BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000322
(1670 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O60293|ZC3H1_HUMAN Zinc finger C3H1 domain-containing protein OS=Homo sapiens GN=ZFC3H1
PE=1 SV=3
Length = 1989
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 64/307 (20%), Positives = 123/307 (40%), Gaps = 31/307 (10%)
Query: 1015 VEMALLILNQDANKL-EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMF 1073
+++A LNQ+ + E + AL++L+RALE + + +W YL +F +M
Sbjct: 1365 LKLAYKYLNQNEGECSESLDSALNVLARALENNKDNPEIWCHYLRLFSKRGTKDEVQEMC 1424
Query: 1074 SYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLF 1133
+V++ + W +++ + + + L L A + + S +L+
Sbjct: 1425 ETAVEYAPDYQSFW-TFLHLESTFEEKDYVCERMLEFLMGAAKQETSNIL--SFQLLEAL 1481
Query: 1134 LQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYL 1193
L +Q +G + A+ + L +ND + L SD+ + W+ ++L
Sbjct: 1482 LFRVQLHIFTGRCQSALAILQNAL---KSAND------GIVAEYLKTSDRCLAWLAYIHL 1532
Query: 1194 VIYRKLP--------DAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELY 1245
+ + LP D +++ E F + W VQ + + E AV +
Sbjct: 1533 IEFNILPSKFYDPSNDNPSRIVNTES--FVMPWQAVQDVKTNPDMLLAVFEDAVKAC--- 1587
Query: 1246 SNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYP---SCLE-LVLMK 1301
ESL E + + N I +L E +M L + ++ P LE LV +
Sbjct: 1588 -TDESLAVEERIEACLPLYTNMIALHQLLERYEAAMELCKSLLESCPINCQLLEALVALY 1646
Query: 1302 ARLQKHD 1308
+ +HD
Sbjct: 1647 LQTNQHD 1653
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 852 IDPLWPLCMYELRGKCNNDECPWQHVKYFADRNKNLHDDSDS-----AGCQIGST 901
I+P C ++L G CN+D+C WQH++ + K L D S GC ST
Sbjct: 1179 IEPDQCFCRFDLTGTCNDDDCQWQHIQDYTLSRKQLFQDILSYNLSLIGCAETST 1233
>sp|Q8CHP0|ZC3H3_MOUSE Zinc finger CCCH domain-containing protein 3 OS=Mus musculus
GN=Zc3h3 PE=2 SV=1
Length = 950
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 13/66 (19%)
Query: 857 PLCMYELRGKCNNDECPWQHVKYFADRNKNLHDDSDSAGCQIGSTIPQEHCNVGTKLSKG 916
P+C Y L+G C+N CP+ HV + R ++ S + +C +G K K
Sbjct: 722 PVCSYFLKGICSNSNCPYSHV--YVSRK-----------AEVCSDFLKGYCPLGAKCKKK 768
Query: 917 HDILTP 922
H +L P
Sbjct: 769 HTLLCP 774
>sp|Q8IXZ2|ZC3H3_HUMAN Zinc finger CCCH domain-containing protein 3 OS=Homo sapiens
GN=ZC3H3 PE=1 SV=3
Length = 948
Score = 38.5 bits (88), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 13/66 (19%)
Query: 857 PLCMYELRGKCNNDECPWQHVKYFADRNKNLHDDSDSAGCQIGSTIPQEHCNVGTKLSKG 916
P+C Y L+G C+N CP+ HV + R + D + +C +G K K
Sbjct: 727 PVCSYFLKGICSNSNCPYSHV--YVSRKAEVCSD-----------FLKGYCPLGAKCKKK 773
Query: 917 HDILTP 922
H +L P
Sbjct: 774 HTLLCP 779
>sp|Q3ED78|C3H7_ARATH Zinc finger CCCH domain-containing protein 7 OS=Arabidopsis
thaliana GN=At1g21570 PE=1 SV=1
Length = 470
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 817 NSDKTQACYLIANSKPDIVKGYVGKEMGSYTCNLA---IDPLWPLCMYELRGKCNNDECP 873
N D + Y+ SK + ++ + C L I P C Y L+G CNN+ CP
Sbjct: 256 NKDDGKCPYVHDPSKIAVCTKFLNGLCANANCKLTHKVIPERMPDCSYYLQGLCNNEACP 315
Query: 874 WQHV 877
++HV
Sbjct: 316 YRHV 319
>sp|O74823|YBJC_SCHPO Zinc finger CCCH domain-containing protein C337.12
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC337.12 PE=4 SV=3
Length = 376
Score = 36.6 bits (83), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 848 CNLA--IDPL-WPLCMYELRGKCNNDECPWQHVKYFADRNKNLHDDSDSAGCQIGSTIPQ 904
CNL+ +DP P C Y L GKCNN C + H+ Y ++ + + C++G++
Sbjct: 249 CNLSHELDPRRIPACRYFLLGKCNNPNCRYVHIHY-SENAPICFEFAKYGFCELGTSCKN 307
Query: 905 EH 906
+H
Sbjct: 308 QH 309
>sp|P31491|YERA_YERPE YopE regulator OS=Yersinia pestis GN=yerA PE=1 SV=1
Length = 130
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 821 TQACYLIANSKPDIVKGYVGKEMGSYTCNLAIDPLWPLCMYELRGKCNNDE 871
TQ ++ S PD ++ +G ++G + C++ P+ + M+ L NNDE
Sbjct: 9 TQLFQQLSLSIPDTIEPVIGVKVGEFACHITEHPVGQILMFTLPSLDNNDE 59
>sp|Q12381|PRP1_SCHPO Pre-mRNA-splicing factor prp1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=prp1 PE=1 SV=1
Length = 906
Score = 34.3 bits (77), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 1028 KLEGMKKAL-SLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYAL 1086
KL G +++ S+L +A+E+ P +EILW+ Y + + G ++ + ++N S +
Sbjct: 555 KLYGTTESVCSILEKAVESCPKAEILWLLYAKERKNVNDIAGARNILGRAFEYNSNSEEI 614
Query: 1087 WLMYI 1091
WL +
Sbjct: 615 WLAAV 619
>sp|P31539|HS104_YEAST Heat shock protein 104 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=HSP104 PE=1 SV=2
Length = 908
Score = 34.3 bits (77), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 1196 YRKLPDAVLQLLE--CEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEK 1253
YR+LPD+ L L++ C A D P +L D K+R ++LI++ + ++E + +S K
Sbjct: 385 YRRLPDSALDLVDISCAGVAVARDSKPEEL--DSKERQLQLIQVEIKALERDEDADSTTK 442
Query: 1254 E 1254
+
Sbjct: 443 D 443
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 617,741,825
Number of Sequences: 539616
Number of extensions: 26387478
Number of successful extensions: 72825
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 89
Number of HSP's that attempted gapping in prelim test: 72363
Number of HSP's gapped (non-prelim): 566
length of query: 1670
length of database: 191,569,459
effective HSP length: 131
effective length of query: 1539
effective length of database: 120,879,763
effective search space: 186033955257
effective search space used: 186033955257
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 68 (30.8 bits)