BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000321
(1670 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BA9|A Chain A, The Solution Structure Of Reduced Monomeric Superoxide
Dismutase, Nmr, 36 Structures
Length = 153
Score = 32.3 bits (72), Expect = 2.1, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 1054 EDNSQGV------FSSVSLPSTLYKPYEKKEGDDSLASERQTWLADESVLTHFESLKLET 1107
EDN+ G F+ +S K E+ GD + + +AD S+ SL +
Sbjct: 51 EDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGD- 109
Query: 1108 HEVVGSEIARHEALDDLEKDGNE 1130
H ++G + HE DDL K GNE
Sbjct: 110 HSIIGRTLVVHEKADDLGKGGNE 132
>pdb|1MFM|A Chain A, Monomeric Human Sod Mutant F50eG51EE133Q AT ATOMIC
Resolution
pdb|1KMG|A Chain A, The Solution Structure Of Monomeric Copper-Free Superoxide
Dismutase
pdb|1RK7|A Chain A, Solution Structure Of Apo Cu,Zn Superoxide Dismutase: Role
Of Metal Ions In Protein Folding
Length = 153
Score = 32.3 bits (72), Expect = 2.2, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 1054 EDNSQGV------FSSVSLPSTLYKPYEKKEGDDSLASERQTWLADESVLTHFESLKLET 1107
EDN+ G F+ +S K E+ GD + + +AD S+ SL +
Sbjct: 51 EDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGD- 109
Query: 1108 HEVVGSEIARHEALDDLEKDGNE 1130
H ++G + HE DDL K GNE
Sbjct: 110 HSIIGRTLVVHEKADDLGKGGNE 132
>pdb|1DSW|A Chain A, The Solution Structure Of A Monomeric, Reduced Form Of Human
Copper, Zinc Superoxide Dismutase Bearing The Same Charge
As The Native Protein
Length = 153
Score = 32.0 bits (71), Expect = 2.7, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 1054 EDNSQGV------FSSVSLPSTLYKPYEKKEGDDSLASERQTWLADESVLTHFESLKLET 1107
EDN+ G F+ +S K E+ GD + + +AD S+ SL +
Sbjct: 51 EDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGD- 109
Query: 1108 HEVVGSEIARHEALDDLEKDGNE 1130
H ++G + HE DDL K GNE
Sbjct: 110 HSIIGRTLVVHEKADDLGKGGNE 132
>pdb|2XJK|A Chain A, Monomeric Human Cu,Zn Superoxide Dismutase
Length = 153
Score = 32.0 bits (71), Expect = 2.7, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 1054 EDNSQGV------FSSVSLPSTLYKPYEKKEGDDSLASERQTWLADESVLTHFESLKLET 1107
EDN+ G F+ +S K E+ GD + + +AD S+ SL +
Sbjct: 51 EDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGD- 109
Query: 1108 HEVVGSEIARHEALDDLEKDGNE 1130
H ++G + HE DDL K GNE
Sbjct: 110 HAIIGRTLVVHEKADDLGKGGNE 132
>pdb|4BCY|A Chain A, Monomeric Human Cu,zn Superoxide Dismutase, Mutation H43f
Length = 153
Score = 32.0 bits (71), Expect = 2.7, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 1054 EDNSQGV------FSSVSLPSTLYKPYEKKEGDDSLASERQTWLADESVLTHFESLKLET 1107
EDN+ G F+ +S K E+ GD + + +AD S+ SL +
Sbjct: 51 EDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGD- 109
Query: 1108 HEVVGSEIARHEALDDLEKDGNE 1130
H ++G + HE DDL K GNE
Sbjct: 110 HAIIGRTLVVHEKADDLGKGGNE 132
>pdb|3GTT|A Chain A, Mouse Sod1
pdb|3GTT|B Chain B, Mouse Sod1
pdb|3GTT|C Chain C, Mouse Sod1
pdb|3GTT|D Chain D, Mouse Sod1
pdb|3GTT|E Chain E, Mouse Sod1
pdb|3GTT|F Chain F, Mouse Sod1
Length = 153
Score = 32.0 bits (71), Expect = 2.8, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 15/86 (17%)
Query: 1055 DNSQGVFSSVSLPSTLYKPYEKKEG----------DDSLASERQTWLADESVLTHFESLK 1104
DN+QG S+ + P+ KK G D + + +A+ S+ SL
Sbjct: 52 DNTQGCTSA----GPHFNPHSKKHGGPADEERHVGDLGNVTAGKDGVANVSIEDRVISLS 107
Query: 1105 LETHEVVGSEIARHEALDDLEKDGNE 1130
E H ++G + HE DDL K GNE
Sbjct: 108 GE-HSIIGRTMVVHEKQDDLGKGGNE 132
>pdb|3QQD|A Chain A, Human Sod1 H80r Variant, P212121 Crystal Form
pdb|3QQD|B Chain B, Human Sod1 H80r Variant, P212121 Crystal Form
Length = 154
Score = 32.0 bits (71), Expect = 3.0, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 1072 KPYEKKEGDDSLASERQTWLADESVLTHFESLKLETHEVVGSEIARHEALDDLEKDGNE 1130
K E++ GD + + +AD S+ SL + H ++G + HE DDL K GNE
Sbjct: 76 KDEERRVGDLGNVTADKDGVADVSIEDSVISLSGD-HXIIGRTLVVHEKADDLGKGGNE 133
>pdb|3HFF|A Chain A, Monomeric Human Cu,Zn Superoxide Dismutase Without Zn
Ligands
Length = 153
Score = 31.6 bits (70), Expect = 3.8, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 1054 EDNSQGV------FSSVSLPSTLYKPYEKKEGDDSLASERQTWLADESVLTHFESLKLET 1107
EDN+ G F+ +S S K E+ G + + +AD S+ SL +
Sbjct: 51 EDNTAGCTSAGPSFNPLSRKSGGPKDEERSVGSLGNVTADKDGVADVSIEDSVISLSGD- 109
Query: 1108 HEVVGSEIARHEALDDLEKDGNE 1130
H ++G + HE DDL K GNE
Sbjct: 110 HAIIGRTLVVHEKADDLGKGGNE 132
>pdb|3LTV|A Chain A, Mouse-Human Sod1 Chimera
pdb|3LTV|B Chain B, Mouse-Human Sod1 Chimera
pdb|3LTV|C Chain C, Mouse-Human Sod1 Chimera
pdb|3LTV|D Chain D, Mouse-Human Sod1 Chimera
pdb|3LTV|E Chain E, Mouse-Human Sod1 Chimera
pdb|3LTV|F Chain F, Mouse-Human Sod1 Chimera
Length = 153
Score = 31.2 bits (69), Expect = 4.6, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 15/86 (17%)
Query: 1055 DNSQGVFSSVSLPSTLYKPYEKKEG----------DDSLASERQTWLADESVLTHFESLK 1104
DN+QG S+ + P+ KK G D + + +AD S+ SL
Sbjct: 52 DNTQGCTSA----GPHFNPHSKKHGGPADEERHVGDLGNVTADKDGVADVSIEDSVISLS 107
Query: 1105 LETHEVVGSEIARHEALDDLEKDGNE 1130
+ H ++G + HE DDL K GNE
Sbjct: 108 GD-HCIIGRTLVVHEKADDLGKGGNE 132
>pdb|1N18|A Chain A, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|B Chain B, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|C Chain C, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|D Chain D, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|E Chain E, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|F Chain F, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|G Chain G, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|H Chain H, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|I Chain I, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|J Chain J, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
Length = 154
Score = 31.2 bits (69), Expect = 5.7, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 1072 KPYEKKEGDDSLASERQTWLADESVLTHFESLKLETHEVVGSEIARHEALDDLEKDGNE 1130
K E+ GD + + +AD S+ SL + H ++G + HE DDL K GNE
Sbjct: 76 KDEERHVGDLGNVTADKDGVADVSIEDSVISLSGD-HSIIGRTLVVHEKADDLGKGGNE 133
>pdb|1N19|A Chain A, Structure Of The Hsod A4v Mutant
pdb|1N19|B Chain B, Structure Of The Hsod A4v Mutant
Length = 154
Score = 31.2 bits (69), Expect = 5.8, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 1072 KPYEKKEGDDSLASERQTWLADESVLTHFESLKLETHEVVGSEIARHEALDDLEKDGNE 1130
K E+ GD + + +AD S+ SL + H ++G + HE DDL K GNE
Sbjct: 76 KDEERHVGDLGNVTADKDGVADVSIEDSVISLSGD-HSIIGRTLVVHEKADDLGKGGNE 133
>pdb|3GQF|A Chain A, Structural And Biophysical Properties Of The Pathogenic Sod1
Variant H46rH48Q
pdb|3GQF|B Chain B, Structural And Biophysical Properties Of The Pathogenic Sod1
Variant H46rH48Q
pdb|3GQF|C Chain C, Structural And Biophysical Properties Of The Pathogenic Sod1
Variant H46rH48Q
pdb|3GQF|D Chain D, Structural And Biophysical Properties Of The Pathogenic Sod1
Variant H46rH48Q
pdb|3GQF|E Chain E, Structural And Biophysical Properties Of The Pathogenic Sod1
Variant H46rH48Q
pdb|3GQF|F Chain F, Structural And Biophysical Properties Of The Pathogenic Sod1
Variant H46rH48Q
pdb|3K91|A Chain A, Polysulfane Bridge In Cu-Zn Superoxide Dismutase
pdb|3K91|B Chain B, Polysulfane Bridge In Cu-Zn Superoxide Dismutase
Length = 153
Score = 30.8 bits (68), Expect = 5.8, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 1049 RLSRMEDNSQGV------FSSVSLPSTLYKPYEKKEGDDSLASERQTWLADESVLTHFES 1102
R+ DN+ G F+ +S K E+ GD + + +AD S+ S
Sbjct: 46 RVQEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVIS 105
Query: 1103 LKLETHEVVGSEIARHEALDDLEKDGNE 1130
L + H ++G + HE DDL K GNE
Sbjct: 106 LSGD-HCIIGRTLVVHEKADDLGKGGNE 132
>pdb|2NNX|A Chain A, Crystal Structure Of The H46r, H48q Double Mutant Of Human
[cu-Zn] Superoxide Dismutase
pdb|2NNX|B Chain B, Crystal Structure Of The H46r, H48q Double Mutant Of Human
[cu-Zn] Superoxide Dismutase
pdb|2NNX|C Chain C, Crystal Structure Of The H46r, H48q Double Mutant Of Human
[cu-Zn] Superoxide Dismutase
pdb|2NNX|D Chain D, Crystal Structure Of The H46r, H48q Double Mutant Of Human
[cu-Zn] Superoxide Dismutase
Length = 154
Score = 30.8 bits (68), Expect = 5.8, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 1049 RLSRMEDNSQGV------FSSVSLPSTLYKPYEKKEGDDSLASERQTWLADESVLTHFES 1102
R+ DN+ G F+ +S K E+ GD + + +AD S+ S
Sbjct: 47 RVQEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVIS 106
Query: 1103 LKLETHEVVGSEIARHEALDDLEKDGNE 1130
L + H ++G + HE DDL K GNE
Sbjct: 107 LSGD-HCIIGRTLVVHEKADDLGKGGNE 133
>pdb|1SOS|A Chain A, Atomic Structures Of Wild-type And Thermostable Mutant
Recombinant Human Cu, Zn Superoxide Dismutase
pdb|1SOS|F Chain F, Atomic Structures Of Wild-type And Thermostable Mutant
Recombinant Human Cu, Zn Superoxide Dismutase
pdb|1SOS|B Chain B, Atomic Structures Of Wild-type And Thermostable Mutant
Recombinant Human Cu, Zn Superoxide Dismutase
pdb|1SOS|G Chain G, Atomic Structures Of Wild-type And Thermostable Mutant
Recombinant Human Cu, Zn Superoxide Dismutase
pdb|1SOS|C Chain C, Atomic Structures Of Wild-type And Thermostable Mutant
Recombinant Human Cu, Zn Superoxide Dismutase
pdb|1SOS|H Chain H, Atomic Structures Of Wild-type And Thermostable Mutant
Recombinant Human Cu, Zn Superoxide Dismutase
pdb|1SOS|D Chain D, Atomic Structures Of Wild-type And Thermostable Mutant
Recombinant Human Cu, Zn Superoxide Dismutase
pdb|1SOS|I Chain I, Atomic Structures Of Wild-type And Thermostable Mutant
Recombinant Human Cu, Zn Superoxide Dismutase
pdb|1SOS|E Chain E, Atomic Structures Of Wild-type And Thermostable Mutant
Recombinant Human Cu, Zn Superoxide Dismutase
pdb|1SOS|J Chain J, Atomic Structures Of Wild-type And Thermostable Mutant
Recombinant Human Cu, Zn Superoxide Dismutase
Length = 154
Score = 30.8 bits (68), Expect = 6.0, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 1072 KPYEKKEGDDSLASERQTWLADESVLTHFESLKLETHEVVGSEIARHEALDDLEKDGNE 1130
K E+ GD + + +AD S+ SL + H ++G + HE DDL K GNE
Sbjct: 76 KDEERHVGDLGNVTADKDGVADVSIEDSVISLSGD-HSIIGRTLVVHEKADDLGKGGNE 133
>pdb|1L3N|A Chain A, The Solution Structure Of Reduced Dimeric Copper Zinc Sod:
The Structural Effects Of Dimerization
pdb|1L3N|B Chain B, The Solution Structure Of Reduced Dimeric Copper Zinc Sod:
The Structural Effects Of Dimerization
pdb|2AF2|A Chain A, Solution Structure Of Disulfide Reduced And Copper Depleted
Human Superoxide Dismutase
pdb|2AF2|B Chain B, Solution Structure Of Disulfide Reduced And Copper Depleted
Human Superoxide Dismutase
pdb|2LU5|A Chain A, Structure And Chemical Shifts Of Cu(I),Zn(Ii) Superoxide
Dismutase By Solid-State Nmr
Length = 153
Score = 30.8 bits (68), Expect = 6.0, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 1072 KPYEKKEGDDSLASERQTWLADESVLTHFESLKLETHEVVGSEIARHEALDDLEKDGNE 1130
K E+ GD + + +AD S+ SL + H ++G + HE DDL K GNE
Sbjct: 75 KDEERHVGDLGNVTADKDGVADVSIEDSVISLSGD-HSIIGRTLVVHEKADDLGKGGNE 132
>pdb|1FUN|A Chain A, Superoxide Dismutase Mutant With Lys 136 Replaced By Glu,
Cys 6 Replaced By Ala And Cys 111 Replaced By Ser (K136e,
C6a, C111s)
pdb|1FUN|F Chain F, Superoxide Dismutase Mutant With Lys 136 Replaced By Glu,
Cys 6 Replaced By Ala And Cys 111 Replaced By Ser (K136e,
C6a, C111s)
pdb|1FUN|B Chain B, Superoxide Dismutase Mutant With Lys 136 Replaced By Glu,
Cys 6 Replaced By Ala And Cys 111 Replaced By Ser (K136e,
C6a, C111s)
pdb|1FUN|G Chain G, Superoxide Dismutase Mutant With Lys 136 Replaced By Glu,
Cys 6 Replaced By Ala And Cys 111 Replaced By Ser (K136e,
C6a, C111s)
pdb|1FUN|C Chain C, Superoxide Dismutase Mutant With Lys 136 Replaced By Glu,
Cys 6 Replaced By Ala And Cys 111 Replaced By Ser (K136e,
C6a, C111s)
pdb|1FUN|H Chain H, Superoxide Dismutase Mutant With Lys 136 Replaced By Glu,
Cys 6 Replaced By Ala And Cys 111 Replaced By Ser (K136e,
C6a, C111s)
pdb|1FUN|D Chain D, Superoxide Dismutase Mutant With Lys 136 Replaced By Glu,
Cys 6 Replaced By Ala And Cys 111 Replaced By Ser (K136e,
C6a, C111s)
pdb|1FUN|I Chain I, Superoxide Dismutase Mutant With Lys 136 Replaced By Glu,
Cys 6 Replaced By Ala And Cys 111 Replaced By Ser (K136e,
C6a, C111s)
pdb|1FUN|E Chain E, Superoxide Dismutase Mutant With Lys 136 Replaced By Glu,
Cys 6 Replaced By Ala And Cys 111 Replaced By Ser (K136e,
C6a, C111s)
pdb|1FUN|J Chain J, Superoxide Dismutase Mutant With Lys 136 Replaced By Glu,
Cys 6 Replaced By Ala And Cys 111 Replaced By Ser (K136e,
C6a, C111s)
Length = 153
Score = 30.8 bits (68), Expect = 6.0, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 1072 KPYEKKEGDDSLASERQTWLADESVLTHFESLKLETHEVVGSEIARHEALDDLEKDGNE 1130
K E+ GD + + +AD S+ SL + H ++G + HE DDL K GNE
Sbjct: 75 KDEERHVGDLGNVTADKDGVADVSIEDSVISLSGD-HSIIGRTLVVHEKADDLGKGGNE 132
>pdb|1PTZ|A Chain A, Crystal Structure Of The Human Cu, Zn Superoxide Dismutase,
Familial Amyotrophic Lateral Sclerosis (Fals) Mutant H43r
pdb|1PTZ|B Chain B, Crystal Structure Of The Human Cu, Zn Superoxide Dismutase,
Familial Amyotrophic Lateral Sclerosis (Fals) Mutant H43r
Length = 153
Score = 30.8 bits (68), Expect = 6.1, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 1072 KPYEKKEGDDSLASERQTWLADESVLTHFESLKLETHEVVGSEIARHEALDDLEKDGNE 1130
K E+ GD + + +AD S+ SL + H ++G + HE DDL K GNE
Sbjct: 75 KDEERHVGDLGNVTADKDGVADVSIEDSVISLSGD-HSIIGRTLVVHEKADDLGKGGNE 132
>pdb|1OZU|A Chain A, Crystal Structure Of Familial Als Mutant S134n Of Human Cu,
Zn Superoxide Dismutase (Cuznsod) To 1.3a Resolution
pdb|1OZU|B Chain B, Crystal Structure Of Familial Als Mutant S134n Of Human Cu,
Zn Superoxide Dismutase (Cuznsod) To 1.3a Resolution
Length = 153
Score = 30.8 bits (68), Expect = 6.6, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 1072 KPYEKKEGDDSLASERQTWLADESVLTHFESLKLETHEVVGSEIARHEALDDLEKDGNE 1130
K E+ GD + + +AD S+ SL + H ++G + HE DDL K GNE
Sbjct: 75 KDEERHVGDLGNVTADKDGVADVSIEDSVISLSGD-HXIIGRTLVVHEKADDLGKGGNE 132
>pdb|2C9S|A Chain A, 1.24 Angstroms Resolution Structure Of Zn-Zn Human
Superoxide Dismutase
pdb|2C9S|F Chain F, 1.24 Angstroms Resolution Structure Of Zn-Zn Human
Superoxide Dismutase
pdb|3T5W|A Chain A, 2me Modified Human Sod1
pdb|3T5W|B Chain B, 2me Modified Human Sod1
pdb|3T5W|D Chain D, 2me Modified Human Sod1
pdb|3T5W|E Chain E, 2me Modified Human Sod1
pdb|3T5W|F Chain F, 2me Modified Human Sod1
pdb|3T5W|G Chain G, 2me Modified Human Sod1
pdb|3T5W|H Chain H, 2me Modified Human Sod1
pdb|3T5W|I Chain I, 2me Modified Human Sod1
pdb|3T5W|J Chain J, 2me Modified Human Sod1
pdb|3T5W|K Chain K, 2me Modified Human Sod1
pdb|3T5W|L Chain L, 2me Modified Human Sod1
pdb|3T5W|M Chain M, 2me Modified Human Sod1
Length = 153
Score = 30.8 bits (68), Expect = 6.7, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 1072 KPYEKKEGDDSLASERQTWLADESVLTHFESLKLETHEVVGSEIARHEALDDLEKDGNE 1130
K E+ GD + + +AD S+ SL + H ++G + HE DDL K GNE
Sbjct: 75 KDEERHVGDLGNVTADKDGVADVSIEDSVISLSGD-HXIIGRTLVVHEKADDLGKGGNE 132
>pdb|2WKO|F Chain F, Structure Of Metal Loaded Pathogenic Sod1 Mutant G93a
Length = 154
Score = 30.8 bits (68), Expect = 6.8, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 1072 KPYEKKEGDDSLASERQTWLADESVLTHFESLKLETHEVVGSEIARHEALDDLEKDGNE 1130
K E+ GD + + +AD S+ SL + H ++G + HE DDL K GNE
Sbjct: 76 KDEERHVGDLGNVTADKDAVADVSIEDSVISLSGD-HXIIGRTLVVHEKADDLGKGGNE 133
>pdb|2WYZ|A Chain A, L38v Sod1 Mutant Complexed With Ump
pdb|2WYZ|F Chain F, L38v Sod1 Mutant Complexed With Ump
Length = 153
Score = 30.8 bits (68), Expect = 6.9, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 1072 KPYEKKEGDDSLASERQTWLADESVLTHFESLKLETHEVVGSEIARHEALDDLEKDGNE 1130
K E+ GD + + +AD S+ SL + H ++G + HE DDL K GNE
Sbjct: 75 KDEERHVGDLGNVTADKDGVADVSIEDSVISLSGD-HXIIGRTLVVHEKADDLGKGGNE 132
>pdb|3H2Q|A Chain A, Human Sod1 H80r Variant, P21 Crystal Form
pdb|3H2Q|B Chain B, Human Sod1 H80r Variant, P21 Crystal Form
pdb|3H2Q|C Chain C, Human Sod1 H80r Variant, P21 Crystal Form
pdb|3H2Q|D Chain D, Human Sod1 H80r Variant, P21 Crystal Form
Length = 153
Score = 30.8 bits (68), Expect = 6.9, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 1072 KPYEKKEGDDSLASERQTWLADESVLTHFESLKLETHEVVGSEIARHEALDDLEKDGNE 1130
K E++ GD + + +AD S+ SL + H ++G + HE DDL K GNE
Sbjct: 75 KDEERRVGDLGNVTADKDGVADVSIEDSVISLSGD-HCIIGRTLVVHEKADDLGKGGNE 132
>pdb|2GBT|A Chain A, C6aC111A CUZN SUPEROXIDE DISMUTASE
pdb|2GBT|B Chain B, C6aC111A CUZN SUPEROXIDE DISMUTASE
pdb|2GBT|C Chain C, C6aC111A CUZN SUPEROXIDE DISMUTASE
pdb|2GBT|D Chain D, C6aC111A CUZN SUPEROXIDE DISMUTASE
Length = 153
Score = 30.8 bits (68), Expect = 7.0, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 1072 KPYEKKEGDDSLASERQTWLADESVLTHFESLKLETHEVVGSEIARHEALDDLEKDGNE 1130
K E+ GD + + +AD S+ SL + H ++G + HE DDL K GNE
Sbjct: 75 KDEERHVGDLGNVTADKDGVADVSIEDSVISLSGD-HAIIGRTLVVHEKADDLGKGGNE 132
>pdb|2GBU|A Chain A, C6a/c111a/c57a/c146a Apo Cuzn Superoxide Dismutase
pdb|2GBU|B Chain B, C6a/c111a/c57a/c146a Apo Cuzn Superoxide Dismutase
pdb|2GBU|C Chain C, C6a/c111a/c57a/c146a Apo Cuzn Superoxide Dismutase
pdb|2GBU|D Chain D, C6a/c111a/c57a/c146a Apo Cuzn Superoxide Dismutase
pdb|2GBV|A Chain A, C6aC111AC57AC146A HOLO CUZN SUPEROXIDE DISMUTASE
pdb|2GBV|B Chain B, C6aC111AC57AC146A HOLO CUZN SUPEROXIDE DISMUTASE
pdb|2GBV|C Chain C, C6aC111AC57AC146A HOLO CUZN SUPEROXIDE DISMUTASE
pdb|2GBV|D Chain D, C6aC111AC57AC146A HOLO CUZN SUPEROXIDE DISMUTASE
pdb|2GBV|E Chain E, C6aC111AC57AC146A HOLO CUZN SUPEROXIDE DISMUTASE
pdb|2GBV|F Chain F, C6aC111AC57AC146A HOLO CUZN SUPEROXIDE DISMUTASE
pdb|2GBV|G Chain G, C6aC111AC57AC146A HOLO CUZN SUPEROXIDE DISMUTASE
pdb|2GBV|H Chain H, C6aC111AC57AC146A HOLO CUZN SUPEROXIDE DISMUTASE
pdb|2GBV|I Chain I, C6aC111AC57AC146A HOLO CUZN SUPEROXIDE DISMUTASE
pdb|2GBV|J Chain J, C6aC111AC57AC146A HOLO CUZN SUPEROXIDE DISMUTASE
Length = 153
Score = 30.8 bits (68), Expect = 7.5, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 1072 KPYEKKEGDDSLASERQTWLADESVLTHFESLKLETHEVVGSEIARHEALDDLEKDGNE 1130
K E+ GD + + +AD S+ SL + H ++G + HE DDL K GNE
Sbjct: 75 KDEERHVGDLGNVTADKDGVADVSIEDSVISLSGD-HAIIGRTLVVHEKADDLGKGGNE 132
>pdb|1OEZ|W Chain W, Zn His46arg Mutant Of Human Cu, Zn Superoxide Dismutase
pdb|1OEZ|X Chain X, Zn His46arg Mutant Of Human Cu, Zn Superoxide Dismutase
pdb|1OEZ|Y Chain Y, Zn His46arg Mutant Of Human Cu, Zn Superoxide Dismutase
pdb|1OEZ|Z Chain Z, Zn His46arg Mutant Of Human Cu, Zn Superoxide Dismutase
pdb|1OZT|M Chain M, Crystal Structure Of Apo-H46r Familial Als Mutant Human Cu,
Zn Superoxide Dismutase (Cuznsod) To 2.5a Resolution
pdb|1OZT|N Chain N, Crystal Structure Of Apo-H46r Familial Als Mutant Human Cu,
Zn Superoxide Dismutase (Cuznsod) To 2.5a Resolution
pdb|1OZT|G Chain G, Crystal Structure Of Apo-H46r Familial Als Mutant Human Cu,
Zn Superoxide Dismutase (Cuznsod) To 2.5a Resolution
pdb|1OZT|H Chain H, Crystal Structure Of Apo-H46r Familial Als Mutant Human Cu,
Zn Superoxide Dismutase (Cuznsod) To 2.5a Resolution
pdb|1OZT|K Chain K, Crystal Structure Of Apo-H46r Familial Als Mutant Human Cu,
Zn Superoxide Dismutase (Cuznsod) To 2.5a Resolution
pdb|1OZT|L Chain L, Crystal Structure Of Apo-H46r Familial Als Mutant Human Cu,
Zn Superoxide Dismutase (Cuznsod) To 2.5a Resolution
pdb|1OZT|I Chain I, Crystal Structure Of Apo-H46r Familial Als Mutant Human Cu,
Zn Superoxide Dismutase (Cuznsod) To 2.5a Resolution
pdb|1OZT|J Chain J, Crystal Structure Of Apo-H46r Familial Als Mutant Human Cu,
Zn Superoxide Dismutase (Cuznsod) To 2.5a Resolution
Length = 153
Score = 30.8 bits (68), Expect = 7.5, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 1049 RLSRMEDNSQGV------FSSVSLPSTLYKPYEKKEGDDSLASERQTWLADESVLTHFES 1102
R+ DN+ G F+ +S K E+ GD + + +AD S+ S
Sbjct: 46 RVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVIS 105
Query: 1103 LKLETHEVVGSEIARHEALDDLEKDGNE 1130
L + H ++G + HE DDL K GNE
Sbjct: 106 LSGD-HCIIGRTLVVHEKADDLGKGGNE 132
>pdb|3E7N|A Chain A, Crystal Structure Of D-Ribose High-Affinity Transport System
From Salmonella Typhimurium Lt2
pdb|3E7N|B Chain B, Crystal Structure Of D-Ribose High-Affinity Transport System
From Salmonella Typhimurium Lt2
pdb|3E7N|C Chain C, Crystal Structure Of D-Ribose High-Affinity Transport System
From Salmonella Typhimurium Lt2
pdb|3E7N|D Chain D, Crystal Structure Of D-Ribose High-Affinity Transport System
From Salmonella Typhimurium Lt2
pdb|3E7N|E Chain E, Crystal Structure Of D-Ribose High-Affinity Transport System
From Salmonella Typhimurium Lt2
pdb|3E7N|F Chain F, Crystal Structure Of D-Ribose High-Affinity Transport System
From Salmonella Typhimurium Lt2
pdb|3E7N|G Chain G, Crystal Structure Of D-Ribose High-Affinity Transport System
From Salmonella Typhimurium Lt2
pdb|3E7N|H Chain H, Crystal Structure Of D-Ribose High-Affinity Transport System
From Salmonella Typhimurium Lt2
pdb|3E7N|I Chain I, Crystal Structure Of D-Ribose High-Affinity Transport System
From Salmonella Typhimurium Lt2
pdb|3E7N|J Chain J, Crystal Structure Of D-Ribose High-Affinity Transport System
From Salmonella Typhimurium Lt2
pdb|3E7N|K Chain K, Crystal Structure Of D-Ribose High-Affinity Transport System
From Salmonella Typhimurium Lt2
pdb|3E7N|L Chain L, Crystal Structure Of D-Ribose High-Affinity Transport System
From Salmonella Typhimurium Lt2
pdb|3E7N|M Chain M, Crystal Structure Of D-Ribose High-Affinity Transport System
From Salmonella Typhimurium Lt2
pdb|3E7N|N Chain N, Crystal Structure Of D-Ribose High-Affinity Transport System
From Salmonella Typhimurium Lt2
pdb|3E7N|O Chain O, Crystal Structure Of D-Ribose High-Affinity Transport System
From Salmonella Typhimurium Lt2
Length = 142
Score = 30.4 bits (67), Expect = 7.7, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
Query: 1039 ICDLGLSITKRLSRMEDN-SQGVFSSVSLPSTLYKPYEKKEGDDSLASERQTWLADESVL 1097
+CD GL I +R++ +QGV S + + + + + + ++Q E++L
Sbjct: 29 VCDAGLPIPNSTARIDXALTQGVPSFXQVVDVVTREXQVEAAILATEIKQQNPQLHETLL 88
Query: 1098 THFESLKLETHEVVGSEIARHEALDDLEKDGNEV 1131
TH E L+ + HE L D V
Sbjct: 89 THLEQLQQHQGNTIKISYTTHEQFKKLTADSQAV 122
>pdb|2VR8|A Chain A, Crystal Structure Of G85r Als Mutant Of Human Cu,Zn
Superoxide Dismutase (Cuznsod) At 1.36 A Resolution
pdb|2VR8|F Chain F, Crystal Structure Of G85r Als Mutant Of Human Cu,Zn
Superoxide Dismutase (Cuznsod) At 1.36 A Resolution
Length = 154
Score = 30.4 bits (67), Expect = 8.0, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 1072 KPYEKKEGDDSLASERQTWLADESVLTHFESLKLETHEVVGSEIARHEALDDLEKDGNE 1130
K E+ GD + + +AD S+ SL + H ++G + HE DDL K GNE
Sbjct: 76 KDEERHVGDLRNVTADKDGVADVSIEDSVISLSGD-HXIIGRTLVVHEKADDLGKGGNE 133
>pdb|3CQQ|A Chain A, Human Sod1 G85r Variant, Structure Ii
pdb|3CQQ|B Chain B, Human Sod1 G85r Variant, Structure Ii
Length = 153
Score = 30.4 bits (67), Expect = 8.0, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 1072 KPYEKKEGDDSLASERQTWLADESVLTHFESLKLETHEVVGSEIARHEALDDLEKDGNE 1130
K E+ GD + + +AD S+ SL + H ++G + HE DDL K GNE
Sbjct: 75 KDEERHVGDLRNVTADKDGVADVSIEDSVISLSGD-HXIIGRTLVVHEKADDLGKGGNE 132
>pdb|3GTV|A Chain A, Human-Mouse Sod1 Chimera
pdb|3GTV|B Chain B, Human-Mouse Sod1 Chimera
pdb|3GTV|C Chain C, Human-Mouse Sod1 Chimera
pdb|3GTV|D Chain D, Human-Mouse Sod1 Chimera
pdb|3GTV|E Chain E, Human-Mouse Sod1 Chimera
pdb|3GTV|F Chain F, Human-Mouse Sod1 Chimera
pdb|3GTV|G Chain G, Human-Mouse Sod1 Chimera
pdb|3GTV|H Chain H, Human-Mouse Sod1 Chimera
pdb|3GTV|I Chain I, Human-Mouse Sod1 Chimera
pdb|3GTV|J Chain J, Human-Mouse Sod1 Chimera
pdb|3GTV|K Chain K, Human-Mouse Sod1 Chimera
pdb|3GTV|L Chain L, Human-Mouse Sod1 Chimera
Length = 153
Score = 30.4 bits (67), Expect = 9.7, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 1072 KPYEKKEGDDSLASERQTWLADESVLTHFESLKLETHEVVGSEIARHEALDDLEKDGNE 1130
K E+ GD + + +A+ S+ SL E H ++G + HE DDL K GNE
Sbjct: 75 KDEERHVGDLGNVTAGKDGVANVSIEDRVISLSGE-HSIIGRTMVVHEKQDDLGKGGNE 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,231,729
Number of Sequences: 62578
Number of extensions: 1703477
Number of successful extensions: 4081
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 4061
Number of HSP's gapped (non-prelim): 62
length of query: 1670
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1558
effective length of database: 7,964,601
effective search space: 12408848358
effective search space used: 12408848358
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)