~VRkeAm~~La~LY~~ 406 (1674)
|.+.+..++.-.|+.|-.+|++.|..++.+. ++.+ +.+ -+..|+.|+-| -+|-...+.+-+||..
T Consensus 129 ilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcnd---iaRvRVleLIieifSi 201 (524)
T KOG4413|consen 129 ILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCND---IARVRVLELIIEIFSI 201 (524)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhh---HHHHHHHHHHHHHHhc
Confidence 6678888999999999999999999988632 3221 222 35567777754 4565556666666654
No 157
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=39.06 E-value=18 Score=48.29 Aligned_cols=22 Identities=32% Similarity=0.241 Sum_probs=15.8
Q ss_pred hhcccccccCccccccCCCCCC
Q 000319 1178 REINLDNLGVLNKFESSNGHKH 1199 (1674)
Q Consensus 1178 ~~~~~~~~~~~~~~~~~~~~~~ 1199 (1674)
-||-+=|+-.-..-++-|+|-+
T Consensus 1123 Geik~~nv~sG~~e~s~ncH~S 1144 (1516)
T KOG1832|consen 1123 GEIKIFNVSSGSMEESVNCHQS 1144 (1516)
T ss_pred ceEEEEEccCcccccccccccc
Confidence 4666667777777888899943
No 158
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.69 E-value=3.7e+02 Score=33.53 Aligned_cols=146 Identities=15% Similarity=0.174 Sum_probs=107.5
Q ss_pred hhhhhcccccccCCChHHHHHHHHHHHHhhcCCC--CCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCC
Q 000319 257 SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG--SANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRA 334 (1674)
Q Consensus 257 ~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~--~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~~ 334 (1674)
.+-+|.|-.-|.+.|.++|--+|..+|.+--... --++++-|-+-.+...=+.|-++.|.++..-+... |.+.. .
T Consensus 207 aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrn-lasdt--~ 283 (550)
T KOG4224|consen 207 AGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRN-LASDT--E 283 (550)
T ss_pred cCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhh-hcccc--h
Confidence 3578888889999999999999999997654421 23678888999999999999999998877666543 33322 2
Q ss_pred ChHHHH-----HHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCH---HHHHHHHHhhccCChh-HHHHHHHHHHHHHH
Q 000319 335 DAPQIL-----TALCDRLLDFDENVRKQVVAVICDVACHALNSIPV---ETVKLVAERLRDKSVL-VKRYTMERLADIFR 405 (1674)
Q Consensus 335 ~~~eIi-----~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~---elL~~LaeR~RDKK~~-VRkeAm~~La~LY~ 405 (1674)
-..+|+ ..+-+.|.|+--..=++.|..|..++.+.++.++. -+|+-|...+|=+... +...|..+|-+|-.
T Consensus 284 Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAa 363 (550)
T KOG4224|consen 284 YQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAA 363 (550)
T ss_pred hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhh
Confidence 223444 46777788888888889999998899888886543 4666666666666554 88888777766544
No 159
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=38.57 E-value=2.1e+02 Score=35.24 Aligned_cols=137 Identities=20% Similarity=0.297 Sum_probs=0.0
Q ss_pred hhcccccccCCChHHHHHHHHHHHHhhcCCCCC-----chhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcC-CCC
Q 000319 260 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA-----NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD-PSR 333 (1674)
Q Consensus 260 iP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~-----~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~-p~~ 333 (1674)
+|+|...|-++|.+.-+.||--+-+++|...+. +..---+-|.+|+. ++--.|+++-..-.++| .++
T Consensus 73 lp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~-------~~q~~mlqfEAaWalTNiaSG 145 (526)
T COG5064 73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMD-------EIQRDMLQFEAAWALTNIASG 145 (526)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHH-------hcchhHHHHHHHHHHhhhccC
Q ss_pred CChH-------HHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcC---------------------CCCHHHHH----HH
Q 000319 334 ADAP-------QILTALCDRLLDFDENVRKQVVAVICDVACHALN---------------------SIPVETVK----LV 381 (1674)
Q Consensus 334 ~~~~-------eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~---------------------~V~~elL~----~L 381 (1674)
.-.+ .-+..|...|.++...||-++|=+++.+|-.+.. .+..++++ +|
T Consensus 146 tt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtL 225 (526)
T COG5064 146 TTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTL 225 (526)
T ss_pred cccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHH
Q ss_pred HHhhccCCh----hHHHHHHHHHHHH
Q 000319 382 AERLRDKSV----LVKRYTMERLADI 403 (1674)
Q Consensus 382 aeR~RDKK~----~VRkeAm~~La~L 403 (1674)
...+|-|++ .+=..|+..|++|
T Consensus 226 SNlcRGknP~P~w~~isqalpiL~KL 251 (526)
T COG5064 226 SNLCRGKNPPPDWSNISQALPILAKL 251 (526)
T ss_pred HHhhCCCCCCCchHHHHHHHHHHHHH
No 160
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=37.74 E-value=1.5e+02 Score=36.34 Aligned_cols=87 Identities=18% Similarity=0.221 Sum_probs=66.9
Q ss_pred HHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhh-CCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHH
Q 000319 315 VRMSVLEHVKSCLLTDPSRADAPQILTALCDRL-LDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVK 393 (1674)
Q Consensus 315 VR~~~ve~~~~iL~s~p~~~~~~eIi~~L~~rL-~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR 393 (1674)
=|+.+++....+ |.......|+++|...+ -+..|.+..+.+.+++.-....-..+|..++..+..=+.|||+.||
T Consensus 3 ~r~~~~~~L~~l----~~~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR 78 (339)
T PF12074_consen 3 QRVLHASMLSSL----PSSSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVR 78 (339)
T ss_pred HHHHHHHHHHhC----CCcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHH
Confidence 355555554432 22235678888888876 4599999999999997643333378899999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 000319 394 RYTMERLADIFR 405 (1674)
Q Consensus 394 keAm~~La~LY~ 405 (1674)
+.-+..++.++.
T Consensus 79 ~~w~~~~~~~~~ 90 (339)
T PF12074_consen 79 RAWLLCLGEALW 90 (339)
T ss_pred HHHHHHHHHHHh
Confidence 999999999877
No 161
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=37.35 E-value=1.2e+02 Score=35.91 Aligned_cols=135 Identities=14% Similarity=0.150 Sum_probs=74.4
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhC
Q 000319 269 TDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLL 348 (1674)
Q Consensus 269 sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~~~eIi~~L~~rL~ 348 (1674)
++|+.++..|+-++|..-+.+...-.-..-..-.-..+-..|.++.||...+.+..++=.+......++.-+..+++...
T Consensus 24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~ 103 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETV 103 (254)
T ss_pred CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHh
Confidence 67899999999999986554321111111122234566778899999987777765422221111222233445555433
Q ss_pred C--ChhHHHHHHHHHHHHhhhhh-cCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000319 349 D--FDENVRKQVVAVICDVACHA-LNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 403 (1674)
Q Consensus 349 D--~DEkVR~aaV~ai~~la~~~-l~~V~~elL~~LaeR~RDKK~~VRkeAm~~La~L 403 (1674)
. .|..|..++.+.+..++... .+.+=...+..+...+.-=...+|..++..|..|
T Consensus 104 s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 104 SSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred cCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 3 36788889889988886532 1111111222222223333456777777766655
No 162
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=37.18 E-value=6.6e+02 Score=31.59 Aligned_cols=112 Identities=14% Similarity=0.074 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHHhhCCcCccccHHHHHH-HHh---h---ccccchHHHHHHHHHhhcchhhh-hh--------cccchH
Q 000319 620 FMQSCMDILGILARFSPLLLGGTEEELVN-LLK---E---ENEIIKEGILHVLAKAGGTIREQ-LA--------ATSSSV 683 (1674)
Q Consensus 620 ~~~~a~eLL~~IS~~~P~lFk~~v~~Li~-lL~---~---~~~~~~~~aLkiLak~~k~i~e~-~~--------~~~s~l 683 (1674)
....|.++|..+++.++.....-+...+. +|. . .+...++++|..+..++-..... .. .....|
T Consensus 227 rR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff 306 (370)
T PF08506_consen 227 RRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFF 306 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHH
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHH
Confidence 35678899999998876544333322222 222 1 12245688888887654322110 00 001111
Q ss_pred ----HHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhhc
Q 000319 684 ----DLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEK 732 (1674)
Q Consensus 684 ----~~~L~~lal~Gtp~qAKyAvr~Laa~~~~~~~~~~~~L~~~L~~~L~~~ 732 (1674)
.+-|. -.....|-.-=.|++.+....+-=....+..++..++.+|...
T Consensus 307 ~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~ 358 (370)
T PF08506_consen 307 SQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSS 358 (370)
T ss_dssp HHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS
T ss_pred HHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCC
Confidence 22233 1223345333356666664443211223445677777777643
No 163
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=37.16 E-value=1.8e+02 Score=37.25 Aligned_cols=38 Identities=13% Similarity=0.222 Sum_probs=30.6
Q ss_pred ccccceEEEecCCCCceEEEEEEeecCCC------CeeEEEccC
Q 000319 1374 DLIGYRIKVWWPMDKQFYEGTIKSYDPIK------KKHVILYDD 1411 (1674)
Q Consensus 1374 ~lvG~rv~V~Wp~D~~~Y~G~V~~y~~~~------~~H~v~YdD 1411 (1674)
--||.+|.++|..|..||.++|....... ...-|.|..
T Consensus 54 ~~VGekVla~~~~Dg~~~~A~VI~~R~~~~~~~~~~~YYVHY~g 97 (450)
T PLN00104 54 LEVGTRVMCRWRFDGKYHPVKVIERRRGGSGGPNDYEYYVHYTE 97 (450)
T ss_pred eccCCEEEEEECCCCCEEEEEEEEEeccCCCCCCCceEEEEEec
Confidence 34999999999999999999999988632 346677753
No 164
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=37.07 E-value=7.4e+02 Score=28.94 Aligned_cols=71 Identities=23% Similarity=0.247 Sum_probs=49.0
Q ss_pred HHHHHHhhcchhhhhhhhcccccc-cCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHH
Q 000319 244 VIYDVYRCSPQILSGVVPYLTGEL-LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 321 (1674)
Q Consensus 244 Li~eL~~~~P~lL~~ViP~Le~EL-~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve 321 (1674)
-+.++-+..|+-=..+++.|..=| ..+++..+..|++.+.-+.... +-.+..+|+...+++ +-+-|-.+++
T Consensus 107 s~~~ic~~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~----vvd~~s~w~vl~~~l---~~~~rp~v~~ 178 (234)
T PF12530_consen 107 SIRDICCSRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE----VVDFYSAWKVLQKKL---SLDYRPLVLK 178 (234)
T ss_pred HHHHHHHhChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh----hccHHHHHHHHHHhc---CCccchHHHH
Confidence 344455555654444566666666 7899999999999999999543 456677999999888 3344444444
No 165
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=36.55 E-value=61 Score=41.79 Aligned_cols=63 Identities=17% Similarity=0.194 Sum_probs=39.4
Q ss_pred hcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCC
Q 000319 308 LTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI 373 (1674)
Q Consensus 308 ~~D~s~~VR~~~ve~~~~iL~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V 373 (1674)
.+|+++-.|..=+-...-...- ..+ ..-+-.-|.--..|.++.||+|||-+++-+.|.....+
T Consensus 525 l~d~ds~lRy~G~fs~alAy~G-Tgn--~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~~l 587 (926)
T COG5116 525 LYDKDSILRYNGVFSLALAYVG-TGN--LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRDLL 587 (926)
T ss_pred hcCchHHhhhccHHHHHHHHhc-CCc--chhHhhhheeecccCchHHHHHHHHheeeeEecCcchh
Confidence 3688888887644333221211 111 12233344445899999999999999988877766654
No 166
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=36.20 E-value=6e+02 Score=33.66 Aligned_cols=123 Identities=8% Similarity=0.143 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHhhhccCCCccccccccchHHHhhhhccCCCC------chhHHHHhhcCCcCCCCCHHHHHHHHHHHH
Q 000319 395 YTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFG------SDTIESVLCGSLFPTGFSVKDRVRHWVRIF 468 (1674)
Q Consensus 395 eAm~~La~LY~~~~~~~~~~~~~~~~~~wIPskIL~~~Y~nD~~------~~lVE~vL~e~LlP~~~~~~~R~~~ll~l~ 468 (1674)
+|--.+..+|+.+..- .+ -..|+.-||.+.+. ...++.|+.+ .++.|.-.+-++.
T Consensus 246 eaa~Vve~ay~~~A~l-------~Q-----r~~li~EfYG~efqlfK~sn~~Tl~kil~~-------~pekk~~I~~~l~ 306 (652)
T KOG2050|consen 246 EAAYVVEYAYNDFATL-------EQ-----RQYLIQEFYGDEFQLFKDSNDKTLDKILAE-------APEKKASILRHLK 306 (652)
T ss_pred HHHHHHHHHHHhhccH-------HH-----HHHHHHHHhhHHHHHHhccCcccHHHHHHh-------ChHhHHHHHHHHH
Confidence 5566677777765321 01 12334445544322 2268888664 5567777777777
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHh--hcCCchHHHHHHHHHHhhchHH
Q 000319 469 SGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSR--SFAEPAKAEENFLILDQLKDAN 546 (1674)
Q Consensus 469 ~~LD~~~~kal~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kL~~~I~~Ls~--~fPDp~Ka~~~L~kf~klnD~R 546 (1674)
..+++..-|-...+ +-+-.+|..||..|. +.+...-|+-+...+.. +-||..++.=.+-.++-.+||+
T Consensus 307 ~~I~~v~eKg~v~~----tivHk~mlEy~~~ad------e~e~~e~l~ll~elv~e~vHT~dGS~vAm~li~~a~aKeRK 376 (652)
T KOG2050|consen 307 AIITPVAEKGSVDH----TIVHKLMLEYLTIAD------EEEKSELLELLKELVPEMVHTRDGSRVAMKLIWHATAKERK 376 (652)
T ss_pred HHhHHHhhcchhHH----HHHHHHHHHHHHhCC------HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhCCHHHHH
Confidence 77777655543332 456778999998763 33343344433344443 3466666533333334456654
No 167
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=36.05 E-value=9e+02 Score=30.08 Aligned_cols=168 Identities=13% Similarity=0.189 Sum_probs=92.5
Q ss_pred HHhhcCCCCCCCCcchHHHHHHHHHhh-cchhhhhhhhcccccccCCChHHHHHHHHHHHHhhcCC-CCC------chhh
Q 000319 225 VSSMSGDSRPGHSHIDYHEVIYDVYRC-SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP-GSA------NNEQ 296 (1674)
Q Consensus 225 ~~~l~~d~~~~~~~~~~h~Li~eL~~~-~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~-~~~------~a~~ 296 (1674)
..++.|++.........+.|..|+++. .-.+|...+|.|+. +.|..++..++-++... +.. +...
T Consensus 49 K~IL~G~~e~ep~~e~v~qLa~Ei~~~dll~~Li~~L~~L~f-------EsrKdv~~if~~llr~~~~~~~~p~v~yl~~ 121 (335)
T PF08569_consen 49 KEILYGDGEPEPNPEQVAQLAQEIYRSDLLYLLIRNLPKLDF-------ESRKDVAQIFSNLLRRQIGSRSPPTVDYLER 121 (335)
T ss_dssp HHHHHS-SS----HHHHHHHHHHHHHHTHHHHHHHTGGGS-H-------HHHHHHHHHHHHHHT--BTTB--HHHHHHHT
T ss_pred HHHhcCCCCCCCCHHHHHHHHHHHHHhCHHHHHHHHhhhCCC-------cccccHHHHHHHHHhhccCCCCCchHHHHHh
Confidence 356677654443444578899999887 23344556666666 48999999999998763 222 3557
Q ss_pred c-HHHHHHHHhhhcCCChhHHHHHH-------HHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhh
Q 000319 297 F-HSVFSEFLKRLTDRIVAVRMSVL-------EHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACH 368 (1674)
Q Consensus 297 y-~~~w~~fL~R~~D~s~~VR~~~v-------e~~~~iL~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~ 368 (1674)
| |++....+.-..+.+..+=+..+ +.+..+++.++ ...-+.+-..-+.=.|=..|..++.++-..
T Consensus 122 ~~peil~~L~~gy~~~dial~~g~mlRec~k~e~l~~~iL~~~-------~f~~ff~~~~~~~Fdiasdaf~t~~~llt~ 194 (335)
T PF08569_consen 122 HRPEILDILLRGYENPDIALNCGDMLRECIKHESLAKIILYSE-------CFWKFFKYVQLPNFDIASDAFSTFKELLTR 194 (335)
T ss_dssp --THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHHHHHHHTSG-------GGGGHHHHTTSSSHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHhcCccccchHHHHHHHHHhhHHHHHHHhCcH-------HHHHHHHHhcCCccHhHHHHHHHHHHHHhc
Confidence 7 88888888877765543322111 11111222111 112233444455555666666666555443
Q ss_pred hcCCCCH-------HHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000319 369 ALNSIPV-------ETVKLVAERLRDKSVLVKRYTMERLADIFRG 406 (1674)
Q Consensus 369 ~l~~V~~-------elL~~LaeR~RDKK~~VRkeAm~~La~LY~~ 406 (1674)
+-..+.. ..+......+.-.+.-.|+.++..||.|.-.
T Consensus 195 hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellld 239 (335)
T PF08569_consen 195 HKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLD 239 (335)
T ss_dssp SHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHc
Confidence 2222211 2344666677777888888999988888754
No 168
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=36.04 E-value=6.8e+02 Score=32.41 Aligned_cols=177 Identities=12% Similarity=0.161 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHhhcCC-ChhhHHHHHHHHHHHHhcccccccH----HHHHHHHHhhcCCCcH----HHHHHHHHHHHHh
Q 000319 142 ELVNEMYSTFFAVASDD-HPESVLSSMQTIMIVLLEESEDIQE----DLLVILLSALGRNKND----TARRLAMNVIEQC 212 (1674)
Q Consensus 142 ~Li~~lF~~ff~iv~~~-~~~~V~~~m~~IL~~vI~Ese~vp~----~lLd~IL~~l~~~~~~----~a~~lA~~v~~~~ 212 (1674)
+++.++.+. .+++ ....-...|..|+.-+-+.+.+|.. ++|..+|.-+...+.. -|.++-..+|.+-
T Consensus 286 ~~v~~~l~~----~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q 361 (516)
T KOG2956|consen 286 ALVADLLKE----ISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQ 361 (516)
T ss_pred HHHHHHHHh----ccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhc
Confidence 445444443 3333 3455667888888888888888888 5556666666553332 6677777777777
Q ss_pred hhhhhHHH----HHHHHHhhcCCCCCCCCcchHHHHHHHHHhhcchhhhhhhhcccccccCCChHHHHHHHHHHHHhhcC
Q 000319 213 AGKLEAGI----KQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAV 288 (1674)
Q Consensus 213 ~dkL~~~I----~q~f~~~l~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~ 288 (1674)
+++|..+. +.++-..-.-.+.. .....-..+.-|..+.|..=..||-. -+..+|.+.=.++++.+.+||..
T Consensus 362 ~~~l~DstE~ai~K~Leaa~ds~~~v--~~~Aeed~~~~las~~P~~~I~~i~~---~Ilt~D~~~~~~~iKm~Tkl~e~ 436 (516)
T KOG2956|consen 362 PARLFDSTEIAICKVLEAAKDSQDEV--MRVAEEDCLTTLASHLPLQCIVNISP---LILTADEPRAVAVIKMLTKLFER 436 (516)
T ss_pred hHhhhchHHHHHHHHHHHHhCCchhH--HHHHHHHHHHHHHhhCchhHHHHHhh---HHhcCcchHHHHHHHHHHHHHhh
Confidence 77765543 33332211100000 11122345555566666543333322 13347778888899999999976
Q ss_pred CCC-CchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHH
Q 000319 289 PGS-ANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCL 327 (1674)
Q Consensus 289 ~~~-~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL 327 (1674)
-.. .+...-|++-=+++.-+.-.+..||..+|=|...++
T Consensus 437 l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 437 LSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred cCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 432 233444555566666777778888887777765544
No 169
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=35.64 E-value=76 Score=43.84 Aligned_cols=16 Identities=19% Similarity=-0.016 Sum_probs=10.5
Q ss_pred cchhhhHHHHhhccCC
Q 000319 955 YPEYIIPYLVHTFAHH 970 (1674)
Q Consensus 955 ~pEy~LprLIHlLAHH 970 (1674)
.-||+|+-+.--=.|.
T Consensus 1213 K~e~iF~~fn~de~hN 1228 (3015)
T KOG0943|consen 1213 KEEDIFMGFNCDEGHN 1228 (3015)
T ss_pred hhhhhccccccCCCCC
Confidence 3477777766666666
No 170
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=35.05 E-value=1.3e+03 Score=31.59 Aligned_cols=277 Identities=15% Similarity=0.189 Sum_probs=152.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCchh-hHHhHHHHHHHh-chhhhhcC------------CCcchHHHHHHHHHHHhhhcC
Q 000319 23 KDGLVKLLKQAATCLSELNQSPPAS-ILEAMQPFLNAI-VQPVLLKH------------QDKDVKLLVATCICEITRITA 88 (1674)
Q Consensus 23 ~~eLlkrLk~L~~~Ls~~dQ~~~~~-~~~sl~~~~~~L-v~~~LL~H------------kD~~Vr~~vAcCLadIlRI~A 88 (1674)
..-|+..++..++||.. .--|... -..++++++-+. +++++=.| .+-++-++ .-|+=++.--|+
T Consensus 494 ~~ill~aye~t~ncl~n-n~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~L-S~vMe~fVe~fs 571 (970)
T COG5656 494 NGILLEAYENTHNCLKN-NHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPL-SMVMESFVEYFS 571 (970)
T ss_pred chHHHHHHHHHHHHHhc-CCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHH-HHHHHHHHHHhH
Confidence 34577777777787766 2222211 112333333332 12222222 22222222 345666666666
Q ss_pred CCC-CCChhHHHHHHHHhcCC--------CCCCCCChhhHHHHHHHHHhhhhhheeccCCchHHHHHHHHHHHHhhc---
Q 000319 89 PEA-PYSDDVLKLIVGTFSGL--------KDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVAS--- 156 (1674)
Q Consensus 89 PdA-Pytdd~lkli~~~f~~L--------~d~~~p~f~q~~~lLesLA~vks~vlm~DL~~~~Li~~lF~~ff~iv~--- 156 (1674)
-+. ||..+-..-+++||=.| .|+.+..-.++...+--|.+.-|.+|-++ ..-+++..+...++.+++
T Consensus 572 eELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSle-n~p~vLk~le~slypvi~Fil 650 (970)
T COG5656 572 EELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLE-NRPLVLKYLEVSLYPVISFIL 650 (970)
T ss_pred HhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHH
Confidence 554 88877666666666222 22233334677777777777666655433 135678888888888765
Q ss_pred CCChhhHHHHHHHHHHH---HhcccccccHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHHh-hcCCC
Q 000319 157 DDHPESVLSSMQTIMIV---LLEESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSS-MSGDS 232 (1674)
Q Consensus 157 ~~~~~~V~~~m~~IL~~---vI~Ese~vp~~lLd~IL~~l~~~~~~~a~~lA~~v~~~~~dkL~~~I~q~f~~~-l~~d~ 232 (1674)
.+....+.....+|+.. .+-|.+.|-..++..|++.+....+ ++ -...+.-+|+++ ++|+.
T Consensus 651 kn~i~dfy~Ea~dildg~tf~skeI~pimwgi~Ell~~~l~~~~t--~~-------------y~ee~~~al~nfityG~~ 715 (970)
T COG5656 651 KNEISDFYQEALDILDGYTFMSKEIEPIMWGIFELLLNLLIDEIT--AV-------------YSEEVADALDNFITYGKT 715 (970)
T ss_pred hhhHHHHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHHhcccccch--hh-------------hHHHHHHHHHHHHHhCcc
Confidence 23333444444444432 3334445555555555544432211 10 011122334453 34543
Q ss_pred CCCCCcchHHHHHHHHHhhcchhhhhhhhcccccccCCCh--HHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHh---h
Q 000319 233 RPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQL--DTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLK---R 307 (1674)
Q Consensus 233 ~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~--~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~---R 307 (1674)
... ..-.+-.++.+|.+.| |.+|+. .-|..+.+++-.+.-.-+-.+.++|-++|..-.| .
T Consensus 716 ef~-~~~~y~~i~~eI~~~~--------------l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~plfi~vags~l~ 780 (970)
T COG5656 716 EFM-DAGIYGSICSEISKLC--------------LCSEENFLEDFIGVCRIIESLILNIRDELLSQYLPLFISVAGSGLK 780 (970)
T ss_pred ccc-cccchhHHHHHHHHHH--------------HcchhhhHHHHHHHHHHHHHHHHHccchhHHhhhHHHHHHHhhhhh
Confidence 222 2223555666655443 334443 5667777777766655555688889889998877 6
Q ss_pred hcCCChhHHHHHHHHhHHHHhcCCC
Q 000319 308 LTDRIVAVRMSVLEHVKSCLLTDPS 332 (1674)
Q Consensus 308 ~~D~s~~VR~~~ve~~~~iL~s~p~ 332 (1674)
..|-.+.-|+-.++.+.+++..+|.
T Consensus 781 ~~dElg~~sv~aleliinnli~~P~ 805 (970)
T COG5656 781 MIDELGPASVYALELIINNLILRPK 805 (970)
T ss_pred ccccccchhhhHHHHHHHHHhcChH
Confidence 7788888899999999999998885
No 171
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=34.65 E-value=5.7e+02 Score=30.85 Aligned_cols=147 Identities=24% Similarity=0.283 Sum_probs=80.6
Q ss_pred HHHHHHHHHhhcchhhhhhhhccccccc--CCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhc-CCChhHHH
Q 000319 241 YHEVIYDVYRCSPQILSGVVPYLTGELL--TDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLT-DRIVAVRM 317 (1674)
Q Consensus 241 ~h~Li~eL~~~~P~lL~~ViP~Le~EL~--sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~-D~s~~VR~ 317 (1674)
.|++.|-|-+-.- ...+|.|..-|. +..+-+|..|-+.||.++ .+. -..+|.|.. |...+||-
T Consensus 53 khe~ay~LgQ~~~---~~Av~~l~~vl~desq~pmvRhEAaealga~~-~~~----------~~~~l~k~~~dp~~~v~E 118 (289)
T KOG0567|consen 53 KHELAYVLGQMQD---EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DPE----------SLEILTKYIKDPCKEVRE 118 (289)
T ss_pred ccchhhhhhhhcc---chhhHHHHHHhcccccchHHHHHHHHHHHhhc-chh----------hHHHHHHHhcCCccccch
Confidence 4666665544321 112333333333 457899999999999888 543 235555555 66666665
Q ss_pred HHHHHhHHH---------Hhc------CCCCC-Ch--------------------------------HHHHHHHHhhhCC
Q 000319 318 SVLEHVKSC---------LLT------DPSRA-DA--------------------------------PQILTALCDRLLD 349 (1674)
Q Consensus 318 ~~ve~~~~i---------L~s------~p~~~-~~--------------------------------~eIi~~L~~rL~D 349 (1674)
.|-.++.++ ..+ +|... .. .+-+.+|.+-|.|
T Consensus 119 Tc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~ 198 (289)
T KOG0567|consen 119 TCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLAD 198 (289)
T ss_pred HHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhccc
Confidence 433333321 111 12111 00 1223344444555
Q ss_pred ChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCC--hhHHHHHHHHHHHHHHHHh
Q 000319 350 FDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKS--VLVKRYTMERLADIFRGCC 408 (1674)
Q Consensus 350 ~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK--~~VRkeAm~~La~LY~~~~ 408 (1674)
.-.-.|..|--+++++- +...+-.|.+.++|.+ +=||.+|.+.||.+=...|
T Consensus 199 ~SalfrhEvAfVfGQl~-------s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~~ 252 (289)
T KOG0567|consen 199 DSALFRHEVAFVFGQLQ-------SPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADEDC 252 (289)
T ss_pred chHHHHHHHHHHHhhcc-------chhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHHH
Confidence 55555555444444422 3334566778888887 6799999999998877654
No 172
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=33.94 E-value=4.1e+02 Score=33.02 Aligned_cols=96 Identities=16% Similarity=0.145 Sum_probs=63.7
Q ss_pred cccCCChHHHHHHHHHHHHhhcCCC-C--Cchh--hcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHH-
Q 000319 266 ELLTDQLDTRLKAVGLVGDLFAVPG-S--ANNE--QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQI- 339 (1674)
Q Consensus 266 EL~sed~~~Rl~At~llG~mfs~~~-~--~~a~--~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~~~eI- 339 (1674)
.|.+.+..+|..|+.+||.++.... + .+.. .-+.+...+- .|.+..+|...+=++...|.+++.. ..+.
T Consensus 132 ~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls---~~~~~~~r~kaL~AissLIRn~~~g--~~~fl 206 (342)
T KOG2160|consen 132 YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILS---SDDPNTVRTKALFAISSLIRNNKPG--QDEFL 206 (342)
T ss_pred HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHc---cCCCchHHHHHHHHHHHHHhcCcHH--HHHHH
Confidence 6778999999999999999998642 1 1111 1234444443 6778889999999999888888742 1222
Q ss_pred ----HHHHHhhhCCChhHHHHH--HHHHHHHhh
Q 000319 340 ----LTALCDRLLDFDENVRKQ--VVAVICDVA 366 (1674)
Q Consensus 340 ----i~~L~~rL~D~DEkVR~a--aV~ai~~la 366 (1674)
+..|.+.|...+..||.. |+--|..+.
T Consensus 207 ~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll 239 (342)
T KOG2160|consen 207 KLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLL 239 (342)
T ss_pred hcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence 257888888865555555 333444433
No 173
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.92 E-value=1.1e+02 Score=40.22 Aligned_cols=52 Identities=12% Similarity=0.029 Sum_probs=45.0
Q ss_pred HHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhh
Q 000319 317 MSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACH 368 (1674)
Q Consensus 317 ~~~ve~~~~iL~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~ 368 (1674)
..+|+||-.++...|+......|+.++-..+.|+..-||...|.+|..+...
T Consensus 303 ~vav~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~ 354 (704)
T KOG2153|consen 303 QVAVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFEN 354 (704)
T ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcC
Confidence 4688889888888888777789999999999999999999999998776653
No 174
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=33.63 E-value=1.2e+02 Score=38.03 Aligned_cols=111 Identities=17% Similarity=0.209 Sum_probs=77.9
Q ss_pred hhhcccccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHH-HHHHHhhhcCCCh---hHHHHHHHHhHHHHhcC--CC
Q 000319 259 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSV-FSEFLKRLTDRIV---AVRMSVLEHVKSCLLTD--PS 332 (1674)
Q Consensus 259 ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~-w~~fL~R~~D~s~---~VR~~~ve~~~~iL~s~--p~ 332 (1674)
.++.+..-|.+++-.+|..|-+.+--++++.. +.+..-.+ -..|+-|.-|++- .=|.+.++.+..++.-. +.
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~--~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~ 103 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEE--SLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK 103 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHH--HHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc
Confidence 33444445667889999999999999998763 22222111 2245666666543 34888888888888763 22
Q ss_pred CCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCC
Q 000319 333 RADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS 372 (1674)
Q Consensus 333 ~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~ 372 (1674)
..-.-++.+|....-++||+.|..+++++|+++..++..
T Consensus 104 -~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~l 142 (371)
T PF14664_consen 104 -EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPEL 142 (371)
T ss_pred -cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHH
Confidence 223467788888888899999999999999999887664
No 175
>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification]
Probab=33.12 E-value=42 Score=38.84 Aligned_cols=37 Identities=19% Similarity=0.386 Sum_probs=31.2
Q ss_pred cccccceEEEecCCCCceEEEEEEeecCCCCeeEEEc
Q 000319 1373 EDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILY 1409 (1674)
Q Consensus 1373 ~~lvG~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~Y 1409 (1674)
..=||.+|-+-|++|..||..+|....+.++.-.|.+
T Consensus 90 ~w~vg~K~~A~~~ddg~~y~AtIe~ita~~~~~ai~f 126 (262)
T KOG3026|consen 90 GWKVGDKVQAVFSDDGQIYDATIEHITAMEGTVAIIF 126 (262)
T ss_pred ccccCCEEEEeecCCCceEEeehhhccCCCCceeEEE
Confidence 3459999999999999999999999999766655554
No 176
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=33.06 E-value=1.1e+03 Score=31.33 Aligned_cols=234 Identities=20% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCCCchhhHHhHHHHHHHhchhhhhcCCCcchHHHHHHHHHHHhhhcCCCC--CCChhHHHHHHHHhc
Q 000319 29 LLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEA--PYSDDVLKLIVGTFS 106 (1674)
Q Consensus 29 rLk~L~~~Ls~~dQ~~~~~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~APdA--Pytdd~lkli~~~f~ 106 (1674)
|...|...+...+.+.+.....-+..+...|+.-.=+.--+..-|+..-..|-.+.-++ ||+ |....+
T Consensus 473 ~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~-~d~V~~~~a~~--------- 542 (858)
T COG5215 473 RKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILIC-PDAVSDILAGF--------- 542 (858)
T ss_pred HHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhc-chhHHHHHHHH---------
Q ss_pred CCCCCCCCChhhHHHHHHHHHhhhhhh-eeccCCchHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHH
Q 000319 107 GLKDTGGPSFGRRVVILETLAKYRSCV-VMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDL 185 (1674)
Q Consensus 107 ~L~d~~~p~f~q~~~lLesLA~vks~v-lm~DL~~~~Li~~lF~~ff~iv~~~~~~~V~~~m~~IL~~vI~Ese~vp~~l 185 (1674)
|-|++..|-+.-|.. -+++++...++.++-..+..+. ..|...-=...+.+...+
T Consensus 543 ------------~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl------------~aiir~~~~~ie~v~D~l 598 (858)
T COG5215 543 ------------YDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVL------------EAIIRTRRRDIEDVEDQL 598 (858)
T ss_pred ------------HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH------------HHHHHhcCCCcccHHHHH
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhcchhhhhhhhcccc
Q 000319 186 LVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTG 265 (1674)
Q Consensus 186 Ld~IL~~l~~~~~~~a~~lA~~v~~~~~dkL~~~I~q~f~~~l~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~ 265 (1674)
+...+..+...+..-++.=.---|..-+..|+..+.+|... .+|+|..
T Consensus 599 m~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~--------------------------------fiPyl~~ 646 (858)
T COG5215 599 MELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASK--------------------------------FIPYLTR 646 (858)
T ss_pred HHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhh--------------------------------hhHHHHH
Q ss_pred cccCCChHHHHHHHHHHHHhhcCCCCCc-----------------hhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHh
Q 000319 266 ELLTDQLDTRLKAVGLVGDLFAVPGSAN-----------------NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLL 328 (1674)
Q Consensus 266 EL~sed~~~Rl~At~llG~mfs~~~~~~-----------------a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~ 328 (1674)
-|.--|-.+=.-|+.++|++--.-+.+| ..+|+++=-+-|+-|.|+.-.|-..+..+.-.|.+
T Consensus 647 aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~ 726 (858)
T COG5215 647 ALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMM 726 (858)
T ss_pred HhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHH
No 177
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=32.93 E-value=1.2e+02 Score=32.95 Aligned_cols=71 Identities=15% Similarity=0.229 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccH------HHHHHHHhh-ccccchHHHHHHHHHhhcc
Q 000319 599 KEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE------EELVNLLKE-ENEIIKEGILHVLAKAGGT 671 (1674)
Q Consensus 599 ks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v------~~Li~lL~~-~~~~~~~~aLkiLak~~k~ 671 (1674)
+..+..|.+++.. .|....-.|+.||..+.+.|...|...+ ++|++++.. ..+.+...+|..+..|+..
T Consensus 36 k~a~ral~KRl~~----~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 36 KDCLKAIMKRLNH----KDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 4455566665532 2223344577888888888888887654 667777766 3445677888888888755
Q ss_pred hh
Q 000319 672 IR 673 (1674)
Q Consensus 672 i~ 673 (1674)
++
T Consensus 112 f~ 113 (144)
T cd03568 112 FK 113 (144)
T ss_pred hC
Confidence 44
No 178
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=31.94 E-value=3.3e+02 Score=33.79 Aligned_cols=145 Identities=15% Similarity=0.133 Sum_probs=92.4
Q ss_pred hhcccccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHH
Q 000319 260 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQI 339 (1674)
Q Consensus 260 iP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~~~~~eI 339 (1674)
+|.--....+-+.+.|..|..-|-.+.-..+-+..=.--.-|.--|+=.++.++.||.....-++.|..|||.- ...+
T Consensus 85 ~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~--Qe~v 162 (342)
T KOG2160|consen 85 IPIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKS--QEQV 162 (342)
T ss_pred hhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHH--HHHH
Confidence 45555556677888899999988766644331111111235888888889999999999999999999999941 1233
Q ss_pred HH------HHHhhhCCChhHHHHHHHHHHHHhhhhhcC------CC-CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000319 340 LT------ALCDRLLDFDENVRKQVVAVICDVACHALN------SI-PVETVKLVAERLRDKSVLVKRYTMERLADIFRG 406 (1674)
Q Consensus 340 i~------~L~~rL~D~DEkVR~aaV~ai~~la~~~l~------~V-~~elL~~LaeR~RDKK~~VRkeAm~~La~LY~~ 406 (1674)
++ -+.---.|.+..||..|.-+|+.+.....- .+ ...+|..+.++= +.....++.|+..++.|-..
T Consensus 163 ~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~-~~~~~lkrK~~~Ll~~Ll~~ 241 (342)
T KOG2160|consen 163 IELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSN-NTSVKLKRKALFLLSLLLQE 241 (342)
T ss_pred HHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcC-CcchHHHHHHHHHHHHHHHh
Confidence 31 222223899999999999999887653322 22 223444443331 13455566677777666654
Q ss_pred H
Q 000319 407 C 407 (1674)
Q Consensus 407 ~ 407 (1674)
.
T Consensus 242 ~ 242 (342)
T KOG2160|consen 242 D 242 (342)
T ss_pred h
Confidence 3
No 179
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=31.87 E-value=1.3e+03 Score=30.43 Aligned_cols=49 Identities=20% Similarity=0.168 Sum_probs=39.7
Q ss_pred HHHHHHHHHhhcchhhhhhhhcccccccCCChHHHHHHHHHHHHhhcCCC
Q 000319 241 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG 290 (1674)
Q Consensus 241 ~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~ 290 (1674)
+..++..++...|+.|.+-+|.|...|..-++..|.+ +..+--+++...
T Consensus 182 LLrvlS~Vye~~P~~i~PhlP~l~~lL~q~~p~~~~l-l~~l~~LI~Qk~ 230 (851)
T KOG3723|consen 182 LLRVLSAVYEKQPQPINPHLPELLALLSQLEPEQYHL-LRLLHVLIKQKQ 230 (851)
T ss_pred HHHHHHHHHhcCCCccCcccHHHHHHhcCCCHHHHHH-HHHHHHHHHhcc
Confidence 6788899999999999999999999999999888754 445555665543
No 180
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=31.58 E-value=2.7e+02 Score=38.91 Aligned_cols=137 Identities=15% Similarity=0.137 Sum_probs=85.2
Q ss_pred cchhhhhhhhcccccccCCChHHHHHHHHHHHHhhcCCCC-CchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcC
Q 000319 252 SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGS-ANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD 330 (1674)
Q Consensus 252 ~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~-~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~ 330 (1674)
.+.++.--+.+|+.- ...-+|+=+.-+||+++..-.. .+.=..-......+.=..|-.|+||++.|-+.+.+|.+-
T Consensus 597 ~~~li~iCle~lnd~---~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 597 NGNLIGICLEHLNDD---PEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred cccHHHHHHHHhcCC---ccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 445554333333321 2688999999999999986432 222233344555666778999999999999999988864
Q ss_pred CCCCChHHHHHHHHhhhCC-ChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHh
Q 000319 331 PSRADAPQILTALCDRLLD-FDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCC 408 (1674)
Q Consensus 331 p~~~~~~eIi~~L~~rL~D-~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VRkeAm~~La~LY~~~~ 408 (1674)
.++-+ --....+.++| .|++++.+-.. ...+-.++.++.|=.+-||.+-...|+.+-..|.
T Consensus 674 ~d~fd---e~~~~~~~~~~l~~~~~~~E~~i--------------~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~ 735 (1387)
T KOG1517|consen 674 SDNFD---EQTLVVEEEIDLDDERTSIEDLI--------------IKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYV 735 (1387)
T ss_pred ccccc---hhhhhhhhhhcchhhhhhHHHHH--------------HhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhH
Confidence 32111 11122233444 44444443111 1112356789999999999998888888766553
No 181
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=31.07 E-value=3.5e+02 Score=34.06 Aligned_cols=78 Identities=19% Similarity=0.375 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhh--------hhhhHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhcchhhhhhhhcccccccC--
Q 000319 200 TARRLAMNVIEQCA--------GKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLT-- 269 (1674)
Q Consensus 200 ~a~~lA~~v~~~~~--------dkL~~~I~q~f~~~l~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~s-- 269 (1674)
-|-.+-..+++.|. +.|+..+++|..+-+. -....++.++..|...+|+++.+.||+|+.+|..
T Consensus 277 ~a~e~l~~mv~~~~~~~~~~~~~~l~s~lrsfvqk~l~------~~t~~~f~~l~~vA~l~p~lV~~Lip~i~q~l~~~E 350 (373)
T PF14911_consen 277 LATELLQYMVESCQVGSSGEPREQLTSVLRSFVQKYLA------HYTYQYFQFLEKVAELDPQLVISLIPTIRQSLKDSE 350 (373)
T ss_pred HHHHHHHHHHHcccccCcchHHHHHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555 3355555555443211 1223689999999999999999999999998863
Q ss_pred ------CChHHHHHHHHHHH
Q 000319 270 ------DQLDTRLKAVGLVG 283 (1674)
Q Consensus 270 ------ed~~~Rl~At~llG 283 (1674)
+|...|..=-++++
T Consensus 351 ~kRG~G~d~~lR~~~~rL~~ 370 (373)
T PF14911_consen 351 RKRGLGRDVALRKALSRLLS 370 (373)
T ss_pred HHhcCCcCHHHHHHHHHHHH
Confidence 36666666555554
No 182
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=30.60 E-value=1.2e+03 Score=32.53 Aligned_cols=104 Identities=15% Similarity=0.134 Sum_probs=78.7
Q ss_pred HHHHhhhcCCChhHHHHHHHHhHHHHhcCC---CCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh---cCCCCH
Q 000319 302 SEFLKRLTDRIVAVRMSVLEHVKSCLLTDP---SRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA---LNSIPV 375 (1674)
Q Consensus 302 ~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p---~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~---l~~V~~ 375 (1674)
..|...+.|+.-.=|.+.++....+|.+.. .......+.-++.-++.|..-.|=..+...+..+|... +.....
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~ 335 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAK 335 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 367788999999999999999999998765 11222356678888999999999988888888887632 333344
Q ss_pred HHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 000319 376 ETVKLVAERLRDKSVLVKRYTMERLADIFR 405 (1674)
Q Consensus 376 elL~~LaeR~RDKK~~VRkeAm~~La~LY~ 405 (1674)
.++-.|.+|+.|||..+|..+...+=.+.+
T Consensus 336 ~v~p~lld~lkekk~~l~d~l~~~~d~~~n 365 (815)
T KOG1820|consen 336 NVFPSLLDRLKEKKSELRDALLKALDAILN 365 (815)
T ss_pred hhcchHHHHhhhccHHHHHHHHHHHHHHHh
Confidence 566788999999999998876655544444
No 183
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=29.85 E-value=82 Score=26.27 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=25.4
Q ss_pred HHHHHHHhhhCCChhHHHHHHHHHHHHhh
Q 000319 338 QILTALCDRLLDFDENVRKQVVAVICDVA 366 (1674)
Q Consensus 338 eIi~~L~~rL~D~DEkVR~aaV~ai~~la 366 (1674)
..++.|...|.+.|..||.+|+-+++.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 36788889999999999999999998775
No 184
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=29.58 E-value=1.7e+02 Score=35.84 Aligned_cols=132 Identities=17% Similarity=0.223 Sum_probs=0.0
Q ss_pred hhcchhhhhhhhcccccccCCChHHHHHHHHHHHHhhcCCCCCchh--------hcHHHHHHHHhhhcCCCh--------
Q 000319 250 RCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE--------QFHSVFSEFLKRLTDRIV-------- 313 (1674)
Q Consensus 250 ~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~--------~y~~~w~~fL~R~~D~s~-------- 313 (1674)
.++=.+|.+=+..|+..|.+....+...|.++|..|.+-.|..+++ +++.+=.-.--|..+...
T Consensus 48 ~l~~~iL~~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~ 127 (330)
T PF11707_consen 48 ELIRSILQNHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSK 127 (330)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccC
Q ss_pred -hHHHHHHHHhHHHHhcCCC---------CCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHH
Q 000319 314 -AVRMSVLEHVKSCLLTDPS---------RADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAE 383 (1674)
Q Consensus 314 -~VR~~~ve~~~~iL~s~p~---------~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~Lae 383 (1674)
.||..+|+++-.+|...+. +....-+.++|.. |+.+-|+.- |.++.+
T Consensus 128 ~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~---D~~~~v~~i--------------------L~~l~~ 184 (330)
T PF11707_consen 128 PSIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRK---DPPETVILI--------------------LETLKD 184 (330)
T ss_pred cCHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccC---CCHHHHHHH--------------------HHHHHH
Q ss_pred hhccCChhHHH---------HHHHHHHHHHH
Q 000319 384 RLRDKSVLVKR---------YTMERLADIFR 405 (1674)
Q Consensus 384 R~RDKK~~VRk---------eAm~~La~LY~ 405 (1674)
++-.-. .|.+ .++..|+.+|.
T Consensus 185 ~Vl~~~-~v~r~~K~~~fn~~~L~~l~~Ly~ 214 (330)
T PF11707_consen 185 KVLKDS-SVSRSTKCKLFNEWTLSQLASLYS 214 (330)
T ss_pred HhccCC-CCChhhhhhhcCHHHHHHHHHHhc
No 185
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=29.51 E-value=1.2e+02 Score=30.60 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHHHhhhhhcCCCCH---HHHHHHHHhhccCChhHHHHHHHHHHHHHHHHh
Q 000319 351 DENVRKQVVAVICDVACHALNSIPV---ETVKLVAERLRDKSVLVKRYTMERLADIFRGCC 408 (1674)
Q Consensus 351 DEkVR~aaV~ai~~la~~~l~~V~~---elL~~LaeR~RDKK~~VRkeAm~~La~LY~~~~ 408 (1674)
+...|.++|-++|.+....+-.||. ++|..|+....| ...||..+=++|+++++.+.
T Consensus 2 ~~~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~ 61 (90)
T PF11919_consen 2 DLRRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQ 61 (90)
T ss_dssp H-HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCc
Confidence 3467899999999999988888887 567889999997 78999999999999999874
No 186
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=29.33 E-value=2.4e+03 Score=32.51 Aligned_cols=161 Identities=11% Similarity=0.147 Sum_probs=79.4
Q ss_pred hHHhHHHHHHHhch--hhhhcC----CCcchHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHhcCCCCCCCCChhhHHH
Q 000319 48 ILEAMQPFLNAIVQ--PVLLKH----QDKDVKLLVATCICEITRITAPEAPYSDDVLKLIVGTFSGLKDTGGPSFGRRVV 121 (1674)
Q Consensus 48 ~~~sl~~~~~~Lv~--~~LL~H----kD~~Vr~~vAcCLadIlRI~APdAPytdd~lkli~~~f~~L~d~~~p~f~q~~~ 121 (1674)
+.+++..+.++|.. ..=|.. +---++.+|-.|..++-||-- =| ..++..+-..|-..+-..+ -.-.+|
T Consensus 1083 ~~eai~~fv~AL~~vS~eEl~~~~~pr~FsLqKLveIa~~Nm~Rirl---~W-~~iW~~l~~hf~~vg~~~n--~~va~f 1156 (1780)
T PLN03076 1083 NSEAIIDFVKALCKVSMEELRSPSDPRVFSLTKIVEIAHYNMNRIRL---VW-SSIWHVLSDFFVTIGCSEN--LSIAIF 1156 (1780)
T ss_pred CHHHHHHHHHHHHHhhHHHHccCCCCchhHHHHHHHHHHhcccchhe---eh-HhHHHHHHHHHHHhcCCcc--hhHHHH
Confidence 44566667666642 222222 222355566666666666653 11 1333344444544432222 224677
Q ss_pred HHHHHHhhhh-hheeccCCchHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhccc-ccccHHHHHHHHHhhc---CC
Q 000319 122 ILETLAKYRS-CVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEES-EDIQEDLLVILLSALG---RN 196 (1674)
Q Consensus 122 lLesLA~vks-~vlm~DL~~~~Li~~lF~~ff~iv~~~~~~~V~~~m~~IL~~vI~Es-e~vp~~lLd~IL~~l~---~~ 196 (1674)
.|.+|-.+-. |.-.-+|+.-.+=.++.+-|-.+........|...+...+..+|... +.|-. =++.||.-|. ..
T Consensus 1157 AidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkS-GWktIF~VLs~aa~d 1235 (1780)
T PLN03076 1157 AMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKS-GWKSMFMVFTTAAYD 1235 (1780)
T ss_pred HHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhc-CcHHHHHHHHHHHhC
Confidence 7777654321 21222333112222333333333333334467777777777777663 34533 3667776653 11
Q ss_pred Cc----HHHHHHHHHHHHHhhhh
Q 000319 197 KN----DTARRLAMNVIEQCAGK 215 (1674)
Q Consensus 197 ~~----~~a~~lA~~v~~~~~dk 215 (1674)
+. ..||+....|+......
T Consensus 1236 ~~e~iV~lAFetl~~I~~d~f~~ 1258 (1780)
T PLN03076 1236 DHKNIVLLAFEIIEKIIREYFPY 1258 (1780)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhh
Confidence 11 17888888887765543
No 187
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=29.24 E-value=2.4e+02 Score=33.17 Aligned_cols=97 Identities=15% Similarity=0.231 Sum_probs=62.6
Q ss_pred CChHHHHHHHHHHHHhhcCC-CCCchhhcHH-HHHHHHhhhcCC----ChhHHHHHHHHhHHHHh---cCC-CCCChHHH
Q 000319 270 DQLDTRLKAVGLVGDLFAVP-GSANNEQFHS-VFSEFLKRLTDR----IVAVRMSVLEHVKSCLL---TDP-SRADAPQI 339 (1674)
Q Consensus 270 ed~~~Rl~At~llG~mfs~~-~~~~a~~y~~-~w~~fL~R~~D~----s~~VR~~~ve~~~~iL~---s~p-~~~~~~eI 339 (1674)
.....++.+.+++..||+.+ +...+-.|.. ..-.-+...... ...+|+++...+-++-. .++ ..+...++
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~l 201 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSEL 201 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 78999999999999999975 4445556665 333444444443 68899999888876422 223 23333456
Q ss_pred HHHHHhhhC-C-ChhHHHHHHHHHHHHhh
Q 000319 340 LTALCDRLL-D-FDENVRKQVVAVICDVA 366 (1674)
Q Consensus 340 i~~L~~rL~-D-~DEkVR~aaV~ai~~la 366 (1674)
+..+.+-+. . .|+.+....+.+++.+.
T Consensus 202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~ 230 (268)
T PF08324_consen 202 LSSIIEVLSREESDEEALYRLLVALGTLL 230 (268)
T ss_dssp HHHHHHHCHCCHTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHh
Confidence 776666332 2 46666666677777776
No 188
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=29.11 E-value=1.1e+03 Score=32.70 Aligned_cols=183 Identities=14% Similarity=0.065 Sum_probs=101.9
Q ss_pred HHhhhccccChhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcC-cc-ccHHHHHHHHhhccccchHHHHHHHH
Q 000319 589 SMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLL-LG-GTEEELVNLLKEENEIIKEGILHVLA 666 (1674)
Q Consensus 589 l~RsS~lifNks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~l-Fk-~~v~~Li~lL~~~~~~~~~~aLkiLa 666 (1674)
+-|++-+.++--.||.|+..+..- +--..++-+++-|..||+.+|.- ++ +.+...+.+|.-=...+-..||-|.+
T Consensus 243 lP~S~a~vV~~~aIPvl~~kL~~I---eyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~Alaiaa 319 (1051)
T KOG0168|consen 243 LPRSSAIVVDEHAIPVLLEKLLTI---EYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAA 319 (1051)
T ss_pred ccchhheeecccchHHHHHhhhhh---hhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347777777777888888776421 11124566788899999999853 32 22222222222111113456888888
Q ss_pred HhhcchhhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCcc-------chHHHHHHHHHHhhhhc--C-CCc
Q 000319 667 KAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGL-------KSLSVLYKRLVDMLEEK--T-HLP 736 (1674)
Q Consensus 667 k~~k~i~e~~~~~~s~l~~~L~~lal~Gtp~qAKyAvr~Laa~~~~~~~-------~~~~~L~~~L~~~L~~~--~-~l~ 736 (1674)
++.+.++..-+..--...+.|..+=.+-+.+-.-++.-|++.+...... .+-.+|++++..-|.-. . ..+
T Consensus 320 N~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~ 399 (1051)
T KOG0168|consen 320 NCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNG 399 (1051)
T ss_pred HHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCccccccc
Confidence 8888765432211123466777777777777777787887776654321 11134455554444311 1 223
Q ss_pred hHHHH---HHHHHhhcccccccchHHHHHHHHHhhhcccCc
Q 000319 737 AVLQS---LGCIAQTAMPVFETRESEIEEFIKSKILRCSNK 774 (1674)
Q Consensus 737 t~L~s---L~~Iaq~ap~vfe~~~~eI~~fIik~IL~~~~~ 774 (1674)
++... |..++--.|..|.+....=+..+++.||.....
T Consensus 400 ~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~ 440 (1051)
T KOG0168|consen 400 TYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSK 440 (1051)
T ss_pred chhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCc
Confidence 33233 333333358888876443344456788877654
No 189
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.57 E-value=1.7e+03 Score=30.56 Aligned_cols=124 Identities=19% Similarity=0.134 Sum_probs=99.4
Q ss_pred HHHHHHHHhhcchhhhhhhhcccccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHH
Q 000319 242 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 321 (1674)
Q Consensus 242 h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve 321 (1674)
|.-+.-.-..-|++=...++.+-..-..++..+|..|.+++|.+= . ...-.-++...++-.+|..+.||...+-
T Consensus 70 yLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~-v-----~~i~ey~~~Pl~~~l~d~~~yvRktaa~ 143 (734)
T KOG1061|consen 70 YLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLR-V-----DKITEYLCDPLLKCLKDDDPYVRKTAAV 143 (734)
T ss_pred HHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEe-e-----hHHHHHHHHHHHHhccCCChhHHHHHHH
Confidence 444444456689988889999999999999999999999998543 2 2222347788889999999999999999
Q ss_pred HhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcC
Q 000319 322 HVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN 371 (1674)
Q Consensus 322 ~~~~iL~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~ 371 (1674)
++...-.-++..-...-++..|..-+.|.+.-|=..|+.++..+.....+
T Consensus 144 ~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 144 CVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred HHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence 98876666666545567889999999999999999999999999876653
No 190
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=28.50 E-value=4.5e+02 Score=27.93 Aligned_cols=81 Identities=7% Similarity=0.027 Sum_probs=57.8
Q ss_pred HHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcC-----CCCHHHHHHHHHhhccC---ChhHHHHH
Q 000319 325 SCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN-----SIPVETVKLVAERLRDK---SVLVKRYT 396 (1674)
Q Consensus 325 ~iL~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~-----~V~~elL~~LaeR~RDK---K~~VRkeA 396 (1674)
+++...+ ....+.+.+|.+||...+.+|.+.|+..+-.+....-. ..+.+.+..|...+..+ ...||..+
T Consensus 26 d~I~~~~--~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~ki 103 (133)
T cd03561 26 DLINLKP--NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKA 103 (133)
T ss_pred HHHhCCC--CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 4444443 34679999999999999999999999988777654322 23446666666666654 46899999
Q ss_pred HHHHHHHHHHH
Q 000319 397 MERLADIFRGC 407 (1674)
Q Consensus 397 m~~La~LY~~~ 407 (1674)
+..+...+..+
T Consensus 104 l~ll~~W~~~f 114 (133)
T cd03561 104 LELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHh
Confidence 88877666544
No 191
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=28.08 E-value=5.6e+02 Score=34.57 Aligned_cols=148 Identities=15% Similarity=0.132 Sum_probs=97.0
Q ss_pred cchhhhhhhhcccccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCC
Q 000319 252 SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDP 331 (1674)
Q Consensus 252 ~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p 331 (1674)
.++.-..++|.|-.-+.+-|..+|..-.+-+-+.+..-. =-.....+|-.+..=|+|.++.+|..-|++...+.-.-.
T Consensus 324 ~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt--~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~ 401 (690)
T KOG1243|consen 324 EEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLT--KQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS 401 (690)
T ss_pred ccccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcC--HHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc
Confidence 444667788999988999999999887666554443211 112445788899999999999999999988865443222
Q ss_pred CCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHh-hccCChhHHHHHHHHHH
Q 000319 332 SRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAER-LRDKSVLVKRYTMERLA 401 (1674)
Q Consensus 332 ~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR-~RDKK~~VRkeAm~~La 401 (1674)
.+..-.|++++|.+.-.|.+-.+|.-++..++.++...-..+-..+|-.---| +||-=..=|..++..|+
T Consensus 402 ~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~ 472 (690)
T KOG1243|consen 402 KRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALA 472 (690)
T ss_pred hhhhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHh
Confidence 22344689999999888999999998877777766542111111122112223 55555555555554443
No 192
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=28.05 E-value=4.4e+02 Score=29.72 Aligned_cols=66 Identities=14% Similarity=0.179 Sum_probs=55.3
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHHhHHHHhc---CCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh
Q 000319 299 SVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT---DPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA 369 (1674)
Q Consensus 299 ~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s---~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~ 369 (1674)
..|...|.-+.+.+..||...++.+.-++.. ||. +.+..|.-..-|++..||..|.....++....
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~-----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK-----QCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH-----HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 3577888888999999999999999988864 553 78999999999999999999988887775433
No 193
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=27.19 E-value=6e+02 Score=34.35 Aligned_cols=153 Identities=18% Similarity=0.299 Sum_probs=94.3
Q ss_pred CChhhHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCCC-----c----------H-----------HHHHHHHHHHHH
Q 000319 158 DHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNK-----N----------D-----------TARRLAMNVIEQ 211 (1674)
Q Consensus 158 ~~~~~V~~~m~~IL~~vI~Ese~vp~~lLd~IL~~l~~~~-----~----------~-----------~a~~lA~~v~~~ 211 (1674)
..|.-+.+.|-|...+.=-.++...+.++.-|=..|..+. + + .--+|..+||+-
T Consensus 454 K~PPGims~ldD~~At~Ha~~~~aDqa~~qrLn~~~~s~phF~~~s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieL 533 (1106)
T KOG0162|consen 454 KRPPGIMSALDDVCATAHADSEGADQALLQRLNKLFGSHPHFESRSNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIEL 533 (1106)
T ss_pred cCCchHHHHHHHHHHHhccccchhHHHHHHHHHHHhcCCCccccccCceEEEEeccceeeecccccccchhHHHHHHHHH
Confidence 3477788888888888888888888887776654553221 0 0 224667777665
Q ss_pred hhhhhhHHHHHHHHHhhcCCC--CCCC--Cc--chHHHHHHHHHhhcchhhhhhhhcccccccCCChHHH-HHHHHHHHH
Q 000319 212 CAGKLEAGIKQFLVSSMSGDS--RPGH--SH--IDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTR-LKAVGLVGD 284 (1674)
Q Consensus 212 ~~dkL~~~I~q~f~~~l~~d~--~~~~--~~--~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~R-l~At~llG~ 284 (1674)
-...=.+.++..|-+-+..++ .+.. .. ..+.+|+-.|.+|.|..+--+=|.=+- --.|=++-| +.-++-||
T Consensus 534 m~ts~~~Fl~slFPe~v~~dskrRP~Tag~kIkkqANdLVeTLmKc~P~YIR~IKPNeTK-~pnD~ee~~V~HQveYLG- 611 (1106)
T KOG0162|consen 534 MQTSENPFLKSLFPENVDADSKRRPPTAGDKIKKQANDLVETLMKCQPHYIRCIKPNETK-SPNDWEESRVKHQVEYLG- 611 (1106)
T ss_pred HhccchHHHHHhCchhhcccccCCCCCchhhHHhhHHHHHHHHHhcCcceeEeeCCCCCC-CCccHHHHHHHHHHHhcc-
Confidence 555555555555544443332 1222 22 248999999999999999888887322 222223333 33445444
Q ss_pred hhcCCC-C---CchhhcHHHHHHHHhhhcCCChhH
Q 000319 285 LFAVPG-S---ANNEQFHSVFSEFLKRLTDRIVAV 315 (1674)
Q Consensus 285 mfs~~~-~---~~a~~y~~~w~~fL~R~~D~s~~V 315 (1674)
... . -..=+|+.+|..|+.||.=.+|.-
T Consensus 612 ---LqENiRvRRAGfAYRr~F~kF~qRyailsp~t 643 (1106)
T KOG0162|consen 612 ---LQENIRVRRAGFAYRRAFDKFAQRYAILSPQT 643 (1106)
T ss_pred ---hhhheeehhhhhHHHHHHHHHHHHheecCccc
Confidence 221 0 112369999999999998888775
No 194
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=26.89 E-value=1.4e+03 Score=29.09 Aligned_cols=90 Identities=11% Similarity=0.168 Sum_probs=51.7
Q ss_pred hHHHHhhcCCcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--CCcHHH----H
Q 000319 441 TIESVLCGSLFPTGFS--VKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQD--GDAPEI----Q 512 (1674)
Q Consensus 441 lVE~vL~e~LlP~~~~--~~~R~~~ll~l~~~LD~~~~kal~~il~~k~~l~~~~~~~l~l~~~~~~--~d~~ei----~ 512 (1674)
.|+.+ +..++|..++ +++|--.++..+..+.... ..-. .++-+...+++...+.. ...+++ .
T Consensus 237 f~~y~-n~~~ip~~fdkl~e~rkL~lLK~lAEMss~t-----taq~----a~q~Lpsi~elLk~yMpa~kt~ee~~fsyv 306 (460)
T KOG2213|consen 237 FVEYL-NKHIIPHHFDKLTEERKLDLLKALAEMSSYT-----TAQA----ARQMLPSIVELLKEYMPAPKTGEEMQFSYV 306 (460)
T ss_pred HHHHH-HhhhcccccccchHHHHHHHHHHHHHhCccc-----hHHH----HHHHHHHHHHHHHHhcccCCccHHHHHHHH
Confidence 45444 7788887554 5778777777766654432 1111 12223333333332221 122332 3
Q ss_pred HHHHHHHHHHHhhcCCchHHHHHHHHHH
Q 000319 513 KKILFCFRVMSRSFAEPAKAEENFLILD 540 (1674)
Q Consensus 513 ~kL~~~I~~Ls~~fPDp~Ka~~~L~kf~ 540 (1674)
..+....++|....||.+++..+-+++-
T Consensus 307 EClly~~h~Lg~k~pn~t~ak~d~K~L~ 334 (460)
T KOG2213|consen 307 ECLLYALHHLGHKKPNFTNAKCDAKKLK 334 (460)
T ss_pred HHHHHHHHHHhhcCcchhhhhcchhhhc
Confidence 3566778888888999999988877765
No 195
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=26.47 E-value=1.2e+03 Score=32.36 Aligned_cols=164 Identities=15% Similarity=0.232 Sum_probs=97.3
Q ss_pred HccccCCCCCCHHHHHHHHHHHHHHHhhcCCCCch--------hhHHhHHHHHHHhchhhhhcCCCcchHHHHHHHHHHH
Q 000319 12 VGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPA--------SILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEI 83 (1674)
Q Consensus 12 ~g~kL~~~~~s~~eLlkrLk~L~~~Ls~~dQ~~~~--------~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadI 83 (1674)
+++++.+..++..+.-+++= ... .|.++. .+=++..++...|.+.. =.-.|.++.-..|.|+++
T Consensus 44 V~~~IisldL~v~~Vy~~vW-----~~~-~~~~pM~v~YR~~Gl~geAtE~~v~~l~~~~-~~~~d~e~~~~~~~v~~~- 115 (802)
T PF13764_consen 44 VNNKIISLDLPVRDVYEKVW-----KPN-NQNPPMRVVYRMRGLDGEATEEFVESLEDDS-EEEEDPEQEFKIASVLAE- 115 (802)
T ss_pred ecCeeecCCCcHHHHHHHHh-----ccc-CCCCCeEEEEeecCCCCccchhhHhhccCcc-ccccCHHHHHHHHHHhhc-
Confidence 34555566666666666653 222 333332 23356667777775542 112455556666666543
Q ss_pred hhhcCCCCCCChhHHHHHHHHhcCCCCCCC--CChhhHHHHHHHHHhhhhhh-eeccCCchHHHHHHHHHHHHhhcCCCh
Q 000319 84 TRITAPEAPYSDDVLKLIVGTFSGLKDTGG--PSFGRRVVILETLAKYRSCV-VMLDLECDELVNEMYSTFFAVASDDHP 160 (1674)
Q Consensus 84 lRI~APdAPytdd~lkli~~~f~~L~d~~~--p~f~q~~~lLesLA~vks~v-lm~DL~~~~Li~~lF~~ff~iv~~~~~ 160 (1674)
..-|..+++.+..+.|..+ .....-+.||....+|+.+- .++.+.+=+.+...++.+|..-.+...
T Consensus 116 -----------~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~ 184 (802)
T PF13764_consen 116 -----------CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQ 184 (802)
T ss_pred -----------CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCcccccc
Confidence 1234445555555555332 34556677788888877765 445566667788888888875443445
Q ss_pred hhHHHHHHHHHHHHhccccc--c---------------cHHHHHHHHHhhc
Q 000319 161 ESVLSSMQTIMIVLLEESED--I---------------QEDLLVILLSALG 194 (1674)
Q Consensus 161 ~~V~~~m~~IL~~vI~Ese~--v---------------p~~lLd~IL~~l~ 194 (1674)
..+..-++.||..|+.|+.. + ..+.++.+|+++.
T Consensus 185 ~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~ 235 (802)
T PF13764_consen 185 AEIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLN 235 (802)
T ss_pred chHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhc
Confidence 56667777788777777543 2 4566888888885
No 196
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=26.02 E-value=1.9e+03 Score=30.25 Aligned_cols=214 Identities=18% Similarity=0.218 Sum_probs=105.3
Q ss_pred cHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhhhhhhHH----HHHHHHHhhcC---CCCCC--CCcchHHHHHHHHH---
Q 000319 182 QEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAG----IKQFLVSSMSG---DSRPG--HSHIDYHEVIYDVY--- 249 (1674)
Q Consensus 182 p~~lLd~IL~~l~~~~~~~a~~lA~~v~~~~~dkL~~~----I~q~f~~~l~~---d~~~~--~~~~~~h~Li~eL~--- 249 (1674)
-+.++..||..| .+++.-+++=|.++|...+-.|..+ ...++..++++ +..+. .+.+.+..-|+.++
T Consensus 797 lpqi~stiL~rL-nnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~ 875 (1172)
T KOG0213|consen 797 LPQICSTILWRL-NNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMT 875 (1172)
T ss_pred hHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhcccc
Confidence 345555666555 4455566777777777766666655 55566555542 11211 12223333333332
Q ss_pred hhcchhhhhhhhcccccccCCChHHHHHHHHHHHHhhcCCCCCchh--hcHHHHHHHHhhhcCCChhHHHHHHHHhHHHH
Q 000319 250 RCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE--QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCL 327 (1674)
Q Consensus 250 ~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~a~--~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL 327 (1674)
+-.|- +..++|-|..-|++-...+--..+.+||.+-- .|..++. ..--+-=+.|.=..--.-+||.+.+..-+.|-
T Consensus 876 km~pP-i~dllPrltPILknrheKVqen~IdLvg~Iad-rgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Ia 953 (1172)
T KOG0213|consen 876 KMTPP-IKDLLPRLTPILKNRHEKVQENCIDLVGTIAD-RGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIA 953 (1172)
T ss_pred ccCCC-hhhhcccchHhhhhhHHHHHHHHHHHHHHHHh-cCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 11222 56778889999999999999999999997653 3444432 11111111122122223456666666655443
Q ss_pred hcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 000319 328 LTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFR 405 (1674)
Q Consensus 328 ~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~VRkeAm~~La~LY~ 405 (1674)
..-. -.+++..|..-|.=.|-.-|.-+--+|+=++. ..-|..+|=+|-.--|--...|.+=.+..|+-+|.
T Consensus 954 kaIG----PqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE---~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~Fe 1024 (1172)
T KOG0213|consen 954 KAIG----PQDVLATLLNNLKVQERQNRVCTTVAIAIVAE---TCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFE 1024 (1172)
T ss_pred HhcC----HHHHHHHHHhcchHHHHHhchhhhhhhhhhhh---hcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHH
Confidence 3211 12455555544433333333221112211111 11133333333333334445666666666666665
No 197
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.91 E-value=1.9e+03 Score=30.30 Aligned_cols=94 Identities=11% Similarity=0.057 Sum_probs=69.0
Q ss_pred CChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCCh
Q 000319 311 RIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSV 390 (1674)
Q Consensus 311 ~s~~VR~~~ve~~~~iL~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~ 390 (1674)
++|-=++..+..+..++..++.. ...+.+.|..+|.--+|.|=.+|-.+|+.+.+.....+.. .+..|.--+.--++
T Consensus 220 ~~~~A~~~lir~~~~~l~~~~~~--~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p-avs~Lq~flssp~~ 296 (865)
T KOG1078|consen 220 KSPLAVCMLIRIASELLKENQQA--DSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP-AVSVLQLFLSSPKV 296 (865)
T ss_pred cchhHHHHHHHHHHHHhhhcccc--hhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch-HHHHHHHHhcCcHH
Confidence 45555666677777777766433 2478899999999999999999999999999877766655 34445555666678
Q ss_pred hHHHHHHHHHHHHHHHH
Q 000319 391 LVKRYTMERLADIFRGC 407 (1674)
Q Consensus 391 ~VRkeAm~~La~LY~~~ 407 (1674)
..|-.|+..|-++=-.+
T Consensus 297 ~lRfaAvRtLnkvAm~~ 313 (865)
T KOG1078|consen 297 ALRFAAVRTLNKVAMKH 313 (865)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 89999988876654443
No 198
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=25.82 E-value=3e+02 Score=36.61 Aligned_cols=172 Identities=13% Similarity=0.071 Sum_probs=103.0
Q ss_pred ccccccCCChHHHHHHHHHHHHhhcC---CCCCchhhcHHHHH---HHHhhhcCCChhHHHHHHHHhHH------HHhcC
Q 000319 263 LTGELLTDQLDTRLKAVGLVGDLFAV---PGSANNEQFHSVFS---EFLKRLTDRIVAVRMSVLEHVKS------CLLTD 330 (1674)
Q Consensus 263 Le~EL~sed~~~Rl~At~llG~mfs~---~~~~~a~~y~~~w~---~fL~R~~D~s~~VR~~~ve~~~~------iL~s~ 330 (1674)
...+|.+-.+..|..+.+-.--|--. .+....++.-.++. .++.- -=++..+|.+|+.+.+. +|.+.
T Consensus 336 ~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~-~~kd~~~~aaa~l~~~s~srsV~aL~tg 414 (678)
T KOG1293|consen 336 ICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLP-PIKDHDFVAAALLCLKSFSRSVSALRTG 414 (678)
T ss_pred HHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHcccc-ccccHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 35567777788887765432211110 01222233333322 22211 22467788888877654 45555
Q ss_pred CCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCH-----HHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 000319 331 PSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV-----ETVKLVAERLRDKSVLVKRYTMERLADIFR 405 (1674)
Q Consensus 331 p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~-----elL~~LaeR~RDKK~~VRkeAm~~La~LY~ 405 (1674)
+.+ .++...|..-|+||+-.|-..+.-+||.+.. .|...-. ..+..|..-+.|+-+.+|+.+...| |+
T Consensus 415 ~~~---~dv~~plvqll~dp~~~i~~~~lgai~NlVm-efs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~L---r~ 487 (678)
T KOG1293|consen 415 LKR---NDVAQPLVQLLMDPEIMIMGITLGAICNLVM-EFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVL---RH 487 (678)
T ss_pred Ccc---chhHHHHHHHhhCcchhHHHHHHHHHHHHHh-hcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHH---HH
Confidence 544 3688888889999999999999999998754 2222222 2356788999999999998776665 44
Q ss_pred HHhhhccCCCccccccccchHHHhhhhccCCCCchhHHHH
Q 000319 406 GCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESV 445 (1674)
Q Consensus 406 ~~~~~~~~~~~~~~~~~wIPskIL~~~Y~nD~~~~lVE~v 445 (1674)
..+.. +...-..-+.-||...+.+ |+||++....|..
T Consensus 488 l~f~~--de~~k~~~~~ki~a~~i~~-l~nd~d~~Vqeq~ 524 (678)
T KOG1293|consen 488 LMFNC--DEEEKFQLLAKIPANLILD-LINDPDWAVQEQC 524 (678)
T ss_pred HHhcc--hHHHHHHHHHHhhHHHHHH-HHhCCCHHHHHHH
Confidence 33321 0001123367889888876 5888764444444
No 199
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=24.90 E-value=2.2e+03 Score=30.59 Aligned_cols=385 Identities=15% Similarity=0.196 Sum_probs=168.6
Q ss_pred HHHhhhcCCCCCCChh---------HHH-------HHHHHhcCCCC---CCCC-ChhhHH-HHHHHH----------Hhh
Q 000319 81 CEITRITAPEAPYSDD---------VLK-------LIVGTFSGLKD---TGGP-SFGRRV-VILETL----------AKY 129 (1674)
Q Consensus 81 adIlRI~APdAPytdd---------~lk-------li~~~f~~L~d---~~~p-~f~q~~-~lLesL----------A~v 129 (1674)
+||+|-+.|+-|+..- ..+ -|...|....| |+.+ -+.+.+ .++.++ -.-
T Consensus 29 ~e~~rel~~e~P~~~R~rmi~~i~~~~k~~~~~e~aI~~lw~~~~DlI~pN~~Ae~R~~vl~l~kR~v~TQ~~~l~I~R~ 108 (1697)
T KOG3687|consen 29 AEILRELSMECPLNNRIRMIGQICEVAKTKKFEEHAIEALWKAVADLIQPNRTAEARHAVLALLKRIVQTQGERLGILRA 108 (1697)
T ss_pred HHHHhhcCccCcHHHHHHHHHHHHhhHhhhcccHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 6899999999998752 111 34444433333 4333 232222 223332 223
Q ss_pred hhhheeccCCchHH---HHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCCC----cHHHH
Q 000319 130 RSCVVMLDLECDEL---VNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNK----NDTAR 202 (1674)
Q Consensus 130 ks~vlm~DL~~~~L---i~~lF~~ff~iv~~~~~~~V~~~m~~IL~~vI~Ese~vp~~lLd~IL~~l~~~~----~~~a~ 202 (1674)
+.|.++-|-|+++= ..++.+++-| ++.|=..++.-+++.|..-|+.. +..+.|+++.+.+.-+. +..+.
T Consensus 109 ~FF~vI~~~p~~edL~~rLe~L~~LTD--nG~~It~~Ee~iG~f~l~W~~~~--l~~~~L~~lvnl~kfn~~~lD~~i~~ 184 (1697)
T KOG3687|consen 109 LFFKVIKDYPSNEDLHERLEVLKALTD--NGRHITYLEEELGDFVLQWMDVG--LSSEFLLVLVNLVKFNSCYLDEYIAR 184 (1697)
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHhh--CCccccchHHHHHHHHHHHHHhh--cccHHHHHHHHHHHhcccchhHHHHH
Confidence 34445555554322 2233333222 23345566777777777766664 66677777776553221 22443
Q ss_pred ---HHHHHHHHHhhhhhhHHHHHHHHHhhcCCCC-CCCCcchHHHHHHHH------Hhhcc---hhhhhhhh--------
Q 000319 203 ---RLAMNVIEQCAGKLEAGIKQFLVSSMSGDSR-PGHSHIDYHEVIYDV------YRCSP---QILSGVVP-------- 261 (1674)
Q Consensus 203 ---~lA~~v~~~~~dkL~~~I~q~f~~~l~~d~~-~~~~~~~~h~Li~eL------~~~~P---~lL~~ViP-------- 261 (1674)
++++.+|..++..+.-.+-+-+ ++..+=.. ++.. .-.+|..| -.+|| .++-+.++
T Consensus 185 l~vq~~c~lc~~t~~~i~~~~l~~l-~~v~~y~~~P~e~---lpQ~I~tlcrt~nv~~~C~~~~k~m~nllgthlg~~~~ 260 (1697)
T KOG3687|consen 185 LMVQMICLLCVRTASSVDIEVLQVL-DAVVCYNCLPAES---LPQFIVTLCRTINVKELCEPCWKLMRNLLGTHLGHSAI 260 (1697)
T ss_pred HHHHHHHHHHHhhccccchhhhhhh-hhheeeeecccch---HHHHHHHHhcccchhhcCchHHHHHHhhhhcccchHHH
Confidence 4555555555544333332222 22211100 1111 11222211 22333 22222222
Q ss_pred -----cccccccCCChHHHHHHHHHHHHhh-cCCCCCchhhcH-HHHHHHHhhhcCCC--------hhHHHHHHHHhHHH
Q 000319 262 -----YLTGELLTDQLDTRLKAVGLVGDLF-AVPGSANNEQFH-SVFSEFLKRLTDRI--------VAVRMSVLEHVKSC 326 (1674)
Q Consensus 262 -----~Le~EL~sed~~~Rl~At~llG~mf-s~~~~~~a~~y~-~~w~~fL~R~~D~s--------~~VR~~~ve~~~~i 326 (1674)
.+++--.-||..+=..||=.+|.-+ ++...--...|+ ++|.+||.-+--.. ++||+.+.+.-.+.
T Consensus 261 ~~mc~~~~drA~~eDa~llrgavf~~~m~~~g~~~~~~~~~~~T~v~~~fL~a~DS~~~iV~yeVIlsi~~~i~k~~l~~ 340 (1697)
T KOG3687|consen 261 YNMCHLMEDRAYMEDAPLLRGAVFFVGMALWGAHRLYSLRNSPTSVFPSFLQAMDSPNEVVSYEVILSITRLIKKYELQV 340 (1697)
T ss_pred HHHHhhhhhhhhhccchhhcchhhhcchhhcccceeeeecccchhhHHHHHHHhcCccceEEEEEeehhhHHHHHHHHHH
Confidence 1233344566666666777777544 332211123444 47888886655433 45565555543322
Q ss_pred HhcCCCCCChHHHHHHHHhhhCCChhH-HH---HHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCCh------------
Q 000319 327 LLTDPSRADAPQILTALCDRLLDFDEN-VR---KQVVAVICDVACHALNSIPVETVKLVAERLRDKSV------------ 390 (1674)
Q Consensus 327 L~s~p~~~~~~eIi~~L~~rL~D~DEk-VR---~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~------------ 390 (1674)
+.+. ..-.|+..+...+.=.|+- .| ...+..|..++..+--+-+.|-+-.|.||+.|+++
T Consensus 341 ~~wD----~il~i~S~~vS~~~Y~~~~~l~~iFh~~~~~ve~L~~qn~~~g~~er~~~lier~ad~rpe~sVlnli~Yr~ 416 (1697)
T KOG3687|consen 341 VAWD----ILLNIISRLLSQLQYLDSPELRTIFHDLLTTVEELCDQNEFHGSQERYFELVERCADQRPESSVLNLISYRA 416 (1697)
T ss_pred HHHH----HHHHHHHHHHHHhhhhcchhhhhHHHhhhhHHHHHHhhhhhcchHHHHHHHHHHhhhcCchHHHHHHHHHhh
Confidence 2211 0001111111111111110 01 01112222333333112344555567788888887
Q ss_pred ----hHHHHHHHHHHHHHHHHhhhccCCCcc---ccccccchHHHhhhhccCCCCchhHHHHhhcCC--cCCCCCHHHH-
Q 000319 391 ----LVKRYTMERLADIFRGCCLRNFNGSIN---QNEFEWIPGKILRCLYDKDFGSDTIESVLCGSL--FPTGFSVKDR- 460 (1674)
Q Consensus 391 ----~VRkeAm~~La~LY~~~~~~~~~~~~~---~~~~~wIPskIL~~~Y~nD~~~~lVE~vL~e~L--lP~~~~~~~R- 460 (1674)
.+|--++..|+.+-..++...+.+... ...|..||..- +.+|.. +.+-+|..-.+ +|++.+..-|
T Consensus 417 ~~V~A~R~gwiq~l~~lm~r~~r~~s~~~Vrik~~~~l~~~~l~n-r~~yee----EIL~~VvL~~lshi~L~~~~qvr~ 491 (1697)
T KOG3687|consen 417 QSVHAARDGWIQNLQALMERFFRSESRGAVRIKVLDVLSFVLLIN-RQFYEE----EILNSVVLSQLSHIPLDKDHQVRK 491 (1697)
T ss_pred hccCcCCchHHHHHHHHHHHHHHhcccceEEEeeHHHHHHHHhhh-hhhhHH----HhhhheeeEeeccccccchhHHHH
Confidence 456677778887777776544444322 22344444322 222321 23333332223 3444444444
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHH
Q 000319 461 --VRHWVRIFSGFDRIEMKALEKI 482 (1674)
Q Consensus 461 --~~~ll~l~~~LD~~~~kal~~i 482 (1674)
.++++++..+-|.+....+..|
T Consensus 492 l~~~~l~N~a~~C~t~~~~~lldi 515 (1697)
T KOG3687|consen 492 LATQLLVNLAEGCHTHHFNSLLDI 515 (1697)
T ss_pred HHHHHHHHHHhhcchhcchhHHHH
Confidence 3455566555555444333333
No 200
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=24.77 E-value=4e+02 Score=32.69 Aligned_cols=125 Identities=10% Similarity=0.186 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHhcccc-------cccHHHHHHHHHhhcCC----CcHHHHHHHHHHHHHhhhhhhHHHHHHHHHh----
Q 000319 163 VLSSMQTIMIVLLEESE-------DIQEDLLVILLSALGRN----KNDTARRLAMNVIEQCAGKLEAGIKQFLVSS---- 227 (1674)
Q Consensus 163 V~~~m~~IL~~vI~Ese-------~vp~~lLd~IL~~l~~~----~~~~a~~lA~~v~~~~~dkL~~~I~q~f~~~---- 227 (1674)
|...++.++...|+-++ .+=+.+++.+|.-...+ +....-.+...||++-.+.+.+.+.+.+..+
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~T 122 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECT 122 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 44555555556665444 22234444444322211 2235667888888888888777777776543
Q ss_pred ---hcCCCCC-CCCcchHHHHHHHHHhhcchhhh--------hhhhcccccccCCChHHHHHHHHHHHHhhc
Q 000319 228 ---MSGDSRP-GHSHIDYHEVIYDVYRCSPQILS--------GVVPYLTGELLTDQLDTRLKAVGLVGDLFA 287 (1674)
Q Consensus 228 ---l~~d~~~-~~~~~~~h~Li~eL~~~~P~lL~--------~ViP~Le~EL~sed~~~Rl~At~llG~mfs 287 (1674)
+..|-.. .+-....+.|+..+.+.||..|. .++-.+..-+++.+.++-..+.+++..|+.
T Consensus 123 l~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~ 194 (319)
T PF08767_consen 123 LPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLN 194 (319)
T ss_dssp HHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 3333111 11123578899988888777665 455666677778888888888888888885
No 201
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=24.12 E-value=27 Score=40.80 Aligned_cols=18 Identities=39% Similarity=0.577 Sum_probs=10.9
Q ss_pred cccccccCCCCCCccccc
Q 000319 1606 SREEANEDGKSDSEGNEE 1623 (1674)
Q Consensus 1606 ~~~~~~~~~~~d~~~~~~ 1623 (1674)
+++++++++++|+++.++
T Consensus 244 s~~d~d~e~esd~de~Ee 261 (303)
T KOG3064|consen 244 SDEDSDSEDESDSDEIEE 261 (303)
T ss_pred cccccccccCCchhhHHH
Confidence 555656666666665543
No 202
>PF02237 BPL_C: Biotin protein ligase C terminal domain; InterPro: IPR003142 This C-terminal domain has an SH3-like barrel fold, the function of which is unknown. It is found associated with prokaryotic bifunctional transcriptional repressors [] and eukaryotic enzymes involved in biotin utilization [, ]. In Escherichia coli the biotin operon repressor (BirA) is a bifunctional protein. BirA acts both as the acetyl-coA carboxylase biotin holoenzyme synthetase (6.3.4.15 from EC) and as the biotin operon repressor. DNA sequence analysis of mutations indicates that the helix-turn-helix DNA binding region is located at the N terminus while mutations affecting enzyme function, although mapping over a large region, are found mainly in the central part of the protein's primary sequence [].; GO: 0006464 protein modification process; PDB: 3RUX_A 2CGH_A 3L1A_B 3L2Z_A 1HXD_A 1BIB_A 2EWN_B 1BIA_A 2EJ9_A 3FJP_A ....
Probab=23.13 E-value=2e+02 Score=25.29 Aligned_cols=39 Identities=15% Similarity=0.217 Sum_probs=31.1
Q ss_pred ccceEEEecCCCCceEEEEEEeecCCCCeeEEEccCCcceee
Q 000319 1376 IGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVL 1417 (1674)
Q Consensus 1376 vG~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdDgd~E~l 1417 (1674)
+|++|+|.. ....|.|.+...|+. +.=.|..+||..+.+
T Consensus 2 lG~~V~v~~--~~~~~~G~~~gId~~-G~L~v~~~~g~~~~i 40 (48)
T PF02237_consen 2 LGQEVRVET--GDGEIEGIAEGIDDD-GALLVRTEDGSIRTI 40 (48)
T ss_dssp TTSEEEEEE--TSCEEEEEEEEEETT-SEEEEEETTEEEEEE
T ss_pred CCCEEEEEE--CCeEEEEEEEEECCC-CEEEEEECCCCEEEE
Confidence 699999999 445679999999875 788888888855444
No 203
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=22.72 E-value=3.2e+02 Score=30.33 Aligned_cols=76 Identities=16% Similarity=0.104 Sum_probs=45.2
Q ss_pred hhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhH
Q 000319 313 VAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLV 392 (1674)
Q Consensus 313 ~~VR~~~ve~~~~iL~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~V~~elL~~LaeR~RDKK~~V 392 (1674)
-..|+.|+-.+..+.. .....++++.+...+.|.+.-||.++--++.+++.. -|..++..+.....+.....
T Consensus 120 ~~rR~~~~~~~~~~~~----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~----~~~~v~~~l~~~~~~~~~~t 191 (197)
T cd06561 120 WVRRAAIVLLLRLIKK----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK----DPERVIAFLEKNGLSMPRLT 191 (197)
T ss_pred HHHHHHHHHHHHHHHh----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh----CHHHHHHHHHHHHHhCChHH
Confidence 3455566666655444 112456777777777778888888887777777766 34455555544444444444
Q ss_pred HHHH
Q 000319 393 KRYT 396 (1674)
Q Consensus 393 RkeA 396 (1674)
.++|
T Consensus 192 ~r~a 195 (197)
T cd06561 192 LRYA 195 (197)
T ss_pred HHHH
Confidence 4444
No 204
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=22.31 E-value=6.4e+02 Score=27.47 Aligned_cols=74 Identities=18% Similarity=0.129 Sum_probs=55.4
Q ss_pred CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh-----cCCCCHHHHHHHHHhhcc-CChhHHHHHHHHHHHHHHHH
Q 000319 334 ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-----LNSIPVETVKLVAERLRD-KSVLVKRYTMERLADIFRGC 407 (1674)
Q Consensus 334 ~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~-----l~~V~~elL~~LaeR~RD-KK~~VRkeAm~~La~LY~~~ 407 (1674)
....+.+.+|.+||...+.+|=+.|+..+-.+.... ....+.+++..|...+.+ -...||..++..+-.....+
T Consensus 33 ~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 33 NGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence 346799999999999999999999998887776533 233466677777666666 46789998888776644443
No 205
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=22.08 E-value=1.3e+03 Score=29.04 Aligned_cols=198 Identities=16% Similarity=0.176 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHhhhhhhHHHH----HHHHHhhcCCCCCCCCcchHHHHHHHHHhh-------cchhhhhhhhccccccc
Q 000319 200 TARRLAMNVIEQCAGKLEAGIK----QFLVSSMSGDSRPGHSHIDYHEVIYDVYRC-------SPQILSGVVPYLTGELL 268 (1674)
Q Consensus 200 ~a~~lA~~v~~~~~dkL~~~I~----q~f~~~l~~d~~~~~~~~~~h~Li~eL~~~-------~P~lL~~ViP~Le~EL~ 268 (1674)
+||++.+-+|..... ++..++ -|+.-.+..+....-+...+..+|+.+..+ ...++..++--.|+
T Consensus 44 a~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~--- 119 (371)
T PF14664_consen 44 AGYRILRYLISDEES-LQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEH--- 119 (371)
T ss_pred HHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhC---
Confidence 778888777766432 222221 112112222211111223477788887777 34555666666555
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCC-------CChHHHHH
Q 000319 269 TDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR-------ADAPQILT 341 (1674)
Q Consensus 269 sed~~~Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~~D~s~~VR~~~ve~~~~iL~s~p~~-------~~~~eIi~ 341 (1674)
.+...|..|.+||.++.-... .++ .+-.-+...+.-..|-..++=-.++...-++| ++|.. -+...++.
T Consensus 120 -~~D~lr~~cletL~El~l~~P-~lv-~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lL-d~p~tR~yl~~~~dL~~l~a 195 (371)
T PF14664_consen 120 -EDDRLRRICLETLCELALLNP-ELV-AECGGIRVLLRALIDGSFSISESLLDTLLYLL-DSPRTRKYLRPGFDLESLLA 195 (371)
T ss_pred -CchHHHHHHHHHHHHHHhhCH-HHH-HHcCCHHHHHHHHHhccHhHHHHHHHHHHHHh-CCcchhhhhcCCccHHHHHH
Confidence 788999999999999875421 111 11112334444445544455455555555544 44431 22334555
Q ss_pred HHHhh----hCCCh--hHHHHHHHHHHHHhhh-----hhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000319 342 ALCDR----LLDFD--ENVRKQVVAVICDVAC-----HALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 406 (1674)
Q Consensus 342 ~L~~r----L~D~D--EkVR~aaV~ai~~la~-----~~l~~V~~elL~~LaeR~RDKK~~VRkeAm~~La~LY~~ 406 (1674)
.+.+- ..+.. ++.+ .+..+|..+-. ..+..-+...++.+.+=++=..+.||+.-+..|-.+++.
T Consensus 196 pftd~~~~~~~~~~~~~~l~-~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllri 270 (371)
T PF14664_consen 196 PFTDFHYRKIKDDRELERLQ-ASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRI 270 (371)
T ss_pred hhhhhhccccccchHHHHHH-HHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCC
Confidence 55544 22222 2222 22333333322 112222336788888888888889999999999999984
No 206
>PF08605 Rad9_Rad53_bind: Fungal Rad9-like Rad53-binding; InterPro: IPR013914 In Saccharomyces cerevisiae (Baker s yeast), the Rad9 is a key adaptor protein in DNA damage checkpoint pathways. DNA damage induces Rad9 phosphorylation, and Rad53 specifically associates with this region of Rad9, when phosphorylated, via the Rad53 IPR000253 from INTERPRO domain []. There is no clear higher eukaryotic ortholog to Rad9.
Probab=21.83 E-value=1.6e+02 Score=31.78 Aligned_cols=49 Identities=16% Similarity=0.258 Sum_probs=41.3
Q ss_pred CCceEEEEEEeecCCCCeeEEEccCCcceeeecccccEEEecCCCCCCcccc
Q 000319 1387 DKQFYEGTIKSYDPIKKKHVILYDDEDVEVLRLDKERWELLDNGRKPTKKSK 1438 (1674)
Q Consensus 1387 D~~~Y~G~V~~y~~~~~~H~v~YdDgd~E~l~L~~e~~~~~~~~~~~~~~~~ 1438 (1674)
+..||.|++.+.+....+..|.++||. ..+.++.++.++-.-.+..+.+
T Consensus 21 ~~~yYPa~~~~~~~~~~~~~V~Fedg~---~~i~~~dv~~LDlRIGD~Vkv~ 69 (131)
T PF08605_consen 21 NLKYYPATCVGSGVDRDRSLVRFEDGT---YEIKNEDVKYLDLRIGDTVKVD 69 (131)
T ss_pred CCeEeeEEEEeecCCCCeEEEEEecCc---eEeCcccEeeeeeecCCEEEEC
Confidence 789999999999888878999999999 4556667888888888877665
No 207
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.62 E-value=2.1e+03 Score=31.97 Aligned_cols=125 Identities=14% Similarity=0.071 Sum_probs=75.9
Q ss_pred cccCC-ChHHHHHHHHHHHHhhcCCCCCchh-hcHHHHHHHHhhhcCC----------ChhHHHHHHHHhHHHHh-----
Q 000319 266 ELLTD-QLDTRLKAVGLVGDLFAVPGSANNE-QFHSVFSEFLKRLTDR----------IVAVRMSVLEHVKSCLL----- 328 (1674)
Q Consensus 266 EL~se-d~~~Rl~At~llG~mfs~~~~~~a~-~y~~~w~~fL~R~~D~----------s~~VR~~~ve~~~~iL~----- 328 (1674)
+|..| -+++|--|++|+-++|.++|..|.. ...+++-..+--.-|. ...+--.|.+.+--+|.
T Consensus 1004 ~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIakl 1083 (1610)
T KOG1848|consen 1004 DLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKL 1083 (1610)
T ss_pred HHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHH
Confidence 34434 4999999999999999999877654 2223333333334441 12344556665533321
Q ss_pred ---------cCCC-CCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh--cCCCCHHHH------HHHHHhhccCCh
Q 000319 329 ---------TDPS-RADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA--LNSIPVETV------KLVAERLRDKSV 390 (1674)
Q Consensus 329 ---------s~p~-~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~--l~~V~~elL------~~LaeR~RDKK~ 390 (1674)
+.+. .+.-++++..|..-+-|.-.++-.+|++++.++.... +..++.... -..++|+-.+-+
T Consensus 1084 f~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~sii~~~~ln~~~~~k~n~vf~~y~~~~~~~s 1163 (1610)
T KOG1848|consen 1084 FSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFSIIEFGKLNATFTLKINLVFINYGRFCEVSS 1163 (1610)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHHhhhccccchHHHHhhhhhhhHhhhccccc
Confidence 2222 1233466677777889999999999999999987643 445555422 144555555544
No 208
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=20.72 E-value=3e+03 Score=30.80 Aligned_cols=97 Identities=11% Similarity=0.187 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhh---cCCChhHHHHHHHHhHHHHhcCCCCCChH---------HHHHH
Q 000319 275 RLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRL---TDRIVAVRMSVLEHVKSCLLTDPSRADAP---------QILTA 342 (1674)
Q Consensus 275 Rl~At~llG~mfs~~~~~~a~~y~~~w~~fL~R~---~D~s~~VR~~~ve~~~~iL~s~p~~~~~~---------eIi~~ 342 (1674)
+..-.++|=.|-+.+.+..+-.-.....-.+.+. .|-+-..|...-+++-+|+.++|+....+ +-|-+
T Consensus 211 ~ee~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIra 290 (2195)
T KOG2122|consen 211 EEEMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRA 290 (2195)
T ss_pred HHHHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHH
Confidence 3444566666777765444433333333222222 22377899999999999999999722111 11223
Q ss_pred HHhhhCC---------ChhHHHHHHHHHHHHhhhhhcC
Q 000319 343 LCDRLLD---------FDENVRKQVVAVICDVACHALN 371 (1674)
Q Consensus 343 L~~rL~D---------~DEkVR~aaV~ai~~la~~~l~ 371 (1674)
.|.++.+ .+.-+|...|.++|.|.+.+|+
T Consensus 291 YC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFD 328 (2195)
T KOG2122|consen 291 YCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFD 328 (2195)
T ss_pred HHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhcc
Confidence 4455432 4667788888888888777765
No 209
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=20.02 E-value=6.8e+02 Score=26.67 Aligned_cols=81 Identities=12% Similarity=0.144 Sum_probs=57.8
Q ss_pred HHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh---c--CCCCHHHHHHHHHhhccCCh-h-HHHHHH
Q 000319 325 SCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA---L--NSIPVETVKLVAERLRDKSV-L-VKRYTM 397 (1674)
Q Consensus 325 ~iL~s~p~~~~~~eIi~~L~~rL~D~DEkVR~aaV~ai~~la~~~---l--~~V~~elL~~LaeR~RDKK~-~-VRkeAm 397 (1674)
+++...+ ....+.+.+|.+||...+..|=+-|+..+-.+.... | ...+.+++..|...+.++.. . ||+.++
T Consensus 26 D~i~~~~--~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil 103 (133)
T smart00288 26 DLINSTP--DGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRIL 103 (133)
T ss_pred HHHhCCC--ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3344443 346799999999999999999999988887776543 2 22355677777767776654 2 888888
Q ss_pred HHHHHHHHHH
Q 000319 398 ERLADIFRGC 407 (1674)
Q Consensus 398 ~~La~LY~~~ 407 (1674)
..+..-+..+
T Consensus 104 ~li~~W~~~f 113 (133)
T smart00288 104 ELIQEWADAF 113 (133)
T ss_pred HHHHHHHHHH
Confidence 8777766655
Done!