Query 000319
Match_columns 1674
No_of_seqs 276 out of 462
Neff 5.7
Searched_HMMs 29240
Date Tue Mar 26 16:37:26 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000319.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_98-102//hhsearch_pdb/000319hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b3u_A Protein (protein phosph 1.0 1 1 92.3 33.0 26 64-89 18-43 (588)
2 4fdd_A Transportin-1; heat rep 1.0 1 1 87.6 51.1 68 299-366 174-243 (852)
3 4fdd_A Transportin-1; heat rep 1.0 1 1 83.4 55.0 96 738-861 649-744 (852)
4 1qgr_A Protein (importin beta 1.0 1 1 82.4 50.2 298 68-404 49-394 (876)
5 1b3u_A Protein (protein phosph 1.0 1 1 79.9 32.3 17 878-894 529-545 (588)
6 1u6g_C TIP120 protein, CAND1; 1.0 1 1 79.3 46.9 47 846-897 947-994 (1230)
7 2bpt_A Importin beta-1 subunit 1.0 1 1 79.2 51.3 139 266-404 232-397 (861)
8 1u6g_C TIP120 protein, CAND1; 1.0 1 1 77.0 67.2 242 52-309 46-306 (1230)
9 2bpt_A Importin beta-1 subunit 1.0 1 1 73.7 51.8 67 339-405 225-295 (861)
10 2vgl_B AP-2 complex subunit be 1.0 1 1 69.1 34.2 222 620-887 298-522 (591)
No 1
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=92.26 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=18.6
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 21589821278888988777530499
Q 000319 64 LLKHQDKDVKLLVATCICEITRITAP 89 (1674)
Q Consensus 64 LL~HkD~~Vra~vAcCLadIlRI~AP 89 (1674)
.|.|.|..+|..++-+|+.|.+..-|
T Consensus 18 ~l~s~~~~~R~~A~~~l~~i~~~~~~ 43 (588)
T 1b3u_A 18 ELRNEDVQLRLNSIKKLSTIALALGV 43 (588)
T ss_dssp HTTCSCHHHHHHHHHTHHHHHHHSCH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHCH
T ss_conf 85062199999999719999998697
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=87.65 Aligned_cols=68 Identities=15% Similarity=0.205 Sum_probs=23.9
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC--CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 9999998300599933999999996988831999--9986789999986607971679999999999965
Q 000319 299 SVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPS--RADAPQILTALCDRLLDFDENVRKQVVAVICDVA 366 (1674)
Q Consensus 299 ~~w~~fL~R~~Dks~~VR~~~V~~~~~iL~s~p~--~~~~~eIi~~L~~rL~D~DEkVR~aaVkai~~la 366 (1674)
.++..++.-+.|.++.||...+++...++...+. .....++++.|...+.|.|+.||.+++.+++.++
T Consensus 174 ~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~ 243 (852)
T 4fdd_A 174 IMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLL 243 (852)
T ss_dssp HHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 9999999985679789999999999999864638799889999999998717997789999999999999
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=83.38 Aligned_cols=96 Identities=13% Similarity=0.152 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 88999999933143314505789999998351256766778778777861567899999999999515987666442058
Q 000319 738 VLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGID 817 (1674)
Q Consensus 738 ~L~sLa~Iak~ap~vfe~~~~eI~~fiik~ILl~~~~~~~~~~~~W~d~s~~~~aKi~aLK~Lvn~l~~~~~~~~~~~i~ 817 (1674)
....|+.|++..+..|......|..++++.+ .. +....+..-+|++..++..+-. ...+.+.
T Consensus 649 a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l--~~------------~~~~v~~~a~~alg~i~~~~~~----~~~p~~~ 710 (852)
T 4fdd_A 649 SFALLGDLTKACFQHVKPCIADFMPILGTNL--NP------------EFISVCNNATWAIGEISIQMGI----EMQPYIP 710 (852)
T ss_dssp HHHHHHHHHHHCGGGTGGGHHHHHHHHHHTC--CT------------TSHHHHHHHHHHHHHHHHHHGG----GGGGGTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CC------------CCHHHHHHHHHHHHHHHHHHHH----HHHHHHH
T ss_conf 9999999999816888987999999999876--94------------2068999999999999997117----6787899
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 89999999540376666778996677675799999999853103
Q 000319 818 DLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQW 861 (1674)
Q Consensus 818 ~ll~lL~~il~~GEi~~~~~tp~~~ksrLRLaAa~~LLKLAr~~ 861 (1674)
.++..|..++.. |. ....++-.|+.++-||++..
T Consensus 711 ~il~~L~~~l~~---------~~-~~~~~~~~a~~~igrl~~~~ 744 (852)
T 4fdd_A 711 MVLHQLVEIINR---------PN-TPKTLLENTAITIGRLGYVC 744 (852)
T ss_dssp HHHHHHHHHHTC---------SS-CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCC---------CC-CCCHHHHHHHHHHHHHHHHC
T ss_conf 999999998579---------98-87207788999999999868
No 4
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=82.45 Aligned_cols=298 Identities=10% Similarity=0.102 Sum_probs=133.8
Q ss_pred CCCCHHHHHHHHHHHHHHHCCC-------C--CCCCHHHHHHHHHH-HCCCCCCCCCCHHHHHHHHHHHHHHHHHHEECC
Q ss_conf 9821278888988777530499-------9--99974699999997-058988899871469999999974324200016
Q 000319 68 QDKDVKLLVATCICEITRITAP-------E--APYSDDVLKLIVGT-FSGLKDTGGPSFGRRVVILETLAKYRSCVVMLD 137 (1674)
Q Consensus 68 kD~~Vra~vAcCLadIlRI~AP-------d--APytdd~Lkli~~~-f~~L~d~~~p~f~q~~~LLe~LA~vks~Vlm~D 137 (1674)
.+..||.+.+.+|-..+...-+ . ...+++....|... +..|.+++... .+...+|..++..-.. .
T Consensus 49 ~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~----~ 123 (876)
T 1qgr_A 49 NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIP----V 123 (876)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGG----G
T ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHCC----C
T ss_conf 9879999999999876055434767899864406999999999999999867994788-9999999999984676----2
Q ss_pred CCCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHCCCC-----CCCHHHHHHHHHHHCCCC-CHHHHHHHHHHHH
Q ss_conf 9831899999999997323998-15199999999999960234-----453889999999613798-5789999999999
Q 000319 138 LECDELVNEMYSTFFAVASDDH-PESVLSSMQTIMIVLLEESE-----DIQEDLLVILLSALGRNK-NDTARRLAMNVIE 210 (1674)
Q Consensus 138 L~~d~Li~~lF~~ff~iv~~~~-~~~V~~~m~~IL~~iI~Ese-----~Ip~~vLd~IL~~l~~~~-~~~A~~LA~~ii~ 210 (1674)
-.-.+++..+++.+ .+.. ...+......++..+.++.. ..-..++..++..+.... +...+..|...+.
T Consensus 124 ~~w~~ll~~l~~~l----~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~ 199 (876)
T 1qgr_A 124 NQWPELIPQLVANV----TNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALL 199 (876)
T ss_dssp TCCTTHHHHHHHHH----HCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH----HCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 25688999999987----08898799999999999999874587667867999999999861679998899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 95454469999999983069999988740387999999951630343101100012357776899999999998625999
Q 000319 211 QCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG 290 (1674)
Q Consensus 211 ~~~dkL~~~I~qyf~~~l~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~ 290 (1674)
.....+...+.. +.|+ ..+++.|..-+..++..+|..|.++++.+....+
T Consensus 200 ~~~~~~~~~~~~------------------------~~~~------~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~ 249 (876)
T 1qgr_A 200 NSLEFTKANFDK------------------------ESER------HFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY 249 (876)
T ss_dssp HHGGGCHHHHTS------------------------HHHH------HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHH------------------------HHHH------HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999999998871------------------------7899------9999999987179988999999999999999869
Q ss_pred CCCHHHCH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-------------------CCCCCC----HHHHHHHHHHH
Q ss_conf 98210049-9999998300599933999999996988831-------------------999998----67899999866
Q 000319 291 SANNEQFH-SVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT-------------------DPSRAD----APQILTALCDR 346 (1674)
Q Consensus 291 s~~a~~y~-~~w~~fL~R~~Dks~~VR~~~V~~~~~iL~s-------------------~p~~~~----~~eIi~~L~~r 346 (1674)
..+....+ .++...+..+.|.+..||...+++...+... .+.... ..+++..+...
T Consensus 250 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~ 329 (876)
T 1qgr_A 250 QYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT 329 (876)
T ss_dssp GGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998877899999999963873499999999999998878767665100112477754201899999898870799987
Q ss_pred HC-------CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 07-------97167999999999996532137889888999997603689369999999999999
Q 000319 347 LL-------DFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIF 404 (1674)
Q Consensus 347 L~-------D~DEkVR~aaVkai~~la~~~l~~V~~elL~~LaeR~RDKK~~VRkeAi~~La~LY 404 (1674)
|. |.+++||.++..++..++......+-..++..+...+.|..+.||..|+..|+.+-
T Consensus 330 l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~ 394 (876)
T 1qgr_A 330 LTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCIL 394 (876)
T ss_dssp TTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTS
T ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 53133444545217999999999999987758669999999998846998289999999999997
No 5
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=79.91 Aligned_cols=17 Identities=0% Similarity=-0.056 Sum_probs=6.7
Q ss_pred CCCCHHHHHHHHHHHHH
Q ss_conf 67735689999999998
Q 000319 878 EISFPQAKKLFLSKVHQ 894 (1674)
Q Consensus 878 qD~~~~VR~~Fl~KL~k 894 (1674)
+|+.++||...+.-|..
T Consensus 529 ~d~~~~Vr~~a~~~l~~ 545 (588)
T 1b3u_A 529 GDPVANVRFNVAKSLQK 545 (588)
T ss_dssp GCSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
T ss_conf 89986279999999999
No 6
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=79.33 Aligned_cols=47 Identities=15% Similarity=0.078 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 5799999999853103-788788999998312567735689999999998674
Q 000319 846 LRLASAKAVLRLSRQW-DHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVK 897 (1674)
Q Consensus 846 LRLaAa~~LLKLAr~~-d~~I~~d~f~l~~~~~qD~~~~VR~~Fl~KL~k~L~ 897 (1674)
+|-.++.++=+|+... +.++| .+. ....+++..+|..-+.-+...+.
T Consensus 947 ~r~~~a~~lg~l~~~~~~~l~p----~l~-~~l~~~~~~~R~~~~~~l~~~~~ 994 (1230)
T 1u6g_C 947 TRNVVAECLGKLTLIDPETLLP----RLK-GYLISGSSYARSSVVTAVKFTIS 994 (1230)
T ss_dssp HHHHHHHHHHHHHHSSGGGTHH----HHT-TTSSSSCHHHHHHHHHHTGGGCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHH----HHH-HHHCCCCHHHHHHHHHHHHHHHC
T ss_conf 6899998875665067688889----999-98569978899999999999970
No 7
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=79.22 Aligned_cols=139 Identities=11% Similarity=0.096 Sum_probs=79.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC-------------C
Q ss_conf 235777689999999999862599998210049-99999983005999339999999969888319-------------9
Q 000319 266 ELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFH-SVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD-------------P 331 (1674)
Q Consensus 266 EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~-~~w~~fL~R~~Dks~~VR~~~V~~~~~iL~s~-------------p 331 (1674)
-+.+++..+|..|.+.++++....+..+....+ .+|..++....|.+..||...+++...+.... |
T Consensus 232 ~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 311 (861)
T 2bpt_A 232 ATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSP 311 (861)
T ss_dssp HHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCS
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 86599889999999999999999889999988999999999987377278999999999999987886433321035773
Q ss_pred C--CC----CHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 9--99----86789999986607971-------67999999999996532137889888999997603689369999999
Q 000319 332 S--RA----DAPQILTALCDRLLDFD-------ENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTME 398 (1674)
Q Consensus 332 ~--~~----~~~eIi~~L~~rL~D~D-------EkVR~aaVkai~~la~~~l~~V~~elL~~LaeR~RDKK~~VRkeAi~ 398 (1674)
. .. ....+++.+...+.+.| ..||.++..++..++......+-..++..+.+.+.|..+.+|..|+.
T Consensus 312 ~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~ 391 (861)
T 2bpt_A 312 LQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVM 391 (861)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 25699999999889999999987066530124686899999999999987408689999999998757997269999999
Q ss_pred HHHHHH
Q ss_conf 999999
Q 000319 399 RLADIF 404 (1674)
Q Consensus 399 ~La~LY 404 (1674)
.|+.+-
T Consensus 392 ~l~~i~ 397 (861)
T 2bpt_A 392 AFGSIM 397 (861)
T ss_dssp HHHHTS
T ss_pred HHHHHH
T ss_conf 999998
No 8
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=77.00 Aligned_cols=242 Identities=15% Similarity=0.164 Sum_probs=116.1
Q ss_pred HHHHHHHHCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH-HCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 89999983102121589821278888988777530499999974699999997-05898889987146999999997432
Q 000319 52 MQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKLIVGT-FSGLKDTGGPSFGRRVVILETLAKYR 130 (1674)
Q Consensus 52 l~~~~~~Lv~~~LL~HkD~~Vra~vAcCLadIlRI~APdAPytdd~Lkli~~~-f~~L~d~~~p~f~q~~~LLe~LA~vk 130 (1674)
...+...|+. .|.+++..||..++.||..+..-+.+ ..+..|+.. +.+|.|++.. . +......|+.+-
T Consensus 46 ~~~il~~Ll~--~L~d~~~~vR~~A~~~L~~l~~~~~~------~~~~~i~~~Ll~~l~d~~~~--v-R~~a~~~L~~i~ 114 (1230)
T 1u6g_C 46 ERKVVKMILK--LLEDKNGEVQNLAVKCLGPLVSKVKE------YQVETIVDTLCTNMLSDKEQ--L-RDISSIGLKTVI 114 (1230)
T ss_dssp HHHHHHHHHH--HTTCSSHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHHHHTTCSSSH--H-HHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHCCCCHH--H-HHHHHHHHHHHH
T ss_conf 9999999999--86699989999999999999975879------89999999999986698388--9-999999999999
Q ss_pred HHHEECCCC------CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC-C---CHHHHHHHHHHHCCCCCHH
Q ss_conf 420001698------31899999999997323998151999999999999602344-5---3889999999613798578
Q 000319 131 SCVVMLDLE------CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESED-I---QEDLLVILLSALGRNKNDT 200 (1674)
Q Consensus 131 s~Vlm~DL~------~d~Li~~lF~~ff~iv~~~~~~~V~~~m~~IL~~iI~Ese~-I---p~~vLd~IL~~l~~~~~~~ 200 (1674)
.. +.-+ ......+++..++....++....+......++..+++.... + -.+++..++..+... ...
T Consensus 115 ~~---l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~-~~~ 190 (1230)
T 1u6g_C 115 GE---LPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSP-RLA 190 (1230)
T ss_dssp HH---CC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCS-SHH
T ss_pred HH---CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHH
T ss_conf 96---79744444117889999999999987578846799999999999999827677887999999999987599-689
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHH----HHHHHHCCCCCCCCCCH
Q ss_conf 999999999995454469----9999999830699999887403879999999516303----43101100012357776
Q 000319 201 ARRLAMNVIEQCAGKLEA----GIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQI----LSGVVPYLTGELLTDQL 272 (1674)
Q Consensus 201 A~~LA~~ii~~~~dkL~~----~I~qyf~~~l~~d~~~~~~~~~~h~Li~eL~~~~P~l----L~~ViPqLe~EL~sed~ 272 (1674)
.+.-|...+...+..+.. .+..++...+..+.. ......+-+.+..|.+..|.. +..++|.+-..+..++.
T Consensus 191 vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~-~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~ 269 (1230)
T 1u6g_C 191 VRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDS-MSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDD 269 (1230)
T ss_dssp HHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCS-SCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCT
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 9999999999999856899999999999998616775-568999999999999986898998899999999998668977
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHC
Q ss_conf 8999999999986259999821004999999983005
Q 000319 273 DTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLT 309 (1674)
Q Consensus 273 ~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~ 309 (1674)
.+|..|...++.+...-+..+..-.+.+....+....
T Consensus 270 ~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~ 306 (1230)
T 1u6g_C 270 ELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLT 306 (1230)
T ss_dssp TTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_conf 8999999999999997848777768999999999827
No 9
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=73.72 Aligned_cols=67 Identities=13% Similarity=0.240 Sum_probs=23.9
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCH----HHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9999986607971679999999999965321378898----889999976036893699999999999999
Q 000319 339 ILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV----ETVKLVAERLRDKSVLVKRYTMERLADIFR 405 (1674)
Q Consensus 339 Ii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~V~~----elL~~LaeR~RDKK~~VRkeAi~~La~LY~ 405 (1674)
++..|...+.|.|++||.+++.++..++......+.. .++..+...+.|....||..|+..+..+..
T Consensus 225 ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~ 295 (861)
T 2bpt_A 225 LMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICE 295 (861)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999998659988999999999999999988999998899999999998737727899999999999998
No 10
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=1.00 E-value=1 Score=69.15 Aligned_cols=222 Identities=13% Similarity=0.119 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf 58999999999985289573444999999974102101488999999850404653201652289999888405995879
Q 000319 620 FMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQA 699 (1674)
Q Consensus 620 ~~~~a~eLL~~IS~~~P~lFk~~v~~Li~lL~~~~~~~~e~aLkiLak~~k~~~e~~~~~~s~l~~~L~~lal~Gtp~qA 699 (1674)
..-.+.+-|..+....|.+|..+...+.... +++..+...+|.+|++.+.. ++ -..+...|..|.....+.-.
T Consensus 298 vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~-~d~~~Ir~~al~~L~~l~~~--~n----v~~iv~~L~~~l~~~d~~~r 370 (591)
T 2vgl_B 298 VQYVALRNINLIVQKRPEILKQEIKVFFVKY-NDPIYVKLEKLDIMIRLASQ--AN----IAQVLAELKEYATEVDVDFV 370 (591)
T ss_dssp HHHHHHHHHHHHHHHCCSTTTTCTTTTSCCT-TSCHHHHHHHHHHHHHTCCS--ST----HHHHHHHHHHHTTSSCHHHH
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHEECC-CCHHHHHHHHHHHHHHHCCH--HH----HHHHHHHHHHHHHCCCHHHH
T ss_conf 8999999999999869698999887550036-99399999999999987786--23----99999999999865799999
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999620787321599999999986310599--8348899999993314331450578999999835125676677
Q 000319 700 KYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTH--LPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRN 777 (1674)
Q Consensus 700 KyAvk~Laa~~~~~~~~~~~~L~~~Lv~~L~~~~~--l~s~L~sLa~Iak~ap~vfe~~~~eI~~fiik~ILl~~~~~~~ 777 (1674)
+.|+++|+.++..-. .....++..|++.+..... ....+.++..|.+..|...+. ++..+..-+ ...
T Consensus 371 ~~~v~aI~~la~~~~-~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~----~v~~L~~~l-~~~----- 439 (591)
T 2vgl_B 371 RKAVRAIGRCAIKVE-QSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYES----IIATLCENL-DSL----- 439 (591)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCT----THHHHHHTT-TTC-----
T ss_pred HHHHHHHHHHHHHCH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHH----HHHHHHHHH-HHC-----
T ss_conf 999999999998574-679999999999983551689999999999999979205789----999999888-742-----
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 87787778615678999999999995159876664420588999999954037666677899667767579999999985
Q 000319 778 DTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRL 857 (1674)
Q Consensus 778 ~~~~~W~d~s~~~~aKi~aLK~Lvn~l~~~~~~~~~~~i~~ll~lL~~il~~GEi~~~~~tp~~~ksrLRLaAa~~LLKL 857 (1674)
..+ .++..++ |++|--..... ... .+|..++.. +.. .-...|+++-.++.||
T Consensus 440 -------~~~---~~~~~~~-----wilGey~~~~~-~~~---~~l~~l~~~--~~~-------~~~~vr~~~l~a~~Kl 491 (591)
T 2vgl_B 440 -------DEP---DARAAMI-----WIVGEYAERID-NAD---ELLESFLEG--FHD-------ESTQVQLTLLTAIVKL 491 (591)
T ss_dssp -------CSH---HHHHHHH-----HHHHTTCTTCT-THH---HHHHHHSTT--CSS-------SCHHHHHHHHHHHHHH
T ss_pred -------CCH---HHHHHHH-----HHHHCCCCCCC-CHH---HHHHHHHHH--HCC-------CCHHHHHHHHHHHHHH
T ss_conf -------378---9999999-----99970312136-789---999999986--645-------9888999999999999
Q ss_pred HHCCCCCCCHHHHHHHHHCCCC-CCHHHHHH
Q ss_conf 3103788788999998312567-73568999
Q 000319 858 SRQWDHKIPVDVFHLTLRTPEI-SFPQAKKL 887 (1674)
Q Consensus 858 Ar~~d~~I~~d~f~l~~~~~qD-~~~~VR~~ 887 (1674)
.........+.+.+++-....| ..++||.+
T Consensus 492 ~~~~p~~~~~~i~~ll~~~~~d~~d~evrdR 522 (591)
T 2vgl_B 492 FLKKPSETQELVQQVLSLATQDSDNPDLRDR 522 (591)
T ss_dssp HTTCCSTTHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 9619657999999999986535899679999
Done!