Query 000321
Match_columns 1670
No_of_seqs 275 out of 462
Neff 5.7
Searched_HMMs 29240
Date Tue Mar 26 17:47:53 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000321.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_98-102//hhsearch_pdb/000321hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b3u_A Protein (protein phosph 1.0 1 1 91.9 33.9 291 55-401 17-310 (588)
2 4fdd_A Transportin-1; heat rep 1.0 1 1 84.0 54.2 160 239-398 112-282 (852)
3 2bpt_A Importin beta-1 subunit 1.0 1 1 81.5 49.4 139 262-400 232-397 (861)
4 1b3u_A Protein (protein phosph 1.0 1 1 80.0 32.3 67 334-400 164-231 (588)
5 4fdd_A Transportin-1; heat rep 1.0 1 1 79.0 56.7 94 735-856 650-743 (852)
6 1qgr_A Protein (importin beta 1.0 1 1 77.5 47.2 226 618-859 582-831 (876)
7 1u6g_C TIP120 protein, CAND1; 1.0 1 1 77.4 47.4 330 56-402 56-464 (1230)
8 1u6g_C TIP120 protein, CAND1; 1.0 1 1 73.6 68.9 335 57-402 95-507 (1230)
9 2bpt_A Importin beta-1 subunit 1.0 1 1 72.1 53.5 66 335-400 225-294 (861)
10 2vgl_B AP-2 complex subunit be 1.0 1 1 70.4 34.0 222 616-883 298-522 (591)
No 1
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=91.91 Aligned_cols=291 Identities=13% Similarity=0.139 Sum_probs=110.6
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCC
Q ss_conf 11058982137989999978875129999999158999999999821699888998714699999999743141001068
Q 000321 55 VLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDL 134 (1670)
Q Consensus 55 ~LL~HkD~~Vra~vAcCLadIlRI~APdAPytd~~LkdIF~lfi~ql~~L~d~~~p~f~q~~~lLe~LA~vks~vli~DL 134 (1670)
..|+|.|..+|..++-+|..+.+..-| +....++..++.... |+ ++ .-+..+.+.|...-. .+
T Consensus 17 ~~l~s~~~~~R~~A~~~l~~i~~~~~~-----~~~~~~l~~~L~~~~----d~-~~--~vr~~~~~~L~~~~~-----~~ 79 (588)
T 1b3u_A 17 DELRNEDVQLRLNSIKKLSTIALALGV-----ERTRSELLPFLTDTI----YD-ED--EVLLALAEQLGTFTT-----LV 79 (588)
T ss_dssp HHTTCSCHHHHHHHHHTHHHHHHHSCH-----HHHHHTHHHHHHHTC----CC-CH--HHHHHHHHHHTTCSG-----GG
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHCH-----HHHHHHHHHHHHHHC----CC-CH--HHHHHHHHHHHHHHH-----CC
T ss_conf 985062199999999719999998697-----989998998898755----78-58--999999999977876-----05
Q ss_pred CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC--CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 832899999999996324998251999999999999602344--538899999997137985789999999999965544
Q 000321 135 ECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESED--IQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKL 212 (1670)
Q Consensus 135 ~~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~iIeEse~--Ip~~vLd~IL~~l~~~~~~~A~~lA~~ii~~~~dkL 212 (1670)
...+....++..+..... +....|.......|..+...... +...++. ++..+........+..|..++......+
T Consensus 80 ~~~~~~~~ll~~L~~l~~-~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~-~l~~l~~~~~~~~R~~a~~~l~~~~~~~ 157 (588)
T 1b3u_A 80 GGPEYVHCLLPPLESLAT-VEETVVRDKAVESLRAISHEHSPSDLEAHFVP-LVKRLAGGDWFTSRTSACGLFSVCYPRV 157 (588)
T ss_dssp TSGGGGGGGHHHHHHHTT-SSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHH-HHHHHHTCSSHHHHHHHGGGHHHHTTTS
T ss_pred CCHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 859899998999999874-76079999999999999997999999999999-9999850777179999999999999856
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 79999999973159999988730377999999840730343112112012357776899999999998625999982100
Q 000321 213 EAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQ 292 (1670)
Q Consensus 213 ~~~I~qyf~~il~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~EL~sdd~~~Rl~At~llG~mfs~~~s~~a~~ 292 (1670)
. +.....++|.+..-+..++..+|..|.+.+|.+...-+.. ..
T Consensus 158 ~-----------------------------------~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~ 200 (588)
T 1b3u_A 158 S-----------------------------------SAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NV 200 (588)
T ss_dssp C-----------------------------------HHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HH
T ss_pred C-----------------------------------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHH--HH
T ss_conf 9-----------------------------------9999999999999848997889999999899999981677--67
Q ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-CCCCCH
Q ss_conf 4999999983005999339999999969878319999986789999986607971679999999999965321-378898
Q 000321 293 FHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-LNSIPV 371 (1670)
Q Consensus 293 y~~~w~~fL~R~~Dks~~VR~~~v~~~~~iL~s~p~~~~~~eI~~~L~~rL~D~DEkVR~aaVkai~~la~~~-l~~V~~ 371 (1670)
.+.+...++.-.+|.++.||...+++...+....+.......+++.+...+.|.+++||.+++.+++.++... ...+..
T Consensus 201 ~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~ 280 (588)
T 1b3u_A 201 KSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKT 280 (588)
T ss_dssp HHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 99999999988249928899989999999998579888887899999998069977899999999999999819521055
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 889999976036893699999999999999
Q 000321 372 ETVKLVAERLRDKSVLVKRYTMERLADIFR 401 (1670)
Q Consensus 372 elL~~LaeR~RDKK~~VR~eAi~~La~LY~ 401 (1670)
.++..+...+.|..+.||..|...|+.+-.
T Consensus 281 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 310 (588)
T 1b3u_A 281 DLVPAFQNLMKDCEAEVRAAASHKVKEFCE 310 (588)
T ss_dssp THHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 899999998589958999999987999999
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=83.96 Aligned_cols=160 Identities=14% Similarity=0.150 Sum_probs=78.3
Q ss_pred HHHHHHHHHC-CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHH-----HCHHHHHHHHHHHCCCCHHHH
Q ss_conf 9999998407-3034311211201235777689999999999862599998210-----049999999830059993399
Q 000321 239 EVIYDVYRCS-PQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE-----QFHSVFSEFLKRLTDRIVAVR 312 (1670)
Q Consensus 239 ~Li~eL~~~~-P~lL~~ViP~Le~EL~sdd~~~Rl~At~llG~mfs~~~s~~a~-----~y~~~w~~fL~R~~Dks~~VR 312 (1670)
.++..|.+.. |.-....+|.|..-+.+.+..+|..|..+++.++...+..+.. ....++..++.-+.|.++.||
T Consensus 112 ~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR 191 (852)
T 4fdd_A 112 ILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIR 191 (852)
T ss_dssp HHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHHHHCCCCHHHH
T ss_conf 99999998648135689999999987099989999999999999998578756343133299999999998567978999
Q ss_pred HHHHHHHHHHHHCCCC--CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHHHHCCCCHH
Q ss_conf 9999996987831999--99867899999866079716799999999999653213788---988899999760368936
Q 000321 313 MSVLEHVKSCLLTDPS--RADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI---PVETVKLVAERLRDKSVL 387 (1670)
Q Consensus 313 ~~~v~~~~~iL~s~p~--~~~~~eI~~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~V---~~elL~~LaeR~RDKK~~ 387 (1670)
...+++...++...+. .....++++.|...+.|.|+.||.+++.++..++......+ -..++..+...+.|....
T Consensus 192 ~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~ 271 (852)
T 4fdd_A 192 SHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDEN 271 (852)
T ss_dssp HHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 99999999998646387998899999999987179977899999999999998577989988999999999870699689
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q 000321 388 VKRYTMERLAD 398 (1670)
Q Consensus 388 VR~eAi~~La~ 398 (1670)
||..|++.+..
T Consensus 272 vr~~a~e~l~~ 282 (852)
T 4fdd_A 272 VALEACEFWLT 282 (852)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 3
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=81.52 Aligned_cols=139 Identities=11% Similarity=0.096 Sum_probs=85.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC-------------C
Q ss_conf 235777689999999999862599998210049-99999983005999339999999969878319-------------9
Q 000321 262 ELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFH-SVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD-------------P 327 (1670)
Q Consensus 262 EL~sdd~~~Rl~At~llG~mfs~~~s~~a~~y~-~~w~~fL~R~~Dks~~VR~~~v~~~~~iL~s~-------------p 327 (1670)
-+.+++..+|..|.+.++++....+..+....+ .+|..++....|.+..||...+++...+.... |
T Consensus 232 ~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 311 (861)
T 2bpt_A 232 ATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSP 311 (861)
T ss_dssp HHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCS
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 86599889999999999999999889999988999999999987377278999999999999987886433321035773
Q ss_pred C--CC----CHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 9--99----86789999986607971-------67999999999996532137889888999997603689369999999
Q 000321 328 S--RA----DAPQILTALCDRLLDFD-------ENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTME 394 (1670)
Q Consensus 328 ~--~~----~~~eI~~~L~~rL~D~D-------EkVR~aaVkai~~la~~~l~~V~~elL~~LaeR~RDKK~~VR~eAi~ 394 (1670)
. .. ....+++.+...+.+.| ..||.++..++..++......+-..++..+.+.+.|..+.+|..|+.
T Consensus 312 ~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~ 391 (861)
T 2bpt_A 312 LQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVM 391 (861)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 25699999999889999999987066530124686899999999999987408689999999998757997269999999
Q ss_pred HHHHHH
Q ss_conf 999999
Q 000321 395 RLADIF 400 (1670)
Q Consensus 395 ~La~LY 400 (1670)
.|+.+-
T Consensus 392 ~l~~i~ 397 (861)
T 2bpt_A 392 AFGSIM 397 (861)
T ss_dssp HHHHTS
T ss_pred HHHHHH
T ss_conf 999998
No 4
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=79.99 Aligned_cols=67 Identities=13% Similarity=0.102 Sum_probs=23.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 8999998660797167999999999996532137-889888999997603689369999999999999
Q 000321 334 QILTALCDRLLDFDENVRKQVVAVICDVACHALN-SIPVETVKLVAERLRDKSVLVKRYTMERLADIF 400 (1670)
Q Consensus 334 eI~~~L~~rL~D~DEkVR~aaVkai~~la~~~l~-~V~~elL~~LaeR~RDKK~~VR~eAi~~La~LY 400 (1670)
+++..+...+.|++..||.+++.+++.++..... .....++..+...+.|..+.||..|+..|+.+.
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~ 231 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIA 231 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999848997889999999899999981677679999999998824992889998999999999
No 5
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=79.02 Aligned_cols=94 Identities=13% Similarity=0.163 Sum_probs=39.8
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf 89999999331433145057899999983513566667887787778615678999999999995159876664320588
Q 000321 735 LQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDD 814 (1670)
Q Consensus 735 L~sLa~Iaq~ap~vfe~~~~eI~~fiik~ILl~~~~~~~~~~~~W~d~se~~~aKi~aLK~Lvn~ll~~~~~~~~~~i~~ 814 (1670)
...|+.|++..+..|......|..++++.+ .. +....+..-+|++..++..+-. ...+.+..
T Consensus 650 ~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l--~~------------~~~~v~~~a~~alg~i~~~~~~----~~~p~~~~ 711 (852)
T 4fdd_A 650 FALLGDLTKACFQHVKPCIADFMPILGTNL--NP------------EFISVCNNATWAIGEISIQMGI----EMQPYIPM 711 (852)
T ss_dssp HHHHHHHHHHCGGGTGGGHHHHHHHHHHTC--CT------------TSHHHHHHHHHHHHHHHHHHGG----GGGGGTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CC------------CCHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_conf 999999999816888987999999999876--94------------2068999999999999997117----67878999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999954037666677899666767579999999985310
Q 000321 815 LLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQ 856 (1670)
Q Consensus 815 ll~lL~~il~~GEl~~~~~tp~~~ksrLRLaAa~~lLKLAr~ 856 (1670)
++..|..++.. |. ....+|-.|+.++-+|++.
T Consensus 712 il~~L~~~l~~---------~~-~~~~~~~~a~~~igrl~~~ 743 (852)
T 4fdd_A 712 VLHQLVEIINR---------PN-TPKTLLENTAITIGRLGYV 743 (852)
T ss_dssp HHHHHHHHHTC---------SS-CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC---------CC-CCCHHHHHHHHHHHHHHHH
T ss_conf 99999998579---------98-8720778899999999986
No 6
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=77.49 Aligned_cols=226 Identities=11% Similarity=0.057 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHCC-CCCCCCHHHHHHH----HHHCC--CCCHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHCC
Q ss_conf 999999999985289-5734449999999----74102--1014879999998504046532006622899998884059
Q 000321 618 QSCMDILGILARFSP-LLLGGTEEELVNL----LKEEN--EIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEG 690 (1670)
Q Consensus 618 ~~a~eLL~~IS~~~P-~lFk~~v~~Li~l----L~d~~--~~~~~~aLkiLa~~~k~~~e~~~~~~s~l~~~L~~lal~G 690 (1670)
..+...|..+....+ .-|..+...++.. +.... ..+.+.++.++..+.......+.+.-..+.+.|.......
T Consensus 582 ~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 661 (876)
T 1qgr_A 582 SLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNY 661 (876)
T ss_dssp HHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999982854205789999999999998536888850899999999999987609999999999999987586
Q ss_pred -CHHHHHHHHHHHHHHCCCCCC---CHHHHHHHHHHHHHHHC--C--CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf -958799999999963078732---05999999999852105--9--983488999999933143314505789999998
Q 000321 691 -SRRQAKYAVHALAAITKDDGL---KSLSVLYKRLVDMLEEK--T--HLPAVLQSLGCIAQTAMPVFETRESEIEEFIKS 762 (1670)
Q Consensus 691 -tp~qAKyAvr~Laa~~~~~~~---~~~~~L~~~L~~~L~~~--~--~l~s~L~sLa~Iaq~ap~vfe~~~~eI~~fiik 762 (1670)
.+..-+.|+.+|+.+...-+. .....++..+...|... . -....+.++|.|+...+..|......|...+.+
T Consensus 662 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~ 741 (876)
T 1qgr_A 662 AEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQ 741 (876)
T ss_dssp TTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_conf 50879999999999999988785464599999999997487123387639999999999997035279999999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC---------CCCCCCHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 3513566667887787778615678999999999995159876---------6643205889999999540376666778
Q 000321 763 KILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKD---------AHIRPGIDDLLGILKSMLSYGEMSEDIE 833 (1670)
Q Consensus 763 ~ILl~~~~~~~~~~~~W~d~se~~~aKi~aLK~Lvn~ll~~~~---------~~~~~~i~~ll~lL~~il~~GEl~~~~~ 833 (1670)
-+ ... . + .++++|.+. ....+...++++...+.+... ....+.+..++.++..+.. + +
T Consensus 742 ~~-~~~-~-~-~~d~~~~~~--~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~------~-~ 808 (876)
T 1qgr_A 742 AS-QAQ-V-D-KSDYDMVDY--LNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAG------D-E 808 (876)
T ss_dssp HH-TCC-C-C-TTCHHHHHH--HHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHT------C-S
T ss_pred HH-HCC-C-C-CCCHHHHHH--HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC------C-C
T ss_conf 98-555-8-9-997588999--9999999999999999997457555554388999999999999999865------8-8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99666767579999999985310488
Q 000321 834 SSSVDKAHLRLASAKAVLRLSRQWDH 859 (1670)
Q Consensus 834 tp~~~ksrLRLaAa~~lLKLAr~~d~ 859 (1670)
. .-...|-.|..++=.|+..+..
T Consensus 809 ~---~~~~vr~~a~~~l~~l~~~~~~ 831 (876)
T 1qgr_A 809 D---HTDGVVACAAGLIGDLCTAFGK 831 (876)
T ss_dssp C---CCHHHHHHHHHHHHHHHHHHCT
T ss_pred C---CCHHHHHHHHHHHHHHHHHHCC
T ss_conf 8---8889999999999999988284
No 7
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=77.36 Aligned_cols=330 Identities=15% Similarity=0.165 Sum_probs=152.1
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCC
Q ss_conf 10589821379899999788751299999991589999999998216998889987146999999997431410010688
Q 000321 56 LLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLE 135 (1670)
Q Consensus 56 LL~HkD~~Vra~vAcCLadIlRI~APdAPytd~~LkdIF~lfi~ql~~L~d~~~p~f~q~~~lLe~LA~vks~vli~DL~ 135 (1670)
.|.+++..||..++-||..+..-+.+ .++..|+..++..+ .|++.. . +......|+.+-.. +.-+
T Consensus 56 ~L~d~~~~vR~~A~~~L~~l~~~~~~------~~~~~i~~~Ll~~l---~d~~~~--v-R~~a~~~L~~i~~~---l~~~ 120 (1230)
T 1u6g_C 56 LLEDKNGEVQNLAVKCLGPLVSKVKE------YQVETIVDTLCTNM---LSDKEQ--L-RDISSIGLKTVIGE---LPPA 120 (1230)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHHHHT---TCSSSH--H-HHHHHHHHHHHHHH---CC--
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHH---CCCCHH--H-HHHHHHHHHHHHHH---CCCC
T ss_conf 86699989999999999999975879------89999999999986---698388--9-99999999999996---7974
Q ss_pred ------CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC-C---CHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf ------32899999999996324998251999999999999602344-5---3889999999713798578999999999
Q 000321 136 ------CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESED-I---QEDLLVILLSALGRNKNDTARRLAMNVI 205 (1670)
Q Consensus 136 ------~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~iIeEse~-I---p~~vLd~IL~~l~~~~~~~A~~lA~~ii 205 (1670)
......+++..++....++....+......++..+++.... + -..++..++..+... ....+.-|...+
T Consensus 121 ~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~-~~~vR~~a~~al 199 (1230)
T 1u6g_C 121 SSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSP-RLAVRKRTIIAL 199 (1230)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCS-SHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
T ss_conf 4444117889999999999987578846799999999999999827677887999999999987599-689999999999
Q ss_pred HHHHHHHHH----HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHH----HHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 996554479----9999999731599999887303779999998407303----43112112012357776899999999
Q 000321 206 EQCAGKLEA----GIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQI----LSGVVPYLTGELLTDQLDTRLKAVGL 277 (1670)
Q Consensus 206 ~~~~dkL~~----~I~qyf~~il~~d~~~~~~~~~~h~Li~eL~~~~P~l----L~~ViP~Le~EL~sdd~~~Rl~At~l 277 (1670)
...+..+.. .+-.++-..+..+.. ......+-+.+..|.+..|.. +..++|.+-..+..++..+|..|...
T Consensus 200 ~~l~~~~~~~~~~~~l~~l~~~L~~~~~-~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~ 278 (1230)
T 1u6g_C 200 GHLVMSCGNIVFVDLIEHLLSELSKNDS-MSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQA 278 (1230)
T ss_dssp HHHTTTC----CTTHHHHHHHHHHHTCS-SCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9999856899999999999998616775-568999999999999986898998899999999998668977899999999
Q ss_pred HHHHHCCCCCCCHHHCHHHHHHHHHHH-------------------------------------CCCCHHHHHHHHHHHH
Q ss_conf 998625999982100499999998300-------------------------------------5999339999999969
Q 000321 278 VGDLFAVPGSANNEQFHSVFSEFLKRL-------------------------------------TDRIVAVRMSVLEHVK 320 (1670)
Q Consensus 278 lG~mfs~~~s~~a~~y~~~w~~fL~R~-------------------------------------~Dks~~VR~~~v~~~~ 320 (1670)
++.+...-+..+..-.+.+....+... .|.+..||.....+..
T Consensus 279 l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~ 358 (1230)
T 1u6g_C 279 FESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLD 358 (1230)
T ss_dssp HHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHH
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99999978487777689999999998278998887644110112233446530110013666455567799999999999
Q ss_pred HHHHCCCCC--CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC----------------------CCCCHHHHHH
Q ss_conf 878319999--9867899999866079716799999999999653213----------------------7889888999
Q 000321 321 SCLLTDPSR--ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHAL----------------------NSIPVETVKL 376 (1670)
Q Consensus 321 ~iL~s~p~~--~~~~eI~~~L~~rL~D~DEkVR~aaVkai~~la~~~l----------------------~~V~~elL~~ 376 (1670)
.+..+.+.. .....+++.|..++.|.++.||.+++.++..+....- ...-..++..
T Consensus 359 ~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ 438 (1230)
T 1u6g_C 359 AVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKA 438 (1230)
T ss_dssp HHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99974666799999999899998717986579999999999999972424343467520135645599999874699999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99760368936999999999999998
Q 000321 377 VAERLRDKSVLVKRYTMERLADIFRG 402 (1670)
Q Consensus 377 LaeR~RDKK~~VR~eAi~~La~LY~~ 402 (1670)
+...+.|..+.||..++..|+.+-..
T Consensus 439 l~~~l~~~~~~vr~~~~~~L~~l~~~ 464 (1230)
T 1u6g_C 439 LHKQMKEKSVKTRQCCFNMLTELVNV 464 (1230)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99986137787999999999999997
No 8
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=73.58 Aligned_cols=335 Identities=15% Similarity=0.144 Sum_probs=210.2
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHCCCC---CCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEECC
Q ss_conf 05898213798999997887512999---999915899999999982169988899871469999999974314100106
Q 000321 57 LKHQDKDVKLLVATCICEITRITAPE---APYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLD 133 (1670)
Q Consensus 57 L~HkD~~Vra~vAcCLadIlRI~APd---APytd~~LkdIF~lfi~ql~~L~d~~~p~f~q~~~lLe~LA~vks~vli~D 133 (1670)
|.+.+..||.-++-||..|.....|+ ..+......+++..++..+.. ++....+.+.|+.+.++-...- -.
T Consensus 95 l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~-----~~~~~~~~~al~~l~~~~~~~~-~~ 168 (1230)
T 1u6g_C 95 MLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK-----QEDVSVQLEALDIMADMLSRQG-GL 168 (1230)
T ss_dssp TTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC-----CSCHHHHHHHHHHHHHHHHHTC-SS
T ss_pred HCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCC-----CCCHHHHHHHHHHHHHHHHHHH-HH
T ss_conf 66983889999999999999967974444411788999999999998757-----8846799999999999999827-67
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHH
Q ss_conf 8832899999999996324998251999999999999602344-53889999999713798----578999999999996
Q 000321 134 LECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESED-IQEDLLVILLSALGRNK----NDTARRLAMNVIEQC 208 (1670)
Q Consensus 134 L~~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~iIeEse~-Ip~~vLd~IL~~l~~~~----~~~A~~lA~~ii~~~ 208 (1670)
+. ..+.+++..++....+.+ ..|.......+..++..... .-..++..++..+.... ...+...-..++...
T Consensus 169 l~--~~~~~ll~~l~~~L~~~~-~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~ 245 (1230)
T 1u6g_C 169 LV--NFHPSILTCLLPQLTSPR-LAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQA 245 (1230)
T ss_dssp CT--TTHHHHHHHHGGGGGCSS-HHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHS
T ss_pred HH--HHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 78--879999999999875996-899999999999999856899999999999998616775568999999999999986
Q ss_pred HHHHHHHHHHH---HHHHHCCCCCCCCCCCHHHHHHHHHHHHCCH----HHHHHHHHHCCCCCCC---------------
Q ss_conf 55447999999---9973159999988730377999999840730----3431121120123577---------------
Q 000321 209 AGKLEAGIKQF---LVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQ----ILSGVVPYLTGELLTD--------------- 266 (1670)
Q Consensus 209 ~dkL~~~I~qy---f~~il~~d~~~~~~~~~~h~Li~eL~~~~P~----lL~~ViP~Le~EL~sd--------------- 266 (1670)
...+.+++.+. +...+..++ + .-...+...+-.+.+.+|. .+..++|.+-.-|..+
T Consensus 246 ~~~~~~~l~~l~~~ll~~l~d~~-~-~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~ 323 (1230)
T 1u6g_C 246 GHRIGEYLEKIIPLVVKFCNVDD-D-ELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAM 323 (1230)
T ss_dssp SGGGTTSCTTHHHHHHHHHSSCC-T-TTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHCCCC-H-HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 89899889999999999866897-7-899999999999999784877776899999999982789988876441101122
Q ss_pred ----------------------CHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf ----------------------7689999999999862599998210049999999830059993399999999698783
Q 000321 267 ----------------------QLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLL 324 (1670)
Q Consensus 267 ----------------------d~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~R~~Dks~~VR~~~v~~~~~iL~ 324 (1670)
...+|..|..+++.+....+..+..-++.+...++.++.|....||...+++...++.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 403 (1230)
T 1u6g_C 324 DADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLK 403 (1230)
T ss_dssp ---------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 33446530110013666455567799999999999999746667999999998999987179865799999999999999
Q ss_pred CCCC---------------------CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC---HHHHHHHHHH
Q ss_conf 1999---------------------998678999998660797167999999999996532137889---8889999976
Q 000321 325 TDPS---------------------RADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIP---VETVKLVAER 380 (1670)
Q Consensus 325 s~p~---------------------~~~~~eI~~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~V~---~elL~~LaeR 380 (1670)
.... ......+++.+...|.|.+++||.+++.+++.+.......+. ..++..+...
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~ 483 (1230)
T 1u6g_C 404 QTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFS 483 (1230)
T ss_dssp HHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHH
T ss_pred HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_conf 72424343467520135645599999874699999999861377879999999999999976110577799999999999
Q ss_pred HCCCCH--HHHHHHHHHHHHHHHH
Q ss_conf 036893--6999999999999998
Q 000321 381 LRDKSV--LVKRYTMERLADIFRG 402 (1670)
Q Consensus 381 ~RDKK~--~VR~eAi~~La~LY~~ 402 (1670)
+.|++. .||.+|+..++.+...
T Consensus 484 L~d~~~~~~v~~~a~~~l~~~~~~ 507 (1230)
T 1u6g_C 484 LNDKSSSSNLKIDALSCLYVILCN 507 (1230)
T ss_dssp TTCSSSCHHHHHHHHHHHHHHHHS
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 748788516899999999999983
No 9
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=72.06 Aligned_cols=66 Identities=14% Similarity=0.242 Sum_probs=23.0
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCH----HHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 9999986607971679999999999965321378898----88999997603689369999999999999
Q 000321 335 ILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV----ETVKLVAERLRDKSVLVKRYTMERLADIF 400 (1670)
Q Consensus 335 I~~~L~~rL~D~DEkVR~aaVkai~~la~~~l~~V~~----elL~~LaeR~RDKK~~VR~eAi~~La~LY 400 (1670)
++..|...+.|.+++||.+++.++..++......+.. .++..+...+.|....||..|+..+..+.
T Consensus 225 ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~ 294 (861)
T 2bpt_A 225 LMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTIC 294 (861)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 9999999865998899999999999999998899999889999999999873772789999999999999
No 10
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=1.00 E-value=1 Score=70.37 Aligned_cols=222 Identities=13% Similarity=0.124 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf 58999999999985289573444999999974102101487999999850404653200662289999888405995879
Q 000321 616 FMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQA 695 (1670)
Q Consensus 616 ~~~~a~eLL~~IS~~~P~lFk~~v~~Li~lL~d~~~~~~~~aLkiLa~~~k~~~e~~~~~~s~l~~~L~~lal~Gtp~qA 695 (1670)
..-.+.+-|..+...+|.+|..+...+.... +++..+...+|.+|++.+.. ++. ..+...|..|.....+.-.
T Consensus 298 vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~-~d~~~Ir~~al~~L~~l~~~--~nv----~~iv~~L~~~l~~~d~~~r 370 (591)
T 2vgl_B 298 VQYVALRNINLIVQKRPEILKQEIKVFFVKY-NDPIYVKLEKLDIMIRLASQ--ANI----AQVLAELKEYATEVDVDFV 370 (591)
T ss_dssp HHHHHHHHHHHHHHHCCSTTTTCTTTTSCCT-TSCHHHHHHHHHHHHHTCCS--STH----HHHHHHHHHHTTSSCHHHH
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHEECC-CCHHHHHHHHHHHHHHHCCH--HHH----HHHHHHHHHHHHCCCHHHH
T ss_conf 8999999999999869698999887550036-99399999999999987786--239----9999999999865799999
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999630787320599999999985210599--8348899999993314331450578999999835135666678
Q 000321 696 KYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTH--LPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRN 773 (1670)
Q Consensus 696 KyAvr~Laa~~~~~~~~~~~~L~~~L~~~L~~~~~--l~s~L~sLa~Iaq~ap~vfe~~~~eI~~fiik~ILl~~~~~~~ 773 (1670)
+.|+++|+.++..-. .....++..|++.+..... ....+.++..|.+..|...+. ++..+..-+ ..
T Consensus 371 ~~~v~aI~~la~~~~-~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~----~v~~L~~~l-~~------ 438 (591)
T 2vgl_B 371 RKAVRAIGRCAIKVE-QSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYES----IIATLCENL-DS------ 438 (591)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCT----THHHHHHTT-TT------
T ss_pred HHHHHHHHHHHHHCH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHH----HHHHHHHHH-HH------
T ss_conf 999999999998574-679999999999983551689999999999999979205789----999999888-74------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 87787778615678999999999995159876664320588999999954037666677899666767579999999985
Q 000321 774 DTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRL 853 (1670)
Q Consensus 774 ~~~~~W~d~se~~~aKi~aLK~Lvn~ll~~~~~~~~~~i~~ll~lL~~il~~GEl~~~~~tp~~~ksrLRLaAa~~lLKL 853 (1670)
+..++ ++..+ -|++|--..... ... .+|..++.. +.. .-...|+++-.++.||
T Consensus 439 ------~~~~~---~~~~~-----~wilGey~~~~~-~~~---~~l~~l~~~--~~~-------~~~~vr~~~l~a~~Kl 491 (591)
T 2vgl_B 439 ------LDEPD---ARAAM-----IWIVGEYAERID-NAD---ELLESFLEG--FHD-------ESTQVQLTLLTAIVKL 491 (591)
T ss_dssp ------CCSHH---HHHHH-----HHHHHTTCTTCT-THH---HHHHHHSTT--CSS-------SCHHHHHHHHHHHHHH
T ss_pred ------CCCHH---HHHHH-----HHHHHCCCCCCC-CHH---HHHHHHHHH--HCC-------CCHHHHHHHHHHHHHH
T ss_conf ------23789---99999-----999970312136-789---999999986--645-------9888999999999999
Q ss_pred HHCCCCCCCHHHHHHHHHCCCC-CCHHHHHH
Q ss_conf 3104887788999998312467-72669999
Q 000321 854 SRQWDHKIPVDVFHLTLRTPEI-SFPQAKKL 883 (1670)
Q Consensus 854 Ar~~d~~I~~~~f~l~~ll~qD-~~~~VR~~ 883 (1670)
.........+.+.+++.....| ..++||.+
T Consensus 492 ~~~~p~~~~~~i~~ll~~~~~d~~d~evrdR 522 (591)
T 2vgl_B 492 FLKKPSETQELVQQVLSLATQDSDNPDLRDR 522 (591)
T ss_dssp HTTCCSTTHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 9619657999999999986535899679999
Done!