Query 000321
Match_columns 1670
No_of_seqs 277 out of 462
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 04:15:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000321.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000321hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1525 Sister chromatid cohes 100.0 8E-135 2E-139 1310.6 81.2 1061 9-1096 13-1119(1266)
2 KOG1525 Sister chromatid cohes 99.7 5.6E-14 1.2E-18 186.1 48.5 484 632-1244 583-1087(1266)
3 PF09465 LBR_tudor: Lamin-B re 98.9 1.4E-09 3.1E-14 95.1 6.4 43 1371-1413 7-49 (55)
4 PTZ00429 beta-adaptin; Provisi 98.7 0.0001 2.2E-09 96.8 39.9 392 261-747 39-437 (746)
5 KOG2171 Karyopherin (importin) 98.6 0.00039 8.6E-09 91.7 42.2 551 214-847 4-595 (1075)
6 KOG1824 TATA-binding protein-i 98.2 0.056 1.2E-06 70.6 47.9 365 40-426 41-484 (1233)
7 KOG1020 Sister chromatid cohes 98.2 0.023 4.9E-07 77.1 43.3 135 289-435 810-945 (1692)
8 PTZ00429 beta-adaptin; Provisi 98.1 0.0058 1.2E-07 80.8 37.6 337 238-664 89-431 (746)
9 PF01602 Adaptin_N: Adaptin N 98.0 0.0016 3.4E-08 82.8 28.2 117 237-361 62-179 (526)
10 KOG1020 Sister chromatid cohes 97.8 0.23 5E-06 68.0 41.5 164 238-405 797-964 (1692)
11 PF01602 Adaptin_N: Adaptin N 97.5 0.094 2E-06 66.8 31.7 239 236-525 133-374 (526)
12 PRK09687 putative lyase; Provi 97.4 0.00093 2E-08 79.0 12.1 145 238-399 41-186 (280)
13 PRK09687 putative lyase; Provi 97.4 0.0015 3.2E-08 77.4 12.8 129 254-399 90-219 (280)
14 KOG1060 Vesicle coat complex A 97.3 0.17 3.6E-06 65.5 29.2 390 263-726 44-439 (968)
15 KOG1062 Vesicle coat complex A 97.2 0.43 9.2E-06 62.2 32.8 351 253-705 106-468 (866)
16 PRK13800 putative oxidoreducta 97.1 0.047 1E-06 74.6 24.6 119 256-397 777-895 (897)
17 KOG2025 Chromosome condensatio 97.0 2.3 4.9E-05 55.1 35.3 125 262-398 93-219 (892)
18 smart00333 TUDOR Tudor domain. 97.0 0.0015 3.2E-08 58.4 5.8 44 1371-1416 4-48 (57)
19 PF12717 Cnd1: non-SMC mitotic 96.9 0.056 1.2E-06 59.8 18.6 94 308-403 1-94 (178)
20 cd04508 TUDOR Tudor domains ar 96.8 0.0028 6E-08 54.7 5.6 43 1373-1416 1-44 (48)
21 smart00743 Agenet Tudor-like d 96.7 0.0026 5.6E-08 57.9 5.4 36 1371-1407 4-39 (61)
22 KOG0414 Chromosome condensatio 96.7 4.9 0.00011 54.9 59.4 440 237-724 295-797 (1251)
23 PLN03200 cellulose synthase-in 96.6 2.4 5.3E-05 61.6 35.4 371 307-744 416-812 (2102)
24 PF13646 HEAT_2: HEAT repeats; 96.6 0.012 2.5E-07 56.6 9.5 83 300-397 4-88 (88)
25 KOG1824 TATA-binding protein-i 96.6 2.1 4.4E-05 57.0 31.3 475 196-692 454-980 (1233)
26 KOG0212 Uncharacterized conser 96.6 3.7 8E-05 52.2 38.1 418 199-648 26-494 (675)
27 KOG1949 Uncharacterized conser 96.6 0.38 8.3E-06 61.5 24.1 100 258-361 224-329 (1005)
28 PRK13800 putative oxidoreducta 96.5 0.014 3.1E-07 79.5 12.4 120 255-399 622-741 (897)
29 KOG1060 Vesicle coat complex A 96.5 3.7 7.9E-05 53.9 31.9 160 237-405 91-250 (968)
30 PF10508 Proteasom_PSMB: Prote 96.5 0.67 1.4E-05 59.6 26.4 241 157-402 91-367 (503)
31 PF10508 Proteasom_PSMB: Prote 96.2 2.3 5E-05 54.8 29.2 131 255-386 120-257 (503)
32 KOG2023 Nuclear transport rece 96.2 0.55 1.2E-05 60.0 22.3 369 237-643 378-789 (885)
33 KOG1242 Protein containing ada 96.0 1.6 3.4E-05 56.0 25.2 231 294-574 215-449 (569)
34 PF12348 CLASP_N: CLASP N term 95.8 0.09 1.9E-06 59.8 12.6 146 256-404 55-209 (228)
35 KOG4675 Uncharacterized conser 95.7 0.0095 2.1E-07 68.7 4.2 67 1362-1428 151-225 (273)
36 KOG1248 Uncharacterized conser 95.7 14 0.00031 50.7 47.0 167 113-283 282-456 (1176)
37 PF14500 MMS19_N: Dos2-interac 95.7 0.77 1.7E-05 54.2 19.9 231 55-300 6-255 (262)
38 KOG1949 Uncharacterized conser 95.5 9.8 0.00021 49.5 29.2 198 237-454 167-377 (1005)
39 KOG0213 Splicing factor 3b, su 95.4 3.1 6.7E-05 54.0 24.4 218 56-322 561-826 (1172)
40 PF13646 HEAT_2: HEAT repeats; 95.3 0.06 1.3E-06 51.6 7.6 86 256-359 1-88 (88)
41 COG5218 YCG1 Chromosome conden 95.3 1.6 3.5E-05 55.2 21.1 254 262-549 99-370 (885)
42 KOG2171 Karyopherin (importin) 95.1 21 0.00046 49.1 70.7 312 55-403 87-420 (1075)
43 KOG1061 Vesicle coat complex A 94.8 5.4 0.00012 52.5 24.7 374 254-667 13-416 (734)
44 PF12348 CLASP_N: CLASP N term 94.6 0.82 1.8E-05 52.0 15.8 102 257-363 97-206 (228)
45 KOG2023 Nuclear transport rece 94.5 0.49 1.1E-05 60.4 14.2 182 159-374 105-293 (885)
46 PF09038 53-BP1_Tudor: Tumour 94.4 0.069 1.5E-06 55.0 5.6 46 1368-1414 1-46 (122)
47 KOG2011 Sister chromatid cohes 94.4 0.53 1.2E-05 63.6 15.1 125 299-434 291-421 (1048)
48 COG5096 Vesicle coat complex, 94.2 6.9 0.00015 52.2 24.2 129 263-402 28-157 (757)
49 PF12719 Cnd3: Nuclear condens 94.1 0.56 1.2E-05 56.1 13.4 97 263-363 36-143 (298)
50 COG5098 Chromosome condensatio 94.0 4.2 9.1E-05 52.5 20.8 134 237-403 282-417 (1128)
51 PF12460 MMS19_C: RNAPII trans 93.8 23 0.0005 44.6 27.4 305 63-380 58-410 (415)
52 cd00020 ARM Armadillo/beta-cat 93.8 0.088 1.9E-06 52.6 5.0 106 255-360 8-117 (120)
53 PLN03200 cellulose synthase-in 93.7 46 0.00099 49.5 32.3 142 256-401 406-559 (2102)
54 KOG0414 Chromosome condensatio 93.5 1.3 2.7E-05 60.2 15.9 151 236-392 896-1055(1251)
55 COG5240 SEC21 Vesicle coat com 93.3 7.1 0.00015 49.7 20.8 303 71-398 44-366 (898)
56 PF12755 Vac14_Fab1_bd: Vacuol 93.3 0.21 4.6E-06 50.2 6.8 66 333-399 26-94 (97)
57 PF12717 Cnd1: non-SMC mitotic 93.2 0.82 1.8E-05 50.7 11.9 84 239-325 10-93 (178)
58 COG5096 Vesicle coat complex, 92.5 12 0.00027 50.0 22.7 103 296-402 93-196 (757)
59 COG5098 Chromosome condensatio 91.7 3.6 7.8E-05 53.1 15.6 110 243-353 335-464 (1128)
60 PF02985 HEAT: HEAT repeat; I 91.6 0.25 5.5E-06 39.1 3.9 29 335-363 1-29 (31)
61 PF12719 Cnd3: Nuclear condens 91.5 9.5 0.00021 45.8 18.8 125 276-402 5-144 (298)
62 KOG1062 Vesicle coat complex A 91.1 8.8 0.00019 50.8 18.6 235 55-363 149-414 (866)
63 KOG0915 Uncharacterized conser 90.9 18 0.00039 50.9 22.0 360 14-385 988-1457(1702)
64 KOG1078 Vesicle coat complex C 90.7 8.5 0.00019 50.7 18.0 258 55-357 252-526 (865)
65 PF13513 HEAT_EZ: HEAT-like re 90.5 0.17 3.7E-06 44.9 2.2 52 309-360 1-54 (55)
66 PF10363 DUF2435: Protein of u 90.4 2 4.3E-05 43.0 9.7 87 294-384 2-89 (92)
67 PF06003 SMN: Survival motor n 90.1 0.5 1.1E-05 55.8 6.2 49 1369-1417 68-117 (264)
68 KOG2259 Uncharacterized conser 90.0 0.44 9.6E-06 60.8 5.8 97 298-398 376-472 (823)
69 PF01347 Vitellogenin_N: Lipop 90.0 4.1 9E-05 53.5 15.2 128 248-396 480-617 (618)
70 cd00020 ARM Armadillo/beta-cat 89.7 0.6 1.3E-05 46.6 5.6 100 300-399 12-118 (120)
71 PF13001 Ecm29: Proteasome sta 89.6 13 0.00029 48.0 18.8 214 133-376 267-499 (501)
72 KOG2956 CLIP-associating prote 88.7 3.7 8.1E-05 51.3 12.2 173 243-427 321-498 (516)
73 PF05804 KAP: Kinesin-associat 88.5 17 0.00037 48.7 19.0 177 636-823 289-478 (708)
74 KOG2259 Uncharacterized conser 88.3 2.8 6.1E-05 54.0 11.0 111 289-402 192-311 (823)
75 PF13513 HEAT_EZ: HEAT-like re 88.0 0.45 9.8E-06 42.2 3.0 52 348-399 1-55 (55)
76 PF12755 Vac14_Fab1_bd: Vacuol 87.6 1.2 2.6E-05 44.9 6.1 84 271-354 3-88 (97)
77 TIGR02270 conserved hypothetic 87.5 3.7 8E-05 51.6 11.5 78 305-398 127-204 (410)
78 PF12765 Cohesin_HEAT: HEAT re 87.0 0.79 1.7E-05 39.2 3.7 39 319-357 3-41 (42)
79 COG5240 SEC21 Vesicle coat com 86.7 1.1E+02 0.0024 39.7 30.2 51 616-666 319-369 (898)
80 KOG2011 Sister chromatid cohes 86.7 9.9 0.00022 52.1 15.3 164 196-404 264-439 (1048)
81 KOG1820 Microtubule-associated 86.5 8 0.00017 52.3 14.3 150 250-403 249-445 (815)
82 KOG2025 Chromosome condensatio 84.2 1.6E+02 0.0035 39.3 29.1 215 133-401 75-294 (892)
83 TIGR02270 conserved hypothetic 84.1 11 0.00024 47.5 13.3 135 236-401 42-176 (410)
84 KOG1058 Vesicle coat complex C 83.1 48 0.001 44.1 18.1 102 250-360 317-422 (948)
85 smart00638 LPD_N Lipoprotein N 83.0 38 0.00082 44.4 18.2 144 246-399 389-543 (574)
86 COG1413 FOG: HEAT repeat [Ener 82.3 9.3 0.0002 46.2 11.5 136 240-401 94-242 (335)
87 KOG1058 Vesicle coat complex C 82.2 2E+02 0.0043 38.8 27.9 144 248-403 14-165 (948)
88 COG5181 HSH155 U2 snRNP splice 81.0 1.1E+02 0.0023 40.1 19.6 302 45-359 599-943 (975)
89 PF12231 Rif1_N: Rap1-interact 80.8 1.6E+02 0.0035 36.8 27.0 320 58-403 3-354 (372)
90 COG1413 FOG: HEAT repeat [Ener 80.4 13 0.00028 45.0 11.8 90 255-362 44-134 (335)
91 KOG1059 Vesicle coat complex A 80.1 2.3E+02 0.0049 38.1 34.9 112 248-367 103-214 (877)
92 PF12074 DUF3554: Domain of un 78.6 78 0.0017 38.7 17.8 204 139-347 19-257 (339)
93 KOG1967 DNA repair/transcripti 78.1 10 0.00022 50.8 10.3 149 253-401 866-1024(1030)
94 KOG1992 Nuclear export recepto 76.9 52 0.0011 44.2 15.8 117 105-226 603-734 (960)
95 KOG0392 SNF2 family DNA-depend 75.5 27 0.00059 48.5 13.2 137 233-374 792-944 (1549)
96 KOG0413 Uncharacterized conser 75.2 31 0.00067 46.6 13.1 131 267-402 944-1074(1529)
97 KOG1943 Beta-tubulin folding c 74.5 3.7E+02 0.0081 37.7 32.2 180 196-405 514-709 (1133)
98 KOG0368 Acetyl-CoA carboxylase 74.1 1.6E+02 0.0034 42.4 19.3 220 99-336 768-1022(2196)
99 KOG1240 Protein kinase contain 74.0 26 0.00057 48.4 12.5 156 234-390 440-635 (1431)
100 PF14676 FANCI_S2: FANCI solen 73.9 3.9 8.3E-05 44.9 4.3 120 238-360 39-158 (158)
101 KOG0166 Karyopherin (importin) 73.8 8.6 0.00019 49.3 7.8 141 254-398 152-305 (514)
102 KOG1243 Protein kinase [Genera 73.5 11 0.00023 49.5 8.6 108 293-400 327-436 (690)
103 KOG1059 Vesicle coat complex A 72.8 42 0.00091 44.4 13.4 165 236-401 163-365 (877)
104 cd00256 VATPase_H VATPase_H, r 72.2 2.9E+02 0.0063 35.4 21.0 64 59-126 65-132 (429)
105 KOG1967 DNA repair/transcripti 72.1 27 0.00058 47.2 11.8 123 234-357 884-1018(1030)
106 KOG2213 Apoptosis inhibitor 5/ 71.2 2E+02 0.0044 36.0 17.9 239 292-571 22-288 (460)
107 PF04826 Arm_2: Armadillo-like 70.5 1.3E+02 0.0029 35.7 16.2 145 209-355 88-254 (254)
108 PF12765 Cohesin_HEAT: HEAT re 70.5 5.2 0.00011 34.3 3.5 39 358-396 3-42 (42)
109 COG5537 IRR1 Cohesin [Cell div 69.0 6.7 0.00014 50.3 5.3 105 294-402 273-387 (740)
110 PF01347 Vitellogenin_N: Lipop 68.7 57 0.0012 43.1 14.2 219 143-398 348-586 (618)
111 COG5181 HSH155 U2 snRNP splice 68.6 2.4E+02 0.0052 37.2 18.2 259 138-402 395-718 (975)
112 KOG0166 Karyopherin (importin) 67.6 3.8E+02 0.0083 35.0 23.1 170 258-434 70-252 (514)
113 PF02985 HEAT: HEAT repeat; I 67.5 9.8 0.00021 30.1 4.2 29 374-402 2-30 (31)
114 PF05641 Agenet: Agenet domain 66.5 9.8 0.00021 35.8 4.8 35 1372-1407 3-40 (68)
115 KOG1517 Guanine nucleotide bin 66.0 1.1E+02 0.0023 42.5 15.2 137 248-404 597-735 (1387)
116 smart00638 LPD_N Lipoprotein N 65.6 81 0.0018 41.4 14.6 96 248-355 475-570 (574)
117 KOG0413 Uncharacterized conser 65.6 5.3E+02 0.012 35.9 35.2 70 290-360 467-536 (1529)
118 KOG2051 Nonsense-mediated mRNA 65.5 42 0.00091 46.0 11.7 92 237-329 481-579 (1128)
119 KOG0644 Uncharacterized conser 65.1 7 0.00015 51.6 4.5 46 1369-1414 978-1035(1113)
120 PF14911 MMS22L_C: S-phase gen 64.8 64 0.0014 40.3 12.5 185 88-279 139-370 (373)
121 PF05004 IFRD: Interferon-rela 64.8 1.3E+02 0.0028 36.7 15.0 150 255-404 87-260 (309)
122 PF10363 DUF2435: Protein of u 64.6 23 0.0005 35.6 7.2 84 260-349 9-92 (92)
123 KOG0212 Uncharacterized conser 64.4 4.5E+02 0.0097 34.6 28.5 269 124-403 27-326 (675)
124 PF13251 DUF4042: Domain of un 63.5 72 0.0016 36.1 11.6 130 270-402 2-175 (182)
125 PF11864 DUF3384: Domain of un 63.4 4.3E+02 0.0093 34.1 22.4 166 108-283 147-330 (464)
126 PF15057 DUF4537: Domain of un 61.1 16 0.00035 38.5 5.7 41 1373-1414 1-41 (124)
127 PF05327 RRN3: RNA polymerase 61.0 71 0.0015 42.1 12.8 188 94-315 31-221 (563)
128 KOG2038 CAATT-binding transcri 60.9 5.8E+02 0.013 34.8 21.8 66 335-401 305-370 (988)
129 PF00567 TUDOR: Tudor domain; 59.7 19 0.00041 36.0 5.8 48 1368-1416 50-98 (121)
130 KOG1241 Karyopherin (importin) 59.5 6.1E+02 0.013 34.6 28.8 157 246-403 355-532 (859)
131 KOG1240 Protein kinase contain 58.2 7.5E+02 0.016 35.5 20.9 132 267-403 591-727 (1431)
132 PF12530 DUF3730: Protein of u 58.1 3.6E+02 0.0078 31.5 16.9 129 617-748 55-190 (234)
133 KOG2213 Apoptosis inhibitor 5/ 57.9 4.9E+02 0.011 32.9 24.8 250 266-536 36-334 (460)
134 KOG0211 Protein phosphatase 2A 57.8 32 0.0007 46.5 8.8 135 266-403 210-347 (759)
135 PF11717 Tudor-knot: RNA bindi 57.5 25 0.00053 31.8 5.4 43 1372-1415 3-50 (55)
136 COG5218 YCG1 Chromosome conden 56.3 6.1E+02 0.013 33.6 26.1 214 93-361 47-264 (885)
137 PF05918 API5: Apoptosis inhib 56.0 1.2E+02 0.0027 39.7 13.3 82 266-354 34-115 (556)
138 PF03378 CAS_CSE1: CAS/CSE pro 55.8 1.1E+02 0.0025 39.0 12.9 178 66-258 44-242 (435)
139 PF08167 RIX1: rRNA processing 55.2 88 0.0019 34.5 10.4 139 594-763 19-163 (165)
140 KOG3026 Splicing factor SPF30 55.2 18 0.00039 41.7 5.0 36 1370-1405 91-126 (262)
141 KOG2393 Transcription initiati 53.1 30 0.00065 44.3 6.9 23 1565-1588 293-315 (555)
142 PF12830 Nipped-B_C: Sister ch 52.7 54 0.0012 36.9 8.4 70 333-403 7-76 (187)
143 PLN03076 ARF guanine nucleotid 52.4 1.1E+03 0.025 35.6 31.4 159 41-210 1084-1257(1780)
144 KOG0211 Protein phosphatase 2A 52.0 3.2E+02 0.0069 37.4 16.5 139 253-393 275-419 (759)
145 KOG4413 26S proteasome regulat 51.0 1.1E+02 0.0023 37.4 10.5 164 115-289 63-250 (524)
146 PF05804 KAP: Kinesin-associat 50.6 8.3E+02 0.018 33.4 21.4 166 537-706 464-648 (708)
147 KOG2933 Uncharacterized conser 47.7 1E+02 0.0023 37.4 9.9 162 236-402 107-278 (334)
148 KOG1991 Nuclear transport rece 47.5 1E+03 0.022 33.5 44.5 299 156-470 102-495 (1010)
149 PLN00104 MYST -like histone ac 45.8 1.1E+02 0.0024 39.1 10.2 37 1371-1407 55-97 (450)
150 COG5537 IRR1 Cohesin [Cell div 44.8 1.2E+02 0.0026 39.7 10.3 130 264-404 285-428 (740)
151 PF04118 Dopey_N: Dopey, N-ter 44.1 1.6E+02 0.0034 36.0 11.0 107 243-360 131-251 (307)
152 PF13251 DUF4042: Domain of un 43.6 1.4E+02 0.0031 33.8 9.8 98 263-363 49-174 (182)
153 KOG1832 HIV-1 Vpr-binding prot 43.4 14 0.0003 49.2 2.1 23 834-856 752-774 (1516)
154 KOG1078 Vesicle coat complex C 43.3 1.1E+03 0.023 32.6 28.5 285 307-656 220-522 (865)
155 KOG1991 Nuclear transport rece 40.7 1.3E+03 0.027 32.7 26.8 111 240-353 445-566 (1010)
156 COG5219 Uncharacterized conser 40.5 3.7E+02 0.008 37.1 13.8 144 156-321 1089-1264(1525)
157 KOG1242 Protein containing ada 39.3 1.1E+03 0.023 31.5 33.0 186 241-434 42-231 (569)
158 PF14500 MMS19_N: Dos2-interac 39.3 7.4E+02 0.016 29.6 23.0 64 337-402 2-70 (262)
159 KOG1061 Vesicle coat complex A 39.1 1.2E+03 0.026 31.9 29.8 124 238-367 70-193 (734)
160 KOG1077 Vesicle coat complex A 38.8 1.2E+02 0.0026 40.4 9.1 120 238-362 307-432 (938)
161 KOG2956 CLIP-associating prote 38.6 5.9E+02 0.013 32.9 14.7 163 156-323 301-476 (516)
162 KOG1832 HIV-1 Vpr-binding prot 38.3 19 0.0004 48.1 2.1 22 1174-1195 1123-1144(1516)
163 PF04826 Arm_2: Armadillo-like 38.1 1.3E+02 0.0029 35.7 9.0 135 265-399 24-161 (254)
164 PF12074 DUF3554: Domain of un 38.1 1.5E+02 0.0033 36.3 9.9 87 311-401 3-90 (339)
165 KOG4413 26S proteasome regulat 37.8 2.1E+02 0.0046 35.0 10.3 129 267-402 53-201 (524)
166 KOG2062 26S proteasome regulat 37.8 1.4E+02 0.0031 40.0 9.6 96 261-369 494-590 (929)
167 PF08569 Mo25: Mo25-like; Int 37.4 9E+02 0.02 30.1 16.9 69 260-329 215-287 (335)
168 KOG2160 Armadillo/beta-catenin 37.1 3.5E+02 0.0076 33.6 12.3 96 262-362 132-239 (342)
169 KOG0943 Predicted ubiquitin-pr 36.9 71 0.0015 44.1 6.8 15 952-966 1214-1228(3015)
170 KOG0168 Putative ubiquitin fus 35.8 1.3E+03 0.028 32.2 17.6 39 44-82 330-369 (1051)
171 PF12530 DUF3730: Protein of u 35.1 7.9E+02 0.017 28.7 16.1 71 240-317 107-178 (234)
172 PF14664 RICTOR_N: Rapamycin-i 35.1 1.2E+02 0.0025 38.1 8.2 112 255-368 26-142 (371)
173 cd03568 VHS_STAM VHS domain fa 35.1 1.1E+02 0.0023 33.4 6.9 71 595-669 36-113 (144)
174 KOG2153 Protein involved in th 35.0 1.1E+02 0.0023 40.5 7.8 54 312-365 302-355 (704)
175 PF05918 API5: Apoptosis inhib 34.3 1.3E+03 0.027 30.8 25.1 158 649-819 145-315 (556)
176 PF08506 Cse1: Cse1; InterPro 33.7 7.8E+02 0.017 30.9 15.1 223 501-739 102-369 (370)
177 KOG2032 Uncharacterized conser 32.6 3.6E+02 0.0078 34.9 11.6 179 262-449 188-372 (533)
178 KOG2160 Armadillo/beta-catenin 32.4 3.3E+02 0.0071 33.8 11.1 145 256-403 85-242 (342)
179 PF03224 V-ATPase_H_N: V-ATPas 32.2 4.4E+02 0.0096 31.9 12.5 65 11-78 23-87 (312)
180 PF08569 Mo25: Mo25-like; Int 31.5 1.1E+03 0.024 29.3 15.8 167 222-402 50-239 (335)
181 COG5064 SRP1 Karyopherin (impo 31.3 3.4E+02 0.0073 33.6 10.6 137 256-399 73-251 (526)
182 KOG2050 Puf family RNA-binding 31.3 7.7E+02 0.017 32.7 14.3 123 391-542 246-376 (652)
183 KOG4224 Armadillo repeat prote 31.1 6.6E+02 0.014 31.5 13.0 146 253-401 207-363 (550)
184 COG5116 RPN2 26S proteasome re 31.0 85 0.0018 40.6 6.0 62 304-369 525-587 (926)
185 KOG0168 Putative ubiquitin fus 31.0 9.1E+02 0.02 33.5 15.2 183 585-770 243-440 (1051)
186 PF11707 Npa1: Ribosome 60S bi 30.9 1.7E+02 0.0036 36.0 8.6 78 250-327 52-146 (330)
187 PF06972 DUF1296: Protein of u 30.1 97 0.0021 28.9 4.6 36 314-353 7-42 (60)
188 KOG0567 HEAT repeat-containing 30.0 1.1E+03 0.023 28.7 14.5 147 237-404 53-252 (289)
189 KOG0915 Uncharacterized conser 29.9 2.1E+03 0.046 32.1 33.3 258 138-403 998-1308(1702)
190 PF13764 E3_UbLigase_R4: E3 ub 29.6 9.8E+02 0.021 33.3 15.8 132 42-190 84-235 (802)
191 PF00514 Arm: Armadillo/beta-c 29.1 85 0.0018 26.2 4.0 29 334-362 12-40 (41)
192 KOG1243 Protein kinase [Genera 28.9 5.6E+02 0.012 34.6 12.9 148 248-397 324-472 (690)
193 KOG1293 Proteins containing ar 28.6 3.3E+02 0.0071 36.3 10.7 173 258-441 335-524 (678)
194 PF12830 Nipped-B_C: Sister ch 28.2 4.3E+02 0.0093 29.8 10.6 66 295-365 8-76 (187)
195 PF02237 BPL_C: Biotin protein 28.1 1.4E+02 0.0031 26.2 5.3 39 1372-1413 2-40 (48)
196 PF14664 RICTOR_N: Rapamycin-i 27.6 9.6E+02 0.021 30.2 14.4 198 196-402 44-270 (371)
197 PF08324 PUL: PUL domain; Int 27.4 2.5E+02 0.0055 33.0 9.1 97 266-362 122-230 (268)
198 PF08605 Rad9_Rad53_bind: Fung 27.3 1E+02 0.0023 33.1 5.2 49 1383-1434 21-69 (131)
199 PF14228 MOR2-PAG1_mid: Cell m 27.1 2.2E+03 0.047 31.3 28.5 126 269-402 485-611 (1120)
200 cd03561 VHS VHS domain family; 26.4 5.1E+02 0.011 27.5 10.3 81 321-403 26-114 (133)
201 KOG1820 Microtubule-associated 25.4 1.7E+03 0.036 31.2 16.9 104 298-401 256-365 (815)
202 PF10266 Strumpellin: Heredita 25.2 9.8E+02 0.021 34.3 14.8 24 624-647 583-606 (1081)
203 cd06561 AlkD_like A new struct 25.0 2.7E+02 0.0059 30.9 8.3 77 309-393 120-196 (197)
204 KOG3064 RNA-binding nuclear pr 24.5 26 0.00056 40.9 0.1 18 1602-1619 244-261 (303)
205 PF11919 DUF3437: Domain of un 23.8 1.7E+02 0.0037 29.5 5.7 57 347-404 2-61 (90)
206 KOG0946 ER-Golgi vesicle-tethe 23.5 3.7E+02 0.0079 36.7 9.8 91 235-365 107-197 (970)
207 KOG3723 PH domain protein Melt 23.5 1.8E+03 0.04 29.3 19.8 49 237-286 182-230 (851)
208 PF01603 B56: Protein phosphat 22.9 1.6E+03 0.036 28.4 18.5 254 315-644 110-385 (409)
209 PF12612 TFCD_C: Tubulin foldi 22.2 3.2E+02 0.007 30.9 8.3 111 62-190 21-137 (193)
210 PF08767 CRM1_C: CRM1 C termin 22.2 5E+02 0.011 31.9 10.4 125 159-283 43-194 (319)
211 cd03569 VHS_Hrs_Vps27p VHS dom 21.8 2.6E+02 0.0056 30.3 7.0 71 595-669 40-117 (142)
212 KOG2140 Uncharacterized conser 20.8 3.5E+02 0.0075 35.2 8.5 109 702-829 220-331 (739)
213 cd03567 VHS_GGA VHS domain fam 20.7 3.1E+02 0.0067 29.8 7.3 71 595-669 37-119 (139)
214 KOG0162 Myosin class I heavy c 20.3 7.6E+02 0.016 33.5 11.5 218 155-405 455-711 (1106)
No 1
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=8e-135 Score=1310.61 Aligned_cols=1061 Identities=30% Similarity=0.461 Sum_probs=893.5
Q ss_pred eehhhhHHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhcchhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCChh
Q 000321 9 LLLGNVLHFFLLNLQQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDD 88 (1670)
Q Consensus 9 ~~~~~~~~~LlkrLk~l~~~Ls~~dQ~~~~~~~~sl~~~~~~Lv~~~LL~HkD~~Vra~vAcCLadIlRI~APdaPytd~ 88 (1670)
++--+.+++||+||++|++||.+++|++ .+++++.|++.+|+++.||+|+|+|||+|||||++||||||||+|||++.
T Consensus 13 ~~~~~s~~ell~rLk~l~~~l~~~~qd~--~~~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~ 90 (1266)
T KOG1525|consen 13 SLNPISKDELLKRLKKLANCLASLDQDN--LDLASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDE 90 (1266)
T ss_pred ccCcccHHHHHHHHHHHHHHHhhcccCc--hhHHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHH
Confidence 3444567899999999999999999996 79999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhheeeccCCchHHHHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 000321 89 VLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMI 168 (1670)
Q Consensus 89 ~LkdIF~lfi~qf~~L~d~~~p~f~q~~~LLe~La~vks~vl~~DL~~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~ 168 (1670)
||+|||++|++||.||+|+.+|||.|||||||+||.||.|++|.|.+|++++.+||++||++++.+|+.+|.+ |.+||+
T Consensus 91 ~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~-~~~i~~ 169 (1266)
T KOG1525|consen 91 QLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFN-MLDIAI 169 (1266)
T ss_pred HHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHHHHH-HHHHHH
Confidence 9999999999999999999999999999999999999955555555599999999999999999999999999 999999
Q ss_pred HHhcccccccHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCCC-CCCCCcchHHHHHHHH
Q 000321 169 VLLEESEDIQEDLLVILLSALGRNKN---DTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDS-RPGHSHIDYHEVIYDV 244 (1670)
Q Consensus 169 ~vIeEse~vp~~vLd~IL~~l~~~~~---~~a~~lA~~v~~~~~dkL~~~I~qyf~~il~~~~-~~~~~~~~~h~Li~eL 244 (1670)
.+|.|.+.||.++|++||.+|+.++. ..|++||..+++.|++.+++.+++||++.+.++. ..+....++|++|++|
T Consensus 170 ~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L 249 (1266)
T KOG1525|consen 170 MLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILEL 249 (1266)
T ss_pred HHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHH
Confidence 99999999999999999999976543 3999999999999999999999999999888764 4456677899999999
Q ss_pred HhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHh
Q 000321 245 YRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLL 324 (1670)
Q Consensus 245 ~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~ 324 (1670)
|+++|++|++|||||++||+++++.+|+.||.++|+||+.+++.++.+|+++|.+||+||+|++++||++||+++++||.
T Consensus 250 ~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~ 329 (1266)
T KOG1525|consen 250 WRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLL 329 (1266)
T ss_pred HHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH-H
Q 000321 325 TDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG-C 403 (1670)
Q Consensus 325 ~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~Vs~elL~~laeR~RDKK~~VR~eAm~~La~LY~~-~ 403 (1670)
+||+...+..+..+++.|+.|++++||..||.++|+++.+.+..++. +|+.|+||+||||+.||++||++|+++|+. |
T Consensus 330 ~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~ 408 (1266)
T KOG1525|consen 330 NNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKNVY 408 (1266)
T ss_pred cCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99998888888999999999999999999999999999999999999 999999999999999999999999999996 5
Q ss_pred hhhccCCCcchhccccchHHHhhhhccCCCCc-hhHHHHhhccCcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000321 404 CLRNFNGSINQNEFEWIPGKILRCLYDKDFGS-DTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQK 482 (1670)
Q Consensus 404 ~~~~~~~~~~~~~~~wIPs~IL~~~Y~nD~~~-~lVE~vL~e~LlP~~~~~~~R~~~ll~l~~~LD~~~~kal~~il~~k 482 (1670)
|..++.+...+..|.|||++||++||.++.+. .+||++|+++|+|+++++++|+++|+++|.+||..+.++|..|+++|
T Consensus 409 ~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~~D~~a~kaf~~i~~~q 488 (1266)
T KOG1525|consen 409 CLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHLYQLLAGLDLNAHKAFNEILKRQ 488 (1266)
T ss_pred HhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcccHhhhhHHHHHHHHH
Confidence 55666777888999999999999999998764 48999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHhh--ccHHHHHHHHHHhcCCCCHHHH
Q 000321 483 QRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQL--KDANVWKILMNLLDSNTSFDQA 560 (1670)
Q Consensus 483 ~~l~~~~~~~l~l~~~~~~~d~~ei~~kl~~~I~~Ls~~FPDp~Ka~~~L~kf~kL--nD~RiykLLk~~id~~td~~t~ 560 (1670)
.++|.+++.||.+++..+.++ .++++...|..++..||||.......++|++. .+..+...+..+..+..+|.++
T Consensus 489 ~~ls~~vr~~I~~~k~~~~d~---~~k~i~~~i~~i~~~lpD~~s~~~~~~~f~~~L~~~~~~~s~~~~L~~~~~~C~~l 565 (1266)
T KOG1525|consen 489 SRLSEEVRDYITLSKTPNTDD---SMKKIFSKIVKISENLPDPSSRSYDSMKFADVLETLAKVRSCLVSLDSPSISCKEL 565 (1266)
T ss_pred HHHHHHHHHHhccccCCCccH---hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 999999999999988765433 77788888999999999999999999999653 4678888999999998888877
Q ss_pred HHHHHHHHHHhc----CCCchHHHHHHHHHhhhccccCh-hHHHHHHHHHHhhcc-------cch--hhhHHHHHHHHHH
Q 000321 561 FTGRDDLLKILG----AKHRLYDFLSTLSMKCSYLLFNK-EHVKEILLEVAAQKS-------SAN--AQFMQSCMDILGI 626 (1670)
Q Consensus 561 ~~a~~ELlkkL~----~~~~l~e~l~~Ll~R~S~li~Nk-s~V~~LL~~v~~~~~-------~~~--~~~~~~a~eLL~~ 626 (1670)
.-.+++++.+++ .++.+..+.+.|+.|..++.+.. +.+..++........ .++ .........||.+
T Consensus 566 ~~~v~~~l~e~~~~~~s~nlF~~~~~~li~~I~~v~~di~~s~~~~ik~~~~~i~~~~~~l~e~v~~~~a~kl~~~lle~ 645 (1266)
T KOG1525|consen 566 LITVKEILFELGRKKQSKNLFSSMEKELIERIAEVSLDILESISALIKLNNIVIAEVSLLLLEGVLSEKALKLKKYLLEA 645 (1266)
T ss_pred HHHHHHHHHHHhhhccccchHHHHHHHHHHHhcchhhhhHHHHHHHHhhhhhhHHHHHhhcccccchhhHHhHHHHHHHH
Confidence 555566665555 34557788899999999988887 777777765432111 111 1223456789999
Q ss_pred HHhhCCcCcccc--HHHHHHHHhhccccchHHHHHHHHHhhcchhhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHh
Q 000321 627 LARFSPLLLGGT--EEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAA 704 (1670)
Q Consensus 627 IS~~~P~lFk~~--v~~Li~lL~~~~~~~~~~aLkiLak~~k~~~e~~~~~~s~l~~~L~~lal~Gtp~qAKyAvr~Laa 704 (1670)
+|..+|.+|... +..++..+.+..+...+.+|+.+...|..+....+...+.+...+.+++..|+|.|||+|++|+.+
T Consensus 646 ls~~~~~~~~~s~~v~~i~~~~~~~~~~~~~~vLk~~~~~~~~~~~~~~si~~~~~~~~~~~~~~g~~~q~k~~~~~i~~ 725 (1266)
T KOG1525|consen 646 LSSIHPDLFKYSESVLSILEKLFSEPDVVAPVVLKKLESQGKKIEVEAPSILSTLSRVLAKKELSGTPEQAKLAKRCIKA 725 (1266)
T ss_pred hhhcCcchhhhhHHHHHHHHHhccchhhhhHHHHHHHHhccccccccchhhhcchhhhhhHHHHcCCcchhHHHhhhhhH
Confidence 999999998876 466666666666667788999998888544444455667789999999999999999999999998
Q ss_pred hcCCCccchHHHHHHHHHHhhhhc-----CCCchHHHHHHHHHhhccccccc-chHHHHHHHHHhhhccccccCCC-CCC
Q 000321 705 ITKDDGLKSLSVLYKRLVDMLEEK-----THLPAVLQSLGCIAQTAMPVFET-RESEIEEFIKSKILRCSNKIRND-TKA 777 (1670)
Q Consensus 705 ~~~~~~~~~~~~L~~~L~~~L~~~-----~~l~t~L~sL~~Iaq~aP~vfe~-~~~eI~~fiik~ILl~~~~~~~~-~~~ 777 (1670)
+...... .+..++..+.+.+... .++.+.+.+||+|+.+.|..|.+ ....+..||+|+++..++.+++. ...
T Consensus 726 ~~~s~~~-~l~q~~~~~~d~l~~~~~~~~e~~~~~i~~lgei~~~~p~~~~~~~k~~~~~~IvK~~~~~~~~~~e~~~~~ 804 (1266)
T KOG1525|consen 726 ILQSKFC-KLKQTFEEIKDNLLEDLTSELEGLRTPIVTLGEIFLDLPSQFLDPLKSDVAKFIVKKVLSNDDSPGEKNKSK 804 (1266)
T ss_pred Hhhhhhh-HHHHHhhhhHHHHhhhhhhhhhccccchhhhhhHhhhccHhhcchhhhhhHHHHHHHHhcCCCccccccCcc
Confidence 8876422 3445677777776544 49999999999999999966655 47889999999998888888775 667
Q ss_pred CCCCc----hhhHHHHHHHHHHHHHhhcCCCcccc--ccchHHHHHHHHHhh-ccCccccCCCCChhhHhHhHHHHHHHH
Q 000321 778 CWDDR----SELCLLKIYGIKTLVKSYLPVKDAHI--RPGIDDLLGILKSML-SYGEMSEDIESSSVDKAHLRLASAKAV 850 (1670)
Q Consensus 778 ~W~d~----se~~~aKi~aLK~Lvn~ll~~~~~~~--~~~i~~ll~lL~~il-~~GEl~~~~~tp~~~ksrLRLaAa~~l 850 (1670)
.|++. +..+.+|+++++++++||++...+.- +-.+...+.+|..++ +.|++..+..+|..++++||+.|+.++
T Consensus 805 ~~~P~~~~~~p~~~~k~~a~~L~~~~l~~~~~d~~~~e~s~~~~~~~L~~ll~~~gdl~~~~~~~~~~~sklr~~a~~~i 884 (1266)
T KOG1525|consen 805 EWLPSDKLLSPNTSLKVLAIKLLVRRLLDLEEDKEKDELSTPRSFRLLSKLLNSEGDLTEQNRDPKSDQSKLRLTAKITI 884 (1266)
T ss_pred ccCCcccccchhhhhHHHHHHHhhhhccccccCcchhhhcchhHHHHHHHHHhhcCCCCcccCCcchhhhhhhhhhhhee
Confidence 78662 45688899999999999999876421 111112566777765 699999998899999999999999999
Q ss_pred HHhhhc--cCCCCCHHHHHHHhhcccCCchhHHHHHHHHHHHhHhcCCCchhhHHHHHhhhccCCCCchHHHHHHHHHHH
Q 000321 851 LRLSRQ--WDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADII 928 (1670)
Q Consensus 851 LKLAr~--~d~~I~~d~f~l~~l~~qD~~~~VR~~Fl~KL~kyL~~~~L~~rY~~lf~laa~a~ep~~~~e~K~~l~~~I 928 (1670)
||||.. +..++.++.|..+.+.++|++++||..|+.||++++....+|.-|++.|.+++.+..... ..-+....+-.
T Consensus 885 lKl~~~~~~~e~~~~~~~~~~~~~i~de~~~vR~~f~~kl~k~l~~i~lp~~~~a~~~l~~~d~~~~~-~~~~~~~~t~~ 963 (1266)
T KOG1525|consen 885 LKLASEKSYHEFINAEQYEKLILLISDECLQVRLVFLLKLHKGLSRIKLPLEYMAKFKLCAPDVSKEL-LANKREEETKN 963 (1266)
T ss_pred eecccccchhccCCHHHHHHHHHHhcCCchhHHHHHHHHccccccccccchhhhhHHHHhccchhhhh-hhHHHHhhhhc
Confidence 999976 578899999988888899999999999999999999999999999999988653211100 00011111111
Q ss_pred HHHHHHHHhhhhhccccccccCCchhhhHHHHhhccCCCCCCcchhhcHHHHHHHHHHHHHHHHHhhccCcccccccccc
Q 000321 929 QMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNK 1008 (1670)
Q Consensus 929 ~~~~~~r~r~~s~~s~~~~~~~~pEy~LprLIHLLAHH~~Pd~ee~~d~~a~~~~~~~L~F~L~~L~~~~~~~~~~~~~~ 1008 (1670)
..+++.+.....+.++. .....|||+.+|.+|++||| |++...+++..|-.+..++||.++.|... .
T Consensus 964 ~~~~r~~t~~e~~~s~~-~~~~~~e~V~~~~~~~la~d--~~~~~~edv~~l~~~ke~~~~vl~~l~~~----------~ 1030 (1266)
T KOG1525|consen 964 SASRREQTKFERATSDG-TLAHLPEYVGSYVIHLLAHD--PDFVKAEDVDSLSDLKECLWFVLEDLDEE----------N 1030 (1266)
T ss_pred chhhhhhhhhhhccCch-hhhhhhHHhhhhhhhhhccC--ccccccchhhhHHHHHHhHHHHHhhhhhh----------h
Confidence 22222233333333322 15688999999999999999 99998889999998899999999999532 1
Q ss_pred ccH--HHHHHHHHHhhcccccccc---ccCcchHHHHHHHHHHHHHHhc-cCCCCcccccccCCCccccCCCCCCCcccc
Q 000321 1009 ESI--SVIISIFRSIKCSEDIVDA---AKSKNSHAICDLGLSITKRLSR-MEDNSQGVFSSVSLPSTLYKPYEKKEGDDS 1082 (1670)
Q Consensus 1009 eNi--SlLy~La~rIKq~rDa~d~---~~S~nlY~LcDLAq~IIk~~a~-k~W~lqsyPGkV~LPs~LF~p~~s~~~~~a 1082 (1670)
+|+ .+.-.+.+-+++.+|...+ ..+..||+|||+|+.|+..... .+|...+|||+++||..+|.+..+. +
T Consensus 1031 ~n~~~~~~~~~~~~~~~~~d~~s~~d~~~~~kl~~l~d~a~~i~~sk~~~~s~~~tt~~~~~~lp~~~~~~~~~k----n 1106 (1266)
T KOG1525|consen 1031 ENNQHKFWKREKEEIKGSEDEESPDDVGDNIKLYTLCDLAQCIILSKSTKFSNSSTTSPGKLNLPALSFTSPKDK----N 1106 (1266)
T ss_pred ccchhHHHHHHHhhhhcchhhcCCcccCCCceeeeHHhHHHHHHhcccccccCCCCCCCccccCchhhhCCcchh----h
Confidence 232 2333344446667777643 3456799999999999997775 6799999999999999999998642 2
Q ss_pred cccccccccccchh
Q 000321 1083 LASERQTWLADESV 1096 (1670)
Q Consensus 1083 ~~~~~k~yLpde~~ 1096 (1670)
-...++|+|+++-
T Consensus 1107 -~~~~k~~i~e~~~ 1119 (1266)
T KOG1525|consen 1107 -FINNKIYIPEETE 1119 (1266)
T ss_pred -hccccccCCchhc
Confidence 2468999999943
No 2
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=5.6e-14 Score=186.14 Aligned_cols=484 Identities=17% Similarity=0.138 Sum_probs=248.3
Q ss_pred CcCccccHHHHHHHHhhccccchHHHHHHHHHhhcchhhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCcc
Q 000321 632 PLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGL 711 (1670)
Q Consensus 632 P~lFk~~v~~Li~lL~~~~~~~~~~aLkiLak~~k~~~e~~~~~~s~l~~~L~~lal~Gtp~qAKyAvr~Laa~~~~~~~ 711 (1670)
+-+|..-+..|+..|.. ..+.++..++..++.............++..|-++..+..||.+.+|..+..+...
T Consensus 583 ~nlF~~~~~~li~~I~~-------v~~di~~s~~~~ik~~~~~i~~~~~~l~e~v~~~~a~kl~~~lle~ls~~~~~~~~ 655 (1266)
T KOG1525|consen 583 KNLFSSMEKELIERIAE-------VSLDILESISALIKLNNIVIAEVSLLLLEGVLSEKALKLKKYLLEALSSIHPDLFK 655 (1266)
T ss_pred cchHHHHHHHHHHHhcc-------hhhhhHHHHHHHHhhhhhhHHHHHhhcccccchhhHHhHHHHHHHHhhhcCcchhh
Confidence 44888888888888776 34455554444444332223333445566777888889999999999977665432
Q ss_pred chHHHHHHHHHHhhh--hcCCCchHHHHHHHHHhhcccccccchHHHHHHHHHhhhccccccCCCCCCCCCCchhhHHHH
Q 000321 712 KSLSVLYKRLVDMLE--EKTHLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLK 789 (1670)
Q Consensus 712 ~~~~~L~~~L~~~L~--~~~~l~t~L~sL~~Iaq~aP~vfe~~~~eI~~fiik~ILl~~~~~~~~~~~~W~d~se~~~aK 789 (1670)
.+..+..|+..+. .....|.+|+.+.+++ +.+-......+..++-.-.....+...+..+..|..-...++.+
T Consensus 656 --~s~~v~~i~~~~~~~~~~~~~~vLk~~~~~~---~~~~~~~~si~~~~~~~~~~~~~~g~~~q~k~~~~~i~~~~~s~ 730 (1266)
T KOG1525|consen 656 --YSESVLSILEKLFSEPDVVAPVVLKKLESQG---KKIEVEAPSILSTLSRVLAKKELSGTPEQAKLAKRCIKAILQSK 730 (1266)
T ss_pred --hhHHHHHHHHHhccchhhhhHHHHHHHHhcc---ccccccchhhhcchhhhhhHHHHcCCcchhHHHhhhhhHHhhhh
Confidence 1223444444432 2236788888888888 33333322233333221111111111112233343333333333
Q ss_pred HHHHHHHHHhhcCCCccccccchHHHHHHHHHhhccCccccCCCCChhhHhHhHHHHHHHHHHhhhccCCCCCHHHHHHH
Q 000321 790 IYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLT 869 (1670)
Q Consensus 790 i~aLK~Lvn~ll~~~~~~~~~~i~~ll~lL~~il~~GEl~~~~~tp~~~ksrLRLaAa~~lLKLAr~~d~~I~~d~f~l~ 869 (1670)
.. .+.+......+..........-.+...++.-|++... .|++.+..++..++..|+|.. .+....+.+.+.-.
T Consensus 731 ~~---~l~q~~~~~~d~l~~~~~~~~e~~~~~i~~lgei~~~--~p~~~~~~~k~~~~~~IvK~~-~~~~~~~~e~~~~~ 804 (1266)
T KOG1525|consen 731 FC---KLKQTFEEIKDNLLEDLTSELEGLRTPIVTLGEIFLD--LPSQFLDPLKSDVAKFIVKKV-LSNDDSPGEKNKSK 804 (1266)
T ss_pred hh---HHHHHhhhhHHHHhhhhhhhhhccccchhhhhhHhhh--ccHhhcchhhhhhHHHHHHHH-hcCCCccccccCcc
Confidence 33 2223333322221111111122233334455667653 458999999999999999988 56555555555222
Q ss_pred hhcccCCchhHHHHHHHHHHHhHhcCCCchhhHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHhhhhhcccccccc
Q 000321 870 LRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADIIQMHHQMKARQISVQSDANSFA 949 (1670)
Q Consensus 870 ~l~~qD~~~~VR~~Fl~KL~kyL~~~~L~~rY~~lf~laa~a~ep~~~~e~K~~l~~~I~~~~~~r~r~~s~~s~~~~~~ 949 (1670)
.++..+..
T Consensus 805 ~~~P~~~~------------------------------------------------------------------------ 812 (1266)
T KOG1525|consen 805 EWLPSDKL------------------------------------------------------------------------ 812 (1266)
T ss_pred ccCCcccc------------------------------------------------------------------------
Confidence 22221111
Q ss_pred CCchhhhHHHHhhccCCCCCCcchhhcHHHHHHHHHHHHHHHHHhhccCcccccccc--cccc-------HHHHHHHHHH
Q 000321 950 TYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEAS--NKES-------ISVIISIFRS 1020 (1670)
Q Consensus 950 ~~pEy~LprLIHLLAHH~~Pd~ee~~d~~a~~~~~~~L~F~L~~L~~~~~~~~~~~~--~~eN-------iSlLy~La~r 1020 (1670)
.+|+++++++-+.|.||..++.....+..++...+ ..-+|..+++.+.+.+...- ..+= ..-+..+ ..
T Consensus 813 ~~p~~~~k~~a~~L~~~~l~~~~~d~~~~e~s~~~--~~~~L~~ll~~~gdl~~~~~~~~~~~sklr~~a~~~ilKl-~~ 889 (1266)
T KOG1525|consen 813 LSPNTSLKVLAIKLLVRRLLDLEEDKEKDELSTPR--SFRLLSKLLNSEGDLTEQNRDPKSDQSKLRLTAKITILKL-AS 889 (1266)
T ss_pred cchhhhhHHHHHHHhhhhccccccCcchhhhcchh--HHHHHHHHHhhcCCCCcccCCcchhhhhhhhhhhheeeec-cc
Confidence 12333333333333333333332222222222111 11122222221111110000 0000 0001111 12
Q ss_pred hhccccccccccCcchHHHHHHHHHHHH-------HHhccCCCCcccccccCCCccccCCCCCCCccccccccccccccc
Q 000321 1021 IKCSEDIVDAAKSKNSHAICDLGLSITK-------RLSRMEDNSQGVFSSVSLPSTLYKPYEKKEGDDSLASERQTWLAD 1093 (1670)
Q Consensus 1021 IKq~rDa~d~~~S~nlY~LcDLAq~IIk-------~~a~k~W~lqsyPGkV~LPs~LF~p~~s~~~~~a~~~~~k~yLpd 1093 (1670)
++.+... .+-...+.+++.+.- .++.+ ++.+=-++.||-.+..+ .+-|.|+
T Consensus 890 ~~~~~e~------~~~~~~~~~~~~i~de~~~vR~~f~~k---l~k~l~~i~lp~~~~a~-------------~~l~~~d 947 (1266)
T KOG1525|consen 890 EKSYHEF------INAEQYEKLILLISDECLQVRLVFLLK---LHKGLSRIKLPLEYMAK-------------FKLCAPD 947 (1266)
T ss_pred ccchhcc------CCHHHHHHHHHHhcCCchhHHHHHHHH---ccccccccccchhhhhH-------------HHHhccc
Confidence 3333333 344455555555443 22222 22222236666643222 3445555
Q ss_pred chhhhhhhhhcccccccccc--hhhhcccccccccCCCccchhHHHHHhhcccccCCccccccCchhhhccCCCchhhhh
Q 000321 1094 ESVLTHFESLKLETHEVVGS--EIARHEALDDLEKDGNEVPLGKMIQQLKSQGAKGGKAKKKKSSPAEVKGTENDVDILQ 1171 (1670)
Q Consensus 1094 e~~l~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1171 (1670)
.....+.......+.+.++. ++....+. .+|- +.++-++.-++.+-..++.++.+++| ||+.|.
T Consensus 948 ~~~~~~~~~~~~~t~~~~~~r~~t~~e~~~----s~~~----~~~~~e~V~~~~~~~la~d~~~~~~e------dv~~l~ 1013 (1266)
T KOG1525|consen 948 VSKELLANKREEETKNSASRREQTKFERAT----SDGT----LAHLPEYVGSYVIHLLAHDPDFVKAE------DVDSLS 1013 (1266)
T ss_pred hhhhhhhHHHHhhhhcchhhhhhhhhhhcc----Cchh----hhhhhHHhhhhhhhhhccCccccccc------hhhhHH
Confidence 55555666666666666654 22222222 3343 77888888888888889999998888 999999
Q ss_pred hhhhcccccccCccccccCCCCCCCCcccccchhhHHHHhhccCCcccc-cccCccccccccCCCCCCCCCCCC
Q 000321 1172 MVREINLDNLGVLNKFESSNGHKHFPSKQIKVDLENEEIKKRKATDVTS-FPVPKRRRSLSAHGGFRTPKSNSK 1244 (1670)
Q Consensus 1172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1670)
+++|+++.-+..++.++.+|+|.+....+.+-..-....-.+.+++.++ +.|+.+.+.+..+.+..++.+..+
T Consensus 1014 ~~ke~~~~vl~~l~~~~~n~~~~~~~~~~~~~~~~~d~~s~~d~~~~~kl~~l~d~a~~i~~sk~~~~s~~~tt 1087 (1266)
T KOG1525|consen 1014 DLKECLWFVLEDLDEENENNQHKFWKREKEEIKGSEDEESPDDVGDNIKLYTLCDLAQCIILSKSTKFSNSSTT 1087 (1266)
T ss_pred HHHHhHHHHHhhhhhhhccchhHHHHHHHhhhhcchhhcCCcccCCCceeeeHHhHHHHHHhcccccccCCCCC
Confidence 9999999999999999999999877555443222222222244444444 678888888888877777766655
No 3
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=98.94 E-value=1.4e-09 Score=95.05 Aligned_cols=43 Identities=35% Similarity=0.641 Sum_probs=36.1
Q ss_pred cccceEEEecCCCCceEEEEEEEecCCCCeeEEEccCCcceee
Q 000321 1371 LIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVL 1413 (1670)
Q Consensus 1371 lvG~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdDGd~E~l 1413 (1670)
-.|.+|++|||+++.||+|.|++||+.++.|+|.|+||++..|
T Consensus 7 ~~Ge~V~~rWP~s~lYYe~kV~~~d~~~~~y~V~Y~DGtel~l 49 (55)
T PF09465_consen 7 AIGEVVMVRWPGSSLYYEGKVLSYDSKSDRYTVLYEDGTELEL 49 (55)
T ss_dssp -SS-EEEEE-TTTS-EEEEEEEEEETTTTEEEEEETTS-EEEE
T ss_pred cCCCEEEEECCCCCcEEEEEEEEecccCceEEEEEcCCCEEEe
Confidence 4899999999999999999999999999999999999999544
No 4
>PTZ00429 beta-adaptin; Provisional
Probab=98.66 E-value=0.0001 Score=96.76 Aligned_cols=392 Identities=12% Similarity=0.060 Sum_probs=209.1
Q ss_pred ccccCCChHHHHHHHH-HHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHH
Q 000321 261 GELLTDQLDTRLKAVG-LVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTAL 339 (1670)
Q Consensus 261 ~EL~sed~~~Rl~At~-llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~eii~~L 339 (1670)
.+|.+.+...|..|.+ +++-|.-+ -+...-|+++-+.+ .=.+..+|..+--++......+|+ .+--.++.|
T Consensus 39 ~~L~s~~~~~kk~alKkvIa~mt~G--~DvS~LF~dVvk~~----~S~d~elKKLvYLYL~~ya~~~pe--lalLaINtl 110 (746)
T PTZ00429 39 NDLNGTDSYRKKAAVKRIIANMTMG--RDVSYLFVDVVKLA----PSTDLELKKLVYLYVLSTARLQPE--KALLAVNTF 110 (746)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHCC--CCchHHHHHHHHHh----CCCCHHHHHHHHHHHHHHcccChH--HHHHHHHHH
Confidence 3444566676777765 66666544 35555555555533 344778888777666665554553 233557999
Q ss_pred HhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCcchhcccc
Q 000321 340 CDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEW 419 (1670)
Q Consensus 340 ~~rL~D~DEkVR~aaVkai~~la~~~l~~Vs~elL~~laeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~~w 419 (1670)
.+=|.|+++-||.-|+.++|.+-... +-+.++..+..-+.|+.+-||+.|.-+++++|+..- .....-+|
T Consensus 111 ~KDl~d~Np~IRaLALRtLs~Ir~~~---i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p-------elv~~~~~ 180 (746)
T PTZ00429 111 LQDTTNSSPVVRALAVRTMMCIRVSS---VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM-------QLFYQQDF 180 (746)
T ss_pred HHHcCCCCHHHHHHHHHHHHcCCcHH---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc-------ccccccch
Confidence 99999999999999888887654433 223355667777899999999999999999999632 11123456
Q ss_pred chHHHhhhhccCCCCchhHHHHhhccCcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000321 420 IPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMH 499 (1670)
Q Consensus 420 IPs~IL~~~Y~nD~~~~lVE~vL~e~LlP~~~~~~~R~~~ll~l~~~LD~~~~kal~~il~~k~~l~~~~~~~l~l~~~~ 499 (1670)
+|. +..+..+.|.. .+-.. +..|..+.. -++. .+. + ....+++++......
T Consensus 181 ~~~-L~~LL~D~dp~--Vv~nA---------------l~aL~eI~~-~~~~---~l~-l------~~~~~~~Ll~~L~e~ 231 (746)
T PTZ00429 181 KKD-LVELLNDNNPV--VASNA---------------AAIVCEVND-YGSE---KIE-S------SNEWVNRLVYHLPEC 231 (746)
T ss_pred HHH-HHHHhcCCCcc--HHHHH---------------HHHHHHHHH-hCch---hhH-H------HHHHHHHHHHHhhcC
Confidence 653 44443333322 11111 001111111 0110 000 0 011122222221111
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCc--h
Q 000321 500 QDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHR--L 577 (1670)
Q Consensus 500 ~~~d~~ei~~kl~~~I~~Ls~~FPDp~Ka~~~L~kf~kLnD~RiykLLk~~id~~td~~t~~~a~~ELlkkL~~~~~--l 577 (1670)
.+=.|-. +++.|+..-|+. -.+....+..++.+|...++ +
T Consensus 232 ----~EW~Qi~---IL~lL~~y~P~~-------------------------------~~e~~~il~~l~~~Lq~~N~AVV 273 (746)
T PTZ00429 232 ----NEWGQLY---ILELLAAQRPSD-------------------------------KESAETLLTRVLPRMSHQNPAVV 273 (746)
T ss_pred ----ChHHHHH---HHHHHHhcCCCC-------------------------------cHHHHHHHHHHHHHhcCCCHHHH
Confidence 0112211 223333322221 11122334444455544433 5
Q ss_pred HHHHHHHHHhhhccccChhHHHHHHHHHHhh---cccchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccccch
Q 000321 578 YDFLSTLSMKCSYLLFNKEHVKEILLEVAAQ---KSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIK 654 (1670)
Q Consensus 578 ~e~l~~Ll~R~S~li~Nks~V~~LL~~v~~~---~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v~~Li~lL~~~~~~~~ 654 (1670)
++.++.++.-..+. +.+.+..++.++... -........-.+.+-|..|...+|.+|..|.+.+.-...|.. .+.
T Consensus 274 l~Aik~il~l~~~~--~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~-yIK 350 (746)
T PTZ00429 274 MGAIKVVANLASRC--SQELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPP-FVK 350 (746)
T ss_pred HHHHHHHHHhcCcC--CHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcH-HHH
Confidence 66666665443322 444444444333210 001111122346667888999999999987655543334433 367
Q ss_pred HHHHHHHHHhhcchhhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhhcC-CCch
Q 000321 655 EGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT-HLPA 733 (1670)
Q Consensus 655 ~~aLkiLak~~k~~~e~~~~~~s~l~~~L~~lal~Gtp~qAKyAvr~Laa~~~~~~~~~~~~L~~~L~~~L~~~~-~l~t 733 (1670)
...|.+|+..+.. ++ -..+..-|..|+.+-++.-++.||++|+.+.-.-. .....++..|++-+..+. ....
T Consensus 351 ~~KLeIL~~Lane--~N----v~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~-~~a~~cV~~Ll~ll~~~~~~v~e 423 (746)
T PTZ00429 351 LEKLRLLLKLVTP--SV----APEILKELAEYASGVDMVFVVEVVRAIASLAIKVD-SVAPDCANLLLQIVDRRPELLPQ 423 (746)
T ss_pred HHHHHHHHHHcCc--cc----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHhcCCchhHHH
Confidence 7889999887632 11 12355667889888889999999999886664211 223344555555554322 2223
Q ss_pred HHHHHHHHHhhccc
Q 000321 734 VLQSLGCIAQTAMP 747 (1670)
Q Consensus 734 ~L~sL~~Iaq~aP~ 747 (1670)
.+.++-.|.+..|.
T Consensus 424 ~i~vik~IlrkyP~ 437 (746)
T PTZ00429 424 VVTAAKDIVRKYPE 437 (746)
T ss_pred HHHHHHHHHHHCcc
Confidence 45555566565664
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=0.00039 Score=91.71 Aligned_cols=551 Identities=15% Similarity=0.169 Sum_probs=293.3
Q ss_pred HHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhccccc-CCChHHHHHHHHHHHHhhcCCCCCchhh
Q 000321 214 AGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELL-TDQLDTRLKAVGLVGDLFAVPGSANNEQ 292 (1670)
Q Consensus 214 ~~I~qyf~~il~~~~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~-sed~~~Rl~At~llG~mfs~~~~~~~~~ 292 (1670)
..+.|.+...+.-|+. ....+-+.+..+|+--| ++|.|.+-+. +.++++|..|.-++-++++..-..+...
T Consensus 4 ~~l~qLl~~l~spDn~---vr~~Ae~~l~~~~~~~~-----~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e 75 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNE---VRRQAEEALETLAKTEP-----LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAE 75 (1075)
T ss_pred hHHHHHHHHhcCCCch---HHHHHHHHHHHhhcccc-----hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHH
Confidence 3444555554443321 22246777778898888 6777777777 7799999999999999887643333222
Q ss_pred -cHHHHHHHHh-hhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCC
Q 000321 293 -FHSVFSEFLK-RLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIP 370 (1670)
Q Consensus 293 -y~~~w~~fL~-R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~Vs 370 (1670)
-.++=...|. =..-..+.||.+..+.+..|-.+-... .-++++..|..+..++|+..|-.|+-.+..+...-.....
T Consensus 76 ~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~ 154 (1075)
T KOG2171|consen 76 VQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQ 154 (1075)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccc
Confidence 2222222222 234578899999998888866654321 4579999999999999999999999998887654333333
Q ss_pred H---HHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCcchhcc-ccchHHHhhhhccCCCCchhHHHHhhccC
Q 000321 371 V---ETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEF-EWIPGKILRCLYDKDFGSDTIESVLCGSL 446 (1670)
Q Consensus 371 ~---elL~~laeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~-~wIPs~IL~~~Y~nD~~~~lVE~vL~e~L 446 (1670)
. +++..+..-|-|-...||-.|.++++.+.... ++++.....| .-+|+-|.-+-- .
T Consensus 155 ~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~----~~~~~~~~~~~~llP~~l~vl~~----------------~ 214 (1075)
T KOG2171|consen 155 PHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYL----ENNKSEVDKFRDLLPSLLNVLQE----------------V 214 (1075)
T ss_pred hhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHh----ccchHHHHHHHHHhHHHHHHhHh----------------h
Confidence 2 67778889999999999999999999876542 1223333444 456665543310 0
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhh--hcCCCcHHHHHHHHHHHHHHHhhcC
Q 000321 447 FPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQR-LQQEMQRYLSLRQM--HQDGDAPEIQKKILFCFRVMSRSFA 523 (1670)
Q Consensus 447 lP~~~~~~~R~~~ll~l~~~LD~~~~kal~~il~~k~~-l~~~~~~~l~l~~~--~~~~d~~ei~~kl~~~I~~Ls~~FP 523 (1670)
++.. ..+....++ ++|..++..-.+ ++..+...++++-. .+..-++.+......+|-+++..-|
T Consensus 215 i~~~-----d~~~a~~~l--------~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap 281 (1075)
T KOG2171|consen 215 IQDG-----DDDAAKSAL--------EALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAP 281 (1075)
T ss_pred hhcc-----chHHHHHHH--------HHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhH
Confidence 0000 000011111 111111111111 22233333444321 1212223333333334555555422
Q ss_pred CchHHHHHHHHHHhhccHHHHHHHHHHhcCCCC-----------------HHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 000321 524 EPAKAEENFLILDQLKDANVWKILMNLLDSNTS-----------------FDQAFTGRDDLLKILGAKHRLYDFLSTLSM 586 (1670)
Q Consensus 524 Dp~Ka~~~L~kf~kLnD~RiykLLk~~id~~td-----------------~~t~~~a~~ELlkkL~~~~~l~e~l~~Ll~ 586 (1670)
-..| +...+-++=+-.++.-+++.+.| +.-+..+.+-+-..|+++..
T Consensus 282 ~~~k------~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v---------- 345 (1075)
T KOG2171|consen 282 AMCK------KLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQV---------- 345 (1075)
T ss_pred HHhh------hchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhe----------
Confidence 2222 22222233333333333333333 33333444444444444432
Q ss_pred hhhccccChhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHH----HhhccccchHHHHHHHH
Q 000321 587 KCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNL----LKEENEIIKEGILHVLA 662 (1670)
Q Consensus 587 R~S~li~Nks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v~~Li~l----L~~~~~~~~~~aLkiLa 662 (1670)
++-++..+...-.+.+-.....|+--|-.|+.=|+.+..++..+++.+ |.|..|.+...+|.++.
T Consensus 346 -----------~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naig 414 (1075)
T KOG2171|consen 346 -----------LPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIG 414 (1075)
T ss_pred -----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 222333222211122222233444555566777777777776555554 55556677888899987
Q ss_pred Hhhcchhhhhhccc-chHHHH-HHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHHHHHHH----hhhhc-C--CCch
Q 000321 663 KAGGTIREQLAATS-SSVDLL-LERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVD----MLEEK-T--HLPA 733 (1670)
Q Consensus 663 k~~k~~~e~~~~~~-s~l~~~-L~~lal~Gtp~qAKyAvr~Laa~~~~~~~~~~~~L~~~L~~----~L~~~-~--~l~t 733 (1670)
+.+..+...+.... ..+.+. +..+-..++++.-.||+.+|....-.-....+.-++..|+. .|..+ + -...
T Consensus 415 Q~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~ 494 (1075)
T KOG2171|consen 415 QMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQ 494 (1075)
T ss_pred hhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHH
Confidence 76644322111101 111211 22233447788888999988755432211223334444444 34322 2 3445
Q ss_pred HHHHHHHHHhhcccccccchHHHHHHHHHhhhccccccCCCCCCCCCCchhhHHHHHHHHHHHHHhhcCCCccccccchH
Q 000321 734 VLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGID 813 (1670)
Q Consensus 734 ~L~sL~~Iaq~aP~vfe~~~~eI~~fiik~ILl~~~~~~~~~~~~W~d~se~~~aKi~aLK~Lvn~ll~~~~~~~~~~i~ 813 (1670)
.+++||.+|.-+-.-|..+-+.++.++. ++|..+.. ++-.+.+.|. +.|+.-.-++...+...+.+.
T Consensus 495 vvtaIasvA~AA~~~F~pY~d~~Mp~L~-~~L~n~~~----------~d~r~Lrgkt--mEcisli~~AVGke~F~~~a~ 561 (1075)
T KOG2171|consen 495 AVTAIASVADAAQEKFIPYFDRLMPLLK-NFLQNADD----------KDLRELRGKT--MECLSLIARAVGKEKFLPLAE 561 (1075)
T ss_pred HHHHHHHHHHHHhhhhHhHHHHHHHHHH-HHHhCCCc----------hhhHHHHhhH--HHHHHHHHHHhhhhhhhHhHH
Confidence 7889999999998889998889999875 45444321 1122333343 555554444444445666677
Q ss_pred HHHHHHHHhhccCccccCCC-CChhhHhHhHHHHH
Q 000321 814 DLLGILKSMLSYGEMSEDIE-SSSVDKAHLRLASA 847 (1670)
Q Consensus 814 ~ll~lL~~il~~GEl~~~~~-tp~~~ksrLRLaAa 847 (1670)
.++.+|-.+- +|+.....+ ++....+|-|++-+
T Consensus 562 eliqll~~~~-~~~~~~dd~~~sy~~~~warmc~i 595 (1075)
T KOG2171|consen 562 ELIQLLLELQ-GSDQDDDDPLRSYMIAFWARMCRI 595 (1075)
T ss_pred HHHHHHHhhc-ccchhhccccHHHHHHHHHHHHHH
Confidence 7777765432 334333222 23444555555443
No 6
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.24 E-value=0.056 Score=70.57 Aligned_cols=365 Identities=15% Similarity=0.157 Sum_probs=202.4
Q ss_pred hHHhHHHHHHHhcchhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHH
Q 000321 40 ILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVIL 119 (1670)
Q Consensus 40 ~~~sl~~~~~~Lv~~~LL~HkD~~Vra~vAcCLadIlRI~APdaPytd~~LkdIF~lfi~qf~~L~d~~~p~f~q~~~LL 119 (1670)
+.++...+.+.|+ ++|.-++.+||-++.-||+=|.- --...+++.+-.=+..-. +++.+.--|.-...|.
T Consensus 41 d~dSe~kvv~~lL--klL~D~ngEVQnlAVKClg~lvs------Kvke~~le~~ve~L~~~~--~s~keq~rdissi~Lk 110 (1233)
T KOG1824|consen 41 DDDSERKVVKMLL--KLLEDKNGEVQNLAVKCLGPLVS------KVKEDQLETIVENLCSNM--LSGKEQLRDISSIGLK 110 (1233)
T ss_pred cccchhHHHHHHH--HHHhccCcHHHHHHHHHHHHHHh------hchHHHHHHHHHHHhhhh--ccchhhhccHHHHHHH
Confidence 3344555555555 57899999999999999975541 112345555444333321 2333333344445555
Q ss_pred HHHHhhhhheeeccCCchHHHHHHHHHHHhhhcC-----CChhhHHHHHHHHHHHHhcccccc-cH---HHHHHHHHHhc
Q 000321 120 ETLAKYRSCVVMLDLECDELVNEMYSTFFAVASD-----DHPESVLSSMQTIMIVLLEESEDI-QE---DLLVILLSALG 190 (1670)
Q Consensus 120 e~La~vks~vl~~DL~~~~Li~~lF~~ff~~v~~-----~~~~~V~~~m~~IL~~vIeEse~v-p~---~vLd~IL~~l~ 190 (1670)
..++++.=++ ...+-..+|+.|.....+ +....+.-..++||..++.-...+ |. .++..++-++.
T Consensus 111 tvi~nl~P~~------~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~ 184 (1233)
T KOG1824|consen 111 TVIANLPPSS------SSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQ 184 (1233)
T ss_pred HHHhcCCCcc------ccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhccc
Confidence 5555543110 123444444444443322 122235566788888888776653 32 33444444443
Q ss_pred CCCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCC--CCCCCCcch-HHHHHHHHHhhCc----hhhhhhhhhhcccc
Q 000321 191 RNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGD--SRPGHSHID-YHEVIYDVYRCSP----QILSGVVPYLTGEL 263 (1670)
Q Consensus 191 ~~~~~~a~~lA~~v~~~~~dkL~~~I~qyf~~il~~~--~~~~~~~~~-~h~Li~eL~~~~P----~lL~~ViP~Le~EL 263 (1670)
.++. +-++=|.-.+..-+....+.+-.++.+.+..+ +....+..+ +-..|-+|.+.+= .-+..++|.+.+..
T Consensus 185 s~R~-aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~ 263 (1233)
T KOG1824|consen 185 SPRL-AVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYC 263 (1233)
T ss_pred ChHH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHh
Confidence 3221 22333333333333333333333333333211 112222222 3344444444432 33455777777777
Q ss_pred ---cCCChHHHHHHHHHHHHhhcCCCCCchhhc----------------------HHHHHHHHhh------------hcC
Q 000321 264 ---LTDQLDTRLKAVGLVGDLFAVPGSANNEQF----------------------HSVFSEFLKR------------LTD 306 (1670)
Q Consensus 264 ---~sed~~~Rl~At~llG~mfs~~~~~~~~~y----------------------~~~w~~fL~R------------~~D 306 (1670)
..++.++|....+.++-.+--..-++..-- -+.=..|+.- =.|
T Consensus 264 ~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD 343 (1233)
T KOG1824|consen 264 NKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDED 343 (1233)
T ss_pred cccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccc
Confidence 788999999999988865543211110000 1222222222 235
Q ss_pred CChhHHHHHHHHhHHHHhcCCCC--CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCC---------------
Q 000321 307 RIVAVRMSVLEHVKSCLLTDPSR--ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI--------------- 369 (1670)
Q Consensus 307 ~s~~VR~~~v~~~~~iL~~~p~~--~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~V--------------- 369 (1670)
.+=.||.+..++...++.++++. .--+.+-..|..|+.|-+|.|+..+..++.++-.....-+
T Consensus 344 ~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~ 423 (1233)
T KOG1824|consen 344 MSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTP 423 (1233)
T ss_pred hhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCc
Confidence 56689999999999999987642 1123444688889999999999999999987754332211
Q ss_pred ------CH---HHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCcchhccccchHHHhh
Q 000321 370 ------PV---ETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILR 426 (1670)
Q Consensus 370 ------s~---elL~~laeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~~wIPs~IL~ 426 (1670)
+. -+++.++.-+|+|+..-|.-|+..|..+-+.+-.... ...+.-+|+-+..
T Consensus 424 s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~-----~~~~slvpgI~~~ 484 (1233)
T KOG1824|consen 424 SDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALA-----QHIPSLVPGIIYS 484 (1233)
T ss_pred cchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhh-----hcccccchhhhhh
Confidence 11 2467889999999999999999999999988643211 1234455665543
No 7
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.17 E-value=0.023 Score=77.13 Aligned_cols=135 Identities=21% Similarity=0.282 Sum_probs=102.4
Q ss_pred chhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCC
Q 000321 289 NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS 368 (1670)
Q Consensus 289 ~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~ 368 (1670)
|...|....+.-|+=..--.++||..+++|...|....|.-.-..++-.++..|++|+---||-|||.-++.......+.
T Consensus 810 f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~ 889 (1692)
T KOG1020|consen 810 FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPEL 889 (1692)
T ss_pred HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHH
Confidence 45555555555555556779999999999999988887764334678899999999999999999999997655443332
Q ss_pred CCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCcchhccccchHHHhhhh-ccCCCCc
Q 000321 369 IPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCL-YDKDFGS 435 (1670)
Q Consensus 369 Vs~elL~~laeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~~wIPs~IL~~~-Y~nD~~~ 435 (1670)
+ .+....+++|+.|--+.||+.||+-|-.+|-.+ ..|.-||.-+-... .++|.+.
T Consensus 890 ~-~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~-----------pdf~~i~~~cakmlrRv~DEEg 945 (1692)
T KOG1020|consen 890 I-FQYYDQIIERILDTGVSVRKRVIKILRDICEET-----------PDFSKIVDMCAKMLRRVNDEEG 945 (1692)
T ss_pred H-HHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhC-----------CChhhHHHHHHHHHHHhccchh
Confidence 2 345678899999999999999999999999864 34666666655543 3667553
No 8
>PTZ00429 beta-adaptin; Provisional
Probab=98.15 E-value=0.0058 Score=80.77 Aligned_cols=337 Identities=15% Similarity=0.102 Sum_probs=189.0
Q ss_pred HHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHH
Q 000321 238 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 317 (1670)
Q Consensus 238 h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~ 317 (1670)
|--+..+.+..|++..-++..|...|.+.|+.+|-+|.+++|.+-. ..-.+.+.....+-..|.+|-||...+-
T Consensus 89 YLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~------~~i~e~l~~~lkk~L~D~~pYVRKtAal 162 (746)
T PTZ00429 89 YLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV------SSVLEYTLEPLRRAVADPDPYVRKTAAM 162 (746)
T ss_pred HHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc------HHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 4445555677899999999999999999999999999999996543 2333456666667788999999999999
Q ss_pred HhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHH
Q 000321 318 HVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLA 397 (1670)
Q Consensus 318 ~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~Vs~elL~~laeR~RDKK~~VR~eAm~~La 397 (1670)
++..+...+|+.-....+++.|.+.|.|.|..|-..|+.++.++....... +... ...+-
T Consensus 163 ai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~-----l~l~---------------~~~~~ 222 (746)
T PTZ00429 163 GLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK-----IESS---------------NEWVN 222 (746)
T ss_pred HHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh-----hHHH---------------HHHHH
Confidence 999998888864333457778888899999999999999998875433221 1100 11111
Q ss_pred HHHHHHhhhccCCCcchhccccchHHHhhhhccCCCCc-hhHHHHhhccCcCC--CCCHHHH---HHHHHHHHhcCCHHH
Q 000321 398 DIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGS-DTIESVLCGSLFPT--GFSVKDR---VRHWVRIFSGFDRIE 471 (1670)
Q Consensus 398 ~LY~~~~~~~~~~~~~~~~~~wIPs~IL~~~Y~nD~~~-~lVE~vL~e~LlP~--~~~~~~R---~~~ll~l~~~LD~~~ 471 (1670)
+|+... .+.=.|-.-.||+++..-.+.. .-.+.+ .+.++|. ..++.-- ++.++.+....++.
T Consensus 223 ~Ll~~L----------~e~~EW~Qi~IL~lL~~y~P~~~~e~~~i-l~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~- 290 (746)
T PTZ00429 223 RLVYHL----------PECNEWGQLYILELLAAQRPSDKESAETL-LTRVLPRMSHQNPAVVMGAIKVVANLASRCSQE- 290 (746)
T ss_pred HHHHHh----------hcCChHHHHHHHHHHHhcCCCCcHHHHHH-HHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHH-
Confidence 122211 1122677778888763211111 111112 2223332 1222111 22222222222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhccHHHHHHHHHHh
Q 000321 472 MKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLL 551 (1670)
Q Consensus 472 ~kal~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kl~~~I~~Ls~~FPDp~Ka~~~L~kf~kLnD~RiykLLk~~i 551 (1670)
..... +.+.-.-++.+. ...++++=-....|..|...+|.-... ++..|+ |.
T Consensus 291 --~~~~~------~~rl~~pLv~L~-----ss~~eiqyvaLr~I~~i~~~~P~lf~~--~~~~Ff-------------~~ 342 (746)
T PTZ00429 291 --LIERC------TVRVNTALLTLS-----RRDAETQYIVCKNIHALLVIFPNLLRT--NLDSFY-------------VR 342 (746)
T ss_pred --HHHHH------HHHHHHHHHHhh-----CCCccHHHHHHHHHHHHHHHCHHHHHH--HHHhhh-------------cc
Confidence 11111 111112223331 123455544455566676666532221 222221 11
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhccccChhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhC
Q 000321 552 DSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFS 631 (1670)
Q Consensus 552 d~~td~~t~~~a~~ELlkkL~~~~~l~e~l~~Ll~R~S~li~Nks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~ 631 (1670)
-.+.+| ++...=+++-+| .|.+||..|++.+.....+.+..+...+..-+..++..+
T Consensus 343 ~~Dp~y--IK~~KLeIL~~L---------------------ane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~ 399 (746)
T PTZ00429 343 YSDPPF--VKLEKLRLLLKL---------------------VTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKV 399 (746)
T ss_pred cCCcHH--HHHHHHHHHHHH---------------------cCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC
Confidence 112233 222223444443 455566666666655443434445666677777788889
Q ss_pred CcCccccHHHHHHHHhhccccchHHHHHHHHHh
Q 000321 632 PLLLGGTEEELVNLLKEENEIIKEGILHVLAKA 664 (1670)
Q Consensus 632 P~lFk~~v~~Li~lL~~~~~~~~~~aLkiLak~ 664 (1670)
|.....++..|+++|....+ .+..++.++..+
T Consensus 400 ~~~a~~cV~~Ll~ll~~~~~-~v~e~i~vik~I 431 (746)
T PTZ00429 400 DSVAPDCANLLLQIVDRRPE-LLPQVVTAAKDI 431 (746)
T ss_pred hHHHHHHHHHHHHHhcCCch-hHHHHHHHHHHH
Confidence 99999999999999976443 333455555544
No 9
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.01 E-value=0.0016 Score=82.77 Aligned_cols=117 Identities=16% Similarity=0.161 Sum_probs=99.2
Q ss_pred HHHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHH
Q 000321 237 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVL 316 (1670)
Q Consensus 237 ~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v 316 (1670)
.|-.+..++...|+++.-++..|...|.++|+.+|-.|.++++.+-. ..--+.+...-..-..|.+|.||...+
T Consensus 62 ~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~------~~~~~~l~~~v~~ll~~~~~~VRk~A~ 135 (526)
T PF01602_consen 62 GYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRT------PEMAEPLIPDVIKLLSDPSPYVRKKAA 135 (526)
T ss_dssp HHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S------HHHHHHHHHHHHHHHHSSSHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc------cchhhHHHHHHHHHhcCCchHHHHHHH
Confidence 56677888899999999999999999999999999999999999662 223355666667777899999999999
Q ss_pred HHhHHHHhcCCCCCChHH-HHHHHHhhhCCChhHHHHHHHHHHHHh
Q 000321 317 EHVKSCLLTDPSRADAPQ-ILTALCDRLLDFDENVRKQVVAVICDV 361 (1670)
Q Consensus 317 ~~~~~iL~~~p~~~~~~e-ii~~L~~rL~D~DEkVR~aaVkai~~l 361 (1670)
-++..+....|+. ... +++.|...|.|+|..|+.+|+.+++++
T Consensus 136 ~~l~~i~~~~p~~--~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 136 LALLKIYRKDPDL--VEDELIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHHHHHHCHCC--HHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCHHH--HHHHHHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 9999999888763 334 789999999999999999999999887
No 10
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.76 E-value=0.23 Score=68.02 Aligned_cols=164 Identities=20% Similarity=0.200 Sum_probs=130.5
Q ss_pred HHHHHHHHhhCchhhhhhhhhhccc---ccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHH
Q 000321 238 HEVIYDVYRCSPQILSGVVPYLTGE---LLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMS 314 (1670)
Q Consensus 238 h~Li~eL~~~~P~lL~~ViP~Le~E---L~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~ 314 (1670)
-.+|+..-..+-++..+.=|+|..- |..+.+.+|.+|.+.|..|...+. .+-.+|+.=.+--+|++|-+..||-+
T Consensus 797 a~li~~~la~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp--~vL~~~dvq~~Vh~R~~DssasVREA 874 (1692)
T KOG1020|consen 797 AKLIVFYLAHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADP--SVLSRPDVQEAVHGRLNDSSASVREA 874 (1692)
T ss_pred HHHHHHHHHhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcCh--HhhcCHHHHHHHHHhhccchhHHHHH
Confidence 3444444444445555544444433 345679999999999999998865 57789999999999999999999999
Q ss_pred HHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCC-CHHHHHHHHHhhccCChhHHHHHH
Q 000321 315 VLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI-PVETVKLVAERLRDKSVLVKRYTM 393 (1670)
Q Consensus 315 ~v~~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~V-s~elL~~laeR~RDKK~~VR~eAm 393 (1670)
.|+.++.+++++|+ .+.+.-+.+..|..|+---||..|++.++++....++.. -+++...+..|+-|=--.|.+-+.
T Consensus 875 aldLvGrfvl~~~e--~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~ 952 (1692)
T KOG1020|consen 875 ALDLVGRFVLSIPE--LIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVR 952 (1692)
T ss_pred HHHHHhhhhhccHH--HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHH
Confidence 99999999999985 466888999999999999999999999999866554422 234566677999999888999999
Q ss_pred HHHHHHHHHHhh
Q 000321 394 ERLADIFRGCCL 405 (1670)
Q Consensus 394 ~~La~LY~~~~~ 405 (1670)
+.+.++|-.=+.
T Consensus 953 etf~klWF~p~~ 964 (1692)
T KOG1020|consen 953 ETFLKLWFTPVP 964 (1692)
T ss_pred HHHHHHhccCCC
Confidence 999999986444
No 11
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.45 E-value=0.094 Score=66.79 Aligned_cols=239 Identities=14% Similarity=0.213 Sum_probs=157.3
Q ss_pred hHHHHHHHHHhhCchhhhh-hhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHH
Q 000321 236 DYHEVIYDVYRCSPQILSG-VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMS 314 (1670)
Q Consensus 236 ~~h~Li~eL~~~~P~lL~~-ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~ 314 (1670)
++-..+..+++..|+++.. ++|.|..-|...+..++..|+.++..+ ..++..+..-.+.++........+.+|-+++.
T Consensus 133 ~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~ 211 (526)
T PF01602_consen 133 KAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIK 211 (526)
T ss_dssp HHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHH
Confidence 4667788999999999988 799999999989999999999999999 32221122334555555555558999999999
Q ss_pred HHHHhHHHHhcCCCCCCh--HHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHH
Q 000321 315 VLEHVKSCLLTDPSRADA--PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYT 392 (1670)
Q Consensus 315 ~v~~~~~iL~~~p~~~~~--~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~Vs~elL~~laeR~RDKK~~VR~eA 392 (1670)
.++....+....+. .. ..+++.+...|......|+.+++.++..+..... +-...+..+..-+.++.+.||-.|
T Consensus 212 il~~l~~~~~~~~~--~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~--~~~~~~~~L~~lL~s~~~nvr~~~ 287 (526)
T PF01602_consen 212 ILRLLRRYAPMEPE--DADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE--LLQKAINPLIKLLSSSDPNVRYIA 287 (526)
T ss_dssp HHHHHTTSTSSSHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH--HHHHHHHHHHHHHTSSSHHHHHHH
T ss_pred HHHHHHhcccCChh--hhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH--HHHhhHHHHHHHhhcccchhehhH
Confidence 99998765443332 22 3588999999999999999999999987655433 223456677888889999999999
Q ss_pred HHHHHHHHHHHhhhccCCCcchhccccchHHHhhhhccCCCCchhHHHHhhccCcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 000321 393 MERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEM 472 (1670)
Q Consensus 393 m~~La~LY~~~~~~~~~~~~~~~~~~wIPs~IL~~~Y~nD~~~~lVE~vL~e~LlP~~~~~~~R~~~ll~l~~~LD~~~~ 472 (1670)
+..|..+-..+. ..+. -+..++.++- ...+..-|...+--++.-.++...
T Consensus 288 L~~L~~l~~~~~----------~~v~-~~~~~~~~l~-------------------~~~d~~Ir~~~l~lL~~l~~~~n~ 337 (526)
T PF01602_consen 288 LDSLSQLAQSNP----------PAVF-NQSLILFFLL-------------------YDDDPSIRKKALDLLYKLANESNV 337 (526)
T ss_dssp HHHHHHHCCHCH----------HHHG-THHHHHHHHH-------------------CSSSHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHhhcccc----------hhhh-hhhhhhheec-------------------CCCChhHHHHHHHHHhhcccccch
Confidence 988877765431 1111 1222222211 112333455555555555566544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCc
Q 000321 473 KALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEP 525 (1670)
Q Consensus 473 kal~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kl~~~I~~Ls~~FPDp 525 (1670)
+. +-..+.+|+. +..+++++..+...|..++..||..
T Consensus 338 ~~----------Il~eL~~~l~------~~~d~~~~~~~i~~I~~la~~~~~~ 374 (526)
T PF01602_consen 338 KE----------ILDELLKYLS------ELSDPDFRRELIKAIGDLAEKFPPD 374 (526)
T ss_dssp HH----------HHHHHHHHHH------HC--HHHHHHHHHHHHHHHHHHGSS
T ss_pred hh----------HHHHHHHHHH------hccchhhhhhHHHHHHHHHhccCch
Confidence 32 2233444441 1234567888888888888877553
No 12
>PRK09687 putative lyase; Provisional
Probab=97.42 E-value=0.00093 Score=78.98 Aligned_cols=145 Identities=17% Similarity=0.136 Sum_probs=103.2
Q ss_pred HHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhh-hcCCChhHHHHHH
Q 000321 238 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKR-LTDRIVAVRMSVL 316 (1670)
Q Consensus 238 h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R-~~D~s~~VR~~~v 316 (1670)
+..+..|..+-.. .|++.+..-+.+++..+|..|+..||+| +.+... -+.++.....- .+|.++.||...+
T Consensus 41 ~~A~~aL~~~~~~---~~~~~l~~ll~~~d~~vR~~A~~aLg~l-g~~~~~----~~~a~~~L~~l~~~D~d~~VR~~A~ 112 (280)
T PRK09687 41 ISSIRVLQLRGGQ---DVFRLAIELCSSKNPIERDIGADILSQL-GMAKRC----QDNVFNILNNLALEDKSACVRASAI 112 (280)
T ss_pred HHHHHHHHhcCcc---hHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCccc----hHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 4455666655432 2333344446789999999999999985 433221 12333333333 5899999999999
Q ss_pred HHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHH
Q 000321 317 EHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERL 396 (1670)
Q Consensus 317 ~~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~Vs~elL~~laeR~RDKK~~VR~eAm~~L 396 (1670)
...+++=...+. ....++..+...+.|.+..||.+|+.+++.+. +.+.+..|...+.|..+.||..|+.+|
T Consensus 113 ~aLG~~~~~~~~--~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~-------~~~ai~~L~~~L~d~~~~VR~~A~~aL 183 (280)
T PRK09687 113 NATGHRCKKNPL--YSPKIVEQSQITAFDKSTNVRFAVAFALSVIN-------DEAAIPLLINLLKDPNGDVRNWAAFAL 183 (280)
T ss_pred HHHhcccccccc--cchHHHHHHHHHhhCCCHHHHHHHHHHHhccC-------CHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 999875222211 12367788889999999999999999886542 345678888999999999999999999
Q ss_pred HHH
Q 000321 397 ADI 399 (1670)
Q Consensus 397 a~L 399 (1670)
|.+
T Consensus 184 g~~ 186 (280)
T PRK09687 184 NSN 186 (280)
T ss_pred hcC
Confidence 998
No 13
>PRK09687 putative lyase; Provisional
Probab=97.36 E-value=0.0015 Score=77.35 Aligned_cols=129 Identities=16% Similarity=0.069 Sum_probs=99.5
Q ss_pred hhhhhhccc-ccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCCh
Q 000321 254 GVVPYLTGE-LLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADA 332 (1670)
Q Consensus 254 ~ViP~Le~E-L~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~ 332 (1670)
.++|.|..- +...+..+|..|+..||.+-.. +. ..-+.+...+..-..|.++.||...+...+.+ . .
T Consensus 90 ~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~-~~---~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----~----~ 157 (280)
T PRK09687 90 NVFNILNNLALEDKSACVRASAINATGHRCKK-NP---LYSPKIVEQSQITAFDKSTNVRFAVAFALSVI----N----D 157 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhccccc-cc---ccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc----C----C
Confidence 455666655 4567899999999999998432 21 11234556677778899999999999888642 1 1
Q ss_pred HHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000321 333 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 399 (1670)
Q Consensus 333 ~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~Vs~elL~~laeR~RDKK~~VR~eAm~~La~L 399 (1670)
.+.++.|...|.|+|..||..|+.+++.+.. -+...+..|...+.|....||..|+.+||++
T Consensus 158 ~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~-----~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 EAAIPLLINLLKDPNGDVRNWAAFALNSNKY-----DNPDIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 3688999999999999999999999987622 2446677788889999999999999999984
No 14
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.17 Score=65.48 Aligned_cols=390 Identities=14% Similarity=0.162 Sum_probs=196.3
Q ss_pred ccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhh
Q 000321 263 LLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDR 342 (1670)
Q Consensus 263 L~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~eii~~L~~r 342 (1670)
|.+.....-+.|.+-+=-|++. |-+... +|-+-.+-..-++++|+..+-=+.-+.-..+|+... -=+..+++-
T Consensus 44 LdSnkd~~KleAmKRIia~iA~-G~dvS~----~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL--LSIntfQk~ 116 (968)
T KOG1060|consen 44 LDSNKDSLKLEAMKRIIALIAK-GKDVSL----LFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL--LSINTFQKA 116 (968)
T ss_pred HhccccHHHHHHHHHHHHHHhc-CCcHHH----HHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee--eeHHHHHhh
Confidence 5567777777777665555554 434444 455555566667888887765554444455665432 236899999
Q ss_pred hCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCcchhccccchH
Q 000321 343 LLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPG 422 (1670)
Q Consensus 343 L~D~DEkVR~aaVkai~~la~~~l~~Vs~elL~~laeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~~wIPs 422 (1670)
|.|+...+|.-|..++..+-... |-.=+|-++.+-.+|-.+-||+.|..++-+||..-... ..++..+=.
T Consensus 117 L~DpN~LiRasALRvlSsIRvp~---IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~-------k~qL~e~I~ 186 (968)
T KOG1060|consen 117 LKDPNQLIRASALRVLSSIRVPM---IAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQ-------KDQLEEVIK 186 (968)
T ss_pred hcCCcHHHHHHHHHHHHhcchhh---HHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhh-------HHHHHHHHH
Confidence 99999999999888876543322 33335778999999999999999999999999952110 111211111
Q ss_pred HHhhhhccCCCCchhHHHHh--hccCcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000321 423 KILRCLYDKDFGSDTIESVL--CGSLFPTGFSV-KDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMH 499 (1670)
Q Consensus 423 ~IL~~~Y~nD~~~~lVE~vL--~e~LlP~~~~~-~~R~~~ll~l~~~LD~~~~kal~~il~~k~~l~~~~~~~l~l~~~~ 499 (1670)
++| .++++ ..|-.++ |+.+-|-.++- ..--+++++++-.+|+.+.-.+
T Consensus 187 ~LL---aD~sp--lVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvl------------------------ 237 (968)
T KOG1060|consen 187 KLL---ADRSP--LVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVL------------------------ 237 (968)
T ss_pred HHh---cCCCC--cchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHH------------------------
Confidence 222 12221 1111111 11111111100 0112344444444444332222
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHH-HhhccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCc-h
Q 000321 500 QDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLIL-DQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHR-L 577 (1670)
Q Consensus 500 ~~~d~~ei~~kl~~~I~~Ls~~FPDp~Ka~~~L~kf-~kLnD~RiykLLk~~id~~td~~t~~~a~~ELlkkL~~~~~-l 577 (1670)
|...++|--..||+|+.....++.= ..-|....|.-+++=+..+.|.+-+.++.+=|+. +.++ +
T Consensus 238 -----------I~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~---S~n~sV 303 (968)
T KOG1060|consen 238 -----------INMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQ---SRNPSV 303 (968)
T ss_pred -----------HHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHh---cCCcHH
Confidence 2222344445666665543333311 1111111222222222224555444433333332 2222 2
Q ss_pred HHHHHHHHHhhhccccChhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhcccc-chHH
Q 000321 578 YDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEI-IKEG 656 (1670)
Q Consensus 578 ~e~l~~Ll~R~S~li~Nks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v~~Li~lL~~~~~~-~~~~ 656 (1670)
.-.+-.++|-.+|.-=+.--++.|+..+...... ....+.-+..||...|++|..|.+..- +...++. +.-.
T Consensus 304 VmA~aql~y~lAP~~~~~~i~kaLvrLLrs~~~v-----qyvvL~nIa~~s~~~~~lF~P~lKsFf--v~ssDp~~vk~l 376 (968)
T KOG1060|consen 304 VMAVAQLFYHLAPKNQVTKIAKALVRLLRSNREV-----QYVVLQNIATISIKRPTLFEPHLKSFF--VRSSDPTQVKIL 376 (968)
T ss_pred HHHHHhHHHhhCCHHHHHHHHHHHHHHHhcCCcc-----hhhhHHHHHHHHhcchhhhhhhhhceE--eecCCHHHHHHH
Confidence 2223335555555544444466677655332111 122233445577888999999976553 3334443 3334
Q ss_pred HHHHHHHhhcchhhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhh
Q 000321 657 ILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLE 726 (1670)
Q Consensus 657 aLkiLak~~k~~~e~~~~~~s~l~~~L~~lal~Gtp~qAKyAvr~Laa~~~~~~~~~~~~L~~~L~~~L~ 726 (1670)
=|++|+..... . .-+.+..-|+.|.......-|--||++|+.....-+.+. .-.++.|+..|.
T Consensus 377 KleiLs~La~e---s---ni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~-~tCL~gLv~Lls 439 (968)
T KOG1060|consen 377 KLEILSNLANE---S---NISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVT-DTCLNGLVQLLS 439 (968)
T ss_pred HHHHHHHHhhh---c---cHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchh-hHHHHHHHHHHh
Confidence 46666655421 0 011233445556555555666677787775544322211 123455555554
No 15
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.43 Score=62.18 Aligned_cols=351 Identities=17% Similarity=0.157 Sum_probs=201.3
Q ss_pred hhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCCh
Q 000321 253 SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADA 332 (1670)
Q Consensus 253 ~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~ 332 (1670)
.-+.-.|...|++.+--+==+|.-+||.|++. .+++ ++.-.--.-.+-.++-||...+-|+-.++..-|+. .
T Consensus 106 lLltNslknDL~s~nq~vVglAL~alg~i~s~---Emar---dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l--~ 177 (866)
T KOG1062|consen 106 LLLTNSLKNDLNSSNQYVVGLALCALGNICSP---EMAR---DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL--V 177 (866)
T ss_pred HHHHHHHHhhccCCCeeehHHHHHHhhccCCH---HHhH---HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH--H
Confidence 33445778899999988889999999999975 2333 33332223333378999999999999999988863 4
Q ss_pred HHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCc
Q 000321 333 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSI 412 (1670)
Q Consensus 333 ~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~Vs~elL~~laeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~~~~ 412 (1670)
+-++.....+|.|-+..|=.++|.-+.++...+++ .+. +-|| ....|-.+-+.... +..
T Consensus 178 e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~-----~l~----~fr~--------l~~~lV~iLk~l~~----~~y 236 (866)
T KOG1062|consen 178 EHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPD-----ALS----YFRD--------LVPSLVKILKQLTN----SGY 236 (866)
T ss_pred HHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHH-----HHH----HHHH--------HHHHHHHHHHHHhc----CCC
Confidence 46678899999999999999988888776655432 221 1111 12222222232211 111
Q ss_pred ch-hccccchHHHhhhhccCCCCchhHHHHhhccCcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 000321 413 NQ-NEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQR 491 (1670)
Q Consensus 413 ~~-~~~~wIPs~IL~~~Y~nD~~~~lVE~vL~e~LlP~~~~~~~R~~~ll~l~~~LD~~~~kal~~il~~k~~l~~~~~~ 491 (1670)
.. -.+..||.=.|++ |.-|++.+++.-|+.+...+..+|.+..+-
T Consensus 237 speydv~gi~dPFLQi----------------------------~iLrlLriLGq~d~daSd~M~DiLaqvatn------ 282 (866)
T KOG1062|consen 237 SPEYDVHGISDPFLQI----------------------------RILRLLRILGQNDADASDLMNDILAQVATN------ 282 (866)
T ss_pred CCccCccCCCchHHHH----------------------------HHHHHHHHhcCCCccHHHHHHHHHHHHHhc------
Confidence 11 1244444444432 566778888888888887777777654330
Q ss_pred HHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCch---HHHHHHHHHHhhccHHHHH-HHHHHhcC-CCCHHHHHHHHHH
Q 000321 492 YLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPA---KAEENFLILDQLKDANVWK-ILMNLLDS-NTSFDQAFTGRDD 566 (1670)
Q Consensus 492 ~l~l~~~~~~~d~~ei~~kl~~~I~~Ls~~FPDp~---Ka~~~L~kf~kLnD~Riyk-LLk~~id~-~td~~t~~~a~~E 566 (1670)
+ +...-.-.+-|-.|++-|....|++. .|...|-+|-.=.|.++.+ .|..++.. +.|-.-+..=+.-
T Consensus 283 ----t----dsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~t 354 (866)
T KOG1062|consen 283 ----T----DSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRST 354 (866)
T ss_pred ----c----cccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHH
Confidence 0 11101112234445555555555544 3555555665445665543 23333222 2333333333555
Q ss_pred HHHHhcCCCc-h-HHHHHHHHHhhhccccChhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccH-HHHH
Q 000321 567 LLKILGAKHR-L-YDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE-EELV 643 (1670)
Q Consensus 567 LlkkL~~~~~-l-~e~l~~Ll~R~S~li~Nks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v-~~Li 643 (1670)
++-.|.++-+ + ..++. .++.++|.+||..++++ ||.++-.. ++-|++.+ ..++
T Consensus 355 IleCL~DpD~SIkrralE-----Ls~~lvn~~Nv~~mv~e------------------Ll~fL~~~-d~~~k~~~as~I~ 410 (866)
T KOG1062|consen 355 ILECLKDPDVSIKRRALE-----LSYALVNESNVRVMVKE------------------LLEFLESS-DEDFKADIASKIA 410 (866)
T ss_pred HHHHhcCCcHHHHHHHHH-----HHHHHhccccHHHHHHH------------------HHHHHHhc-cHHHHHHHHHHHH
Confidence 5555655421 1 11222 35667888888877764 44444444 45555543 3333
Q ss_pred HHHhh---ccccchHHHHHHHHHhhcchhhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhh
Q 000321 644 NLLKE---ENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAI 705 (1670)
Q Consensus 644 ~lL~~---~~~~~~~~aLkiLak~~k~~~e~~~~~~s~l~~~L~~lal~Gtp~qAKyAvr~Laa~ 705 (1670)
.+.+. ++-.-...++++|..+|.++++. ...-|.++.-+|.+..=+|+++-|.+.
T Consensus 411 ~laEkfaP~k~W~idtml~Vl~~aG~~V~~d-------v~~nll~LIa~~~~e~~~y~~~rLy~a 468 (866)
T KOG1062|consen 411 ELAEKFAPDKRWHIDTMLKVLKTAGDFVNDD-------VVNNLLRLIANAFQELHEYAVLRLYLA 468 (866)
T ss_pred HHHHhcCCcchhHHHHHHHHHHhcccccchh-------hHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 33333 22234566888888888776554 334455666777777777888877643
No 16
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.10 E-value=0.047 Score=74.59 Aligned_cols=119 Identities=18% Similarity=0.120 Sum_probs=78.5
Q ss_pred hhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHH
Q 000321 256 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQI 335 (1670)
Q Consensus 256 iP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei 335 (1670)
+|.|..-|..++..+|..|+..||.+-..+ .+....+.-..|.++.||...+++...+ +. .+.
T Consensus 777 ~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l----~~----~~a 839 (897)
T PRK13800 777 GDAVRALTGDPDPLVRAAALAALAELGCPP---------DDVAAATAALRASAWQVRQGAARALAGA----AA----DVA 839 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhcCCChHHHHHHHHHHHhc----cc----cch
Confidence 344445556677888888888888773321 1112233445677788888888877541 11 245
Q ss_pred HHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHH
Q 000321 336 LTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLA 397 (1670)
Q Consensus 336 i~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~Vs~elL~~laeR~RDKK~~VR~eAm~~La 397 (1670)
+..|...|.|++..||.+|+.++..+ ..+......|...+.|....||++|...|.
T Consensus 840 ~~~L~~~L~D~~~~VR~~A~~aL~~~------~~~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 840 VPALVEALTDPHLDVRKAAVLALTRW------PGDPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcc------CCCHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 67777788888888888877777664 224455666677778888888888888775
No 17
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.97 E-value=2.3 Score=55.12 Aligned_cols=125 Identities=23% Similarity=0.308 Sum_probs=92.0
Q ss_pred cccCCChHHHHHHHHHHHHhhcCCCCCc-hhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHH
Q 000321 262 ELLTDQLDTRLKAVGLVGDLFAVPGSAN-NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALC 340 (1670)
Q Consensus 262 EL~sed~~~Rl~At~llG~mfs~~~~~~-~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~eii~~L~ 340 (1670)
-+.+.+-.+|-...+++..+....+ .. -.-|.-+-...+.|..|+.|.||++.|.+... +.-.|. ++.-.+...|.
T Consensus 93 g~Eskdk~VRfrvlqila~l~d~~~-eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsr-lQ~d~~-dee~~v~n~l~ 169 (892)
T KOG2025|consen 93 GTESKDKKVRFRVLQILALLSDENA-EIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSR-LQGDPK-DEECPVVNLLK 169 (892)
T ss_pred cccCcchhHHHHHHHHHHHHhcccc-ccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHH-HhcCCC-CCcccHHHHHH
Confidence 3457899999999999999887432 11 12344455588999999999999999999876 332332 23345666666
Q ss_pred hhh-CCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 000321 341 DRL-LDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLAD 398 (1670)
Q Consensus 341 ~rL-~D~DEkVR~aaVkai~~la~~~l~~Vs~elL~~laeR~RDKK~~VR~eAm~~La~ 398 (1670)
.-+ +||.+.||.+|.-.| .++..++-.+.+|+||=+..+|+-+-..+..
T Consensus 170 ~liqnDpS~EVRRaaLsnI---------~vdnsTlp~IveRarDV~~anRrlvY~r~lp 219 (892)
T KOG2025|consen 170 DLIQNDPSDEVRRAALSNI---------SVDNSTLPCIVERARDVSGANRRLVYERCLP 219 (892)
T ss_pred HHHhcCCcHHHHHHHHHhh---------ccCcccchhHHHHhhhhhHHHHHHHHHHhhh
Confidence 554 899999999976666 4566677788999999999999976554443
No 18
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=96.97 E-value=0.0015 Score=58.45 Aligned_cols=44 Identities=20% Similarity=0.392 Sum_probs=39.9
Q ss_pred cccceEEEecCCCCceEEEEEEEecCCCCeeEEEccC-CcceeeecC
Q 000321 1371 LIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDD-EDVEVLRLD 1416 (1670)
Q Consensus 1371 lvG~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdD-Gd~E~l~L~ 1416 (1670)
-+|..|.+.| .|..||.|+|+.+++. +...|.|.| |..+++...
T Consensus 4 ~~G~~~~a~~-~d~~wyra~I~~~~~~-~~~~V~f~D~G~~~~v~~~ 48 (57)
T smart00333 4 KVGDKVAARW-EDGEWYRARIIKVDGE-QLYEVFFIDYGNEEVVPPS 48 (57)
T ss_pred CCCCEEEEEe-CCCCEEEEEEEEECCC-CEEEEEEECCCccEEEeHH
Confidence 4899999999 9999999999999988 889999988 999988743
No 19
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.89 E-value=0.056 Score=59.83 Aligned_cols=94 Identities=15% Similarity=0.161 Sum_probs=84.4
Q ss_pred ChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChh
Q 000321 308 IVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVL 387 (1670)
Q Consensus 308 s~~VR~~~v~~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~Vs~elL~~laeR~RDKK~~ 387 (1670)
.|.||.-++-..+++...+|. .+...++.+..+|.|+++.||..|+.++..+....+-.+...++..+...+.|..+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~ 78 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPE 78 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHH
Confidence 478999999999999998885 345678899999999999999999999999998888888888878888899999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 000321 388 VKRYTMERLADIFRGC 403 (1670)
Q Consensus 388 VR~eAm~~La~LY~~~ 403 (1670)
||..|...+..+....
T Consensus 79 Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 79 IRSLARSFFSELLKKR 94 (178)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998874
No 20
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=96.76 E-value=0.0028 Score=54.71 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=38.5
Q ss_pred cceEEEecCCCCceEEEEEEEecCCCCeeEEEccC-CcceeeecC
Q 000321 1373 GYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDD-EDVEVLRLD 1416 (1670)
Q Consensus 1373 G~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdD-Gd~E~l~L~ 1416 (1670)
|..|-+.|++|..||.|+|...++ .+.-.|.|.| |..|.+.+.
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~-~~~~~V~f~DyG~~~~v~~~ 44 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILS-DGKVEVFFVDYGNTEVVPLS 44 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECC-CCcEEEEEEcCCCcEEEeHH
Confidence 678999999999999999999998 7778999987 999988754
No 21
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=96.72 E-value=0.0026 Score=57.95 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=33.6
Q ss_pred cccceEEEecCCCCceEEEEEEEecCCCCeeEEEccC
Q 000321 1371 LIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDD 1407 (1670)
Q Consensus 1371 lvG~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdD 1407 (1670)
-+|..|.|||+.+..||.|+|+.+++ .+++.|.|++
T Consensus 4 ~~G~~Ve~~~~~~~~W~~a~V~~~~~-~~~~~V~~~~ 39 (61)
T smart00743 4 KKGDRVEVFSKEEDSWWEAVVTKVLG-DGKYLVRYLT 39 (61)
T ss_pred CCCCEEEEEECCCCEEEEEEEEEECC-CCEEEEEECC
Confidence 48999999999999999999999998 6789999987
No 22
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.70 E-value=4.9 Score=54.92 Aligned_cols=440 Identities=18% Similarity=0.188 Sum_probs=221.8
Q ss_pred HHHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCC--CCCchhhcHHHHHHHHhhhcCCChhHHHH
Q 000321 237 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP--GSANNEQFHSVFSEFLKRLTDRIVAVRMS 314 (1670)
Q Consensus 237 ~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~--~~~~~~~y~~~w~~fL~R~~D~s~~VR~~ 314 (1670)
.-..+.+|-..+|.++..=+..|-.-|..+.-..|-..++.+|.|-..- +.+.. .
T Consensus 295 v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~-----------------------~ 351 (1251)
T KOG0414|consen 295 VGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELRDEELE-----------------------E 351 (1251)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhh-----------------------H
Confidence 4568899999999999998888888899999999999999999987642 11111 1
Q ss_pred HHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCH----HHHHHHHHhhccCChhHHH
Q 000321 315 VLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV----ETVKLVAERLRDKSVLVKR 390 (1670)
Q Consensus 315 ~v~~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~Vs~----elL~~laeR~RDKK~~VR~ 390 (1670)
+.+... .++++.|.+|+.|.-.-||..|.+++..+-. .+.+|. +++..++.|+-||..-||+
T Consensus 352 ~sk~~r------------~~~le~l~erl~Dvsa~vRskVLqv~~~l~~--~~s~p~~~~~eV~~la~grl~DkSslVRk 417 (1251)
T KOG0414|consen 352 MSKSLR------------DELLELLRERLLDVSAYVRSKVLQVFRRLFQ--QHSIPLGSRTEVLELAIGRLEDKSSLVRK 417 (1251)
T ss_pred HHHHHH------------HHHHHHHHHHhhcccHHHHHHHHHHHHHHHH--ccCCCccHHHHHHHHHhcccccccHHHHH
Confidence 111111 1355555666666666666666665543322 222332 4566667777777777777
Q ss_pred HHHHHHHHHHHHH------------------hhhccC--CCcchhccccchHHHhhhhccCCCCchhHHHHhhccCcCCC
Q 000321 391 YTMERLADIFRGC------------------CLRNFN--GSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTG 450 (1670)
Q Consensus 391 eAm~~La~LY~~~------------------~~~~~~--~~~~~~~~~wIPs~IL~~~Y~nD~~~~lVE~vL~e~LlP~~ 450 (1670)
.||..+..+-..+ ....+. .+...-.=..+++--.. -|..-.. .++..=+.+--|..
T Consensus 418 ~Ai~Ll~~~L~~~Pfs~~~~~~~~~~~~E~~~~~~e~~~e~t~~l~~e~~~~~~s~-n~~~vi~--~~~~~~~~~~~q~~ 494 (1251)
T KOG0414|consen 418 NAIQLLSSLLDRHPFSSELRSDDLRAKLEKELQKLEEELESTEHLEEEEMTSNRSE-NVKGVIE--DAEKDSTTEKNQLE 494 (1251)
T ss_pred HHHHHHHHHHhcCCchhhhcchhhhhhHHHHHHhhhhhcccccccchhhccchhhh-hccccee--echhhhhhhccccc
Confidence 7777777665532 111110 00000000000000000 0000000 00000000001110
Q ss_pred CCHHHH-HH-HHHHHHhcCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcCCCcHHHHHHHHHHHHHHHhhcC
Q 000321 451 FSVKDR-VR-HWVRIFSGFDRI----EMKALEKILEQKQRLQQEMQRYLSLR-QMHQDGDAPEIQKKILFCFRVMSRSFA 523 (1670)
Q Consensus 451 ~~~~~R-~~-~ll~l~~~LD~~----~~kal~~il~~k~~l~~~~~~~l~l~-~~~~~~d~~ei~~kl~~~I~~Ls~~FP 523 (1670)
.....- .. .+..-....+.. ..+++.+++...-++...|.+-+... +.--.+...+|+..|... .++..|
T Consensus 495 ss~~~~~e~~~~~~~~~s~~~~~~i~q~~~~vq~l~d~~sf~~~ms~~~~ii~~ll~s~t~teV~E~Idfl--~~c~~F- 571 (1251)
T KOG0414|consen 495 SSDNKQEEHCLLENEVESVPAENEIMQLKALVQFLEDAISFSDEMSEAIPIISQLLFSKTTTEVKEAIDFL--VRCKQF- 571 (1251)
T ss_pred cccccchhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH--HHHHHh-
Confidence 000000 00 000000001110 11233333333333344444433331 112234556677766543 334555
Q ss_pred CchHHHHHHHHHHhh---ccHHHHHHHHHH-------hcCCCCHHHHHHHHHHHHHHhcC-----CCchHHHHHHHHHhh
Q 000321 524 EPAKAEENFLILDQL---KDANVWKILMNL-------LDSNTSFDQAFTGRDDLLKILGA-----KHRLYDFLSTLSMKC 588 (1670)
Q Consensus 524 Dp~Ka~~~L~kf~kL---nD~RiykLLk~~-------id~~td~~t~~~a~~ELlkkL~~-----~~~l~e~l~~Ll~R~ 588 (1670)
+..-|+.++++.-.| +|..++-++-.| .+++..-.+.....+-|++.+-+ .+++-+.+..|+
T Consensus 572 ~I~gae~~irkMl~LVWskd~~i~e~v~~ayk~l~~~~~~n~~~~e~~~ia~NL~~l~~~~s~~d~~slE~vl~~lv--- 648 (1251)
T KOG0414|consen 572 GIDGAEFGIRKMLPLVWSKDKEIREAVENAYKQLYFRPDGNSKASEASSIAQNLSKLLIDASIGDLTSLEEVLCELV--- 648 (1251)
T ss_pred CCCcHHHHHHHHhhhhhCCCccHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHhcccccchhhHHHHHHHHH---
Confidence 455667777766553 666666665555 33444444443333344444322 223333333333
Q ss_pred hccccChhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccccchHHHHHHHHHhhc-c
Q 000321 589 SYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGG-T 667 (1670)
Q Consensus 589 S~li~Nks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v~~Li~lL~~~~~~~~~~aLkiLak~~k-~ 667 (1670)
+--.++...|..|.......+.+........++.+|-++|...|++-..+.+.|+++=.. .+.....+|..++.++- .
T Consensus 649 ~~~~Id~~Vi~~Lw~~ftlq~~~~~~~q~~~sl~iL~M~s~s~~~Iv~~~~~~lv~iglg-~p~l~~~~L~~~s~i~~~r 727 (1251)
T KOG0414|consen 649 ARGYIDAAVINKLWEIFTLQKKGTTNEQSRGSLIILGMASRSKPSIVLANLDLLVQIGLG-EPRLAVDVLARYSNIVDPR 727 (1251)
T ss_pred hCCCccHHHHHHHHHHHHHHhccCchhhhccceeehhhhhccChhhhhhhhHHHHHhccC-cHHHHHHHHHHHHHhhccc
Confidence 345678888888988764433333222223467899999999999999998887765333 35555667777765541 1
Q ss_pred hh----hh--h-hcccchHHHHHHHHhhcCCh-------HHHHHHHHHHHhhcCCCccchHHHHHHHHHHh
Q 000321 668 IR----EQ--L-AATSSSVDLLLERLCLEGSR-------RQAKYAVHALAAITKDDGLKSLSVLYKRLVDM 724 (1670)
Q Consensus 668 ~~----e~--~-~~~~s~l~~~L~~lal~Gtp-------~qAKyAvr~Laa~~~~~~~~~~~~L~~~L~~~ 724 (1670)
+. .. + .+....+...|+.+-..|-+ .-|-.|+.+|..+...++.. ...|+..+.++
T Consensus 728 ~~~~~~~r~~f~~~~~~~L~k~L~~l~~~~~~~~d~~~~~~~e~ais~Iy~is~~Pe~l-a~~li~~~~~~ 797 (1251)
T KOG0414|consen 728 KLEDAYSRPKFNLEQEEVLFKILEKLLFFEFMKADDDWFGVAEVAISAIYSISMLPEVL-ATQLIRKLLKQ 797 (1251)
T ss_pred ccchhhccccccCchHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHhcChHHH-HHHHHHHHHHH
Confidence 11 00 1 12234677777777666421 55677888888787765432 22345544444
No 23
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=96.64 E-value=2.4 Score=61.62 Aligned_cols=371 Identities=16% Similarity=0.119 Sum_probs=181.0
Q ss_pred CChhHHHHHHHHhHHHHhcCCCCC---ChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcC----CCCHHHHHHHHH
Q 000321 307 RIVAVRMSVLEHVKSCLLTDPSRA---DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN----SIPVETVKLVAE 379 (1670)
Q Consensus 307 ~s~~VR~~~v~~~~~iL~~~p~~~---~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~----~Vs~elL~~lae 379 (1670)
...+++...+.+..++...+.+.- .....++.|...|...++.+|..++.+++-++..+-. .+....+-.|.+
T Consensus 416 ~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~ 495 (2102)
T PLN03200 416 ATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQ 495 (2102)
T ss_pred CCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH
Confidence 447899999888877554332210 0012456888889889999999999999888753321 123345667788
Q ss_pred hhccCChhHHHHHHHHHHHHHHHHhhhccCCCcchhccccchHHHhhhhccCCCCchhHHHHhhccCcCCCCCHHHHHHH
Q 000321 380 RLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRH 459 (1670)
Q Consensus 380 R~RDKK~~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~~wIPs~IL~~~Y~nD~~~~lVE~vL~e~LlP~~~~~~~R~~~ 459 (1670)
.++..+..+|++|+..|++|=... .+.......-+-||. |++++-..+.+. .+ .=+..
T Consensus 496 LL~s~~~~iqeeAawAL~NLa~~~----~qir~iV~~aGAIpp-LV~LL~sgd~~~--q~---------------~Aa~A 553 (2102)
T PLN03200 496 LLETGSQKAKEDSATVLWNLCCHS----EDIRACVESAGAVPA-LLWLLKNGGPKG--QE---------------IAAKT 553 (2102)
T ss_pred HHcCCCHHHHHHHHHHHHHHhCCc----HHHHHHHHHCCCHHH-HHHHHhCCCHHH--HH---------------HHHHH
Confidence 888889999999999998874310 000011122355664 555543222210 00 01112
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhc
Q 000321 460 WVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLK 539 (1670)
Q Consensus 460 ll~l~~~LD~~~~kal~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kl~~~I~~Ls~~FPDp~Ka~~~L~kf~kLn 539 (1670)
+..+..+-|.... ..++++.. .+.+.++.....++..|...-.... ...-. .-
T Consensus 554 L~nLi~~~d~~~I-----------------~~Lv~LLl----sdd~~~~~~aL~vLgnIlsl~~~~d-----~~~~g-~~ 606 (2102)
T PLN03200 554 LTKLVRTADAATI-----------------SQLTALLL----GDLPESKVHVLDVLGHVLSVASLED-----LVREG-SA 606 (2102)
T ss_pred HHHHHhccchhHH-----------------HHHHHHhc----CCChhHHHHHHHHHHHHHhhcchhH-----HHHHh-hh
Confidence 2223222222211 11222210 1222332222222222211110000 00000 00
Q ss_pred cHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhc-CCCchHHHHHHHHHhhhccccChhHHHHHHHHHHhhcccchhhh
Q 000321 540 DANVWKILMNLLDSNT--SFDQAFTGRDDLLKILG-AKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQF 616 (1670)
Q Consensus 540 D~RiykLLk~~id~~t--d~~t~~~a~~ELlkkL~-~~~~l~e~l~~Ll~R~S~li~Nks~V~~LL~~v~~~~~~~~~~~ 616 (1670)
+......|-.++...+ .++.+. .++-.+- ... +.. ..++....|+-|+..+.... ....
T Consensus 607 ~~ggL~~Lv~LL~sgs~~ikk~Aa----~iLsnL~a~~~---d~~--------~avv~agaIpPLV~LLss~~---~~v~ 668 (2102)
T PLN03200 607 ANDALRTLIQLLSSSKEETQEKAA----SVLADIFSSRQ---DLC--------ESLATDEIINPCIKLLTNNT---EAVA 668 (2102)
T ss_pred ccccHHHHHHHHcCCCHHHHHHHH----HHHHHHhcCCh---HHH--------HHHHHcCCHHHHHHHHhcCC---hHHH
Confidence 0011111112221111 111111 1111111 111 000 11344456777777665321 1112
Q ss_pred HHHHHHHHHHHHhhCCc--Cc---cccHHHHHHHHhhccccchHHHHHHHHHhhcchhhhhhcccchHHHHHHHHhhcCC
Q 000321 617 MQSCMDILGILARFSPL--LL---GGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGS 691 (1670)
Q Consensus 617 ~~~a~eLL~~IS~~~P~--lF---k~~v~~Li~lL~~~~~~~~~~aLkiLak~~k~~~e~~~~~~s~l~~~L~~lal~Gt 691 (1670)
.+.|..|....+...+. ++ .+.+..|+++|...+..+++.++.+|+.+...-............+.|.++-.+|+
T Consensus 669 keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~ 748 (2102)
T PLN03200 669 TQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGT 748 (2102)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCC
Confidence 33444444444333322 12 34589999999998878889999999987643211111123456888999999999
Q ss_pred hHHHHHHHHHHHhhcCCCccch-H------HHHHHHHHHhhhhcC--CCch--HHHHHHHHHhh
Q 000321 692 RRQAKYAVHALAAITKDDGLKS-L------SVLYKRLVDMLEEKT--HLPA--VLQSLGCIAQT 744 (1670)
Q Consensus 692 p~qAKyAvr~Laa~~~~~~~~~-~------~~L~~~L~~~L~~~~--~l~t--~L~sL~~Iaq~ 744 (1670)
++.=++|+.+|..++....... + .-.+..|++.|...+ +..+ .|..|+-+++.
T Consensus 749 ~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~ 812 (2102)
T PLN03200 749 LEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLART 812 (2102)
T ss_pred hHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhh
Confidence 9999999999987775432111 1 112345555565222 3332 56666666664
No 24
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.63 E-value=0.012 Score=56.57 Aligned_cols=83 Identities=23% Similarity=0.304 Sum_probs=66.3
Q ss_pred HHhhh-cCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHH
Q 000321 300 FLKRL-TDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVA 378 (1670)
Q Consensus 300 fL~R~-~D~s~~VR~~~v~~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~Vs~elL~~la 378 (1670)
++... +|.++.||...+...+.+ ...++++.|...+.|+|..||.+|+.+++.+. +.+.+..|.
T Consensus 4 L~~~l~~~~~~~vr~~a~~~L~~~--------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-------~~~~~~~L~ 68 (88)
T PF13646_consen 4 LLQLLQNDPDPQVRAEAARALGEL--------GDPEAIPALIELLKDEDPMVRRAAARALGRIG-------DPEAIPALI 68 (88)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHCC--------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-------HHHTHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHc--------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------CHHHHHHHH
Confidence 44555 799999999998888731 23578999999999999999999999998764 345677778
Q ss_pred Hhhcc-CChhHHHHHHHHHH
Q 000321 379 ERLRD-KSVLVKRYTMERLA 397 (1670)
Q Consensus 379 eR~RD-KK~~VR~eAm~~La 397 (1670)
+.+.| ....||..|+..||
T Consensus 69 ~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 69 KLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTC-SSHHHHHHHHHHHH
T ss_pred HHHcCCCcHHHHHHHHhhcC
Confidence 87777 45678999999987
No 25
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.60 E-value=2.1 Score=56.96 Aligned_cols=475 Identities=17% Similarity=0.166 Sum_probs=241.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhhcC-CCCCCCCcc--hH-HHHHHHHHhhCchhhhhhhhhhcccccCC--C--
Q 000321 196 TARRLAMNVIEQCAGKLEAGIKQFLVSSMSG-DSRPGHSHI--DY-HEVIYDVYRCSPQILSGVVPYLTGELLTD--Q-- 267 (1670)
Q Consensus 196 ~a~~lA~~v~~~~~dkL~~~I~qyf~~il~~-~~~~~~~~~--~~-h~Li~eL~~~~P~lL~~ViP~Le~EL~se--d-- 267 (1670)
.++.+-..+++...+-+..++-..+..+++. .+.++.+.. .+ --+..-|-.+.|....+-+|-|..-+.+- |
T Consensus 454 ~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~f 533 (1233)
T KOG1824|consen 454 GCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPF 533 (1233)
T ss_pred hHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCch
Confidence 5567777777777766666665444444432 112222222 22 23344455667777777666654433211 1
Q ss_pred hHHHHHHHHHHHHhhcC-----C--CCCchhhcHHHHHHHHhhh--cCCChhHHHHHHHHhHHHHhcCCC--CCChHHHH
Q 000321 268 LDTRLKAVGLVGDLFAV-----P--GSANNEQFHSVFSEFLKRL--TDRIVAVRMSVLEHVKSCLLTDPS--RADAPQIL 336 (1670)
Q Consensus 268 ~~~Rl~At~llG~mfs~-----~--~~~~~~~y~~~w~~fL~R~--~D~s~~VR~~~v~~~~~iL~~~p~--~~~~~eii 336 (1670)
-.+--.|..+.+++... + +.++......+|.+-+.|+ +|.+-+||...+.+.++++.+--+ +.+.+.++
T Consensus 534 yKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L 613 (1233)
T KOG1824|consen 534 YKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTL 613 (1233)
T ss_pred HhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 22222333333333321 1 2445566678888888876 799999999999999998876433 23445677
Q ss_pred HHHHhhhCCChhHHHHHHHHHHHHhhhhhcC----CCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCc
Q 000321 337 TALCDRLLDFDENVRKQVVAVICDVACHALN----SIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSI 412 (1670)
Q Consensus 337 ~~L~~rL~D~DEkVR~aaVkai~~la~~~l~----~Vs~elL~~laeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~~~~ 412 (1670)
..|++||. .|--|+.||+|+|.++...++ .+-.+++..++.=+|--....|.+++..+-+|-..|...+.. ..
T Consensus 614 ~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~-~~ 690 (1233)
T KOG1824|consen 614 PILLERLG--NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPA-EL 690 (1233)
T ss_pred HHHHHHHh--chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH-HH
Confidence 88999986 578899999999999875543 344567778888777666778888877777777766321110 01
Q ss_pred chhccccchHHHhhhhccCCCCchhHHHHhhccCc--CCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHH
Q 000321 413 NQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLF--PTGFSVKDRVRHWVRIFSG-----FDRIEMKALEKILEQKQRL 485 (1670)
Q Consensus 413 ~~~~~~wIPs~IL~~~Y~nD~~~~lVE~vL~e~Ll--P~~~~~~~R~~~ll~l~~~-----LD~~~~kal~~il~~k~~l 485 (1670)
...-+.-||+-|- ..|.+.-..--.+..+++ |...-.+-+-..+-++.+. +-..+..++..++..-..-
T Consensus 691 ~e~vL~el~~Lis----esdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t 766 (1233)
T KOG1824|consen 691 LEAVLVELPPLIS----ESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVIT 766 (1233)
T ss_pred HHHHHHHhhhhhh----HHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhc
Confidence 1112344444332 223221111111111221 1110011111111111111 1121222222221111110
Q ss_pred HHHHHHHHHHHhhhc--------CCCcHHHHHHHHHHHHHHHhhcCCchH--HHHHHHHHH--hhccH-HHHHHHHHH-h
Q 000321 486 QQEMQRYLSLRQMHQ--------DGDAPEIQKKILFCFRVMSRSFAEPAK--AEENFLILD--QLKDA-NVWKILMNL-L 551 (1670)
Q Consensus 486 ~~~~~~~l~l~~~~~--------~~d~~ei~~kl~~~I~~Ls~~FPDp~K--a~~~L~kf~--kLnD~-RiykLLk~~-i 551 (1670)
+..-..|..+....+ ++-....--.|.+|+..|+..+|+-.+ |..-.+-|. +.+|. ++|-+|..= +
T Consensus 767 ~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGEl 846 (1233)
T KOG1824|consen 767 KEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGEL 846 (1233)
T ss_pred CCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhh
Confidence 000011222211111 111122223467888899999996544 333344444 34443 455544321 1
Q ss_pred c------CCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhccccC--hhHHHHHHHHHHhhcccchhhhHHHHHHH
Q 000321 552 D------SNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFN--KEHVKEILLEVAAQKSSANAQFMQSCMDI 623 (1670)
Q Consensus 552 d------~~td~~t~~~a~~ELlkkL~~~~~l~e~l~~Ll~R~S~li~N--ks~V~~LL~~v~~~~~~~~~~~~~~a~eL 623 (1670)
+ +.-.|.+ -++.-++.+ .-|....-.|-...+..+ ...+|.|++.+... ... ++ ---|-|
T Consensus 847 gr~~~~s~~~e~~~------~iieaf~sp--~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sq--pk~-Qy-LLLhSl 914 (1233)
T KOG1824|consen 847 GRRKDLSPQNELKD------TIIEAFNSP--SEDVKSAASYALGSLAVGNLPKYLPFILEQIESQ--PKR-QY-LLLHSL 914 (1233)
T ss_pred ccCCCCCcchhhHH------HHHHHcCCC--hHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcc--hHh-HH-HHHHHH
Confidence 1 1122221 122222222 234444434433334331 23567777765432 111 11 123467
Q ss_pred HHHHHhhCCcCccccHHHHHHHHhhccccchHHHHHHHHHhhcchhhhhhcccchHHHHHHHHhhcCCh
Q 000321 624 LGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSR 692 (1670)
Q Consensus 624 L~~IS~~~P~lFk~~v~~Li~lL~~~~~~~~~~aLkiLak~~k~~~e~~~~~~s~l~~~L~~lal~Gtp 692 (1670)
...|+...+..|+..++.+-.+|..+-+..-+++=-++|.|-|.+- ....+++.+.|+.+-..|.|
T Consensus 915 kevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~---l~epesLlpkL~~~~~S~a~ 980 (1233)
T KOG1824|consen 915 KEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLV---LIEPESLLPKLKLLLRSEAS 980 (1233)
T ss_pred HHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHH---hCChHHHHHHHHHHhcCCCc
Confidence 7789999999999999999999988544334455445555543321 12245789999888777765
No 26
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=3.7 Score=52.20 Aligned_cols=418 Identities=15% Similarity=0.160 Sum_probs=224.2
Q ss_pred HHHHHHHHHh-hhhhHHHHHHHHHHhhcCCCC-CCCCcc-----hHHHHHHHHHhhCchhhhhhhhhhcccccCCChHHH
Q 000321 199 RLAMNVIEQC-AGKLEAGIKQFLVSSMSGDSR-PGHSHI-----DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTR 271 (1670)
Q Consensus 199 ~lA~~v~~~~-~dkL~~~I~qyf~~il~~~~~-~~~~~~-----~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~R 271 (1670)
++.+++++.+ .+++...|.+...+.++..+. ..+.++ -++-|=.+--.+.-.++.+|++. +...|..+|
T Consensus 26 k~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~c----f~D~d~~vR 101 (675)
T KOG0212|consen 26 KLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNC----FSDQDSQVR 101 (675)
T ss_pred HHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHh----ccCccceee
Confidence 3344444333 366777777666666553321 111111 12222222222333445555555 445788999
Q ss_pred HHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHH---HHHhHHHHhcCCCCCChHHHHHHHHhhhCCChh
Q 000321 272 LKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSV---LEHVKSCLLTDPSRADAPQILTALCDRLLDFDE 348 (1670)
Q Consensus 272 l~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~---v~~~~~iL~~~p~~~~~~eii~~L~~rL~D~DE 348 (1670)
--|.+.+-.+-..-..++..-++.+|....+=+.|.+..||-.. -...++|.......-...+++.-|.+|+.+.+.
T Consensus 102 yyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~ 181 (675)
T KOG0212|consen 102 YYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINP 181 (675)
T ss_pred eHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCc
Confidence 99999887776544457788889999999999999999999652 233444444333223356899999999999999
Q ss_pred HHHHHHHHHHHHhhhhh----cCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccC-C-----Ccc-----
Q 000321 349 NVRKQVVAVICDVACHA----LNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFN-G-----SIN----- 413 (1670)
Q Consensus 349 kVR~aaVkai~~la~~~----l~~Vs~elL~~laeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~-~-----~~~----- 413 (1670)
-+|..+|.-+.-+.... +..+ .+++.-|..=+-|-...||..|=+.|+.+-+....+.+. + +..
T Consensus 182 ~tR~flv~Wl~~Lds~P~~~m~~yl-~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ 260 (675)
T KOG0212|consen 182 MTRQFLVSWLYVLDSVPDLEMISYL-PSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQ 260 (675)
T ss_pred hHHHHHHHHHHHHhcCCcHHHHhcc-hHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhcccccc
Confidence 99999999886654311 1222 245555566678999999999999999998876543221 0 000
Q ss_pred -------hhccccchHHHhhhhccCCCCch-hHHHHhhccCcCCCCCHHHH----HHHHHH--HHhcCCHHHHHHHHHHH
Q 000321 414 -------QNEFEWIPGKILRCLYDKDFGSD-TIESVLCGSLFPTGFSVKDR----VRHWVR--IFSGFDRIEMKALEKIL 479 (1670)
Q Consensus 414 -------~~~~~wIPs~IL~~~Y~nD~~~~-lVE~vL~e~LlP~~~~~~~R----~~~ll~--l~~~LD~~~~kal~~il 479 (1670)
...+-||-.- .++.....- ..-. +++.++|.-.+.++. ....++ +.+-++....+ ..|
T Consensus 261 ss~~~iq~~al~Wi~ef----V~i~g~~~l~~~s~-il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~--~~i- 332 (675)
T KOG0212|consen 261 SSEPEIQLKALTWIQEF----VKIPGRDLLLYLSG-ILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLK--EEI- 332 (675)
T ss_pred CCcHHHHHHHHHHHHHH----hcCCCcchhhhhhh-hhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhc--ccc-
Confidence 0113444111 112111111 1222 245688875444332 222222 12222221111 000
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHH---hhcCCchHH--HHHHHHH-HhhccH------HHHHHH
Q 000321 480 EQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMS---RSFAEPAKA--EENFLIL-DQLKDA------NVWKIL 547 (1670)
Q Consensus 480 ~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kl~~~I~~Ls---~~FPDp~Ka--~~~L~kf-~kLnD~------RiykLL 547 (1670)
.-..+-..+++|+.- +. +.+++. +.+||. ..+|...-. ..-+..+ ..|-|+ +...++
T Consensus 333 -d~~~ii~vl~~~l~~-------~~--~~tri~-~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~ll 401 (675)
T KOG0212|consen 333 -DYGSIIEVLTKYLSD-------DR--EETRIA-VLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLL 401 (675)
T ss_pred -chHHHHHHHHHHhhc-------ch--HHHHHH-HHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHH
Confidence 001122233344431 22 222332 344543 444543221 1111111 222222 122233
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhccccChhHHHHHHHHHHhhcccchhhhHHHHHHHHHHH
Q 000321 548 MNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGIL 627 (1670)
Q Consensus 548 k~~id~~td~~t~~~a~~ELlkkL~~~~~l~e~l~~Ll~R~S~li~Nks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~I 627 (1670)
..++....++ ..++....|+.+..+..-+.+.--.|+.|.-++..|.++|=.-+..+-.. ..+-.+++..-+.|+.|
T Consensus 402 a~i~~s~~~~-~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~ILe~--e~nl~FAstMV~~Ln~i 478 (675)
T KOG0212|consen 402 ASICSSSNSP-NLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADILER--EENLKFASTMVQALNTI 478 (675)
T ss_pred HHHhcCcccc-cHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHHhc--cccchHHHHHHHHHHhh
Confidence 3333333222 22444455555555554455566668889999999999997766654332 33445777788999999
Q ss_pred HhhCCcCccccHHHHHHHHhh
Q 000321 628 ARFSPLLLGGTEEELVNLLKE 648 (1670)
Q Consensus 628 S~~~P~lFk~~v~~Li~lL~~ 648 (1670)
--+.|++| +|-+.|++
T Consensus 479 LlTStELf-----~LR~~Lk~ 494 (675)
T KOG0212|consen 479 LLTSTELF-----QLRNKLKD 494 (675)
T ss_pred hcccHHHH-----HHHHHHHh
Confidence 99999999 44444443
No 27
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.58 E-value=0.38 Score=61.52 Aligned_cols=100 Identities=26% Similarity=0.193 Sum_probs=80.7
Q ss_pred hhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhc-HHHHHHHHhhhc-----CCChhHHHHHHHHhHHHHhcCCCCCC
Q 000321 258 YLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQF-HSVFSEFLKRLT-----DRIVAVRMSVLEHVKSCLLTDPSRAD 331 (1670)
Q Consensus 258 ~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y-~~~w~~fL~R~~-----D~s~~VR~~~v~~~~~iL~~~p~~~~ 331 (1670)
+|+.-|..+-+.+|.-||..|.++|+. |+.-- |.+-...|++.. |.+++||++.++..+.++.+-.++..
T Consensus 224 ~l~~LL~d~~p~VRS~a~~gv~k~~s~----fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~ 299 (1005)
T KOG1949|consen 224 ELYSLLEDPYPMVRSTAILGVCKITSK----FWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPL 299 (1005)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHH----HHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhH
Confidence 445557778899999999999999985 55544 345667777764 67889999999999998876555555
Q ss_pred hHHHHHHHHhhhCCChhHHHHHHHHHHHHh
Q 000321 332 APQILTALCDRLLDFDENVRKQVVAVICDV 361 (1670)
Q Consensus 332 ~~eii~~L~~rL~D~DEkVR~aaVkai~~l 361 (1670)
-..++++|.--|+|.-|+||.|+|..+..+
T Consensus 300 le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 300 LEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 678889999999999999999999887544
No 28
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.48 E-value=0.014 Score=79.49 Aligned_cols=120 Identities=23% Similarity=0.201 Sum_probs=89.5
Q ss_pred hhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHH
Q 000321 255 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQ 334 (1670)
Q Consensus 255 ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~e 334 (1670)
.++.|-..|..+++.+|..|++.||+.-. +.+...+.....|.++.||...+..+..+....+.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~------ 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP------ 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc------
Confidence 55666677788999999999999998631 23455556667899999999999998776432221
Q ss_pred HHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000321 335 ILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 399 (1670)
Q Consensus 335 ii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~Vs~elL~~laeR~RDKK~~VR~eAm~~La~L 399 (1670)
...|...|.|+|+.||.+|+.++..+.... . ..+...+.|+.+.||.+|+..|+.+
T Consensus 686 -~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~-----~---~~l~~~L~D~d~~VR~~Av~aL~~~ 741 (897)
T PRK13800 686 -APALRDHLGSPDPVVRAAALDVLRALRAGD-----A---ALFAAALGDPDHRVRIEAVRALVSV 741 (897)
T ss_pred -hHHHHHHhcCCCHHHHHHHHHHHHhhccCC-----H---HHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 235666778899999999999887754211 1 2346688999999999999999974
No 29
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.46 E-value=3.7 Score=53.88 Aligned_cols=160 Identities=14% Similarity=0.049 Sum_probs=114.9
Q ss_pred HHHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHH
Q 000321 237 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVL 316 (1670)
Q Consensus 237 ~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v 316 (1670)
.|--+.+-.+-.|++-+--|-.+.--|...|..+|--|.+++..|= +..--|=...+--+-..|.+|-||....
T Consensus 91 VyvYLlrYAEeqpdLALLSIntfQk~L~DpN~LiRasALRvlSsIR------vp~IaPI~llAIk~~~~D~s~yVRk~AA 164 (968)
T KOG1060|consen 91 VYVYLLRYAEEQPDLALLSINTFQKALKDPNQLIRASALRVLSSIR------VPMIAPIMLLAIKKAVTDPSPYVRKTAA 164 (968)
T ss_pred HHHHHHHHhhcCCCceeeeHHHHHhhhcCCcHHHHHHHHHHHHhcc------hhhHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 3544555567789988888889999999999999999999987542 2333455666777789999999999999
Q ss_pred HHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHH
Q 000321 317 EHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERL 396 (1670)
Q Consensus 317 ~~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~Vs~elL~~laeR~RDKK~~VR~eAm~~L 396 (1670)
-+++.+..-.|+. -.+|++.+...|.|.+..|=-+||.++-++....++.|-.. .+.+..-+.|=.-==....|..|
T Consensus 165 ~AIpKLYsLd~e~--k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHkn-yrklC~ll~dvdeWgQvvlI~mL 241 (968)
T KOG1060|consen 165 HAIPKLYSLDPEQ--KDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKN-YRKLCRLLPDVDEWGQVVLINML 241 (968)
T ss_pred HhhHHHhcCChhh--HHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHH-HHHHHhhccchhhhhHHHHHHHH
Confidence 9999988776653 34899999999999999999999999988777777655443 22222333332211123455666
Q ss_pred HHHHHHHhh
Q 000321 397 ADIFRGCCL 405 (1670)
Q Consensus 397 a~LY~~~~~ 405 (1670)
.+.-+.+..
T Consensus 242 ~RYAR~~l~ 250 (968)
T KOG1060|consen 242 TRYARHQLP 250 (968)
T ss_pred HHHHHhcCC
Confidence 655444443
No 30
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.45 E-value=0.67 Score=59.58 Aligned_cols=241 Identities=19% Similarity=0.272 Sum_probs=150.9
Q ss_pred hhHHHHHHHHHHHHhccccc-----ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhhhhHHHH--------HHHHHHh
Q 000321 157 ESVLSSMQTIMIVLLEESED-----IQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGI--------KQFLVSS 223 (1670)
Q Consensus 157 ~~V~~~m~~IL~~vIeEse~-----vp~~vLd~IL~~l~~~~~~~a~~lA~~v~~~~~dkL~~~I--------~qyf~~i 223 (1670)
..|....+..+..++...+. +..+++..|+..+..... .....|..++...+.. ...+ ..-+.++
T Consensus 91 ~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~-~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l 168 (503)
T PF10508_consen 91 PKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDL-SVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSL 168 (503)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcH-HHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHH
Confidence 45666666666666666554 556677777777754332 2333444444333321 1222 2223333
Q ss_pred hcCCCCCCCCcchHHHHHHHHHhhCchhhhh-----hhhhhcccccCCChHHHHHHHHHHHHhhcCC-CCCchhhcHHHH
Q 000321 224 MSGDSRPGHSHIDYHEVIYDVYRCSPQILSG-----VVPYLTGELLTDQLDTRLKAVGLVGDLFAVP-GSANNEQFHSVF 297 (1670)
Q Consensus 224 l~~~~~~~~~~~~~h~Li~eL~~~~P~lL~~-----ViP~Le~EL~sed~~~Rl~At~llG~mfs~~-~~~~~~~y~~~w 297 (1670)
+... ......++++++.+|.+..|+.+.. +++.+..+|..+|+-+|+.|+++|++|-..+ |..+..+ ..++
T Consensus 169 ~~~~--~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~-~gi~ 245 (503)
T PF10508_consen 169 MSQS--SDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQ-QGIF 245 (503)
T ss_pred Hhcc--CHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHh-CCHH
Confidence 3221 1123357899999999999988765 5689999999999999999999999998855 3333322 2344
Q ss_pred HHHHhhh----cCC-ChhHHHH-HHHHhHHHHhcCCCC--CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh----
Q 000321 298 SEFLKRL----TDR-IVAVRMS-VLEHVKSCLLTDPSR--ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA---- 365 (1670)
Q Consensus 298 ~~fL~R~----~D~-s~~VR~~-~v~~~~~iL~~~p~~--~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~---- 365 (1670)
....... .|. ...+.+- .+++.+.+....|.. ...+.++..|...+...|...|..|+.+++.++.+.
T Consensus 246 ~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~ 325 (503)
T PF10508_consen 246 DKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQ 325 (503)
T ss_pred HHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHH
Confidence 4444443 333 2222221 234555544434421 112456666666677899999999999999987522
Q ss_pred -c-CCCCH---HHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000321 366 -L-NSIPV---ETVKLVAERLRDKSVLVKRYTMERLADIFRG 402 (1670)
Q Consensus 366 -l-~~Vs~---elL~~laeR~RDKK~~VR~eAm~~La~LY~~ 402 (1670)
+ ..-+. .+++.++++++.-+..+|..|+..|+.++..
T Consensus 326 ~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~ 367 (503)
T PF10508_consen 326 LLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTS 367 (503)
T ss_pred HHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Confidence 3 11122 3688999999999999999999999999964
No 31
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.20 E-value=2.3 Score=54.81 Aligned_cols=131 Identities=21% Similarity=0.220 Sum_probs=88.9
Q ss_pred hhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCC-ChhHHHHHHHHhHHHHhcCCCCCCh-
Q 000321 255 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDR-IVAVRMSVLEHVKSCLLTDPSRADA- 332 (1670)
Q Consensus 255 ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~-s~~VR~~~v~~~~~iL~~~p~~~~~- 332 (1670)
++|.|-.-|..+|..+-..|.++|..|.+.+. .+..-+++....-|...... +..||+-+.+.+..|...++.....
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~-~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~ 198 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHPE-GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAV 198 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCch-hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 45566666788999999999999999998653 23333222224445555555 7789999999998877665532111
Q ss_pred --HHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh--cCCC-CHHHHHHHHHhhccCCh
Q 000321 333 --PQILTALCDRLLDFDENVRKQVVAVICDVACHA--LNSI-PVETVKLVAERLRDKSV 386 (1670)
Q Consensus 333 --~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~--l~~V-s~elL~~laeR~RDKK~ 386 (1670)
+.+++.+...|.+.|--||+.++..+.++|... ...+ ...++..+...+.+-+.
T Consensus 199 ~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~ 257 (503)
T PF10508_consen 199 VNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEE 257 (503)
T ss_pred HhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhcccc
Confidence 137778888899999999999999999998722 2211 22345555555555443
No 32
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.17 E-value=0.55 Score=59.95 Aligned_cols=369 Identities=17% Similarity=0.187 Sum_probs=203.2
Q ss_pred HHHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHH--
Q 000321 237 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMS-- 314 (1670)
Q Consensus 237 ~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~-- 314 (1670)
+.+++-.+|+ -++|.-++|.|.+-|.+++=-+|-.++=.||-|--+=-.-|..--|.+.--++.-..|+.|-||..
T Consensus 378 aLDVLanvf~--~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITC 455 (885)
T KOG2023|consen 378 ALDVLANVFG--DELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITC 455 (885)
T ss_pred HHHHHHHhhH--HHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeee
Confidence 4556666654 367777899999999999999999999999977644211244455788888889999999999975
Q ss_pred H--HHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh-cCCCCH--HHHHHH---HHhhccCCh
Q 000321 315 V--LEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-LNSIPV--ETVKLV---AERLRDKSV 386 (1670)
Q Consensus 315 ~--v~~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~-l~~Vs~--elL~~l---aeR~RDKK~ 386 (1670)
| -.+++.++.-+++ .--.-++..|..|++|..-+|--|||.++..+...+ -+.||. .+|.++ ...-.-|+.
T Consensus 456 WTLsRys~wv~~~~~~-~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNL 534 (885)
T KOG2023|consen 456 WTLSRYSKWVVQDSRD-EYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNL 534 (885)
T ss_pred eeHhhhhhhHhcCChH-hhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcce
Confidence 3 3555555544432 223467889999999999999999999998876644 344553 122222 233344556
Q ss_pred hHHHHHHHHHHHHHHHHhhhccCCCcchhccccchHHHhh--hhccCCCCc-------hhHHHHhhccCcCCCCCHHHHH
Q 000321 387 LVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILR--CLYDKDFGS-------DTIESVLCGSLFPTGFSVKDRV 457 (1670)
Q Consensus 387 ~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~~wIPs~IL~--~~Y~nD~~~-------~lVE~vL~e~LlP~~~~~~~R~ 457 (1670)
.|==.||-+||.--..+..+.. -++. -||--|=. ..-+.|.+. ..|-..|-..++|+--++=+|.
T Consensus 535 lILYDAIgtlAdsvg~~Ln~~~----Yiqi--LmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc 608 (885)
T KOG2023|consen 535 LILYDAIGTLADSVGHALNKPA----YIQI--LMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRC 608 (885)
T ss_pred ehHHHHHHHHHHHHHHhcCcHH----HHHH--hccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHH
Confidence 6666777777776654432211 0000 11221111 111223221 1466667778888887777776
Q ss_pred HHHHHHH------hcCCHH--------HHHHHHHHHHHHHHHHHHHHHHH------HHH-hhhcCCCcHHHHHHHHHHHH
Q 000321 458 RHWVRIF------SGFDRI--------EMKALEKILEQKQRLQQEMQRYL------SLR-QMHQDGDAPEIQKKILFCFR 516 (1670)
Q Consensus 458 ~~ll~l~------~~LD~~--------~~kal~~il~~k~~l~~~~~~~l------~l~-~~~~~~d~~ei~~kl~~~I~ 516 (1670)
-++++=+ .+-|+. -+-+|.-+.+.-+.+-..+..++ ++. +..+ ..-+++.+.--..+-
T Consensus 609 ~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~-D~~peVRQS~FALLG 687 (885)
T KOG2023|consen 609 FRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQ-DEVPEVRQSAFALLG 687 (885)
T ss_pred HHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhc-cCChHHHHHHHHHHH
Confidence 6665411 111110 00112222222222222222221 111 1122 245666543222222
Q ss_pred HHHhhcCCchHHHHHHHHHHhhccHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhccccC
Q 000321 517 VMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSN--TSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFN 594 (1670)
Q Consensus 517 ~Ls~~FPDp~Ka~~~L~kf~kLnD~RiykLLk~~id~~--td~~t~~~a~~ELlkkL~~~~~l~e~l~~Ll~R~S~li~N 594 (1670)
-|++++++..+. +=..++.+|-.-.+++ +-+..+.-|.-|+--|++.+. +.+++.++++.-. ++|
T Consensus 688 Dltk~c~~~v~p----------~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~--~~~v~~vl~~L~~-iin 754 (885)
T KOG2023|consen 688 DLTKACFEHVIP----------NLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKM--KQYVSPVLEDLIT-IIN 754 (885)
T ss_pred HHHHHHHHhccc----------hHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhh--hhHHHHHHHHHHH-Hhc
Confidence 233433332221 1123444444444554 345666677888888888664 3566766666543 334
Q ss_pred hhHHH-HHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccHHHHH
Q 000321 595 KEHVK-EILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELV 643 (1670)
Q Consensus 595 ks~V~-~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v~~Li 643 (1670)
+.+.+ +|++.. | --+-.+..+||+++..|.+..+
T Consensus 755 ~~~~~~tllENt--------------A-ITIGrLg~~~Pe~vAp~l~~f~ 789 (885)
T KOG2023|consen 755 RQNTPKTLLENT--------------A-ITIGRLGYICPEEVAPHLDSFM 789 (885)
T ss_pred ccCchHHHHHhh--------------h-hhhhhhhccCHHhcchhHHHHH
Confidence 44333 333311 1 1123367799999999876554
No 33
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.95 E-value=1.6 Score=56.02 Aligned_cols=231 Identities=16% Similarity=0.183 Sum_probs=147.3
Q ss_pred HHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCH--
Q 000321 294 HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV-- 371 (1670)
Q Consensus 294 ~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~Vs~-- 371 (1670)
.+++-.-|..|.|+.+.||-+...+++.++..-+.. -...++..+..-+.+.-++=-.++|+.++-++......++.
T Consensus 215 v~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~-aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~l 293 (569)
T KOG1242|consen 215 VPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAY-AVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCL 293 (569)
T ss_pred HhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcc-hhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHH
Confidence 556666677889999999999999888766553322 23566666666677777777788888888777665544433
Q ss_pred -HHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCcchhccccchHHHhhhhccCCCC-chhHHHHhhccCcCC
Q 000321 372 -ETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFG-SDTIESVLCGSLFPT 449 (1670)
Q Consensus 372 -elL~~laeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~~wIPs~IL~~~Y~nD~~-~~lVE~vL~e~LlP~ 449 (1670)
+++..+.+.|-|-|+.||+.++++|-++=... ++ ..+.-|=.+++.|+-++.-+ ...++.+...
T Consensus 294 p~iiP~lsevl~DT~~evr~a~~~~l~~~~svi-----dN----~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~t----- 359 (569)
T KOG1242|consen 294 PDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI-----DN----PDIQKIIPTLLDALADPSCYTPECLDSLGAT----- 359 (569)
T ss_pred hHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh-----cc----HHHHHHHHHHHHHhcCcccchHHHHHhhcce-----
Confidence 56788999999999999999999998876652 11 12444456777776443311 2344444433
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCchHHH
Q 000321 450 GFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAE 529 (1670)
Q Consensus 450 ~~~~~~R~~~ll~l~~~LD~~~~kal~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kl~~~I~~Ls~~FPDp~Ka~ 529 (1670)
++..+.|+.+..-+--|+.+.-. - -+..++++...+|..+++..+||....
T Consensus 360 ------------tFV~~V~~psLalmvpiL~R~l~----------e-------Rst~~kr~t~~IidNm~~LveDp~~la 410 (569)
T KOG1242|consen 360 ------------TFVAEVDAPSLALMVPILKRGLA----------E-------RSTSIKRKTAIIIDNMCKLVEDPKDLA 410 (569)
T ss_pred ------------eeeeeecchhHHHHHHHHHHHHh----------h-------ccchhhhhHHHHHHHHHHhhcCHHHHh
Confidence 23345555444333333322111 1 123455666777888999888988877
Q ss_pred HHHHHHHhhccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 000321 530 ENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAK 574 (1670)
Q Consensus 530 ~~L~kf~kLnD~RiykLLk~~id~~td~~t~~~a~~ELlkkL~~~ 574 (1670)
..|-.+. +.+...+.+. .|++.+ .+.++.-.+++++|..
T Consensus 411 pfl~~Ll----p~lk~~~~d~-~PEvR~-vaarAL~~l~e~~g~~ 449 (569)
T KOG1242|consen 411 PFLPSLL----PGLKENLDDA-VPEVRA-VAARALGALLERLGEV 449 (569)
T ss_pred hhHHHHh----hHHHHHhcCC-ChhHHH-HHHHHHHHHHHHHHhh
Confidence 7776655 4455555555 566655 3345666777777765
No 34
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.78 E-value=0.09 Score=59.83 Aligned_cols=146 Identities=18% Similarity=0.154 Sum_probs=104.3
Q ss_pred hhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHH
Q 000321 256 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQI 335 (1670)
Q Consensus 256 iP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei 335 (1670)
++.|...+.+..-.+-..|..+++.|+..-+..|......+....|++..|....||.....+...|+.+-+.. ..+
T Consensus 55 ~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~---~~~ 131 (228)
T PF12348_consen 55 LDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYS---PKI 131 (228)
T ss_dssp -HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH---HHH
Confidence 34555556666677888999999999987666666667788889999999999999999999998887764411 245
Q ss_pred -HHHHHhhhCCChhHHHHHHHHHHHHhhhhhc---CCCC-----HHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHh
Q 000321 336 -LTALCDRLLDFDENVRKQVVAVICDVACHAL---NSIP-----VETVKLVAERLRDKSVLVKRYTMERLADIFRGCC 404 (1670)
Q Consensus 336 -i~~L~~rL~D~DEkVR~aaVkai~~la~~~l---~~Vs-----~elL~~laeR~RDKK~~VR~eAm~~La~LY~~~~ 404 (1670)
...+..-+.+-...||..++..+..+..... ..+. ..+...+..-+.|.++.||..|-..+..+|+.+-
T Consensus 132 ~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 132 LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 7888888999999999999998877654333 2221 3467899999999999999999999999999763
No 35
>KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only]
Probab=95.70 E-value=0.0095 Score=68.65 Aligned_cols=67 Identities=25% Similarity=0.397 Sum_probs=52.6
Q ss_pred cCCCCCCCccccceEEEecCCCCceEEEEEEEecC-CCCeeEEEccCCc----ceeeec---CcceEEEecCCCC
Q 000321 1362 KNAGVNIEDLIGYRIKVWWPMDKQFYEGTIKSYDP-IKKKHVILYDDED----VEVLRL---DKERWELLDNGRK 1428 (1670)
Q Consensus 1362 ~~~~~~~~~lvG~rv~V~Wp~D~~~Y~G~V~~y~~-~~~~H~v~YdDGd----~E~l~L---~~e~~~~~~~~~~ 1428 (1670)
.-+...++.+||++|..-||+++.||++.|+.|+. ...+|.+.||..+ .+|++| ..|+++|...+..
T Consensus 151 ~~~n~pp~slvgr~v~~k~pdk~~~te~iit~~~~~~E~~~~l~~~~~~~~~p~~wvdl~~I~p~DIrw~g~~~~ 225 (273)
T KOG4675|consen 151 SWGNVPPESLVGRKVWIKWPDKRKFTEAIITQYDAEKEGHHLLVPDINDCNDPWEWVDLREISPEDIRWEGGDPG 225 (273)
T ss_pred ccccCCchhhccccccccCcccccccccccccchhhhhhhhhcccccccccCCccccccccCCHHhccccCCCCC
Confidence 34566778899999999999999999999999554 5557888888665 567776 4788888766443
No 36
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.70 E-value=14 Score=50.75 Aligned_cols=167 Identities=16% Similarity=0.163 Sum_probs=99.3
Q ss_pred hhHHHHHHHHHhhhhheeeccCC-chHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHhcC
Q 000321 113 GRRVVILETLAKYRSCVVMLDLE-CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGR 191 (1670)
Q Consensus 113 ~q~~~LLe~La~vks~vl~~DL~-~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vIeEse~vp~~vLd~IL~~l~~ 191 (1670)
..-++.+.-+.+-..++-..|.+ |=.=+..+|..||.+- ....+.+......++..|+.++-.+-..+-..++..+..
T Consensus 282 ~~t~~W~~v~~~~~~~la~~q~~~~~~~~~~~~~~~~t~~-~s~~~e~~q~a~q~l~~il~~sv~~~~~~c~~~~~~~l~ 360 (1176)
T KOG1248|consen 282 LLTVAWLKVLNEAHDILATLQEEKALQALPRLFSLFFTIL-ESLIEELVQAASQSLKEILKESVTVIDALCSKQLHSLLD 360 (1176)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHhhhhhhhHHHHHH-hcccHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHc
Confidence 45567777777776666666655 4455677888888843 344567788889999999999888666666665555544
Q ss_pred CCcHHHHH----HHHHHHHHhhhhhHHHHHHHHHHhhc-CCCCCCCCcchHH-HHHHHHHhhCchhhhhhhhhhcccccC
Q 000321 192 NKNDTARR----LAMNVIEQCAGKLEAGIKQFLVSSMS-GDSRPGHSHIDYH-EVIYDVYRCSPQILSGVVPYLTGELLT 265 (1670)
Q Consensus 192 ~~~~~a~~----lA~~v~~~~~dkL~~~I~qyf~~il~-~~~~~~~~~~~~h-~Li~eL~~~~P~lL~~ViP~Le~EL~s 265 (1670)
-+..++|. +-..+|++|...-.|++..-+..+-. ..+........++ -+.-.+-..=|+.+++++|.=- ..
T Consensus 361 ~kf~~~~~~ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl---~~ 437 (1176)
T KOG1248|consen 361 YKFHAVWRFILQILSALFEKCGELSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNL---HA 437 (1176)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhc---cc
Confidence 44445554 44555666665444554444433211 1112222223443 4556667779999999999722 22
Q ss_pred C-ChHHHHHHHHHHHHhhc
Q 000321 266 D-QLDTRLKAVGLVGDLFA 283 (1670)
Q Consensus 266 e-d~~~Rl~At~llG~mfs 283 (1670)
+ ..-.|.=-.-+|-+-+-
T Consensus 438 ~s~~~~RsWLLPvLR~~i~ 456 (1176)
T KOG1248|consen 438 ESLSFTRSWLLPVLRDYII 456 (1176)
T ss_pred cccccchhHhHHHHHHhhc
Confidence 2 23344444444444443
No 37
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.67 E-value=0.77 Score=54.18 Aligned_cols=231 Identities=12% Similarity=0.198 Sum_probs=150.6
Q ss_pred hhhcCCCcchHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhheeeccC
Q 000321 55 VLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDL 134 (1670)
Q Consensus 55 ~LL~HkD~~Vra~vAcCLadIlRI~APdaPytd~~LkdIF~lfi~qf~~L~d~~~p~f~q~~~LLe~La~vks~vl~~DL 134 (1670)
..|.+.|..+|+-.--||+++|-=..|+ ..+..|+.-++.||.+-| .|. .-+...|.-....+-|-.+
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~-~L~~~ev~~L~~F~~~rl---~D~--------~~~~~~l~gl~~L~~~~~~ 73 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPD-FLSRQEVQVLLDFFCSRL---DDH--------ACVQPALKGLLALVKMKNF 73 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHh-hccHHHHHHHHHHHHHHh---ccH--------hhHHHHHHHHHHHHhCcCC
Confidence 4678899999999999999999765444 488899999999999865 342 2233333333333334344
Q ss_pred CchHHHHHHHHHHHhhhc-CCChhhHHHHHHHHHHHHhcc----cccccHHHHHHHHHHhcCCCcH----HHHHHHHHHH
Q 000321 135 ECDELVNEMYSTFFAVAS-DDHPESVLSSMQTIMIVLLEE----SEDIQEDLLVILLSALGRNKND----TARRLAMNVI 205 (1670)
Q Consensus 135 ~~~~Li~~lF~~ff~~v~-~~~~~~V~~~m~~IL~~vIeE----se~vp~~vLd~IL~~l~~~~~~----~a~~lA~~v~ 205 (1670)
+. +....+.+.+|+-+. ..++...+...-.||..+++. ...+..+.+.-++..+..++-. -++.|...|+
T Consensus 74 ~~-~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~ 152 (262)
T PF14500_consen 74 SP-ESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVIL 152 (262)
T ss_pred Ch-hhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 32 235555555555443 345666666666666666655 3446778888777777544432 7788888877
Q ss_pred HHhhhhhHHHHHHHHHHhhc------CCCCCCCCcchHHHHHHHHHhh---CchhhhhhhhhhcccccCCChHHHHHHHH
Q 000321 206 EQCAGKLEAGIKQFLVSSMS------GDSRPGHSHIDYHEVIYDVYRC---SPQILSGVVPYLTGELLTDQLDTRLKAVG 276 (1670)
Q Consensus 206 ~~~~dkL~~~I~qyf~~il~------~~~~~~~~~~~~h~Li~eL~~~---~P~lL~~ViP~Le~EL~sed~~~Rl~At~ 276 (1670)
..-. +.+.+..+|--+.. ..+......+..-+|-..|..| .|..-.-++|.|-+.|.++...++..+.+
T Consensus 153 ~~~~--~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~ 230 (262)
T PF14500_consen 153 QEFD--ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQ 230 (262)
T ss_pred Hhcc--cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 7655 46666777743321 1111111244445555555544 67777789999999999999999999999
Q ss_pred HHHHhhcCCCCC-chhhcHHHHHHH
Q 000321 277 LVGDLFAVPGSA-NNEQFHSVFSEF 300 (1670)
Q Consensus 277 llG~mfs~~~~~-~~~~y~~~w~~f 300 (1670)
+|..++..-|.. +..-..++|.+.
T Consensus 231 tL~~c~~~y~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 231 TLKACIENYGADSLSPHWSTIWNAL 255 (262)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 999999876643 334446777754
No 38
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.51 E-value=9.8 Score=49.55 Aligned_cols=198 Identities=19% Similarity=0.188 Sum_probs=132.1
Q ss_pred HHHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchh-----hcHHHHHHHHhhhcCCChhH
Q 000321 237 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE-----QFHSVFSEFLKRLTDRIVAV 311 (1670)
Q Consensus 237 ~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~-----~y~~~w~~fL~R~~D~s~~V 311 (1670)
.-++++.|++ |-|.--|++.|-.+|..|..++-+.|--.+.+... --..-|....+=..|--|.|
T Consensus 167 Veeml~rL~~----------p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~V 236 (1005)
T KOG1949|consen 167 VEEMLYRLYK----------PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMV 236 (1005)
T ss_pred HHHHHHHHHh----------HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchH
Confidence 3456665554 66778899999999999999999999876655422 22333555566778999999
Q ss_pred HHHHHHHhHHHHhc----CCCCCChHHHHHHH-HhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHH-HHHHHHHhhccCC
Q 000321 312 RMSVLEHVKSCLLT----DPSRADAPQILTAL-CDRLLDFDENVRKQVVAVICDVACHALNSIPVE-TVKLVAERLRDKS 385 (1670)
Q Consensus 312 R~~~v~~~~~iL~~----~p~~~~~~eii~~L-~~rL~D~DEkVR~aaVkai~~la~~~l~~Vs~e-lL~~laeR~RDKK 385 (1670)
|-..++.+-.+..- -|.. ...++++.+ .+.-.|+--.||.+|++.+-.++.....+--.+ +|..|..-+.|+.
T Consensus 237 RS~a~~gv~k~~s~fWe~iP~~-i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~s 315 (1005)
T KOG1949|consen 237 RSTAILGVCKITSKFWEMIPPT-ILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNS 315 (1005)
T ss_pred HHHHHHHHHHHHHHHHHHcCHH-HHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccc
Confidence 99999887765532 2542 234555433 334589999999999999988776554433223 4678888899999
Q ss_pred hhHHHHHHHHHHHHHHHHhhhccCCCcchhccccchHHHhhhhccCCCC--chhHHHHhhccCcCCCCCHH
Q 000321 386 VLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFG--SDTIESVLCGSLFPTGFSVK 454 (1670)
Q Consensus 386 ~~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~~wIPs~IL~~~Y~nD~~--~~lVE~vL~e~LlP~~~~~~ 454 (1670)
-+||..+...|.+|=.+-.- +-+.-||--.+-.--..|-+ ..-+-+.++...||..-+.+
T Consensus 316 e~VRvA~vd~ll~ik~vra~---------~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~k~ee 377 (1005)
T KOG1949|consen 316 EKVRVAFVDMLLKIKAVRAA---------KFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFLPVNKPEE 377 (1005)
T ss_pred hhHHHHHHHHHHHHHhhhhh---------hhhccccHHHHHHHHhccccHHHHHHHHHHHHhhcCCCCcHH
Confidence 99999999999998775321 22334444333222233432 12344555667788775544
No 39
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=95.40 E-value=3.1 Score=54.00 Aligned_cols=218 Identities=17% Similarity=0.254 Sum_probs=117.9
Q ss_pred hhcCCCcchHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhheeeccCC
Q 000321 56 LLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLE 135 (1670)
Q Consensus 56 LL~HkD~~Vra~vAcCLadIlRI~APdaPytd~~LkdIF~lfi~qf~~L~d~~~p~f~q~~~LLe~La~vks~vl~~DL~ 135 (1670)
.|.....-||..+|.||+-+.-. -.||.-+++..||+.+-.-.+.=. + +.....|..+.. .+.+.|
T Consensus 561 gl~De~qkVR~itAlalsalaea---a~Pygie~fDsVlkpLwkgir~hr---g---k~laafLkAigy---liplmd-- 626 (1172)
T KOG0213|consen 561 GLKDEQQKVRTITALALSALAEA---ATPYGIEQFDSVLKPLWKGIRQHR---G---KELAAFLKAIGY---LIPLMD-- 626 (1172)
T ss_pred hhcccchhhhhHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHHHcc---C---hHHHHHHHHHhh---cccccc--
Confidence 34445566999999999988765 468999999999998865443211 1 112333333322 112111
Q ss_pred chHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHhhhh
Q 000321 136 CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNK----NDTARRLAMNVIEQCAGK 211 (1670)
Q Consensus 136 ~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vIeEse~vp~~vLd~IL~~l~~~~----~~~a~~lA~~v~~~~~dk 211 (1670)
.-+..+|. ..+|.-+|-|..+-..+.-.++|.-+.+.- .+++|.- .|.
T Consensus 627 ------~eya~yyT--------------revmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r--------~di 678 (1172)
T KOG0213|consen 627 ------AEYASYYT--------------REVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIR--------FDI 678 (1172)
T ss_pred ------HHHHHHhH--------------HHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHh--------hhh
Confidence 12222222 345666667766555555555555443221 1133321 122
Q ss_pred hHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhh--CchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCC-
Q 000321 212 LEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRC--SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA- 288 (1670)
Q Consensus 212 L~~~I~qyf~~il~~~~~~~~~~~~~h~Li~eL~~~--~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~- 288 (1670)
+...+..|.+--+.+|.. .-..+-+.-.+|..- |-.++.- +-.+|..|.++.|..+.+++.++|+..|..
T Consensus 679 lp~ff~~fw~rrmA~drr---~ykqlv~ttv~ia~KvG~~~~v~R----~v~~lkde~e~yrkm~~etv~ri~~~lg~~d 751 (1172)
T KOG0213|consen 679 LPEFFFSFWGRRMALDRR---NYKQLVDTTVEIAAKVGSDPIVSR----VVLDLKDEPEQYRKMVAETVSRIVGRLGAAD 751 (1172)
T ss_pred hHHHHhhhhhhhhhcccc---chhhHHHHHHHHHHHhCchHHHHH----HhhhhccccHHHHHHHHHHHHHHHhcccccc
Confidence 222222222222222211 000112222222211 2233333 335678899999999999999999876532
Q ss_pred ----------------c------------------------hhhc-HHHHHHHHhhhcCCChhHHHHHHHHhHHH
Q 000321 289 ----------------N------------------------NEQF-HSVFSEFLKRLTDRIVAVRMSVLEHVKSC 322 (1670)
Q Consensus 289 ----------------~------------------------~~~y-~~~w~~fL~R~~D~s~~VR~~~v~~~~~i 322 (1670)
| ++.| |.+-..-|.|.+.+++.||....+.+..+
T Consensus 752 iderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~l 826 (1172)
T KOG0213|consen 752 IDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSL 826 (1172)
T ss_pred ccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 1 1222 66677778899999999999877766553
No 40
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.28 E-value=0.06 Score=51.64 Aligned_cols=86 Identities=23% Similarity=0.232 Sum_probs=65.7
Q ss_pred hhhhcccc-cCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHH
Q 000321 256 VPYLTGEL-LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQ 334 (1670)
Q Consensus 256 iP~Le~EL-~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~e 334 (1670)
||.|-..| ..++..+|..|+.+||++- .+.+...++..+.|.++.||.+.+...+.+ - ..+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i-~-------~~~ 62 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRI-G-------DPE 62 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC-H-------HHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh-C-------CHH
Confidence 45666667 7889999999999999431 235566666667999999999999999864 1 246
Q ss_pred HHHHHHhhhCCC-hhHHHHHHHHHHH
Q 000321 335 ILTALCDRLLDF-DENVRKQVVAVIC 359 (1670)
Q Consensus 335 ii~~L~~rL~D~-DEkVR~aaVkai~ 359 (1670)
.+..|.+.+.|. +..||.+++.+++
T Consensus 63 ~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 63 AIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp THHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 888999988775 5567999888763
No 41
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.26 E-value=1.6 Score=55.21 Aligned_cols=254 Identities=17% Similarity=0.172 Sum_probs=141.8
Q ss_pred cccCCChHHHHHHHHHHHHhhcCCCCCc-hhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHH
Q 000321 262 ELLTDQLDTRLKAVGLVGDLFAVPGSAN-NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALC 340 (1670)
Q Consensus 262 EL~sed~~~Rl~At~llG~mfs~~~~~~-~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~eii~~L~ 340 (1670)
-+.+.+-.+|....++|+.+.-.-+ .+ -.-|-.+--..+.|.-|+.+.||.+.|.+.-..= .-+.++...+...|.
T Consensus 99 g~eskdk~VR~r~lqila~~~d~v~-eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Q--e~~~neen~~~n~l~ 175 (885)
T COG5218 99 GTESKDKKVRKRSLQILALLSDVVR-EIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQ--EMELNEENRIVNLLK 175 (885)
T ss_pred cccCcchhHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH--hccCChHHHHHHHHH
Confidence 3457899999999999998765433 11 1234455667889999999999999999876532 122333445555544
Q ss_pred hh-hCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCcchhcccc
Q 000321 341 DR-LLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEW 419 (1670)
Q Consensus 341 ~r-L~D~DEkVR~aaVkai~~la~~~l~~Vs~elL~~laeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~~w 419 (1670)
.- -+||-+.||.+|.--| .|+..++-.+.||.||=....|+- +|....+++.+ -++..
T Consensus 176 ~~vqnDPS~EVRr~allni---------~vdnsT~p~IlERarDv~~anRr~-------vY~r~Lp~iGd-----~~~ls 234 (885)
T COG5218 176 DIVQNDPSDEVRRLALLNI---------SVDNSTYPCILERARDVSGANRRM-------VYERCLPRIGD-----LKSLS 234 (885)
T ss_pred HHHhcCcHHHHHHHHHHHe---------eeCCCcchhHHHHhhhhhHHHHHH-------HHHHHhhhhcc-----hhhcc
Confidence 43 4899999999965554 355566777899999999888874 45544444321 23444
Q ss_pred chHHHhhhhc-cCC--CC--chhHHHHhhccCcCCCCCHHHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHH--HHHH
Q 000321 420 IPGKILRCLY-DKD--FG--SDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRI----EMKALEKILEQKQR--LQQE 488 (1670)
Q Consensus 420 IPs~IL~~~Y-~nD--~~--~~lVE~vL~e~LlP~~~~~~~R~~~ll~l~~~LD~~----~~kal~~il~~k~~--l~~~ 488 (1670)
|--+|+-.=+ -+| +. ...+|-+....+.|.+.+ ++.+...+|-. .++|+..++..+.- .+..
T Consensus 235 i~kri~l~ewgl~dRe~sv~~a~~d~ia~~w~~~~d~~-------lveLle~lDvSr~sv~v~aik~~F~~R~D~ls~~e 307 (885)
T COG5218 235 IDKRILLMEWGLLDREFSVKGALVDAIASAWRIPEDLR-------LVELLEFLDVSRRSVLVAAIKGVFEKRPDVLSEKE 307 (885)
T ss_pred ccceehhhhhcchhhhhhHHHHHHHHHHHHhccccccc-------HHHHHHHHhhhhHHHHHHHHHHHHhhccccchhhh
Confidence 5444442211 222 22 237777777777777643 33333334332 22233333221100 0111
Q ss_pred HHHHHHHHhhhcCCCcHHHH-H----HHHHHHHHHHhhcCCchHHHHHHHHHHhhccHHHHHHHHH
Q 000321 489 MQRYLSLRQMHQDGDAPEIQ-K----KILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMN 549 (1670)
Q Consensus 489 ~~~~l~l~~~~~~~d~~ei~-~----kl~~~I~~Ls~~FPDp~Ka~~~L~kf~kLnD~RiykLLk~ 549 (1670)
+-.|+ +.... .+..-.. + =|...|.-|-.-||+..+....+..+-.+.++..|.-+-+
T Consensus 308 FPe~~--w~d~T-~E~tfL~rt~~lyCldnNitell~~fPe~~~L~~~~~hyvslry~sSYnt~cf 370 (885)
T COG5218 308 FPEYL--WSDPT-EENTFLSRTELLYCLDNNITELLGRFPESLALPDLESHYVSLRYRSSYNTLCF 370 (885)
T ss_pred cHHHH--hhCch-HHHHHHHHHHHHHHHhccHHHHHhhchhhhcchHHHhhheeeeeccccchhHH
Confidence 11111 00000 0000000 0 1122244444559999998888888888887764444433
No 42
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.12 E-value=21 Score=49.10 Aligned_cols=312 Identities=13% Similarity=0.131 Sum_probs=173.2
Q ss_pred hhhcCCCcchHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhheeeccC
Q 000321 55 VLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDL 134 (1670)
Q Consensus 55 ~LL~HkD~~Vra~vAcCLadIlRI~APdaPytd~~LkdIF~lfi~qf~~L~d~~~p~f~q~~~LLe~La~vks~vl~~DL 134 (1670)
.+++-.-.-||--.|--+|+|.|---|+ +--++.+|++.+.. +++.+.-.-.++||.++.++..- .+-
T Consensus 87 ~~~~E~~~~vr~k~~dviAeia~~~l~e------~WPell~~L~q~~~---S~~~~~rE~al~il~s~~~~~~~---~~~ 154 (1075)
T KOG2171|consen 87 IIQSETEPSVRHKLADVIAEIARNDLPE------KWPELLQFLFQSTK---SPNPSLRESALLILSSLPETFGN---TLQ 154 (1075)
T ss_pred HHHhccchHHHHHHHHHHHHHHHhcccc------chHHHHHHHHHHhc---CCCcchhHHHHHHHHhhhhhhcc---ccc
Confidence 4555566779999999999999988887 56677888887754 34444445568888888875422 111
Q ss_pred CchHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHhcccc--c-ccHHHHHH---HHHH---hcCCCcHHHHHHHHHHH
Q 000321 135 ECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESE--D-IQEDLLVI---LLSA---LGRNKNDTARRLAMNVI 205 (1670)
Q Consensus 135 ~~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vIeEse--~-vp~~vLd~---IL~~---l~~~~~~~a~~lA~~v~ 205 (1670)
+--+-+..||...+.- ++.+ |...-..-++.++...+ . .-...-+. ++.. +.......+...+.+.+
T Consensus 155 ~~~~~l~~lf~q~~~d--~s~~--vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l 230 (1075)
T KOG2171|consen 155 PHLDDLLRLFSQTMTD--PSSP--VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEAL 230 (1075)
T ss_pred hhHHHHHHHHHHhccC--Ccch--HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHH
Confidence 2234566777766642 2333 66666666666666654 1 11111111 1111 11222222333333334
Q ss_pred HHhhhhhHHHHHHHHHHhhc-----CCCCCCCCcc--hHHHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHH
Q 000321 206 EQCAGKLEAGIKQFLVSSMS-----GDSRPGHSHI--DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLV 278 (1670)
Q Consensus 206 ~~~~dkL~~~I~qyf~~il~-----~~~~~~~~~~--~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~ll 278 (1670)
..-+...-+.+..+|.+++. -.+...+... .+-++|.-+-+++|.++----| +-+ .+...++
T Consensus 231 ~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~-~~~----------~lv~~~l 299 (1075)
T KOG2171|consen 231 IELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLAL-LGH----------TLVPVLL 299 (1075)
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchh-hhc----------cHHHHHH
Confidence 33333333444444444331 1112222222 3667787777777766543222 111 1111222
Q ss_pred HHhhcCCCCCchhhcHHHHHHHHh-hhcCCCh-hHHHHHHHHhHHHHhcCCC-CCChHHHHHHHHhhhCCChhHHHHHHH
Q 000321 279 GDLFAVPGSANNEQFHSVFSEFLK-RLTDRIV-AVRMSVLEHVKSCLLTDPS-RADAPQILTALCDRLLDFDENVRKQVV 355 (1670)
Q Consensus 279 G~mfs~~~~~~~~~y~~~w~~fL~-R~~D~s~-~VR~~~v~~~~~iL~~~p~-~~~~~eii~~L~~rL~D~DEkVR~aaV 355 (1670)
. |...-..+ .+|++ --.|.+- +.=.-+.+.+-+.|..+.. .-..+.+.+++...|.-++++=|.|++
T Consensus 300 ~-~mte~~~D---------~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL 369 (1075)
T KOG2171|consen 300 A-MMTEEEDD---------DEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAAL 369 (1075)
T ss_pred H-hcCCcccc---------hhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHH
Confidence 2 22211111 45554 1111111 1112223334444555532 234567889999999999999999999
Q ss_pred HHHHHhhhhhcCCC---CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHH
Q 000321 356 AVICDVACHALNSI---PVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 403 (1670)
Q Consensus 356 kai~~la~~~l~~V---s~elL~~laeR~RDKK~~VR~eAm~~La~LY~~~ 403 (1670)
.+|+.++--..+.+ =..++..+..-+.|-++.||-.|+..+|++=-..
T Consensus 370 ~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl 420 (1075)
T KOG2171|consen 370 LALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDL 420 (1075)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhh
Confidence 99998875333322 2346778889999999999999999999886554
No 43
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.77 E-value=5.4 Score=52.48 Aligned_cols=374 Identities=13% Similarity=0.096 Sum_probs=194.0
Q ss_pred hhhhhhcccccCCChHHHHHHHH-HHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCCh
Q 000321 254 GVVPYLTGELLTDQLDTRLKAVG-LVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADA 332 (1670)
Q Consensus 254 ~ViP~Le~EL~sed~~~Rl~At~-llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~ 332 (1670)
+.+|.+-.+|.+.-...|..|++ +++.|--+. ++.. +|...++-..=.+.+.-..+=.++...-..+|.. +
T Consensus 13 ~ei~elks~l~s~~~~kr~~a~kkvIa~Mt~G~--DvSs----lF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~--a 84 (734)
T KOG1061|consen 13 GEIPELKSQLNSQSKEKRKDAVKKVIAYMTVGK--DVSS----LFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL--A 84 (734)
T ss_pred hhchHHHHHhhhhhhhhHHHHHHHHHhcCccCc--chHh----hhHHHHhhcccCCchHHHHHHHHHHHhhccCchH--H
Confidence 34555556665555566666664 566665542 4444 4455555444445666665656655555556753 3
Q ss_pred HHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCc
Q 000321 333 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSI 412 (1670)
Q Consensus 333 ~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~Vs~elL~~laeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~~~~ 412 (1670)
...+..+.+-.-|+++.+|.-|+... .+-....+.+-+..-+..-++|+.+-||+.|...++++|.....-+.
T Consensus 85 ~~avnt~~kD~~d~np~iR~lAlrtm---~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~---- 157 (734)
T KOG1061|consen 85 ILAVNTFLKDCEDPNPLIRALALRTM---GCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVE---- 157 (734)
T ss_pred HhhhhhhhccCCCCCHHHHHHHhhce---eeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhcc----
Confidence 35668888889999999999865554 33334444555667778888999999999999999999985432111
Q ss_pred chhccccchHHHhhhhccCCCCc-----hhHHHHhhcc--CcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 000321 413 NQNEFEWIPGKILRCLYDKDFGS-----DTIESVLCGS--LFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRL 485 (1670)
Q Consensus 413 ~~~~~~wIPs~IL~~~Y~nD~~~-----~lVE~vL~e~--LlP~~~~~~~R~~~ll~l~~~LD~~~~kal~~il~~k~~l 485 (1670)
-..++..+=.++.+.++.. ..+..|.-.. -.++..+ ......++.....+++.+. ..|+..
T Consensus 158 ----~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~-~~~~~~lL~al~ec~EW~q---i~IL~~---- 225 (734)
T KOG1061|consen 158 ----DSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELN-PQLINKLLEALNECTEWGQ---IFILDC---- 225 (734)
T ss_pred ----ccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCccccc-HHHHHHHHHHHHHhhhhhH---HHHHHH----
Confidence 1222333333333222220 1111111111 1111111 2345555554444444322 111111
Q ss_pred HHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCC--chHHHHHHHHHHhhccHHHHH-HHH-------HHhc--C
Q 000321 486 QQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAE--PAKAEENFLILDQLKDANVWK-ILM-------NLLD--S 553 (1670)
Q Consensus 486 ~~~~~~~l~l~~~~~~~d~~ei~~kl~~~I~~Ls~~FPD--p~Ka~~~L~kf~kLnD~Riyk-LLk-------~~id--~ 553 (1670)
+..+.-.+..+.+.-+..+--+|.- .+. -.-+...+..+.++... ++. +++ ++++ +
T Consensus 226 ----------l~~y~p~d~~ea~~i~~r~~p~Lqh-~n~avvlsavKv~l~~~~~~~~-~~~~~~~K~~~pl~tlls~~~ 293 (734)
T KOG1061|consen 226 ----------LAEYVPKDSREAEDICERLTPRLQH-ANSAVVLSAVKVILQLVKYLKQ-VNELLFKKVAPPLVTLLSSES 293 (734)
T ss_pred ----------HHhcCCCCchhHHHHHHHhhhhhcc-CCcceEeehHHHHHHHHHHHHH-HHHHHHHHhcccceeeecccc
Confidence 1111111111111111111111100 000 00111222222221111 111 111 1222 2
Q ss_pred CCCHHHHHHHHHHHHHHhc---CC-Cch----H--HHHHHHHHhhhccccChhHHHHHHHHHHhhcccchhhhHHHHHHH
Q 000321 554 NTSFDQAFTGRDDLLKILG---AK-HRL----Y--DFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDI 623 (1670)
Q Consensus 554 ~td~~t~~~a~~ELlkkL~---~~-~~l----~--e~l~~Ll~R~S~li~Nks~V~~LL~~v~~~~~~~~~~~~~~a~eL 623 (1670)
+..|--++|+.--+.++-+ .+ ..+ . -+++..-..+-..+.|.+++.+++..+.......+..+...+.+-
T Consensus 294 e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIra 373 (734)
T KOG1061|consen 294 EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRA 373 (734)
T ss_pred hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHH
Confidence 3445555555444433322 11 000 0 134444556777788999999999988776555555677778888
Q ss_pred HHHHHhhCCcCccccHHHHHHHHhhccccchHHHHHHHHHhhcc
Q 000321 624 LGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGT 667 (1670)
Q Consensus 624 L~~IS~~~P~lFk~~v~~Li~lL~~~~~~~~~~aLkiLak~~k~ 667 (1670)
+-.++...+.. -+++..|.+++.-.-..++.+++.++..+...
T Consensus 374 ig~~aik~e~~-~~cv~~lLell~~~~~yvvqE~~vvi~dilRk 416 (734)
T KOG1061|consen 374 IGRLAIKAEQS-NDCVSILLELLETKVDYVVQEAIVVIRDILRK 416 (734)
T ss_pred hhhhhhhhhhh-hhhHHHHHHHHhhcccceeeehhHHHHhhhhc
Confidence 88888888888 77899999999975555677777777766443
No 44
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=94.64 E-value=0.82 Score=52.05 Aligned_cols=102 Identities=19% Similarity=0.118 Sum_probs=65.8
Q ss_pred hhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHH-HHHHHhhhcCCChhHHHHHHHHhHHHHhcCCC--C---C
Q 000321 257 PYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSV-FSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPS--R---A 330 (1670)
Q Consensus 257 P~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~-w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~--~---~ 330 (1670)
|.|=.-+......+|..|..+|-.|+..-+ -++.+ ......-..++++.||..+++++..++...+. . .
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 333334445667788888888888886422 12344 45555567888899999999888888877761 1 1
Q ss_pred C--hHHHHHHHHhhhCCChhHHHHHHHHHHHHhhh
Q 000321 331 D--APQILTALCDRLLDFDENVRKQVVAVICDVAC 363 (1670)
Q Consensus 331 ~--~~eii~~L~~rL~D~DEkVR~aaVkai~~la~ 363 (1670)
. ...+++.+...+.|++..||.++-.++..+..
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 1 24688999999999999999998888877643
No 45
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.47 E-value=0.49 Score=60.40 Aligned_cols=182 Identities=19% Similarity=0.185 Sum_probs=120.6
Q ss_pred HHHHHHHHHHH-Hhcccc-cccHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCCCCCCCC
Q 000321 159 VLSSMQTIMIV-LLEESE-DIQEDLLVILLSALGRNK---NDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHS 233 (1670)
Q Consensus 159 V~~~m~~IL~~-vIeEse-~vp~~vLd~IL~~l~~~~---~~~a~~lA~~v~~~~~dkL~~~I~qyf~~il~~~~~~~~~ 233 (1670)
+......|+++ |+.... .-.+++|..+...|..+. -..|+.--..||+..++.++..+.. .
T Consensus 105 lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~--------------r 170 (885)
T KOG2023|consen 105 LIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLT--------------R 170 (885)
T ss_pred HHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhccc--------------C
Confidence 33344444444 444322 356888888888875432 2378877788999888766654320 0
Q ss_pred cchHHHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHH
Q 000321 234 HIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRM 313 (1670)
Q Consensus 234 ~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~ 313 (1670)
. |--.||-+=.-.++..+.+|..|+..+-..+-....++...-..--....-+.+|.+|+||.
T Consensus 171 p-----------------l~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk 233 (885)
T KOG2023|consen 171 P-----------------LNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRK 233 (885)
T ss_pred c-----------------hHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHH
Confidence 0 11122333333456789999999999998876654333322222222334567999999999
Q ss_pred HHHHHhHHHHhcCCCC--CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHH
Q 000321 314 SVLEHVKSCLLTDPSR--ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETV 374 (1670)
Q Consensus 314 ~~v~~~~~iL~~~p~~--~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~Vs~elL 374 (1670)
.+..+...+|..+|++ .....|++++..+-.|+||.|-++||+-.-.+|... ++.++|
T Consensus 234 ~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqp---i~~~~L 293 (885)
T KOG2023|consen 234 NVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQP---ICKEVL 293 (885)
T ss_pred HHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCc---CcHHHH
Confidence 9999999988888763 223589999999999999999999998876666544 555555
No 46
>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix. The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. The domain is essential for the recruitment of proteins to double stranded breaks in DNA, which is mediated by interaction with methylated Lys 79 of histone H3 []. ; PDB: 3LGL_A 1XNI_B 3LGF_A 2G3R_A 2IG0_A 3LH0_A 1SSF_A.
Probab=94.39 E-value=0.069 Score=55.02 Aligned_cols=46 Identities=30% Similarity=0.435 Sum_probs=35.8
Q ss_pred CCccccceEEEecCCCCceEEEEEEEecCCCCeeEEEccCCcceeee
Q 000321 1368 IEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLR 1414 (1670)
Q Consensus 1368 ~~~lvG~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdDGd~E~l~ 1414 (1670)
+.++||.||---|-+++-||.|+|+. +....+.+|..|||.+..|.
T Consensus 1 ~~~~iG~rV~AkWS~n~yyY~G~I~~-~~~~~kykv~FdDG~~~~v~ 46 (122)
T PF09038_consen 1 GSSFIGLRVFAKWSDNGYYYPGKITS-DKGKNKYKVLFDDGYECRVL 46 (122)
T ss_dssp ---STT-EEEEESSTTSEEEEEEEEE-EETTTEEEEEETTS-EEEEE
T ss_pred CCcccccEEEEEEccCCcccCceEee-cCCCCeEEEEecCCccceec
Confidence 35799999999999777779999999 57778999999999987553
No 47
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.38 E-value=0.53 Score=63.60 Aligned_cols=125 Identities=15% Similarity=0.126 Sum_probs=89.2
Q ss_pred HHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHH-HHH
Q 000321 299 EFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETV-KLV 377 (1670)
Q Consensus 299 ~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~Vs~elL-~~l 377 (1670)
.|+-|+.|+.|.||+.|++..+-.+.+-|+.-...-.++++.=.|.|-...||+.+|+++.-+-...-..-..+++ .-.
T Consensus 291 VFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRF 370 (1048)
T KOG2011|consen 291 VFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRF 370 (1048)
T ss_pred eeeeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 6788999999999999999999888888864333457889999999999999999999998876653222222221 112
Q ss_pred HHh-----hccCChhHHHHHHHHHHHHHHHHhhhccCCCcchhccccchHHHhhhhccCCCC
Q 000321 378 AER-----LRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFG 434 (1670)
Q Consensus 378 aeR-----~RDKK~~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~~wIPs~IL~~~Y~nD~~ 434 (1670)
.+| .||-.+.||..++..+-.++..-+.. ... -..|.+|+|+.+.+
T Consensus 371 K~RIVeMadrd~~~~Vrav~L~~~~~~~~~g~L~-------d~d----i~~Vy~Li~d~~r~ 421 (1048)
T KOG2011|consen 371 KDRIVEMADRDRNVSVRAVGLVLCLLLSSSGLLS-------DKD----ILIVYSLIYDSNRR 421 (1048)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHhcccccC-------hhH----HHHHHHHHhccCcc
Confidence 222 58888999999998887776643211 111 23457778877655
No 48
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.18 E-value=6.9 Score=52.20 Aligned_cols=129 Identities=13% Similarity=0.162 Sum_probs=99.2
Q ss_pred ccCCChHHHHHHHH-HHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHh
Q 000321 263 LLTDQLDTRLKAVG-LVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCD 341 (1670)
Q Consensus 263 L~sed~~~Rl~At~-llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~eii~~L~~ 341 (1670)
|.+-+...|+.|.+ ++..|..+. ++..=+|++-+.|..| +++++..+=-+...+-..+|. ++-..++.+.+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~--dmssLf~dViK~~~tr----d~ElKrL~ylYl~~yak~~P~--~~lLavNti~k 99 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGE--DMSSLFPDVIKNVATR----DVELKRLLYLYLERYAKLKPE--LALLAVNTIQK 99 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHhccCHH--HHHHHHHHHHh
Confidence 66777888888875 567777654 5777788888888844 788887776666665567773 34455689999
Q ss_pred hhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000321 342 RLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 402 (1670)
Q Consensus 342 rL~D~DEkVR~aaVkai~~la~~~l~~Vs~elL~~laeR~RDKK~~VR~eAm~~La~LY~~ 402 (1670)
=|.|+++.+|..|+.+++.+-.. .+-+-++..+..-+-|+.+-||+.|+-+++++|+.
T Consensus 100 Dl~d~N~~iR~~AlR~ls~l~~~---el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l 157 (757)
T COG5096 100 DLQDPNEEIRGFALRTLSLLRVK---ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL 157 (757)
T ss_pred hccCCCHHHHHHHHHHHHhcChH---HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc
Confidence 99999999999987777654433 33445678889999999999999999999999973
No 49
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.05 E-value=0.56 Score=56.14 Aligned_cols=97 Identities=19% Similarity=0.246 Sum_probs=77.1
Q ss_pred ccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCC-----------CC
Q 000321 263 LLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR-----------AD 331 (1670)
Q Consensus 263 L~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~-----------~~ 331 (1670)
+++.+..+|..|++.|| +++--+-.++.+|=.+|...+.+ | ...||+.+++.+-+++..|... ..
T Consensus 36 v~~~~~~vR~~al~cLG-l~~Lld~~~a~~~l~l~~~~~~~--~-~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~ 111 (298)
T PF12719_consen 36 VQSSDPAVRELALKCLG-LCCLLDKELAKEHLPLFLQALQK--D-DEEVKITALKALFDLLLTHGIDIFDSESDNDESVD 111 (298)
T ss_pred hcCCCHHHHHHHHHHHH-HHHHhChHHHHHHHHHHHHHHHh--C-CHHHHHHHHHHHHHHHHHcCchhccchhccCccch
Confidence 55689999999999999 56555557888776666666633 5 9999999999999999988421 12
Q ss_pred hHHHHHHHHhhhCCChhHHHHHHHHHHHHhhh
Q 000321 332 APQILTALCDRLLDFDENVRKQVVAVICDVAC 363 (1670)
Q Consensus 332 ~~eii~~L~~rL~D~DEkVR~aaVkai~~la~ 363 (1670)
...+.+.|..-|.+.++.||..||+.+|.+-.
T Consensus 112 ~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 112 SKSLLKILTKFLDSENPELQAIAVEGLCKLLL 143 (298)
T ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 34678888888998899999999999988654
No 50
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.05 E-value=4.2 Score=52.52 Aligned_cols=134 Identities=19% Similarity=0.241 Sum_probs=90.9
Q ss_pred HHHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHH
Q 000321 237 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVL 316 (1670)
Q Consensus 237 ~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v 316 (1670)
.-..+..|-...|.+.+--+-++..-|.++.-..|-..++..|.+.... . .| + +|+
T Consensus 282 islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~----~--------------~d--~----qm~ 337 (1128)
T COG5098 282 ISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHF----K--------------KD--G----QMV 337 (1128)
T ss_pred HHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH----h--------------cc--h----hhH
Confidence 3445666667777777776666666666666666666666666554421 0 01 1 455
Q ss_pred HHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCC--CHHHHHHHHHhhccCChhHHHHHHH
Q 000321 317 EHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI--PVETVKLVAERLRDKSVLVKRYTME 394 (1670)
Q Consensus 317 ~~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~V--s~elL~~laeR~RDKK~~VR~eAm~ 394 (1670)
++.++- ...++.-|.+||.|+-.-+|..|++++..+--.....+ -.++.+.++.|+-||..-||+.|+.
T Consensus 338 e~~~~~---------~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaik 408 (1128)
T COG5098 338 EHYKQK---------LNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIK 408 (1128)
T ss_pred hhHHHH---------HHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 555442 24678888899999999999888877755433222222 3467889999999999999999999
Q ss_pred HHHHHHHHH
Q 000321 395 RLADIFRGC 403 (1670)
Q Consensus 395 ~La~LY~~~ 403 (1670)
.+++|.-.+
T Consensus 409 l~SkLL~~H 417 (1128)
T COG5098 409 LCSKLLMRH 417 (1128)
T ss_pred HHHHHHhcC
Confidence 999987654
No 51
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=93.77 E-value=23 Score=44.58 Aligned_cols=305 Identities=16% Similarity=0.204 Sum_probs=166.6
Q ss_pred chHHHHHHHHHHHHhhcCCCCCCChh--HHHH-HHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhh-hheeeccCC-ch
Q 000321 63 DVKLLVATCICEITRITAPEAPYSDD--VLKD-IFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYR-SCVVMLDLE-CD 137 (1670)
Q Consensus 63 ~Vra~vAcCLadIlRI~APdaPytd~--~Lkd-IF~lfi~qf~~L~d~~~p~f~q~~~LLe~La~vk-s~vl~~DL~-~~ 137 (1670)
+.-..+.-||..++.-..-+.++.+. ...+ |...+++.+-...+.+.. ....+|+.++.+= .+|-.++.+ .+
T Consensus 58 ~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~---~~~~~L~~~~~l~~~iv~~l~~~~q~ 134 (415)
T PF12460_consen 58 DYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSD---LDDRVLELLSRLINLIVRSLSPEKQQ 134 (415)
T ss_pred HHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccc---cchHHHHHHHHHHHHHHHhCCHHHHH
Confidence 33333444555555554444434432 2222 444444433222222222 4456677776543 333445555 57
Q ss_pred HHHHHHHHHHHhhh-----cC------CChhhHHHHHHHHHHHHhccccccc--HHHHHHHHHHhcCCCcH----HHHHH
Q 000321 138 ELVNEMYSTFFAVA-----SD------DHPESVLSSMQTIMIVLLEESEDIQ--EDLLVILLSALGRNKND----TARRL 200 (1670)
Q Consensus 138 ~Li~~lF~~ff~~v-----~~------~~~~~V~~~m~~IL~~vIeEse~vp--~~vLd~IL~~l~~~~~~----~a~~l 200 (1670)
+++.++|..|+... .. ..+.........|+..+=-+. .+| .++++-++......... ++.++
T Consensus 135 ~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~-~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~ 213 (415)
T PF12460_consen 135 EILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDV-SLPDLEELLQSLLNLALSSEDEFSRLAALQL 213 (415)
T ss_pred HHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCccc-CccCHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 88999999998110 00 123344444444444332222 233 23455454433222222 55567
Q ss_pred HHHHHHHh--hhhhHHHHHHHHHHhhcCCCCCCCCcchHHH--------HHHHHHhhCchhhhhhhhhhcccccCCChHH
Q 000321 201 AMNVIEQC--AGKLEAGIKQFLVSSMSGDSRPGHSHIDYHE--------VIYDVYRCSPQILSGVVPYLTGELLTDQLDT 270 (1670)
Q Consensus 201 A~~v~~~~--~dkL~~~I~qyf~~il~~~~~~~~~~~~~h~--------Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~ 270 (1670)
..-++|++ .+.+...+..++..+ .............+ |+.+.+..+.+++...+..| .+ ..+
T Consensus 214 la~LvNK~~~~~~l~~~l~~~~~~~--~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL----~~--~~~ 285 (415)
T PF12460_consen 214 LASLVNKWPDDDDLDEFLDSLLQSI--SSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELL----SS--PEL 285 (415)
T ss_pred HHHHHcCCCChhhHHHHHHHHHhhh--cccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHh----CC--hhh
Confidence 77788874 444666666665554 11111111112222 22222223333344433333 22 778
Q ss_pred HHHHHHHHHHhhcC-CC-------CCc-----hhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCC---CChHH
Q 000321 271 RLKAVGLVGDLFAV-PG-------SAN-----NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR---ADAPQ 334 (1670)
Q Consensus 271 Rl~At~llG~mfs~-~~-------~~~-----~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~---~~~~e 334 (1670)
...|.+.+|-+++. ++ ++. =+-|-.+....+..+...+..+|..++.+...+|.+-|.. .+..+
T Consensus 286 g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~ 365 (415)
T PF12460_consen 286 GQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPT 365 (415)
T ss_pred HHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 99999999999988 32 110 1234556667788888888889999999999999877742 34567
Q ss_pred HHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHh
Q 000321 335 ILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAER 380 (1670)
Q Consensus 335 ii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~Vs~elL~~laeR 380 (1670)
|+.-|.+.|-=+|..||.++..++..+.......+.+ -+.++..|
T Consensus 366 LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~-hl~sLI~~ 410 (415)
T PF12460_consen 366 LLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISE-HLSSLIPR 410 (415)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHH-HHHHHHHH
Confidence 8888888887788889999999998877766444443 23344333
No 52
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=93.77 E-value=0.088 Score=52.60 Aligned_cols=106 Identities=12% Similarity=0.070 Sum_probs=53.9
Q ss_pred hhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchh-hcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCC--
Q 000321 255 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE-QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRAD-- 331 (1670)
Q Consensus 255 ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~-~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~-- 331 (1670)
++|.|-.-|...+..+|..|..+|+.|.......... .....+..++.-++|.++.||..++....++....+....
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 6677777777888999999999999988762100000 0113344444444444555555555555444332221000
Q ss_pred -hHHHHHHHHhhhCCChhHHHHHHHHHHHH
Q 000321 332 -APQILTALCDRLLDFDENVRKQVVAVICD 360 (1670)
Q Consensus 332 -~~eii~~L~~rL~D~DEkVR~aaVkai~~ 360 (1670)
...+++.|...|.+.|..||..++.+++.
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~ 117 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSN 117 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 01133444444444455555544444433
No 53
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=93.68 E-value=46 Score=49.48 Aligned_cols=142 Identities=11% Similarity=0.087 Sum_probs=92.8
Q ss_pred hhhhcccccCCChHHHHHHHHHHHHhhcCCCCCch-----hhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCC
Q 000321 256 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANN-----EQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRA 330 (1670)
Q Consensus 256 iP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~-----~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~ 330 (1670)
++.|-.-|...+.+++..|+..|..+-.... +.. .---+..-.||+. -++.+|...+.....+-..+....
T Consensus 406 ik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~-e~~~aIi~~ggIp~LV~LL~s---~s~~iQ~~A~~~L~nLa~~ndenr 481 (2102)
T PLN03200 406 KKVLVGLITMATADVQEELIRALSSLCCGKG-GLWEALGGREGVQLLISLLGL---SSEQQQEYAVALLAILTDEVDESK 481 (2102)
T ss_pred hhhhhhhhccCCHHHHHHHHHHHHHHhCCCH-HHHHHHHHcCcHHHHHHHHcC---CCHHHHHHHHHHHHHHHcCCHHHH
Confidence 3344445667778999999999988775532 110 1112344455554 467788777766665433332100
Q ss_pred C---hHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcC---CC-CHHHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 000321 331 D---APQILTALCDRLLDFDENVRKQVVAVICDVACHALN---SI-PVETVKLVAERLRDKSVLVKRYTMERLADIFR 401 (1670)
Q Consensus 331 ~---~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~---~V-s~elL~~laeR~RDKK~~VR~eAm~~La~LY~ 401 (1670)
. ....+..|...|..++.++|.+||-+++.++...-. .| ....+..|.+.+++....+|+.|..+|++|-.
T Consensus 482 ~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~ 559 (2102)
T PLN03200 482 WAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVR 559 (2102)
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 0 013467888889999999999999999998873211 12 22345567778888889999999999999854
No 54
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.53 E-value=1.3 Score=60.16 Aligned_cols=151 Identities=15% Similarity=0.180 Sum_probs=107.2
Q ss_pred hHHHHHHHHHh---hCc--hhhhhhhhhhcccc----cCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcC
Q 000321 236 DYHEVIYDVYR---CSP--QILSGVVPYLTGEL----LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTD 306 (1670)
Q Consensus 236 ~~h~Li~eL~~---~~P--~lL~~ViP~Le~EL----~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D 306 (1670)
+.|++|..+.. ..| .+|....|.+..-- ...++.++..||-.||+|.-- ++.|-..|-+++-.-+.+.
T Consensus 896 d~~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i-Sa~fces~l~llftimeks-- 972 (1251)
T KOG0414|consen 896 DLADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI-SAEFCESHLPLLFTIMEKS-- 972 (1251)
T ss_pred hHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcC--
Confidence 46666665543 234 56666777776644 345699999999999999865 3456555444444444432
Q ss_pred CChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCCh
Q 000321 307 RIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSV 386 (1670)
Q Consensus 307 ~s~~VR~~~v~~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~Vs~elL~~laeR~RDKK~ 386 (1670)
.+|-||.-+|=.++++...-|.. +......|-.||+|.+..||..|+.++.-+.....-.|-. .+..+|--+-|-..
T Consensus 973 p~p~IRsN~VvalgDlav~fpnl--ie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKG-ql~eMA~cl~D~~~ 1049 (1251)
T KOG0414|consen 973 PSPRIRSNLVVALGDLAVRFPNL--IEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKG-QLSEMALCLEDPNA 1049 (1251)
T ss_pred CCceeeecchheccchhhhcccc--cchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcc-cHHHHHHHhcCCcH
Confidence 57899999999999988887753 3467799999999999999999999998776655433322 24566777888887
Q ss_pred hHHHHH
Q 000321 387 LVKRYT 392 (1670)
Q Consensus 387 ~VR~eA 392 (1670)
.||.-|
T Consensus 1050 ~IsdlA 1055 (1251)
T KOG0414|consen 1050 EISDLA 1055 (1251)
T ss_pred HHHHHH
Confidence 766544
No 55
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=93.34 E-value=7.1 Score=49.69 Aligned_cols=303 Identities=14% Similarity=0.166 Sum_probs=169.1
Q ss_pred HHHHHHhhcCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHH-HHHHHhhhhheeeccCCchHHHHHHHHHHHh
Q 000321 71 CICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVI-LETLAKYRSCVVMLDLECDELVNEMYSTFFA 149 (1670)
Q Consensus 71 CLadIlRI~APdaPytd~~LkdIF~lfi~qf~~L~d~~~p~f~q~~~L-Le~La~vks~vl~~DL~~~~Li~~lF~~ff~ 149 (1670)
.|+.|+|+.+----|...+.+.+|--+..-|.+ .++|..|++|+ ++-|+.+--=|+| -.=...=|
T Consensus 44 lls~l~yll~tge~f~e~~at~lff~i~KlFQh----kd~~Lrq~VY~aIkelS~~tedvlm----------~tssiMkD 109 (898)
T COG5240 44 LLSNLFYLLSTGELFPEATATNLFFAILKLFQH----KDLYLRQCVYSAIKELSKLTEDVLM----------GTSSIMKD 109 (898)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHhhcchhhhH----------HHHHHHHh
Confidence 468899999888888888899888887777753 67889999886 4555544222221 11111111
Q ss_pred hhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHH-hcC---CCcH----HHHHH---HHHHHHHhhhhhHHHHHH
Q 000321 150 VASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSA-LGR---NKND----TARRL---AMNVIEQCAGKLEAGIKQ 218 (1670)
Q Consensus 150 ~v~~~~~~~V~~~m~~IL~~vIeEse~vp~~vLd~IL~~-l~~---~~~~----~a~~l---A~~v~~~~~dkL~~~I~q 218 (1670)
+.++-+.-+......-|..||++.-. +. ..-+|++ |.. .... .||.| +.+.+.+-....|.+|..
T Consensus 110 -~~~g~~~~~kp~AiRsL~~Vid~~tv-~~--~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~ 185 (898)
T COG5240 110 -LNGGVPDDVKPMAIRSLFSVIDGETV-YD--FERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLD 185 (898)
T ss_pred -hccCCccccccHHHHHHHHhcCcchh-hh--HHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhh
Confidence 12223333444444445555555321 11 1112211 111 0111 22322 111111111112222211
Q ss_pred ---HHHHhhcCC-CC-CCCCcc-hHH--HHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCch
Q 000321 219 ---FLVSSMSGD-SR-PGHSHI-DYH--EVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANN 290 (1670)
Q Consensus 219 ---yf~~il~~~-~~-~~~~~~-~~h--~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~ 290 (1670)
|=+ ..|. +. +....+ ++| .|+|++-|..--.++..+..+-..+...|-.--.+-++.+..++-. .+++.
T Consensus 186 l~q~p~--~~~n~gy~Pn~~~isqYHalGlLyq~kr~dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~-n~q~~ 262 (898)
T COG5240 186 LKQFPN--QHGNEGYEPNGNPISQYHALGLLYQSKRTDKMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKE-NSQAL 262 (898)
T ss_pred HhhCcC--ccCCcccCCCCChHHHHHHHHHHHHHhcccHHHHHHHHHHhhcccccccchhheehHHHHHHHHHh-ChHHH
Confidence 100 0111 11 111222 455 6799999988877777777776666555544445556666666655 34777
Q ss_pred hhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCC
Q 000321 291 EQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIP 370 (1670)
Q Consensus 291 ~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~Vs 370 (1670)
.+.....+.||+-.- ..|-++.....-.+-..|-......+.+..|+..|.-+.---|.+|...+.++|...++.|.
T Consensus 263 ~q~rpfL~~wls~k~---emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~ 339 (898)
T COG5240 263 LQLRPFLNSWLSDKF---EMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS 339 (898)
T ss_pred HHHHHHHHHHhcCcc---hhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceee
Confidence 888888889987543 34444444333332222322234457788999999999999999999999999998888775
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHH
Q 000321 371 VETVKLVAERLRDKSVLVKRYTMERLAD 398 (1670)
Q Consensus 371 ~elL~~laeR~RDKK~~VR~eAm~~La~ 398 (1670)
.-- ..+-..+-|-+..|-.+||++|-+
T Consensus 340 vcN-~evEsLIsd~Nr~IstyAITtLLK 366 (898)
T COG5240 340 VCN-KEVESLISDENRTISTYAITTLLK 366 (898)
T ss_pred ecC-hhHHHHhhcccccchHHHHHHHHH
Confidence 421 123455677777888888887754
No 56
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.32 E-value=0.21 Score=50.20 Aligned_cols=66 Identities=20% Similarity=0.169 Sum_probs=50.4
Q ss_pred HHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCC---CHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000321 333 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI---PVETVKLVAERLRDKSVLVKRYTMERLADI 399 (1670)
Q Consensus 333 ~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~V---s~elL~~laeR~RDKK~~VR~eAm~~La~L 399 (1670)
.+|++.+..++.|+|.+||..||+++..++...-..+ =.+++..|..++.|-...||..| +.|-++
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRL 94 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHH
Confidence 4788888889999999999999999988876443332 23567888889999999998877 555544
No 57
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.21 E-value=0.82 Score=50.68 Aligned_cols=84 Identities=19% Similarity=0.141 Sum_probs=69.7
Q ss_pred HHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHH
Q 000321 239 EVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEH 318 (1670)
Q Consensus 239 ~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~ 318 (1670)
-.+-.|..-.|.++-+.+|.|..-|..+++.+|..|...|.+++.. ++.+-.+.++..++.-..|.++.||.....+
T Consensus 10 ~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~ 86 (178)
T PF12717_consen 10 IALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DMIKVKGQLFSRILKLLVDENPEIRSLARSF 86 (178)
T ss_pred HHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---CceeehhhhhHHHHHHHcCCCHHHHHHHHHH
Confidence 3455666777888999999999999999999999999999998875 5777777888888888999999999888888
Q ss_pred hHHHHhc
Q 000321 319 VKSCLLT 325 (1670)
Q Consensus 319 ~~~iL~~ 325 (1670)
...++..
T Consensus 87 ~~e~~~~ 93 (178)
T PF12717_consen 87 FSELLKK 93 (178)
T ss_pred HHHHHHh
Confidence 8887766
No 58
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=92.52 E-value=12 Score=49.97 Aligned_cols=103 Identities=17% Similarity=0.129 Sum_probs=86.4
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHH-HH
Q 000321 296 VFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE-TV 374 (1670)
Q Consensus 296 ~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~Vs~e-lL 374 (1670)
.-+.|++-+.|.++.||...+.....+ ........++..+.+++.|+..-||..|+-+|..+-.-..+.++.. ..
T Consensus 93 avNti~kDl~d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~ 168 (757)
T COG5096 93 AVNTIQKDLQDPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLI 168 (757)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHH
Confidence 356788899999999999999887642 2223456778899999999999999999999988776667777777 77
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000321 375 KLVAERLRDKSVLVKRYTMERLADIFRG 402 (1670)
Q Consensus 375 ~~laeR~RDKK~~VR~eAm~~La~LY~~ 402 (1670)
..+.+.+.|-.+.|=..|+.+|..++..
T Consensus 169 ~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 169 DILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 7788999999999999999999999986
No 59
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=91.70 E-value=3.6 Score=53.08 Aligned_cols=110 Identities=24% Similarity=0.289 Sum_probs=88.6
Q ss_pred HHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHH
Q 000321 243 DVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSC 322 (1670)
Q Consensus 243 eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~i 322 (1670)
+.-...|+-|...++.|++-|+.-.+-.|.+|.+.+..+|-.+ +-+....+..-..-.+|..|++.-||...++.+..+
T Consensus 335 qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~-sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkL 413 (1128)
T COG5098 335 QMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLN-SKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKL 413 (1128)
T ss_pred hhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCc-ccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 3556678889999999999999999999999999999999875 467777778888888999999999999999999999
Q ss_pred HhcCCCCCC-----------------hHHHH---HHHHhhhCCChhHHHHH
Q 000321 323 LLTDPSRAD-----------------APQIL---TALCDRLLDFDENVRKQ 353 (1670)
Q Consensus 323 L~~~p~~~~-----------------~~eii---~~L~~rL~D~DEkVR~a 353 (1670)
|+.||-..+ +.++. +.++++|.|.+..|-..
T Consensus 414 L~~HPF~~~h~~~l~~~~wek~L~~~E~qlNslk~~~qe~l~D~E~Eveqd 464 (1128)
T COG5098 414 LMRHPFASEHGSQLRLTLWEKNLGSAENQLNSLKSGLQETLCDGEKEVEQD 464 (1128)
T ss_pred HhcCChhhhccchhhhHHHHhhcchhHhHhhccchhhhccccchHHhhhhh
Confidence 999984211 11222 35566778887777643
No 60
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=91.63 E-value=0.25 Score=39.08 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=23.0
Q ss_pred HHHHHHhhhCCChhHHHHHHHHHHHHhhh
Q 000321 335 ILTALCDRLLDFDENVRKQVVAVICDVAC 363 (1670)
Q Consensus 335 ii~~L~~rL~D~DEkVR~aaVkai~~la~ 363 (1670)
|++.|...+.|++++||.+|+.+++.++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 46778888889999999999998887764
No 61
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=91.46 E-value=9.5 Score=45.80 Aligned_cols=125 Identities=18% Similarity=0.225 Sum_probs=82.5
Q ss_pred HHHHHhhcCCCCCchhhcH--HHHHHHHhh-hcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHH
Q 000321 276 GLVGDLFAVPGSANNEQFH--SVFSEFLKR-LTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRK 352 (1670)
Q Consensus 276 ~llG~mfs~~~~~~~~~y~--~~w~~fL~R-~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~ 352 (1670)
..++.|+......+..... +++..++-. ..-.++.||..-+++.+-+-+-+. ..+.+-+.-+...+..-++.||.
T Consensus 5 ~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~--~~a~~~l~l~~~~~~~~~~~v~~ 82 (298)
T PF12719_consen 5 SITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK--ELAKEHLPLFLQALQKDDEEVKI 82 (298)
T ss_pred HHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHhCCHHHHH
Confidence 3445555443322222222 667776622 333467999999999986555443 33455555555555444999999
Q ss_pred HHHHHHHHhhhhh-cC---CCC--------HHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000321 353 QVVAVICDVACHA-LN---SIP--------VETVKLVAERLRDKSVLVKRYTMERLADIFRG 402 (1670)
Q Consensus 353 aaVkai~~la~~~-l~---~Vs--------~elL~~laeR~RDKK~~VR~eAm~~La~LY~~ 402 (1670)
.++++++|+.... +. .-+ ..+++.+..-+.+-...||..|.+++++|+-.
T Consensus 83 ~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 83 TALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred HHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 9999999998632 22 222 24667777777777889999999999998875
No 62
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.11 E-value=8.8 Score=50.77 Aligned_cols=235 Identities=18% Similarity=0.228 Sum_probs=131.9
Q ss_pred hhhcCCCcchHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhcc-CCCCCCCCChhhHHHHHHHHHhhhhheeecc
Q 000321 55 VLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFS-GLKDTGGPSFGRRVVILETLAKYRSCVVMLD 133 (1670)
Q Consensus 55 ~LL~HkD~~Vra~vAcCLadIlRI~APdaPytd~~LkdIF~lfi~qf~-~L~d~~~p~f~q~~~LLe~La~vks~vl~~D 133 (1670)
+||+|.|.-||==++.|..-+.|. +|+ .-+.|+-.|. .|.+.+.+-..--+++ |.-||.
T Consensus 149 ~Ll~~~~~~irKKA~Lca~r~irK-~P~----------l~e~f~~~~~~lL~ek~hGVL~~~l~l---------~~e~c~ 208 (866)
T KOG1062|consen 149 RLLQHRDPYIRKKAALCAVRFIRK-VPD----------LVEHFVIAFRKLLCEKHHGVLIAGLHL---------ITELCK 208 (866)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHc-Cch----------HHHHhhHHHHHHHhhcCCceeeeHHHH---------HHHHHh
Confidence 678888888888888888888886 443 2233333333 2333232221111222 222222
Q ss_pred CCchHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHhcc-------cccccHHHHHHH-H---HHhcCCCcHHHHHHHH
Q 000321 134 LECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEE-------SEDIQEDLLVIL-L---SALGRNKNDTARRLAM 202 (1670)
Q Consensus 134 L~~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vIeE-------se~vp~~vLd~I-L---~~l~~~~~~~a~~lA~ 202 (1670)
...+ ... +-+++...+..||..++.- ...||...|.+- | ..++++..
T Consensus 209 ~~~~-----~l~---------~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~-------- 266 (866)
T KOG1062|consen 209 ISPD-----ALS---------YFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDA-------- 266 (866)
T ss_pred cCHH-----HHH---------HHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCc--------
Confidence 1100 000 1112344445555555543 123777777642 2 33455432
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhcCCCCCCCCcc-hHHHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHh
Q 000321 203 NVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHI-DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDL 281 (1670)
Q Consensus 203 ~v~~~~~dkL~~~I~qyf~~il~~~~~~~~~~~-~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~m 281 (1670)
..+|.|.--+.|-+++.=+. .+.+. =+||-+..|+.+- .+..+|.+|+..||+-
T Consensus 267 ----daSd~M~DiLaqvatntdss----kN~GnAILYE~V~TI~~I~-----------------~~~~LrvlainiLgkF 321 (866)
T KOG1062|consen 267 ----DASDLMNDILAQVATNTDSS----KNAGNAILYECVRTIMDIR-----------------SNSGLRVLAINILGKF 321 (866)
T ss_pred ----cHHHHHHHHHHHHHhccccc----ccchhHHHHHHHHHHHhcc-----------------CCchHHHHHHHHHHHH
Confidence 33455555566666542111 11111 1455555555442 3455666666666666
Q ss_pred hcCCC------------------CCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhh
Q 000321 282 FAVPG------------------SANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRL 343 (1670)
Q Consensus 282 fs~~~------------------~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~eii~~L~~rL 343 (1670)
+..++ .+.+++|+.+--+ ...|.++.||...+|..-.++..+- +..+++.|.+-|
T Consensus 322 L~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIle---CL~DpD~SIkrralELs~~lvn~~N----v~~mv~eLl~fL 394 (866)
T KOG1062|consen 322 LLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILE---CLKDPDVSIKRRALELSYALVNESN----VRVMVKELLEFL 394 (866)
T ss_pred hcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHH---HhcCCcHHHHHHHHHHHHHHhcccc----HHHHHHHHHHHH
Confidence 66553 2467888887654 5679999999999999876554332 457777777888
Q ss_pred CCChhHHHHHHHHHHHHhhh
Q 000321 344 LDFDENVRKQVVAVICDVAC 363 (1670)
Q Consensus 344 ~D~DEkVR~aaVkai~~la~ 363 (1670)
.-.|+.+|...+..|+.+|-
T Consensus 395 ~~~d~~~k~~~as~I~~laE 414 (866)
T KOG1062|consen 395 ESSDEDFKADIASKIAELAE 414 (866)
T ss_pred HhccHHHHHHHHHHHHHHHH
Confidence 77899999998888887664
No 63
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.94 E-value=18 Score=50.92 Aligned_cols=360 Identities=14% Similarity=0.208 Sum_probs=179.2
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhcch---------------hhhcCCCcchHHHHHHHH--HHHH
Q 000321 14 VLHFFLLNLQQAATCLSELNQSPPASILEAMQPFLNAIVQP---------------VLLKHQDKDVKLLVATCI--CEIT 76 (1670)
Q Consensus 14 ~~~~LlkrLk~l~~~Ls~~dQ~~~~~~~~sl~~~~~~Lv~~---------------~LL~HkD~~Vra~vAcCL--adIl 76 (1670)
..+++-.-|++|-=-|....=||.....+++..+-+.|+.. =|=+=.++.-|.--|||| +|++
T Consensus 988 a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl 1067 (1702)
T KOG0915|consen 988 AGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLL 1067 (1702)
T ss_pred HHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 34455556666666676665555544455555555555443 333448889888889986 5999
Q ss_pred hhcCCCCCCCh--hHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhheeeccCC----chHHHHHH-------
Q 000321 77 RITAPEAPYSD--DVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLE----CDELVNEM------- 143 (1670)
Q Consensus 77 RI~APdaPytd--~~LkdIF~lfi~qf~~L~d~~~p~f~q~~~LLe~La~vks~vl~~DL~----~~~Li~~l------- 143 (1670)
|= .|+++ +.|.+|+..+|+.-..+.+. --.--.-....|+ |.||-+||.. +.+.+.-+
T Consensus 1068 ~g----~~~~~~~e~lpelw~~~fRvmDDIKEs---VR~aa~~~~~~ls--Kl~vr~~d~~~~~~~~~~l~~iLPfLl~~ 1138 (1702)
T KOG0915|consen 1068 QG----RPFDQVKEKLPELWEAAFRVMDDIKES---VREAADKAARALS--KLCVRICDVTNGAKGKEALDIILPFLLDE 1138 (1702)
T ss_pred cC----CChHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH--HHHhhhcccCCcccHHHHHHHHHHHHhcc
Confidence 85 56665 56777777777655433321 1111122333333 3477777753 22222222
Q ss_pred -------------HHHHHhhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHh---------------------
Q 000321 144 -------------YSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSAL--------------------- 189 (1670)
Q Consensus 144 -------------F~~ff~~v~~~~~~~V~~~m~~IL~~vIeEse~vp~~vLd~IL~~l--------------------- 189 (1670)
..++.+++ +.-++.+..+..+..-.+++-.+.+.+.||..+--.+
T Consensus 1139 gims~v~evr~~si~tl~dl~-Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspm 1217 (1702)
T KOG0915|consen 1139 GIMSKVNEVRRFSIGTLMDLA-KSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPM 1217 (1702)
T ss_pred CcccchHHHHHHHHHHHHHHH-HhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcH
Confidence 12222222 1122334445555555555555555555555433221
Q ss_pred -------------------------------cCCCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCCCCCCCCcchHH
Q 000321 190 -------------------------------GRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYH 238 (1670)
Q Consensus 190 -------------------------------~~~~~~~a~~lA~~v~~~~~dkL~~~I~qyf~~il~~~~~~~~~~~~~h 238 (1670)
+-+....+..+-..+..+|..-|.|+.-.||.-++.|-........++.
T Consensus 1218 meTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kaf 1297 (1702)
T KOG0915|consen 1218 METINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAF 1297 (1702)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHH
Confidence 0001113344444555556666666666666655554211111111111
Q ss_pred -HHHHHHHhh-CchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHH--HHHhhhcCCChhHHHH
Q 000321 239 -EVIYDVYRC-SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFS--EFLKRLTDRIVAVRMS 314 (1670)
Q Consensus 239 -~Li~eL~~~-~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~--~fL~R~~D~s~~VR~~ 314 (1670)
.-.--|.++ .|+=-...+-.+-.++..+++..+..+..++.. |+....+...-|.+.+- .||.++.+ .-+.=-.
T Consensus 1298 AsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~-Ian~s~e~Lkn~asaILPLiFLa~~ee-~Ka~q~L 1375 (1702)
T KOG0915|consen 1298 ASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISN-IANYSQEMLKNYASAILPLIFLAMHEE-EKANQEL 1375 (1702)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHH-HHHhhHHHHHhhHHHHHHHHHHHHhHH-HHHHHHH
Confidence 111112222 443444444444455555666666777777777 55544344444544443 56666555 1111111
Q ss_pred HHHHhHHHHhcCCCC--CChHHHHHHHHhhh-CCChhHHHHHHHHHHHHhhhhhcCCCCHHH--------HHHHHHhhcc
Q 000321 315 VLEHVKSCLLTDPSR--ADAPQILTALCDRL-LDFDENVRKQVVAVICDVACHALNSIPVET--------VKLVAERLRD 383 (1670)
Q Consensus 315 ~v~~~~~iL~~~p~~--~~~~eii~~L~~rL-~D~DEkVR~aaVkai~~la~~~l~~Vs~el--------L~~laeR~RD 383 (1670)
|-+.--.+....-.+ -...+++..+|+-. .+.-.++|.++.+++..++......+|.+. +.++..|+=|
T Consensus 1376 w~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~~p~ilkl~~~ll~~L~GRiwd 1455 (1702)
T KOG0915|consen 1376 WNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAPIPVILKLALSLLDTLNGRIWD 1455 (1702)
T ss_pred HHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCChHHHHHHHHHHHHHhhccccc
Confidence 111111111000000 01235666666654 455599999999999888887777777543 3466666655
Q ss_pred CC
Q 000321 384 KS 385 (1670)
Q Consensus 384 KK 385 (1670)
=|
T Consensus 1456 GK 1457 (1702)
T KOG0915|consen 1456 GK 1457 (1702)
T ss_pred cH
Confidence 43
No 64
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.73 E-value=8.5 Score=50.75 Aligned_cols=258 Identities=19% Similarity=0.171 Sum_probs=145.1
Q ss_pred hhhcCCCcchHHHHHHHHHHH----HhhcCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhh-hhhe
Q 000321 55 VLLKHQDKDVKLLVATCICEI----TRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKY-RSCV 129 (1670)
Q Consensus 55 ~LL~HkD~~Vra~vAcCLadI----lRI~APdaPytd~~LkdIF~lfi~qf~~L~d~~~p~f~q~~~LLe~La~v-ks~v 129 (1670)
..|.||..-|-.=+|--++.+ -|+.+| .. -+.++|++. |....--..+-+|..+|-. =.-|
T Consensus 252 s~l~~K~emV~~EaArai~~l~~~~~r~l~p----av----s~Lq~flss------p~~~lRfaAvRtLnkvAm~~P~~v 317 (865)
T KOG1078|consen 252 SCLRHKSEMVIYEAARAIVSLPNTNSRELAP----AV----SVLQLFLSS------PKVALRFAAVRTLNKVAMKHPQAV 317 (865)
T ss_pred HHHhchhHHHHHHHHHHHhhccccCHhhcch----HH----HHHHHHhcC------cHHHHHHHHHHHHHHHHHhCCccc
Confidence 567888887776666665543 244455 22 234444432 2222212234455555532 2334
Q ss_pred eeccCCchHHHHHHHH--------HHHhhhcCCChhhHHHHHHHHHH---HHhcccccccHHHHHHHHHHhcCCCcHHHH
Q 000321 130 VMLDLECDELVNEMYS--------TFFAVASDDHPESVLSSMQTIMI---VLLEESEDIQEDLLVILLSALGRNKNDTAR 198 (1670)
Q Consensus 130 l~~DL~~~~Li~~lF~--------~ff~~v~~~~~~~V~~~m~~IL~---~vIeEse~vp~~vLd~IL~~l~~~~~~~a~ 198 (1670)
.+|.++-+.||.+.=+ +++. .+...+|...|-.|-. .|=+|.-.|--+-+..+...+.
T Consensus 318 ~~cN~elE~lItd~NrsIat~AITtLLK---TG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp-------- 386 (865)
T KOG1078|consen 318 TVCNLDLESLITDSNRSIATLAITTLLK---TGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFP-------- 386 (865)
T ss_pred cccchhHHhhhcccccchhHHHHHHHHH---hcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhcc--------
Confidence 5566654555543322 2232 2334556665555543 3444443343333333333332
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHH
Q 000321 199 RLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLV 278 (1670)
Q Consensus 199 ~lA~~v~~~~~dkL~~~I~qyf~~il~~~~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~ll 278 (1670)
+....+-.|+.++|-++++ .+-.....+.|..+-+..|+.=-.-+-.|..-. +|-+.+..||+.|
T Consensus 387 ------------~k~~~~m~FL~~~Lr~eGg-~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefI--EDce~~~i~~rIL 451 (865)
T KOG1078|consen 387 ------------RKHTVMMNFLSNMLREEGG-FEFKRAIVDAIIDIIEENPDSKERGLEHLCEFI--EDCEFTQIAVRIL 451 (865)
T ss_pred ------------HHHHHHHHHHHHHHHhccC-chHHHHHHHHHHHHHHhCcchhhHHHHHHHHHH--HhccchHHHHHHH
Confidence 2334445667777765322 122223567777777877775443333333222 4567788999999
Q ss_pred HHhhcCCCCCchhhcHHHHHHH-HhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHH
Q 000321 279 GDLFAVPGSANNEQFHSVFSEF-LKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAV 357 (1670)
Q Consensus 279 G~mfs~~~~~~~~~y~~~w~~f-L~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVka 357 (1670)
+.+--. | -....|+-|-.| .+|..=-+..||.+.|.++..|....+.. .+-|...|.++++|.|+.||-.|--.
T Consensus 452 hlLG~E-g--P~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l--~~sI~vllkRc~~D~DdevRdrAtf~ 526 (865)
T KOG1078|consen 452 HLLGKE-G--PKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVL--LPSILVLLKRCLNDSDDEVRDRATFY 526 (865)
T ss_pred HHHhcc-C--CCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCc--cccHHHHHHHHhcCchHHHHHHHHHH
Confidence 866543 2 123345555544 46777778999999999999999666543 34688999999999999999885433
No 65
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=90.53 E-value=0.17 Score=44.87 Aligned_cols=52 Identities=23% Similarity=0.206 Sum_probs=34.5
Q ss_pred hhHHHHHHHHhHHHHhcCCC--CCChHHHHHHHHhhhCCChhHHHHHHHHHHHH
Q 000321 309 VAVRMSVLEHVKSCLLTDPS--RADAPQILTALCDRLLDFDENVRKQVVAVICD 360 (1670)
Q Consensus 309 ~~VR~~~v~~~~~iL~~~p~--~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~ 360 (1670)
|.||...+...+.+....+. .....+++..|...|.|+++.||.+|+.+++.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 46777777777763333221 11234777888888888888888888777754
No 66
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=90.38 E-value=2 Score=42.99 Aligned_cols=87 Identities=21% Similarity=0.256 Sum_probs=70.4
Q ss_pred HHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCC-CCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHH
Q 000321 294 HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDP-SRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE 372 (1670)
Q Consensus 294 ~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p-~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~Vs~e 372 (1670)
..+|+.++.-.+|..++||..-+....+++.++. .......|+..+..-|.|+|.=|=++||++++.++...+ .+
T Consensus 2 ~~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p----~~ 77 (92)
T PF10363_consen 2 RETLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP----DE 77 (92)
T ss_pred hHHHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh----HH
Confidence 3678999999999999999999999999888765 334456788899999999999999999999999887663 34
Q ss_pred HHHHHHHhhccC
Q 000321 373 TVKLVAERLRDK 384 (1670)
Q Consensus 373 lL~~laeR~RDK 384 (1670)
++..|.++-.|+
T Consensus 78 vl~~L~~~y~~~ 89 (92)
T PF10363_consen 78 VLPILLDEYADP 89 (92)
T ss_pred HHHHHHHHHhCc
Confidence 565555555444
No 67
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=90.12 E-value=0.5 Score=55.77 Aligned_cols=49 Identities=22% Similarity=0.328 Sum_probs=40.0
Q ss_pred CccccceEEEecCCCCceEEEEEEEecCCCCeeEEEcc-CCcceeeecCc
Q 000321 1369 EDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYD-DEDVEVLRLDK 1417 (1670)
Q Consensus 1369 ~~lvG~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~Yd-DGd~E~l~L~~ 1417 (1670)
..=||-+|.-.|-.|..||.++|++.+...+.-.|+|. -|..|++.|..
T Consensus 68 ~WkvGd~C~A~~s~Dg~~Y~A~I~~i~~~~~~~~V~f~gYgn~e~v~l~d 117 (264)
T PF06003_consen 68 KWKVGDKCMAVYSEDGQYYPATIESIDEEDGTCVVVFTGYGNEEEVNLSD 117 (264)
T ss_dssp ---TT-EEEEE-TTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGG
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEcccCCeEeeehhh
Confidence 45599999999999999999999999999999999995 57788888853
No 68
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.99 E-value=0.44 Score=60.78 Aligned_cols=97 Identities=26% Similarity=0.291 Sum_probs=84.3
Q ss_pred HHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHH
Q 000321 298 SEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLV 377 (1670)
Q Consensus 298 ~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~Vs~elL~~l 377 (1670)
-+|+--+.|-=-+||.+.|.....+-.++|.. +..-+..|.+.++|-.+-||+.++.++.-++.+ -.+.++.|..+
T Consensus 376 GA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F--A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~--l~i~eeql~~i 451 (823)
T KOG2259|consen 376 GALVHGLEDEFYEVRRAAVASLCSLATSSPGF--AVRALDFLVDMFNDEIEVVRLKAIFALTMISVH--LAIREEQLRQI 451 (823)
T ss_pred ceeeeechHHHHHHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH--heecHHHHHHH
Confidence 56777778888899999999999988888876 447889999999999999999999999888877 56788999999
Q ss_pred HHhhccCChhHHHHHHHHHHH
Q 000321 378 AERLRDKSVLVKRYTMERLAD 398 (1670)
Q Consensus 378 aeR~RDKK~~VR~eAm~~La~ 398 (1670)
.+-+.|..+.||...-+.|+.
T Consensus 452 l~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 452 LESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHHHhcCHHHHHHHHHHHHh
Confidence 999999999999988777654
No 69
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=89.98 E-value=4.1 Score=53.51 Aligned_cols=128 Identities=17% Similarity=0.263 Sum_probs=77.3
Q ss_pred Cchhhhhhhhhhccccc----CCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhc---CCChhHHHHHHHHhH
Q 000321 248 SPQILSGVVPYLTGELL----TDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLT---DRIVAVRMSVLEHVK 320 (1670)
Q Consensus 248 ~P~lL~~ViP~Le~EL~----sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~---D~s~~VR~~~v~~~~ 320 (1670)
.+.+..-+++.|..+|. ..+...++.+.+.||.| +. |.+...++.-.. +.+..||++++.+..
T Consensus 480 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~-g~---------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr 549 (618)
T PF01347_consen 480 SRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL-GH---------PESIPVLLPYIEGKEEVPHFIRVAAIQALR 549 (618)
T ss_dssp -SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTT
T ss_pred chhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc-CC---------chhhHHHHhHhhhccccchHHHHHHHHHHH
Confidence 45566667777777666 45779999999999987 22 233344443333 559999999999988
Q ss_pred HHHhcCCCCCChHHHHHHHHhhhCCChh--HHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhh-ccCChhHHHHHHHHH
Q 000321 321 SCLLTDPSRADAPQILTALCDRLLDFDE--NVRKQVVAVICDVACHALNSIPVETVKLVAERL-RDKSVLVKRYTMERL 396 (1670)
Q Consensus 321 ~iL~~~p~~~~~~eii~~L~~rL~D~DE--kVR~aaVkai~~la~~~l~~Vs~elL~~laeR~-RDKK~~VR~eAm~~L 396 (1670)
.+....| ..+.+.|..-+.|..+ .||.||+-++-. . .-+..+|..++..+ .|+...|+......|
T Consensus 550 ~~~~~~~-----~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~---~---~P~~~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 550 RLAKHCP-----EKVREILLPIFMNTTEDPEVRIAAYLILMR---C---NPSPSVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp TGGGT-H-----HHHHHHHHHHHH-TTS-HHHHHHHHHHHHH---T------HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred HHhhcCc-----HHHHHHHHHHhcCCCCChhHHHHHHHHHHh---c---CCCHHHHHHHHHHHhhCchHHHHHHHHHhc
Confidence 7644333 2455666666666544 399997666522 1 13556788888877 778788887765543
No 70
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=89.67 E-value=0.6 Score=46.58 Aligned_cols=100 Identities=15% Similarity=0.110 Sum_probs=71.9
Q ss_pred HHhhhcCCChhHHHHHHHHhHHHHhcCCCC--C-ChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcC----CCCHH
Q 000321 300 FLKRLTDRIVAVRMSVLEHVKSCLLTDPSR--A-DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN----SIPVE 372 (1670)
Q Consensus 300 fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~--~-~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~----~Vs~e 372 (1670)
++.-..|.++.+|...+.+...+-...|.. . ....+++.|...|.|++.+||..++.+++.++..... .+...
T Consensus 12 l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 91 (120)
T cd00020 12 LVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAG 91 (120)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCC
Confidence 333444556788888888877755443321 0 0125677888889999999999999999999764321 12233
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHH
Q 000321 373 TVKLVAERLRDKSVLVKRYTMERLADI 399 (1670)
Q Consensus 373 lL~~laeR~RDKK~~VR~eAm~~La~L 399 (1670)
++..+.+.+.+....||+.|+..|+.|
T Consensus 92 ~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 92 GVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 677888999999999999999999876
No 71
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=89.55 E-value=13 Score=47.98 Aligned_cols=214 Identities=17% Similarity=0.199 Sum_probs=123.7
Q ss_pred cCCchHHHHHHHHHHH--hhhcC----CChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 000321 133 DLECDELVNEMYSTFF--AVASD----DHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARRLAMNVIE 206 (1670)
Q Consensus 133 DL~~~~Li~~lF~~ff--~~v~~----~~~~~V~~~m~~IL~~vIeEse~vp~~vLd~IL~~l~~~~~~~a~~lA~~v~~ 206 (1670)
+++..++|..||..|+ .+... --+..+..-+..+|.--+..+ ..++.++.+++..+-...+
T Consensus 267 ~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa-~~~~~~~~i~~~~l~~~~~------------ 333 (501)
T PF13001_consen 267 SLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAA-TSFPNILQIVFDGLYSDNT------------ 333 (501)
T ss_pred CCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHH-hCCccHHHHHhccccCCcc------------
Confidence 3566788999999988 32111 123345544555554433222 3456666666665532211
Q ss_pred HhhhhhHHHHHHHH---HHhhcCCCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhc----ccccCCChHHHHHHHHHHH
Q 000321 207 QCAGKLEAGIKQFL---VSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLT----GELLTDQLDTRLKAVGLVG 279 (1670)
Q Consensus 207 ~~~dkL~~~I~qyf---~~il~~~~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le----~EL~sed~~~Rl~At~llG 279 (1670)
..+++..--||+ ..++. |-=...+-.+.|.++...+|.++ ....+++...|..|=++||
T Consensus 334 --~~klk~~~l~F~~~~~~~~~------------~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG 399 (501)
T PF13001_consen 334 --NSKLKSLALQFIRGSSWIFK------------HISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLG 399 (501)
T ss_pred --ccccchhcchhhhcchHHhh------------hcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHH
Confidence 112222222222 11110 00011233567777788888884 3466789999999999999
Q ss_pred HhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCC-----hHHHHH-HHHhhhCCChhHHHHH
Q 000321 280 DLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRAD-----APQILT-ALCDRLLDFDENVRKQ 353 (1670)
Q Consensus 280 ~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~-----~~eii~-~L~~rL~D~DEkVR~a 353 (1670)
.+..... .+...--++..-+.....+-.++||..+-++...++.+-+.... ...... .+.....+..-.+|.+
T Consensus 400 ~L~~~~p-~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~ 478 (501)
T PF13001_consen 400 LLAKRAP-SLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYA 478 (501)
T ss_pred HHHccCc-ccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHH
Confidence 9887644 33433455555666677888999999999999887765432111 111122 2333345667779999
Q ss_pred HHHHHHHhhhhhcCCCCHHHHHH
Q 000321 354 VVAVICDVACHALNSIPVETVKL 376 (1670)
Q Consensus 354 aVkai~~la~~~l~~Vs~elL~~ 376 (1670)
||+-.. +|..+++++...+..
T Consensus 479 avk~an--~~fpf~d~~aR~i~i 499 (501)
T PF13001_consen 479 AVKYAN--ACFPFSDVPARYICI 499 (501)
T ss_pred HHHHHH--HhCCccchHHHHHHh
Confidence 888763 467777877665543
No 72
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=88.69 E-value=3.7 Score=51.26 Aligned_cols=173 Identities=13% Similarity=0.119 Sum_probs=117.8
Q ss_pred HHHh-hCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHH
Q 000321 243 DVYR-CSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKS 321 (1670)
Q Consensus 243 eL~~-~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~ 321 (1670)
.+|. +--++|..|+--|-. +++...|.+|.+.|++|+..+...|...---+-..+|.-..|-...|=....+.|-.
T Consensus 321 svWeq~f~~iL~~l~EvL~d---~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~ 397 (516)
T KOG2956|consen 321 SVWEQHFAEILLLLLEVLSD---SEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLT 397 (516)
T ss_pred hHHHHHHHHHHHHHHHHHcc---chhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 3564 344555555533322 478999999999999999988766666666677899999999999998888999888
Q ss_pred HHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhh----hhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHH
Q 000321 322 CLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVA----CHALNSIPVETVKLVAERLRDKSVLVKRYTMERLA 397 (1670)
Q Consensus 322 iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la----~~~l~~Vs~elL~~laeR~RDKK~~VR~eAm~~La 397 (1670)
+|.+|.-. .-+.-++.+++-.|+..=.++++....+. ...|..+=.+++=++.+=.---...||+.|+=+|-
T Consensus 398 ~las~~P~----~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLV 473 (516)
T KOG2956|consen 398 TLASHLPL----QCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLV 473 (516)
T ss_pred HHHhhCch----hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHH
Confidence 88876421 34556677777799998888887765432 23333333333334444445556789999999999
Q ss_pred HHHHHHhhhccCCCcchhccccchHHHhhh
Q 000321 398 DIFRGCCLRNFNGSINQNEFEWIPGKILRC 427 (1670)
Q Consensus 398 ~LY~~~~~~~~~~~~~~~~~~wIPs~IL~~ 427 (1670)
.+|+..=. ..-...+...++.-+++
T Consensus 474 amv~~vG~-----~~mePhL~~Lt~sk~~L 498 (516)
T KOG2956|consen 474 AMVNRVGM-----EEMEPHLEQLTSSKLNL 498 (516)
T ss_pred HHHHHHhH-----HhhhhHhhhccHHHHHH
Confidence 99997420 12223455556655544
No 73
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=88.53 E-value=17 Score=48.69 Aligned_cols=177 Identities=20% Similarity=0.198 Sum_probs=99.1
Q ss_pred cccHHHHHHHHhhccccchHHHHHHHHHhhcchhhhhh-cccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchH
Q 000321 636 GGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLA-ATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSL 714 (1670)
Q Consensus 636 k~~v~~Li~lL~~~~~~~~~~aLkiLak~~k~~~e~~~-~~~s~l~~~L~~lal~Gtp~qAKyAvr~Laa~~~~~~~~~~ 714 (1670)
++.+.-|+++|..++..+.-.++..|.+.+-+ .++-. -....+.+.|.++--.++...-.-|.++|..++-+.+....
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~ 367 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQ 367 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 45567899999877765555566677666532 22211 12446788899998888888888999999988877642210
Q ss_pred ---HHHHHHHHHhhhhcCCCchHHHHHHHHHhhc--ccccccchHHHHHHHHHhhhccccccCCCCCCCC-------CCc
Q 000321 715 ---SVLYKRLVDMLEEKTHLPAVLQSLGCIAQTA--MPVFETRESEIEEFIKSKILRCSNKIRNDTKACW-------DDR 782 (1670)
Q Consensus 715 ---~~L~~~L~~~L~~~~~l~t~L~sL~~Iaq~a--P~vfe~~~~eI~~fiik~ILl~~~~~~~~~~~~W-------~d~ 782 (1670)
.-++..|+..|.........|..|..|+... ...|.. ++.+.+|++-++..+.... ..+.-| ...
T Consensus 368 mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~--TdcIp~L~~~Ll~~~~~~v-~~eliaL~iNLa~~~r 444 (708)
T PF05804_consen 368 MVSLGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAY--TDCIPQLMQMLLENSEEEV-QLELIALLINLALNKR 444 (708)
T ss_pred HHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhh--cchHHHHHHHHHhCCCccc-cHHHHHHHHHHhcCHH
Confidence 1134455555553322223455555555542 344532 2356777777665433211 111111 000
Q ss_pred hhhHHHHHHHHHHHHHhhcCCCccccccchHHHHHHHHHhh
Q 000321 783 SELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSML 823 (1670)
Q Consensus 783 se~~~aKi~aLK~Lvn~ll~~~~~~~~~~i~~ll~lL~~il 823 (1670)
.....+.--+|+.|+.+.....+ ..+++++++|-
T Consensus 445 naqlm~~g~gL~~L~~ra~~~~D-------~lLlKlIRNiS 478 (708)
T PF05804_consen 445 NAQLMCEGNGLQSLMKRALKTRD-------PLLLKLIRNIS 478 (708)
T ss_pred HHHHHHhcCcHHHHHHHHHhccc-------HHHHHHHHHHH
Confidence 11111133457777777655433 45788988874
No 74
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.32 E-value=2.8 Score=53.99 Aligned_cols=111 Identities=16% Similarity=0.133 Sum_probs=83.1
Q ss_pred chhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCC
Q 000321 289 NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS 368 (1670)
Q Consensus 289 ~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~ 368 (1670)
+...-..+|+....=++|.++.||...++..-. | .+ ..-....+.+-..+-+-|.++.||.+||+.+.-++...+-.
T Consensus 192 ~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~-L-~e-g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~ 268 (823)
T KOG2259|consen 192 LTHDREHAARGLIYLEHDQDFRVRTHAVEGLLA-L-SE-GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAP 268 (823)
T ss_pred ccccHHHHHHHHHHHhcCCCcchHHHHHHHHHh-h-cc-cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCc
Confidence 444556788887777899999999998887533 1 22 21223355677788899999999999999998777655321
Q ss_pred C---------CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000321 369 I---------PVETVKLVAERLRDKSVLVKRYTMERLADIFRG 402 (1670)
Q Consensus 369 V---------s~elL~~laeR~RDKK~~VR~eAm~~La~LY~~ 402 (1670)
. -...+..+.+=++|..+.||.+|.+.||.+=+.
T Consensus 269 ~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~v 311 (823)
T KOG2259|consen 269 LERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQV 311 (823)
T ss_pred ccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHh
Confidence 1 123577999999999999999999999987665
No 75
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=88.03 E-value=0.45 Score=42.17 Aligned_cols=52 Identities=15% Similarity=0.109 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHhhhhhcC---CCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000321 348 ENVRKQVVAVICDVACHALN---SIPVETVKLVAERLRDKSVLVKRYTMERLADI 399 (1670)
Q Consensus 348 EkVR~aaVkai~~la~~~l~---~Vs~elL~~laeR~RDKK~~VR~eAm~~La~L 399 (1670)
+.||.+++.+++.++..... ..-.+++..|...++|-...||..|...||+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 47999999999876643322 23446788999999999999999999999875
No 76
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=87.61 E-value=1.2 Score=44.89 Aligned_cols=84 Identities=21% Similarity=0.205 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCC--CChHHHHHHHHhhhCCChh
Q 000321 271 RLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR--ADAPQILTALCDRLLDFDE 348 (1670)
Q Consensus 271 Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~--~~~~eii~~L~~rL~D~DE 348 (1670)
|..+.-.|+.+--+-+..+....+.+-..-|.-|.|.++.||....++..+|....... .--.+|..+|.+.+.|+|+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~ 82 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDE 82 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 44444445444322233455666788888899999999999999999999987654321 1125899999999999999
Q ss_pred HHHHHH
Q 000321 349 NVRKQV 354 (1670)
Q Consensus 349 kVR~aa 354 (1670)
.||.+|
T Consensus 83 ~Vr~~a 88 (97)
T PF12755_consen 83 NVRSAA 88 (97)
T ss_pred hHHHHH
Confidence 999985
No 77
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=87.49 E-value=3.7 Score=51.59 Aligned_cols=78 Identities=17% Similarity=0.022 Sum_probs=36.7
Q ss_pred cCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccC
Q 000321 305 TDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDK 384 (1670)
Q Consensus 305 ~D~s~~VR~~~v~~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~Vs~elL~~laeR~RDK 384 (1670)
.|.+|.||...+..++. +. . +-.+.|...|.|.|..||.++|.+++.+-.. +.+..|..-+.|.
T Consensus 127 ~~~~p~vR~aal~al~~----r~--~---~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-------~a~~~L~~al~d~ 190 (410)
T TIGR02270 127 AASEPPGRAIGLAALGA----HR--H---DPGPALEAALTHEDALVRAAALRALGELPRR-------LSESTLRLYLRDS 190 (410)
T ss_pred cCCChHHHHHHHHHHHh----hc--c---ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-------cchHHHHHHHcCC
Confidence 45555666555544432 00 0 1123344444466666666666665554321 1111122335566
Q ss_pred ChhHHHHHHHHHHH
Q 000321 385 SVLVKRYTMERLAD 398 (1670)
Q Consensus 385 K~~VR~eAm~~La~ 398 (1670)
...||..|+.+|+.
T Consensus 191 ~~~VR~aA~~al~~ 204 (410)
T TIGR02270 191 DPEVRFAALEAGLL 204 (410)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666666643
No 78
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=86.96 E-value=0.79 Score=39.20 Aligned_cols=39 Identities=28% Similarity=0.428 Sum_probs=29.2
Q ss_pred hHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHH
Q 000321 319 VKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAV 357 (1670)
Q Consensus 319 ~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVka 357 (1670)
...++...|.....+.+.+.+..||.|++..||.+||..
T Consensus 3 l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 3 LSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 345555666655556888888899999999999888765
No 79
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=86.74 E-value=1.1e+02 Score=39.66 Aligned_cols=51 Identities=29% Similarity=0.327 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccccchHHHHHHHHHhhc
Q 000321 616 FMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGG 666 (1670)
Q Consensus 616 ~~~~a~eLL~~IS~~~P~lFk~~v~~Li~lL~~~~~~~~~~aLkiLak~~k 666 (1670)
..-+|+++|+.+|..+|+.-..|-.++-.++.+.|-.+..-++-+|-+.|.
T Consensus 319 ~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt 369 (898)
T COG5240 319 LRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGT 369 (898)
T ss_pred HHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCc
Confidence 345789999999999999999888888888888887666667777766663
No 80
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=86.72 E-value=9.9 Score=52.11 Aligned_cols=164 Identities=16% Similarity=0.184 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHH
Q 000321 196 TARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAV 275 (1670)
Q Consensus 196 ~a~~lA~~v~~~~~dkL~~~I~qyf~~il~~~~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At 275 (1670)
..+..-+...+...|.+...|..+|.++... ++++ -++.+|...+
T Consensus 264 e~Ll~~r~etqe~~d~i~~mi~~if~sVFVH---------RYRD--------------------------V~~~IRaiCi 308 (1048)
T KOG2011|consen 264 ESLLMLRKETQEQQDEIESMINDIFDSVFVH---------RYRD--------------------------VDPDIRAICI 308 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhheeee---------eccc--------------------------CchHHHHHHH
Confidence 5556667777777788888888888776542 2222 3567899999
Q ss_pred HHHHHhhcCCCCCchhhcHHHHH--HHHhh----hcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhh-----hC
Q 000321 276 GLVGDLFAVPGSANNEQFHSVFS--EFLKR----LTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDR-----LL 344 (1670)
Q Consensus 276 ~llG~mfs~~~~~~~~~y~~~w~--~fL~R----~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~eii~~L~~r-----L~ 344 (1670)
+-||-- ++.||+.|. .||+= .+|+...||..+|+.+..+..+.-...-.....+-+.+| ..
T Consensus 309 qeLgiW--------i~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadr 380 (1048)
T KOG2011|consen 309 QELGIW--------IKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADR 380 (1048)
T ss_pred HHHHHH--------HHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhh
Confidence 999964 456776665 44443 589999999999999999877632222223445555555 36
Q ss_pred CChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHH-HHHHHh
Q 000321 345 DFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLAD-IFRGCC 404 (1670)
Q Consensus 345 D~DEkVR~aaVkai~~la~~~l~~Vs~elL~~laeR~RDKK~~VR~eAm~~La~-LY~~~~ 404 (1670)
|.+.-||....... +.......++.+-+..|...|=|-++.||+.|+..|-. ++..++
T Consensus 381 d~~~~Vrav~L~~~--~~~~~~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~~~~~a 439 (1048)
T KOG2011|consen 381 DRNVSVRAVGLVLC--LLLSSSGLLSDKDILIVYSLIYDSNRRVAVAAGEFLYKKLFERVA 439 (1048)
T ss_pred hcchhHHHHHHHHH--HHHhcccccChhHHHHHHHHHhccCcchHHHHHHHHHHHhhcccc
Confidence 77777877644332 33445667888888899999999999999999988755 444443
No 81
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=86.51 E-value=8 Score=52.31 Aligned_cols=150 Identities=16% Similarity=0.279 Sum_probs=106.2
Q ss_pred hhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCc----------------------------------h-----
Q 000321 250 QILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSAN----------------------------------N----- 290 (1670)
Q Consensus 250 ~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~----------------------------------~----- 290 (1670)
+++..+-|.++.++.+.+=..|..|++-|...+..++... +
T Consensus 249 di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~ 328 (815)
T KOG1820|consen 249 DILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRP 328 (815)
T ss_pred hhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcch
Confidence 6788899999999999999999999999999998765111 1
Q ss_pred --hhc-HHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhh-hhc
Q 000321 291 --EQF-HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVAC-HAL 366 (1670)
Q Consensus 291 --~~y-~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~-~~l 366 (1670)
..| ...+..+|.|+.|+-+.+|-..+.++-.++.+.+ ...+.+++..-+.+.-..+|-..-..+...-. ...
T Consensus 329 ~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~----l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 329 LFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP----LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred hhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence 111 4456778888888888888888888877776544 23566777777777778877774333322111 111
Q ss_pred CCCCH----HHHHHHHHhhccCChhHHHHHHHHHHHHHHHH
Q 000321 367 NSIPV----ETVKLVAERLRDKSVLVKRYTMERLADIFRGC 403 (1670)
Q Consensus 367 ~~Vs~----elL~~laeR~RDKK~~VR~eAm~~La~LY~~~ 403 (1670)
..++. .+...++-.+.|+...||..|.+.++.+++.+
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~ 445 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVH 445 (815)
T ss_pred cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHh
Confidence 22332 34557777888888888888888888888865
No 82
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=84.17 E-value=1.6e+02 Score=39.27 Aligned_cols=215 Identities=21% Similarity=0.210 Sum_probs=132.3
Q ss_pred cCC-chHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHhc-C--CCcHHHHHHHHHHHHHh
Q 000321 133 DLE-CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALG-R--NKNDTARRLAMNVIEQC 208 (1670)
Q Consensus 133 DL~-~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vIeEse~vp~~vLd~IL~~l~-~--~~~~~a~~lA~~v~~~~ 208 (1670)
+++ -+||+..+|..++... .....+|..-.+.|+..+.++--.|+.+|-+.|...+. + .+. |+-++-.-+|
T Consensus 75 q~d~e~DlV~~~f~hlLRg~-Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dre-p~VRiqAv~a--- 149 (892)
T KOG2025|consen 75 QLDKEEDLVAGTFYHLLRGT-ESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDRE-PNVRIQAVLA--- 149 (892)
T ss_pred ccCchhhHHHHHHHHHHhcc-cCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccC-chHHHHHHHH---
Confidence 444 4779999988877643 44567899999999999999988999999998876552 1 111 2211111111
Q ss_pred hhhhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCC
Q 000321 209 AGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA 288 (1670)
Q Consensus 209 ~dkL~~~I~qyf~~il~~~~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~ 288 (1670)
.. +|.+ + +.+....+-.++..|-+..| ..++|..|.- |++..
T Consensus 150 Ls--------rlQ~----d--~~dee~~v~n~l~~liqnDp-----------------S~EVRRaaLs----nI~vd--- 191 (892)
T KOG2025|consen 150 LS--------RLQG----D--PKDEECPVVNLLKDLIQNDP-----------------SDEVRRAALS----NISVD--- 191 (892)
T ss_pred HH--------HHhc----C--CCCCcccHHHHHHHHHhcCC-----------------cHHHHHHHHH----hhccC---
Confidence 11 1221 2 22333445555555555444 5788888754 23321
Q ss_pred chhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCC
Q 000321 289 NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS 368 (1670)
Q Consensus 289 ~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~ 368 (1670)
++|+-.-++|..|.+..+|..+-+.+-.=+ +--...+..-+-.|..-|.|-++-||.|.+.+|..-. +..
T Consensus 192 -----nsTlp~IveRarDV~~anRrlvY~r~lpki--d~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~W---l~~ 261 (892)
T KOG2025|consen 192 -----NSTLPCIVERARDVSGANRRLVYERCLPKI--DLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGW---LRF 261 (892)
T ss_pred -----cccchhHHHHhhhhhHHHHHHHHHHhhhhh--hhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH---hhh
Confidence 246667899999999999998877654322 1111112233456677799999999999999984432 333
Q ss_pred CCHHHHHHHHHhhccC-ChhHHHHHHHHHHHHHH
Q 000321 369 IPVETVKLVAERLRDK-SVLVKRYTMERLADIFR 401 (1670)
Q Consensus 369 Vs~elL~~laeR~RDK-K~~VR~eAm~~La~LY~ 401 (1670)
....+++.| +|+-=- ...|+..|+++|-+.-+
T Consensus 262 ~dgni~ElL-~~ldvsnss~vavk~lealf~~v~ 294 (892)
T KOG2025|consen 262 SDGNILELL-ERLDVSNSSEVAVKALEALFSGVR 294 (892)
T ss_pred ccccHHHHH-HHhccccchHHHHHHHHHHHHHHH
Confidence 334444443 444333 34899999998877433
No 83
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=84.06 E-value=11 Score=47.51 Aligned_cols=135 Identities=14% Similarity=0.012 Sum_probs=90.8
Q ss_pred hHHHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHH
Q 000321 236 DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSV 315 (1670)
Q Consensus 236 ~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~ 315 (1670)
.+| |--|-..-|..+...++.|.. .++..+|..|+..++. . ..+..+...+....|..+.||.++
T Consensus 42 ~Ah--LdgL~~~G~~a~~~L~~aL~~---d~~~ev~~~aa~al~~---~-------~~~~~~~~L~~~L~d~~~~vr~aa 106 (410)
T TIGR02270 42 LAH--VDGLVLAGKAATELLVSALAE---ADEPGRVACAALALLA---Q-------EDALDLRSVLAVLQAGPEGLCAGI 106 (410)
T ss_pred HHH--HHHHHHhhHhHHHHHHHHHhh---CCChhHHHHHHHHHhc---c-------CChHHHHHHHHHhcCCCHHHHHHH
Confidence 455 555555556665555555532 4667777776655531 1 112358889999999999999999
Q ss_pred HHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHH
Q 000321 316 LEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMER 395 (1670)
Q Consensus 316 v~~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~Vs~elL~~laeR~RDKK~~VR~eAm~~ 395 (1670)
++..+.|= -.+....|...|.|.|..||.+++.+... ... -+.+.+ ..-+.|..+.||..|+..
T Consensus 107 a~ALg~i~--------~~~a~~~L~~~L~~~~p~vR~aal~al~~---r~~--~~~~~L---~~~L~d~d~~Vra~A~ra 170 (410)
T TIGR02270 107 QAALGWLG--------GRQAEPWLEPLLAASEPPGRAIGLAALGA---HRH--DPGPAL---EAALTHEDALVRAAALRA 170 (410)
T ss_pred HHHHhcCC--------chHHHHHHHHHhcCCChHHHHHHHHHHHh---hcc--ChHHHH---HHHhcCCCHHHHHHHHHH
Confidence 99987421 13567788888899999999988855533 221 133433 344569999999999999
Q ss_pred HHHHHH
Q 000321 396 LADIFR 401 (1670)
Q Consensus 396 La~LY~ 401 (1670)
||.+=.
T Consensus 171 LG~l~~ 176 (410)
T TIGR02270 171 LGELPR 176 (410)
T ss_pred HHhhcc
Confidence 998644
No 84
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.13 E-value=48 Score=44.06 Aligned_cols=102 Identities=20% Similarity=0.318 Sum_probs=73.0
Q ss_pred hhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHH-HHHh---hhcCCChhHHHHHHHHhHHHHhc
Q 000321 250 QILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFS-EFLK---RLTDRIVAVRMSVLEHVKSCLLT 325 (1670)
Q Consensus 250 ~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~-~fL~---R~~D~s~~VR~~~v~~~~~iL~~ 325 (1670)
+++..|++. |.+.|.++|.++..+.-++.+..... + --..++ ++.+ --.|..-.-|...++....|-.+
T Consensus 317 ~l~mDvLrv----Lss~dldvr~Ktldi~ldLvssrNve--d-iv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~ 389 (948)
T KOG1058|consen 317 GLIMDVLRV----LSSPDLDVRSKTLDIALDLVSSRNVE--D-IVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVK 389 (948)
T ss_pred HHHHHHHHH----cCcccccHHHHHHHHHHhhhhhccHH--H-HHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhc
Confidence 444555555 67899999999999999999876421 1 001111 1111 12456667799999999999998
Q ss_pred CCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHH
Q 000321 326 DPSRADAPQILTALCDRLLDFDENVRKQVVAVICD 360 (1670)
Q Consensus 326 ~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~ 360 (1670)
-|+. +..++..|.+-+-|+.+.-=..++.-|.+
T Consensus 390 Fp~~--aatvV~~ll~fisD~N~~aas~vl~FvrE 422 (948)
T KOG1058|consen 390 FPEV--AATVVSLLLDFISDSNEAAASDVLMFVRE 422 (948)
T ss_pred ChHH--HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 8864 67899999999999999987777766655
No 85
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=82.96 E-value=38 Score=44.41 Aligned_cols=144 Identities=13% Similarity=0.071 Sum_probs=91.2
Q ss_pred hhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCC-------CchhhcHHHHHHHHhhh-cCCChhHHHHHHH
Q 000321 246 RCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGS-------ANNEQFHSVFSEFLKRL-TDRIVAVRMSVLE 317 (1670)
Q Consensus 246 ~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~-------~~~~~y~~~w~~fL~R~-~D~s~~VR~~~v~ 317 (1670)
+-.|++|..+.+.++..-.-.+..+|.-|+-.+|.|.-.--. .....+-......|+.. .+.+...++.+++
T Consensus 389 ~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk 468 (574)
T smart00638 389 YPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLK 468 (574)
T ss_pred cCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHH
Confidence 446777777777777776667889999999999988742111 11233334444444333 3456677888888
Q ss_pred HhHHHHhcCCCCCChHHHHHHHHhhhC---CChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHH
Q 000321 318 HVKSCLLTDPSRADAPQILTALCDRLL---DFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTME 394 (1670)
Q Consensus 318 ~~~~iL~~~p~~~~~~eii~~L~~rL~---D~DEkVR~aaVkai~~la~~~l~~Vs~elL~~laeR~RDKK~~VR~eAm~ 394 (1670)
++++ .-+| ..+..|...+. .....||.+||.++..++...+..+-.-++..+.. ++..+.||-.|..
T Consensus 469 aLGN--~g~~------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n--~~e~~EvRiaA~~ 538 (574)
T smart00638 469 ALGN--AGHP------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLN--RAEPPEVRMAAVL 538 (574)
T ss_pred hhhc--cCCh------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcC--CCCChHHHHHHHH
Confidence 8875 2222 34455555544 45678999999999887776655554444443322 2244789998887
Q ss_pred HHHHH
Q 000321 395 RLADI 399 (1670)
Q Consensus 395 ~La~L 399 (1670)
.|.+-
T Consensus 539 ~lm~t 543 (574)
T smart00638 539 VLMET 543 (574)
T ss_pred HHHhc
Confidence 77654
No 86
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=82.34 E-value=9.3 Score=46.16 Aligned_cols=136 Identities=21% Similarity=0.293 Sum_probs=94.8
Q ss_pred HHHHHHhh-CchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCC----------
Q 000321 240 VIYDVYRC-SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRI---------- 308 (1670)
Q Consensus 240 Li~eL~~~-~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s---------- 308 (1670)
.++.|-.+ .|..+-..++.|+. .++..+|..|...||.+-.... +...+.-..|..
T Consensus 94 a~~aLg~~~~~~a~~~li~~l~~---d~~~~vR~~aa~aL~~~~~~~a----------~~~l~~~l~~~~~~~a~~~~~~ 160 (335)
T COG1413 94 AADALGELGDPEAVPPLVELLEN---DENEGVRAAAARALGKLGDERA----------LDPLLEALQDEDSGSAAAALDA 160 (335)
T ss_pred HHHHHHccCChhHHHHHHHHHHc---CCcHhHHHHHHHHHHhcCchhh----------hHHHHHHhccchhhhhhhhccc
Confidence 33344444 35555555555554 6899999999999998876542 222222233322
Q ss_pred --hhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCCh
Q 000321 309 --VAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSV 386 (1670)
Q Consensus 309 --~~VR~~~v~~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~Vs~elL~~laeR~RDKK~ 386 (1670)
-.+|...+..... ... ...+..+...+.|.+..||.++..+++.+.... ..+...+...+.|-.+
T Consensus 161 ~~~~~r~~a~~~l~~----~~~----~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-----~~~~~~l~~~~~~~~~ 227 (335)
T COG1413 161 ALLDVRAAAAEALGE----LGD----PEAIPLLIELLEDEDADVRRAAASALGQLGSEN-----VEAADLLVKALSDESL 227 (335)
T ss_pred hHHHHHHHHHHHHHH----cCC----hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-----hhHHHHHHHHhcCCCH
Confidence 1567776666543 111 356778899999999999999999998877765 4455677888999999
Q ss_pred hHHHHHHHHHHHHHH
Q 000321 387 LVKRYTMERLADIFR 401 (1670)
Q Consensus 387 ~VR~eAm~~La~LY~ 401 (1670)
.||..++..|+.+=.
T Consensus 228 ~vr~~~~~~l~~~~~ 242 (335)
T COG1413 228 EVRKAALLALGEIGD 242 (335)
T ss_pred HHHHHHHHHhcccCc
Confidence 999999999987644
No 87
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.23 E-value=2e+02 Score=38.78 Aligned_cols=144 Identities=16% Similarity=0.172 Sum_probs=90.2
Q ss_pred CchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCC--hhHHHH---HHHHhHHH
Q 000321 248 SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRI--VAVRMS---VLEHVKSC 322 (1670)
Q Consensus 248 ~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s--~~VR~~---~v~~~~~i 322 (1670)
+|+.-...--+|...|...++..+..|.+.+=.|+.. | ..+|+++..- -||.=.+ .++... ..+.++
T Consensus 14 ~p~~e~~~~~~ik~~Lek~~~~~KIeamK~ii~~mln-G----e~~p~Llm~I-iRfvlps~~~elKKLly~ywE~vP-- 85 (948)
T KOG1058|consen 14 SPDGEPMSEDEIKEKLEKGDDEVKIEAMKKIIALMLN-G----EDLPSLLMTI-IRFVLPSRNHELKKLLYYYWELVP-- 85 (948)
T ss_pred CCcccccchHHHHHHHhcCChHHHHHHHHHHHHHHHc-C----CCchHHHHHH-hheeeccCchHHHHHHHHHHHHcc--
Confidence 3444444445677788999999999999988777765 3 4556655432 2333211 122211 122222
Q ss_pred HhcCCCCCChHHH---HHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000321 323 LLTDPSRADAPQI---LTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 399 (1670)
Q Consensus 323 L~~~p~~~~~~ei---i~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~Vs~elL~~laeR~RDKK~~VR~eAm~~La~L 399 (1670)
.+++++....|. .+++++=|.-|.|=||-.+..-+|.+--.-+- +.++-++..-+--++.=||+.|+-++..|
T Consensus 86 -Kt~~dgkl~~EMILvcna~RkDLQHPNEyiRG~TLRFLckLkE~ELl---epl~p~IracleHrhsYVRrNAilaifsI 161 (948)
T KOG1058|consen 86 -KTDSDGKLLHEMILVCNAYRKDLQHPNEYIRGSTLRFLCKLKEPELL---EPLMPSIRACLEHRHSYVRRNAILAIFSI 161 (948)
T ss_pred -ccCCCcccHHHHHHHHHHHhhhccCchHhhcchhhhhhhhcCcHHHh---hhhHHHHHHHHhCcchhhhhhhheeehhH
Confidence 233332222333 37888899999999999999998876432211 12334555555667889999999999999
Q ss_pred HHHH
Q 000321 400 FRGC 403 (1670)
Q Consensus 400 Y~~~ 403 (1670)
|+..
T Consensus 162 yk~~ 165 (948)
T KOG1058|consen 162 YKNF 165 (948)
T ss_pred Hhhh
Confidence 9973
No 88
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=81.04 E-value=1.1e+02 Score=40.14 Aligned_cols=302 Identities=16% Similarity=0.148 Sum_probs=169.3
Q ss_pred HHHHHHhcch--hhhcCCCcchHHHHHHHH---HHHHhhcCCC--------CCC------ChhHHHHHHHHHHH-----h
Q 000321 45 QPFLNAIVQP--VLLKHQDKDVKLLVATCI---CEITRITAPE--------APY------SDDVLKDIFQLIVG-----T 100 (1670)
Q Consensus 45 ~~~~~~Lv~~--~LL~HkD~~Vra~vAcCL---adIlRI~APd--------aPy------td~~LkdIF~lfi~-----q 100 (1670)
+|+...||+. ++|+||-++||.-.|--. +-||.-|.-. .-| ..+.|--|...+.. -
T Consensus 599 kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~ 678 (975)
T COG5181 599 KPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHR 678 (975)
T ss_pred CcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhc
Confidence 3666777776 789999999998765433 3333322211 111 11334444444433 3
Q ss_pred ccCCCCCCCCChhhHHHHHHHH------HhhhhheeeccCCch-HHHHHHHHHHHhhhc--CCChhhHHHHHHHHHHHHh
Q 000321 101 FSGLKDTGGPSFGRRVVILETL------AKYRSCVVMLDLECD-ELVNEMYSTFFAVAS--DDHPESVLSSMQTIMIVLL 171 (1670)
Q Consensus 101 f~~L~d~~~p~f~q~~~LLe~L------a~vks~vl~~DL~~~-~Li~~lF~~ff~~v~--~~~~~~V~~~m~~IL~~vI 171 (1670)
|..+.-|-+.-.+.-.-||.+= .++...-.+|+...+ -=..+-.+++|.++- ..+.+.+......-+.-|-
T Consensus 679 ~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is 758 (975)
T COG5181 679 FRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCIS 758 (975)
T ss_pred ccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHH
Confidence 4455555555555555555542 234433355666422 224555667777653 2355555544444433322
Q ss_pred cccccccHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHhhhhhHHHHHHHHHH---hhcCCCCC----CCCcchHHHH-HH
Q 000321 172 EESEDIQEDLLVILLSALGRN-KNDTARRLAMNVIEQCAGKLEAGIKQFLVS---SMSGDSRP----GHSHIDYHEV-IY 242 (1670)
Q Consensus 172 eEse~vp~~vLd~IL~~l~~~-~~~~a~~lA~~v~~~~~dkL~~~I~qyf~~---il~~~~~~----~~~~~~~h~L-i~ 242 (1670)
.. .=|++||+++|+.|.-+ +. ..+|..-+=.+-.-.|.-|+= +|..=..+ .+..+++.-. +.
T Consensus 759 ~a--iGPqdvL~~LlnnLkvqeRq-------~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFe 829 (975)
T COG5181 759 RA--IGPQDVLDILLNNLKVQERQ-------QRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFE 829 (975)
T ss_pred hh--cCHHHHHHHHHhcchHHHHH-------hhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHH
Confidence 11 24899999999998522 11 111111111111111222321 11110111 1122344433 33
Q ss_pred HHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCC-CCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHH
Q 000321 243 DVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP-GSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKS 321 (1670)
Q Consensus 243 eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~-~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~ 321 (1670)
-+.+.+-+.+.++.|.||+-|...|.-.|+.|..++-.+--.. |.--....=.+.+-..--.-|.+|.|=..+.++...
T Consensus 830 yig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~ 909 (975)
T COG5181 830 YIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMES 909 (975)
T ss_pred HHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHH
Confidence 4667888999999999999999999999999999998876543 221222333344433345667899998887776655
Q ss_pred HHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHH
Q 000321 322 CLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVIC 359 (1670)
Q Consensus 322 iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~ 359 (1670)
+-..-. ..-+.+++..-|.-|--+||.+-+.++-
T Consensus 910 ~~~~lg----~g~~m~Yv~qGLFHPs~~VRk~ywtvyn 943 (975)
T COG5181 910 FATVLG----SGAMMKYVQQGLFHPSSTVRKRYWTVYN 943 (975)
T ss_pred HHHHhc----cHHHHHHHHHhccCchHHHHHHHHHHHh
Confidence 332211 2357899999999999999998665553
No 89
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=80.78 E-value=1.6e+02 Score=36.79 Aligned_cols=320 Identities=13% Similarity=0.099 Sum_probs=175.6
Q ss_pred cCCCcchHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhc----cC---CCCC-CCCChhhHHHHHHHHHhhhhhe
Q 000321 58 KHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTF----SG---LKDT-GGPSFGRRVVILETLAKYRSCV 129 (1670)
Q Consensus 58 ~HkD~~Vra~vAcCLadIlRI~APdaPytd~~LkdIF~lfi~qf----~~---L~d~-~~p~f~q~~~LLe~La~vks~v 129 (1670)
...|++=|.=+-..|+.+||.|-- .|.. ..+.+=+.+|+..+ .. =++| +...+.|..-+|-.+-.--.++
T Consensus 3 a~~~~~~r~daY~~l~~~l~~~~~-~~~~-~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~ 80 (372)
T PF12231_consen 3 AGSDRSSRLDAYMTLNNALKAYDN-LPDR-QALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIV 80 (372)
T ss_pred CcCCcHHHHHHHHHHHHHHHHhcC-CCcH-HHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHH
Confidence 445556555555669999998842 3322 33444444444433 21 1223 3345666666666665444443
Q ss_pred eeccCCchHHHHHHHHHHHhhh-cCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHhc--C----CCcH--HHHHH
Q 000321 130 VMLDLECDELVNEMYSTFFAVA-SDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALG--R----NKND--TARRL 200 (1670)
Q Consensus 130 l~~DL~~~~Li~~lF~~ff~~v-~~~~~~~V~~~m~~IL~~vIeEse~vp~~vLd~IL~~l~--~----~~~~--~a~~l 200 (1670)
-.++ ++...-+........ .+..++.+...-..+|..-==....++.+....|+..+. . .++- .+-.+
T Consensus 81 ~~l~---~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i 157 (372)
T PF12231_consen 81 STLS---DDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNI 157 (372)
T ss_pred hhCC---hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHH
Confidence 2222 233333344433333 355677766665555554111122345555555554331 1 1111 66778
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhcCC-CCCCCCcchHHHHHHHHHhhC-ch-hhhh-hhhhhcccccCCChHHHHHHHH
Q 000321 201 AMNVIEQCAGKLEAGIKQFLVSSMSGD-SRPGHSHIDYHEVIYDVYRCS-PQ-ILSG-VVPYLTGELLTDQLDTRLKAVG 276 (1670)
Q Consensus 201 A~~v~~~~~dkL~~~I~qyf~~il~~~-~~~~~~~~~~h~Li~eL~~~~-P~-lL~~-ViP~Le~EL~sed~~~Rl~At~ 276 (1670)
=+.++.++.+.|...+..+|-.++.+- +.......++..+..++-.+. |+ .+.. |...+...+..+ .+-..-++
T Consensus 158 ~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~--~~~~~~~~ 235 (372)
T PF12231_consen 158 YKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG--KLIQLYCE 235 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc--cHHHHHHH
Confidence 889999999999999988876554321 001111223566666555443 22 2222 333344444433 77788888
Q ss_pred HHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHH
Q 000321 277 LVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVA 356 (1670)
Q Consensus 277 llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVk 356 (1670)
.+.+|+..++. ...=|++|..++.=..+.- .+. .....+.+.-...++..+|..||.+|..
T Consensus 236 ~L~~mi~~~~~--~~~a~~iW~~~i~LL~~~~-------~~~----------w~~~n~wL~v~e~cFn~~d~~~k~~A~~ 296 (372)
T PF12231_consen 236 RLKEMIKSKDE--YKLAMQIWSVVILLLGSSR-------LDS----------WEHLNEWLKVPEKCFNSSDPQVKIQAFK 296 (372)
T ss_pred HHHHHHhCcCC--cchHHHHHHHHHHHhCCch-------hhc----------cHhHhHHHHHHHHHhcCCCHHHHHHHHH
Confidence 89999988531 2334679987766553321 111 1123577888889999999999999998
Q ss_pred HHHHhhhhh-cC-CCCHHHHH--------HHHHhhccCCh-hHHHHHHHHHHHHHHHH
Q 000321 357 VICDVACHA-LN-SIPVETVK--------LVAERLRDKSV-LVKRYTMERLADIFRGC 403 (1670)
Q Consensus 357 ai~~la~~~-l~-~Vs~elL~--------~laeR~RDKK~-~VR~eAm~~La~LY~~~ 403 (1670)
+=.-+.+.. .+ ......++ .+..+.-+|.. .||..+|..++.++-..
T Consensus 297 aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~~ 354 (372)
T PF12231_consen 297 AWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYYA 354 (372)
T ss_pred HHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchHHHH
Confidence 877766622 11 11223332 33333333333 89999999999876443
No 90
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=80.38 E-value=13 Score=45.00 Aligned_cols=90 Identities=21% Similarity=0.204 Sum_probs=64.5
Q ss_pred hhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHH
Q 000321 255 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQ 334 (1670)
Q Consensus 255 ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~e 334 (1670)
.++.+..-|.+++..+|..|+..+|.+=.. .....+.....|.++.||-.++...+. -.. .+
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~----------~av~~l~~~l~d~~~~vr~~a~~aLg~----~~~----~~ 105 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELGSE----------EAVPLLRELLSDEDPRVRDAAADALGE----LGD----PE 105 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhchH----------HHHHHHHHHhcCCCHHHHHHHHHHHHc----cCC----hh
Confidence 456666667777999999999997755332 466777888889999999999985543 211 23
Q ss_pred HHHHHHhhhC-CChhHHHHHHHHHHHHhh
Q 000321 335 ILTALCDRLL-DFDENVRKQVVAVICDVA 362 (1670)
Q Consensus 335 ii~~L~~rL~-D~DEkVR~aaVkai~~la 362 (1670)
.+..|...|. |.+..||..++.++..+.
T Consensus 106 a~~~li~~l~~d~~~~vR~~aa~aL~~~~ 134 (335)
T COG1413 106 AVPPLVELLENDENEGVRAAAARALGKLG 134 (335)
T ss_pred HHHHHHHHHHcCCcHhHHHHHHHHHHhcC
Confidence 4455555555 899999999888886653
No 91
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.10 E-value=2.3e+02 Score=38.10 Aligned_cols=112 Identities=18% Similarity=0.205 Sum_probs=80.2
Q ss_pred CchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCC
Q 000321 248 SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDP 327 (1670)
Q Consensus 248 ~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p 327 (1670)
.-+++.-.+-++.-.|.+.++-.=-.|...|. .|..|+ +++ ++...-+.=.+-.-|-||...|-..-.+...-|
T Consensus 103 ~tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS-~fvTpd--LAR---DLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYP 176 (877)
T KOG1059|consen 103 DTDVLMLTTNLLRKDLNSSNVYEVGLALSGLS-CIVTPD--LAR---DLADDVFTLLNSSKPYVRKKAILLLYKVFLKYP 176 (877)
T ss_pred CccHHHHHHHHHHHHhccCccchhhheecccc-cccCch--hhH---HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhh
Confidence 33444444556666777777666666777766 344443 554 344433444555789999999998888887777
Q ss_pred CCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcC
Q 000321 328 SRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN 367 (1670)
Q Consensus 328 ~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~ 367 (1670)
+. .+.-.+-|.++|-|||..|--|||.+||++|..++.
T Consensus 177 eA--lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPk 214 (877)
T KOG1059|consen 177 EA--LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQ 214 (877)
T ss_pred Hh--HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCc
Confidence 52 356788999999999999999999999999998765
No 92
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=78.65 E-value=78 Score=38.73 Aligned_cols=204 Identities=13% Similarity=0.104 Sum_probs=102.3
Q ss_pred HHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHhccc-ccccHHHHHHHHHHhcCCCcH--HHH-HHHHHHH--------H
Q 000321 139 LVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEES-EDIQEDLLVILLSALGRNKND--TAR-RLAMNVI--------E 206 (1670)
Q Consensus 139 Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vIeEs-e~vp~~vLd~IL~~l~~~~~~--~a~-~lA~~v~--------~ 206 (1670)
+-..+-+.|..++..+..+.....|...|..-+.-. ..+|..+++.+-.-+...+.. -+| .....++ .
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~ 98 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSL 98 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHH
Confidence 444444555555556666666666666666655554 789999999998888655442 222 1222222 2
Q ss_pred HhhhhhHHHHHHHHHHhhcCCCCC-C-CCcchHHHHHH--------------HHH----hhCchhhhhhhhhhcccccCC
Q 000321 207 QCAGKLEAGIKQFLVSSMSGDSRP-G-HSHIDYHEVIY--------------DVY----RCSPQILSGVVPYLTGELLTD 266 (1670)
Q Consensus 207 ~~~dkL~~~I~qyf~~il~~~~~~-~-~~~~~~h~Li~--------------eL~----~~~P~lL~~ViP~Le~EL~se 266 (1670)
..+..+-+.+-+++.++....... . ....-++-++. ..| .--|.+|.+ |-+...|.++
T Consensus 99 ~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~--~kvyskl~~~ 176 (339)
T PF12074_consen 99 KFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLS--EKVYSKLASE 176 (339)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcC--HHHHhccCCH
Confidence 223334455555566655432111 1 11112222222 011 112333333 3444444322
Q ss_pred ChHHHHHHHHHHHHhhcCCCCCchhh-cHHHHHHHHhhhcCC--ChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhh
Q 000321 267 QLDTRLKAVGLVGDLFAVPGSANNEQ-FHSVFSEFLKRLTDR--IVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRL 343 (1670)
Q Consensus 267 d~~~Rl~At~llG~mfs~~~~~~~~~-y~~~w~~fL~R~~D~--s~~VR~~~v~~~~~iL~~~p~~~~~~eii~~L~~rL 343 (1670)
++ =.-.++.+-.++.......... .....++|+-=.... ++.||...++..+.++..+|.. ....|+.+|...|
T Consensus 177 ~d--~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~-l~~~li~~l~~~l 253 (339)
T PF12074_consen 177 ED--LCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL-LSKSLISGLWKWL 253 (339)
T ss_pred hH--HHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHH
Confidence 22 2345555555555433222111 133444666666666 7777877777777777777642 3345556666555
Q ss_pred CCCh
Q 000321 344 LDFD 347 (1670)
Q Consensus 344 ~D~D 347 (1670)
.+.+
T Consensus 254 ~~~~ 257 (339)
T PF12074_consen 254 SSSE 257 (339)
T ss_pred Hhcc
Confidence 4433
No 93
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=78.09 E-value=10 Score=50.82 Aligned_cols=149 Identities=17% Similarity=0.196 Sum_probs=116.2
Q ss_pred hhhhhhhcccccCCChHHHHHHHHHHHHhhcCCC-CCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCC--C
Q 000321 253 SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG-SANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPS--R 329 (1670)
Q Consensus 253 ~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~-~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~--~ 329 (1670)
..+.|-|.....+..-..|-.=...|...++.-. .-+.-..|.++--.|.-..=.++.||+.-.+..+..+.-++. .
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 3466666666667777777778888888887432 234567889999999999999999999999999998887754 2
Q ss_pred CChHHHHHHHHhhhCCCh---hHHHHHHHHHHHHhhhhh----cCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 000321 330 ADAPQILTALCDRLLDFD---ENVRKQVVAVICDVACHA----LNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFR 401 (1670)
Q Consensus 330 ~~~~eii~~L~~rL~D~D---EkVR~aaVkai~~la~~~----l~~Vs~elL~~laeR~RDKK~~VR~eAm~~La~LY~ 401 (1670)
.....+++.+..--.|.| --||..|.+.+..+.... +...-.++++.+.-=+-|||..||++|+.+=.+-|-
T Consensus 946 ~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~ 1024 (1030)
T KOG1967|consen 946 EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWYM 1024 (1030)
T ss_pred HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhh
Confidence 334577888888888888 679999999998887633 334466799999999999999999999987665553
No 94
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.89 E-value=52 Score=44.17 Aligned_cols=117 Identities=17% Similarity=0.308 Sum_probs=68.4
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhheeeccCC-c--hHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHhccccc-ccHH
Q 000321 105 KDTGGPSFGRRVVILETLAKYRSCVVMLDLE-C--DELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESED-IQED 180 (1670)
Q Consensus 105 ~d~~~p~f~q~~~LLe~La~vks~vl~~DL~-~--~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vIeEse~-vp~~ 180 (1670)
.+|++|-| ++|+.|+++-+ +.-.|+-. + ..+...||=.|-.+-+.| =.....+...||+.+++-+.. +|.+
T Consensus 603 KNPs~P~f--nHYLFEsi~~l--i~~t~~~~~~~vs~~e~aL~p~fq~Il~eD-I~EfiPYvfQlla~lve~~~~~ip~~ 677 (960)
T KOG1992|consen 603 KNPSNPQF--NHYLFESIGLL--IRKTCKANPSAVSSLEEALFPVFQTILSED-IQEFIPYVFQLLAVLVEHSSGTIPDS 677 (960)
T ss_pred cCCCCchh--HHHHHHHHHHH--HHHHhccCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCchh
Confidence 46677754 57889998753 22345544 1 345666664444433221 234667778899999998876 8887
Q ss_pred HHHHHHHHhcCC---Cc---HHHHHHHHHHHHHhhhhhH-----HHHHHHHHHhhcC
Q 000321 181 LLVILLSALGRN---KN---DTARRLAMNVIEQCAGKLE-----AGIKQFLVSSMSG 226 (1670)
Q Consensus 181 vLd~IL~~l~~~---~~---~~a~~lA~~v~~~~~dkL~-----~~I~qyf~~il~~ 226 (1670)
...++.-.+.++ ++ .+.-+|-..++.+.+.... .+|-.+|.-++..
T Consensus 678 ~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaS 734 (960)
T KOG1992|consen 678 YSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIAS 734 (960)
T ss_pred HHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcC
Confidence 665544334322 12 2556777777766655443 3455666666543
No 95
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=75.53 E-value=27 Score=48.48 Aligned_cols=137 Identities=20% Similarity=0.215 Sum_probs=100.2
Q ss_pred CcchHHHHHHHHH-----hhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCC
Q 000321 233 SHIDYHEVIYDVY-----RCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDR 307 (1670)
Q Consensus 233 ~~~~~h~Li~eL~-----~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~ 307 (1670)
..+.-.+++..+| +..| +.+-+|-|-.-+.+....+|..|.+.+|.||.. .....+-.+.+.|+-=..|.
T Consensus 792 ~~~~s~~vf~s~~~~m~s~l~~--~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~---~~~e~m~~v~~~~~~ll~~~ 866 (1549)
T KOG0392|consen 792 EFLSSFEVFNSLAPLMHSFLHP--LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKS---ATRETMATVINGFLPLLGDL 866 (1549)
T ss_pred chhhhHHHHHHHHHhhhhhhhh--hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhccch
Confidence 3444556666666 3345 667788888889999999999999999999975 34566777778887777888
Q ss_pred ChhHHHHHHHHhHHHHhcCCCC---CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhh--------hcCCCCHHHH
Q 000321 308 IVAVRMSVLEHVKSCLLTDPSR---ADAPQILTALCDRLLDFDENVRKQVVAVICDVACH--------ALNSIPVETV 374 (1670)
Q Consensus 308 s~~VR~~~v~~~~~iL~~~p~~---~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~--------~l~~Vs~elL 374 (1670)
+--+|.+-...+-.+|.....+ .-..-++.-|..|+-|.+|.||.+|-+++..+... .+..+|.+++
T Consensus 867 ~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl 944 (1549)
T KOG0392|consen 867 DKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELL 944 (1549)
T ss_pred hhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHH
Confidence 8888887777766666542111 11234778899999999999999999999887652 2445677776
No 96
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=75.15 E-value=31 Score=46.63 Aligned_cols=131 Identities=11% Similarity=0.078 Sum_probs=95.2
Q ss_pred ChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCC
Q 000321 267 QLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDF 346 (1670)
Q Consensus 267 d~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~eii~~L~~rL~D~ 346 (1670)
-.-+|..++-|+|+|.-+++ .+++.|-+++..=|....| ++||--+|-+..+|-... ..-..--+..+..+|.||
T Consensus 944 ~~~vra~~vvTlakmcLah~-~LaKr~~P~lvkeLe~~~~--~aiRnNiV~am~D~C~~Y--Tam~d~YiP~I~~~L~Dp 1018 (1529)
T KOG0413|consen 944 SDKVRAVGVVTLAKMCLAHD-RLAKRLMPMLVKELEYNTA--HAIRNNIVLAMGDICSSY--TAMTDRYIPMIAASLCDP 1018 (1529)
T ss_pred chHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhhhH--HHHhcceeeeehhhHHHH--HHHHHHhhHHHHHHhcCc
Confidence 45689999999999998876 7899888888877776544 677866555544433321 111123467888999999
Q ss_pred hhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000321 347 DENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 402 (1670)
Q Consensus 347 DEkVR~aaVkai~~la~~~l~~Vs~elL~~laeR~RDKK~~VR~eAm~~La~LY~~ 402 (1670)
++-||.+++.-+..+-.+.+-.-..+++--+.--+-|-+..||..|=-.+|.+...
T Consensus 1019 ~~iVRrqt~ilL~rLLq~~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1019 SVIVRRQTIILLARLLQFGIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhh
Confidence 99999999999888877776666677655455666799999988777766666654
No 97
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=74.55 E-value=3.7e+02 Score=37.71 Aligned_cols=180 Identities=14% Similarity=0.154 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHH-------HHHhhcCCCCCCCCcch--HHHHHHHHHhhCchhhh-hhhhhhcccccC
Q 000321 196 TARRLAMNVIEQCAGKLEAGIKQF-------LVSSMSGDSRPGHSHID--YHEVIYDVYRCSPQILS-GVVPYLTGELLT 265 (1670)
Q Consensus 196 ~a~~lA~~v~~~~~dkL~~~I~qy-------f~~il~~~~~~~~~~~~--~h~Li~eL~~~~P~lL~-~ViP~Le~EL~s 265 (1670)
.+--+|.....+|--.+..+|.+| |+.+++.+=.-=+..++ +-.-+.+|....|..+. .|+|.|=....+
T Consensus 514 ~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls 593 (1133)
T KOG1943|consen 514 TIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLS 593 (1133)
T ss_pred hcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcC
Confidence 334567777778877777777776 44444332000001111 22234458889999999 588998888999
Q ss_pred CChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCC
Q 000321 266 DQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLD 345 (1670)
Q Consensus 266 ed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~eii~~L~~rL~D 345 (1670)
.+...|.-++-..|.+++.-. .-+|-+.. ..+=|++|... ++..++++-.+
T Consensus 594 ~~~~~r~g~~la~~ev~~~~~----~l~~~~~~---------l~e~~i~~l~~----------------ii~~~~~~~~~ 644 (1133)
T KOG1943|consen 594 KDASMRHGVFLAAGEVIGALR----KLEPVIKG---------LDENRIAGLLS----------------IIPPICDRYFY 644 (1133)
T ss_pred CChHHhhhhHHHHHHHHHHhh----hhhhhhhh---------hHHHHhhhhhh----------------hccHHHHHHhc
Confidence 999999999999998886521 11111111 22233333322 22333333333
Q ss_pred Ch--hHHHHHHHHHHHHhhhhhcC----CCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhh
Q 000321 346 FD--ENVRKQVVAVICDVACHALN----SIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCL 405 (1670)
Q Consensus 346 ~D--EkVR~aaVkai~~la~~~l~----~Vs~elL~~laeR~RDKK~~VR~eAm~~La~LY~~~~~ 405 (1670)
.- +..|.++++.|..+.-.... .+.......+++-+++-+ .+|..|...++.++..|+.
T Consensus 645 rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~ 709 (1133)
T KOG1943|consen 645 RGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVK 709 (1133)
T ss_pred cchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHh
Confidence 33 56666766666655444432 222233344555555555 7999999999999998874
No 98
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=74.10 E-value=1.6e+02 Score=42.37 Aligned_cols=220 Identities=17% Similarity=0.242 Sum_probs=122.6
Q ss_pred HhccCCCCC---CCCChhhHHHHHHHHHhhhhhe-eeccCCchHHHHHH---------HHHHHhhhcCCChhhHHHHHHH
Q 000321 99 GTFSGLKDT---GGPSFGRRVVILETLAKYRSCV-VMLDLECDELVNEM---------YSTFFAVASDDHPESVLSSMQT 165 (1670)
Q Consensus 99 ~qf~~L~d~---~~p~f~q~~~LLe~La~vks~v-l~~DL~~~~Li~~l---------F~~ff~~v~~~~~~~V~~~m~~ 165 (1670)
.+|++++.| .+....++.++|.++-.+-.-- ..+|-.-++||..| .+..+..+..-.|.++...|..
T Consensus 768 G~~p~~~~p~~~g~k~~~k~~~~l~~l~nIL~Gy~~~l~~~~~~li~~Lr~p~Lp~~ew~~~~s~~~~Rlp~~l~~~~~~ 847 (2196)
T KOG0368|consen 768 GSFPRLGSPAIEGNKPHQKFHSLLNRLENILAGYDPKLDETVQELIKVLRDPELPYLEWQEHISALANRLPPNLDKSLES 847 (2196)
T ss_pred ccccccCCccccccchHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHhcCCCcChHHHHHHHHHHhccCChhHHHHHHH
Confidence 467777765 3334455677777766542211 11221135555555 5556666667778888888888
Q ss_pred HHHHHhcccccccHHHHHHHHHH-hc-CCCcH---------HHHHHHHHHHHHhhh--------hhHHHH--HHHHHHhh
Q 000321 166 IMIVLLEESEDIQEDLLVILLSA-LG-RNKND---------TARRLAMNVIEQCAG--------KLEAGI--KQFLVSSM 224 (1670)
Q Consensus 166 IL~~vIeEse~vp~~vLd~IL~~-l~-~~~~~---------~a~~lA~~v~~~~~d--------kL~~~I--~qyf~~il 224 (1670)
++..-..-.-..|...|..||.. +. .+.++ |--+|...-+..-.. -|+.|+ -+||+.
T Consensus 848 ~~~~~~s~~t~FPakql~~il~~~~~~~~~~~~~~~~~~~~pl~~l~~~y~~g~~~H~~~v~~~Lle~Yl~VEk~F~~-- 925 (2196)
T KOG0368|consen 848 LVAKSASRITQFPAKQLAKILDAHLATLNRAEREVLFVNIQPLLKLVSRYSGGLEAHAKEVVHDLLEEYLEVEKLFNG-- 925 (2196)
T ss_pred HHHHHhhhcccCcHHHHHHHHHHHhhccccccchhhhhhhhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 88877666667899999988853 31 11111 222233222222111 122222 123321
Q ss_pred cCCCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhcccccCCC-hHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhh
Q 000321 225 SGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQ-LDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKR 303 (1670)
Q Consensus 225 ~~~~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed-~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R 303 (1670)
....+-..|..|-+-.+..+..|+-++- ++.+ ..--.+.+.+|+.|-. ++ ...++.|..-|.+
T Consensus 926 --------~~~~~e~~i~~lr~~~~~d~~kVv~~i~---SHs~i~~KN~Lv~~ll~~l~~-~s----~~~~~~f~~iL~~ 989 (2196)
T KOG0368|consen 926 --------RDSHYEDVILRLREENKKDLKKVVDIIL---SHSQIKSKNKLVLALLDQLKP-PS----SKVSDEFRDILRK 989 (2196)
T ss_pred --------CcchHHHHHHHHHHhhhhHHHHHHHHHH---cchhhhhhhHHHHHHHHHhcC-CC----CCCCHHHHHHHHH
Confidence 1112334666666666665666665543 2222 2223455666666554 33 4556777888888
Q ss_pred hcCCChhHHHHHHHHhHHHHhcCCCCCChHHHH
Q 000321 304 LTDRIVAVRMSVLEHVKSCLLTDPSRADAPQIL 336 (1670)
Q Consensus 304 ~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~eii 336 (1670)
+.+-+...-.++.-.|.+||...|+.......+
T Consensus 990 l~~L~~~~~~eVal~Ar~iLi~~ps~~~R~n~~ 1022 (2196)
T KOG0368|consen 990 LTELNHTNTSEVALKARQILIQSPSYELRHNQI 1022 (2196)
T ss_pred HHhhccchHHHHHHHHHHHHHhCcchhhhHHHH
Confidence 888888877888888888888877644333333
No 99
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=73.98 E-value=26 Score=48.43 Aligned_cols=156 Identities=18% Similarity=0.256 Sum_probs=100.2
Q ss_pred cchHHHHHHHHHhh--CchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHH----hhh-cC
Q 000321 234 HIDYHEVIYDVYRC--SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFL----KRL-TD 306 (1670)
Q Consensus 234 ~~~~h~Li~eL~~~--~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL----~R~-~D 306 (1670)
.+++-+|+..|-++ .-..|-.|+|++-+-+.....++|..|+.||.++++.-. .+....-.+|.+|| .++ +|
T Consensus 440 K~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr-~~~~~daniF~eYlfP~L~~l~~d 518 (1431)
T KOG1240|consen 440 KLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVR-DIPPSDANIFPEYLFPHLNHLLND 518 (1431)
T ss_pred HHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhcc-CCCcccchhhHhhhhhhhHhhhcc
Confidence 34678888888766 556788899999999999999999999999999998642 34333334444443 333 45
Q ss_pred -CChhHHHHHHHHhHHHHhc------------------CCC---------CCChHHHH----HHHHhhhCCChhHHHHHH
Q 000321 307 -RIVAVRMSVLEHVKSCLLT------------------DPS---------RADAPQIL----TALCDRLLDFDENVRKQV 354 (1670)
Q Consensus 307 -~s~~VR~~~v~~~~~iL~~------------------~p~---------~~~~~eii----~~L~~rL~D~DEkVR~aa 354 (1670)
-...||++...+++.+-.+ .|. ..+..++. ..+...|.|++.-||.+-
T Consensus 519 ~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~L 598 (1431)
T KOG1240|consen 519 SSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRAL 598 (1431)
T ss_pred CccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 5677999888777653321 111 11122332 344446777777777777
Q ss_pred HHHHHHhhhhhcCCCCHH-HHHHHHHhhccCChhHHH
Q 000321 355 VAVICDVACHALNSIPVE-TVKLVAERLRDKSVLVKR 390 (1670)
Q Consensus 355 Vkai~~la~~~l~~Vs~e-lL~~laeR~RDKK~~VR~ 390 (1670)
++.|+.+..+--..=+.+ +|..|.-=+-||.+..|.
T Consensus 599 le~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~ 635 (1431)
T KOG1240|consen 599 LESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRG 635 (1431)
T ss_pred HHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHH
Confidence 777777665443333333 455566666677666664
No 100
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=73.95 E-value=3.9 Score=44.93 Aligned_cols=120 Identities=14% Similarity=0.199 Sum_probs=86.5
Q ss_pred HHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHH
Q 000321 238 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 317 (1670)
Q Consensus 238 h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~ 317 (1670)
-+++.++++..+..-..++-++-..+.+.....-..=+.+|+.|..... .....|.+...+|+.-+....+.+-+..+.
T Consensus 39 ~~IL~~~fk~h~~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~p-~~vle~~~~l~~~ld~l~~lp~~~a~~ll~ 117 (158)
T PF14676_consen 39 IQILLELFKVHEMIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKAP-LTVLECSSKLKELLDYLSFLPGDVAIGLLR 117 (158)
T ss_dssp HHHHHHHHHH-GGGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH-H-HHHS-S-HHHHGGGGGTTTS-HHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHCh-HHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4677788888888888888777777776555433344688888876532 456778888899999999999999999999
Q ss_pred HhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHH
Q 000321 318 HVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICD 360 (1670)
Q Consensus 318 ~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~ 360 (1670)
++-.++..+++. ...++--|++-+.--|..+|..||..+++
T Consensus 118 Al~PLi~~s~~l--rd~lilvLRKamf~r~~~~R~~Av~Gfl~ 158 (158)
T PF14676_consen 118 ALLPLIKFSPSL--RDSLILVLRKAMFSRELDARQMAVNGFLQ 158 (158)
T ss_dssp HHHHHHTT-HHH--HHHHHHHHHHHTT-SSHHHHHHHHHHHH-
T ss_pred HHHHHHhcCHHH--HHHHHHHHHHHHccccHHHHHHHHHHhcC
Confidence 999988877642 33677888888999999999999998864
No 101
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.78 E-value=8.6 Score=49.26 Aligned_cols=141 Identities=21% Similarity=0.192 Sum_probs=86.6
Q ss_pred hhhhhhcccccCCChHHHHHHHHHHHHhhcCCC--CCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhc-----C
Q 000321 254 GVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG--SANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT-----D 326 (1670)
Q Consensus 254 ~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~--~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~-----~ 326 (1670)
+++|.+-.-|.+.+..+|-.|+-.||.+.+... .+++-.+ .+....|.=++.... +.++..+...|.+ +
T Consensus 152 gavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~-g~l~pLl~~l~~~~~---~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 152 GAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSC-GALDPLLRLLNKSDK---LSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred CchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhh-cchHHHHHHhccccc---hHHHHHHHHHHHHHHcCCC
Confidence 456667777889999999999999999988742 1111111 122223333333332 3444444444433 3
Q ss_pred CC--CCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCC----CHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 000321 327 PS--RADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI----PVETVKLVAERLRDKSVLVKRYTMERLAD 398 (1670)
Q Consensus 327 p~--~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~V----s~elL~~laeR~RDKK~~VR~eAm~~La~ 398 (1670)
|. .+.+..++++|...|...|+.|...||-+++-++-...+.+ ...+...|-+.+.-.+..|+.-|+..+|+
T Consensus 228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGN 305 (514)
T KOG0166|consen 228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGN 305 (514)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccc
Confidence 43 34567889999999999999999999988876654333322 12233455566666666666666665555
No 102
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=73.53 E-value=11 Score=49.52 Aligned_cols=108 Identities=16% Similarity=0.154 Sum_probs=82.6
Q ss_pred cHHHHH-HHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhh-hhcCCCC
Q 000321 293 FHSVFS-EFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVAC-HALNSIP 370 (1670)
Q Consensus 293 y~~~w~-~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~-~~l~~Vs 370 (1670)
|+..+. ..++=|.=.+..||+..+++....+-.-+..-...+|...+..-+.|+++.+|..+|+++..++. -+-..+.
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln 406 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLN 406 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhc
Confidence 444444 33455666788999999999988665332212234788999999999999999999999988875 4455688
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHHH
Q 000321 371 VETVKLVAERLRDKSVLVKRYTMERLADIF 400 (1670)
Q Consensus 371 ~elL~~laeR~RDKK~~VR~eAm~~La~LY 400 (1670)
.|+|+.++.---|-...+|..+-..||++=
T Consensus 407 ~Ellr~~ar~q~d~~~~irtntticlgki~ 436 (690)
T KOG1243|consen 407 GELLRYLARLQPDEHGGIRTNTTICLGKIA 436 (690)
T ss_pred HHHHHHHHhhCccccCcccccceeeecccc
Confidence 999999988877888889988888877763
No 103
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.75 E-value=42 Score=44.37 Aligned_cols=165 Identities=13% Similarity=0.131 Sum_probs=114.7
Q ss_pred hHHHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHH---------------H
Q 000321 236 DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSE---------------F 300 (1670)
Q Consensus 236 ~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~---------------f 300 (1670)
++-.++|.++---|+-|-..+|-|-+.|..+|+.+-..||..+.++-....-++..--|..|.- .
T Consensus 163 kAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKL 242 (877)
T KOG1059|consen 163 KAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKL 242 (877)
T ss_pred HHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHH
Confidence 5677888888889999999999999999999999999999999988865544443333333321 1
Q ss_pred HhhhcCCChhHHHHHHHHhHHHHhc----------------------CCCCCC-hHHHHHHHHhhhCCChhHHHHHHHHH
Q 000321 301 LKRLTDRIVAVRMSVLEHVKSCLLT----------------------DPSRAD-APQILTALCDRLLDFDENVRKQVVAV 357 (1670)
Q Consensus 301 L~R~~D~s~~VR~~~v~~~~~iL~~----------------------~p~~~~-~~eii~~L~~rL~D~DEkVR~aaVka 357 (1670)
.+...=..|..+...++-.-.++.+ +|.+.. ++-.+..|...+-|+|.+.+.-.+-+
T Consensus 243 F~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLla 322 (877)
T KOG1059|consen 243 FAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLA 322 (877)
T ss_pred HhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHH
Confidence 2344455666666555443332221 223222 22334778888999999999999999
Q ss_pred HHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 000321 358 ICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFR 401 (1670)
Q Consensus 358 i~~la~~~l~~Vs~elL~~laeR~RDKK~~VR~eAm~~La~LY~ 401 (1670)
++.++..++..|... ...+..-+-||..+||-.|+..|--+-+
T Consensus 323 m~KI~ktHp~~Vqa~-kdlIlrcL~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 323 MSKILKTHPKAVQAH-KDLILRCLDDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred HHHHhhhCHHHHHHh-HHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence 999999998887653 1223455678999999999887644433
No 104
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=72.17 E-value=2.9e+02 Score=35.40 Aligned_cols=64 Identities=16% Similarity=0.095 Sum_probs=40.6
Q ss_pred CCCcchHHHHHHHHHHHHhhcCCC-CCCChhHH---HHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhh
Q 000321 59 HQDKDVKLLVATCICEITRITAPE-APYSDDVL---KDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYR 126 (1670)
Q Consensus 59 HkD~~Vra~vAcCLadIlRI~APd-aPytd~~L---kdIF~lfi~qf~~L~d~~~p~f~q~~~LLe~La~vk 126 (1670)
....++..|+-.-|.|+++- .|. +++--+.. .++|.-|+..|. ..+.+-....+++|..+....
T Consensus 65 ~~~~d~vqyvL~Li~dll~~-~~~~~~~f~~~~~~~~~~~~~fl~lL~---~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 65 IDKDDTVRYVLTLIDDMLQE-DDTRVKLFHDDALLKKKTWEPFFNLLN---RQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred cCcHHHHHHHHHHHHHHHHh-chHHHHHHHHHhhccccchHHHHHHHc---CCchhHHHHHHHHHHHHHhcC
Confidence 35567999999999999997 222 11111111 466777777553 345556667778887776543
No 105
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=72.14 E-value=27 Score=47.17 Aligned_cols=123 Identities=21% Similarity=0.245 Sum_probs=91.2
Q ss_pred cchHHHHHHHHHhhCchh-----hhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHH-HHHhhhcCC
Q 000321 234 HIDYHEVIYDVYRCSPQI-----LSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFS-EFLKRLTDR 307 (1670)
Q Consensus 234 ~~~~h~Li~eL~~~~P~l-----L~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~-~fL~R~~D~ 307 (1670)
.-.+|+.+--+-.-.|.- +...+|.|=+-|.-.|+.+|+-+++++-..+-..+ .+...|-+|+- .+|.=..|-
T Consensus 884 K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~-tL~t~~~~Tlvp~lLsls~~~ 962 (1030)
T KOG1967|consen 884 KHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE-TLQTEHLSTLVPYLLSLSSDN 962 (1030)
T ss_pred hhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc-ccchHHHhHHHHHHHhcCCCC
Confidence 334677777766666652 12356677788999999999999999998877655 57777766554 666655555
Q ss_pred C---hhHHHHHHHHhHHHHhcCCCC---CChHHHHHHHHhhhCCChhHHHHHHHHH
Q 000321 308 I---VAVRMSVLEHVKSCLLTDPSR---ADAPQILTALCDRLLDFDENVRKQVVAV 357 (1670)
Q Consensus 308 s---~~VR~~~v~~~~~iL~~~p~~---~~~~eii~~L~~rL~D~DEkVR~aaVka 357 (1670)
+ ..||...+++...+..--|.+ ....+++.+|...|-|+--.||.+||.+
T Consensus 963 ~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 963 DNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred CcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 5 789999999987755533432 2345899999999999999999998765
No 106
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=71.19 E-value=2e+02 Score=36.02 Aligned_cols=239 Identities=18% Similarity=0.190 Sum_probs=127.5
Q ss_pred hcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh-cCCCC
Q 000321 292 QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-LNSIP 370 (1670)
Q Consensus 292 ~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~-l~~Vs 370 (1670)
+|-+-|..-|+-..--+-+=|++ .++++.+...-|+. +.+-+++-.+..-|-|-.||.+|++.+-.++.-. +.-|.
T Consensus 22 q~v~~y~~il~~~k~~~k~k~la-sq~ip~~fk~fp~l--a~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~ 98 (460)
T KOG2213|consen 22 QHVDDYEGILKAVKGTSKEKRLA-SQFIPRFFKHFPSL--ADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVN 98 (460)
T ss_pred hhHHHHHHHHHHhhcchHHHHHH-HHHHHHHHhhCchh--hhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhH
Confidence 66666777776666555555554 56777766666754 5578888889999999999999887765544431 11122
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCcchhccccchHHHhhhhccCCCCchhHHHHhhccCcCCC
Q 000321 371 VETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTG 450 (1670)
Q Consensus 371 ~elL~~laeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~~wIPs~IL~~~Y~nD~~~~lVE~vL~e~LlP~~ 450 (1670)
..+.+.|- =-.|+.||...-. .+...-...+..|-++| +|+.
T Consensus 99 d~l~qLLn--------------k~sl~~Lf~~~~~--~D~~irek~l~fi~tKl----------------------~~l~ 140 (460)
T KOG2213|consen 99 DVLVQLLN--------------KASLTGLFGQIEV--GDEQIREKVLKFIRTKL----------------------ITLK 140 (460)
T ss_pred HHHHHHHH--------------HHHHHHHHhhhhh--hhHHHHHHHHHHHHHHh----------------------hccc
Confidence 22222221 2234555554311 00000011223333333 3322
Q ss_pred CC--HHHH----HHHHHHHHhcCCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhcCC-----CcHHHHHHHHHH
Q 000321 451 FS--VKDR----VRHWVRIFSGFDRIEMKALEKILEQKQRLQ-----QEMQRYLSLRQMHQDG-----DAPEIQKKILFC 514 (1670)
Q Consensus 451 ~~--~~~R----~~~ll~l~~~LD~~~~kal~~il~~k~~l~-----~~~~~~l~l~~~~~~~-----d~~ei~~kl~~~ 514 (1670)
.. .++- +.-.-..+.+.+..++.+|..||..-..++ ..|+++.+--+...+- ..++.-.++-+|
T Consensus 141 ~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k~~~a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisC 220 (460)
T KOG2213|consen 141 GEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQTKAGEARLQELAEEQEGLADLDAFNVSDADYVDRFISC 220 (460)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhhhhccCcccCCChHHHHHHHHH
Confidence 11 1111 112224456677778888888887766665 3455554433322211 234455556566
Q ss_pred HHHHHhhcCCchHHHHHHH---------HHHhhccHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHh
Q 000321 515 FRVMSRSFAEPAKAEENFL---------ILDQLKDANVWKILMNL--LDSNTSFDQAFTGRDDLLKIL 571 (1670)
Q Consensus 515 I~~Ls~~FPDp~Ka~~~L~---------kf~kLnD~RiykLLk~~--id~~td~~t~~~a~~ELlkkL 571 (1670)
...-.-+|.-..+....+. .|+++-+.|=..+||.+ |++.|+.+.+......++..|
T Consensus 221 l~~AvPfFargapSskf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMss~ttaq~a~q~Lpsi~elL 288 (460)
T KOG2213|consen 221 LLMAVPFFARGAPSSKFVEYLNKHIIPHHFDKLTEERKLDLLKALAEMSSYTTAQAARQMLPSIVELL 288 (460)
T ss_pred HHHhhhhhhcCCchhHHHHHHHhhhcccccccchHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
Confidence 5555566666555544443 35566688888888888 556665554443333333333
No 107
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=70.55 E-value=1.3e+02 Score=35.69 Aligned_cols=145 Identities=14% Similarity=0.194 Sum_probs=84.9
Q ss_pred hhhhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhCc---hhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCC
Q 000321 209 AGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSP---QILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP 285 (1670)
Q Consensus 209 ~dkL~~~I~qyf~~il~~~~~~~~~~~~~h~Li~eL~~~~P---~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~ 285 (1670)
..+++.||.+-...++... -.+........++..| .+.+ .++.+.||.+-.-|.+.++.+|..|.++|..|-..|
T Consensus 88 ~~~Ik~~i~~Vc~~~~s~~-lns~~Q~agLrlL~nL-tv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np 165 (254)
T PF04826_consen 88 QEQIKMYIPQVCEETVSSP-LNSEVQLAGLRLLTNL-TVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENP 165 (254)
T ss_pred HHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHcc-CCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCH
Confidence 3445555555554444431 1111112233444444 1222 345566777766678899999999999998776665
Q ss_pred CC---CchhhcHHHHHHHHhhhcCCChhHHHH-HHHHhHHHHhcCCC---------------CCChHHHHHHHHhhhCCC
Q 000321 286 GS---ANNEQFHSVFSEFLKRLTDRIVAVRMS-VLEHVKSCLLTDPS---------------RADAPQILTALCDRLLDF 346 (1670)
Q Consensus 286 ~~---~~~~~y~~~w~~fL~R~~D~s~~VR~~-~v~~~~~iL~~~p~---------------~~~~~eii~~L~~rL~D~ 346 (1670)
.. -+..+=++-|..++.+-.+.+.-+|+. |++.+...+..... ..+.+.+.+.|......+
T Consensus 166 ~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~ 245 (254)
T PF04826_consen 166 DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHP 245 (254)
T ss_pred HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcCC
Confidence 21 123344667777777877777777765 44444444433210 123455667777778889
Q ss_pred hhHHHHHHH
Q 000321 347 DENVRKQVV 355 (1670)
Q Consensus 347 DEkVR~aaV 355 (1670)
|+.||.+||
T Consensus 246 d~ev~~~v~ 254 (254)
T PF04826_consen 246 DPEVKEQVI 254 (254)
T ss_pred CHHHhhhcC
Confidence 999998864
No 108
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=70.53 E-value=5.2 Score=34.27 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=28.5
Q ss_pred HHHhhhhhcCCCCH-HHHHHHHHhhccCChhHHHHHHHHH
Q 000321 358 ICDVACHALNSIPV-ETVKLVAERLRDKSVLVKRYTMERL 396 (1670)
Q Consensus 358 i~~la~~~l~~Vs~-elL~~laeR~RDKK~~VR~eAm~~L 396 (1670)
+..+....+..... .++..+..|+.|.++.||+.|++.|
T Consensus 3 l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 3 LSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 44444444444433 5778999999999999999998764
No 109
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=68.97 E-value=6.7 Score=50.31 Aligned_cols=105 Identities=16% Similarity=0.128 Sum_probs=71.7
Q ss_pred HHHHH-HHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHH
Q 000321 294 HSVFS-EFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE 372 (1670)
Q Consensus 294 ~~~w~-~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~Vs~e 372 (1670)
.+++. .|..|..|+++.||+.|+.+....+.+-|+--.-.-.+.++.=-|.|..+.||+.+++.+--+..+.++. .
T Consensus 273 ~dicdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~-d-- 349 (740)
T COG5537 273 KDICDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHT-D-- 349 (740)
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcc-h--
Confidence 34444 7999999999999999999998888776642111123345555699999999999999986655544331 1
Q ss_pred HHHHHHHhhc---------cCChhHHHHHHHHHHHHHHH
Q 000321 373 TVKLVAERLR---------DKSVLVKRYTMERLADIFRG 402 (1670)
Q Consensus 373 lL~~laeR~R---------DKK~~VR~eAm~~La~LY~~ 402 (1670)
.++.+.+|-. |=.. ||-.+++.|..+--.
T Consensus 350 ~ir~f~eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~l 387 (740)
T COG5537 350 AIRRFVERFKDRILEFLRTDSDC-VRICSIKSLCYLRIL 387 (740)
T ss_pred HHHHHHHHHHHHHHHHHhhccch-hhHHHHHHHHHHHHh
Confidence 3444444443 4444 888888888766543
No 110
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=68.72 E-value=57 Score=43.05 Aligned_cols=219 Identities=16% Similarity=0.153 Sum_probs=115.0
Q ss_pred HHHHHHhhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhhhhHHH-HHHHHH
Q 000321 143 MYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAG-IKQFLV 221 (1670)
Q Consensus 143 lF~~ff~~v~~~~~~~V~~~m~~IL~~vIeEse~vp~~vLd~IL~~l~~~~~~~a~~lA~~v~~~~~dkL~~~-I~qyf~ 221 (1670)
.|-.+..++|.-..+.+. .+...+.... -......+++..+....+.+|..+..++|.. .++... ..++|.
T Consensus 348 ~f~~Lv~~lr~l~~~~L~----~l~~~~~~~~--~~~~~r~~~lDal~~aGT~~av~~i~~~I~~--~~~~~~ea~~~l~ 419 (618)
T PF01347_consen 348 KFSRLVRLLRTLSYEDLE----ELYKQLKSKS--KKEQARKIFLDALPQAGTNPAVKFIKDLIKS--KKLTDDEAAQLLA 419 (618)
T ss_dssp HHHHHHHHHTTS-HHHHH----HHHHHHTTS-----HHHHHHHHHHHHHH-SHHHHHHHHHHHHT--T-S-HHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHH----HHHHHHHhhc--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc--CCCCHHHHHHHHH
Confidence 355555555543333322 2223332221 1233444455555444455777777777766 333222 223333
Q ss_pred HhhcCCCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcC----C---------CCC
Q 000321 222 SSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAV----P---------GSA 288 (1670)
Q Consensus 222 ~il~~~~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~----~---------~~~ 288 (1670)
.+.. -+-+-.+++|..+.+.+.......+..+|..|.-.+|.|.-. . ...
T Consensus 420 ~l~~-----------------~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~ 482 (618)
T PF01347_consen 420 SLPF-----------------HVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRC 482 (618)
T ss_dssp HHHH-----------------T-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS
T ss_pred HHHh-----------------hcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchh
Confidence 2211 111233455555555555554456778888888888877632 1 223
Q ss_pred chhhcHHHHHHHHhh-hcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCC---hhHHHHHHHHHHHHhhhh
Q 000321 289 NNEQFHSVFSEFLKR-LTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDF---DENVRKQVVAVICDVACH 364 (1670)
Q Consensus 289 ~~~~y~~~w~~fL~R-~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~eii~~L~~rL~D~---DEkVR~aaVkai~~la~~ 364 (1670)
....|-.-+...|+. ....+..-++.++++++++= +| .++..|...+.+. ...||.+||.++..++..
T Consensus 483 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g--~~------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~ 554 (618)
T PF01347_consen 483 IIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLG--HP------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH 554 (618)
T ss_dssp --GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---G------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT
T ss_pred hHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccC--Cc------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc
Confidence 455665555555553 34567789999999999742 22 4667777777666 899999998888655443
Q ss_pred hcCCCCHHHHHHHHHhhccCC--hhHHHHHHHHHHH
Q 000321 365 ALNSIPVETVKLVAERLRDKS--VLVKRYTMERLAD 398 (1670)
Q Consensus 365 ~l~~Vs~elL~~laeR~RDKK--~~VR~eAm~~La~ 398 (1670)
. |..+...+..-..|.. +.||-.|...|.+
T Consensus 555 ~----~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 555 C----PEKVREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp -----HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred C----cHHHHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 3 3344444444444443 6799988877765
No 111
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=68.62 E-value=2.4e+02 Score=37.19 Aligned_cols=259 Identities=18% Similarity=0.238 Sum_probs=152.0
Q ss_pred HHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHhccc-----ccccHHHHHHHHHHhcCCCcH--HHHHHHHHHHHHhh-
Q 000321 138 ELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEES-----EDIQEDLLVILLSALGRNKND--TARRLAMNVIEQCA- 209 (1670)
Q Consensus 138 ~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vIeEs-----e~vp~~vLd~IL~~l~~~~~~--~a~~lA~~v~~~~~- 209 (1670)
+.+.++|.-+..-++. |-.++...++.-|..+|--. ..-..+...+++..|...... .--.+..++|.+..
T Consensus 395 e~fd~vl~pLw~g~~~-hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~ 473 (975)
T COG5181 395 EQFDEVLCPLWEGASQ-HRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGT 473 (975)
T ss_pred HHHHHHHHHHHHHHHh-cCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCC
Confidence 3344444444444432 33344445555555544322 245667888888888543221 33344445554332
Q ss_pred ---hhhHHHH-HHHHHHh----hcCCCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHh
Q 000321 210 ---GKLEAGI-KQFLVSS----MSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDL 281 (1670)
Q Consensus 210 ---dkL~~~I-~qyf~~i----l~~~~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~m 281 (1670)
.++...| +-||.-. +.+| .++....-+-.++..=.--+|.+.--++-+ ++.+-+..|..++.++.++
T Consensus 474 ~tp~~lr~~v~pefF~~fw~rr~A~d-r~~~k~v~~ttvilAk~~g~~~v~~kil~~----~~De~ep~r~m~a~~vsri 548 (975)
T COG5181 474 DTPWKLRDQVSPEFFSPFWRRRSAGD-RRSYKQVVLTTVILAKMGGDPRVSRKILEY----YSDEPEPYRKMNAGLVSRI 548 (975)
T ss_pred CCHHHHHHhhcHHhhchHHHhhhccc-ccccceeehhHHHHHHHcCChHHHHHHHhh----ccCCcchhhhhhhHHHHHH
Confidence 2233333 2344322 2222 222223333444444444567666665544 5557889999999999999
Q ss_pred hcCCCCC-c----------------------------------------hhhc-HHHHHHHHhhhcCCChhHHHHHHHHh
Q 000321 282 FAVPGSA-N----------------------------------------NEQF-HSVFSEFLKRLTDRIVAVRMSVLEHV 319 (1670)
Q Consensus 282 fs~~~~~-~----------------------------------------~~~y-~~~w~~fL~R~~D~s~~VR~~~v~~~ 319 (1670)
|+.-|.. | .+-| +.+-..-|++.+-+.|.||+...+.+
T Consensus 549 ~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~ 628 (975)
T COG5181 549 FSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLM 628 (975)
T ss_pred HHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 9876421 1 1122 67788899999999999999988877
Q ss_pred HHHHh--cCCC-CCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhh-hhcCCC--CH-HHHHHHHHhhccCChhHHHHH
Q 000321 320 KSCLL--TDPS-RADAPQILTALCDRLLDFDENVRKQVVAVICDVAC-HALNSI--PV-ETVKLVAERLRDKSVLVKRYT 392 (1670)
Q Consensus 320 ~~iL~--~~p~-~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~-~~l~~V--s~-elL~~laeR~RDKK~~VR~eA 392 (1670)
+.+.. .+.. ..+..-+-..|-+-|-.-+..|=-.+++|||.+-. +.|... |. .+|-++.--+|.|...|-..+
T Consensus 629 ~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nt 708 (975)
T COG5181 629 GSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANT 708 (975)
T ss_pred HHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhH
Confidence 76432 2221 11111122345556667778888888899988754 556544 22 356677788899999999999
Q ss_pred HHHHHHHHHH
Q 000321 393 MERLADIFRG 402 (1670)
Q Consensus 393 m~~La~LY~~ 402 (1670)
|..+|.+-..
T Consensus 709 i~lvg~I~~~ 718 (975)
T COG5181 709 IALVGTICMN 718 (975)
T ss_pred HHHHHHHHhc
Confidence 9998888664
No 112
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.61 E-value=3.8e+02 Score=35.01 Aligned_cols=170 Identities=17% Similarity=0.157 Sum_probs=107.9
Q ss_pred hhcccccCCChHHHHHHHHHHHHhhcCCC---CCchhhc--HHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCC---
Q 000321 258 YLTGELLTDQLDTRLKAVGLVGDLFAVPG---SANNEQF--HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR--- 329 (1670)
Q Consensus 258 ~Le~EL~sed~~~Rl~At~llG~mfs~~~---~~~~~~y--~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~--- 329 (1670)
.+-..+.+++.+.++.|+..+-+++|... .+.+-.. =+.+-.||+| |..+.+|.+..=++.+|-.-....
T Consensus 70 ~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~--~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 70 LMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSR--DDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHcc--CCChhHHHHHHHHHHHHhcCchhhccc
Confidence 33344668999999999999999999753 1211111 2456677775 455777776665665654422211
Q ss_pred CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCC----CCHHHHHHHHHhh-ccCChhHHHHHHHHHHHHHHHHh
Q 000321 330 ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS----IPVETVKLVAERL-RDKSVLVKRYTMERLADIFRGCC 404 (1670)
Q Consensus 330 ~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~----Vs~elL~~laeR~-RDKK~~VR~eAm~~La~LY~~~~ 404 (1670)
-.....+..|...|..+++.||-+||-+++.+|-..... +.-..+..|..-+ .+.+....+.++=+|.+|.+.-
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk- 226 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK- 226 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCC-
Confidence 011134567889999999999999999999998755331 2223333333333 3333467777788888887642
Q ss_pred hhccCCCcchhccccchHHHhhhhccCCCC
Q 000321 405 LRNFNGSINQNEFEWIPGKILRCLYDKDFG 434 (1670)
Q Consensus 405 ~~~~~~~~~~~~~~wIPs~IL~~~Y~nD~~ 434 (1670)
+.+.....+.-|=..|+.+.|..|.+
T Consensus 227 ----~P~P~~~~v~~iLp~L~~ll~~~D~~ 252 (514)
T KOG0166|consen 227 ----NPSPPFDVVAPILPALLRLLHSTDEE 252 (514)
T ss_pred ----CCCCcHHHHHHHHHHHHHHHhcCCHH
Confidence 23334456777777888888887754
No 113
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=67.49 E-value=9.8 Score=30.13 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=24.2
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000321 374 VKLVAERLRDKSVLVKRYTMERLADIFRG 402 (1670)
Q Consensus 374 L~~laeR~RDKK~~VR~eAm~~La~LY~~ 402 (1670)
+-.+.+.+.|..+.||..|...|+.+.+.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 44567889999999999999999999863
No 114
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=66.51 E-value=9.8 Score=35.80 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=27.1
Q ss_pred ccceEEEecCCC---CceEEEEEEEecCCCCeeEEEccC
Q 000321 1372 IGYRIKVWWPMD---KQFYEGTIKSYDPIKKKHVILYDD 1407 (1670)
Q Consensus 1372 vG~rv~V~Wp~D---~~~Y~G~V~~y~~~~~~H~v~YdD 1407 (1670)
.|.+|.|.--.+ .+||.|+|....... +..|.|+|
T Consensus 3 ~G~~VEV~s~e~g~~gaWf~a~V~~~~~~~-~~~V~Y~~ 40 (68)
T PF05641_consen 3 KGDEVEVSSDEDGFRGAWFPATVLKENGDD-KYLVEYDD 40 (68)
T ss_dssp TT-EEEEEE-SBTT--EEEEEEEEEEETT--EEEEEETT
T ss_pred CCCEEEEEEcCCCCCcEEEEEEEEEeCCCc-EEEEEECC
Confidence 588999987664 599999999999876 99999964
No 115
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=66.02 E-value=1.1e+02 Score=42.48 Aligned_cols=137 Identities=15% Similarity=0.140 Sum_probs=84.8
Q ss_pred CchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCC-CchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcC
Q 000321 248 SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGS-ANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD 326 (1670)
Q Consensus 248 ~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~-~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~ 326 (1670)
.+.++.--+.+|+.. ...-+|+=+.-+||+++..-.. .+.=..-......+.=..|-.|+||++.|-+.+.+|.+-
T Consensus 597 ~~~li~iCle~lnd~---~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 597 NGNLIGICLEHLNDD---PEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred cccHHHHHHHHhcCC---ccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 444444333343332 2688999999999999986432 222233344555666778999999999999999988864
Q ss_pred CCCCChHHHHHHHHhhhCC-ChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHh
Q 000321 327 PSRADAPQILTALCDRLLD-FDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCC 404 (1670)
Q Consensus 327 p~~~~~~eii~~L~~rL~D-~DEkVR~aaVkai~~la~~~l~~Vs~elL~~laeR~RDKK~~VR~eAm~~La~LY~~~~ 404 (1670)
..+-++ -....+.+.| +|++++.+-. ....+-.++.++.|=.+-||.+-...|+.+-..|.
T Consensus 674 ~d~fde---~~~~~~~~~~l~~~~~~~E~~--------------i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~ 735 (1387)
T KOG1517|consen 674 SDNFDE---QTLVVEEEIDLDDERTSIEDL--------------IIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYV 735 (1387)
T ss_pred ccccch---hhhhhhhhhcchhhhhhHHHH--------------HHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhH
Confidence 321111 1122233444 4444444311 11112356789999999999998888888766553
No 116
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=65.65 E-value=81 Score=41.39 Aligned_cols=96 Identities=21% Similarity=0.151 Sum_probs=59.0
Q ss_pred CchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCC
Q 000321 248 SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDP 327 (1670)
Q Consensus 248 ~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p 327 (1670)
.|..+....|+++.. ..-...+|..|+..|.++-... -....+-+|.-|+.+- ..++||++.+-.+ +.++|
T Consensus 475 ~~~~i~~l~~~l~~~-~~~~~~iR~~Av~Alr~~a~~~---p~~v~~~l~~i~~n~~--e~~EvRiaA~~~l---m~t~P 545 (574)
T smart00638 475 HPSSIKVLEPYLEGA-EPLSTFIRLAAILALRNLAKRD---PRKVQEVLLPIYLNRA--EPPEVRMAAVLVL---METKP 545 (574)
T ss_pred ChhHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHhC---chHHHHHHHHHHcCCC--CChHHHHHHHHHH---HhcCC
Confidence 566666677777622 2235678999999998774321 1244556777776654 4577998877654 45667
Q ss_pred CCCChHHHHHHHHhhhCCChhHHHHHHH
Q 000321 328 SRADAPQILTALCDRLLDFDENVRKQVV 355 (1670)
Q Consensus 328 ~~~~~~eii~~L~~rL~D~DEkVR~aaV 355 (1670)
+... +-......-.|++..|+..+.
T Consensus 546 ~~~~---l~~ia~~l~~E~~~QV~sfv~ 570 (574)
T smart00638 546 SVAL---LQRIAELLNKEPNLQVASFVY 570 (574)
T ss_pred CHHH---HHHHHHHHhhcCcHHHHHHhH
Confidence 6422 223333344688888887643
No 117
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=65.63 E-value=5.3e+02 Score=35.93 Aligned_cols=70 Identities=17% Similarity=0.188 Sum_probs=55.5
Q ss_pred hhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHH
Q 000321 290 NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICD 360 (1670)
Q Consensus 290 ~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~ 360 (1670)
++.--.+|+-.-.|..|+.+.||...+-....||..... .....|+.++..--+|+---||.+++-++..
T Consensus 467 v~evg~~~~~~~~rClDkaaavR~~al~s~tk~l~l~~~-~~~~sIl~~~inS~~d~~fs~ves~~~~~~~ 536 (1529)
T KOG0413|consen 467 VKEVGVLYNIVYMRCLDKAAAVRLHALNSLTKILQLQSH-REAFSILCATINSEMDEKFSAVESLEDLNVS 536 (1529)
T ss_pred hhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc-cchHHHHHHhcCCccccchhHHHhchhhhhc
Confidence 344457888888999999999999999998888875433 3456888998888899988888887776643
No 118
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=65.48 E-value=42 Score=46.02 Aligned_cols=92 Identities=23% Similarity=0.409 Sum_probs=73.7
Q ss_pred HHHHHHHHHhhCchhhhhhhhhhcccccC-------CChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCCh
Q 000321 237 YHEVIYDVYRCSPQILSGVVPYLTGELLT-------DQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIV 309 (1670)
Q Consensus 237 ~h~Li~eL~~~~P~lL~~ViP~Le~EL~s-------ed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~ 309 (1670)
+-.++..|+.|-|++-..++-+|..+... -+...++..++.+|+|..-.-......+ ++...+|.-|.=.+.
T Consensus 481 YsRlVAtl~~~M~dvat~lv~~L~~eFr~~~hkK~q~~ietk~~~VrfIsEL~KF~lv~~~~if-~cLk~ll~dF~~hnI 559 (1128)
T KOG2051|consen 481 YSRLVATLSKCMPDVATELVTMLRKEFRSHLHKKAQINIETKLKIVRFISELCKFQLVPKFEIF-SCLKMLLNDFTHHNI 559 (1128)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHhhhhhCccChHHHH-HHHHHHHHhcccccH
Confidence 45789999999999999999999888753 3688899999999999876422222222 356778888988999
Q ss_pred hHHHHHHHHhHHHHhcCCCC
Q 000321 310 AVRMSVLEHVKSCLLTDPSR 329 (1670)
Q Consensus 310 ~VR~~~v~~~~~iL~~~p~~ 329 (1670)
++=+.+++.|+.+|.++|..
T Consensus 560 Em~c~lLE~~GrfLlr~pEt 579 (1128)
T KOG2051|consen 560 EMACVLLESCGRFLLRSPET 579 (1128)
T ss_pred HHHHHHHHhcchhhhcChhH
Confidence 99999999999999999863
No 119
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=65.07 E-value=7 Score=51.59 Aligned_cols=46 Identities=26% Similarity=0.554 Sum_probs=36.7
Q ss_pred CccccceEEEecCC----CCceEEEEEEEecCCCC--------eeEEEccCCcceeee
Q 000321 1369 EDLIGYRIKVWWPM----DKQFYEGTIKSYDPIKK--------KHVILYDDEDVEVLR 1414 (1670)
Q Consensus 1369 ~~lvG~rv~V~Wp~----D~~~Y~G~V~~y~~~~~--------~H~v~YdDGd~E~l~ 1414 (1670)
+.-.+-+|||||-+ |.+|++|+|-+.-|..- ++.|+||.|+.|.+.
T Consensus 978 nW~~~d~crvwwrda~~e~g~WWeG~ils~~pksp~fpdSpwery~v~~~~~e~~~~s 1035 (1113)
T KOG0644|consen 978 NWTCRDKCRVWWRDAGEEDGAWWEGRILSVKPKSPDFPDSPWERYIVRYDNTETELHS 1035 (1113)
T ss_pred ccccccceeEEEccCCCcCCceeeeeeeeccCCCCCCCCCcceeEEEEecCCcccccC
Confidence 34478999999986 57899999999776543 689999999766554
No 120
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=64.77 E-value=64 Score=40.25 Aligned_cols=185 Identities=17% Similarity=0.279 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCChhhHHHH-HH----HHHhhhhhe--------eeccCC-chHHH----HHHHHHHHh
Q 000321 88 DVLKDIFQLIVGTFSGLKDTGGPSFGRRVVI-LE----TLAKYRSCV--------VMLDLE-CDELV----NEMYSTFFA 149 (1670)
Q Consensus 88 ~~LkdIF~lfi~qf~~L~d~~~p~f~q~~~L-Le----~La~vks~v--------l~~DL~-~~~Li----~~lF~~ff~ 149 (1670)
.-++++|.+|+.-+..+.-..++|-.|..-= +. .+.-..... +.++-+ ..++. ..+=..|+.
T Consensus 139 ~ai~k~lpl~lqGl~~~~~~~dayL~~~l~~ii~~y~~~Fl~~~~~~~~~~l~~~~~~~~~~~~~l~~~il~~i~~~fl~ 218 (373)
T PF14911_consen 139 QAIRKSLPLFLQGLGRLSQRQDAYLNQQLRNIIQQYLPRFLPASPSKLVARLSTLLSAFTPRNEELRKFILQVIRSNFLE 218 (373)
T ss_pred HHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHhHhccCCCccccccccccccchhhhhhHHHHHHHHHHHHHHhc
Confidence 3489999999998888887788887665321 11 111111111 122222 12222 222223333
Q ss_pred hhcCCChhhHHHHHHHHHHHHhcc----cccccHHHHHHHH----HHhcCCC-c----HHHHHHHHHHHHHhh-------
Q 000321 150 VASDDHPESVLSSMQTIMIVLLEE----SEDIQEDLLVILL----SALGRNK-N----DTARRLAMNVIEQCA------- 209 (1670)
Q Consensus 150 ~v~~~~~~~V~~~m~~IL~~vIeE----se~vp~~vLd~IL----~~l~~~~-~----~~a~~lA~~v~~~~~------- 209 (1670)
. .+.-|+.=...+..++.+++++ ....-..+++.++ ..+.--. . .-|-.+-..+++.|.
T Consensus 219 ~-~~~~p~p~l~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~~~~~~~ 297 (373)
T PF14911_consen 219 F-KGSAPPPRLASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQVGSSGEP 297 (373)
T ss_pred C-CCCCCCCcHHHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHcccccCcchH
Confidence 2 2222322233334444455555 2222222233222 2221111 1 133333334444443
Q ss_pred -hhhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhcccccC--------CChHHHHHHHHHHH
Q 000321 210 -GKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLT--------DQLDTRLKAVGLVG 279 (1670)
Q Consensus 210 -dkL~~~I~qyf~~il~~~~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~s--------ed~~~Rl~At~llG 279 (1670)
+.|+..+++|..+-+. -....++.++..|...+|+++.+.||+|+.+|.. +|...|..=-++++
T Consensus 298 ~~~l~s~lrsfvqk~l~------~~t~~~f~~l~~vA~l~p~lV~~Lip~i~q~l~~~E~kRG~G~d~~lR~~~~rL~~ 370 (373)
T PF14911_consen 298 REQLTSVLRSFVQKYLA------HYTYQYFQFLEKVAELDPQLVISLIPTIRQSLKDSERKRGLGRDVALRKALSRLLS 370 (373)
T ss_pred HHHHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 4455555555543211 1223689999999999999999999999998863 36667766555554
No 121
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=64.77 E-value=1.3e+02 Score=36.69 Aligned_cols=150 Identities=17% Similarity=0.187 Sum_probs=93.2
Q ss_pred hhhhhcccccCCChHHHHHHHHHHHHhhcC--CCCCchhhcHHHHHHHHhhhcCCC--hhHHHHHHHHhHHHHhcC-CCC
Q 000321 255 VVPYLTGELLTDQLDTRLKAVGLVGDLFAV--PGSANNEQFHSVFSEFLKRLTDRI--VAVRMSVLEHVKSCLLTD-PSR 329 (1670)
Q Consensus 255 ViP~Le~EL~sed~~~Rl~At~llG~mfs~--~~~~~~~~y~~~w~~fL~R~~D~s--~~VR~~~v~~~~~iL~~~-p~~ 329 (1670)
++.+++.-|+......+.+|.+++|-+.-. +|..-..-|..+...+..-..|.+ +.+|.+|+.+.+-+..-. .+.
T Consensus 87 L~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~ 166 (309)
T PF05004_consen 87 LLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDE 166 (309)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCCh
Confidence 344555556666668889999999977544 345555666666665555556655 578999988776543322 222
Q ss_pred CChHHHHHHHHhh----hC--CC---------hhHHHHHHHHHHHHhhhhhc----CCCCHHHHHHHHHhhccCChhHHH
Q 000321 330 ADAPQILTALCDR----LL--DF---------DENVRKQVVAVICDVACHAL----NSIPVETVKLVAERLRDKSVLVKR 390 (1670)
Q Consensus 330 ~~~~eii~~L~~r----L~--D~---------DEkVR~aaVkai~~la~~~l----~~Vs~elL~~laeR~RDKK~~VR~ 390 (1670)
.+..++++.|..- .. |. +..|..+|+.+.+=+..... ...-.+.+..+.+.+--....||.
T Consensus 167 ~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRi 246 (309)
T PF05004_consen 167 EETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRI 246 (309)
T ss_pred hHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 3333333444411 11 21 35688888888766653221 112223455667777777889999
Q ss_pred HHHHHHHHHHHHHh
Q 000321 391 YTMERLADIFRGCC 404 (1670)
Q Consensus 391 eAm~~La~LY~~~~ 404 (1670)
.|=+.||-||-..+
T Consensus 247 AAGEaiAll~E~~~ 260 (309)
T PF05004_consen 247 AAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999865
No 122
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=64.55 E-value=23 Score=35.56 Aligned_cols=84 Identities=18% Similarity=0.219 Sum_probs=71.6
Q ss_pred cccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHH
Q 000321 260 TGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTAL 339 (1670)
Q Consensus 260 e~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~eii~~L 339 (1670)
-.+|....+++|-.+..+|.+++..+. .....-+.+...|+.=..|.++=|=+.+|+....+...+|. ++++.|
T Consensus 9 l~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~-----~vl~~L 82 (92)
T PF10363_consen 9 LSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD-----EVLPIL 82 (92)
T ss_pred HHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH-----HHHHHH
Confidence 345677889999999999999999876 34556789999999999999999999999999888777763 688999
Q ss_pred HhhhCCChhH
Q 000321 340 CDRLLDFDEN 349 (1670)
Q Consensus 340 ~~rL~D~DEk 349 (1670)
.+...|.+++
T Consensus 83 ~~~y~~~~~~ 92 (92)
T PF10363_consen 83 LDEYADPSEQ 92 (92)
T ss_pred HHHHhCcccC
Confidence 9988887753
No 123
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.39 E-value=4.5e+02 Score=34.62 Aligned_cols=269 Identities=13% Similarity=0.149 Sum_probs=164.7
Q ss_pred hhhhheeeccCC-chHHHHHHHHHHHhhhcCCChh-hHHHHHHHHHHHHhcccccccHHHHHHHHHHhcCCCcH------
Q 000321 124 KYRSCVVMLDLE-CDELVNEMYSTFFAVASDDHPE-SVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKND------ 195 (1670)
Q Consensus 124 ~vks~vl~~DL~-~~~Li~~lF~~ff~~v~~~~~~-~V~~~m~~IL~~vIeEse~vp~~vLd~IL~~l~~~~~~------ 195 (1670)
-||-++.-.|.+ -+.+|.++-..|--.-..++.+ .+....+-.+..=++... .-..++-.+++.|......
T Consensus 27 ~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~-Y~~~iv~Pv~~cf~D~d~~vRyyAC 105 (675)
T KOG0212|consen 27 LVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAG-YLEKIVPPVLNCFSDQDSQVRYYAC 105 (675)
T ss_pred HHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHH-HHHHhhHHHHHhccCccceeeeHhH
Confidence 344555544444 2456666666554322222222 122222222222222222 4566777788888644321
Q ss_pred -HHHHHHHHHHHHhhhhhHHHHHHHHHHhh------cCCCCCCCCcchHHHHHHHHHhh-----C-chhhhhhhhhhccc
Q 000321 196 -TARRLAMNVIEQCAGKLEAGIKQFLVSSM------SGDSRPGHSHIDYHEVIYDVYRC-----S-PQILSGVVPYLTGE 262 (1670)
Q Consensus 196 -~a~~lA~~v~~~~~dkL~~~I~qyf~~il------~~~~~~~~~~~~~h~Li~eL~~~-----~-P~lL~~ViP~Le~E 262 (1670)
+.|++|+- |- ..+-.||+.+. ..|+.. .....-+|+-.|.+- + -=-|...||.|.+-
T Consensus 106 EsLYNiaKv----~k----~~v~~~Fn~iFdvL~klsaDsd~--~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~er 175 (675)
T KOG0212|consen 106 ESLYNIAKV----AK----GEVLVYFNEIFDVLCKLSADSDQ--NVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRER 175 (675)
T ss_pred HHHHHHHHH----hc----cCcccchHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHhccccccccCHHHHHHHHHHH
Confidence 55666652 22 23445565543 222111 111223333333321 2 22367799999999
Q ss_pred ccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHh---cCCCCCChHHHHHHH
Q 000321 263 LLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLL---TDPSRADAPQILTAL 339 (1670)
Q Consensus 263 L~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~---~~p~~~~~~eii~~L 339 (1670)
+-.-++..|.-.+.-+--+.+.|+.+|..--|+++.-.+.=..|-+++||..+=.+..++|. +.|+.-+..++++-+
T Consensus 176 iy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vl 255 (675)
T KOG0212|consen 176 IYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVL 255 (675)
T ss_pred HhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhc
Confidence 99999999999999999999999999988889999999999999999999877776666664 456643446889999
Q ss_pred HhhhCCChhHHHHHHHHHHHHhhhhhcCCC---CHHHHHHHHHhhccCCh-hHHHHHHHH---HHHHHHHH
Q 000321 340 CDRLLDFDENVRKQVVAVICDVACHALNSI---PVETVKLVAERLRDKSV-LVKRYTMER---LADIFRGC 403 (1670)
Q Consensus 340 ~~rL~D~DEkVR~aaVkai~~la~~~l~~V---s~elL~~laeR~RDKK~-~VR~eAm~~---La~LY~~~ 403 (1670)
...+.-+++..+..|+.-|.++.......+ -..+|..+..-+-|+-. .++..|... |.++...+
T Consensus 256 v~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~ 326 (675)
T KOG0212|consen 256 VPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSE 326 (675)
T ss_pred cccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999888877766443322 12345555666667665 466554333 44444443
No 124
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=63.51 E-value=72 Score=36.07 Aligned_cols=130 Identities=17% Similarity=0.158 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHhhcC-CCCCc---------------hhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcC-------
Q 000321 270 TRLKAVGLVGDLFAV-PGSAN---------------NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD------- 326 (1670)
Q Consensus 270 ~Rl~At~llG~mfs~-~~~~~---------------~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~------- 326 (1670)
+|+.|..+|+.++.. +.-.+ ....++++...+ .|.++.||++.+.....+|...
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il---~Dp~~kvR~aA~~~l~~lL~gsk~~L~~A 78 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCIL---KDPSPKVRAAAASALAALLEGSKPFLAQA 78 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHH---cCCchhHHHHHHHHHHHHHHccHHHHHHH
Confidence 799999999999876 32111 112234444433 5999999999999988877532
Q ss_pred -----CCC---CC---hHHHHHHHHhhh-----CCChhHHHHHHHHHHHHhhh-hhcCCCCHHH----HHHHHHhhccCC
Q 000321 327 -----PSR---AD---APQILTALCDRL-----LDFDENVRKQVVAVICDVAC-HALNSIPVET----VKLVAERLRDKS 385 (1670)
Q Consensus 327 -----p~~---~~---~~eii~~L~~rL-----~D~DEkVR~aaVkai~~la~-~~l~~Vs~el----L~~laeR~RDKK 385 (1670)
+.. .. ...++..+...| ...+..+=.+.+|++..+.. ..++.++.++ +..+..+++.+.
T Consensus 79 e~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d 158 (182)
T PF13251_consen 79 EESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRD 158 (182)
T ss_pred HhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCC
Confidence 110 01 123444444443 45566777788888877765 3456677765 457788999999
Q ss_pred hhHHHHHHHHHHHHHHH
Q 000321 386 VLVKRYTMERLADIFRG 402 (1670)
Q Consensus 386 ~~VR~eAm~~La~LY~~ 402 (1670)
+.||..++..++-+...
T Consensus 159 ~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 159 PNVRVAALSCLGALLSV 175 (182)
T ss_pred CcHHHHHHHHHHHHHcC
Confidence 99999999999988764
No 125
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=63.44 E-value=4.3e+02 Score=34.08 Aligned_cols=166 Identities=11% Similarity=0.164 Sum_probs=98.6
Q ss_pred CCCChhhHHHHHHHHHhhhhheeeccCCchHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHH
Q 000321 108 GGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLS 187 (1670)
Q Consensus 108 ~~p~f~q~~~LLe~La~vks~vl~~DL~~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vIeEse~vp~~vLd~IL~ 187 (1670)
+...+.+.+.+|.++-+..+..+ .++.+..|-+..+.+.+....+.....-..++..||. ...||.+-+..++.
T Consensus 147 ~~~~l~~ll~~l~nviKfn~~~l-----~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~-y~~iP~~sl~~~i~ 220 (464)
T PF11864_consen 147 EESNLSDLLQFLVNVIKFNFNYL-----DEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIIT-YGDIPSESLSPCIE 220 (464)
T ss_pred hhhhHHHHHHHHHHHHhcCCCCC-----CHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH-cCcCChHHHHHHHH
Confidence 45567788888888777655433 2445555555555554333334444555677777776 67899999998887
Q ss_pred HhcC-----CCcHHHHHHHHHHHHHh-hhhhHHHHHHHHHHhhcCCCCCCCC---cch--HHHHHHHHHhh----Cchh-
Q 000321 188 ALGR-----NKNDTARRLAMNVIEQC-AGKLEAGIKQFLVSSMSGDSRPGHS---HID--YHEVIYDVYRC----SPQI- 251 (1670)
Q Consensus 188 ~l~~-----~~~~~a~~lA~~v~~~~-~dkL~~~I~qyf~~il~~~~~~~~~---~~~--~h~Li~eL~~~----~P~l- 251 (1670)
-|-. .-.+++++...+||... ...+=+.++.++ .+.+..... .++ .+-+=.-+|.. .|.+
T Consensus 221 vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL----~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~ 296 (464)
T PF11864_consen 221 VLCSIVNSVSLCKPSWRTMRNLLKSHLGHSAIRTLCDIL----RSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLP 296 (464)
T ss_pred HHhhHhcccccchhHHHHHHHHHcCccHHHHHHHHHHHH----cccCccccccHHHHhhHHHHHHHHHhccccCCcceec
Confidence 6621 12348899999888532 333444444444 211111111 111 12222234555 3333
Q ss_pred --hhhhhhhhcccccCCChHHHHHHHHHHHHhhc
Q 000321 252 --LSGVVPYLTGELLTDQLDTRLKAVGLVGDLFA 283 (1670)
Q Consensus 252 --L~~ViP~Le~EL~sed~~~Rl~At~llG~mfs 283 (1670)
+..|+|.|..=|+..+.-+=...+.++-++|.
T Consensus 297 ~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 297 FSPSSVLPSLLNALKSNSPRVDYEILLLINRLLD 330 (464)
T ss_pred ccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence 33499999999998888777788888888883
No 126
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=61.08 E-value=16 Score=38.55 Aligned_cols=41 Identities=22% Similarity=0.394 Sum_probs=36.2
Q ss_pred cceEEEecCCCCceEEEEEEEecCCCCeeEEEccCCcceeee
Q 000321 1373 GYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLR 1414 (1670)
Q Consensus 1373 G~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdDGd~E~l~ 1414 (1670)
|.+|=..|+.|.-||.|+|...- ..+...|.+++|+.+.+.
T Consensus 1 g~~VlAR~~~DG~YY~GtV~~~~-~~~~~lV~f~~~~~~~v~ 41 (124)
T PF15057_consen 1 GQKVLARREEDGFYYPGTVKKCV-SSGQFLVEFDDGDTQEVP 41 (124)
T ss_pred CCeEEEeeCCCCcEEeEEEEEcc-CCCEEEEEECCCCEEEeC
Confidence 77888999999999999999998 667888889899888775
No 127
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=61.00 E-value=71 Score=42.07 Aligned_cols=188 Identities=17% Similarity=0.245 Sum_probs=98.3
Q ss_pred HHHHHHhc-cCCCCCCCCChhhHHHHHHHHHhhhhheeeccCCchHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHhc
Q 000321 94 FQLIVGTF-SGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLE 172 (1670)
Q Consensus 94 F~lfi~qf-~~L~d~~~p~f~q~~~LLe~La~vks~vl~~DL~~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vIe 172 (1670)
|..++.+| ......+.+.-.+-..+| .....||-++|-.|..||..+++.-.- +.+..+.......+..++.
T Consensus 31 Y~~L~~~l~~~~~~~d~~~~~~l~~~L---~~L~~~Vs~Ld~~~~~LV~ail~~~W~----~~~~~~v~~y~~Fl~~Lvs 103 (563)
T PF05327_consen 31 YDELVEQLSDPSESKDAISVSQLIRWL---KALSSCVSLLDSSCKQLVEAILSLNWL----GRDEDFVEAYIQFLINLVS 103 (563)
T ss_dssp HHHHHHHHHS-TT-TTS--HHHHHHHH---HHHHHGGGGG-SCCHHHHHHHHT-TGG----GS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccccCcccccHHHHHHHH---HHHHHHHHHhhhHHHHHHHHHHcCCCC----CCCHHHHHHHHHHHHHHHH
Confidence 55555555 333333443434444444 444557777787788998888877331 2255677777888888887
Q ss_pred ccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCCCC--CCCCcchHHHHHHHHHhhCch
Q 000321 173 ESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSR--PGHSHIDYHEVIYDVYRCSPQ 250 (1670)
Q Consensus 173 Ese~vp~~vLd~IL~~l~~~~~~~a~~lA~~v~~~~~dkL~~~I~qyf~~il~~~~~--~~~~~~~~h~Li~eL~~~~P~ 250 (1670)
....--..+|+.|...|.+.....+-. .+... .......+|.+|..|-+++|.
T Consensus 104 a~~~yl~~vl~~LV~~f~p~~~~~~~~-------------------------~~~~~~~~~~~~~~vH~~L~~Il~lvP~ 158 (563)
T PF05327_consen 104 AQPKYLSPVLSMLVKNFIPPPSSIAEW-------------------------PGCPPEKRREIYERVHDALQKILRLVPT 158 (563)
T ss_dssp H-GGGHHHHHHHHHHGGGS-HHHHHH----------------------------------------HHHHHHHHHHH-GG
T ss_pred hhHHHHHHHHHHHHHhccCCCcccccc-------------------------chhhhhhhhhhHHHHHHHHHHHHHHcCC
Confidence 777777888888888887642211000 11100 111223689999999999999
Q ss_pred hhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHH
Q 000321 251 ILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSV 315 (1670)
Q Consensus 251 lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~ 315 (1670)
....++|.|....=.-....+...+ -+-.|+...+. ...--..+|..-+.|...++++|.+.|
T Consensus 159 s~~~L~~~l~~~FP~~~~~~~~~~~-Yv~NlL~l~~Y-~P~L~~~Il~lIi~rLi~iDVeiq~~~ 221 (563)
T PF05327_consen 159 SPSFLIPILVQNFPHKRKSKDEHVN-YVRNLLRLTEY-CPELRSDILSLIIERLIKIDVEIQIEL 221 (563)
T ss_dssp GHHHHHHHHHHTS--TTS-HHHHHH-HHHHHHHHHCC--GGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCcCCCCChHHHHH-HHHHHHHHHcc-hHHHHHHHHHHHHHHHHHHhcccccCc
Confidence 9888888877666544443333222 22222221110 122233566666666666666554444
No 128
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=60.88 E-value=5.8e+02 Score=34.76 Aligned_cols=66 Identities=17% Similarity=0.180 Sum_probs=27.7
Q ss_pred HHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 000321 335 ILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFR 401 (1670)
Q Consensus 335 ii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~Vs~elL~~laeR~RDKK~~VR~eAm~~La~LY~ 401 (1670)
.+..|.....|+=+.|+..++++|.++-+..++. -..+|..|...+-|+...|=..|--.|-.|-+
T Consensus 305 fievLe~lS~D~L~~vk~raL~ti~~lL~~kPEq-E~~LL~~lVNKlGDpqnKiaskAsylL~~L~~ 370 (988)
T KOG2038|consen 305 FIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQ-ENNLLVLLVNKLGDPQNKIASKASYLLEGLLA 370 (988)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHH-HHHHHHHHHHhcCCcchhhhhhHHHHHHHHHh
Confidence 3444444444444455555444444433332210 01134444444444444444444444444443
No 129
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins []. Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....
Probab=59.73 E-value=19 Score=36.02 Aligned_cols=48 Identities=17% Similarity=0.139 Sum_probs=38.8
Q ss_pred CCccccceEEEecCCCCceEEEEEEEecCCCCeeEEEc-cCCcceeeecC
Q 000321 1368 IEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILY-DDEDVEVLRLD 1416 (1670)
Q Consensus 1368 ~~~lvG~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~Y-dDGd~E~l~L~ 1416 (1670)
....+|..+-+.=+.|+.||.|.| ..+...+.-.|.| |-|..+.+...
T Consensus 50 ~~~~~~~~~~~~~~~~~~w~Ra~I-~~~~~~~~~~V~~iD~G~~~~v~~~ 98 (121)
T PF00567_consen 50 PESNPGEGCLCVVSEDGRWYRAVI-TVDIDENQYKVFLIDYGNTEKVSAS 98 (121)
T ss_dssp ST--TTEEEEEEETTTSEEEEEEE-EEEECTTEEEEEETTTTEEEEEEGG
T ss_pred cccccCCEEEEEEecCCceeeEEE-EEecccceeEEEEEecCceEEEcHH
Confidence 345588888888899999999999 7777788889988 99999997654
No 130
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.53 E-value=6.1e+02 Score=34.57 Aligned_cols=157 Identities=16% Similarity=0.214 Sum_probs=103.7
Q ss_pred hhCc-hhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCc-hhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHH
Q 000321 246 RCSP-QILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSAN-NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCL 323 (1670)
Q Consensus 246 ~~~P-~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~-~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL 323 (1670)
+++- +++-.|+|++|+.++++|=..|-.|+-.+|-++-+|..+- ..-=+..-..-+.-..|.+.-||-.---..+.|.
T Consensus 355 ~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~ 434 (859)
T KOG1241|consen 355 QCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIA 434 (859)
T ss_pred HHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHH
Confidence 4443 3455799999999999999999999999999998885331 1111333444455556888888855555555555
Q ss_pred hcCCCC----CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCH------------HHHH---HHHHhhccC
Q 000321 324 LTDPSR----ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV------------ETVK---LVAERLRDK 384 (1670)
Q Consensus 324 ~~~p~~----~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~Vs~------------elL~---~laeR~RDK 384 (1670)
-..|+. ...+.++.+|..=|+| ..+|=..+|-++..++.......+. .++. .+++|.-=-
T Consensus 435 d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgn 513 (859)
T KOG1241|consen 435 DFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGN 513 (859)
T ss_pred hhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccc
Confidence 554431 1123556677777776 5788888999988887433222211 1222 344555434
Q ss_pred ChhHHHHHHHHHHHHHHHH
Q 000321 385 SVLVKRYTMERLADIFRGC 403 (1670)
Q Consensus 385 K~~VR~eAm~~La~LY~~~ 403 (1670)
-.+.|..|-++|+.+-+..
T Consensus 514 qsNLR~AAYeALmElIk~s 532 (859)
T KOG1241|consen 514 QSNLRSAAYEALMELIKNS 532 (859)
T ss_pred hhhHHHHHHHHHHHHHHcC
Confidence 5789999999999998853
No 131
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=58.18 E-value=7.5e+02 Score=35.51 Aligned_cols=132 Identities=16% Similarity=0.123 Sum_probs=88.3
Q ss_pred ChHHHHHHHHHHHHh---hcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhh
Q 000321 267 QLDTRLKAVGLVGDL---FAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRL 343 (1670)
Q Consensus 267 d~~~Rl~At~llG~m---fs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~eii~~L~~rL 343 (1670)
+.-+|..-++-++.+ |+..+++ .-+..-.+.=.||++...|.++.+.+..+-.-=.-+...+=|+..|..-|
T Consensus 591 ~~~Vkr~Lle~i~~LC~FFGk~ksN-----D~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~l 665 (1431)
T KOG1240|consen 591 PPIVKRALLESIIPLCVFFGKEKSN-----DVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGL 665 (1431)
T ss_pred chHHHHHHHHHHHHHHHHhhhcccc-----cchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhc
Confidence 347777666666665 4443322 22333333346899999999999998753221111212234669999999
Q ss_pred CCChhHHHHHHHHHHHHhhhhh-cCCC-CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHH
Q 000321 344 LDFDENVRKQVVAVICDVACHA-LNSI-PVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 403 (1670)
Q Consensus 344 ~D~DEkVR~aaVkai~~la~~~-l~~V-s~elL~~laeR~RDKK~~VR~eAm~~La~LY~~~ 403 (1670)
.|++|-|=..|..++.-+.... +..- =.++++.++--+.--+.=||+.++.-++.+|+..
T Consensus 666 tD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 666 TDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred cCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence 9999999888777776655533 2221 2357788888888888889999999999888864
No 132
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=58.15 E-value=3.6e+02 Score=31.48 Aligned_cols=129 Identities=17% Similarity=0.055 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhhCCcCccccHHHHHHHHhh------ccccchHHHHHHHHHhhcchhhhhhcccchHHHHHHHHh-hc
Q 000321 617 MQSCMDILGILARFSPLLLGGTEEELVNLLKE------ENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLC-LE 689 (1670)
Q Consensus 617 ~~~a~eLL~~IS~~~P~lFk~~v~~Li~lL~~------~~~~~~~~aLkiLak~~k~~~e~~~~~~s~l~~~L~~la-l~ 689 (1670)
...++++|..+-...|..| +..+.++..+.- .+.......+-.++..-..+....+.....+...+..++ ..
T Consensus 55 ~~~~~rLl~~lw~~~~r~f-~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~~~ 133 (234)
T PF12530_consen 55 RYVALRLLTLLWKANDRHF-PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGVDLLPLLSGCLNQS 133 (234)
T ss_pred HHHHHHHHHHHHHhCchHH-HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcc
Confidence 3467899999999999999 444544444111 111111122222222222233333333446777777777 56
Q ss_pred CChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhhcCCCchHHHHHHHHHhhcccc
Q 000321 690 GSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPV 748 (1670)
Q Consensus 690 Gtp~qAKyAvr~Laa~~~~~~~~~~~~L~~~L~~~L~~~~~l~t~L~sL~~Iaq~aP~v 748 (1670)
..+..+-+|+.+|..+...+ ...+....+-|...| ..+.-|.++.+|..++.+.|..
T Consensus 134 ~~~~~~alale~l~~Lc~~~-vvd~~s~w~vl~~~l-~~~~rp~v~~~l~~l~~l~~~~ 190 (234)
T PF12530_consen 134 CDEVAQALALEALAPLCEAE-VVDFYSAWKVLQKKL-SLDYRPLVLKSLCSLFALVPQG 190 (234)
T ss_pred ccHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHhc-CCccchHHHHHHHHHHHHhccc
Confidence 67788889999999888643 333333455566655 2246788899999999987743
No 133
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=57.89 E-value=4.9e+02 Score=32.92 Aligned_cols=250 Identities=15% Similarity=0.184 Sum_probs=124.0
Q ss_pred CChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcC-CCC--CChHHHH------
Q 000321 266 DQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD-PSR--ADAPQIL------ 336 (1670)
Q Consensus 266 ed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~-p~~--~~~~eii------ 336 (1670)
.......+|.+++++.|.. |..--.+.+.+.|.-+.|-++.||.+.++-.+.+-.-. .++ +...+++
T Consensus 36 ~~~k~k~lasq~ip~~fk~----fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLnk~sl~ 111 (460)
T KOG2213|consen 36 GTSKEKRLASQFIPRFFKH----FPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLNKASLT 111 (460)
T ss_pred cchHHHHHHHHHHHHHHhh----CchhhhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhHHHHHHHHHHHHHH
Confidence 3456677899999999975 33333468999999999999999999998777533210 000 0001111
Q ss_pred HHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHH-----HHHHhhccCC--hhHHHHHHHHHHHHHHHHhh-h--
Q 000321 337 TALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVK-----LVAERLRDKS--VLVKRYTMERLADIFRGCCL-R-- 406 (1670)
Q Consensus 337 ~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~Vs~elL~-----~laeR~RDKK--~~VR~eAm~~La~LY~~~~~-~-- 406 (1670)
..+..-.. .|+.+|..+.+-|.+= +-.++.++|. .+.+-+ || ..|=.+-...++++-...-. .
T Consensus 112 ~Lf~~~~~-~D~~irek~l~fi~tK----l~~l~~e~L~kevE~~iv~ei--kkal~dVtgeef~lfm~~L~~lk~~~~k 184 (460)
T KOG2213|consen 112 GLFGQIEV-GDEQIREKVLKFIRTK----LITLKGEVLTKEVERHIVDEI--KKALEDVTGEEFTLFMDILASLKSLQTK 184 (460)
T ss_pred HHHhhhhh-hhHHHHHHHHHHHHHH----hhcccHHHhhhHHHHHHHHHH--HHHHHhccHHHHHHHHHHHHhhhcccCC
Confidence 12222234 5999999888777432 2223333332 000000 00 11222222333332221100 0
Q ss_pred -----------ccCCCcchhcccc----chHHHhhhh------ccCCCC-chhHHHHhhccCcCCCCC--HHHHHHHHHH
Q 000321 407 -----------NFNGSINQNEFEW----IPGKILRCL------YDKDFG-SDTIESVLCGSLFPTGFS--VKDRVRHWVR 462 (1670)
Q Consensus 407 -----------~~~~~~~~~~~~w----IPs~IL~~~------Y~nD~~-~~lVE~vL~e~LlP~~~~--~~~R~~~ll~ 462 (1670)
..++.+..+.|.- --.++++|. |..... ...|+.+ ++.++|..++ +++|--.++.
T Consensus 185 ~~~a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~-n~~~ip~~fdkl~e~rkL~lLK 263 (460)
T KOG2213|consen 185 AGEARLQELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYL-NKHIIPHHFDKLTEERKLDLLK 263 (460)
T ss_pred CCHHHHHHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHH-HhhhcccccccchHHHHHHHHH
Confidence 0001111111110 013344442 222211 2344443 7778887554 5677777776
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--CCcHHH----HHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q 000321 463 IFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQD--GDAPEI----QKKILFCFRVMSRSFAEPAKAEENFLILD 536 (1670)
Q Consensus 463 l~~~LD~~~~kal~~il~~k~~l~~~~~~~l~l~~~~~~--~d~~ei----~~kl~~~I~~Ls~~FPDp~Ka~~~L~kf~ 536 (1670)
.+..+.... .. +..++-+...+++..++.. ...+++ ...+....+++....||.+++..+-+++-
T Consensus 264 ~lAEMss~t-----ta----q~a~q~Lpsi~elLk~yMpa~kt~ee~~fsyvEClly~~h~Lg~k~pn~t~ak~d~K~L~ 334 (460)
T KOG2213|consen 264 ALAEMSSYT-----TA----QAARQMLPSIVELLKEYMPAPKTGEEMQFSYVECLLYALHHLGHKKPNFTNAKCDAKKLK 334 (460)
T ss_pred HHHHhCccc-----hH----HHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHHHHhhcCcchhhhhcchhhhc
Confidence 665554432 11 1122223333444333321 122332 34566778888888999999988877765
No 134
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=57.80 E-value=32 Score=46.48 Aligned_cols=135 Identities=17% Similarity=0.234 Sum_probs=101.1
Q ss_pred CChHHHHHHHHHHHHhhcCCCCC-chhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhC
Q 000321 266 DQLDTRLKAVGLVGDLFAVPGSA-NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLL 344 (1670)
Q Consensus 266 ed~~~Rl~At~llG~mfs~~~~~-~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~eii~~L~~rL~ 344 (1670)
|--+-|..|..++|.++..-..+ +-...++.+..+ ..|..|.||.++.+.++.+-..-+.....+.+...+...+.
T Consensus 210 d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~l---c~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~ 286 (759)
T KOG0211|consen 210 DWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSL---CQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLR 286 (759)
T ss_pred hhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhh---ccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhh
Confidence 44447888888888888653312 334445555544 67999999999999888765544444455678889999999
Q ss_pred CChhHHHHHHHHHHHHhhh-hhcC-CCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHH
Q 000321 345 DFDENVRKQVVAVICDVAC-HALN-SIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 403 (1670)
Q Consensus 345 D~DEkVR~aaVkai~~la~-~~l~-~Vs~elL~~laeR~RDKK~~VR~eAm~~La~LY~~~ 403 (1670)
|-.+-||.+|+.....+.. ..-. .+-..+..++..-.-|+.+.||--.+.....+|...
T Consensus 287 DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~ 347 (759)
T KOG0211|consen 287 DDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAV 347 (759)
T ss_pred cchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHh
Confidence 9999999999999877654 2222 344456778888899999999999999999999975
No 135
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=57.48 E-value=25 Score=31.83 Aligned_cols=43 Identities=19% Similarity=0.252 Sum_probs=33.6
Q ss_pred ccceEEEecCCCCceEEEEEEEecCCCC--eeEEEccCCc---ceeeec
Q 000321 1372 IGYRIKVWWPMDKQFYEGTIKSYDPIKK--KHVILYDDED---VEVLRL 1415 (1670)
Q Consensus 1372 vG~rv~V~Wp~D~~~Y~G~V~~y~~~~~--~H~v~YdDGd---~E~l~L 1415 (1670)
||.+|.+.| .+..||.++|..-....+ ...|.|..=+ .||+..
T Consensus 3 vG~~v~~~~-~~~~~y~A~I~~~r~~~~~~~YyVHY~g~nkR~DeWV~~ 50 (55)
T PF11717_consen 3 VGEKVLCKY-KDGQWYEAKILDIREKNGEPEYYVHYQGWNKRLDEWVPE 50 (55)
T ss_dssp TTEEEEEEE-TTTEEEEEEEEEEEECTTCEEEEEEETTSTGCC-EEEET
T ss_pred cCCEEEEEE-CCCcEEEEEEEEEEecCCCEEEEEEcCCCCCCceeeecH
Confidence 899999999 899999999999988664 5778887544 445543
No 136
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=56.25 E-value=6.1e+02 Score=33.58 Aligned_cols=214 Identities=21% Similarity=0.218 Sum_probs=121.1
Q ss_pred HHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhheeeccCC-chHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHh
Q 000321 93 IFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLE-CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLL 171 (1670)
Q Consensus 93 IF~lfi~qf~~L~d~~~p~f~q~~~LLe~La~vks~vl~~DL~-~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vI 171 (1670)
+.++.-..|+-=.++..| .+-...|.++-++ .|.|.| ..+++...|..++..+ +..-++|..-.+.||..+.
T Consensus 47 flr~vn~IL~~Kk~~si~--dRil~fl~~f~~Y----~~~~dpeg~~~V~~~~~h~lRg~-eskdk~VR~r~lqila~~~ 119 (885)
T COG5218 47 FLRVVNTILACKKNPSIP--DRILSFLKRFFEY----DMPDDPEGEELVAGTFYHLLRGT-ESKDKKVRKRSLQILALLS 119 (885)
T ss_pred HHHHHHHhhccccCCCcH--HHHHHHHHHHHHh----cCCCChhhhHHHHHHHHHHHhcc-cCcchhHHHHHHHHHHHHH
Confidence 333333344332334444 3445555555443 467777 6899999888877643 3445678888889998888
Q ss_pred cccccccHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhC
Q 000321 172 EESEDIQEDLLVILLSALGR---NKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCS 248 (1670)
Q Consensus 172 eEse~vp~~vLd~IL~~l~~---~~~~~a~~lA~~v~~~~~dkL~~~I~qyf~~il~~~~~~~~~~~~~h~Li~eL~~~~ 248 (1670)
+--..|...+-..++..+.. .+..+.+.=|..+ --||.++ .+ +...+.-.++..+-+..
T Consensus 120 d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~------------L~~~Qe~-~~-----neen~~~n~l~~~vqnD 181 (885)
T COG5218 120 DVVREIDEVLANGLLEKLSERLFDREKAVRREAVKV------------LCYYQEM-EL-----NEENRIVNLLKDIVQND 181 (885)
T ss_pred HhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH------------HHHHHhc-cC-----ChHHHHHHHHHHHHhcC
Confidence 77777777777766655521 1111112112111 1233332 11 12333444666665655
Q ss_pred chhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCC
Q 000321 249 PQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPS 328 (1670)
Q Consensus 249 P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~ 328 (1670)
|+ .++|..|.- +++.. ++|+-.-|.|..|.+...|..+-+.+-.-+---.+
T Consensus 182 PS-----------------~EVRr~all----ni~vd--------nsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~ 232 (885)
T COG5218 182 PS-----------------DEVRRLALL----NISVD--------NSTYPCILERARDVSGANRRMVYERCLPRIGDLKS 232 (885)
T ss_pred cH-----------------HHHHHHHHH----HeeeC--------CCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhh
Confidence 53 567777642 22221 24677889999999999998876654321110001
Q ss_pred CCChHHHHHHHHhhhCCChhHHHHHHHHHHHHh
Q 000321 329 RADAPQILTALCDRLLDFDENVRKQVVAVICDV 361 (1670)
Q Consensus 329 ~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~l 361 (1670)
.+....|. .+.--|.|-|.-||.|++.+|...
T Consensus 233 lsi~kri~-l~ewgl~dRe~sv~~a~~d~ia~~ 264 (885)
T COG5218 233 LSIDKRIL-LMEWGLLDREFSVKGALVDAIASA 264 (885)
T ss_pred ccccceeh-hhhhcchhhhhhHHHHHHHHHHHH
Confidence 11111222 455568999999999999998543
No 137
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=56.01 E-value=1.2e+02 Score=39.72 Aligned_cols=82 Identities=13% Similarity=0.167 Sum_probs=53.0
Q ss_pred CChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCC
Q 000321 266 DQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLD 345 (1670)
Q Consensus 266 ed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~eii~~L~~rL~D 345 (1670)
-+.....+|-+.+.+.|.. |..---..+++.|.=+-|-++.||+..++..+.+-..+|. ..+-|.+.|...|.
T Consensus 34 g~~k~K~Laaq~I~kffk~----FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~--~v~kvaDvL~QlL~- 106 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKH----FPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE--HVSKVADVLVQLLQ- 106 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-----GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T---HHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHHHhh----ChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH--HHhHHHHHHHHHHh-
Confidence 3566778888888888864 5555567888888888888888888888888887776664 35677777777666
Q ss_pred ChhHHHHHH
Q 000321 346 FDENVRKQV 354 (1670)
Q Consensus 346 ~DEkVR~aa 354 (1670)
+|+.+=+.+
T Consensus 107 tdd~~E~~~ 115 (556)
T PF05918_consen 107 TDDPVELDA 115 (556)
T ss_dssp ---HHHHHH
T ss_pred cccHHHHHH
Confidence 555444443
No 138
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=55.81 E-value=1.1e+02 Score=38.96 Aligned_cols=178 Identities=14% Similarity=0.237 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHhhcCCC-CCCChh---HHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhheeeccCCch---H
Q 000321 66 LLVATCICEITRITAPE-APYSDD---VLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECD---E 138 (1670)
Q Consensus 66 a~vAcCLadIlRI~APd-aPytd~---~LkdIF~lfi~qf~~L~d~~~p~f~q~~~LLe~La~vks~vl~~DL~~~---~ 138 (1670)
-|+.-|++=|+=++.-+ .||.+. +|..|+..+. .+|+||.|. +|+.|+++..=- .+|+-+.+ .
T Consensus 44 eylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~------kNPsnP~Fn--HylFEsi~~lir--~~~~~~~~~v~~ 113 (435)
T PF03378_consen 44 EYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVS------KNPSNPRFN--HYLFESIGALIR--FVCEADPEAVSQ 113 (435)
T ss_dssp HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHH------TS---HHHH--HHHHHHHHHHHH--HS-GGGHH---H
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH------hCCCCcchh--hhHHHHHHHHHH--hccCCChhHHHH
Confidence 47888877776665544 677553 2333333332 357888775 678899986421 23432222 4
Q ss_pred HHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHhcccc--cccHH---HHHHHHHHhcCCCc---HHHHHHHHHHHHHhhh
Q 000321 139 LVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESE--DIQED---LLVILLSALGRNKN---DTARRLAMNVIEQCAG 210 (1670)
Q Consensus 139 Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vIeEse--~vp~~---vLd~IL~~l~~~~~---~~a~~lA~~v~~~~~d 210 (1670)
+-..||-.|..+...+ -.....+...||+.+++-.. .+|+. ++..||+...-... .+.-+|-...|.+.+.
T Consensus 114 ~E~~L~P~f~~ILq~d-V~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~ 192 (435)
T PF03378_consen 114 FEEALFPPFQEILQQD-VQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPS 192 (435)
T ss_dssp HHHHHHHHHHHHHHTT--TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCch
Confidence 5555555555554332 22455566778888888766 56653 33344432211111 1445677778888776
Q ss_pred hhH--H---HHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhCch-hhhhhhhh
Q 000321 211 KLE--A---GIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQ-ILSGVVPY 258 (1670)
Q Consensus 211 kL~--~---~I~qyf~~il~~~~~~~~~~~~~h~Li~eL~~~~P~-lL~~ViP~ 258 (1670)
.+. . .|-.-|.-++.++. .+...++|+..|...+|. .|...+|+
T Consensus 193 ~i~~~~~l~~iLgvFQkLi~sk~----~D~~gF~LL~~iv~~~p~~~l~~yl~~ 242 (435)
T PF03378_consen 193 FIVANNQLEPILGVFQKLIASKA----NDHYGFDLLESIVENLPPEALEPYLKQ 242 (435)
T ss_dssp G----S-CHHHHHHHHHHHT-TT----CHHHHHHHHHHHHHHS-HHHHGGGHHH
T ss_pred hhcchhhHHHHHHHHHHHHCCCC----cchHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 552 1 22223445555431 223356788888877776 45555544
No 139
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=55.18 E-value=88 Score=34.53 Aligned_cols=139 Identities=14% Similarity=0.169 Sum_probs=87.3
Q ss_pred ChhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhC-CcCccccH----HHHHHHHhhccc-cchHHHHHHHHHhhcc
Q 000321 594 NKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFS-PLLLGGTE----EELVNLLKEENE-IIKEGILHVLAKAGGT 667 (1670)
Q Consensus 594 Nks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~-P~lFk~~v----~~Li~lL~~~~~-~~~~~aLkiLak~~k~ 667 (1670)
+++.+..+..++..--.+.+....-.+..|+..+...+ |++|..|. ..|+.+|+..++ .+.+.++.+|+.+-..
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 67777777777654333332222345678999999998 99996663 666777776443 3556677777665432
Q ss_pred hhhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhhcCCCchHHHHHHHHHhhccc
Q 000321 668 IREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMP 747 (1670)
Q Consensus 668 ~~e~~~~~~s~l~~~L~~lal~Gtp~qAKyAvr~Laa~~~~~~~~~~~~L~~~L~~~L~~~~~l~t~L~sL~~Iaq~aP~ 747 (1670)
++.. +. + -+++ +||...++...+|..+.+ ..-....|.+|+.+-+..|.
T Consensus 99 ~~~~-p~----l---~Rei---~tp~l~~~i~~ll~l~~~--------------------~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 99 IRGK-PT----L---TREI---ATPNLPKFIQSLLQLLQD--------------------SSCPETALDALATLLPHHPT 147 (165)
T ss_pred hcCC-Cc----h---HHHH---hhccHHHHHHHHHHHHhc--------------------cccHHHHHHHHHHHHHHCCc
Confidence 2222 11 1 1111 456666666555553322 01224578889999999999
Q ss_pred ccccchHHHHHHHHHh
Q 000321 748 VFETRESEIEEFIKSK 763 (1670)
Q Consensus 748 vfe~~~~eI~~fiik~ 763 (1670)
.|-.+...|..+++.-
T Consensus 148 t~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 148 TFRPFANKIESALLSL 163 (165)
T ss_pred cccchHHHHHHHHHHH
Confidence 9999999998888743
No 140
>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification]
Probab=55.17 E-value=18 Score=41.75 Aligned_cols=36 Identities=19% Similarity=0.404 Sum_probs=30.5
Q ss_pred ccccceEEEecCCCCceEEEEEEEecCCCCeeEEEc
Q 000321 1370 DLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILY 1405 (1670)
Q Consensus 1370 ~lvG~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~Y 1405 (1670)
.=||.+|.+-|++|..||.++|....+.++.-.|-+
T Consensus 91 w~vg~K~~A~~~ddg~~y~AtIe~ita~~~~~ai~f 126 (262)
T KOG3026|consen 91 WKVGDKVQAVFSDDGQIYDATIEHITAMEGTVAIIF 126 (262)
T ss_pred cccCCEEEEeecCCCceEEeehhhccCCCCceeEEE
Confidence 449999999999999999999999999766555544
No 141
>KOG2393 consensus Transcription initiation factor IIF, large subunit (RAP74) [Transcription]
Probab=53.15 E-value=30 Score=44.26 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=13.1
Q ss_pred cccccCCCCCcccccCCCCCCCCC
Q 000321 1565 EVDKMDSEEKPAEEVGSVPQDEKS 1588 (1670)
Q Consensus 1565 ~~~~~~~~~~~~~~~~~~~~~~~~ 1588 (1670)
+++..+|++. +.|-|-.||-.+.
T Consensus 293 e~~E~DYdee-~addEE~Peik~d 315 (555)
T KOG2393|consen 293 EGRELDYDEE-SADDEEAPEIKGD 315 (555)
T ss_pred cccccccccc-cCCcccccccccc
Confidence 4445566776 5555555665553
No 142
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=52.68 E-value=54 Score=36.88 Aligned_cols=70 Identities=14% Similarity=0.180 Sum_probs=57.9
Q ss_pred HHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHH
Q 000321 333 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 403 (1670)
Q Consensus 333 ~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~Vs~elL~~laeR~RDKK~~VR~eAm~~La~LY~~~ 403 (1670)
+.-++.+.+...+++..||.+|+..+.-+....+-+ |.+.+-++.-..-|....||..|+..+..+...|
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvn-P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLVN-PKQCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCC-hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 345667777899999999999999997766544432 6777888888899999999999999999999987
No 143
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=52.43 E-value=1.1e+03 Score=35.59 Aligned_cols=159 Identities=12% Similarity=0.162 Sum_probs=76.5
Q ss_pred HHhHHHHHHHhcc--hhhhcC----CCcchHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhh
Q 000321 41 LEAMQPFLNAIVQ--PVLLKH----QDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGR 114 (1670)
Q Consensus 41 ~~sl~~~~~~Lv~--~~LL~H----kD~~Vra~vAcCLadIlRI~APdaPytd~~LkdIF~lfi~qf~~L~d~~~p~f~q 114 (1670)
.+++..+..+|.. ..=|.. .---++.+|-.|...+-||-- +-..|+..+-.-|-..+-..+. .-
T Consensus 1084 ~eai~~fv~AL~~vS~eEl~~~~~pr~FsLqKLveIa~~Nm~Rirl--------~W~~iW~~l~~hf~~vg~~~n~--~v 1153 (1780)
T PLN03076 1084 SEAIIDFVKALCKVSMEELRSPSDPRVFSLTKIVEIAHYNMNRIRL--------VWSSIWHVLSDFFVTIGCSENL--SI 1153 (1780)
T ss_pred HHHHHHHHHHHHHhhHHHHccCCCCchhHHHHHHHHHHhcccchhe--------ehHhHHHHHHHHHHHhcCCcch--hH
Confidence 3556666665532 222222 222345556666666656533 2234555555555444322222 24
Q ss_pred HHHHHHHHHhhhh-heeeccCCchHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHhccc-ccccHHHHHHHHHHhc--
Q 000321 115 RVVILETLAKYRS-CVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEES-EDIQEDLLVILLSALG-- 190 (1670)
Q Consensus 115 ~~~LLe~La~vks-~vl~~DL~~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vIeEs-e~vp~~vLd~IL~~l~-- 190 (1670)
.+|.|.+|-.+-. |.-.-+|+.-.+-.++.+-|-.+........|...+...+.++|... +.|-. =++.||.-|.
T Consensus 1154 a~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkS-GWktIF~VLs~a 1232 (1780)
T PLN03076 1154 AIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKS-GWKSMFMVFTTA 1232 (1780)
T ss_pred HHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhc-CcHHHHHHHHHH
Confidence 6777776654321 22223333212222333333333333334467777777777776663 33433 3666666553
Q ss_pred -CCCc----HHHHHHHHHHHHHhhh
Q 000321 191 -RNKN----DTARRLAMNVIEQCAG 210 (1670)
Q Consensus 191 -~~~~----~~a~~lA~~v~~~~~d 210 (1670)
..+. ..||+....|+.....
T Consensus 1233 a~d~~e~iV~lAFetl~~I~~d~f~ 1257 (1780)
T PLN03076 1233 AYDDHKNIVLLAFEIIEKIIREYFP 1257 (1780)
T ss_pred HhCccHHHHHHHHHHHHHHHHhhhh
Confidence 1111 1678887777766554
No 144
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=52.02 E-value=3.2e+02 Score=37.45 Aligned_cols=139 Identities=21% Similarity=0.229 Sum_probs=102.8
Q ss_pred hhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhc-CCCCCC
Q 000321 253 SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT-DPSRAD 331 (1670)
Q Consensus 253 ~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~-~p~~~~ 331 (1670)
..|+|.+.+-+.-+...+|..|+..++.++..-..+. ..+......++.-..|.+..||-...+..-.+... -|+. .
T Consensus 275 s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~-d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~-~ 352 (759)
T KOG0211|consen 275 SEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD-DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSA-T 352 (759)
T ss_pred hhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcccc-C
Confidence 3467777776777789999999999998887644332 77788889999999999999998877766553322 1222 1
Q ss_pred hHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh----cCCCCH-HHHHHHHHhhccCChhHHHHHH
Q 000321 332 APQILTALCDRLLDFDENVRKQVVAVICDVACHA----LNSIPV-ETVKLVAERLRDKSVLVKRYTM 393 (1670)
Q Consensus 332 ~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~----l~~Vs~-elL~~laeR~RDKK~~VR~eAm 393 (1670)
..+....+..-+.|..+.||.++-.-+..+++.- .-.++. .+|-.+-.-+-|....||....
T Consensus 353 ~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a 419 (759)
T KOG0211|consen 353 RTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALA 419 (759)
T ss_pred cccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHh
Confidence 2367788889999999999999888888777622 133333 3567788888999999887643
No 145
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=51.04 E-value=1.1e+02 Score=37.39 Aligned_cols=164 Identities=20% Similarity=0.303 Sum_probs=88.0
Q ss_pred HHHHHHHHHhhhhheeeccCCchHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHhcccc---------cccHHHHHHH
Q 000321 115 RVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESE---------DIQEDLLVIL 185 (1670)
Q Consensus 115 ~~~LLe~La~vks~vl~~DL~~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vIeEse---------~vp~~vLd~I 185 (1670)
++.+||+|-..+--+.+. -.++..|=..+ +.++ ..|...-+.-..-+++.++ .|..+++..|
T Consensus 63 cVscLERLfkakegahla----pnlmpdLQrGL---iadd--asVKiLackqigcilEdcDtnaVseillvvNaeilkli 133 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLA----PNLMPDLQRGL---IADD--ASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLI 133 (524)
T ss_pred HHHHHHHHHhhccchhhc----hhhhHHHHhcc---cCCc--chhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHH
Confidence 889999997766544221 11222221111 1111 1233333344444555555 2455667777
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCCCCC------CC--CcchHHHHHHHHHhhCchhhh----
Q 000321 186 LSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRP------GH--SHIDYHEVIYDVYRCSPQILS---- 253 (1670)
Q Consensus 186 L~~l~~~~~~~a~~lA~~v~~~~~dkL~~~I~qyf~~il~~~~~~------~~--~~~~~h~Li~eL~~~~P~lL~---- 253 (1670)
+..++...- ...+-|..-|.+ ....+..+...|-+-+..+-.. .+ ...+.++||.+|+.++|..+.
T Consensus 134 ldcIggedd-eVAkAAiesikr-ialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckk 211 (524)
T KOG4413|consen 134 LDCIGGEDD-EVAKAAIESIKR-IALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKK 211 (524)
T ss_pred HHHHcCCcH-HHHHHHHHHHHH-HHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhh
Confidence 777754322 111222221211 1223333333443333222111 11 123679999999999999985
Q ss_pred -hhhhhhcccccC-CChHHHHHHHHHHHHhhc-CCCCCc
Q 000321 254 -GVVPYLTGELLT-DQLDTRLKAVGLVGDLFA-VPGSAN 289 (1670)
Q Consensus 254 -~ViP~Le~EL~s-ed~~~Rl~At~llG~mfs-~~~~~~ 289 (1670)
+.+-+|+.||.. +|+-+|....+++..+.- .+|..|
T Consensus 212 SGLldlLeaElkGteDtLVianciElvteLaeteHgref 250 (524)
T KOG4413|consen 212 SGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREF 250 (524)
T ss_pred hhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhh
Confidence 468899999996 899999999998877653 344433
No 146
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=50.63 E-value=8.3e+02 Score=33.44 Aligned_cols=166 Identities=20% Similarity=0.203 Sum_probs=81.7
Q ss_pred hhccHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHHhcCCCc---hHHHHHHHHHhhhc------cccChhHHHHHHHHHH
Q 000321 537 QLKDANVWKILMNLLDSNTSFDQA-FTGRDDLLKILGAKHR---LYDFLSTLSMKCSY------LLFNKEHVKEILLEVA 606 (1670)
Q Consensus 537 kLnD~RiykLLk~~id~~td~~t~-~~a~~ELlkkL~~~~~---l~e~l~~Ll~R~S~------li~Nks~V~~LL~~v~ 606 (1670)
+.+|+=++++|+++...+...+.. ......|++.+..... ..+++-+|-.-..+ ++-+-.-||.|.+.+.
T Consensus 464 ~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~ 543 (708)
T PF05804_consen 464 KTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLK 543 (708)
T ss_pred hcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhC
Confidence 457888999999998876444333 3445566666655322 34445544332211 2323455666666553
Q ss_pred hhcccchhhhHHHHHHHHHHHHh--hCCcCcc--ccHHHHHHHHhhccccchHHHHHHHHHhhcchhhh-----hhcccc
Q 000321 607 AQKSSANAQFMQSCMDILGILAR--FSPLLLG--GTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQ-----LAATSS 677 (1670)
Q Consensus 607 ~~~~~~~~~~~~~a~eLL~~IS~--~~P~lFk--~~v~~Li~lL~~~~~~~~~~aLkiLak~~k~~~e~-----~~~~~s 677 (1670)
.. ...++ ..-.+.-++-.++. .+..++. +.+..|+++|....+ --+-+||+++-+...+... +.. ..
T Consensus 544 ~g-~~~dD-l~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqe-DdE~VlQil~~f~~ll~h~~tr~~ll~-~~ 619 (708)
T PF05804_consen 544 PG-ASEDD-LLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQE-DDEIVLQILYVFYQLLFHEETREVLLK-ET 619 (708)
T ss_pred CC-CCChH-HHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCc-hHHHHHHHHHHHHHHHcChHHHHHHHh-cc
Confidence 22 11111 11112222222221 1122222 447899999987433 2356888888776543321 110 11
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHhhc
Q 000321 678 SVDLLLERLCLEGSRRQAKYAVHALAAIT 706 (1670)
Q Consensus 678 ~l~~~L~~lal~Gtp~qAKyAvr~Laa~~ 706 (1670)
....-|-++.-..++..+|.|=.||-.+.
T Consensus 620 ~~~~ylidL~~d~N~~ir~~~d~~Ldii~ 648 (708)
T PF05804_consen 620 EIPAYLIDLMHDKNAEIRKVCDNALDIIA 648 (708)
T ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 23333433433344555566655555444
No 147
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.65 E-value=1e+02 Score=37.43 Aligned_cols=162 Identities=13% Similarity=0.115 Sum_probs=115.8
Q ss_pred hHHHHHHHHHhhCchhhhh----hhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhH
Q 000321 236 DYHEVIYDVYRCSPQILSG----VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAV 311 (1670)
Q Consensus 236 ~~h~Li~eL~~~~P~lL~~----ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~V 311 (1670)
+.-..|..|-.+.|+.|.+ ||.++-.+|..-.-.+=..|+.++++||+.-+.-+.+.-..+-...|.|..+-..=|
T Consensus 107 dgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFv 186 (334)
T KOG2933|consen 107 DGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFV 186 (334)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHH
Confidence 4556677777777776554 889999999999999999999999999998765666777888889999988877888
Q ss_pred HHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcC------CCCHHHHHHHHHhhccCC
Q 000321 312 RMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN------SIPVETVKLVAERLRDKS 385 (1670)
Q Consensus 312 R~~~v~~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~------~Vs~elL~~laeR~RDKK 385 (1670)
|...-++.-.. .+|-. ..-++..|...+.-+-.+||..++..+.... ..+. ....++...+++-++||=
T Consensus 187 reda~kAL~aM-V~~vt---p~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v-~rl~v~~~~~~~~~dl~~a~~~~~~d~L 261 (334)
T KOG2933|consen 187 REDAEKALVAM-VNHVT---PQKLLRKLIPILQHSNPRVRAKAALCFSRCV-IRLGVLPVLLQGSCDLSRAAQEQGSDKL 261 (334)
T ss_pred HHHHHHHHHHH-HhccC---hHHHHHHHHHHHhhhchhhhhhhhccccccc-eeccccchhhHhHHHHHHHHHhhhcccc
Confidence 88777766543 33322 2357788888899999999998544432110 1111 113355678999999999
Q ss_pred hhHHHHHHHHHHHHHHH
Q 000321 386 VLVKRYTMERLADIFRG 402 (1670)
Q Consensus 386 ~~VR~eAm~~La~LY~~ 402 (1670)
+.+|..|=-.+..+...
T Consensus 262 p~~~~~a~~~~~~~~~v 278 (334)
T KOG2933|consen 262 PELREAARFVRLELKEV 278 (334)
T ss_pred cccccchhHHHHhHHHH
Confidence 99996554444444433
No 148
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.49 E-value=1e+03 Score=33.51 Aligned_cols=299 Identities=17% Similarity=0.209 Sum_probs=143.7
Q ss_pred hhhHHHHHHHHHHHHhccccccc---HHHHHHHHHHhcCCCcH---HHHHHHHHHHHHhh--------------hhhHHH
Q 000321 156 PESVLSSMQTIMIVLLEESEDIQ---EDLLVILLSALGRNKND---TARRLAMNVIEQCA--------------GKLEAG 215 (1670)
Q Consensus 156 ~~~V~~~m~~IL~~vIeEse~vp---~~vLd~IL~~l~~~~~~---~a~~lA~~v~~~~~--------------dkL~~~ 215 (1670)
|.-++..+..++..||.. .-| +.+++.|.+.+-..... +|-.+-.+|+.++- +-+-|.
T Consensus 102 p~~iRvql~~~l~~Ii~~--D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~ 179 (1010)
T KOG1991|consen 102 PELIRVQLTACLNTIIKA--DYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPD 179 (1010)
T ss_pred chHHHHHHHHHHHHHHhc--CCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH
Confidence 667778888888888876 444 78888877776433211 44334444444443 345566
Q ss_pred HHHHHHHhhcCCCCCCCCcchHHHHHHHHHhh-----------Cchhhhhhhhhh--------cccccCCChHHHH----
Q 000321 216 IKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRC-----------SPQILSGVVPYL--------TGELLTDQLDTRL---- 272 (1670)
Q Consensus 216 I~qyf~~il~~~~~~~~~~~~~h~Li~eL~~~-----------~P~lL~~ViP~L--------e~EL~sed~~~Rl---- 272 (1670)
|.++|++++..++.. ......+|..++.. +|+.+.+.+... =.|..+.|++.|.
T Consensus 180 il~~~~~ll~~~s~~---s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~w 256 (1010)
T KOG1991|consen 180 ILQIFNGLLSQESYQ---SVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPW 256 (1010)
T ss_pred HHHHHHhhccccchH---HHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhhcccccc
Confidence 777777776654221 11233344443332 444444433221 1245555666664
Q ss_pred -----HHHHHHHHhhcCCCCC---------chhhc-----HHHHHHHHhhh---cC---CChhHHHHHHHHhHHHHhcC-
Q 000321 273 -----KAVGLVGDLFAVPGSA---------NNEQF-----HSVFSEFLKRL---TD---RIVAVRMSVLEHVKSCLLTD- 326 (1670)
Q Consensus 273 -----~At~llG~mfs~~~~~---------~~~~y-----~~~w~~fL~R~---~D---~s~~VR~~~v~~~~~iL~~~- 326 (1670)
=|.-.|-|+|.--|+. |++-| +-+...||+=. .- .++.|=.-.+.+..+++...
T Consensus 257 wK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~ 336 (1010)
T KOG1991|consen 257 WKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQCVSHAS 336 (1010)
T ss_pred hhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhccHHH
Confidence 4788889998654422 11111 22222222211 11 22333223333333332211
Q ss_pred ------CCCC-ChHHHH-HHHHh-------hhCCChhHHHHHHHHHHHHhhh-hhcCCCCHHHHHHHHHhhccCChhHHH
Q 000321 327 ------PSRA-DAPQIL-TALCD-------RLLDFDENVRKQVVAVICDVAC-HALNSIPVETVKLVAERLRDKSVLVKR 390 (1670)
Q Consensus 327 ------p~~~-~~~eii-~~L~~-------rL~D~DEkVR~aaVkai~~la~-~~l~~Vs~elL~~laeR~RDKK~~VR~ 390 (1670)
|+.. ...+++ ..+|- -=.||+|=||+- ... ..+..-....+..+..-++-++..+=.
T Consensus 337 twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~-------~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~ 409 (1010)
T KOG1991|consen 337 TWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKK-------FDIFEDGYSPDTAALDFLTTLVSKRGKETLP 409 (1010)
T ss_pred HHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhc-------CchhcccCCCcHHHHHHHHHHHHhcchhhhh
Confidence 1100 000111 11110 115777778875 111 112222223344455555555556666
Q ss_pred HHHHHHHHHHHHHhhhccCCCc------chhccccchHHHhhhhccCCCCchhHHHHhhccCcCCCCCH----HHHHHHH
Q 000321 391 YTMERLADIFRGCCLRNFNGSI------NQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSV----KDRVRHW 460 (1670)
Q Consensus 391 eAm~~La~LY~~~~~~~~~~~~------~~~~~~wIPs~IL~~~Y~nD~~~~lVE~vL~e~LlP~~~~~----~~R~~~l 460 (1670)
-.|..+..++..|-........ +--.++.|-+.|+. +.+=..++|..+..+++|.-.++ ..|+--.
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K----~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~v 485 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLK----KSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWV 485 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHcc----CCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHH
Confidence 6788888888876433111111 11235666655553 22112478899999999875444 3444444
Q ss_pred HHHHhcCCHH
Q 000321 461 VRIFSGFDRI 470 (1670)
Q Consensus 461 l~l~~~LD~~ 470 (1670)
++.|+..|-+
T Consensus 486 l~~~~~~df~ 495 (1010)
T KOG1991|consen 486 LSQFSSIDFK 495 (1010)
T ss_pred HHHHHhccCC
Confidence 4556655443
No 149
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=45.79 E-value=1.1e+02 Score=39.06 Aligned_cols=37 Identities=14% Similarity=0.264 Sum_probs=30.8
Q ss_pred cccceEEEecCCCCceEEEEEEEecCCC------CeeEEEccC
Q 000321 1371 LIGYRIKVWWPMDKQFYEGTIKSYDPIK------KKHVILYDD 1407 (1670)
Q Consensus 1371 lvG~rv~V~Wp~D~~~Y~G~V~~y~~~~------~~H~v~YdD 1407 (1670)
-||.+|.++|..|..||.++|....... ...-|.|..
T Consensus 55 ~VGekVla~~~~Dg~~~~A~VI~~R~~~~~~~~~~~YYVHY~g 97 (450)
T PLN00104 55 EVGTRVMCRWRFDGKYHPVKVIERRRGGSGGPNDYEYYVHYTE 97 (450)
T ss_pred ccCCEEEEEECCCCCEEEEEEEEEeccCCCCCCCceEEEEEec
Confidence 4999999999999999999999998633 356777763
No 150
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=44.84 E-value=1.2e+02 Score=39.74 Aligned_cols=130 Identities=17% Similarity=0.131 Sum_probs=90.7
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHH--H----hhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHH
Q 000321 264 LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEF--L----KRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILT 337 (1670)
Q Consensus 264 ~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~f--L----~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~eii~ 337 (1670)
..-+..+|..++.-++..+.. +|+.|..- | .=..|.+..||...++-...+...+|...-..+..+
T Consensus 285 ~Dv~d~IRv~c~~~L~dwi~l--------vP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~e 356 (740)
T COG5537 285 IDVDDVIRVLCSMSLRDWIGL--------VPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVE 356 (740)
T ss_pred cchhHHHHHHHHHHHHHHHhc--------chHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 345778999999999987754 34444321 1 125799999999999999998888887654556665
Q ss_pred HHHhh-----hCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChh---HHHHHHHHHHHHHHHHh
Q 000321 338 ALCDR-----LLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVL---VKRYTMERLADIFRGCC 404 (1670)
Q Consensus 338 ~L~~r-----L~D~DEkVR~aaVkai~~la~~~l~~Vs~elL~~laeR~RDKK~~---VR~eAm~~La~LY~~~~ 404 (1670)
-+..| ..|.|= ||..+++..|.+.. +-.++..-+-.+.-.|-|=++. +|.++...++++-....
T Consensus 357 RFk~rILE~~r~D~d~-VRi~sik~l~~lr~--lg~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK~~aevi 428 (740)
T COG5537 357 RFKDRILEFLRTDSDC-VRICSIKSLCYLRI--LGVLSSSEILIVSSCMLDIIPDSRENIVESVESICKIDAEVI 428 (740)
T ss_pred HHHHHHHHHHhhccch-hhHHHHHHHHHHHH--hcccchhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHH
Confidence 55554 578888 99999999877543 3334444344444557787776 78888888888776654
No 151
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=44.07 E-value=1.6e+02 Score=36.05 Aligned_cols=107 Identities=16% Similarity=0.204 Sum_probs=72.3
Q ss_pred HHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHH
Q 000321 243 DVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSC 322 (1670)
Q Consensus 243 eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~i 322 (1670)
.|.-+.+.+|.+++|-||+| +.+.=-.+.+++-.+-..-+.. --|..+|.+.+ .+|.+|...+.++..-
T Consensus 131 ~L~p~l~~li~slLpGLede----~sE~~~~~~~ll~~l~~~v~~~--~F~~~lwl~ii-----~sp~~Rl~al~~l~~~ 199 (307)
T PF04118_consen 131 ALRPCLKGLILSLLPGLEDE----GSEFFDRTLKLLDKLKEAVGDK--YFWQCLWLCII-----TSPSRRLGALNYLLRR 199 (307)
T ss_pred HHHHHHHHHHHHhccccccC----CchHHHHHHHHHHHHHHhcChh--HHHHHHHHHHh-----cCcchhHHHHHHHHHh
Confidence 56678899999999999985 3333334445555444332322 34567888777 6899999988887654
Q ss_pred HhcCC--------------CCCChHHHHHHHHhhhCCChhHHHHHHHHHHHH
Q 000321 323 LLTDP--------------SRADAPQILTALCDRLLDFDENVRKQVVAVICD 360 (1670)
Q Consensus 323 L~~~p--------------~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~ 360 (1670)
+-... -..+..-++.+|+..|.|.+.-|++.+...+..
T Consensus 200 l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~ 251 (307)
T PF04118_consen 200 LPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLS 251 (307)
T ss_pred CCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 43211 012233577999999999999999997777644
No 152
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=43.58 E-value=1.4e+02 Score=33.77 Aligned_cols=98 Identities=14% Similarity=0.149 Sum_probs=71.2
Q ss_pred ccCCChHHHHHHHHHHHHhhcCCCC-------------Cc-----------hhhcHHHHHHHHhhhcCCChhHHHHHHHH
Q 000321 263 LLTDQLDTRLKAVGLVGDLFAVPGS-------------AN-----------NEQFHSVFSEFLKRLTDRIVAVRMSVLEH 318 (1670)
Q Consensus 263 L~sed~~~Rl~At~llG~mfs~~~~-------------~~-----------~~~y~~~w~~fL~R~~D~s~~VR~~~v~~ 318 (1670)
|...+..+|..|..++.-|+.+... .| .+-|..+.... -...++.+=.+++++
T Consensus 49 l~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L---~~E~~~~~l~q~lK~ 125 (182)
T PF13251_consen 49 LKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLAL---QAEKSPPVLTQLLKC 125 (182)
T ss_pred HcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHH---hcccccHHHHHHHHH
Confidence 4567899999999999999977521 11 23344444333 234567788899999
Q ss_pred hHHHHhcCCCC----CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhh
Q 000321 319 VKSCLLTDPSR----ADAPQILTALCDRLLDFDENVRKQVVAVICDVAC 363 (1670)
Q Consensus 319 ~~~iL~~~p~~----~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~ 363 (1670)
+..++.+-|+. .....++..+..++...|..||.++.-+++-+..
T Consensus 126 la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 126 LAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 98888887864 3445777888899999999999998888766543
No 153
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=43.41 E-value=14 Score=49.21 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=18.5
Q ss_pred CChhhHhHhHHHHHHHHHHhhhc
Q 000321 834 SSSVDKAHLRLASAKAVLRLSRQ 856 (1670)
Q Consensus 834 tp~~~ksrLRLaAa~~lLKLAr~ 856 (1670)
-|.+..--+|-.|.+.|+-|||.
T Consensus 752 ~P~t~aD~IRalAc~~L~GLaR~ 774 (1516)
T KOG1832|consen 752 NPPTTADCIRALACRVLLGLARD 774 (1516)
T ss_pred CCCCcHHHHHHHHHHHHhccccC
Confidence 36667777899999999999985
No 154
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.35 E-value=1.1e+03 Score=32.57 Aligned_cols=285 Identities=14% Similarity=0.162 Sum_probs=154.9
Q ss_pred CChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCCh
Q 000321 307 RIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSV 386 (1670)
Q Consensus 307 ~s~~VR~~~v~~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~Vs~elL~~laeR~RDKK~ 386 (1670)
++|-=++..+..+..++..++.. ...+.+.+..+|.--+|.|=.+|-.+|+.+.+.....+.. .+..+.--+.--++
T Consensus 220 ~~~~A~~~lir~~~~~l~~~~~~--~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p-avs~Lq~flssp~~ 296 (865)
T KOG1078|consen 220 KSPLAVCMLIRIASELLKENQQA--DSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP-AVSVLQLFLSSPKV 296 (865)
T ss_pred cchhHHHHHHHHHHHHhhhcccc--hhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch-HHHHHHHHhcCcHH
Confidence 45555666666676767666432 2467788999999999999999999999998877766655 34444455566678
Q ss_pred hHHHHHHHHHHHHHHHHhhhccCCCcchhccccchHHHhhhh-----ccCCCCchhHHHHhhccCcCC-CCCHHHHHHHH
Q 000321 387 LVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCL-----YDKDFGSDTIESVLCGSLFPT-GFSVKDRVRHW 460 (1670)
Q Consensus 387 ~VR~eAm~~La~LY~~~~~~~~~~~~~~~~~~wIPs~IL~~~-----Y~nD~~~~lVE~vL~e~LlP~-~~~~~~R~~~l 460 (1670)
..|-.|+..|-++=-.+ |.++-.|- .+.|.+ ..|-..--..|+-. .....+|..+.
T Consensus 297 ~lRfaAvRtLnkvAm~~-----------------P~~v~~cN~elE~lItd~N-rsIat~AITtLLKTG~e~sv~rLm~q 358 (865)
T KOG1078|consen 297 ALRFAAVRTLNKVAMKH-----------------PQAVTVCNLDLESLITDSN-RSIATLAITTLLKTGTESSVDRLMKQ 358 (865)
T ss_pred HHHHHHHHHHHHHHHhC-----------------CccccccchhHHhhhcccc-cchhHHHHHHHHHhcchhHHHHHHHH
Confidence 88999988876665543 33333221 012211 11111111111111 11223343333
Q ss_pred H-HHHhcCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCchHHHHHH
Q 000321 461 V-RIFSGFDR-------IEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENF 532 (1670)
Q Consensus 461 l-~l~~~LD~-------~~~kal~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kl~~~I~~Ls~~FPDp~Ka~~~L 532 (1670)
. .+.+.+++ .++.+|...+-++ ...+..||.-.-. ++|. =+.++.+-.+|-.+...-||
T Consensus 359 I~~fv~disDeFKivvvdai~sLc~~fp~k---~~~~m~FL~~~Lr-~eGg-~e~K~aivd~Ii~iie~~pd-------- 425 (865)
T KOG1078|consen 359 ISSFVSDISDEFKIVVVDAIRSLCLKFPRK---HTVMMNFLSNMLR-EEGG-FEFKRAIVDAIIDIIEENPD-------- 425 (865)
T ss_pred HHHHHHhccccceEEeHHHHHHHHhhccHH---HHHHHHHHHHHHH-hccC-chHHHHHHHHHHHHHHhCcc--------
Confidence 2 34444433 3444554444444 3455666654211 1222 23444455555555455555
Q ss_pred HHHHhhccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHhhhccccChhHHHHHHHHHHhh
Q 000321 533 LILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHR----LYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQ 608 (1670)
Q Consensus 533 ~kf~kLnD~RiykLLk~~id~~td~~t~~~a~~ELlkkL~~~~~----l~e~l~~Ll~R~S~li~Nks~V~~LL~~v~~~ 608 (1670)
.+.+++-.|-.++-|.+.+.- --.++..||...| ...++. .+||+-++..-+-+
T Consensus 426 -----sKe~~L~~LCefIEDce~~~i-----~~rILhlLG~EgP~a~~Pskyir--------~iyNRviLEn~ivR---- 483 (865)
T KOG1078|consen 426 -----SKERGLEHLCEFIEDCEFTQI-----AVRILHLLGKEGPKAPNPSKYIR--------FIYNRVILENAIVR---- 483 (865)
T ss_pred -----hhhHHHHHHHHHHHhccchHH-----HHHHHHHHhccCCCCCCcchhhH--------HHhhhhhhhhhhhH----
Confidence 345566666666666554432 2356777774322 122333 25666555443331
Q ss_pred cccchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccccchHH
Q 000321 609 KSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEG 656 (1670)
Q Consensus 609 ~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v~~Li~lL~~~~~~~~~~ 656 (1670)
..|...|-.|+.-+|.+..+-.--|..++.+.++.+.+.
T Consensus 484 ---------aaAv~alaKfg~~~~~l~~sI~vllkRc~~D~DdevRdr 522 (865)
T KOG1078|consen 484 ---------AAAVSALAKFGAQDVVLLPSILVLLKRCLNDSDDEVRDR 522 (865)
T ss_pred ---------HHHHHHHHHHhcCCCCccccHHHHHHHHhcCchHHHHHH
Confidence 223455666777788888877778888888866554443
No 155
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.67 E-value=1.3e+03 Score=32.67 Aligned_cols=111 Identities=14% Similarity=0.149 Sum_probs=71.0
Q ss_pred HHHHHHhhCc--hhhhh-hhhhhcccccCCChHHHHHHHHHHHHhhcCC---CCCchhhcHHHHHHHHhhhcCCChhHHH
Q 000321 240 VIYDVYRCSP--QILSG-VVPYLTGELLTDQLDTRLKAVGLVGDLFAVP---GSANNEQFHSVFSEFLKRLTDRIVAVRM 313 (1670)
Q Consensus 240 Li~eL~~~~P--~lL~~-ViP~Le~EL~sed~~~Rl~At~llG~mfs~~---~~~~~~~y~~~w~~fL~R~~D~s~~VR~ 313 (1670)
|..-|-+-+| +.+-. +.+++-.++++.---+|..|..+++..=+.. ..++.+.+..+.++++. |.+-+||+
T Consensus 445 l~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~---d~~lPV~V 521 (1010)
T KOG1991|consen 445 LASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLN---DNELPVRV 521 (1010)
T ss_pred HHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcc---CCcCchhh
Confidence 3444445577 44333 4455555677888899999999999654221 23577788888887775 89999999
Q ss_pred HHHHHhHHHHhcCCCC-----CChHHHHHHHHhhhCCChhHHHHH
Q 000321 314 SVLEHVKSCLLTDPSR-----ADAPQILTALCDRLLDFDENVRKQ 353 (1670)
Q Consensus 314 ~~v~~~~~iL~~~p~~-----~~~~eii~~L~~rL~D~DEkVR~a 353 (1670)
+.+-+...++.+.+.. ...+.+++.|....++++-.+=..
T Consensus 522 eAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~ 566 (1010)
T KOG1991|consen 522 EAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTN 566 (1010)
T ss_pred HHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHH
Confidence 9999888877766532 122344444444444444443333
No 156
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=40.53 E-value=3.7e+02 Score=37.13 Aligned_cols=144 Identities=16% Similarity=0.229 Sum_probs=93.7
Q ss_pred hhhHHHHHHHHHHHHhcccccccHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHhhhhhHHHHHHHHHH---hhcCCC
Q 000321 156 PESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKND----TARRLAMNVIEQCAGKLEAGIKQFLVS---SMSGDS 228 (1670)
Q Consensus 156 ~~~V~~~m~~IL~~vIeEse~vp~~vLd~IL~~l~~~~~~----~a~~lA~~v~~~~~dkL~~~I~qyf~~---il~~~~ 228 (1670)
+++......+|--.|.+-.+++..-+|..++-+|...++. +-++.-..++..|.-+.-+. ||+.- +...+
T Consensus 1089 ~~~~~~~vSdikd~IvEsndsmn~lLlkflFthfs~lrN~~~sr~~~q~l~k~~~~~p~k~ves--Qy~e~fp~~~N~~- 1165 (1525)
T COG5219 1089 PPQFVASVSDIKDCIVESNDSMNYLLLKFLFTHFSYLRNEALSRAVSQLLLKCRKGFPIKFVES--QYFEGFPEFPNAD- 1165 (1525)
T ss_pred cHHHHHhhccchhhhhhcchHHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHhCCCchhhhh--hhhhcCcccCCch-
Confidence 4555556667766666667789999999888887654433 33444444555554333222 55431 11111
Q ss_pred CCCCCcchHHHHHHHHHhhCchhhhhhhhhhcccccCCCh--HHHHH-----------HHHHHHHhhcCCCCCc------
Q 000321 229 RPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQL--DTRLK-----------AVGLVGDLFAVPGSAN------ 289 (1670)
Q Consensus 229 ~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~--~~Rl~-----------At~llG~mfs~~~~~~------ 289 (1670)
++ ++++..+..|-..|++|+. .+|++ ..+.|.+||--||--+
T Consensus 1166 ----------d~---------qmesv~mk~LreKls~d~~El~l~~~~~s~y~~d~Sl~~~~v~~~i~~Pgd~l~~v~k~ 1226 (1525)
T COG5219 1166 ----------DE---------QMESVCMKFLREKLSADDNELLLMLLAKSNYRNDRSLDMKGVVRMIERPGDHLLSVKKE 1226 (1525)
T ss_pred ----------hH---------HHHHHHHHHHHHhhhhhhHHHHHHHHHHhCCCcccccCHhHHHHHhccccchhhhcCHH
Confidence 11 5566667777777777765 44444 4678999999887433
Q ss_pred ------hhhcHHHHHHHHhhhcCCChhHHHHHHHHhHH
Q 000321 290 ------NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKS 321 (1670)
Q Consensus 290 ------~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~ 321 (1670)
...|=.+|+--++-|.|.+-.+|..++++...
T Consensus 1227 ey~e~~~~vYL~~w~lI~~hf~dT~yNm~~siI~qL~~ 1264 (1525)
T COG5219 1227 EYRERHTIVYLPLWRLIYGHFADTVYNMYSSIISQLDM 1264 (1525)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 12477889999999999999999999988753
No 157
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=39.32 E-value=1.1e+03 Score=31.48 Aligned_cols=186 Identities=15% Similarity=0.015 Sum_probs=110.5
Q ss_pred HHHHHhhCchhhhhhhhhhcccccCC-ChHHHHHHHHHHHHhhcCCCCCchhhc-HHHHHHHHhhhcCCChhHHHHHHHH
Q 000321 241 IYDVYRCSPQILSGVVPYLTGELLTD-QLDTRLKAVGLVGDLFAVPGSANNEQF-HSVFSEFLKRLTDRIVAVRMSVLEH 318 (1670)
Q Consensus 241 i~eL~~~~P~lL~~ViP~Le~EL~se-d~~~Rl~At~llG~mfs~~~~~~~~~y-~~~w~~fL~R~~D~s~~VR~~~v~~ 318 (1670)
.--+.+.--+...+.+|-.|+-|.+. +...|-..+-+.|-+- -+. ...+.- ...-..|+.-..=.++.||.++..|
T Consensus 42 ~~~~~~~~~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a-~~~-~~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~ 119 (569)
T KOG1242|consen 42 EAAINQHGDQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLA-FHL-QIVDPRPISIIEILLEELDTPSKSVQRAVSTC 119 (569)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHH-Hhc-cccCcchhHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 33445566677777888888888765 5666666666666432 211 111111 2233467777788999999999999
Q ss_pred hHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh--cCCCCHHHHHHHHHhhccCChhHHHHHHHHH
Q 000321 319 VKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA--LNSIPVETVKLVAERLRDKSVLVKRYTMERL 396 (1670)
Q Consensus 319 ~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~--l~~Vs~elL~~laeR~RDKK~~VR~eAm~~L 396 (1670)
.+......-. .....+.+-+.+.+.=++-.=|..+-..+.-+..-. .+..+..+|..+..-++||+..-|++ ...+
T Consensus 120 l~~~~~~~~~-~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re-~~~~ 197 (569)
T KOG1242|consen 120 LPPLVVLSKG-LSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNRE-AALL 197 (569)
T ss_pred hhhHHHHhhc-cCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHH-HHHH
Confidence 8886654322 223455666666666556666666555554444322 33456678999999999999988888 3333
Q ss_pred HHHHHHHhhhccCCCcchhccccchHHHhhhhccCCCC
Q 000321 397 ADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFG 434 (1670)
Q Consensus 397 a~LY~~~~~~~~~~~~~~~~~~wIPs~IL~~~Y~nD~~ 434 (1670)
+-.+. +... |+....-+--+-..||.|+|+....
T Consensus 198 a~~~~--~~~L--g~~~EPyiv~~lp~il~~~~d~~~~ 231 (569)
T KOG1242|consen 198 AFEAA--QGNL--GPPFEPYIVPILPSILTNFGDKINK 231 (569)
T ss_pred HHHHH--HHhc--CCCCCchHHhhHHHHHHHhhccchh
Confidence 32222 2221 1111122334445677788876644
No 158
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=39.31 E-value=7.4e+02 Score=29.62 Aligned_cols=64 Identities=16% Similarity=0.266 Sum_probs=43.7
Q ss_pred HHHHhhhCCChhHHHHHHHHHHHHhhhhhc-CCCCHH----HHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000321 337 TALCDRLLDFDENVRKQVVAVICDVACHAL-NSIPVE----TVKLVAERLRDKSVLVKRYTMERLADIFRG 402 (1670)
Q Consensus 337 ~~L~~rL~D~DEkVR~aaVkai~~la~~~l-~~Vs~e----lL~~laeR~RDKK~~VR~eAm~~La~LY~~ 402 (1670)
+.|...|.+.|+.+|..++..++.+...-. ..++.+ ++.-+.+|+.|.. .|.- |+.+|..|.+.
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~-~~~~-~l~gl~~L~~~ 70 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHA-CVQP-ALKGLLALVKM 70 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHh-hHHH-HHHHHHHHHhC
Confidence 467889999999999999999887765443 233332 3456778886653 3433 37777777753
No 159
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.13 E-value=1.2e+03 Score=31.94 Aligned_cols=124 Identities=19% Similarity=0.134 Sum_probs=97.8
Q ss_pred HHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHH
Q 000321 238 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 317 (1670)
Q Consensus 238 h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~ 317 (1670)
|.-+.-.-..-|++=...++.+-..-..++..+|.+|.+++|.+= . ...-.-++...++-.+|..|.||...+-
T Consensus 70 yLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~-v-----~~i~ey~~~Pl~~~l~d~~~yvRktaa~ 143 (734)
T KOG1061|consen 70 YLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLR-V-----DKITEYLCDPLLKCLKDDDPYVRKTAAV 143 (734)
T ss_pred HHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEe-e-----hHHHHHHHHHHHHhccCCChhHHHHHHH
Confidence 333444456688888888999999999999999999999988442 2 2222357778888999999999999998
Q ss_pred HhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcC
Q 000321 318 HVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN 367 (1670)
Q Consensus 318 ~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~ 367 (1670)
++...-.-++..-...-++..|...+.|.+.-|=..|+.++..+...+.+
T Consensus 144 ~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 144 CVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred HHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence 88876666665544557888999999999999999999999998876654
No 160
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.83 E-value=1.2e+02 Score=40.41 Aligned_cols=120 Identities=22% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHhh------CchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhH
Q 000321 238 HEVIYDVYRC------SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAV 311 (1670)
Q Consensus 238 h~Li~eL~~~------~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~V 311 (1670)
|.+++|.-.. .|+++...+-+|-.-|.+-+..+|-+|.+.+.+|.+...+.=+-.|+ .=.-+..=..+++++|
T Consensus 307 naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h-~d~Ii~sLkterDvSi 385 (938)
T KOG1077|consen 307 NAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH-QDTIINSLKTERDVSI 385 (938)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH-HHHHHHHhccccchHH
Q ss_pred HHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhh
Q 000321 312 RMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVA 362 (1670)
Q Consensus 312 R~~~v~~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la 362 (1670)
|...|+. |-.-.++.-+.+|+..|..-|.-.|--+|-..|--+.=+|
T Consensus 386 rrravDL----LY~mcD~~Nak~IV~elLqYL~tAd~sireeivlKvAILa 432 (938)
T KOG1077|consen 386 RRRAVDL----LYAMCDVSNAKQIVAELLQYLETADYSIREEIVLKVAILA 432 (938)
T ss_pred HHHHHHH----HHHHhchhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
No 161
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=38.56 E-value=5.9e+02 Score=32.91 Aligned_cols=163 Identities=13% Similarity=0.167 Sum_probs=95.4
Q ss_pred hhhHHHHHHHHHHHHhcccccccH----HHHHHHHHHhcCCCcH----HHHHHHHHHHHHhhhhhHHH----HHHHHHHh
Q 000321 156 PESVLSSMQTIMIVLLEESEDIQE----DLLVILLSALGRNKND----TARRLAMNVIEQCAGKLEAG----IKQFLVSS 223 (1670)
Q Consensus 156 ~~~V~~~m~~IL~~vIeEse~vp~----~vLd~IL~~l~~~~~~----~a~~lA~~v~~~~~dkL~~~----I~qyf~~i 223 (1670)
...-...|..|+.-+-+.+.+|.. ++|..+|.-+...+.. -|.++-..+|...+++|..+ |+.++-..
T Consensus 301 a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa 380 (516)
T KOG2956|consen 301 ASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAA 380 (516)
T ss_pred hhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHH
Confidence 345667788888888888888888 4555555666553332 66666677777777776554 33443221
Q ss_pred hcCCCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCC-CchhhcHHHHHHHHh
Q 000321 224 MSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGS-ANNEQFHSVFSEFLK 302 (1670)
Q Consensus 224 l~~~~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~-~~~~~y~~~w~~fL~ 302 (1670)
-...+. ......-..+.-+..+.|..=..||-.+ +..+|.+.=.++++.+.+||..-.. .+...-|++-=.++.
T Consensus 381 ~ds~~~--v~~~Aeed~~~~las~~P~~~I~~i~~~---Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iq 455 (516)
T KOG2956|consen 381 KDSQDE--VMRVAEEDCLTTLASHLPLQCIVNISPL---ILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQ 455 (516)
T ss_pred hCCchh--HHHHHHHHHHHHHHhhCchhHHHHHhhH---HhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHH
Confidence 111110 0111223344555555554433322221 3347777778899999999976432 233444555566666
Q ss_pred hhcCCChhHHHHHHHHhHHHH
Q 000321 303 RLTDRIVAVRMSVLEHVKSCL 323 (1670)
Q Consensus 303 R~~D~s~~VR~~~v~~~~~iL 323 (1670)
-+.-.+..||.++|=|...++
T Consensus 456 ay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 456 AYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred HhcCchHHhhhhHHHhHHHHH
Confidence 777778888888777665543
No 162
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=38.26 E-value=19 Score=48.08 Aligned_cols=22 Identities=32% Similarity=0.241 Sum_probs=15.2
Q ss_pred hhcccccccCccccccCCCCCC
Q 000321 1174 REINLDNLGVLNKFESSNGHKH 1195 (1670)
Q Consensus 1174 ~~~~~~~~~~~~~~~~~~~~~~ 1195 (1670)
-||-+=|+-.-..-++-|+|-+
T Consensus 1123 Geik~~nv~sG~~e~s~ncH~S 1144 (1516)
T KOG1832|consen 1123 GEIKIFNVSSGSMEESVNCHQS 1144 (1516)
T ss_pred ceEEEEEccCcccccccccccc
Confidence 4566666666777788888843
No 163
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=38.13 E-value=1.3e+02 Score=35.66 Aligned_cols=135 Identities=14% Similarity=0.150 Sum_probs=73.8
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhC
Q 000321 265 TDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLL 344 (1670)
Q Consensus 265 sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~eii~~L~~rL~ 344 (1670)
++|+.++..|+-++|..-+.+...-.-..-..-.-..+-..|.++.||...+.+..++=.+......+..-+..+++...
T Consensus 24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~ 103 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETV 103 (254)
T ss_pred CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHh
Confidence 67899999999999986544321111111112233566778899999987777765422221111222233444555433
Q ss_pred C--ChhHHHHHHHHHHHHhhhhh-cCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000321 345 D--FDENVRKQVVAVICDVACHA-LNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 399 (1670)
Q Consensus 345 D--~DEkVR~aaVkai~~la~~~-l~~Vs~elL~~laeR~RDKK~~VR~eAm~~La~L 399 (1670)
. .|..|..++.+++..++... .+++=...+..+...+.-=...+|..++..|..|
T Consensus 104 s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 104 SSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred cCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 3 36788889889988876532 1211111222222223333456777777766655
No 164
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=38.11 E-value=1.5e+02 Score=36.25 Aligned_cols=87 Identities=18% Similarity=0.221 Sum_probs=66.8
Q ss_pred HHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhh-CCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHH
Q 000321 311 VRMSVLEHVKSCLLTDPSRADAPQILTALCDRL-LDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVK 389 (1670)
Q Consensus 311 VR~~~v~~~~~iL~~~p~~~~~~eii~~L~~rL-~D~DEkVR~aaVkai~~la~~~l~~Vs~elL~~laeR~RDKK~~VR 389 (1670)
=|+.+++....+ |.......|++.|...+ .+..|.+..+.+.+++.-....-..+|..++..+..=+.|||+.||
T Consensus 3 ~r~~~~~~L~~l----~~~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR 78 (339)
T PF12074_consen 3 QRVLHASMLSSL----PSSSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVR 78 (339)
T ss_pred HHHHHHHHHHhC----CCcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHH
Confidence 355555554432 22235668888888776 5699999999999997643333378899999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 000321 390 RYTMERLADIFR 401 (1670)
Q Consensus 390 ~eAm~~La~LY~ 401 (1670)
+.-+..++.++.
T Consensus 79 ~~w~~~~~~~~~ 90 (339)
T PF12074_consen 79 RAWLLCLGEALW 90 (339)
T ss_pred HHHHHHHHHHHh
Confidence 999999999877
No 165
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=37.82 E-value=2.1e+02 Score=35.00 Aligned_cols=129 Identities=20% Similarity=0.268 Sum_probs=86.0
Q ss_pred ChHHHHH---HHHHHHHhhcCC-CCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCCh--------HH
Q 000321 267 QLDTRLK---AVGLVGDLFAVP-GSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADA--------PQ 334 (1670)
Q Consensus 267 d~~~Rl~---At~llG~mfs~~-~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~--------~e 334 (1670)
|+..|-. .|..|-|+|... |..++..|....+.=| ..| +..|.+..++.++-||.+ .+.... .+
T Consensus 53 NenhrekttlcVscLERLfkakegahlapnlmpdLQrGL--iad-dasVKiLackqigcilEd-cDtnaVseillvvNae 128 (524)
T KOG4413|consen 53 NENHREKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGL--IAD-DASVKILACKQIGCILED-CDTNAVSEILLVVNAE 128 (524)
T ss_pred cccccchhhhHHHHHHHHHhhccchhhchhhhHHHHhcc--cCC-cchhhhhhHhhhhHHHhc-CchhhHHHHHHHhhhh
Confidence 4444544 788889999765 5667777766655433 334 677888888888766654 332222 25
Q ss_pred HHHHHHhhhCCChhHHHHHHHHHHHHhhhhh--cCCC-CHH-----HHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000321 335 ILTALCDRLLDFDENVRKQVVAVICDVACHA--LNSI-PVE-----TVKLVAERLRDKSVLVKRYTMERLADIFRG 402 (1670)
Q Consensus 335 ii~~L~~rL~D~DEkVR~aaVkai~~la~~~--l~~V-s~e-----lL~~laeR~RDKK~~VR~eAm~~La~LY~~ 402 (1670)
|.+.+..++.-.|+.|-.+|++.|..++.+. ++.+ +.+ -++.++.|+-| -+|...++.+-++|..
T Consensus 129 ilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcnd---iaRvRVleLIieifSi 201 (524)
T KOG4413|consen 129 ILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCND---IARVRVLELIIEIFSI 201 (524)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhh---HHHHHHHHHHHHHHhc
Confidence 6677888999999999999999999988632 3322 222 35567777754 4666666777777764
No 166
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=37.82 E-value=1.4e+02 Score=39.96 Aligned_cols=96 Identities=18% Similarity=0.171 Sum_probs=53.0
Q ss_pred ccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHH-HHhHHHHhcCCCCCChHHHHHHH
Q 000321 261 GELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVL-EHVKSCLLTDPSRADAPQILTAL 339 (1670)
Q Consensus 261 ~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v-~~~~~iL~~~p~~~~~~eii~~L 339 (1670)
+|=++|. -.|=+|+-+---||+..+ ...++.++.+ .|++|-+|..=+ ..+-...-+. + ..-|-.-|
T Consensus 494 ~ETQHek-i~RGl~vGiaL~~ygrqe-----~Ad~lI~el~---~dkdpilR~~Gm~t~alAy~GTg--n--nkair~lL 560 (929)
T KOG2062|consen 494 QETQHEK-IIRGLAVGIALVVYGRQE-----DADPLIKELL---RDKDPILRYGGMYTLALAYVGTG--N--NKAIRRLL 560 (929)
T ss_pred hhhhHHH-HHHHHHHhHHHHHhhhhh-----hhHHHHHHHh---cCCchhhhhhhHHHHHHHHhccC--c--hhhHHHhh
Confidence 3333333 356666666556666543 2223444433 477888887633 3222211111 1 12333455
Q ss_pred HhhhCCChhHHHHHHHHHHHHhhhhhcCCC
Q 000321 340 CDRLLDFDENVRKQVVAVICDVACHALNSI 369 (1670)
Q Consensus 340 ~~rL~D~DEkVR~aaVkai~~la~~~l~~V 369 (1670)
.--..|.++.||++||.+|+-+.+.+++.+
T Consensus 561 h~aVsD~nDDVrRaAVialGFVl~~dp~~~ 590 (929)
T KOG2062|consen 561 HVAVSDVNDDVRRAAVIALGFVLFRDPEQL 590 (929)
T ss_pred cccccccchHHHHHHHHHheeeEecChhhc
Confidence 555778888888888888877766665544
No 167
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=37.39 E-value=9e+02 Score=30.06 Aligned_cols=69 Identities=13% Similarity=0.263 Sum_probs=49.3
Q ss_pred cccccCCChHHHHHHHHHHHHhhcCCC-CCchhhc---HHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCC
Q 000321 260 TGELLTDQLDTRLKAVGLVGDLFAVPG-SANNEQF---HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR 329 (1670)
Q Consensus 260 e~EL~sed~~~Rl~At~llG~mfs~~~-~~~~~~y---~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~ 329 (1670)
..-|.++|=-+|..++++||+++..+. .+++..| |+-....+.=..|++..||.+...--+ +.++||..
T Consensus 215 ~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFK-vFVANp~K 287 (335)
T PF08569_consen 215 NKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFK-VFVANPNK 287 (335)
T ss_dssp HHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHH-HHHH-SS-
T ss_pred HHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHH-HHHhCCCC
Confidence 344667999999999999999999864 2334444 888888889999999999999876554 55566753
No 168
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=37.14 E-value=3.5e+02 Score=33.59 Aligned_cols=96 Identities=16% Similarity=0.145 Sum_probs=63.5
Q ss_pred cccCCChHHHHHHHHHHHHhhcCCC-C--Cchh--hcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHH-
Q 000321 262 ELLTDQLDTRLKAVGLVGDLFAVPG-S--ANNE--QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQI- 335 (1670)
Q Consensus 262 EL~sed~~~Rl~At~llG~mfs~~~-~--~~~~--~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei- 335 (1670)
.|.+.+..+|..|+.+||.++.... + .+.. .-+.+...+- .|.+..+|...+=+....|.+++.. ..+.
T Consensus 132 ~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls---~~~~~~~r~kaL~AissLIRn~~~g--~~~fl 206 (342)
T KOG2160|consen 132 YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILS---SDDPNTVRTKALFAISSLIRNNKPG--QDEFL 206 (342)
T ss_pred HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHc---cCCCchHHHHHHHHHHHHHhcCcHH--HHHHH
Confidence 6778999999999999999998642 1 1111 1234444443 6778889999999998888888642 1222
Q ss_pred ----HHHHHhhhCCChhHHHHH--HHHHHHHhh
Q 000321 336 ----LTALCDRLLDFDENVRKQ--VVAVICDVA 362 (1670)
Q Consensus 336 ----i~~L~~rL~D~DEkVR~a--aVkai~~la 362 (1670)
+..|.+.|...+..||.. |+--|..+.
T Consensus 207 ~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll 239 (342)
T KOG2160|consen 207 KLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLL 239 (342)
T ss_pred hcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence 357888888865666655 333344433
No 169
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=36.90 E-value=71 Score=44.10 Aligned_cols=15 Identities=20% Similarity=0.029 Sum_probs=8.8
Q ss_pred chhhhHHHHhhccCC
Q 000321 952 PEYIIPYLVHTFAHH 966 (1670)
Q Consensus 952 pEy~LprLIHLLAHH 966 (1670)
-||+|+-+.--=.|.
T Consensus 1214 ~e~iF~~fn~de~hN 1228 (3015)
T KOG0943|consen 1214 EEDIFMGFNCDEGHN 1228 (3015)
T ss_pred hhhhccccccCCCCC
Confidence 466666665555555
No 170
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=35.84 E-value=1.3e+03 Score=32.19 Aligned_cols=39 Identities=23% Similarity=0.238 Sum_probs=25.0
Q ss_pred HHHHHHHh-cchhhhcCCCcchHHHHHHHHHHHHhhcCCC
Q 000321 44 MQPFLNAI-VQPVLLKHQDKDVKLLVATCICEITRITAPE 82 (1670)
Q Consensus 44 l~~~~~~L-v~~~LL~HkD~~Vra~vAcCLadIlRI~APd 82 (1670)
+..++..| +=..||.|.|+.+=-+++.|++-|.-=++|+
T Consensus 330 f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~ 369 (1051)
T KOG0168|consen 330 FHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHG 369 (1051)
T ss_pred chHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccC
Confidence 34444444 3456778888888888888877666555544
No 171
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=35.12 E-value=7.9e+02 Score=28.70 Aligned_cols=71 Identities=23% Similarity=0.247 Sum_probs=48.4
Q ss_pred HHHHHHhhCchhhhhhhhhhcccc-cCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHH
Q 000321 240 VIYDVYRCSPQILSGVVPYLTGEL-LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 317 (1670)
Q Consensus 240 Li~eL~~~~P~lL~~ViP~Le~EL-~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~ 317 (1670)
-+.++-+.-|+-=..+++.|..=| ..+++..+..|++.+.-+.... +-.+..+|+...+++ +-+-|-.+++
T Consensus 107 s~~~ic~~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~----vvd~~s~w~vl~~~l---~~~~rp~v~~ 178 (234)
T PF12530_consen 107 SIRDICCSRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE----VVDFYSAWKVLQKKL---SLDYRPLVLK 178 (234)
T ss_pred HHHHHHHhChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh----hccHHHHHHHHHHhc---CCccchHHHH
Confidence 344455555654444566666666 7899999999999999999443 456677999998888 3344444444
No 172
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=35.11 E-value=1.2e+02 Score=38.14 Aligned_cols=112 Identities=16% Similarity=0.181 Sum_probs=77.5
Q ss_pred hhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHH-HHHHHhhhcCCCh---hHHHHHHHHhHHHHhcCCCC-
Q 000321 255 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSV-FSEFLKRLTDRIV---AVRMSVLEHVKSCLLTDPSR- 329 (1670)
Q Consensus 255 ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~-w~~fL~R~~D~s~---~VR~~~v~~~~~iL~~~p~~- 329 (1670)
.++.+..-|.+++..+|..|-+.+--++++.. +.+..-.+ -..|+-|.-|++- .=|.+.++.+..++.-.-..
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~--~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~ 103 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEE--SLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK 103 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHH--HHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc
Confidence 34444445667789999999999999998763 22222111 2245666665543 34888888888888763211
Q ss_pred CChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCC
Q 000321 330 ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS 368 (1670)
Q Consensus 330 ~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~ 368 (1670)
..-.-++.++....-++||+.|..+++.+|+++..++..
T Consensus 104 ~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~l 142 (371)
T PF14664_consen 104 EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPEL 142 (371)
T ss_pred cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHH
Confidence 122467788888888899999999999999999887664
No 173
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=35.08 E-value=1.1e+02 Score=33.39 Aligned_cols=71 Identities=15% Similarity=0.229 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccH------HHHHHHHhh-ccccchHHHHHHHHHhhcc
Q 000321 595 KEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE------EELVNLLKE-ENEIIKEGILHVLAKAGGT 667 (1670)
Q Consensus 595 ks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v------~~Li~lL~~-~~~~~~~~aLkiLak~~k~ 667 (1670)
+..+..|.+++.. +|..-.-.|+.||..+.+.|...|...+ ++|++++.. ..+.+...+|..+..|+..
T Consensus 36 k~a~ral~KRl~~----~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 36 KDCLKAIMKRLNH----KDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 4555566665532 2223344577888888888888887653 667777776 3445677888888888765
Q ss_pred hh
Q 000321 668 IR 669 (1670)
Q Consensus 668 ~~ 669 (1670)
++
T Consensus 112 f~ 113 (144)
T cd03568 112 FK 113 (144)
T ss_pred hC
Confidence 44
No 174
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.00 E-value=1.1e+02 Score=40.47 Aligned_cols=54 Identities=11% Similarity=0.023 Sum_probs=45.9
Q ss_pred HHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh
Q 000321 312 RMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA 365 (1670)
Q Consensus 312 R~~~v~~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~ 365 (1670)
=..+|+||..++...|+......|+.++-..+.|+..-||...|++|..+....
T Consensus 302 ~~vav~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~D 355 (704)
T KOG2153|consen 302 AQVAVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFEND 355 (704)
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcCC
Confidence 346888998989888887777889999999999999999999999998776533
No 175
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=34.27 E-value=1.3e+03 Score=30.85 Aligned_cols=158 Identities=15% Similarity=0.171 Sum_probs=73.8
Q ss_pred ccccchHHHHHHHHHhhcchhhhhhc---ccchHHHHHHHHhhcC-ChHHHHHHHHHHHhhcC---CCccchHHHHHHHH
Q 000321 649 ENEIIKEGILHVLAKAGGTIREQLAA---TSSSVDLLLERLCLEG-SRRQAKYAVHALAAITK---DDGLKSLSVLYKRL 721 (1670)
Q Consensus 649 ~~~~~~~~aLkiLak~~k~~~e~~~~---~~s~l~~~L~~lal~G-tp~qAKyAvr~Laa~~~---~~~~~~~~~L~~~L 721 (1670)
.++.+.+.+|+.|+.--..++..... ....++..+.+.++.. |..+=...+.+|..+.- .........|++-|
T Consensus 145 ~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii 224 (556)
T PF05918_consen 145 GDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDII 224 (556)
T ss_dssp S-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHH
Confidence 34456677777775333333222211 1122322223344433 45665666666654433 11112234566666
Q ss_pred HHhhh--hc-C-CCchHHHHHHHHHhhccccccc--chHHHHHHHHHhhhccccccCCCCCCCCCCchhhHHHHHHHHHH
Q 000321 722 VDMLE--EK-T-HLPAVLQSLGCIAQTAMPVFET--RESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKT 795 (1670)
Q Consensus 722 ~~~L~--~~-~-~l~t~L~sL~~Iaq~aP~vfe~--~~~eI~~fiik~ILl~~~~~~~~~~~~W~d~se~~~aKi~aLK~ 795 (1670)
.+..+ .. . .-+.++..+-...+.|.+.|.. +++.+++|+.++||.. |.+-.+ ..|+-=||+
T Consensus 225 ~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~-----------l~~l~e--~~kl~lLk~ 291 (556)
T PF05918_consen 225 EEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPK-----------LSDLPE--DRKLDLLKL 291 (556)
T ss_dssp HHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCC-----------TT-------HHHHHHHH
T ss_pred HHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCC-----------hhhCCh--HHHHHHHHH
Confidence 65532 11 1 3345666554445555556654 4788999999999853 322211 236777888
Q ss_pred HHHhhcCCCccccccchHHHHHHH
Q 000321 796 LVKSYLPVKDAHIRPGIDDLLGIL 819 (1670)
Q Consensus 796 Lvn~ll~~~~~~~~~~i~~ll~lL 819 (1670)
|+-.+-.+...+++..+..++.+|
T Consensus 292 lAE~s~~~~~~d~~~~L~~i~~~L 315 (556)
T PF05918_consen 292 LAELSPFCGAQDARQLLPSIFQLL 315 (556)
T ss_dssp HHHHHTT----THHHHHHHHHHHH
T ss_pred HHHHcCCCCcccHHHHHHHHHHHH
Confidence 887776554433444444455554
No 176
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=33.75 E-value=7.8e+02 Score=30.95 Aligned_cols=223 Identities=17% Similarity=0.210 Sum_probs=0.0
Q ss_pred CCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCchHHH
Q 000321 501 DGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDF 580 (1670)
Q Consensus 501 ~~d~~ei~~kl~~~I~~Ls~~FPDp~Ka~~~L~kf~kLnD~RiykLLk~~id~~td~~t~~~a~~ELlkkL~~~~~l~e~ 580 (1670)
+.+++....++.+.|-.+...| ..|=++.+..|.+--=.-+|++|.. ++.+..|..+. +....|
T Consensus 102 d~~e~~~l~kvK~~i~~~~~ly--~~kY~e~f~~~l~~fv~~vw~lL~~-~~~~~~~D~lv-------------~~al~F 165 (370)
T PF08506_consen 102 DDDEPGLLEKVKAWICENLNLY--AEKYEEEFEPFLPTFVQAVWNLLTK-ISQQPKYDILV-------------SKALQF 165 (370)
T ss_dssp -SSS--HHHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHTC---SSGGGHHHH-------------HHHHHH
T ss_pred CcccccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH-hhhcccccHHH-------------HHHHHH
Q ss_pred HHHHHHhhhcc-cc-ChhHHHHHHHHH------------------------HhhcccchhhhHHHHHHHHHHHHhhCCcC
Q 000321 581 LSTLSMKCSYL-LF-NKEHVKEILLEV------------------------AAQKSSANAQFMQSCMDILGILARFSPLL 634 (1670)
Q Consensus 581 l~~Ll~R~S~l-i~-Nks~V~~LL~~v------------------------~~~~~~~~~~~~~~a~eLL~~IS~~~P~l 634 (1670)
+..+..+..+- +| |+.|+..|++.+ ..-..+...+....|.++|..+++.++..
T Consensus 166 L~~v~~~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~ 245 (370)
T PF08506_consen 166 LSSVAESPHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQ 245 (370)
T ss_dssp HHHHHTSHHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcchhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHH
Q ss_pred ccccHHHHHHHHhh-------ccccchHHHHHHHHHhhcchhhhhhcccc-----hHHHHHHHHhh-------cCChHHH
Q 000321 635 LGGTEEELVNLLKE-------ENEIIKEGILHVLAKAGGTIREQLAATSS-----SVDLLLERLCL-------EGSRRQA 695 (1670)
Q Consensus 635 Fk~~v~~Li~lL~~-------~~~~~~~~aLkiLak~~k~~~e~~~~~~s-----~l~~~L~~lal-------~Gtp~qA 695 (1670)
...-+...+..+.. .+...++++|..+..++-.....-.+... .+..-+..... ...|-.-
T Consensus 246 v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLk 325 (370)
T PF08506_consen 246 VTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILK 325 (370)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchH
Q ss_pred HHHHHHHHhhcCCCccchHHHHHHHHHHhhhhcCCCchHHHHHH
Q 000321 696 KYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLG 739 (1670)
Q Consensus 696 KyAvr~Laa~~~~~~~~~~~~L~~~L~~~L~~~~~l~t~L~sL~ 739 (1670)
=.|++.+....+-=....+..++..++.+|.......+..++.+
T Consensus 326 a~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 326 ADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp HHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhh
No 177
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.59 E-value=3.6e+02 Score=34.92 Aligned_cols=179 Identities=13% Similarity=0.086 Sum_probs=0.0
Q ss_pred cccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcC--CCCCChHHHHHHH
Q 000321 262 ELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD--PSRADAPQILTAL 339 (1670)
Q Consensus 262 EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~--p~~~~~~eii~~L 339 (1670)
++.+++.--|..+|++=..|--..+.++.. +-..++.-..--.+.=|+..+-++..+.... +.+..-..+...+
T Consensus 188 ~qls~~~~h~~g~trlqr~m~~~~~~~~~~----il~q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~l 263 (533)
T KOG2032|consen 188 SQLSDNDIHRVGLTRLQRFMACVQDLEMGK----ILAQLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSL 263 (533)
T ss_pred hhcccCcccHHHHHHHHHHHHhhCCccHHH----HHhhcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHH
Q ss_pred HhhhCCChhHHHHHHHHHHHHhhhhhcCCC----CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhccCCCcchh
Q 000321 340 CDRLLDFDENVRKQVVAVICDVACHALNSI----PVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQN 415 (1670)
Q Consensus 340 ~~rL~D~DEkVR~aaVkai~~la~~~l~~V----s~elL~~laeR~RDKK~~VR~eAm~~La~LY~~~~~~~~~~~~~~~ 415 (1670)
..|..||+.++|..|+..++.++...++.| +.-+.-.+....-|=+.+|-.+||.+|..+-... .+.....
T Consensus 264 a~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~-----~~~~l~~ 338 (533)
T KOG2032|consen 264 ANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA-----SNDDLES 338 (533)
T ss_pred HHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh-----hhcchhh
Q ss_pred ccccchHHHhhhhccCCCCchhHHHHhhccCcCC
Q 000321 416 EFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPT 449 (1670)
Q Consensus 416 ~~~wIPs~IL~~~Y~nD~~~~lVE~vL~e~LlP~ 449 (1670)
-|--|--++-..+-..+..-..--.++|+.|.|+
T Consensus 339 ~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l 372 (533)
T KOG2032|consen 339 YLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKL 372 (533)
T ss_pred hchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHH
No 178
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=32.43 E-value=3.3e+02 Score=33.84 Aligned_cols=145 Identities=16% Similarity=0.142 Sum_probs=93.1
Q ss_pred hhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHH
Q 000321 256 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQI 335 (1670)
Q Consensus 256 iP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei 335 (1670)
+|.--....+-+.+.|..|..-|-.+.-..+-+..=.--.-|.--|+=.++.++.||.....-++.|..|||.- ...+
T Consensus 85 ~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~--Qe~v 162 (342)
T KOG2160|consen 85 IPIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKS--QEQV 162 (342)
T ss_pred hhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHH--HHHH
Confidence 45555556677888899999988766544321111111235888888889999999999999999999999842 1233
Q ss_pred HH--H----HHhhhCCChhHHHHHHHHHHHHhhhhhcC------CC-CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000321 336 LT--A----LCDRLLDFDENVRKQVVAVICDVACHALN------SI-PVETVKLVAERLRDKSVLVKRYTMERLADIFRG 402 (1670)
Q Consensus 336 i~--~----L~~rL~D~DEkVR~aaVkai~~la~~~l~------~V-s~elL~~laeR~RDKK~~VR~eAm~~La~LY~~ 402 (1670)
++ + +...-.|.+..||..|.-||+.+.....- .+ ...+|..+.++- +.....++.|+..++.|-..
T Consensus 163 ~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~-~~~~~lkrK~~~Ll~~Ll~~ 241 (342)
T KOG2160|consen 163 IELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSN-NTSVKLKRKALFLLSLLLQE 241 (342)
T ss_pred HHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcC-CcchHHHHHHHHHHHHHHHh
Confidence 32 1 11223799999999999999887653322 12 223444443331 13455666777777776664
Q ss_pred H
Q 000321 403 C 403 (1670)
Q Consensus 403 ~ 403 (1670)
.
T Consensus 242 ~ 242 (342)
T KOG2160|consen 242 D 242 (342)
T ss_pred h
Confidence 3
No 179
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=32.20 E-value=4.4e+02 Score=31.90 Aligned_cols=65 Identities=11% Similarity=0.015 Sum_probs=31.5
Q ss_pred hhhhHHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhcchhhhcCCCcchHHHHHHHHHHHHhh
Q 000321 11 LGNVLHFFLLNLQQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRI 78 (1670)
Q Consensus 11 ~~~~~~~LlkrLk~l~~~Ls~~dQ~~~~~~~~sl~~~~~~Lv~~~LL~HkD~~Vra~vAcCLadIlRI 78 (1670)
+|..+++=+..++++.....+-.++-...+.+.+..++-.|++.- ..+.++..|+-..|.|+++-
T Consensus 23 a~~is~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~---~~~~d~v~yvL~li~dll~~ 87 (312)
T PF03224_consen 23 AGLISEEDLSLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKL---SSNDDTVQYVLTLIDDLLSD 87 (312)
T ss_dssp TTSS-HHHHHHHHHHHHHHH-------------------HHHHHH------HHHHHHHHHHHHHHHH-
T ss_pred hCCCCHHHHHHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHc---cCcHHHHHHHHHHHHHHHhc
Confidence 566677666777777777766533211222334444444444443 56888999999999999984
No 180
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=31.46 E-value=1.1e+03 Score=29.31 Aligned_cols=167 Identities=13% Similarity=0.193 Sum_probs=89.6
Q ss_pred HhhcCCCCCCCCcchHHHHHHHHHhh-CchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCC-CCC------chhhc
Q 000321 222 SSMSGDSRPGHSHIDYHEVIYDVYRC-SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP-GSA------NNEQF 293 (1670)
Q Consensus 222 ~il~~~~~~~~~~~~~h~Li~eL~~~-~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~-~~~------~~~~y 293 (1670)
.++.|++.........+.|..|+++. .-.+|...+|.|+. +.|..++..++-++... +.. +...|
T Consensus 50 ~IL~G~~e~ep~~e~v~qLa~Ei~~~dll~~Li~~L~~L~f-------EsrKdv~~if~~llr~~~~~~~~p~v~yl~~~ 122 (335)
T PF08569_consen 50 EILYGDGEPEPNPEQVAQLAQEIYRSDLLYLLIRNLPKLDF-------ESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH 122 (335)
T ss_dssp HHHHS-SS----HHHHHHHHHHHHHHTHHHHHHHTGGGS-H-------HHHHHHHHHHHHHHT--BTTB--HHHHHHHT-
T ss_pred HHhcCCCCCCCCHHHHHHHHHHHHHhCHHHHHHHHhhhCCC-------cccccHHHHHHHHHhhccCCCCCchHHHHHhC
Confidence 46777654444444578888898877 23344455666655 48999999999998763 222 34567
Q ss_pred -HHHHHHHHhhhcCCChhHHHHHH-------HHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh
Q 000321 294 -HSVFSEFLKRLTDRIVAVRMSVL-------EHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA 365 (1670)
Q Consensus 294 -~~~w~~fL~R~~D~s~~VR~~~v-------~~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~ 365 (1670)
|++...++.-..+.+..+=+..+ +.+..+++.++ ...-+.+-..-+.=.|=..|..++.++-..+
T Consensus 123 ~peil~~L~~gy~~~dial~~g~mlRec~k~e~l~~~iL~~~-------~f~~ff~~~~~~~Fdiasdaf~t~~~llt~h 195 (335)
T PF08569_consen 123 RPEILDILLRGYENPDIALNCGDMLRECIKHESLAKIILYSE-------CFWKFFKYVQLPNFDIASDAFSTFKELLTRH 195 (335)
T ss_dssp -THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHHHHHHHTSG-------GGGGHHHHTTSSSHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHhcCccccchHHHHHHHHHhhHHHHHHHhCcH-------HHHHHHHHhcCCccHhHHHHHHHHHHHHhcc
Confidence 88888888777765543322211 00111111111 1112333444455555555555555544332
Q ss_pred cCCCCH-------HHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000321 366 LNSIPV-------ETVKLVAERLRDKSVLVKRYTMERLADIFRG 402 (1670)
Q Consensus 366 l~~Vs~-------elL~~laeR~RDKK~~VR~eAm~~La~LY~~ 402 (1670)
-..+.. ..+......+.-.+.-.|+.++..||.|.-.
T Consensus 196 k~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellld 239 (335)
T PF08569_consen 196 KKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLD 239 (335)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHc
Confidence 222211 2344566667777788888888888888764
No 181
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=31.35 E-value=3.4e+02 Score=33.57 Aligned_cols=137 Identities=20% Similarity=0.297 Sum_probs=0.0
Q ss_pred hhhhcccccCCChHHHHHHHHHHHHhhcCCCCC-----chhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcC-CCC
Q 000321 256 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA-----NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD-PSR 329 (1670)
Q Consensus 256 iP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~-----~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~-p~~ 329 (1670)
+|+|...|-++|.+.-+.||--+-.++|...+. +..---+-|.+|+. ++--.|+++-..-.++| .+.
T Consensus 73 lp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~-------~~q~~mlqfEAaWalTNiaSG 145 (526)
T COG5064 73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMD-------EIQRDMLQFEAAWALTNIASG 145 (526)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHH-------hcchhHHHHHHHHHHhhhccC
Q ss_pred CChH-------HHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcC---------------------CCCHHHHH----HH
Q 000321 330 ADAP-------QILTALCDRLLDFDENVRKQVVAVICDVACHALN---------------------SIPVETVK----LV 377 (1670)
Q Consensus 330 ~~~~-------eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~---------------------~Vs~elL~----~l 377 (1670)
.-.+ .-+..+...|.++...||-++|=+++.+|-.+.. .+..++++ +|
T Consensus 146 tt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtL 225 (526)
T COG5064 146 TTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTL 225 (526)
T ss_pred cccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHH
Q ss_pred HHhhccCCh----hHHHHHHHHHHHH
Q 000321 378 AERLRDKSV----LVKRYTMERLADI 399 (1670)
Q Consensus 378 aeR~RDKK~----~VR~eAm~~La~L 399 (1670)
...+|-|++ .+=..|+..|++|
T Consensus 226 SNlcRGknP~P~w~~isqalpiL~KL 251 (526)
T COG5064 226 SNLCRGKNPPPDWSNISQALPILAKL 251 (526)
T ss_pred HHhhCCCCCCCchHHHHHHHHHHHHH
No 182
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=31.30 E-value=7.7e+02 Score=32.74 Aligned_cols=123 Identities=8% Similarity=0.143 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHhhhccCCCcchhccccchHHHhhhhccCCCC------chhHHHHhhccCcCCCCCHHHHHHHHHHHH
Q 000321 391 YTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFG------SDTIESVLCGSLFPTGFSVKDRVRHWVRIF 464 (1670)
Q Consensus 391 eAm~~La~LY~~~~~~~~~~~~~~~~~~wIPs~IL~~~Y~nD~~------~~lVE~vL~e~LlP~~~~~~~R~~~ll~l~ 464 (1670)
+|--.+...|+.+..- .+ -..|+.-||.+.+. ...++.|+.+ .++.|.-.+-++.
T Consensus 246 eaa~Vve~ay~~~A~l-------~Q-----r~~li~EfYG~efqlfK~sn~~Tl~kil~~-------~pekk~~I~~~l~ 306 (652)
T KOG2050|consen 246 EAAYVVEYAYNDFATL-------EQ-----RQYLIQEFYGDEFQLFKDSNDKTLDKILAE-------APEKKASILRHLK 306 (652)
T ss_pred HHHHHHHHHHHhhccH-------HH-----HHHHHHHHhhHHHHHHhccCcccHHHHHHh-------ChHhHHHHHHHHH
Confidence 4555666677765321 11 12234445544332 2268888664 5567777777777
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHh--hcCCchHHHHHHHHHHhhccHH
Q 000321 465 SGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSR--SFAEPAKAEENFLILDQLKDAN 542 (1670)
Q Consensus 465 ~~LD~~~~kal~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kl~~~I~~Ls~--~FPDp~Ka~~~L~kf~kLnD~R 542 (1670)
..+++..-+....+ +-+-.+|..||..|. +.+...-|+-+...+.. +-||..++.=.+-.++..+|++
T Consensus 307 ~~I~~v~eKg~v~~----tivHk~mlEy~~~ad------e~e~~e~l~ll~elv~e~vHT~dGS~vAm~li~~a~aKeRK 376 (652)
T KOG2050|consen 307 AIITPVAEKGSVDH----TIVHKLMLEYLTIAD------EEEKSELLELLKELVPEMVHTRDGSRVAMKLIWHATAKERK 376 (652)
T ss_pred HHhHHHhhcchhHH----HHHHHHHHHHHHhCC------HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhCCHHHHH
Confidence 77777655544332 446778999998763 33444444433344443 3366666533333344456664
No 183
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.13 E-value=6.6e+02 Score=31.53 Aligned_cols=146 Identities=15% Similarity=0.174 Sum_probs=106.8
Q ss_pred hhhhhhhcccccCCChHHHHHHHHHHHHhhcCCC--CCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCC
Q 000321 253 SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG--SANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRA 330 (1670)
Q Consensus 253 ~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~--~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~ 330 (1670)
.+-+|.|-.-|.+.|.++|--+|..+|.+--... --++++-|-+-.+...=..|-++.|.++..-+... |.+.. +
T Consensus 207 aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrn-lasdt--~ 283 (550)
T KOG4224|consen 207 AGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRN-LASDT--E 283 (550)
T ss_pred cCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhh-hcccc--h
Confidence 3578888899999999999999999997654421 23678888899999999999999998877666543 33221 2
Q ss_pred ChHHHH-----HHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCH---HHHHHHHHhhccCChh-HHHHHHHHHHHHHH
Q 000321 331 DAPQIL-----TALCDRLLDFDENVRKQVVAVICDVACHALNSIPV---ETVKLVAERLRDKSVL-VKRYTMERLADIFR 401 (1670)
Q Consensus 331 ~~~eii-----~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~Vs~---elL~~laeR~RDKK~~-VR~eAm~~La~LY~ 401 (1670)
-..+|+ ..+-+.|.|+--..=++.|..|..++.+.++.++. -+|+-|...+|=+... +...|...|-+|-.
T Consensus 284 Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAa 363 (550)
T KOG4224|consen 284 YQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAA 363 (550)
T ss_pred hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhh
Confidence 223444 46777788888888889999998899888876643 4666666666666554 78888777666544
No 184
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=30.99 E-value=85 Score=40.60 Aligned_cols=62 Identities=18% Similarity=0.223 Sum_probs=39.4
Q ss_pred hcCCChhHHHHHHHHhHHHHhcCCCCCChHHHH-HHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCC
Q 000321 304 LTDRIVAVRMSVLEHVKSCLLTDPSRADAPQIL-TALCDRLLDFDENVRKQVVAVICDVACHALNSI 369 (1670)
Q Consensus 304 ~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~eii-~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~V 369 (1670)
.+|+++-.|..=+-...-...-. .+ .-++ .-|.--..|.++.||+|||-+++-+.|...+.+
T Consensus 525 l~d~ds~lRy~G~fs~alAy~GT-gn---~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~~l 587 (926)
T COG5116 525 LYDKDSILRYNGVFSLALAYVGT-GN---LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRDLL 587 (926)
T ss_pred hcCchHHhhhccHHHHHHHHhcC-Cc---chhHhhhheeecccCchHHHHHHHHheeeeEecCcchh
Confidence 36888888876444333222211 11 1244 344445899999999999999988777766654
No 185
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=30.96 E-value=9.1e+02 Score=33.46 Aligned_cols=183 Identities=14% Similarity=0.065 Sum_probs=103.2
Q ss_pred HHhhhccccChhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcC-cc-ccHHHHHHHHhhccccchHHHHHHHH
Q 000321 585 SMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLL-LG-GTEEELVNLLKEENEIIKEGILHVLA 662 (1670)
Q Consensus 585 l~R~S~li~Nks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~l-Fk-~~v~~Li~lL~~~~~~~~~~aLkiLa 662 (1670)
+-|++-+.+.--.||.|+.++..- +-...++-+++-|..||+.+|.- ++ +.+...+.+|.-=...+-..||-|.+
T Consensus 243 lP~S~a~vV~~~aIPvl~~kL~~I---eyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~Alaiaa 319 (1051)
T KOG0168|consen 243 LPRSSAIVVDEHAIPVLLEKLLTI---EYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAA 319 (1051)
T ss_pred ccchhheeecccchHHHHHhhhhh---hhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447777777777888888876431 11124566788899999999853 32 22222222222111113456888888
Q ss_pred HhhcchhhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCcc-------chHHHHHHHHHHhhhhc--C-CCc
Q 000321 663 KAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGL-------KSLSVLYKRLVDMLEEK--T-HLP 732 (1670)
Q Consensus 663 k~~k~~~e~~~~~~s~l~~~L~~lal~Gtp~qAKyAvr~Laa~~~~~~~-------~~~~~L~~~L~~~L~~~--~-~l~ 732 (1670)
++.+.++..-+..--...+.|..+-.+-+.+-.-++.-|++.+...... .+-.+|++++..-|.-. . ..+
T Consensus 320 N~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~ 399 (1051)
T KOG0168|consen 320 NCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNG 399 (1051)
T ss_pred HHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCccccccc
Confidence 8888765432211123466777777777777777888888777654321 11134455555444311 1 222
Q ss_pred hHHHH---HHHHHhhcccccccchHHHHHHHHHhhhccccc
Q 000321 733 AVLQS---LGCIAQTAMPVFETRESEIEEFIKSKILRCSNK 770 (1670)
Q Consensus 733 t~L~s---L~~Iaq~aP~vfe~~~~eI~~fiik~ILl~~~~ 770 (1670)
++... |..++--+|..|.+....=+..+++.||.....
T Consensus 400 ~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~ 440 (1051)
T KOG0168|consen 400 TYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSK 440 (1051)
T ss_pred chhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCc
Confidence 32233 333333368888876544445567888887655
No 186
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=30.92 E-value=1.7e+02 Score=35.98 Aligned_cols=78 Identities=15% Similarity=0.189 Sum_probs=50.1
Q ss_pred hhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhc-------HHHHHHHHhhhc-CCC---------hhHH
Q 000321 250 QILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQF-------HSVFSEFLKRLT-DRI---------VAVR 312 (1670)
Q Consensus 250 ~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y-------~~~w~~fL~R~~-D~s---------~~VR 312 (1670)
.+|.+=+..|+..|.+....+...|.++|..|.+-.|..+++.. ...+..++.+.. +.. +.||
T Consensus 52 ~iL~~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR 131 (330)
T PF11707_consen 52 SILQNHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIR 131 (330)
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHH
Confidence 44555566777778888888888888888888883332333211 223444443322 222 3999
Q ss_pred HHHHHHhHHHHhcCC
Q 000321 313 MSVLEHVKSCLLTDP 327 (1670)
Q Consensus 313 ~~~v~~~~~iL~~~p 327 (1670)
..+|+++-.+|...+
T Consensus 132 ~~fI~F~Lsfl~~~~ 146 (330)
T PF11707_consen 132 TNFIRFWLSFLSSGD 146 (330)
T ss_pred HHHHHHHHHHHccCC
Confidence 999999999887653
No 187
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=30.14 E-value=97 Score=28.89 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=29.2
Q ss_pred HHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHH
Q 000321 314 SVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQ 353 (1670)
Q Consensus 314 ~~v~~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~a 353 (1670)
.+|+.++.|.-.|+ ..+|...|.+|-+||||.|-.-
T Consensus 7 k~VQ~iKEiv~~hs----e~eIya~L~ecnMDpnea~qrL 42 (60)
T PF06972_consen 7 KTVQSIKEIVGCHS----EEEIYAMLKECNMDPNEAVQRL 42 (60)
T ss_pred HHHHHHHHHhcCCC----HHHHHHHHHHhCCCHHHHHHHH
Confidence 57888998887754 2489999999999999987553
No 188
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=30.00 E-value=1.1e+03 Score=28.68 Aligned_cols=147 Identities=24% Similarity=0.279 Sum_probs=78.3
Q ss_pred HHHHHHHHHhhCchhhhhhhhhhccccc--CCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhc-CCChhHHH
Q 000321 237 YHEVIYDVYRCSPQILSGVVPYLTGELL--TDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLT-DRIVAVRM 313 (1670)
Q Consensus 237 ~h~Li~eL~~~~P~lL~~ViP~Le~EL~--sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~-D~s~~VR~ 313 (1670)
.|++.|-|-+-.= ...+|.|..-|. +.++-+|..|-+.||.++ .+. -..+|.|.. |...+||-
T Consensus 53 khe~ay~LgQ~~~---~~Av~~l~~vl~desq~pmvRhEAaealga~~-~~~----------~~~~l~k~~~dp~~~v~E 118 (289)
T KOG0567|consen 53 KHELAYVLGQMQD---EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DPE----------SLEILTKYIKDPCKEVRE 118 (289)
T ss_pred ccchhhhhhhhcc---chhhHHHHHHhcccccchHHHHHHHHHHHhhc-chh----------hHHHHHHHhcCCccccch
Confidence 4666665544311 122333333333 457899999999999888 543 234555555 66666655
Q ss_pred HHHHHhHHH---------Hhc------CCCCC-Ch--------------------------------HHHHHHHHhhhCC
Q 000321 314 SVLEHVKSC---------LLT------DPSRA-DA--------------------------------PQILTALCDRLLD 345 (1670)
Q Consensus 314 ~~v~~~~~i---------L~~------~p~~~-~~--------------------------------~eii~~L~~rL~D 345 (1670)
.|-.+++++ ..+ +|... .. .+-+.+|.+-|.|
T Consensus 119 Tc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~ 198 (289)
T KOG0567|consen 119 TCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLAD 198 (289)
T ss_pred HHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhccc
Confidence 433333321 111 12111 00 1223333344444
Q ss_pred ChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCC--hhHHHHHHHHHHHHHHHHh
Q 000321 346 FDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKS--VLVKRYTMERLADIFRGCC 404 (1670)
Q Consensus 346 ~DEkVR~aaVkai~~la~~~l~~Vs~elL~~laeR~RDKK--~~VR~eAm~~La~LY~~~~ 404 (1670)
.-.-.|..|--+++++ -+...+-.|.+.++|.+ +=||.+|.+.||.+=...|
T Consensus 199 ~SalfrhEvAfVfGQl-------~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~~ 252 (289)
T KOG0567|consen 199 DSALFRHEVAFVFGQL-------QSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADEDC 252 (289)
T ss_pred chHHHHHHHHHHHhhc-------cchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHHH
Confidence 4444444433333332 13334567778888887 6799999999998876554
No 189
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.86 E-value=2.1e+03 Score=32.14 Aligned_cols=258 Identities=14% Similarity=0.185 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHhcCCCcH------HHHHHHH-HHHHHh--
Q 000321 138 ELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKND------TARRLAM-NVIEQC-- 208 (1670)
Q Consensus 138 ~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vIeEse~vp~~vLd~IL~~l~~~~~~------~a~~lA~-~v~~~~-- 208 (1670)
.||..||+.=||- ..+|...|.+|=..+|.++..+-.+-+..||..|..+-+. .|--+|. ++++.-
T Consensus 998 kLIPrLyRY~yDP-----~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~ 1072 (1702)
T KOG0915|consen 998 KLIPRLYRYQYDP-----DKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPF 1072 (1702)
T ss_pred HhhHHHhhhccCC-----cHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCCh
Confidence 6888888877762 3589999999999999998777666666666655433221 3332332 222211
Q ss_pred ---hhhhHHHHHHHHHHhhcCCCCCCCCcchHHH-------HHHHHHhh-----Cchhhhhhhhhhccc-ccCCChHHHH
Q 000321 209 ---AGKLEAGIKQFLVSSMSGDSRPGHSHIDYHE-------VIYDVYRC-----SPQILSGVVPYLTGE-LLTDQLDTRL 272 (1670)
Q Consensus 209 ---~dkL~~~I~qyf~~il~~~~~~~~~~~~~h~-------Li~eL~~~-----~P~lL~~ViP~Le~E-L~sed~~~Rl 272 (1670)
.++|--...+.|.-+ |+.-..-..-+|. |+..+.-. +-+.+.+++|+|=++ ..+.-.++|.
T Consensus 1073 ~~~~e~lpelw~~~fRvm---DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~ 1149 (1702)
T KOG0915|consen 1073 DQVKEKLPELWEAAFRVM---DDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRR 1149 (1702)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHH
Confidence 122222222222211 1000000000111 12111111 335677888887443 4488899999
Q ss_pred HHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHh----HHHHhcC-CCCCChHHHHHHHHhhhCCCh
Q 000321 273 KAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHV----KSCLLTD-PSRADAPQILTALCDRLLDFD 347 (1670)
Q Consensus 273 ~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~----~~iL~~~-p~~~~~~eii~~L~~rL~D~D 347 (1670)
.+..||-+|....|..+.-..|.+--.|+.-+.-.+|.|=--..-.+ ...+-+- .+..-.+-+++.+.+++.-.|
T Consensus 1150 ~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD 1229 (1702)
T KOG0915|consen 1150 FSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYID 1229 (1702)
T ss_pred HHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhh
Confidence 99999999998877776666777777777777777776522211111 1111100 000001124555556666666
Q ss_pred hHHHHHHHHHHHHh--------------------hhhhcCC---CCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHH
Q 000321 348 ENVRKQVVAVICDV--------------------ACHALNS---IPVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 403 (1670)
Q Consensus 348 EkVR~aaVkai~~l--------------------a~~~l~~---Vs~elL~~laeR~RDKK~~VR~eAm~~La~LY~~~ 403 (1670)
..|=-+.+-.++++ +..-... .+..+|+.+.-=.+||+..||+..-.++|.|.+..
T Consensus 1230 ~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~S 1308 (1702)
T KOG0915|consen 1230 ISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFS 1308 (1702)
T ss_pred HHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcC
Confidence 55554444444443 3322222 24568999999999999999999999999998864
No 190
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=29.56 E-value=9.8e+02 Score=33.28 Aligned_cols=132 Identities=15% Similarity=0.263 Sum_probs=75.6
Q ss_pred HhHHHHHHHhcchhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhccCCCCC--CCCChhhHHHHH
Q 000321 42 EAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDT--GGPSFGRRVVIL 119 (1670)
Q Consensus 42 ~sl~~~~~~Lv~~~LL~HkD~~Vra~vAcCLadIlRI~APdaPytd~~LkdIF~lfi~qf~~L~d~--~~p~f~q~~~LL 119 (1670)
++..++...|.+.. =.-.|.++.-..|.|+++- .-|..++.+ +..+.+. +......-..||
T Consensus 84 eAtE~~v~~l~~~~-~~~~d~e~~~~~~~v~~~~------------gGL~~ll~~----l~~~~~~~~~~~ll~~llkLL 146 (802)
T PF13764_consen 84 EATEEFVESLEDDS-EEEEDPEQEFKIASVLAEC------------GGLEVLLSR----LDSIRDFSRGRELLQVLLKLL 146 (802)
T ss_pred ccchhhHhhccCcc-ccccCHHHHHHHHHHhhcC------------CCHHHHHHH----HHhhccccCcHHHHHHHHHHH
Confidence 55667777775542 1124555666666665431 112222222 2222222 223455556777
Q ss_pred HHHHhhhhhe-eeccCCchHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHhccccc--c---------------cHHH
Q 000321 120 ETLAKYRSCV-VMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESED--I---------------QEDL 181 (1670)
Q Consensus 120 e~La~vks~v-l~~DL~~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vIeEse~--v---------------p~~v 181 (1670)
.....|+.+- .++.+.+-+.+...++.+|..-.+.....+..-+..||..++.|... + ..+.
T Consensus 147 ~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~ 226 (802)
T PF13764_consen 147 RYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQ 226 (802)
T ss_pred HHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHH
Confidence 7777776665 44556666777778888887544334456666677777777777543 2 4566
Q ss_pred HHHHHHHhc
Q 000321 182 LVILLSALG 190 (1670)
Q Consensus 182 Ld~IL~~l~ 190 (1670)
++.+|+++.
T Consensus 227 v~~lL~~l~ 235 (802)
T PF13764_consen 227 VEMLLERLN 235 (802)
T ss_pred HHHHHHHhc
Confidence 888888885
No 191
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=29.14 E-value=85 Score=26.16 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=25.3
Q ss_pred HHHHHHHhhhCCChhHHHHHHHHHHHHhh
Q 000321 334 QILTALCDRLLDFDENVRKQVVAVICDVA 362 (1670)
Q Consensus 334 eii~~L~~rL~D~DEkVR~aaVkai~~la 362 (1670)
..++.|...|.+.|..||.+|+-+++.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 36788889999999999999999998765
No 192
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=28.94 E-value=5.6e+02 Score=34.58 Aligned_cols=148 Identities=15% Similarity=0.132 Sum_probs=96.4
Q ss_pred CchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCC
Q 000321 248 SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDP 327 (1670)
Q Consensus 248 ~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p 327 (1670)
.++.-..++|.|-.-+.+-|..+|+.-.+-+-+.+..-. =-.....+|-.+..=|+|.++.+|..-|.+...+.-.-.
T Consensus 324 ~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt--~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~ 401 (690)
T KOG1243|consen 324 EEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLT--KQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS 401 (690)
T ss_pred ccccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcC--HHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc
Confidence 444667788999888999999999887666554443211 112345688889999999999999999988865443222
Q ss_pred CCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHh-hccCChhHHHHHHHHHH
Q 000321 328 SRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAER-LRDKSVLVKRYTMERLA 397 (1670)
Q Consensus 328 ~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~Vs~elL~~laeR-~RDKK~~VR~eAm~~La 397 (1670)
.+..-.|++++|.+.-.|.+-.+|..++..++.++...--.+-..+|-.---| +||-=..=|..++..|+
T Consensus 402 ~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~ 472 (690)
T KOG1243|consen 402 KRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALA 472 (690)
T ss_pred hhhhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHh
Confidence 23345689999999888999999998877777766542111111122222223 55555555555554443
No 193
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=28.56 E-value=3.3e+02 Score=36.29 Aligned_cols=173 Identities=13% Similarity=0.079 Sum_probs=103.6
Q ss_pred hhcccccCCChHHHHHHHHHHHHhhcC---CCCCchhhcHHHHH---HHHhhhcCCChhHHHHHHHHhHH------HHhc
Q 000321 258 YLTGELLTDQLDTRLKAVGLVGDLFAV---PGSANNEQFHSVFS---EFLKRLTDRIVAVRMSVLEHVKS------CLLT 325 (1670)
Q Consensus 258 ~Le~EL~sed~~~Rl~At~llG~mfs~---~~~~~~~~y~~~w~---~fL~R~~D~s~~VR~~~v~~~~~------iL~~ 325 (1670)
....+|.+-.+..|..+..-.--|--. .+....++.-.++. .++. .-=++..+|.+|+.+.+. +|.+
T Consensus 335 f~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~-~~~kd~~~~aaa~l~~~s~srsV~aL~t 413 (678)
T KOG1293|consen 335 FICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCL-PPIKDHDFVAAALLCLKSFSRSVSALRT 413 (678)
T ss_pred HHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccc-cccccHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345667777888887765432211110 01122233333332 2221 122467788888877654 4555
Q ss_pred CCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCH-----HHHHHHHHhhccCChhHHHHHHHHHHHHH
Q 000321 326 DPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV-----ETVKLVAERLRDKSVLVKRYTMERLADIF 400 (1670)
Q Consensus 326 ~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~Vs~-----elL~~laeR~RDKK~~VR~eAm~~La~LY 400 (1670)
-+.+. ++..-|-.-|+||+-.|-..+.-+||.+.. .|...-. ..+..|..-+.|+-+.+|+.+...| |
T Consensus 414 g~~~~---dv~~plvqll~dp~~~i~~~~lgai~NlVm-efs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~L---r 486 (678)
T KOG1293|consen 414 GLKRN---DVAQPLVQLLMDPEIMIMGITLGAICNLVM-EFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVL---R 486 (678)
T ss_pred CCccc---hhHHHHHHHhhCcchhHHHHHHHHHHHHHh-hcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHH---H
Confidence 55443 688888888999999999999999998754 2222222 2356888999999999998776665 4
Q ss_pred HHHhhhccCCCcchhccccchHHHhhhhccCCCCchhHHHH
Q 000321 401 RGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESV 441 (1670)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~wIPs~IL~~~Y~nD~~~~lVE~v 441 (1670)
+..+.. +...-.+-+.-||...+.+ |+||++....|+.
T Consensus 487 ~l~f~~--de~~k~~~~~ki~a~~i~~-l~nd~d~~Vqeq~ 524 (678)
T KOG1293|consen 487 HLMFNC--DEEEKFQLLAKIPANLILD-LINDPDWAVQEQC 524 (678)
T ss_pred HHHhcc--hHHHHHHHHHHhhHHHHHH-HHhCCCHHHHHHH
Confidence 433321 0001123467889888876 5888764444444
No 194
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=28.18 E-value=4.3e+02 Score=29.75 Aligned_cols=66 Identities=14% Similarity=0.176 Sum_probs=55.1
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHHhHHHHhc---CCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh
Q 000321 295 SVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT---DPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA 365 (1670)
Q Consensus 295 ~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~---~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~ 365 (1670)
..|...|.-+.+.+..||...++.+.-++.- || .+.+..|....-|++..||..|.....++....
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 3577888888999999999999999988864 55 378899999999999999999888887765433
No 195
>PF02237 BPL_C: Biotin protein ligase C terminal domain; InterPro: IPR003142 This C-terminal domain has an SH3-like barrel fold, the function of which is unknown. It is found associated with prokaryotic bifunctional transcriptional repressors [] and eukaryotic enzymes involved in biotin utilization [, ]. In Escherichia coli the biotin operon repressor (BirA) is a bifunctional protein. BirA acts both as the acetyl-coA carboxylase biotin holoenzyme synthetase (6.3.4.15 from EC) and as the biotin operon repressor. DNA sequence analysis of mutations indicates that the helix-turn-helix DNA binding region is located at the N terminus while mutations affecting enzyme function, although mapping over a large region, are found mainly in the central part of the protein's primary sequence [].; GO: 0006464 protein modification process; PDB: 3RUX_A 2CGH_A 3L1A_B 3L2Z_A 1HXD_A 1BIB_A 2EWN_B 1BIA_A 2EJ9_A 3FJP_A ....
Probab=28.11 E-value=1.4e+02 Score=26.24 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=31.2
Q ss_pred ccceEEEecCCCCceEEEEEEEecCCCCeeEEEccCCcceee
Q 000321 1372 IGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVL 1413 (1670)
Q Consensus 1372 vG~rv~V~Wp~D~~~Y~G~V~~y~~~~~~H~v~YdDGd~E~l 1413 (1670)
+|++|+|..+ +..|.|.+.+.|+. +.=.|+.+||..+.+
T Consensus 2 lG~~V~v~~~--~~~~~G~~~gId~~-G~L~v~~~~g~~~~i 40 (48)
T PF02237_consen 2 LGQEVRVETG--DGEIEGIAEGIDDD-GALLVRTEDGSIRTI 40 (48)
T ss_dssp TTSEEEEEET--SCEEEEEEEEEETT-SEEEEEETTEEEEEE
T ss_pred CCCEEEEEEC--CeEEEEEEEEECCC-CEEEEEECCCCEEEE
Confidence 6999999993 44779999999876 778888888865544
No 196
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=27.60 E-value=9.6e+02 Score=30.21 Aligned_cols=198 Identities=16% Similarity=0.175 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHhhhhhHHHHH----HHHHHhhcCCCCCCCCcchHHHHHHHHHhh-------Cchhhhhhhhhhccccc
Q 000321 196 TARRLAMNVIEQCAGKLEAGIK----QFLVSSMSGDSRPGHSHIDYHEVIYDVYRC-------SPQILSGVVPYLTGELL 264 (1670)
Q Consensus 196 ~a~~lA~~v~~~~~dkL~~~I~----qyf~~il~~~~~~~~~~~~~h~Li~eL~~~-------~P~lL~~ViP~Le~EL~ 264 (1670)
+||++.+-+|.... -++..++ -|+.-.+..+....-+...+..+|+.+..+ ...++..++--.|+
T Consensus 44 a~yRilRy~i~d~~-~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~--- 119 (371)
T PF14664_consen 44 AGYRILRYLISDEE-SLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEH--- 119 (371)
T ss_pred HHHHHHHHHHcCHH-HHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhC---
Confidence 77888887776542 2222221 122222222222222233577888888877 34556666666665
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCC-------CChHHHHH
Q 000321 265 TDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR-------ADAPQILT 337 (1670)
Q Consensus 265 sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~-------~~~~eii~ 337 (1670)
.+...|..|.+||.++.-... .++ .+-.-+...+.-..|-..++=-.++...-++| ++|.. -+...++.
T Consensus 120 -~~D~lr~~cletL~El~l~~P-~lv-~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lL-d~p~tR~yl~~~~dL~~l~a 195 (371)
T PF14664_consen 120 -EDDRLRRICLETLCELALLNP-ELV-AECGGIRVLLRALIDGSFSISESLLDTLLYLL-DSPRTRKYLRPGFDLESLLA 195 (371)
T ss_pred -CchHHHHHHHHHHHHHHhhCH-HHH-HHcCCHHHHHHHHHhccHhHHHHHHHHHHHHh-CCcchhhhhcCCccHHHHHH
Confidence 888999999999999875422 111 11112334444455544455455555555544 44431 22334555
Q ss_pred HHHhh----hCCCh--hHHHHHHHHHHHHhhh-----hhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000321 338 ALCDR----LLDFD--ENVRKQVVAVICDVAC-----HALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 402 (1670)
Q Consensus 338 ~L~~r----L~D~D--EkVR~aaVkai~~la~-----~~l~~Vs~elL~~laeR~RDKK~~VR~eAm~~La~LY~~ 402 (1670)
.+.+- ..+.. ++.+ ++.++|..+-. ..+..-+..-++.+.+=++=..+.||+.-+..|-.+++.
T Consensus 196 pftd~~~~~~~~~~~~~~l~-~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllri 270 (371)
T PF14664_consen 196 PFTDFHYRKIKDDRELERLQ-ASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRI 270 (371)
T ss_pred hhhhhhccccccchHHHHHH-HHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCC
Confidence 55554 22222 2222 23333433322 112222336788888888888889999999999999984
No 197
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=27.39 E-value=2.5e+02 Score=32.97 Aligned_cols=97 Identities=15% Similarity=0.231 Sum_probs=61.7
Q ss_pred CChHHHHHHHHHHHHhhcCC-CCCchhhcHH-HHHHHHhhhcCC----ChhHHHHHHHHhHHHHh---cCC-CCCChHHH
Q 000321 266 DQLDTRLKAVGLVGDLFAVP-GSANNEQFHS-VFSEFLKRLTDR----IVAVRMSVLEHVKSCLL---TDP-SRADAPQI 335 (1670)
Q Consensus 266 ed~~~Rl~At~llG~mfs~~-~~~~~~~y~~-~w~~fL~R~~D~----s~~VR~~~v~~~~~iL~---~~p-~~~~~~ei 335 (1670)
.....++.+.+++..||+.+ +....-.|.. ..-.-+...... ...+|+++...+-++-. .++ ..+...++
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~l 201 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSEL 201 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 78999999999999999975 4445556665 444444444443 68899999888776422 223 22333456
Q ss_pred HHHHHhhhC-C-ChhHHHHHHHHHHHHhh
Q 000321 336 LTALCDRLL-D-FDENVRKQVVAVICDVA 362 (1670)
Q Consensus 336 i~~L~~rL~-D-~DEkVR~aaVkai~~la 362 (1670)
+..+.+-+. . .|+.+....+.+++.+.
T Consensus 202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~ 230 (268)
T PF08324_consen 202 LSSIIEVLSREESDEEALYRLLVALGTLL 230 (268)
T ss_dssp HHHHHHHCHCCHTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHh
Confidence 666666332 2 45666666667777766
No 198
>PF08605 Rad9_Rad53_bind: Fungal Rad9-like Rad53-binding; InterPro: IPR013914 In Saccharomyces cerevisiae (Baker s yeast), the Rad9 is a key adaptor protein in DNA damage checkpoint pathways. DNA damage induces Rad9 phosphorylation, and Rad53 specifically associates with this region of Rad9, when phosphorylated, via the Rad53 IPR000253 from INTERPRO domain []. There is no clear higher eukaryotic ortholog to Rad9.
Probab=27.32 E-value=1e+02 Score=33.05 Aligned_cols=49 Identities=16% Similarity=0.258 Sum_probs=41.4
Q ss_pred CCceEEEEEEEecCCCCeeEEEccCCcceeeecCcceEEEecCCCCCCcccc
Q 000321 1383 DKQFYEGTIKSYDPIKKKHVILYDDEDVEVLRLDKERWELLDNGRKPTKKSK 1434 (1670)
Q Consensus 1383 D~~~Y~G~V~~y~~~~~~H~v~YdDGd~E~l~L~~e~~~~~~~~~~~~~~~~ 1434 (1670)
+..||.|++.+.+....+..|+++||. ..+.++.++.++-...+..+-+
T Consensus 21 ~~~yYPa~~~~~~~~~~~~~V~Fedg~---~~i~~~dv~~LDlRIGD~Vkv~ 69 (131)
T PF08605_consen 21 NLKYYPATCVGSGVDRDRSLVRFEDGT---YEIKNEDVKYLDLRIGDTVKVD 69 (131)
T ss_pred CCeEeeEEEEeecCCCCeEEEEEecCc---eEeCcccEeeeeeecCCEEEEC
Confidence 789999999999887778999999999 4456777888888888877666
No 199
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=27.07 E-value=2.2e+03 Score=31.29 Aligned_cols=126 Identities=10% Similarity=0.034 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCC-CChHHHHHHHHhhhCCCh
Q 000321 269 DTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR-ADAPQILTALCDRLLDFD 347 (1670)
Q Consensus 269 ~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~-~~~~eii~~L~~rL~D~D 347 (1670)
..+.++.+.|-.++- .+++++...+.|..--++.|-..+-.....++...+.. ....+|+....-.+.|++
T Consensus 485 ~~~~lgr~AL~nLL~--------~N~dLl~~~IdrCYss~~~va~gYF~vlaev~~~~~~~~~~~~~LL~L~Lfklg~~~ 556 (1120)
T PF14228_consen 485 ARHSLGRRALKNLLE--------HNPDLLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREYPPCPFWELLNLVLFKLGDES 556 (1120)
T ss_pred HHHHHHHHHHHHHHH--------hhHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCCCCCCHHHhHHHHHHhhcCCc
Confidence 334556666665554 34568888888888888888777667777777655432 234567777777889999
Q ss_pred hHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000321 348 ENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 402 (1670)
Q Consensus 348 EkVR~aaVkai~~la~~~l~~Vs~elL~~laeR~RDKK~~VR~eAm~~La~LY~~ 402 (1670)
..||..|++.+.-+....+..-..+-...+-+.+-++-+.|-+.|...|++....
T Consensus 557 ~eIR~~A~qLL~~Le~R~~~~s~~~~~~~f~~si~s~l~~vYk~aQ~eLS~~LA~ 611 (1120)
T PF14228_consen 557 SEIRSKAMQLLRALEERFFSSSGSEKSGDFRESISSKLPAVYKKAQFELSKRLAK 611 (1120)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccceehhccCCcHHHHHHHHHHHHHHHHH
Confidence 9999999888877765544332212222233556666666666665555555544
No 200
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=26.39 E-value=5.1e+02 Score=27.49 Aligned_cols=81 Identities=7% Similarity=0.027 Sum_probs=57.6
Q ss_pred HHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcC-----CCCHHHHHHHHHhhccC---ChhHHHHH
Q 000321 321 SCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN-----SIPVETVKLVAERLRDK---SVLVKRYT 392 (1670)
Q Consensus 321 ~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~-----~Vs~elL~~laeR~RDK---K~~VR~eA 392 (1670)
+++...+ ....+.+.+|.+||...+.+|.+.|+..+-.+....-. ..+.+.+..+...+..+ ...||..+
T Consensus 26 d~I~~~~--~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~ki 103 (133)
T cd03561 26 DLINLKP--NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKA 103 (133)
T ss_pred HHHhCCC--CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 3344443 34679999999999999999999999988777654322 22446666666666654 46899999
Q ss_pred HHHHHHHHHHH
Q 000321 393 MERLADIFRGC 403 (1670)
Q Consensus 393 m~~La~LY~~~ 403 (1670)
+..+...+..+
T Consensus 104 l~ll~~W~~~f 114 (133)
T cd03561 104 LELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHh
Confidence 88887766544
No 201
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=25.45 E-value=1.7e+03 Score=31.18 Aligned_cols=104 Identities=15% Similarity=0.134 Sum_probs=78.1
Q ss_pred HHHHhhhcCCChhHHHHHHHHhHHHHhcCC---CCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh---cCCCCH
Q 000321 298 SEFLKRLTDRIVAVRMSVLEHVKSCLLTDP---SRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA---LNSIPV 371 (1670)
Q Consensus 298 ~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p---~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~---l~~Vs~ 371 (1670)
..|...+.|+.-.=|.+.++....+|.+.. .......+.-.+.-++.|..-.|=..+...+..+|..- +.....
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~ 335 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAK 335 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 367788999999999999999999998765 11122355578888999999999988888888877632 333344
Q ss_pred HHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 000321 372 ETVKLVAERLRDKSVLVKRYTMERLADIFR 401 (1670)
Q Consensus 372 elL~~laeR~RDKK~~VR~eAm~~La~LY~ 401 (1670)
.++-.|.+|+.|||..+|..+...+=.+.+
T Consensus 336 ~v~p~lld~lkekk~~l~d~l~~~~d~~~n 365 (815)
T KOG1820|consen 336 NVFPSLLDRLKEKKSELRDALLKALDAILN 365 (815)
T ss_pred hhcchHHHHhhhccHHHHHHHHHHHHHHHh
Confidence 567788999999999998876655544444
No 202
>PF10266 Strumpellin: Hereditary spastic paraplegia protein strumpellin; InterPro: IPR019393 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. Strumpellin contains one known domain called a spectrin repeat that consists of three alpha-helices of a characteristic length wrapped in a left-handed coiled coil. The spectrin proteins have multiple copies of this repeat, which can then form multimers in the cell. Spectrin associates with the cell membrane via spectrin repeats in the ankyrin protein. The spectrin repeat is a structural platform for cytoskeletal protein assemblies. Two closely situated point mutations in human strumpellin lead to the condition of hereditary spastic paraplegia.
Probab=25.23 E-value=9.8e+02 Score=34.27 Aligned_cols=24 Identities=8% Similarity=0.174 Sum_probs=14.3
Q ss_pred HHHHHhhCCcCccccHHHHHHHHh
Q 000321 624 LGILARFSPLLLGGTEEELVNLLK 647 (1670)
Q Consensus 624 L~~IS~~~P~lFk~~v~~Li~lL~ 647 (1670)
|..+|+++..-+-.++....+++-
T Consensus 583 l~sVS~yYS~eLv~~vR~VLqiIP 606 (1081)
T PF10266_consen 583 LSSVSQYYSSELVKYVRKVLQIIP 606 (1081)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 555777776666555555555443
No 203
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=24.96 E-value=2.7e+02 Score=30.87 Aligned_cols=77 Identities=16% Similarity=0.113 Sum_probs=47.8
Q ss_pred hhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhH
Q 000321 309 VAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLV 388 (1670)
Q Consensus 309 ~~VR~~~v~~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~Vs~elL~~laeR~RDKK~~V 388 (1670)
-..|..|+-.+..+.. .....++++.+...+.|.+.-||.++--++.+++.. -|..++..+.....+.....
T Consensus 120 ~~rR~~~~~~~~~~~~----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~----~~~~v~~~l~~~~~~~~~~t 191 (197)
T cd06561 120 WVRRAAIVLLLRLIKK----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK----DPERVIAFLEKNGLSMPRLT 191 (197)
T ss_pred HHHHHHHHHHHHHHHh----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh----CHHHHHHHHHHHHHhCChHH
Confidence 3456666666665443 123456777777778888899999888888887776 34455555555444444444
Q ss_pred HHHHH
Q 000321 389 KRYTM 393 (1670)
Q Consensus 389 R~eAm 393 (1670)
.++|+
T Consensus 192 ~r~a~ 196 (197)
T cd06561 192 LRYAI 196 (197)
T ss_pred HHHHc
Confidence 44443
No 204
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=24.54 E-value=26 Score=40.91 Aligned_cols=18 Identities=39% Similarity=0.577 Sum_probs=11.0
Q ss_pred cccccccCCCCCCccccc
Q 000321 1602 SREEANEDGKSDSEGNEE 1619 (1670)
Q Consensus 1602 ~~~~~~~~~~~d~~~~~~ 1619 (1670)
+++++++++++|+++.++
T Consensus 244 s~~d~d~e~esd~de~Ee 261 (303)
T KOG3064|consen 244 SDEDSDSEDESDSDEIEE 261 (303)
T ss_pred cccccccccCCchhhHHH
Confidence 555666666666666543
No 205
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=23.82 E-value=1.7e+02 Score=29.46 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHHHhhhhhcCCCCH---HHHHHHHHhhccCChhHHHHHHHHHHHHHHHHh
Q 000321 347 DENVRKQVVAVICDVACHALNSIPV---ETVKLVAERLRDKSVLVKRYTMERLADIFRGCC 404 (1670)
Q Consensus 347 DEkVR~aaVkai~~la~~~l~~Vs~---elL~~laeR~RDKK~~VR~eAm~~La~LY~~~~ 404 (1670)
+...|.++|-.+|.+....+-.||. ++|..|+....| ...||..+=++|+++++.+.
T Consensus 2 ~~~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~ 61 (90)
T PF11919_consen 2 DLRRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQ 61 (90)
T ss_dssp H-HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCc
Confidence 3456889999999999888888887 567889999997 78999999999999999874
No 206
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.53 E-value=3.7e+02 Score=36.66 Aligned_cols=91 Identities=19% Similarity=0.264 Sum_probs=72.9
Q ss_pred chHHHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhhhcCCChhHHHH
Q 000321 235 IDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMS 314 (1670)
Q Consensus 235 ~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~~~~~~~y~~~w~~fL~R~~D~s~~VR~~ 314 (1670)
.+.-..|-+.+--.|+.+.-|+..+|+ .|-.+|+-|++++.-+++..+.
T Consensus 107 dd~g~~iae~fik~qd~I~lll~~~e~----~DF~VR~~aIqLlsalls~r~~--------------------------- 155 (970)
T KOG0946|consen 107 DDLGLWIAEQFIKNQDNITLLLQSLEE----FDFHVRLYAIQLLSALLSCRPT--------------------------- 155 (970)
T ss_pred hHHHHHHHHHHHcCchhHHHHHHHHHh----hchhhhhHHHHHHHHHHhcCCH---------------------------
Confidence 356677888888899999999999887 8999999999999999987652
Q ss_pred HHHHhHHHHhcCCCCCChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhh
Q 000321 315 VLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA 365 (1670)
Q Consensus 315 ~v~~~~~iL~~~p~~~~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~ 365 (1670)
.+.++|+.+|. =+..|.+-|.|..|-||-+++-.++++...+
T Consensus 156 ---e~q~~ll~~P~------gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n 197 (970)
T KOG0946|consen 156 ---ELQDALLVSPM------GISKLMDLLRDSREPIRNEAILLLSELVKDN 197 (970)
T ss_pred ---HHHHHHHHCch------hHHHHHHHHhhhhhhhchhHHHHHHHHHccC
Confidence 23466777774 3556778899999999999999998886644
No 207
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=23.53 E-value=1.8e+03 Score=29.28 Aligned_cols=49 Identities=20% Similarity=0.168 Sum_probs=39.3
Q ss_pred HHHHHHHHHhhCchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCC
Q 000321 237 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG 286 (1670)
Q Consensus 237 ~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~Rl~At~llG~mfs~~~ 286 (1670)
+..++..++...|+.|.+-+|.|...|..-++..|.+ +..+--+++...
T Consensus 182 LLrvlS~Vye~~P~~i~PhlP~l~~lL~q~~p~~~~l-l~~l~~LI~Qk~ 230 (851)
T KOG3723|consen 182 LLRVLSAVYEKQPQPINPHLPELLALLSQLEPEQYHL-LRLLHVLIKQKQ 230 (851)
T ss_pred HHHHHHHHHhcCCCccCcccHHHHHHhcCCCHHHHHH-HHHHHHHHHhcc
Confidence 5678889999999999999999999999999888654 455555665543
No 208
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=22.88 E-value=1.6e+03 Score=28.44 Aligned_cols=254 Identities=15% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHhHHHHhcCCCCC----ChHHHHHHHHhhhCCChhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHH
Q 000321 315 VLEHVKSCLLTDPSRA----DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKR 390 (1670)
Q Consensus 315 ~v~~~~~iL~~~p~~~----~~~eii~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~Vs~elL~~laeR~RDKK~~VR~ 390 (1670)
+-+..-.++.+.+-.. .-...+..|..++.=+|.+-|.. ++++..|+=+|-...|.
T Consensus 110 vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~--------------------lk~~l~~iy~k~~~~r~ 169 (409)
T PF01603_consen 110 VYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDY--------------------LKTILHRIYGKFPNLRS 169 (409)
T ss_dssp HHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHH--------------------HHHHHHHHHHH-TTTHH
T ss_pred HHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHH--------------------HHHHHHHHHHHhhhhHH
Q ss_pred HHHHHHHHHHHHHhhhccCCCcchhccccchHHHhhhhccCCCCchhHHHHhhccCcCCCCCHHHHHHHHHHHHhcCCHH
Q 000321 391 YTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRI 470 (1670)
Q Consensus 391 eAm~~La~LY~~~~~~~~~~~~~~~~~~wIPs~IL~~~Y~nD~~~~lVE~vL~e~LlP~~~~~~~R~~~ll~l~~~LD~~ 470 (1670)
.-...+.+++..|. ........+..+-+|=+.|++.|-.+- ..-....+...|+|+..+ ..+..+.+.
T Consensus 170 ~Ir~~i~~~~~~fi-~e~~~~~gI~elLeil~sii~gf~~pl--k~eh~~fl~~vllPLh~~---------~~~~~y~~~ 237 (409)
T PF01603_consen 170 FIRKSINNIFYRFI-YETERHNGIAELLEILGSIINGFAVPL--KEEHKQFLRKVLLPLHKS---------PHLSSYHQQ 237 (409)
T ss_dssp HHHHHHHHHHHHHH-HTTS--STHHHHHHHHHHHHTT--SS----HHHHHHHHHTTGGGGGS---------TGGGGTHHH
T ss_pred HHHHHHHHHHHHHh-cCcccccCHHHHHHHHHHHHhccCCCC--cHHHHHHHHHHHHHHhcC---------CcHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHH
Q 000321 471 EMKALEKILEQKQRLQQEMQRYL-----------------SLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFL 533 (1670)
Q Consensus 471 ~~kal~~il~~k~~l~~~~~~~l-----------------~l~~~~~~~d~~ei~~kl~~~I~~Ls~~FPDp~Ka~~~L~ 533 (1670)
=...+..++.....+...+-+++ ++-+-......++.++-+...++.|+.+. .+.+..-..+
T Consensus 238 L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci-~S~h~qVAEr 316 (409)
T PF01603_consen 238 LSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCI-SSPHFQVAER 316 (409)
T ss_dssp HHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHH-TSSSHHHHHH
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh-CCCCHHHHHH
Q ss_pred HHHhhccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhccccChhHHHHHHHHHHh-hcccc
Q 000321 534 ILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAA-QKSSA 612 (1670)
Q Consensus 534 kf~kLnD~RiykLLk~~id~~td~~t~~~a~~ELlkkL~~~~~l~e~l~~Ll~R~S~li~Nks~V~~LL~~v~~-~~~~~ 612 (1670)
.+.=+++.++..++ ..+.... +|.|+.-+.+ +...+
T Consensus 317 Al~~w~n~~~~~li-------~~~~~~i------------------------------------~p~i~~~L~~~~~~HW 353 (409)
T PF01603_consen 317 ALYFWNNEYFLSLI-------SQNSRVI------------------------------------LPIIFPALYRNSKNHW 353 (409)
T ss_dssp HHGGGGSHHHHHHH-------HCTHHHH------------------------------------HHHHHHHHSSTTSS-S
T ss_pred HHHHHCCHHHHHHH-------HhChHHH------------------------------------HHHHHHHHHHHHHHHh
Q ss_pred hhhhHHHHHHHHHHHHhhCCcCccccHHHHHH
Q 000321 613 NAQFMQSCMDILGILARFSPLLLGGTEEELVN 644 (1670)
Q Consensus 613 ~~~~~~~a~eLL~~IS~~~P~lFk~~v~~Li~ 644 (1670)
+......|..+|..+....|.+|..+......
T Consensus 354 n~~Vr~~a~~vl~~l~~~d~~lf~~~~~~~~~ 385 (409)
T PF01603_consen 354 NQTVRNLAQNVLKILMEMDPKLFDKCAQKYKE 385 (409)
T ss_dssp STTHHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
No 209
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=22.23 E-value=3.2e+02 Score=30.85 Aligned_cols=111 Identities=23% Similarity=0.324 Sum_probs=56.1
Q ss_pred cchHHHHHHHHHHHHhhcCCCCCCC--hhHHHHHHHHHHHhccCC-CCCCCCChhhHHHHHHHHHhhhhheeeccCCchH
Q 000321 62 KDVKLLVATCICEITRITAPEAPYS--DDVLKDIFQLIVGTFSGL-KDTGGPSFGRRVVILETLAKYRSCVVMLDLECDE 138 (1670)
Q Consensus 62 ~~Vra~vAcCLadIlRI~APdaPyt--d~~LkdIF~lfi~qf~~L-~d~~~p~f~q~~~LLe~La~vks~vl~~DL~~~~ 138 (1670)
..||..++-||..|+.-..|..|+- .++|.+||..--.. .+ ......+|++-+-||.. +.
T Consensus 21 DrvR~~A~~~l~~ll~~~~~~~~~ip~~~~L~~i~~~~~~~--~~~w~~~~~~F~~l~~LL~~---------------~~ 83 (193)
T PF12612_consen 21 DRVREVAGKCLQRLLHSQDPTIPHIPHREELQDIFPSESEA--SLNWSSSSEYFPRLVKLLDL---------------PE 83 (193)
T ss_pred HHHHHHHHHHHHHHhcCCCccccCCCcHHHHHHHccccccc--ccccCCHHHHHHHHHHHhcc---------------HH
Confidence 4499999999999995443433433 36777777543221 11 11122344444433321 13
Q ss_pred HHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHhc---ccccccHHHHHHHHHHhc
Q 000321 139 LVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLE---ESEDIQEDLLVILLSALG 190 (1670)
Q Consensus 139 Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~vIe---Ese~vp~~vLd~IL~~l~ 190 (1670)
.-..++..+.--+ ++..+.+......-|...+. +.......++..|+..+.
T Consensus 84 y~~~ll~Glv~S~-G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il~ 137 (193)
T PF12612_consen 84 YRYSLLSGLVVSA-GGLTESLVRASSAALLSYLRELSDSPEELEQVLSDLLSILK 137 (193)
T ss_pred HHHHHHhHHHhcC-CCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 3444444444433 33444555555555555553 334455555555555553
No 210
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=22.19 E-value=5e+02 Score=31.86 Aligned_cols=125 Identities=10% Similarity=0.186 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhccccc-------ccHHHHHHHHHHhcCC----CcHHHHHHHHHHHHHhhhhhHHHHHHHHHHh----
Q 000321 159 VLSSMQTIMIVLLEESED-------IQEDLLVILLSALGRN----KNDTARRLAMNVIEQCAGKLEAGIKQFLVSS---- 223 (1670)
Q Consensus 159 V~~~m~~IL~~vIeEse~-------vp~~vLd~IL~~l~~~----~~~~a~~lA~~v~~~~~dkL~~~I~qyf~~i---- 223 (1670)
|...++.++...|+-++. +=+.+++.+|.-...+ +....-.+...||++-.+.+.+.+.+.|..+
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~T 122 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECT 122 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 445555666666665442 2234444444322221 2235567888888888887777777766543
Q ss_pred ---hcCCCCCC-CCcchHHHHHHHHHhhCchhhh--------hhhhhhcccccCCChHHHHHHHHHHHHhhc
Q 000321 224 ---MSGDSRPG-HSHIDYHEVIYDVYRCSPQILS--------GVVPYLTGELLTDQLDTRLKAVGLVGDLFA 283 (1670)
Q Consensus 224 ---l~~~~~~~-~~~~~~h~Li~eL~~~~P~lL~--------~ViP~Le~EL~sed~~~Rl~At~llG~mfs 283 (1670)
+..+-... +-....+.++..+.+.||..|. .++-.+..-+++.+.++-..+.+++..|+.
T Consensus 123 l~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~ 194 (319)
T PF08767_consen 123 LPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLN 194 (319)
T ss_dssp HHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 33331111 1123578888888888776665 456666777778888888888888888885
No 211
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=21.84 E-value=2.6e+02 Score=30.32 Aligned_cols=71 Identities=17% Similarity=0.205 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccH------HHHHHHHhhc-cccchHHHHHHHHHhhcc
Q 000321 595 KEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE------EELVNLLKEE-NEIIKEGILHVLAKAGGT 667 (1670)
Q Consensus 595 ks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v------~~Li~lL~~~-~~~~~~~aLkiLak~~k~ 667 (1670)
++.+..|.+++.. +|..-.-.|..||..+.+.|...|...+ ++|+.++... .+.+...+|.++..|+..
T Consensus 40 k~a~ral~krl~~----~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 40 KYAMRALKKRLLS----KNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHHHHHHHcC----CChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 5566666666632 2223345678888889988888887653 6677766642 234667888888888765
Q ss_pred hh
Q 000321 668 IR 669 (1670)
Q Consensus 668 ~~ 669 (1670)
++
T Consensus 116 f~ 117 (142)
T cd03569 116 FR 117 (142)
T ss_pred hC
Confidence 44
No 212
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=20.75 E-value=3.5e+02 Score=35.21 Aligned_cols=109 Identities=19% Similarity=0.162 Sum_probs=58.2
Q ss_pred HHhhcCCCccchHHHHHHHHHHhhhhc---CCCchHHHHHHHHHhhcccccccchHHHHHHHHHhhhccccccCCCCCCC
Q 000321 702 LAAITKDDGLKSLSVLYKRLVDMLEEK---THLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKAC 778 (1670)
Q Consensus 702 Laa~~~~~~~~~~~~L~~~L~~~L~~~---~~l~t~L~sL~~Iaq~aP~vfe~~~~eI~~fiik~ILl~~~~~~~~~~~~ 778 (1670)
|+|+.+.+=....+.|+++|+-++..+ ..-+..++++.+||-+.-. +..-+|+.+=|--||+...+
T Consensus 220 LvAviNskfP~IgElLlkrLilqf~r~f~RnDk~~c~~~~kfiahLinq---~VahEIv~Leil~lLLe~PT-------- 288 (739)
T KOG2140|consen 220 LVAVINSKFPQIGELLLKRLILQFKRSFRRNDKVSCLNASKFIAHLINQ---QVAHEIVALEILTLLLERPT-------- 288 (739)
T ss_pred HHHHHccCCchHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCC--------
Confidence 334444432233445667776665422 1456667777777754321 12335655544456665433
Q ss_pred CCCchhhHHHHHHHHHHHHHhhcCCCccccccchHHHHHHHHHhhccCccc
Q 000321 779 WDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMS 829 (1670)
Q Consensus 779 W~d~se~~~aKi~aLK~Lvn~ll~~~~~~~~~~i~~ll~lL~~il~~GEl~ 829 (1670)
+++ ...-|..||.|...|.-++ ..+...+|.-|++|+..|||.
T Consensus 289 --ddS--vevaI~flkecGakL~~VS----pr~~n~IfErlR~ILhe~Eld 331 (739)
T KOG2140|consen 289 --DDS--VEVAIAFLKECGAKLAEVS----PRALNGIFERLRYILHEGELD 331 (739)
T ss_pred --Cch--HHHHHHHHHHHHHHHHHhC----hHHHhHHHHHHHHHHhHhhHH
Confidence 122 1222445555555553322 235677889999999888876
No 213
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=20.71 E-value=3.1e+02 Score=29.75 Aligned_cols=71 Identities=14% Similarity=0.149 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccH------HHHHHHHhh------ccccchHHHHHHHH
Q 000321 595 KEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE------EELVNLLKE------ENEIIKEGILHVLA 662 (1670)
Q Consensus 595 ks~V~~LL~~v~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~v------~~Li~lL~~------~~~~~~~~aLkiLa 662 (1670)
+..+..|.+++. .+|..-.-.|+.||..+.+.|-.-|..++ .+|++++.. ..+.+...+|..+.
T Consensus 37 k~a~rai~krl~----~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~ 112 (139)
T cd03567 37 QLAVRLLAHKIQ----SPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLY 112 (139)
T ss_pred HHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHH
Confidence 344555555543 12222234566777777777777775543 578887753 12346778888888
Q ss_pred Hhhcchh
Q 000321 663 KAGGTIR 669 (1670)
Q Consensus 663 k~~k~~~ 669 (1670)
.|+..++
T Consensus 113 ~W~~~f~ 119 (139)
T cd03567 113 SWTLELP 119 (139)
T ss_pred HHHHHhc
Confidence 8876554
No 214
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=20.34 E-value=7.6e+02 Score=33.48 Aligned_cols=218 Identities=17% Similarity=0.247 Sum_probs=120.5
Q ss_pred ChhhHHHHHHHHHHHHhcccccccHHHHHHHHHHhcCCC-----c----------H-----------HHHHHHHHHHHHh
Q 000321 155 HPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNK-----N----------D-----------TARRLAMNVIEQC 208 (1670)
Q Consensus 155 ~~~~V~~~m~~IL~~vIeEse~vp~~vLd~IL~~l~~~~-----~----------~-----------~a~~lA~~v~~~~ 208 (1670)
.|.-+...|-|.....=..++...+.++.-|=..|..+. + + .--+|..+||+--
T Consensus 455 ~PPGims~ldD~~At~Ha~~~~aDqa~~qrLn~~~~s~phF~~~s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm 534 (1106)
T KOG0162|consen 455 RPPGIMSALDDVCATAHADSEGADQALLQRLNKLFGSHPHFESRSNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELM 534 (1106)
T ss_pred CCchHHHHHHHHHHHhccccchhHHHHHHHHHHHhcCCCccccccCceEEEEeccceeeecccccccchhHHHHHHHHHH
Confidence 366788888888888777777788877776654553221 0 0 2246666666554
Q ss_pred hhhhHHHHHHHHHHhhcCCCC--CCCC----cchHHHHHHHHHhhCchhhhhhhhhhcccccCCChHHH-HHHHHHHHHh
Q 000321 209 AGKLEAGIKQFLVSSMSGDSR--PGHS----HIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTR-LKAVGLVGDL 281 (1670)
Q Consensus 209 ~dkL~~~I~qyf~~il~~~~~--~~~~----~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sed~~~R-l~At~llG~m 281 (1670)
-..-.+.+...|-+-+..+++ +... ...+.+|+-.|.+|.|..+--+=|.=+- --.|=++-| +.-++-||
T Consensus 535 ~ts~~~Fl~slFPe~v~~dskrRP~Tag~kIkkqANdLVeTLmKc~P~YIR~IKPNeTK-~pnD~ee~~V~HQveYLG-- 611 (1106)
T KOG0162|consen 535 QTSENPFLKSLFPENVDADSKRRPPTAGDKIKKQANDLVETLMKCQPHYIRCIKPNETK-SPNDWEESRVKHQVEYLG-- 611 (1106)
T ss_pred hccchHHHHHhCchhhcccccCCCCCchhhHHhhHHHHHHHHHhcCcceeEeeCCCCCC-CCccHHHHHHHHHHHhcc--
Confidence 444445555555443433322 2222 2248999999999999999888886322 222223333 33444444
Q ss_pred hcCCC-C---CchhhcHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhcCCCCCChHHHHH-HHHhhhCCChhHHHHHHHH
Q 000321 282 FAVPG-S---ANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILT-ALCDRLLDFDENVRKQVVA 356 (1670)
Q Consensus 282 fs~~~-~---~~~~~y~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~eii~-~L~~rL~D~DEkVR~aaVk 356 (1670)
... . -..=+|+.+|..|+.||.=.+|.- |-.+- .++ .+-++ .|.+--+++|+ -
T Consensus 612 --LqENiRvRRAGfAYRr~F~kF~qRyailsp~t---~~twq---------GD~-~~av~~il~~~~m~~~q-y------ 669 (1106)
T KOG0162|consen 612 --LQENIRVRRAGFAYRRAFDKFAQRYAILSPQT---WPTWQ---------GDE-KQAVEHILRDVNMPSDQ-Y------ 669 (1106)
T ss_pred --hhhheeehhhhhHHHHHHHHHHHHheecCccc---ccccc---------cch-HHHHHHHHHhcCCChhH-h------
Confidence 221 0 112368999999999998888765 43221 122 22222 22223333332 1
Q ss_pred HHHHhhh-hhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhh
Q 000321 357 VICDVAC-HALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCL 405 (1670)
Q Consensus 357 ai~~la~-~~l~~Vs~elL~~laeR~RDKK~~VR~eAm~~La~LY~~~~~ 405 (1670)
++.. ..|-.-|+.++ +.|-||||++.== ..++-+.|+.+..
T Consensus 670 ---QmG~tkVFiKnPEsLF--~LEemRer~~d~~---A~~IQkAWRrfv~ 711 (1106)
T KOG0162|consen 670 ---QMGVTKVFIKNPESLF--LLEEMRERKWDGM---ARRIQKAWRRFVA 711 (1106)
T ss_pred ---hccceeEEecChHHHH--HHHHHHHHHhhHH---HHHHHHHHHHHHH
Confidence 1222 22334466665 5688999987421 1233456666543
Done!