Query 000322
Match_columns 1670
No_of_seqs 113 out of 120
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 04:18:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000322.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000322hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4839 Uncharacterized conser 100.0 2.7E-71 5.9E-76 642.6 8.8 708 44-966 14-752 (753)
2 KOG4839 Uncharacterized conser 100.0 2.2E-41 4.8E-46 394.3 12.3 567 841-1453 38-671 (753)
3 KOG0495 HAT repeat protein [RN 99.9 4.2E-24 9E-29 253.9 30.2 321 1029-1457 529-866 (913)
4 TIGR02917 PEP_TPR_lipo putativ 99.9 7E-19 1.5E-23 211.9 42.0 379 1010-1439 21-430 (899)
5 TIGR02917 PEP_TPR_lipo putativ 99.9 1.3E-17 2.7E-22 201.1 46.8 412 1030-1493 275-726 (899)
6 PRK11447 cellulose synthase su 99.8 5E-15 1.1E-19 193.5 46.9 589 988-1662 32-734 (1157)
7 PRK09782 bacteriophage N4 rece 99.7 1.3E-14 2.9E-19 186.7 40.9 293 1030-1360 58-404 (987)
8 PRK11447 cellulose synthase su 99.7 7.5E-15 1.6E-19 191.9 29.5 359 1029-1434 282-739 (1157)
9 KOG0495 HAT repeat protein [RN 99.6 1.6E-13 3.4E-18 165.1 31.8 406 921-1439 256-684 (913)
10 TIGR00990 3a0801s09 mitochondr 99.6 1.4E-13 3E-18 168.7 29.5 78 1028-1114 139-220 (615)
11 PRK15174 Vi polysaccharide exp 99.6 3.9E-13 8.4E-18 167.2 31.5 302 1030-1454 90-403 (656)
12 PRK10049 pgaA outer membrane p 99.6 3.1E-13 6.8E-18 170.3 30.7 353 1030-1467 29-451 (765)
13 TIGR00990 3a0801s09 mitochondr 99.5 2.6E-12 5.7E-17 157.6 30.6 352 1010-1450 159-584 (615)
14 PRK10049 pgaA outer membrane p 99.5 6.7E-12 1.4E-16 158.5 34.6 358 1007-1439 45-460 (765)
15 PRK15174 Vi polysaccharide exp 99.5 3.7E-12 8.1E-17 158.5 28.7 182 1004-1238 103-291 (656)
16 PRK11788 tetratricopeptide rep 99.5 1.9E-11 4.2E-16 139.2 27.3 296 1012-1363 36-349 (389)
17 PRK14574 hmsH outer membrane p 99.4 2E-10 4.4E-15 146.4 32.7 380 1030-1464 48-471 (822)
18 KOG4626 O-linked N-acetylgluco 99.3 6.8E-11 1.5E-15 142.2 21.8 381 1029-1487 129-534 (966)
19 KOG1915 Cell cycle control pro 99.3 9.7E-09 2.1E-13 121.8 38.7 471 1002-1651 64-552 (677)
20 PRK09782 bacteriophage N4 rece 99.3 6.4E-10 1.4E-14 144.2 30.7 187 1276-1493 491-700 (987)
21 PF13429 TPR_15: Tetratricopep 99.3 1.7E-12 3.7E-17 143.7 6.0 260 1013-1360 10-276 (280)
22 KOG2002 TPR-containing nuclear 99.3 1.2E-09 2.7E-14 136.9 29.6 463 1008-1564 230-757 (1018)
23 PRK11788 tetratricopeptide rep 99.2 1E-09 2.2E-14 125.3 23.2 274 1005-1329 63-353 (389)
24 PRK14720 transcript cleavage f 99.2 6.9E-11 1.5E-15 150.3 10.8 145 1320-1478 23-182 (906)
25 KOG2076 RNA polymerase III tra 99.2 5.3E-08 1.2E-12 122.1 35.3 574 1010-1640 138-855 (895)
26 PRK10747 putative protoheme IX 99.1 1.9E-08 4.1E-13 118.6 29.2 288 1029-1436 97-391 (398)
27 PRK14574 hmsH outer membrane p 99.1 5.1E-09 1.1E-13 133.8 26.2 318 1012-1357 103-509 (822)
28 KOG1915 Cell cycle control pro 99.1 2.7E-08 5.9E-13 118.1 29.5 460 1007-1540 103-630 (677)
29 PF13429 TPR_15: Tetratricopep 99.1 8.4E-10 1.8E-14 122.6 13.6 153 1268-1467 117-272 (280)
30 KOG4626 O-linked N-acetylgluco 99.1 1.2E-09 2.6E-14 131.9 14.6 322 1003-1356 142-517 (966)
31 KOG2002 TPR-containing nuclear 99.0 1.9E-08 4.1E-13 126.7 22.8 358 1001-1478 154-532 (1018)
32 PLN03081 pentatricopeptide (PP 99.0 6.7E-08 1.5E-12 120.9 27.9 387 1013-1467 89-518 (697)
33 PRK12370 invasion protein regu 99.0 2E-08 4.4E-13 123.1 22.4 220 1028-1329 273-511 (553)
34 TIGR00540 hemY_coli hemY prote 99.0 1.6E-08 3.6E-13 119.3 20.5 299 1006-1360 67-398 (409)
35 PLN03077 Protein ECB2; Provisi 99.0 1.1E-07 2.4E-12 121.5 28.9 406 1010-1487 252-706 (857)
36 KOG0547 Translocase of outer m 98.8 3.9E-07 8.6E-12 109.1 23.4 276 1012-1448 277-577 (606)
37 PF08424 NRDE-2: NRDE-2, neces 98.8 4.2E-08 9.1E-13 113.5 14.5 156 1003-1158 11-182 (321)
38 TIGR02521 type_IV_pilW type IV 98.8 9.8E-07 2.1E-11 90.3 22.6 130 1009-1158 29-163 (234)
39 PRK12370 invasion protein regu 98.8 1.2E-07 2.6E-12 116.5 16.9 192 1003-1243 287-486 (553)
40 PLN03218 maturation of RBCL 1; 98.8 4E-06 8.6E-11 110.5 31.2 272 1030-1357 451-744 (1060)
41 PF10650 zf-C3H1: Putative zin 98.7 2.4E-09 5.2E-14 80.6 0.9 22 857-878 1-23 (23)
42 PLN03081 pentatricopeptide (PP 98.7 4.7E-06 1E-10 104.7 29.2 338 1010-1435 188-557 (697)
43 KOG0624 dsRNA-activated protei 98.7 1E-06 2.2E-11 102.3 20.4 355 1008-1439 35-426 (504)
44 KOG0547 Translocase of outer m 98.7 3.3E-06 7.1E-11 101.5 24.8 144 1274-1439 339-495 (606)
45 TIGR00540 hemY_coli hemY prote 98.7 3.9E-06 8.4E-11 99.5 25.1 286 1059-1436 93-400 (409)
46 PLN03218 maturation of RBCL 1; 98.7 1.3E-05 2.8E-10 105.8 32.1 339 1030-1445 420-795 (1060)
47 PRK11189 lipoprotein NlpI; Pro 98.6 9.3E-06 2E-10 92.7 24.7 123 1011-1155 64-190 (296)
48 PRK11189 lipoprotein NlpI; Pro 98.6 1.7E-06 3.7E-11 98.6 18.5 114 1029-1158 39-160 (296)
49 KOG2076 RNA polymerase III tra 98.6 2.5E-05 5.4E-10 99.0 29.4 373 1010-1437 413-851 (895)
50 PLN03077 Protein ECB2; Provisi 98.6 9.7E-06 2.1E-10 104.1 26.1 347 1029-1467 336-715 (857)
51 COG2956 Predicted N-acetylgluc 98.5 4.7E-06 1E-10 96.6 19.8 255 1032-1345 51-328 (389)
52 KOG1070 rRNA processing protei 98.5 3.5E-06 7.5E-11 109.4 20.2 241 1038-1363 1446-1705(1710)
53 TIGR02521 type_IV_pilW type IV 98.5 3E-06 6.5E-11 86.8 15.7 133 1005-1158 59-197 (234)
54 PRK10370 formate-dependent nit 98.5 1.4E-06 3E-11 94.7 13.7 122 1028-1158 51-172 (198)
55 PRK10747 putative protoheme IX 98.5 1.8E-05 4E-10 93.8 23.8 250 1029-1357 131-386 (398)
56 KOG1126 DNA-binding cell divis 98.4 1E-06 2.2E-11 108.5 12.6 216 1034-1329 404-626 (638)
57 KOG2047 mRNA splicing factor [ 98.4 0.00022 4.7E-09 88.4 31.6 136 1012-1153 103-271 (835)
58 COG3063 PilF Tfp pilus assembl 98.4 2.6E-05 5.6E-10 87.5 21.6 203 1012-1297 36-243 (250)
59 KOG1156 N-terminal acetyltrans 98.4 7.2E-05 1.6E-09 92.6 26.6 113 1030-1158 21-137 (700)
60 COG2956 Predicted N-acetylgluc 98.4 2.7E-05 5.9E-10 90.5 20.7 259 1070-1456 26-297 (389)
61 KOG0624 dsRNA-activated protei 98.4 8.3E-06 1.8E-10 95.0 16.0 308 1004-1379 65-418 (504)
62 KOG1126 DNA-binding cell divis 98.3 2.5E-05 5.4E-10 96.7 20.7 291 1030-1439 333-624 (638)
63 KOG4162 Predicted calmodulin-b 98.3 0.00011 2.3E-09 92.5 25.2 343 989-1355 327-777 (799)
64 TIGR02552 LcrH_SycD type III s 98.3 6.3E-06 1.4E-10 81.5 11.9 106 1037-1158 4-113 (135)
65 PRK10370 formate-dependent nit 98.3 7.7E-06 1.7E-10 89.0 12.5 107 1002-1121 64-177 (198)
66 PRK15359 type III secretion sy 98.2 1E-05 2.2E-10 83.6 11.3 103 1037-1158 14-120 (144)
67 TIGR03302 OM_YfiO outer membra 98.2 3.5E-05 7.6E-10 83.4 15.9 145 1008-1158 30-194 (235)
68 PRK14720 transcript cleavage f 98.1 9.1E-05 2E-09 96.0 19.3 269 1078-1455 25-307 (906)
69 TIGR03302 OM_YfiO outer membra 98.1 5.3E-05 1.2E-09 82.0 13.7 128 1012-1157 71-230 (235)
70 KOG1127 TPR repeat-containing 98.0 0.00032 6.9E-09 89.9 21.5 124 1012-1151 563-692 (1238)
71 PF13414 TPR_11: TPR repeat; P 98.0 1.4E-05 3.1E-10 71.3 7.2 67 1010-1081 2-69 (69)
72 cd05804 StaR_like StaR_like; a 98.0 0.0047 1E-07 70.6 28.8 321 1008-1436 3-337 (355)
73 COG3071 HemY Uncharacterized e 98.0 0.0035 7.6E-08 75.0 28.2 312 1006-1435 67-390 (400)
74 PLN02789 farnesyltranstransfer 98.0 0.00021 4.6E-09 83.6 18.3 115 1030-1158 51-170 (320)
75 KOG1156 N-terminal acetyltrans 98.0 0.00048 1E-08 85.6 21.6 304 1027-1358 52-465 (700)
76 KOG2376 Signal recognition par 98.0 0.0019 4.2E-08 79.9 26.4 314 1027-1357 121-483 (652)
77 TIGR02552 LcrH_SycD type III s 98.0 7.8E-05 1.7E-09 73.8 12.1 104 1004-1121 10-117 (135)
78 PF12569 NARP1: NMDA receptor- 97.9 0.00035 7.6E-09 86.6 19.6 362 1130-1651 4-391 (517)
79 cd05804 StaR_like StaR_like; a 97.9 0.0024 5.2E-08 72.9 23.6 128 1010-1158 42-176 (355)
80 PRK15359 type III secretion sy 97.9 9.3E-05 2E-09 76.6 10.9 95 1014-1122 27-125 (144)
81 KOG2376 Signal recognition par 97.9 0.0026 5.7E-08 78.8 24.3 384 1045-1486 105-542 (652)
82 KOG1174 Anaphase-promoting com 97.8 0.0015 3.3E-08 78.2 21.5 289 1032-1447 214-510 (564)
83 KOG1155 Anaphase-promoting com 97.8 0.0016 3.5E-08 78.9 21.5 134 1268-1435 336-495 (559)
84 PLN03088 SGT1, suppressor of 97.8 0.00019 4.2E-09 84.6 13.6 95 1014-1121 5-103 (356)
85 KOG1070 rRNA processing protei 97.8 0.00094 2E-08 88.0 20.4 230 1070-1376 1444-1693(1710)
86 KOG1155 Anaphase-promoting com 97.8 0.00027 5.9E-09 85.3 14.5 141 1030-1189 344-488 (559)
87 KOG0553 TPR repeat-containing 97.8 0.00011 2.4E-09 84.9 10.7 100 1013-1122 76-182 (304)
88 PF12569 NARP1: NMDA receptor- 97.8 0.0023 5E-08 79.6 22.5 87 1268-1358 200-288 (517)
89 PRK15179 Vi polysaccharide bio 97.8 0.00034 7.4E-09 89.3 15.7 114 1029-1158 99-216 (694)
90 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.00025 5.5E-09 85.3 12.9 109 1030-1157 183-295 (395)
91 cd00189 TPR Tetratricopeptide 97.7 0.00028 6E-09 60.7 9.4 93 1013-1118 2-98 (100)
92 KOG2047 mRNA splicing factor [ 97.7 0.0063 1.4E-07 76.1 23.9 110 1039-1158 16-130 (835)
93 PF13432 TPR_16: Tetratricopep 97.7 0.0001 2.2E-09 65.4 6.6 63 1016-1083 2-64 (65)
94 KOG1173 Anaphase-promoting com 97.7 0.0087 1.9E-07 74.1 24.7 284 1010-1345 243-535 (611)
95 KOG1125 TPR repeat-containing 97.7 0.0013 2.9E-08 81.1 17.7 239 1004-1355 312-565 (579)
96 PF05843 Suf: Suppressor of fo 97.6 0.0003 6.5E-09 80.5 11.5 120 1030-1158 15-135 (280)
97 COG4235 Cytochrome c biogenesi 97.6 0.00034 7.5E-09 80.9 11.9 107 1002-1121 147-260 (287)
98 KOG1258 mRNA processing protei 97.6 0.036 7.8E-07 69.4 28.9 86 1028-1117 91-180 (577)
99 PLN02789 farnesyltranstransfer 97.6 0.0063 1.4E-07 71.6 21.1 247 1265-1572 40-303 (320)
100 COG3063 PilF Tfp pilus assembl 97.5 0.00088 1.9E-08 75.7 12.3 134 1003-1158 61-201 (250)
101 PF14559 TPR_19: Tetratricopep 97.5 0.00022 4.7E-09 63.4 6.0 63 1029-1091 4-66 (68)
102 KOG1840 Kinesin light chain [C 97.5 0.012 2.6E-07 73.3 22.6 262 1012-1357 200-475 (508)
103 COG4235 Cytochrome c biogenesi 97.5 0.00095 2.1E-08 77.4 12.2 114 1030-1158 136-255 (287)
104 PF09976 TPR_21: Tetratricopep 97.4 0.0017 3.7E-08 66.8 12.7 117 1274-1433 24-145 (145)
105 KOG1125 TPR repeat-containing 97.4 0.0011 2.3E-08 81.9 13.0 183 1263-1467 287-486 (579)
106 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.0012 2.6E-08 62.9 10.8 96 1011-1119 2-107 (119)
107 cd00189 TPR Tetratricopeptide 97.4 0.0014 3E-08 56.4 10.0 91 1052-1158 2-96 (100)
108 KOG0550 Molecular chaperone (D 97.4 0.003 6.6E-08 75.9 15.1 291 1027-1449 60-364 (486)
109 KOG1840 Kinesin light chain [C 97.3 0.0064 1.4E-07 75.6 18.4 244 1129-1437 198-481 (508)
110 KOG1173 Anaphase-promoting com 97.3 0.0034 7.3E-08 77.6 15.0 226 1003-1306 303-535 (611)
111 PF05843 Suf: Suppressor of fo 97.2 0.001 2.2E-08 76.2 9.4 140 1266-1448 6-150 (280)
112 PRK15179 Vi polysaccharide bio 97.2 0.0028 6.1E-08 81.2 14.0 178 1276-1478 67-268 (694)
113 COG4783 Putative Zn-dependent 97.2 0.0027 5.8E-08 77.5 12.4 134 1012-1164 307-440 (484)
114 PRK10803 tol-pal system protei 97.2 0.0037 8E-08 71.7 12.9 98 1010-1121 141-249 (263)
115 KOG4162 Predicted calmodulin-b 97.2 0.023 4.9E-07 72.5 20.4 328 980-1329 403-789 (799)
116 PRK11906 transcriptional regul 97.1 0.0088 1.9E-07 73.2 15.5 134 1008-1157 245-399 (458)
117 PF12895 Apc3: Anaphase-promot 97.1 0.00075 1.6E-08 63.2 4.9 76 1029-1113 2-83 (84)
118 PF13371 TPR_9: Tetratricopept 97.0 0.0019 4.2E-08 58.2 7.0 59 1030-1088 9-67 (73)
119 KOG0128 RNA-binding protein SA 97.0 0.038 8.1E-07 71.1 20.1 345 1008-1377 144-538 (881)
120 KOG2003 TPR repeat-containing 97.0 0.034 7.4E-07 67.4 18.3 159 1008-1186 416-577 (840)
121 TIGR02795 tol_pal_ybgF tol-pal 96.9 0.009 2E-07 57.0 11.0 96 1050-1158 2-104 (119)
122 PRK02603 photosystem I assembl 96.9 0.012 2.6E-07 62.1 12.6 106 1008-1118 32-150 (172)
123 CHL00033 ycf3 photosystem I as 96.8 0.014 3E-07 61.3 12.6 109 1005-1118 27-150 (168)
124 KOG0553 TPR repeat-containing 96.8 0.0057 1.2E-07 71.3 10.3 99 1261-1439 82-182 (304)
125 KOG2003 TPR repeat-containing 96.8 0.0083 1.8E-07 72.4 11.7 112 1030-1157 572-687 (840)
126 PLN03088 SGT1, suppressor of 96.8 0.0042 9.2E-08 73.5 9.3 79 1003-1086 28-106 (356)
127 PF09295 ChAPs: ChAPs (Chs5p-A 96.8 0.0055 1.2E-07 74.2 10.2 93 1012-1117 201-297 (395)
128 PF09976 TPR_21: Tetratricopep 96.7 0.021 4.5E-07 58.9 12.8 107 1030-1153 25-141 (145)
129 KOG1258 mRNA processing protei 96.7 3.2 7E-05 52.9 36.0 122 1029-1158 58-179 (577)
130 PF14938 SNAP: Soluble NSF att 96.7 0.28 6.2E-06 56.3 22.6 242 1010-1357 2-259 (282)
131 PRK04841 transcriptional regul 96.7 1.1 2.3E-05 58.6 30.1 317 1030-1442 423-767 (903)
132 PRK15363 pathogenicity island 96.5 0.021 4.5E-07 61.7 11.4 104 1039-1158 23-131 (157)
133 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.0055 1.2E-07 74.8 7.9 75 1005-1084 69-146 (453)
134 PRK10866 outer membrane biogen 96.5 0.041 8.9E-07 62.4 14.3 144 1009-1158 30-203 (243)
135 PRK10803 tol-pal system protei 96.5 0.019 4.1E-07 66.0 11.9 97 1049-1158 141-245 (263)
136 PF14938 SNAP: Soluble NSF att 96.5 0.0076 1.6E-07 68.9 8.6 143 1029-1183 55-212 (282)
137 PRK10153 DNA-binding transcrip 96.4 0.04 8.6E-07 68.9 14.9 123 1017-1158 345-481 (517)
138 KOG1914 mRNA cleavage and poly 96.4 0.31 6.6E-06 61.0 21.4 92 1271-1365 411-505 (656)
139 PRK02603 photosystem I assembl 96.3 0.033 7.2E-07 58.9 11.3 94 1036-1145 19-121 (172)
140 KOG3785 Uncharacterized conser 96.3 0.041 8.9E-07 65.5 12.6 124 1003-1158 50-179 (557)
141 PF04733 Coatomer_E: Coatomer 96.3 0.039 8.4E-07 64.3 12.5 225 1103-1357 16-261 (290)
142 KOG1174 Anaphase-promoting com 96.2 0.26 5.5E-06 60.2 18.8 292 1049-1457 160-453 (564)
143 KOG1128 Uncharacterized conser 96.2 0.059 1.3E-06 68.7 14.1 178 1130-1357 424-612 (777)
144 KOG0548 Molecular co-chaperone 96.2 0.13 2.8E-06 64.0 16.7 98 1027-1140 13-114 (539)
145 CHL00033 ycf3 photosystem I as 96.2 0.04 8.6E-07 57.9 10.9 106 1032-1153 15-136 (168)
146 PF13414 TPR_11: TPR repeat; P 96.2 0.015 3.2E-07 52.1 6.6 64 1048-1118 1-68 (69)
147 PRK15363 pathogenicity island 96.1 0.019 4.1E-07 62.0 8.4 92 1012-1116 36-131 (157)
148 PF12895 Apc3: Anaphase-promot 96.1 0.015 3.3E-07 54.5 6.8 75 1064-1155 3-83 (84)
149 KOG1914 mRNA cleavage and poly 96.1 6.6 0.00014 50.0 30.6 388 1003-1472 12-461 (656)
150 KOG3617 WD40 and TPR repeat-co 96.1 0.6 1.3E-05 60.5 22.1 361 1022-1432 733-1171(1416)
151 PF13432 TPR_16: Tetratricopep 96.1 0.0075 1.6E-07 53.6 4.4 60 1268-1328 4-65 (65)
152 PRK11906 transcriptional regul 96.0 0.041 8.8E-07 67.6 11.4 94 1030-1139 352-452 (458)
153 COG5010 TadD Flp pilus assembl 96.0 0.061 1.3E-06 62.0 11.9 108 1030-1153 114-225 (257)
154 KOG1127 TPR repeat-containing 95.9 1 2.2E-05 59.7 23.0 111 1032-1158 474-624 (1238)
155 KOG1128 Uncharacterized conser 95.8 0.032 6.9E-07 71.0 9.7 130 1018-1163 487-620 (777)
156 KOG3785 Uncharacterized conser 95.7 0.2 4.2E-06 60.1 14.8 234 1086-1357 63-310 (557)
157 PF13428 TPR_14: Tetratricopep 95.6 0.021 4.5E-07 48.4 4.9 42 1012-1058 2-43 (44)
158 KOG1129 TPR repeat-containing 95.6 0.2 4.4E-06 59.6 14.3 229 1086-1438 229-461 (478)
159 PF13525 YfiO: Outer membrane 95.5 0.14 3E-06 56.2 12.2 142 1011-1158 5-169 (203)
160 PF14559 TPR_19: Tetratricopep 95.5 0.038 8.2E-07 49.2 6.4 48 1103-1158 6-53 (68)
161 COG5010 TadD Flp pilus assembl 95.3 0.15 3.2E-06 59.0 11.8 140 1278-1464 50-189 (257)
162 PRK15331 chaperone protein Sic 95.3 0.12 2.6E-06 56.4 10.6 118 1009-1153 7-128 (165)
163 KOG3060 Uncharacterized conser 95.2 0.73 1.6E-05 53.7 16.8 181 1226-1439 26-224 (289)
164 PF13428 TPR_14: Tetratricopep 95.1 0.035 7.6E-07 47.0 4.8 43 1050-1092 1-43 (44)
165 PF13525 YfiO: Outer membrane 95.1 0.25 5.5E-06 54.2 12.5 129 1003-1149 34-197 (203)
166 PF13431 TPR_17: Tetratricopep 94.8 0.023 5E-07 46.5 2.7 32 1038-1069 1-32 (34)
167 KOG0550 Molecular chaperone (D 94.5 0.35 7.5E-06 59.1 12.5 185 1030-1308 183-369 (486)
168 PRK10866 outer membrane biogen 94.5 0.92 2E-05 51.8 15.3 129 1012-1158 70-240 (243)
169 PLN03098 LPA1 LOW PSII ACCUMUL 94.2 0.11 2.4E-06 64.0 7.7 66 1044-1117 69-141 (453)
170 PF07719 TPR_2: Tetratricopept 94.0 0.081 1.8E-06 41.3 4.0 34 1050-1083 1-34 (34)
171 PF13371 TPR_9: Tetratricopept 93.8 0.19 4.2E-06 45.3 6.7 57 1057-1122 2-62 (73)
172 KOG0543 FKBP-type peptidyl-pro 93.6 0.53 1.2E-05 57.4 11.8 92 1265-1364 261-354 (397)
173 PF08424 NRDE-2: NRDE-2, neces 93.6 0.64 1.4E-05 54.9 12.2 134 1278-1437 48-185 (321)
174 KOG0548 Molecular co-chaperone 93.5 0.41 9E-06 59.8 10.8 87 1027-1122 369-459 (539)
175 PF12688 TPR_5: Tetratrico pep 93.5 0.57 1.2E-05 48.6 10.2 90 1051-1153 2-98 (120)
176 PRK10153 DNA-binding transcrip 93.4 1.1 2.3E-05 56.6 14.5 129 1003-1150 368-505 (517)
177 KOG1129 TPR repeat-containing 93.4 0.8 1.7E-05 54.8 12.4 128 1009-1161 256-389 (478)
178 PF04733 Coatomer_E: Coatomer 93.3 0.21 4.6E-06 58.3 7.7 109 1030-1157 116-228 (290)
179 PF00515 TPR_1: Tetratricopept 93.2 0.1 2.2E-06 41.3 3.4 34 1050-1083 1-34 (34)
180 KOG4642 Chaperone-dependent E3 93.1 0.54 1.2E-05 54.4 10.2 105 1028-1143 22-130 (284)
181 COG4783 Putative Zn-dependent 93.1 6 0.00013 49.6 19.5 101 1042-1158 298-402 (484)
182 COG5107 RNA14 Pre-mRNA 3'-end 93.0 2.6 5.6E-05 52.4 16.0 90 1273-1364 444-534 (660)
183 PRK04841 transcriptional regul 92.5 4.5 9.8E-05 53.0 18.8 120 1029-1158 465-601 (903)
184 COG0457 NrfG FOG: TPR repeat [ 92.3 2.8 6E-05 40.6 12.5 115 1029-1158 108-230 (291)
185 PF07719 TPR_2: Tetratricopept 92.3 0.24 5.1E-06 38.7 4.3 30 1408-1439 5-34 (34)
186 COG4785 NlpI Lipoprotein NlpI, 92.1 0.54 1.2E-05 53.8 8.4 117 1028-1151 111-258 (297)
187 smart00386 HAT HAT (Half-A-TPR 91.9 0.16 3.5E-06 38.7 2.9 27 1624-1650 6-32 (33)
188 KOG0128 RNA-binding protein SA 91.8 8.7 0.00019 50.8 19.3 274 1033-1339 96-388 (881)
189 KOG2300 Uncharacterized conser 91.7 48 0.001 42.3 25.6 131 1012-1158 47-198 (629)
190 PF13181 TPR_8: Tetratricopept 91.4 0.2 4.4E-06 39.4 3.1 34 1050-1083 1-34 (34)
191 KOG2396 HAT (Half-A-TPR) repea 91.3 0.51 1.1E-05 58.8 7.7 84 1008-1096 102-186 (568)
192 PF06552 TOM20_plant: Plant sp 91.2 0.4 8.7E-06 53.3 6.2 83 1003-1085 17-115 (186)
193 PF00515 TPR_1: Tetratricopept 91.1 0.3 6.6E-06 38.6 3.8 31 1407-1439 4-34 (34)
194 PF12688 TPR_5: Tetratrico pep 91.1 1.7 3.6E-05 45.3 10.2 80 1029-1116 14-103 (120)
195 PF13181 TPR_8: Tetratricopept 90.9 0.38 8.1E-06 37.9 4.2 31 1407-1439 4-34 (34)
196 PF13431 TPR_17: Tetratricopep 90.9 0.22 4.8E-06 40.8 2.9 33 1317-1353 2-34 (34)
197 KOG3060 Uncharacterized conser 90.3 11 0.00024 44.5 16.6 112 1030-1158 66-182 (289)
198 KOG2053 Mitochondrial inherita 90.3 37 0.00079 45.7 22.8 106 1028-1151 21-131 (932)
199 COG5191 Uncharacterized conser 90.2 0.24 5.1E-06 58.7 3.5 65 1276-1344 122-188 (435)
200 KOG3081 Vesicle coat complex C 89.9 6.7 0.00015 46.4 14.5 218 1103-1349 23-258 (299)
201 COG1729 Uncharacterized protei 89.9 2.1 4.5E-05 50.2 10.6 93 1053-1158 144-243 (262)
202 KOG3617 WD40 and TPR repeat-co 89.8 20 0.00042 47.7 19.5 214 1008-1222 808-1063(1416)
203 COG0457 NrfG FOG: TPR repeat [ 89.5 6.2 0.00013 38.2 12.0 117 1029-1158 72-195 (291)
204 KOG0543 FKBP-type peptidyl-pro 89.3 1.8 4E-05 52.9 10.0 88 1027-1118 268-356 (397)
205 KOG3824 Huntingtin interacting 88.6 0.51 1.1E-05 56.0 4.6 58 1028-1085 128-185 (472)
206 KOG4234 TPR repeat-containing 88.4 3.9 8.5E-05 46.7 11.0 113 1001-1122 76-201 (271)
207 PRK15331 chaperone protein Sic 88.2 1.4 3.1E-05 48.4 7.5 93 1012-1117 38-134 (165)
208 KOG1586 Protein required for f 88.2 23 0.0005 41.7 17.0 119 1229-1357 131-258 (288)
209 smart00386 HAT HAT (Half-A-TPR 88.1 0.83 1.8E-05 34.8 4.1 30 1031-1060 2-31 (33)
210 KOG4555 TPR repeat-containing 87.9 2.2 4.8E-05 46.0 8.3 81 1029-1117 56-144 (175)
211 COG2976 Uncharacterized protei 87.9 2.5 5.4E-05 47.9 9.2 107 1312-1439 70-192 (207)
212 COG5191 Uncharacterized conser 87.2 0.63 1.4E-05 55.3 4.3 82 1008-1094 104-186 (435)
213 COG4105 ComL DNA uptake lipopr 86.9 73 0.0016 37.8 20.3 186 1088-1329 42-238 (254)
214 KOG3081 Vesicle coat complex C 86.8 36 0.00078 40.7 17.8 57 1272-1329 218-277 (299)
215 PF13424 TPR_12: Tetratricopep 86.7 0.57 1.2E-05 43.1 2.9 63 1013-1080 7-76 (78)
216 PF13512 TPR_18: Tetratricopep 86.3 6.2 0.00013 42.7 10.7 51 1103-1158 25-75 (142)
217 PF03704 BTAD: Bacterial trans 85.7 2.7 5.9E-05 43.2 7.5 49 1029-1077 75-123 (146)
218 PF02259 FAT: FAT domain; Int 85.2 57 0.0012 37.7 18.6 156 1290-1454 141-304 (352)
219 PF13424 TPR_12: Tetratricopep 84.9 1.8 4E-05 39.7 5.3 62 1047-1116 2-74 (78)
220 PF10300 DUF3808: Protein of u 84.8 8.2 0.00018 48.3 12.4 113 1029-1158 246-375 (468)
221 PF03704 BTAD: Bacterial trans 84.4 8.1 0.00018 39.7 10.3 98 1031-1158 21-124 (146)
222 KOG0376 Serine-threonine phosp 82.3 2.9 6.3E-05 52.2 7.0 91 1027-1122 15-105 (476)
223 PF10345 Cohesin_load: Cohesin 81.9 1.7E+02 0.0038 37.9 24.3 99 1049-1158 58-167 (608)
224 KOG2053 Mitochondrial inherita 81.8 1.3E+02 0.0029 40.9 21.4 289 1030-1357 240-566 (932)
225 PF04184 ST7: ST7 protein; In 81.2 4.5 9.7E-05 51.0 8.1 112 1033-1157 185-322 (539)
226 COG3071 HemY Uncharacterized e 80.5 1.7E+02 0.0036 36.8 21.9 83 1027-1118 129-217 (400)
227 COG1729 Uncharacterized protei 80.4 6.3 0.00014 46.3 8.5 101 1014-1121 144-247 (262)
228 COG5107 RNA14 Pre-mRNA 3'-end 79.7 77 0.0017 40.4 17.3 167 1038-1243 30-206 (660)
229 KOG2396 HAT (Half-A-TPR) repea 78.8 10 0.00023 47.9 10.0 100 1033-1143 88-187 (568)
230 smart00028 TPR Tetratricopepti 78.8 3.5 7.7E-05 29.1 3.9 29 1408-1438 5-33 (34)
231 KOG1492 C3H1-type Zn-finger pr 77.5 0.89 1.9E-05 51.4 0.6 34 845-878 249-283 (377)
232 PF10345 Cohesin_load: Cohesin 76.9 2.4E+02 0.0052 36.7 29.4 133 1009-1158 57-207 (608)
233 PF10300 DUF3808: Protein of u 76.1 6.5 0.00014 49.2 7.5 103 1276-1379 248-373 (468)
234 PF08631 SPO22: Meiosis protei 75.9 43 0.00093 39.0 13.6 93 1226-1325 50-152 (278)
235 PF04910 Tcf25: Transcriptiona 75.9 7.8 0.00017 47.1 7.9 130 1103-1244 9-150 (360)
236 KOG4648 Uncharacterized conser 75.3 4.3 9.3E-05 49.2 5.3 107 1199-1341 102-208 (536)
237 PF02259 FAT: FAT domain; Int 74.4 1E+02 0.0023 35.6 16.2 188 1029-1243 101-303 (352)
238 KOG1308 Hsp70-interacting prot 74.2 1.5 3.2E-05 52.9 1.3 136 1226-1382 89-226 (377)
239 KOG1308 Hsp70-interacting prot 73.8 1.8 3.8E-05 52.4 1.8 117 1027-1151 125-243 (377)
240 KOG4648 Uncharacterized conser 72.9 5.1 0.00011 48.6 5.2 58 1027-1085 108-165 (536)
241 KOG4340 Uncharacterized conser 72.5 1.1E+02 0.0024 37.3 15.6 280 1031-1357 25-335 (459)
242 PF13512 TPR_18: Tetratricopep 72.4 32 0.00069 37.4 10.5 69 1012-1085 11-82 (142)
243 KOG2796 Uncharacterized conser 70.9 70 0.0015 38.5 13.4 165 1000-1197 155-338 (366)
244 COG3118 Thioredoxin domain-con 70.5 34 0.00073 41.3 11.0 114 1029-1158 147-264 (304)
245 COG4700 Uncharacterized protei 68.7 45 0.00099 38.3 11.0 130 1310-1464 72-215 (251)
246 smart00028 TPR Tetratricopepti 67.9 5.9 0.00013 28.0 2.9 32 1051-1082 2-33 (34)
247 PF13176 TPR_7: Tetratricopept 67.7 6.6 0.00014 32.3 3.3 28 1408-1437 3-30 (36)
248 PF13281 DUF4071: Domain of un 65.4 19 0.0004 44.5 7.9 127 1312-1478 158-295 (374)
249 PF08631 SPO22: Meiosis protei 65.4 2.8E+02 0.006 32.5 22.2 105 1029-1157 6-114 (278)
250 KOG1586 Protein required for f 65.2 54 0.0012 38.8 11.0 138 1012-1158 55-226 (288)
251 KOG3824 Huntingtin interacting 64.1 21 0.00046 43.1 7.8 92 1261-1362 116-208 (472)
252 PF06552 TOM20_plant: Plant sp 63.8 30 0.00065 39.2 8.4 81 1277-1357 7-98 (186)
253 PF08311 Mad3_BUB1_I: Mad3/BUB 63.1 92 0.002 32.8 11.5 100 1038-1153 7-122 (126)
254 KOG1941 Acetylcholine receptor 61.6 1.5E+02 0.0032 37.2 14.1 167 988-1184 54-243 (518)
255 smart00101 14_3_3 14-3-3 homol 61.2 36 0.00077 39.8 8.8 165 1274-1472 14-198 (244)
256 PF14561 TPR_20: Tetratricopep 60.0 18 0.00039 36.0 5.4 48 1035-1082 7-54 (90)
257 PRK10941 hypothetical protein; 59.9 29 0.00063 40.9 8.0 58 1028-1085 193-250 (269)
258 PF13174 TPR_6: Tetratricopept 59.8 9.1 0.0002 29.5 2.7 15 1033-1047 17-31 (33)
259 PF13281 DUF4071: Domain of un 59.5 1.2E+02 0.0027 37.7 13.3 182 1261-1454 141-354 (374)
260 KOG2610 Uncharacterized conser 58.5 32 0.00068 42.2 7.9 79 1029-1115 188-274 (491)
261 KOG4555 TPR repeat-containing 58.3 1.1E+02 0.0024 33.7 11.1 84 1274-1357 56-140 (175)
262 KOG1538 Uncharacterized conser 58.2 1.7E+02 0.0037 38.8 14.3 99 1284-1437 736-835 (1081)
263 PF11207 DUF2989: Protein of u 56.7 26 0.00056 40.1 6.6 72 991-1068 113-196 (203)
264 KOG3616 Selective LIM binding 55.4 48 0.001 43.8 9.1 184 1316-1526 465-684 (1636)
265 PF13174 TPR_6: Tetratricopept 54.1 17 0.00037 28.0 3.4 28 1131-1158 1-28 (33)
266 PF11207 DUF2989: Protein of u 53.4 76 0.0016 36.5 9.5 124 1006-1149 59-197 (203)
267 COG4785 NlpI Lipoprotein NlpI, 50.6 78 0.0017 37.3 9.0 97 1028-1140 77-179 (297)
268 PF09986 DUF2225: Uncharacteri 50.5 53 0.0012 37.5 7.9 70 1086-1158 124-193 (214)
269 COG4105 ComL DNA uptake lipopr 50.5 2E+02 0.0044 34.3 12.5 133 1007-1158 67-231 (254)
270 KOG2300 Uncharacterized conser 49.4 2.1E+02 0.0046 37.0 13.0 158 1258-1428 43-234 (629)
271 KOG3364 Membrane protein invol 48.3 43 0.00094 36.7 6.3 67 1086-1166 38-105 (149)
272 KOG1550 Extracellular protein 47.0 7.7E+02 0.017 32.0 21.1 129 1008-1151 241-385 (552)
273 COG1747 Uncharacterized N-term 44.8 4.9E+02 0.011 34.2 15.1 86 1268-1357 106-194 (711)
274 PF10602 RPN7: 26S proteasome 44.8 84 0.0018 34.8 8.1 60 1086-1158 42-101 (177)
275 COG3629 DnrI DNA-binding trans 44.6 1.6E+02 0.0034 35.5 10.7 57 1086-1158 159-215 (280)
276 PF09670 Cas_Cas02710: CRISPR- 44.5 2.3E+02 0.005 35.1 12.4 130 1012-1158 132-269 (379)
277 KOG2422 Uncharacterized conser 44.4 75 0.0016 41.4 8.4 133 1064-1244 252-389 (665)
278 PF14853 Fis1_TPR_C: Fis1 C-te 43.9 42 0.00091 30.8 4.7 33 1409-1445 6-38 (53)
279 KOG1464 COP9 signalosome, subu 43.3 3.5E+02 0.0076 33.0 12.9 92 1083-1183 25-120 (440)
280 PF12854 PPR_1: PPR repeat 43.0 33 0.00071 28.2 3.5 27 1130-1156 7-33 (34)
281 smart00299 CLH Clathrin heavy 42.9 1.9E+02 0.004 29.8 9.8 43 1031-1074 22-64 (140)
282 KOG0530 Protein farnesyltransf 42.4 73 0.0016 38.3 7.4 71 1015-1089 46-117 (318)
283 COG3118 Thioredoxin domain-con 41.6 1.2E+02 0.0026 36.8 9.1 92 1261-1357 168-261 (304)
284 TIGR01987 HI0074 nucleotidyltr 41.5 2.1E+02 0.0045 30.6 9.9 86 1029-1115 2-108 (123)
285 KOG2034 Vacuolar sorting prote 41.5 2.8E+02 0.006 38.1 13.0 52 1086-1156 364-415 (911)
286 COG0790 FOG: TPR repeat, SEL1 41.0 4.7E+02 0.01 30.1 13.6 124 1012-1151 74-212 (292)
287 smart00777 Mad3_BUB1_I Mad3/BU 40.9 1.7E+02 0.0036 31.4 9.1 72 1066-1153 42-122 (125)
288 COG2976 Uncharacterized protei 40.1 1.1E+02 0.0024 35.4 8.1 75 1263-1343 128-202 (207)
289 PF01535 PPR: PPR repeat; Int 39.5 32 0.00069 26.1 2.8 27 1132-1158 2-28 (31)
290 smart00101 14_3_3 14-3-3 homol 39.4 4.8E+02 0.01 30.9 13.4 49 1131-1192 2-50 (244)
291 PF04190 DUF410: Protein of un 38.7 4E+02 0.0087 31.3 12.7 160 1103-1290 5-170 (260)
292 COG2912 Uncharacterized conser 38.3 47 0.001 39.5 5.2 56 1030-1085 195-250 (269)
293 KOG4340 Uncharacterized conser 37.6 9E+02 0.02 30.1 15.4 110 1028-1158 156-269 (459)
294 PF12862 Apc5: Anaphase-promot 37.5 42 0.00091 33.1 4.0 57 1029-1085 11-76 (94)
295 COG5159 RPN6 26S proteasome re 37.4 9E+02 0.019 30.0 16.2 130 1014-1157 6-152 (421)
296 PF09797 NatB_MDM20: N-acetylt 37.4 3.4E+02 0.0074 33.0 12.3 91 1024-1115 191-286 (365)
297 PF14561 TPR_20: Tetratricopep 37.0 1.1E+02 0.0023 30.7 6.7 59 1002-1065 13-73 (90)
298 KOG4234 TPR repeat-containing 36.2 70 0.0015 37.2 5.9 61 1027-1087 145-205 (271)
299 TIGR00756 PPR pentatricopeptid 35.9 55 0.0012 25.0 3.7 27 1132-1158 2-28 (35)
300 KOG1130 Predicted G-alpha GTPa 35.8 2.5E+02 0.0054 35.8 10.6 212 1049-1297 134-375 (639)
301 KOG0530 Protein farnesyltransf 35.8 2.5E+02 0.0054 34.1 10.3 82 1429-1526 210-291 (318)
302 PF04781 DUF627: Protein of un 35.6 93 0.002 32.9 6.2 64 1017-1085 2-79 (111)
303 KOG4147 Uncharacterized conser 35.4 26 0.00056 36.7 2.2 42 14-62 45-86 (127)
304 PF13374 TPR_10: Tetratricopep 35.0 48 0.001 26.6 3.3 27 1408-1436 6-32 (42)
305 KOG0985 Vesicle coat protein c 34.5 1.3E+03 0.028 33.1 17.1 225 1030-1286 1293-1587(1666)
306 PF13176 TPR_7: Tetratricopept 33.7 43 0.00094 27.5 2.9 25 1053-1077 2-26 (36)
307 PF13041 PPR_2: PPR repeat fam 33.4 1E+02 0.0022 26.7 5.3 34 1130-1166 3-36 (50)
308 COG3629 DnrI DNA-binding trans 33.2 1.2E+02 0.0026 36.5 7.4 52 1028-1079 165-216 (280)
309 KOG0890 Protein kinase of the 32.8 2.2E+03 0.048 33.3 27.0 82 1029-1121 1396-1481(2382)
310 COG4700 Uncharacterized protei 30.9 8.6E+02 0.019 28.7 13.0 131 1066-1213 72-212 (251)
311 PF00244 14-3-3: 14-3-3 protei 30.5 7.8E+02 0.017 28.7 13.2 177 1131-1361 2-198 (236)
312 KOG4279 Serine/threonine prote 30.2 1E+02 0.0022 41.3 6.5 81 1368-1467 258-345 (1226)
313 PF11817 Foie-gras_1: Foie gra 30.1 1.5E+02 0.0032 34.3 7.3 62 1085-1156 183-244 (247)
314 PF12862 Apc5: Anaphase-promot 29.1 3.4E+02 0.0075 26.8 8.8 82 1341-1453 7-88 (94)
315 PF02184 HAT: HAT (Half-A-TPR) 28.8 82 0.0018 26.9 3.6 27 1032-1059 3-29 (32)
316 KOG4642 Chaperone-dependent E3 28.8 68 0.0015 38.1 4.3 64 1312-1379 28-104 (284)
317 PF04053 Coatomer_WDAD: Coatom 28.3 2E+02 0.0044 36.5 8.6 111 1011-1152 307-424 (443)
318 PF10579 Rapsyn_N: Rapsyn N-te 28.3 1.3E+02 0.0029 30.3 5.6 58 1015-1077 10-67 (80)
319 cd02679 MIT_spastin MIT: domai 27.3 50 0.0011 32.8 2.6 18 454-471 26-43 (79)
320 KOG1941 Acetylcholine receptor 26.9 2.7E+02 0.0059 35.1 8.9 114 1030-1153 136-269 (518)
321 COG1747 Uncharacterized N-term 26.8 8.2E+02 0.018 32.3 13.1 126 1013-1158 101-233 (711)
322 KOG2471 TPR repeat-containing 26.8 6.8E+02 0.015 32.9 12.4 127 1027-1157 28-166 (696)
323 KOG0529 Protein geranylgeranyl 25.2 2.2E+02 0.0048 36.1 7.9 56 1032-1087 91-148 (421)
324 PF14853 Fis1_TPR_C: Fis1 C-te 25.2 95 0.0021 28.6 3.8 35 1051-1085 2-36 (53)
325 PF13374 TPR_10: Tetratricopep 25.1 98 0.0021 24.8 3.5 29 1051-1079 3-31 (42)
326 PF13812 PPR_3: Pentatricopept 24.3 1.1E+02 0.0023 23.8 3.5 28 1131-1158 2-29 (34)
327 KOG0545 Aryl-hydrocarbon recep 24.2 2.1E+02 0.0045 34.5 7.1 79 1003-1082 212-296 (329)
328 COG4976 Predicted methyltransf 23.8 90 0.002 37.0 4.1 58 1028-1085 7-64 (287)
329 COG5187 RPN7 26S proteasome re 23.7 1.5E+02 0.0033 36.1 6.0 79 1098-1186 92-171 (412)
330 PF10602 RPN7: 26S proteasome 23.6 6.1E+02 0.013 28.2 10.3 35 1051-1085 37-71 (177)
331 PF02184 HAT: HAT (Half-A-TPR) 23.6 1.2E+02 0.0027 25.8 3.8 29 1277-1306 3-31 (32)
332 smart00299 CLH Clathrin heavy 23.4 3.2E+02 0.007 28.1 7.8 111 1061-1192 18-133 (140)
333 COG3898 Uncharacterized membra 23.1 1.7E+03 0.037 28.8 15.5 193 1229-1451 82-305 (531)
334 KOG0276 Vesicle coat complex C 22.3 3.9E+02 0.0085 35.6 9.4 93 1028-1151 649-742 (794)
335 KOG2066 Vacuolar assembly/sort 22.2 2.3E+03 0.049 29.8 17.7 47 1331-1377 618-668 (846)
336 COG4455 ImpE Protein of avirul 22.0 1.2E+02 0.0026 35.8 4.7 44 1103-1154 16-59 (273)
337 PF04184 ST7: ST7 protein; In 20.7 2E+02 0.0043 37.3 6.5 84 1276-1360 183-287 (539)
338 COG4455 ImpE Protein of avirul 20.7 8.7E+02 0.019 29.2 11.0 182 1030-1235 15-210 (273)
339 PRK13184 pknD serine/threonine 20.5 6.4E+02 0.014 35.3 11.5 249 1302-1629 484-760 (932)
340 smart00356 ZnF_C3H1 zinc finge 20.5 60 0.0013 24.7 1.4 22 856-877 4-26 (27)
No 1
>KOG4839 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.7e-71 Score=642.58 Aligned_cols=708 Identities=15% Similarity=0.078 Sum_probs=564.2
Q ss_pred CCCCCCCCCceEEEecCCCCCCcc-ccccccccccccCCceeecCCCCCCCchhHhhhhh-HHHhhhhcccccccCCCCc
Q 000322 44 WFPSSGKNDNLVISFSDDDSGSDT-EDYRHKTAFENKSNTTRVDGSGRPPTSSAVKVKNL-QQTARNVSKAIPKKLSPSR 121 (1670)
Q Consensus 44 ~~~~~g~~~nlvi~fsdd~sgs~~-e~~~~~~~~~~~~~~~~v~~n~r~~~~~~~k~~~~-~~~~r~~~~~~pkk~~~~~ 121 (1670)
.|+++|.|.++||+|||+|+|+|| ++.|.+++ . -|-.++-|.+++.++.... |...| .|.++..+..
T Consensus 14 ~~~s~~~n~~~~~NfSd~~~g~es~d~~~~~qs-n------~I~P~~~p~tF~~t~~~~p~~~d~~----~it~~~ls~~ 82 (753)
T KOG4839|consen 14 PYHSPLLNFKSYRNFSDYYRGKESLDLSSVSQS-N------MIEPDQCPCTFDLTGTCNPDDCDWQ----HITDYTLSRK 82 (753)
T ss_pred cCCCccccchhcccCCccccccccCCCcccccc-c------cCCCccCCcccccccCCCCcccccc----cccccccChh
Confidence 388999999999999999999999 55555554 2 2344888989999999999 88888 7888876666
Q ss_pred ceeeeccCCCCCCCcCCCCCCccccccccccccccccccc---------cccccccCchhhHHHHHHHHhhhhhhhhhHh
Q 000322 122 TLTTTRNHGGANSWVSRPPSVDQRSRVRNFSIKTKLGSLE---------CGDQVGLRNSKLQDLRQQIALRESELKLKAA 192 (1670)
Q Consensus 122 ~f~~tk~~~~a~s~~~~~~~~~q~s~~~~~~~~~~l~~~e---------~~~~~~~n~~k~qdlr~qialre~elklkaa 192 (1670)
+|.. .+.+. +.-.+.++.+......||.| ..+.+.+|.+|+||+. |++|+++ |++++
T Consensus 83 ~F~~-----~~~~~------~sl~~~a~t~~~~~~taSSektvsK~~~~~e~~~~~n~nk~~~~s--~~~~ss~-~~~~~ 148 (753)
T KOG4839|consen 83 LFQD-----ILSYN------LSLIGCAETSTNEEITASSEKTVSKLFGVNEDRMSMNQNKVLLVS--NINESSG-HTPPF 148 (753)
T ss_pred hhhh-----hhhcC------hhhhcCcccCCccccccchhhhHHhhhCCchhhhccchHHHHHHH--hhhhccc-CCCCc
Confidence 8873 22222 23344444445555667776 3455588999999999 9999999 99999
Q ss_pred hccccccc--------ccccccccCCCCCCCCCcccceeccccccccccCCCcccccccccCCCCCCCCCCCCccCCCcc
Q 000322 193 QQNKDLVI--------DSCENYHLGRLDQKEPDKKRLKVSGSYSHRLTTDGRQDIPATKSTVPVKEPTPERSSLQDGNKV 264 (1670)
Q Consensus 193 ~q~k~~~~--------vs~~~~~~~~l~~kepd~krlkv~~sy~~~~~~d~~q~~~~~k~~~~~k~~~~~~~~~~~r~~~ 264 (1670)
|..||.+. ++..+.|.+.+||.||.+||+++++- +.. +||....+-..+-+++|
T Consensus 149 q~~Kd~r~~K~t~~rrp~~~ssdT~~~e~se~pkk~~~~s~~-------~~~--~p~~D~~vt~~~~~~~n--------- 210 (753)
T KOG4839|consen 149 QTYKDKRKWKPTFWRRPISDSSDTSDEEQSEGPKKYAFQSEN-------QIN--VPALDTVVTPDDVRYTN--------- 210 (753)
T ss_pred cchhhhccCCCcccccccccccccchhcccccchhhhccCcc-------ccc--Cccccceeccccccccc---------
Confidence 99999987 67788899999999999999999998 333 36666666665656555
Q ss_pred cCCCCCCCccccccceeeecccCCccccCCCcccccccccCCCCCCCCcccccccccccccccccccccccccCcchhhh
Q 000322 265 DRSQKDIPRSRIESEIVKWDKQNGKQVHVPPENVLSVVKDVANPNASCNQSDRDSRRVNTGPVLHNTSQLANMTSSNFLK 344 (1670)
Q Consensus 265 ~~~~k~~p~~r~~s~~vk~~~q~~~~~~~s~~~~~~~~~~~~n~n~~~~q~d~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 344 (1670)
|..|++ .+..||+.|.+|.|....+ |.| +++ | .+|+. |++.++
T Consensus 211 ------------e~d~~~------------------~le~gV~~N~s~~~l~~ks--~v~-~l~-~--~eG~~-SsS~~s 253 (753)
T KOG4839|consen 211 ------------ETDDIA------------------NLEAGVLENPSHVQLWLKS--AVK-YLN-Q--NEGEC-SSSLDS 253 (753)
T ss_pred ------------chhHHH------------------hhccccccChHHHhhccch--hhh-hhh-h--hcCcc-chhhhc
Confidence 333443 5678999999999999988 555 344 3 78998 557778
Q ss_pred hcccccccCCcCccCCCCCCCccccccccccccccccccccccCCC--CCCCCCCc---cccccccccccCCCCccccCC
Q 000322 345 NAQERIESDPASTAAGCHPSSFLSNATREQNVMENSEYTKAISGDK--IDGPSFNN---VHQVNTASLGNFSGNGNVSGN 419 (1670)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~~--~~~~~~~~---~~~~~~a~l~n~~g~~nv~~h 419 (1670)
..+++++++ .|++..+.|. .+ .++. ...||++.+|+| +..++|++ +++.++-.+.|++|.+.++
T Consensus 254 qgsl~ln~~-----kaaR~le~~K-iD--~~~s-~~h~L~~~nGt~~v~~e~~n~~~~~lp~~~~~~~~~~p~st~~p-- 322 (753)
T KOG4839|consen 254 QGSLALNVL-----KAARALENNK-ID--NPES-WCHYLRLFNGTKDVVQEMCNTAVEYLPDYQSFWTFLHPESTFEP-- 322 (753)
T ss_pred cccceeehh-----hhhhHHhhcc-CC--Cccc-hhheeeccCCChhHHHHhhhhhhhcccccccchhccCCCCcCCc--
Confidence 888888888 5888888887 33 2455 788999999999 88888887 8888999999999999999
Q ss_pred CcchhhhHHhhHHHhhHHHHHHHHhhhcchhhhhHHHHHHHHHHHHHHHHhhhhHHHhHhhhhhcccccceeecCCcccc
Q 000322 420 SNVDIQSLLDMEELLDKELEEAQEHRRICEIEERKALKAYRKAQRALIEANASCTKLYRQRELCSARFRSFVMDDSNLLW 499 (1670)
Q Consensus 420 ~n~d~~sl~~mee~~dkeleeaqe~r~~ceieer~alkayrkaqraliean~rc~~ly~kre~~sa~~~s~i~~~s~l~~ 499 (1670)
.+++|.++++.|+-.||+++++|+..|..|+++|||++.|+++||+++|||+||+++|.+||+. ..+||++|+.|.|
T Consensus 323 ~~~v~e~~~~~~~g~dk~~~~~~~s~~llE~~~~n~~~~~~~~~rs~~lA~lrnae~~~~r~~~---~~~Li~rd~~l~w 399 (753)
T KOG4839|consen 323 KDYVCERMLEFLMGADKQETSNILSFQLLEALLFNVQLHIFTGRRSSALAILRNAEKSANRGIV---AEYLITRDRCLAW 399 (753)
T ss_pred chhhHhhhhhhhhccchhhhHHHHHHHHhhhchhhhhhhhhhhhhhHHHHHHHhhHHHhhhchh---hhhheehhhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999954 8999999999999
Q ss_pred ccccccccccccccCCCCCCccccc-cC---CCCcccCCCcCCCCCCCCCCCcccCCCCCCCCcccccCCCCCCCCCCCC
Q 000322 500 SSGQHETLGNEFDLSKHVSGNMHLA-PT---STHQMQSGYVGYNQGGYDSSMQCINGDLQNFSHEHENGQNLGSEPCSEQ 575 (1670)
Q Consensus 500 ~~~~~~~~~~g~~~~~~~~~~~~~~-p~---~~~~~~~~~~~~n~~~~~s~~~~~~~~~~~~~~~h~~g~nlg~~~~~~~ 575 (1670)
|-+.| --+|++-++- ++++ |+ ++|..+.+|++. .++.+..-|+|+|. |..
T Consensus 400 p~~~p--ts~~~~~Lps----v~~a~~sn~~~sh~~n~E~vv~-----------------~~~~~~~v~~np~~---s~~ 453 (753)
T KOG4839|consen 400 PAYIP--TSIEFNILPS----VKFADPSNDNPSHIVNTESVVM-----------------PWQAVQDVKTNPDL---SAV 453 (753)
T ss_pred cccCC--cchhhcccCC----CcccccccCCcccccccceecc-----------------CCchhhhhccCCch---hhc
Confidence 95532 2566655544 2233 44 899999999976 55556668999996 889
Q ss_pred CCCccCcCccCccccccCCCCCCcccCCCcchhhhhccCcccccccchhhhhhhHhhhhccccccccccccccccCCCch
Q 000322 576 DASTSELLPRKSKNALNGISPQSNELMVSADEEEEACQLDLESVQPNFEYQQKDQIAEGRQISTDYRHNNKLSAVSSQDP 655 (1670)
Q Consensus 576 ~astse~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~he~~~~~~~~~~~~~~~~~r~~~~~~~~n~~~s~~~~qd~ 655 (1670)
+||||..+|+.++.++.+++.| +..+ .|.++++||+++
T Consensus 454 gas~s~a~t~~s~~te~rLeap-----~l~~--te~iav~heEHp----------------------------------- 491 (753)
T KOG4839|consen 454 GASASKACTDESLATEERLEAP-----LLLY--TEMIAVHHEEHP----------------------------------- 491 (753)
T ss_pred cccccccCCCcchhHHHHHhcc-----ccCc--cccccchhhhhh-----------------------------------
Confidence 9999999999999999999999 4444 788999998522
Q ss_pred HHHHHhhhHHHHHHhccccccCCCCCCCCcCCccccccccccccccccccCCCcCCCccccccccCCCCCCccccccCCc
Q 000322 656 LLLEATLRSELFARLGMRTFSKDSGSCFNVEPSVEQRADNDIGSDKMQMSNGSVPSSGEQSQQHDIGGTDKPERRIQEAP 735 (1670)
Q Consensus 656 lllea~lrs~lf~r~g~r~~~~~~~~~~~~e~~~~~~~e~~~g~~~~q~~~~~~~~~~~~~~~~dl~~n~~~e~~~~~~~ 735 (1670)
|.+|+.+|+|||++..+..+ .|++.|+.+.+++| .|.+.+|+.- |=|-+ ++ |...++..+.+++
T Consensus 492 ----a~~~~~~~d~l~~l~Es~~g-~c~~~etlV~~~~e--~~~~~~~R~k--v~L~~-----~e--Gk~n~q~~p~e~~ 555 (753)
T KOG4839|consen 492 ----AERYEAAMDLLKSLLESCPG-NCQLLETLVALYLE--TNQHDKARAK--VWLTA-----FE--GKKNPQNAPVEYH 555 (753)
T ss_pred ----HHHHHHHHHHHHHHHhcCCc-cchhHHHHHHHHhh--hcchhhhhhH--HHHHh-----hh--ccCCccCCcccch
Confidence 89999999999999999988 99999999999998 8888888772 11222 23 5557777777877
Q ss_pred cccccchhhccCccccccccCCCCCCCCcccccccccccchhhhhhhhhhhhhhhhhhcccccCCcccCCCccccchhhh
Q 000322 736 FQIQDKCLVEKGLLEFHSTYHSKGNKFPTTMNHSTSVLLSPPILRGAFGHLKSELCIALSNQSGNQHNHGRNFEIEEVAC 815 (1670)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~h~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1670)
+.. ..|++|.. +.++|+.- .+.+++++.|.||++..|.|+ | +|++.+| +.++-++. |
T Consensus 556 ~~~---~sI~ens~---------~~d~~s~r-ilss~s~~~Pgf~~t~~~dkv--p-~l~~~~g------P~yi~~~~-~ 612 (753)
T KOG4839|consen 556 MCK---FSILENSG---------DNDLPSLR-ILSSASFFKPGFEKTNNLDKV--P-YLLNIPG------PIYIPSRL-C 612 (753)
T ss_pred hHH---HHHHhccc---------cccchhhh-hhhhhhhcCCcccccchhhhc--c-hhhcCCC------chhhhhhh-c
Confidence 766 66777765 55666543 578899999999999999999 6 7889977 44444322 2
Q ss_pred hccccccccceeccCCCCccccccCcccccccccCCCCCCCccceecccc-cccCCCCchhhhhcccccc--cccccCCC
Q 000322 816 VNSDKTQACYLIANSKPDIVKGYVGKEMGSYTCNLAIDPLWPLCMYELRG-KCNNDECPWQHVKYFADRN--KNLHDDSD 892 (1670)
Q Consensus 816 ~~sd~~~~~~~~~~~~~~~~~~~~~~~~~S~t~s~~idp~~~lC~fel~G-~CNd~~C~wQH~~d~~~~~--~~~~d~s~ 892 (1670)
-. +..+.+++. +|.+ ..++.-+|+..+|||+|+||+||++| .||+|+|.|||++|+.+++ +-.+|.
T Consensus 613 y~--~r~~~~f~e------~Vpy-~~~i~~y~~~lk~~p~~~~c~YE~~ggrCn~d~c~w~hf~df~~~g~~~~~~~~-- 681 (753)
T KOG4839|consen 613 YG--NRDDDMFNE------QVPY-LWLIYCYCHPLKSSPKETVCAYEAAGGRCNIDQCIWMHFLDFANNGRAAGSRNK-- 681 (753)
T ss_pred cc--chhhHHHhh------hhhh-HhhhheecccccCCcchhHHHHHhccCccCchhhhHHHHHHhhcccchhhhcCc--
Confidence 21 566777755 5555 23444444445999999999999997 9999999999999999997 444442
Q ss_pred CCCCCCCCCcccccccccccccccccccCCCccccccccccchhhhhhhhhhhccCccccccccccccccccCC
Q 000322 893 SAGCQIGSTIPQEHCNVGTKLSKGHDILTPPTYIVGLDILKADSYQYQSVIARRHGLCWQKCLSVSLAISSIYP 966 (1670)
Q Consensus 893 l~~~~~~s~~~e~~~~~~~k~~k~~~~l~~pty~v~~d~m~~D~~~~k~~r~~r~~~~wqK~~s~s~a~s~~~q 966 (1670)
.-.-+..-++++++.. |.+...++++.|||.+..|.|++|.+.|.+|.+-++++-|.|+++.+.|.+.+..
T Consensus 682 --~~r~~~~td~v~~~s~-k~~~~ldivfs~td~~s~~~~~vdf~~~~~v~~~~H~~~w~~~~s~~pa~s~s~~ 752 (753)
T KOG4839|consen 682 --VQRFKFFTDLVNRCSV-KVPARLDIVFSSTDYWSYEFHRVDFFYLSCVPKTQHSKTWERFCSVMPANSGSAL 752 (753)
T ss_pred --hhhhcccchhhhhccc-ccccccccccccccccccccceeeEEEEeeeeHHHHhHHHHHHHhhccccccccc
Confidence 1222233345544443 6888999999999999999999999999999999999999999999999887653
No 2
>KOG4839 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.2e-41 Score=394.31 Aligned_cols=567 Identities=19% Similarity=0.242 Sum_probs=441.8
Q ss_pred cccccccccCCCCCCCccceecccccccCCCCchhhhhcccccccccccC-C---CCCCCCCCCCccccccccccccccc
Q 000322 841 KEMGSYTCNLAIDPLWPLCMYELRGKCNNDECPWQHVKYFADRNKNLHDD-S---DSAGCQIGSTIPQEHCNVGTKLSKG 916 (1670)
Q Consensus 841 ~~~~S~t~s~~idp~~~lC~fel~G~CNd~~C~wQH~~d~~~~~~~~~d~-s---~l~~~~~~s~~~e~~~~~~~k~~k~ 916 (1670)
+...++++||+|.|.+++|.|+++|+||+++|.|||..|++++..+|+|+ + +|++|.++++-+++.+++ +|+
T Consensus 38 ~d~~~~~qsn~I~P~~~p~tF~~t~~~~p~~~d~~~it~~~ls~~~F~~~~~~~~sl~~~a~t~~~~~~taSS----ekt 113 (753)
T KOG4839|consen 38 LDLSSVSQSNMIEPDQCPCTFDLTGTCNPDDCDWQHITDYTLSRKLFQDILSYNLSLIGCAETSTNEEITASS----EKT 113 (753)
T ss_pred CCCccccccccCCCccCCcccccccCCCCcccccccccccccChhhhhhhhhcChhhhcCcccCCccccccch----hhh
Confidence 57889999999999999999999999999999999999999999999999 4 889999999999998777 899
Q ss_pred ccccCCCccccccccccchhhh-------------------hhhhhhhccCccccccccccccccccCCCCCCcccccCC
Q 000322 917 HDILTPPTYIVGLDILKADSYQ-------------------YQSVIARRHGLCWQKCLSVSLAISSIYPKDLPADLSLIG 977 (1670)
Q Consensus 917 ~~~l~~pty~v~~d~m~~D~~~-------------------~k~~r~~r~~~~wqK~~s~s~a~s~~~q~~~p~~~~~~~ 977 (1670)
+.|+ |+++.|+|.|||+. ||+.|+|+| ++|+|+.++++-+++.+|+.+|.+++.-+
T Consensus 114 vsK~----~~~~e~~~~~n~nk~~~~s~~~~ss~~~~~~q~~Kd~r~~K~-t~~rrp~~~ssdT~~~e~se~pkk~~~~s 188 (753)
T KOG4839|consen 114 VSKL----FGVNEDRMSMNQNKVLLVSNINESSGHTPPFQTYKDKRKWKP-TFWRRPISDSSDTSDEEQSEGPKKYAFQS 188 (753)
T ss_pred HHhh----hCCchhhhccchHHHHHHHhhhhcccCCCCccchhhhccCCC-cccccccccccccchhcccccchhhhccC
Confidence 9999 99999999999998 999999999 79999999999999999999999997777
Q ss_pred CCcceec--CCc--cccccccccchhhhhhhhhccccH----HHHHHHHHHHhcccc-cchhhHHH----HHHHH--HHH
Q 000322 978 DGRIECI--GSW--NRQSSFFRSRNGVLNKLKQVELSN----EQCVEMALLILNQDA-NKLEGMKK----ALSLL--SRA 1042 (1670)
Q Consensus 978 d~ri~~~--~~~--~~~~rYF~~~~d~i~~le~~~~d~----qlWLelAl~~Lnq~~-n~~g~ydA----ALdLL--srA 1042 (1670)
+..|.++ |++ +++++| .+++|++.+||++|..+ |+|++.|.++|++.+ +.+...++ |+++| .|+
T Consensus 189 ~~~~~~p~~D~~vt~~~~~~-~ne~d~~~~le~gV~~N~s~~~l~~ks~v~~l~~~eG~~SsS~~sqgsl~ln~~kaaR~ 267 (753)
T KOG4839|consen 189 ENQINVPALDTVVTPDDVRY-TNETDDIANLEAGVLENPSHVQLWLKSAVKYLNQNEGECSSSLDSQGSLALNVLKAARA 267 (753)
T ss_pred cccccCccccceeccccccc-ccchhHHHhhccccccChHHHhhccchhhhhhhhhcCccchhhhccccceeehhhhhhH
Confidence 7766666 665 999999 89999999999999887 999999999999977 66777777 99999 999
Q ss_pred HHhCC-CCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCC
Q 000322 1043 LEADP-TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD 1121 (1670)
Q Consensus 1043 LEINP-tSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~D 1121 (1670)
||.+. ++++.|++|+.++. |+.....+|+..|+++-| .|.=||.|..-+.++..+.++++...++++.+.+.. .
T Consensus 268 le~~KiD~~~s~~h~L~~~n--Gt~~v~~e~~n~~~~~lp-~~~~~~~~~~p~st~~p~~~v~e~~~~~~~g~dk~~--~ 342 (753)
T KOG4839|consen 268 LENNKIDNPESWCHYLRLFN--GTKDVVQEMCNTAVEYLP-DYQSFWTFLHPESTFEPKDYVCERMLEFLMGADKQE--T 342 (753)
T ss_pred HhhccCCCccchhheeeccC--CChhHHHHhhhhhhhccc-ccccchhccCCCCcCCcchhhHhhhhhhhhccchhh--h
Confidence 99999 99999999999975 777789999999999997 677788999999999998889999999998877776 3
Q ss_pred cchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHH-HHHhhccc
Q 000322 1122 EMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY-LVIYRKLP 1200 (1670)
Q Consensus 1122 r~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iY-llrYrvLP 1200 (1670)
...+|++++|+++.-+++-..+|+-..+++ |+++|.+..+. .|+ ..||...|+|.+|..+++ .+.+-.||
T Consensus 343 ~~~~s~~llE~~~~n~~~~~~~~~rs~~lA----~lrnae~~~~r-~~~----~~~Li~rd~~l~wp~~~pts~~~~~Lp 413 (753)
T KOG4839|consen 343 SNILSFQLLEALLFNVQLHIFTGRRSSALA----ILRNAEKSANR-GIV----AEYLITRDRCLAWPAYIPTSIEFNILP 413 (753)
T ss_pred HHHHHHHHhhhchhhhhhhhhhhhhhHHHH----HHHhhHHHhhh-chh----hhhheehhhhhcccccCCcchhhcccC
Confidence 467899999999999999999999888888 66666555443 333 789999999999999999 89999999
Q ss_pred h-HHHhhhh------hhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHH--HHHHHH
Q 000322 1201 D-AVLQLLE------CEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAV--NHIWCM 1271 (1670)
Q Consensus 1201 G-n~y~q~e------~~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKL--N~IR~l 1271 (1670)
. .+++..+ ..-|-+-.+|+.++.++.+|+ ..++...|.+.+ -+++++-+ .++..+..+ ++|...
T Consensus 414 sv~~a~~sn~~~sh~~n~E~vv~~~~~~~~v~~np~-~s~~gas~s~a~----t~~s~~te--~rLeap~l~~te~iav~ 486 (753)
T KOG4839|consen 414 SVKFADPSNDNPSHIVNTESVVMPWQAVQDVKTNPD-LSAVGASASKAC----TDESLATE--ERLEAPLLLYTEMIAVH 486 (753)
T ss_pred CCcccccccCCcccccccceeccCCchhhhhccCCc-hhhccccccccC----CCcchhHH--HHHhccccCccccccch
Confidence 8 8888777 356778899999999999999 555544333333 23444433 232222222 332222
Q ss_pred HH---hcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHH-HHHHHHH--hCCCCCc--hHHHHHHHHHHH
Q 000322 1272 AV---LNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSV-GFEEALI--KWPKGVP--GIQCIWNQYVEY 1341 (1670)
Q Consensus 1272 I~---LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~s-vle~AL~--~~PkNa~--g~~caW~QLIq~ 1341 (1670)
.. .+.-+++++++..+++.||-.|.+ .|++.|++... -..+|. +|.++++ .+|.+.+ +++|.+--+=.-
T Consensus 487 heEHpa~~~~~~~d~l~~l~Es~~g~c~~~etlV~~~~e~~~-~~~~R~kv~L~~~eGk~n~q~~p~e~~~~~~sI~ens 565 (753)
T KOG4839|consen 487 HEEHPAERYEAAMDLLKSLLESCPGNCQLLETLVALYLETNQ-HDKARAKVWLTAFEGKKNPQNAPVEYHMCKFSILENS 565 (753)
T ss_pred hhhhhHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHhhhcc-hhhhhhHHHHHhhhccCCccCCcccchhHHHHHHhcc
Confidence 11 346788999999999999999999 99999988654 566774 9999999 8898888 888887322111
Q ss_pred HHHcCChHHHHHHHHHHHHhhhhcccccccchhhhccc-CCCCCCC-----CCCCCCcccccccccchhhHHHHHHH--H
Q 000322 1342 ALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVAD-MSHSSPE-----STSTSDPEFSVSNRNQMDVMFGYLNL--S 1413 (1670)
Q Consensus 1342 al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkg-ns~i~~e-----s~s~~vSDfy~~~~~q~d~~fa~LGD--~ 1413 (1670)
+ +.++..-. |. +-.++..-..+....+|-+... +.+++.. .-++..-|.+ ..|+ .|++. |
T Consensus 566 ~--~~d~~s~r-il--ss~s~~~Pgf~~t~~~dkvp~l~~~~gP~yi~~~~~y~~r~~~~f---~e~V----py~~~i~~ 633 (753)
T KOG4839|consen 566 G--DNDLPSLR-IL--SSASFFKPGFEKTNNLDKVPYLLNIPGPIYIPSRLCYGNRDDDMF---NEQV----PYLWLIYC 633 (753)
T ss_pred c--cccchhhh-hh--hhhhhcCCcccccchhhhcchhhcCCCchhhhhhhcccchhhHHH---hhhh----hhHhhhhe
Confidence 1 11222211 11 1112222233444455544422 2222111 0112233333 3444 67777 5
Q ss_pred HHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHh
Q 000322 1414 LHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLL 1453 (1670)
Q Consensus 1414 L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS 1453 (1670)
|..-|+-...+.+-+||.+.+-= ++ ..-.|..|..|-.
T Consensus 634 y~~~lk~~p~~~~c~YE~~ggrC-n~-d~c~w~hf~df~~ 671 (753)
T KOG4839|consen 634 YCHPLKSSPKETVCAYEAAGGRC-NI-DQCIWMHFLDFAN 671 (753)
T ss_pred ecccccCCcchhHHHHHhccCcc-Cc-hhhhHHHHHHhhc
Confidence 66667899999999999999622 22 2345777777754
No 3
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.93 E-value=4.2e-24 Score=253.87 Aligned_cols=321 Identities=18% Similarity=0.208 Sum_probs=273.2
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHH
Q 000322 1029 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAAL 1108 (1670)
Q Consensus 1029 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI 1108 (1670)
.+.++-|..+|+|+|.++|..-.+|...+.+...+++.++....|++||+++|....||+||.+.+|.- +++ ..|+
T Consensus 529 ~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~a-gdv---~~ar 604 (913)
T KOG0495|consen 529 RPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKA-GDV---PAAR 604 (913)
T ss_pred cchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhc-CCc---HHHH
Confidence 345689999999999999999999999999999999999999999999999999999999999999987 445 8999
Q ss_pred HHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhH
Q 000322 1109 SVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWV 1188 (1670)
Q Consensus 1109 ~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL 1188 (1670)
.+|.+++..+ |.. +||||+.++|+..+..++.|.. |++.|.. .++ ..| .|+
T Consensus 605 ~il~~af~~~-pns-------eeiwlaavKle~en~e~eraR~----llakar~-~sg--------------TeR--v~m 655 (913)
T KOG0495|consen 605 VILDQAFEAN-PNS-------EEIWLAAVKLEFENDELERARD----LLAKARS-ISG--------------TER--VWM 655 (913)
T ss_pred HHHHHHHHhC-CCc-------HHHHHHHHHHhhccccHHHHHH----HHHHHhc-cCC--------------cch--hhH
Confidence 9999999999 455 9999999999999999999988 6654333 222 445 899
Q ss_pred HHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHH
Q 000322 1189 CCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHI 1268 (1670)
Q Consensus 1189 ~~iYllrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~I 1268 (1670)
+++++.+|.-.- +.+..|.+-|+..|- .+.|+=+|
T Consensus 656 Ks~~~er~ld~~----------------------------eeA~rllEe~lk~fp-----------------~f~Kl~lm 690 (913)
T KOG0495|consen 656 KSANLERYLDNV----------------------------EEALRLLEEALKSFP-----------------DFHKLWLM 690 (913)
T ss_pred HHhHHHHHhhhH----------------------------HHHHHHHHHHHHhCC-----------------chHHHHHH
Confidence 999998887652 566666676544443 56676443
Q ss_pred --HHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhccc-CCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHc
Q 000322 1269 --WCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDF-GDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQN 1345 (1670)
Q Consensus 1269 --R~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m-~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~ 1345 (1670)
+++...++.+.|+..|...++.||.|+.|||..+.|+++.+ +..|+.+|+++...+|+|+. .|...|+++++.
T Consensus 691 lGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~----lwle~Ir~ElR~ 766 (913)
T KOG0495|consen 691 LGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNAL----LWLESIRMELRA 766 (913)
T ss_pred HhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcch----hHHHHHHHHHHc
Confidence 33334779999999999999999999999999999999885 88999999999999999999 888889999999
Q ss_pred CChHHHHHHHHHHHHhhhhccc-------------ccccchhhhccc-CCCCCCCCCCCCCcccccccccchhhHHHHHH
Q 000322 1346 GRHDFAAELMDRWFHSVWKVQY-------------SQVEISDPLVAD-MSHSSPESTSTSDPEFSVSNRNQMDVMFGYLN 1411 (1670)
Q Consensus 1346 en~d~Ai~Lc~~ff~gia~~Q~-------------~~deALDaLrkg-ns~i~~es~s~~vSDfy~~~~~q~d~~fa~LG 1411 (1670)
|+.+.|..++.+.++.++.++. ++..++|+|++. +.|- .+|.
T Consensus 767 gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dph------------------------Vlla 822 (913)
T KOG0495|consen 767 GNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPH------------------------VLLA 822 (913)
T ss_pred CCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCch------------------------hHHH
Confidence 9999999999998888877775 888999999987 4442 5778
Q ss_pred HHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCC
Q 000322 1412 LSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINES 1457 (1670)
Q Consensus 1412 D~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~ 1457 (1670)
.+..+|.+.++++|.+||++|++.+|++ =.+|-.+--|-...|+
T Consensus 823 ia~lfw~e~k~~kar~Wf~Ravk~d~d~--GD~wa~fykfel~hG~ 866 (913)
T KOG0495|consen 823 IAKLFWSEKKIEKAREWFERAVKKDPDN--GDAWAWFYKFELRHGT 866 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCcc--chHHHHHHHHHHHhCC
Confidence 8888888999999999999999999998 6777666666556553
No 4
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.87 E-value=7e-19 Score=211.86 Aligned_cols=379 Identities=15% Similarity=0.030 Sum_probs=275.5
Q ss_pred cHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----
Q 000322 1010 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---- 1085 (1670)
Q Consensus 1010 d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~---- 1085 (1670)
+.+.++..|..+++++ +++.|+..|+++++++|.++++|+.++.+|...++-+++..+|++|++..|++..
T Consensus 21 ~~~~~~~~a~~~~~~~-----~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 95 (899)
T TIGR02917 21 SPESLIEAAKSYLQKN-----KYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPL 95 (899)
T ss_pred CHHHHHHHHHHHHHcC-----ChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHH
Confidence 5567888899888874 5799999999999999999999999999999999999999999999999998765
Q ss_pred HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCC
Q 000322 1086 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND 1165 (1670)
Q Consensus 1086 LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~s 1165 (1670)
++..|...+ .|++|+..+.+.....++.. .+++..+...|...|++++|+..+.++.. .....
T Consensus 96 ~a~~~~~~g--------~~~~a~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~ 158 (899)
T TIGR02917 96 LARAYLLQG--------KFQQVLDELPGKTLLDDEGA-------AELLALRGLAYLGLGQLELAQKSYEQALA--IDPRS 158 (899)
T ss_pred HHHHHHHCC--------CHHHHHHhhcccccCCchhh-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC
Confidence 677788888 88999999976653332333 67888999999999999999998888775 22223
Q ss_pred cccchHHHHHHhhccCCcchh--hHHHH---H--HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHH
Q 000322 1166 RHSLFLSDILTCLTISDKLIF--WVCCV---Y--LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMA 1238 (1670)
Q Consensus 1166 E~~lSLsKi~~YLt~sDR~~A--WL~~i---Y--llrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~smA 1238 (1670)
. ...+.....|+..++-..| ++... . ......+.|.++...|...+|... +.++++.+|++...++.+|
T Consensus 159 ~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~---~~~a~~~~p~~~~~~~~~~ 234 (899)
T TIGR02917 159 L-YAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAA---YRKAIALRPNNPAVLLALA 234 (899)
T ss_pred h-hhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHH---HHHHHhhCCCCHHHHHHHH
Confidence 3 4455556666666665444 22222 1 233455678889999999999998 8899999999988888876
Q ss_pred HHHHhhhcCCcchhhhhhhchhhHhH----HHHHHHH--HHhcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhhcccCC
Q 000322 1239 VNSVELYSNGESLEKETNLRSAHCFA----VNHIWCM--AVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGD 1311 (1670)
Q Consensus 1239 ~dYY~~~~ndesla~~~~~kt~~~fK----LN~IR~l--I~LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~K~m~~ 1311 (1670)
.-++. .|+-+.+...-.++....| ..+++.+ ...++.+.|+.+|.++++..|..... .+.+..+...+..+
T Consensus 235 ~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~ 312 (899)
T TIGR02917 235 TILIE--AGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLE 312 (899)
T ss_pred HHHHH--cCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHH
Confidence 44544 4444444332111111111 1112222 23679999999999999999998776 33333223333377
Q ss_pred ccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHH------------Hhhhhccc-ccccchhhhcc
Q 000322 1312 LSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWF------------HSVWKVQY-SQVEISDPLVA 1378 (1670)
Q Consensus 1312 ~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff------------~gia~~Q~-~~deALDaLrk 1378 (1670)
+|+..|++++...|++.. ++..++......|++++|+.++.+.. .+..+... +.++|++.+++
T Consensus 313 ~A~~~~~~~~~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 388 (899)
T TIGR02917 313 QAYQYLNQILKYAPNSHQ----ARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAK 388 (899)
T ss_pred HHHHHHHHHHHhCCCChH----HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 899999999999999988 78888899999999999999988732 23333333 77888888876
Q ss_pred cCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCC
Q 000322 1379 DMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1439 (1670)
Q Consensus 1379 gns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N 1439 (1670)
.....+ . ..+++ ..++.++.. .|++++|...|+++++..|..
T Consensus 389 ~~~~~~-----~-~~~~~-----------~~l~~~~~~--~~~~~~A~~~~~~a~~~~~~~ 430 (899)
T TIGR02917 389 ATELDP-----E-NAAAR-----------TQLGISKLS--QGDPSEAIADLETAAQLDPEL 430 (899)
T ss_pred HHhcCC-----C-CHHHH-----------HHHHHHHHh--CCChHHHHHHHHHHHhhCCcc
Confidence 532211 0 12222 556677777 899999999999999888876
No 5
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.86 E-value=1.3e-17 Score=201.08 Aligned_cols=412 Identities=13% Similarity=0.021 Sum_probs=277.8
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHH
Q 000322 1030 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1105 (1670)
Q Consensus 1030 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~Yd 1105 (1670)
|+++.|+..|..+++.+|+...+++.++.+|...+.-.++..+|+++++..|.+.. ++.+|+..+ .++
T Consensus 275 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g--------~~~ 346 (899)
T TIGR02917 275 KNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLG--------RVD 346 (899)
T ss_pred cCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCC--------CHH
Confidence 56788888888888888888888888888888888888888888888888887765 556677777 778
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcch
Q 000322 1106 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLI 1185 (1670)
Q Consensus 1106 kAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~ 1185 (1670)
+|+..|.++.... +.. .+++..+..+|...|++++|+..+.+... ..-.+. .........|+..++...
T Consensus 347 ~A~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~~~~l~~~~~~~~~~~~ 415 (899)
T TIGR02917 347 EAIATLSPALGLD-PDD-------PAALSLLGEAYLALGDFEKAAEYLAKATE--LDPENA-AARTQLGISKLSQGDPSE 415 (899)
T ss_pred HHHHHHHHHHhcC-CCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCH-HHHHHHHHHHHhCCChHH
Confidence 8888888887776 343 67788888889999999999987777664 221122 223333445555555543
Q ss_pred h--hHHHHH-----HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhc
Q 000322 1186 F--WVCCVY-----LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLR 1258 (1670)
Q Consensus 1186 A--WL~~iY-----llrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ndesla~~~~~k 1258 (1670)
| .+.... ........+..|...|..+++..+ +....+..|+++.....+|.-|.. .|+-..+...-.+
T Consensus 416 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~---~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~ 490 (899)
T TIGR02917 416 AIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAA---AKKLEKKQPDNASLHNLLGAIYLG--KGDLAKAREAFEK 490 (899)
T ss_pred HHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHH---HHHHHHhCCCCcHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 3 111111 111223345667778888888887 777777788877777777533443 4444433333222
Q ss_pred hhhHh------HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHH-hhcccCCccHHHHHHHHHhCCCCCchH
Q 000322 1259 SAHCF------AVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARL-QKHDFGDLSSVGFEEALIKWPKGVPGI 1331 (1670)
Q Consensus 1259 t~~~f------KLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL-~~K~m~~~A~svle~AL~~~PkNa~g~ 1331 (1670)
+.... -.++.+.+...++.+.|+.+|+++++.+|.++..+...+.+ ...+..++|+..|++++...|++..
T Consensus 491 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-- 568 (899)
T TIGR02917 491 ALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIE-- 568 (899)
T ss_pred HHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchh--
Confidence 11111 11334444457789999999999999999998883333332 2333478889999999999999888
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH------------hhhhccc-ccccchhhhcccCCCCCCCCCCCCCcccccc
Q 000322 1332 QCIWNQYVEYALQNGRHDFAAELMDRWFH------------SVWKVQY-SQVEISDPLVADMSHSSPESTSTSDPEFSVS 1398 (1670)
Q Consensus 1332 ~caW~QLIq~al~~en~d~Ai~Lc~~ff~------------gia~~Q~-~~deALDaLrkgns~i~~es~s~~vSDfy~~ 1398 (1670)
.|..++......|++++|+.++++... +..+... +.++|++.+++.....+. ....
T Consensus 569 --~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~--- 637 (899)
T TIGR02917 569 --PALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD------SALA--- 637 (899)
T ss_pred --HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChHH---
Confidence 888889999999999999999887332 2222222 777888888765322110 0122
Q ss_pred cccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHH------
Q 000322 1399 NRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLL------ 1472 (1670)
Q Consensus 1399 ~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~~~KtV------ 1472 (1670)
+..++.++.+ .|++++|...|+++++.+|++ ..++...+..+...+ +.++|..+-. ++.
T Consensus 638 --------~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~-~~~~A~~~~~--~~~~~~~~~ 702 (899)
T TIGR02917 638 --------LLLLADAYAV--MKNYAKAITSLKRALELKPDN--TEAQIGLAQLLLAAK-RTESAKKIAK--SLQKQHPKA 702 (899)
T ss_pred --------HHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcC-CHHHHHHHHH--HHHhhCcCC
Confidence 2678888888 999999999999999999998 778888887776544 4666655333 222
Q ss_pred -HHHHhhhcccccccc--cchhhh
Q 000322 1473 -NSYLDRARSLPYLKL--LPRQFI 1493 (1670)
Q Consensus 1473 -sTYLDTAWILf~~~~--lARiYI 1493 (1670)
..|..-+++++..+. +|..+.
T Consensus 703 ~~~~~~~~~~~~~~g~~~~A~~~~ 726 (899)
T TIGR02917 703 ALGFELEGDLYLRQKDYPAAIQAY 726 (899)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHH
Confidence 122222677777777 565555
No 6
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.77 E-value=5e-15 Score=193.49 Aligned_cols=589 Identities=10% Similarity=0.005 Sum_probs=364.7
Q ss_pred cccccccccchh--hhh----hh-hhccccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHH-------
Q 000322 988 NRQSSFFRSRNG--VLN----KL-KQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILW------- 1053 (1670)
Q Consensus 988 ~~~~rYF~~~~d--~i~----~l-e~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaW------- 1053 (1670)
-+|+||...... ... ++ .-.|.+.+.+..++...+.++ +++.|...|.++++++|+++.++
T Consensus 32 l~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g-----~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~ 106 (1157)
T PRK11447 32 LEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQG-----DSDGAQKLLDRLSQLAPDSNAYRSSRTTML 106 (1157)
T ss_pred HHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 366777663332 222 22 233667788888888887664 56999999999999999999986
Q ss_pred ---------HHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcch
Q 000322 1054 ---------ITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMH 1124 (1670)
Q Consensus 1054 ---------y~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~ 1124 (1670)
..++.++...+..+++...|+++++.+|++..+...|...-....+ .+++|+..|+++.+.+ |+.
T Consensus 107 ~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g---~~~~A~~~L~~ll~~~-P~~-- 180 (1157)
T PRK11447 107 LSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPA---QRPEAINQLQRLNADY-PGN-- 180 (1157)
T ss_pred hcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCc---cHHHHHHHHHHHHHhC-CCC--
Confidence 4556678888999999999999999999998866655543211222 5699999999999998 565
Q ss_pred hhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCC-c------------ccchHHHHHHhhccCCcch-hhHHH
Q 000322 1125 ASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND-R------------HSLFLSDILTCLTISDKLI-FWVCC 1190 (1670)
Q Consensus 1125 ~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~s-E------------~~lSLsKi~~YLt~sDR~~-AWL~~ 1190 (1670)
.++.+.+..++...|+++.|+..+.++......... . ..-.+..+..|+..-.... +--+.
T Consensus 181 -----~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~ 255 (1157)
T PRK11447 181 -----TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAAR 255 (1157)
T ss_pred -----HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHH
Confidence 789999999999999999999999887641100000 0 0001111222222111100 00000
Q ss_pred HHH---------HHh-hccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchh
Q 000322 1191 VYL---------VIY-RKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSA 1260 (1670)
Q Consensus 1191 iYl---------lrY-rvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ndesla~~~~~kt~ 1260 (1670)
..+ ..| ..+.|..+...|...+|... +.++++.+|+++.++..+|.-|+. .++-..+...-.++.
T Consensus 256 ~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~---l~~aL~~~P~~~~a~~~Lg~~~~~--~g~~~eA~~~l~~Al 330 (1157)
T PRK11447 256 SQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPE---LQQAVRANPKDSEALGALGQAYSQ--QGDRARAVAQFEKAL 330 (1157)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHH---HHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHH
Confidence 000 001 12347788888999999999 999999999999999999755555 455544444422222
Q ss_pred hHhHH--------------------HHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHH
Q 000322 1261 HCFAV--------------------NHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFE 1318 (1670)
Q Consensus 1261 ~~fKL--------------------N~IR~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle 1318 (1670)
...|- .....+...++.++|+.+|.++++..|.+... .|...|+..+ ..++|+..|+
T Consensus 331 ~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g-~~~eA~~~y~ 409 (1157)
T PRK11447 331 ALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARK-DYAAAERYYQ 409 (1157)
T ss_pred HhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHH
Confidence 22211 11112233669999999999999999999988 3444444444 4889999999
Q ss_pred HHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHH---------------------Hhhhh-cccccccchhhh
Q 000322 1319 EALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWF---------------------HSVWK-VQYSQVEISDPL 1376 (1670)
Q Consensus 1319 ~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff---------------------~gia~-~Q~~~deALDaL 1376 (1670)
+|+.++|++.. +|..+..... .++.++|+..+..+- ++-.+ .+.+.++|+..+
T Consensus 410 ~aL~~~p~~~~----a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~ 484 (1157)
T PRK11447 410 QALRMDPGNTN----AVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQ 484 (1157)
T ss_pred HHHHhCCCCHH----HHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999998 7777776654 568898887765421 11111 123778888888
Q ss_pred cccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCC
Q 000322 1377 VADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINE 1456 (1670)
Q Consensus 1377 rkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~ 1456 (1670)
++....-+. ...++ -.++.+|++ .|++++|...|+++++..|.+ ...+..++.|+...+
T Consensus 485 ~~Al~~~P~------~~~~~-----------~~LA~~~~~--~G~~~~A~~~l~~al~~~P~~--~~~~~a~al~l~~~~ 543 (1157)
T PRK11447 485 RQRLALDPG------SVWLT-----------YRLAQDLRQ--AGQRSQADALMRRLAQQKPND--PEQVYAYGLYLSGSD 543 (1157)
T ss_pred HHHHHhCCC------CHHHH-----------HHHHHHHHH--cCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHhCC
Confidence 876332110 01222 567778888 999999999999999999988 677777787765433
Q ss_pred CCCCcccc-------------hhhhHHHH--HHHHhhhcccccccc--cchhhhccccchhhHHHHhhhcCCCCCChhhH
Q 000322 1457 SEPKEGAP-------------ISWQLKLL--NSYLDRARSLPYLKL--LPRQFINNIERPRLQQLIDNLLSPVSSDFSLV 1519 (1670)
Q Consensus 1457 ~dL~KAeq-------------MS~~~KtV--sTYLDTAWILf~~~~--lARiYI~~i~k~rv~~liDqaL~~~S~dss~~ 1519 (1670)
. .++|.. |......+ ..+|..|.++...++ +|..++ + ..|.+ ...
T Consensus 544 ~-~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l------------~--~~p~~---~~~ 605 (1157)
T PRK11447 544 R-DRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL------------R--QQPPS---TRI 605 (1157)
T ss_pred C-HHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH------------H--hCCCC---chH
Confidence 2 222211 11000000 123333444555554 444444 1 11211 111
Q ss_pred HHHHhhccCCCCcccccccccchhHHHHHHHhhcCcchhhHHHHHHHhhccCCCCCCCCCchhHHHHHhhhhhhhhhccC
Q 000322 1520 NLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNKDHNPNITDAVPESVLFWASSSLVSAIFHAV 1599 (1670)
Q Consensus 1520 nkALE~W~g~slLpqKI~~kKyi~dfVE~ime~~P~Ny~Lal~v~kll~k~~~~~~~d~~s~~~~fwA~s~l~~ai~~a~ 1599 (1670)
...|-.|+ + +.++...=..+.+.+++.-|.|...-+..+.++....+ ...+..... .+...-
T Consensus 606 ~~~La~~~----~--~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~------~~eA~~~l~------~ll~~~ 667 (1157)
T PRK11447 606 DLTLADWA----Q--QRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGD------LAAARAQLA------KLPATA 667 (1157)
T ss_pred HHHHHHHH----H--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC------HHHHHHHHH------HHhccC
Confidence 12222232 1 11123334567888889999998888888887765444 111221111 111111
Q ss_pred CCCchHHHHHHHHHhhhchhHHHHHHHHHHhhhccccc------hHHHHHHHHhhhcccCChHHHHHHH
Q 000322 1600 PVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPF------SIKLWKCYYDLSKTKGDLNTIVKAA 1662 (1670)
Q Consensus 1600 pvape~vWveaa~~l~~l~~~~~i~~rfy~~AlsvyPf------S~~LW~~y~~~~~~~g~~~~ive~a 1662 (1670)
|- ...+|...|.++..+ |.-+-+..+|++|+...|= .+.+++..-.+....|..+..++.-
T Consensus 668 p~-~~~~~~~la~~~~~~-g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y 734 (1157)
T PRK11447 668 ND-SLNTQRRVALAWAAL-GDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETY 734 (1157)
T ss_pred CC-ChHHHHHHHHHHHhC-CCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 22 224566666666554 4444458899999987652 3457776677778888886555553
No 7
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.73 E-value=1.3e-14 Score=186.71 Aligned_cols=293 Identities=10% Similarity=-0.037 Sum_probs=215.5
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHHH
Q 000322 1030 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALS 1109 (1670)
Q Consensus 1030 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~ 1109 (1670)
|+++.|+..|.+||+++|+++++++.++.+|+..++..++..++++||+++|.|.++.++....+ .|++|+.
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i~--------~~~kA~~ 129 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAIP--------VEVKSVT 129 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHhc--------cChhHHH
Confidence 67899999999999999999999999999999999999999999999999999999877765544 8899999
Q ss_pred HHHHhhhcCCCCcchhhhhhHHHHHHHHHH--------HHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccC
Q 000322 1110 VLCRCASASDGDEMHASACILDLFLQMLQC--------FCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTIS 1181 (1670)
Q Consensus 1110 aLe~las~~~~Dr~~~Sa~iLDILL~LvqL--------Y~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~s 1181 (1670)
+|+++++.+ |++ .|+++.++.+ |.+.+...+||. .+++. .++... -+.|.+.++|+.++
T Consensus 130 ~ye~l~~~~-P~n-------~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~--~~~~~~-vL~L~~~rlY~~l~ 196 (987)
T PRK09782 130 TVEELLAQQ-KAC-------DAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFA--ASPEGK-TLRTDLLQRAIYLK 196 (987)
T ss_pred HHHHHHHhC-CCC-------hhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhC--CCCCcH-HHHHHHHHHHHHHh
Confidence 999999999 787 9999999998 999988888887 55554 443333 48999999999999
Q ss_pred Ccc-hh----hHHHHH--HHHhhccchHHHhhh-hhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhh
Q 000322 1182 DKL-IF----WVCCVY--LVIYRKLPDAVLQLL-ECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEK 1253 (1670)
Q Consensus 1182 DR~-~A----WL~~iY--llrYrvLPGn~y~q~-e~~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ndesla~ 1253 (1670)
|-. .. .|+..+ ...|...++++|+++ +. +++..+ +...++.+|.-..++ +++|.. .|+.+.+.
T Consensus 197 dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al---~~~~lk~d~~l~~al----a~~yi~-~G~~~~A~ 267 (987)
T PRK09782 197 QWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLAL---QSQGIFTDPQSRITY----ATALAY-RGEKARLQ 267 (987)
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHH---hchhcccCHHHHHHH----HHHHHH-CCCHHHHH
Confidence 943 33 566655 777888899999995 66 888888 666666555555544 356665 77777766
Q ss_pred hhhhchhhHhHH-------------------------------HHHH-HH------HHhcCHHHHHHHHHHHHHhCCCch
Q 000322 1254 ETNLRSAHCFAV-------------------------------NHIW-CM------AVLNGLECSMNLLEKYIKLYPSCL 1295 (1670)
Q Consensus 1254 ~~~~kt~~~fKL-------------------------------N~IR-~l------I~LEDse~A~~LfdklLk~~P~d~ 1295 (1670)
..=.+...+++. ++.+ ++ +..+++..+. +++...|.+.
T Consensus 268 ~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 343 (987)
T PRK09782 268 HYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQ----KLLATLPANE 343 (987)
T ss_pred HHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHH----HHhcCCCcch
Confidence 551122222211 1000 00 0011333222 3455556665
Q ss_pred hHHHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000322 1296 ELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFH 1360 (1670)
Q Consensus 1296 eL~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~ 1360 (1670)
-+.+-.+++...+.--++...|.......|.+.. .=.|+.=.++++|+.++|.++.+..|.
T Consensus 344 ~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~----~l~q~~~~~~~~~~~~~a~~~~~~~~~ 404 (987)
T PRK09782 344 MLEERYAVSVATRNKAEALRLARLLYQQEPANLT----RLDQLTWQLMQNGQSREAADLLLQRYP 404 (987)
T ss_pred HHHHHHhhccccCchhHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcccHHHHHHHHHHhcC
Confidence 4455555543323355777888888888898888 666667789999999999999999665
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.68 E-value=7.5e-15 Score=191.85 Aligned_cols=359 Identities=8% Similarity=-0.033 Sum_probs=241.7
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH------------------HHHHH
Q 000322 1029 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA------------------LWLMY 1090 (1670)
Q Consensus 1029 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~------------------LwlmY 1090 (1670)
.|+++.|...|.++|+++|+++++|+.++.+|.+.+..+++.++|++|++.+|++.. ++..+
T Consensus 282 ~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 367899999999999999999999999999999999999999999999999998642 12345
Q ss_pred HhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccch
Q 000322 1091 INSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLF 1170 (1670)
Q Consensus 1091 Insr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lS 1170 (1670)
+..+ .|++|+..|.++.+.. |+. .+.++.|..+|...|++++|++.+.+... +...+. ...
T Consensus 362 ~~~g--------~~~eA~~~~~~Al~~~-P~~-------~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~--~~p~~~-~a~ 422 (1157)
T PRK11447 362 LKAN--------NLAQAERLYQQARQVD-NTD-------SYAVLGLGDVAMARKDYAAAERYYQQALR--MDPGNT-NAV 422 (1157)
T ss_pred HHCC--------CHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCH-HHH
Confidence 5555 7899999999999888 454 67888999999999999999998888775 332222 222
Q ss_pred HHHHHHhhccCCcchh--hHHHH--------------H-HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHH
Q 000322 1171 LSDILTCLTISDKLIF--WVCCV--------------Y-LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIK 1233 (1670)
Q Consensus 1171 LsKi~~YLt~sDR~~A--WL~~i--------------Y-llrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalA 1233 (1670)
.....+|... +...| ++... . .-.| ...+.++...+...+|... +.+.++.+|+++.+
T Consensus 423 ~~L~~l~~~~-~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~-~~~a~~~~~~g~~~eA~~~---~~~Al~~~P~~~~~ 497 (1157)
T PRK11447 423 RGLANLYRQQ-SPEKALAFIASLSASQRRSIDDIERSLQNDRL-AQQAEALENQGKWAQAAEL---QRQRLALDPGSVWL 497 (1157)
T ss_pred HHHHHHHHhc-CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHH-HHHHHHHHHCCCHHHHHHH---HHHHHHhCCCCHHH
Confidence 2222333322 22222 22100 0 0011 1245666677777777777 77777777777777
Q ss_pred HHHHHHHHHhhhcCCcchhhhhhhchhhHhH-------------------------------------------------
Q 000322 1234 LIEMAVNSVELYSNGESLEKETNLRSAHCFA------------------------------------------------- 1264 (1670)
Q Consensus 1234 L~smA~dYY~~~~ndesla~~~~~kt~~~fK------------------------------------------------- 1264 (1670)
++.+|.-|+. .|+...+...-.++....|
T Consensus 498 ~~~LA~~~~~--~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~ 575 (1157)
T PRK11447 498 TYRLAQDLRQ--AGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQ 575 (1157)
T ss_pred HHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhH
Confidence 7777544443 3444333332111111101
Q ss_pred -HHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Q 000322 1265 -VNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYA 1342 (1670)
Q Consensus 1265 -LN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~a 1342 (1670)
+.....+...++.++|+.++. .+|.+..+ ..++..+...+..++|+..|++++..+|+|+. +|+.+++..
T Consensus 576 ~l~~a~~l~~~G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~----a~~~la~~~ 647 (1157)
T PRK11447 576 VLETANRLRDSGKEAEAEALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNAD----ARLGLIEVD 647 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHH
Confidence 111222233446666666554 68999988 44444445555599999999999999999999 999999999
Q ss_pred HHcCChHHHHHHHHH------------HHHhhhhccc-ccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHH
Q 000322 1343 LQNGRHDFAAELMDR------------WFHSVWKVQY-SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGY 1409 (1670)
Q Consensus 1343 l~~en~d~Ai~Lc~~------------ff~gia~~Q~-~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~ 1409 (1670)
...|++++|+..+++ +..+..+.+. +.++|+..+++.....+.......... ++..
T Consensus 648 ~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~-----------~~~~ 716 (1157)
T PRK11447 648 IAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESAL-----------VLRD 716 (1157)
T ss_pred HHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHH-----------HHHH
Confidence 999999999999987 2234434333 888899988876443211100000111 1244
Q ss_pred HHHHHHHhhhcCHHHHHHHHHHHHh
Q 000322 1410 LNLSLHRLLQNDWNEARLAIDAALK 1434 (1670)
Q Consensus 1410 LGD~L~q~Lqg~~~EAfaAYDKALk 1434 (1670)
++.++.. +|+.++|...|.+||.
T Consensus 717 ~a~~~~~--~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 717 AARFEAQ--TGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHH--cCCHHHHHHHHHHHHh
Confidence 5677777 9999999999999996
No 9
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.64 E-value=1.6e-13 Score=165.11 Aligned_cols=406 Identities=19% Similarity=0.176 Sum_probs=264.4
Q ss_pred CCCccccccccccchhhhhhhhhhhccCccccccccccccccccCCCCCCccc--ccCCCCcceec---CCccccccccc
Q 000322 921 TPPTYIVGLDILKADSYQYQSVIARRHGLCWQKCLSVSLAISSIYPKDLPADL--SLIGDGRIECI---GSWNRQSSFFR 995 (1670)
Q Consensus 921 ~~pty~v~~d~m~~D~~~~k~~r~~r~~~~wqK~~s~s~a~s~~~q~~~p~~~--~~~~d~ri~~~---~~~~~~~rYF~ 995 (1670)
..||++-....++--.+++||+|+--|. |...=.|+-..+-..+-... ..+-.|+=+++ |-|=+..|-+-
T Consensus 256 m~p~~~~dl~DikKaR~llKSvretnP~-----hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLhp 330 (913)
T KOG0495|consen 256 MIPTSGGDLEDIKKARLLLKSVRETNPK-----HPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLHP 330 (913)
T ss_pred cCCCccCcHHHHHHHHHHHHHHHhcCCC-----CCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcCC
Confidence 4688888888888777889999998774 44444444443322221111 11112222222 33433344433
Q ss_pred cchh--h-hhhhhhccccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHH
Q 000322 996 SRNG--V-LNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDM 1072 (1670)
Q Consensus 996 ~~~d--~-i~~le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~em 1072 (1670)
.+.. + .+-+.--|+++.+|++.|..- +. ...=.-+|.+|||..|++..+|-.-..+ ..++.+.-|
T Consensus 331 ~d~aK~vvA~Avr~~P~Sv~lW~kA~dLE--~~------~~~K~RVlRKALe~iP~sv~LWKaAVel----E~~~daril 398 (913)
T KOG0495|consen 331 PDVAKTVVANAVRFLPTSVRLWLKAADLE--SD------TKNKKRVLRKALEHIPRSVRLWKAAVEL----EEPEDARIL 398 (913)
T ss_pred hHHHHHHHHHHHHhCCCChhhhhhHHhhh--hH------HHHHHHHHHHHHHhCCchHHHHHHHHhc----cChHHHHHH
Confidence 2221 1 223444488888888877432 11 1334578999999999999999987666 556669999
Q ss_pred HHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHH
Q 000322 1073 FSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQR 1152 (1670)
Q Consensus 1073 lekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~t 1152 (1670)
+++||+.+|.+..||+-|.+.+ -|+.|..+|...-+.-|.+ -+||+.-..|.-.+|++++.-..
T Consensus 399 L~rAveccp~s~dLwlAlarLe--------tYenAkkvLNkaRe~iptd--------~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 399 LERAVECCPQSMDLWLALARLE--------TYENAKKVLNKAREIIPTD--------REIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred HHHHHHhccchHHHHHHHHHHH--------HHHHHHHHHHHHHhhCCCC--------hhHHHHHHHHHHhcCCHHHHHHH
Confidence 9999999999999999999999 9999999997777777667 49999999999999999988886
Q ss_pred HHhhcc-cccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHH
Q 000322 1153 ISRLLI-PATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRA 1231 (1670)
Q Consensus 1153 i~rLEq-~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdna 1231 (1670)
|+|=.. --.+|.. +. + -.||...-..+-- |+.--+-.| +
T Consensus 463 i~rgl~~L~~ngv~--------------i~-r-dqWl~eAe~~e~a----------gsv~TcQAI--------------i 502 (913)
T KOG0495|consen 463 IDRGLSELQANGVE--------------IN-R-DQWLKEAEACEDA----------GSVITCQAI--------------I 502 (913)
T ss_pred HHHHHHHHhhccee--------------ec-H-HHHHHHHHHHhhc----------CChhhHHHH--------------H
Confidence 655332 1122210 00 0 0255544321110 000000000 1
Q ss_pred HHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhcccCC
Q 000322 1232 IKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGD 1311 (1670)
Q Consensus 1232 lAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m~~ 1311 (1670)
.+.+..+ +-+++-...-......|-|.+ -+++++..|-.+|+.+|..-.|||.++++++.++..
T Consensus 503 ~avigig-------vEeed~~~tw~~da~~~~k~~---------~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~ 566 (913)
T KOG0495|consen 503 RAVIGIG-------VEEEDRKSTWLDDAQSCEKRP---------AIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTR 566 (913)
T ss_pred HHHHhhc-------cccchhHhHHhhhHHHHHhcc---------hHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcH
Confidence 1222211 111110000022222333333 677888899999999999999999999998888777
Q ss_pred ccH-HHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccc-------------ccccchhhhc
Q 000322 1312 LSS-VGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQY-------------SQVEISDPLV 1377 (1670)
Q Consensus 1312 ~A~-svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~-------------~~deALDaLr 1377 (1670)
++. +.|++|+...|+-.- .|++|+..-|..|+...|..|+...|...+.+-. ..++|-+.|.
T Consensus 567 Esl~Allqkav~~~pkae~----lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~lla 642 (913)
T KOG0495|consen 567 ESLEALLQKAVEQCPKAEI----LWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLA 642 (913)
T ss_pred HHHHHHHHHHHHhCCcchh----HHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHH
Confidence 777 889999999999888 9999999999999999999999887776665433 5566666666
Q ss_pred ccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCC
Q 000322 1378 ADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1439 (1670)
Q Consensus 1378 kgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N 1439 (1670)
++-+- ++..- .+|--+-+.|.+++.+||....|.||+.-|+=
T Consensus 643 kar~~---------------sgTeR-----v~mKs~~~er~ld~~eeA~rllEe~lk~fp~f 684 (913)
T KOG0495|consen 643 KARSI---------------SGTER-----VWMKSANLERYLDNVEEALRLLEEALKSFPDF 684 (913)
T ss_pred HHhcc---------------CCcch-----hhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch
Confidence 55221 11222 45666677778899999999999999888864
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.62 E-value=1.4e-13 Score=168.69 Aligned_cols=78 Identities=15% Similarity=0.108 Sum_probs=69.9
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhh
Q 000322 1028 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDA 1103 (1670)
Q Consensus 1028 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~ 1103 (1670)
..|+|+.|+..|.+||+++|+ +.+|+.++..|..++.-.++.+.|++|++++|++.. ++..|...+ .
T Consensus 139 ~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg--------~ 209 (615)
T TIGR00990 139 RNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLG--------K 209 (615)
T ss_pred HcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC--------C
Confidence 347789999999999999996 789999999999999999999999999999999876 677888888 8
Q ss_pred HHHHHHHHHHh
Q 000322 1104 YDAALSVLCRC 1114 (1670)
Q Consensus 1104 YdkAI~aLe~l 1114 (1670)
|++|+..|...
T Consensus 210 ~~eA~~~~~~~ 220 (615)
T TIGR00990 210 YADALLDLTAS 220 (615)
T ss_pred HHHHHHHHHHH
Confidence 99999888544
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.60 E-value=3.9e-13 Score=167.15 Aligned_cols=302 Identities=11% Similarity=0.017 Sum_probs=172.8
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHH
Q 000322 1030 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1105 (1670)
Q Consensus 1030 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~Yd 1105 (1670)
|+++.|+..|.++++++|+++.+|+.++.+|.+.+...++.+.|++|++++|++.. +...|...+ .++
T Consensus 90 g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g--------~~~ 161 (656)
T PRK15174 90 SQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMD--------KEL 161 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC--------ChH
Confidence 33455555555555555555555555555555555555555555555555555444 222333333 445
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcch
Q 000322 1106 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLI 1185 (1670)
Q Consensus 1106 kAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~ 1185 (1670)
+|+.+|..+.... |+. .+.+..++ .+...|++++|+..+.++.. . .+. .+.
T Consensus 162 eA~~~~~~~~~~~-P~~-------~~a~~~~~-~l~~~g~~~eA~~~~~~~l~--~---~~~-------------~~~-- 212 (656)
T PRK15174 162 QAISLARTQAQEV-PPR-------GDMIATCL-SFLNKSRLPEDHDLARALLP--F---FAL-------------ERQ-- 212 (656)
T ss_pred HHHHHHHHHHHhC-CCC-------HHHHHHHH-HHHHcCCHHHHHHHHHHHHh--c---CCC-------------cch--
Confidence 5555554444444 222 22222222 23444555555554444332 0 000 000
Q ss_pred hhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHH
Q 000322 1186 FWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAV 1265 (1670)
Q Consensus 1186 AWL~~iYllrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKL 1265 (1670)
....+.+..+...|...+|... +.+.+..+|+.+.++..+|.-|+.
T Consensus 213 ---------~~~~~l~~~l~~~g~~~eA~~~---~~~al~~~p~~~~~~~~Lg~~l~~---------------------- 258 (656)
T PRK15174 213 ---------ESAGLAVDTLCAVGKYQEAIQT---GESALARGLDGAALRRSLGLAYYQ---------------------- 258 (656)
T ss_pred ---------hHHHHHHHHHHHCCCHHHHHHH---HHHHHhcCCCCHHHHHHHHHHHHH----------------------
Confidence 0001224445556666666666 566666666666555555422332
Q ss_pred HHHHHHHHhcCH----HHHHHHHHHHHHhCCCchhH-HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 000322 1266 NHIWCMAVLNGL----ECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVE 1340 (1670)
Q Consensus 1266 N~IR~lI~LEDs----e~A~~LfdklLk~~P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq 1340 (1670)
.++. .+|+.+|+++++..|.++.+ ..++..+...+..++|+..|++++...|++.. +|..|..
T Consensus 259 --------~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~----a~~~La~ 326 (656)
T PRK15174 259 --------SGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPY----VRAMYAR 326 (656)
T ss_pred --------cCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHH
Confidence 2222 25788899999999998888 34444444444478888889999999999888 7888888
Q ss_pred HHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhc
Q 000322 1341 YALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQN 1420 (1670)
Q Consensus 1341 ~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg 1420 (1670)
...+.|++++|+..+++.... .|. ....+ ..++.+|.+ .|
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~-------------------~P~--------~~~~~-----------~~~a~al~~--~G 366 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLARE-------------------KGV--------TSKWN-----------RYAAAALLQ--AG 366 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHh-------------------Ccc--------chHHH-----------HHHHHHHHH--CC
Confidence 888888888888877542220 010 01112 456778888 99
Q ss_pred CHHHHHHHHHHHHhhccC---CcHHHHHHHHHHHHhc
Q 000322 1421 DWNEARLAIDAALKAAAS---EHFKHCVREHAMLLLI 1454 (1670)
Q Consensus 1421 ~~~EAfaAYDKALkanp~---N~~i~cLNNYAYFLS~ 1454 (1670)
+.++|..+|+++|...|+ ..|..+...|.-++..
T Consensus 367 ~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 367 KTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISA 403 (656)
T ss_pred CHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHh
Confidence 999999999999999885 4556666777766654
No 12
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.60 E-value=3.1e-13 Score=170.32 Aligned_cols=353 Identities=8% Similarity=-0.025 Sum_probs=206.1
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHH
Q 000322 1030 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1105 (1670)
Q Consensus 1030 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~Yd 1105 (1670)
|+.+.|+.++..|+.++|..+.+|..++.+|...+.-.++.+.|++|++++|++.. ++.+++..+ .++
T Consensus 29 g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g--------~~~ 100 (765)
T PRK10049 29 GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAG--------QYD 100 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--------CHH
Confidence 44566677777777777777777777777777777666677777777777776655 445555555 667
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcch
Q 000322 1106 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLI 1185 (1670)
Q Consensus 1106 kAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~ 1185 (1670)
+|+..|.++.+.. |+. .+ ++.+..+|...|++++|+..+.++.. ..-.++ ..-+..
T Consensus 101 eA~~~l~~~l~~~-P~~-------~~-~~~la~~l~~~g~~~~Al~~l~~al~--~~P~~~-~~~~~l------------ 156 (765)
T PRK10049 101 EALVKAKQLVSGA-PDK-------AN-LLALAYVYKRAGRHWDELRAMTQALP--RAPQTQ-QYPTEY------------ 156 (765)
T ss_pred HHHHHHHHHHHhC-CCC-------HH-HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCH-HHHHHH------------
Confidence 7777777766666 443 45 66667777777777777776666654 111111 111111
Q ss_pred hhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhH--------------------------------HHHHH
Q 000322 1186 FWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEK--------------------------------QRAIK 1233 (1670)
Q Consensus 1186 AWL~~iYllrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEP--------------------------------dnalA 1233 (1670)
+.++...+..++|+.. +..+.+ .| +.|++
T Consensus 157 ---------------a~~l~~~~~~e~Al~~---l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~ 217 (765)
T PRK10049 157 ---------------VQALRNNRLSAPALGA---IDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALA 217 (765)
T ss_pred ---------------HHHHHHCCChHHHHHH---HHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHH
Confidence 1111122222222221 111111 11 22222
Q ss_pred HHHHHHHHHhhhcCCcchhhhhhhchhhHhH---HHHHHHHHHhcCHHHHHHHHHHHHHhC---CCchhHHHHHHHHhhc
Q 000322 1234 LIEMAVNSVELYSNGESLEKETNLRSAHCFA---VNHIWCMAVLNGLECSMNLLEKYIKLY---PSCLELVLMKARLQKH 1307 (1670)
Q Consensus 1234 L~smA~dYY~~~~ndesla~~~~~kt~~~fK---LN~IR~lI~LEDse~A~~LfdklLk~~---P~d~eL~L~AAyL~~K 1307 (1670)
.++.+...+.. ++.....+. +..+..+...++.++|+..|+++++.. |..+.+++..+|+..+
T Consensus 218 ~~~~ll~~~~~-----------~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g 286 (765)
T PRK10049 218 QYDALEALWHD-----------NPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLH 286 (765)
T ss_pred HHHHHHhhccc-----------CCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcC
Confidence 22221111110 001101111 111222334568999999999999996 5555667877888877
Q ss_pred ccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhc----------------------
Q 000322 1308 DFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKV---------------------- 1365 (1670)
Q Consensus 1308 ~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~---------------------- 1365 (1670)
+ +++|+..|++++...|.+.......+.+|....++.+++++|+.++.+.....+..
T Consensus 287 ~-~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~ 365 (765)
T PRK10049 287 Q-PEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLL 365 (765)
T ss_pred C-cHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHH
Confidence 6 99999999999999998743223456666777789999999999988755443210
Q ss_pred ------ccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCC
Q 000322 1366 ------QYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1439 (1670)
Q Consensus 1366 ------Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N 1439 (1670)
+.+.++|++++++.....+. ..+.+ ..++.++.. .|+.++|...|++||..+|++
T Consensus 366 a~~l~~~g~~~eA~~~l~~al~~~P~------n~~l~-----------~~lA~l~~~--~g~~~~A~~~l~~al~l~Pd~ 426 (765)
T PRK10049 366 SQVAKYSNDLPQAEMRARELAYNAPG------NQGLR-----------IDYASVLQA--RGWPRAAENELKKAEVLEPRN 426 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHH-----------HHHHHHHHh--cCCHHHHHHHHHHHHhhCCCC
Confidence 11666777777765322111 01211 444555555 788888888888888888888
Q ss_pred cHHHHHHHHHHHHhcCCCCCCcccchhh
Q 000322 1440 HFKHCVREHAMLLLINESEPKEGAPISW 1467 (1670)
Q Consensus 1440 ~~i~cLNNYAYFLS~e~~dL~KAeqMS~ 1467 (1670)
...+-..|+ ..+...++++|+++=.
T Consensus 427 --~~l~~~~a~-~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 427 --INLEVEQAW-TALDLQEWRQMDVLTD 451 (765)
T ss_pred --hHHHHHHHH-HHHHhCCHHHHHHHHH
Confidence 666666666 3444445666666443
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.54 E-value=2.6e-12 Score=157.63 Aligned_cols=352 Identities=12% Similarity=-0.030 Sum_probs=200.5
Q ss_pred cHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----
Q 000322 1010 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---- 1085 (1670)
Q Consensus 1010 d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~---- 1085 (1670)
+...|+.+|.-++.. |+++.|+..+.++|+++|+.+.+|+.++..|...+.-+++...|..+..+.+.+..
T Consensus 159 ~~~~~~n~a~~~~~l-----~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~ 233 (615)
T TIGR00990 159 DPVYYSNRAACHNAL-----GDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQ 233 (615)
T ss_pred chHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHH
Confidence 356777777777665 56799999999999999999999999999999999988887777665544432211
Q ss_pred ------------------------------HHHHHHhcCC-----------C----cc-------------cchhhHHHH
Q 000322 1086 ------------------------------LWLMYINSRT-----------P----LN-------------HRLDAYDAA 1107 (1670)
Q Consensus 1086 ------------------------------LwlmYInsr~-----------s----ld-------------drl~~YdkA 1107 (1670)
++.++...+. . +. .....|++|
T Consensus 234 ~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A 313 (615)
T TIGR00990 234 AVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEA 313 (615)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHH
Confidence 1111100000 0 00 001257888
Q ss_pred HHHHHHhhhcC--CCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcch
Q 000322 1108 LSVLCRCASAS--DGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLI 1185 (1670)
Q Consensus 1108 I~aLe~las~~--~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~ 1185 (1670)
+.+|..+.... .+.. ...+..+..+|...|++++|+..+.+... ..|. .. .
T Consensus 314 ~~~~~~al~~~~~~~~~-------a~a~~~lg~~~~~~g~~~eA~~~~~kal~-----l~P~-~~--------------~ 366 (615)
T TIGR00990 314 ARAFEKALDLGKLGEKE-------AIALNLRGTFKCLKGKHLEALADLSKSIE-----LDPR-VT--------------Q 366 (615)
T ss_pred HHHHHHHHhcCCCChhh-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCC-cH--------------H
Confidence 88888877643 1232 56778888889999999999997776664 2331 00 0
Q ss_pred hhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHH
Q 000322 1186 FWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAV 1265 (1670)
Q Consensus 1186 AWL~~iYllrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKL 1265 (1670)
+| ...|.++...|...+|... +.++++.+|+++.+++.+|.-|+. .|+-+.+.....++....|-
T Consensus 367 ~~----------~~la~~~~~~g~~~eA~~~---~~~al~~~p~~~~~~~~lg~~~~~--~g~~~~A~~~~~kal~l~P~ 431 (615)
T TIGR00990 367 SY----------IKRASMNLELGDPDKAEED---FDKALKLNSEDPDIYYHRAQLHFI--KGEFAQAGKDYQKSIDLDPD 431 (615)
T ss_pred HH----------HHHHHHHHHCCCHHHHHHH---HHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCcc
Confidence 11 1234555666777777777 667777777777777666533332 33333333222222111111
Q ss_pred ------HHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHH-HhhcccCCccHHHHHHHHHhCCCCCchHH--HHHH
Q 000322 1266 ------NHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKAR-LQKHDFGDLSSVGFEEALIKWPKGVPGIQ--CIWN 1336 (1670)
Q Consensus 1266 ------N~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAy-L~~K~m~~~A~svle~AL~~~PkNa~g~~--caW~ 1336 (1670)
++...+..+++.+.|+.+|+++++..|.+.+++...+. +...+..++|+..|++|+.++|++.+.+. ..|.
T Consensus 432 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLI 511 (615)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHH
Confidence 11111222456666666666666666666666222222 22222255666666666666666544111 1111
Q ss_pred HHH-HHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHH
Q 000322 1337 QYV-EYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLH 1415 (1670)
Q Consensus 1337 QLI-q~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~ 1415 (1670)
..+ .+....+++++|+.++++.+. ..+ +. ...+..||.+++
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~-------------------l~p-----------~~--------~~a~~~la~~~~ 553 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALI-------------------IDP-----------EC--------DIAVATMAQLLL 553 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh-------------------cCC-----------Cc--------HHHHHHHHHHHH
Confidence 111 111123555555555544211 011 00 012256777888
Q ss_pred HhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHH
Q 000322 1416 RLLQNDWNEARLAIDAALKAAASEHFKHCVREHAM 1450 (1670)
Q Consensus 1416 q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAY 1450 (1670)
+ .|+++||..+|++|++..+.. ...++.+.|
T Consensus 554 ~--~g~~~eAi~~~e~A~~l~~~~--~e~~~a~~~ 584 (615)
T TIGR00990 554 Q--QGDVDEALKLFERAAELARTE--GELVQAISY 584 (615)
T ss_pred H--ccCHHHHHHHHHHHHHHhccH--HHHHHHHHH
Confidence 8 999999999999999988865 444444444
No 14
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.54 E-value=6.7e-12 Score=158.50 Aligned_cols=358 Identities=9% Similarity=0.016 Sum_probs=250.0
Q ss_pred ccccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-
Q 000322 1007 VELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA- 1085 (1670)
Q Consensus 1007 ~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~- 1085 (1670)
.+...+.|..+|..+.+.+. ++.|+.+|.++|+.+|.++.+|+.++.++...+...++.++++++++..|++..
T Consensus 45 ~~~~a~~~~~lA~~~~~~g~-----~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~~ 119 (765)
T PRK10049 45 MQLPARGYAAVAVAYRNLKQ-----WQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKANL 119 (765)
T ss_pred CCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 45666778888888877754 699999999999999999999999999999999999999999999999999976
Q ss_pred --HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCC
Q 000322 1086 --LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGS 1163 (1670)
Q Consensus 1086 --LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g 1163 (1670)
++.+|...+ .+++|+.+|+++.+.. |+. .++++.+..++...|..++|+..++++.. ...
T Consensus 120 ~~la~~l~~~g--------~~~~Al~~l~~al~~~-P~~-------~~~~~~la~~l~~~~~~e~Al~~l~~~~~--~p~ 181 (765)
T PRK10049 120 LALAYVYKRAG--------RHWDELRAMTQALPRA-PQT-------QQYPTEYVQALRNNRLSAPALGAIDDANL--TPA 181 (765)
T ss_pred HHHHHHHHHCC--------CHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHCCChHHHHHHHHhCCC--CHH
Confidence 566677777 8899999999999998 566 88989999999999999999998877664 100
Q ss_pred C---CcccchHHHHHHhhccCCcc--------hh-----hHHHH-------H--HHHhhcc-chHHHhhhhhhhhhhccC
Q 000322 1164 N---DRHSLFLSDILTCLTISDKL--------IF-----WVCCV-------Y--LVIYRKL-PDAVLQLLECEKELFAID 1217 (1670)
Q Consensus 1164 ~---sE~~lSLsKi~~YLt~sDR~--------~A-----WL~~i-------Y--llrYrvL-PGn~y~q~e~~KEAf~I~ 1217 (1670)
. .+.......++.++...... .| .+... + ....+.. .+.+ ...+..++|...
T Consensus 182 ~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L-l~~g~~~eA~~~- 259 (765)
T PRK10049 182 EKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL-LARDRYKDVISE- 259 (765)
T ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH-HHhhhHHHHHHH-
Confidence 0 00001223344444332210 01 11111 0 1111111 3334 455788889888
Q ss_pred CCCcccchhh---HHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhh----------HhHHHHHHHHHHhcCHHHHHHHH
Q 000322 1218 WPPVQLEDDE---KQRAIKLIEMAVNSVELYSNGESLEKETNLRSAH----------CFAVNHIWCMAVLNGLECSMNLL 1284 (1670)
Q Consensus 1218 W~y~~vlkdE---PdnalAL~smA~dYY~~~~ndesla~~~~~kt~~----------~fKLN~IR~lI~LEDse~A~~Lf 1284 (1670)
|..+++.. |+.+...+ | ++|-. .++.+.+...-.++.. .....+...+...++.++|+.++
T Consensus 260 --~~~ll~~~~~~P~~a~~~l--a-~~yl~-~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l 333 (765)
T PRK10049 260 --YQRLKAEGQIIPPWAQRWV--A-SAYLK-LHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVT 333 (765)
T ss_pred --HHHhhccCCCCCHHHHHHH--H-HHHHh-cCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 88888774 66655543 3 33333 5666655554222211 11112222333467999999999
Q ss_pred HHHHHhCCCch---------------hH-HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCCh
Q 000322 1285 EKYIKLYPSCL---------------EL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRH 1348 (1670)
Q Consensus 1285 dklLk~~P~d~---------------eL-~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~ 1348 (1670)
+++++..|... ++ .+.+..+...+..++|+..|++++...|+|.. +|+.++......|++
T Consensus 334 ~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~----l~~~lA~l~~~~g~~ 409 (765)
T PRK10049 334 AHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQG----LRIDYASVLQARGWP 409 (765)
T ss_pred HHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHhcCCH
Confidence 99999987432 23 44555555555689999999999999999988 999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHH
Q 000322 1349 DFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLA 1428 (1670)
Q Consensus 1349 d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaA 1428 (1670)
++|+.++++ ++.. .|- ..+++ -.++..+.. .|++++|...
T Consensus 410 ~~A~~~l~~--------------al~l-----~Pd--------~~~l~-----------~~~a~~al~--~~~~~~A~~~ 449 (765)
T PRK10049 410 RAAENELKK--------------AEVL-----EPR--------NINLE-----------VEQAWTALD--LQEWRQMDVL 449 (765)
T ss_pred HHHHHHHHH--------------HHhh-----CCC--------ChHHH-----------HHHHHHHHH--hCCHHHHHHH
Confidence 999998865 1111 010 11222 344445555 8999999999
Q ss_pred HHHHHhhccCC
Q 000322 1429 IDAALKAAASE 1439 (1670)
Q Consensus 1429 YDKALkanp~N 1439 (1670)
++++++..|++
T Consensus 450 ~~~ll~~~Pd~ 460 (765)
T PRK10049 450 TDDVVAREPQD 460 (765)
T ss_pred HHHHHHhCCCC
Confidence 99999999988
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.51 E-value=3.7e-12 Score=158.50 Aligned_cols=182 Identities=10% Similarity=-0.003 Sum_probs=139.0
Q ss_pred hhhccccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCC
Q 000322 1004 LKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1083 (1670)
Q Consensus 1004 le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~N 1083 (1670)
++..|.+.+.|+.+|..++.. |+++.|+..|.++++++|+++.+|..++.+|...+...++..+++++++..|++
T Consensus 103 l~~~P~~~~a~~~la~~l~~~-----g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~ 177 (656)
T PRK15174 103 LAVNVCQPEDVLLVASVLLKS-----KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR 177 (656)
T ss_pred HHhCCCChHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC
Confidence 344578888999998888776 456999999999999999999999999999999999999999999999999988
Q ss_pred HHHH---HHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccc
Q 000322 1084 YALW---LMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPA 1160 (1670)
Q Consensus 1084 Y~Lw---lmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~A 1160 (1670)
-..+ ..|+..+ .+++|+.+|.++....+.+. ......+..++...|+++.|+..+.+...
T Consensus 178 ~~a~~~~~~l~~~g--------~~~eA~~~~~~~l~~~~~~~-------~~~~~~l~~~l~~~g~~~eA~~~~~~al~-- 240 (656)
T PRK15174 178 GDMIATCLSFLNKS--------RLPEDHDLARALLPFFALER-------QESAGLAVDTLCAVGKYQEAIQTGESALA-- 240 (656)
T ss_pred HHHHHHHHHHHHcC--------CHHHHHHHHHHHHhcCCCcc-------hhHHHHHHHHHHHCCCHHHHHHHHHHHHh--
Confidence 7633 3456666 78999999988877663343 33445667888999999999998877774
Q ss_pred cCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhh----hhccCCCCcccchhhHHHHHHHHH
Q 000322 1161 TGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKE----LFAIDWPPVQLEDDEKQRAIKLIE 1236 (1670)
Q Consensus 1161 l~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGn~y~q~e~~KE----Af~I~W~y~~vlkdEPdnalAL~s 1236 (1670)
..| .+ ......+|..|...|...+ |... +.++++.+|+++.++..
T Consensus 241 ---~~p--------------~~-----------~~~~~~Lg~~l~~~G~~~eA~~~A~~~---~~~Al~l~P~~~~a~~~ 289 (656)
T PRK15174 241 ---RGL--------------DG-----------AALRRSLGLAYYQSGRSREAKLQAAEH---WRHALQFNSDNVRIVTL 289 (656)
T ss_pred ---cCC--------------CC-----------HHHHHHHHHHHHHcCCchhhHHHHHHH---HHHHHhhCCCCHHHHHH
Confidence 222 11 1122235677777776654 6667 77777778887777776
Q ss_pred HH
Q 000322 1237 MA 1238 (1670)
Q Consensus 1237 mA 1238 (1670)
+|
T Consensus 290 lg 291 (656)
T PRK15174 290 YA 291 (656)
T ss_pred HH
Confidence 64
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.46 E-value=1.9e-11 Score=139.16 Aligned_cols=296 Identities=15% Similarity=0.099 Sum_probs=207.5
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCC--------
Q 000322 1012 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS-------- 1083 (1670)
Q Consensus 1012 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~N-------- 1083 (1670)
..+.-.+..++.. |+++.|+.+|.++++.+|.++.+|+.++.+|...+...++..+++++++..+..
T Consensus 36 ~~~y~~g~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 110 (389)
T PRK11788 36 SRDYFKGLNFLLN-----EQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLAL 110 (389)
T ss_pred cHHHHHHHHHHhc-----CChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 3444445555444 456899999999999999999999999999999999999999999999864322
Q ss_pred HHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCC
Q 000322 1084 YALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGS 1163 (1670)
Q Consensus 1084 Y~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g 1163 (1670)
+.|+.+|...+ .|++|+.+|.++.... +.. .+.+..++.+|...|++++|+..+.++.. ...
T Consensus 111 ~~La~~~~~~g--------~~~~A~~~~~~~l~~~-~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~ 172 (389)
T PRK11788 111 QELGQDYLKAG--------LLDRAEELFLQLVDEG-DFA-------EGALQQLLEIYQQEKDWQKAIDVAERLEK--LGG 172 (389)
T ss_pred HHHHHHHHHCC--------CHHHHHHHHHHHHcCC-cch-------HHHHHHHHHHHHHhchHHHHHHHHHHHHH--hcC
Confidence 12788888888 8999999999988766 444 68899999999999999999998887764 111
Q ss_pred CCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHh
Q 000322 1164 NDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVE 1243 (1670)
Q Consensus 1164 ~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~ 1243 (1670)
... .. . ...|....+..+...+...+|... +.+.++.+|+...+.+.+| ..|.
T Consensus 173 ~~~---------------~~---~-----~~~~~~~la~~~~~~~~~~~A~~~---~~~al~~~p~~~~~~~~la-~~~~ 225 (389)
T PRK11788 173 DSL---------------RV---E-----IAHFYCELAQQALARGDLDAARAL---LKKALAADPQCVRASILLG-DLAL 225 (389)
T ss_pred Ccc---------------hH---H-----HHHHHHHHHHHHHhCCCHHHHHHH---HHHHHhHCcCCHHHHHHHH-HHHH
Confidence 110 00 0 111122356666777777788777 7777777777777776665 4443
Q ss_pred hhcCCcchhhhhhhchhhHhHH-------HHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhcccCCccHHH
Q 000322 1244 LYSNGESLEKETNLRSAHCFAV-------NHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVG 1316 (1670)
Q Consensus 1244 ~~~ndesla~~~~~kt~~~fKL-------N~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m~~~A~sv 1316 (1670)
. .|+...+...-.++...-|- .++..+...++.++|+.+|.++++..|....+...+..+...+..++|+..
T Consensus 226 ~-~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~ 304 (389)
T PRK11788 226 A-QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQAL 304 (389)
T ss_pred H-CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHH
Confidence 3 45544444432222221111 223444457799999999999999999875554444444444458899999
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHH---cCChHHHHHHHHHHHHhhh
Q 000322 1317 FEEALIKWPKGVPGIQCIWNQYVEYALQ---NGRHDFAAELMDRWFHSVW 1363 (1670)
Q Consensus 1317 le~AL~~~PkNa~g~~caW~QLIq~al~---~en~d~Ai~Lc~~ff~gia 1363 (1670)
|++++...|++.. +..++...+. .|+.++++.++++.+....
T Consensus 305 l~~~l~~~P~~~~-----~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 305 LREQLRRHPSLRG-----FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred HHHHHHhCcCHHH-----HHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence 9999999999876 3344444442 4588899999988765443
No 17
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.39 E-value=2e-10 Score=146.39 Aligned_cols=380 Identities=13% Similarity=0.016 Sum_probs=238.2
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH--H--HHHHHhcCCCcccchhhHH
Q 000322 1030 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--L--WLMYINSRTPLNHRLDAYD 1105 (1670)
Q Consensus 1030 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~--L--wlmYInsr~slddrl~~Yd 1105 (1670)
|+++.|++.|.+||+++|+++.+.+.++.++...++..++..+|++|+.-.|.++. + +..|.+.+ .|+
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~g--------dyd 119 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEK--------RWD 119 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC--------CHH
Confidence 77899999999999999999755449999999999999999999999955555565 4 56999999 999
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhc---cCC
Q 000322 1106 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLT---ISD 1182 (1670)
Q Consensus 1106 kAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt---~sD 1182 (1670)
+|+++|+++.+.. |+. .++++.++.+|...|++++|+..+.++++ ..+ ......++.|+. .+.
T Consensus 120 ~Aiely~kaL~~d-P~n-------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~--~dp----~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 120 QALALWQSSLKKD-PTN-------PDLISGMIMTQADAGRGGVVLKQATELAE--RDP----TVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HHHHHHHHHHhhC-CCC-------HHHHHHHHHHHhhcCCHHHHHHHHHHhcc--cCc----chHHHHHHHHHHHhcchH
Confidence 9999999999999 666 89999999999999999999999999997 333 233446667766 222
Q ss_pred cchh----hHHHHH--HHHhhccchHHHhhhhhhhhhhccCCCCcccc------hhhHHHHHHHHHHHHHHHhhhcCCc-
Q 000322 1183 KLIF----WVCCVY--LVIYRKLPDAVLQLLECEKELFAIDWPPVQLE------DDEKQRAIKLIEMAVNSVELYSNGE- 1249 (1670)
Q Consensus 1183 R~~A----WL~~iY--llrYrvLPGn~y~q~e~~KEAf~I~W~y~~vl------kdEPdnalAL~smA~dYY~~~~nde- 1249 (1670)
...+ .+...+ ...+-...-..+-.+|-..-|+.+-+.+.... -.+-+.+..++..|. .. +..+
T Consensus 186 ~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~-~~---~~~~~ 261 (822)
T PRK14574 186 YDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAV-LP---TRSET 261 (822)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcc-cc---cccch
Confidence 1111 222222 11121111222333333333332222222111 111122222221110 00 0000
Q ss_pred --------chhhhh-----hhchhhHhHH------HHHHHHHHhcCHHHHHHHHHHHHHhC---CCchhHHHHHHHHhhc
Q 000322 1250 --------SLEKET-----NLRSAHCFAV------NHIWCMAVLNGLECSMNLLEKYIKLY---PSCLELVLMKARLQKH 1307 (1670)
Q Consensus 1250 --------sla~~~-----~~kt~~~fKL------N~IR~lI~LEDse~A~~LfdklLk~~---P~d~eL~L~AAyL~~K 1307 (1670)
.++.-+ -.+.+...+. -.|--+...++...|+..|+.+-... |.-+.-++..+||..+
T Consensus 262 ~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~ 341 (822)
T PRK14574 262 ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR 341 (822)
T ss_pred hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC
Confidence 000000 0011111111 11222223669999999999998554 7777779999999888
Q ss_pred ccCCccHHHHHHHHHhCCCCCc--hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCC
Q 000322 1308 DFGDLSSVGFEEALIKWPKGVP--GIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSP 1385 (1670)
Q Consensus 1308 ~m~~~A~svle~AL~~~PkNa~--g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~ 1385 (1670)
. |++|..+|.+++...|...+ .-...-.-|.--.++.+++++|..++.+.....++ + +..+ .++..+
T Consensus 342 ~-P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~-~------~~~~-~~~~~~-- 410 (822)
T PRK14574 342 L-PEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPY-Q------VGVY-GLPGKE-- 410 (822)
T ss_pred C-cHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc-E------Eecc-CCCCCC--
Confidence 7 99999999999998753211 00111234566688999999999999886432221 0 0000 112221
Q ss_pred CCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccc
Q 000322 1386 ESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAP 1464 (1670)
Q Consensus 1386 es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeq 1464 (1670)
-+.|.. + ++...+.+....|++.+|...+|+.+..+|.| ..+++.+|-..+-.+. ...|++
T Consensus 411 -----pn~d~~-----~-----~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n--~~l~~~~A~v~~~Rg~-p~~A~~ 471 (822)
T PRK14574 411 -----PNDDWI-----E-----GQTLLVQSLVALNDLPTAQKKLEDLSSTAPAN--QNLRIALASIYLARDL-PRKAEQ 471 (822)
T ss_pred -----CCccHH-----H-----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCC-HHHHHH
Confidence 234422 2 23333333344899999999999999999999 9999999998877664 444444
No 18
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.33 E-value=6.8e-11 Score=142.21 Aligned_cols=381 Identities=15% Similarity=0.088 Sum_probs=269.3
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhH
Q 000322 1029 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAY 1104 (1670)
Q Consensus 1029 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~Y 1104 (1670)
.|+++.|+.+|..++|+.|+.+++|..++..+...+..+.+.+.|..|++++|++|- +..+--.. ||+
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~-----Grl--- 200 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAE-----GRL--- 200 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhh-----ccc---
Confidence 467899999999999999999999999999999999999999999999999999998 44332222 333
Q ss_pred HHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcc
Q 000322 1105 DAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKL 1184 (1670)
Q Consensus 1105 dkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~ 1184 (1670)
++|-..|-++.... |.- -=+|--|--++..+|++.-||+.++.-.. ..|+
T Consensus 201 ~ea~~cYlkAi~~q-p~f-------AiawsnLg~~f~~~Gei~~aiq~y~eAvk-----ldP~----------------- 250 (966)
T KOG4626|consen 201 EEAKACYLKAIETQ-PCF-------AIAWSNLGCVFNAQGEIWLAIQHYEEAVK-----LDPN----------------- 250 (966)
T ss_pred chhHHHHHHHHhhC-Cce-------eeeehhcchHHhhcchHHHHHHHHHHhhc-----CCCc-----------------
Confidence 56666665555444 321 22455566778889999999996644332 2331
Q ss_pred hhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhh---
Q 000322 1185 IFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAH--- 1261 (1670)
Q Consensus 1185 ~AWL~~iYllrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~--- 1261 (1670)
|.-.|-. +|++|--.+...+|... |.+.+..-|..|++.=.||.=||+ -|+-+++...++++..
T Consensus 251 -------f~dAYiN-LGnV~ke~~~~d~Avs~---Y~rAl~lrpn~A~a~gNla~iYye--qG~ldlAI~~Ykral~~~P 317 (966)
T KOG4626|consen 251 -------FLDAYIN-LGNVYKEARIFDRAVSC---YLRALNLRPNHAVAHGNLACIYYE--QGLLDLAIDTYKRALELQP 317 (966)
T ss_pred -------chHHHhh-HHHHHHHHhcchHHHHH---HHHHHhcCCcchhhccceEEEEec--cccHHHHHHHHHHHHhcCC
Confidence 3333545 58888888888999999 999999999999999999888998 4778888887666653
Q ss_pred HhHH--HHHHHH-HHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHH
Q 000322 1262 CFAV--NHIWCM-AVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWN 1336 (1670)
Q Consensus 1262 ~fKL--N~IR~l-I~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~ 1336 (1670)
.||. |-|... -..++.++|...|.++|.+||.-++- -|.-.|.+..+ -++|...|+.||+..|.=+. +.+
T Consensus 318 ~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~-~e~A~~ly~~al~v~p~~aa----a~n 392 (966)
T KOG4626|consen 318 NFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGK-IEEATRLYLKALEVFPEFAA----AHN 392 (966)
T ss_pred CchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcc-chHHHHHHHHHHhhChhhhh----hhh
Confidence 4444 214333 23779999999999999999999998 67777766664 88999999999999999998 999
Q ss_pred HHHHHHHHcCChHHHHHHHHH-------HHHhhhhccc------ccccchhhhcccCCCCCCCCCCCCCcccccccccch
Q 000322 1337 QYVEYALQNGRHDFAAELMDR-------WFHSVWKVQY------SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQM 1403 (1670)
Q Consensus 1337 QLIq~al~~en~d~Ai~Lc~~-------ff~gia~~Q~------~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~ 1403 (1670)
-|.-...++|++++|+.--++ |-.+....+. +-.+|+.-+-+.. ++ ++.+ .|-
T Consensus 393 NLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI-~~----nPt~-AeA-------- 458 (966)
T KOG4626|consen 393 NLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI-QI----NPTF-AEA-------- 458 (966)
T ss_pred hHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH-hc----CcHH-HHH--------
Confidence 999999999999999876655 3333333332 4444544443330 01 1111 221
Q ss_pred hhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHHHHHHhhhcccc
Q 000322 1404 DVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDRARSLP 1483 (1670)
Q Consensus 1404 d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~~~KtVsTYLDTAWILf 1483 (1670)
|+=|+-++-- .|+..||..+|+.||+.+|+=-=-.|=.=|+.=...+.. +-++.|-..+.+|.+-|. -|.||
T Consensus 459 ---hsNLasi~kD--sGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~--D~d~~~~kl~sivrdql~-~~rlp 530 (966)
T KOG4626|consen 459 ---HSNLASIYKD--SGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWT--DYDKRMKKLVSIVRDQLE-KNRLP 530 (966)
T ss_pred ---HhhHHHHhhc--cCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhccc--chHHHHHHHHHHHHHHHh-hhcCC
Confidence 2455666666 899999999999999999952114444444444445553 334444432233333331 26666
Q ss_pred cccc
Q 000322 1484 YLKL 1487 (1670)
Q Consensus 1484 ~~~~ 1487 (1670)
.--|
T Consensus 531 svhP 534 (966)
T KOG4626|consen 531 SVHP 534 (966)
T ss_pred ccCc
Confidence 6555
No 19
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=9.7e-09 Score=121.76 Aligned_cols=471 Identities=17% Similarity=0.157 Sum_probs=334.1
Q ss_pred hhhhhccccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCC
Q 000322 1002 NKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNE 1081 (1670)
Q Consensus 1002 ~~le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP 1081 (1670)
-+|...-++.+.||++|.--..|.. +.-|.+++.|||+.+-.+..+|..|+.+.++.+..+.+...+.+||..=|
T Consensus 64 d~irrnR~~~~~WikYaqwEesq~e-----~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lP 138 (677)
T KOG1915|consen 64 DQIRRNRLNMQVWIKYAQWEESQKE-----IQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILP 138 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcc
Confidence 3777788899999999988877754 69999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhccccc
Q 000322 1082 GSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPAT 1161 (1670)
Q Consensus 1082 ~NY~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al 1161 (1670)
.-..||.-|+-.+-+|+ +-..|+++|++-..-. || ...|+..+++....++++-|...+.|..-
T Consensus 139 RVdqlWyKY~ymEE~Lg----Ni~gaRqiferW~~w~-P~--------eqaW~sfI~fElRykeieraR~IYerfV~--- 202 (677)
T KOG1915|consen 139 RVDQLWYKYIYMEEMLG----NIAGARQIFERWMEWE-PD--------EQAWLSFIKFELRYKEIERARSIYERFVL--- 202 (677)
T ss_pred hHHHHHHHHHHHHHHhc----ccHHHHHHHHHHHcCC-Cc--------HHHHHHHHHHHHHhhHHHHHHHHHHHHhe---
Confidence 99999999998775555 6699999999988887 77 68999999999999999999998877774
Q ss_pred CCCCcccchHHHHHHhhccCCcchhhHHHHH-HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHH
Q 000322 1162 GSNDRHSLFLSDILTCLTISDKLIFWVCCVY-LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVN 1240 (1670)
Q Consensus 1162 ~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iY-llrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~smA~d 1240 (1670)
+.| +-..|+.+.- +.+.+.. .++..+++.|++
T Consensus 203 --~HP----------------~v~~wikyarFE~k~g~~-----------------------------~~aR~VyerAie 235 (677)
T KOG1915|consen 203 --VHP----------------KVSNWIKYARFEEKHGNV-----------------------------ALARSVYERAIE 235 (677)
T ss_pred --ecc----------------cHHHHHHHHHHHHhcCcH-----------------------------HHHHHHHHHHHH
Confidence 444 2225887764 5555544 678888888877
Q ss_pred HHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHH--hhcccCC----ccH
Q 000322 1241 SVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARL--QKHDFGD----LSS 1314 (1670)
Q Consensus 1241 YY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL--~~K~m~~----~A~ 1314 (1670)
+... +..+. .+-.-|+. +-......+.|+-+|.-++..-|.+-.-.|+..|+ +++-+.. +++
T Consensus 236 ~~~~----d~~~e----~lfvaFA~----fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~I 303 (677)
T KOG1915|consen 236 FLGD----DEEAE----ILFVAFAE----FEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAI 303 (677)
T ss_pred Hhhh----HHHHH----HHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHH
Confidence 7752 22111 11111211 11223378899999999999999998777888776 3443322 222
Q ss_pred -----HHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccc-ccccchhhhcccCCCCCCCCC
Q 000322 1315 -----VGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQY-SQVEISDPLVADMSHSSPEST 1388 (1670)
Q Consensus 1315 -----svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~-~~deALDaLrkgns~i~~es~ 1388 (1670)
..|+..+..+|-|.. .|.-|+.+.=..|+-+.+.++-++ .|+.+.. .....-
T Consensus 304 v~KRk~qYE~~v~~np~nYD----sWfdylrL~e~~g~~~~Ire~yEr---AIanvpp~~ekr~W--------------- 361 (677)
T KOG1915|consen 304 VGKRKFQYEKEVSKNPYNYD----SWFDYLRLEESVGDKDRIRETYER---AIANVPPASEKRYW--------------- 361 (677)
T ss_pred hhhhhhHHHHHHHhCCCCch----HHHHHHHHHHhcCCHHHHHHHHHH---HHccCCchhHHHHH---------------
Confidence 579999999999999 999999999999999999888766 3333322 000000
Q ss_pred CCCCcccccccccchhhHHHHHHH--HHH-HhhhcCHHHHHHHHHHHHhhccC--CcHHHHHHHHHHHHhcCCCCCCccc
Q 000322 1389 STSDPEFSVSNRNQMDVMFGYLNL--SLH-RLLQNDWNEARLAIDAALKAAAS--EHFKHCVREHAMLLLINESEPKEGA 1463 (1670)
Q Consensus 1389 s~~vSDfy~~~~~q~d~~fa~LGD--~L~-q~Lqg~~~EAfaAYDKALkanp~--N~~i~cLNNYAYFLS~e~~dL~KAe 1463 (1670)
--| .|||+ ++| .+.-.+.+.+...|..||+.=|- =.|--.|-=||.|.- ...+|.+|-
T Consensus 362 -----~RY-----------IYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feI-Rq~~l~~AR 424 (677)
T KOG1915|consen 362 -----RRY-----------IYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEI-RQLNLTGAR 424 (677)
T ss_pred -----HHH-----------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHH-HHcccHHHH
Confidence 013 45555 444 45567888899999999999993 456788999999975 344566555
Q ss_pred chhhhHHHHHHHHhhhcccccccccchhhhccccchhhHHHHhhhcCCCCCChhhHHHHHhhccCCCCcccccccccchh
Q 000322 1464 PISWQLKLLNSYLDRARSLPYLKLLPRQFINNIERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLV 1543 (1670)
Q Consensus 1464 qMS~~~KtVsTYLDTAWILf~~~~lARiYI~~i~k~rv~~liDqaL~~~S~dss~~nkALE~W~g~slLpqKI~~kKyi~ 1543 (1670)
++=. +.| -.| -+..+=|.|| +++..|.-... -.
T Consensus 425 kiLG--~AI----G~c----PK~KlFk~YI------------------------elElqL~efDR-------------cR 457 (677)
T KOG1915|consen 425 KILG--NAI----GKC----PKDKLFKGYI------------------------ELELQLREFDR-------------CR 457 (677)
T ss_pred HHHH--HHh----ccC----CchhHHHHHH------------------------HHHHHHhhHHH-------------HH
Confidence 4222 111 000 0001335566 23333332210 12
Q ss_pred HHHHHHHhhcCcchhhHHHHHHHhhccCCCCCCCCCchhHHHHHhhhhhhhhhccCCCCchHHHHHHHHHhhhchhHHHH
Q 000322 1544 DFVEGIMEIVPSNYQLAFSVFKLLNKDHNPNITDAVPESVLFWASSSLVSAIFHAVPVAPEYVWVEAAGILGNISSIEEI 1623 (1670)
Q Consensus 1544 dfVE~ime~~P~Ny~Lal~v~kll~k~~~~~~~d~~s~~~~fwA~s~l~~ai~~a~pvape~vWveaa~~l~~l~~~~~i 1623 (1670)
..-|+++|.-|.|-.-=+..+-|...- +-..- |..+.-=||.+-.--.||-+|.--+++.=.....+.-
T Consensus 458 kLYEkfle~~Pe~c~~W~kyaElE~~L-------gdtdR----aRaifelAi~qp~ldmpellwkaYIdFEi~~~E~eka 526 (677)
T KOG1915|consen 458 KLYEKFLEFSPENCYAWSKYAELETSL-------GDTDR----ARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKA 526 (677)
T ss_pred HHHHHHHhcChHhhHHHHHHHHHHHHh-------hhHHH----HHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHH
Confidence 356777888888877666555544321 11111 2222223444434457999999999998888876665
Q ss_pred HHHHHHhhhccccchHHHHHHHHhhhcc
Q 000322 1624 SERFFKRALSVYPFSIKLWKCYYDLSKT 1651 (1670)
Q Consensus 1624 ~~rfy~~AlsvyPfS~~LW~~y~~~~~~ 1651 (1670)
+-+|++-|.--+.+- .|-.+-+|+.+
T Consensus 527 -R~LYerlL~rt~h~k-vWisFA~fe~s 552 (677)
T KOG1915|consen 527 -RALYERLLDRTQHVK-VWISFAKFEAS 552 (677)
T ss_pred -HHHHHHHHHhcccch-HHHhHHHHhcc
Confidence 999999998877765 99999999983
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.31 E-value=6.4e-10 Score=144.21 Aligned_cols=187 Identities=6% Similarity=-0.073 Sum_probs=130.5
Q ss_pred CHHHHHHHHHHHHHhCCCchhHHHHHHHH-hhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHH
Q 000322 1276 GLECSMNLLEKYIKLYPSCLELVLMKARL-QKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAEL 1354 (1670)
Q Consensus 1276 Dse~A~~LfdklLk~~P~d~eL~L~AAyL-~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~L 1354 (1670)
+.++|+..|.++++..|.+.. .|..++. ...+..++|+..|++++...|.+ . .|.++...+++.|++++|+..
T Consensus 491 ~~~eAi~a~~~Al~~~Pd~~~-~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~----a~~~la~all~~Gd~~eA~~~ 564 (987)
T PRK09782 491 LPGVALYAWLQAEQRQPDAWQ-HRAVAYQAYQVEDYATALAAWQKISLHDMSN-E----DLLAAANTAQAAGNGAARDRW 564 (987)
T ss_pred CcHHHHHHHHHHHHhCCchHH-HHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-H----HHHHHHHHHHHCCCHHHHHHH
Confidence 344677777777777776544 3333332 23333667777777776665553 3 467777778888888888888
Q ss_pred HHHHH----------Hhhhhcc---cccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcC
Q 000322 1355 MDRWF----------HSVWKVQ---YSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQND 1421 (1670)
Q Consensus 1355 c~~ff----------~gia~~Q---~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~ 1421 (1670)
+++.. ..++... .+.++|+..+++....- +. .+.| .-+|.++.+ .|+
T Consensus 565 l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~-----P~--~~a~-----------~~LA~~l~~--lG~ 624 (987)
T PRK09782 565 LQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA-----PS--ANAY-----------VARATIYRQ--RHN 624 (987)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-----CC--HHHH-----------HHHHHHHHH--CCC
Confidence 87611 1223233 47888888888764331 11 3444 567778888 999
Q ss_pred HHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHH------HHHHhh-hcccccccc--cchhh
Q 000322 1422 WNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLL------NSYLDR-ARSLPYLKL--LPRQF 1492 (1670)
Q Consensus 1422 ~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~~~KtV------sTYLDT-AWILf~~~~--lARiY 1492 (1670)
.++|..+|++||..+|++ ...+++++++|...+ +.++|..+-. +.+ ..++.. ||++...++ +|..+
T Consensus 625 ~deA~~~l~~AL~l~Pd~--~~a~~nLG~aL~~~G-~~eeAi~~l~--~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~ 699 (987)
T PRK09782 625 VPAAVSDLRAALELEPNN--SNYQAALGYALWDSG-DIAQSREMLE--RAHKGLPDDPALIRQLAYVNQRLDDMAATQHY 699 (987)
T ss_pred HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCC-CHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999 899999999988765 3666666444 555 455555 999999999 88888
Q ss_pred h
Q 000322 1493 I 1493 (1670)
Q Consensus 1493 I 1493 (1670)
+
T Consensus 700 l 700 (987)
T PRK09782 700 A 700 (987)
T ss_pred H
Confidence 8
No 21
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.31 E-value=1.7e-12 Score=143.73 Aligned_cols=260 Identities=16% Similarity=0.165 Sum_probs=104.4
Q ss_pred HHHHHHHHHhcccccchhhHHHHHHHHHHHH-Hh-CCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHH
Q 000322 1013 QCVEMALLILNQDANKLEGMKKALSLLSRAL-EA-DPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMY 1090 (1670)
Q Consensus 1013 lWLelAl~~Lnq~~n~~g~ydAALdLLsrAL-EI-NPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmY 1090 (1670)
..|.+|..++.. |++++|+.+|...+ .+ .|++++.|..++.+....+....+.++|++.++.++.+......+
T Consensus 10 ~~l~~A~~~~~~-----~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l 84 (280)
T PF13429_consen 10 EALRLARLLYQR-----GDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERL 84 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccc-----ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 445667777755 55699999996554 55 599999999999999999999999999999999988766522222
Q ss_pred ---HhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcc
Q 000322 1091 ---INSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRH 1167 (1670)
Q Consensus 1091 ---Insr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~ 1167 (1670)
+..+ .|++|+.+++.....+ ++ .+.|..++++|...|+++++...|..++. ...
T Consensus 85 ~~l~~~~--------~~~~A~~~~~~~~~~~-~~--------~~~l~~~l~~~~~~~~~~~~~~~l~~~~~--~~~---- 141 (280)
T PF13429_consen 85 IQLLQDG--------DPEEALKLAEKAYERD-GD--------PRYLLSALQLYYRLGDYDEAEELLEKLEE--LPA---- 141 (280)
T ss_dssp --------------------------------------------------H-HHHTT-HHHHHHHHHHHHH---T-----
T ss_pred ccccccc--------cccccccccccccccc-cc--------cchhhHHHHHHHHHhHHHHHHHHHHHHHh--ccC----
Confidence 3344 7899999998888776 45 57788899999999999999998888774 111
Q ss_pred cchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcC
Q 000322 1168 SLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSN 1247 (1670)
Q Consensus 1168 ~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~n 1247 (1670)
..+. ..|-.+.|.++.+.|..++|..+ +.++++.+|++..++..+
T Consensus 142 ------------~~~~----------~~~~~~~a~~~~~~G~~~~A~~~---~~~al~~~P~~~~~~~~l---------- 186 (280)
T PF13429_consen 142 ------------APDS----------ARFWLALAEIYEQLGDPDKALRD---YRKALELDPDDPDARNAL---------- 186 (280)
T ss_dssp --------------T-----------HHHHHHHHHHHHHCCHHHHHHHH---HHHHHHH-TT-HHHHHHH----------
T ss_pred ------------CCCC----------HHHHHHHHHHHHHcCCHHHHHHH---HHHHHHcCCCCHHHHHHH----------
Confidence 0111 22333467788889999999999 888889899888877665
Q ss_pred CcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHHhCC
Q 000322 1248 GESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWP 1325 (1670)
Q Consensus 1248 desla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~~~P 1325 (1670)
+..+|..++.++++.++..+.+..|.+..+ .+..+|+..++ +++|+..|++++..+|
T Consensus 187 --------------------~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~-~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 187 --------------------AWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR-YEEALEYLEKALKLNP 245 (280)
T ss_dssp --------------------HHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT--HHHHHHHHHHHHHHST
T ss_pred --------------------HHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc-cccccccccccccccc
Confidence 334455667777888999999999999999 67777777665 9999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000322 1326 KGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFH 1360 (1670)
Q Consensus 1326 kNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~ 1360 (1670)
+++. ....|+......|+.++|.++-++.+.
T Consensus 246 ~d~~----~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPL----WLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HH----HHHHHHHHHT-----------------
T ss_pred cccc----ccccccccccccccccccccccccccc
Confidence 9999 888999999999999999998877544
No 22
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.28 E-value=1.2e-09 Score=136.94 Aligned_cols=463 Identities=14% Similarity=0.136 Sum_probs=291.7
Q ss_pred cccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhC-------
Q 000322 1008 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHN------- 1080 (1670)
Q Consensus 1008 ~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVeln------- 1080 (1670)
|..+...+-|+.-.+++.. ++.|+.|+.+|++|..+||.+|.+..+|+.+|+..++-+.+....++|+...
T Consensus 230 p~~v~alv~L~~~~l~~~d--~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~a 307 (1018)
T KOG2002|consen 230 PTCVSALVALGEVDLNFND--SDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKA 307 (1018)
T ss_pred hhhHHHHHHHHHHHHHccc--hHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHH
Confidence 5777888877777776654 5889999999999999999999999999999999999999999999998766
Q ss_pred CCCHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccc
Q 000322 1081 EGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPA 1160 (1670)
Q Consensus 1081 P~NY~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~A 1160 (1670)
...||++-+|=.++ +|++|-..|.+..... ++. . +=.++=+.|.|...|+++.++.+..++..
T Consensus 308 es~Y~~gRs~Ha~G--------d~ekA~~yY~~s~k~~-~d~-----~-~l~~~GlgQm~i~~~dle~s~~~fEkv~k-- 370 (1018)
T KOG2002|consen 308 ESFYQLGRSYHAQG--------DFEKAFKYYMESLKAD-NDN-----F-VLPLVGLGQMYIKRGDLEESKFCFEKVLK-- 370 (1018)
T ss_pred HHHHHHHHHHHhhc--------cHHHHHHHHHHHHccC-CCC-----c-cccccchhHHHHHhchHHHHHHHHHHHHH--
Confidence 23567999999999 9999999998877776 442 1 22456788999999999999998888875
Q ss_pred cCCCCcccchHHHHHHhhccCC-c--chhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCccc-chhhHHHHHHHHH
Q 000322 1161 TGSNDRHSLFLSDILTCLTISD-K--LIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQL-EDDEKQRAIKLIE 1236 (1670)
Q Consensus 1161 l~g~sE~~lSLsKi~~YLt~sD-R--~~AWL~~iYllrYrvLPGn~y~q~e~~KEAf~I~W~y~~v-lkdEPdnalAL~s 1236 (1670)
. .|...-.-+|.-||-... + .+...+-.| .|...-+.-+.-++|.. ..++ ...||--.+-.+.
T Consensus 371 ~---~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~-------l~K~~~~~~~d~~a~l~---laql~e~~d~~~sL~~~~ 437 (1018)
T KOG2002|consen 371 Q---LPNNYETMKILGCLYAHSAKKQEKRDKASNV-------LGKVLEQTPVDSEAWLE---LAQLLEQTDPWASLDAYG 437 (1018)
T ss_pred h---CcchHHHHHHHHhHHHhhhhhhHHHHHHHHH-------HHHHHhcccccHHHHHH---HHHHHHhcChHHHHHHHH
Confidence 2 221111223443332222 1 111222222 23333333344444332 2222 3456666677777
Q ss_pred HHHHHHhhhcCCcchhhhhhhchhhHhHH---HHHHHHHH-hcCHHHHHHHHHHHHHhCC-----Cc---hhH---HHHH
Q 000322 1237 MAVNSVELYSNGESLEKETNLRSAHCFAV---NHIWCMAV-LNGLECSMNLLEKYIKLYP-----SC---LEL---VLMK 1301 (1670)
Q Consensus 1237 mA~dYY~~~~ndesla~~~~~kt~~~fKL---N~IR~lI~-LEDse~A~~LfdklLk~~P-----~d---~eL---~L~A 1301 (1670)
+|.+.+.. .+ -+ +|. |-+..+.. ++..+.|...|+.++..+- +. +.| -..|
T Consensus 438 ~A~d~L~~-~~------------~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 438 NALDILES-KG------------KQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HHHHHHHH-cC------------CC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 77666653 22 11 444 22444433 7788999999998887722 22 223 3344
Q ss_pred HHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH------------HHHhhhhccc--
Q 000322 1302 ARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR------------WFHSVWKVQY-- 1367 (1670)
Q Consensus 1302 AyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~------------ff~gia~~Q~-- 1367 (1670)
..++.-++.+.|-..|..++...|.-.. ++.-|.-++..+++..+|+.+++. -|.|.++..+
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkehp~YId----~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEHPGYID----AYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHCchhHH----HHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhh
Confidence 4455555677888999999998887666 666777778888888888888887 4445444444
Q ss_pred ---ccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHH------HHHHhhh------cCHHHHHHHHHHH
Q 000322 1368 ---SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNL------SLHRLLQ------NDWNEARLAIDAA 1432 (1670)
Q Consensus 1368 ---~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD------~L~q~Lq------g~~~EAfaAYDKA 1432 (1670)
-+....-++++.... .|-| ++|++ .+|+|-. +..++|+..|.++
T Consensus 580 ~~~a~k~f~~i~~~~~~~----------~D~Y-----------sliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kv 638 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTK----------TDAY-----------SLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKV 638 (1018)
T ss_pred hcccccHHHHHHhhhccC----------Cchh-----------HHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHH
Confidence 222222233322111 6778 55555 3333333 3478899999999
Q ss_pred HhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHHH--------HHHhhhcccccccccchhhhccccchhhHHH
Q 000322 1433 LKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLN--------SYLDRARSLPYLKLLPRQFINNIERPRLQQL 1504 (1670)
Q Consensus 1433 Lkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~~~KtVs--------TYLDTAWILf~~~~lARiYI~~i~k~rv~~l 1504 (1670)
|.-+|.| +.|=|=-+--|+..+. +.+|-. .|.-|. +||+-|-+++.++ .|+. --|.
T Consensus 639 L~~dpkN--~yAANGIgiVLA~kg~-~~~A~d---IFsqVrEa~~~~~dv~lNlah~~~e~~----qy~~------AIqm 702 (1018)
T KOG2002|consen 639 LRNDPKN--MYAANGIGIVLAEKGR-FSEARD---IFSQVREATSDFEDVWLNLAHCYVEQG----QYRL------AIQM 702 (1018)
T ss_pred HhcCcch--hhhccchhhhhhhccC-chHHHH---HHHHHHHHHhhCCceeeeHHHHHHHHH----HHHH------HHHH
Confidence 9999999 8888888888887664 666655 444442 2333344555553 3331 1122
Q ss_pred HhhhcCCC--CCChhhHHHHHhhccCCCCcccccccccchhHHHHHHHhhcCcchhhHHHHH
Q 000322 1505 IDNLLSPV--SSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVF 1564 (1670)
Q Consensus 1505 iDqaL~~~--S~dss~~nkALE~W~g~slLpqKI~~kKyi~dfVE~ime~~P~Ny~Lal~v~ 1564 (1670)
-++.|+.. ..++....---+.|+.... -+.-+.-+...++..|+|+.|-+-++
T Consensus 703 Ye~~lkkf~~~~~~~vl~~Lara~y~~~~-------~~eak~~ll~a~~~~p~~~~v~FN~a 757 (1018)
T KOG2002|consen 703 YENCLKKFYKKNRSEVLHYLARAWYEAGK-------LQEAKEALLKARHLAPSNTSVKFNLA 757 (1018)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHhCCccchHHhHHH
Confidence 23444441 2223333334445642211 12234666777899999988665444
No 23
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.23 E-value=1e-09 Score=125.30 Aligned_cols=274 Identities=14% Similarity=0.098 Sum_probs=191.5
Q ss_pred hhccccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhCCCCchHHHHHHHHHhhC
Q 000322 1005 KQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS----EILWITYLLIFYSNTNSVGKDDMFSYSVKHN 1080 (1670)
Q Consensus 1005 e~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtS----aeaWy~yl~lY~~~~~~eea~emlekAVeln 1080 (1670)
+..|.+.+.|..+|..+... |+++.|+.++..+++..+.. ..+|+.++.+|...+....+...|+++++.+
T Consensus 63 ~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 137 (389)
T PRK11788 63 KVDPETVELHLALGNLFRRR-----GEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG 137 (389)
T ss_pred hcCcccHHHHHHHHHHHHHc-----CcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC
Confidence 34466778899988888766 45699999999999864433 3688999999999999999999999999998
Q ss_pred CCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhh
Q 000322 1081 EGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRL 1156 (1670)
Q Consensus 1081 P~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rL 1156 (1670)
|.+.. ++.+|...+ .|++|++.|..+.+.. +.. ....+..++..+..+|...|++++|+..+.++
T Consensus 138 ~~~~~~~~~la~~~~~~g--------~~~~A~~~~~~~~~~~-~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 206 (389)
T PRK11788 138 DFAEGALQQLLEIYQQEK--------DWQKAIDVAERLEKLG-GDS--LRVEIAHFYCELAQQALARGDLDAARALLKKA 206 (389)
T ss_pred cchHHHHHHHHHHHHHhc--------hHHHHHHHHHHHHHhc-CCc--chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 87765 677888888 8999999999988766 332 11233445678889999999999999988777
Q ss_pred cccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHH-HHH
Q 000322 1157 LIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAI-KLI 1235 (1670)
Q Consensus 1157 Eq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnal-AL~ 1235 (1670)
.. ..|. + .....+++.+|...|..++|..+ +.++++.+|++.. ++.
T Consensus 207 l~-----~~p~--------------~-----------~~~~~~la~~~~~~g~~~~A~~~---~~~~~~~~p~~~~~~~~ 253 (389)
T PRK11788 207 LA-----ADPQ--------------C-----------VRASILLGDLALAQGDYAAAIEA---LERVEEQDPEYLSEVLP 253 (389)
T ss_pred Hh-----HCcC--------------C-----------HHHHHHHHHHHHHCCCHHHHHHH---HHHHHHHChhhHHHHHH
Confidence 64 1221 0 00112367778888888888888 8888887887643 333
Q ss_pred HHHHHHHhhhcCCcchhhhhhhch-----hhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhhcc-
Q 000322 1236 EMAVNSVELYSNGESLEKETNLRS-----AHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHD- 1308 (1670)
Q Consensus 1236 smA~dYY~~~~ndesla~~~~~kt-----~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~K~- 1308 (1670)
.++ ..|.. .|+.+.+...-.++ ....-+.....+...++.++|+.+|.++++..|++..+ .++..++...+
T Consensus 254 ~l~-~~~~~-~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~ 331 (389)
T PRK11788 254 KLM-ECYQA-LGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEE 331 (389)
T ss_pred HHH-HHHHH-cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCC
Confidence 443 33333 44444443331111 11111333444455779999999999999999999998 56666664432
Q ss_pred -cCCccHHHHHHHHHhCCCCCc
Q 000322 1309 -FGDLSSVGFEEALIKWPKGVP 1329 (1670)
Q Consensus 1309 -m~~~A~svle~AL~~~PkNa~ 1329 (1670)
...+++.+|++.+..-.+..|
T Consensus 332 g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 332 GRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred ccchhHHHHHHHHHHHHHhCCC
Confidence 366788888877754434344
No 24
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.17 E-value=6.9e-11 Score=150.33 Aligned_cols=145 Identities=7% Similarity=-0.024 Sum_probs=109.0
Q ss_pred HHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH------------HHHhhhhccc-ccccchhhhcccCCCCCCC
Q 000322 1320 ALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR------------WFHSVWKVQY-SQVEISDPLVADMSHSSPE 1386 (1670)
Q Consensus 1320 AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~------------ff~gia~~Q~-~~deALDaLrkgns~i~~e 1386 (1670)
+....|.|.. +|.|||..+.+.+++++|+++|++ ||.|+-+++. +.+.+.-+ .+..-.+.+
T Consensus 23 ~~~~~p~n~~----a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~ 96 (906)
T PRK14720 23 ANNYSLSKFK----ELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN 96 (906)
T ss_pred cccCCcchHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc
Confidence 4566788888 999999999999999999999999 8888866666 44443333 233333445
Q ss_pred CCCCCCcccccccccchhhHHHHH--HHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccc
Q 000322 1387 STSTSDPEFSVSNRNQMDVMFGYL--NLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAP 1464 (1670)
Q Consensus 1387 s~s~~vSDfy~~~~~q~d~~fa~L--GD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeq 1464 (1670)
.+..+++++|.+--.--+--+++. ++||=+ .|+.+||+++||++|+++|.| .+||||||||++.. +|+||.+
T Consensus 97 ~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk--~g~~~ka~~~yer~L~~D~~n--~~aLNn~AY~~ae~--dL~KA~~ 170 (906)
T PRK14720 97 LKWAIVEHICDKILLYGENKLALRTLAEAYAK--LNENKKLKGVWERLVKADRDN--PEIVKKLATSYEEE--DKEKAIT 170 (906)
T ss_pred cchhHHHHHHHHHHhhhhhhHHHHHHHHHHHH--cCChHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHh--hHHHHHH
Confidence 555677877711111001111222 224444 599999999999999999999 99999999999999 9999999
Q ss_pred hhhhHHHHHHHHhh
Q 000322 1465 ISWQLKLLNSYLDR 1478 (1670)
Q Consensus 1465 MS~~~KtVsTYLDT 1478 (1670)
|+. |+|.+|+|+
T Consensus 171 m~~--KAV~~~i~~ 182 (906)
T PRK14720 171 YLK--KAIYRFIKK 182 (906)
T ss_pred HHH--HHHHHHHhh
Confidence 999 999999997
No 25
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.16 E-value=5.3e-08 Score=122.15 Aligned_cols=574 Identities=15% Similarity=0.145 Sum_probs=313.9
Q ss_pred cHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHH
Q 000322 1010 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLM 1089 (1670)
Q Consensus 1010 d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~Lwlm 1089 (1670)
+.+..|-.|.....+ |+++.|.-++.-++..+|.++++|+.|+.+|-++|.-+.+....-.|.-++|.++.+|-.
T Consensus 138 ~l~~ll~eAN~lfar-----g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ 212 (895)
T KOG2076|consen 138 ELRQLLGEANNLFAR-----GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKR 212 (895)
T ss_pred HHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHH
Confidence 456777777776666 567999999999999999999999999999999998888899999999999999998855
Q ss_pred HHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCC--cc
Q 000322 1090 YINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND--RH 1167 (1670)
Q Consensus 1090 YInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~s--E~ 1167 (1670)
....-..++ .++.|+-.|-++.+.+ |++ -..++-.+.||..+|.+..|..+.-+|++ ..+.. ++
T Consensus 213 ladls~~~~----~i~qA~~cy~rAI~~~-p~n-------~~~~~ers~L~~~~G~~~~Am~~f~~l~~--~~p~~d~er 278 (895)
T KOG2076|consen 213 LADLSEQLG----NINQARYCYSRAIQAN-PSN-------WELIYERSSLYQKTGDLKRAMETFLQLLQ--LDPPVDIER 278 (895)
T ss_pred HHHHHHhcc----cHHHHHHHHHHHHhcC-Ccc-------hHHHHHHHHHHHHhChHHHHHHHHHHHHh--hCCchhHHH
Confidence 444332333 7899999999999999 454 78999999999999999999999999998 44311 10
Q ss_pred --cchHHHHHHhhccCCcchhhHH-HHHHH----Hh----hccchHHHhhhhh---------------------------
Q 000322 1168 --SLFLSDILTCLTISDKLIFWVC-CVYLV----IY----RKLPDAVLQLLEC--------------------------- 1209 (1670)
Q Consensus 1168 --~lSLsKi~~YLt~sDR~~AWL~-~iYll----rY----rvLPGn~y~q~e~--------------------------- 1209 (1670)
++---.++.|.+.+++..||=+ .-|.. ++ -.+...+|+-+..
T Consensus 279 ~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~ 358 (895)
T KOG2076|consen 279 IEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE 358 (895)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh
Confidence 1222236678888888666211 01100 00 0112222222221
Q ss_pred -------------hhhhhccCC-C----Ccccchhh---------------HHHHHHHHHHHHHHHhhhcCCcchhhhh-
Q 000322 1210 -------------EKELFAIDW-P----PVQLEDDE---------------KQRAIKLIEMAVNSVELYSNGESLEKET- 1255 (1670)
Q Consensus 1210 -------------~KEAf~I~W-~----y~~vlkdE---------------PdnalAL~smA~dYY~~~~ndesla~~~- 1255 (1670)
++..+.|+= + ..++-..+ |+...-|+-..++.|.. .+.-..+-..
T Consensus 359 ~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~-~~~~~~Al~~l 437 (895)
T KOG2076|consen 359 RRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTN-IGKYKEALRLL 437 (895)
T ss_pred hccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHh-cccHHHHHHHH
Confidence 111122211 0 00111111 21111121111232321 1111111111
Q ss_pred ----hhchhhHhHH--HHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHHhCCCC
Q 000322 1256 ----NLRSAHCFAV--NHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKG 1327 (1670)
Q Consensus 1256 ----~~kt~~~fKL--N~IR~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~~~PkN 1327 (1670)
+....+..-+ .+.+||..++.-+.|+..|.++|...|.+.+. .|.+.| +..+.+++|..+++..+.-+|++
T Consensus 438 ~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~-~~~g~~EkalEtL~~~~~~D~~~ 516 (895)
T KOG2076|consen 438 SPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLY-QQLGNHEKALETLEQIINPDGRN 516 (895)
T ss_pred HHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHH-HhcCCHHHHHHHHhcccCCCccc
Confidence 2223333222 56799888889999999999999999999999 444444 44444999999999888555555
Q ss_pred CchHHHHHHH-------HHHHHHHcCChHHHHHHHHH----HHHhhhhccc-ccccchhhhc--------------ccCC
Q 000322 1328 VPGIQCIWNQ-------YVEYALQNGRHDFAAELMDR----WFHSVWKVQY-SQVEISDPLV--------------ADMS 1381 (1670)
Q Consensus 1328 a~g~~caW~Q-------LIq~al~~en~d~Ai~Lc~~----ff~gia~~Q~-~~deALDaLr--------------kgns 1381 (1670)
++ .|+|.+ +.......|+.++=+.+... |+.-..-.+. ++.+..-..+ .+..
T Consensus 517 ~e--~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~ 594 (895)
T KOG2076|consen 517 AE--ACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRARE 594 (895)
T ss_pred hh--hccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHh
Confidence 55 444433 34455566676665555544 2222111111 0111111111 0000
Q ss_pred CCCC-------CCCCC--CCcccccccccchhhH---HHHHHHHHHHhhhcCHHHHHHHHHHHHhhccC--CcHHH-HHH
Q 000322 1382 HSSP-------ESTST--SDPEFSVSNRNQMDVM---FGYLNLSLHRLLQNDWNEARLAIDAALKAAAS--EHFKH-CVR 1446 (1670)
Q Consensus 1382 ~i~~-------es~s~--~vSDfy~~~~~q~d~~---fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~--N~~i~-cLN 1446 (1670)
..+. -.+.. ..+++- .-.+|-. |.-+=++|.. .++++||......|+.+.-. -.-+- -|.
T Consensus 595 k~~~~~~~~~~l~d~~~~~~~e~~---~Lsiddwfel~~e~i~~L~k--~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~ 669 (895)
T KOG2076|consen 595 KATDDNVMEKALSDGTEFRAVELR---GLSIDDWFELFRELILSLAK--LQRVQEALSVVFTALEAYIFFQDSEIRKELQ 669 (895)
T ss_pred ccCchHHhhhcccchhhhhhhhhc---cCcHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHhhhhhhccHHHHHHHH
Confidence 0000 00110 001110 0112222 3333447777 99999999999999988772 11133 344
Q ss_pred HHHHHHhcCCCCCCcccchhhhHHHH----HHHHhh----hcccccccccchhhhccccchhhHHHHhhhcCCCCCChhh
Q 000322 1447 EHAMLLLINESEPKEGAPISWQLKLL----NSYLDR----ARSLPYLKLLPRQFINNIERPRLQQLIDNLLSPVSSDFSL 1518 (1670)
Q Consensus 1447 NYAYFLS~e~~dL~KAeqMS~~~KtV----sTYLDT----AWILf~~~~lARiYI~~i~k~rv~~liDqaL~~~S~dss~ 1518 (1670)
.-.++.++...+-..|.. + ++-+ --|+|+ .|.| --..+++.+..-+..-||-.++.+...++
T Consensus 670 ~~~l~~s~~~~d~~~a~~--~-lR~~i~~~~~~~~~~q~~l~n~-----~~s~~~~~~q~v~~~R~~~~~~~~~~~~~-- 739 (895)
T KOG2076|consen 670 FLGLKASLYARDPGDAFS--Y-LRSVITQFQFYLDVYQLNLWNL-----DFSYFSKYGQRVCYLRLIMRLLVKNKDDT-- 739 (895)
T ss_pred HHHHHHHHhcCCHHHHHH--H-HHHHHHHHhhhhhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhccCccCC--
Confidence 444555565555555443 2 3322 224554 5775 11333334444444444444555433221
Q ss_pred HHHHHhhccCC-CCcccccccccchhHHHHHHHhhcCcch----hhHHHHHH------HhhccCCCCCCCCCchhHHHHH
Q 000322 1519 VNLVLEVCYGP-SLLPRNFSKLKDLVDFVEGIMEIVPSNY----QLAFSVFK------LLNKDHNPNITDAVPESVLFWA 1587 (1670)
Q Consensus 1519 ~nkALE~W~g~-slLpqKI~~kKyi~dfVE~ime~~P~Ny----~Lal~v~k------ll~k~~~~~~~d~~s~~~~fwA 1587 (1670)
.+|-+-+|- .++...+ |+-...-=++-..+|.+. -||+++.- ...+|+. -+++
T Consensus 740 --~~l~~i~gh~~~~~~s~---~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~-----------i~qG 803 (895)
T KOG2076|consen 740 --PPLALIYGHNLFVNASF---KHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQ-----------IAQG 803 (895)
T ss_pred --cceeeeechhHhhccch---HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHH-----------HHHH
Confidence 122222111 0111111 111122223445677744 44444332 2333333 4566
Q ss_pred hhhh--hhhhhccCCCCchHHHHHHHHHhhhchhHHHHHHHHHHhhhccccchHH
Q 000322 1588 SSSL--VSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPFSIK 1640 (1670)
Q Consensus 1588 ~s~l--~~ai~~a~pvape~vWveaa~~l~~l~~~~~i~~rfy~~AlsvyPfS~~ 1640 (1670)
.++| +.-+..+- -.-|.... -|-..++ .|+..++..||.+||.++|.+..
T Consensus 804 ~afL~RY~~lR~~~-~~QEa~YN-igRayh~-~gl~~LA~~YYekvL~~~p~~~~ 855 (895)
T KOG2076|consen 804 FAFLKRYKELRRCE-EKQEAFYN-IGRAYHQ-IGLVHLAVSYYEKVLEVSPKDVT 855 (895)
T ss_pred HHHHHHHHHhhccH-HHHHHHHH-HHHHHHH-cccHHHHHHHHHHHhCCCccccc
Confidence 6677 67765111 11233333 3344444 58899999999999999998753
No 26
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.15 E-value=1.9e-08 Score=118.63 Aligned_cols=288 Identities=9% Similarity=0.071 Sum_probs=199.1
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HhCCCCchHHHHHHHHHhhCCCCHH-----HHHHHHhcCCCcccchh
Q 000322 1029 LEGMKKALSLLSRALEADPTSEILWITYLLIF-YSNTNSVGKDDMFSYSVKHNEGSYA-----LWLMYINSRTPLNHRLD 1102 (1670)
Q Consensus 1029 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY-~~~~~~eea~emlekAVelnP~NY~-----LwlmYInsr~slddrl~ 1102 (1670)
.|+++.|..++.++-+.. +.+.++|.++... .++++.+.++++|++|++.+|++.. .+.+|+..+
T Consensus 97 eGd~~~A~k~l~~~~~~~-~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g-------- 167 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA-EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARN-------- 167 (398)
T ss_pred CCCHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCC--------
Confidence 488999996666655442 2367777775555 7888899999999999999999864 367999999
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCC
Q 000322 1103 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISD 1182 (1670)
Q Consensus 1103 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sD 1182 (1670)
.|+.|+..|+++.+.. |+. .+++..+.++|.+.|+++.|+.++.+|.. ....++
T Consensus 168 ~~~~Al~~l~~~~~~~-P~~-------~~al~ll~~~~~~~gdw~~a~~~l~~l~k--~~~~~~---------------- 221 (398)
T PRK10747 168 ENHAARHGVDKLLEVA-PRH-------PEVLRLAEQAYIRTGAWSSLLDILPSMAK--AHVGDE---------------- 221 (398)
T ss_pred CHHHHHHHHHHHHhcC-CCC-------HHHHHHHHHHHHHHHhHHHHHHHHHHHHH--cCCCCH----------------
Confidence 9999999999999998 666 89999999999999999999999988886 111111
Q ss_pred cchhhHH-HHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhh
Q 000322 1183 KLIFWVC-CVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAH 1261 (1670)
Q Consensus 1183 R~~AWL~-~iYllrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~ 1261 (1670)
....-+. ..| ..+....... ...+++.=-|. .+.+..|++ .
T Consensus 222 ~~~~~l~~~a~----~~l~~~~~~~--~~~~~l~~~w~--~lp~~~~~~------------------------------~ 263 (398)
T PRK10747 222 EHRAMLEQQAW----IGLMDQAMAD--QGSEGLKRWWK--NQSRKTRHQ------------------------------V 263 (398)
T ss_pred HHHHHHHHHHH----HHHHHHHHHh--cCHHHHHHHHH--hCCHHHhCC------------------------------H
Confidence 0000000 011 1110000000 00111110000 011111111 2
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHH
Q 000322 1262 CFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEY 1341 (1670)
Q Consensus 1262 ~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~ 1341 (1670)
..-+.+.+.++..++.++|..++.+.++. |.+.++.+...++...+ +.+++..++..+...|+++. .+..+.+.
T Consensus 264 ~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l~~~~-~~~al~~~e~~lk~~P~~~~----l~l~lgrl 337 (398)
T PRK10747 264 ALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRLKTNN-PEQLEKVLRQQIKQHGDTPL----LWSTLGQL 337 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhccCCC-hHHHHHHHHHHHhhCCCCHH----HHHHHHHH
Confidence 22233456667788999999999999995 55778866666665544 78899999999999999999 77788999
Q ss_pred HHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcC
Q 000322 1342 ALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQND 1421 (1670)
Q Consensus 1342 al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~ 1421 (1670)
+++.++|++|....++.. . ..| | +..+..|+.++-+ .|+
T Consensus 338 ~~~~~~~~~A~~~le~al-----------------~--~~P-----------~---------~~~~~~La~~~~~--~g~ 376 (398)
T PRK10747 338 LMKHGEWQEASLAFRAAL-----------------K--QRP-----------D---------AYDYAWLADALDR--LHK 376 (398)
T ss_pred HHHCCCHHHHHHHHHHHH-----------------h--cCC-----------C---------HHHHHHHHHHHHH--cCC
Confidence 999999999998886511 1 011 0 1123688888888 999
Q ss_pred HHHHHHHHHHHHhhc
Q 000322 1422 WNEARLAIDAALKAA 1436 (1670)
Q Consensus 1422 ~~EAfaAYDKALkan 1436 (1670)
.++|...|.++|...
T Consensus 377 ~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 377 PEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999999765
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.15 E-value=5.1e-09 Score=133.84 Aligned_cols=318 Identities=14% Similarity=0.049 Sum_probs=213.1
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-HHHHH
Q 000322 1012 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-LWLMY 1090 (1670)
Q Consensus 1012 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-LwlmY 1090 (1670)
..-+-+|..+.++ |+|+.|+.+|.++|+.+|+++++++.++.+|...++.+++.+.++++++.+|.+.. +.+.|
T Consensus 103 ~~llalA~ly~~~-----gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~lay 177 (822)
T PRK14574 103 RGLASAARAYRNE-----KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSY 177 (822)
T ss_pred HHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHH
Confidence 3333334455554 55799999999999999999999999999999999999999999999999999877 55666
Q ss_pred HhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc------------
Q 000322 1091 INSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI------------ 1158 (1670)
Q Consensus 1091 Insr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq------------ 1158 (1670)
+..+ . ..+.+|+..|+++.+.+ |+. .++++.++..+...|-...|++-+..--.
T Consensus 178 L~~~--~----~~~~~AL~~~ekll~~~-P~n-------~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~ 243 (822)
T PRK14574 178 LNRA--T----DRNYDALQASSEAVRLA-PTS-------EEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLER 243 (822)
T ss_pred HHHh--c----chHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHH
Confidence 6633 1 14556999999999999 676 89999999999999999888874432110
Q ss_pred --------cc---cCCCCcc----cchHHHHHHhhc---cCCcchh-h----------HHHH--H---HHHhhcc-----
Q 000322 1159 --------PA---TGSNDRH----SLFLSDILTCLT---ISDKLIF-W----------VCCV--Y---LVIYRKL----- 1199 (1670)
Q Consensus 1159 --------~A---l~g~sE~----~lSLsKi~~YLt---~sDR~~A-W----------L~~i--Y---llrYrvL----- 1199 (1670)
++ .....|+ +-.|+.+..++. ....... | |..- | .-+|..|
T Consensus 244 ~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~ 323 (822)
T PRK14574 244 DAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGY 323 (822)
T ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC
Confidence 00 0001111 114445555454 1111001 1 1110 1 2223222
Q ss_pred ---------chHHHhhhhhhhhhhccCCCCcccchhhH------HHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhH
Q 000322 1200 ---------PDAVLQLLECEKELFAIDWPPVQLEDDEK------QRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFA 1264 (1670)
Q Consensus 1200 ---------PGn~y~q~e~~KEAf~I~W~y~~vlkdEP------dnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fK 1264 (1670)
-++-|+-.+.+.+|..| |..++..+| ........+.+.|.++ ++-+.+...-.++....|
T Consensus 324 ~~P~y~~~a~adayl~~~~P~kA~~l---~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~--e~~~~A~~~l~~~~~~~p 398 (822)
T PRK14574 324 KMPDYARRWAASAYIDRRLPEKAAPI---LSSLYYSDGKTFRNSDDLLDADDLYYSLNES--EQLDKAYQFAVNYSEQTP 398 (822)
T ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHH---HHHHhhccccccCCCcchHHHHHHHHHHHhc--ccHHHHHHHHHHHHhcCC
Confidence 24668888889999999 888877653 2232223333333331 221222222111111122
Q ss_pred ---------------------HHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhcc-cCCccHHHHHHHHH
Q 000322 1265 ---------------------VNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHD-FGDLSSVGFEEALI 1322 (1670)
Q Consensus 1265 ---------------------LN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~-m~~~A~svle~AL~ 1322 (1670)
...++.++-.++..+|.+++++++..-|.+..|++..+-+.... -|.+|...++.++.
T Consensus 399 ~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~ 478 (822)
T PRK14574 399 YQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES 478 (822)
T ss_pred cEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 01133334477999999999999999999999955555554444 49999999999999
Q ss_pred hCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000322 1323 KWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1357 (1670)
Q Consensus 1323 ~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ 1357 (1670)
++|++.. +..+++..++..++|.+|..++..
T Consensus 479 l~P~~~~----~~~~~~~~al~l~e~~~A~~~~~~ 509 (822)
T PRK14574 479 LAPRSLI----LERAQAETAMALQEWHQMELLTDD 509 (822)
T ss_pred hCCccHH----HHHHHHHHHHhhhhHHHHHHHHHH
Confidence 9999999 888899999999999999988855
No 28
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.14 E-value=2.7e-08 Score=118.08 Aligned_cols=460 Identities=15% Similarity=0.121 Sum_probs=283.0
Q ss_pred ccccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHH
Q 000322 1007 VELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYAL 1086 (1670)
Q Consensus 1007 ~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~L 1086 (1670)
......+||++|.--+.-+. ..-|.+++.||+.+-|----+||.|..+.-..++-.++.+.|++=.+..| ...-
T Consensus 103 d~r~itLWlkYae~Emknk~-----vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P-~eqa 176 (677)
T KOG1915|consen 103 DYRNITLWLKYAEFEMKNKQ-----VNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEP-DEQA 176 (677)
T ss_pred ccccchHHHHHHHHHHhhhh-----HhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCC-cHHH
Confidence 34445899999987665543 47899999999999999999999999999899999999999999999997 5679
Q ss_pred HHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCC-
Q 000322 1087 WLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND- 1165 (1670)
Q Consensus 1087 wlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~s- 1165 (1670)
|+.||+.+.+.- ..++|+++|++-+-.+ |+ ..-|+--+.+...-|++..|.+++.+--. .-|..
T Consensus 177 W~sfI~fElRyk----eieraR~IYerfV~~H-P~--------v~~wikyarFE~k~g~~~~aR~VyerAie--~~~~d~ 241 (677)
T KOG1915|consen 177 WLSFIKFELRYK----EIERARSIYERFVLVH-PK--------VSNWIKYARFEEKHGNVALARSVYERAIE--FLGDDE 241 (677)
T ss_pred HHHHHHHHHHhh----HHHHHHHHHHHHheec-cc--------HHHHHHHHHHHHhcCcHHHHHHHHHHHHH--HhhhHH
Confidence 999999884443 5699999999999998 67 67889999999999999999887755432 11211
Q ss_pred cccchHHHHHHhhccC-CcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhh
Q 000322 1166 RHSLFLSDILTCLTIS-DKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVEL 1244 (1670)
Q Consensus 1166 E~~lSLsKi~~YLt~s-DR~~AWL~~iYllrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~~ 1244 (1670)
+..+..-.|..+.... .-.-|-..+.| ....+| .|+..++|.- + +..=.+
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iyky--Ald~~p------k~raeeL~k~---------------~------~~fEKq 292 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKY--ALDHIP------KGRAEELYKK---------------Y------TAFEKQ 292 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcC------cccHHHHHHH---------------H------HHHHHH
Confidence 1011222222222110 00001111111 112222 2222222221 1 111112
Q ss_pred hcCCcchhhhh-------hhchhhHhHHHH------HHHHHHhcCHHHHHHHHHHHHHhCCCchh---------HHHHHH
Q 000322 1245 YSNGESLEKET-------NLRSAHCFAVNH------IWCMAVLNGLECSMNLLEKYIKLYPSCLE---------LVLMKA 1302 (1670)
Q Consensus 1245 ~~ndesla~~~-------~~kt~~~fKLN~------IR~lI~LEDse~A~~LfdklLk~~P~d~e---------L~L~AA 1302 (1670)
|...+...... +++....-|.|+ ++..-..++.+.+++.|.+++...|.-.+ ||+-.+
T Consensus 293 fGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYa 372 (677)
T KOG1915|consen 293 FGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYA 372 (677)
T ss_pred hcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHH
Confidence 11112222211 233333344443 44433366999999999999998887544 333332
Q ss_pred -H--HhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccc--c------ccc
Q 000322 1303 -R--LQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQY--S------QVE 1371 (1670)
Q Consensus 1303 -y--L~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~--~------~de 1371 (1670)
| |..++ .+.++.||+..|.+-|...=--..+|+.|+++.+++.+.+.|.+++-....-+++.-. . +=.
T Consensus 373 lyeEle~ed-~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~ 451 (677)
T KOG1915|consen 373 LYEELEAED-VERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLR 451 (677)
T ss_pred HHHHHHhhh-HHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHh
Confidence 2 34454 7788899999999999988888889999999999999999999998663333332221 0 000
Q ss_pred chhhhccc-CCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHH
Q 000322 1372 ISDPLVAD-MSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAM 1450 (1670)
Q Consensus 1372 ALDaLrkg-ns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAY 1450 (1670)
-.|-+++. -.- ++ + +|.++- +.++-+-..-..|+.+.|.+.|+=|++-.....-+..|.-|.-
T Consensus 452 efDRcRkLYEkf--le---------~-~Pe~c~----~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYId 515 (677)
T KOG1915|consen 452 EFDRCRKLYEKF--LE---------F-SPENCY----AWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYID 515 (677)
T ss_pred hHHHHHHHHHHH--Hh---------c-ChHhhH----HHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhh
Confidence 11112211 000 00 0 111221 5666666666677778888888888777666666777777777
Q ss_pred HHhcCCCCCCcccchhhhHHHHHHHHhh-----hcccccccc-----------cchhhhccccchhhHHHHhhhcCC--C
Q 000322 1451 LLLINESEPKEGAPISWQLKLLNSYLDR-----ARSLPYLKL-----------LPRQFINNIERPRLQQLIDNLLSP--V 1512 (1670)
Q Consensus 1451 FLS~e~~dL~KAeqMS~~~KtVsTYLDT-----AWILf~~~~-----------lARiYI~~i~k~rv~~liDqaL~~--~ 1512 (1670)
|=-.++. ..||- ++-..|||+ .||-|.+-. ++..=|+.--.-|-|+..|.|+.. .
T Consensus 516 FEi~~~E-~ekaR------~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~ 588 (677)
T KOG1915|consen 516 FEIEEGE-FEKAR------ALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKE 588 (677)
T ss_pred hhhhcch-HHHHH------HHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHh
Confidence 7544332 22211 223788997 399886433 334444433445667788888766 2
Q ss_pred CCChhhHHHHHhhc------cC--------CCCccccccccc
Q 000322 1513 SSDFSLVNLVLEVC------YG--------PSLLPRNFSKLK 1540 (1670)
Q Consensus 1513 S~dss~~nkALE~W------~g--------~slLpqKI~~kK 1540 (1670)
+.+-...=..||.| +| .+.+|+||++++
T Consensus 589 ~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk~vKKrr 630 (677)
T KOG1915|consen 589 STPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPKKVKKRR 630 (677)
T ss_pred cCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccHHHHhhh
Confidence 22222333478889 33 344777776655
No 29
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.09 E-value=8.4e-10 Score=122.56 Aligned_cols=153 Identities=20% Similarity=0.152 Sum_probs=105.5
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHhhcc-cCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHH
Q 000322 1268 IWCMAVLNGLECSMNLLEKYIKLY--PSCLELVLMKARLQKHD-FGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQ 1344 (1670)
Q Consensus 1268 IR~lI~LEDse~A~~LfdklLk~~--P~d~eL~L~AAyL~~K~-m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~ 1344 (1670)
+..+...++.+.+..++.++.+.. |.+..+++..+.+..+. .+++|+..|++||...|+|.. ++..|+-..+.
T Consensus 117 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~----~~~~l~~~li~ 192 (280)
T PF13429_consen 117 LQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD----ARNALAWLLID 192 (280)
T ss_dssp -H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH----HHHHHHHHHCT
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHH
Confidence 444455678899999999988766 77888866555554443 488999999999999999999 99999999999
Q ss_pred cCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHH
Q 000322 1345 NGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNE 1424 (1670)
Q Consensus 1345 ~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~E 1424 (1670)
.|+.++++++++.|-... +. .++++ ..++.++.. .|+.++
T Consensus 193 ~~~~~~~~~~l~~~~~~~-------------------~~--------~~~~~-----------~~la~~~~~--lg~~~~ 232 (280)
T PF13429_consen 193 MGDYDEAREALKRLLKAA-------------------PD--------DPDLW-----------DALAAAYLQ--LGRYEE 232 (280)
T ss_dssp TCHHHHHHHHHHHHHHH--------------------HT--------SCCHC-----------HHHHHHHHH--HT-HHH
T ss_pred CCChHHHHHHHHHHHHHC-------------------cC--------HHHHH-----------HHHHHHhcc--cccccc
Confidence 999999999997754433 01 12333 667888888 899999
Q ss_pred HHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhh
Q 000322 1425 ARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISW 1467 (1670)
Q Consensus 1425 AfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~ 1467 (1670)
|..+|+++++.+|++ ...+..||..|...|. .++|.++-.
T Consensus 233 Al~~~~~~~~~~p~d--~~~~~~~a~~l~~~g~-~~~A~~~~~ 272 (280)
T PF13429_consen 233 ALEYLEKALKLNPDD--PLWLLAYADALEQAGR-KDEALRLRR 272 (280)
T ss_dssp HHHHHHHHHHHSTT---HHHHHHHHHHHT--------------
T ss_pred ccccccccccccccc--cccccccccccccccc-ccccccccc
Confidence 999999999999999 8999999999988774 666666443
No 30
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.07 E-value=1.2e-09 Score=131.87 Aligned_cols=322 Identities=13% Similarity=0.057 Sum_probs=225.4
Q ss_pred hhhhccccHHHHHHHHHHHhcccc-----------------------------cchhhHHHHHHHHHHHHHhCCCCHHHH
Q 000322 1003 KLKQVELSNEQCVEMALLILNQDA-----------------------------NKLEGMKKALSLLSRALEADPTSEILW 1053 (1670)
Q Consensus 1003 ~le~~~~d~qlWLelAl~~Lnq~~-----------------------------n~~g~ydAALdLLsrALEINPtSaeaW 1053 (1670)
-||-+|.-++.||-+|--+..+.. ...|++..|..-|.+|+++.|.=+.+|
T Consensus 142 aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiaw 221 (966)
T KOG4626|consen 142 AIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAW 221 (966)
T ss_pred HHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeee
Confidence 455567777999998865555542 135667778888999999999999999
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhh
Q 000322 1054 ITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASAC 1128 (1670)
Q Consensus 1054 y~yl~lY~~~~~~eea~emlekAVelnP~NY~-----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~ 1128 (1670)
..|+..|...|+-.++...|++||+++| ||. |+..|-..+ .|++|+..|+++..-. |.-
T Consensus 222 snLg~~f~~~Gei~~aiq~y~eAvkldP-~f~dAYiNLGnV~ke~~--------~~d~Avs~Y~rAl~lr-pn~------ 285 (966)
T KOG4626|consen 222 SNLGCVFNAQGEIWLAIQHYEEAVKLDP-NFLDAYINLGNVYKEAR--------IFDRAVSCYLRALNLR-PNH------ 285 (966)
T ss_pred hhcchHHhhcchHHHHHHHHHHhhcCCC-cchHHHhhHHHHHHHHh--------cchHHHHHHHHHHhcC-Ccc------
Confidence 9999999999999999999999999997 443 777777777 7899999998876654 332
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchh-----------hHHHHH-HHHh
Q 000322 1129 ILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIF-----------WVCCVY-LVIY 1196 (1670)
Q Consensus 1129 iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~A-----------WL~~iY-llrY 1196 (1670)
-.+.--|.-.|-.+|.+|-||.++.|-.. ..|+ .--+.=-+--..+|+.-. .||-.| +.-|
T Consensus 286 -A~a~gNla~iYyeqG~ldlAI~~Ykral~-----~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~ 358 (966)
T KOG4626|consen 286 -AVAHGNLACIYYEQGLLDLAIDTYKRALE-----LQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMN 358 (966)
T ss_pred -hhhccceEEEEeccccHHHHHHHHHHHHh-----cCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHH
Confidence 33444455678899999999999988775 3331 111111111112222222 333344 3222
Q ss_pred hccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhh---hchhhHhHH---HHHHH
Q 000322 1197 RKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETN---LRSAHCFAV---NHIWC 1270 (1670)
Q Consensus 1197 rvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ndesla~~~~---~kt~~~fKL---N~IR~ 1270 (1670)
=+|++|+--++-.+|..+ |...+...|+-+.+...+| ..|.+ -|+-+.+..-+ .++..-|+- |+.--
T Consensus 359 --NLgni~~E~~~~e~A~~l---y~~al~v~p~~aaa~nNLa-~i~kq-qgnl~~Ai~~YkealrI~P~fAda~~NmGnt 431 (966)
T KOG4626|consen 359 --NLGNIYREQGKIEEATRL---YLKALEVFPEFAAAHNNLA-SIYKQ-QGNLDDAIMCYKEALRIKPTFADALSNMGNT 431 (966)
T ss_pred --HHHHHHHHhccchHHHHH---HHHHHhhChhhhhhhhhHH-HHHHh-cccHHHHHHHHHHHHhcCchHHHHHHhcchH
Confidence 268999999999999999 9999999999999999996 66665 22222111112 222233332 43333
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCCh
Q 000322 1271 MAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRH 1348 (1670)
Q Consensus 1271 lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~ 1348 (1670)
|-..+|.+.|+..+.+++...|+=++- -|.+.|=... ...+|+..|++||.+.||-+. .-|-..-.+++.-...|+
T Consensus 432 ~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsG-ni~~AI~sY~~aLklkPDfpd-A~cNllh~lq~vcdw~D~ 509 (966)
T KOG4626|consen 432 YKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSG-NIPEAIQSYRTALKLKPDFPD-AYCNLLHCLQIVCDWTDY 509 (966)
T ss_pred HHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccC-CcHHHHHHHHHHHccCCCCch-hhhHHHHHHHHHhcccch
Confidence 444669999999999999999999999 7777774444 377999999999999999888 344445566666677777
Q ss_pred HHHHHHHH
Q 000322 1349 DFAAELMD 1356 (1670)
Q Consensus 1349 d~Ai~Lc~ 1356 (1670)
|+-.+-+.
T Consensus 510 d~~~~kl~ 517 (966)
T KOG4626|consen 510 DKRMKKLV 517 (966)
T ss_pred HHHHHHHH
Confidence 76554443
No 31
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.02 E-value=1.9e-08 Score=126.70 Aligned_cols=358 Identities=15% Similarity=0.119 Sum_probs=239.1
Q ss_pred hhhhhhccccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 000322 1001 LNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS-EILWITYLLIFYSNTNSVGKDDMFSYSVKH 1079 (1670)
Q Consensus 1001 i~~le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtS-aeaWy~yl~lY~~~~~~eea~emlekAVel 1079 (1670)
.+=|.++|-.+-..|=-|...+|- ++|-.|+.+|..+|.++|.. +.+-+-.++.|-+++..+.+.-.|++|.++
T Consensus 154 ~~Vl~~sp~Nil~LlGkA~i~ynk-----kdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqL 228 (1018)
T KOG2002|consen 154 HFVLKQSPDNILALLGKARIAYNK-----KDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQL 228 (1018)
T ss_pred HHHHhhCCcchHHHHHHHHHHhcc-----ccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhc
Confidence 345677777777777777776665 56899999999999999984 445455556777778888999999999999
Q ss_pred CCCCHH--HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Q 000322 1080 NEGSYA--LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1157 (1670)
Q Consensus 1080 nP~NY~--LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLE 1157 (1670)
+|.+-. +++-++... +.+ ...|.+|++.+-+.+.-+ +.. -+++..|..-|.+.|+|..+++.-...+
T Consensus 229 dp~~v~alv~L~~~~l~--~~d-~~s~~~~~~ll~~ay~~n-~~n-------P~~l~~LAn~fyfK~dy~~v~~la~~ai 297 (1018)
T KOG2002|consen 229 DPTCVSALVALGEVDLN--FND-SDSYKKGVQLLQRAYKEN-NEN-------PVALNHLANHFYFKKDYERVWHLAEHAI 297 (1018)
T ss_pred ChhhHHHHHHHHHHHHH--ccc-hHHHHHHHHHHHHHHhhc-CCC-------cHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 997776 445444444 122 248999999999999888 455 7999999999999999999999332222
Q ss_pred ccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHH-HHHHHH
Q 000322 1158 IPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQR-AIKLIE 1236 (1670)
Q Consensus 1158 q~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdn-alAL~s 1236 (1670)
..+ .+.. +++ ....|+... |...|...+||.. |.+.++.+|++ ++.++.
T Consensus 298 ~~t---~~~~-----------~~a-es~Y~~gRs------------~Ha~Gd~ekA~~y---Y~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 298 KNT---ENKS-----------IKA-ESFYQLGRS------------YHAQGDFEKAFKY---YMESLKADNDNFVLPLVG 347 (1018)
T ss_pred Hhh---hhhH-----------HHH-HHHHHHHHH------------HHhhccHHHHHHH---HHHHHccCCCCccccccc
Confidence 211 0110 011 111244333 3444555556666 55555555555 333332
Q ss_pred HHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhh-c-cc-CC
Q 000322 1237 MAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQK-H-DF-GD 1311 (1670)
Q Consensus 1237 mA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~-K-~m-~~ 1311 (1670)
+ .+-+|..++.+++.-.|+++++.+|.+.+. .|-..|... + .+ -+
T Consensus 348 l------------------------------gQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d 397 (1018)
T KOG2002|consen 348 L------------------------------GQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRD 397 (1018)
T ss_pred h------------------------------hHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHH
Confidence 2 344466779999999999999999999998 444444433 2 12 56
Q ss_pred ccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCC
Q 000322 1312 LSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTS 1391 (1670)
Q Consensus 1312 ~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~ 1391 (1670)
.|+.++.+++...|.+.. +|..+.++.... |.-...... ..|+|.|.....++++
T Consensus 398 ~a~~~l~K~~~~~~~d~~----a~l~laql~e~~-d~~~sL~~~--------------~~A~d~L~~~~~~ip~------ 452 (1018)
T KOG2002|consen 398 KASNVLGKVLEQTPVDSE----AWLELAQLLEQT-DPWASLDAY--------------GNALDILESKGKQIPP------ 452 (1018)
T ss_pred HHHHHHHHHHhcccccHH----HHHHHHHHHHhc-ChHHHHHHH--------------HHHHHHHHHcCCCCCH------
Confidence 889999999999999999 998888766544 555444444 3577777766666643
Q ss_pred CcccccccccchhhHHHHHHH-HHHHhhhcCHHHHHHHHHHHHhh-----ccCCc-HHHHHHHHHHHHhcCC-CCCCccc
Q 000322 1392 DPEFSVSNRNQMDVMFGYLNL-SLHRLLQNDWNEARLAIDAALKA-----AASEH-FKHCVREHAMLLLINE-SEPKEGA 1463 (1670)
Q Consensus 1392 vSDfy~~~~~q~d~~fa~LGD-~L~q~Lqg~~~EAfaAYDKALka-----np~N~-~i~cLNNYAYFLS~e~-~dL~KAe 1463 (1670)
-+|+. +-.++..|++.+|..-|++||+- |++++ -+.+=..|-.=.+++. .+-..|+
T Consensus 453 ----------------E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~ 516 (1018)
T KOG2002|consen 453 ----------------EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAE 516 (1018)
T ss_pred ----------------HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHH
Confidence 33444 44445789999999999999966 44442 1122233433333333 3555666
Q ss_pred chhhhHHHH----HHHHhh
Q 000322 1464 PISWQLKLL----NSYLDR 1478 (1670)
Q Consensus 1464 qMS~~~KtV----sTYLDT 1478 (1670)
+| +|-| ++|+|-
T Consensus 517 e~---Yk~Ilkehp~YId~ 532 (1018)
T KOG2002|consen 517 EM---YKSILKEHPGYIDA 532 (1018)
T ss_pred HH---HHHHHHHCchhHHH
Confidence 64 3444 888885
No 32
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.02 E-value=6.7e-08 Score=120.95 Aligned_cols=387 Identities=10% Similarity=-0.021 Sum_probs=246.6
Q ss_pred HHHHHHHHHhcccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhCCCCchHHHHHHHHHh--hCCCCHH---
Q 000322 1013 QCVEMALLILNQDANKLEGMKKALSLLSRALEAD--PTSEILWITYLLIFYSNTNSVGKDDMFSYSVK--HNEGSYA--- 1085 (1670)
Q Consensus 1013 lWLelAl~~Lnq~~n~~g~ydAALdLLsrALEIN--PtSaeaWy~yl~lY~~~~~~eea~emlekAVe--lnP~NY~--- 1085 (1670)
.|-.+...+... |+++.|+.+|....+.. +-++..|-.++..+.+.+....+.+.+..+++ +.|+.+.
T Consensus 89 ~~~~~i~~l~~~-----g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 89 SLCSQIEKLVAC-----GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred eHHHHHHHHHcC-----CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 455555555443 45799999999988754 34778899999999888887778888888775 4555444
Q ss_pred HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCC
Q 000322 1086 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND 1165 (1670)
Q Consensus 1086 LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~s 1165 (1670)
|..+|.+.+ .+++|+.+|.+|.. ++ .-.|..|+..|+..|++++|+..+.++.. .|..
T Consensus 164 Li~~y~k~g--------~~~~A~~lf~~m~~---~~--------~~t~n~li~~~~~~g~~~~A~~lf~~M~~---~g~~ 221 (697)
T PLN03081 164 VLLMHVKCG--------MLIDARRLFDEMPE---RN--------LASWGTIIGGLVDAGNYREAFALFREMWE---DGSD 221 (697)
T ss_pred HHHHHhcCC--------CHHHHHHHHhcCCC---CC--------eeeHHHHHHHHHHCcCHHHHHHHHHHHHH---hCCC
Confidence 778898888 78999999999864 34 45789999999999999999999998874 3333
Q ss_pred cccchHH-HHHHhhccCCcchhhHHHHHHHHhh--------ccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHH
Q 000322 1166 RHSLFLS-DILTCLTISDKLIFWVCCVYLVIYR--------KLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIE 1236 (1670)
Q Consensus 1166 E~~lSLs-Ki~~YLt~sDR~~AWL~~iYllrYr--------vLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~s 1236 (1670)
+...+.. -+..|...++-..+.-...+.++.. ..+-+.|...|...+|..+ +....+. ++...-.
T Consensus 222 p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~v---f~~m~~~---~~vt~n~ 295 (697)
T PLN03081 222 AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCV---FDGMPEK---TTVAWNS 295 (697)
T ss_pred CChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHH---HHhCCCC---ChhHHHH
Confidence 3223333 3345555554433322222222222 2245677778888888776 5444322 3333334
Q ss_pred HHHHHHhhhcCCcchhhhh-------hhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCchhH--HHHHHHHhh
Q 000322 1237 MAVNSVELYSNGESLEKET-------NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLY-PSCLEL--VLMKARLQK 1306 (1670)
Q Consensus 1237 mA~dYY~~~~ndesla~~~-------~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~-P~d~eL--~L~AAyL~~ 1306 (1670)
| +..|.. .|+-+.+... +.+.+..|=..+|+.+..+++.+.|..++..+++.. +.++.+ .|...|...
T Consensus 296 l-i~~y~~-~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~ 373 (697)
T PLN03081 296 M-LAGYAL-HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW 373 (697)
T ss_pred H-HHHHHh-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHC
Confidence 4 344443 3433333332 122233343355666666889999999999999986 555555 788888665
Q ss_pred cccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHH-----------H----hhhhccccccc
Q 000322 1307 HDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWF-----------H----SVWKVQYSQVE 1371 (1670)
Q Consensus 1307 K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff-----------~----gia~~Q~~~de 1371 (1670)
.. .++|..+|+++.. | |.. .|+-+|....+.|+.++|+++.++.. . ++++.+ ..++
T Consensus 374 G~-~~~A~~vf~~m~~--~-d~~----t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g-~~~~ 444 (697)
T PLN03081 374 GR-MEDARNVFDRMPR--K-NLI----SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG-LSEQ 444 (697)
T ss_pred CC-HHHHHHHHHhCCC--C-Cee----eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC-cHHH
Confidence 44 8899999998754 3 555 79999999999999999999999822 1 111111 4555
Q ss_pred chhhhcccCC--CCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHH
Q 000322 1372 ISDPLVADMS--HSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHA 1449 (1670)
Q Consensus 1372 ALDaLrkgns--~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYA 1449 (1670)
|...|+.-.. .+.+ ....| ..|-++|.+ .|+++||+..|+++ ...|+- .+|+--+
T Consensus 445 a~~~f~~m~~~~g~~p------~~~~y-----------~~li~~l~r--~G~~~eA~~~~~~~-~~~p~~---~~~~~Ll 501 (697)
T PLN03081 445 GWEIFQSMSENHRIKP------RAMHY-----------ACMIELLGR--EGLLDEAYAMIRRA-PFKPTV---NMWAALL 501 (697)
T ss_pred HHHHHHHHHHhcCCCC------Cccch-----------HhHHHHHHh--cCCHHHHHHHHHHC-CCCCCH---HHHHHHH
Confidence 6666553211 1111 11234 778888888 88888888888775 233432 3344333
Q ss_pred HHHhcCCCCCCcccchhh
Q 000322 1450 MLLLINESEPKEGAPISW 1467 (1670)
Q Consensus 1450 YFLS~e~~dL~KAeqMS~ 1467 (1670)
--.. ...+++.|+.+..
T Consensus 502 ~a~~-~~g~~~~a~~~~~ 518 (697)
T PLN03081 502 TACR-IHKNLELGRLAAE 518 (697)
T ss_pred HHHH-HcCCcHHHHHHHH
Confidence 2222 2334555555443
No 33
>PRK12370 invasion protein regulator; Provisional
Probab=99.01 E-value=2e-08 Score=123.12 Aligned_cols=220 Identities=14% Similarity=0.061 Sum_probs=150.6
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC---------CCchHHHHHHHHHhhCCCCHH----HHHHHHhcC
Q 000322 1028 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNT---------NSVGKDDMFSYSVKHNEGSYA----LWLMYINSR 1094 (1670)
Q Consensus 1028 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~---------~~eea~emlekAVelnP~NY~----LwlmYInsr 1094 (1670)
..+.++.|+.+|.+|++++|+.+.+|..++.+|.... ...++.+.+++|++++|++.. ++.+|...+
T Consensus 273 ~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 273 TPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS 352 (553)
T ss_pred CHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence 4577899999999999999999999999988765332 135689999999999999988 555667777
Q ss_pred CCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHH
Q 000322 1095 TPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDI 1174 (1670)
Q Consensus 1095 ~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi 1174 (1670)
.|++|+..|+++.+.+ |+. .+.++.+..+|.+.|++++|+..+.+... .+|.
T Consensus 353 --------~~~~A~~~~~~Al~l~-P~~-------~~a~~~lg~~l~~~G~~~eAi~~~~~Al~-----l~P~------- 404 (553)
T PRK12370 353 --------EYIVGSLLFKQANLLS-PIS-------ADIKYYYGWNLFMAGQLEEALQTINECLK-----LDPT------- 404 (553)
T ss_pred --------CHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----cCCC-------
Confidence 7899999999999998 565 78899999999999999999998888775 3331
Q ss_pred HHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchh-hHHHHHHHHHHHHHHHhhhcCCcchhh
Q 000322 1175 LTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDD-EKQRAIKLIEMAVNSVELYSNGESLEK 1253 (1670)
Q Consensus 1175 ~~YLt~sDR~~AWL~~iYllrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkd-EPdnalAL~smA~dYY~~~~ndesla~ 1253 (1670)
+. .+. .+. +..+...|...||... +.++++. +|+.+.++.
T Consensus 405 -------~~--~~~--~~~-------~~~~~~~g~~eeA~~~---~~~~l~~~~p~~~~~~~------------------ 445 (553)
T PRK12370 405 -------RA--AAG--ITK-------LWITYYHTGIDDAIRL---GDELRSQHLQDNPILLS------------------ 445 (553)
T ss_pred -------Ch--hhH--HHH-------HHHHHhccCHHHHHHH---HHHHHHhccccCHHHHH------------------
Confidence 11 000 000 0011112334444443 2222222 122222221
Q ss_pred hhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHH---hCCCCC
Q 000322 1254 ETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALI---KWPKGV 1328 (1670)
Q Consensus 1254 ~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~---~~PkNa 1328 (1670)
++..++..+++.++|+..+.+++...|.+... .|+..|+...+ ++...++.++. ..|.++
T Consensus 446 ------------~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~a~~~l~~ll~~~~~~~~~~ 510 (553)
T PRK12370 446 ------------MQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE---RALPTIREFLESEQRIDNNP 510 (553)
T ss_pred ------------HHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH---HHHHHHHHHHHHhhHhhcCc
Confidence 22333345789999999999999999988877 55566665554 66655555444 555555
Q ss_pred c
Q 000322 1329 P 1329 (1670)
Q Consensus 1329 ~ 1329 (1670)
.
T Consensus 511 ~ 511 (553)
T PRK12370 511 G 511 (553)
T ss_pred h
Confidence 5
No 34
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.00 E-value=1.6e-08 Score=119.28 Aligned_cols=299 Identities=9% Similarity=-0.077 Sum_probs=191.7
Q ss_pred hccccHHHHHHH-----HHHHhcccc--cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHh
Q 000322 1006 QVELSNEQCVEM-----ALLILNQDA--NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVK 1078 (1670)
Q Consensus 1006 ~~~~d~qlWLel-----Al~~Lnq~~--n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVe 1078 (1670)
..|.-...|... |...+.+.. ...|++..|...+.++.+..|+....+...+.++.++++.+.++++|++|.+
T Consensus 67 ~~p~~~~~~~~~r~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~ 146 (409)
T TIGR00540 67 RLGAHSRGWFSGRKRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAE 146 (409)
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444444433 344444433 3468899999999999999999888888889999999999999999999999
Q ss_pred hCCCCHH-----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHH
Q 000322 1079 HNEGSYA-----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRI 1153 (1670)
Q Consensus 1079 lnP~NY~-----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti 1153 (1670)
..|++.. .+.+++..+ .|+.|+..++++.+.. |+. .+++..+..+|.++|+++.|+..+
T Consensus 147 ~~p~~~l~~~~~~a~l~l~~~--------~~~~Al~~l~~l~~~~-P~~-------~~~l~ll~~~~~~~~d~~~a~~~l 210 (409)
T TIGR00540 147 LAGNDNILVEIARTRILLAQN--------ELHAARHGVDKLLEMA-PRH-------KEVLKLAEEAYIRSGAWQALDDII 210 (409)
T ss_pred hCCcCchHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9998852 477888888 8999999999999998 554 799999999999999999999988
Q ss_pred HhhcccccCCCCcccchHHHHHHh---hccCCc--chh-----hHHH--HH--HHHhhccchHHHhhhhhhhhhhccCCC
Q 000322 1154 SRLLIPATGSNDRHSLFLSDILTC---LTISDK--LIF-----WVCC--VY--LVIYRKLPDAVLQLLECEKELFAIDWP 1219 (1670)
Q Consensus 1154 ~rLEq~Al~g~sE~~lSLsKi~~Y---Lt~sDR--~~A-----WL~~--iY--llrYrvLPGn~y~q~e~~KEAf~I~W~ 1219 (1670)
.++...... ++....-.....+ +...+. ... |-.. .+ ........+..+...|...+|+.+
T Consensus 211 ~~l~k~~~~--~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~--- 285 (409)
T TIGR00540 211 DNMAKAGLF--DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEI--- 285 (409)
T ss_pred HHHHHcCCC--CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHH---
Confidence 888862211 1111110011111 100000 000 1000 00 112222222333333333333332
Q ss_pred CcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHH--hcCHHHHHHHHHHHHHhCCCch--
Q 000322 1220 PVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAV--LNGLECSMNLLEKYIKLYPSCL-- 1295 (1670)
Q Consensus 1220 y~~vlkdEPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~--LEDse~A~~LfdklLk~~P~d~-- 1295 (1670)
..+.++..|++.... +-.++.++. .++.+.++.++++.++.+|.+.
T Consensus 286 l~~~l~~~pd~~~~~------------------------------~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~ 335 (409)
T TIGR00540 286 IFDGLKKLGDDRAIS------------------------------LPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKC 335 (409)
T ss_pred HHHHHhhCCCcccch------------------------------hHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhH
Confidence 222222222221100 012444433 3477888999999999999999
Q ss_pred hHHHHHHHHhhcc-cCCccHHHHH--HHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000322 1296 ELVLMKARLQKHD-FGDLSSVGFE--EALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFH 1360 (1670)
Q Consensus 1296 eL~L~AAyL~~K~-m~~~A~svle--~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~ 1360 (1670)
.+.+...++..+. ...+|+..|+ .++...|++.. .. -|....++.|+.++|.++-++...
T Consensus 336 ~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~----~~-~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 336 CINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND----LA-MAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH----HH-HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7744444443332 2778999999 68888898876 22 568889999999999888776433
No 35
>PLN03077 Protein ECB2; Provisional
Probab=98.99 E-value=1.1e-07 Score=121.52 Aligned_cols=406 Identities=13% Similarity=0.105 Sum_probs=246.6
Q ss_pred cHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhh--CCCCHH
Q 000322 1010 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEA--DPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKH--NEGSYA 1085 (1670)
Q Consensus 1010 d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEI--NPtSaeaWy~yl~lY~~~~~~eea~emlekAVel--nP~NY~ 1085 (1670)
|...|=.+...|... |+++.|+.+|...++. .| +...|..++..+...+....+.+++..+++. .|+-+.
T Consensus 252 d~~s~n~li~~~~~~-----g~~~eAl~lf~~M~~~g~~P-d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~ 325 (857)
T PLN03077 252 DCISWNAMISGYFEN-----GECLEGLELFFTMRELSVDP-DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSV 325 (857)
T ss_pred CcchhHHHHHHHHhC-----CCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHH
Confidence 445676666666654 4569999999998775 45 4556667777778888888888898888764 344444
Q ss_pred ---HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccC
Q 000322 1086 ---LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATG 1162 (1670)
Q Consensus 1086 ---LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~ 1162 (1670)
|-.+|.+.+ .+++|+.+|++|.. ++ ...|..|+..|++.|++++|+..+.++.. .
T Consensus 326 ~n~Li~~y~k~g--------~~~~A~~vf~~m~~---~d--------~~s~n~li~~~~~~g~~~~A~~lf~~M~~---~ 383 (857)
T PLN03077 326 CNSLIQMYLSLG--------SWGEAEKVFSRMET---KD--------AVSWTAMISGYEKNGLPDKALETYALMEQ---D 383 (857)
T ss_pred HHHHHHHHHhcC--------CHHHHHHHHhhCCC---CC--------eeeHHHHHHHHHhCCCHHHHHHHHHHHHH---h
Confidence 788999998 78999999999854 34 45799999999999999999999998875 3
Q ss_pred CCCcccchHHHHH-HhhccCCcchhhHHHHHHHHhhcc--------chHHHhhhhhhhhhhccCCCCcccchhhHHHHHH
Q 000322 1163 SNDRHSLFLSDIL-TCLTISDKLIFWVCCVYLVIYRKL--------PDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIK 1233 (1670)
Q Consensus 1163 g~sE~~lSLsKi~-~YLt~sDR~~AWL~~iYllrYrvL--------PGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalA 1233 (1670)
|..|...++..+. .|-..++-..+.-...+..+.+.. +-+.|...|+..+|+.+ +....+.+. ..
T Consensus 384 g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~v---f~~m~~~d~---vs 457 (857)
T PLN03077 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV---FHNIPEKDV---IS 457 (857)
T ss_pred CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHH---HHhCCCCCe---ee
Confidence 4444344554444 555555554443333332222222 23556667777777666 444432211 11
Q ss_pred HHHHHHHHHhhhcCCcchhhhhh------hchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhH--HHHHHHH
Q 000322 1234 LIEMAVNSVELYSNGESLEKETN------LRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPS-CLEL--VLMKARL 1304 (1670)
Q Consensus 1234 L~smA~dYY~~~~ndesla~~~~------~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~-d~eL--~L~AAyL 1304 (1670)
.-.| +..|.. .+.-..+...- .+.+..+=...|..+...++.+.+.+++..+++.... +.-+ .|...|.
T Consensus 458 ~~~m-i~~~~~-~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~ 535 (857)
T PLN03077 458 WTSI-IAGLRL-NNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYV 535 (857)
T ss_pred HHHH-HHHHHH-CCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHH
Confidence 1122 111211 11111111110 0111111122233333355667777777776665432 1222 5556664
Q ss_pred hhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH---------------HHhhhhccccc
Q 000322 1305 QKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRW---------------FHSVWKVQYSQ 1369 (1670)
Q Consensus 1305 ~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~f---------------f~gia~~Q~~~ 1369 (1670)
.... .++|+.+|+.. +.+.. .|+-+|....+.|+.++|+++.++- +.++++.+ .-
T Consensus 536 k~G~-~~~A~~~f~~~----~~d~~----s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g-~v 605 (857)
T PLN03077 536 RCGR-MNYAWNQFNSH----EKDVV----SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG-MV 605 (857)
T ss_pred HcCC-HHHHHHHHHhc----CCChh----hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC-hH
Confidence 4443 67888888775 55666 8999999999999999999999871 11122111 44
Q ss_pred ccchhhhcccC--CCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHH
Q 000322 1370 VEISDPLVADM--SHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVRE 1447 (1670)
Q Consensus 1370 deALDaLrkgn--s~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNN 1447 (1670)
++|+..|..-. ..+.+ ..+. |..|.++|.+ .|+++||...|++. ...|+-.+..+|.+
T Consensus 606 ~ea~~~f~~M~~~~gi~P------~~~~-----------y~~lv~~l~r--~G~~~eA~~~~~~m-~~~pd~~~~~aLl~ 665 (857)
T PLN03077 606 TQGLEYFHSMEEKYSITP------NLKH-----------YACVVDLLGR--AGKLTEAYNFINKM-PITPDPAVWGALLN 665 (857)
T ss_pred HHHHHHHHHHHHHhCCCC------chHH-----------HHHHHHHHHh--CCCHHHHHHHHHHC-CCCCCHHHHHHHHH
Confidence 55666555321 11111 1233 4899999999 99999999999985 46676545555555
Q ss_pred HHHHHhcCCCCCCcccchhhhHHHH------HHHHhh-hcccccccc
Q 000322 1448 HAMLLLINESEPKEGAPISWQLKLL------NSYLDR-ARSLPYLKL 1487 (1670)
Q Consensus 1448 YAYFLS~e~~dL~KAeqMS~~~KtV------sTYLDT-AWILf~~~~ 1487 (1670)
|+.+ ..+++.|+.+.. +++ .+|... +|++...++
T Consensus 666 -ac~~---~~~~e~~e~~a~--~l~~l~p~~~~~y~ll~n~ya~~g~ 706 (857)
T PLN03077 666 -ACRI---HRHVELGELAAQ--HIFELDPNSVGYYILLCNLYADAGK 706 (857)
T ss_pred -HHHH---cCChHHHHHHHH--HHHhhCCCCcchHHHHHHHHHHCCC
Confidence 3322 456777776655 444 344444 777777777
No 36
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=3.9e-07 Score=109.06 Aligned_cols=276 Identities=16% Similarity=0.187 Sum_probs=195.8
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHh-------CCCC------HHHHHHHHHHHHhCCCCchHHHHHHHHHh
Q 000322 1012 EQCVEMALLILNQDANKLEGMKKALSLLSRALEA-------DPTS------EILWITYLLIFYSNTNSVGKDDMFSYSVK 1078 (1670)
Q Consensus 1012 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEI-------NPtS------aeaWy~yl~lY~~~~~~eea~emlekAVe 1078 (1670)
+.-+..|+.+|-.... +.|+.|.+.+...... |--+ ++++.+-+-++.-.++..++++.|.+||+
T Consensus 277 Da~l~~~l~~l~~~~~--e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 277 DAALAEALEALEKGLE--EGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred hhhHHHHHHHHHhhCc--hhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 4445555555554433 4566666555443321 1111 34444444444456667889999999999
Q ss_pred hCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHH
Q 000322 1079 HNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRIS 1154 (1670)
Q Consensus 1079 lnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~ 1154 (1670)
+.|.+-. ++.+|+... +=++....|-.+..-+ |.. -|+++.+.|++...++|+.|+.-
T Consensus 355 l~~~~~~lyI~~a~~y~d~~--------~~~~~~~~F~~A~~ld-p~n-------~dvYyHRgQm~flL~q~e~A~aD-- 416 (606)
T KOG0547|consen 355 LDPAFNSLYIKRAAAYADEN--------QSEKMWKDFNKAEDLD-PEN-------PDVYYHRGQMRFLLQQYEEAIAD-- 416 (606)
T ss_pred cCcccchHHHHHHHHHhhhh--------ccHHHHHHHHHHHhcC-CCC-------CchhHhHHHHHHHHHHHHHHHHH--
Confidence 9987655 778888776 4567777776555555 666 89999999999999999999871
Q ss_pred hhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHH
Q 000322 1155 RLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKL 1234 (1670)
Q Consensus 1155 rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL 1234 (1670)
+ ++....+|+++++.
T Consensus 417 --F---------------------------------------------------------------~Kai~L~pe~~~~~ 431 (606)
T KOG0547|consen 417 --F---------------------------------------------------------------QKAISLDPENAYAY 431 (606)
T ss_pred --H---------------------------------------------------------------HHHhhcChhhhHHH
Confidence 1 11123478999999
Q ss_pred HHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhhcccCCcc
Q 000322 1235 IEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLS 1313 (1670)
Q Consensus 1235 ~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~K~m~~~A 1313 (1670)
+.+++-.|++ ...+++...|....+.-|.|+++ .+.+.-|.-++.=++|
T Consensus 432 iQl~~a~Yr~------------------------------~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A 481 (606)
T KOG0547|consen 432 IQLCCALYRQ------------------------------HKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKA 481 (606)
T ss_pred HHHHHHHHHH------------------------------HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHH
Confidence 9987666663 04567888999999999999999 8998888776668899
Q ss_pred HHHHHHHHHhCCC------CCc-hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCC
Q 000322 1314 SVGFEEALIKWPK------GVP-GIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPE 1386 (1670)
Q Consensus 1314 ~svle~AL~~~Pk------Na~-g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~e 1386 (1670)
...|+.|+.++|+ |+. ++..+ ++...|. +++++|+.||++ ++. +.+
T Consensus 482 ~k~YD~ai~LE~~~~~~~v~~~plV~Ka---~l~~qwk-~d~~~a~~Ll~K-----------------A~e-----~Dp- 534 (606)
T KOG0547|consen 482 VKQYDKAIELEPREHLIIVNAAPLVHKA---LLVLQWK-EDINQAENLLRK-----------------AIE-----LDP- 534 (606)
T ss_pred HHHHHHHHhhccccccccccchhhhhhh---Hhhhchh-hhHHHHHHHHHH-----------------HHc-----cCc-
Confidence 9999999999999 665 44433 2444576 699999999976 222 111
Q ss_pred CCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHH
Q 000322 1387 STSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREH 1448 (1670)
Q Consensus 1387 s~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNY 1448 (1670)
.+| | ++.+++-....+|+.+||.+.||+++.++... ..-++=|
T Consensus 535 -----kce-------~-----A~~tlaq~~lQ~~~i~eAielFEksa~lArt~--~E~~~a~ 577 (606)
T KOG0547|consen 535 -----KCE-------Q-----AYETLAQFELQRGKIDEAIELFEKSAQLARTE--SEMVHAY 577 (606)
T ss_pred -----hHH-------H-----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH--HHHHHHH
Confidence 122 3 78787766666999999999999999999876 4444433
No 37
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.81 E-value=4.2e-08 Score=113.47 Aligned_cols=156 Identities=24% Similarity=0.285 Sum_probs=128.5
Q ss_pred hhhhccccHHHHHHHHHHHhcccc-------cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHH
Q 000322 1003 KLKQVELSNEQCVEMALLILNQDA-------NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSY 1075 (1670)
Q Consensus 1003 ~le~~~~d~qlWLelAl~~Lnq~~-------n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlek 1075 (1670)
.+...|.|+++||+++...-.-.. ....-.+..+++|.+||+.||.+..+|..|+.++.+.-..+.+.+.+++
T Consensus 11 ~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~ 90 (321)
T PF08424_consen 11 RVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEE 90 (321)
T ss_pred HHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 678889999999999954333221 2234467889999999999999999999999999999888889999999
Q ss_pred HHhhCCCCHHHHHHHHhcCC------CcccchhhHHHHHHHHHHhhhcC---CCCcchhhhhhHHHHHHHHHHHHHhcCH
Q 000322 1076 SVKHNEGSYALWLMYINSRT------PLNHRLDAYDAALSVLCRCASAS---DGDEMHASACILDLFLQMLQCFCMSGNT 1146 (1670)
Q Consensus 1076 AVelnP~NY~LwlmYInsr~------slddrl~~YdkAI~aLe~las~~---~~Dr~~~Sa~iLDILL~LvqLY~qSGny 1146 (1670)
+++.+|+++.||..||+..- ++.+-...|.+++..|....... ..+..+..-.++++++.+..+..++|-.
T Consensus 91 ~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~ 170 (321)
T PF08424_consen 91 LLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYT 170 (321)
T ss_pred HHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCch
Confidence 99999999999999999653 35567778888888886654432 1334455679999999999999999999
Q ss_pred HHHHHHHHhhcc
Q 000322 1147 EKAIQRISRLLI 1158 (1670)
Q Consensus 1147 dKAI~ti~rLEq 1158 (1670)
+.|++.+..+..
T Consensus 171 E~Ava~~Qa~lE 182 (321)
T PF08424_consen 171 ERAVALWQALLE 182 (321)
T ss_pred HHHHHHHHHHHH
Confidence 999998888876
No 38
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.81 E-value=9.8e-07 Score=90.35 Aligned_cols=130 Identities=18% Similarity=0.206 Sum_probs=104.7
Q ss_pred ccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH---
Q 000322 1009 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--- 1085 (1670)
Q Consensus 1009 ~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~--- 1085 (1670)
...+.++.+|..++.. |+++.|+..|.++++.+|+++.+|+.++.+|...+...++.++|++|+++.|.+..
T Consensus 29 ~~~~~~~~la~~~~~~-----~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 103 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQ-----GDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLN 103 (234)
T ss_pred cHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence 3457788888888776 45799999999999999999999999999999999888899999999999988765
Q ss_pred -HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCC-CCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000322 1086 -LWLMYINSRTPLNHRLDAYDAALSVLCRCASASD-GDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1086 -LwlmYInsr~slddrl~~YdkAI~aLe~las~~~-~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1158 (1670)
++.+|...+ .|++|+..|.+.....+ +.. .+++..+..+|...|++++|+..+.+...
T Consensus 104 ~~~~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (234)
T TIGR02521 104 NYGTFLCQQG--------KYEQAMQQFEQAIEDPLYPQP-------ARSLENAGLCALKAGDFDKAEKYLTRALQ 163 (234)
T ss_pred HHHHHHHHcc--------cHHHHHHHHHHHHhccccccc-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566677777 78899998888766431 122 46677788888899999999887766654
No 39
>PRK12370 invasion protein regulator; Provisional
Probab=98.76 E-value=1.2e-07 Score=116.47 Aligned_cols=192 Identities=14% Similarity=0.002 Sum_probs=145.8
Q ss_pred hhhhccccHHHHHHHHHHHhcccc----cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHh
Q 000322 1003 KLKQVELSNEQCVEMALLILNQDA----NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVK 1078 (1670)
Q Consensus 1003 ~le~~~~d~qlWLelAl~~Lnq~~----n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVe 1078 (1670)
-++..|.....|..+|.-++.... ...+.++.|...+.+|++++|+++.+|..++.++...+...++...|++|++
T Consensus 287 Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 366 (553)
T PRK12370 287 CVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANL 366 (553)
T ss_pred HHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345557777888888876553321 2456789999999999999999999999999999999999999999999999
Q ss_pred hCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHH
Q 000322 1079 HNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRIS 1154 (1670)
Q Consensus 1079 lnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~ 1154 (1670)
++|++.. ++..|...+ .|++|+..|+++.+.+ |+. ....+.++.++...|++++|+..+.
T Consensus 367 l~P~~~~a~~~lg~~l~~~G--------~~~eAi~~~~~Al~l~-P~~-------~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 367 LSPISADIKYYYGWNLFMAG--------QLEEALQTINECLKLD-PTR-------AAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred hCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHhcC-CCC-------hhhHHHHHHHHHhccCHHHHHHHHH
Confidence 9999876 666777777 7899999999999888 453 3344444555667899999999776
Q ss_pred hhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHH
Q 000322 1155 RLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKL 1234 (1670)
Q Consensus 1155 rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL 1234 (1670)
++.. .. .| .+. .+..++|.+|...|..+||... +.++...+|+...+.
T Consensus 431 ~~l~--~~--~p--------------~~~-----------~~~~~la~~l~~~G~~~eA~~~---~~~~~~~~~~~~~~~ 478 (553)
T PRK12370 431 ELRS--QH--LQ--------------DNP-----------ILLSMQVMFLSLKGKHELARKL---TKEISTQEITGLIAV 478 (553)
T ss_pred HHHH--hc--cc--------------cCH-----------HHHHHHHHHHHhCCCHHHHHHH---HHHhhhccchhHHHH
Confidence 6653 11 11 111 1223457777888999999888 788888888888888
Q ss_pred HHHHHHHHh
Q 000322 1235 IEMAVNSVE 1243 (1670)
Q Consensus 1235 ~smA~dYY~ 1243 (1670)
..++ .+|.
T Consensus 479 ~~l~-~~~~ 486 (553)
T PRK12370 479 NLLY-AEYC 486 (553)
T ss_pred HHHH-HHHh
Confidence 7774 4443
No 40
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.75 E-value=4e-06 Score=110.47 Aligned_cols=272 Identities=13% Similarity=0.066 Sum_probs=158.0
Q ss_pred hhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhCCCCchHHHHHHHHHhhC--CCCHH---HHHHHHhcCCCcccchhh
Q 000322 1030 EGMKKALSLLSRALEADPT-SEILWITYLLIFYSNTNSVGKDDMFSYSVKHN--EGSYA---LWLMYINSRTPLNHRLDA 1103 (1670)
Q Consensus 1030 g~ydAALdLLsrALEINPt-SaeaWy~yl~lY~~~~~~eea~emlekAVeln--P~NY~---LwlmYInsr~slddrl~~ 1103 (1670)
++++.|+.+|....+.... +..+|..++..|.+.+.-.++.+.|+...+.. |+... |...|.+.+ .
T Consensus 451 g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G--------~ 522 (1060)
T PLN03218 451 QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG--------Q 522 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc--------C
Confidence 5568888888888876654 57778888888888887777888888877643 32222 556677676 6
Q ss_pred HHHHHHHHHHhhhcC-CCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHH-HHHHhhccC
Q 000322 1104 YDAALSVLCRCASAS-DGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLS-DILTCLTIS 1181 (1670)
Q Consensus 1104 YdkAI~aLe~las~~-~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLs-Ki~~YLt~s 1181 (1670)
+++|+.+|.+|.+.. .|| .-++..|+..|++.|++++|.+.+..+... ..|..|...+.. -|..|...+
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD--------~vTYnsLI~a~~k~G~~deA~~lf~eM~~~-~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPD--------RVVFNALISACGQSGAVDRAFDVLAEMKAE-THPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHCC
Confidence 788888888875532 355 567888888888888888888877777531 122233112222 222344444
Q ss_pred CcchhhHHHHHHH---------HhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchh
Q 000322 1182 DKLIFWVCCVYLV---------IYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLE 1252 (1670)
Q Consensus 1182 DR~~AWL~~iYll---------rYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ndesla 1252 (1670)
+-..|+-.+.... .|..| ...|.+.|...+|+. ++... . . .
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsL-I~ay~k~G~~deAl~------------------lf~eM-~---~-~------ 643 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIA-VNSCSQKGDWDFALS------------------IYDDM-K---K-K------ 643 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHH-HHHHHhcCCHHHHHH------------------HHHHH-H---H-c------
Confidence 4332311111111 11111 112222222222222 22110 0 0 0
Q ss_pred hhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCchhH-HHHHHHHhhcccCCccHHHHHHHHHh--CCCC
Q 000322 1253 KETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLY--PSCLEL-VLMKARLQKHDFGDLSSVGFEEALIK--WPKG 1327 (1670)
Q Consensus 1253 ~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~--P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~~--~PkN 1327 (1670)
.-..+..+=..+|..+...++.+.|.++|+.+.+.. |...-. .|..+|....+ .++|+.+|+++... .|+
T Consensus 644 ---Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~-~eeA~~lf~eM~~~g~~Pd- 718 (1060)
T PLN03218 644 ---GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN-WKKALELYEDIKSIKLRPT- 718 (1060)
T ss_pred ---CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCC-
Confidence 001111111233444444678888888888888763 333333 77777765554 77888888887653 443
Q ss_pred CchHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000322 1328 VPGIQCIWNQYVEYALQNGRHDFAAELMDR 1357 (1670)
Q Consensus 1328 a~g~~caW~QLIq~al~~en~d~Ai~Lc~~ 1357 (1670)
.. .|+.||....+.|++++|.++..+
T Consensus 719 vv----tyN~LI~gy~k~G~~eeAlelf~e 744 (1060)
T PLN03218 719 VS----TMNALITALCEGNQLPKALEVLSE 744 (1060)
T ss_pred HH----HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 23 688888888888888888888876
No 41
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=98.75 E-value=2.4e-09 Score=80.60 Aligned_cols=22 Identities=55% Similarity=1.307 Sum_probs=21.0
Q ss_pred ccceecccc-cccCCCCchhhhh
Q 000322 857 PLCMYELRG-KCNNDECPWQHVK 878 (1670)
Q Consensus 857 ~lC~fel~G-~CNd~~C~wQH~~ 878 (1670)
|||+|||+| +|||++|.|||+|
T Consensus 1 ~lC~yEl~Gg~Cnd~~C~~QHfr 23 (23)
T PF10650_consen 1 PLCPYELTGGVCNDPDCEFQHFR 23 (23)
T ss_pred CCCccccCCCeeCCCCCCccccC
Confidence 699999998 9999999999996
No 42
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.71 E-value=4.7e-06 Score=104.72 Aligned_cols=338 Identities=10% Similarity=0.025 Sum_probs=187.9
Q ss_pred cHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhCCCCchHHHHHHHHHhhC--CCCHH-
Q 000322 1010 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPT-SEILWITYLLIFYSNTNSVGKDDMFSYSVKHN--EGSYA- 1085 (1670)
Q Consensus 1010 d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPt-SaeaWy~yl~lY~~~~~~eea~emlekAVeln--P~NY~- 1085 (1670)
|...|=.+...+... |+++.|+.+|...++..+. +...|..++..+...+.-..+.+.+..+++.. |+-+.
T Consensus 188 ~~~t~n~li~~~~~~-----g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~ 262 (697)
T PLN03081 188 NLASWGTIIGGLVDA-----GNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVS 262 (697)
T ss_pred CeeeHHHHHHHHHHC-----cCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeH
Confidence 344555555555544 5578889999888876553 45667777777777777666777777666543 32222
Q ss_pred --HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCC
Q 000322 1086 --LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGS 1163 (1670)
Q Consensus 1086 --LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g 1163 (1670)
|-.+|.+.+ .+++|+.+|++|... + ...|..|+..|++.|++++|+..+.++.. .|
T Consensus 263 n~Li~~y~k~g--------~~~~A~~vf~~m~~~---~--------~vt~n~li~~y~~~g~~~eA~~lf~~M~~---~g 320 (697)
T PLN03081 263 CALIDMYSKCG--------DIEDARCVFDGMPEK---T--------TVAWNSMLAGYALHGYSEEALCLYYEMRD---SG 320 (697)
T ss_pred HHHHHHHHHCC--------CHHHHHHHHHhCCCC---C--------hhHHHHHHHHHHhCCCHHHHHHHHHHHHH---cC
Confidence 778999988 789999999988543 3 56899999999999999999999888874 34
Q ss_pred CCcccchHHH-HHHhhccCCcchhhHHHHHHHHhhc--------cchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHH
Q 000322 1164 NDRHSLFLSD-ILTCLTISDKLIFWVCCVYLVIYRK--------LPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKL 1234 (1670)
Q Consensus 1164 ~sE~~lSLsK-i~~YLt~sDR~~AWL~~iYllrYrv--------LPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL 1234 (1670)
..+...+... +..|...++-..+.-...+.++... .+.+.|...|.-++|..+ +....+ | ++...
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~v---f~~m~~--~-d~~t~ 394 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNV---FDRMPR--K-NLISW 394 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHH---HHhCCC--C-CeeeH
Confidence 3332334333 4456555554444222222222211 122333334444444433 222211 1 11111
Q ss_pred HHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCchhH-HHHHHHHhhcccCC
Q 000322 1235 IEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIK--LYPSCLEL-VLMKARLQKHDFGD 1311 (1670)
Q Consensus 1235 ~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk--~~P~d~eL-~L~AAyL~~K~m~~ 1311 (1670)
- .+|..|...++.++|+++|+++++ ..|+.+.. .|..++-... ..+
T Consensus 395 n------------------------------~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g-~~~ 443 (697)
T PLN03081 395 N------------------------------ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG-LSE 443 (697)
T ss_pred H------------------------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC-cHH
Confidence 1 234444445566666666666554 23444444 4444443332 255
Q ss_pred ccHHHHHHHHHh---CCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH--------HHH---hhhhcccccccchhhhc
Q 000322 1312 LSSVGFEEALIK---WPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR--------WFH---SVWKVQYSQVEISDPLV 1377 (1670)
Q Consensus 1312 ~A~svle~AL~~---~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~--------ff~---gia~~Q~~~deALDaLr 1377 (1670)
+|..+|+.+... .|+-. .|.-+|...-+.|++++|.++.++ .|. +.+......+.|..+++
T Consensus 444 ~a~~~f~~m~~~~g~~p~~~-----~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~ 518 (697)
T PLN03081 444 QGWEIFQSMSENHRIKPRAM-----HYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAE 518 (697)
T ss_pred HHHHHHHHHHHhcCCCCCcc-----chHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 666666665543 22221 234445666666666666665544 011 11111112233333333
Q ss_pred ccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhh
Q 000322 1378 ADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKA 1435 (1670)
Q Consensus 1378 kgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALka 1435 (1670)
+.... .+. ....| .+|..+|.. .|+++||...++.....
T Consensus 519 ~l~~~-----~p~-~~~~y-----------~~L~~~y~~--~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 519 KLYGM-----GPE-KLNNY-----------VVLLNLYNS--SGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHhCC-----CCC-CCcch-----------HHHHHHHHh--CCCHHHHHHHHHHHHHc
Confidence 22111 111 12345 788889999 99999999999876643
No 43
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.70 E-value=1e-06 Score=102.32 Aligned_cols=355 Identities=13% Similarity=0.035 Sum_probs=222.2
Q ss_pred cccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH--
Q 000322 1008 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-- 1085 (1670)
Q Consensus 1008 ~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-- 1085 (1670)
+.|++--+++-...|.. ++|..||.-|-.|+|.||++=.++|.-+-.|..+|....+..-|.+-+++-|+=+.
T Consensus 35 ~advekhlElGk~lla~-----~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~AR 109 (504)
T KOG0624|consen 35 PADVEKHLELGKELLAR-----GQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAAR 109 (504)
T ss_pred HHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHH
Confidence 55666666666666554 66799999999999999999999999999999999988899999999999997665
Q ss_pred --HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCC---cchhh--hhhHHHHH--HHHHHHHHhcCHHHHHHHHHhh
Q 000322 1086 --LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD---EMHAS--ACILDLFL--QMLQCFCMSGNTEKAIQRISRL 1156 (1670)
Q Consensus 1086 --LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~D---r~~~S--a~iLDILL--~LvqLY~qSGnydKAI~ti~rL 1156 (1670)
-+.+.++++ .++.|..=+.......+.. ++..| +-|.+-+. +++.-+.-+|++..||..|+.|
T Consensus 110 iQRg~vllK~G--------ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 110 IQRGVVLLKQG--------ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred HHhchhhhhcc--------cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 556778888 8899988887666655222 11222 23444433 3344455678999999999999
Q ss_pred cccccCCCCcccchHHHHH--HhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHH
Q 000322 1157 LIPATGSNDRHSLFLSDIL--TCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKL 1234 (1670)
Q Consensus 1157 Eq~Al~g~sE~~lSLsKi~--~YLt~sDR~~AWL~~iYllrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL 1234 (1670)
+. ..+=+.+|-.++ -|+..++. ...||+++. +.+-.-|+.-.+
T Consensus 182 lE-----i~~Wda~l~~~Rakc~i~~~e~----k~AI~Dlk~--------------------------askLs~DnTe~~ 226 (504)
T KOG0624|consen 182 LE-----IQPWDASLRQARAKCYIAEGEP----KKAIHDLKQ--------------------------ASKLSQDNTEGH 226 (504)
T ss_pred Hh-----cCcchhHHHHHHHHHHHhcCcH----HHHHHHHHH--------------------------HHhccccchHHH
Confidence 86 333122222222 23333333 233444433 212222444455
Q ss_pred HHHHHHHHhhhcCCcchhhhh-------hhchhhHhHH-----------HHHHHHHHhcCHHHHHHHHHHHHHhCCCchh
Q 000322 1235 IEMAVNSVELYSNGESLEKET-------NLRSAHCFAV-----------NHIWCMAVLNGLECSMNLLEKYIKLYPSCLE 1296 (1670)
Q Consensus 1235 ~smA~dYY~~~~ndesla~~~-------~~kt~~~fKL-----------N~IR~lI~LEDse~A~~LfdklLk~~P~d~e 1296 (1670)
++++-=+|. +|+-+.+-.. ++.--.|||- .-+.+.|...+++.|++-..++|+..|+.+.
T Consensus 227 ykis~L~Y~--vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ 304 (504)
T KOG0624|consen 227 YKISQLLYT--VGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETM 304 (504)
T ss_pred HHHHHHHHh--hhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccc
Confidence 555444666 4443333221 2222223332 0133333344999999999999999999887
Q ss_pred HHHH-----HHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccccccc
Q 000322 1297 LVLM-----KARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVE 1371 (1670)
Q Consensus 1297 L~L~-----AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~~~de 1371 (1670)
+.+- +.-....+.+.+|+.++.++|.++|+++. +..+-++..+-.+.||.||.--+....--... .+-.+
T Consensus 305 ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~----~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn-~~~re 379 (504)
T KOG0624|consen 305 IRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQ----VLCDRAEAYLGDEMYDDAIHDYEKALELNESN-TRARE 379 (504)
T ss_pred eeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHH----HHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc-HHHHH
Confidence 7222 22223333477999999999999999999 44444777777778888887654422111111 12222
Q ss_pred chhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHH-HHhhccCC
Q 000322 1372 ISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDA-ALKAAASE 1439 (1670)
Q Consensus 1372 ALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDK-ALkanp~N 1439 (1670)
.++--++.-.+. -.-|+| -|||.=.- -+..|-..||-| |.+|-|+|
T Consensus 380 Gle~Akrlkkqs-------~kRDYY-----------KILGVkRn----AsKqEI~KAYRKlAqkWHPDN 426 (504)
T KOG0624|consen 380 GLERAKRLKKQS-------GKRDYY-----------KILGVKRN----ASKQEITKAYRKLAQKWHPDN 426 (504)
T ss_pred HHHHHHHHHHHh-------ccchHH-----------HHhhhccc----ccHHHHHHHHHHHHHhcCCcc
Confidence 333222221221 236888 78887443 356677788877 57999999
No 44
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=3.3e-06 Score=101.49 Aligned_cols=144 Identities=15% Similarity=0.046 Sum_probs=95.0
Q ss_pred hcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHHhCCCCCc-hHHHHHHHHH--HHHHHcCCh
Q 000322 1274 LNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVP-GIQCIWNQYV--EYALQNGRH 1348 (1670)
Q Consensus 1274 LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~-g~~caW~QLI--q~al~~en~ 1348 (1670)
.++.-.+...|+.+++++|....| -+.+.|++..+ +++....|..|..++|.|+. ||+..=+-+| +++-...++
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~-~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQ-SEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhc-cHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 569999999999999999999996 88888888887 99999999999999999999 5555422111 122233344
Q ss_pred HHHHHHHHH---HHH--hhhhccc-ccccchhhhccc--CCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhc
Q 000322 1349 DFAAELMDR---WFH--SVWKVQY-SQVEISDPLVAD--MSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQN 1420 (1670)
Q Consensus 1349 d~Ai~Lc~~---ff~--gia~~Q~-~~deALDaLrkg--ns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg 1420 (1670)
++++.|--. -|- +++.|.. +-.++..+|... -+|. -++.| .+.+.+|-- ++
T Consensus 418 ~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~--------~~Evy-----------~~fAeiLtD--qq 476 (606)
T KOG0547|consen 418 QKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN--------CPEVY-----------NLFAEILTD--QQ 476 (606)
T ss_pred HHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------CchHH-----------HHHHHHHhh--HH
Confidence 444444333 111 1222211 333444444333 2221 24556 677777777 78
Q ss_pred CHHHHHHHHHHHHhhccCC
Q 000322 1421 DWNEARLAIDAALKAAASE 1439 (1670)
Q Consensus 1421 ~~~EAfaAYDKALkanp~N 1439 (1670)
+++.|..-||+|+...|.+
T Consensus 477 qFd~A~k~YD~ai~LE~~~ 495 (606)
T KOG0547|consen 477 QFDKAVKQYDKAIELEPRE 495 (606)
T ss_pred hHHHHHHHHHHHHhhcccc
Confidence 8888888888888888875
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.67 E-value=3.9e-06 Score=99.54 Aligned_cols=286 Identities=9% Similarity=0.000 Sum_probs=182.2
Q ss_pred HHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHH
Q 000322 1059 IFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFL 1134 (1670)
Q Consensus 1059 lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL 1134 (1670)
+-...|....+...+.++.++.|+... .+..+...+ .+++|...|.+..+.++.+. +.+.+
T Consensus 93 la~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g--------~~~~A~~~l~~a~~~~p~~~-------l~~~~ 157 (409)
T TIGR00540 93 LKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRG--------DEARANQHLEEAAELAGNDN-------ILVEI 157 (409)
T ss_pred HHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHhCCcCc-------hHHHH
Confidence 334667788899999999999987533 456777778 89999999999888874444 56777
Q ss_pred HHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhh
Q 000322 1135 QMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELF 1214 (1670)
Q Consensus 1135 ~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGn~y~q~e~~KEAf 1214 (1670)
..++++.++|++++|+..+.++.. ..-.++ .....-...|+..+|- +++.
T Consensus 158 ~~a~l~l~~~~~~~Al~~l~~l~~--~~P~~~-~~l~ll~~~~~~~~d~---------------------------~~a~ 207 (409)
T TIGR00540 158 ARTRILLAQNELHAARHGVDKLLE--MAPRHK-EVLKLAEEAYIRSGAW---------------------------QALD 207 (409)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHHHHhhH---------------------------HHHH
Confidence 789999999999999999999886 221222 2333333344444443 3332
Q ss_pred ccCCCCcccch---hhHHHHHHHHHHHH-HHHhh---hcCCcchhhhh--hh---chhhHhHHHHHHHHHHhcCHHHHHH
Q 000322 1215 AIDWPPVQLED---DEKQRAIKLIEMAV-NSVEL---YSNGESLEKET--NL---RSAHCFAVNHIWCMAVLNGLECSMN 1282 (1670)
Q Consensus 1215 ~I~W~y~~vlk---dEPdnalAL~smA~-dYY~~---~~ndesla~~~--~~---kt~~~fKLN~IR~lI~LEDse~A~~ 1282 (1670)
.+ +..+++ .+|.....+..++. ..... ..+-+.+..-. .+ +-...+-+.+...++..++.++|.+
T Consensus 208 ~~---l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~ 284 (409)
T TIGR00540 208 DI---IDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQE 284 (409)
T ss_pred HH---HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHH
Confidence 22 222221 12232211111110 01100 00000110000 11 1133444455666677889999999
Q ss_pred HHHHHHHhCCCchhH----HHHHHHHhhcccCCccHHHHHHHHHhCCCCC--chHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000322 1283 LLEKYIKLYPSCLEL----VLMKARLQKHDFGDLSSVGFEEALIKWPKGV--PGIQCIWNQYVEYALQNGRHDFAAELMD 1356 (1670)
Q Consensus 1283 LfdklLk~~P~d~eL----~L~AAyL~~K~m~~~A~svle~AL~~~PkNa--~g~~caW~QLIq~al~~en~d~Ai~Lc~ 1356 (1670)
++.+.++..|++..+ .....++... .+..++..+++++...|+++ . +...|...+.+.|+|++|.+..+
T Consensus 285 ~l~~~l~~~pd~~~~~~~~l~~~~~l~~~-~~~~~~~~~e~~lk~~p~~~~~~----ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 285 IIFDGLKKLGDDRAISLPLCLPIPRLKPE-DNEKLEKLIEKQAKNVDDKPKCC----INRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred HHHHHHhhCCCcccchhHHHHHhhhcCCC-ChHHHHHHHHHHHHhCCCChhHH----HHHHHHHHHHHcccHHHHHHHHH
Confidence 999999999999974 3333333332 26678899999999999999 6 67777889999999999998774
Q ss_pred HHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhc
Q 000322 1357 RWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAA 1436 (1670)
Q Consensus 1357 ~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkan 1436 (1670)
+ ..++.. .| | . ....-++..+++ .|+.++|...|.++|+..
T Consensus 360 ~---------------a~a~~~--~p-----------~-------~--~~~~~La~ll~~--~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 360 N---------------VAACKE--QL-----------D-------A--NDLAMAADAFDQ--AGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred H---------------hHHhhc--CC-----------C-------H--HHHHHHHHHHHH--cCCHHHHHHHHHHHHHHH
Confidence 2 001110 01 1 0 012677888888 999999999999998654
No 46
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.67 E-value=1.3e-05 Score=105.81 Aligned_cols=339 Identities=11% Similarity=0.085 Sum_probs=188.7
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhC--CCCHH---HHHHHHhcCCCcccchhhH
Q 000322 1030 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHN--EGSYA---LWLMYINSRTPLNHRLDAY 1104 (1670)
Q Consensus 1030 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVeln--P~NY~---LwlmYInsr~slddrl~~Y 1104 (1670)
+.++.|+.+|....+ | +...|-.++..|.+.+...++.++|++..+.. |+.+. |..+|.+.+ .+
T Consensus 420 g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G--------~v 488 (1060)
T PLN03218 420 RAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG--------KV 488 (1060)
T ss_pred CCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCc--------CH
Confidence 335556655554443 2 45566666666666666666666666666542 32222 556666665 55
Q ss_pred HHHHHHHHHhhhcC-CCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCc
Q 000322 1105 DAALSVLCRCASAS-DGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDK 1183 (1670)
Q Consensus 1105 dkAI~aLe~las~~-~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR 1183 (1670)
++|+++|++|.... .|| ...|..|+..|++.|++++|++.+..+.. .|..|..
T Consensus 489 d~A~~vf~eM~~~Gv~Pd--------vvTynaLI~gy~k~G~~eeAl~lf~~M~~---~Gv~PD~--------------- 542 (1060)
T PLN03218 489 DAMFEVFHEMVNAGVEAN--------VHTFGALIDGCARAGQVAKAFGAYGIMRS---KNVKPDR--------------- 542 (1060)
T ss_pred HHHHHHHHHHHHcCCCCC--------HHHHHHHHHHHHHCcCHHHHHHHHHHHHH---cCCCCCH---------------
Confidence 67777776665532 234 45666777777777777777766655552 2333311
Q ss_pred chhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccch----hhHHHHHHHHHHHHHHHhhhcCCcchhhhhhh--
Q 000322 1184 LIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLED----DEKQRAIKLIEMAVNSVELYSNGESLEKETNL-- 1257 (1670)
Q Consensus 1184 ~~AWL~~iYllrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlk----dEPdnalAL~smA~dYY~~~~ndesla~~~~~-- 1257 (1670)
..|..| -..|.+.|..++|+.+ +....+ ..|+.... ..+ ++.|.. .|+-+.+...-.
T Consensus 543 ----------vTYnsL-I~a~~k~G~~deA~~l---f~eM~~~~~gi~PD~vTy-naL-I~ay~k-~G~ldeA~elf~~M 605 (1060)
T PLN03218 543 ----------VVFNAL-ISACGQSGAVDRAFDV---LAEMKAETHPIDPDHITV-GAL-MKACAN-AGQVDRAKEVYQMI 605 (1060)
T ss_pred ----------HHHHHH-HHHHHHCCCHHHHHHH---HHHHHHhcCCCCCcHHHH-HHH-HHHHHH-CCCHHHHHHHHHHH
Confidence 112221 1223333444445444 333321 23443211 122 232322 333332222211
Q ss_pred ---ch--hhHhHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCchhH-HHHHHHHhhcccCCccHHHHHHHHHhCC-CCC
Q 000322 1258 ---RS--AHCFAVNHIWCMAVLNGLECSMNLLEKYIKL--YPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWP-KGV 1328 (1670)
Q Consensus 1258 ---kt--~~~fKLN~IR~lI~LEDse~A~~LfdklLk~--~P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~~~P-kNa 1328 (1670)
.+ ...+=-.+|..|...++.++|+.+|+.+.+. .|+.... .|..+|....+ .++|..+|+.++.... -+.
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~-~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD-LDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCCH
Confidence 11 1111113466666678999999999999887 6776666 77777765554 7889999999887542 233
Q ss_pred chHHHHHHHHHHHHHHcCChHHHHHHHHHH-----------HHh-hhhc-cc-ccccchhhhcccCCCCCCCCCCCCCcc
Q 000322 1329 PGIQCIWNQYVEYALQNGRHDFAAELMDRW-----------FHS-VWKV-QY-SQVEISDPLVADMSHSSPESTSTSDPE 1394 (1670)
Q Consensus 1329 ~g~~caW~QLIq~al~~en~d~Ai~Lc~~f-----------f~g-ia~~-Q~-~~deALDaLrkgns~i~~es~s~~vSD 1394 (1670)
. .|+-||....+.|++++|.++..+. |.. |.-+ +. +.++|+++|+.-... .+..|
T Consensus 685 ~----tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-------Gi~Pd 753 (1060)
T PLN03218 685 V----SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-------GLCPN 753 (1060)
T ss_pred H----HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-------CCCCC
Confidence 3 7889999999999999999998762 111 1111 11 667777777743111 11123
Q ss_pred cccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhh--ccCCcHHHHH
Q 000322 1395 FSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKA--AASEHFKHCV 1445 (1670)
Q Consensus 1395 fy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALka--np~N~~i~cL 1445 (1670)
. .+|..|-.++.+ .|++++|...|+.+++. .|+-....||
T Consensus 754 ~---------~Ty~sLL~a~~k--~G~le~A~~l~~~M~k~Gi~pd~~tynsL 795 (1060)
T PLN03218 754 T---------ITYSILLVASER--KDDADVGLDLLSQAKEDGIKPNLVMCRCI 795 (1060)
T ss_pred H---------HHHHHHHHHHHH--CCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 1 234555567777 88999999999988854 4444333444
No 47
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.60 E-value=9.3e-06 Score=92.71 Aligned_cols=123 Identities=12% Similarity=-0.019 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----H
Q 000322 1011 NEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----L 1086 (1670)
Q Consensus 1011 ~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----L 1086 (1670)
.+.|..++..+... |.++.|...|.++|+++|+.+.+|+.++.+|...+...++.+.|++|++++|++.. +
T Consensus 64 a~~~~~~g~~~~~~-----g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~l 138 (296)
T PRK11189 64 AQLHYERGVLYDSL-----GLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNR 138 (296)
T ss_pred HHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 36788888876655 45699999999999999999999999999999999999999999999999999876 5
Q ss_pred HHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHh
Q 000322 1087 WLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISR 1155 (1670)
Q Consensus 1087 wlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~r 1155 (1670)
+..|...+ .|++|++.|.+..+.+|.+. .......+....+++++|+..+.+
T Consensus 139 g~~l~~~g--------~~~eA~~~~~~al~~~P~~~---------~~~~~~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 139 GIALYYGG--------RYELAQDDLLAFYQDDPNDP---------YRALWLYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred HHHHHHCC--------CHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHccCCHHHHHHHHHH
Confidence 56677777 88999999999999884332 112222344567889999997754
No 48
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.59 E-value=1.7e-06 Score=98.62 Aligned_cols=114 Identities=13% Similarity=0.046 Sum_probs=99.2
Q ss_pred hhhHHHHHHHHHHHHHh---CCCC-HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccc
Q 000322 1029 LEGMKKALSLLSRALEA---DPTS-EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHR 1100 (1670)
Q Consensus 1029 ~g~ydAALdLLsrALEI---NPtS-aeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddr 1100 (1670)
.+..+.++.-|...|+. +|.. +.+|+.++.+|...+...++...|++|++++|++.. ++.+|...+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g------ 112 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAG------ 112 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC------
Confidence 45668899999999974 4443 778999999999999999999999999999999877 677888888
Q ss_pred hhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000322 1101 LDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1101 l~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1158 (1670)
.|++|+..|.+..+.. |+. .+.++.+..+|...|+++.|++.+.+..+
T Consensus 113 --~~~~A~~~~~~Al~l~-P~~-------~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 113 --NFDAAYEAFDSVLELD-PTY-------NYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred --CHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999887 565 78899999999999999999998877765
No 49
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.58 E-value=2.5e-05 Score=99.04 Aligned_cols=373 Identities=14% Similarity=0.096 Sum_probs=215.9
Q ss_pred cHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH---
Q 000322 1010 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPT-SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--- 1085 (1670)
Q Consensus 1010 d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPt-SaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~--- 1085 (1670)
++++.+..|..+++- |+|..|+.+|..++...+. ++.+|+.++.+|+..+..++|.++|+++|.++|+++.
T Consensus 413 ~~dL~~d~a~al~~~-----~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri 487 (895)
T KOG2076|consen 413 DVDLYLDLADALTNI-----GKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARI 487 (895)
T ss_pred hHHHHHHHHHHHHhc-----ccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhh
Confidence 347888888877776 5689999999999887775 5789999999999999999999999999999999999
Q ss_pred -HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCC----cchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccc
Q 000322 1086 -LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD----EMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPA 1160 (1670)
Q Consensus 1086 -LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~D----r~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~A 1160 (1670)
|+.+|..++ .-++|+++|+++. + +| ..++.-...-++.-++++|.+.|+.++-|.+-.-|...-
T Consensus 488 ~Lasl~~~~g--------~~EkalEtL~~~~--~-~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~ 556 (895)
T KOG2076|consen 488 TLASLYQQLG--------NHEKALETLEQII--N-PDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDF 556 (895)
T ss_pred hHHHHHHhcC--------CHHHHHHHHhccc--C-CCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 999999999 8899999999876 2 44 222333445577889999999999998887654443200
Q ss_pred ------------------cC---CCCcccchHHHHHHhhccCCcchh--hHHHH--H-HHHhhccc-hHH----------
Q 000322 1161 ------------------TG---SNDRHSLFLSDILTCLTISDKLIF--WVCCV--Y-LVIYRKLP-DAV---------- 1203 (1670)
Q Consensus 1161 ------------------l~---g~sE~~lSLsKi~~YLt~sDR~~A--WL~~i--Y-llrYrvLP-Gn~---------- 1203 (1670)
+. +-.. ++.-..++.-...+|.-.+ -++.- . -...+.|. .+|
T Consensus 557 ~~~~~~f~~~~k~r~~~~~~~~~~~~~-~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~ 635 (895)
T KOG2076|consen 557 LKKRYIFPRNKKKRRRAIAGTTSKRYS-ELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILS 635 (895)
T ss_pred HHHHHhcchHHHHHHHhhccccccccc-hhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHH
Confidence 00 0000 1111112222222221111 00000 0 00001110 111
Q ss_pred HhhhhhhhhhhccCCCC--cccchhhHHH--HHHHHHHHHHHHhhhcCCcchhhhh----------hhchhhHhHHH-HH
Q 000322 1204 LQLLECEKELFAIDWPP--VQLEDDEKQR--AIKLIEMAVNSVELYSNGESLEKET----------NLRSAHCFAVN-HI 1268 (1670)
Q Consensus 1204 y~q~e~~KEAf~I~W~y--~~vlkdEPdn--alAL~smA~dYY~~~~ndesla~~~----------~~kt~~~fKLN-~I 1268 (1670)
+...++..||+.|---- ..+.-.+++. -+.-+.++..+|.. +...+-+- +.++-+.+--| .+
T Consensus 636 L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~---d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~ 712 (895)
T KOG2076|consen 636 LAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYAR---DPGDAFSYLRSVITQFQFYLDVYQLNLWNLDF 712 (895)
T ss_pred HHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 12223344443320000 0000001110 01111111112211 11100000 11222222223 23
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCc-hhH-HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcC
Q 000322 1269 WCMAVLNGLECSMNLLEKYIKLYPSC-LEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNG 1346 (1670)
Q Consensus 1269 R~lI~LEDse~A~~LfdklLk~~P~d-~eL-~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~e 1346 (1670)
..+....+-.+-..++..++..+|.+ ..+ .+++-++.....-..|+..|-+|+..+|+++-.-.|+=..+|.++++.
T Consensus 713 s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr- 791 (895)
T KOG2076|consen 713 SYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQR- 791 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH-
Confidence 33333445566777888888888888 455 777777666654567888999999999999997777766677777655
Q ss_pred ChHHHHHHHHH---HHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHH
Q 000322 1347 RHDFAAELMDR---WFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWN 1423 (1670)
Q Consensus 1347 n~d~Ai~Lc~~---ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~ 1423 (1670)
.+.++ -++||+..+. +.+ +|.+ ..+|+ .|==||-+||+ -|-..
T Consensus 792 ------~v~~Rh~~i~qG~afL~R-Y~~----lR~~-------------------~~~QE--a~YNigRayh~--~gl~~ 837 (895)
T KOG2076|consen 792 ------RVSNRHAQIAQGFAFLKR-YKE----LRRC-------------------EEKQE--AFYNIGRAYHQ--IGLVH 837 (895)
T ss_pred ------HHhhhHHHHHHHHHHHHH-HHH----hhcc-------------------HHHHH--HHHHHHHHHHH--cccHH
Confidence 22333 3556665532 111 1100 01122 22346779999 99999
Q ss_pred HHHHHHHHHHhhcc
Q 000322 1424 EARLAIDAALKAAA 1437 (1670)
Q Consensus 1424 EAfaAYDKALkanp 1437 (1670)
=|..-|+|+|...|
T Consensus 838 LA~~YYekvL~~~p 851 (895)
T KOG2076|consen 838 LAVSYYEKVLEVSP 851 (895)
T ss_pred HHHHHHHHHhCCCc
Confidence 99999999999875
No 50
>PLN03077 Protein ECB2; Provisional
Probab=98.56 E-value=9.7e-06 Score=104.15 Aligned_cols=347 Identities=10% Similarity=0.023 Sum_probs=190.1
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhh--CCCCHH---HHHHHHhcCCCcccchhh
Q 000322 1029 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKH--NEGSYA---LWLMYINSRTPLNHRLDA 1103 (1670)
Q Consensus 1029 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVel--nP~NY~---LwlmYInsr~slddrl~~ 1103 (1670)
.|+++.|..+|....+ .+...|..++..|.+.+..+++.++|+...+. .|+.+. +...|.+.+ .
T Consensus 336 ~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g--------~ 404 (857)
T PLN03077 336 LGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLG--------D 404 (857)
T ss_pred cCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccc--------h
Confidence 3667888888887543 45677888888888888888888888866543 366555 444556666 6
Q ss_pred HHHHHHHHHHhhhcC-CCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHH-HHHHhhccC
Q 000322 1104 YDAALSVLCRCASAS-DGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLS-DILTCLTIS 1181 (1670)
Q Consensus 1104 YdkAI~aLe~las~~-~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLs-Ki~~YLt~s 1181 (1670)
+++|.++++.+.+.. .++ ..++-.|++.|+..|++++|++.++++.. .+ ..+.. -|..|.
T Consensus 405 ~~~a~~l~~~~~~~g~~~~--------~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~d--~vs~~~mi~~~~--- 466 (857)
T PLN03077 405 LDVGVKLHELAERKGLISY--------VVVANALIEMYSKCKCIDKALEVFHNIPE-----KD--VISWTSIIAGLR--- 466 (857)
T ss_pred HHHHHHHHHHHHHhCCCcc--------hHHHHHHHHHHHHcCCHHHHHHHHHhCCC-----CC--eeeHHHHHHHHH---
Confidence 788888888877653 233 56788899999999999999997777653 11 11211 222222
Q ss_pred CcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccch-hhHHHHHHHHHHHHHHHhhhcCCcchhhhh-----
Q 000322 1182 DKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLED-DEKQRAIKLIEMAVNSVELYSNGESLEKET----- 1255 (1670)
Q Consensus 1182 DR~~AWL~~iYllrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlk-dEPdnalAL~smA~dYY~~~~ndesla~~~----- 1255 (1670)
++|...||+.+ +.+.++ ..|+......- +..|.. .++-+...+.
T Consensus 467 ------------------------~~g~~~eA~~l---f~~m~~~~~pd~~t~~~l--L~a~~~-~g~l~~~~~i~~~~~ 516 (857)
T PLN03077 467 ------------------------LNNRCFEALIF---FRQMLLTLKPNSVTLIAA--LSACAR-IGALMCGKEIHAHVL 516 (857)
T ss_pred ------------------------HCCCHHHHHHH---HHHHHhCCCCCHhHHHHH--HHHHhh-hchHHHhHHHHHHHH
Confidence 23333333333 222211 12332222211 222322 2222222111
Q ss_pred --hhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhhcccCCccHHHHHHHHH--hCCCCCch
Q 000322 1256 --NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALI--KWPKGVPG 1330 (1670)
Q Consensus 1256 --~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~--~~PkNa~g 1330 (1670)
....+..+.-.+|..|...++.+.|..+|+.. .|+-+.. .|..+|....+ .++|+.+|++... ..|+...
T Consensus 517 ~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~-~~~A~~lf~~M~~~g~~Pd~~T- 591 (857)
T PLN03077 517 RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGK-GSMAVELFNRMVESGVNPDEVT- 591 (857)
T ss_pred HhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCccc-
Confidence 11111112223344444466777777777664 3333333 55556644443 6677777776665 3455544
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHH------------hhhhcc---cccccchhhhcccCCCCCCCCCCCCCccc
Q 000322 1331 IQCIWNQYVEYALQNGRHDFAAELMDRWFH------------SVWKVQ---YSQVEISDPLVADMSHSSPESTSTSDPEF 1395 (1670)
Q Consensus 1331 ~~caW~QLIq~al~~en~d~Ai~Lc~~ff~------------gia~~Q---~~~deALDaLrkgns~i~~es~s~~vSDf 1395 (1670)
++-+|...-+.|.++++.++...--. .+-..- .+.++|.+.+++- ++.++ ...
T Consensus 592 ----~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m--~~~pd------~~~ 659 (857)
T PLN03077 592 ----FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM--PITPD------PAV 659 (857)
T ss_pred ----HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC--CCCCC------HHH
Confidence 55556666666777776666655221 000000 0456666666532 11110 122
Q ss_pred ccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhh
Q 000322 1396 SVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISW 1467 (1670)
Q Consensus 1396 y~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~ 1467 (1670)
| -++|+-| .. +|+.+.|..+.++.++..|++.-..++.=-.|. .....++|+++..
T Consensus 660 ~----------~aLl~ac-~~--~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya---~~g~~~~a~~vr~ 715 (857)
T PLN03077 660 W----------GALLNAC-RI--HRHVELGELAAQHIFELDPNSVGYYILLCNLYA---DAGKWDEVARVRK 715 (857)
T ss_pred H----------HHHHHHH-HH--cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH---HCCChHHHHHHHH
Confidence 3 1455533 33 899999999999999999976333333222332 2344777777666
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.53 E-value=4.7e-06 Score=96.59 Aligned_cols=255 Identities=15% Similarity=0.097 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH---------HHHHHHhcCCCcccchh
Q 000322 1032 MKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---------LWLMYINSRTPLNHRLD 1102 (1670)
Q Consensus 1032 ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~---------LwlmYInsr~slddrl~ 1102 (1670)
-|+|.++|...++.+|...++...|..+|.++|+...+..+-+.-+ ..|+-.. |+.=|...+
T Consensus 51 ~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~-~spdlT~~qr~lAl~qL~~Dym~aG-------- 121 (389)
T COG2956 51 PDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLL-ESPDLTFEQRLLALQQLGRDYMAAG-------- 121 (389)
T ss_pred cchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHh-cCCCCchHHHHHHHHHHHHHHHHhh--------
Confidence 3999999999999999999999999999999998777766655443 3433221 788899888
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHH------
Q 000322 1103 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILT------ 1176 (1670)
Q Consensus 1103 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~------ 1176 (1670)
-||+|-++|..+..-- + .....+.+|+.+|.++.+++|||.+=.+|.. +.+. + ...+.-+-
T Consensus 122 l~DRAE~~f~~L~de~--e------fa~~AlqqLl~IYQ~treW~KAId~A~~L~k--~~~q-~--~~~eIAqfyCELAq 188 (389)
T COG2956 122 LLDRAEDIFNQLVDEG--E------FAEGALQQLLNIYQATREWEKAIDVAERLVK--LGGQ-T--YRVEIAQFYCELAQ 188 (389)
T ss_pred hhhHHHHHHHHHhcch--h------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--cCCc-c--chhHHHHHHHHHHH
Confidence 8999999998886632 2 1278899999999999999999998888885 4432 2 12222221
Q ss_pred -hhccCCcchh--hHHHHH-----HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCC
Q 000322 1177 -CLTISDKLIF--WVCCVY-----LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNG 1248 (1670)
Q Consensus 1177 -YLt~sDR~~A--WL~~iY-----llrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~nd 1248 (1670)
++..+|-..| ||...+ -+|=.+++|++++..|....|... +..++.-||+.+--+..
T Consensus 189 ~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~---~e~v~eQn~~yl~evl~------------ 253 (389)
T COG2956 189 QALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEA---LERVLEQNPEYLSEVLE------------ 253 (389)
T ss_pred HHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHH---HHHHHHhChHHHHHHHH------------
Confidence 2222222222 555554 233456666666666666665555 44444444443333322
Q ss_pred cchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhcccCCccHHHHHHHHHhCCCCC
Q 000322 1249 ESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGV 1328 (1670)
Q Consensus 1249 esla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m~~~A~svle~AL~~~PkNa 1328 (1670)
.+.-||..+++.+..++.+.++|+..+...-+.+++.+++.+++++.|...+-+-|...|.=.
T Consensus 254 -----------------~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~ 316 (389)
T COG2956 254 -----------------MLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR 316 (389)
T ss_pred -----------------HHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH
Confidence 234566667788888888888888888776666667777777778888877788888888643
Q ss_pred chHHHHHHHHHHHHHHc
Q 000322 1329 PGIQCIWNQYVEYALQN 1345 (1670)
Q Consensus 1329 ~g~~caW~QLIq~al~~ 1345 (1670)
.+..|+++.+..
T Consensus 317 -----gf~rl~~~~l~d 328 (389)
T COG2956 317 -----GFHRLMDYHLAD 328 (389)
T ss_pred -----HHHHHHHhhhcc
Confidence 356667666543
No 52
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.52 E-value=3.5e-06 Score=109.41 Aligned_cols=241 Identities=17% Similarity=0.242 Sum_probs=170.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhh-CCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHH
Q 000322 1038 LLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKH-NEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLC 1112 (1670)
Q Consensus 1038 LLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVel-nP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe 1112 (1670)
=|.|-+..+|+++.+|..|..++.+..+-+++++.+++|+.- |+.-.. +|--|+|.+..++.. +.-..++|
T Consensus 1446 DferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~e----esl~kVFe 1521 (1710)
T KOG1070|consen 1446 DFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTE----ESLKKVFE 1521 (1710)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcH----HHHHHHHH
Confidence 378889999999999999999999999999999999999853 443333 999999999655521 34455666
Q ss_pred HhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHH
Q 000322 1113 RCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY 1192 (1670)
Q Consensus 1113 ~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iY 1192 (1670)
++..-. |- .=+++.|..+|..++.++.|.+.++.++. || ++.+..|+.+.-
T Consensus 1522 RAcqyc--d~-------~~V~~~L~~iy~k~ek~~~A~ell~~m~K--------------KF------~q~~~vW~~y~~ 1572 (1710)
T KOG1070|consen 1522 RACQYC--DA-------YTVHLKLLGIYEKSEKNDEADELLRLMLK--------------KF------GQTRKVWIMYAD 1572 (1710)
T ss_pred HHHHhc--ch-------HHHHHHHHHHHHHhhcchhHHHHHHHHHH--------------Hh------cchhhHHHHHHH
Confidence 665544 33 67999999999999999999997777663 12 356677876543
Q ss_pred HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHH----HHH
Q 000322 1193 LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAV----NHI 1268 (1670)
Q Consensus 1193 llrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKL----N~I 1268 (1670)
+++..+..++|-. ++. ++..++|- ..|
T Consensus 1573 ----------fLl~~ne~~aa~~------------------lL~---------------------rAL~~lPk~eHv~~I 1603 (1710)
T KOG1070|consen 1573 ----------FLLRQNEAEAARE------------------LLK---------------------RALKSLPKQEHVEFI 1603 (1710)
T ss_pred ----------HHhcccHHHHHHH------------------HHH---------------------HHHhhcchhhhHHHH
Confidence 2233322222222 222 23333333 235
Q ss_pred HHHHH----hcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhccc-CCccHHHHHHHHHh--CCCCCchHHHHHHHHHHH
Q 000322 1269 WCMAV----LNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDF-GDLSSVGFEEALIK--WPKGVPGIQCIWNQYVEY 1341 (1670)
Q Consensus 1269 R~lI~----LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m-~~~A~svle~AL~~--~PkNa~g~~caW~QLIq~ 1341 (1670)
+.++. .+|.+.++.||.-+|..||.=.+||++...|+.+.+ ....+.+|++|+.+ -|+...-.-..| ++|
T Consensus 1604 skfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw---Ley 1680 (1710)
T KOG1070|consen 1604 SKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW---LEY 1680 (1710)
T ss_pred HHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH---HHH
Confidence 55544 459999999999999999999999999999999975 55777999999875 466666444455 666
Q ss_pred HHHc---CChHHHHHHHHHHHHhhh
Q 000322 1342 ALQN---GRHDFAAELMDRWFHSVW 1363 (1670)
Q Consensus 1342 al~~---en~d~Ai~Lc~~ff~gia 1363 (1670)
+-.. ++.+.++.=+.+|..++.
T Consensus 1681 Ek~~Gde~~vE~VKarA~EYv~s~~ 1705 (1710)
T KOG1070|consen 1681 EKSHGDEKNVEYVKARAKEYVESIK 1705 (1710)
T ss_pred HHhcCchhhHHHHHHHHHHHHHHhh
Confidence 6654 455555555666777654
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.50 E-value=3e-06 Score=86.81 Aligned_cols=133 Identities=14% Similarity=0.151 Sum_probs=112.4
Q ss_pred hhccccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCC--C
Q 000322 1005 KQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNE--G 1082 (1670)
Q Consensus 1005 e~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP--~ 1082 (1670)
+..|.+...|..+|..+...+ +++.|...|.++++.+|.+..+|+.++.+|...+...++..+|++|++..+ .
T Consensus 59 ~~~p~~~~~~~~la~~~~~~~-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 133 (234)
T TIGR02521 59 EHDPDDYLAYLALALYYQQLG-----ELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQ 133 (234)
T ss_pred HhCcccHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc
Confidence 345667788888888887764 569999999999999999999999999999999999999999999998642 2
Q ss_pred CHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000322 1083 SYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1083 NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1158 (1670)
... ++..|...+ .+++|+..|.+..... ++. .+.++.+..+|...|++++|+..+.+...
T Consensus 134 ~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~-~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 197 (234)
T TIGR02521 134 PARSLENAGLCALKAG--------DFDKAEKYLTRALQID-PQR-------PESLLELAELYYLRGQYKDARAYLERYQQ 197 (234)
T ss_pred chHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhC-cCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222 667777777 8899999999988877 454 67899999999999999999998887765
No 54
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.49 E-value=1.4e-06 Score=94.73 Aligned_cols=122 Identities=9% Similarity=0.081 Sum_probs=103.1
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHH
Q 000322 1028 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAA 1107 (1670)
Q Consensus 1028 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkA 1107 (1670)
..+.++.+...|.++|+.+|+++++|+.++.+|...+....+.+.|++|++++|++-.++..|..--..-.++. .+++|
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~-~~~~A 129 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQH-MTPQT 129 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCC-CcHHH
Confidence 45777999999999999999999999999999999999999999999999999999985554443210001111 36999
Q ss_pred HHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000322 1108 LSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1108 I~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1158 (1670)
+.+|.+..+.. |+. .++++.+...+.+.|+|++||..+.++..
T Consensus 130 ~~~l~~al~~d-P~~-------~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 130 REMIDKALALD-ANE-------VTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhC-CCC-------hhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999998 555 89999999999999999999999999876
No 55
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.48 E-value=1.8e-05 Score=93.77 Aligned_cols=250 Identities=14% Similarity=0.027 Sum_probs=157.1
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhh
Q 000322 1029 LEGMKKALSLLSRALEADPTSEILW-ITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDA 1103 (1670)
Q Consensus 1029 ~g~ydAALdLLsrALEINPtSaeaW-y~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~ 1103 (1670)
.|+++.|...|.++.+.+|++..+. ...+.++...++.+.+.+.++++++.+|+|-+ +..+|+..+ .
T Consensus 131 ~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~g--------d 202 (398)
T PRK10747 131 RGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTG--------A 202 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH--------h
Confidence 3668999999999999999996443 44488999999999999999999999999986 888999998 9
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCc
Q 000322 1104 YDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDK 1183 (1670)
Q Consensus 1104 YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR 1183 (1670)
+++|+.+|..+.+...-+..+....-...++.++.......+-+...+.+..+-. ..+
T Consensus 203 w~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~----------------------~~~ 260 (398)
T PRK10747 203 WSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSR----------------------KTR 260 (398)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCH----------------------HHh
Confidence 9999999999887652221000000012223333332223222222222222110 001
Q ss_pred chhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHh
Q 000322 1184 LIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCF 1263 (1670)
Q Consensus 1184 ~~AWL~~iYllrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~f 1263 (1670)
....+... .+..+...|...+|.. ++..+.+ . ..+.
T Consensus 261 ~~~~~~~~--------~A~~l~~~g~~~~A~~------------------~L~~~l~---~---------------~~~~ 296 (398)
T PRK10747 261 HQVALQVA--------MAEHLIECDDHDTAQQ------------------IILDGLK---R---------------QYDE 296 (398)
T ss_pred CCHHHHHH--------HHHHHHHCCCHHHHHH------------------HHHHHHh---c---------------CCCH
Confidence 01111111 2223333344444433 3333211 0 0001
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhcc-cCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Q 000322 1264 AVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHD-FGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYA 1342 (1670)
Q Consensus 1264 KLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~-m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~a 1342 (1670)
.+-.+.-.+..++.+.++..+++.++.+|.++++.+..+++..+. .-.+|+..|+.++...|++.. +.-|.+..
T Consensus 297 ~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-----~~~La~~~ 371 (398)
T PRK10747 297 RLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-----YAWLADAL 371 (398)
T ss_pred HHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-----HHHHHHHH
Confidence 111111112346899999999999999999999965555554443 377999999999999999866 33477788
Q ss_pred HHcCChHHHHHHHHH
Q 000322 1343 LQNGRHDFAAELMDR 1357 (1670)
Q Consensus 1343 l~~en~d~Ai~Lc~~ 1357 (1670)
.+.|+.++|.++-++
T Consensus 372 ~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 372 DRLHKPEEAAAMRRD 386 (398)
T ss_pred HHcCCHHHHHHHHHH
Confidence 889999999777665
No 56
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.45 E-value=1e-06 Score=108.47 Aligned_cols=216 Identities=16% Similarity=0.149 Sum_probs=164.3
Q ss_pred HHHHHHHH-HHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCC-CHH---HHHHHHhcCCCcccchhhHHHHH
Q 000322 1034 KALSLLSR-ALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG-SYA---LWLMYINSRTPLNHRLDAYDAAL 1108 (1670)
Q Consensus 1034 AALdLLsr-ALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~-NY~---LwlmYInsr~slddrl~~YdkAI 1108 (1670)
-+|.+|++ .++.+|++|+.|+.++.+|+-+++-+.+..+|++||+++|+ .|. ++-=++-.+ .||+|.
T Consensus 404 v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~e--------e~d~a~ 475 (638)
T KOG1126|consen 404 VALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATE--------EFDKAM 475 (638)
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhH--------HHHhHH
Confidence 34555554 35789999999999999999999888999999999999983 222 334455555 899999
Q ss_pred HHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhH
Q 000322 1109 SVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWV 1188 (1670)
Q Consensus 1109 ~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL 1188 (1670)
..|-.+.... +.- --.|+=|--.|..+++++.|.- -++.|++ .|| +..+=+
T Consensus 476 ~~fr~Al~~~-~rh-------YnAwYGlG~vy~Kqek~e~Ae~----~fqkA~~-INP----------------~nsvi~ 526 (638)
T KOG1126|consen 476 KSFRKALGVD-PRH-------YNAWYGLGTVYLKQEKLEFAEF----HFQKAVE-INP----------------SNSVIL 526 (638)
T ss_pred HHHHhhhcCC-chh-------hHHHHhhhhheeccchhhHHHH----HHHhhhc-CCc----------------cchhHH
Confidence 9997777776 454 6688888999999999999987 3444444 466 122334
Q ss_pred HHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHH
Q 000322 1189 CCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHI 1268 (1670)
Q Consensus 1189 ~~iYllrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~I 1268 (1670)
|| .|.++.+.+..++|+.+ +.++...||.+.+..|.+ .
T Consensus 527 ~~---------~g~~~~~~k~~d~AL~~---~~~A~~ld~kn~l~~~~~------------------------------~ 564 (638)
T KOG1126|consen 527 CH---------IGRIQHQLKRKDKALQL---YEKAIHLDPKNPLCKYHR------------------------------A 564 (638)
T ss_pred hh---------hhHHHHHhhhhhHHHHH---HHHHHhcCCCCchhHHHH------------------------------H
Confidence 44 35567777888888888 777777777777777665 3
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCchhH-HHHH-HHHhhcccCCccHHHHHHHHHhCCCCCc
Q 000322 1269 WCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMK-ARLQKHDFGDLSSVGFEEALIKWPKGVP 1329 (1670)
Q Consensus 1269 R~lI~LEDse~A~~LfdklLk~~P~d~eL-~L~A-AyL~~K~m~~~A~svle~AL~~~PkNa~ 1329 (1670)
+.+..+++-++|+..++.+-+..|++.-+ .|.+ .|-++. +...|+.-|--|+..+|+-..
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~-~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLG-NTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHc-cchHHHHhhHHHhcCCCccch
Confidence 45556779999999999999999999999 4433 343444 488999999999999999887
No 57
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.44 E-value=0.00022 Score=88.36 Aligned_cols=136 Identities=17% Similarity=0.228 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHH
Q 000322 1012 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPT--SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLM 1089 (1670)
Q Consensus 1012 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPt--SaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~Lwlm 1089 (1670)
.+||.+....+.|.. ...-...|.+||..-|= -.-+|-.|+.+-...+-++-...-|++=++++|....=..-
T Consensus 103 RIwl~Ylq~l~~Q~~-----iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie 177 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGL-----ITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIE 177 (835)
T ss_pred HHHHHHHHHHHhcch-----HHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 789999988888864 34455566666666664 34567777777666666666666777777777766554344
Q ss_pred HHhcCCCcccchhhHHHH-----------------HHHHHHhhhcCCCCcch--------------hhhhhHHHHHHHHH
Q 000322 1090 YINSRTPLNHRLDAYDAA-----------------LSVLCRCASASDGDEMH--------------ASACILDLFLQMLQ 1138 (1670)
Q Consensus 1090 YInsr~slddrl~~YdkA-----------------I~aLe~las~~~~Dr~~--------------~Sa~iLDILL~Lvq 1138 (1670)
|+.....+++....|..- -..||++.+++ |++.+ -+-++.=+|..|++
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~-p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQN-PDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLAD 256 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhC-cchhcccCHHHHHHhhcccCcHHHHHHHHHHHH
Confidence 444432222221111111 11234444444 33211 02245667888899
Q ss_pred HHHHhcCHHHHHHHH
Q 000322 1139 CFCMSGNTEKAIQRI 1153 (1670)
Q Consensus 1139 LY~qSGnydKAI~ti 1153 (1670)
-|..+|.++||..++
T Consensus 257 YYIr~g~~ekarDvy 271 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVY 271 (835)
T ss_pred HHHHhhhhHHHHHHH
Confidence 999999999998855
No 58
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.43 E-value=2.6e-05 Score=87.54 Aligned_cols=203 Identities=15% Similarity=0.126 Sum_probs=146.3
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HH
Q 000322 1012 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LW 1087 (1670)
Q Consensus 1012 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----Lw 1087 (1670)
.+-|.+|+.||.+. ++.+|..-|..||++||++.-+|..++.+|...|..+.++++|++|+.++|+|=. .+
T Consensus 36 ~arlqLal~YL~~g-----d~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG 110 (250)
T COG3063 36 KARLQLALGYLQQG-----DYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHHCC-----CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhh
Confidence 77899999999995 4699999999999999999999999999999999999999999999999999877 33
Q ss_pred HHHHhcCCCcccchhhHHHHHHHHHHhhhcC-CCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCc
Q 000322 1088 LMYINSRTPLNHRLDAYDAALSVLCRCASAS-DGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDR 1166 (1670)
Q Consensus 1088 lmYInsr~slddrl~~YdkAI~aLe~las~~-~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE 1166 (1670)
++.=.++ .|+.|...|+++...- =+.. -|.|.-+.-|-.+.|..++|-..+.|=+. ++-..+
T Consensus 111 ~FLC~qg--------~~~eA~q~F~~Al~~P~Y~~~-------s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~ 173 (250)
T COG3063 111 AFLCAQG--------RPEEAMQQFERALADPAYGEP-------SDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFP 173 (250)
T ss_pred HHHHhCC--------ChHHHHHHHHHHHhCCCCCCc-------chhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCC
Confidence 3333444 5899999998876641 0233 78899999999999999999986666554 222222
Q ss_pred ccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhc
Q 000322 1167 HSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYS 1246 (1670)
Q Consensus 1167 ~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ 1246 (1670)
...++..+.+...+|. -.|...+ +-|.+ +
T Consensus 174 -~~~l~~a~~~~~~~~y---------------------------------------------~~Ar~~~----~~~~~-~ 202 (250)
T COG3063 174 -PALLELARLHYKAGDY---------------------------------------------APARLYL----ERYQQ-R 202 (250)
T ss_pred -hHHHHHHHHHHhcccc---------------------------------------------hHHHHHH----HHHHh-c
Confidence 2222222222222222 1122222 22332 2
Q ss_pred CCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH
Q 000322 1247 NGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL 1297 (1670)
Q Consensus 1247 ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL 1297 (1670)
+ .-.+..++|- ||+-..+||...+-..=.++.+..|...++
T Consensus 203 ~---------~~~A~sL~L~-iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 203 G---------GAQAESLLLG-IRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred c---------cccHHHHHHH-HHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 2 1333556665 777666899999999999999999999887
No 59
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.41 E-value=7.2e-05 Score=92.57 Aligned_cols=113 Identities=16% Similarity=0.157 Sum_probs=103.2
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHH
Q 000322 1030 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1105 (1670)
Q Consensus 1030 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~Yd 1105 (1670)
++|.+.|.+.+..|+-+|.-.+-.-..+.....++...++.++...|+..++.++. ++++|-..+ .|+
T Consensus 21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK--------~Y~ 92 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK--------KYD 92 (700)
T ss_pred HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh--------hHH
Confidence 56899999999999999999999999999989999999999999999999999998 556777777 899
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000322 1106 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1106 kAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1158 (1670)
+||..|-++..-. +|+ +.||--+.-|-.|-|+|+-...+-+++++
T Consensus 93 eaiKcy~nAl~~~-~dN-------~qilrDlslLQ~QmRd~~~~~~tr~~LLq 137 (700)
T KOG1156|consen 93 EAIKCYRNALKIE-KDN-------LQILRDLSLLQIQMRDYEGYLETRNQLLQ 137 (700)
T ss_pred HHHHHHHHHHhcC-CCc-------HHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 9999998887776 888 99999999999999999999999999997
No 60
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.37 E-value=2.7e-05 Score=90.53 Aligned_cols=259 Identities=17% Similarity=0.134 Sum_probs=177.6
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHH
Q 000322 1070 DDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKA 1149 (1670)
Q Consensus 1070 ~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKA 1149 (1670)
++--..|-++. ..|.-.+.|+=++ .=|+|+..|-+++... +.- .|.-|.|=.||..-|.+|.|
T Consensus 26 q~~~~qa~~ls-r~Yv~GlNfLLs~--------Q~dKAvdlF~e~l~~d-~~t-------~e~~ltLGnLfRsRGEvDRA 88 (389)
T COG2956 26 QDKQDQANRLS-RDYVKGLNFLLSN--------QPDKAVDLFLEMLQED-PET-------FEAHLTLGNLFRSRGEVDRA 88 (389)
T ss_pred hhHHHHHhhcc-HHHHhHHHHHhhc--------CcchHHHHHHHHHhcC-chh-------hHHHHHHHHHHHhcchHHHH
Confidence 34445554454 7888776676665 4599999999998866 555 89999999999999999999
Q ss_pred HHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHH
Q 000322 1150 IQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQ 1229 (1670)
Q Consensus 1150 I~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPd 1229 (1670)
|. |-|+-.+ +| +++ .. +
T Consensus 89 IR----iHQ~L~~--sp-dlT---------~~-----------------------------------------------q 105 (389)
T COG2956 89 IR----IHQTLLE--SP-DLT---------FE-----------------------------------------------Q 105 (389)
T ss_pred HH----HHHHHhc--CC-CCc---------hH-----------------------------------------------H
Confidence 99 4443333 44 222 11 2
Q ss_pred HHHHHHHHHHHHHhhhcCCcchhhhh-h-hchhhHhHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCchhH------
Q 000322 1230 RAIKLIEMAVNSVELYSNGESLEKET-N-LRSAHCFAVNHIWCMAV----LNGLECSMNLLEKYIKLYPSCLEL------ 1297 (1670)
Q Consensus 1230 nalAL~smA~dYY~~~~ndesla~~~-~-~kt~~~fKLN~IR~lI~----LEDse~A~~LfdklLk~~P~d~eL------ 1297 (1670)
.++|+.++|-||..+..- +-++.. . .--..+|..+-+|+++. -.++++|++...++++.-|+.-.+
T Consensus 106 r~lAl~qL~~Dym~aGl~--DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfy 183 (389)
T COG2956 106 RLLALQQLGRDYMAAGLL--DRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFY 183 (389)
T ss_pred HHHHHHHHHHHHHHhhhh--hHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHH
Confidence 233344444444432111 011111 0 11124566665666643 339999999999999999887555
Q ss_pred -HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhh
Q 000322 1298 -VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPL 1376 (1670)
Q Consensus 1298 -~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaL 1376 (1670)
.|.-+++...+ .+.|+..+.+|+..+|+.+. +=+++-..++.+|++..|++..+. ++
T Consensus 184 CELAq~~~~~~~-~d~A~~~l~kAlqa~~~cvR----Asi~lG~v~~~~g~y~~AV~~~e~-----------------v~ 241 (389)
T COG2956 184 CELAQQALASSD-VDRARELLKKALQADKKCVR----ASIILGRVELAKGDYQKAVEALER-----------------VL 241 (389)
T ss_pred HHHHHHHhhhhh-HHHHHHHHHHHHhhCcccee----hhhhhhHHHHhccchHHHHHHHHH-----------------HH
Confidence 34445555554 77899999999999999999 888999999999999999887755 11
Q ss_pred cccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCC
Q 000322 1377 VADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINE 1456 (1670)
Q Consensus 1377 rkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~ 1456 (1670)
+-|+++++++. ..|-.||++ .|+.+|...+.-+|...+++-..+.++ |=+.+..+|
T Consensus 242 ---------eQn~~yl~evl-----------~~L~~~Y~~--lg~~~~~~~fL~~~~~~~~g~~~~l~l--~~lie~~~G 297 (389)
T COG2956 242 ---------EQNPEYLSEVL-----------EMLYECYAQ--LGKPAEGLNFLRRAMETNTGADAELML--ADLIELQEG 297 (389)
T ss_pred ---------HhChHHHHHHH-----------HHHHHHHHH--hCCHHHHHHHHHHHHHccCCccHHHHH--HHHHHHhhC
Confidence 22444555555 677789999 999999999999999999987444444 444455555
No 61
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.35 E-value=8.3e-06 Score=94.97 Aligned_cols=308 Identities=17% Similarity=0.192 Sum_probs=204.4
Q ss_pred hhhccccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCC
Q 000322 1004 LKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1083 (1670)
Q Consensus 1004 le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~N 1083 (1670)
+|-.|...++...-|-.||.-..+ .+|+.=|++.|+.-|+=..+-..-+.+..++|+-+.+.+-|.+-+.++|.+
T Consensus 65 ve~dp~~Y~aifrRaT~yLAmGks-----k~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~ 139 (504)
T KOG0624|consen 65 VEGDPNNYQAIFRRATVYLAMGKS-----KAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSN 139 (504)
T ss_pred HcCCchhHHHHHHHHHHHhhhcCC-----ccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCc
Confidence 445566668888888888887665 889999999999999999999999999999999999999999999999966
Q ss_pred HH-------------HHH------HHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhc
Q 000322 1084 YA-------------LWL------MYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSG 1144 (1670)
Q Consensus 1084 Y~-------------Lwl------mYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSG 1144 (1670)
-. -|. -|+..+ .|..||.++-.+.+..+ |--.+..++.++|..-|
T Consensus 140 ~~~~eaqskl~~~~e~~~l~~ql~s~~~~G--------D~~~ai~~i~~llEi~~--------Wda~l~~~Rakc~i~~~ 203 (504)
T KOG0624|consen 140 GLVLEAQSKLALIQEHWVLVQQLKSASGSG--------DCQNAIEMITHLLEIQP--------WDASLRQARAKCYIAEG 203 (504)
T ss_pred chhHHHHHHHHhHHHHHHHHHHHHHHhcCC--------chhhHHHHHHHHHhcCc--------chhHHHHHHHHHHHhcC
Confidence 54 111 122333 67888888877766553 33678889999999999
Q ss_pred CHHHHHHHHHh---hcccc------------cCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhh
Q 000322 1145 NTEKAIQRISR---LLIPA------------TGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLEC 1209 (1670)
Q Consensus 1145 nydKAI~ti~r---LEq~A------------l~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGn~y~q~e~ 1209 (1670)
...+||.-+.. |-+.. .-|+ ...||..|+.||..... -++|+-|.-..+++ .-+.+-
T Consensus 204 e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd--~~~sL~~iRECLKldpd--HK~Cf~~YKklkKv----~K~les 275 (504)
T KOG0624|consen 204 EPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGD--AENSLKEIRECLKLDPD--HKLCFPFYKKLKKV----VKSLES 275 (504)
T ss_pred cHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhh--HHHHHHHHHHHHccCcc--hhhHHHHHHHHHHH----HHHHHH
Confidence 99999985432 22211 1122 24578888888888777 56676652222221 111111
Q ss_pred hhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHH----HHHHHHhcCHHHHHHHHH
Q 000322 1210 EKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNH----IWCMAVLNGLECSMNLLE 1285 (1670)
Q Consensus 1210 ~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~----IR~lI~LEDse~A~~Lfd 1285 (1670)
-+++.. +.+-.-.+ + +|+.-+..+ -......+|. -+|+-.-|.+-+|+.-|.
T Consensus 276 ~e~~ie-----------~~~~t~cl-e---------~ge~vlk~e---p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 276 AEQAIE-----------EKHWTECL-E---------AGEKVLKNE---PEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred HHHHHh-----------hhhHHHHH-H---------HHHHHHhcC---CcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 111111 00000000 1 111111110 0101111222 234333558899999999
Q ss_pred HHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH-----H
Q 000322 1286 KYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR-----W 1358 (1670)
Q Consensus 1286 klLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~-----f 1358 (1670)
.+|...|+|+++ -=+-+||-.- |-++|+.-|+.|++.+|+|.. + .++.+.|.+|-++ |
T Consensus 332 evL~~d~~dv~~l~dRAeA~l~dE-~YD~AI~dye~A~e~n~sn~~----~----------reGle~Akrlkkqs~kRDY 396 (504)
T KOG0624|consen 332 EVLDIDPDDVQVLCDRAEAYLGDE-MYDDAIHDYEKALELNESNTR----A----------REGLERAKRLKKQSGKRDY 396 (504)
T ss_pred HHHhcCchHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhcCcccHH----H----------HHHHHHHHHHHHHhccchH
Confidence 999999999999 5566676444 688999999999999999998 5 3467778887776 7
Q ss_pred HHhhhhccc-ccccchhhhccc
Q 000322 1359 FHSVWKVQY-SQVEISDPLVAD 1379 (1670)
Q Consensus 1359 f~gia~~Q~-~~deALDaLrkg 1379 (1670)
|+-+.--.. ++.+...++|+.
T Consensus 397 YKILGVkRnAsKqEI~KAYRKl 418 (504)
T KOG0624|consen 397 YKILGVKRNASKQEITKAYRKL 418 (504)
T ss_pred HHHhhhcccccHHHHHHHHHHH
Confidence 776655444 777888888765
No 62
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.34 E-value=2.5e-05 Score=96.74 Aligned_cols=291 Identities=15% Similarity=0.095 Sum_probs=214.3
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHHH
Q 000322 1030 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALS 1109 (1670)
Q Consensus 1030 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~ 1109 (1670)
-+..+|+.+|.+.-++.++..=+...++..|..+..-.++...|+.+=+..|.--.=--+|--.-|++.+ +-++.
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~-----~v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD-----EVALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh-----hHHHH
Confidence 3469999999998899999997777889999999988889999999988886433322445555566666 44899
Q ss_pred HHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHH
Q 000322 1110 VLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVC 1189 (1670)
Q Consensus 1110 aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~ 1189 (1670)
+|++-.-..+++. -+.|-++-.||-.+++++.||..+.|=.| .+|+ .+
T Consensus 408 ~Laq~Li~~~~~s-------PesWca~GNcfSLQkdh~~Aik~f~RAiQ-----ldp~--------------------fa 455 (638)
T KOG1126|consen 408 YLAQDLIDTDPNS-------PESWCALGNCFSLQKDHDTAIKCFKRAIQ-----LDPR--------------------FA 455 (638)
T ss_pred HHHHHHHhhCCCC-------cHHHHHhcchhhhhhHHHHHHHHHHHhhc-----cCCc--------------------cc
Confidence 9988766666787 89999999999999999999995555544 3442 22
Q ss_pred HHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHH
Q 000322 1190 CVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIW 1269 (1670)
Q Consensus 1190 ~iYllrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR 1269 (1670)
|.| +|.|.=+-.++.-..|-.. |...+.-+|..=-|.+-+++-|++
T Consensus 456 Yay-----TLlGhE~~~~ee~d~a~~~---fr~Al~~~~rhYnAwYGlG~vy~K-------------------------- 501 (638)
T KOG1126|consen 456 YAY-----TLLGHESIATEEFDKAMKS---FRKALGVDPRHYNAWYGLGTVYLK-------------------------- 501 (638)
T ss_pred hhh-----hhcCChhhhhHHHHhHHHH---HHhhhcCCchhhHHHHhhhhheec--------------------------
Confidence 333 2333333444444445455 555666666666666555433333
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCchhHHHH-HHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCCh
Q 000322 1270 CMAVLNGLECSMNLLEKYIKLYPSCLELVLM-KARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRH 1348 (1670)
Q Consensus 1270 ~lI~LEDse~A~~LfdklLk~~P~d~eL~L~-AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~ 1348 (1670)
.|..+.|.--|.++++.+|.+..|+.+ +.-++..+-.++|+..|++|+.++|+|+- .+++-+......+++
T Consensus 502 ----qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l----~~~~~~~il~~~~~~ 573 (638)
T KOG1126|consen 502 ----QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL----CKYHRASILFSLGRY 573 (638)
T ss_pred ----cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch----hHHHHHHHHHhhcch
Confidence 345667777899999999999999444 44344444489999999999999999999 777888888888899
Q ss_pred HHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHH
Q 000322 1349 DFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLA 1428 (1670)
Q Consensus 1349 d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaA 1428 (1670)
++|...+++ |.++ .| |.=.+|.+||.++=+ .|+.+.|..-
T Consensus 574 ~eal~~LEe---------------Lk~~----vP-------------------~es~v~~llgki~k~--~~~~~~Al~~ 613 (638)
T KOG1126|consen 574 VEALQELEE---------------LKEL----VP-------------------QESSVFALLGKIYKR--LGNTDLALLH 613 (638)
T ss_pred HHHHHHHHH---------------HHHh----Cc-------------------chHHHHHHHHHHHHH--HccchHHHHh
Confidence 888888754 2222 11 222467999999999 9999999999
Q ss_pred HHHHHhhccCC
Q 000322 1429 IDAALKAAASE 1439 (1670)
Q Consensus 1429 YDKALkanp~N 1439 (1670)
|==|+..+|..
T Consensus 614 f~~A~~ldpkg 624 (638)
T KOG1126|consen 614 FSWALDLDPKG 624 (638)
T ss_pred hHHHhcCCCcc
Confidence 99999999954
No 63
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.31 E-value=0.00011 Score=92.50 Aligned_cols=343 Identities=16% Similarity=0.104 Sum_probs=201.1
Q ss_pred ccccccccchhh----hhhhhhcc----ccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Q 000322 989 RQSSFFRSRNGV----LNKLKQVE----LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEAD--PTSEILWITYLL 1058 (1670)
Q Consensus 989 ~~~rYF~~~~d~----i~~le~~~----~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEIN--PtSaeaWy~yl~ 1058 (1670)
+...||....+. ..++|+.. -..+.|=.+|+-+..-+.+ -+|.++++.++..- |.+..++.+-+.
T Consensus 327 d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~-----s~Av~ll~~~~~~~~~ps~~s~~Lmask 401 (799)
T KOG4162|consen 327 DHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSD-----SKAVNLLRESLKKSEQPSDISVLLMASK 401 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccc-----hHHHHHHHhhcccccCCCcchHHHHHHH
Confidence 445555555554 33677764 3349999999988877765 89999999999999 888888888877
Q ss_pred HHHhC-CCCchHHHHHHHHHhh--------CCCCHH-HHHHHHh---cCCCcccchhhHHHHHHHHHHhhhcCCCCcchh
Q 000322 1059 IFYSN-TNSVGKDDMFSYSVKH--------NEGSYA-LWLMYIN---SRTPLNHRLDAYDAALSVLCRCASASDGDEMHA 1125 (1670)
Q Consensus 1059 lY~~~-~~~eea~emlekAVel--------nP~NY~-LwlmYIn---sr~slddrl~~YdkAI~aLe~las~~~~Dr~~~ 1125 (1670)
+++.. +..+++.+|-.||+.+ .|..|- ++..|-. +....+.|+.--.++++.|++.+...+.|
T Consensus 402 lc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d---- 477 (799)
T KOG4162|consen 402 LCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD---- 477 (799)
T ss_pred HHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC----
Confidence 77754 4466788888888873 333333 3333322 23345566656688889998887766444
Q ss_pred hhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccC-CCCc---------------------------------ccchH
Q 000322 1126 SACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATG-SNDR---------------------------------HSLFL 1171 (1670)
Q Consensus 1126 Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~-g~sE---------------------------------~~lSL 1171 (1670)
.++++++.--|..+++++.|.+.+.+.+. +. |.+. +.+--
T Consensus 478 ----p~~if~lalq~A~~R~l~sAl~~~~eaL~--l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~ 551 (799)
T KOG4162|consen 478 ----PLVIFYLALQYAEQRQLTSALDYAREALA--LNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD 551 (799)
T ss_pred ----chHHHHHHHHHHHHHhHHHHHHHHHHHHH--hcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch
Confidence 56777777777777777777776666554 31 1111 12222
Q ss_pred HHHHHhhccCCcchhhHHHHHHHHh-hccchHH-Hhhhh---hhhhhhccCCCCcccchhhHHHHHHHH-----------
Q 000322 1172 SDILTCLTISDKLIFWVCCVYLVIY-RKLPDAV-LQLLE---CEKELFAIDWPPVQLEDDEKQRAIKLI----------- 1235 (1670)
Q Consensus 1172 sKi~~YLt~sDR~~AWL~~iYllrY-rvLPGn~-y~q~e---~~KEAf~I~W~y~~vlkdEPdnalAL~----------- 1235 (1670)
-|+.+=++.+|+|-+=--|+|.+.+ +..++-- -...| +.|.-+.+ ...-.++-+..-..+.
T Consensus 552 ~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~l---a~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 552 GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHL---ALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhccccc---CcccccccchhhHHHHHHHHhhhhhcc
Confidence 2344445566666665556663332 2111100 00011 01111111 0000111111111111
Q ss_pred -------------------------HHHHHHHhhhcCCcchhhhhhhchhhHhHHHH----H--HHHHHhcCHHHHHHHH
Q 000322 1236 -------------------------EMAVNSVELYSNGESLEKETNLRSAHCFAVNH----I--WCMAVLNGLECSMNLL 1284 (1670)
Q Consensus 1236 -------------------------smA~dYY~~~~ndesla~~~~~kt~~~fKLN~----I--R~lI~LEDse~A~~Lf 1284 (1670)
.+|++++..+-+++..-.- =.++..-.++.+ + +.+...+..++|.+.|
T Consensus 629 se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~C-L~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 629 SELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSC-LLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred cccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHH-HHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 2334444442232221000 001112223322 2 2223356899999999
Q ss_pred HHHHHhCCCchhH--HHHHHHHhhcccCCccH--HHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Q 000322 1285 EKYIKLYPSCLEL--VLMKARLQKHDFGDLSS--VGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELM 1355 (1670)
Q Consensus 1285 dklLk~~P~d~eL--~L~AAyL~~K~m~~~A~--svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc 1355 (1670)
..++...|.++.. .|...+++... +.-+. ..+-.|+.++|.|.. +|++|.......|+.++|..-.
T Consensus 708 ~~Al~ldP~hv~s~~Ala~~lle~G~-~~la~~~~~L~dalr~dp~n~e----aW~~LG~v~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 708 LVALALDPDHVPSMTALAELLLELGS-PRLAEKRSLLSDALRLDPLNHE----AWYYLGEVFKKLGDSKQAAECF 777 (799)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCC-cchHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHccchHHHHHHH
Confidence 9999999999999 44444444443 44333 599999999999999 9999999999999999776533
No 64
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.30 E-value=6.3e-06 Score=81.51 Aligned_cols=106 Identities=13% Similarity=0.148 Sum_probs=94.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHH
Q 000322 1037 SLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLC 1112 (1670)
Q Consensus 1037 dLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe 1112 (1670)
.+|.++++.+|++..+.+.++..|...+...++.++|+++++.+|.+.. ++..|...+ .|+.|+.+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~--------~~~~A~~~~~ 75 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLK--------EYEEAIDAYA 75 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999998866 667777777 8999999999
Q ss_pred HhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000322 1113 RCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1113 ~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1158 (1670)
+..+.. ++. .++++.+..+|...|++++|+..+.+...
T Consensus 76 ~~~~~~-p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 76 LAAALD-PDD-------PRPYFHAAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHhcC-CCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888877 555 89999999999999999999998877776
No 65
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.26 E-value=7.7e-06 Score=89.02 Aligned_cols=107 Identities=13% Similarity=0.173 Sum_probs=94.1
Q ss_pred hhhhhccccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHhCCC--CchHHHHHHHHHh
Q 000322 1002 NKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLI-FYSNTN--SVGKDDMFSYSVK 1078 (1670)
Q Consensus 1002 ~~le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~l-Y~~~~~--~eea~emlekAVe 1078 (1670)
..|+..|.+.+.|+.++.-++..+ +++.|+..|.+|++++|+++.+|+.|+.. |...+. ..++.++|++|++
T Consensus 64 ~~L~~~P~~~~~w~~Lg~~~~~~g-----~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~ 138 (198)
T PRK10370 64 DKIRANPQNSEQWALLGEYYLWRN-----DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALA 138 (198)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 467778999999999999998775 46999999999999999999999999985 566665 4789999999999
Q ss_pred hCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCC
Q 000322 1079 HNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD 1121 (1670)
Q Consensus 1079 lnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~D 1121 (1670)
.+|++-. |+..|...+ .|++|+..|+++....+++
T Consensus 139 ~dP~~~~al~~LA~~~~~~g--------~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 139 LDANEVTALMLLASDAFMQA--------DYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred hCCCChhHHHHHHHHHHHcC--------CHHHHHHHHHHHHhhCCCC
Confidence 9999877 788888888 9999999999998888555
No 66
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.20 E-value=1e-05 Score=83.63 Aligned_cols=103 Identities=16% Similarity=0.149 Sum_probs=75.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHH
Q 000322 1037 SLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLC 1112 (1670)
Q Consensus 1037 dLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe 1112 (1670)
.+|.+||+++|++ |+.++..+.+.+.-.++.++|.+|+.++|.++. ++.++...+ .|++|+..|.
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g--------~~~~A~~~y~ 82 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLK--------EYTTAINFYG 82 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh--------hHHHHHHHHH
Confidence 5677888888775 556677777777777777888888888887777 555566666 7788888887
Q ss_pred HhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000322 1113 RCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1113 ~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1158 (1670)
+..+..| +. -+.++.+..++...|+++.||..+.+...
T Consensus 83 ~Al~l~p-~~-------~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 83 HALMLDA-SH-------PEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHhcCC-CC-------cHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777763 33 67788888888888888888887766554
No 67
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.20 E-value=3.5e-05 Score=83.42 Aligned_cols=145 Identities=13% Similarity=0.070 Sum_probs=108.7
Q ss_pred cccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCH
Q 000322 1008 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSE---ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY 1084 (1670)
Q Consensus 1008 ~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSa---eaWy~yl~lY~~~~~~eea~emlekAVelnP~NY 1084 (1670)
+...+.++.+|..++..+ +++.|...|.++++.+|+++ .+|+.++.+|...++..++.+.|+++++..|++.
T Consensus 30 ~~~~~~~~~~g~~~~~~~-----~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 104 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSG-----DYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP 104 (235)
T ss_pred cCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 444588999999888764 46999999999999999987 6889999999999999999999999999999766
Q ss_pred H-------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhh----------hHHHHHHHHHHHHHhcCHH
Q 000322 1085 A-------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASAC----------ILDLFLQMLQCFCMSGNTE 1147 (1670)
Q Consensus 1085 ~-------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~----------iLDILL~LvqLY~qSGnyd 1147 (1670)
. ++..|.+.........-.+++|++.|.+....+ |+....-.. +....+.+..+|...|+++
T Consensus 105 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~ 183 (235)
T TIGR03302 105 DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYV 183 (235)
T ss_pred chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChH
Confidence 4 344454431111112236899999999999988 443111100 0112346788999999999
Q ss_pred HHHHHHHhhcc
Q 000322 1148 KAIQRISRLLI 1158 (1670)
Q Consensus 1148 KAI~ti~rLEq 1158 (1670)
+|+..+.++..
T Consensus 184 ~A~~~~~~al~ 194 (235)
T TIGR03302 184 AAINRFETVVE 194 (235)
T ss_pred HHHHHHHHHHH
Confidence 99998877764
No 68
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.10 E-value=9.1e-05 Score=96.00 Aligned_cols=269 Identities=12% Similarity=0.055 Sum_probs=158.6
Q ss_pred hhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHH
Q 000322 1078 KHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRI 1153 (1670)
Q Consensus 1078 elnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti 1153 (1670)
-++|.|+. |..+|...+ .|++|+.+++.+.+.+ |+. +.+++++.-||.+.+++++|.-+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~--------~~deai~i~~~~l~~~-P~~-------i~~yy~~G~l~~q~~~~~~~~lv- 87 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSEN--------LTDEAKDICEEHLKEH-KKS-------ISALYISGILSLSRRPLNDSNLL- 87 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHhC-Ccc-------eehHHHHHHHHHhhcchhhhhhh-
Confidence 45666666 556676777 8899999998888888 677 88888888899999999999775
Q ss_pred HhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHH----H--HHHhhccchHHHhhhhhhhhhhccCCCCcccchhh
Q 000322 1154 SRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCV----Y--LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDE 1227 (1670)
Q Consensus 1154 ~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~i----Y--llrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdE 1227 (1670)
++.. +-..+.+. .+.. ++|.. + .-.++. +|..|...|..++++.+ |.++++-+
T Consensus 88 -~~l~--~~~~~~~~----~~ve----------~~~~~i~~~~~~k~Al~~-LA~~Ydk~g~~~ka~~~---yer~L~~D 146 (906)
T PRK14720 88 -NLID--SFSQNLKW----AIVE----------HICDKILLYGENKLALRT-LAEAYAKLNENKKLKGV---WERLVKAD 146 (906)
T ss_pred -hhhh--hcccccch----hHHH----------HHHHHHHhhhhhhHHHHH-HHHHHHHcCChHHHHHH---HHHHHhcC
Confidence 4443 11111100 1111 22211 1 112333 68889999999999999 99999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhc
Q 000322 1228 KQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKH 1307 (1670)
Q Consensus 1228 PdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K 1307 (1670)
|+|+.+|=.+| .+|+. . +.++|+.++.++++. |+..+
T Consensus 147 ~~n~~aLNn~A-Y~~ae-----------------------------~-dL~KA~~m~~KAV~~------------~i~~k 183 (906)
T PRK14720 147 RDNPEIVKKLA-TSYEE-----------------------------E-DKEKAITYLKKAIYR------------FIKKK 183 (906)
T ss_pred cccHHHHHHHH-HHHHH-----------------------------h-hHHHHHHHHHHHHHH------------HHhhh
Confidence 99999998875 34432 0 345555555555554 44444
Q ss_pred ccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCC
Q 000322 1308 DFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPES 1387 (1670)
Q Consensus 1308 ~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es 1387 (1670)
+ ..+...+|++.+..+|++.. .+.++++.....-....+..++.+-|..+.. ....++++++|+.....-+
T Consensus 184 q-~~~~~e~W~k~~~~~~~d~d----~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~-~~~~~~~i~iLK~iL~~~~--- 254 (906)
T PRK14720 184 Q-YVGIEEIWSKLVHYNSDDFD----FFLRIERKVLGHREFTRLVGLLEDLYEPYKA-LEDWDEVIYILKKILEHDN--- 254 (906)
T ss_pred c-chHHHHHHHHHHhcCcccch----HHHHHHHHHHhhhccchhHHHHHHHHHHHhh-hhhhhHHHHHHHHHHhcCC---
Confidence 3 44555666666666666666 5555555555444444555544442222111 0144555555554433311
Q ss_pred CCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhcc----CCcHHHHHHHHHHHHhcC
Q 000322 1388 TSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAA----SEHFKHCVREHAMLLLIN 1455 (1670)
Q Consensus 1388 ~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp----~N~~i~cLNNYAYFLS~e 1455 (1670)
.+++ +.-+++.+. .+++.. ..-|+.+|+... ...|..|+.+|--++++.
T Consensus 255 -----~n~~-----------a~~~l~~~y--~~kY~~-~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i~f~ 307 (906)
T PRK14720 255 -----KNNK-----------AREELIRFY--KEKYKD-HSLLEDYLKMSDIGNNRKPVKDCIADFEKNIVFD 307 (906)
T ss_pred -----cchh-----------hHHHHHHHH--HHHccC-cchHHHHHHHhccccCCccHHHHHHHHHHHeeec
Confidence 2334 444554444 444444 555666665433 123566666666666553
No 69
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.05 E-value=5.3e-05 Score=82.00 Aligned_cols=128 Identities=14% Similarity=0.159 Sum_probs=106.0
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHhC--------CCCchHHHHHHHHHhhC
Q 000322 1012 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEI---LWITYLLIFYSN--------TNSVGKDDMFSYSVKHN 1080 (1670)
Q Consensus 1012 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSae---aWy~yl~lY~~~--------~~~eea~emlekAVeln 1080 (1670)
+.|+.+|.-++.. ++++.|+..|.++++.+|+++. +|+.++.+|+.. +....+.+.|+++++..
T Consensus 71 ~a~~~la~~~~~~-----~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 145 (235)
T TIGR03302 71 QAQLDLAYAYYKS-----GDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY 145 (235)
T ss_pred HHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC
Confidence 6788888877776 4579999999999999998887 688888888875 45667899999999999
Q ss_pred CCCHH---------------------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHH
Q 000322 1081 EGSYA---------------------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQC 1139 (1670)
Q Consensus 1081 P~NY~---------------------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqL 1139 (1670)
|++-. ++.+|+..+ .|.+|+..|.+....+ |+ +....+.++.+..+
T Consensus 146 p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g--------~~~~A~~~~~~al~~~-p~----~~~~~~a~~~l~~~ 212 (235)
T TIGR03302 146 PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRG--------AYVAAINRFETVVENY-PD----TPATEEALARLVEA 212 (235)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHHC-CC----CcchHHHHHHHHHH
Confidence 99843 345667777 8999999999998887 33 12347899999999
Q ss_pred HHHhcCHHHHHHHHHhhc
Q 000322 1140 FCMSGNTEKAIQRISRLL 1157 (1670)
Q Consensus 1140 Y~qSGnydKAI~ti~rLE 1157 (1670)
|...|++++|+..+..|.
T Consensus 213 ~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 213 YLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 999999999999777665
No 70
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.03 E-value=0.00032 Score=89.94 Aligned_cols=124 Identities=17% Similarity=0.146 Sum_probs=96.2
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HH
Q 000322 1012 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LW 1087 (1670)
Q Consensus 1012 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----Lw 1087 (1670)
..|+..-.-||+ .++.-.|..-|++||.++|.+-.+|.-+...|...|..+.+...|-||..++|.+.. .+
T Consensus 563 ~nW~~rG~yyLe-----a~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A 637 (1238)
T KOG1127|consen 563 ENWVQRGPYYLE-----AHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEA 637 (1238)
T ss_pred hhhhhccccccC-----ccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHH
Confidence 556663333333 355689999999999999999999999999999999999999999999999998766 34
Q ss_pred HHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhh--hHHHHHHHHHHHHHhcCHHHHHH
Q 000322 1088 LMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASAC--ILDLFLQMLQCFCMSGNTEKAIQ 1151 (1670)
Q Consensus 1088 lmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~--iLDILL~LvqLY~qSGnydKAI~ 1151 (1670)
-|--..+ .|.+|+.+|....... .+ +++++ +-+.++.+...+..+|=+.||..
T Consensus 638 ~~ecd~G--------kYkeald~l~~ii~~~-s~--e~~~q~gLaE~~ir~akd~~~~gf~~kavd 692 (1238)
T KOG1127|consen 638 VMECDNG--------KYKEALDALGLIIYAF-SL--ERTGQNGLAESVIRDAKDSAITGFQKKAVD 692 (1238)
T ss_pred HHHHHhh--------hHHHHHHHHHHHHHHH-HH--HHHhhhhHHHHHHHHHHHHHHHHHhhhhhH
Confidence 4433444 8999999997766554 22 35554 36788888888888888777766
No 71
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.03 E-value=1.4e-05 Score=71.29 Aligned_cols=67 Identities=15% Similarity=0.245 Sum_probs=61.9
Q ss_pred cHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHhhCC
Q 000322 1010 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNT-NSVGKDDMFSYSVKHNE 1081 (1670)
Q Consensus 1010 d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~-~~eea~emlekAVelnP 1081 (1670)
+.+.|..+|..++.. ++|+.|+..|.+||++||+++.+|+.++.+|..++ ...++..+|++|++++|
T Consensus 2 ~a~~~~~~g~~~~~~-----~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQ-----GDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHT-----THHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 457899999988887 56799999999999999999999999999999999 68899999999999998
No 72
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.00 E-value=0.0047 Score=70.59 Aligned_cols=321 Identities=12% Similarity=-0.055 Sum_probs=187.5
Q ss_pred cccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCH
Q 000322 1008 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADP---TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY 1084 (1670)
Q Consensus 1008 ~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINP---tSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY 1084 (1670)
|.....|.-+|..+..... .+.|...+.++++.+| +..+.++..+.++...+..+++.++++++++.+|++.
T Consensus 3 p~~~~a~~~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~ 77 (355)
T cd05804 3 PDFALGHAAAALLLLLGGE-----RPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL 77 (355)
T ss_pred CccHHHHHHHHHHHHhcCC-----cchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence 4555677777766665543 3444556666666666 5577888888888889988999999999999999998
Q ss_pred HHHH---HHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhccccc
Q 000322 1085 ALWL---MYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPAT 1161 (1670)
Q Consensus 1085 ~Lwl---mYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al 1161 (1670)
..+. .|..... +.+ ..+.+..++......+ ++. ...+..+..++...|+++.|+..+.+...
T Consensus 78 ~a~~~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~-~~~-------~~~~~~~a~~~~~~G~~~~A~~~~~~al~--- 142 (355)
T cd05804 78 LALKLHLGAFGLGD-FSG---MRDHVARVLPLWAPEN-PDY-------WYLLGMLAFGLEEAGQYDRAEEAARRALE--- 142 (355)
T ss_pred HHHHHhHHHHHhcc-ccc---CchhHHHHHhccCcCC-CCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---
Confidence 7554 3433332 123 3355555554433333 443 56667788899999999999998777765
Q ss_pred CCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHH
Q 000322 1162 GSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNS 1241 (1670)
Q Consensus 1162 ~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~smA~dY 1241 (1670)
..|. + .| ...+++.+|...|..+++... +.+.++..|......
T Consensus 143 --~~p~--------------~---~~--------~~~~la~i~~~~g~~~eA~~~---l~~~l~~~~~~~~~~------- 185 (355)
T cd05804 143 --LNPD--------------D---AW--------AVHAVAHVLEMQGRFKEGIAF---MESWRDTWDCSSMLR------- 185 (355)
T ss_pred --hCCC--------------C---cH--------HHHHHHHHHHHcCCHHHHHHH---HHhhhhccCCCcchh-------
Confidence 2331 1 11 123356667777777777665 444444333210000
Q ss_pred HhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH-HH-----HHHHHhhcccCCccHH
Q 000322 1242 VELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VL-----MKARLQKHDFGDLSSV 1315 (1670)
Q Consensus 1242 Y~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL-~L-----~AAyL~~K~m~~~A~s 1315 (1670)
...=..+.+++...++.+.|+.+|++++...|....+ .+ ...++...+ ......
T Consensus 186 -------------------~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~~~ 245 (355)
T cd05804 186 -------------------GHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAG-HVDVGD 245 (355)
T ss_pred -------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcC-CCChHH
Confidence 0001122455566889999999999998777743333 22 222233332 233334
Q ss_pred HHHHHHHhCCCC-C-chHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCc
Q 000322 1316 GFEEALIKWPKG-V-PGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDP 1393 (1670)
Q Consensus 1316 vle~AL~~~PkN-a-~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vS 1393 (1670)
-|+.+....+.. . +.+...+.-.+...+..++.+.|..+..+--. .+.-. .... ....
T Consensus 246 ~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~-~~~~~-------~~~~--~~~~---------- 305 (355)
T cd05804 246 RWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG-RASSA-------DDNK--QPAR---------- 305 (355)
T ss_pred HHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH-HHhcc-------Cchh--hhHH----------
Confidence 454444332111 0 33333444567778888899999888866111 00000 0000 0000
Q ss_pred ccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhc
Q 000322 1394 EFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAA 1436 (1670)
Q Consensus 1394 Dfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkan 1436 (1670)
.+ .+-.+...++|. +|+..+|......||...
T Consensus 306 --------~~-~~~~l~A~~~~~--~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 306 --------DV-GLPLAEALYAFA--EGNYATALELLGPVRDDL 337 (355)
T ss_pred --------hh-hHHHHHHHHHHH--cCCHHHHHHHHHHHHHHH
Confidence 00 011445556667 999999999999999765
No 73
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.00 E-value=0.0035 Score=74.99 Aligned_cols=312 Identities=15% Similarity=0.076 Sum_probs=220.3
Q ss_pred hccccHHHHHH-----HHHHHhcccc--cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHh
Q 000322 1006 QVELSNEQCVE-----MALLILNQDA--NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVK 1078 (1670)
Q Consensus 1006 ~~~~d~qlWLe-----lAl~~Lnq~~--n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVe 1078 (1670)
..|.....|.. -|.+.++..- -.-|+|.+|--++.++=+.-+.-..++..=+..=-++++...++.++.+|.+
T Consensus 67 ~~~~~~~~w~~~rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae 146 (400)
T COG3071 67 RTPAHTRGWFSRRKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAE 146 (400)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 33455566665 3555555543 2358899999999999888888777777777777788888889999999999
Q ss_pred hCCCCHH-----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHH
Q 000322 1079 HNEGSYA-----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRI 1153 (1670)
Q Consensus 1079 lnP~NY~-----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti 1153 (1670)
..++.-. ....-++++ .|+.|+.-+.++.+.. |-. .+++..++++|..+|+|+..+..+
T Consensus 147 ~~~~~~l~v~ltrarlll~~~--------d~~aA~~~v~~ll~~~-pr~-------~~vlrLa~r~y~~~g~~~~ll~~l 210 (400)
T COG3071 147 LAGDDTLAVELTRARLLLNRR--------DYPAARENVDQLLEMT-PRH-------PEVLRLALRAYIRLGAWQALLAIL 210 (400)
T ss_pred cCCCchHHHHHHHHHHHHhCC--------CchhHHHHHHHHHHhC-cCC-------hHHHHHHHHHHHHhccHHHHHHHH
Confidence 9765554 556777888 8899999999988887 444 799999999999999999999977
Q ss_pred HhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHH
Q 000322 1154 SRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIK 1233 (1670)
Q Consensus 1154 ~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalA 1233 (1670)
..|....+-+++| +..+... .|..+ +++.... .-+..
T Consensus 211 ~~L~ka~~l~~~e-------~~~le~~--------------a~~gl----L~q~~~~------------------~~~~g 247 (400)
T COG3071 211 PKLRKAGLLSDEE-------AARLEQQ--------------AWEGL----LQQARDD------------------NGSEG 247 (400)
T ss_pred HHHHHccCCChHH-------HHHHHHH--------------HHHHH----HHHHhcc------------------ccchH
Confidence 7777522222221 1111110 11111 1111000 00001
Q ss_pred HHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhcccCCcc
Q 000322 1234 LIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLS 1313 (1670)
Q Consensus 1234 L~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m~~~A 1313 (1670)
| .+..+. +.. ..|.+....+.++..+|.+++.+.|..+....++..-+.- |.....++.-.+ +.+=
T Consensus 248 L----~~~W~~------~pr--~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~l~~~d-~~~l 313 (400)
T COG3071 248 L----KTWWKN------QPR--KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIPRLRPGD-PEPL 313 (400)
T ss_pred H----HHHHHh------ccH--HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHhhcCCCC-chHH
Confidence 1 011111 000 3466677778888888999999999999999999887766 655555666665 7777
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCc
Q 000322 1314 SVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDP 1393 (1670)
Q Consensus 1314 ~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vS 1393 (1670)
+...++.+...|+++. +|.-|-+.++.++.|.+|....+. ++....+ .+
T Consensus 314 ~k~~e~~l~~h~~~p~----L~~tLG~L~~k~~~w~kA~~~lea-----------------Al~~~~s----------~~ 362 (400)
T COG3071 314 IKAAEKWLKQHPEDPL----LLSTLGRLALKNKLWGKASEALEA-----------------ALKLRPS----------AS 362 (400)
T ss_pred HHHHHHHHHhCCCChh----HHHHHHHHHHHhhHHHHHHHHHHH-----------------HHhcCCC----------hh
Confidence 8999999999999995 999999999999999999887743 2222211 12
Q ss_pred ccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhh
Q 000322 1394 EFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKA 1435 (1670)
Q Consensus 1394 Dfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALka 1435 (1670)
| | .++++.+-+ .|...+|...++.+|-.
T Consensus 363 ~-~-----------~~la~~~~~--~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 363 D-Y-----------AELADALDQ--LGEPEEAEQVRREALLL 390 (400)
T ss_pred h-H-----------HHHHHHHHH--cCChHHHHHHHHHHHHH
Confidence 3 4 889999999 99999999999999943
No 74
>PLN02789 farnesyltranstransferase
Probab=98.00 E-value=0.00021 Score=83.63 Aligned_cols=115 Identities=17% Similarity=0.197 Sum_probs=96.9
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHhhCCCCHHHHH----HHHhcCCCcccchhhH
Q 000322 1030 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNS-VGKDDMFSYSVKHNEGSYALWL----MYINSRTPLNHRLDAY 1104 (1670)
Q Consensus 1030 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~-eea~emlekAVelnP~NY~Lwl----mYInsr~slddrl~~Y 1104 (1670)
+.++.|+.++..+|++||.+..+|.....++...+.. +++.+.+.+|++.+|.||.+|. ++.+.+ . ..+
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~----~--~~~ 124 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLG----P--DAA 124 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcC----c--hhh
Confidence 3458999999999999999999999999998888743 6789999999999999999875 333332 1 135
Q ss_pred HHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000322 1105 DAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1105 dkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1158 (1670)
++++.++..+.+.+ +.. -.+|..+.-++...|+|++||+..+++..
T Consensus 125 ~~el~~~~kal~~d-pkN-------y~AW~~R~w~l~~l~~~~eeL~~~~~~I~ 170 (320)
T PLN02789 125 NKELEFTRKILSLD-AKN-------YHAWSHRQWVLRTLGGWEDELEYCHQLLE 170 (320)
T ss_pred HHHHHHHHHHHHhC-ccc-------HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 78899999999888 555 88999999999999999999998888875
No 75
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.99 E-value=0.00048 Score=85.64 Aligned_cols=304 Identities=18% Similarity=0.204 Sum_probs=200.9
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHH----HHHHhcCCCcccchh
Q 000322 1027 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALW----LMYINSRTPLNHRLD 1102 (1670)
Q Consensus 1027 n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~Lw----lmYInsr~slddrl~ 1102 (1670)
++.|+-+.|++.-.++|.+|+.+..+|..|+.+|..-++-.++..+|..|....|+|-.+| ++=+..|
T Consensus 52 ~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmR-------- 123 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMR-------- 123 (700)
T ss_pred hcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH--------
Confidence 4678889999999999999999999999999999888888899999999999999999844 4444455
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccc-------------
Q 000322 1103 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSL------------- 1169 (1670)
Q Consensus 1103 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~l------------- 1169 (1670)
.|+.....=-++.... +.. ..-|+-.+--+...|+|..|+..++..+++...+.+...+
T Consensus 124 d~~~~~~tr~~LLql~-~~~-------ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~ 195 (700)
T KOG1156|consen 124 DYEGYLETRNQLLQLR-PSQ-------RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQIL 195 (700)
T ss_pred hhhhHHHHHHHHHHhh-hhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH
Confidence 5554444433334444 333 4556666666777899999999999998866533322111
Q ss_pred ----hHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHH--------
Q 000322 1170 ----FLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEM-------- 1237 (1670)
Q Consensus 1170 ----SLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~sm-------- 1237 (1670)
++.+.+..|....++++ -.+.|....+++++..+..+||..+ |..++.-+|||......+
T Consensus 196 ~E~g~~q~ale~L~~~e~~i~-----Dkla~~e~ka~l~~kl~~lEeA~~~---y~~Ll~rnPdn~~Yy~~l~~~lgk~~ 267 (700)
T KOG1156|consen 196 IEAGSLQKALEHLLDNEKQIV-----DKLAFEETKADLLMKLGQLEEAVKV---YRRLLERNPDNLDYYEGLEKALGKIK 267 (700)
T ss_pred HHcccHHHHHHHHHhhhhHHH-----HHHHHhhhHHHHHHHHhhHHhHHHH---HHHHHhhCchhHHHHHHHHHHHHHHh
Confidence 12223333333333222 0455666778888888888888777 777777777775432211
Q ss_pred ----HH-HHHhh-----------------hcCCcchhhhh----------------------hhc---------------
Q 000322 1238 ----AV-NSVEL-----------------YSNGESLEKET----------------------NLR--------------- 1258 (1670)
Q Consensus 1238 ----A~-dYY~~-----------------~~ndesla~~~----------------------~~k--------------- 1258 (1670)
++ .-|.. +.+++++.... ++.
T Consensus 268 d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~ 347 (700)
T KOG1156|consen 268 DMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQ 347 (700)
T ss_pred hhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHH
Confidence 01 01110 01111111100 000
Q ss_pred --------------hhhHhHHHHHHHH-------HHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhccc-CCccHHH
Q 000322 1259 --------------SAHCFAVNHIWCM-------AVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDF-GDLSSVG 1316 (1670)
Q Consensus 1259 --------------t~~~fKLN~IR~l-------I~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m-~~~A~sv 1316 (1670)
-.++-|...+.++ -..++.+.|..+.+.++..+|+=+++-+.-++|.+..+ .+.|...
T Consensus 348 ~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~ 427 (700)
T KOG1156|consen 348 HSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAW 427 (700)
T ss_pred hhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHH
Confidence 0011122222221 12559999999999999999999999888888877664 6678888
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000322 1317 FEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRW 1358 (1670)
Q Consensus 1317 le~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~f 1358 (1670)
+++|-+.+--+.- +=--++.+.++.+..++|..+|..|
T Consensus 428 l~ea~elD~aDR~----INsKcAKYmLrAn~i~eA~~~~skF 465 (700)
T KOG1156|consen 428 LDEAQELDTADRA----INSKCAKYMLRANEIEEAEEVLSKF 465 (700)
T ss_pred HHHHHhccchhHH----HHHHHHHHHHHccccHHHHHHHHHh
Confidence 8999988866665 2113567899999999999999773
No 76
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.0019 Score=79.91 Aligned_cols=314 Identities=13% Similarity=0.147 Sum_probs=188.0
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCC-CHH----HHHHHHhcCCCcccch
Q 000322 1027 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG-SYA----LWLMYINSRTPLNHRL 1101 (1670)
Q Consensus 1027 n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~-NY~----LwlmYInsr~slddrl 1101 (1670)
...|+|++||++|+|.++.+-.+-+.-.....+-. ..-..++ ..++|...|. +|. .+..||..+
T Consensus 121 Yrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~--~a~l~~~--~~q~v~~v~e~syel~yN~Ac~~i~~g------- 189 (652)
T KOG2376|consen 121 YRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV--AAALQVQ--LLQSVPEVPEDSYELLYNTACILIENG------- 189 (652)
T ss_pred HHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH--HHhhhHH--HHHhccCCCcchHHHHHHHHHHHHhcc-------
Confidence 34588999999999999999998887776544421 1111222 6677777776 555 788999999
Q ss_pred hhHHHHHHHHHHh----hhc-CCCCc--chhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccc--------------
Q 000322 1102 DAYDAALSVLCRC----ASA-SDGDE--MHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPA-------------- 1160 (1670)
Q Consensus 1102 ~~YdkAI~aLe~l----as~-~~~Dr--~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~A-------------- 1160 (1670)
.|+.|++.|+.. -+. .+.|. ++-=..|-=|-+||+..+.+.|+.++|.+.+..+....
T Consensus 190 -ky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNL 268 (652)
T KOG2376|consen 190 -KYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNL 268 (652)
T ss_pred -cHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcch
Confidence 999999999776 111 11222 11223444466888889999999999999777776511
Q ss_pred --cCCCC---cccchHHHHHHhhccCCcchhhHHHHH-HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHH
Q 000322 1161 --TGSND---RHSLFLSDILTCLTISDKLIFWVCCVY-LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKL 1234 (1670)
Q Consensus 1161 --l~g~s---E~~lSLsKi~~YLt~sDR~~AWL~~iY-llrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL 1234 (1670)
+.+.. ++++..++=..+.+..+.+.+.|...+ ..+|+. .+.+-|-.|+......+ ...+-.+-|+-.+-.
T Consensus 269 va~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N-~~lL~l~tnk~~q~r~~---~a~lp~~~p~~~~~~ 344 (652)
T KOG2376|consen 269 VALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRN-NALLALFTNKMDQVREL---SASLPGMSPESLFPI 344 (652)
T ss_pred hhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhHHHHHHH---HHhCCccCchHHHHH
Confidence 11111 112222344455666666666777777 444444 34444445543333332 222222222222211
Q ss_pred HHHHHHHHhh--hcCCcchhhhhh---hchhhHhHHHHHHHHHHhcCHHHHHHHHH--------HHHHhCCCchhH-HHH
Q 000322 1235 IEMAVNSVEL--YSNGESLEKETN---LRSAHCFAVNHIWCMAVLNGLECSMNLLE--------KYIKLYPSCLEL-VLM 1300 (1670)
Q Consensus 1235 ~smA~dYY~~--~~ndesla~~~~---~kt~~~fKLN~IR~lI~LEDse~A~~Lfd--------klLk~~P~d~eL-~L~ 1300 (1670)
+-.+.-.+.. ..+-..+-.... +.-....++-.++..|..++++.|+..+. .+.+.--.=.-+ .+.
T Consensus 345 ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv 424 (652)
T KOG2376|consen 345 LLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIV 424 (652)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHH
Confidence 1110000000 000000000000 11122344454666666779999998888 555544333344 666
Q ss_pred HHHHhhcccCCccHHHHHHHHHhCCCCCc---hHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000322 1301 KARLQKHDFGDLSSVGFEEALIKWPKGVP---GIQCIWNQYVEYALQNGRHDFAAELMDR 1357 (1670)
Q Consensus 1301 AAyL~~K~m~~~A~svle~AL~~~PkNa~---g~~caW~QLIq~al~~en~d~Ai~Lc~~ 1357 (1670)
+.|...++ ...|..+|++|+.-|-+... ...|.|-+++...++.|+..+|..+.++
T Consensus 425 ~l~~~~~~-~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~lee 483 (652)
T KOG2376|consen 425 ALYYKIKD-NDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEE 483 (652)
T ss_pred HHHHhccC-CccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHH
Confidence 77766665 77788999999998887766 7889999999999999999999999877
No 77
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.97 E-value=7.8e-05 Score=73.82 Aligned_cols=104 Identities=15% Similarity=0.101 Sum_probs=88.7
Q ss_pred hhhccccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCC
Q 000322 1004 LKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1083 (1670)
Q Consensus 1004 le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~N 1083 (1670)
|+..|.+...-+.+|..++.. |+++.|..+|..+++++|+++.+|+.++.+|...+....+..+|++|++.+|.+
T Consensus 10 l~~~p~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 10 LGLDSEQLEQIYALAYNLYQQ-----GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred HcCChhhHHHHHHHHHHHHHc-----ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 344556666677777777766 457999999999999999999999999999999998889999999999999998
Q ss_pred HH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCC
Q 000322 1084 YA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD 1121 (1670)
Q Consensus 1084 Y~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~D 1121 (1670)
.. ++..|...+ .+++|+..|....+.. |+
T Consensus 85 ~~~~~~la~~~~~~g--------~~~~A~~~~~~al~~~-p~ 117 (135)
T TIGR02552 85 PRPYFHAAECLLALG--------EPESALKALDLAIEIC-GE 117 (135)
T ss_pred hHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhc-cc
Confidence 66 677788888 8999999998888877 44
No 78
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.95 E-value=0.00035 Score=86.60 Aligned_cols=362 Identities=17% Similarity=0.152 Sum_probs=198.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhh
Q 000322 1130 LDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLEC 1209 (1670)
Q Consensus 1130 LDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGn~y~q~e~ 1209 (1670)
.|++|+.++++..+|++++|+..|...+. .+-|+ +.+..+-+.+|+..|+
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~--------------------~I~Dk----------~~~~E~rA~ll~kLg~ 53 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEK--------------------QILDK----------LAVLEKRAELLLKLGR 53 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhh--------------------hCCCH----------HHHHHHHHHHHHHcCC
Confidence 58999999999999999999996644332 12343 3345567888999999
Q ss_pred hhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 000322 1210 EKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIK 1289 (1670)
Q Consensus 1210 ~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk 1289 (1670)
.+||..+ |..+++.+|+|....-.+. ...-. .. -+.-++.+...++|+.+-+
T Consensus 54 ~~eA~~~---y~~Li~rNPdn~~Yy~~L~-~~~g~---------------------~~---~~~~~~~~~~~~~y~~l~~ 105 (517)
T PF12569_consen 54 KEEAEKI---YRELIDRNPDNYDYYRGLE-EALGL---------------------QL---QLSDEDVEKLLELYDELAE 105 (517)
T ss_pred HHHHHHH---HHHHHHHCCCcHHHHHHHH-HHHhh---------------------hc---ccccccHHHHHHHHHHHHH
Confidence 9999999 9999999999987665431 11100 00 0011133444445555555
Q ss_pred hCCCchhH-H-------------HHHHHHhh--cccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChH----
Q 000322 1290 LYPSCLEL-V-------------LMKARLQK--HDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHD---- 1349 (1670)
Q Consensus 1290 ~~P~d~eL-~-------------L~AAyL~~--K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d---- 1349 (1670)
.+|.+.-+ . ++..||.. ++ +..+..+-.+.|-.+|.....+..+-..|+...-..+.+.
T Consensus 106 ~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K-gvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~ 184 (517)
T PF12569_consen 106 KYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK-GVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDD 184 (517)
T ss_pred hCccccchhHhhcccCCHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccc
Confidence 55443333 1 12222211 11 2222222122222233333322222222222111111110
Q ss_pred -----HHHHHHHHHHHhhhhccc-ccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHH
Q 000322 1350 -----FAAELMDRWFHSVWKVQY-SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWN 1423 (1670)
Q Consensus 1350 -----~Ai~Lc~~ff~gia~~Q~-~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~ 1423 (1670)
-..-|..-||.+--+... ..++|++.+.++..+.+. +-|+| ...+-+|-. .|+++
T Consensus 185 ~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt------~~ely-----------~~KarilKh--~G~~~ 245 (517)
T PF12569_consen 185 EEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT------LVELY-----------MTKARILKH--AGDLK 245 (517)
T ss_pred cccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------cHHHH-----------HHHHHHHHH--CCCHH
Confidence 000111123333222222 444555555555444221 35667 677778877 88888
Q ss_pred HHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHHHHHHhhhcccccccccchhhhccccchhhHH
Q 000322 1424 EARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDRARSLPYLKLLPRQFINNIERPRLQQ 1503 (1670)
Q Consensus 1424 EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~~~KtVsTYLDTAWILf~~~~lARiYI~~i~k~rv~~ 1503 (1670)
+|..++|.|-+.+... -..-+..|.|+.-.+ ..++|+.|-. +|.+...
T Consensus 246 ~Aa~~~~~Ar~LD~~D--RyiNsK~aKy~LRa~-~~e~A~~~~~--------------~Ftr~~~--------------- 293 (517)
T PF12569_consen 246 EAAEAMDEARELDLAD--RYINSKCAKYLLRAG-RIEEAEKTAS--------------LFTREDV--------------- 293 (517)
T ss_pred HHHHHHHHHHhCChhh--HHHHHHHHHHHHHCC-CHHHHHHHHH--------------hhcCCCC---------------
Confidence 8888888888888766 333445555555444 3555555433 3433221
Q ss_pred HHhhhcCCCCCChhhHHHHHhhccCCCCcccccccccchhHHHHHHHhhcCcchhhHHHHHHHhhccCCCCCCCCCchhH
Q 000322 1504 LIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNKDHNPNITDAVPESV 1583 (1670)
Q Consensus 1504 liDqaL~~~S~dss~~nkALE~W~g~slLpqKI~~kKyi~dfVE~ime~~P~Ny~Lal~v~kll~k~~~~~~~d~~s~~~ 1583 (1670)
+..++.+..=-+|+ +..+.++..- =.+|++||--+..+.+||. +---.+.
T Consensus 294 ----------~~~~~L~~mQc~Wf--------------~~e~a~a~~r--~~~~~~ALk~~~~v~k~f~----~~~~DQf 343 (517)
T PF12569_consen 294 ----------DPLSNLNDMQCMWF--------------ETECAEAYLR--QGDYGLALKRFHAVLKHFD----DFEEDQF 343 (517)
T ss_pred ----------CcccCHHHHHHHHH--------------HHHHHHHHHH--HhhHHHHHHHHHHHHHHHH----HHhcccc
Confidence 11112333334675 3444444443 2689999999999999988 4444455
Q ss_pred HHHHhhhhhhhhhccCCCCchHHHHHHHHHhhhchhHHHHHHHHHHhhhccccchHHHHHHHHhhhcc
Q 000322 1584 LFWASSSLVSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPFSIKLWKCYYDLSKT 1651 (1670)
Q Consensus 1584 ~fwA~s~l~~ai~~a~pvape~vWveaa~~l~~l~~~~~i~~rfy~~AlsvyPfS~~LW~~y~~~~~~ 1651 (1670)
-|-.-.+==..+ ..||+--.|.+.|.+ +.||-+|. ..+++.|+.+--.
T Consensus 344 DFH~Yc~RK~t~---------r~Y~~~L~~ed~l~~-----~~~y~raa------~~ai~iYl~l~d~ 391 (517)
T PF12569_consen 344 DFHSYCLRKMTL---------RAYVDMLRWEDKLRS-----HPFYRRAA------KGAIRIYLELHDK 391 (517)
T ss_pred cHHHHHHhhccH---------HHHHHHHHHHHHhhc-----CHHHHHHH------HHHHHHHHHHhcC
Confidence 555443333333 467999999999998 89999986 5677888877543
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.88 E-value=0.0024 Score=72.91 Aligned_cols=128 Identities=16% Similarity=0.064 Sum_probs=92.0
Q ss_pred cHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHH---HHHHHHhCCCCchHHHHHHHHHhhCCCCHH-
Q 000322 1010 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWIT---YLLIFYSNTNSVGKDDMFSYSVKHNEGSYA- 1085 (1670)
Q Consensus 1010 d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~---yl~lY~~~~~~eea~emlekAVelnP~NY~- 1085 (1670)
..+.+.-.|..+... |+++.|+.++.++|+.+|++..+|.. ++......+....+...++.+....|....
T Consensus 42 ~~e~~~~~a~~~~~~-----g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 116 (355)
T cd05804 42 ERERAHVEALSAWIA-----GDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYL 116 (355)
T ss_pred HHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHH
Confidence 345565556655554 45699999999999999999999883 222222223333344445444466666655
Q ss_pred ---HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000322 1086 ---LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1086 ---LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1158 (1670)
++..|...+ .|++|+..+++..+.. |+. ..++..+.++|.+.|++++|+..+.+...
T Consensus 117 ~~~~a~~~~~~G--------~~~~A~~~~~~al~~~-p~~-------~~~~~~la~i~~~~g~~~eA~~~l~~~l~ 176 (355)
T cd05804 117 LGMLAFGLEEAG--------QYDRAEEAARRALELN-PDD-------AWAVHAVAHVLEMQGRFKEGIAFMESWRD 176 (355)
T ss_pred HHHHHHHHHHcC--------CHHHHHHHHHHHHhhC-CCC-------cHHHHHHHHHHHHcCCHHHHHHHHHhhhh
Confidence 445777788 8899999999999988 443 57788999999999999999997766654
No 80
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.87 E-value=9.3e-05 Score=76.60 Aligned_cols=95 Identities=8% Similarity=-0.081 Sum_probs=82.3
Q ss_pred HHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHH
Q 000322 1014 CVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLM 1089 (1670)
Q Consensus 1014 WLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----Lwlm 1089 (1670)
|..++..+.. .|+++.|+..|.+++.++|.++.+|+.++.++...+...++.+.|++|++++|++.. ++..
T Consensus 27 ~~~~g~~~~~-----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~ 101 (144)
T PRK15359 27 VYASGYASWQ-----EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVC 101 (144)
T ss_pred HHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 4455554443 467899999999999999999999999999999999999999999999999999977 6678
Q ss_pred HHhcCCCcccchhhHHHHHHHHHHhhhcCCCCc
Q 000322 1090 YINSRTPLNHRLDAYDAALSVLCRCASASDGDE 1122 (1670)
Q Consensus 1090 YInsr~slddrl~~YdkAI~aLe~las~~~~Dr 1122 (1670)
|...+ .+++|+..|.+..+.. |+.
T Consensus 102 l~~~g--------~~~eAi~~~~~Al~~~-p~~ 125 (144)
T PRK15359 102 LKMMG--------EPGLAREAFQTAIKMS-YAD 125 (144)
T ss_pred HHHcC--------CHHHHHHHHHHHHHhC-CCC
Confidence 88888 8899999999988887 443
No 81
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.0026 Score=78.82 Aligned_cols=384 Identities=15% Similarity=0.108 Sum_probs=206.9
Q ss_pred hCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH---HHHHHHhcCCCcccchhhHHHHHHH-HHHhhhcCCC
Q 000322 1045 ADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---LWLMYINSRTPLNHRLDAYDAALSV-LCRCASASDG 1120 (1670)
Q Consensus 1045 INPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~---LwlmYInsr~slddrl~~YdkAI~a-Le~las~~~~ 1120 (1670)
.++.+.-+.-..++++|+.+.-.++.+-|++-++++-+.+. -..|- +-..|+.+ +.+.....+.
T Consensus 105 ~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~------------a~~a~l~~~~~q~v~~v~e 172 (652)
T KOG2376|consen 105 LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL------------AVAAALQVQLLQSVPEVPE 172 (652)
T ss_pred ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH------------HHHHhhhHHHHHhccCCCc
Confidence 45555556666677777777666677777777777666655 11111 11222222 2222222222
Q ss_pred CcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHH---HHHhh
Q 000322 1121 DEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY---LVIYR 1197 (1670)
Q Consensus 1121 Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iY---llrYr 1197 (1670)
+- -|.++-.+=.+.-.|+|.+||+ |+.+|.. .-+.-|..+|.+ -..| +--.+
T Consensus 173 ~s-------yel~yN~Ac~~i~~gky~qA~e----lL~kA~~----------~~~e~l~~~d~~----eEeie~el~~Ir 227 (652)
T KOG2376|consen 173 DS-------YELLYNTACILIENGKYNQAIE----LLEKALR----------ICREKLEDEDTN----EEEIEEELNPIR 227 (652)
T ss_pred ch-------HHHHHHHHHHHHhcccHHHHHH----HHHHHHH----------HHHHhhcccccc----hhhHHHHHHHHH
Confidence 22 5777888888899999999999 5543311 112223445554 2223 22235
Q ss_pred ccchHHHhhhhhhhhhhccCCCCcccchhhHHH----HHHHHHHHHHHHhhhcCCcchhhhh--hhchhhHhHH------
Q 000322 1198 KLPDAVLQLLECEKELFAIDWPPVQLEDDEKQR----AIKLIEMAVNSVELYSNGESLEKET--NLRSAHCFAV------ 1265 (1670)
Q Consensus 1198 vLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdn----alAL~smA~dYY~~~~ndesla~~~--~~kt~~~fKL------ 1265 (1670)
+.+.=+++..|..+|+..| |+.+++.+|-. |++.-.+ -++.++.....+. -.+-.+++++
T Consensus 228 vQlayVlQ~~Gqt~ea~~i---y~~~i~~~~~D~~~~Av~~NNL-----va~~~d~~~~d~~~l~~k~~~~~~l~~~~l~ 299 (652)
T KOG2376|consen 228 VQLAYVLQLQGQTAEASSI---YVDIIKRNPADEPSLAVAVNNL-----VALSKDQNYFDGDLLKSKKSQVFKLAEFLLS 299 (652)
T ss_pred HHHHHHHHHhcchHHHHHH---HHHHHHhcCCCchHHHHHhcch-----hhhccccccCchHHHHHHHHHHHHhHHHHHH
Confidence 5667778888999999998 88776655433 3322111 1112222221111 0011111111
Q ss_pred --------HHHHHHH---H-hcCHHHHHHHHHHHHHhCCCch-hHHHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHH
Q 000322 1266 --------NHIWCMA---V-LNGLECSMNLLEKYIKLYPSCL-ELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQ 1332 (1670)
Q Consensus 1266 --------N~IR~lI---~-LEDse~A~~LfdklLk~~P~d~-eL~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~ 1332 (1670)
+.++... . .+--.++++++-++-...|... ++.|-.+++...+...++..++..-....|.+.-.+.
T Consensus 300 ~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~ 379 (652)
T KOG2376|consen 300 KLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVL 379 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHH
Confidence 1111111 1 3366777777777666665543 3455555543333477889999999999999954333
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH----hhhhccc--ccccchhhhcccCCCCCCCCCCC-------CCccccccc
Q 000322 1333 CIWNQYVEYALQNGRHDFAAELMDRWFH----SVWKVQY--SQVEISDPLVADMSHSSPESTST-------SDPEFSVSN 1399 (1670)
Q Consensus 1333 caW~QLIq~al~~en~d~Ai~Lc~~ff~----gia~~Q~--~~deALDaLrkgns~i~~es~s~-------~vSDfy~~~ 1399 (1670)
.-.+|+.+.+|++..|+++...|.. ++...+. ....++.++.....-. ++.++ ....-.++.
T Consensus 380 ---L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~--~~a~~vl~~Ai~~~~~~~t~s 454 (652)
T KOG2376|consen 380 ---LLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDN--DSASAVLDSAIKWWRKQQTGS 454 (652)
T ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCC--ccHHHHHHHHHHHHHHhcccc
Confidence 3348889999999999999996442 2222222 3333333333221110 00000 000000000
Q ss_pred ccchhhHHHHHHH-HHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHHHHHH--
Q 000322 1400 RNQMDVMFGYLNL-SLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYL-- 1476 (1670)
Q Consensus 1400 ~~q~d~~fa~LGD-~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~~~KtVsTYL-- 1476 (1670)
-+.-.+|++ +=+....|+-+||..-||.-++++|+. .++|---..= ....|-++|+.|+..+.-..+..
T Consensus 455 ----~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d--~~~l~~lV~a--~~~~d~eka~~l~k~L~p~~~l~~v 526 (652)
T KOG2376|consen 455 ----IALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPND--TDLLVQLVTA--YARLDPEKAESLSKKLPPLKGLKAV 526 (652)
T ss_pred ----hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCch--HHHHHHHHHH--HHhcCHHHHHHHhhcCCCcccchhc
Confidence 011245555 445567899999999999999999976 4444332222 12346789999998442222222
Q ss_pred --h----hhccccccc
Q 000322 1477 --D----RARSLPYLK 1486 (1670)
Q Consensus 1477 --D----TAWILf~~~ 1486 (1670)
| +.|+.+-++
T Consensus 527 dVd~LE~s~ga~~~~~ 542 (652)
T KOG2376|consen 527 DVDALEKSDGAKYSEA 542 (652)
T ss_pred CchHhhhccCcchhhh
Confidence 2 258888776
No 82
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.0015 Score=78.20 Aligned_cols=289 Identities=14% Similarity=0.099 Sum_probs=205.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH---HHHHHHhcCCCcccchhhHHHHH
Q 000322 1032 MKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---LWLMYINSRTPLNHRLDAYDAAL 1108 (1670)
Q Consensus 1032 ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~---LwlmYInsr~slddrl~~YdkAI 1108 (1670)
+..+..++-+-+...|++..+...++.+|+..|+..++..-|+++--++|++.. ++-|.+..+. .|++--
T Consensus 214 ~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg-------~~e~~~ 286 (564)
T KOG1174|consen 214 DASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEG-------GCEQDS 286 (564)
T ss_pred hhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhcc-------CHhhHH
Confidence 577888899999999999999999999999999888899999999999998877 7777777762 344444
Q ss_pred HHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhH
Q 000322 1109 SVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWV 1188 (1670)
Q Consensus 1109 ~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL 1188 (1670)
..-|.+.+..+.. + .-|+.-.+++--.++|.-|+. +-..++.. +|+ .+..|
T Consensus 287 ~L~~~Lf~~~~~t---a-----~~wfV~~~~l~~~K~~~rAL~----~~eK~I~~-~~r-----~~~al----------- 337 (564)
T KOG1174|consen 287 ALMDYLFAKVKYT---A-----SHWFVHAQLLYDEKKFERALN----FVEKCIDS-EPR-----NHEAL----------- 337 (564)
T ss_pred HHHHHHHhhhhcc---h-----hhhhhhhhhhhhhhhHHHHHH----HHHHHhcc-Ccc-----cchHH-----------
Confidence 4445565544222 2 334455566667788888887 33333332 222 12222
Q ss_pred HHHHHHHhhccchHHHhhhhhhhhhhc-cCCCCcccchhhHHHHHHHH-HHHHHHHhhhcCCcchhhhhhhchhhHhHHH
Q 000322 1189 CCVYLVIYRKLPDAVLQLLECEKELFA-IDWPPVQLEDDEKQRAIKLI-EMAVNSVELYSNGESLEKETNLRSAHCFAVN 1266 (1670)
Q Consensus 1189 ~~iYllrYrvLPGn~y~q~e~~KEAf~-I~W~y~~vlkdEPdnalAL~-smA~dYY~~~~ndesla~~~~~kt~~~fKLN 1266 (1670)
.|-|+++.+.++..+|.- . -.|.-|- .. .+.|+ -
T Consensus 338 ---------ilKG~lL~~~~R~~~A~IaF------------R~Aq~Lap~r-L~~Y~----------------------G 373 (564)
T KOG1174|consen 338 ---------ILKGRLLIALERHTQAVIAF------------RTAQMLAPYR-LEIYR----------------------G 373 (564)
T ss_pred ---------HhccHHHHhccchHHHHHHH------------HHHHhcchhh-HHHHH----------------------H
Confidence 345666777777666521 1 0111111 11 23333 2
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCchhH-HHHHHHH--hhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Q 000322 1267 HIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARL--QKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYAL 1343 (1670)
Q Consensus 1267 ~IR~lI~LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL--~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al 1343 (1670)
++-+|.+.+...+|+-+..-.++.-|.++.- .|+++-+ ..--|-++|...++++|.++|.-.+ +=+-+++...
T Consensus 374 L~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~----AV~~~AEL~~ 449 (564)
T KOG1174|consen 374 LFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTP----AVNLIAELCQ 449 (564)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHH----HHHHHHHHHH
Confidence 4667777779999999999999999999987 7776443 3333567899999999999999999 6677799999
Q ss_pred HcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHH
Q 000322 1344 QNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWN 1423 (1670)
Q Consensus 1344 ~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~ 1423 (1670)
..|.+..++.|+++++.-++ | |..--.|||.+-- .+.++
T Consensus 450 ~Eg~~~D~i~LLe~~L~~~~------------------------------D---------~~LH~~Lgd~~~A--~Ne~Q 488 (564)
T KOG1174|consen 450 VEGPTKDIIKLLEKHLIIFP------------------------------D---------VNLHNHLGDIMRA--QNEPQ 488 (564)
T ss_pred hhCccchHHHHHHHHHhhcc------------------------------c---------cHHHHHHHHHHHH--hhhHH
Confidence 99999999999988554322 1 1122678998888 99999
Q ss_pred HHHHHHHHHHhhccCCcHHHHHHH
Q 000322 1424 EARLAIDAALKAAASEHFKHCVRE 1447 (1670)
Q Consensus 1424 EAfaAYDKALkanp~N~~i~cLNN 1447 (1670)
+|.+-|-+||..+|.+ ...+.-
T Consensus 489 ~am~~y~~ALr~dP~~--~~sl~G 510 (564)
T KOG1174|consen 489 KAMEYYYKALRQDPKS--KRTLRG 510 (564)
T ss_pred HHHHHHHHHHhcCccc--hHHHHH
Confidence 9999999999999988 666543
No 83
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.0016 Score=78.88 Aligned_cols=134 Identities=16% Similarity=0.139 Sum_probs=95.5
Q ss_pred HHHHHH-hcCHHHHHHHHHHHHHhCCCchhH-HHHH-HHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHH
Q 000322 1268 IWCMAV-LNGLECSMNLLEKYIKLYPSCLEL-VLMK-ARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQ 1344 (1670)
Q Consensus 1268 IR~lI~-LEDse~A~~LfdklLk~~P~d~eL-~L~A-AyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~ 1344 (1670)
|..|.. ..+.|.|+..|+++|+++|.-..+ .|.+ -||++|+ ...|+..|.+|+.++|.+-. +|+=|-|
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKN-t~AAi~sYRrAvdi~p~DyR----AWYGLGQ---- 406 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKN-THAAIESYRRAVDINPRDYR----AWYGLGQ---- 406 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcc-cHHHHHHHHHHHhcCchhHH----HHhhhhH----
Confidence 445544 449999999999999999999999 4554 5789997 88999999999999999999 9976655
Q ss_pred cCChHHHHHHHHHHHHhhhhccc-----------------------ccccchhhhcccCCCCCCCCCCCCCccccccccc
Q 000322 1345 NGRHDFAAELMDRWFHSVWKVQY-----------------------SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRN 1401 (1670)
Q Consensus 1345 ~en~d~Ai~Lc~~ff~gia~~Q~-----------------------~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~ 1401 (1670)
|.+++.-=|-++.|+|+ +.++|+.-+++...... ...+-|
T Consensus 407 ------aYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d------te~~~l----- 469 (559)
T KOG1155|consen 407 ------AYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD------TEGSAL----- 469 (559)
T ss_pred ------HHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc------cchHHH-----
Confidence 33334332223333332 66677776665522211 023334
Q ss_pred chhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhh
Q 000322 1402 QMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKA 1435 (1670)
Q Consensus 1402 q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALka 1435 (1670)
..||..+-+ .++.+||-.+|+++++.
T Consensus 470 ------~~LakLye~--l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 470 ------VRLAKLYEE--LKDLNEAAQYYEKYVEV 495 (559)
T ss_pred ------HHHHHHHHH--HHhHHHHHHHHHHHHHH
Confidence 778888888 78888999999998874
No 84
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.81 E-value=0.00019 Score=84.65 Aligned_cols=95 Identities=16% Similarity=0.115 Sum_probs=81.6
Q ss_pred HHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHH
Q 000322 1014 CVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLM 1089 (1670)
Q Consensus 1014 WLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----Lwlm 1089 (1670)
++..|...+.. |+|+.|+.+|.+||+.+|+++.+|+.++.+|...+...++...|++|++++|++.. ++..
T Consensus 5 l~~~a~~a~~~-----~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~ 79 (356)
T PLN03088 5 LEDKAKEAFVD-----DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTA 79 (356)
T ss_pred HHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 33444444443 67899999999999999999999999999999999999999999999999998776 6778
Q ss_pred HHhcCCCcccchhhHHHHHHHHHHhhhcCCCC
Q 000322 1090 YINSRTPLNHRLDAYDAALSVLCRCASASDGD 1121 (1670)
Q Consensus 1090 YInsr~slddrl~~YdkAI~aLe~las~~~~D 1121 (1670)
|...+ .|+.|+..|+++....+.+
T Consensus 80 ~~~lg--------~~~eA~~~~~~al~l~P~~ 103 (356)
T PLN03088 80 CMKLE--------EYQTAKAALEKGASLAPGD 103 (356)
T ss_pred HHHhC--------CHHHHHHHHHHHHHhCCCC
Confidence 88888 9999999999999887333
No 85
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.80 E-value=0.00094 Score=88.02 Aligned_cols=230 Identities=18% Similarity=0.263 Sum_probs=158.1
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHH
Q 000322 1070 DDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKA 1149 (1670)
Q Consensus 1070 ~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKA 1149 (1670)
.+-|++-|.-+|++--+|.-|+.-...+. ..++|+.+.|++...-+.- ...--+-+|.+++.|+.+-|.-+..
T Consensus 1444 aeDferlvrssPNSSi~WI~YMaf~Lels----EiekAR~iaerAL~tIN~R---EeeEKLNiWiA~lNlEn~yG~eesl 1516 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHLELS----EIEKARKIAERALKTINFR---EEEEKLNIWIAYLNLENAYGTEESL 1516 (1710)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhhh----hhHHHHHHHHHHhhhCCcc---hhHHHHHHHHHHHhHHHhhCcHHHH
Confidence 36789999999999999999998775555 5689999999987643111 1223389999999999999976666
Q ss_pred HHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHH
Q 000322 1150 IQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQ 1229 (1670)
Q Consensus 1150 I~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPd 1229 (1670)
..++.|.-+ . |..| ..|.. +..+|.-.++.++|-.+
T Consensus 1517 ~kVFeRAcq-----y------------------------cd~~-~V~~~-L~~iy~k~ek~~~A~el------------- 1552 (1710)
T KOG1070|consen 1517 KKVFERACQ-----Y------------------------CDAY-TVHLK-LLGIYEKSEKNDEADEL------------- 1552 (1710)
T ss_pred HHHHHHHHH-----h------------------------cchH-HHHHH-HHHHHHHhhcchhHHHH-------------
Confidence 665555553 1 1111 12333 23455555666555444
Q ss_pred HHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHH--HHHHHHHHhcCHHHHHHHHHHHHHhCCC--chhHHHHHHHHh
Q 000322 1230 RAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAV--NHIWCMAVLNGLECSMNLLEKYIKLYPS--CLELVLMKARLQ 1305 (1670)
Q Consensus 1230 nalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKL--N~IR~lI~LEDse~A~~LfdklLk~~P~--d~eL~L~AAyL~ 1305 (1670)
+. .| .. +.-+.-++ .++..++..++-++|+.++.++|+.-|. -+++.=.-|.|+
T Consensus 1553 --l~--~m----~K--------------KF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1553 --LR--LM----LK--------------KFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred --HH--HH----HH--------------HhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 11 11 11 11112222 2233434455779999999999999999 666644444555
Q ss_pred hccc-CCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH-------------HHHhhhhccc--cc
Q 000322 1306 KHDF-GDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR-------------WFHSVWKVQY--SQ 1369 (1670)
Q Consensus 1306 ~K~m-~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~-------------ff~gia~~Q~--~~ 1369 (1670)
-|++ ++.++..|+..|...||..- .|+-||.+.+..++.+-+..|.+| ||+-+=.|-+ ..
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtD----lW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTD----LWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchh----HHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 5554 88999999999999999999 999999999999999999999999 6666665555 24
Q ss_pred ccchhhh
Q 000322 1370 VEISDPL 1376 (1670)
Q Consensus 1370 deALDaL 1376 (1670)
++.++..
T Consensus 1687 e~~vE~V 1693 (1710)
T KOG1070|consen 1687 EKNVEYV 1693 (1710)
T ss_pred hhhHHHH
Confidence 4444443
No 86
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00027 Score=85.27 Aligned_cols=141 Identities=17% Similarity=0.145 Sum_probs=109.8
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHH
Q 000322 1030 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1105 (1670)
Q Consensus 1030 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~Yd 1105 (1670)
+..++|.-.|+|||.+||....+|..+++=|+.+++...+.+.|++||+.||.+|. |+++|.-.. +=.
T Consensus 344 ~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~--------Mh~ 415 (559)
T KOG1155|consen 344 SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMK--------MHF 415 (559)
T ss_pred HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhc--------chH
Confidence 34589999999999999999999999999999999999999999999999999998 889998877 444
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcch
Q 000322 1106 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLI 1185 (1670)
Q Consensus 1106 kAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~ 1185 (1670)
=|+-.|-++..--|.| .-+|.+|-++|-..++.+.||.-+.|-.. -|+-++.....--..|..++|-..
T Consensus 416 YaLyYfqkA~~~kPnD--------sRlw~aLG~CY~kl~~~~eAiKCykrai~---~~dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 416 YALYYFQKALELKPND--------SRLWVALGECYEKLNRLEEAIKCYKRAIL---LGDTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred HHHHHHHHHHhcCCCc--------hHHHHHHHHHHHHhccHHHHHHHHHHHHh---ccccchHHHHHHHHHHHHHHhHHH
Confidence 4565555555555455 56999999999999999999996665442 222333444444456777777666
Q ss_pred hhHH
Q 000322 1186 FWVC 1189 (1670)
Q Consensus 1186 AWL~ 1189 (1670)
|..+
T Consensus 485 Aa~~ 488 (559)
T KOG1155|consen 485 AAQY 488 (559)
T ss_pred HHHH
Confidence 6333
No 87
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.78 E-value=0.00011 Score=84.91 Aligned_cols=100 Identities=16% Similarity=0.210 Sum_probs=89.3
Q ss_pred HHHHHHHHHhcccc--cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-----
Q 000322 1013 QCVEMALLILNQDA--NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----- 1085 (1670)
Q Consensus 1013 lWLelAl~~Lnq~~--n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----- 1085 (1670)
-..++|..+=+++. -+.++|.+|++.|..||+++|++++.|+.-+..|++.+.-+.+..-|++|++++| +|+
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-~yskay~R 154 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-HYSKAYGR 154 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-HHHHHHHH
Confidence 47788888888875 3578999999999999999999999999999999999999999999999999996 666
Q ss_pred HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCc
Q 000322 1086 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDE 1122 (1670)
Q Consensus 1086 LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr 1122 (1670)
|++.|..++ .|++|+++|-....-. |+.
T Consensus 155 LG~A~~~~g--------k~~~A~~aykKaLeld-P~N 182 (304)
T KOG0553|consen 155 LGLAYLALG--------KYEEAIEAYKKALELD-PDN 182 (304)
T ss_pred HHHHHHccC--------cHHHHHHHHHhhhccC-CCc
Confidence 889999999 8999999997766665 776
No 88
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.77 E-value=0.0023 Score=79.62 Aligned_cols=87 Identities=21% Similarity=0.185 Sum_probs=71.3
Q ss_pred HHHHHH-hcCHHHHHHHHHHHHHhCCCchhHHHHHHHH-hhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHc
Q 000322 1268 IWCMAV-LNGLECSMNLLEKYIKLYPSCLELVLMKARL-QKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQN 1345 (1670)
Q Consensus 1268 IR~lI~-LEDse~A~~LfdklLk~~P~d~eL~L~AAyL-~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~ 1345 (1670)
+.|... .++.++|+++.+++++.-|+.+++-+.-+++ ...+...+|...++.|..+++.+-- +=...+.+.++.
T Consensus 200 lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRy----iNsK~aKy~LRa 275 (517)
T PF12569_consen 200 LAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRY----INSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHH----HHHHHHHHHHHC
Confidence 444444 7799999999999999999999994444454 4444478999999999999999887 555568999999
Q ss_pred CChHHHHHHHHHH
Q 000322 1346 GRHDFAAELMDRW 1358 (1670)
Q Consensus 1346 en~d~Ai~Lc~~f 1358 (1670)
|.+++|..++..|
T Consensus 276 ~~~e~A~~~~~~F 288 (517)
T PF12569_consen 276 GRIEEAEKTASLF 288 (517)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999653
No 89
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.76 E-value=0.00034 Score=89.31 Aligned_cols=114 Identities=11% Similarity=-0.033 Sum_probs=104.7
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhH
Q 000322 1029 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAY 1104 (1670)
Q Consensus 1029 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~Y 1104 (1670)
-|.|+.|..+|.+|++..|+.+.++..++.+..+.+.-+++..-+++|++.+|+|.. ++......+ .|
T Consensus 99 ~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g--------~~ 170 (694)
T PRK15179 99 AHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIG--------QS 170 (694)
T ss_pred cCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhc--------ch
Confidence 467899999999999999999999999999999999999999999999999999999 666677777 99
Q ss_pred HHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000322 1105 DAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1105 dkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1158 (1670)
++|+.+|+++.+.+ ++. .+.++.+.+++...|+.+.|...+.+-..
T Consensus 171 ~~A~~~y~~~~~~~-p~~-------~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 171 EQADACFERLSRQH-PEF-------ENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHHHHHhcC-CCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999977 566 89999999999999999999997776665
No 90
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.72 E-value=0.00025 Score=85.31 Aligned_cols=109 Identities=18% Similarity=0.330 Sum_probs=96.3
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHH----HHHHHhcCCCcccchhhHH
Q 000322 1030 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYAL----WLMYINSRTPLNHRLDAYD 1105 (1670)
Q Consensus 1030 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~L----wlmYInsr~slddrl~~Yd 1105 (1670)
++++.|+++|.+..+.+|+ +++.++.+|...++..++...+.+|++.+|.++.| +.++++.+ .|+
T Consensus 183 ~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~--------~~~ 251 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK--------KYE 251 (395)
T ss_pred ccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--------CHH
Confidence 4689999999999999975 67778999988888888999999999999999994 45566777 889
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Q 000322 1106 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1157 (1670)
Q Consensus 1106 kAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLE 1157 (1670)
.|+.+..++.... |+. .+.|..|+++|.+.|++++|+.+||-+=
T Consensus 252 lAL~iAk~av~ls-P~~-------f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 252 LALEIAKKAVELS-PSE-------FETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHhC-chh-------HHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999998 565 8999999999999999999999887654
No 91
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.69 E-value=0.00028 Score=60.66 Aligned_cols=93 Identities=16% Similarity=0.221 Sum_probs=79.1
Q ss_pred HHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHH
Q 000322 1013 QCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWL 1088 (1670)
Q Consensus 1013 lWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----Lwl 1088 (1670)
.|..+|..++.+ |+++.|+.+|.++++.+|.+..+|+.++.+|...+....+.++|+++++..|.+.. ++.
T Consensus 2 ~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 76 (100)
T cd00189 2 ALLNLGNLYYKL-----GDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGL 76 (100)
T ss_pred HHHHHHHHHHHH-----hcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHH
Confidence 467777777764 56799999999999999999999999999999999889999999999999998875 556
Q ss_pred HHHhcCCCcccchhhHHHHHHHHHHhhhcC
Q 000322 1089 MYINSRTPLNHRLDAYDAALSVLCRCASAS 1118 (1670)
Q Consensus 1089 mYInsr~slddrl~~YdkAI~aLe~las~~ 1118 (1670)
+|...+ .+++|+..+.+.....
T Consensus 77 ~~~~~~--------~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 77 AYYKLG--------KYEEALEAYEKALELD 98 (100)
T ss_pred HHHHHH--------hHHHHHHHHHHHHccC
Confidence 777777 7899999987766554
No 92
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.68 E-value=0.0063 Score=76.09 Aligned_cols=110 Identities=19% Similarity=0.361 Sum_probs=75.5
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccc----hhhHHHHHHHHHHh
Q 000322 1039 LSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHR----LDAYDAALSVLCRC 1114 (1670)
Q Consensus 1039 LsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddr----l~~YdkAI~aLe~l 1114 (1670)
|..=|--||.+.-.|..|...-.+. ......-.||+|.+.=|.+|-||.-||+.|+.---. .-+|+.--..||+.
T Consensus 16 fEeEilRnp~svk~W~RYIe~k~~s-p~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~ 94 (835)
T KOG2047|consen 16 FEEEILRNPFSVKCWLRYIEHKAGS-PDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERC 94 (835)
T ss_pred hHHHHHcCchhHHHHHHHHHHHccC-ChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHH
Confidence 3444556899999999998885442 244567789999999999999999999766322211 22333333444443
Q ss_pred hhc-CCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000322 1115 ASA-SDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1115 as~-~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1158 (1670)
.-- ++-+ -||+.-+++...+|++-.-..+++|-+.
T Consensus 95 lv~mHkmp---------RIwl~Ylq~l~~Q~~iT~tR~tfdrALr 130 (835)
T KOG2047|consen 95 LVFMHKMP---------RIWLDYLQFLIKQGLITRTRRTFDRALR 130 (835)
T ss_pred HHHHhcCC---------HHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 321 2223 3899999999999999988888887664
No 93
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.67 E-value=0.0001 Score=65.37 Aligned_cols=63 Identities=16% Similarity=0.272 Sum_probs=55.0
Q ss_pred HHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCC
Q 000322 1016 EMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1083 (1670)
Q Consensus 1016 elAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~N 1083 (1670)
.+|..++.. |+++.|..+|..+++.+|.++.+|+.++.++..++...++..+|++|++.+|+|
T Consensus 2 ~~a~~~~~~-----g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQ-----GDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHC-----THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHc-----CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 345555554 678999999999999999999999999999999999999999999999999986
No 94
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.0087 Score=74.15 Aligned_cols=284 Identities=14% Similarity=0.076 Sum_probs=162.9
Q ss_pred cHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----
Q 000322 1010 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---- 1085 (1670)
Q Consensus 1010 d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~---- 1085 (1670)
+.++-.+.|..+.-.- +|..-+.++.-.||.||=...++...+..++..+++.+...+=-+-|+..|.+-.
T Consensus 243 ~~dll~~~ad~~y~~c-----~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~a 317 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGC-----RFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFA 317 (611)
T ss_pred cHHHHHHHHHHHHHcC-----hHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhh
Confidence 3466666666666553 3577777777777788777777776666777777777666666666777776654
Q ss_pred HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCC
Q 000322 1086 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND 1165 (1670)
Q Consensus 1086 LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~s 1165 (1670)
++.+|.-.+ .|.+|+..|-....-. +.= -..|+..-+-|.-.|..|+|++.+.+=-+. ..|..
T Consensus 318 Vg~YYl~i~--------k~seARry~SKat~lD-~~f-------gpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~h 380 (611)
T KOG1173|consen 318 VGCYYLMIG--------KYSEARRYFSKATTLD-PTF-------GPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCH 380 (611)
T ss_pred HHHHHHHhc--------CcHHHHHHHHHHhhcC-ccc-------cHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCc
Confidence 667777766 6777777775444332 221 345677777777777777777755432221 12332
Q ss_pred cccchHHHHHHhhccCCcchhhHHHHH-HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhh
Q 000322 1166 RHSLFLSDILTCLTISDKLIFWVCCVY-LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVEL 1244 (1670)
Q Consensus 1166 E~~lSLsKi~~YLt~sDR~~AWL~~iY-llrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~~ 1244 (1670)
. ...---+ .|-.++. ..|+..| ...|.+-|-+-+.-++.--=+|. ..+-.-|...|..|+.-...
T Consensus 381 l-P~LYlgm-ey~~t~n---~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~---------~~~y~~A~~~f~~~l~~ik~ 446 (611)
T KOG1173|consen 381 L-PSLYLGM-EYMRTNN---LKLAEKFFKQALAIAPSDPLVLHELGVVAYT---------YEEYPEALKYFQKALEVIKS 446 (611)
T ss_pred c-hHHHHHH-HHHHhcc---HHHHHHHHHHHHhcCCCcchhhhhhhheeeh---------HhhhHHHHHHHHHHHHHhhh
Confidence 2 1111111 1211111 2355554 44444444433333332111111 12223344444443211111
Q ss_pred hcCCcchhhhhhhchhhHhHH--HHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHH
Q 000322 1245 YSNGESLEKETNLRSAHCFAV--NHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEA 1320 (1670)
Q Consensus 1245 ~~ndesla~~~~~kt~~~fKL--N~IR~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~A 1320 (1670)
.+ +++. -.-|+ |+.-.+--++..++|+..|+++|.++|.++.. .+..-|..+++ .+.|+.-|.+|
T Consensus 447 -~~--------~e~~-~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgn-ld~Aid~fhKa 515 (611)
T KOG1173|consen 447 -VL--------NEKI-FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGN-LDKAIDHFHKA 515 (611)
T ss_pred -cc--------cccc-chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC-hHHHHHHHHHH
Confidence 11 1122 34444 32222222668899999999999999999999 55555545554 99999999999
Q ss_pred HHhCCCCCchHHHHHHHHHHHHHHc
Q 000322 1321 LIKWPKGVPGIQCIWNQYVEYALQN 1345 (1670)
Q Consensus 1321 L~~~PkNa~g~~caW~QLIq~al~~ 1345 (1670)
|.+.|+|.- + -+++..+++.
T Consensus 516 L~l~p~n~~----~-~~lL~~aie~ 535 (611)
T KOG1173|consen 516 LALKPDNIF----I-SELLKLAIED 535 (611)
T ss_pred HhcCCccHH----H-HHHHHHHHHh
Confidence 999999977 3 2455555544
No 95
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.65 E-value=0.0013 Score=81.12 Aligned_cols=239 Identities=15% Similarity=0.096 Sum_probs=138.6
Q ss_pred hhhccccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCC
Q 000322 1004 LKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1083 (1670)
Q Consensus 1004 le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~N 1083 (1670)
+++.|.+.+.|..|-.....-+.. ..|...|.+||++||++-++...|+-.|...+-...+..||.+=++..|.-
T Consensus 312 VkqdP~haeAW~~LG~~qaENE~E-----~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y 386 (579)
T KOG1125|consen 312 VKQDPQHAEAWQKLGITQAENENE-----QNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKY 386 (579)
T ss_pred HhhChHHHHHHHHhhhHhhhccch-----HHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccc
Confidence 444466667777765544332222 567777777777777777777777777766666666777777777766654
Q ss_pred HHHHHHHHhcC----CCcccchhhHHHHHHHHHHhhhcCC--CCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Q 000322 1084 YALWLMYINSR----TPLNHRLDAYDAALSVLCRCASASD--GDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1157 (1670)
Q Consensus 1084 Y~LwlmYInsr----~slddrl~~YdkAI~aLe~las~~~--~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLE 1157 (1670)
+++.---.+.. .++.+.. ...+-.+.|-+++...+ .| -||-..|==||..+|+|++||..+.-.+
T Consensus 387 ~~l~~a~~~~~~~~~~s~~~~~-~l~~i~~~fLeaa~~~~~~~D--------pdvQ~~LGVLy~ls~efdraiDcf~~AL 457 (579)
T KOG1125|consen 387 VHLVSAGENEDFENTKSFLDSS-HLAHIQELFLEAARQLPTKID--------PDVQSGLGVLYNLSGEFDRAVDCFEAAL 457 (579)
T ss_pred hhccccCccccccCCcCCCCHH-HHHHHHHHHHHHHHhCCCCCC--------hhHHhhhHHHHhcchHHHHHHHHHHHHH
Confidence 44321111111 1223322 44555555555555552 23 4555556666666677777766333333
Q ss_pred ccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHH
Q 000322 1158 IPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEM 1237 (1670)
Q Consensus 1158 q~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~sm 1237 (1670)
+ +.| ++...==.+
T Consensus 458 ~-----v~P--------------------------------------------------------------nd~~lWNRL 470 (579)
T KOG1125|consen 458 Q-----VKP--------------------------------------------------------------NDYLLWNRL 470 (579)
T ss_pred h-----cCC--------------------------------------------------------------chHHHHHHh
Confidence 2 222 221111111
Q ss_pred HHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccH
Q 000322 1238 AVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAV-LNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSS 1314 (1670)
Q Consensus 1238 A~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~-LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~ 1314 (1670)
+ .- .+ -+.+++|++.|.++|++.|.-+-. -|.-++|.... -++|+
T Consensus 471 G------------------------------At-LAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~-ykEA~ 518 (579)
T KOG1125|consen 471 G------------------------------AT-LANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA-YKEAV 518 (579)
T ss_pred h------------------------------HH-hcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh-HHHHH
Confidence 1 01 12 238899999999999999999988 77777877664 77999
Q ss_pred HHHHHHHHhCCCCCc----h--HHHHHHHHHHHHHHcCChHHHHHHH
Q 000322 1315 VGFEEALIKWPKGVP----G--IQCIWNQYVEYALQNGRHDFAAELM 1355 (1670)
Q Consensus 1315 svle~AL~~~PkNa~----g--~~caW~QLIq~al~~en~d~Ai~Lc 1355 (1670)
.-|..||.+.+++.. . ---+|..|=...+.-++.|.+.+.+
T Consensus 519 ~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 519 KHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 999999999998332 1 1236644433334445555455554
No 96
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.64 E-value=0.0003 Score=80.47 Aligned_cols=120 Identities=18% Similarity=0.262 Sum_probs=99.3
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCch-HHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHH
Q 000322 1030 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVG-KDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAAL 1108 (1670)
Q Consensus 1030 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~ee-a~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI 1108 (1670)
++.++|..+|.+|++-.+....+|..+|.+.+...++.. |...||.|++.-|.+..+|+.|++....++ ..+.|+
T Consensus 15 ~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~----d~~~aR 90 (280)
T PF05843_consen 15 EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLN----DINNAR 90 (280)
T ss_dssp HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-----HHHHH
T ss_pred CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhC----cHHHHH
Confidence 457999999999998888899999999999888666666 999999999999999999999999886665 458999
Q ss_pred HHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000322 1109 SVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1109 ~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1158 (1670)
.+||+..+.. +.. .....+|-..++++..-|+++.+.....|+.+
T Consensus 91 ~lfer~i~~l-~~~----~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 91 ALFERAISSL-PKE----KQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHHHCCTS-SCH----HHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-Cch----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999887 342 01467999999999999999999887777765
No 97
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00034 Score=80.94 Aligned_cols=107 Identities=11% Similarity=0.065 Sum_probs=94.1
Q ss_pred hhhhhccccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC---CchHHHHHHHHHh
Q 000322 1002 NKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN---SVGKDDMFSYSVK 1078 (1670)
Q Consensus 1002 ~~le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~---~eea~emlekAVe 1078 (1670)
.+|-+.|.|.+.|+.|+.-|+..+. ++.|+..|.+|+++.|+++++|--|+..++...+ ..++.++|.+|++
T Consensus 147 ~~L~~nP~d~egW~~Lg~~ym~~~~-----~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 147 THLQQNPGDAEGWDLLGRAYMALGR-----ASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred HHHHhCCCCchhHHHHHHHHHHhcc-----hhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 3677789999999999999999965 5999999999999999999999999888775554 4458999999999
Q ss_pred hCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCC
Q 000322 1079 HNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD 1121 (1670)
Q Consensus 1079 lnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~D 1121 (1670)
++|.|.. |+.-|..++ .|.+|+...+.|.+..+++
T Consensus 222 ~D~~~iral~lLA~~afe~g--------~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 222 LDPANIRALSLLAFAAFEQG--------DYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred cCCccHHHHHHHHHHHHHcc--------cHHHHHHHHHHHHhcCCCC
Confidence 9999988 777788888 8999999999999988555
No 98
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.60 E-value=0.036 Score=69.42 Aligned_cols=86 Identities=21% Similarity=0.378 Sum_probs=68.3
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhCCCCHH---HHHHHHhcCCCcccchhh
Q 000322 1028 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN-SVGKDDMFSYSVKHNEGSYA---LWLMYINSRTPLNHRLDA 1103 (1670)
Q Consensus 1028 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~-~eea~emlekAVelnP~NY~---LwlmYInsr~slddrl~~ 1103 (1670)
+.|..+.+..+|.+|+..-|.+..+|..|...-..... ++.+++.|++|+.++--.|. ||.+||..... .. .
T Consensus 91 klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~-qk---s 166 (577)
T KOG1258|consen 91 KLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENG-QK---S 166 (577)
T ss_pred HhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhc-cc---c
Confidence 46778999999999999999999999999888765444 45599999999999987777 99999997621 11 4
Q ss_pred HHHHHHHHHHhhhc
Q 000322 1104 YDAALSVLCRCASA 1117 (1670)
Q Consensus 1104 YdkAI~aLe~las~ 1117 (1670)
+.+-..+|++..+.
T Consensus 167 ~k~v~~iyeRilei 180 (577)
T KOG1258|consen 167 WKRVANIYERILEI 180 (577)
T ss_pred HHHHHHHHHHHHhh
Confidence 56667777666553
No 99
>PLN02789 farnesyltranstransferase
Probab=97.56 E-value=0.0063 Score=71.63 Aligned_cols=247 Identities=12% Similarity=0.093 Sum_probs=140.3
Q ss_pred HHHHHHHHH-hcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhccc--CCccHHHHHHHHHhCCCCCchHHHHHHHHHHH
Q 000322 1265 VNHIWCMAV-LNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDF--GDLSSVGFEEALIKWPKGVPGIQCIWNQYVEY 1341 (1670)
Q Consensus 1265 LN~IR~lI~-LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m--~~~A~svle~AL~~~PkNa~g~~caW~QLIq~ 1341 (1670)
+.++|-++. .+.++.|+.+++++++.+|.+.++|.+-..+..+-+ ..+++..+++|+..+|+|.+ +|+--...
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq----aW~~R~~~ 115 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ----IWHHRRWL 115 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH----HhHHHHHH
Confidence 345666655 789999999999999999999999766555433322 46899999999999999999 66432222
Q ss_pred HHHcCC--hHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhh
Q 000322 1342 ALQNGR--HDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQ 1419 (1670)
Q Consensus 1342 al~~en--~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lq 1419 (1670)
....+. ++.++.++.+ ++. + .+.-| ..+...|-++.. .
T Consensus 116 l~~l~~~~~~~el~~~~k-----------------al~-----~--------dpkNy--------~AW~~R~w~l~~--l 155 (320)
T PLN02789 116 AEKLGPDAANKELEFTRK-----------------ILS-----L--------DAKNY--------HAWSHRQWVLRT--L 155 (320)
T ss_pred HHHcCchhhHHHHHHHHH-----------------HHH-----h--------CcccH--------HHHHHHHHHHHH--h
Confidence 222222 1333333322 111 1 01212 234677778888 7
Q ss_pred cCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCc-----ccchhhhHHHHHHHHhh--hc-----ccccccc
Q 000322 1420 NDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKE-----GAPISWQLKLLNSYLDR--AR-----SLPYLKL 1487 (1670)
Q Consensus 1420 g~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~K-----AeqMS~~~KtVsTYLDT--AW-----ILf~~~~ 1487 (1670)
|++++|.+.|+++|+.+|.| ..+|+.-. |+......+.+ .+++.+..+.|..--+- || +|...+.
T Consensus 156 ~~~~eeL~~~~~~I~~d~~N--~sAW~~R~-~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~ 232 (320)
T PLN02789 156 GGWEDELEYCHQLLEEDVRN--NSAWNQRY-FVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKE 232 (320)
T ss_pred hhHHHHHHHHHHHHHHCCCc--hhHHHHHH-HHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCc
Confidence 88999999999999999999 89998765 44332211211 23344433444222121 44 2222100
Q ss_pred cchhhhccccchhhHHHHhhhcCCCCCChhhHHHHHhhccCCCCcccccccccchhHHHHHHHhhcCcchhhHHHHHHHh
Q 000322 1488 LPRQFINNIERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLL 1567 (1670)
Q Consensus 1488 lARiYI~~i~k~rv~~liDqaL~~~S~dss~~nkALE~W~g~slLpqKI~~kKyi~dfVE~ime~~P~Ny~Lal~v~kll 1567 (1670)
+ . ++.+.+..+.++++......+--++-.+..+.. .........+-|+++ ...++....|+.+|.+|
T Consensus 233 -~--l---~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~------~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 233 -A--L---VSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE------GLQPTAEFRDTVDTL-AEELSDSTLAQAVCSEL 299 (320)
T ss_pred -c--c---ccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh------hhccchhhhhhhhcc-ccccccHHHHHHHHHHH
Confidence 0 0 122334445555555322111122222222211 011112244555555 66677889999999999
Q ss_pred hccCC
Q 000322 1568 NKDHN 1572 (1670)
Q Consensus 1568 ~k~~~ 1572 (1670)
.+++
T Consensus 300 -~~~d 303 (320)
T PLN02789 300 -EVAD 303 (320)
T ss_pred -HhhC
Confidence 5777
No 100
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.50 E-value=0.00088 Score=75.69 Aligned_cols=134 Identities=14% Similarity=0.068 Sum_probs=116.8
Q ss_pred hhhhccccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCC
Q 000322 1003 KLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG 1082 (1670)
Q Consensus 1003 ~le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~ 1082 (1670)
-|+.+|.....|+-+|.-|-...++ +.|...|.+||.++|++..|+-.|.-+.+.++..+++..+|++|++ +|.
T Consensus 61 AL~~DPs~~~a~~~~A~~Yq~~Ge~-----~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~ 134 (250)
T COG3063 61 ALEHDPSYYLAHLVRAHYYQKLGEN-----DLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPA 134 (250)
T ss_pred HHHhCcccHHHHHHHHHHHHHcCCh-----hhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCC
Confidence 5777899999999999999998877 9999999999999999999999999999999999999999999964 443
Q ss_pred CHH-------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHh
Q 000322 1083 SYA-------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISR 1155 (1670)
Q Consensus 1083 NY~-------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~r 1155 (1670)
-+. +.+.-++.+ ..+.|...|.+..... ++. .-.++.|.++....|+|-.|...+++
T Consensus 135 Y~~~s~t~eN~G~Cal~~g--------q~~~A~~~l~raL~~d-p~~-------~~~~l~~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 135 YGEPSDTLENLGLCALKAG--------QFDQAEEYLKRALELD-PQF-------PPALLELARLHYKAGDYAPARLYLER 198 (250)
T ss_pred CCCcchhhhhhHHHHhhcC--------CchhHHHHHHHHHHhC-cCC-------ChHHHHHHHHHHhcccchHHHHHHHH
Confidence 333 667777776 5678888888777766 676 78899999999999999999999988
Q ss_pred hcc
Q 000322 1156 LLI 1158 (1670)
Q Consensus 1156 LEq 1158 (1670)
..+
T Consensus 199 ~~~ 201 (250)
T COG3063 199 YQQ 201 (250)
T ss_pred HHh
Confidence 887
No 101
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.48 E-value=0.00022 Score=63.44 Aligned_cols=63 Identities=11% Similarity=0.186 Sum_probs=56.9
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHH
Q 000322 1029 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYI 1091 (1670)
Q Consensus 1029 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYI 1091 (1670)
.|+++.|+.+|.++++.+|++.++++.|+.+|+..+...++.++|+++++.+|++-.+|.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 478999999999999999999999999999999999999999999999999999766665543
No 102
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.47 E-value=0.012 Score=73.30 Aligned_cols=262 Identities=15% Similarity=0.073 Sum_probs=159.2
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHH
Q 000322 1012 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYI 1091 (1670)
Q Consensus 1012 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYI 1091 (1670)
+....+|-.|..+ |+|+.|..++.+||++ +-...+- +++.-|-.++ +++.+|.
T Consensus 200 ~~~~~La~~y~~~-----g~~e~A~~l~k~Al~~-------------l~k~~G~-----~hl~va~~l~----~~a~~y~ 252 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQ-----GRLEKAEPLCKQALRI-------------LEKTSGL-----KHLVVASMLN----ILALVYR 252 (508)
T ss_pred HHHHHHHHHHHHh-----ccHHHHHHHHHHHHHH-------------HHHccCc-----cCHHHHHHHH----HHHHHHH
Confidence 5555566666655 4468888888888887 1111111 1111111111 7889999
Q ss_pred hcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchH
Q 000322 1092 NSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFL 1171 (1670)
Q Consensus 1092 nsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSL 1171 (1670)
++. ++.+.+..|.+|++++++..... ....--++.-|..+|+.+|+++.|-..+.+-.. .-+
T Consensus 253 ~~~-k~~eAv~ly~~AL~i~e~~~G~~-------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~-----I~~----- 314 (508)
T KOG1840|consen 253 SLG-KYDEAVNLYEEALTIREEVFGED-------HPAVAATLNNLAVLYYKQGKFAEAEEYCERALE-----IYE----- 314 (508)
T ss_pred Hhc-cHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH-----HHH-----
Confidence 999 55555555556666555544433 233466788899999999999999885554442 100
Q ss_pred HHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcch
Q 000322 1172 SDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESL 1251 (1670)
Q Consensus 1172 sKi~~YLt~sDR~~AWL~~iYllrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ndesl 1251 (1670)
+ ++.+...+=.+-|+. .+.++...+...++..+ +.-|+..|....+...
T Consensus 315 -~--~~~~~~~~v~~~l~~---------~~~~~~~~~~~Eea~~l------------------~q~al~i~~~~~g~~~- 363 (508)
T KOG1840|consen 315 -K--LLGASHPEVAAQLSE---------LAAILQSMNEYEEAKKL------------------LQKALKIYLDAPGEDN- 363 (508)
T ss_pred -H--hhccChHHHHHHHHH---------HHHHHHHhcchhHHHHH------------------HHHHHHHHHhhccccc-
Confidence 0 122222221112222 23344444444444443 3333333332122111
Q ss_pred hhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CC-chhH-HHHHHHHhhcccCCccHHHHHHHH
Q 000322 1252 EKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLY--------PS-CLEL-VLMKARLQKHDFGDLSSVGFEEAL 1321 (1670)
Q Consensus 1252 a~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~--------P~-d~eL-~L~AAyL~~K~m~~~A~svle~AL 1321 (1670)
-....++-|+-+.|...+..++|.++|.++++.- +. ...| .|..+|.+.++ ...|...|++++
T Consensus 364 ------~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~-~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 364 ------VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKK-YEEAEQLFEEAK 436 (508)
T ss_pred ------hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence 1334566677777777889999999999999865 22 3445 88889988887 888999999999
Q ss_pred HhCCCCCc----hHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000322 1322 IKWPKGVP----GIQCIWNQYVEYALQNGRHDFAAELMDR 1357 (1670)
Q Consensus 1322 ~~~PkNa~----g~~caW~QLIq~al~~en~d~Ai~Lc~~ 1357 (1670)
.+- +... .......-|+...-+.|+++.|++|...
T Consensus 437 ~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~ 475 (508)
T KOG1840|consen 437 DIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEK 475 (508)
T ss_pred HHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 887 3322 4566666788888899999999999876
No 103
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00095 Score=77.43 Aligned_cols=114 Identities=11% Similarity=0.105 Sum_probs=98.2
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHH------HHHhcCCCcccchhh
Q 000322 1030 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWL------MYINSRTPLNHRLDA 1103 (1670)
Q Consensus 1030 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~Lwl------mYInsr~slddrl~~ 1103 (1670)
...+....-|+.-|..||++++=|..|+.+|+..+.-..+...|.+|+++.|+|-.++. ||.... + +
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~-~------~ 208 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQ-Q------M 208 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC-c------c
Confidence 44677888899999999999999999999999999999999999999999999999544 444432 1 3
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000322 1104 YDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1104 YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1158 (1670)
-.+|..+|.++.+.. ++. ...+.+|.--+.++|+|..|+.++..|+.
T Consensus 209 ta~a~~ll~~al~~D-~~~-------iral~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 209 TAKARALLRQALALD-PAN-------IRALSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred cHHHHHHHHHHHhcC-Ccc-------HHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 378888998888877 566 88999999999999999999999999997
No 104
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.44 E-value=0.0017 Score=66.78 Aligned_cols=117 Identities=25% Similarity=0.204 Sum_probs=88.6
Q ss_pred hcCHHHHHHHHHHHHHhCCCch--hH-HH--HHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCCh
Q 000322 1274 LNGLECSMNLLEKYIKLYPSCL--EL-VL--MKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRH 1348 (1670)
Q Consensus 1274 LEDse~A~~LfdklLk~~P~d~--eL-~L--~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~ 1348 (1670)
.++...+..+++.+++.+|... .+ .| ...++..++ .++|...|+.++...|+. .+..-+++.|....+..|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~-~~~A~~~l~~~~~~~~d~-~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGD-YDEAKAALEKALANAPDP-ELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhhCCCH-HHHHHHHHHHHHHHHHcCCH
Confidence 4588999999999999999992 22 33 334444444 889999999999998666 44555788899999999999
Q ss_pred HHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHH
Q 000322 1349 DFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLA 1428 (1670)
Q Consensus 1349 d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaA 1428 (1670)
++|+.++.. .. +..+.+. +..++||+|.. +|++++|..+
T Consensus 102 d~Al~~L~~------------------~~----------~~~~~~~-----------~~~~~Gdi~~~--~g~~~~A~~~ 140 (145)
T PF09976_consen 102 DEALATLQQ------------------IP----------DEAFKAL-----------AAELLGDIYLA--QGDYDEARAA 140 (145)
T ss_pred HHHHHHHHh------------------cc----------CcchHHH-----------HHHHHHHHHHH--CCCHHHHHHH
Confidence 998888733 00 0011122 23789999999 9999999999
Q ss_pred HHHHH
Q 000322 1429 IDAAL 1433 (1670)
Q Consensus 1429 YDKAL 1433 (1670)
|++||
T Consensus 141 y~~Al 145 (145)
T PF09976_consen 141 YQKAL 145 (145)
T ss_pred HHHhC
Confidence 99996
No 105
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.44 E-value=0.0011 Score=81.89 Aligned_cols=183 Identities=13% Similarity=0.078 Sum_probs=129.8
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhccc-CCccHHHHHHHHHhCCCCCchHHHHHHHHHHH
Q 000322 1263 FAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDF-GDLSSVGFEEALIKWPKGVPGIQCIWNQYVEY 1341 (1670)
Q Consensus 1263 fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m-~~~A~svle~AL~~~PkNa~g~~caW~QLIq~ 1341 (1670)
=|......++..||.-+|+=+|+.+++..|++++.|++.-..+...- -..|+.+|+++|+++|+|-. +-+-|+-.
T Consensus 287 dPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nle----aLmaLAVS 362 (579)
T KOG1125|consen 287 DPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLE----ALMALAVS 362 (579)
T ss_pred ChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHH----HHHHHHHH
Confidence 34443344456888888988999999999999999998888766653 45788999999999999999 76677777
Q ss_pred HHHcCChHHHHHHHHHHHHhhhhccc-ccccchhhhcccCCCCCC---------------CCCCCCCcccccccccchhh
Q 000322 1342 ALQNGRHDFAAELMDRWFHSVWKVQY-SQVEISDPLVADMSHSSP---------------ESTSTSDPEFSVSNRNQMDV 1405 (1670)
Q Consensus 1342 al~~en~d~Ai~Lc~~ff~gia~~Q~-~~deALDaLrkgns~i~~---------------es~s~~vSDfy~~~~~q~d~ 1405 (1670)
...++.-..|...+..|...-+.+.. ....--+.+..+.+.... +....+-+|++
T Consensus 363 ytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ--------- 433 (579)
T KOG1125|consen 363 YTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQ--------- 433 (579)
T ss_pred HhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHH---------
Confidence 88888888999999999877555544 111000000000000000 00112456655
Q ss_pred HHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhh
Q 000322 1406 MFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISW 1467 (1670)
Q Consensus 1406 ~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~ 1467 (1670)
.-||.+||- .|.+++|...|+.||.-+|.+ .-.||.+-.-|.--. ..+|.+++
T Consensus 434 --~~LGVLy~l--s~efdraiDcf~~AL~v~Pnd--~~lWNRLGAtLAN~~---~s~EAIsA 486 (579)
T KOG1125|consen 434 --SGLGVLYNL--SGEFDRAVDCFEAALQVKPND--YLLWNRLGATLANGN---RSEEAISA 486 (579)
T ss_pred --hhhHHHHhc--chHHHHHHHHHHHHHhcCCch--HHHHHHhhHHhcCCc---ccHHHHHH
Confidence 566777776 999999999999999999999 999999998877533 23444555
No 106
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.43 E-value=0.0012 Score=62.90 Aligned_cols=96 Identities=18% Similarity=0.121 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCH---
Q 000322 1011 NEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS---EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY--- 1084 (1670)
Q Consensus 1011 ~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtS---aeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY--- 1084 (1670)
.+.++..|..++.+ |+++.|...|..+++.+|++ +.+++.++.+|...+...++.++|+.+++..|++.
T Consensus 2 ~~~~~~~~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 76 (119)
T TIGR02795 2 EEAYYDAALLVLKA-----GDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAP 76 (119)
T ss_pred cHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCccc
Confidence 35677788888777 45799999999999999987 68999999999999999999999999999998852
Q ss_pred ----HHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCC
Q 000322 1085 ----ALWLMYINSRTPLNHRLDAYDAALSVLCRCASASD 1119 (1670)
Q Consensus 1085 ----~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~ 1119 (1670)
.++.+|...+ .+++|+..|.++...+|
T Consensus 77 ~~~~~~~~~~~~~~--------~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 77 DALLKLGMSLQELG--------DKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHHHHHHHhC--------ChHHHHHHHHHHHHHCc
Confidence 1677888877 88999999999999884
No 107
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.42 E-value=0.0014 Score=56.40 Aligned_cols=91 Identities=12% Similarity=0.173 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhh
Q 000322 1052 LWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASA 1127 (1670)
Q Consensus 1052 aWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa 1127 (1670)
+|+.++.+|...+...++...|+++++..|.+.. ++.+|...+ .+++|+..|.+..... +..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~a~~~~~~~~~~~-~~~----- 67 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLG--------KYEEALEDYEKALELD-PDN----- 67 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhCC-Ccc-----
Confidence 6888999999999999999999999999998744 667777776 8899999998888877 443
Q ss_pred hhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000322 1128 CILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1128 ~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1158 (1670)
.+++..+..++...|++++|+..+.+...
T Consensus 68 --~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 68 --AKAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred --hhHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 48899999999999999999997776653
No 108
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.003 Score=75.86 Aligned_cols=291 Identities=15% Similarity=0.094 Sum_probs=191.3
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHH
Q 000322 1027 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDA 1106 (1670)
Q Consensus 1027 n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~Ydk 1106 (1670)
.+...|..||..|..|++..|.+++.|.--+..|+..+.-+++.--.++.|++.|+-.+ -..++..|-.
T Consensus 60 yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k-----------~~~r~~~c~~ 128 (486)
T KOG0550|consen 60 YKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSK-----------GQLREGQCHL 128 (486)
T ss_pred HHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccc-----------cccchhhhhh
Confidence 34567999999999999999999999999999988888777777778888888876554 1223446666
Q ss_pred HHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchh
Q 000322 1107 ALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIF 1186 (1670)
Q Consensus 1107 AI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~A 1186 (1670)
|+..+....... .+. +.+..-+|+.++.++-+ .. +. ..
T Consensus 129 a~~~~i~A~~~~-~~~-------------------~~~~~anal~~~~~~~~--s~--s~--------------~p---- 166 (486)
T KOG0550|consen 129 ALSDLIEAEEKL-KSK-------------------QAYKAANALPTLEKLAP--SH--SR--------------EP---- 166 (486)
T ss_pred hhHHHHHHHHHh-hhh-------------------hhhHHhhhhhhhhcccc--cc--cC--------------Cc----
Confidence 666665544433 221 11123344444333332 11 11 01
Q ss_pred hHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHH
Q 000322 1187 WVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVN 1266 (1670)
Q Consensus 1187 WL~~iYllrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN 1266 (1670)
-...|+.|-...|+..+...+|..+ ...+++.++.++.++.--
T Consensus 167 -----ac~~a~~lka~cl~~~~~~~~a~~e---a~~ilkld~~n~~al~vr----------------------------- 209 (486)
T KOG0550|consen 167 -----ACFKAKLLKAECLAFLGDYDEAQSE---AIDILKLDATNAEALYVR----------------------------- 209 (486)
T ss_pred -----hhhHHHHhhhhhhhhcccchhHHHH---HHHHHhcccchhHHHHhc-----------------------------
Confidence 1233455566677788888888888 888899999999888532
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCchhH---HHHHHHHhh----------cccCCccHHHHHHHHHhCCCCCc-hHH
Q 000322 1267 HIWCMAVLNGLECSMNLLEKYIKLYPSCLEL---VLMKARLQK----------HDFGDLSSVGFEEALIKWPKGVP-GIQ 1332 (1670)
Q Consensus 1267 ~IR~lI~LEDse~A~~LfdklLk~~P~d~eL---~L~AAyL~~----------K~m~~~A~svle~AL~~~PkNa~-g~~ 1332 (1670)
.+++.-+.+.+.++.-|.+.|.+.|.+-+. .+..-.|+. ++.-.+|-..|.+||.++|+|.. ...
T Consensus 210 -g~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak 288 (486)
T KOG0550|consen 210 -GLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK 288 (486)
T ss_pred -ccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence 123333335666667777777777777666 111111211 11133566889999999999998 666
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHH
Q 000322 1333 CIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNL 1412 (1670)
Q Consensus 1333 caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD 1412 (1670)
|-|++-.- -++-++..+|+.-|.. |+. + .+-| +-++|--
T Consensus 289 lY~nra~v-~~rLgrl~eaisdc~~--------------Al~--------i---------D~sy---------ikall~r 327 (486)
T KOG0550|consen 289 LYGNRALV-NIRLGRLREAISDCNE--------------ALK--------I---------DSSY---------IKALLRR 327 (486)
T ss_pred HHHHhHhh-hcccCCchhhhhhhhh--------------hhh--------c---------CHHH---------HHHHHHH
Confidence 66665443 4567788888888854 221 1 1112 1277777
Q ss_pred HHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHH
Q 000322 1413 SLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHA 1449 (1670)
Q Consensus 1413 ~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYA 1449 (1670)
+.+.++.++++||..-|++|++..-+-.....|++=.
T Consensus 328 a~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~ 364 (486)
T KOG0550|consen 328 ANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQ 364 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence 7888889999999999999999888754577777644
No 109
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.35 E-value=0.0064 Score=75.57 Aligned_cols=244 Identities=20% Similarity=0.111 Sum_probs=135.0
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHH-HHHhhc-cchHHHhh
Q 000322 1129 ILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY-LVIYRK-LPDAVLQL 1206 (1670)
Q Consensus 1129 iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iY-llrYrv-LPGn~y~q 1206 (1670)
.+-++..++..|..+|+|++|+. +...|+.- -|..|- ..| +++=.. -.|.+|+.
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~----l~k~Al~~-------------------l~k~~G-~~hl~va~~l~~~a~~y~~ 253 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEP----LCKQALRI-------------------LEKTSG-LKHLVVASMLNILALVYRS 253 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHH----HHHHHHHH-------------------HHHccC-ccCHHHHHHHHHHHHHHHH
Confidence 38888889999999999999998 44322211 000111 111 111111 25666777
Q ss_pred hhhhhhhhccCCCCcccc--------hhhHHHHHHHHHHHHHHHhhhcCCcchhhhh-------hhc----hhhHhHHHH
Q 000322 1207 LECEKELFAIDWPPVQLE--------DDEKQRAIKLIEMAVNSVELYSNGESLEKET-------NLR----SAHCFAVNH 1267 (1670)
Q Consensus 1207 ~e~~KEAf~I~W~y~~vl--------kdEPdnalAL~smA~dYY~~~~ndesla~~~-------~~k----t~~~fKLN~ 1267 (1670)
.++.+||..+ |...+ ++.|.-+..+.++|+-||+. |+-.-+... .++ .....+..+
T Consensus 254 ~~k~~eAv~l---y~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~--GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l 328 (508)
T KOG1840|consen 254 LGKYDEAVNL---YEEALTIREEVFGEDHPAVAATLNNLAVLYYKQ--GKFAEAEEYCERALEIYEKLLGASHPEVAAQL 328 (508)
T ss_pred hccHHHHHHH---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc--CChHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 7777776666 65554 45889999999999888874 433322222 011 111111111
Q ss_pred ---HHHHHHhcCHHHHHHHHHHHHHhCC---Cchh--H-----HHHHHHHhhcccCCccHHHHHHHHHhC----CCCCch
Q 000322 1268 ---IWCMAVLNGLECSMNLLEKYIKLYP---SCLE--L-----VLMKARLQKHDFGDLSSVGFEEALIKW----PKGVPG 1330 (1670)
Q Consensus 1268 ---IR~lI~LEDse~A~~LfdklLk~~P---~d~e--L-----~L~AAyL~~K~m~~~A~svle~AL~~~----PkNa~g 1330 (1670)
...+...++.++|..|+.++++.+- .+.+ + -|...|+.+.+ ..+|...|++|+++. =+...+
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk-~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGK-YKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHhcccCcChh
Confidence 1111113366777777766666542 2222 2 33334444443 566777777777665 222223
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHH
Q 000322 1331 IQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYL 1410 (1670)
Q Consensus 1331 ~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~L 1410 (1670)
..-.-+||.....+.+++..|-++..+ +.+++ +.-.+ ..-|++|.|.
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~--------------~~~i~-~~~g~------------------~~~~~~~~~~ 454 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEE--------------AKDIM-KLCGP------------------DHPDVTYTYL 454 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHH--------------HHHHH-HHhCC------------------CCCchHHHHH
Confidence 222333555544556666666555533 44444 22111 1225677999
Q ss_pred HH--HHHHhhhcCHHHHHHHHHHHHhhcc
Q 000322 1411 NL--SLHRLLQNDWNEARLAIDAALKAAA 1437 (1670)
Q Consensus 1411 GD--~L~q~Lqg~~~EAfaAYDKALkanp 1437 (1670)
|+ .|-. +|++++|+..-++++.|..
T Consensus 455 nL~~~Y~~--~g~~e~a~~~~~~~~~~~~ 481 (508)
T KOG1840|consen 455 NLAALYRA--QGNYEAAEELEEKVLNARE 481 (508)
T ss_pred HHHHHHHH--cccHHHHHHHHHHHHHHHH
Confidence 99 4555 9999999999999997765
No 110
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0034 Score=77.60 Aligned_cols=226 Identities=15% Similarity=0.166 Sum_probs=153.4
Q ss_pred hhhhc-cccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCC
Q 000322 1003 KLKQV-ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNE 1081 (1670)
Q Consensus 1003 ~le~~-~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP 1081 (1670)
+|... |...-.|+..+.-|++-+.+ ..|...|++|-.+||+=..+|..|++.|...++-+.+...|.+|.++=|
T Consensus 303 ~LV~~yP~~a~sW~aVg~YYl~i~k~-----seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~ 377 (611)
T KOG1173|consen 303 KLVDLYPSKALSWFAVGCYYLMIGKY-----SEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMP 377 (611)
T ss_pred HHHHhCCCCCcchhhHHHHHHHhcCc-----HHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhcc
Confidence 34333 56667788888888877544 8888888888888888888888888888888888888888888888888
Q ss_pred CCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHH-HhcCHHHHHHHHHhh
Q 000322 1082 GSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFC-MSGNTEKAIQRISRL 1156 (1670)
Q Consensus 1082 ~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~-qSGnydKAI~ti~rL 1156 (1670)
+.+. ++.-|-... .+..|-.+|.++.+..|.|- +.+--+-+.. ..+.|.+|+. +
T Consensus 378 G~hlP~LYlgmey~~t~--------n~kLAe~Ff~~A~ai~P~Dp---------lv~~Elgvvay~~~~y~~A~~----~ 436 (611)
T KOG1173|consen 378 GCHLPSLYLGMEYMRTN--------NLKLAEKFFKQALAIAPSDP---------LVLHELGVVAYTYEEYPEALK----Y 436 (611)
T ss_pred CCcchHHHHHHHHHHhc--------cHHHHHHHHHHHHhcCCCcc---------hhhhhhhheeehHhhhHHHHH----H
Confidence 8776 555555555 67888888888888775553 2222233333 3667888877 5
Q ss_pred cccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHH
Q 000322 1157 LIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIE 1236 (1670)
Q Consensus 1157 Eq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~s 1236 (1670)
++.++.- +. ........|-.- ...+|..|-..++..||+.. +++++...|.++-.+.+
T Consensus 437 f~~~l~~----------ik---~~~~e~~~w~p~------~~NLGH~~Rkl~~~~eAI~~---~q~aL~l~~k~~~~~as 494 (611)
T KOG1173|consen 437 FQKALEV----------IK---SVLNEKIFWEPT------LNNLGHAYRKLNKYEEAIDY---YQKALLLSPKDASTHAS 494 (611)
T ss_pred HHHHHHH----------hh---hccccccchhHH------HHhHHHHHHHHhhHHHHHHH---HHHHHHcCCCchhHHHH
Confidence 5533311 11 112222244332 22356666666777888777 77777777777666655
Q ss_pred HHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhh
Q 000322 1237 MAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQK 1306 (1670)
Q Consensus 1237 mA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~ 1306 (1670)
.| -++..++.++.|++-|.+.|.+.|.|.-+ .|....|+.
T Consensus 495 ig------------------------------~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 495 IG------------------------------YIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HH------------------------------HHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 42 33445778999999999999999999877 555555443
No 111
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.24 E-value=0.001 Score=76.15 Aligned_cols=140 Identities=14% Similarity=0.116 Sum_probs=105.1
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhccc--CCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Q 000322 1266 NHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDF--GDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYAL 1343 (1670)
Q Consensus 1266 N~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m--~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al 1343 (1670)
.+|+++-..++.+.|+.+|.++++..+.+.+|++..|.|+.... +..|+.+||.++..-|++.. .|+.||.+++
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~----~~~~Y~~~l~ 81 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD----FWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH----HHHHHHHHHH
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHH
Confidence 44666555778999999999999877788999999999987743 33489999999999999999 9999999999
Q ss_pred HcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHH--HHHHhhhcC
Q 000322 1344 QNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNL--SLHRLLQND 1421 (1670)
Q Consensus 1344 ~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD--~L~q~Lqg~ 1421 (1670)
..++.+.|..|.++++..++.... + ..||+ +-|+...|+
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~-----------------------------------~----~~iw~~~i~fE~~~Gd 122 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQ-----------------------------------S----KKIWKKFIEFESKYGD 122 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHH-----------------------------------C----HHHHHHHHHHHHHHS-
T ss_pred HhCcHHHHHHHHHHHHHhcCchhH-----------------------------------H----HHHHHHHHHHHHHcCC
Confidence 999999999999773322111110 1 33444 556667899
Q ss_pred HHHHHHHHHHHHhhccC-CcHHHHHHHH
Q 000322 1422 WNEARLAIDAALKAAAS-EHFKHCVREH 1448 (1670)
Q Consensus 1422 ~~EAfaAYDKALkanp~-N~~i~cLNNY 1448 (1670)
++.....++++..+-|. +.+...++.|
T Consensus 123 l~~v~~v~~R~~~~~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 123 LESVRKVEKRAEELFPEDNSLELFSDRY 150 (280)
T ss_dssp HHHHHHHHHHHHHHTTTS-HHHHHHCCT
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence 99999999999999985 5455555555
No 112
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.23 E-value=0.0028 Score=81.24 Aligned_cols=178 Identities=13% Similarity=0.114 Sum_probs=117.6
Q ss_pred CHHHHHHHHHHHHHhCCCchhHHHHHHHH-hhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHH
Q 000322 1276 GLECSMNLLEKYIKLYPSCLELVLMKARL-QKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAEL 1354 (1670)
Q Consensus 1276 Dse~A~~LfdklLk~~P~d~eL~L~AAyL-~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~L 1354 (1670)
-..+++.=+..++.-||.+++.....+++ +..+-.++|...|+.+++..|++.. +|.-++....+.+.+++|...
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~----a~~~~a~~L~~~~~~eeA~~~ 142 (694)
T PRK15179 67 KPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSE----AFILMLRGVKRQQGIEAGRAE 142 (694)
T ss_pred chHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHHhccHHHHHHH
Confidence 34455555566778888888884444443 3333378888888888888888888 888888888888888888888
Q ss_pred HHHHH------------Hhhhhccc-ccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcC
Q 000322 1355 MDRWF------------HSVWKVQY-SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQND 1421 (1670)
Q Consensus 1355 c~~ff------------~gia~~Q~-~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~ 1421 (1670)
+++.+ ++++-.+. +.++|.+++++...+.+ |+ .. ++++.+.--.-.|+
T Consensus 143 ~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p---------~~-----~~-----~~~~~a~~l~~~G~ 203 (694)
T PRK15179 143 IELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHP---------EF-----EN-----GYVGWAQSLTRRGA 203 (694)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCC---------Cc-----HH-----HHHHHHHHHHHcCC
Confidence 88833 33333333 88888888887754421 10 11 55665444333799
Q ss_pred HHHHHHHHHHHHhhccCCcHHHHHHHHHHHHh--------c--CCCCCCcccchhhhHHHHHHHHhh
Q 000322 1422 WNEARLAIDAALKAAASEHFKHCVREHAMLLL--------I--NESEPKEGAPISWQLKLLNSYLDR 1478 (1670)
Q Consensus 1422 ~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS--------~--e~~dL~KAeqMS~~~KtVsTYLDT 1478 (1670)
.++|.++|++|+....+. ..-++||+.=|. + ++.--.+..++-.+.++|--|=|+
T Consensus 204 ~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 204 LWRARDVLQAGLDAIGDG--ARKLTRRLVDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHHHHHHhhCcc--hHHHHHHHHHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 999999999999999987 566666654332 2 333344445555545566555554
No 113
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.19 E-value=0.0027 Score=77.47 Aligned_cols=134 Identities=15% Similarity=0.055 Sum_probs=107.0
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHH
Q 000322 1012 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYI 1091 (1670)
Q Consensus 1012 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYI 1091 (1670)
..|--.|..++-- +.+|.|+..|.-.+...|+|+-.|-....++...++..++.++|++|+.+.|++.+||.+|.
T Consensus 307 aa~YG~A~~~~~~-----~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 307 AAQYGRALQTYLA-----GQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred HHHHHHHHHHHHh-----cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 4555556555544 44699999999999999999999999999999999999999999999999999999666555
Q ss_pred hcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCC
Q 000322 1092 NSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSN 1164 (1670)
Q Consensus 1092 nsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~ 1164 (1670)
+--...+ .+.+||.+|-+..... |+. -+.|.+|.+-|..+|+..+|..... |.-+..|.
T Consensus 382 ~all~~g----~~~eai~~L~~~~~~~-p~d-------p~~w~~LAqay~~~g~~~~a~~A~A--E~~~~~G~ 440 (484)
T COG4783 382 QALLKGG----KPQEAIRILNRYLFND-PED-------PNGWDLLAQAYAELGNRAEALLARA--EGYALAGR 440 (484)
T ss_pred HHHHhcC----ChHHHHHHHHHHhhcC-CCC-------chHHHHHHHHHHHhCchHHHHHHHH--HHHHhCCC
Confidence 4332222 6789999998888888 454 7999999999999999988876443 33335554
No 114
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.18 E-value=0.0037 Score=71.74 Aligned_cols=98 Identities=11% Similarity=0.032 Sum_probs=85.6
Q ss_pred cHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH
Q 000322 1010 SNEQCVEMALLI-LNQDANKLEGMKKALSLLSRALEADPTS---EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1085 (1670)
Q Consensus 1010 d~qlWLelAl~~-Lnq~~n~~g~ydAALdLLsrALEINPtS---aeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~ 1085 (1670)
+...|...|+.+ +.. ++|+.|+..|...++.+|++ +.+||.++.+|+..+...++...|+++|+..|++.+
T Consensus 141 ~e~~~Y~~A~~l~~~~-----~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~ 215 (263)
T PRK10803 141 DANTDYNAAIALVQDK-----SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK 215 (263)
T ss_pred CHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence 568888888876 444 56799999999999999998 689999999999999999999999999999998755
Q ss_pred -------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCC
Q 000322 1086 -------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD 1121 (1670)
Q Consensus 1086 -------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~D 1121 (1670)
++..|...+ .+++|+.+|++..+.+ |+
T Consensus 216 ~~dAl~klg~~~~~~g--------~~~~A~~~~~~vi~~y-P~ 249 (263)
T PRK10803 216 AADAMFKVGVIMQDKG--------DTAKAKAVYQQVIKKY-PG 249 (263)
T ss_pred hhHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHC-cC
Confidence 556677777 8899999999999999 55
No 115
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.16 E-value=0.023 Score=72.54 Aligned_cols=328 Identities=18% Similarity=0.102 Sum_probs=172.8
Q ss_pred cceecCCccccccccccchhhhhhhhhccccH--HHHHHHHHHHhcccc-cc---hhhHHHHHHHHHHHHHhCCCCHHHH
Q 000322 980 RIECIGSWNRQSSFFRSRNGVLNKLKQVELSN--EQCVEMALLILNQDA-NK---LEGMKKALSLLSRALEADPTSEILW 1053 (1670)
Q Consensus 980 ri~~~~~~~~~~rYF~~~~d~i~~le~~~~d~--qlWLelAl~~Lnq~~-n~---~g~ydAALdLLsrALEINPtSaeaW 1053 (1670)
.++-++.+.+-.-|=+.--++. ..+.+-..- ++.+-.|++-..... ++ .....+++..|.+|++.+|+++-+.
T Consensus 403 c~e~l~~~eegldYA~kai~~~-~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~i 481 (799)
T KOG4162|consen 403 CIERLKLVEEGLDYAQKAISLL-GGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVI 481 (799)
T ss_pred HHhchhhhhhHHHHHHHHHHHh-hhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHH
Confidence 4555544444444544222222 233333333 444444444444433 33 3447899999999999999999999
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCc---c--
Q 000322 1054 ITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDE---M-- 1123 (1670)
Q Consensus 1054 y~yl~lY~~~~~~eea~emlekAVelnP~NY~-----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr---~-- 1123 (1670)
|+++.-|.-+.+-..+.++++.|.++++.... |++..--++ .|..|+.+......-+ +++ +
T Consensus 482 f~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~k--------r~~~Al~vvd~al~E~-~~N~~l~~~ 552 (799)
T KOG4162|consen 482 FYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQK--------RLKEALDVVDAALEEF-GDNHVLMDG 552 (799)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh--------hhHHHHHHHHHHHHHh-hhhhhhchh
Confidence 99999998888888899999999999877666 555555566 4566666655544444 231 0
Q ss_pred --hh------hhhhHHHHHHHHHHHHHhcCHHHHHHHH------HhhcccccCCCCcccchHHHHHHhhccCCcchh---
Q 000322 1124 --HA------SACILDLFLQMLQCFCMSGNTEKAIQRI------SRLLIPATGSNDRHSLFLSDILTCLTISDKLIF--- 1186 (1670)
Q Consensus 1124 --~~------Sa~iLDILL~LvqLY~qSGnydKAI~ti------~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~A--- 1186 (1670)
|. ---.+|....++.|.-...-++.++..+ .++-. +...... .++.++-..-+-....+.+
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~l-a~~q~~~-a~s~sr~ls~l~a~~~~~~~se 630 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHL-ALSQPTD-AISTSRYLSSLVASQLKSAGSE 630 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhccccc-Ccccccc-cchhhHHHHHHHHhhhhhcccc
Confidence 00 0133666777776666333333332211 11110 0000111 1111111111111111111
Q ss_pred ---------------hHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcch
Q 000322 1187 ---------------WVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESL 1251 (1670)
Q Consensus 1187 ---------------WL~~iYllrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ndesl 1251 (1670)
|+.- ..--.+-++.++-.+-.++++.. .....+.+|.-+......| ..+.. .++..-
T Consensus 631 ~~Lp~s~~~~~~~~~~~~~---~~lwllaa~~~~~~~~~~~a~~C---L~Ea~~~~~l~~~~~~~~G-~~~~~-~~~~~E 702 (799)
T KOG4162|consen 631 LKLPSSTVLPGPDSLWYLL---QKLWLLAADLFLLSGNDDEARSC---LLEASKIDPLSASVYYLRG-LLLEV-KGQLEE 702 (799)
T ss_pred cccCcccccCCCCchHHHH---HHHHHHHHHHHHhcCCchHHHHH---HHHHHhcchhhHHHHHHhh-HHHHH-HHhhHH
Confidence 2111 11111234445555555555443 3344444555555554433 22222 222221
Q ss_pred hhhhh--------hchhhHhHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCchhHHHHHHHHhhccc-CCccHHHHHHH
Q 000322 1252 EKETN--------LRSAHCFAVNHIWCMAVLN--GLECSMNLLEKYIKLYPSCLELVLMKARLQKHDF-GDLSSVGFEEA 1320 (1670)
Q Consensus 1252 a~~~~--------~kt~~~fKLN~IR~lI~LE--Dse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m-~~~A~svle~A 1320 (1670)
+.+.. ..+...+.+ ..++...| ..-+.+.++.-+++..|.|.+.|.+..-+.++.+ ...|..-|+.|
T Consensus 703 A~~af~~Al~ldP~hv~s~~Al--a~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 703 AKEAFLVALALDPDHVPSMTAL--AELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHHhcCCCCcHHHHHH--HHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 11110 011111111 12222233 4555566999999999999999999999877775 66888999999
Q ss_pred HHhCCCCCc
Q 000322 1321 LIKWPKGVP 1329 (1670)
Q Consensus 1321 L~~~PkNa~ 1329 (1670)
++.++.++-
T Consensus 781 ~qLe~S~PV 789 (799)
T KOG4162|consen 781 LQLEESNPV 789 (799)
T ss_pred HhhccCCCc
Confidence 999998875
No 116
>PRK11906 transcriptional regulator; Provisional
Probab=97.09 E-value=0.0088 Score=73.20 Aligned_cols=134 Identities=12% Similarity=0.056 Sum_probs=102.5
Q ss_pred cccH---HHHHHHHHHHhcccc--cchhhHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHhC----C-C----CchHH
Q 000322 1008 ELSN---EQCVEMALLILNQDA--NKLEGMKKALSLLSRAL---EADPTSEILWITYLLIFYSN----T-N----SVGKD 1070 (1670)
Q Consensus 1008 ~~d~---qlWLelAl~~Lnq~~--n~~g~ydAALdLLsrAL---EINPtSaeaWy~yl~lY~~~----~-~----~eea~ 1070 (1670)
|.+. +.||..++.+--... ...+..++|+.+|.+|+ ++||.-+.+|..++..+..+ . . -.++.
T Consensus 245 ~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~ 324 (458)
T PRK11906 245 KQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKAL 324 (458)
T ss_pred CCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 4555 788777644444332 34567899999999999 99999999988887776644 1 1 23477
Q ss_pred HHHHHHHhhCCCCHH-HHHHH---HhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCH
Q 000322 1071 DMFSYSVKHNEGSYA-LWLMY---INSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNT 1146 (1670)
Q Consensus 1071 emlekAVelnP~NY~-LwlmY---Insr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGny 1146 (1670)
+.-++||+++|.+-. +|.+= ...+ .++.|+..|+++..-+ |+- -+++++..-+..+.|+.
T Consensus 325 ~~A~rAveld~~Da~a~~~~g~~~~~~~--------~~~~a~~~f~rA~~L~-Pn~-------A~~~~~~~~~~~~~G~~ 388 (458)
T PRK11906 325 ELLDYVSDITTVDGKILAIMGLITGLSG--------QAKVSHILFEQAKIHS-TDI-------ASLYYYRALVHFHNEKI 388 (458)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhhc--------chhhHHHHHHHHhhcC-Ccc-------HHHHHHHHHHHHHcCCH
Confidence 899999999999888 44332 2333 4689999999888888 565 89999999999999999
Q ss_pred HHHHHHHHhhc
Q 000322 1147 EKAIQRISRLL 1157 (1670)
Q Consensus 1147 dKAI~ti~rLE 1157 (1670)
+.|+..+++-+
T Consensus 389 ~~a~~~i~~al 399 (458)
T PRK11906 389 EEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHh
Confidence 99999888833
No 117
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.06 E-value=0.00075 Score=63.19 Aligned_cols=76 Identities=14% Similarity=0.225 Sum_probs=65.5
Q ss_pred hhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchh
Q 000322 1029 LEGMKKALSLLSRALEADPT--SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLD 1102 (1670)
Q Consensus 1029 ~g~ydAALdLLsrALEINPt--SaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~ 1102 (1670)
.++|+.|+.+|.++++.+|+ +..+|+.++..|++.++-..+.+.+++ .+++|.+.. ++..|+..+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~-------- 72 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLG-------- 72 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT--------
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhC--------
Confidence 36799999999999999996 578899999999999999999999999 788887755 667788888
Q ss_pred hHHHHHHHHHH
Q 000322 1103 AYDAALSVLCR 1113 (1670)
Q Consensus 1103 ~YdkAI~aLe~ 1113 (1670)
.|++||.+|++
T Consensus 73 ~y~eAi~~l~~ 83 (84)
T PF12895_consen 73 KYEEAIKALEK 83 (84)
T ss_dssp -HHHHHHHHHH
T ss_pred CHHHHHHHHhc
Confidence 99999999976
No 118
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.01 E-value=0.0019 Score=58.15 Aligned_cols=59 Identities=20% Similarity=0.265 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHH
Q 000322 1030 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWL 1088 (1670)
Q Consensus 1030 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~Lwl 1088 (1670)
++++.|+.++.++++++|+++.+|+.++.+|...+...++.+.|+++++++|++-..-.
T Consensus 9 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 9 EDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred CCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 56899999999999999999999999999999999999999999999999998877433
No 119
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.99 E-value=0.038 Score=71.07 Aligned_cols=345 Identities=11% Similarity=0.019 Sum_probs=175.8
Q ss_pred cccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC-------CchHHHHHHHHHhhC
Q 000322 1008 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN-------SVGKDDMFSYSVKHN 1080 (1670)
Q Consensus 1008 ~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~-------~eea~emlekAVeln 1080 (1670)
|+...+|++++...+.-... +....+..+|.+||- |-+++.+|.+|+.|++..++ .......|++|++.-
T Consensus 144 pl~~~lWl~Wl~d~~~mt~s--~~~~~v~~~~ekal~-dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~ 220 (881)
T KOG0128|consen 144 PLPPHLWLEWLKDELSMTQS--EERKEVEELFEKALG-DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSL 220 (881)
T ss_pred CCChHHHHHHHHHHHhhccC--cchhHHHHHHHHHhc-ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhh
Confidence 66679999999877766543 666889999999985 55899999999999987665 223568899998776
Q ss_pred CCCHH----HHHHHHhcCCCcccchhhHHH----HHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHH
Q 000322 1081 EGSYA----LWLMYINSRTPLNHRLDAYDA----ALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQR 1152 (1670)
Q Consensus 1081 P~NY~----LwlmYInsr~slddrl~~Ydk----AI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~t 1152 (1670)
-.-+. +|.||+... ..+.|.. .+.++.+..... -|. +.-+|-+.-+.--=+-..+..++++|.++
T Consensus 221 g~~~t~G~~~we~~~E~e-----~~~l~n~~~~qv~a~~~~el~~~-~D~-~~~~~~~~~~sk~h~~~~~~~~~~~a~~~ 293 (881)
T KOG0128|consen 221 GSHITEGAAIWEMYREFE-----VTYLCNVEQRQVIALFVRELKQP-LDE-DTRGWDLSEQSKAHVYDVETKKLDDALKN 293 (881)
T ss_pred hhhhcccHHHHHHHHHHH-----HHHHHhHHHHHHHHHHHHHHhcc-chh-hhhHHHHHHHHhcchHHHHhccHHHHHHH
Confidence 33333 999999987 2223333 444444433332 231 11111111111112233456788888888
Q ss_pred HHhhcccccCCCCcccchHHHHHHhhccCCcchh-----hHHHHH---HHHhhccchHHHhhhhhhhhhhccCCC----C
Q 000322 1153 ISRLLIPATGSNDRHSLFLSDILTCLTISDKLIF-----WVCCVY---LVIYRKLPDAVLQLLECEKELFAIDWP----P 1220 (1670)
Q Consensus 1153 i~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~A-----WL~~iY---llrYrvLPGn~y~q~e~~KEAf~I~W~----y 1220 (1670)
+..++... .... +.--.+.+.|+..-|-|+. -..-+| ..++..-++.|+...=-...-|.++=. +
T Consensus 294 l~~~~~~~--e~~~-q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~ 370 (881)
T KOG0128|consen 294 LAKILFKF--ERLV-QKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVH 370 (881)
T ss_pred HHHHHHHH--HHHh-hhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhccccccccccccccc
Confidence 77766511 1111 2222333333333333222 222222 222222233332221111111111000 1
Q ss_pred cccchhhHHHHHHHHHHHHHHHhhhcCCcch-----------------hhhhhhchhhHhHHHHHHHHHH-hcCHHHHHH
Q 000322 1221 VQLEDDEKQRAIKLIEMAVNSVELYSNGESL-----------------EKETNLRSAHCFAVNHIWCMAV-LNGLECSMN 1282 (1670)
Q Consensus 1221 ~~vlkdEPdnalAL~smA~dYY~~~~ndesl-----------------a~~~~~kt~~~fKLN~IR~lI~-LEDse~A~~ 1282 (1670)
...+... -....|++-|.=..+ -+.++. +......--.||++-....|.. -+.++.|..
T Consensus 371 ~ra~R~c-p~tgdL~~rallAle--R~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~ 447 (881)
T KOG0128|consen 371 PRAVRSC-PWTGDLWKRALLALE--RNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWE 447 (881)
T ss_pred chhhcCC-chHHHHHHHHHHHHH--hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHH
Confidence 1111111 111222221100000 000000 0000001113344433444433 337778888
Q ss_pred HHHHHHHh--CCCchhH-HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHH-HHHHHHHHHHHcCChHHHHHHHHHH
Q 000322 1283 LLEKYIKL--YPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQC-IWNQYVEYALQNGRHDFAAELMDRW 1358 (1670)
Q Consensus 1283 LfdklLk~--~P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~c-aW~QLIq~al~~en~d~Ai~Lc~~f 1358 (1670)
+|...+.. .+.+..+ +..--++...+..+.++.+|..++. ...+-.+ +|.+++++...-++...+..+.++
T Consensus 448 eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imt----y~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~- 522 (881)
T KOG0128|consen 448 ELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMT----YGGGSIAGKWLEAINLEREYGDGPSARKVLRK- 522 (881)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhcccc----CCcchHHHHHHHHHhHHHHhCCchhHHHHHHH-
Confidence 88887765 5555555 3333444444447888888877644 4444455 999999999999999998875544
Q ss_pred HHhhhhccc-ccccchhhhc
Q 000322 1359 FHSVWKVQY-SQVEISDPLV 1377 (1670)
Q Consensus 1359 f~gia~~Q~-~~deALDaLr 1377 (1670)
+|.+. ..+.+.+++.
T Consensus 523 ----ay~~~~~~~~~~ev~~ 538 (881)
T KOG0128|consen 523 ----AYSQVVDPEDALEVLE 538 (881)
T ss_pred ----HHhcCcCchhHHHHHH
Confidence 55555 3333444443
No 120
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.96 E-value=0.034 Score=67.39 Aligned_cols=159 Identities=13% Similarity=0.060 Sum_probs=90.3
Q ss_pred cccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHH-HHHHhCCCC-chHHHHHHHHHhhCCCCH
Q 000322 1008 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEAD-PTSEILWITYL-LIFYSNTNS-VGKDDMFSYSVKHNEGSY 1084 (1670)
Q Consensus 1008 ~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEIN-PtSaeaWy~yl-~lY~~~~~~-eea~emlekAVelnP~NY 1084 (1670)
++-+++=|..|-.+|.++ ++..|..+|.--=.-| .+.+.+-..|. ..|.+.+.+ ..++.|-..|+..+-.|-
T Consensus 416 ~la~dlei~ka~~~lk~~-----d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~ 490 (840)
T KOG2003|consen 416 ELAIDLEINKAGELLKNG-----DIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNA 490 (840)
T ss_pred hhhhhhhhhHHHHHHhcc-----CHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCH
Confidence 445567777787888774 4688888876544333 34444444454 444444433 236677777775553332
Q ss_pred HHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCC
Q 000322 1085 ALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSN 1164 (1670)
Q Consensus 1085 ~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~ 1164 (1670)
. ...|.+...=- --.|++|.++|-++.... +-|++.|+-+---+-..|+.+.|+.-+.+|-.--++
T Consensus 491 ~---a~~nkgn~~f~-ngd~dka~~~ykeal~nd--------asc~ealfniglt~e~~~~ldeald~f~klh~il~n-- 556 (840)
T KOG2003|consen 491 A---ALTNKGNIAFA-NGDLDKAAEFYKEALNND--------ASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN-- 556 (840)
T ss_pred H---HhhcCCceeee-cCcHHHHHHHHHHHHcCc--------hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh--
Confidence 2 12233321110 015799999996664432 234777777777788999999999966665531122
Q ss_pred CcccchHHHHHHhhccCCcchh
Q 000322 1165 DRHSLFLSDILTCLTISDKLIF 1186 (1670)
Q Consensus 1165 sE~~lSLsKi~~YLt~sDR~~A 1186 (1670)
+- +...+..-+|+.+.|...|
T Consensus 557 n~-evl~qianiye~led~aqa 577 (840)
T KOG2003|consen 557 NA-EVLVQIANIYELLEDPAQA 577 (840)
T ss_pred hH-HHHHHHHHHHHHhhCHHHH
Confidence 22 3444444455555555333
No 121
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.91 E-value=0.009 Score=57.00 Aligned_cols=96 Identities=16% Similarity=0.109 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCH-------HHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCc
Q 000322 1050 EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY-------ALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDE 1122 (1670)
Q Consensus 1050 aeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY-------~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr 1122 (1670)
+.++|..+..+...++-.++.+.|+++++..|++. .++..|...+ .|+.|+..|..+...++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~~~~~p~~~ 73 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQG--------KYADAAKAFLAVVKKYPKSP 73 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhc--------cHHHHHHHHHHHHHHCCCCC
Confidence 46789999999999999999999999999998762 2777888888 89999999999888763221
Q ss_pred chhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000322 1123 MHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1123 ~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1158 (1670)
...++++.+..+|...|++++|+..+.++..
T Consensus 74 -----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 74 -----KAPDALLKLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred -----cccHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 2267899999999999999999999988875
No 122
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.88 E-value=0.012 Score=62.14 Aligned_cols=106 Identities=10% Similarity=0.074 Sum_probs=79.3
Q ss_pred cccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCH
Q 000322 1008 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS---EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY 1084 (1670)
Q Consensus 1008 ~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtS---aeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY 1084 (1670)
+.....+..+|..+... |+++.|+..|.++++++|+. +.+|+.++.+|...+..+.+..+|++|++..|.+.
T Consensus 32 ~~~a~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 106 (172)
T PRK02603 32 AKEAFVYYRDGMSAQAD-----GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQP 106 (172)
T ss_pred hhhHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Confidence 34445666666666555 56799999999999998874 57999999999999999999999999999999887
Q ss_pred H----HHHHHHhcCC------CcccchhhHHHHHHHHHHhhhcC
Q 000322 1085 A----LWLMYINSRT------PLNHRLDAYDAALSVLCRCASAS 1118 (1670)
Q Consensus 1085 ~----LwlmYInsr~------slddrl~~YdkAI~aLe~las~~ 1118 (1670)
. ++.+|...+. .+...+..|++|++++.+..+..
T Consensus 107 ~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 107 SALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 7 5566665541 22333344677777777766655
No 123
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.85 E-value=0.014 Score=61.27 Aligned_cols=109 Identities=9% Similarity=-0.023 Sum_probs=82.4
Q ss_pred hhcccc--HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 000322 1005 KQVELS--NEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS---EILWITYLLIFYSNTNSVGKDDMFSYSVKH 1079 (1670)
Q Consensus 1005 e~~~~d--~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtS---aeaWy~yl~lY~~~~~~eea~emlekAVel 1079 (1670)
.+...+ ...|+.++..+... |+++.|+..|.+|+++.|+. +.+|+.++.+|...+..+++.++|++|++.
T Consensus 27 ~~~~~~~~a~~~~~~g~~~~~~-----g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 27 PTTSGEKEAFTYYRDGMSAQSE-----GEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred cCCchhHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344444 47778887777655 45799999999999998773 459999999999999999999999999999
Q ss_pred CCCCHH----HHHHHHhcC------CCcccchhhHHHHHHHHHHhhhcC
Q 000322 1080 NEGSYA----LWLMYINSR------TPLNHRLDAYDAALSVLCRCASAS 1118 (1670)
Q Consensus 1080 nP~NY~----LwlmYInsr------~slddrl~~YdkAI~aLe~las~~ 1118 (1670)
.|.+.. ++.+|.+.+ ..+...+..|++|+.+|++.....
T Consensus 102 ~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~ 150 (168)
T CHL00033 102 NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALA 150 (168)
T ss_pred CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhC
Confidence 988766 455555322 123333445678888888887777
No 124
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.82 E-value=0.0057 Score=71.30 Aligned_cols=99 Identities=16% Similarity=0.043 Sum_probs=78.6
Q ss_pred hHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHH
Q 000322 1261 HCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQY 1338 (1670)
Q Consensus 1261 ~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QL 1338 (1670)
..+|.. .--+...++.++|+..|.+++++.|+++-+ .=.++|++.. +-+.|+..++.||.++|.... +|
T Consensus 82 E~LK~e-GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg-~~~~AVkDce~Al~iDp~ysk----ay--- 152 (304)
T KOG0553|consen 82 ESLKNE-GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLG-EYEDAVKDCESALSIDPHYSK----AY--- 152 (304)
T ss_pred HHHHHH-HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhc-chHHHHHHHHHHHhcChHHHH----HH---
Confidence 334443 333344568889999999999999999888 5566666666 488888888999999888777 54
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhh
Q 000322 1339 VEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLL 1418 (1670)
Q Consensus 1339 Iq~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~L 1418 (1670)
+=||.+|+-
T Consensus 153 ---------------------------------------------------------------------~RLG~A~~~-- 161 (304)
T KOG0553|consen 153 ---------------------------------------------------------------------GRLGLAYLA-- 161 (304)
T ss_pred ---------------------------------------------------------------------HHHHHHHHc--
Confidence 557888888
Q ss_pred hcCHHHHHHHHHHHHhhccCC
Q 000322 1419 QNDWNEARLAIDAALKAAASE 1439 (1670)
Q Consensus 1419 qg~~~EAfaAYDKALkanp~N 1439 (1670)
.|+++||..||-|||..+|+|
T Consensus 162 ~gk~~~A~~aykKaLeldP~N 182 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDN 182 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCc
Confidence 999999999999999999999
No 125
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.81 E-value=0.0083 Score=72.41 Aligned_cols=112 Identities=18% Similarity=0.181 Sum_probs=95.5
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHH
Q 000322 1030 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1105 (1670)
Q Consensus 1030 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~Yd 1105 (1670)
++-.+|+.+|.++-.+=|+++.++..|+.+|-+-+.++.+.+++-....+-|.|.. |+.+||... -.+
T Consensus 572 ed~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtq--------f~e 643 (840)
T KOG2003|consen 572 EDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQ--------FSE 643 (840)
T ss_pred hCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhH--------HHH
Confidence 34478999999999999999999999999999999888888888888889999875 888999988 679
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Q 000322 1106 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1157 (1670)
Q Consensus 1106 kAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLE 1157 (1670)
+||..||+++--. |.. .-+-+..+-|+..+|||++|+.++..+-
T Consensus 644 kai~y~ekaaliq-p~~-------~kwqlmiasc~rrsgnyqka~d~yk~~h 687 (840)
T KOG2003|consen 644 KAINYFEKAALIQ-PNQ-------SKWQLMIASCFRRSGNYQKAFDLYKDIH 687 (840)
T ss_pred HHHHHHHHHHhcC-ccH-------HHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 9999999988776 553 4556677889999999999999776554
No 126
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.79 E-value=0.0042 Score=73.55 Aligned_cols=79 Identities=10% Similarity=0.058 Sum_probs=72.0
Q ss_pred hhhhccccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCC
Q 000322 1003 KLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG 1082 (1670)
Q Consensus 1003 ~le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~ 1082 (1670)
-|+..|.+.+.|+.+|.-++.. |+++.|+..|.+||+++|+.+.+|+.++.+|+..+...++..+|++|++++|+
T Consensus 28 Al~~~P~~~~a~~~~a~~~~~~-----g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 28 AIDLDPNNAELYADRAQANIKL-----GNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPG 102 (356)
T ss_pred HHHhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 4556688889999999988876 56799999999999999999999999999999999999999999999999999
Q ss_pred CHHH
Q 000322 1083 SYAL 1086 (1670)
Q Consensus 1083 NY~L 1086 (1670)
+..+
T Consensus 103 ~~~~ 106 (356)
T PLN03088 103 DSRF 106 (356)
T ss_pred CHHH
Confidence 9884
No 127
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.78 E-value=0.0055 Score=74.15 Aligned_cols=93 Identities=22% Similarity=0.232 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HH
Q 000322 1012 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LW 1087 (1670)
Q Consensus 1012 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----Lw 1087 (1670)
+.++-+|.-++..+. -..|..++.++|..+|.+++++...+.++.++++.+.|....++||++.|+++. |+
T Consensus 201 ev~~~LA~v~l~~~~-----E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La 275 (395)
T PF09295_consen 201 EVAVLLARVYLLMNE-----EVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLA 275 (395)
T ss_pred cHHHHHHHHHHhcCc-----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 456667776665443 278999999999999999999999999999999999999999999999999997 88
Q ss_pred HHHHhcCCCcccchhhHHHHHHHHHHhhhc
Q 000322 1088 LMYINSRTPLNHRLDAYDAALSVLCRCASA 1117 (1670)
Q Consensus 1088 lmYInsr~slddrl~~YdkAI~aLe~las~ 1117 (1670)
..|+..+ .|+.|+.+|..+.-.
T Consensus 276 ~~Yi~~~--------d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 276 ECYIQLG--------DFENALLALNSCPML 297 (395)
T ss_pred HHHHhcC--------CHHHHHHHHhcCcCC
Confidence 8999999 999999999776543
No 128
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.74 E-value=0.021 Score=58.90 Aligned_cols=107 Identities=12% Similarity=0.079 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-------HHHHHHhcCCCccc
Q 000322 1030 EGMKKALSLLSRALEADPTS---EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-------LWLMYINSRTPLNH 1099 (1670)
Q Consensus 1030 g~ydAALdLLsrALEINPtS---aeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-------LwlmYInsr~sldd 1099 (1670)
++.+.+-..+...++-+|++ .-+++.++..++..+.-+++...|+.+++..|+... |+.+|+..+
T Consensus 25 ~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~----- 99 (145)
T PF09976_consen 25 GDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQG----- 99 (145)
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 44577777899999999999 778888999999999999999999999999877643 788899999
Q ss_pred chhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHH
Q 000322 1100 RLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRI 1153 (1670)
Q Consensus 1100 rl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti 1153 (1670)
.|++|+..|... ... + +--.++..+-++|...|++++|+..+
T Consensus 100 ---~~d~Al~~L~~~-~~~-~-------~~~~~~~~~Gdi~~~~g~~~~A~~~y 141 (145)
T PF09976_consen 100 ---QYDEALATLQQI-PDE-A-------FKALAAELLGDIYLAQGDYDEARAAY 141 (145)
T ss_pred ---CHHHHHHHHHhc-cCc-c-------hHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999552 111 1 12446778999999999999999855
No 129
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.69 E-value=3.2 Score=52.87 Aligned_cols=122 Identities=16% Similarity=0.116 Sum_probs=101.2
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHH
Q 000322 1029 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAAL 1108 (1670)
Q Consensus 1029 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI 1108 (1670)
.+..+++..+|...|.-.|.---.|-.|+.+.++.++-.....-|+++|+--|-+-.||.-|++.---.-+.- +.-.
T Consensus 58 ~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~---~~lr 134 (577)
T KOG1258|consen 58 IEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDP---ETLR 134 (577)
T ss_pred hhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCH---HHHH
Confidence 3445999999999999999999999999999999999999999999999999999999999998663333332 4456
Q ss_pred HHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000322 1109 SVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1109 ~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1158 (1670)
..||++.... . .+|..--+|-..+.....++++......+.||..
T Consensus 135 ~~fe~A~~~v--G---~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 135 DLFERAKSYV--G---LDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHHHHHHhc--c---cchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 6666665554 2 2455667888889999999999999999999995
No 130
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.68 E-value=0.28 Score=56.31 Aligned_cols=242 Identities=15% Similarity=0.104 Sum_probs=144.5
Q ss_pred cHHHHHHHHHHHhccc--c-----cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCC
Q 000322 1010 SNEQCVEMALLILNQD--A-----NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG 1082 (1670)
Q Consensus 1010 d~qlWLelAl~~Lnq~--~-----n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~ 1082 (1670)
+.+..|+.|.+.+... . ....+|+.|.++|.+| +..|...+.-.++-++|++|.+..
T Consensus 2 ~a~~l~~~Aek~lk~~~~~~~~f~~~~~~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~-- 65 (282)
T PF14938_consen 2 EAEELIKEAEKKLKKSSGFFSFFGSKKPDYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCY-- 65 (282)
T ss_dssp HHHHHHHHHHHHCS---TCCCHH--SCHHHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHhccccchhhhcCCCCCCHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHH--
Confidence 3466788899998854 1 1346888888888776 777777788888888998886543
Q ss_pred CHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccC
Q 000322 1083 SYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATG 1162 (1670)
Q Consensus 1083 NY~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~ 1162 (1670)
.+.+..+ +.-..|..|..+|.+. . ++ ...+.+...+++|...|+...|-..+.+|-.
T Consensus 66 --------~~~~~~~-~Aa~~~~~Aa~~~k~~---~-~~------~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~---- 122 (282)
T PF14938_consen 66 --------EKLGDKF-EAAKAYEEAANCYKKG---D-PD------EAIECYEKAIEIYREAGRFSQAAKCLKELAE---- 122 (282)
T ss_dssp --------HHTT-HH-HHHHHHHHHHHHHHHT---T-HH------HHHHHHHHHHHHHHHCT-HHHHHHHHHHHHH----
T ss_pred --------HHcCCHH-HHHHHHHHHHHHHHhh---C-HH------HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH----
Confidence 3333100 0111334444444222 1 11 2356777778888888888877663333221
Q ss_pred CCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHH
Q 000322 1163 SNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSV 1242 (1670)
Q Consensus 1163 g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY 1242 (1670)
+ |...+ .+++.|+.++..|+++|
T Consensus 123 -------------~-------------------ye~~~-------------------------~d~e~Ai~~Y~~A~~~y 145 (282)
T PF14938_consen 123 -------------I-------------------YEEQL-------------------------GDYEKAIEYYQKAAELY 145 (282)
T ss_dssp -------------H-------------------HCCTT---------------------------HHHHHHHHHHHHHHH
T ss_pred -------------H-------------------HHHHc-------------------------CCHHHHHHHHHHHHHHH
Confidence 0 11110 24588888999999999
Q ss_pred hhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH-------HHHHH--HHhhcccCCcc
Q 000322 1243 ELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-------VLMKA--RLQKHDFGDLS 1313 (1670)
Q Consensus 1243 ~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL-------~L~AA--yL~~K~m~~~A 1313 (1670)
+. .+. ........++...+++.+++.++|+++|+++.+.+-....+ .|.+. +|...+ +..|
T Consensus 146 ~~-e~~--------~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D-~v~A 215 (282)
T PF14938_consen 146 EQ-EGS--------PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGD-YVAA 215 (282)
T ss_dssp HH-TT---------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT--HHHH
T ss_pred HH-CCC--------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCC-HHHH
Confidence 86 221 22334455565666677889999999999999987654322 23333 333333 6678
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000322 1314 SVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1357 (1670)
Q Consensus 1314 ~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ 1357 (1670)
...|+.....+|.=...-.|....=|--+++.+|.+..-..+..
T Consensus 216 ~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~ 259 (282)
T PF14938_consen 216 RKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAE 259 (282)
T ss_dssp HHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHH
T ss_pred HHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 89999999999866554455555555566777776665555544
No 131
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.66 E-value=1.1 Score=58.61 Aligned_cols=317 Identities=11% Similarity=-0.011 Sum_probs=169.7
Q ss_pred hhHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH---------HHHHHH
Q 000322 1030 EGMKKALSLLSRALEADPT---------SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---------LWLMYI 1091 (1670)
Q Consensus 1030 g~ydAALdLLsrALEINPt---------SaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~---------LwlmYI 1091 (1670)
++++.|..++.++++.-+. ..++...++.++...+...++..+++.|++..|.... ++.+|.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 4568888888888765332 1233344556677788888899999999986554432 344455
Q ss_pred hcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchH
Q 000322 1092 NSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFL 1171 (1670)
Q Consensus 1092 nsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSL 1171 (1670)
..+ .|++|+..|++..... ... .......-.+..+..++...|+++.|+..+.+....+...
T Consensus 503 ~~G--------~~~~A~~~~~~al~~~-~~~-g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~-------- 564 (903)
T PRK04841 503 CKG--------ELARALAMMQQTEQMA-RQH-DVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQ-------- 564 (903)
T ss_pred HcC--------CHHHHHHHHHHHHHHH-hhh-cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--------
Confidence 555 6788888887765543 111 1112223456677888899999999999665554311110
Q ss_pred HHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcch
Q 000322 1172 SDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESL 1251 (1670)
Q Consensus 1172 sKi~~YLt~sDR~~AWL~~iYllrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ndesl 1251 (1670)
+..........+ .+.+.++...|...+|. .++..|...+.. .+.
T Consensus 565 ---------~~~~~~~~~~~~-----~~la~~~~~~G~~~~A~------------------~~~~~al~~~~~-~~~--- 608 (903)
T PRK04841 565 ---------HLEQLPMHEFLL-----RIRAQLLWEWARLDEAE------------------QCARKGLEVLSN-YQP--- 608 (903)
T ss_pred ---------ccccccHHHHHH-----HHHHHHHHHhcCHHHHH------------------HHHHHhHHhhhc-cCc---
Confidence 110001111111 11244444444444443 333333222221 110
Q ss_pred hhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---hhH-----HHHHHHHhhcccCCccHHHHHHHHHh
Q 000322 1252 EKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSC---LEL-----VLMKARLQKHDFGDLSSVGFEEALIK 1323 (1670)
Q Consensus 1252 a~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d---~eL-----~L~AAyL~~K~m~~~A~svle~AL~~ 1323 (1670)
......-....+.+...++.+.|...+..++...+.. ... .+...++...+..+.+...+......
T Consensus 609 ------~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~ 682 (903)
T PRK04841 609 ------QQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP 682 (903)
T ss_pred ------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC
Confidence 0001111122233334778999999998887754322 111 11222323333244555555554432
Q ss_pred CCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccch
Q 000322 1324 WPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQM 1403 (1670)
Q Consensus 1324 ~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~ 1403 (1670)
.+.........+..+....+..+++++|..++.+... ..+..... .
T Consensus 683 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~--------------~~~~~g~~--------------------~ 728 (903)
T PRK04841 683 EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE--------------NARSLRLM--------------------S 728 (903)
T ss_pred CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------HHHHhCch--------------------H
Confidence 2222211222345667778888899999888766322 21111100 0
Q ss_pred hhHH--HHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHH
Q 000322 1404 DVMF--GYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFK 1442 (1670)
Q Consensus 1404 d~~f--a~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i 1442 (1670)
+.+. ..++.+|+. .|+.++|..++.+||.......+.
T Consensus 729 ~~a~~~~~la~a~~~--~G~~~~A~~~L~~Al~la~~~g~~ 767 (903)
T PRK04841 729 DLNRNLILLNQLYWQ--QGRKSEAQRVLLEALKLANRTGFI 767 (903)
T ss_pred HHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHhCccchh
Confidence 1111 455666766 999999999999999988876544
No 132
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.53 E-value=0.021 Score=61.70 Aligned_cols=104 Identities=15% Similarity=0.160 Sum_probs=76.6
Q ss_pred HHHHHHhC-CCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHH
Q 000322 1039 LSRALEAD-PTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCR 1113 (1670)
Q Consensus 1039 LsrALEIN-PtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~ 1113 (1670)
|.-...+. ++.=+..|.|+..+++.++-.++..+|+..+.++|.+.. |+.+|...+ .|.+||.+|..
T Consensus 23 l~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g--------~~~~AI~aY~~ 94 (157)
T PRK15363 23 LRMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQK--------HWGEAIYAYGR 94 (157)
T ss_pred HHHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh--------hHHHHHHHHHH
Confidence 44455667 777777888888888888777788888888888887766 777777777 78888888877
Q ss_pred hhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000322 1114 CASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1114 las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1158 (1670)
+..-. ++- -...+.+..+|.+-|+.+.|++.+..-..
T Consensus 95 A~~L~-~dd-------p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 95 AAQIK-IDA-------PQAPWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHhcC-CCC-------chHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77766 343 56777888888888888888775554443
No 133
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.53 E-value=0.0055 Score=74.81 Aligned_cols=75 Identities=15% Similarity=0.217 Sum_probs=66.5
Q ss_pred hhccccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHhCCCCchHHHHHHHHHhhCC
Q 000322 1005 KQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEIL---WITYLLIFYSNTNSVGKDDMFSYSVKHNE 1081 (1670)
Q Consensus 1005 e~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaea---Wy~yl~lY~~~~~~eea~emlekAVelnP 1081 (1670)
+..|.+.+.|+.++.-+... |+|+.|+..|++||+++|+++++ ||.++..|..++..+++.++|++|+++.+
T Consensus 69 ~~dP~~a~a~~NLG~AL~~l-----GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn 143 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSK-----GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYN 143 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 46688889999999988776 56899999999999999999965 99999999999999999999999999853
Q ss_pred CCH
Q 000322 1082 GSY 1084 (1670)
Q Consensus 1082 ~NY 1084 (1670)
..|
T Consensus 144 ~~f 146 (453)
T PLN03098 144 LKF 146 (453)
T ss_pred hhH
Confidence 333
No 134
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.53 E-value=0.041 Score=62.42 Aligned_cols=144 Identities=12% Similarity=0.127 Sum_probs=101.8
Q ss_pred ccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH
Q 000322 1009 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILW---ITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1085 (1670)
Q Consensus 1009 ~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaW---y~yl~lY~~~~~~eea~emlekAVelnP~NY~ 1085 (1670)
.+.+.+...|...+.. |+|+.|+..|..+++.+|.++.+- +.++..|++.++-.++...|++.++..|++-.
T Consensus 30 ~~~~~~Y~~A~~~~~~-----g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~ 104 (243)
T PRK10866 30 NPPSEIYATAQQKLQD-----GNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 104 (243)
T ss_pred CCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence 3556677888888775 568999999999999999988776 88899999999999999999999999999876
Q ss_pred HH-HHHHh------cC-------CC--cccch-hhHHHHHHHHHHhhhcCCCCcchh---hhhhH-------HHHHHHHH
Q 000322 1086 LW-LMYIN------SR-------TP--LNHRL-DAYDAALSVLCRCASASDGDEMHA---SACIL-------DLFLQMLQ 1138 (1670)
Q Consensus 1086 Lw-lmYIn------sr-------~s--lddrl-~~YdkAI~aLe~las~~~~Dr~~~---Sa~iL-------DILL~Lvq 1138 (1670)
.- -+|.. .. .. ..+++ ..-.+|+..|.+....+ |+-... -..+. +-=+....
T Consensus 105 ~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-P~S~ya~~A~~rl~~l~~~la~~e~~ia~ 183 (243)
T PRK10866 105 IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-PNSQYTTDATKRLVFLKDRLAKYELSVAE 183 (243)
T ss_pred hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 12221 11 00 11222 12367999999999999 552111 11112 22245566
Q ss_pred HHHHhcCHHHHHHHHHhhcc
Q 000322 1139 CFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1139 LY~qSGnydKAI~ti~rLEq 1158 (1670)
+|...|.|.-||.++..+..
T Consensus 184 ~Y~~~~~y~AA~~r~~~v~~ 203 (243)
T PRK10866 184 YYTKRGAYVAVVNRVEQMLR 203 (243)
T ss_pred HHHHcCchHHHHHHHHHHHH
Confidence 78888888888887777764
No 135
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.52 E-value=0.019 Score=66.05 Aligned_cols=97 Identities=15% Similarity=0.037 Sum_probs=82.6
Q ss_pred CHHHHHHHHHH-HHhCCCCchHHHHHHHHHhhCCCC-------HHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCC
Q 000322 1049 SEILWITYLLI-FYSNTNSVGKDDMFSYSVKHNEGS-------YALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDG 1120 (1670)
Q Consensus 1049 SaeaWy~yl~l-Y~~~~~~eea~emlekAVelnP~N-------Y~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~ 1120 (1670)
++..||..+.- +...+...++...|++.++..|++ |||+..|.+.+ .|++|+..|...++.+ |
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g--------~~~~A~~~f~~vv~~y-P 211 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKG--------KKDDAAYYFASVVKNY-P 211 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHC-C
Confidence 45788888664 455677778999999999999987 66889999999 9999999999999988 4
Q ss_pred CcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000322 1121 DEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1121 Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1158 (1670)
+ |....|.++.+..+|...|++++|+.++..+..
T Consensus 212 ~----s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 212 K----SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred C----CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 345699999999999999999999998888775
No 136
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.52 E-value=0.0076 Score=68.87 Aligned_cols=143 Identities=15% Similarity=0.203 Sum_probs=87.7
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhC--CCCHH--------HHHHHHhc-CCCc
Q 000322 1029 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHN--EGSYA--------LWLMYINS-RTPL 1097 (1670)
Q Consensus 1029 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVeln--P~NY~--------LwlmYIns-r~sl 1097 (1670)
.+.|..|-.++.+ +.....++.+|..-+.+|... ...++.++|++|+++. -++.. ++.+|.+. +
T Consensus 55 ~~ay~kAa~~~~~-~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~--- 129 (282)
T PF14938_consen 55 AEAYEKAADCYEK-LGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLG--- 129 (282)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT----
T ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcC---
Confidence 3344444444433 222233555666666776555 6778889999998752 23333 66777776 5
Q ss_pred ccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCc----ccchHHH
Q 000322 1098 NHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDR----HSLFLSD 1173 (1670)
Q Consensus 1098 ddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE----~~lSLsK 1173 (1670)
.|++|++.|.+++.-+..+ .......++++.+..|+...|+|++||..+.++....++...- +...+..
T Consensus 130 -----d~e~Ai~~Y~~A~~~y~~e--~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 130 -----DYEKAIEYYQKAAELYEQE--GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp ------HHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHHHHHHC--CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 7889999998877765222 2566778999999999999999999999888876533322111 1234455
Q ss_pred HHHhhccCCc
Q 000322 1174 ILTCLTISDK 1183 (1670)
Q Consensus 1174 i~~YLt~sDR 1183 (1670)
+..||.++|-
T Consensus 203 ~l~~L~~~D~ 212 (282)
T PF14938_consen 203 ILCHLAMGDY 212 (282)
T ss_dssp HHHHHHTT-H
T ss_pred HHHHHHcCCH
Confidence 5556666553
No 137
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.45 E-value=0.04 Score=68.91 Aligned_cols=123 Identities=15% Similarity=0.103 Sum_probs=90.7
Q ss_pred HHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC--C------chHHHHHHHHHhh--CCCC---
Q 000322 1017 MALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN--S------VGKDDMFSYSVKH--NEGS--- 1083 (1670)
Q Consensus 1017 lAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~--~------eea~emlekAVel--nP~N--- 1083 (1670)
.|..++++. ..+.+..|..+|.+|++++|+.+.+|-.++..|..+.. + ..+.+..++|+.+ +|..
T Consensus 345 rg~~~~~~~--~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~ 422 (517)
T PRK10153 345 QAHHYLNSG--DAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRI 422 (517)
T ss_pred HHHHHHhcC--CHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHH
Confidence 345555543 35678999999999999999999999998776643311 1 1244555666554 4333
Q ss_pred HH-HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000322 1084 YA-LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1084 Y~-LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1158 (1670)
|. ++.+++..+ .+++|...|+++...+ ++ -+.+..+-++|...|+++.|+..+.+-+.
T Consensus 423 ~~ala~~~~~~g--------~~~~A~~~l~rAl~L~-ps--------~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 423 YEILAVQALVKG--------KTDEAYQAINKAIDLE-MS--------WLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHhcC--------CHHHHHHHHHHHHHcC-CC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33 777777777 8899999999998887 44 46899999999999999999997666553
No 138
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.41 E-value=0.31 Score=61.03 Aligned_cols=92 Identities=17% Similarity=0.177 Sum_probs=76.2
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhhcccCCccHHHHHHHHHh--CCCCCchHHHHHHHHHHHHHHcCC
Q 000322 1271 MAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIK--WPKGVPGIQCIWNQYVEYALQNGR 1347 (1670)
Q Consensus 1271 lI~LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~~--~PkNa~g~~caW~QLIq~al~~en 1347 (1670)
|....|.+-|...|...|+.+|++... .-+..||.--+-..-++.+|++++.. .|+... .+|.-.|.++-.=||
T Consensus 411 y~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~---~Iw~r~l~yES~vGd 487 (656)
T KOG1914|consen 411 YYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSK---EIWDRMLEYESNVGD 487 (656)
T ss_pred HHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhH---HHHHHHHHHHHhccc
Confidence 333448888889999999999999999 77778876655466888999999998 555443 699999999999999
Q ss_pred hHHHHHHHHHHHHhhhhc
Q 000322 1348 HDFAAELMDRWFHSVWKV 1365 (1670)
Q Consensus 1348 ~d~Ai~Lc~~ff~gia~~ 1365 (1670)
+..++.|-++.|..+...
T Consensus 488 L~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 488 LNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHHHHHHHHHHhcchh
Confidence 999999999988877644
No 139
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.31 E-value=0.033 Score=58.90 Aligned_cols=94 Identities=10% Similarity=0.132 Sum_probs=71.5
Q ss_pred HHHHHHHHHhCC--CCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCH-----H--HHHHHHhcCCCcccchhhHHH
Q 000322 1036 LSLLSRALEADP--TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY-----A--LWLMYINSRTPLNHRLDAYDA 1106 (1670)
Q Consensus 1036 LdLLsrALEINP--tSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY-----~--LwlmYInsr~slddrl~~Ydk 1106 (1670)
.+++...+.+++ ..+.+++.++.+|...+..+++.++|++|++..|+.. + ++.+|...+ .|++
T Consensus 19 ~~~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g--------~~~~ 90 (172)
T PRK02603 19 ADLILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNG--------EHDK 90 (172)
T ss_pred HHHHHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcC--------CHHH
Confidence 344445555444 4566778889999999999999999999999877532 1 677788777 8999
Q ss_pred HHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcC
Q 000322 1107 ALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGN 1145 (1670)
Q Consensus 1107 AI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGn 1145 (1670)
|+.+|.+..... ++. .+.+..+..+|...|+
T Consensus 91 A~~~~~~al~~~-p~~-------~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 91 ALEYYHQALELN-PKQ-------PSALNNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHHHhC-ccc-------HHHHHHHHHHHHHcCC
Confidence 999999988877 454 5667777778877766
No 140
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=0.041 Score=65.53 Aligned_cols=124 Identities=14% Similarity=0.129 Sum_probs=84.8
Q ss_pred hhhhccc-cHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCC
Q 000322 1003 KLKQVEL-SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNE 1081 (1670)
Q Consensus 1003 ~le~~~~-d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP 1081 (1670)
+++.-.. +.++||..+.-+| |+|+.|++.|.-+.+-+--.+++|..++..+...|.-.++...-++| |
T Consensus 50 ~~~~EEE~~~~lWia~C~fhL-------gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka----~ 118 (557)
T KOG3785|consen 50 NLDREEEDSLQLWIAHCYFHL-------GDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA----P 118 (557)
T ss_pred ccchhhhHHHHHHHHHHHHhh-------ccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC----C
Confidence 4444433 5599999988776 77999999999999988889999999988877777666665554444 5
Q ss_pred CCHH----HHHHHHhcCCCcccchhhHHHHHHHH-HHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhh
Q 000322 1082 GSYA----LWLMYINSRTPLNHRLDAYDAALSVL-CRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRL 1156 (1670)
Q Consensus 1082 ~NY~----LwlmYInsr~slddrl~~YdkAI~aL-e~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rL 1156 (1670)
.+-. |..+-.+.. | ++-+..+ +++ .|- +|=-|.|+-..-|--.|+.||.++.|+
T Consensus 119 k~pL~~RLlfhlahkln----d-----Ek~~~~fh~~L-----qD~-------~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 119 KTPLCIRLLFHLAHKLN----D-----EKRILTFHSSL-----QDT-------LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred CChHHHHHHHHHHHHhC----c-----HHHHHHHHHHH-----hhh-------HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 5554 222222222 1 3333333 222 232 444567777777778899999999999
Q ss_pred cc
Q 000322 1157 LI 1158 (1670)
Q Consensus 1157 Eq 1158 (1670)
++
T Consensus 178 L~ 179 (557)
T KOG3785|consen 178 LQ 179 (557)
T ss_pred Hh
Confidence 97
No 141
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.26 E-value=0.039 Score=64.28 Aligned_cols=225 Identities=14% Similarity=0.057 Sum_probs=121.2
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCC
Q 000322 1103 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISD 1182 (1670)
Q Consensus 1103 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sD 1182 (1670)
+|..+|.-.. .....+... ++...++...|...|.++.+|. .|. ++.++.-..+.-+..|+...+
T Consensus 16 ~Y~~~i~e~~-~~~~~~~~~-------~e~~~~~~Rs~iAlg~~~~vl~---ei~----~~~~~~l~av~~la~y~~~~~ 80 (290)
T PF04733_consen 16 NYQQCINEAS-LKSFSPENK-------LERDFYQYRSYIALGQYDSVLS---EIK----KSSSPELQAVRLLAEYLSSPS 80 (290)
T ss_dssp -HHHHCHHHH-CHTSTCHHH-------HHHHHHHHHHHHHTT-HHHHHH---HS-----TTSSCCCHHHHHHHHHHCTST
T ss_pred hHHHHHHHhh-ccCCCchhH-------HHHHHHHHHHHHHcCChhHHHH---Hhc----cCCChhHHHHHHHHHHHhCcc
Confidence 6788886554 333332234 7788888899999999998776 222 222332334555667776633
Q ss_pred cc-hh------hHHHHH---HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchh
Q 000322 1183 KL-IF------WVCCVY---LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLE 1252 (1670)
Q Consensus 1183 R~-~A------WL~~iY---llrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ndesla 1252 (1670)
+. .+ |+...+ ...++++-+-+|...|...+|+.+ +.+.-.-|.-.. ++..|=. .|.-+++
T Consensus 81 ~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~---l~~~~~lE~~al------~Vqi~L~-~~R~dlA 150 (290)
T PF04733_consen 81 DKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKL---LHKGGSLELLAL------AVQILLK-MNRPDLA 150 (290)
T ss_dssp THHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCC---CTTTTCHHHHHH------HHHHHHH-TT-HHHH
T ss_pred chHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHH---HHccCcccHHHH------HHHHHHH-cCCHHHH
Confidence 22 11 333332 234567677777777888888887 555422222211 1222221 4444444
Q ss_pred hhh---h-----hchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHH
Q 000322 1253 KET---N-----LRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALI 1322 (1670)
Q Consensus 1253 ~~~---~-----~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~ 1322 (1670)
... - ..+...+...++..+..-+....|.-.|+.+.+.+|..+.+ .+..++|..++ .++|...+++|+.
T Consensus 151 ~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~-~~eAe~~L~~al~ 229 (290)
T PF04733_consen 151 EKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGH-YEEAEELLEEALE 229 (290)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT--HHHHHHHHHHHCC
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHH
Confidence 443 1 11112222222222222335778888888888887777777 56666666665 7788888888888
Q ss_pred hCCCCCchHHHHHHHHHHHHHHcCCh-HHHHHHHHH
Q 000322 1323 KWPKGVPGIQCIWNQYVEYALQNGRH-DFAAELMDR 1357 (1670)
Q Consensus 1323 ~~PkNa~g~~caW~QLIq~al~~en~-d~Ai~Lc~~ 1357 (1670)
.+|+++. ...-+|-.....|+. +.+.+...+
T Consensus 230 ~~~~~~d----~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 230 KDPNDPD----TLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp C-CCHHH----HHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hccCCHH----HHHHHHHHHHHhCCChhHHHHHHHH
Confidence 8888777 444445555555555 444444443
No 142
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.26 Score=60.15 Aligned_cols=292 Identities=13% Similarity=0.007 Sum_probs=181.5
Q ss_pred CHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHH-HHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhh
Q 000322 1049 SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALW-LMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASA 1127 (1670)
Q Consensus 1049 SaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~Lw-lmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa 1127 (1670)
.+.++-++..+..-.-+..+.-.|-..+|...|.-.|+| |.|.--.-... +- .|..+....-+.-..+ +++
T Consensus 160 cp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~-~h-s~a~~t~l~le~~~~l-r~N----- 231 (564)
T KOG1174|consen 160 CPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNF-KH-SDASQTFLMLHDNTTL-RCN----- 231 (564)
T ss_pred cchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhc-cc-chhhhHHHHHHhhccC-Ccc-----
Confidence 455555555555445556667788889999998888865 44433220000 00 3444555554555667 677
Q ss_pred hhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhh
Q 000322 1128 CILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLL 1207 (1670)
Q Consensus 1128 ~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGn~y~q~ 1207 (1670)
.+++..+.++|...|++++|+.+...-. ..+| ..+..|-+ |..|+ .+.
T Consensus 232 --vhLl~~lak~~~~~Gdn~~a~~~Fe~~~-----~~dp--y~i~~MD~-------------------Ya~LL----~~e 279 (564)
T KOG1174|consen 232 --EHLMMALGKCLYYNGDYFQAEDIFSSTL-----CANP--DNVEAMDL-------------------YAVLL----GQE 279 (564)
T ss_pred --HHHHHHHhhhhhhhcCchHHHHHHHHHh-----hCCh--hhhhhHHH-------------------HHHHH----Hhc
Confidence 9999999999999999999998443222 2333 11111111 22211 111
Q ss_pred hhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHH
Q 000322 1208 ECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKY 1287 (1670)
Q Consensus 1208 e~~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~Lfdkl 1287 (1670)
+. |.++ -.-.-.||+- +-| +....=+. ...+..-.+...|+.+-.+.
T Consensus 280 g~----------~e~~----~~L~~~Lf~~--~~~----------------ta~~wfV~-~~~l~~~K~~~rAL~~~eK~ 326 (564)
T KOG1174|consen 280 GG----------CEQD----SALMDYLFAK--VKY----------------TASHWFVH-AQLLYDEKKFERALNFVEKC 326 (564)
T ss_pred cC----------HhhH----HHHHHHHHhh--hhc----------------chhhhhhh-hhhhhhhhhHHHHHHHHHHH
Confidence 10 0000 0000112221 101 11111111 11212233888899999999
Q ss_pred HHhCCCchhH-HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcc
Q 000322 1288 IKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQ 1366 (1670)
Q Consensus 1288 Lk~~P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q 1366 (1670)
+...|..++- .|++..|..-+-++.|+-.|..|..+.|-.-. ++.=|+...+..+++.+|.-+.+.-|..+..+.
T Consensus 327 I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~----~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA 402 (564)
T KOG1174|consen 327 IDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLE----IYRGLFHSYLAQKRFKEANALANWTIRLFQNSA 402 (564)
T ss_pred hccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHH----HHHHHHHHHHhhchHHHHHHHHHHHHHHhhcch
Confidence 9999999998 88888764444499999999999999998888 777789999999999999999877665554432
Q ss_pred cccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHH
Q 000322 1367 YSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVR 1446 (1670)
Q Consensus 1367 ~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLN 1446 (1670)
+ +|..+ |--.|..--..-++|...|||+|+.+|+= +...+
T Consensus 403 ~----~LtL~----------------------------------g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y--~~AV~ 442 (564)
T KOG1174|consen 403 R----SLTLF----------------------------------GTLVLFPDPRMREKAKKFAEKSLKINPIY--TPAVN 442 (564)
T ss_pred h----hhhhh----------------------------------cceeeccCchhHHHHHHHHHhhhccCCcc--HHHHH
Confidence 2 22222 21111111334589999999999999987 99999
Q ss_pred HHHHHHhcCCC
Q 000322 1447 EHAMLLLINES 1457 (1670)
Q Consensus 1447 NYAYFLS~e~~ 1457 (1670)
--|-.++.+|+
T Consensus 443 ~~AEL~~~Eg~ 453 (564)
T KOG1174|consen 443 LIAELCQVEGP 453 (564)
T ss_pred HHHHHHHhhCc
Confidence 99999999886
No 143
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=96.17 E-value=0.059 Score=68.69 Aligned_cols=178 Identities=17% Similarity=0.218 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhh
Q 000322 1130 LDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLEC 1209 (1670)
Q Consensus 1130 LDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGn~y~q~e~ 1209 (1670)
++.|-..+.||+..|..+||-..+.+... .. .|. .|+| ++||+..+..+
T Consensus 424 lemw~~vi~CY~~lg~~~kaeei~~q~le-----k~---------------~d~--~lyc---------~LGDv~~d~s~ 472 (777)
T KOG1128|consen 424 LEMWDPVILCYLLLGQHGKAEEINRQELE-----KD---------------PDP--RLYC---------LLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHhc-----CC---------------Ccc--hhHH---------HhhhhccChHH
Confidence 45666778899999998888665554442 11 111 3443 36777777777
Q ss_pred hhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHH---------HHHHHhcCHHHH
Q 000322 1210 EKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHI---------WCMAVLNGLECS 1280 (1670)
Q Consensus 1210 ~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~I---------R~lI~LEDse~A 1280 (1670)
..+|+.+ .+.-++.|..+.|--.|+. .. +++..+.....+.+|.+ -+.+.+++.+.+
T Consensus 473 yEkawEl---------sn~~sarA~r~~~~~~~~~----~~-fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 473 YEKAWEL---------SNYISARAQRSLALLILSN----KD-FSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred HHHHHHH---------hhhhhHHHHHhhccccccc----hh-HHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 7777776 2233444554433222321 11 11112233334444432 222347799999
Q ss_pred HHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000322 1281 MNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1357 (1670)
Q Consensus 1281 ~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ 1357 (1670)
...|...+.+.|...+- -|.++||.+++ ..+|+..+.+|+.-+=++-. +|.-|.-.+..-+.++.|++.+.+
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~-k~ra~~~l~EAlKcn~~~w~----iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKK-KKRAFRKLKEALKCNYQHWQ----IWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhh-hHHHHHHHHHHhhcCCCCCe----eeechhhhhhhcccHHHHHHHHHH
Confidence 99999999999999999 89999999887 88999999999999988888 999999999999999999998866
No 144
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.13 Score=63.98 Aligned_cols=98 Identities=12% Similarity=0.074 Sum_probs=79.0
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchh
Q 000322 1027 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLD 1102 (1670)
Q Consensus 1027 n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~ 1102 (1670)
..+|+|+.|..+|..|+.++|++-.+|..-+..|-..++-++++.--.+.++++|+=-. ++--.+..+
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg-------- 84 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG-------- 84 (539)
T ss_pred cccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc--------
Confidence 45799999999999999999999999999999999999988888889999999984211 455555555
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHH
Q 000322 1103 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCF 1140 (1670)
Q Consensus 1103 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY 1140 (1670)
.|++|+..|.+..+.. +++ --+.--|++.+
T Consensus 85 ~~~eA~~ay~~GL~~d-~~n-------~~L~~gl~~a~ 114 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKD-PSN-------KQLKTGLAQAY 114 (539)
T ss_pred cHHHHHHHHHHHhhcC-Cch-------HHHHHhHHHhh
Confidence 8999999999888877 665 33444455555
No 145
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.17 E-value=0.04 Score=57.88 Aligned_cols=106 Identities=11% Similarity=0.037 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-------HHHHHHhcCCCcccchh
Q 000322 1032 MKKALSLLSRALEADPTS--EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-------LWLMYINSRTPLNHRLD 1102 (1670)
Q Consensus 1032 ydAALdLLsrALEINPtS--aeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-------LwlmYInsr~slddrl~ 1102 (1670)
|..+.+.|...+..++.. +.+|+.++.++..++..+++...|++|+++.|+... ++.+|...+
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g-------- 86 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG-------- 86 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC--------
Confidence 455566666666666666 778899999999999999999999999999776432 778888888
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHH-------HhcCHHHHHHHH
Q 000322 1103 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFC-------MSGNTEKAIQRI 1153 (1670)
Q Consensus 1103 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~-------qSGnydKAI~ti 1153 (1670)
.+++|+..|++..+.. ++. .+.+..+..+|. ..|+++.|+..+
T Consensus 87 ~~~eA~~~~~~Al~~~-~~~-------~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 87 EHTKALEYYFQALERN-PFL-------PQALNNMAVICHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred CHHHHHHHHHHHHHhC-cCc-------HHHHHHHHHHHHHhhHHHHHcccHHHHHHHH
Confidence 8999999999988876 565 455666666666 778877665533
No 146
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.15 E-value=0.015 Score=52.05 Aligned_cols=64 Identities=13% Similarity=0.257 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcC
Q 000322 1048 TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASAS 1118 (1670)
Q Consensus 1048 tSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~ 1118 (1670)
.++.+|+.++.+|...++-.++..+|++|++++|++.. ++..|...+ ..|++|+..+.+..+.+
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~-------~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG-------KDYEEAIEDFEKALKLD 68 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT-------THHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-------ccHHHHHHHHHHHHHcC
Confidence 46899999999999999999999999999999998877 566777775 15889999988776654
No 147
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.12 E-value=0.019 Score=61.99 Aligned_cols=92 Identities=10% Similarity=-0.018 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HH
Q 000322 1012 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LW 1087 (1670)
Q Consensus 1012 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----Lw 1087 (1670)
+.--.+|.....+ |+++.|..+|.-...+||.++.-||-|+..+-.+++-.++.+.|.+|+.++|+++. ++
T Consensus 36 ~~lY~~A~~ly~~-----G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag 110 (157)
T PRK15363 36 NTLYRYAMQLMEV-----KEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 5555666666665 56799999999999999999999999999999999999999999999999999988 88
Q ss_pred HHHHhcCCCcccchhhHHHHHHHHHHhhh
Q 000322 1088 LMYINSRTPLNHRLDAYDAALSVLCRCAS 1116 (1670)
Q Consensus 1088 lmYInsr~slddrl~~YdkAI~aLe~las 1116 (1670)
..|+..+ ..+.|+..|.....
T Consensus 111 ~c~L~lG--------~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 111 ECYLACD--------NVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHcC--------CHHHHHHHHHHHHH
Confidence 8999988 66888888865444
No 148
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.11 E-value=0.015 Score=54.47 Aligned_cols=75 Identities=17% Similarity=0.314 Sum_probs=58.9
Q ss_pred CCCchHHHHHHHHHhhCCCC----HH--HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHH
Q 000322 1064 TNSVGKDDMFSYSVKHNEGS----YA--LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQML 1137 (1670)
Q Consensus 1064 ~~~eea~emlekAVelnP~N----Y~--LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~Lv 1137 (1670)
+.-+.+..+|+++++..|.+ ++ ++..|.+.+ .|++|+.+|.+ .... +.. .++.+.+.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~--------~y~~A~~~~~~-~~~~-~~~-------~~~~~l~a 65 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQG--------KYEEAIELLQK-LKLD-PSN-------PDIHYLLA 65 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTT--------HHHHHHHHHHC-HTHH-HCH-------HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCC--------CHHHHHHHHHH-hCCC-CCC-------HHHHHHHH
Confidence 34456889999999999964 34 588999999 99999999977 3333 333 67777889
Q ss_pred HHHHHhcCHHHHHHHHHh
Q 000322 1138 QCFCMSGNTEKAIQRISR 1155 (1670)
Q Consensus 1138 qLY~qSGnydKAI~ti~r 1155 (1670)
+++...|+|++||..|.+
T Consensus 66 ~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHTT-HHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhc
Confidence 999999999999997754
No 149
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.10 E-value=6.6 Score=49.96 Aligned_cols=388 Identities=11% Similarity=0.072 Sum_probs=207.6
Q ss_pred hhhhccccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCC
Q 000322 1003 KLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG 1082 (1670)
Q Consensus 1003 ~le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~ 1082 (1670)
.||..|.|...|-.|..-+=.+. ++++...|..-+...|.++.+|..|+.-.+..+.-+.+...|.+-+.-. -
T Consensus 12 rie~nP~di~sw~~lire~qt~~------~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv-L 84 (656)
T KOG1914|consen 12 RIEENPYDIDSWSQLIREAQTQP------IDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV-L 84 (656)
T ss_pred HHhcCCccHHHHHHHHHHHccCC------HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-h
Confidence 67888999999999888777773 4999999999999999999999999999888887777777777776544 4
Q ss_pred CHHHHHHHHhcCCCcccchhhH-HHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHH------HHHHhcCHHHHHHHHHh
Q 000322 1083 SYALWLMYINSRTPLNHRLDAY-DAALSVLCRCASASDGDEMHASACILDLFLQMLQ------CFCMSGNTEKAIQRISR 1155 (1670)
Q Consensus 1083 NY~LwlmYInsr~slddrl~~Y-dkAI~aLe~las~~~~Dr~~~Sa~iLDILL~Lvq------LY~qSGnydKAI~ti~r 1155 (1670)
|..||-+||.=-....+++.-| +...++|.=......-|. .|..|-+-+...+. =|..+.++++....+.|
T Consensus 85 nlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di--~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqr 162 (656)
T KOG1914|consen 85 NLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDI--KSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQR 162 (656)
T ss_pred hHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCc--ccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHH
Confidence 6779988886322222222121 233334422222221233 34444443333332 23344456655555555
Q ss_pred hcccccCCCCcccchHHHHH-Hhhcc--------CCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhcc----------
Q 000322 1156 LLIPATGSNDRHSLFLSDIL-TCLTI--------SDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAI---------- 1216 (1670)
Q Consensus 1156 LEq~Al~g~sE~~lSLsKi~-~YLt~--------sDR~~AWL~~iYllrYrvLPGn~y~q~e~~KEAf~I---------- 1216 (1670)
-.. .| -..|+++. .|.+- ..|-++-..-+|--..++.-.=-.+..|-...++.+
T Consensus 163 al~------tP-m~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~ 235 (656)
T KOG1914|consen 163 ALV------TP-MHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQ 235 (656)
T ss_pred Hhc------Cc-cccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHH
Confidence 554 44 44555655 33221 111111223333111111111112223323333333
Q ss_pred ---------CCCCcccch-hhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHH--H----------HHHH-HH
Q 000322 1217 ---------DWPPVQLED-DEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVN--H----------IWCM-AV 1273 (1670)
Q Consensus 1217 ---------~W~y~~vlk-dEPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN--~----------IR~l-I~ 1273 (1670)
.|.-..-++ .+-++...-+.-|+ +++..++... + +..+ ..
T Consensus 236 qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yay-----------------eQ~ll~l~~~peiWy~~s~yl~~~s~l~~~ 298 (656)
T KOG1914|consen 236 QVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAY-----------------EQCLLYLGYHPEIWYDYSMYLIEISDLLTE 298 (656)
T ss_pred HHHHHHHHHHHHhcCCcccccccHHHHHHHHHH-----------------HHHHHHHhcCHHHHHHHHHHHHHhhHHHHH
Confidence 333222222 11111111112111 1222222220 0 1111 11
Q ss_pred hcC-------HHHHHHHHHHHHHhCCCchhH--HHHHHHHh--hcccCCccH-HHHHHHHHhCCCCCchHHHHHHHHHHH
Q 000322 1274 LNG-------LECSMNLLEKYIKLYPSCLEL--VLMKARLQ--KHDFGDLSS-VGFEEALIKWPKGVPGIQCIWNQYVEY 1341 (1670)
Q Consensus 1274 LED-------se~A~~LfdklLk~~P~d~eL--~L~AAyL~--~K~m~~~A~-svle~AL~~~PkNa~g~~caW~QLIq~ 1341 (1670)
.+| .+++.+++++.+..--..-.+ ..++.|=+ .++...+.. ..+++++.+.-.+.. =.|.||+..
T Consensus 299 ~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t---Lv~~~~mn~ 375 (656)
T KOG1914|consen 299 KGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT---LVYCQYMNF 375 (656)
T ss_pred hcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc---eehhHHHHH
Confidence 122 556666666666543332222 33333311 111123444 777888877766665 367889999
Q ss_pred HHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHH-HHHHhhhc
Q 000322 1342 ALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNL-SLHRLLQN 1420 (1670)
Q Consensus 1342 al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD-~L~q~Lqg 1420 (1670)
+.+.++...|..|..+ |-+.-+ +. -++| ..-.. =||- .+
T Consensus 376 irR~eGlkaaR~iF~k--------------aR~~~r-~~------------hhVf-----------Va~A~mEy~c--sk 415 (656)
T KOG1914|consen 376 IRRAEGLKAARKIFKK--------------AREDKR-TR------------HHVF-----------VAAALMEYYC--SK 415 (656)
T ss_pred HHHhhhHHHHHHHHHH--------------HhhccC-Cc------------chhh-----------HHHHHHHHHh--cC
Confidence 9999999999988865 111001 00 1223 22222 2334 68
Q ss_pred CHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHH
Q 000322 1421 DWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLL 1472 (1670)
Q Consensus 1421 ~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~~~KtV 1472 (1670)
+.+=||..|+--|+.=++. -...+.|+-||+- |.+++.....|+++
T Consensus 416 D~~~AfrIFeLGLkkf~d~--p~yv~~YldfL~~----lNdd~N~R~LFEr~ 461 (656)
T KOG1914|consen 416 DKETAFRIFELGLKKFGDS--PEYVLKYLDFLSH----LNDDNNARALFERV 461 (656)
T ss_pred ChhHHHHHHHHHHHhcCCC--hHHHHHHHHHHHH----hCcchhHHHHHHHH
Confidence 8899999999999988877 6677888888886 55666666655443
No 150
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.10 E-value=0.6 Score=60.51 Aligned_cols=361 Identities=11% Similarity=0.100 Sum_probs=210.0
Q ss_pred hcccc-cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC------------CCchHHHHHHHHHhhCCCCHH--H
Q 000322 1022 LNQDA-NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNT------------NSVGKDDMFSYSVKHNEGSYA--L 1086 (1670)
Q Consensus 1022 Lnq~~-n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~------------~~eea~emlekAVelnP~NY~--L 1086 (1670)
|++.. -..|++|+||.-.+-. .+..+|-.++.+-.+.. +..-....+++|.+.. ++.. +
T Consensus 733 l~FSfyvtiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~-~e~eakv 806 (1416)
T KOG3617|consen 733 LDFSFYVTIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG-EEDEAKV 806 (1416)
T ss_pred hceeEEEEeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC-cchhhHH
Confidence 44443 3578999998655443 57788998887754221 1122346678885544 4444 8
Q ss_pred HHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCc
Q 000322 1087 WLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDR 1166 (1670)
Q Consensus 1087 wlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE 1166 (1670)
+-+-|..+ +.++|+.+|-+. ++ -|+ |=+||..+|.++.|.+ |-. +-+...-
T Consensus 807 AvLAieLg--------MlEeA~~lYr~c-kR------------~DL---lNKlyQs~g~w~eA~e----iAE-~~DRiHL 857 (1416)
T KOG3617|consen 807 AVLAIELG--------MLEEALILYRQC-KR------------YDL---LNKLYQSQGMWSEAFE----IAE-TKDRIHL 857 (1416)
T ss_pred HHHHHHHh--------hHHHHHHHHHHH-HH------------HHH---HHHHHHhcccHHHHHH----HHh-hccceeh
Confidence 88888888 889999988332 22 233 4578889999999988 332 1111100
Q ss_pred ccchHHHHHHhhccCCcchhhHHHH-----H-HHHhhcc---chH--HHhhhhhhhhhhccCCC-CcccchhhHHHHHHH
Q 000322 1167 HSLFLSDILTCLTISDKLIFWVCCV-----Y-LVIYRKL---PDA--VLQLLECEKELFAIDWP-PVQLEDDEKQRAIKL 1234 (1670)
Q Consensus 1167 ~~lSLsKi~~YLt~sDR~~AWL~~i-----Y-llrYrvL---PGn--~y~q~e~~KEAf~I~W~-y~~vlkdEPdnalAL 1234 (1670)
--+--...-||...-+|.+-|.|- | .-.+|-| |+. .|-+..+++.+|.. |- |-. ...|-|-|+..
T Consensus 858 -r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~W-WgqYlE-S~GemdaAl~~ 934 (1416)
T KOG3617|consen 858 -RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSW-WGQYLE-SVGEMDAALSF 934 (1416)
T ss_pred -hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHH-HHHHHh-cccchHHHHHH
Confidence 001223445566555555544432 2 2222222 222 25555555555655 43 322 33567888888
Q ss_pred HHHHHHHHhh-----hcCCcchhhhh---hhchhhHhHHHHHHHHHHhcCHHHHHHHHHHH------HHhCCCc------
Q 000322 1235 IEMAVNSVEL-----YSNGESLEKET---NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKY------IKLYPSC------ 1294 (1670)
Q Consensus 1235 ~smA~dYY~~-----~~ndesla~~~---~~kt~~~fKLN~IR~lI~LEDse~A~~Lfdkl------Lk~~P~d------ 1294 (1670)
.+.|-|||.. +.|+-+.+..+ +.+.+.|.-+ -|.|...|+..+|+..|.++ +.+|-++
T Consensus 935 Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhl--aR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L 1012 (1416)
T KOG3617|consen 935 YSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHL--ARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRL 1012 (1416)
T ss_pred HHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9998899875 22333333333 3333344433 24444455777776655443 3333221
Q ss_pred ---------hhHHHHHHHHhhccc-CCccHHHHHHH------HHhC--CCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000322 1295 ---------LELVLMKARLQKHDF-GDLSSVGFEEA------LIKW--PKGVPGIQCIWNQYVEYALQNGRHDFAAELMD 1356 (1670)
Q Consensus 1295 ---------~eL~L~AAyL~~K~m-~~~A~svle~A------L~~~--PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~ 1356 (1670)
-++..+|.|.+.+++ -..|+..|.+| |++. -.-.. =.|||---+..+.=.+.++=|.
T Consensus 1013 ~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~-----aL~lIa~DLd~~sDp~ll~Rca 1087 (1416)
T KOG3617|consen 1013 ANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFS-----ALDLIAKDLDAGSDPKLLRRCA 1087 (1416)
T ss_pred HHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccH-----HHHHHHHhcCCCCCHHHHHHHH
Confidence 234566778877763 55666655543 3222 11222 2466766777777777888888
Q ss_pred HHHHhhhhccc---------ccccchhhhcccCCCCCCCCC----CCCCcccccccccchhhHHHHHHHHHHHhhhcCHH
Q 000322 1357 RWFHSVWKVQY---------SQVEISDPLVADMSHSSPEST----STSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWN 1423 (1670)
Q Consensus 1357 ~ff~gia~~Q~---------~~deALDaLrkgns~i~~es~----s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~ 1423 (1670)
.||.....+++ +..+||.++...|-+++.+.. +.-.+||-...+. .+.-+++++..+ +|.+.
T Consensus 1088 dFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~---~vLeqvae~c~q--QG~Yh 1162 (1416)
T KOG3617|consen 1088 DFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERK---QVLEQVAELCLQ--QGAYH 1162 (1416)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHH---HHHHHHHHHHHh--ccchH
Confidence 89999999887 788889888877777765542 2112333322223 356889999999 99998
Q ss_pred HHHHHHHHH
Q 000322 1424 EARLAIDAA 1432 (1670)
Q Consensus 1424 EAfaAYDKA 1432 (1670)
-|-.-|-.|
T Consensus 1163 ~AtKKfTQA 1171 (1416)
T KOG3617|consen 1163 AATKKFTQA 1171 (1416)
T ss_pred HHHHHHhhh
Confidence 887766554
No 151
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.09 E-value=0.0075 Score=53.61 Aligned_cols=60 Identities=18% Similarity=0.107 Sum_probs=46.2
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHH--HhhcccCCccHHHHHHHHHhCCCCC
Q 000322 1268 IWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKAR--LQKHDFGDLSSVGFEEALIKWPKGV 1328 (1670)
Q Consensus 1268 IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAy--L~~K~m~~~A~svle~AL~~~PkNa 1328 (1670)
.+.++..++.++|+.+|+++++..|.+.+.++..+. +..+ -.++|+..|++++...|+|+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g-~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQG-RYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCcCCC
Confidence 345566779999999999999999999999333333 3333 38899999999999999874
No 152
>PRK11906 transcriptional regulator; Provisional
Probab=96.00 E-value=0.041 Score=67.65 Aligned_cols=94 Identities=16% Similarity=0.175 Sum_probs=76.1
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-----HHH-HHHhcCCCcccchhh
Q 000322 1030 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-----LWL-MYINSRTPLNHRLDA 1103 (1670)
Q Consensus 1030 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-----Lwl-mYInsr~slddrl~~ 1103 (1670)
++++.|+.+|.+|+++||+.+.+||.++.+-.-.|..+++.+.+++|++++|--.. ||. ||-..+ +
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~------~-- 423 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP------L-- 423 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc------h--
Confidence 34799999999999999999999999999888888889999999999999997765 998 999888 3
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhh-hhHHHHHHHHHH
Q 000322 1104 YDAALSVLCRCASASDGDEMHASA-CILDLFLQMLQC 1139 (1670)
Q Consensus 1104 YdkAI~aLe~las~~~~Dr~~~Sa-~iLDILL~LvqL 1139 (1670)
+.||.+| ++... . .|+ -|.|-+|.+-||
T Consensus 424 -~~~~~~~---~~~~~-~---~~~~~~~~~~~~~~~~ 452 (458)
T PRK11906 424 -KNNIKLY---YKETE-S---ESHRVIIDNILKLKQL 452 (458)
T ss_pred -hhhHHHH---hhccc-c---ccchhhHHHHHHHHHH
Confidence 8899999 33331 1 122 456777766655
No 153
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.96 E-value=0.061 Score=62.02 Aligned_cols=108 Identities=12% Similarity=0.076 Sum_probs=91.1
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHH
Q 000322 1030 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1105 (1670)
Q Consensus 1030 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~Yd 1105 (1670)
|+|..|...|.++.+.+|++.++|.-++-.|.+.+..++++..|.+|.++.|.+-. |+-.|+=.+ .++
T Consensus 114 g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~g--------d~~ 185 (257)
T COG5010 114 GNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRG--------DLE 185 (257)
T ss_pred cchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcC--------CHH
Confidence 67899999999999999999999999999999999999999999999999988766 443333334 469
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHH
Q 000322 1106 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRI 1153 (1670)
Q Consensus 1106 kAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti 1153 (1670)
+|...|.+.+..-+.| .-|..-|+-+....|+++.|-.++
T Consensus 186 ~A~~lll~a~l~~~ad--------~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 186 DAETLLLPAYLSPAAD--------SRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HHHHHHHHHHhCCCCc--------hHHHHHHHHHHhhcCChHHHHhhc
Confidence 9999998888776334 457777888889999999997744
No 154
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=95.86 E-value=1 Score=59.70 Aligned_cols=111 Identities=16% Similarity=0.202 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHHHH
Q 000322 1032 MKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAA 1107 (1670)
Q Consensus 1032 ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkA 1107 (1670)
...||..|=++|.+||+=+.+|..+++||.....-.-+..+|.+|.+++|..+. ++-+|.... ..+.|
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~--------~we~a 545 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEES--------TWEEA 545 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccc--------cHHHH
Confidence 588999999999999999999999999998777666688999999999998888 556676665 45555
Q ss_pred HHHHHHh------------------------------------hhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHH
Q 000322 1108 LSVLCRC------------------------------------ASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQ 1151 (1670)
Q Consensus 1108 I~aLe~l------------------------------------as~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ 1151 (1670)
..+.-+. .+..|.| ...|+.+.+.|..+|+|.-|+.
T Consensus 546 ~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD--------~n~W~gLGeAY~~sGry~~AlK 617 (1238)
T KOG1127|consen 546 FEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKD--------YNLWLGLGEAYPESGRYSHALK 617 (1238)
T ss_pred HHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchh--------HHHHHHHHHHHHhcCceehHHH
Confidence 5543221 1222222 5678888888888888888888
Q ss_pred HHHhhcc
Q 000322 1152 RISRLLI 1158 (1670)
Q Consensus 1152 ti~rLEq 1158 (1670)
+.++.-.
T Consensus 618 vF~kAs~ 624 (1238)
T KOG1127|consen 618 VFTKASL 624 (1238)
T ss_pred hhhhhHh
Confidence 6665554
No 155
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=95.84 E-value=0.032 Score=71.00 Aligned_cols=130 Identities=18% Similarity=0.102 Sum_probs=103.6
Q ss_pred HHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhc
Q 000322 1018 ALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINS 1093 (1670)
Q Consensus 1018 Al~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYIns 1093 (1670)
|..+++...-..++|.+|..-|.+.|++||--...||.+...+.+..+-..+.++|-++|.++|++.. |.-.||..
T Consensus 487 A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~ 566 (777)
T KOG1128|consen 487 AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRL 566 (777)
T ss_pred HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHH
Confidence 55565555544578899999999999999999999999999988999888899999999999999998 44556666
Q ss_pred CCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCC
Q 000322 1094 RTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGS 1163 (1670)
Q Consensus 1094 r~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g 1163 (1670)
+ +-.+|...+-++.+.+ -+. --+|.--+-+....|+++.||+.+-||+.-..++
T Consensus 567 ~--------~k~ra~~~l~EAlKcn-~~~-------w~iWENymlvsvdvge~eda~~A~~rll~~~~~~ 620 (777)
T KOG1128|consen 567 K--------KKKRAFRKLKEALKCN-YQH-------WQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKY 620 (777)
T ss_pred h--------hhHHHHHHHHHHhhcC-CCC-------CeeeechhhhhhhcccHHHHHHHHHHHHHhhhhc
Confidence 6 5578888887777766 444 5577777888889999999999999988633333
No 156
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.69 E-value=0.2 Score=60.10 Aligned_cols=234 Identities=15% Similarity=0.074 Sum_probs=125.5
Q ss_pred HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCC
Q 000322 1086 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND 1165 (1670)
Q Consensus 1086 LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~s 1165 (1670)
++..|-..+ +|++|+.+|..+....+++ -++++.|+=++..-|.|..|-+ |-..|.+ +
T Consensus 63 ia~C~fhLg--------dY~~Al~~Y~~~~~~~~~~--------~el~vnLAcc~FyLg~Y~eA~~----~~~ka~k--~ 120 (557)
T KOG3785|consen 63 IAHCYFHLG--------DYEEALNVYTFLMNKDDAP--------AELGVNLACCKFYLGQYIEAKS----IAEKAPK--T 120 (557)
T ss_pred HHHHHHhhc--------cHHHHHHHHHHHhccCCCC--------cccchhHHHHHHHHHHHHHHHH----HHhhCCC--C
Confidence 444555556 8999999998776654334 4556666666666688888866 3332222 2
Q ss_pred cccchHHHHH--HhhccCCcchhhHHHHH----HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHH
Q 000322 1166 RHSLFLSDIL--TCLTISDKLIFWVCCVY----LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAV 1239 (1670)
Q Consensus 1166 E~~lSLsKi~--~YLt~sDR~~AWL~~iY----llrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~smA~ 1239 (1670)
| .-.++. +-...+|.+. |+..-- -++-+.-++.+--..-..+||.++ |.+++.++|+....-+.||+
T Consensus 121 p---L~~RLlfhlahklndEk~-~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdv---YkrvL~dn~ey~alNVy~AL 193 (557)
T KOG3785|consen 121 P---LCIRLLFHLAHKLNDEKR-ILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDV---YKRVLQDNPEYIALNVYMAL 193 (557)
T ss_pred h---HHHHHHHHHHHHhCcHHH-HHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHH---HHHHHhcChhhhhhHHHHHH
Confidence 2 000111 1122223211 221110 001111111221122357899999 99999999998877778877
Q ss_pred HHHhhhcCC---cchhhhhhhchhhHhHHHHHHHHH--H-hc--CHHHHHHHHHHHHHhCCCchhHHHHHHHHhhcccCC
Q 000322 1240 NSVELYSNG---ESLEKETNLRSAHCFAVNHIWCMA--V-LN--GLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGD 1311 (1670)
Q Consensus 1240 dYY~~~~nd---esla~~~~~kt~~~fKLN~IR~lI--~-LE--Dse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m~~ 1311 (1670)
=||..+--+ +-+..-...--+.-+++|+..|.. . ++ --++..+|.+-+-+.+|.-.+| +--.|-.-.+.+
T Consensus 194 CyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l--~rHNLVvFrngE 271 (557)
T KOG3785|consen 194 CYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYL--CRHNLVVFRNGE 271 (557)
T ss_pred HHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHH--HHcCeEEEeCCc
Confidence 666642221 111111111122223333322221 1 22 2344455666666555543333 111122222367
Q ss_pred ccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000322 1312 LSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1357 (1670)
Q Consensus 1312 ~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ 1357 (1670)
.|..|+-..+..-|. +|.-||-+.++++|..+|+.||+.
T Consensus 272 gALqVLP~L~~~IPE-------ARlNL~iYyL~q~dVqeA~~L~Kd 310 (557)
T KOG3785|consen 272 GALQVLPSLMKHIPE-------ARLNLIIYYLNQNDVQEAISLCKD 310 (557)
T ss_pred cHHHhchHHHhhChH-------hhhhheeeecccccHHHHHHHHhh
Confidence 777787777777663 788889999999999999999998
No 157
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.59 E-value=0.021 Score=48.35 Aligned_cols=42 Identities=24% Similarity=0.253 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000322 1012 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLL 1058 (1670)
Q Consensus 1012 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~ 1058 (1670)
+.|+.+|.-+...+ +++.|..+|+++|+.+|+++++|+.|+.
T Consensus 2 ~~~~~la~~~~~~G-----~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLG-----QPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 35666666666653 3477777777777777777777776654
No 158
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.58 E-value=0.2 Score=59.59 Aligned_cols=229 Identities=18% Similarity=0.126 Sum_probs=145.2
Q ss_pred HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCC
Q 000322 1086 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND 1165 (1670)
Q Consensus 1086 LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~s 1165 (1670)
++-.|+..+ .|-+|-..|-...+.+ +- .|.++.|.+.|..-..-..|+.+|..-+. .-
T Consensus 229 ~gkCylrLg--------m~r~AekqlqssL~q~-~~--------~dTfllLskvY~ridQP~~AL~~~~~gld-----~f 286 (478)
T KOG1129|consen 229 MGKCYLRLG--------MPRRAEKQLQSSLTQF-PH--------PDTFLLLSKVYQRIDQPERALLVIGEGLD-----SF 286 (478)
T ss_pred HHHHHHHhc--------ChhhhHHHHHHHhhcC-Cc--------hhHHHHHHHHHHHhccHHHHHHHHhhhhh-----cC
Confidence 455677777 7888888886666666 33 68888888888888888778775533221 11
Q ss_pred cccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhh
Q 000322 1166 RHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELY 1245 (1670)
Q Consensus 1166 E~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~~~ 1245 (1670)
| +++.|..=-+-++.--|...+++.+ |..++|-+|.|+-++..-|+.||=
T Consensus 287 P-------------------------~~VT~l~g~ARi~eam~~~~~a~~l---Yk~vlk~~~~nvEaiAcia~~yfY-- 336 (478)
T KOG1129|consen 287 P-------------------------FDVTYLLGQARIHEAMEQQEDALQL---YKLVLKLHPINVEAIACIAVGYFY-- 336 (478)
T ss_pred C-------------------------chhhhhhhhHHHHHHHHhHHHHHHH---HHHHHhcCCccceeeeeeeecccc--
Confidence 1 0222222222223333444455555 555666666666555544433332
Q ss_pred cCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH----HHHHHHHhhcccCCccHHHHHHHH
Q 000322 1246 SNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL----VLMKARLQKHDFGDLSSVGFEEAL 1321 (1670)
Q Consensus 1246 ~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL----~L~AAyL~~K~m~~~A~svle~AL 1321 (1670)
-+..|-|+..|.++|++--.+.+| -|++-|-+.- +-+.+-|++|+
T Consensus 337 ----------------------------~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~---D~~L~sf~RAl 385 (478)
T KOG1129|consen 337 ----------------------------DNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQI---DLVLPSFQRAL 385 (478)
T ss_pred ----------------------------CCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcch---hhhHHHHHHHH
Confidence 125666777788888888888777 6777664443 46678889998
Q ss_pred HhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCccccccccc
Q 000322 1322 IKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRN 1401 (1670)
Q Consensus 1322 ~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~ 1401 (1670)
+..-+..+ ..-+|+-|-..++.-||+..|.+-.+- +|-..+.+ ++
T Consensus 386 stat~~~~-aaDvWYNlg~vaV~iGD~nlA~rcfrl-----------------aL~~d~~h----------~e------- 430 (478)
T KOG1129|consen 386 STATQPGQ-AADVWYNLGFVAVTIGDFNLAKRCFRL-----------------ALTSDAQH----------GE------- 430 (478)
T ss_pred hhccCcch-hhhhhhccceeEEeccchHHHHHHHHH-----------------HhccCcch----------HH-------
Confidence 87654333 345899998899988888888765432 11111111 11
Q ss_pred chhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccC
Q 000322 1402 QMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAAS 1438 (1670)
Q Consensus 1402 q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~ 1438 (1670)
++-|++....-+|+..+|...|..|-..+|+
T Consensus 431 ------alnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 431 ------ALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred ------HHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 6666766666699999999999999988885
No 159
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.53 E-value=0.14 Score=56.18 Aligned_cols=142 Identities=15% Similarity=0.154 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH--
Q 000322 1011 NEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPT---SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-- 1085 (1670)
Q Consensus 1011 ~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPt---SaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-- 1085 (1670)
.+.+...|...+.. |+|..|...|...+...|+ .+.+++.++..|+..+.-..+...|++-++..|.+-.
T Consensus 5 ~~~lY~~a~~~~~~-----g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~ 79 (203)
T PF13525_consen 5 AEALYQKALEALQQ-----GDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD 79 (203)
T ss_dssp HHHHHHHHHHHHHC-----T-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH
T ss_pred HHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence 45666777777776 5689999999999999987 5688999999999999999999999999999998765
Q ss_pred -----HHHHHHhcCCCc---ccchhhHHHHHHHHHHhhhcCCCCcchhhh----------hhHHHHHHHHHHHHHhcCHH
Q 000322 1086 -----LWLMYINSRTPL---NHRLDAYDAALSVLCRCASASDGDEMHASA----------CILDLFLQMLQCFCMSGNTE 1147 (1670)
Q Consensus 1086 -----LwlmYInsr~sl---ddrl~~YdkAI~aLe~las~~~~Dr~~~Sa----------~iLDILL~LvqLY~qSGnyd 1147 (1670)
+++.|.+..... .-+.....+|+..|..+...+ |+-.+..- .+-+--+...++|...|.|.
T Consensus 80 ~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-P~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~ 158 (203)
T PF13525_consen 80 YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-PNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYK 158 (203)
T ss_dssp HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH--TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HH
T ss_pred hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 334443332112 333445678999999999999 44222211 23333456678888888888
Q ss_pred HHHHHHHhhcc
Q 000322 1148 KAIQRISRLLI 1158 (1670)
Q Consensus 1148 KAI~ti~rLEq 1158 (1670)
.|+.+++.+..
T Consensus 159 aA~~r~~~v~~ 169 (203)
T PF13525_consen 159 AAIIRFQYVIE 169 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888877775
No 160
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.49 E-value=0.038 Score=49.20 Aligned_cols=48 Identities=27% Similarity=0.456 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000322 1103 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1103 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1158 (1670)
.|++|+..|.++...+ |+. .++++.|+++|..+|++++|...+.++..
T Consensus 6 ~~~~A~~~~~~~l~~~-p~~-------~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 6 DYDEAIELLEKALQRN-PDN-------PEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHHHHHHHHHHHHHHT-TTS-------HHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred CHHHHHHHHHHHHHHC-CCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7999999999999999 566 89999999999999999999999988886
No 161
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.32 E-value=0.15 Score=59.04 Aligned_cols=140 Identities=19% Similarity=0.214 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000322 1278 ECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1357 (1670)
Q Consensus 1278 e~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ 1357 (1670)
..+..-+-......|.|.++..++.-+.+.+-.+.+..+..+++...|+....+.. ++...++.|++..|+...++
T Consensus 50 ~~a~~al~~~~~~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~----~gk~~~~~g~~~~A~~~~rk 125 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSIAKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAA----QGKNQIRNGNFGEAVSVLRK 125 (257)
T ss_pred hHHHHHHHHHHhcCcchHHHHHHHHHHHhcccccchHHHHhhhhccCcccHHHHHH----HHHHHHHhcchHHHHHHHHH
Confidence 34666777888899999999333333344433778889999999999998773322 68889999999998888755
Q ss_pred HHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhcc
Q 000322 1358 WFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAA 1437 (1670)
Q Consensus 1358 ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp 1437 (1670)
+.+ ..| . ...++ ..+|.+|-+ -|+.++|..+|-+||+..|
T Consensus 126 -----------------A~~--l~p--~------d~~~~-----------~~lgaaldq--~Gr~~~Ar~ay~qAl~L~~ 165 (257)
T COG5010 126 -----------------AAR--LAP--T------DWEAW-----------NLLGAALDQ--LGRFDEARRAYRQALELAP 165 (257)
T ss_pred -----------------Hhc--cCC--C------Chhhh-----------hHHHHHHHH--ccChhHHHHHHHHHHHhcc
Confidence 111 122 1 24456 778899999 9999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhcCCCCCCcccc
Q 000322 1438 SEHFKHCVREHAMLLLINESEPKEGAP 1464 (1670)
Q Consensus 1438 ~N~~i~cLNNYAYFLS~e~~dL~KAeq 1464 (1670)
.+ -..+||.+|-+.+++. +.+|+.
T Consensus 166 ~~--p~~~nNlgms~~L~gd-~~~A~~ 189 (257)
T COG5010 166 NE--PSIANNLGMSLLLRGD-LEDAET 189 (257)
T ss_pred CC--chhhhhHHHHHHHcCC-HHHHHH
Confidence 99 8899999999998873 444443
No 162
>PRK15331 chaperone protein SicA; Provisional
Probab=95.32 E-value=0.12 Score=56.45 Aligned_cols=118 Identities=14% Similarity=0.078 Sum_probs=94.1
Q ss_pred ccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH---
Q 000322 1009 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--- 1085 (1670)
Q Consensus 1009 ~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~--- 1085 (1670)
.+.+.|.+.-..-+..+.+ |.-...+.+..=+..|.++--+++.|+-.++..+|+-.+-++|.|+.
T Consensus 7 ~~~~~~~~~i~~al~~G~t-----------lk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~ 75 (165)
T PRK15331 7 VSEERVAEMIWDAVSEGAT-----------LKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTM 75 (165)
T ss_pred hhHHHHHHHHHHHHHCCCC-----------HHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence 4456677776777776654 66667788888888899999999999999999999999999998877
Q ss_pred -HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHH
Q 000322 1086 -LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRI 1153 (1670)
Q Consensus 1086 -LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti 1153 (1670)
|+..|.-.+ .|++|+.+|.-.+.-...| --+.+.+.+||.+-|+.++|+..+
T Consensus 76 GLaa~~Q~~k--------~y~~Ai~~Y~~A~~l~~~d--------p~p~f~agqC~l~l~~~~~A~~~f 128 (165)
T PRK15331 76 GLAAVCQLKK--------QFQKACDLYAVAFTLLKND--------YRPVFFTGQCQLLMRKAAKARQCF 128 (165)
T ss_pred HHHHHHHHHH--------HHHHHHHHHHHHHHcccCC--------CCccchHHHHHHHhCCHHHHHHHH
Confidence 777888888 9999999997666544223 335889999999999999999844
No 163
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.22 E-value=0.73 Score=53.69 Aligned_cols=181 Identities=14% Similarity=0.081 Sum_probs=117.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCchhH-HHHHHH
Q 000322 1226 DEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAV-LNGLECSMNLLEKYIKLYPSCLEL-VLMKAR 1303 (1670)
Q Consensus 1226 dEPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~-LEDse~A~~LfdklLk~~P~d~eL-~L~AAy 1303 (1670)
-.|+.++++.+--..|+... + ..-+..+-+.++-+... .+...-|....+++-..-|.+.-+ -|+|-+
T Consensus 26 rnseevv~l~~~~~~~~k~~-----~-----~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~ 95 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSG-----A-----LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAML 95 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhc-----c-----cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 46788888886534455431 0 12224444442222222 447777777888888888999999 899999
Q ss_pred HhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccc-------------ccc
Q 000322 1304 LQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQY-------------SQV 1370 (1670)
Q Consensus 1304 L~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~-------------~~d 1370 (1670)
|+.+++-++|+..|+..|+.+|.|.. ++-.=|-....+|+--.||+-...|..-|.-.+. ...
T Consensus 96 lEa~~~~~~A~e~y~~lL~ddpt~~v----~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~ 171 (289)
T KOG3060|consen 96 LEATGNYKEAIEYYESLLEDDPTDTV----IRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFE 171 (289)
T ss_pred HHHhhchhhHHHHHHHHhccCcchhH----HHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHH
Confidence 99988888999999999999999988 4444466677777777888888887666655543 222
Q ss_pred cchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhc---CHHHHHHHHHHHHhhccCC
Q 000322 1371 EISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQN---DWNEARLAIDAALKAAASE 1439 (1670)
Q Consensus 1371 eALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg---~~~EAfaAYDKALkanp~N 1439 (1670)
.|.=-+..-+ +..|.+- +.|.-+++.+|. +| ++.-|..-|++||+.+|.+
T Consensus 172 kA~fClEE~l---------------l~~P~n~--l~f~rlae~~Yt--~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 172 KAAFCLEELL---------------LIQPFNP--LYFQRLAEVLYT--QGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred HHHHHHHHHH---------------HcCCCcH--HHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHhChHh
Confidence 2222222110 0111111 457788887776 55 4556778888888888865
No 164
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.15 E-value=0.035 Score=47.00 Aligned_cols=43 Identities=5% Similarity=0.172 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHh
Q 000322 1050 EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYIN 1092 (1670)
Q Consensus 1050 aeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYIn 1092 (1670)
+++|+.|+..|...|+..++.++|+++++.+|+|...|.++..
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 5789999999999999999999999999999999999988753
No 165
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.09 E-value=0.25 Score=54.20 Aligned_cols=129 Identities=14% Similarity=0.160 Sum_probs=97.9
Q ss_pred hhhhccccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhCCCC-----------ch
Q 000322 1003 KLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSE---ILWITYLLIFYSNTNS-----------VG 1068 (1670)
Q Consensus 1003 ~le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSa---eaWy~yl~lY~~~~~~-----------ee 1068 (1670)
+--.++.-.+.++.+|..+... |+|+.|...|.+-++.+|+++ .++|..+..++....+ ..
T Consensus 34 ~~P~s~~a~~A~l~la~a~y~~-----~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~ 108 (203)
T PF13525_consen 34 RYPNSPYAPQAQLMLAYAYYKQ-----GDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRK 108 (203)
T ss_dssp H-TTSTTHHHHHHHHHHHHHHT-----T-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHH
T ss_pred HCCCChHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHH
Confidence 3334455557888888877766 568999999999999999966 5788877776654322 24
Q ss_pred HHHHHHHHHhhCCCCHH---------------------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhh
Q 000322 1069 KDDMFSYSVKHNEGSYA---------------------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASA 1127 (1670)
Q Consensus 1069 a~emlekAVelnP~NY~---------------------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa 1127 (1670)
+...|+.-++.-|++.. ++.+|.+.+ .|..|+.-+..+...+ |+ |-
T Consensus 109 A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~--------~y~aA~~r~~~v~~~y-p~----t~ 175 (203)
T PF13525_consen 109 AIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRG--------KYKAAIIRFQYVIENY-PD----TP 175 (203)
T ss_dssp HHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT---------HHHHHHHHHHHHHHS-TT----SH
T ss_pred HHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--------cHHHHHHHHHHHHHHC-CC----Cc
Confidence 77899999999998865 678888888 9999999999999999 55 35
Q ss_pred hhHHHHHHHHHHHHHhcCHHHH
Q 000322 1128 CILDLFLQMLQCFCMSGNTEKA 1149 (1670)
Q Consensus 1128 ~iLDILL~LvqLY~qSGnydKA 1149 (1670)
...|.+..|+..|..-|..+.|
T Consensus 176 ~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 176 AAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHH
T ss_pred hHHHHHHHHHHHHHHhCChHHH
Confidence 6789999999999999998854
No 166
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.78 E-value=0.023 Score=46.45 Aligned_cols=32 Identities=9% Similarity=0.204 Sum_probs=27.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhCCCCchH
Q 000322 1038 LLSRALEADPTSEILWITYLLIFYSNTNSVGK 1069 (1670)
Q Consensus 1038 LLsrALEINPtSaeaWy~yl~lY~~~~~~eea 1069 (1670)
.|.+|||+||+++.+|+.|+.+|...|..+++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 37899999999999999999999988875544
No 167
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.52 E-value=0.35 Score=59.08 Aligned_cols=185 Identities=18% Similarity=0.070 Sum_probs=131.5
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHHH
Q 000322 1030 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALS 1109 (1670)
Q Consensus 1030 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~ 1109 (1670)
+.|+.|.++=-+.|..|++++++.|.-..++|...+-..+...|++|+.++|+-+..-.+|..-+
T Consensus 183 ~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k--------------- 247 (486)
T KOG0550|consen 183 GDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPK--------------- 247 (486)
T ss_pred ccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHH---------------
Confidence 56799999999999999999999999999988888888899999999999999999888887666
Q ss_pred HHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHH
Q 000322 1110 VLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVC 1189 (1670)
Q Consensus 1110 aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~ 1189 (1670)
.|+..-.+ . .-...+|+|.+|-..+ ..|+.. +| +.+ .-++
T Consensus 248 ~le~~k~~---g----------------N~~fk~G~y~~A~E~Y----teal~i-dP--------------~n~--~~na 287 (486)
T KOG0550|consen 248 KLEVKKER---G----------------NDAFKNGNYRKAYECY----TEALNI-DP--------------SNK--KTNA 287 (486)
T ss_pred HHHHHHhh---h----------------hhHhhccchhHHHHHH----HHhhcC-Cc--------------ccc--chhH
Confidence 22222111 1 1234689999998743 333442 44 122 1122
Q ss_pred HHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHH
Q 000322 1190 CVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIW 1269 (1670)
Q Consensus 1190 ~iYllrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR 1269 (1670)
..|. . .+-+....++.+||+.- +..+++.||...-+++-- -+
T Consensus 288 klY~----n-ra~v~~rLgrl~eaisd---c~~Al~iD~syikall~r------------------------------a~ 329 (486)
T KOG0550|consen 288 KLYG----N-RALVNIRLGRLREAISD---CNEALKIDSSYIKALLRR------------------------------AN 329 (486)
T ss_pred HHHH----H-hHhhhcccCCchhhhhh---hhhhhhcCHHHHHHHHHH------------------------------HH
Confidence 2221 1 12334456777888876 677777777777777654 35
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcc
Q 000322 1270 CMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHD 1308 (1670)
Q Consensus 1270 ~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~ 1308 (1670)
|++++|+++.|++-|.++|+.-.+ +++ +|.-+-+..|+
T Consensus 330 c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkk 369 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKK 369 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHH
Confidence 677889999999999999999988 666 66666655553
No 168
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=94.48 E-value=0.92 Score=51.77 Aligned_cols=129 Identities=13% Similarity=0.061 Sum_probs=98.7
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhCC---------------CC---chHH
Q 000322 1012 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSE---ILWITYLLIFYSNT---------------NS---VGKD 1070 (1670)
Q Consensus 1012 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSa---eaWy~yl~lY~~~~---------------~~---eea~ 1070 (1670)
+..+.+|.-++.. ++|+.|...|++.++.+|+++ .++|.++..+...+ +. ..+.
T Consensus 70 ~a~l~la~ayy~~-----~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~ 144 (243)
T PRK10866 70 QVQLDLIYAYYKN-----ADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAF 144 (243)
T ss_pred HHHHHHHHHHHhc-----CCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHH
Confidence 5556666666665 457999999999999999865 45666665432221 01 2356
Q ss_pred HHHHHHHhhCCCCHH---------------------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhh
Q 000322 1071 DMFSYSVKHNEGSYA---------------------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACI 1129 (1670)
Q Consensus 1071 emlekAVelnP~NY~---------------------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~i 1129 (1670)
+.|+.-|+.-|++-. ++-+|.+.+ .|..|+.-+..+...+ |+ |-..
T Consensus 145 ~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~--------~y~AA~~r~~~v~~~Y-p~----t~~~ 211 (243)
T PRK10866 145 RDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRG--------AYVAVVNRVEQMLRDY-PD----TQAT 211 (243)
T ss_pred HHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------chHHHHHHHHHHHHHC-CC----CchH
Confidence 889999999998876 566788877 8999999999999998 44 3456
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000322 1130 LDLFLQMLQCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1130 LDILL~LvqLY~qSGnydKAI~ti~rLEq 1158 (1670)
.|.|..|+.-|...|..+.|..++..|..
T Consensus 212 ~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 212 RDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 99999999999999999999887766653
No 169
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.19 E-value=0.11 Score=64.02 Aligned_cols=66 Identities=14% Similarity=-0.013 Sum_probs=58.8
Q ss_pred HhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCH-------HHHHHHHhcCCCcccchhhHHHHHHHHHHhhh
Q 000322 1044 EADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY-------ALWLMYINSRTPLNHRLDAYDAALSVLCRCAS 1116 (1670)
Q Consensus 1044 EINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY-------~LwlmYInsr~slddrl~~YdkAI~aLe~las 1116 (1670)
+.+|+.+++|+.++..|+..+..+++.++|++|++++|++. .++..|..++ .+++|+..|.++.+
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LG--------r~dEAla~LrrALe 140 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYRE--------EGKKAADCLRTALR 140 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999963 4999999999 77888888877766
Q ss_pred c
Q 000322 1117 A 1117 (1670)
Q Consensus 1117 ~ 1117 (1670)
.
T Consensus 141 l 141 (453)
T PLN03098 141 D 141 (453)
T ss_pred h
Confidence 4
No 170
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.95 E-value=0.081 Score=41.30 Aligned_cols=34 Identities=12% Similarity=0.175 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCC
Q 000322 1050 EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1083 (1670)
Q Consensus 1050 aeaWy~yl~lY~~~~~~eea~emlekAVelnP~N 1083 (1670)
|++|+.++.+|+..++-.++.+.|++|++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 5789999999999999999999999999999875
No 171
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=93.78 E-value=0.19 Score=45.34 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=49.0
Q ss_pred HHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCc
Q 000322 1057 LLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDE 1122 (1670)
Q Consensus 1057 l~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr 1122 (1670)
..+|.+.+.-+.+.+.++++++++|++.. .+.+|...+ .|.+|+..|++..+.. |+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g--------~~~~A~~~l~~~l~~~-p~~ 62 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLG--------RYEEALEDLERALELS-PDD 62 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhc--------cHHHHHHHHHHHHHHC-CCc
Confidence 46778888889999999999999999988 456777777 8999999999999888 554
No 172
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.61 E-value=0.53 Score=57.36 Aligned_cols=92 Identities=15% Similarity=0.174 Sum_probs=69.2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Q 000322 1265 VNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYA 1342 (1670)
Q Consensus 1265 LN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~a 1342 (1670)
+|+..|++-+.+..+|+..|.++|+..|.++.- .=--++|.+.. -+.|+..|++|+..+|.|.. +..||+.+.
T Consensus 261 lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e-~~~A~~df~ka~k~~P~Nka----~~~el~~l~ 335 (397)
T KOG0543|consen 261 LNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGE-YDLARDDFQKALKLEPSNKA----ARAELIKLK 335 (397)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhcc-HHHHHHHHHHHHHhCCCcHH----HHHHHHHHH
Confidence 377777777889999999999999999999987 33334455554 77999999999999999998 998888877
Q ss_pred HHcCChHHHHHHHHHHHHhhhh
Q 000322 1343 LQNGRHDFAAELMDRWFHSVWK 1364 (1670)
Q Consensus 1343 l~~en~d~Ai~Lc~~ff~gia~ 1364 (1670)
..-..+... -+++|..++.
T Consensus 336 ~k~~~~~~k---ekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEK---EKKMYANMFA 354 (397)
T ss_pred HHHHHHHHH---HHHHHHHHhh
Confidence 654333332 2334555443
No 173
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=93.57 E-value=0.64 Score=54.92 Aligned_cols=134 Identities=18% Similarity=0.220 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHhhcccCCccH-HHHHHHHHhCCCCCchHHHHHHHHHHHHHHc---CChHHHHH
Q 000322 1278 ECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSS-VGFEEALIKWPKGVPGIQCIWNQYVEYALQN---GRHDFAAE 1353 (1670)
Q Consensus 1278 e~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m~~~A~-svle~AL~~~PkNa~g~~caW~QLIq~al~~---en~d~Ai~ 1353 (1670)
+.-+.+++++|+.+|.+..|++....+-.+-.+.+.+ .-|+.++...|++.. +|..||.+.... -.++.+..
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~----LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPE----LWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChH----HHHHHHHHHHHHhccCcHHHHHH
Confidence 4567899999999999999965544443332244444 899999999999999 999999988874 24556666
Q ss_pred HHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHH
Q 000322 1354 LMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAAL 1433 (1670)
Q Consensus 1354 Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKAL 1433 (1670)
+..+.+..+....... ..++ .-..+ ....++..++..|.+.+--|-.+.|++++...|
T Consensus 124 ~y~~~l~~L~~~~~~~---------~~~~-------~~~~~------~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~l 181 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGR---------MTSH-------PDLPE------LEEFMLYVFLRLCRFLRQAGYTERAVALWQALL 181 (321)
T ss_pred HHHHHHHHHHHhhccc---------cccc-------cchhh------HHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHH
Confidence 5555443333222211 0011 00111 123355677777888888999999999998888
Q ss_pred hhcc
Q 000322 1434 KAAA 1437 (1670)
Q Consensus 1434 kanp 1437 (1670)
..|=
T Consensus 182 E~n~ 185 (321)
T PF08424_consen 182 EFNF 185 (321)
T ss_pred HHHc
Confidence 7764
No 174
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.50 E-value=0.41 Score=59.77 Aligned_cols=87 Identities=11% Similarity=0.085 Sum_probs=74.3
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHH----HHHHhcCCCcccchh
Q 000322 1027 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALW----LMYINSRTPLNHRLD 1102 (1670)
Q Consensus 1027 n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~Lw----lmYInsr~slddrl~ 1102 (1670)
++.|+|..|...|..||.-+|+++.+|+..+..|...+....+..-++++++++|.....| ..+.-.+
T Consensus 369 Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk-------- 440 (539)
T KOG0548|consen 369 FKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMK-------- 440 (539)
T ss_pred HhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH--------
Confidence 6789999999999999999999999999999999999999999999999999998776632 2222333
Q ss_pred hHHHHHHHHHHhhhcCCCCc
Q 000322 1103 AYDAALSVLCRCASASDGDE 1122 (1670)
Q Consensus 1103 ~YdkAI~aLe~las~~~~Dr 1122 (1670)
.|++|+++|....... |+.
T Consensus 441 ~ydkAleay~eale~d-p~~ 459 (539)
T KOG0548|consen 441 EYDKALEAYQEALELD-PSN 459 (539)
T ss_pred HHHHHHHHHHHHHhcC-chh
Confidence 7999999998887776 554
No 175
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=93.45 E-value=0.57 Score=48.61 Aligned_cols=90 Identities=18% Similarity=0.164 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcc
Q 000322 1051 ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEM 1123 (1670)
Q Consensus 1051 eaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~ 1123 (1670)
+++|+++..|-..|..+++...|++|++.-.+... |+..|.+.+ .|++|+.+|.+....+|.+-
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG--------~~deA~~~L~~~~~~~p~~~- 72 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLG--------RYDEALALLEEALEEFPDDE- 72 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHCCCcc-
Confidence 45666666666666666666666666665444332 445555555 56666666666666552211
Q ss_pred hhhhhhHHHHHHHHHHHHHhcCHHHHHHHH
Q 000322 1124 HASACILDLFLQMLQCFCMSGNTEKAIQRI 1153 (1670)
Q Consensus 1124 ~~Sa~iLDILL~LvqLY~qSGnydKAI~ti 1153 (1670)
.+.. +.+++.| .+...|+++.|+..+
T Consensus 73 -~~~~-l~~f~Al--~L~~~gr~~eAl~~~ 98 (120)
T PF12688_consen 73 -LNAA-LRVFLAL--ALYNLGRPKEALEWL 98 (120)
T ss_pred -ccHH-HHHHHHH--HHHHCCCHHHHHHHH
Confidence 1111 2233332 445556666666644
No 176
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=93.44 E-value=1.1 Score=56.65 Aligned_cols=129 Identities=10% Similarity=0.016 Sum_probs=91.6
Q ss_pred hhhhccccHHHHHHHHHHHhcccc---cchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 000322 1003 KLKQVELSNEQCVEMALLILNQDA---NKLEGMKKALSLLSRALEA--DPTSEILWITYLLIFYSNTNSVGKDDMFSYSV 1077 (1670)
Q Consensus 1003 ~le~~~~d~qlWLelAl~~Lnq~~---n~~g~ydAALdLLsrALEI--NPtSaeaWy~yl~lY~~~~~~eea~emlekAV 1077 (1670)
-++..|.....|-.+|.-+..... ...+.+.+|...+.+++++ +|..+.+|..++......++.+++..+|++|+
T Consensus 368 Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl 447 (517)
T PRK10153 368 ILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAI 447 (517)
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 344557777788877765544322 2235678888888888885 88899999999888888888999999999999
Q ss_pred hhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHH
Q 000322 1078 KHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAI 1150 (1670)
Q Consensus 1078 elnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI 1150 (1670)
+++| +.. ++..|.-.+ .+++|++.|.++..-.|.+. -+++.+=..+.-|++...
T Consensus 448 ~L~p-s~~a~~~lG~~~~~~G--------~~~eA~~~~~~A~~L~P~~p----------t~~~~~~~~f~~~~~~~~ 505 (517)
T PRK10153 448 DLEM-SWLNYVLLGKVYELKG--------DNRLAADAYSTAFNLRPGEN----------TLYWIENLVFQTSVETVV 505 (517)
T ss_pred HcCC-CHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhcCCCCc----------hHHHHHhccccccHHHHH
Confidence 9998 433 445555577 78999999999888774432 244444444555554443
No 177
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.42 E-value=0.8 Score=54.85 Aligned_cols=128 Identities=15% Similarity=0.155 Sum_probs=97.6
Q ss_pred ccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH---
Q 000322 1009 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--- 1085 (1670)
Q Consensus 1009 ~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~--- 1085 (1670)
.|.=+.|..++.++.|. ..||.++...|+..|.+....+..+.++-.+++-+++.++|..++++.|.|..
T Consensus 256 ~dTfllLskvY~ridQP-------~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiA 328 (478)
T KOG1129|consen 256 PDTFLLLSKVYQRIDQP-------ERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIA 328 (478)
T ss_pred hhHHHHHHHHHHHhccH-------HHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeee
Confidence 34456677777778776 78999999999999999999999999999999999999999999999999888
Q ss_pred ---HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhccccc
Q 000322 1086 ---LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPAT 1161 (1670)
Q Consensus 1086 ---LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al 1161 (1670)
...+|=+.- +-|+..|-+...---.. -+++.-+-=|-.-.+.||-++..+.|-+.+|.
T Consensus 329 cia~~yfY~~~P----------E~AlryYRRiLqmG~~s--------peLf~NigLCC~yaqQ~D~~L~sf~RAlstat 389 (478)
T KOG1129|consen 329 CIAVGYFYDNNP----------EMALRYYRRILQMGAQS--------PELFCNIGLCCLYAQQIDLVLPSFQRALSTAT 389 (478)
T ss_pred eeeeccccCCCh----------HHHHHHHHHHHHhcCCC--------hHHHhhHHHHHHhhcchhhhHHHHHHHHhhcc
Confidence 334555555 88888887654421011 34555554444445679989998888776554
No 178
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=93.29 E-value=0.21 Score=58.27 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=84.7
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH--HHHHHHh--cCCCcccchhhHH
Q 000322 1030 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--LWLMYIN--SRTPLNHRLDAYD 1105 (1670)
Q Consensus 1030 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~--LwlmYIn--sr~slddrl~~Yd 1105 (1670)
|+++.|+.+|..+ .+.|+.....++|..++....+..+++.+-+.+.++.- |+.-|++ .+ + ..|.
T Consensus 116 ~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g---~---e~~~ 184 (290)
T PF04733_consen 116 GDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATG---G---EKYQ 184 (290)
T ss_dssp CHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHT---T---TCCC
T ss_pred CCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhC---c---hhHH
Confidence 6789999999875 67888888889999999999999999999999876665 4444444 44 1 2679
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Q 000322 1106 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1157 (1670)
Q Consensus 1106 kAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLE 1157 (1670)
+|.-+|+++...++ .. ..++.-++-++.+.|+|+.|...|..-.
T Consensus 185 ~A~y~f~El~~~~~-~t-------~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 185 DAFYIFEELSDKFG-ST-------PKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp HHHHHHHHHHCCS---S-------HHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccC-CC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999998883 33 6778899999999999999999665533
No 179
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.18 E-value=0.1 Score=41.27 Aligned_cols=34 Identities=0% Similarity=0.024 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCC
Q 000322 1050 EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1083 (1670)
Q Consensus 1050 aeaWy~yl~lY~~~~~~eea~emlekAVelnP~N 1083 (1670)
+.+|+.++.+|..++.-.++.+.|++|++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 5688899999999998888999999999998864
No 180
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=93.11 E-value=0.54 Score=54.38 Aligned_cols=105 Identities=16% Similarity=0.101 Sum_probs=78.9
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhh
Q 000322 1028 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDA 1103 (1670)
Q Consensus 1028 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~ 1103 (1670)
....|+.|.+-|.+||-+||+.+.-|..-+..|.+++.=+.+.+-|.+|+++.|+.-- |.+-.+.+. .
T Consensus 22 ~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~--------~ 93 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK--------G 93 (284)
T ss_pred chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc--------c
Confidence 4678999999999999999999999999999999988888889999999999975433 555555566 7
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHh
Q 000322 1104 YDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMS 1143 (1670)
Q Consensus 1104 YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qS 1143 (1670)
|+.||..|-++++-. .. +.=-..+|+..+|...--+-
T Consensus 94 ~~eaI~~Lqra~sl~-r~--~~~~~~~di~~~L~~ak~~~ 130 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSLL-RE--QPFTFGDDIPKALRDAKKKR 130 (284)
T ss_pred ccHHHHHHHHHHHHH-hc--CCCCCcchHHHHHHHHHhCc
Confidence 899999997775422 00 00112377777776544333
No 181
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=93.08 E-value=6 Score=49.63 Aligned_cols=101 Identities=13% Similarity=0.079 Sum_probs=88.1
Q ss_pred HHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHH----HHHHhcCCCcccchhhHHHHHHHHHHhhhc
Q 000322 1042 ALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALW----LMYINSRTPLNHRLDAYDAALSVLCRCASA 1117 (1670)
Q Consensus 1042 ALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~Lw----lmYInsr~slddrl~~YdkAI~aLe~las~ 1117 (1670)
....+|.-.++||-.+.-++..++..++...+..-++.-|+|-|+| .+|+... .+.+|++.|.++.+.
T Consensus 298 ~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~n--------k~~~A~e~~~kal~l 369 (484)
T COG4783 298 AKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEAN--------KAKEAIERLKKALAL 369 (484)
T ss_pred HHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHhc
Confidence 3344499999999999999999999999999999999999999965 5677777 789999999999998
Q ss_pred CCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000322 1118 SDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1118 ~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1158 (1670)
. |+. .=+.+.+.+.|...|+.++||..|++..-
T Consensus 370 ~-P~~-------~~l~~~~a~all~~g~~~eai~~L~~~~~ 402 (484)
T COG4783 370 D-PNS-------PLLQLNLAQALLKGGKPQEAIRILNRYLF 402 (484)
T ss_pred C-CCc-------cHHHHHHHHHHHhcCChHHHHHHHHHHhh
Confidence 8 665 55778889999999999999998888874
No 182
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.98 E-value=2.6 Score=52.39 Aligned_cols=90 Identities=16% Similarity=0.162 Sum_probs=69.0
Q ss_pred HhcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHH
Q 000322 1273 VLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFA 1351 (1670)
Q Consensus 1273 ~LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~A 1351 (1670)
..+|..-|-..|...|...|++.-. .-+..||-..+....|+..|+.++..--+. + .-.+|.-.|.++-.=|++..|
T Consensus 444 ~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~-q-~k~iy~kmi~YEs~~G~lN~v 521 (660)
T COG5107 444 ATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKT-Q-LKRIYDKMIEYESMVGSLNNV 521 (660)
T ss_pred hcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHh-h-hhHHHHHHHHHHHhhcchHHH
Confidence 3446667777899999999988877 666667655543667889999888766665 1 123888889999999999999
Q ss_pred HHHHHHHHHhhhh
Q 000322 1352 AELMDRWFHSVWK 1364 (1670)
Q Consensus 1352 i~Lc~~ff~gia~ 1364 (1670)
+.|-++|+.-++.
T Consensus 522 ~sLe~rf~e~~pQ 534 (660)
T COG5107 522 YSLEERFRELVPQ 534 (660)
T ss_pred HhHHHHHHHHcCc
Confidence 9999998876543
No 183
>PRK04841 transcriptional regulator MalT; Provisional
Probab=92.53 E-value=4.5 Score=53.00 Aligned_cols=120 Identities=12% Similarity=-0.104 Sum_probs=78.3
Q ss_pred hhhHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCC---HH-------HHHHHHhc
Q 000322 1029 LEGMKKALSLLSRALEADPTSE-----ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS---YA-------LWLMYINS 1093 (1670)
Q Consensus 1029 ~g~ydAALdLLsrALEINPtSa-----eaWy~yl~lY~~~~~~eea~emlekAVelnP~N---Y~-------LwlmYIns 1093 (1670)
.|+++.|...+.++++..|... .++..++.++...+...++..+|++|++..... +. ++.+|...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 3678999999999999766533 355667777888888888999999999764321 11 45566666
Q ss_pred CCCcccchhhHHHHHHHHHHhhhcCC--CCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000322 1094 RTPLNHRLDAYDAALSVLCRCASASD--GDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1094 r~slddrl~~YdkAI~aLe~las~~~--~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1158 (1670)
+ .++.|+..+.+...... ... .+....-+...+..++...|+++.|+..+.+...
T Consensus 545 G--------~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~ 601 (903)
T PRK04841 545 G--------FLQAAYETQEKAFQLIEEQHLE--QLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLE 601 (903)
T ss_pred C--------CHHHHHHHHHHHHHHHHHhccc--cccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHH
Confidence 6 66777777766443210 010 0111111234567778888999999986665543
No 184
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.31 E-value=2.8 Score=40.56 Aligned_cols=115 Identities=20% Similarity=0.282 Sum_probs=87.8
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHhCCCCchHHHHHHHHHhhCCC--CHH-----HHHHHHhcCCCcccc
Q 000322 1029 LEGMKKALSLLSRALEADPTSEILWITYLL-IFYSNTNSVGKDDMFSYSVKHNEG--SYA-----LWLMYINSRTPLNHR 1100 (1670)
Q Consensus 1029 ~g~ydAALdLLsrALEINPtSaeaWy~yl~-lY~~~~~~eea~emlekAVelnP~--NY~-----LwlmYInsr~slddr 1100 (1670)
.+.+..|+.++..+++.++.....+..+.. +|...+.-..+...|++|+..+|. .+. +..+|....
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 181 (291)
T COG0457 108 LGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALG------ 181 (291)
T ss_pred HhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhc------
Confidence 355789999999999999998776776666 788888888899999999887763 333 222233333
Q ss_pred hhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000322 1101 LDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1101 l~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1158 (1670)
.++.|+..+.+.....+... ...+..+...|...+.+++|+..+.+...
T Consensus 182 --~~~~a~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 182 --RYEEALELLEKALKLNPDDD-------AEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred --CHHHHHHHHHHHHhhCcccc-------hHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 78999999988888773312 67888899999999999999997766664
No 185
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.26 E-value=0.24 Score=38.70 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHhhccCC
Q 000322 1408 GYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1439 (1670)
Q Consensus 1408 a~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N 1439 (1670)
-.||.+++. .|++++|..+|++||..+|+|
T Consensus 5 ~~lg~~~~~--~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 5 YYLGQAYYQ--LGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHH--TT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHH--hCCHHHHHHHHHHHHHHCcCC
Confidence 578888888 999999999999999999975
No 186
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.10 E-value=0.54 Score=53.82 Aligned_cols=117 Identities=15% Similarity=0.195 Sum_probs=72.3
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH--HHHHHHhcCCCcccchhhHH
Q 000322 1028 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--LWLMYINSRTPLNHRLDAYD 1105 (1670)
Q Consensus 1028 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~--LwlmYInsr~slddrl~~Yd 1105 (1670)
-.|+||+|++.|.-.||.||+..=+...-+.-+|--+....+++-|.+-.+-+|.+-. ||++.+.++ ++ =.
T Consensus 111 ~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k--~d-----P~ 183 (297)
T COG4785 111 QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQK--LD-----PK 183 (297)
T ss_pred hcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhh--CC-----HH
Confidence 3477899999999999999986554444433333444566777777777777776544 655444333 22 12
Q ss_pred HHHHHHHHh-----------------------------hhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHH
Q 000322 1106 AALSVLCRC-----------------------------ASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQ 1151 (1670)
Q Consensus 1106 kAI~aLe~l-----------------------------as~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ 1151 (1670)
+|..-|-+. +.++..+++...-.+++..+++.+.|.+.|..+.|..
T Consensus 184 ~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~ 258 (297)
T COG4785 184 QAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATA 258 (297)
T ss_pred HHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 333333222 3333234434455678888888888888888888866
No 187
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=91.87 E-value=0.16 Score=38.72 Aligned_cols=27 Identities=30% Similarity=0.765 Sum_probs=25.1
Q ss_pred HHHHHHhhhccccchHHHHHHHHhhhc
Q 000322 1624 SERFFKRALSVYPFSIKLWKCYYDLSK 1650 (1670)
Q Consensus 1624 ~~rfy~~AlsvyPfS~~LW~~y~~~~~ 1650 (1670)
++..|++|+...|.+..+|.+|+.|+.
T Consensus 6 ~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 6 ARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 488999999999999999999999975
No 188
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=91.79 E-value=8.7 Score=50.76 Aligned_cols=274 Identities=9% Similarity=0.023 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHHHHHH
Q 000322 1033 KKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLC 1112 (1670)
Q Consensus 1033 dAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~aLe 1112 (1670)
+.-+-.|..-+.||+-+-.+...|..+.-..+..+.....=+.+++..|-+-+||+-|+..+.....-. .-..+...++
T Consensus 96 ~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~-~~~~v~~~~e 174 (881)
T KOG0128|consen 96 NQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSE-ERKEVEELFE 174 (881)
T ss_pred hhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCc-chhHHHHHHH
Confidence 334444555566666666666666555556666666666666677777777788888877664333221 2233444444
Q ss_pred HhhhcCCCCcchhhhhhHHHHHHHHHHHH---HhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHH
Q 000322 1113 RCASASDGDEMHASACILDLFLQMLQCFC---MSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVC 1189 (1670)
Q Consensus 1113 ~las~~~~Dr~~~Sa~iLDILL~LvqLY~---qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~ 1189 (1670)
.+...+ -+ .+-| +|+..+++.+-. .++.|++......+.+. ..|. | ++ +--++.++.-.-|+.|||
T Consensus 175 kal~dy-~~---v~iw-~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~--s~g~--~-~t-~G~~~we~~~E~e~~~l~ 243 (881)
T KOG0128|consen 175 KALGDY-NS---VPIW-EEVVNYLVGFGNVAKKSEDYKKERSVFERALR--SLGS--H-IT-EGAAIWEMYREFEVTYLC 243 (881)
T ss_pred HHhccc-cc---chHH-HHHHHHHHhccccccccccchhhhHHHHHHHh--hhhh--h-hc-ccHHHHHHHHHHHHHHHH
Confidence 443333 11 1111 344444444433 33566666664444443 1110 0 00 011111222222333444
Q ss_pred HHHHHHhhccchHHHhhhhhhhhhhccCCC--------CcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhh
Q 000322 1190 CVYLVIYRKLPDAVLQLLECEKELFAIDWP--------PVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAH 1261 (1670)
Q Consensus 1190 ~iYllrYrvLPGn~y~q~e~~KEAf~I~W~--------y~~vlkdEPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~ 1261 (1670)
..- -+.+-.-+-..+.++-......|. +..+..-.+++++.-... +.++. .+..+
T Consensus 244 n~~---~~qv~a~~~~el~~~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~-~~~~~-------------e~~~q 306 (881)
T KOG0128|consen 244 NVE---QRQVIALFVRELKQPLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAK-ILFKF-------------ERLVQ 306 (881)
T ss_pred hHH---HHHHHHHHHHHHhccchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHH-HHHHH-------------HHHhh
Confidence 441 011111111111111111111111 122222233444333222 12222 23333
Q ss_pred HhHH--HHHHHHHH----hcCHHHHHHHHHHHHHhCCCchhHHH-HHHHHhhcc-cCCccHHHHHHHHHhCCCCCchHHH
Q 000322 1262 CFAV--NHIWCMAV----LNGLECSMNLLEKYIKLYPSCLELVL-MKARLQKHD-FGDLSSVGFEEALIKWPKGVPGIQC 1333 (1670)
Q Consensus 1262 ~fKL--N~IR~lI~----LEDse~A~~LfdklLk~~P~d~eL~L-~AAyL~~K~-m~~~A~svle~AL~~~PkNa~g~~c 1333 (1670)
.++. .-+..||. .++.....-.+.+++...+.+.++|+ +++|+.+.- .+..+..++-.++..+|--.-
T Consensus 307 ~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgd---- 382 (881)
T KOG0128|consen 307 KEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGD---- 382 (881)
T ss_pred hhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHH----
Confidence 3333 33566665 45888999999999999999999966 556653332 366777899999999988888
Q ss_pred HHHHHH
Q 000322 1334 IWNQYV 1339 (1670)
Q Consensus 1334 aW~QLI 1339 (1670)
.|.+++
T Consensus 383 L~~ral 388 (881)
T KOG0128|consen 383 LWKRAL 388 (881)
T ss_pred HHHHHH
Confidence 666666
No 189
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.71 E-value=48 Score=42.31 Aligned_cols=131 Identities=19% Similarity=0.205 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHhCC-CCchHHHHHHHHHhhCCCC
Q 000322 1012 EQCVEMALLILNQDANKLEGMKKALSLLSRALEAD---PTS----EILWITYLLIFYSNT-NSVGKDDMFSYSVKHNEGS 1083 (1670)
Q Consensus 1012 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEIN---PtS----aeaWy~yl~lY~~~~-~~eea~emlekAVelnP~N 1083 (1670)
..=|.++..++.... +.+-|.+-|.+|+-+- |+. -.++..++++|.+.. .-..+..+++|||++.-.+
T Consensus 47 rt~LqLg~lL~~yT~----N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~ 122 (629)
T KOG2300|consen 47 RTHLQLGALLLRYTK----NVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSV 122 (629)
T ss_pred HHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC
Confidence 344555544444433 3466666666665543 332 345667778887766 4555889999999998433
Q ss_pred -HH-------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHH--HHHHHHHHHHhc---CHHHHH
Q 000322 1084 -YA-------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDL--FLQMLQCFCMSG---NTEKAI 1150 (1670)
Q Consensus 1084 -Y~-------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDI--LL~LvqLY~qSG---nydKAI 1150 (1670)
|| |+.+.+-++ .|+.|+++|+--++.. | +.++--+-+ ++.+.++..+.. ++.+++
T Consensus 123 p~wsckllfQLaql~~idk--------D~~sA~elLavga~sA--d--~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll 190 (629)
T KOG2300|consen 123 PYWSCKLLFQLAQLHIIDK--------DFPSALELLAVGAESA--D--HICFPYLRMLFTLSMLMLLIMERDDYDVEKLL 190 (629)
T ss_pred chhhHHHHHHHHHHHhhhc--------cchhHHHHHhcccccc--c--hhhhHHHHHHHHHHHHHHHHhCccHHHHHHHH
Confidence 33 666677677 7899999984444333 1 223322222 234455555554 467777
Q ss_pred HHHHhhcc
Q 000322 1151 QRISRLLI 1158 (1670)
Q Consensus 1151 ~ti~rLEq 1158 (1670)
+++..|++
T Consensus 191 ~~~~qi~~ 198 (629)
T KOG2300|consen 191 QRCGQIWQ 198 (629)
T ss_pred HHHHHHHh
Confidence 77777776
No 190
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.42 E-value=0.2 Score=39.36 Aligned_cols=34 Identities=9% Similarity=0.035 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCC
Q 000322 1050 EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1083 (1670)
Q Consensus 1050 aeaWy~yl~lY~~~~~~eea~emlekAVelnP~N 1083 (1670)
+++|+.++.+|...+..+++.++|++|++++|+|
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 4689999999999999999999999999999854
No 191
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=91.30 E-value=0.51 Score=58.81 Aligned_cols=84 Identities=14% Similarity=0.192 Sum_probs=66.3
Q ss_pred cccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHhhCCCCHHH
Q 000322 1008 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNT-NSVGKDDMFSYSVKHNEGSYAL 1086 (1670)
Q Consensus 1008 ~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~-~~eea~emlekAVelnP~NY~L 1086 (1670)
+.|..+|+.++--.-..+ .+..--.+|..||..+|+++.+|..-+...+... +-+.+.++|.++++.+|++..|
T Consensus 102 ~~D~~lW~~yi~f~kk~~-----~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~L 176 (568)
T KOG2396|consen 102 NGDVKLWLSYIAFCKKKK-----TYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKL 176 (568)
T ss_pred CCCHHHHHHHHHHHHHhc-----chhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHH
Confidence 458899988765443332 1455557899999999999999999877666444 4667999999999999999999
Q ss_pred HHHHHhcCCC
Q 000322 1087 WLMYINSRTP 1096 (1670)
Q Consensus 1087 wlmYInsr~s 1096 (1670)
|--|.+.+-+
T Consensus 177 w~eyfrmEL~ 186 (568)
T KOG2396|consen 177 WKEYFRMELM 186 (568)
T ss_pred HHHHHHHHHH
Confidence 9999998833
No 192
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.21 E-value=0.4 Score=53.30 Aligned_cols=83 Identities=12% Similarity=0.084 Sum_probs=58.9
Q ss_pred hhhhccccHHHHHHHHHHHhcccc-----cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC-----------C
Q 000322 1003 KLKQVELSNEQCVEMALLILNQDA-----NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN-----------S 1066 (1670)
Q Consensus 1003 ~le~~~~d~qlWLelAl~~Lnq~~-----n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~-----------~ 1066 (1670)
.....|+|.+.+...+.-++.... .+..-+..|..-|+.||.|||+...+++-++..|+.++. -
T Consensus 17 ~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F 96 (186)
T PF06552_consen 17 AYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYF 96 (186)
T ss_dssp HHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHH
Confidence 566779999988887655544432 244679999999999999999999999999888875542 2
Q ss_pred chHHHHHHHHHhhCCCCHH
Q 000322 1067 VGKDDMFSYSVKHNEGSYA 1085 (1670)
Q Consensus 1067 eea~emlekAVelnP~NY~ 1085 (1670)
+.+.++|++||..+|.|..
T Consensus 97 ~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 97 EKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HH
T ss_pred HHHHHHHHHHHhcCCCcHH
Confidence 2367889999999998753
No 193
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.11 E-value=0.3 Score=38.59 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCC
Q 000322 1407 FGYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1439 (1670)
Q Consensus 1407 fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N 1439 (1670)
+-.+|.+++. .|++++|...|++||+.+|++
T Consensus 4 ~~~~g~~~~~--~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 4 YYNLGNAYFQ--LGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHH--TT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHH--hCCchHHHHHHHHHHHHCcCC
Confidence 3567888888 999999999999999999974
No 194
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=91.11 E-value=1.7 Score=45.28 Aligned_cols=80 Identities=19% Similarity=0.096 Sum_probs=61.9
Q ss_pred hhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCC---CHHHH----HHHHhcCCCcc
Q 000322 1029 LEGMKKALSLLSRALEADPTS---EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG---SYALW----LMYINSRTPLN 1098 (1670)
Q Consensus 1029 ~g~ydAALdLLsrALEINPtS---aeaWy~yl~lY~~~~~~eea~emlekAVelnP~---NY~Lw----lmYInsr~sld 1098 (1670)
.|+.+.|..+|.++|+..+.. ..+++.++..|...|..+++..+|+++++-.|+ +-.++ +...+.+
T Consensus 14 ~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g---- 89 (120)
T PF12688_consen 14 LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG---- 89 (120)
T ss_pred cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC----
Confidence 356699999999999986665 679999999999999999999999999998888 44443 4444445
Q ss_pred cchhhHHHHHHHHHHhhh
Q 000322 1099 HRLDAYDAALSVLCRCAS 1116 (1670)
Q Consensus 1099 drl~~YdkAI~aLe~las 1116 (1670)
.+++|++.+.....
T Consensus 90 ----r~~eAl~~~l~~la 103 (120)
T PF12688_consen 90 ----RPKEALEWLLEALA 103 (120)
T ss_pred ----CHHHHHHHHHHHHH
Confidence 56777777755443
No 195
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.94 E-value=0.38 Score=37.87 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCC
Q 000322 1407 FGYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1439 (1670)
Q Consensus 1407 fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N 1439 (1670)
+-.+|.++.+ .|++++|...|++|++++|+|
T Consensus 4 ~~~lg~~y~~--~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 4 YYNLGKIYEQ--LGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHH--TTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHH--cCCHHHHHHHHHHHHhhCCCC
Confidence 3678999999 999999999999999999954
No 196
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.89 E-value=0.22 Score=40.82 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=30.9
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHH
Q 000322 1317 FEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAE 1353 (1670)
Q Consensus 1317 le~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~ 1353 (1670)
|++||+++|+|+. +|+.|.......|++++|++
T Consensus 2 y~kAie~~P~n~~----a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAE----AYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHH----HHHHHHHHHHHCcCHHhhcC
Confidence 7899999999999 99999999999999999863
No 197
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.31 E-value=11 Score=44.49 Aligned_cols=112 Identities=13% Similarity=0.113 Sum_probs=84.7
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-----HHHHHHhcCCCcccchhhH
Q 000322 1030 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-----LWLMYINSRTPLNHRLDAY 1104 (1670)
Q Consensus 1030 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-----LwlmYInsr~slddrl~~Y 1104 (1670)
++.+-|-..+.+...-.|+|.-+--..+.++-..+...++.++|+.-++=+|-|.. ++..-...+ +
T Consensus 66 ~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK-----~---- 136 (289)
T KOG3060|consen 66 GRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGK-----N---- 136 (289)
T ss_pred cchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCC-----c----
Confidence 44566777777777777888888888888888888888888888888888888777 443333333 1
Q ss_pred HHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000322 1105 DAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1105 dkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1158 (1670)
-.||+.+-+....|..| .|.|..+.++|..-|.|+||+--+..+.-
T Consensus 137 l~aIk~ln~YL~~F~~D--------~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 137 LEAIKELNEYLDKFMND--------QEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 26777777777788666 78999999999999999999887766664
No 198
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=90.28 E-value=37 Score=45.69 Aligned_cols=106 Identities=15% Similarity=0.174 Sum_probs=84.5
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-----HHHHHHhcCCCcccchh
Q 000322 1028 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-----LWLMYINSRTPLNHRLD 1102 (1670)
Q Consensus 1028 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-----LwlmYInsr~slddrl~ 1102 (1670)
+++++.+|+..+...|.-.|++.-+-..=+....+.+...++...+ .|++.-+.+.. |=..|-.++
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~L-e~~~~~~~~D~~tLq~l~~~y~d~~-------- 91 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLL-EALYGLKGTDDLTLQFLQNVYRDLG-------- 91 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHH-hhhccCCCCchHHHHHHHHHHHHHh--------
Confidence 5678899999999999999998877665555555778777787554 45555555544 566788888
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHH
Q 000322 1103 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQ 1151 (1670)
Q Consensus 1103 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ 1151 (1670)
.+++|..+|++....+ |. ++.++.++-.|.+-++|.++-+
T Consensus 92 ~~d~~~~~Ye~~~~~~-P~--------eell~~lFmayvR~~~yk~qQk 131 (932)
T KOG2053|consen 92 KLDEAVHLYERANQKY-PS--------EELLYHLFMAYVREKSYKKQQK 131 (932)
T ss_pred hhhHHHHHHHHHHhhC-Cc--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999998 56 7899999999999999987644
No 199
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=90.23 E-value=0.24 Score=58.74 Aligned_cols=65 Identities=18% Similarity=0.154 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHHhCCCchhHHHH-HHH-HhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHH
Q 000322 1276 GLECSMNLLEKYIKLYPSCLELVLM-KAR-LQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQ 1344 (1670)
Q Consensus 1276 Dse~A~~LfdklLk~~P~d~eL~L~-AAy-L~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~ 1344 (1670)
-....-+.|..+++.||.+++||++ +++ +......+.+++.|..+|..+|+++. +|..|.++++.
T Consensus 122 ~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~----iw~eyfr~El~ 188 (435)
T COG5191 122 MYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPR----IWIEYFRMELM 188 (435)
T ss_pred HHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCch----HHHHHHHHHHH
Confidence 4456677999999999999999877 555 45555577888999999999999999 99999888773
No 200
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.87 E-value=6.7 Score=46.42 Aligned_cols=218 Identities=16% Similarity=0.092 Sum_probs=124.7
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHH---hhc
Q 000322 1103 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILT---CLT 1179 (1670)
Q Consensus 1103 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~---YLt 1179 (1670)
+|-.+|..-+.-.... .+ .+...+|..-|...|.|.-.|+.| ..|..+ -+..|+. |+.
T Consensus 23 nyq~~ine~~~~~~~~-~~--------~e~d~y~~raylAlg~~~~~~~eI-------~~~~~~---~lqAvr~~a~~~~ 83 (299)
T KOG3081|consen 23 NYQQCINEAEKFSSSK-TD--------VELDVYMYRAYLALGQYQIVISEI-------KEGKAT---PLQAVRLLAEYLE 83 (299)
T ss_pred HHHHHHHHHHhhcccc-ch--------hHHHHHHHHHHHHccccccccccc-------ccccCC---hHHHHHHHHHHhh
Confidence 6677777654443332 22 566677777888999999887744 222332 2344443 333
Q ss_pred cCCc---chh----hHHHHH---HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCc
Q 000322 1180 ISDK---LIF----WVCCVY---LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGE 1249 (1670)
Q Consensus 1180 ~sDR---~~A----WL~~iY---llrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~nde 1249 (1670)
...+ .++ |++..+ ....+.+-+-+|+..+-..+|+.. .-.....|---.-+.+...+.-...+.+
T Consensus 84 ~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~---~~~~~~lE~~Al~VqI~lk~~r~d~A~~-- 158 (299)
T KOG3081|consen 84 LESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKA---LHLGENLEAAALNVQILLKMHRFDLAEK-- 158 (299)
T ss_pred CcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHH---HhccchHHHHHHHHHHHHHHHHHHHHHH--
Confidence 2222 222 777777 667888889999999999999887 4444333322211111111111111011
Q ss_pred chhhhh---hhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHHhC
Q 000322 1250 SLEKET---NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKW 1324 (1670)
Q Consensus 1250 sla~~~---~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~~~ 1324 (1670)
.+..-+ ..-+...++-.++...-.-+..+.|-=.|..+=+.+|..+.+ -++...|.+.+ .++|..+++.||...
T Consensus 159 ~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~-~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 159 ELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGR-YEEAESLLEEALDKD 237 (299)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcC-HHHHHHHHHHHHhcc
Confidence 111111 233333344444444333335666666777777766666666 66677777776 889999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHcCChH
Q 000322 1325 PKGVPGIQCIWNQYVEYALQNGRHD 1349 (1670)
Q Consensus 1325 PkNa~g~~caW~QLIq~al~~en~d 1349 (1670)
|+.+. .-.-+|-.+...|.-+
T Consensus 238 ~~dpe----tL~Nliv~a~~~Gkd~ 258 (299)
T KOG3081|consen 238 AKDPE----TLANLIVLALHLGKDA 258 (299)
T ss_pred CCCHH----HHHHHHHHHHHhCCCh
Confidence 99988 4444455555555443
No 201
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.87 E-value=2.1 Score=50.15 Aligned_cols=93 Identities=18% Similarity=0.208 Sum_probs=74.9
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHhhCCCC-------HHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchh
Q 000322 1053 WITYLLIFYSNTNSVGKDDMFSYSVKHNEGS-------YALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHA 1125 (1670)
Q Consensus 1053 Wy~yl~lY~~~~~~eea~emlekAVelnP~N-------Y~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~ 1125 (1670)
.|..+.=++..+.-.++.+-|..=|+.-|++ |||+..|..++ .|++|..+|..+++.+ |+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg--------~y~~Aa~~f~~~~k~~-P~---- 210 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQG--------DYEDAAYIFARVVKDY-PK---- 210 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcc--------cchHHHHHHHHHHHhC-CC----
Confidence 4544444445555566777777777777764 78999999999 9999999999999998 44
Q ss_pred hhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000322 1126 SACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1126 Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1158 (1670)
|...-|.+|.+..+....|+.++|..||..+..
T Consensus 211 s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 211 SPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 456789999999999999999999999988775
No 202
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=89.82 E-value=20 Score=47.74 Aligned_cols=214 Identities=14% Similarity=0.118 Sum_probs=112.1
Q ss_pred cccHHH-HHHHHHHHhcccc-cc-hhhHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHhCCCCchHHHHHHHHHh-
Q 000322 1008 ELSNEQ-CVEMALLILNQDA-NK-LEGMKKALSLLSRALEADPTS-----EILWITYLLIFYSNTNSVGKDDMFSYSVK- 1078 (1670)
Q Consensus 1008 ~~d~ql-WLelAl~~Lnq~~-n~-~g~ydAALdLLsrALEINPtS-----aeaWy~yl~lY~~~~~~eea~emlekAVe- 1078 (1670)
++-.|+ .|+.|+.++.+.. .+ ..++-++...++-|+|+--+- -..||.|+.+.-.++.-+.++++||||=-
T Consensus 808 vLAieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~h 887 (1416)
T KOG3617|consen 808 VLAIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVH 887 (1416)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCCh
Confidence 444443 5778877776653 11 334445555566666654332 34688888888888888889999998732
Q ss_pred ---------hCCCCH-------------HHHHHHHhcCCCcccchhhHHHHHHHHHHh-hhcCCCCcchhhhhh------
Q 000322 1079 ---------HNEGSY-------------ALWLMYINSRTPLNHRLDAYDAALSVLCRC-ASASDGDEMHASACI------ 1129 (1670)
Q Consensus 1079 ---------lnP~NY-------------~LwlmYInsr~slddrl~~YdkAI~aLe~l-as~~~~Dr~~~Sa~i------ 1129 (1670)
-+|... .-|--||.+..-.+..+..|..|...|+.. ...+ ..+.+-.|+|
T Consensus 888 afev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~-qGk~~kAa~iA~esgd 966 (1416)
T KOG3617|consen 888 AFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCI-QGKTDKAARIAEESGD 966 (1416)
T ss_pred HHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEee-ccCchHHHHHHHhccc
Confidence 223222 267789999877777777777777766431 0011 0011111111
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhhc--ccccCCCCcccchHHHHHHhhccCCcchhhHHHHH-HHH-hhccchHHHh
Q 000322 1130 LDLFLQMLQCFCMSGNTEKAIQRISRLL--IPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY-LVI-YRKLPDAVLQ 1205 (1670)
Q Consensus 1130 LDILL~LvqLY~qSGnydKAI~ti~rLE--q~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iY-llr-YrvLPGn~y~ 1205 (1670)
.-.-+.+...|--.|++.+|+.-+-|-. .+|+-=+.|+++-=.-+-++|+.+.+.++-.+.-| +.- |-.--.-+|.
T Consensus 967 ~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYH 1046 (1416)
T KOG3617|consen 967 KAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYH 1046 (1416)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHH
Confidence 1233566777777788888877322211 11111111111111122344555555444433333 111 2111234577
Q ss_pred hhhhhhhhhccCCCCcc
Q 000322 1206 LLECEKELFAIDWPPVQ 1222 (1670)
Q Consensus 1206 q~e~~KEAf~I~W~y~~ 1222 (1670)
..|.--+|+.+...+++
T Consensus 1047 kAGm~~kALelAF~tqQ 1063 (1416)
T KOG3617|consen 1047 KAGMIGKALELAFRTQQ 1063 (1416)
T ss_pred hhcchHHHHHHHHhhcc
Confidence 77877777777444443
No 203
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=89.51 E-value=6.2 Score=38.21 Aligned_cols=117 Identities=17% Similarity=0.189 Sum_probs=89.8
Q ss_pred hhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHH-HHHhcCCCcccch
Q 000322 1029 LEGMKKALSLLSRALE--ADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWL-MYINSRTPLNHRL 1101 (1670)
Q Consensus 1029 ~g~ydAALdLLsrALE--INPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----Lwl-mYInsr~slddrl 1101 (1670)
.+.+..++..+..++. ..+....+|+.++.++...+.-..+.+.+..++...+.+.. ... .|...+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 144 (291)
T COG0457 72 LGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELG------- 144 (291)
T ss_pred cccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcC-------
Confidence 3556889999999998 89999999999999999998888899999999998877633 222 566666
Q ss_pred hhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000322 1102 DAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1102 ~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1158 (1670)
.++.|+..|.+..... +. .......++.+...+...++++.|+..+.+...
T Consensus 145 -~~~~a~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 145 -DYEEALELYEKALELD-PE----LNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred -CHHHHHHHHHHHHhcC-CC----ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 8899999998886633 31 011255666666668889999999997777764
No 204
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.27 E-value=1.8 Score=52.94 Aligned_cols=88 Identities=16% Similarity=0.130 Sum_probs=71.7
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhH-H
Q 000322 1027 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAY-D 1105 (1670)
Q Consensus 1027 n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~Y-d 1105 (1670)
.+...|++|+..=.++|+++|+++-++|.-+..+...++-+.|...|++|+++.|.|-..-.-++... .++..| +
T Consensus 268 lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~----~k~~~~~~ 343 (397)
T KOG0543|consen 268 LKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLK----QKIREYEE 343 (397)
T ss_pred HhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH----HHHHHHHH
Confidence 45667899999999999999999999999999999999999999999999999999988544444433 122233 5
Q ss_pred HHHHHHHHhhhcC
Q 000322 1106 AALSVLCRCASAS 1118 (1670)
Q Consensus 1106 kAI~aLe~las~~ 1118 (1670)
+...+|-+|.+..
T Consensus 344 kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 344 KEKKMYANMFAKL 356 (397)
T ss_pred HHHHHHHHHhhcc
Confidence 5588888887765
No 205
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=88.63 E-value=0.51 Score=55.99 Aligned_cols=58 Identities=21% Similarity=0.240 Sum_probs=51.4
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH
Q 000322 1028 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1085 (1670)
Q Consensus 1028 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~ 1085 (1670)
.-|+.++|--+|.|||...|+.+.++.++..+---..+-.+++.+|-+|+.++|.|..
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence 3477899999999999999999999999988865555566799999999999999987
No 206
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.39 E-value=3.9 Score=46.74 Aligned_cols=113 Identities=14% Similarity=0.101 Sum_probs=78.8
Q ss_pred hhhhhhccccH--HHHHHHHHHHhcccc--cchhhHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHhCCCCchHHH
Q 000322 1001 LNKLKQVELSN--EQCVEMALLILNQDA--NKLEGMKKALSLLSRALEADPTSEI-----LWITYLLIFYSNTNSVGKDD 1071 (1670)
Q Consensus 1001 i~~le~~~~d~--qlWLelAl~~Lnq~~--n~~g~ydAALdLLsrALEINPtSae-----aWy~yl~lY~~~~~~eea~e 1071 (1670)
+.-+|.-+.|. +.-++.|-.+=..+. ++-|.|..|..-|+.||++=|..+. +|..-+..+.+++..+.+.+
T Consensus 76 mae~E~i~~deek~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~ 155 (271)
T KOG4234|consen 76 MAEIEKIFSDEEKDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIE 155 (271)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHH
Confidence 44555555553 444666654444332 5669999999999999999998654 44444556667777888999
Q ss_pred HHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCc
Q 000322 1072 MFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDE 1122 (1670)
Q Consensus 1072 mlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr 1122 (1670)
-|.+|++++|.+.. -+-.|-+.. .|+.|++=|-...... |.+
T Consensus 156 dcsKaiel~pty~kAl~RRAeayek~e--------k~eealeDyKki~E~d-Ps~ 201 (271)
T KOG4234|consen 156 DCSKAIELNPTYEKALERRAEAYEKME--------KYEEALEDYKKILESD-PSR 201 (271)
T ss_pred HHHhhHhcCchhHHHHHHHHHHHHhhh--------hHHHHHHHHHHHHHhC-cch
Confidence 99999999984443 345666655 7888888887777766 443
No 207
>PRK15331 chaperone protein SicA; Provisional
Probab=88.23 E-value=1.4 Score=48.36 Aligned_cols=93 Identities=10% Similarity=-0.037 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HH
Q 000322 1012 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LW 1087 (1670)
Q Consensus 1012 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----Lw 1087 (1670)
+.--..|+...++ |+|+.|..+|....-.||.++.-|.-|+..+-.+++-+++.++|..|.-++++++. .+
T Consensus 38 e~iY~~Ay~~y~~-----Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 38 DGLYAHAYEFYNQ-----GRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred HHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 4455556666665 67899999999999999999999999999999999999999999999999988877 88
Q ss_pred HHHHhcCCCcccchhhHHHHHHHHHHhhhc
Q 000322 1088 LMYINSRTPLNHRLDAYDAALSVLCRCASA 1117 (1670)
Q Consensus 1088 lmYInsr~slddrl~~YdkAI~aLe~las~ 1117 (1670)
.-|+..+ .-+.|+..|+.....
T Consensus 113 qC~l~l~--------~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 113 QCQLLMR--------KAAKARQCFELVNER 134 (165)
T ss_pred HHHHHhC--------CHHHHHHHHHHHHhC
Confidence 9999999 779999999766553
No 208
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.22 E-value=23 Score=41.67 Aligned_cols=119 Identities=14% Similarity=0.071 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhh
Q 000322 1229 QRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAV-LNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQK 1306 (1670)
Q Consensus 1229 dnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~-LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~ 1306 (1670)
..+.+.++.|.+||.. +++.+.. .++ .+| ..+|.+ +|.-.+|+..|.++-..--.+--| |=+-.|+.+
T Consensus 131 ekaI~~YE~Aae~yk~---ees~ssA--NKC--~lK---vA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyflk 200 (288)
T KOG1586|consen 131 EKAIAHYEQAAEYYKG---EESVSSA--NKC--LLK---VAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLK 200 (288)
T ss_pred HHHHHHHHHHHHHHcc---hhhhhhH--HHH--HHH---HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHH
Confidence 6788999999999974 4443332 111 122 334544 888899999999999988888777 555555544
Q ss_pred ccc-------CCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000322 1307 HDF-------GDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1357 (1670)
Q Consensus 1307 K~m-------~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ 1357 (1670)
.+| +..+...+++-.+++|.=...-.|.+.-=+..++..+|.+.--+.+..
T Consensus 201 AgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d~e~fte~vke 258 (288)
T KOG1586|consen 201 AGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQDIEKFTEVVKE 258 (288)
T ss_pred HHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 442 234457889999999999888999998888899999998887777766
No 209
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=88.07 E-value=0.83 Score=34.78 Aligned_cols=30 Identities=33% Similarity=0.522 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000322 1031 GMKKALSLLSRALEADPTSEILWITYLLIF 1060 (1670)
Q Consensus 1031 ~ydAALdLLsrALEINPtSaeaWy~yl~lY 1060 (1670)
..+.|..+|.++++..|.++.+|..|+.+.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 467888899999999999999999988773
No 210
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=87.90 E-value=2.2 Score=45.99 Aligned_cols=81 Identities=16% Similarity=0.063 Sum_probs=66.9
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH--------HHHHHHhcCCCcccc
Q 000322 1029 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--------LWLMYINSRTPLNHR 1100 (1670)
Q Consensus 1029 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~--------LwlmYInsr~slddr 1100 (1670)
.|.++.|+..|.++|.+-|..+.+|-.-++.|.-.+.++++++-+.+|++++-+--. -+++|--.+
T Consensus 56 ~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g------ 129 (175)
T KOG4555|consen 56 AGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG------ 129 (175)
T ss_pred ccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC------
Confidence 478999999999999999999999999999999999999999999999999854432 455665555
Q ss_pred hhhHHHHHHHHHHhhhc
Q 000322 1101 LDAYDAALSVLCRCASA 1117 (1670)
Q Consensus 1101 l~~YdkAI~aLe~las~ 1117 (1670)
.-++|+.=|+.++.-
T Consensus 130 --~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 130 --NDDAARADFEAAAQL 144 (175)
T ss_pred --chHHHHHhHHHHHHh
Confidence 337888888766553
No 211
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.88 E-value=2.5 Score=47.86 Aligned_cols=107 Identities=17% Similarity=0.054 Sum_probs=66.9
Q ss_pred ccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH--------HHHhh-----hhccc---ccccchhh
Q 000322 1312 LSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR--------WFHSV-----WKVQY---SQVEISDP 1375 (1670)
Q Consensus 1312 ~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~--------ff~gi-----a~~Q~---~~deALDa 1375 (1670)
+.....++....+|++.= .+-+=++++.-+++.+++++|+..++. -|..+ +.+|. ..++|+.+
T Consensus 70 ~~~~~~ekf~~~n~~t~Y-a~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~ 148 (207)
T COG2976 70 KSIAAAEKFVQANGKTIY-AVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKT 148 (207)
T ss_pred hhHHHHHHHHhhccccHH-HHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 344444555554444443 333336667777777777777777664 23332 33332 77788887
Q ss_pred hcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCC
Q 000322 1376 LVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1439 (1670)
Q Consensus 1376 Lrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N 1439 (1670)
|.....+ .+++ .++-+-||+|-. +|+.+||+.+|++||...+++
T Consensus 149 L~t~~~~-------~w~~-----------~~~elrGDill~--kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 149 LDTIKEE-------SWAA-----------IVAELRGDILLA--KGDKQEARAAYEKALESDASP 192 (207)
T ss_pred Hhccccc-------cHHH-----------HHHHHhhhHHHH--cCchHHHHHHHHHHHHccCCh
Confidence 7732222 1111 234688999999 999999999999999986654
No 212
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=87.21 E-value=0.63 Score=55.35 Aligned_cols=82 Identities=16% Similarity=0.286 Sum_probs=65.9
Q ss_pred cccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHhCCCCchHHHHHHHHHhhCCCCHHH
Q 000322 1008 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITY-LLIFYSNTNSVGKDDMFSYSVKHNEGSYAL 1086 (1670)
Q Consensus 1008 ~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~y-l~lY~~~~~~eea~emlekAVelnP~NY~L 1086 (1670)
+.|.-.|..+|-=...- +-|...-+++..||..+|+++++|... ..-|.-.++-+....||.+++.+||++-.+
T Consensus 104 f~D~k~w~~y~~Y~~k~-----k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~i 178 (435)
T COG5191 104 FNDPKIWSQYAAYVIKK-----KMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRI 178 (435)
T ss_pred CCCcHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchH
Confidence 46778898877433333 346777889999999999999999884 444556677777999999999999999999
Q ss_pred HHHHHhcC
Q 000322 1087 WLMYINSR 1094 (1670)
Q Consensus 1087 wlmYInsr 1094 (1670)
|.-|.+.+
T Consensus 179 w~eyfr~E 186 (435)
T COG5191 179 WIEYFRME 186 (435)
T ss_pred HHHHHHHH
Confidence 99888877
No 213
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=86.86 E-value=73 Score=37.77 Aligned_cols=186 Identities=12% Similarity=0.068 Sum_probs=107.7
Q ss_pred HHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcc
Q 000322 1088 LMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRH 1167 (1670)
Q Consensus 1088 lmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~ 1167 (1670)
+-=++.+ .|++|+..|+.+-+++|-+ .+...+.+.+++-+-..|+|+.|+..++|... +-+.++
T Consensus 42 ~~~L~~g--------n~~~A~~~fe~l~~~~p~s-----~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~--lyP~~~- 105 (254)
T COG4105 42 LTELQKG--------NYEEAIKYFEALDSRHPFS-----PYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR--LYPTHP- 105 (254)
T ss_pred HHHHhcC--------CHHHHHHHHHHHHHcCCCC-----cccHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCCCC-
Confidence 4456677 8999999999999988433 46689999999999999999999999999886 443333
Q ss_pred cchHHHHHHhhccCCcchhhHHHHH-HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhc
Q 000322 1168 SLFLSDILTCLTISDKLIFWVCCVY-LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYS 1246 (1670)
Q Consensus 1168 ~lSLsKi~~YLt~sDR~~AWL~~iY-llrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ 1246 (1670)
.+.++-++= +..|..+ +|+ .-||.-+..=+...-+....|-
T Consensus 106 ----------------n~dY~~YlkgLs~~~~i-----------------~~~-----~rDq~~~~~A~~~f~~~i~ryP 147 (254)
T COG4105 106 ----------------NADYAYYLKGLSYFFQI-----------------DDV-----TRDQSAARAAFAAFKELVQRYP 147 (254)
T ss_pred ----------------ChhHHHHHHHHHHhccC-----------------Ccc-----ccCHHHHHHHHHHHHHHHHHCC
Confidence 223333332 2222221 111 1122222111111112222222
Q ss_pred CCcchhhhh-----hhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH-----HHHHHHHhhcccCCccHHH
Q 000322 1247 NGESLEKET-----NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-----VLMKARLQKHDFGDLSSVG 1316 (1670)
Q Consensus 1247 ndesla~~~-----~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL-----~L~AAyL~~K~m~~~A~sv 1316 (1670)
|.+=..... =......-=+...+.|..-+-...|++=|+.+++.+|+-... +|.-+|+.++ +.+.|-.
T Consensus 148 nS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lg-l~~~a~~- 225 (254)
T COG4105 148 NSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALG-LTDEAKK- 225 (254)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhC-ChHHHHH-
Confidence 211110000 000001111122334344668999999999999999998776 6666675543 3555544
Q ss_pred HHHHHHhCCCCCc
Q 000322 1317 FEEALIKWPKGVP 1329 (1670)
Q Consensus 1317 le~AL~~~PkNa~ 1329 (1670)
...+|..++-+.+
T Consensus 226 ~~~vl~~N~p~s~ 238 (254)
T COG4105 226 TAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHhcCCCCc
Confidence 4778888877776
No 214
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.84 E-value=36 Score=40.70 Aligned_cols=57 Identities=16% Similarity=0.131 Sum_probs=43.7
Q ss_pred HHhcCHHHHHHHHHHHHHhCCCchhH---HHHHHHHhhcccCCccHHHHHHHHHhCCCCCc
Q 000322 1272 AVLNGLECSMNLLEKYIKLYPSCLEL---VLMKARLQKHDFGDLSSVGFEEALIKWPKGVP 1329 (1670)
Q Consensus 1272 I~LEDse~A~~LfdklLk~~P~d~eL---~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~ 1329 (1670)
+.+++.++|..++..+|..++.+.+. .+.++.+.-|. ++..-.-+.+.....|+.+-
T Consensus 218 l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd-~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 218 LQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD-AEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHhcCCcchH
Confidence 44789999999999999999999998 66677665554 33233666778888887765
No 215
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=86.68 E-value=0.57 Score=43.08 Aligned_cols=63 Identities=11% Similarity=0.103 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcccccchhhHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhC
Q 000322 1013 QCVEMALLILNQDANKLEGMKKALSLLSRALEAD-------PTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHN 1080 (1670)
Q Consensus 1013 lWLelAl~~Lnq~~n~~g~ydAALdLLsrALEIN-------PtSaeaWy~yl~lY~~~~~~eea~emlekAVeln 1080 (1670)
.+..+|.-+... |+|+.|+..|.+||++- |.-+.+|+.++.+|..+++..++.++|++|++..
T Consensus 7 ~~~~la~~~~~~-----~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 7 AYNNLARVYREL-----GRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHT-----T-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 344445444443 66799999999999762 2346788889999999999999999999998753
No 216
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=86.28 E-value=6.2 Score=42.69 Aligned_cols=51 Identities=18% Similarity=0.209 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000322 1103 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1103 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1158 (1670)
.|++|++.|+.+-+++|-. ......-|.++..|-.+|+|+.|+.+++|+..
T Consensus 25 ~Y~~A~~~le~L~~ryP~g-----~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 25 NYEEAIKQLEALDTRYPFG-----EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred CHHHHHHHHHHHHhcCCCC-----cccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8999999999999998543 35578889999999999999999999999886
No 217
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=85.65 E-value=2.7 Score=43.15 Aligned_cols=49 Identities=20% Similarity=0.218 Sum_probs=40.9
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 000322 1029 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSV 1077 (1670)
Q Consensus 1029 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAV 1077 (1670)
.|+++.|..++.+++++||.+..+|..++..|...|...++.+.|++..
T Consensus 75 ~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 75 AGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3668999999999999999999999999999999999888888887764
No 218
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.17 E-value=57 Score=37.75 Aligned_cols=156 Identities=14% Similarity=0.035 Sum_probs=95.0
Q ss_pred hCCCchhHHHHHHHHhhccc-CCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-hhhhccc
Q 000322 1290 LYPSCLELVLMKARLQKHDF-GDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFH-SVWKVQY 1367 (1670)
Q Consensus 1290 ~~P~d~eL~L~AAyL~~K~m-~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~-gia~~Q~ 1367 (1670)
.....++.||..+.+..+.+ ..-|...+.++....+........+...++++.|..|+...|+.+++.... .+.....
T Consensus 141 ~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~ 220 (352)
T PF02259_consen 141 LPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNID 220 (352)
T ss_pred chhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccc
Confidence 35555566888888766654 667888888888877544332233677889999999999999999988766 3333221
Q ss_pred -ccccchh-hhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHh----hhcCHHHHHHHHHHHHhhccCCcH
Q 000322 1368 -SQVEISD-PLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRL----LQNDWNEARLAIDAALKAAASEHF 1441 (1670)
Q Consensus 1368 -~~deALD-aLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~----Lqg~~~EAfaAYDKALkanp~N~~ 1441 (1670)
.....+. .+-.....+.... ...+ ...+.--+|-.+|.-.... -.+..+++...|.+|++..|..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-- 291 (352)
T PF02259_consen 221 SISNAELKSGLLESLEVISSTN----LDKE---SKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW-- 291 (352)
T ss_pred cccHHHHhhccccccccccccc----hhhh---hHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH--
Confidence 1110000 0000000000000 0000 0112223346666655553 4589999999999999999988
Q ss_pred HHHHHHHHHHHhc
Q 000322 1442 KHCVREHAMLLLI 1454 (1670)
Q Consensus 1442 i~cLNNYAYFLS~ 1454 (1670)
..+|..+|.|...
T Consensus 292 ~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 292 EKAWHSWALFNDK 304 (352)
T ss_pred HHHHHHHHHHHHH
Confidence 7799998888663
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=84.94 E-value=1.8 Score=39.74 Aligned_cols=62 Identities=11% Similarity=0.088 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhh---CCCCH-H-------HHHHHHhcCCCcccchhhHHHHHHHHHHhh
Q 000322 1047 PTSEILWITYLLIFYSNTNSVGKDDMFSYSVKH---NEGSY-A-------LWLMYINSRTPLNHRLDAYDAALSVLCRCA 1115 (1670)
Q Consensus 1047 PtSaeaWy~yl~lY~~~~~~eea~emlekAVel---nP~NY-~-------LwlmYInsr~slddrl~~YdkAI~aLe~la 1115 (1670)
|+-+.+|..++.+|...+.-.++.++|++|+++ -+++. . ++..|...+ .|++|++.|++..
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g--------~~~~A~~~~~~al 73 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLG--------DYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHH
Confidence 455788999999999999999999999999955 22222 2 666677777 8899999887764
Q ss_pred h
Q 000322 1116 S 1116 (1670)
Q Consensus 1116 s 1116 (1670)
+
T Consensus 74 ~ 74 (78)
T PF13424_consen 74 D 74 (78)
T ss_dssp H
T ss_pred h
Confidence 3
No 220
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=84.80 E-value=8.2 Score=48.28 Aligned_cols=113 Identities=15% Similarity=0.105 Sum_probs=86.6
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----------HHHHHHhcCCCcc
Q 000322 1029 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----------LWLMYINSRTPLN 1098 (1670)
Q Consensus 1029 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----------LwlmYInsr~sld 1098 (1670)
....+.|-.+|...++..|+++-..++-++++...++.+++.+.|++|+... +.+ ++|.|+-..
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q--~~~~Ql~~l~~~El~w~~~~~~---- 319 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQ--SEWKQLHHLCYFELAWCHMFQH---- 319 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccch--hhHHhHHHHHHHHHHHHHHHHc----
Confidence 4567899999999999999999999999999999999999999999998433 222 778888888
Q ss_pred cchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCH-------HHHHHHHHhhcc
Q 000322 1099 HRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNT-------EKAIQRISRLLI 1158 (1670)
Q Consensus 1099 drl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGny-------dKAI~ti~rLEq 1158 (1670)
.|++|...+.++...+.-.+ ++ .-++..=+|.+.|+. ++|...+.++-.
T Consensus 320 ----~w~~A~~~f~~L~~~s~WSk-----a~--Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 320 ----DWEEAAEYFLRLLKESKWSK-----AF--YAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred ----hHHHHHHHHHHHHhccccHH-----HH--HHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 89999999999977552222 11 234445577778887 777775544443
No 221
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=84.44 E-value=8.1 Score=39.73 Aligned_cols=98 Identities=15% Similarity=0.215 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhH
Q 000322 1031 GMKKALSLLSRALEADPTSE------ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAY 1104 (1670)
Q Consensus 1031 ~ydAALdLLsrALEINPtSa------eaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~Y 1104 (1670)
.-..+...|.+++.+..... .-|..-..- ....++..|++ .+...|+..+ .|
T Consensus 21 ~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~--------~l~~~~~~~~~------~l~~~~~~~~--------~~ 78 (146)
T PF03704_consen 21 DPEEAIELLEEALALYRGDFLPDLDDEEWVEPERE--------RLRELYLDALE------RLAEALLEAG--------DY 78 (146)
T ss_dssp -HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHH--------HHHHHHHHHHH------HHHHHHHHTT---------H
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHH--------HHHHHHHHHHH------HHHHHHHhcc--------CH
Confidence 34788888888888875421 234442222 12233333322 2556777888 89
Q ss_pred HHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000322 1105 DAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1105 dkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1158 (1670)
++|+..+.++.... |-. ++++..+|.+|...|++..|+..+.++..
T Consensus 79 ~~a~~~~~~~l~~d-P~~-------E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 79 EEALRLLQRALALD-PYD-------EEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHS-TT--------HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCC-------HHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999998 454 89999999999999999999998888764
No 222
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=82.26 E-value=2.9 Score=52.20 Aligned_cols=91 Identities=18% Similarity=0.164 Sum_probs=71.6
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHH
Q 000322 1027 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDA 1106 (1670)
Q Consensus 1027 n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~Ydk 1106 (1670)
.+...|+.|.++|+.||+++|+.++.|-.-+..+.+.+.--+++.-+.+|++++|...- -|...+ +...++..|-+
T Consensus 15 l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K---~Y~rrg-~a~m~l~~~~~ 90 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIK---AYVRRG-TAVMALGEFKK 90 (476)
T ss_pred cccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhh---eeeecc-HHHHhHHHHHH
Confidence 45677999999999999999999999999988888888888899999999999974332 222221 22333448899
Q ss_pred HHHHHHHhhhcCCCCc
Q 000322 1107 ALSVLCRCASASDGDE 1122 (1670)
Q Consensus 1107 AI~aLe~las~~~~Dr 1122 (1670)
|+..|+..++.. |++
T Consensus 91 A~~~l~~~~~l~-Pnd 105 (476)
T KOG0376|consen 91 ALLDLEKVKKLA-PND 105 (476)
T ss_pred HHHHHHHhhhcC-cCc
Confidence 999999888887 554
No 223
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=81.87 E-value=1.7e+02 Score=37.93 Aligned_cols=99 Identities=14% Similarity=0.103 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHH-hCCCCchHHHHHHHHHhhCCCC-HH---------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhc
Q 000322 1049 SEILWITYLLIFY-SNTNSVGKDDMFSYSVKHNEGS-YA---------LWLMYINSRTPLNHRLDAYDAALSVLCRCASA 1117 (1670)
Q Consensus 1049 SaeaWy~yl~lY~-~~~~~eea~emlekAVelnP~N-Y~---------LwlmYInsr~slddrl~~YdkAI~aLe~las~ 1117 (1670)
.+.+.+.|+.++. ...+..+|..+++||+.++..+ +. |..+|-+.+-+. |+..+.++.+.
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~---------a~~~l~~~I~~ 128 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA---------ALKNLDKAIED 128 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH---------HHHHHHHHHHH
Confidence 4567888888887 5556777999999999888532 22 566666666222 44444444433
Q ss_pred CCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000322 1118 SDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1118 ~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1158 (1670)
..... .++|..=.-|..+.++...+++..|++.|..+..
T Consensus 129 ~~~~~--~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~ 167 (608)
T PF10345_consen 129 SETYG--HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQ 167 (608)
T ss_pred HhccC--chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 31111 2333333333346666666999999998888886
No 224
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=81.77 E-value=1.3e+02 Score=40.86 Aligned_cols=289 Identities=18% Similarity=0.147 Sum_probs=163.3
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-------------CCCCchHHHHHHHHHhhC---CCCHHHHHHHHhc
Q 000322 1030 EGMKKALSLLSRALEADPTSEILWITYLLIFYS-------------NTNSVGKDDMFSYSVKHN---EGSYALWLMYINS 1093 (1670)
Q Consensus 1030 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~-------------~~~~eea~emlekAVeln---P~NY~LwlmYIns 1093 (1670)
+++..-+.+..+.|+-++++ |..|...+.+ ..-.......-++|.+.- -.+-.|+++-+..
T Consensus 240 ~~w~~l~~l~~~Ll~k~~Dd---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~k 316 (932)
T KOG2053|consen 240 NRWQELFELSSRLLEKGNDD---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDK 316 (932)
T ss_pred cChHHHHHHHHHHHHhCCcc---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHH
Confidence 34556666677777777777 3333221111 111112334444444333 3344577777777
Q ss_pred CCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHH
Q 000322 1094 RTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSD 1173 (1670)
Q Consensus 1094 r~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsK 1173 (1670)
+-.+.++ .++++..| .+.+ +++ +-|..|+-.++..| +.++.+.-++++.. ..+ ..+
T Consensus 317 r~~~~gd---~ee~~~~y---~~kf-g~k---pcc~~Dl~~yl~~l-----~~~q~~~l~~~l~~-----~~~-~~s--- 372 (932)
T KOG2053|consen 317 RYKLIGD---SEEMLSYY---FKKF-GDK---PCCAIDLNHYLGHL-----NIDQLKSLMSKLVL-----ADD-DSS--- 372 (932)
T ss_pred HhcccCC---hHHHHHHH---HHHh-CCC---cHhHhhHHHhhccC-----CHHHHHHHHHHhhc-----cCC-cch---
Confidence 7644443 37888888 4445 343 34556666555444 34445555555553 221 111
Q ss_pred HHHhhccCCcchhhH------HHHHHHHhhccchHHHhhhh-hhhhhhccCCC-CcccchhhHHHHHHHHHHH----HHH
Q 000322 1174 ILTCLTISDKLIFWV------CCVYLVIYRKLPDAVLQLLE-CEKELFAIDWP-PVQLEDDEKQRAIKLIEMA----VNS 1241 (1670)
Q Consensus 1174 i~~YLt~sDR~~AWL------~~iYllrYrvLPGn~y~q~e-~~KEAf~I~W~-y~~vlkdEPdnalAL~smA----~dY 1241 (1670)
+|.++.|. +-.+.-.|-.||.+=....- +-+-.|.-+-. ...++.+|-.....+..+| +|.
T Consensus 373 -------~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~ 445 (932)
T KOG2053|consen 373 -------GDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDL 445 (932)
T ss_pred -------hhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHH
Confidence 55544432 22234456666665444433 22222322111 3445566655553333333 456
Q ss_pred HhhhcCCcchhhhh---------hhchhhHhHHHHHHHHHHhcCHHHHHHHHHHH-HHhCCCchhHHHHHHHHhhcccCC
Q 000322 1242 VELYSNGESLEKET---------NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKY-IKLYPSCLELVLMKARLQKHDFGD 1311 (1670)
Q Consensus 1242 Y~~~~ndesla~~~---------~~kt~~~fKLN~IR~lI~LEDse~A~~Lfdkl-Lk~~P~d~eL~L~AAyL~~K~m~~ 1311 (1670)
|+. +||+..--+. +....-.+|+-.||.|-.++-...|.++|+.+ +|.-+.|.-=-+...++..-++-.
T Consensus 446 ~rk-tnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~t~g~~~ 524 (932)
T KOG2053|consen 446 WRK-TNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAETSGRSS 524 (932)
T ss_pred HHh-cCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHHHhcccch
Confidence 666 7765522221 45556678888888887788888888888776 444444433366777777777777
Q ss_pred ccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000322 1312 LSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1357 (1670)
Q Consensus 1312 ~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ 1357 (1670)
.+...|...+.+--++.. =.--||..|.+.|.|+++++...-
T Consensus 525 ~~s~~~~~~lkfy~~~~k----E~~eyI~~AYr~g~ySkI~em~~f 566 (932)
T KOG2053|consen 525 FASNTFNEHLKFYDSSLK----ETPEYIALAYRRGAYSKIPEMLAF 566 (932)
T ss_pred hHHHHHHHHHHHHhhhhh----hhHHHHHHHHHcCchhhhHHHHHH
Confidence 777888888877666655 455678899999999999887643
No 225
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=81.22 E-value=4.5 Score=51.01 Aligned_cols=112 Identities=16% Similarity=0.249 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----------HH----------HHHHh
Q 000322 1033 KKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----------LW----------LMYIN 1092 (1670)
Q Consensus 1033 dAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----------Lw----------lmYIn 1092 (1670)
.+-..+=.+||+++|+-+.+|.-++.-. -.+..++.++|++||+....++. .| .+|++
T Consensus 185 ~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~K 262 (539)
T PF04184_consen 185 QARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAK 262 (539)
T ss_pred HHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhH
Confidence 4444455789999999999999987752 22345788999999988776665 11 26666
Q ss_pred cC-----CCcccchhhHHHHHHHHHHhhhcCCC-CcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Q 000322 1093 SR-----TPLNHRLDAYDAALSVLCRCASASDG-DEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1157 (1670)
Q Consensus 1093 sr-----~slddrl~~YdkAI~aLe~las~~~~-Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLE 1157 (1670)
-+ |+++ ...+||..+-++.+-+|. |. +-|-..|+..+.-.+.|+.+-..|.+..
T Consensus 263 rRLAmCarklG----r~~EAIk~~rdLlke~p~~~~-------l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLG----RLREAIKMFRDLLKEFPNLDN-------LNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhC----ChHHHHHHHHHHHhhCCccch-------hhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 55 1122 228899999999887743 33 5566778899999999999988665554
No 226
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=80.52 E-value=1.7e+02 Score=36.83 Aligned_cols=83 Identities=17% Similarity=0.143 Sum_probs=67.2
Q ss_pred cchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccc
Q 000322 1027 NKLEGMKKALSLLSRALEA--DPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHR 1100 (1670)
Q Consensus 1027 n~~g~ydAALdLLsrALEI--NPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddr 1100 (1670)
+..|+++.|-.+|.++-|. |++=+ +....+.+-..++.-..+.+-...+.+..|.+-. .-..|+.++
T Consensus 129 ~qrgd~~~an~yL~eaae~~~~~~l~-v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g------ 201 (400)
T COG3071 129 QQRGDEDRANRYLAEAAELAGDDTLA-VELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLG------ 201 (400)
T ss_pred HhcccHHHHHHHHHHHhccCCCchHH-HHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhc------
Confidence 4568889999999999998 44433 3334466766788778899999999999999998 448899999
Q ss_pred hhhHHHHHHHHHHhhhcC
Q 000322 1101 LDAYDAALSVLCRCASAS 1118 (1670)
Q Consensus 1101 l~~YdkAI~aLe~las~~ 1118 (1670)
+|...+.++..+.+..
T Consensus 202 --~~~~ll~~l~~L~ka~ 217 (400)
T COG3071 202 --AWQALLAILPKLRKAG 217 (400)
T ss_pred --cHHHHHHHHHHHHHcc
Confidence 9999999999988864
No 227
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.38 E-value=6.3 Score=46.33 Aligned_cols=101 Identities=15% Similarity=0.070 Sum_probs=79.7
Q ss_pred HHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHH
Q 000322 1014 CVEMALLILNQDANKLEGMKKALSLLSRALEADPT---SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMY 1090 (1670)
Q Consensus 1014 WLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPt---SaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmY 1090 (1670)
--..|+.++.. |+|+.|-..|..-+.-.|+ .+.++|-|+..|+.+++.+++-..|..+++-.|++-+.--++
T Consensus 144 ~Y~~A~~~~ks-----gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal 218 (262)
T COG1729 144 LYNAALDLYKS-----GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL 218 (262)
T ss_pred HHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence 34456655544 5689999999999999999 578999999999999999999999999999999988844444
Q ss_pred HhcCCCcccchhhHHHHHHHHHHhhhcCCCC
Q 000322 1091 INSRTPLNHRLDAYDAALSVLCRCASASDGD 1121 (1670)
Q Consensus 1091 Insr~slddrl~~YdkAI~aLe~las~~~~D 1121 (1670)
++....+. ++-+-++|...|.+..+.+ |+
T Consensus 219 lKlg~~~~-~l~~~d~A~atl~qv~k~Y-P~ 247 (262)
T COG1729 219 LKLGVSLG-RLGNTDEACATLQQVIKRY-PG 247 (262)
T ss_pred HHHHHHHH-HhcCHHHHHHHHHHHHHHC-CC
Confidence 44332111 2226799999999999999 55
No 228
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=79.71 E-value=77 Score=40.36 Aligned_cols=167 Identities=13% Similarity=0.202 Sum_probs=95.8
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH--HHHHHHhcCCCcccchhhHHHHHHHHHHhh
Q 000322 1038 LLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--LWLMYINSRTPLNHRLDAYDAALSVLCRCA 1115 (1670)
Q Consensus 1038 LLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~--LwlmYInsr~slddrl~~YdkAI~aLe~la 1115 (1670)
-|.--+.-||++.--||.|.++|-.+++-.+..+||++-. +|-.|. .|-.|+..+.-++ .|..--.+|.+..
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~--~pfp~~~~aw~ly~s~ELA~~----df~svE~lf~rCL 103 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLS--SPFPIMEHAWRLYMSGELARK----DFRSVESLFGRCL 103 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhc--CCCccccHHHHHHhcchhhhh----hHHHHHHHHHHHH
Confidence 4666788899999999999999988888888899999874 444444 9999999884443 3443344444433
Q ss_pred hcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcch--------hh
Q 000322 1116 SASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLI--------FW 1187 (1670)
Q Consensus 1116 s~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~--------AW 1187 (1670)
+.. -. +|+|..-+.- |.+++-+-. |-. + .-..+.|.-.-. |+ +|
T Consensus 104 ~k~--l~-------ldLW~lYl~Y----------IRr~n~~~t----Gq~-r---~~i~~ayefv~~-~~~~e~~s~~~W 155 (660)
T COG5107 104 KKS--LN-------LDLWMLYLEY----------IRRVNNLIT----GQK-R---FKIYEAYEFVLG-CAIFEPQSENYW 155 (660)
T ss_pred hhh--cc-------HhHHHHHHHH----------HHhhCcccc----cch-h---hhhHHHHHHHHh-cccccccccchH
Confidence 332 12 6666543332 232222221 110 0 111222322111 22 38
Q ss_pred HHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHh
Q 000322 1188 VCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVE 1243 (1670)
Q Consensus 1188 L~~iYllrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~ 1243 (1670)
=-+.-.++|..-.+.|-.|..- ...=.+ |.+.+.+.=+|.-+|-.. ++..+
T Consensus 156 ~ey~~fle~~~~~~kwEeQqri-d~iR~~---Y~ral~tP~~nleklW~d-y~~fE 206 (660)
T COG5107 156 DEYGLFLEYIEELGKWEEQQRI-DKIRNG---YMRALQTPMGNLEKLWKD-YENFE 206 (660)
T ss_pred HHHHHHHHhccccccHHHHHHH-HHHHHH---HHHHHcCccccHHHHHHH-HHHHH
Confidence 7777789998888888755431 111123 344444444666666654 44444
No 229
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=78.78 E-value=10 Score=47.93 Aligned_cols=100 Identities=15% Similarity=0.232 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHHHHHH
Q 000322 1033 KKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLC 1112 (1670)
Q Consensus 1033 dAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~aLe 1112 (1670)
..-..+|++|+.-.+.+.-+|..|+.+-.+.+...+.-..|.+++.+.|+|-.||-+...-. +...+ ..+.|+.++-
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~we--fe~n~-ni~saRalfl 164 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWE--FEINL-NIESARALFL 164 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhH--Hhhcc-chHHHHHHHH
Confidence 45567999999999999999999999988888788888999999999999999988777644 44444 4689999998
Q ss_pred HhhhcCCCCcchhhhhhHHHHHHHHHHHHHh
Q 000322 1113 RCASASDGDEMHASACILDLFLQMLQCFCMS 1143 (1670)
Q Consensus 1113 ~las~~~~Dr~~~Sa~iLDILL~LvqLY~qS 1143 (1670)
+...-+ |+- .++|...+.+..+-
T Consensus 165 rgLR~n-pds-------p~Lw~eyfrmEL~~ 187 (568)
T KOG2396|consen 165 RGLRFN-PDS-------PKLWKEYFRMELMY 187 (568)
T ss_pred HHhhcC-CCC-------hHHHHHHHHHHHHH
Confidence 888888 676 77887777766653
No 230
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=78.78 E-value=3.5 Score=29.15 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHhhccC
Q 000322 1408 GYLNLSLHRLLQNDWNEARLAIDAALKAAAS 1438 (1670)
Q Consensus 1408 a~LGD~L~q~Lqg~~~EAfaAYDKALkanp~ 1438 (1670)
..+|.+++. .+++++|..+|+++++..|.
T Consensus 5 ~~~a~~~~~--~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 5 YNLGNAYLK--LGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHH--HhhHHHHHHHHHHHHccCCC
Confidence 577888888 99999999999999998875
No 231
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=77.49 E-value=0.89 Score=51.40 Aligned_cols=34 Identities=38% Similarity=0.815 Sum_probs=29.1
Q ss_pred cccccCCCCCCC-ccceecccccccCCCCchhhhh
Q 000322 845 SYTCNLAIDPLW-PLCMYELRGKCNNDECPWQHVK 878 (1670)
Q Consensus 845 S~t~s~~idp~~-~lC~fel~G~CNd~~C~wQH~~ 878 (1670)
--..|+.+||.. |-|||-|-|+||+..|++-|.-
T Consensus 249 dcnlsheldprripacryfllgkcnnpncryvhih 283 (377)
T KOG1492|consen 249 DCNLSHELDPRRIPACRYFLLGKCNNPNCRYVHIH 283 (377)
T ss_pred cCCcccccCccccchhhhhhhccCCCCCceEEEEe
Confidence 344589999975 8999999999999999999864
No 232
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=76.92 E-value=2.4e+02 Score=36.69 Aligned_cols=133 Identities=17% Similarity=0.229 Sum_probs=85.3
Q ss_pred ccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCC--CHH----HHHHHHHHHHhCCCCchHHHHHHHHHhhCCC
Q 000322 1009 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPT--SEI----LWITYLLIFYSNTNSVGKDDMFSYSVKHNEG 1082 (1670)
Q Consensus 1009 ~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPt--Sae----aWy~yl~lY~~~~~~eea~emlekAVelnP~ 1082 (1670)
+|...-+++|.-++..-.| ++.|-..|++++.+.-. =.+ +-+.++.+|.+.+... +...+.++++....
T Consensus 57 ~ea~~~l~la~iL~~eT~n----~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 57 QEARVRLRLASILLEETEN----LDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET 131 (608)
T ss_pred HHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc
Confidence 5668888888888887654 89999999999888744 222 2345577877777555 99999999988743
Q ss_pred ---CHHHH-------HHHHhcCCCcccchhhHHHHHHHHHHhhhcCC--CCcchhhhhhHHHHHHHHHHHHHhcCHHHHH
Q 000322 1083 ---SYALW-------LMYINSRTPLNHRLDAYDAALSVLCRCASASD--GDEMHASACILDLFLQMLQCFCMSGNTEKAI 1150 (1670)
Q Consensus 1083 ---NY~Lw-------lmYInsr~slddrl~~YdkAI~aLe~las~~~--~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI 1150 (1670)
+.|.| ..++..+ .+..|++.|...+.... +|. ..+.+.=++.++++ .+.+..+.++
T Consensus 132 ~~~~~w~~~frll~~~l~~~~~--------d~~~Al~~L~~~~~~a~~~~d~--~~~v~~~l~~~~l~--l~~~~~~d~~ 199 (608)
T PF10345_consen 132 YGHSAWYYAFRLLKIQLALQHK--------DYNAALENLQSIAQLANQRGDP--AVFVLASLSEALLH--LRRGSPDDVL 199 (608)
T ss_pred cCchhHHHHHHHHHHHHHHhcc--------cHHHHHHHHHHHHHHhhhcCCH--HHHHHHHHHHHHHH--hcCCCchhHH
Confidence 24422 2222222 67889999877665431 232 22222223333333 4567777788
Q ss_pred HHHHhhcc
Q 000322 1151 QRISRLLI 1158 (1670)
Q Consensus 1151 ~ti~rLEq 1158 (1670)
+.++++..
T Consensus 200 ~~l~~~~~ 207 (608)
T PF10345_consen 200 ELLQRAIA 207 (608)
T ss_pred HHHHHHHH
Confidence 88877754
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=76.09 E-value=6.5 Score=49.16 Aligned_cols=103 Identities=18% Similarity=0.191 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHHhCCCchhHHHHHHHHh-hcccCCccHHHHHHHHHhCCCCCc-hHHHHHHHHHHHHHHcCChHHHHH
Q 000322 1276 GLECSMNLLEKYIKLYPSCLELVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGVP-GIQCIWNQYVEYALQNGRHDFAAE 1353 (1670)
Q Consensus 1276 Dse~A~~LfdklLk~~P~d~eL~L~AAyL~-~K~m~~~A~svle~AL~~~PkNa~-g~~caW~QLIq~al~~en~d~Ai~ 1353 (1670)
+.+.|.++++...+.||..+=..+..++|. .++..++|+..|+.++....+=.+ -+.|.|....-+.. ..+|.+|..
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~-~~~w~~A~~ 326 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF-QHDWEEAAE 326 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH-HchHHHHHH
Confidence 778999999999999999988866667764 444589999999999853333333 46677766555555 448999888
Q ss_pred HHHH-------------HHHhhhhccc-cc-------ccchhhhccc
Q 000322 1354 LMDR-------------WFHSVWKVQY-SQ-------VEISDPLVAD 1379 (1670)
Q Consensus 1354 Lc~~-------------ff~gia~~Q~-~~-------deALDaLrkg 1379 (1670)
...+ |+.++++... +. ++|.+.+++.
T Consensus 327 ~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 327 YFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 7777 6666776666 44 5666666644
No 234
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=75.93 E-value=43 Score=39.00 Aligned_cols=93 Identities=17% Similarity=0.130 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHHHHHHHhhh-cCCcchhhhhhhchhhHhHHHHHHHHHH--hc-----CHHHHHHHHHHHHHhCCCchhH
Q 000322 1226 DEKQRAIKLIEMAVNSVELY-SNGESLEKETNLRSAHCFAVNHIWCMAV--LN-----GLECSMNLLEKYIKLYPSCLEL 1297 (1670)
Q Consensus 1226 dEPdnalAL~smA~dYY~~~-~ndesla~~~~~kt~~~fKLN~IR~lI~--LE-----Dse~A~~LfdklLk~~P~d~eL 1297 (1670)
++++.+...++.|+++++.. ..+.. ..-...+++..+|.++. ++ +.++|.++.+.+-..+|.-+.+
T Consensus 50 ~~~~~a~~wL~~a~~~l~~~~~~~~~------~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~ 123 (278)
T PF08631_consen 50 DKYEEAVKWLQRAYDILEKPGKMDKL------SPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEV 123 (278)
T ss_pred CChHHHHHHHHHHHHHHHhhhhcccc------CCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHH
Confidence 46688888899999998641 11100 11223455555555543 22 7778999999999999999999
Q ss_pred -HHHHHHHhhcccCCccH-HHHHHHHHhCC
Q 000322 1298 -VLMKARLQKHDFGDLSS-VGFEEALIKWP 1325 (1670)
Q Consensus 1298 -~L~AAyL~~K~m~~~A~-svle~AL~~~P 1325 (1670)
+|+-..+.. .+..++. .++.+++..-+
T Consensus 124 ~~L~l~il~~-~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 124 FLLKLEILLK-SFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHhc-cCChhHHHHHHHHHHHhcc
Confidence 566666555 3344444 77777777655
No 235
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=75.86 E-value=7.8 Score=47.07 Aligned_cols=130 Identities=14% Similarity=0.194 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHhhhcCCCCcc----hhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhh
Q 000322 1103 AYDAALSVLCRCASASDGDEM----HASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCL 1178 (1670)
Q Consensus 1103 ~YdkAI~aLe~las~~~~Dr~----~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YL 1178 (1670)
.|.+|-..|.......|++.. +...+=.|.||++...+.++|+++.|-.-|+|-+= .-+ ......|..+.
T Consensus 9 ~Y~~~q~~F~~~v~~~Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf-----~~e-~~~~~~F~~~~ 82 (360)
T PF04910_consen 9 AYQEAQEQFYAAVQSHDPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALF-----AFE-RAFHPSFSPFR 82 (360)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHH-HHHHHHhhhhh
Confidence 455555555544444433310 11224489999999999999999999886666442 011 11112222211
Q ss_pred ccCCcchhhHHH-------HHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHH-HHHHHHHHHHHHHhh
Q 000322 1179 TISDKLIFWVCC-------VYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQ-RAIKLIEMAVNSVEL 1244 (1670)
Q Consensus 1179 t~sDR~~AWL~~-------iYllrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPd-nalAL~smA~dYY~~ 1244 (1670)
-.-......|-+ .|+..|+.| ..+.+.||..-||++ ..-++.-||+ .++...-+ +|||..
T Consensus 83 ~~~~~g~~rL~~~~~eNR~fflal~r~i--~~L~~RG~~rTAlE~---~KlLlsLdp~~DP~g~ll~-ID~~AL 150 (360)
T PF04910_consen 83 SNLTSGNCRLDYRRPENRQFFLALFRYI--QSLGRRGCWRTALEW---CKLLLSLDPDEDPLGVLLF-IDYYAL 150 (360)
T ss_pred cccccCccccCCccccchHHHHHHHHHH--HHHHhcCcHHHHHHH---HHHHHhcCCCCCcchhHHH-HHHHHH
Confidence 111111111222 234445544 357788999999998 7778888888 77777666 799986
No 236
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=75.25 E-value=4.3 Score=49.18 Aligned_cols=107 Identities=14% Similarity=0.030 Sum_probs=78.8
Q ss_pred cchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHH
Q 000322 1199 LPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLE 1278 (1670)
Q Consensus 1199 LPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse 1278 (1670)
--|+-|+..|+..||+++ |.....-+|.|++....-|+.|.+. . ++..+-+|.+
T Consensus 102 E~GN~yFKQgKy~EAIDC---Ys~~ia~~P~NpV~~~NRA~AYlk~---------------------K--~FA~AE~DC~ 155 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDC---YSTAIAVYPHNPVYHINRALAYLKQ---------------------K--SFAQAEEDCE 155 (536)
T ss_pred HhhhhhhhccchhHHHHH---hhhhhccCCCCccchhhHHHHHHHH---------------------H--HHHHHHHhHH
Confidence 368889999999999999 9999999999999888877777763 1 1112333888
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHH
Q 000322 1279 CSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEY 1341 (1670)
Q Consensus 1279 ~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~ 1341 (1670)
.|+.|=+.|++.|-.- .+++-..+ |..+|..-++.+|.++|++-+ +.-||...
T Consensus 156 ~AiaLd~~Y~KAYSRR-----~~AR~~Lg-~~~EAKkD~E~vL~LEP~~~E----LkK~~a~i 208 (536)
T KOG4648|consen 156 AAIALDKLYVKAYSRR-----MQARESLG-NNMEAKKDCETVLALEPKNIE----LKKSLARI 208 (536)
T ss_pred HHHHhhHHHHHHHHHH-----HHHHHHHh-hHHHHHHhHHHHHhhCcccHH----HHHHHHHh
Confidence 8888888888876543 23443333 466788889999999999877 66665543
No 237
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=74.45 E-value=1e+02 Score=35.63 Aligned_cols=188 Identities=18% Similarity=0.138 Sum_probs=106.6
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHH
Q 000322 1029 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAAL 1108 (1670)
Q Consensus 1029 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI 1108 (1670)
......-+...+.=|..-+.+...|-.++.+- . -+|. .+.........|+.+++.-++-+ .|+.|.
T Consensus 101 ~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R------~---~~l~-~~~~~~~~~~~~l~~a~~aRk~g----~~~~A~ 166 (352)
T PF02259_consen 101 PQDLKSLLKRWRSRLPNMQDDFSVWEPILSLR------R---LVLS-LILLPEELAETWLKFAKLARKAG----NFQLAL 166 (352)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHH------H---HHHh-cccchhHHHHHHHHHHHHHHHCC----CcHHHH
Confidence 34455566666666776677777887776651 1 1111 11112223335555554332222 678888
Q ss_pred HHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhh----ccC---
Q 000322 1109 SVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCL----TIS--- 1181 (1670)
Q Consensus 1109 ~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YL----t~s--- 1181 (1670)
.++.++....+.. +.....+.+..+++.-.+|+-++||..|..+......+... ...-..+..-+ ...
T Consensus 167 ~~l~~~~~~~~~~----~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 241 (352)
T PF02259_consen 167 SALNRLFQLNPSS----ESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNID-SISNAELKSGLLESLEVISST 241 (352)
T ss_pred HHHHHHhccCCcc----cCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccc-cccHHHHhhcccccccccccc
Confidence 8887776644111 12247788999999999999999999888777522222110 00111111100 000
Q ss_pred --CcchhhHHHHHHHHhhccchHHHhhh------hhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHh
Q 000322 1182 --DKLIFWVCCVYLVIYRKLPDAVLQLL------ECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVE 1243 (1670)
Q Consensus 1182 --DR~~AWL~~iYllrYrvLPGn~y~q~------e~~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~ 1243 (1670)
+....-+ ..+...+.|.|.+.. +..+++... |....+.+|+..-+.+..| .+|.
T Consensus 242 ~~~~~~~~~----~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~k~~~~~a-~~~~ 303 (352)
T PF02259_consen 242 NLDKESKEL----KAKAFLLLAKWLDELYSKLSSESSDEILKY---YKEATKLDPSWEKAWHSWA-LFND 303 (352)
T ss_pred chhhhhHHH----HHHHHHHHHHHHHhhccccccccHHHHHHH---HHHHHHhChhHHHHHHHHH-HHHH
Confidence 1100111 122234567787777 678888888 8888999999999888876 4443
No 238
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.24 E-value=1.5 Score=52.92 Aligned_cols=136 Identities=15% Similarity=0.090 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHH
Q 000322 1226 DEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKAR 1303 (1670)
Q Consensus 1226 dEPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAy 1303 (1670)
.+|+....+ +|+ ++|.. +..|..... ++.++.-+.. .-.+.++.|+++|.+.++++|..+.| .=..++
T Consensus 89 iepd~d~pq-~MG-ds~~e-~Tee~~eqa------~e~k~~A~eA-ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~ 158 (377)
T KOG1308|consen 89 IEPDTDAPQ-EMG-DSNAE-ITEEMMDQA------NDKKVQASEA-LNDGEFDTAIELFTSAIELNPPLAILYAKRASVF 158 (377)
T ss_pred cccCCCcch-hhc-hhhhh-hhHHHHHHH------HHHHHHHHHH-hcCcchhhhhcccccccccCCchhhhccccccee
Confidence 367777777 774 66654 332222222 3444432221 11447999999999999999999999 777788
Q ss_pred HhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCC
Q 000322 1304 LQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSH 1382 (1670)
Q Consensus 1304 L~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~ 1382 (1670)
|..++ +..++.-+..|++++|+.+.++ .|--++..+ .++|.++...++..- +..++++.++.-+-+.|
T Consensus 159 lkl~k-p~~airD~d~A~ein~Dsa~~y--kfrg~A~rl--lg~~e~aa~dl~~a~------kld~dE~~~a~lKeV~p 226 (377)
T KOG1308|consen 159 LKLKK-PNAAIRDCDFAIEINPDSAKGY--KFRGYAERL--LGNWEEAAHDLALAC------KLDYDEANSATLKEVFP 226 (377)
T ss_pred eeccC-CchhhhhhhhhhccCccccccc--chhhHHHHH--hhchHHHHHHHHHHH------hccccHHHHHHHHHhcc
Confidence 88888 9999999999999999999833 443333333 467888877765411 12666666666555444
No 239
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.85 E-value=1.8 Score=52.36 Aligned_cols=117 Identities=17% Similarity=0.164 Sum_probs=86.7
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH--HHHHHHhcCCCcccchhhH
Q 000322 1027 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--LWLMYINSRTPLNHRLDAY 1104 (1670)
Q Consensus 1027 n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~--LwlmYInsr~slddrl~~Y 1104 (1670)
+..|.+++|+..|-+++++||.++.++..-+..|...+.+..+..-|-.|++++|++.. -|-=|++-- +-.+
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl------lg~~ 198 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL------LGNW 198 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHH------hhch
Confidence 45677899999999999999999999999999999999999999999999999998876 444444422 1155
Q ss_pred HHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHH
Q 000322 1105 DAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQ 1151 (1670)
Q Consensus 1105 dkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ 1151 (1670)
++|...|..+.+.. -| ...++|+-++.-..=.+.---+.|+.+.+
T Consensus 199 e~aa~dl~~a~kld-~d-E~~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 199 EEAAHDLALACKLD-YD-EANSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHHHHhcc-cc-HHHHHHHHHhccchhhhhhchhHHHHHHH
Confidence 77777775554433 23 34677777776666555555555655544
No 240
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=72.89 E-value=5.1 Score=48.60 Aligned_cols=58 Identities=14% Similarity=0.194 Sum_probs=51.8
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH
Q 000322 1027 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1085 (1670)
Q Consensus 1027 n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~ 1085 (1670)
.+-|.|+.|++-|++++.++|.++..+..-+..|.+.+.=..+..-|..||.++ +.|.
T Consensus 108 FKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~ 165 (536)
T KOG4648|consen 108 FKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYV 165 (536)
T ss_pred hhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHH
Confidence 456889999999999999999999999999999988887777889999999999 5555
No 241
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.53 E-value=1.1e+02 Score=37.31 Aligned_cols=280 Identities=16% Similarity=0.090 Sum_probs=147.3
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHHHH
Q 000322 1031 GMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSV 1110 (1670)
Q Consensus 1031 ~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~a 1110 (1670)
+|..|+.++..-+|.+|.+-..+..++..||...+-..+-++|++--.+.|.-...-++|..+-..-. .|.+|+.+
T Consensus 25 ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~----i~ADALrV 100 (459)
T KOG4340|consen 25 RYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC----IYADALRV 100 (459)
T ss_pred hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc----ccHHHHHH
Confidence 57889999999999999999999999999988887788889999998888865444444443321110 23334443
Q ss_pred HHHhhhc----------------CCCCc-chh-------hhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCc
Q 000322 1111 LCRCASA----------------SDGDE-MHA-------SACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDR 1166 (1670)
Q Consensus 1111 Le~las~----------------~~~Dr-~~~-------Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE 1166 (1670)
+..+.-. ...|. ..+ |----|++.-..=|.-+.|+|+.|+++.+.-.+ ..|-+|
T Consensus 101 ~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlq--vsGyqp 178 (459)
T KOG4340|consen 101 AFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQ--VSGYQP 178 (459)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHh--hcCCCc
Confidence 3222110 00000 000 000023444444566678899999988776666 667776
Q ss_pred ccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhc
Q 000322 1167 HSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYS 1246 (1670)
Q Consensus 1167 ~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ 1246 (1670)
-+.-+-...+...+|+.. -|.++-++.=|-+-..=-+.-|..-|..++ ---.|...|-.-|
T Consensus 179 -llAYniALaHy~~~qyas-ALk~iSEIieRG~r~HPElgIGm~tegiDv---------rsvgNt~~lh~Sa-------- 239 (459)
T KOG4340|consen 179 -LLAYNLALAHYSSRQYAS-ALKHISEIIERGIRQHPELGIGMTTEGIDV---------RSVGNTLVLHQSA-------- 239 (459)
T ss_pred -hhHHHHHHHHHhhhhHHH-HHHHHHHHHHhhhhcCCccCccceeccCch---------hcccchHHHHHHH--------
Confidence 455555555566666622 344444444443311000111111111110 0001222221110
Q ss_pred CCcchhhhhhhchhhHhHHHHHHHHHH--hcCHHHHHHHHHHHHHhCCCchh----HHHHHHHH-hhcccCCccHHHHHH
Q 000322 1247 NGESLEKETNLRSAHCFAVNHIWCMAV--LNGLECSMNLLEKYIKLYPSCLE----LVLMKARL-QKHDFGDLSSVGFEE 1319 (1670)
Q Consensus 1247 ndesla~~~~~kt~~~fKLN~IR~lI~--LEDse~A~~LfdklLk~~P~d~e----L~L~AAyL-~~K~m~~~A~svle~ 1319 (1670)
.--++| +...|. .++.+.|++ .++.++|..-. +.|.-.-| .+..-+.++..-+.-
T Consensus 240 --------------l~eAfN-LKaAIeyq~~n~eAA~e---aLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqF 301 (459)
T KOG4340|consen 240 --------------LVEAFN-LKAAIEYQLRNYEAAQE---ALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQF 301 (459)
T ss_pred --------------HHHHhh-hhhhhhhhcccHHHHHH---HhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHH
Confidence 111222 222232 447777774 56677775432 13333333 333337788877888
Q ss_pred HHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000322 1320 ALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1357 (1670)
Q Consensus 1320 AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ 1357 (1670)
.|.++| .| +..|--++-..-.++=++.|..++.+
T Consensus 302 LL~~nP--fP--~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 302 LLQQNP--FP--PETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHhcCC--CC--hHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 899988 33 23444444444445556666666655
No 242
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=72.43 E-value=32 Score=37.44 Aligned_cols=69 Identities=10% Similarity=0.076 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH
Q 000322 1012 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPT---SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1085 (1670)
Q Consensus 1012 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPt---SaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~ 1085 (1670)
+.+...|...|.. |+|+.|...|.....-.|. +..+-..++-.|+..++-+++...+++=++++|.+-.
T Consensus 11 ~~ly~~a~~~l~~-----~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 11 QELYQEAQEALQK-----GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHHHHHHHh-----CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 4555566665554 6789999999999999987 5677788888888999999999999999999998866
No 243
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.91 E-value=70 Score=38.48 Aligned_cols=165 Identities=9% Similarity=0.064 Sum_probs=108.2
Q ss_pred hhhhhhhcccc---HHHHHHHHHHHhcccc---cchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhCCCCchHHHH
Q 000322 1000 VLNKLKQVELS---NEQCVEMALLILNQDA---NKLEGMKKALSLLSRALEAD-PTSEILWITYLLIFYSNTNSVGKDDM 1072 (1670)
Q Consensus 1000 ~i~~le~~~~d---~qlWLelAl~~Lnq~~---n~~g~ydAALdLLsrALEIN-PtSaeaWy~yl~lY~~~~~~eea~em 1072 (1670)
.|+++|++..+ +++|=+---..++.-. .-.+.|.-.+++|...++-| |..+.+...+..+-++.|..+.+..+
T Consensus 155 ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~y 234 (366)
T KOG2796|consen 155 ILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKY 234 (366)
T ss_pred HHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHH
Confidence 35666666542 2677543322111111 22466888999999999999 77999999999999999987778888
Q ss_pred HH----HHHhhCCCCHH------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHH--HHHHHHH
Q 000322 1073 FS----YSVKHNEGSYA------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLF--LQMLQCF 1140 (1670)
Q Consensus 1073 le----kAVelnP~NY~------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDIL--L~LvqLY 1140 (1670)
|+ -+=+++.--.. -+.+|+.+. +|..|..+|.+.....+.+. -.. =+|.+||
T Consensus 235 f~~vek~~~kL~~~q~~~~V~~n~a~i~lg~n--------n~a~a~r~~~~i~~~D~~~~--------~a~NnKALcllY 298 (366)
T KOG2796|consen 235 FQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQN--------NFAEAHRFFTEILRMDPRNA--------VANNNKALCLLY 298 (366)
T ss_pred HHHHHHHHhhhhccchhHHHHhhhhhheeccc--------chHHHHHHHhhccccCCCch--------hhhchHHHHHHH
Confidence 88 34344422222 567788888 88889888876666553331 111 1344444
Q ss_pred HHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhh
Q 000322 1141 CMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYR 1197 (1670)
Q Consensus 1141 ~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYr 1197 (1670)
.|+...||.+|..+.+ ..|+. +..+.-++-||.+|++.|-
T Consensus 299 --lg~l~DAiK~~e~~~~-----~~P~~----------~l~es~~~nL~tmyEL~Ys 338 (366)
T KOG2796|consen 299 --LGKLKDALKQLEAMVQ-----QDPRH----------YLHESVLFNLTTMYELEYS 338 (366)
T ss_pred --HHHHHHHHHHHHHHhc-----cCCcc----------chhhhHHHHHHHHHHHHhh
Confidence 5888999999888776 33321 2234445689999998883
No 244
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.47 E-value=34 Score=41.26 Aligned_cols=114 Identities=17% Similarity=0.195 Sum_probs=80.1
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHH----HHHHhcCCCcccchhhH
Q 000322 1029 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALW----LMYINSRTPLNHRLDAY 1104 (1670)
Q Consensus 1029 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~Lw----lmYInsr~slddrl~~Y 1104 (1670)
.|++..|..+|+.++..+|+++++-.-|+..|...+..+.++..+...=.-..+.-+.. .-.+.+-....
T Consensus 147 ~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~------ 220 (304)
T COG3118 147 AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP------ 220 (304)
T ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC------
Confidence 46679999999999999999999999999999999988877777665311111121111 11111111111
Q ss_pred HHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000322 1105 DAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1105 dkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1158 (1670)
+ +..|++....+ |+. .+.=+.+.+.|...|+++.|+..|=.|+.
T Consensus 221 -~-~~~l~~~~aad-Pdd-------~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 221 -E-IQDLQRRLAAD-PDD-------VEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred -C-HHHHHHHHHhC-CCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 23455556666 544 89999999999999999999998877775
No 245
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=68.72 E-value=45 Score=38.33 Aligned_cols=130 Identities=15% Similarity=0.074 Sum_probs=89.5
Q ss_pred CCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH-----------HHHhhhhccc---ccccchhh
Q 000322 1310 GDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR-----------WFHSVWKVQY---SQVEISDP 1375 (1670)
Q Consensus 1310 ~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~-----------ff~gia~~Q~---~~deALDa 1375 (1670)
|+....-..+.+.+.|.+.. ++.|..-+.+.|++.+|.++-.+ -++|.+.-|. +..++.-+
T Consensus 72 P~R~~Rea~~~~~~ApTvqn-----r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~t 146 (251)
T COG4700 72 PERHLREATEELAIAPTVQN-----RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQT 146 (251)
T ss_pred hhHHHHHHHHHHhhchhHHH-----HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHH
Confidence 77776666788888888877 67788888888999999888888 4455555554 55555555
Q ss_pred hcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcC
Q 000322 1376 LVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLIN 1455 (1670)
Q Consensus 1376 Lrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e 1455 (1670)
|.+.... + .+|= +-|-| -+++-.|+- .|+...|..||+-|+.+.|+- . .---|+.||...
T Consensus 147 Le~l~e~-----~----pa~r-----~pd~~-Ll~aR~laa--~g~~a~Aesafe~a~~~ypg~--~-ar~~Y~e~La~q 206 (251)
T COG4700 147 LEDLMEY-----N----PAFR-----SPDGH-LLFARTLAA--QGKYADAESAFEVAISYYPGP--Q-ARIYYAEMLAKQ 206 (251)
T ss_pred HHHHhhc-----C----CccC-----CCCch-HHHHHHHHh--cCCchhHHHHHHHHHHhCCCH--H-HHHHHHHHHHHh
Confidence 5543222 1 1211 22222 567889999 999999999999999999975 2 333599999887
Q ss_pred CCCCCcccc
Q 000322 1456 ESEPKEGAP 1464 (1670)
Q Consensus 1456 ~~dL~KAeq 1464 (1670)
+++-..-++
T Consensus 207 gr~~ea~aq 215 (251)
T COG4700 207 GRLREANAQ 215 (251)
T ss_pred cchhHHHHH
Confidence 764333334
No 246
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=67.87 E-value=5.9 Score=27.96 Aligned_cols=32 Identities=0% Similarity=-0.098 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHhhCCC
Q 000322 1051 ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG 1082 (1670)
Q Consensus 1051 eaWy~yl~lY~~~~~~eea~emlekAVelnP~ 1082 (1670)
.+|+.++.+|...++.+.+...|++|++..|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35566666666666666666666666666553
No 247
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=67.67 E-value=6.6 Score=32.27 Aligned_cols=28 Identities=25% Similarity=0.227 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHhhcc
Q 000322 1408 GYLNLSLHRLLQNDWNEARLAIDAALKAAA 1437 (1670)
Q Consensus 1408 a~LGD~L~q~Lqg~~~EAfaAYDKALkanp 1437 (1670)
..||.++.+ .|++++|...|++||....
T Consensus 3 ~~Lg~~~~~--~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 3 NNLGRIYRQ--QGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHH--CT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--cCCHHHHHHHHHHHHHhcc
Confidence 678999999 9999999999999776554
No 248
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=65.44 E-value=19 Score=44.49 Aligned_cols=127 Identities=19% Similarity=0.146 Sum_probs=79.9
Q ss_pred ccHHHHHHHHHhCCCC-CchHHHHHHHHHHHHHH---cCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCC
Q 000322 1312 LSSVGFEEALIKWPKG-VPGIQCIWNQYVEYALQ---NGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPES 1387 (1670)
Q Consensus 1312 ~A~svle~AL~~~PkN-a~g~~caW~QLIq~al~---~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es 1387 (1670)
+|+--+-.+|..-|.- ..-.+.+..||+-...+ .|+.++|++++.+. +...
T Consensus 158 damI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~-----------------l~~~-------- 212 (374)
T PF13281_consen 158 DAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPV-----------------LESD-------- 212 (374)
T ss_pred HHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHH-----------------Hhcc--------
Confidence 5554455556666533 23344567777777777 78888888888542 2211
Q ss_pred CCCCCcccccccccchhhHHHHHHHHHHHhhhc-------CHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCC
Q 000322 1388 TSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQN-------DWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPK 1460 (1670)
Q Consensus 1388 ~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg-------~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~ 1460 (1670)
....+|+| +++|-+|-.+... ..++|..||.+|...+|+- +--=|+|.-|.+.|.+..
T Consensus 213 -~~~~~d~~-----------gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~---Y~GIN~AtLL~~~g~~~~ 277 (374)
T PF13281_consen 213 -ENPDPDTL-----------GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY---YSGINAATLLMLAGHDFE 277 (374)
T ss_pred -CCCChHHH-----------HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc---cchHHHHHHHHHcCCccc
Confidence 11246766 8999877654332 5789999999999999643 444589999998887666
Q ss_pred cccchhhhHHHHHHHHhh
Q 000322 1461 EGAPISWQLKLLNSYLDR 1478 (1670)
Q Consensus 1461 KAeqMS~~~KtVsTYLDT 1478 (1670)
...++...-.+++.++=.
T Consensus 278 ~~~el~~i~~~l~~llg~ 295 (374)
T PF13281_consen 278 TSEELRKIGVKLSSLLGR 295 (374)
T ss_pred chHHHHHHHHHHHHHHHh
Confidence 554444322223444433
No 249
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=65.40 E-value=2.8e+02 Score=32.54 Aligned_cols=105 Identities=13% Similarity=0.106 Sum_probs=56.6
Q ss_pred hhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHH
Q 000322 1029 LEGMKKALSLLSRALEAD-PTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAA 1107 (1670)
Q Consensus 1029 ~g~ydAALdLLsrALEIN-PtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkA 1107 (1670)
-|+++.|..+|++|=... .-++...-.++.++|..|. +++.+- .+|.-+..++ .+|
T Consensus 6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~-----~l~~~~-----~~~~~a~~wL-------------~~a 62 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGK-----SLLSKK-----DKYEEAVKWL-------------QRA 62 (278)
T ss_pred hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHH-----HHHHcC-----CChHHHHHHH-------------HHH
Confidence 367788888888887766 6666666777777665553 222222 1222211111 344
Q ss_pred HHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHH---HHHHHHHhhc
Q 000322 1108 LSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTE---KAIQRISRLL 1157 (1670)
Q Consensus 1108 I~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnyd---KAI~ti~rLE 1157 (1670)
.++++...+.. ..-...+.-=.-++..++..|...+.++ +|+..++-++
T Consensus 63 ~~~l~~~~~~~-~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~ 114 (278)
T PF08631_consen 63 YDILEKPGKMD-KLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLE 114 (278)
T ss_pred HHHHHhhhhcc-ccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 55543321111 1111122333667888899999888755 4444444443
No 250
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.25 E-value=54 Score=38.78 Aligned_cols=138 Identities=16% Similarity=0.172 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhcccc--cchhhH------------HHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhC-CCCchHH
Q 000322 1012 EQCVEMALLILNQDA--NKLEGM------------KKALSLLSRALEADPT------SEILWITYLLIFYSN-TNSVGKD 1070 (1670)
Q Consensus 1012 qlWLelAl~~Lnq~~--n~~g~y------------dAALdLLsrALEINPt------SaeaWy~yl~lY~~~-~~~eea~ 1070 (1670)
..+++.|.-++.-+. ...-.| ..|.+.|.++++|... ++--...++.+|-.- ..-+.+.
T Consensus 55 ~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI 134 (288)
T KOG1586|consen 55 DAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAI 134 (288)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHH
Confidence 556666666655442 111222 3444666666666543 444455667776322 2234466
Q ss_pred HHHHHHHhhCCCCHH----------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHH
Q 000322 1071 DMFSYSVKHNEGSYA----------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCF 1140 (1670)
Q Consensus 1071 emlekAVelnP~NY~----------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY 1140 (1670)
.+||.|.++-..... ++.+-...+ .|.+||.+||+.++.. -+..-+=--+-|.||.-.=|+
T Consensus 135 ~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~le--------qY~~Ai~iyeqva~~s-~~n~LLKys~KdyflkAgLCh 205 (288)
T KOG1586|consen 135 AHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLE--------QYSKAIDIYEQVARSS-LDNNLLKYSAKDYFLKAGLCH 205 (288)
T ss_pred HHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHh-ccchHHHhHHHHHHHHHHHHh
Confidence 777777666533332 333333333 8999999999988865 332111122346666665555
Q ss_pred HHhcCH---HHHHHHHHhhcc
Q 000322 1141 CMSGNT---EKAIQRISRLLI 1158 (1670)
Q Consensus 1141 ~qSGny---dKAI~ti~rLEq 1158 (1670)
.-..+. ..|++.+..+.+
T Consensus 206 l~~~D~v~a~~ALeky~~~dP 226 (288)
T KOG1586|consen 206 LCKADEVNAQRALEKYQELDP 226 (288)
T ss_pred HhcccHHHHHHHHHHHHhcCC
Confidence 554553 444444444444
No 251
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=64.11 E-value=21 Score=43.12 Aligned_cols=92 Identities=17% Similarity=0.115 Sum_probs=72.4
Q ss_pred hHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHH
Q 000322 1261 HCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYV 1339 (1670)
Q Consensus 1261 ~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLI 1339 (1670)
.-.++++-..+..-+..++|..||.-+|++.|+.+++ .=++.+.++.+....|=..|-+||.+.|-|.. +-
T Consensus 116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse----AL---- 187 (472)
T KOG3824|consen 116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE----AL---- 187 (472)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH----HH----
Confidence 4445554344344568899999999999999999999 66788888877677888999999999999999 52
Q ss_pred HHHHHcCChHHHHHHHHHHHHhh
Q 000322 1340 EYALQNGRHDFAAELMDRWFHSV 1362 (1670)
Q Consensus 1340 q~al~~en~d~Ai~Lc~~ff~gi 1362 (1670)
..++.-.+.+..|=+++|.++
T Consensus 188 --vnR~RT~plV~~iD~r~l~sv 208 (472)
T KOG3824|consen 188 --VNRARTTPLVSAIDRRMLRSV 208 (472)
T ss_pred --hhhhccchHHHHHHHHHHHHH
Confidence 556667788888888877665
No 252
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=63.76 E-value=30 Score=39.16 Aligned_cols=81 Identities=21% Similarity=0.197 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHhCCCchhH---H----HHHHHH----hhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHc
Q 000322 1277 LECSMNLLEKYIKLYPSCLEL---V----LMKARL----QKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQN 1345 (1670)
Q Consensus 1277 se~A~~LfdklLk~~P~d~eL---~----L~AAyL----~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~ 1345 (1670)
++.|++-+......+|.|++- | |-.+.+ +.+.|.++|+.-|++||.++|+.-...-|.=+-|..++.-.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 578999999999999999995 2 222222 23456789999999999999999886666666777777777
Q ss_pred CChHHHHHHHHH
Q 000322 1346 GRHDFAAELMDR 1357 (1670)
Q Consensus 1346 en~d~Ai~Lc~~ 1357 (1670)
.+..+|..+..+
T Consensus 87 ~d~~~A~~~F~k 98 (186)
T PF06552_consen 87 PDTAEAEEYFEK 98 (186)
T ss_dssp --HHHHHHHHHH
T ss_pred CChHHHHHHHHH
Confidence 777777777766
No 253
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=63.06 E-value=92 Score=32.77 Aligned_cols=100 Identities=12% Similarity=0.189 Sum_probs=68.2
Q ss_pred HHHHHHHhCC---CCHHHHHHHHHHHHhC----CCCchHHHHHHHHHhhCCCCHH---------HHHHHHhcCCCcccch
Q 000322 1038 LLSRALEADP---TSEILWITYLLIFYSN----TNSVGKDDMFSYSVKHNEGSYA---------LWLMYINSRTPLNHRL 1101 (1670)
Q Consensus 1038 LLsrALEINP---tSaeaWy~yl~lY~~~----~~~eea~emlekAVelnP~NY~---------LwlmYInsr~slddrl 1101 (1670)
.|...|+... +--.+|+.|..-..+. +.......+++++++.-.++.. +|..|++.-
T Consensus 7 ~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~------- 79 (126)
T PF08311_consen 7 EFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS------- 79 (126)
T ss_dssp HHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB-------
T ss_pred HHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc-------
Confidence 3444444444 3456777776654432 3455577899999866544322 999999988
Q ss_pred hhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHH
Q 000322 1102 DAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRI 1153 (1670)
Q Consensus 1102 ~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti 1153 (1670)
+.+.++|..|.+..=+. .+-..+...+.++...|++++|-.++
T Consensus 80 ---~~~~~if~~l~~~~IG~------~~A~fY~~wA~~le~~~~~~~A~~I~ 122 (126)
T PF08311_consen 80 ---SDPREIFKFLYSKGIGT------KLALFYEEWAEFLEKRGNFKKADEIY 122 (126)
T ss_dssp ---SHHHHHHHHHHHHTTST------TBHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ---cCHHHHHHHHHHcCccH------HHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 48999998888865122 23667788899999999999998844
No 254
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=61.62 E-value=1.5e+02 Score=37.16 Aligned_cols=167 Identities=13% Similarity=0.093 Sum_probs=99.7
Q ss_pred cccccccccchhhhhhhhhc------cccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCH-----HHHHHH
Q 000322 988 NRQSSFFRSRNGVLNKLKQV------ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSE-----ILWITY 1056 (1670)
Q Consensus 988 ~~~~rYF~~~~d~i~~le~~------~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSa-----eaWy~y 1056 (1670)
.+..+|=.+..--..+|.-. ----+.++++|..+= ....+.+++.+=.-||+.--+.+ -+..-+
T Consensus 54 s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e-----~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~ 128 (518)
T KOG1941|consen 54 SEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNE-----KLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSM 128 (518)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhhhHHHHHHHHhcCCCCCcccccchhhhhH
Confidence 56666655444434433322 222245555553321 22334677777777888766666 122223
Q ss_pred HHHHHhCCCCchHHHHHHHHHhhCCCCHH----------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCC-CCcchh
Q 000322 1057 LLIFYSNTNSVGKDDMFSYSVKHNEGSYA----------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASD-GDEMHA 1125 (1670)
Q Consensus 1057 l~lY~~~~~~eea~emlekAVelnP~NY~----------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~-~Dr~~~ 1125 (1670)
+..+..++.-+..++.||+|.+++-.+.+ |..+|...+ +|++|+-+.++++.-.. -...+.
T Consensus 129 ~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~--------D~~Kal~f~~kA~~lv~s~~l~d~ 200 (518)
T KOG1941|consen 129 GNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK--------DYEKALFFPCKAAELVNSYGLKDW 200 (518)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH--------hhhHHhhhhHhHHHHHHhcCcCch
Confidence 44444555556688999999988755544 777888777 99999999998876320 011112
Q ss_pred hhhh-HHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcc
Q 000322 1126 SACI-LDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKL 1184 (1670)
Q Consensus 1126 Sa~i-LDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~ 1184 (1670)
+++- -=+++.|.=-|.+.|+...|-+ . ..| .+++-|..+|+-
T Consensus 201 ~~kyr~~~lyhmaValR~~G~LgdA~e----~-------C~E------a~klal~~Gdra 243 (518)
T KOG1941|consen 201 SLKYRAMSLYHMAVALRLLGRLGDAME----C-------CEE------AMKLALQHGDRA 243 (518)
T ss_pred hHHHHHHHHHHHHHHHHHhcccccHHH----H-------HHH------HHHHHHHhCChH
Confidence 2211 2245666667788888887755 1 233 677888899993
No 255
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=61.16 E-value=36 Score=39.84 Aligned_cols=165 Identities=12% Similarity=0.009 Sum_probs=93.8
Q ss_pred hcCHHHHHHHHHHHHHh-CCCchhH----HHHHHHHhhcccCCccHHHHHHHHHhCCCCCc-hHHHHHHHHHHHHHHcCC
Q 000322 1274 LNGLECSMNLLEKYIKL-YPSCLEL----VLMKARLQKHDFGDLSSVGFEEALIKWPKGVP-GIQCIWNQYVEYALQNGR 1347 (1670)
Q Consensus 1274 LEDse~A~~LfdklLk~-~P~d~eL----~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~-g~~caW~QLIq~al~~en 1347 (1670)
.|+.+..+....++++. .|.+... .|..+| |+....-|..|..+..+.-+... +- -...+++.... ++=
T Consensus 14 ~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvay---Kn~i~~~R~s~R~i~sie~ke~~~~~-~~~~~~~~~yr-~ki 88 (244)
T smart00101 14 AERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAY---KNVIGARRASWRIISSIEQKEESRGN-EDHVASIKEYR-GKI 88 (244)
T ss_pred hcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHH---hhhhcccHHHHHHHhHHHHhhhccCc-hHHHHHHHHHH-HHH
Confidence 67888888888888887 4444433 666666 43233445777777766555321 11 11223333333 223
Q ss_pred hHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHH---HHHHhhhcC---
Q 000322 1348 HDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNL---SLHRLLQND--- 1421 (1670)
Q Consensus 1348 ~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD---~L~q~Lqg~--- 1421 (1670)
.++...+|.. .++++++..-|-.. ++. .-=|| .-+.|| -+.....|.
T Consensus 89 e~EL~~iC~e--------------il~lid~~Lip~~~--~~e-skVFy----------~KmKGDYyRYlaE~~~~~e~~ 141 (244)
T smart00101 89 ETELSKICDG--------------ILKLLESHLIPSAS--AAE-SKVFY----------LKMKGDYHRYLAEFKTGAERK 141 (244)
T ss_pred HHHHHHHHHH--------------HHHHHHHhCccccC--cHH-HHHHH----------HHHHHHHHHHHHHHcCcHHHH
Confidence 4566777744 55555544333110 100 00122 134555 222222333
Q ss_pred --HHHHHHHHHHHHhhc-----c-CCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHH
Q 000322 1422 --WNEARLAIDAALKAA-----A-SEHFKHCVREHAMLLLINESEPKEGAPISWQLKLL 1472 (1670)
Q Consensus 1422 --~~EAfaAYDKALkan-----p-~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~~~KtV 1472 (1670)
.++|..||++|+... | +-...+...||++|+-.--.+-.+|.++.. +++
T Consensus 142 ~~~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk--~af 198 (244)
T smart00101 142 EAAENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAK--QAF 198 (244)
T ss_pred HHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH--HHH
Confidence 568999999999753 3 233467889999999877677788888777 555
No 256
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=59.97 E-value=18 Score=36.00 Aligned_cols=48 Identities=15% Similarity=0.090 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCC
Q 000322 1035 ALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG 1082 (1670)
Q Consensus 1035 ALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~ 1082 (1670)
.+.-|...++.||++..+.|.++..+...+..+++.+-|...|+.+++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRD 54 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 345577777778888888888777777777777777777777777754
No 257
>PRK10941 hypothetical protein; Provisional
Probab=59.91 E-value=29 Score=40.95 Aligned_cols=58 Identities=19% Similarity=0.047 Sum_probs=54.0
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH
Q 000322 1028 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1085 (1670)
Q Consensus 1028 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~ 1085 (1670)
..++++.|+.+..+.|.++|+++.-|-.-+.+|.+.+-...+.+-|++-|+++|+.-.
T Consensus 193 ~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 193 EEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 3467899999999999999999999999999999999999999999999999998776
No 258
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=59.81 E-value=9.1 Score=29.51 Aligned_cols=15 Identities=20% Similarity=0.468 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHhCC
Q 000322 1033 KKALSLLSRALEADP 1047 (1670)
Q Consensus 1033 dAALdLLsrALEINP 1047 (1670)
+.|..+|+++++.+|
T Consensus 17 ~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 17 DEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHCc
Confidence 333333333333333
No 259
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=59.49 E-value=1.2e+02 Score=37.67 Aligned_cols=182 Identities=12% Similarity=0.078 Sum_probs=96.2
Q ss_pred hHhHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCchhH-HHHHHHHhh---cccCCccHHHHHHHHHhCCCCCchHH
Q 000322 1261 HCFAVNHIWCMAVLNGLECSMNLLEKYIKL----YPSCLEL-VLMKARLQK---HDFGDLSSVGFEEALIKWPKGVPGIQ 1332 (1670)
Q Consensus 1261 ~~fKLN~IR~lI~LEDse~A~~LfdklLk~----~P~d~eL-~L~AAyL~~---K~m~~~A~svle~AL~~~PkNa~g~~ 1332 (1670)
.+.-++++..|-...|.+..++|.+.+-.. .+....+ .++|--|-. .+-.++|+.++..++.......+=..
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 455567676766677999999999987666 4555566 666666655 22266888999997777766666344
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH--HHHhhhhcccccccchhh----------------hcccC----CCCCCCCCCC
Q 000322 1333 CIWNQYVEYALQNGRHDFAAELMDR--WFHSVWKVQYSQVEISDP----------------LVADM----SHSSPESTST 1390 (1670)
Q Consensus 1333 caW~QLIq~al~~en~d~Ai~Lc~~--ff~gia~~Q~~~deALDa----------------Lrkgn----s~i~~es~s~ 1390 (1670)
|++=..-...|...+......+.+. ||..-+..+.....++++ +++.. .... .....
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg-~kg~~ 299 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLG-RKGSL 299 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHH-hhccc
Confidence 4443344444444333222222222 444444444322111111 11110 0000 00000
Q ss_pred -CCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcH-HHHHHHHHHHHhc
Q 000322 1391 -SDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHF-KHCVREHAMLLLI 1454 (1670)
Q Consensus 1391 -~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~-i~cLNNYAYFLS~ 1454 (1670)
-..|+. |. +-+ .=...|.|+.++|..|++++++.+|+.++ .-++.|.--|..+
T Consensus 300 ~~~~dYW-------d~--ATl--~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~ni~Li~~~ 354 (374)
T PF13281_consen 300 EKMQDYW-------DV--ATL--LEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLENIKLIRHF 354 (374)
T ss_pred cccccHH-------HH--HHH--HHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHH
Confidence 112211 11 112 22234589999999999999999997643 3344444444443
No 260
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.53 E-value=32 Score=42.23 Aligned_cols=79 Identities=19% Similarity=0.100 Sum_probs=53.1
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC-CchHHHHHHHH------HhhCCCCHH-HHHHHHhcCCCcccc
Q 000322 1029 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN-SVGKDDMFSYS------VKHNEGSYA-LWLMYINSRTPLNHR 1100 (1670)
Q Consensus 1029 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~-~eea~emlekA------VelnP~NY~-LwlmYInsr~slddr 1100 (1670)
.|-|+.|-..-.++|+|||++.=+-...+++.--.+. ++++.-|+++- -=+...||| .+++||...
T Consensus 188 ~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~a------ 261 (491)
T KOG2610|consen 188 CGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGA------ 261 (491)
T ss_pred hccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhccc------
Confidence 3568999999999999999976554444444321111 33444454432 234457899 778888887
Q ss_pred hhhHHHHHHHHHHhh
Q 000322 1101 LDAYDAALSVLCRCA 1115 (1670)
Q Consensus 1101 l~~YdkAI~aLe~la 1115 (1670)
.|+.|+++|.+..
T Consensus 262 --eye~aleIyD~ei 274 (491)
T KOG2610|consen 262 --EYEKALEIYDREI 274 (491)
T ss_pred --chhHHHHHHHHHH
Confidence 9999999997643
No 261
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=58.28 E-value=1.1e+02 Score=33.72 Aligned_cols=84 Identities=13% Similarity=-0.010 Sum_probs=65.3
Q ss_pred hcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHH
Q 000322 1274 LNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAA 1352 (1670)
Q Consensus 1274 LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai 1352 (1670)
-++.+.|+++|.+.+.++|+.+.. -=-+.-+..++-+++|..-+++||++.-+-..-.+.++-|-.-.+.-.|+-|.|.
T Consensus 56 ~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR 135 (175)
T KOG4555|consen 56 AGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAAR 135 (175)
T ss_pred ccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHH
Confidence 459999999999999999999998 3344444555558999999999999987777766667766666677777877776
Q ss_pred HHHHH
Q 000322 1353 ELMDR 1357 (1670)
Q Consensus 1353 ~Lc~~ 1357 (1670)
.-.+.
T Consensus 136 ~DFe~ 140 (175)
T KOG4555|consen 136 ADFEA 140 (175)
T ss_pred HhHHH
Confidence 65544
No 262
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=58.22 E-value=1.7e+02 Score=38.80 Aligned_cols=99 Identities=19% Similarity=0.125 Sum_probs=59.6
Q ss_pred HHHHHHhCCCchhH-HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 000322 1284 LEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSV 1362 (1670)
Q Consensus 1284 fdklLk~~P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gi 1362 (1670)
++-.-++.-.+.+- .++++|+..++-+--|-..|.++ -+. -|++++-++.++|++|-+|+++
T Consensus 736 idI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~----gD~--------ksiVqlHve~~~W~eAFalAe~----- 798 (1081)
T KOG1538|consen 736 IDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKM----GDL--------KSLVQLHVETQRWDEAFALAEK----- 798 (1081)
T ss_pred HHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHh----ccH--------HHHhhheeecccchHhHhhhhh-----
Confidence 34444555555554 77888887776444444454443 122 2568888888899988888743
Q ss_pred hhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhcc
Q 000322 1363 WKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAA 1437 (1670)
Q Consensus 1363 a~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp 1437 (1670)
-|+++.|+| -.-+.-|-+ ..+++||..||-||=...-
T Consensus 799 -------------------------hPe~~~dVy-----------~pyaqwLAE--~DrFeEAqkAfhkAGr~~E 835 (1081)
T KOG1538|consen 799 -------------------------HPEFKDDVY-----------MPYAQWLAE--NDRFEEAQKAFHKAGRQRE 835 (1081)
T ss_pred -------------------------Ccccccccc-----------chHHHHhhh--hhhHHHHHHHHHHhcchHH
Confidence 245566766 222222333 4578888888888754433
No 263
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=56.72 E-value=26 Score=40.13 Aligned_cols=72 Identities=22% Similarity=0.194 Sum_probs=50.7
Q ss_pred ccccccchhhhh------hhhhc--cccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCC----HHHHHHHHH
Q 000322 991 SSFFRSRNGVLN------KLKQV--ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS----EILWITYLL 1058 (1670)
Q Consensus 991 ~rYF~~~~d~i~------~le~~--~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtS----aeaWy~yl~ 1058 (1670)
+=|.|++.++.. ++|.. +.+.++-..+|--|+..+. ++|+.+|-++|+..+.+ +++..-|+.
T Consensus 113 lYy~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~------~Kt~~ll~~~L~l~~~~~~~n~eil~sLas 186 (203)
T PF11207_consen 113 LYYHWSRFGDQEALRRFLQLEGTPELETAELQYALATYYTKRDP------EKTIQLLLRALELSNPDDNFNPEILKSLAS 186 (203)
T ss_pred HHHHhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCH------HHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 335567766533 55554 3566788888888887765 78888888888887665 788888888
Q ss_pred HHHhCCCCch
Q 000322 1059 IFYSNTNSVG 1068 (1670)
Q Consensus 1059 lY~~~~~~ee 1068 (1670)
+|++.++.+.
T Consensus 187 ~~~~~~~~e~ 196 (203)
T PF11207_consen 187 IYQKLKNYEQ 196 (203)
T ss_pred HHHHhcchhh
Confidence 8877776443
No 264
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=55.44 E-value=48 Score=43.81 Aligned_cols=184 Identities=19% Similarity=0.173 Sum_probs=108.3
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccc--ccccchhhhcccCCCCCCCCCCCCCc
Q 000322 1316 GFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQY--SQVEISDPLVADMSHSSPESTSTSDP 1393 (1670)
Q Consensus 1316 vle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~--~~deALDaLrkgns~i~~es~s~~vS 1393 (1670)
.|.+.++.-|+-.. .|..+.+++++.++.- |.++.|..+..+.+ .-.+.+++-+.....+ ...-.
T Consensus 465 afles~~~~~da~a----mw~~laelale~~nl~----iaercfaai~dvak~r~lhd~~eiadeas~~~-----ggdgt 531 (1636)
T KOG3616|consen 465 AFLESLEMGPDAEA----MWIRLAELALEAGNLF----IAERCFAAIGDVAKARFLHDILEIADEASIEI-----GGDGT 531 (1636)
T ss_pred HHHHhhccCccHHH----HHHHHHHHHHHhccch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-----CCCCc
Confidence 45666777787777 8999999999998864 44556777766665 2233333333221111 11236
Q ss_pred ccccccccchhhHHHHHHH-------HHHHhhhcCHHHHHHHHHHHHhhcc-------C--CcHHHHHHHHHHHHhcCCC
Q 000322 1394 EFSVSNRNQMDVMFGYLNL-------SLHRLLQNDWNEARLAIDAALKAAA-------S--EHFKHCVREHAMLLLINES 1457 (1670)
Q Consensus 1394 Dfy~~~~~q~d~~fa~LGD-------~L~q~Lqg~~~EAfaAYDKALkanp-------~--N~~i~cLNNYAYFLS~e~~ 1457 (1670)
||| ++-+|.++|+- +... ++..+||.-.|..--+|+- . ..+...-+-|.-.|+-.+.
T Consensus 532 ~fy-----kvra~lail~kkfk~ae~ifle--qn~te~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~q 604 (1636)
T KOG3616|consen 532 DFY-----KVRAMLAILEKKFKEAEMIFLE--QNATEEAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQ 604 (1636)
T ss_pred hHH-----HHHHHHHHHHhhhhHHHHHHHh--cccHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCc
Confidence 899 99999999987 4444 7888889887755444431 1 2245666778878877776
Q ss_pred CCCcccc---hhhhHHHHHHHHhh------hcccccccc-cchhhhccccchhhHHHHhhhcCCC-----CCChh---hH
Q 000322 1458 EPKEGAP---ISWQLKLLNSYLDR------ARSLPYLKL-LPRQFINNIERPRLQQLIDNLLSPV-----SSDFS---LV 1519 (1670)
Q Consensus 1458 dL~KAeq---MS~~~KtVsTYLDT------AWILf~~~~-lARiYI~~i~k~rv~~liDqaL~~~-----S~dss---~~ 1519 (1670)
+-+.||- -...+-.|.-||.. +....-... ++-.=| |+++-+.+++.. .+-+. +.
T Consensus 605 d~ka~elk~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~i-------l~~ia~alik~elydkagdlfeki~d~ 677 (1636)
T KOG3616|consen 605 DEKAAELKESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEI-------LEHIAAALIKGELYDKAGDLFEKIHDF 677 (1636)
T ss_pred hhhhhhhccccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHH-------HHHHHHHHHhhHHHHhhhhHHHHhhCH
Confidence 5554432 22334555667764 122222222 333333 566556555551 21122 77
Q ss_pred HHHHhhc
Q 000322 1520 NLVLEVC 1526 (1670)
Q Consensus 1520 nkALE~W 1526 (1670)
+||||++
T Consensus 678 dkale~f 684 (1636)
T KOG3616|consen 678 DKALECF 684 (1636)
T ss_pred HHHHHHH
Confidence 8899977
No 265
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=54.08 E-value=17 Score=27.97 Aligned_cols=28 Identities=25% Similarity=0.600 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000322 1131 DLFLQMLQCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1131 DILL~LvqLY~qSGnydKAI~ti~rLEq 1158 (1670)
|.++.+..+|...|++++|+..+.++..
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6789999999999999999999988874
No 266
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=53.37 E-value=76 Score=36.53 Aligned_cols=124 Identities=15% Similarity=0.168 Sum_probs=76.3
Q ss_pred hccccHHHHHHHHHHHhc--ccccchhh------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 000322 1006 QVELSNEQCVEMALLILN--QDANKLEG------MKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSV 1077 (1670)
Q Consensus 1006 ~~~~d~qlWLelAl~~Ln--q~~n~~g~------ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAV 1077 (1670)
....+-..||++|-++=. +++-+..+ --..+.-|..-+...++=--+||+-.+. ++..|+.-|..+
T Consensus 59 ~~le~Y~kCielAa~Iq~i~~~e~k~~R~~a~~~s~~~l~~L~~~tk~S~dP~llYy~Wsr~-----~d~~A~~~fL~~- 132 (203)
T PF11207_consen 59 EALEKYSKCIELAAQIQHIKQKERKTDRFRALLHSYQELERLQEETKNSQDPYLLYYHWSRF-----GDQEALRRFLQL- 132 (203)
T ss_pred HHHHHHHHHHHHHhcCeeechHhHHHHHHHHHHHHHHHHHHHHHHHccCCCccHHHHHhhcc-----CcHHHHHHHHHH-
Confidence 334455889999966422 22222222 2334444555555444444444443332 466777777766
Q ss_pred hhCCCCHH------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCC-cchhhhhhHHHHHHHHHHHHHhcCHHHH
Q 000322 1078 KHNEGSYA------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD-EMHASACILDLFLQMLQCFCMSGNTEKA 1149 (1670)
Q Consensus 1078 elnP~NY~------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~D-r~~~Sa~iLDILL~LvqLY~qSGnydKA 1149 (1670)
+-.|.=.. |+-+|++.. =++|+.+|-+..+-.+++ . .=.|+|+.|+-+|...|++++|
T Consensus 133 E~~~~l~t~elq~aLAtyY~krD---------~~Kt~~ll~~~L~l~~~~~~-----~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 133 EGTPELETAELQYALATYYTKRD---------PEKTIQLLLRALELSNPDDN-----FNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cCCCCCCCHHHHHHHHHHHHccC---------HHHHHHHHHHHHHhcCCCCC-----CCHHHHHHHHHHHHHhcchhhh
Confidence 44443222 999999654 489999998877765344 1 1179999999999999999988
No 267
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=50.58 E-value=78 Score=37.26 Aligned_cols=97 Identities=16% Similarity=0.071 Sum_probs=69.9
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH------HHHHHHhcCCCcccch
Q 000322 1028 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA------LWLMYINSRTPLNHRL 1101 (1670)
Q Consensus 1028 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~------LwlmYInsr~slddrl 1101 (1670)
+.|=.+-|..=|..+|.|+|.=++++-.+..|+..-++-..+.+.|..-.+++|.+.. ++++|-.
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~g--------- 147 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG--------- 147 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecC---------
Confidence 4566778888899999999999999988888888888888899999999999997654 4444432
Q ss_pred hhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHH
Q 000322 1102 DAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCF 1140 (1670)
Q Consensus 1102 ~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY 1140 (1670)
.|.-|.+-+-..+...+.|. . --+||++...-
T Consensus 148 -R~~LAq~d~~~fYQ~D~~DP-f-----R~LWLYl~E~k 179 (297)
T COG4785 148 -RYKLAQDDLLAFYQDDPNDP-F-----RSLWLYLNEQK 179 (297)
T ss_pred -chHhhHHHHHHHHhcCCCCh-H-----HHHHHHHHHhh
Confidence 23556555555555554442 1 24566665543
No 268
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=50.53 E-value=53 Score=37.48 Aligned_cols=70 Identities=17% Similarity=0.054 Sum_probs=49.2
Q ss_pred HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000322 1086 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1086 LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1158 (1670)
+||+|-..+..-.++. -+.+|+..|++.+...+... ...-=.-+++.+..|+...|++++|+.-+.+|..
T Consensus 124 lAWlyR~~~~~~~E~~-fl~~Al~~y~~a~~~e~~~~--~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 124 LAWLYRDLGDEENEKR-FLRKALEFYEEAYENEDFPI--EGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHhhccCCHHHHHH-HHHHHHHHHHHHHHhCcCCC--CCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 7788887774333333 67889999988887652210 0000023667788999999999999999999996
No 269
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=50.45 E-value=2e+02 Score=34.25 Aligned_cols=133 Identities=17% Similarity=0.204 Sum_probs=92.7
Q ss_pred ccccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHH---HHHHHhCCC--------CchHHHHHHH
Q 000322 1007 VELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITY---LLIFYSNTN--------SVGKDDMFSY 1075 (1670)
Q Consensus 1007 ~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~y---l~lY~~~~~--------~eea~emlek 1075 (1670)
+|...|.-|++|+-+... ++|+.|+....+=+..+|+++.+=|.+ +..+...-. -..+..-|..
T Consensus 67 s~~~~qa~l~l~yA~Yk~-----~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~ 141 (254)
T COG4105 67 SPYSEQAQLDLAYAYYKN-----GEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKE 141 (254)
T ss_pred CcccHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHH
Confidence 344457778888777665 457999999999999999987654332 333332221 1124556666
Q ss_pred HHhhCCCCHH---------------------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHH
Q 000322 1076 SVKHNEGSYA---------------------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFL 1134 (1670)
Q Consensus 1076 AVelnP~NY~---------------------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL 1134 (1670)
-|+--|++-. ++.+|++-+ +|..|+.=++++.+.+ ++ ...+.|.|.
T Consensus 142 ~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~--------~~~AA~nR~~~v~e~y-~~----t~~~~eaL~ 208 (254)
T COG4105 142 LVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRG--------AYVAAINRFEEVLENY-PD----TSAVREALA 208 (254)
T ss_pred HHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc--------ChHHHHHHHHHHHhcc-cc----ccchHHHHH
Confidence 6766776643 788899888 8888888888888877 33 235688999
Q ss_pred HHHHHHHHhcCHHHHHHHHHhhcc
Q 000322 1135 QMLQCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1135 ~LvqLY~qSGnydKAI~ti~rLEq 1158 (1670)
.|...|.+-|-.+.|-. ..++..
T Consensus 209 ~l~eaY~~lgl~~~a~~-~~~vl~ 231 (254)
T COG4105 209 RLEEAYYALGLTDEAKK-TAKVLG 231 (254)
T ss_pred HHHHHHHHhCChHHHHH-HHHHHH
Confidence 99999999998887744 444443
No 270
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.35 E-value=2.1e+02 Score=36.99 Aligned_cols=158 Identities=15% Similarity=0.052 Sum_probs=95.3
Q ss_pred chhhHhHHHHHHHHHH-hcCHHHHHHHHHHH---HHhCCCchhH------HHHHHHHhhcccCCccHHHHHHHHHhCCCC
Q 000322 1258 RSAHCFAVNHIWCMAV-LNGLECSMNLLEKY---IKLYPSCLEL------VLMKARLQKHDFGDLSSVGFEEALIKWPKG 1327 (1670)
Q Consensus 1258 kt~~~fKLN~IR~lI~-LEDse~A~~Lfdkl---Lk~~P~d~eL------~L~AAyL~~K~m~~~A~svle~AL~~~PkN 1327 (1670)
+++.-+-+.+...+.. ...++.|++-++++ ++.-|+--++ +|.-.|++..+-...+.+.+.+|+++.-..
T Consensus 43 ~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~ 122 (629)
T KOG2300|consen 43 LVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSV 122 (629)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC
Confidence 3444444444444444 44788888777664 5666765444 555556676654556779999999998765
Q ss_pred CchHHHHH-HHHHHHHHHcCChHHHHHHHHH-----------HHHhhhhc---cc-----ccccchhhhccc----CCCC
Q 000322 1328 VPGIQCIW-NQYVEYALQNGRHDFAAELMDR-----------WFHSVWKV---QY-----SQVEISDPLVAD----MSHS 1383 (1670)
Q Consensus 1328 a~g~~caW-~QLIq~al~~en~d~Ai~Lc~~-----------ff~gia~~---Q~-----~~deALDaLrkg----ns~i 1383 (1670)
+ +|.|.. .||++...-+.++..|++++.- ||.-+... +. +..+...++... ..-+
T Consensus 123 p-~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~ 201 (629)
T KOG2300|consen 123 P-YWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNIS 201 (629)
T ss_pred c-hhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccC
Confidence 5 788876 4999988888899999887543 44332221 11 222222222222 2222
Q ss_pred CCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHH
Q 000322 1384 SPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLA 1428 (1670)
Q Consensus 1384 ~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg~~~EAfaA 1428 (1670)
++....+..-+|| --+-++||. +.|+..-+.-+
T Consensus 202 sdk~~~E~LkvFy-----------l~lql~yy~-~~gq~rt~k~~ 234 (629)
T KOG2300|consen 202 SDKTQKEMLKVFY-----------LVLQLSYYL-LPGQVRTVKPA 234 (629)
T ss_pred CChHHHHHHHHHH-----------HHHHHHHHh-cccchhhhHHH
Confidence 2333455777777 777788887 56666555543
No 271
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=48.30 E-value=43 Score=36.66 Aligned_cols=67 Identities=16% Similarity=0.161 Sum_probs=55.3
Q ss_pred HHHHHHhcCCCcccchhhHHHHHHHHHHhhh-cCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCC
Q 000322 1086 LWLMYINSRTPLNHRLDAYDAALSVLCRCAS-ASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSN 1164 (1670)
Q Consensus 1086 LwlmYInsr~slddrl~~YdkAI~aLe~las-~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~ 1164 (1670)
|+|-.+.++.+.+ --+-|.+||..++ ..+.++ .|-+++|+==+..-|+|++++.-+++|+. .+..
T Consensus 38 lAwaLV~S~~~~d-----v~~GI~iLe~l~~~~~~~~r-------Re~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~ 103 (149)
T KOG3364|consen 38 LAWALVRSRDTED-----VQEGIVILEDLLKSAHPERR-------RECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPN 103 (149)
T ss_pred HHHHHHcccchHH-----HHHhHHHHHHHhhhcCcccc-------hhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCC
Confidence 8899999994444 3679999999997 554556 78999999999999999999999999998 6655
Q ss_pred Cc
Q 000322 1165 DR 1166 (1670)
Q Consensus 1165 sE 1166 (1670)
|.
T Consensus 104 n~ 105 (149)
T KOG3364|consen 104 NR 105 (149)
T ss_pred cH
Confidence 54
No 272
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.04 E-value=7.7e+02 Score=32.05 Aligned_cols=129 Identities=13% Similarity=0.125 Sum_probs=87.6
Q ss_pred cccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHhCCCCc-----hHHHHHHHHH
Q 000322 1008 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALE-----ADPTSEILWITYLLIFYSNTNSV-----GKDDMFSYSV 1077 (1670)
Q Consensus 1008 ~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALE-----INPtSaeaWy~yl~lY~~~~~~e-----ea~emlekAV 1077 (1670)
.-+.+.-..++.-++....-...+.+.|+..|+.+.+ +.-..+.+.+.|+.+|++..... .+..+|.+|+
T Consensus 241 ~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA 320 (552)
T KOG1550|consen 241 LGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAA 320 (552)
T ss_pred hcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHH
Confidence 3344555555566666644445778999999999988 11225557889999998875433 3889999999
Q ss_pred hhCCCCHH--HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHH----HhcCHHHHHH
Q 000322 1078 KHNEGSYA--LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFC----MSGNTEKAIQ 1151 (1670)
Q Consensus 1078 elnP~NY~--LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~----qSGnydKAI~ 1151 (1670)
++...+-. |+.+|..-. +..++.+|...|..++..- . .+..+.+..||. ...+..+|..
T Consensus 321 ~~g~~~a~~~lg~~~~~g~-----~~~d~~~A~~yy~~Aa~~G--~--------~~A~~~la~~y~~G~gv~r~~~~A~~ 385 (552)
T KOG1550|consen 321 ELGNPDAQYLLGVLYETGT-----KERDYRRAFEYYSLAAKAG--H--------ILAIYRLALCYELGLGVERNLELAFA 385 (552)
T ss_pred hcCCchHHHHHHHHHHcCC-----ccccHHHHHHHHHHHHHcC--C--------hHHHHHHHHHHHhCCCcCCCHHHHHH
Confidence 88765544 777776655 2236789999997766543 3 456666666665 4567888877
No 273
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=44.84 E-value=4.9e+02 Score=34.20 Aligned_cols=86 Identities=19% Similarity=0.307 Sum_probs=57.5
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhhcccCCccHHHHHHHHHhC-CCC-CchHHHHHHHHHHHHHH
Q 000322 1268 IWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKW-PKG-VPGIQCIWNQYVEYALQ 1344 (1670)
Q Consensus 1268 IR~lI~LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~~~-PkN-a~g~~caW~QLIq~al~ 1344 (1670)
++||+.+ ..++--.+..++++.|=.|+.. --.+.++++.+ ..++.+.|.+|+..- |+. -.++-..|-+|+.+.
T Consensus 106 ~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEkik-~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i-- 181 (711)
T COG1747 106 LQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEKIK-KSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI-- 181 (711)
T ss_pred HHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHHhc-hhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--
Confidence 5566665 6677778888888888888888 55556666654 667777777777543 322 226777887777543
Q ss_pred cCChHHHHHHHHH
Q 000322 1345 NGRHDFAAELMDR 1357 (1670)
Q Consensus 1345 ~en~d~Ai~Lc~~ 1357 (1670)
.++.|...++..+
T Consensus 182 ~dD~D~fl~l~~k 194 (711)
T COG1747 182 GDDKDFFLRLQKK 194 (711)
T ss_pred cccHHHHHHHHHH
Confidence 4466666666655
No 274
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=44.79 E-value=84 Score=34.77 Aligned_cols=60 Identities=15% Similarity=0.164 Sum_probs=49.7
Q ss_pred HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000322 1086 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1086 LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1158 (1670)
++.+|.+-+ .++.|+..|.++.... . ..-.+.|++|.++.+....|++..+..-|.+.+.
T Consensus 42 l~~~~~~~G--------d~~~A~k~y~~~~~~~-~----~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 42 LADHYCKIG--------DLEEALKAYSRARDYC-T----SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHhh--------hHHHHHHHHHHHhhhc-C----CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 888999988 8899999998864432 1 2346799999999999999999999988887776
No 275
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=44.64 E-value=1.6e+02 Score=35.49 Aligned_cols=57 Identities=21% Similarity=0.248 Sum_probs=49.6
Q ss_pred HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000322 1086 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1086 LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1158 (1670)
++-.|+..+ .|+.+++.+.++....|-+ +.++.+||..|.+.|+..+||..+.++..
T Consensus 159 lae~~~~~~--------~~~~~~~~l~~Li~~dp~~--------E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 159 LAEALIACG--------RADAVIEHLERLIELDPYD--------EPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHhcc--------cHHHHHHHHHHHHhcCccc--------hHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 556666666 7899999999999988544 89999999999999999999999999986
No 276
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=44.45 E-value=2.3e+02 Score=35.07 Aligned_cols=130 Identities=15% Similarity=0.071 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHH--hCCCCchHHHHHHHHHhhCCC-CHHH
Q 000322 1012 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEI--LWITYLLIFY--SNTNSVGKDDMFSYSVKHNEG-SYAL 1086 (1670)
Q Consensus 1012 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSae--aWy~yl~lY~--~~~~~eea~emlekAVelnP~-NY~L 1086 (1670)
+.=++.|...++. ++|.+|..+|..+++-=|.... .+..+...|. .+..-.+|.+.|++..+..-. .-.-
T Consensus 132 ~~~~~~a~~l~n~-----~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~ 206 (379)
T PF09670_consen 132 DREWRRAKELFNR-----YDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQER 206 (379)
T ss_pred HHHHHHHHHHHhc-----CCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHH
Confidence 3445556655555 4689999999999986344443 5555555554 333455677777777655311 0001
Q ss_pred HHHHHhcCCCcccchhhHHHHHHHHHHhhhcCC--CC-cchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000322 1087 WLMYINSRTPLNHRLDAYDAALSVLCRCASASD--GD-EMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1087 wlmYInsr~slddrl~~YdkAI~aLe~las~~~--~D-r~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1158 (1670)
|... ...+.+..+........ .. .+....+++.-|+..++==...|+|+.|+.+++|++.
T Consensus 207 ~~l~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lE 269 (379)
T PF09670_consen 207 EGLK------------ELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALE 269 (379)
T ss_pred HHHH------------HHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 1111 11222333322222110 01 0112455555566666655678899999999999986
No 277
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.42 E-value=75 Score=41.37 Aligned_cols=133 Identities=17% Similarity=0.173 Sum_probs=82.3
Q ss_pred CCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHh
Q 000322 1064 TNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMS 1143 (1670)
Q Consensus 1064 ~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qS 1143 (1670)
...++++.+|..||+--+.|-.+ .+| ..+ |=- .|.||+|.+...++
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~----------------------~lL----~ss-PYH-------vdsLLqva~~~r~q 297 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVL----------------------ILL----ISS-PYH-------VDSLLQVADIFRFQ 297 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCccee----------------------eee----ccC-Ccc-------hhHHHHHHHHHHHh
Confidence 45667888999998766555432 111 111 222 89999999999999
Q ss_pred cCHHHHHHHHHhhc----ccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCC
Q 000322 1144 GNTEKAIQRISRLL----IPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWP 1219 (1670)
Q Consensus 1144 GnydKAI~ti~rLE----q~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGn~y~q~e~~KEAf~I~W~ 1219 (1670)
|+.+.|-.-|.|-+ .....--++ .+..--.-|.-...| .-|+..||.| --+.+.||..-|+..
T Consensus 298 gD~e~aadLieR~Ly~~d~a~hp~F~~--~sg~cRL~y~~~eNR------~FyL~l~r~m--~~l~~RGC~rTA~E~--- 364 (665)
T KOG2422|consen 298 GDREMAADLIERGLYVFDRALHPNFIP--FSGNCRLPYIYPENR------QFYLALFRYM--QSLAQRGCWRTALEW--- 364 (665)
T ss_pred cchhhHHHHHHHHHHHHHHHhcccccc--ccccccCcccchhhH------HHHHHHHHHH--HHHHhcCChHHHHHH---
Confidence 99887766443321 100000011 111111233333444 2346667766 356778899999888
Q ss_pred CcccchhhHH-HHHHHHHHHHHHHhh
Q 000322 1220 PVQLEDDEKQ-RAIKLIEMAVNSVEL 1244 (1670)
Q Consensus 1220 y~~vlkdEPd-nalAL~smA~dYY~~ 1244 (1670)
+.-+++-||. +++++... +|+|..
T Consensus 365 cKlllsLdp~eDPl~~l~~-ID~~AL 389 (665)
T KOG2422|consen 365 CKLLLSLDPSEDPLGILYL-IDIYAL 389 (665)
T ss_pred HHHHhhcCCcCCchhHHHH-HHHHHH
Confidence 8888888998 88888887 788874
No 278
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=43.88 E-value=42 Score=30.85 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=27.8
Q ss_pred HHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHH
Q 000322 1409 YLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCV 1445 (1670)
Q Consensus 1409 ~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cL 1445 (1670)
+|..++|. .|++++|....|.+|+..|+| .++.
T Consensus 6 ~lAig~yk--l~~Y~~A~~~~~~lL~~eP~N--~Qa~ 38 (53)
T PF14853_consen 6 YLAIGHYK--LGEYEKARRYCDALLEIEPDN--RQAQ 38 (53)
T ss_dssp HHHHHHHH--TT-HHHHHHHHHHHHHHTTS---HHHH
T ss_pred HHHHHHHH--hhhHHHHHHHHHHHHhhCCCc--HHHH
Confidence 67888999 999999999999999999999 5554
No 279
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.26 E-value=3.5e+02 Score=32.95 Aligned_cols=92 Identities=21% Similarity=0.226 Sum_probs=66.2
Q ss_pred CHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhccc---
Q 000322 1083 SYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIP--- 1159 (1670)
Q Consensus 1083 NY~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~--- 1159 (1670)
+..+-.-|-+++.-..+.. ++|+..+.....-. +.+ .-|-.-.|-+|++.+...|+|+++..++..|+.-
T Consensus 25 dVDlENQYYnsK~l~e~~p---~~Al~sF~kVlelE-gEK---geWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkS 97 (440)
T KOG1464|consen 25 DVDLENQYYNSKGLKEDEP---KEALSSFQKVLELE-GEK---GEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKS 97 (440)
T ss_pred CcchHhhhhccccccccCH---HHHHHHHHHHHhcc-ccc---chhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 3347777888876666544 89999998777665 454 4467778899999999999999999999888862
Q ss_pred ccC-CCCcccchHHHHHHhhccCCc
Q 000322 1160 ATG-SNDRHSLFLSDILTCLTISDK 1183 (1670)
Q Consensus 1160 Al~-g~sE~~lSLsKi~~YLt~sDR 1183 (1670)
|+. .-+ ..|+..|..|...+..
T Consensus 98 AVTrNyS--EKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 98 AVTRNYS--EKSINSILDYISTSKN 120 (440)
T ss_pred HHhcccc--HHHHHHHHHHHhhhhh
Confidence 221 223 3467777777775544
No 280
>PF12854 PPR_1: PPR repeat
Probab=43.04 E-value=33 Score=28.24 Aligned_cols=27 Identities=11% Similarity=0.481 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhh
Q 000322 1130 LDLFLQMLQCFCMSGNTEKAIQRISRL 1156 (1670)
Q Consensus 1130 LDILL~LvqLY~qSGnydKAI~ti~rL 1156 (1670)
.-.+-.|++.||..|++++|++.++++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 457889999999999999999966554
No 281
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=42.92 E-value=1.9e+02 Score=29.85 Aligned_cols=43 Identities=9% Similarity=0.151 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHH
Q 000322 1031 GMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFS 1074 (1670)
Q Consensus 1031 ~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emle 1074 (1670)
....++..|.+++..++.++.+...|+.+|.... +....++++
T Consensus 22 ~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~ 64 (140)
T smart00299 22 LLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLD 64 (140)
T ss_pred cHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHH
Confidence 3577888899999998888888888888887654 334445555
No 282
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=42.44 E-value=73 Score=38.28 Aligned_cols=71 Identities=15% Similarity=0.337 Sum_probs=54.3
Q ss_pred HHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCch-HHHHHHHHHhhCCCCHHHHHH
Q 000322 1015 VEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVG-KDDMFSYSVKHNEGSYALWLM 1089 (1670)
Q Consensus 1015 LelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~ee-a~emlekAVelnP~NY~Lwlm 1089 (1670)
+.++.-++..++. -.-||.+..-||.+||.+=.+|-.-..+...++.+.- -.+++...++-+|.||.+|..
T Consensus 46 m~YfRAI~~~~E~----S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHH 117 (318)
T KOG0530|consen 46 MDYFRAIIAKNEK----SPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHH 117 (318)
T ss_pred HHHHHHHHhcccc----CHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHH
Confidence 4444556666552 1889999999999999999999887776655554322 458899999999999999864
No 283
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=41.58 E-value=1.2e+02 Score=36.81 Aligned_cols=92 Identities=13% Similarity=0.044 Sum_probs=59.2
Q ss_pred hHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhcc-c-CCccHHHHHHHHHhCCCCCchHHHHHHHH
Q 000322 1261 HCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHD-F-GDLSSVGFEEALIKWPKGVPGIQCIWNQY 1338 (1670)
Q Consensus 1261 ~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~-m-~~~A~svle~AL~~~PkNa~g~~caW~QL 1338 (1670)
...++-+.++|+..++++.|..+++.+=.....+.-..| -++|.... + ...-...++..+..+|++.. ++.+|
T Consensus 168 ~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l-~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~----aa~~l 242 (304)
T COG3118 168 SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGL-QAQIELLEQAAATPEIQDLQRRLAADPDDVE----AALAL 242 (304)
T ss_pred chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHhCCCCHH----HHHHH
Confidence 445566678888877888887766654333333322232 23222211 2 33445678888888888888 88888
Q ss_pred HHHHHHcCChHHHHHHHHH
Q 000322 1339 VEYALQNGRHDFAAELMDR 1357 (1670)
Q Consensus 1339 Iq~al~~en~d~Ai~Lc~~ 1357 (1670)
.......|+.+.|..++-.
T Consensus 243 A~~~~~~g~~e~Ale~Ll~ 261 (304)
T COG3118 243 ADQLHLVGRNEAALEHLLA 261 (304)
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 8888888888888877744
No 284
>TIGR01987 HI0074 nucleotidyltransferase substrate binding protein, HI0074 family. The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins. It forms a complex with HI0073, encoded by the adjacent gene and containing a nucleotidyltransferase nucleotide binding domain (pfam01909).
Probab=41.53 E-value=2.1e+02 Score=30.56 Aligned_cols=86 Identities=20% Similarity=0.282 Sum_probs=60.8
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHH----------------HHHHHHHHHHhCCC----CchHHHHHHHHHhhCC-CCHHHH
Q 000322 1029 LEGMKKALSLLSRALEADPTSEI----------------LWITYLLIFYSNTN----SVGKDDMFSYSVKHNE-GSYALW 1087 (1670)
Q Consensus 1029 ~g~ydAALdLLsrALEINPtSae----------------aWy~yl~lY~~~~~----~eea~emlekAVelnP-~NY~Lw 1087 (1670)
.++|..||..|+.+++.+|.+.. +|-.+-.+....|- ...-.+.++.|.+..= ++-..|
T Consensus 2 ~~nf~kAl~~L~~a~~~~~~~~~~~~~g~IqrFE~t~ELaWK~lK~~L~~~G~~~~~~~spr~~ir~A~~~glI~d~~~W 81 (123)
T TIGR01987 2 FESFEQALMQLSDANWFDLTNDITIIDGAIQKFEFTFELAWKLMKRYLAQEGINDIGAYSPKDVLKEAFRAGLIGDESLW 81 (123)
T ss_pred HHHHHHHHHHHHHHHhcCccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHcCCcCCHHHH
Confidence 36789999999999999888776 66665554443332 2334688888876653 456699
Q ss_pred HHHHhcCCCcccchhhHHHHHHHHHHhh
Q 000322 1088 LMYINSRTPLNHRLDAYDAALSVLCRCA 1115 (1670)
Q Consensus 1088 lmYInsr~slddrl~~YdkAI~aLe~la 1115 (1670)
.-+++.|..... .|..+.|.+++....
T Consensus 82 ~~ml~~RN~tsH-tYde~~a~~i~~~I~ 108 (123)
T TIGR01987 82 IAMLDDRNITSH-TYDQEKAREIYAQIR 108 (123)
T ss_pred HHHHHHhCcccc-cCCHHHHHHHHHHHH
Confidence 999999977765 335566888886654
No 285
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.51 E-value=2.8e+02 Score=38.05 Aligned_cols=52 Identities=15% Similarity=0.358 Sum_probs=41.8
Q ss_pred HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhh
Q 000322 1086 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRL 1156 (1670)
Q Consensus 1086 LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rL 1156 (1670)
+|..|+..+ .|++|++. ++..|+ ++.-|++.-+++|.+.++|..|-+.+...
T Consensus 364 vWk~yLd~g--------~y~kAL~~-----ar~~p~------~le~Vl~~qAdf~f~~k~y~~AA~~yA~t 415 (911)
T KOG2034|consen 364 VWKTYLDKG--------EFDKALEI-----ARTRPD------ALETVLLKQADFLFQDKEYLRAAEIYAET 415 (911)
T ss_pred HHHHHHhcc--------hHHHHHHh-----ccCCHH------HHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 999999999 99999983 333244 45778999999999999999997755443
No 286
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=41.01 E-value=4.7e+02 Score=30.12 Aligned_cols=124 Identities=17% Similarity=0.141 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC----CCchHHHHHHHHHhh-CCCC---
Q 000322 1012 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNT----NSVGKDDMFSYSVKH-NEGS--- 1083 (1670)
Q Consensus 1012 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~----~~eea~emlekAVel-nP~N--- 1083 (1670)
.....++..+.....- ..+...|+.+|. ...+...+.+-+.|+.+|.... ...++...|++|++. ++..
T Consensus 74 ~a~~~l~~~y~~g~gv-~~~~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~ 150 (292)
T COG0790 74 AALALLGQMYGAGKGV-SRDKTKAADWYR--CAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALA 150 (292)
T ss_pred HHHHHHHHHHHhccCc-cccHHHHHHHHH--HHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHH
Confidence 6777777777777542 345799999999 6677788999999999987633 455688999999998 4443
Q ss_pred -HHHHHHHHhcCCCcccchhhHH--HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHH----HHhcCHHHHHH
Q 000322 1084 -YALWLMYINSRTPLNHRLDAYD--AALSVLCRCASASDGDEMHASACILDLFLQMLQCF----CMSGNTEKAIQ 1151 (1670)
Q Consensus 1084 -Y~LwlmYInsr~slddrl~~Yd--kAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY----~qSGnydKAI~ 1151 (1670)
+.|.++|.+-. .. .-..++ .|+..|.+++.... .+..+.+-.+| ....|+.+|+.
T Consensus 151 ~~~l~~~~~~g~--~~-~~~~~~~~~A~~~~~~aa~~~~----------~~a~~~lg~~y~~G~Gv~~d~~~A~~ 212 (292)
T COG0790 151 MYRLGLAYLSGL--QA-LAVAYDDKKALYLYRKAAELGN----------PDAQLLLGRMYEKGLGVPRDLKKAFR 212 (292)
T ss_pred HHHHHHHHHcCh--hh-hcccHHHHhHHHHHHHHHHhcC----------HHHHHHHHHHHHcCCCCCcCHHHHHH
Confidence 44889998864 11 112344 89999988877652 22333333444 44567888877
No 287
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=40.89 E-value=1.7e+02 Score=31.43 Aligned_cols=72 Identities=17% Similarity=0.209 Sum_probs=48.8
Q ss_pred CchHHHHHHHHHhhCCCCH---------HHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHH
Q 000322 1066 SVGKDDMFSYSVKHNEGSY---------ALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQM 1136 (1670)
Q Consensus 1066 ~eea~emlekAVelnP~NY---------~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~L 1136 (1670)
..+....++++++.--+.. .+|..|++.- ++++++|.-|.+..=+.+ +--.+-..
T Consensus 42 ~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~----------~dp~~if~~L~~~~IG~~------~AlfYe~~ 105 (125)
T smart00777 42 ESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC----------DEPRELFQFLYSKGIGTK------LALFYEEW 105 (125)
T ss_pred hhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHCCcchh------hHHHHHHH
Confidence 3446677777775422221 1999999765 667888888888762222 23445567
Q ss_pred HHHHHHhcCHHHHHHHH
Q 000322 1137 LQCFCMSGNTEKAIQRI 1153 (1670)
Q Consensus 1137 vqLY~qSGnydKAI~ti 1153 (1670)
+.++-..|++.+|-+++
T Consensus 106 A~~lE~~g~~~~A~~iy 122 (125)
T smart00777 106 AQLLEAAGRYKKADEVY 122 (125)
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 88999999999998844
No 288
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.07 E-value=1.1e+02 Score=35.39 Aligned_cols=75 Identities=11% Similarity=0.019 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Q 000322 1263 FAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYA 1342 (1670)
Q Consensus 1263 fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~a 1342 (1670)
.++.+-|.++..+..+.|+.+++..........--.|.+.-|..++..++|+..|++|+...+..+. -|++++-
T Consensus 128 ~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~------~~~lqmK 201 (207)
T COG2976 128 AALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPAA------REILQMK 201 (207)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHH------HHHHHhH
Confidence 3445445555577889999998888776655554577777776666688999999999999966665 2455554
Q ss_pred H
Q 000322 1343 L 1343 (1670)
Q Consensus 1343 l 1343 (1670)
+
T Consensus 202 L 202 (207)
T COG2976 202 L 202 (207)
T ss_pred H
Confidence 4
No 289
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=39.52 E-value=32 Score=26.07 Aligned_cols=27 Identities=15% Similarity=0.411 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000322 1132 LFLQMLQCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1132 ILL~LvqLY~qSGnydKAI~ti~rLEq 1158 (1670)
+|..|++.|++.|++++|.+.+.++..
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 367899999999999999998888774
No 290
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=39.45 E-value=4.8e+02 Score=30.88 Aligned_cols=49 Identities=12% Similarity=0.136 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHH
Q 000322 1131 DLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY 1192 (1670)
Q Consensus 1131 DILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iY 1192 (1670)
+-+++|++|.-+.|+|+.|+..+..+-. ..+..+ |+..+|.++.++|+.
T Consensus 2 e~~v~~Aklaeq~eRyddm~~~mk~~~~--~~~~~e-----------Lt~EERnLLSvayKn 50 (244)
T smart00101 2 EENVYMAKLAEQAERYEEMVEFMEKVAK--TVDSEE-----------LTVEERNLLSVAYKN 50 (244)
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHh--hcCCcc-----------CCHHHHHHHHHHHhh
Confidence 3578899999999999999997777653 211112 567888888888877
No 291
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=38.70 E-value=4e+02 Score=31.34 Aligned_cols=160 Identities=16% Similarity=0.090 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCH--HHHHHHHHhhcccccCCCCcccchHHHHHHhhcc
Q 000322 1103 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNT--EKAIQRISRLLIPATGSNDRHSLFLSDILTCLTI 1180 (1670)
Q Consensus 1103 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGny--dKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~ 1180 (1670)
.|++|+++|.+.+... -+..+-.+..|+-++|++.|...+.- +..+.+|-.|.... ....| . ..+.
T Consensus 5 ky~eAidLL~~Ga~~l--l~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~-~~~~p-~--------r~~f 72 (260)
T PF04190_consen 5 KYDEAIDLLYSGALIL--LKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLF-PPEEP-E--------RKKF 72 (260)
T ss_dssp -HHHHHHHHHHHHHHH--HHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS--TT-T-T--------HHHH
T ss_pred cHHHHHHHHHHHHHHH--HHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-CCCcc-h--------HHHH
Confidence 7999999997776654 11224567789999999999998642 22334555555322 11222 1 1112
Q ss_pred CCcchhhHH---HHH-HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhh
Q 000322 1181 SDKLIFWVC---CVY-LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETN 1256 (1670)
Q Consensus 1181 sDR~~AWL~---~iY-llrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ndesla~~~~ 1256 (1670)
-++++.|-. +.+ +...+.+.|..|-..+...+|-.- -++.++|+.....+-+ ...+.. +.++
T Consensus 73 i~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H-----fl~~~~~~~~~~~~ll-~~~~~~--~~~~------ 138 (260)
T PF04190_consen 73 IKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERH-----FLLGTDPSAFAYVMLL-EEWSTK--GYPS------ 138 (260)
T ss_dssp HHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHH-----HHTS-HHHHHHHHHHH-HHHHHH--TSS-------
T ss_pred HHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHH-----HHhcCChhHHHHHHHH-HHHHHh--cCCc------
Confidence 233344662 122 666677788888777655555220 0234555554442111 222221 1111
Q ss_pred hchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 000322 1257 LRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKL 1290 (1670)
Q Consensus 1257 ~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~ 1290 (1670)
-...|-...+-+|..+++..-|..+|+.+++.
T Consensus 139 --e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 139 --EADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ---HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred --chhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 11233334466666678899999999999887
No 292
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=38.30 E-value=47 Score=39.54 Aligned_cols=56 Identities=20% Similarity=0.083 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH
Q 000322 1030 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1085 (1670)
Q Consensus 1030 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~ 1085 (1670)
++++.|+..-++.|..||.++.-|---+.+|.+.+-...+.+-++..|+++|+.-.
T Consensus 195 ~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 195 LQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred hchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 45699999999999999999999999999999999888899999999999997655
No 293
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.62 E-value=9e+02 Score=30.12 Aligned_cols=110 Identities=16% Similarity=0.122 Sum_probs=69.0
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHH----hhCCCCHHHHHHHHhcCCCcccchhh
Q 000322 1028 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSV----KHNEGSYALWLMYINSRTPLNHRLDA 1103 (1670)
Q Consensus 1028 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAV----elnP~NY~LwlmYInsr~slddrl~~ 1103 (1670)
+.|+|++|+.-|+-||+.--=.+-+-|.++...+++++...++++....| +--|. | +-+-..++
T Consensus 156 kegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPE---l-----gIGm~teg---- 223 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPE---L-----GIGMTTEG---- 223 (459)
T ss_pred ccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCc---c-----Cccceecc----
Confidence 44789999999999999999999999999999888888777776665554 33331 0 11101111
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000322 1104 YDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1104 YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq 1158 (1670)
+.+ ..-.+ +-..+.|+ |.+.|..-+-.|-+.||++.|-..|-.+-+
T Consensus 224 ----iDv---rsvgN-t~~lh~Sa-l~eAfNLKaAIeyq~~n~eAA~eaLtDmPP 269 (459)
T KOG4340|consen 224 ----IDV---RSVGN-TLVLHQSA-LVEAFNLKAAIEYQLRNYEAAQEALTDMPP 269 (459)
T ss_pred ----Cch---hcccc-hHHHHHHH-HHHHhhhhhhhhhhcccHHHHHHHhhcCCC
Confidence 110 01122 23344454 344555556677788888888777766655
No 294
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=37.46 E-value=42 Score=33.10 Aligned_cols=57 Identities=9% Similarity=0.003 Sum_probs=41.5
Q ss_pred hhhHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH
Q 000322 1029 LEGMKKALSLLSRALEADPTS---------EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1085 (1670)
Q Consensus 1029 ~g~ydAALdLLsrALEINPtS---------aeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~ 1085 (1670)
.++|..|++.|.++++.-... ..++..++.+....|..+++.+.++.||+++-.+-+
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D 76 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGD 76 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC
Confidence 366778877777666654332 456677788888999999999999999987754433
No 295
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=37.39 E-value=9e+02 Score=30.01 Aligned_cols=130 Identities=18% Similarity=0.206 Sum_probs=75.7
Q ss_pred HHHHHHHHhcccccchhhHHHHHHHHHHHHHh----CC----CCHHHHHHHHHHHHhCCCCchHHHHHHHHHhh----C-
Q 000322 1014 CVEMALLILNQDANKLEGMKKALSLLSRALEA----DP----TSEILWITYLLIFYSNTNSVGKDDMFSYSVKH----N- 1080 (1670)
Q Consensus 1014 WLelAl~~Lnq~~n~~g~ydAALdLLsrALEI----NP----tSaeaWy~yl~lY~~~~~~eea~emlekAVel----n- 1080 (1670)
.|++|....+.+ +++.|..+|.+.|.- +- .-.....+++.+|...+......+.....-++ .
T Consensus 6 sle~a~~~v~~~-----~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk 80 (421)
T COG5159 6 SLELANNAVKSN-----DIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTK 80 (421)
T ss_pred hHHHHHHhhhhh-----hHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcc
Confidence 377777777664 468999999999866 11 23456778899998888644433322221111 0
Q ss_pred CCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhh
Q 000322 1081 EGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRL 1156 (1670)
Q Consensus 1081 P~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rL 1156 (1670)
|...- |.-++-...-+|++.+.+++.-|+.- +|+.+-|-=+++=-.++.||-++|.|..||.-|+-+
T Consensus 81 ~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA---------~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 81 PKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWA---------DREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 00000 34444444444444443333333322 222233333566667889999999999999988777
Q ss_pred c
Q 000322 1157 L 1157 (1670)
Q Consensus 1157 E 1157 (1670)
.
T Consensus 152 l 152 (421)
T COG5159 152 L 152 (421)
T ss_pred H
Confidence 6
No 296
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=37.37 E-value=3.4e+02 Score=32.96 Aligned_cols=91 Identities=12% Similarity=0.111 Sum_probs=60.8
Q ss_pred ccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHH----HHHhhCCCCHHHHHHHHhcCCCccc
Q 000322 1024 QDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFS----YSVKHNEGSYALWLMYINSRTPLNH 1099 (1670)
Q Consensus 1024 q~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emle----kAVelnP~NY~LwlmYInsr~sldd 1099 (1670)
....+.+.+-.|..+|.++|..+|.+..+-..+..+|...|-...+.+.|. |-|+++-=.|.+..-+.... .+..
T Consensus 191 ~~~~~~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~~~~r~~~~~-~~~~ 269 (365)
T PF09797_consen 191 SKTKDSEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHLILDRLSTLG-PFKS 269 (365)
T ss_pred hccCCHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHHHHHHHhccC-cccc
Confidence 444567889999999999999999999999999999999998888877775 34455433332211111111 2222
Q ss_pred ch-hhHHHHHHHHHHhh
Q 000322 1100 RL-DAYDAALSVLCRCA 1115 (1670)
Q Consensus 1100 rl-~~YdkAI~aLe~la 1115 (1670)
.. ..++.++.+|....
T Consensus 270 ~~~~~~~~~~~fy~~~~ 286 (365)
T PF09797_consen 270 APENLLENALKFYDNSE 286 (365)
T ss_pred cchHHHHHHHHHHHHHH
Confidence 22 45666777774443
No 297
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=37.03 E-value=1.1e+02 Score=30.73 Aligned_cols=59 Identities=17% Similarity=0.050 Sum_probs=45.1
Q ss_pred hhhhhccccHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhCCC
Q 000322 1002 NKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS--EILWITYLLIFYSNTN 1065 (1670)
Q Consensus 1002 ~~le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtS--aeaWy~yl~lY~~~~~ 1065 (1670)
..+++.|.|.+..+.+|..++.. |+++.|++.|-.++..+|+. ..+--.++.+|--.+.
T Consensus 13 ~~~a~~P~D~~ar~~lA~~~~~~-----g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 13 AALAANPDDLDARYALADALLAA-----GDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHSTT-HHHHHHHHHHHHHT-----T-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 46778899999999999999988 45799999999999999875 6666666666655554
No 298
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=36.19 E-value=70 Score=37.22 Aligned_cols=61 Identities=15% Similarity=0.057 Sum_probs=55.2
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHH
Q 000322 1027 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALW 1087 (1670)
Q Consensus 1027 n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~Lw 1087 (1670)
.+.+....|+.--++||+++|+..-++..-+.+|.++...+++.+-|.+..+.+|.+..+-
T Consensus 145 iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear 205 (271)
T KOG4234|consen 145 IKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAR 205 (271)
T ss_pred HHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHH
Confidence 4567789999999999999999999999999999999989999999999999999887643
No 299
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=35.86 E-value=55 Score=24.98 Aligned_cols=27 Identities=19% Similarity=0.501 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000322 1132 LFLQMLQCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1132 ILL~LvqLY~qSGnydKAI~ti~rLEq 1158 (1670)
.+-.|+..|++.|++++|++.+.++..
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 366899999999999999999988874
No 300
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=35.80 E-value=2.5e+02 Score=35.79 Aligned_cols=212 Identities=17% Similarity=0.121 Sum_probs=111.3
Q ss_pred CHHHHHHHHHHHHhCCC-------------CchHHHHHHHHHhhCCCCHHH----------HHHHHhcCCCcccchhhHH
Q 000322 1049 SEILWITYLLIFYSNTN-------------SVGKDDMFSYSVKHNEGSYAL----------WLMYINSRTPLNHRLDAYD 1105 (1670)
Q Consensus 1049 SaeaWy~yl~lY~~~~~-------------~eea~emlekAVelnP~NY~L----------wlmYInsr~slddrl~~Yd 1105 (1670)
-+-++|.++.+|..++. ..++.+.|+.||++--.|-.| +-.|=+.+.+.= -+-.|+
T Consensus 134 e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyY-lLGdf~ 212 (639)
T KOG1130|consen 134 ESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYY-LLGDFD 212 (639)
T ss_pred hhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceee-eeccHH
Confidence 46789999999997775 345778999999887655541 112222222110 011688
Q ss_pred HHHHHHHH---hhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCC
Q 000322 1106 AALSVLCR---CASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISD 1182 (1670)
Q Consensus 1106 kAI~aLe~---las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sD 1182 (1670)
.||.+-.. ++..+ +|+ |.---..--+-.++.+-|+++-||+-+.+-...|++=.+ + . ...+.|...+.
T Consensus 213 ~ai~~H~~RL~ia~ef-GDr----AaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~-r--~-vEAQscYSLgN 283 (639)
T KOG1130|consen 213 QAIHFHKLRLEIAQEF-GDR----AAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGN-R--T-VEAQSCYSLGN 283 (639)
T ss_pred HHHHHHHHHHHHHHHh-hhH----HHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcc-h--h-HHHHHHHHhhh
Confidence 88877643 45556 564 112233445678899999999999976655543333111 1 0 01222222222
Q ss_pred cchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhH
Q 000322 1183 KLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHC 1262 (1670)
Q Consensus 1183 R~~AWL~~iYllrYrvLPGn~y~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~ 1262 (1670)
. ..| +-+|++-. -|.+. -++| .+-+.+--..+.+-.++| ..|+. .+. .+-+-.
T Consensus 284 t--ytl----l~e~~kAI--~Yh~r-----HLaI----AqeL~DriGe~RacwSLg-na~~a-lg~--------h~kAl~ 336 (639)
T KOG1130|consen 284 T--YTL----LKEVQKAI--TYHQR-----HLAI----AQELEDRIGELRACWSLG-NAFNA-LGE--------HRKALY 336 (639)
T ss_pred H--HHH----HHHHHHHH--HHHHH-----HHHH----HHHHHHhhhhHHHHHHHH-HHHHh-hhh--------HHHHHH
Confidence 2 111 11121110 01110 0111 111222224555666664 44444 332 244455
Q ss_pred hHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCchhH
Q 000322 1263 FAVNHIWCMAV----LNGLECSMNLLEKYIKLYPSCLEL 1297 (1670)
Q Consensus 1263 fKLN~IR~lI~----LEDse~A~~LfdklLk~~P~d~eL 1297 (1670)
|...|++.-.. .+.++...+|.+..|.+-..+..+
T Consensus 337 fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds~~ 375 (639)
T KOG1130|consen 337 FAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDSLV 375 (639)
T ss_pred HHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcccC
Confidence 66666666443 336788889999999888777644
No 301
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=35.78 E-value=2.5e+02 Score=34.09 Aligned_cols=82 Identities=12% Similarity=0.116 Sum_probs=42.4
Q ss_pred HHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHHHHHHhhhcccccccccchhhhccccchhhHHHHhhh
Q 000322 1429 IDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDRARSLPYLKLLPRQFINNIERPRLQQLIDNL 1508 (1670)
Q Consensus 1429 YDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~~~KtVsTYLDTAWILf~~~~lARiYI~~i~k~rv~~liDqa 1508 (1670)
--+.+...|.| +-.||=-.-++-.+. .|...-.+.. .+.+.+ --++..-|..-.|| +--+.+++
T Consensus 210 t~~~I~~vP~N--eSaWnYL~G~l~~d~-gl~s~s~vv~---f~~~l~---~~~~~~sP~lla~l-------~d~~~e~~ 273 (318)
T KOG0530|consen 210 TKDKILLVPNN--ESAWNYLKGLLELDS-GLSSDSKVVS---FVENLY---LQLPKRSPFLLAFL-------LDLYAEDA 273 (318)
T ss_pred HHHHHHhCCCC--ccHHHHHHHHHHhcc-CCcCCchHHH---HHHHHh---hccCCCChhHHHHH-------HHHHHHHH
Confidence 34567889999 999986666665522 2554444333 112211 01122222223333 22222777
Q ss_pred cCCCCCChhhHHHHHhhc
Q 000322 1509 LSPVSSDFSLVNLVLEVC 1526 (1670)
Q Consensus 1509 L~~~S~dss~~nkALE~W 1526 (1670)
|.+.++..+..++|++.|
T Consensus 274 l~~~~~~~~~a~~a~~ly 291 (318)
T KOG0530|consen 274 LAYKSSAEELARKAVKLY 291 (318)
T ss_pred hhccccchHHHHHHHHHH
Confidence 777655555566676666
No 302
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=35.58 E-value=93 Score=32.90 Aligned_cols=64 Identities=22% Similarity=0.268 Sum_probs=45.4
Q ss_pred HHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHH---HHHHHHHhCCCCc-----------hHHHHHHHHHhhCCC
Q 000322 1017 MALLILNQDANKLEGMKKALSLLSRALEADPTSEILWI---TYLLIFYSNTNSV-----------GKDDMFSYSVKHNEG 1082 (1670)
Q Consensus 1017 lAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy---~yl~lY~~~~~~e-----------ea~emlekAVelnP~ 1082 (1670)
+|+.++.. |++-+||.+..-.+-.++++..+|. .-+.+|+...... ...+.|.+|+.++|+
T Consensus 2 ~A~~~~~r-----GnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~ 76 (111)
T PF04781_consen 2 KAKDYFAR-----GNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD 76 (111)
T ss_pred hHHHHHHc-----cCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh
Confidence 44555444 6779999999999999999996653 3366776444311 245888999999998
Q ss_pred CHH
Q 000322 1083 SYA 1085 (1670)
Q Consensus 1083 NY~ 1085 (1670)
+-.
T Consensus 77 ~A~ 79 (111)
T PF04781_consen 77 SAH 79 (111)
T ss_pred HHH
Confidence 833
No 303
>KOG4147 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.40 E-value=26 Score=36.73 Aligned_cols=42 Identities=29% Similarity=0.412 Sum_probs=32.0
Q ss_pred ccCCcCccccCCCcccccccccccccCCCCCCCCCCCCCceEEEecCCC
Q 000322 14 VDIQPRNTTQSNSLKSFEQNRVTFKSNTPGWFPSSGKNDNLVISFSDDD 62 (1670)
Q Consensus 14 ~~~~~r~~~q~~~~k~~~~n~~~~~s~~~~~~~~~g~~~nlvi~fsdd~ 62 (1670)
.|||.|+|.-|--+--|+-=.+=++ |+-..-+||||+|-+||
T Consensus 45 ~~Iq~~~sl~pfRn~kfDtLKIy~~-------Ah~sKT~nLvinldhDd 86 (127)
T KOG4147|consen 45 QDIQLRTSLPPFRNYKFDTLKIYHQ-------AHKSKTNNLVINLDHDD 86 (127)
T ss_pred HhcccCCCCCccccccccceeeehh-------hhhcccceEEEeccCCc
Confidence 4799999998877667765444333 46678899999999887
No 304
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=34.96 E-value=48 Score=26.58 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHhhc
Q 000322 1408 GYLNLSLHRLLQNDWNEARLAIDAALKAA 1436 (1670)
Q Consensus 1408 a~LGD~L~q~Lqg~~~EAfaAYDKALkan 1436 (1670)
.-|+.+|+. .|+++||...|++|+..-
T Consensus 6 ~~la~~~~~--~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 6 NNLANAYRA--QGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHH--CT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--hhhcchhhHHHHHHHHHH
Confidence 456777777 999999999999999653
No 305
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.54 E-value=1.3e+03 Score=33.05 Aligned_cols=225 Identities=15% Similarity=0.161 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHH------------HHHhhCCCCHH--HHHHHHhcCC
Q 000322 1030 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFS------------YSVKHNEGSYA--LWLMYINSRT 1095 (1670)
Q Consensus 1030 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emle------------kAVelnP~NY~--LwlmYInsr~ 1095 (1670)
|.++.-+.+|..+|-+-..--..+.+++-+|++.+ ++...+.++ +|++-. --| |--+|.+-.
T Consensus 1293 GyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFwsRvNipKviRA~eqa--hlW~ElvfLY~~y~- 1368 (1666)
T KOG0985|consen 1293 GYFEELISLLEAGLGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSRVNIPKVIRAAEQA--HLWSELVFLYDKYE- 1368 (1666)
T ss_pred CcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhcchHHHHHHHHHH--HHHHHHHHHHHhhh-
Q ss_pred CcccchhhHHHHHHHHHHhhhcCCCCcchhhh-------hhHHHHHHHHHHHH---------------------------
Q 000322 1096 PLNHRLDAYDAALSVLCRCASASDGDEMHASA-------CILDLFLQMLQCFC--------------------------- 1141 (1670)
Q Consensus 1096 slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa-------~iLDILL~LvqLY~--------------------------- 1141 (1670)
.||-|.... |.... .+-.|..| .=+++++..+++|.
T Consensus 1369 -------eyDNAa~tm--m~h~t-eaw~~~~FKdii~kVaNvElyYkAi~FYl~~~P~llnDlL~vL~pRlDh~r~v~~f 1438 (1666)
T KOG0985|consen 1369 -------EYDNAALTM--MEHPT-EAWDHGQFKDIITKVANVELYYKAIQFYLDFHPLLLNDLLTVLSPRLDHTRTVSIF 1438 (1666)
T ss_pred -------hhhHHHHHH--HhCCh-hhhhhhhHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHHHHhcccccCchHHHHHH
Q ss_pred ----------------HhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHH-HHHhhccchHHH
Q 000322 1142 ----------------MSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY-LVIYRKLPDAVL 1204 (1670)
Q Consensus 1142 ----------------qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iY-llrYrvLPGn~y 1204 (1670)
++.|....-+.++.|+ ++-..= +-.-..|-.|-.-..-.+|-=-.+| +++||.+-+-+|
T Consensus 1439 ~K~~~lpLikpyl~~vq~~Nn~avNealn~l~---ieeEDy-~~Lr~sid~~D~FD~i~LAq~lEkH~L~efrriaAyly 1514 (1666)
T KOG0985|consen 1439 SKAGQLPLIKPYLRAVQSLNNKAVNEALNDLL---IEEEDY-QGLRDSIDAYDNFDNIGLAQRLEKHELVEFRRIAAYLY 1514 (1666)
T ss_pred HhcCCCcccHHHHHHHHhcchHHHHHHHHHHh---hhHHHH-HHHHHhhhhhcchhHHHHHHHhhhhhhHHHHHHHHHHH
Q ss_pred hhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhh-----hhchhhHhHHHHHHHHHHhcCHHH
Q 000322 1205 QLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKET-----NLRSAHCFAVNHIWCMAVLNGLEC 1279 (1670)
Q Consensus 1205 ~q~e~~KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ndesla~~~-----~~kt~~~fKLN~IR~lI~LEDse~ 1279 (1670)
-.+++-|.-..+ .---.+..+|+.|-+. .++-+++++. ....-.||.-.+..||-++ +.+-
T Consensus 1515 k~n~rW~qSiel------------~Kkd~lyKDame~Aa~-S~~~~lae~Ll~~F~e~g~~ecFaa~Ly~cYdLl-rpd~ 1580 (1666)
T KOG0985|consen 1515 KGNNRWKQSIEL------------CKKDKLYKDAMETAAE-SRDTELAEELLQYFLEEGKRECFAACLYTCYDLL-RPDV 1580 (1666)
T ss_pred hccchHHHHHHH------------hhhhhHHHHHHHHHHh-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc-ChHH
Q ss_pred HHHHHHH
Q 000322 1280 SMNLLEK 1286 (1670)
Q Consensus 1280 A~~Lfdk 1286 (1670)
++++..+
T Consensus 1581 vlElaW~ 1587 (1666)
T KOG0985|consen 1581 VLELAWR 1587 (1666)
T ss_pred HHHHHHH
No 306
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=33.74 E-value=43 Score=27.52 Aligned_cols=25 Identities=4% Similarity=-0.003 Sum_probs=13.5
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHH
Q 000322 1053 WITYLLIFYSNTNSVGKDDMFSYSV 1077 (1670)
Q Consensus 1053 Wy~yl~lY~~~~~~eea~emlekAV 1077 (1670)
|..++.+|.+.+.-+++.++|++|+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555555555555665533
No 307
>PF13041 PPR_2: PPR repeat family
Probab=33.39 E-value=1e+02 Score=26.66 Aligned_cols=34 Identities=12% Similarity=0.323 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCc
Q 000322 1130 LDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDR 1166 (1670)
Q Consensus 1130 LDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE 1166 (1670)
.-.+-.+++.|++.|++++|++.++.+. ..|..|
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~---~~g~~P 36 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMK---KRGIKP 36 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHH---HcCCCC
Confidence 3467789999999999999999999988 456665
No 308
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=33.19 E-value=1.2e+02 Score=36.48 Aligned_cols=52 Identities=15% Similarity=0.196 Sum_probs=45.9
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 000322 1028 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKH 1079 (1670)
Q Consensus 1028 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVel 1079 (1670)
.-++++++...+.+-++.+|-+..+|+.+...|++.+....+...|+..-++
T Consensus 165 ~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 165 ACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred hcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3466899999999999999999999999999999999988888888877553
No 309
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=32.85 E-value=2.2e+03 Score=33.27 Aligned_cols=82 Identities=16% Similarity=0.101 Sum_probs=57.2
Q ss_pred hhhHHHHHHHHHHHHHhCC---CCHHHHHHHHH-HHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhH
Q 000322 1029 LEGMKKALSLLSRALEADP---TSEILWITYLL-IFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAY 1104 (1670)
Q Consensus 1029 ~g~ydAALdLLsrALEINP---tSaeaWy~yl~-lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~Y 1104 (1670)
.+-|.-|+..|.++ .+.+ +--+.+|.++. +|...+++.++.-.... ..+.|.=+.--++--.++ .+
T Consensus 1396 c~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~sl~~qil~~e~~g--------~~ 1465 (2382)
T KOG0890|consen 1396 CKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADPSLYQQILEHEASG--------NW 1465 (2382)
T ss_pred hHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCccHHHHHHHHHhhc--------cH
Confidence 35567777777776 3333 34567777777 88888887776554443 455665555667777777 78
Q ss_pred HHHHHHHHHhhhcCCCC
Q 000322 1105 DAALSVLCRCASASDGD 1121 (1670)
Q Consensus 1105 dkAI~aLe~las~~~~D 1121 (1670)
..|+..|+++.... |+
T Consensus 1466 ~da~~Cye~~~q~~-p~ 1481 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD-PD 1481 (2382)
T ss_pred HHHHHHHHHhhcCC-Cc
Confidence 99999999998877 55
No 310
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=30.89 E-value=8.6e+02 Score=28.66 Aligned_cols=131 Identities=12% Similarity=-0.078 Sum_probs=89.7
Q ss_pred CchHHHHHHHHHhhCCCCHH---HHHHHHhcCCCcccchhhHHHHHHHHHHhhhc-CCCCcchhhhhhHHHHHHHHHHHH
Q 000322 1066 SVGKDDMFSYSVKHNEGSYA---LWLMYINSRTPLNHRLDAYDAALSVLCRCASA-SDGDEMHASACILDLFLQMLQCFC 1141 (1670)
Q Consensus 1066 ~eea~emlekAVelnP~NY~---LwlmYInsr~slddrl~~YdkAI~aLe~las~-~~~Dr~~~Sa~iLDILL~LvqLY~ 1141 (1670)
++-...-..++++-+|-+-. |+.-....+ .|.+|...|++..+. +-.| --++|-+.+-..
T Consensus 72 P~R~~Rea~~~~~~ApTvqnr~rLa~al~elG--------r~~EA~~hy~qalsG~fA~d--------~a~lLglA~Aqf 135 (251)
T COG4700 72 PERHLREATEELAIAPTVQNRYRLANALAELG--------RYHEAVPHYQQALSGIFAHD--------AAMLLGLAQAQF 135 (251)
T ss_pred hhHHHHHHHHHHhhchhHHHHHHHHHHHHHhh--------hhhhhHHHHHHHhccccCCC--------HHHHHHHHHHHH
Confidence 33333444455666665443 777778888 899999999887764 4345 678999999999
Q ss_pred HhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchh-----hHHHHH-HHHhhccchHHHhhhhhhhhh
Q 000322 1142 MSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIF-----WVCCVY-LVIYRKLPDAVLQLLECEKEL 1213 (1670)
Q Consensus 1142 qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~A-----WL~~iY-llrYrvLPGn~y~q~e~~KEA 1213 (1670)
..++...|..+|+.|......+-+| +-.|-=-+.|-+.+.-.-| |...-| ...=+...+.|+...|+..|+
T Consensus 136 a~~~~A~a~~tLe~l~e~~pa~r~p-d~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 136 AIQEFAAAQQTLEDLMEYNPAFRSP-DGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREA 212 (251)
T ss_pred hhccHHHHHHHHHHHhhcCCccCCC-CchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHH
Confidence 9999999999999999866666666 5555555666666655433 777776 333344455556555554444
No 311
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=30.52 E-value=7.8e+02 Score=28.70 Aligned_cols=177 Identities=13% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhh
Q 000322 1131 DLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECE 1210 (1670)
Q Consensus 1131 DILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGn~y~q~e~~ 1210 (1670)
|-+++|+++.-++|+|+.|+..+..+-. .++. |+..+|.++-++++..+.=+.
T Consensus 2 e~li~~Aklaeq~eRy~dmv~~mk~~~~-----~~~e----------Lt~eERnLlsvayKn~i~~~R------------ 54 (236)
T PF00244_consen 2 EELIYLAKLAEQAERYDDMVEYMKQLIE-----MNPE----------LTEEERNLLSVAYKNVIGSRR------------ 54 (236)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHH-----TSS-------------HHHHHHHHHHHHHHHHHHH------------
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHc-----cCCC----------CCHHHHHHHHHHHHhccccch------------
Q ss_pred hhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 000322 1211 KELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKL 1290 (1670)
Q Consensus 1211 KEAf~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~ 1290 (1670)
.....+.+.- ...+.............++...-.-+... ...+++|.+..|-.
T Consensus 55 ------------------~s~R~l~~~e-------~~~~~~~~~~~~~~i~~yk~kie~EL~~~--C~eii~lId~~Lip 107 (236)
T PF00244_consen 55 ------------------ASWRILSSIE-------QKEENKGNEKQVKLIKDYKKKIEDELIDI--CNEIIRLIDKSLIP 107 (236)
T ss_dssp ------------------HHHHHHHHHH-------HHHHTTTTHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHTCHH
T ss_pred ------------------HHHHhhhhHh-------hhhcccchhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhc
Q ss_pred CCCchhHHHHHHHH---------------hhcccCCccHHHHHHHHH-----hCCCCCchHHHHHHHHHHHHHHcCChHH
Q 000322 1291 YPSCLELVLMKARL---------------QKHDFGDLSSVGFEEALI-----KWPKGVPGIQCIWNQYVEYALQNGRHDF 1350 (1670)
Q Consensus 1291 ~P~d~eL~L~AAyL---------------~~K~m~~~A~svle~AL~-----~~PkNa~g~~caW~QLIq~al~~en~d~ 1350 (1670)
...+.+-.++.-.| ..+.+.+.|...|+.|+. +.|.++-..--+=|.-+=+.=-.++.++
T Consensus 108 ~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~ 187 (236)
T PF00244_consen 108 SATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEK 187 (236)
T ss_dssp HS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHH
T ss_pred cccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHH
Q ss_pred HHHHHHHHHHh
Q 000322 1351 AAELMDRWFHS 1361 (1670)
Q Consensus 1351 Ai~Lc~~ff~g 1361 (1670)
|++|+++.|..
T Consensus 188 A~~ia~~afd~ 198 (236)
T PF00244_consen 188 AIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
No 312
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=30.19 E-value=1e+02 Score=41.29 Aligned_cols=81 Identities=11% Similarity=0.047 Sum_probs=52.7
Q ss_pred ccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhh-------hcCHHHHHHHHHHHHhhccCCc
Q 000322 1368 SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLL-------QNDWNEARLAIDAALKAAASEH 1440 (1670)
Q Consensus 1368 ~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~L-------qg~~~EAfaAYDKALkanp~N~ 1440 (1670)
+-..||+++-.. .+.+....+|+| -+.|-+|--++ .+..+-|+.||-+|+..-|.+
T Consensus 258 DRakAL~~~l~l-----ve~eg~vapDm~-----------Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~- 320 (1226)
T KOG4279|consen 258 DRAKALNTVLPL-----VEKEGPVAPDMY-----------CLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE- 320 (1226)
T ss_pred cHHHHHHHHHHH-----HHhcCCCCCcee-----------eeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh-
Confidence 344555554322 223445567888 45666554432 245677899999999999976
Q ss_pred HHHHHHHHHHHHhcCCCCCCcccchhh
Q 000322 1441 FKHCVREHAMLLLINESEPKEGAPISW 1467 (1670)
Q Consensus 1441 ~i~cLNNYAYFLS~e~~dL~KAeqMS~ 1467 (1670)
+.=-|||..|...|.....-++|..
T Consensus 321 --~sGIN~atLL~aaG~~Fens~Elq~ 345 (1226)
T KOG4279|consen 321 --YSGINLATLLRAAGEHFENSLELQQ 345 (1226)
T ss_pred --hccccHHHHHHHhhhhccchHHHHH
Confidence 3335899999988887776666544
No 313
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=30.11 E-value=1.5e+02 Score=34.33 Aligned_cols=62 Identities=21% Similarity=0.281 Sum_probs=48.6
Q ss_pred HHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhh
Q 000322 1085 ALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRL 1156 (1670)
Q Consensus 1085 ~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rL 1156 (1670)
.++..|...+ .|++|+.+|+.+...+-.+. =..=+.+++..+.+++...|+.+..+.+.=.|
T Consensus 183 ~~A~ey~~~g--------~~~~A~~~l~~~~~~yr~eg--W~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLG--------DYDKALKLLEPAASSYRREG--WWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCC--------CHHHHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4888999999 99999999998876552221 23345899999999999999999999866333
No 314
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=29.14 E-value=3.4e+02 Score=26.81 Aligned_cols=82 Identities=21% Similarity=0.268 Sum_probs=54.9
Q ss_pred HHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhc
Q 000322 1341 YALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQN 1420 (1670)
Q Consensus 1341 ~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD~L~q~Lqg 1420 (1670)
.+|+.+|+..|++-+.++|.-......... .. ..-+++|+.+......|
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~----------------------~~---------~~~~all~lA~~~~~~G 55 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSS----------------------NS---------GLAYALLNLAELHRRFG 55 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchh----------------------hH---------HHHHHHHHHHHHHHHhC
Confidence 578899999999999887743211111111 00 11237888866666689
Q ss_pred CHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHh
Q 000322 1421 DWNEARLAIDAALKAAASEHFKHCVREHAMLLL 1453 (1670)
Q Consensus 1421 ~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS 1453 (1670)
..++|..+++.|+.....+.=..||+-....+.
T Consensus 56 ~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~~ 88 (94)
T PF12862_consen 56 HYEEALQALEEAIRLARENGDRRCLAYALSWLA 88 (94)
T ss_pred CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 999999999999999884333677766555443
No 315
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=28.84 E-value=82 Score=26.85 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000322 1032 MKKALSLLSRALEADPTSEILWITYLLI 1059 (1670)
Q Consensus 1032 ydAALdLLsrALEINPtSaeaWy~yl~l 1059 (1670)
+|-|.++|.|.+...|+ +..|..|+.+
T Consensus 3 ~dRAR~IyeR~v~~hp~-~k~WikyAkF 29 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPE-VKNWIKYAKF 29 (32)
T ss_pred HHHHHHHHHHHHHhCCC-chHHHHHHHh
Confidence 68899999999999976 8999999887
No 316
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=28.75 E-value=68 Score=38.08 Aligned_cols=64 Identities=16% Similarity=0.053 Sum_probs=33.6
Q ss_pred ccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH------------HHHhhhhccc-ccccchhhhcc
Q 000322 1312 LSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR------------WFHSVWKVQY-SQVEISDPLVA 1378 (1670)
Q Consensus 1312 ~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~------------ff~gia~~Q~-~~deALDaLrk 1378 (1670)
.|++.|-+||.++|..+.|++-. +..-+.-++|+.+..-|++ ||+|-+-.+. .+++++..|++
T Consensus 28 ~ai~~y~raI~~nP~~~~Y~tnr----alchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 28 DAIDCYSRAICINPTVASYYTNR----ALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hHHHHHHHHHhcCCCcchhhhhH----HHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 45555556666666555544433 3333334455555555554 5555555554 55555555555
Q ss_pred c
Q 000322 1379 D 1379 (1670)
Q Consensus 1379 g 1379 (1670)
+
T Consensus 104 a 104 (284)
T KOG4642|consen 104 A 104 (284)
T ss_pred H
Confidence 5
No 317
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=28.29 E-value=2e+02 Score=36.46 Aligned_cols=111 Identities=18% Similarity=0.238 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhcccc------cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCH
Q 000322 1011 NEQCVEMALLILNQDA------NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY 1084 (1670)
Q Consensus 1011 ~qlWLelAl~~Lnq~~------n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY 1084 (1670)
.+..-++|+....... -+.|+++.|+.+. - .-++++.|-.|+......++-+.|.++|+++ .++
T Consensus 307 ~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a---~--~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~-----~d~ 376 (443)
T PF04053_consen 307 KKGYPELALQFVTDPDHRFELALQLGNLDIALEIA---K--ELDDPEKWKQLGDEALRQGNIELAEECYQKA-----KDF 376 (443)
T ss_dssp HTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHC---C--CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHC-----T-H
T ss_pred HCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHH---H--hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhh-----cCc
Confidence 3556667776666543 2355666664332 2 2348899999999999999766666666665 566
Q ss_pred H-HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHH
Q 000322 1085 A-LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQR 1152 (1670)
Q Consensus 1085 ~-LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~t 1152 (1670)
. |-++|.-.+ .- +.+.-+...+... ++ +...++.+...|++++-++.
T Consensus 377 ~~L~lLy~~~g--------~~-~~L~kl~~~a~~~-~~-----------~n~af~~~~~lgd~~~cv~l 424 (443)
T PF04053_consen 377 SGLLLLYSSTG--------DR-EKLSKLAKIAEER-GD-----------INIAFQAALLLGDVEECVDL 424 (443)
T ss_dssp HHHHHHHHHCT---------H-HHHHHHHHHHHHT-T------------HHHHHHHHHHHT-HHHHHHH
T ss_pred cccHHHHHHhC--------CH-HHHHHHHHHHHHc-cC-----------HHHHHHHHHHcCCHHHHHHH
Confidence 6 878888887 22 3333343444443 33 34455666667777777773
No 318
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=28.27 E-value=1.3e+02 Score=30.28 Aligned_cols=58 Identities=17% Similarity=0.227 Sum_probs=40.5
Q ss_pred HHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 000322 1015 VEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSV 1077 (1670)
Q Consensus 1015 LelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAV 1077 (1670)
|+--+++.+++.+ ++|+....++|+..++.+..|..++.++-...+--.-.+|+..|+
T Consensus 10 ie~GlkLY~~~~~-----~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 10 IEKGLKLYHQNET-----QQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred HHHHHHHhccchH-----HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777665 999999999999999999988887665433322222445666554
No 319
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=27.27 E-value=50 Score=32.80 Aligned_cols=18 Identities=50% Similarity=0.575 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 000322 454 KALKAYRKAQRALIEANA 471 (1670)
Q Consensus 454 ~alkayrkaqraliean~ 471 (1670)
+||.+||||+|-|+|+.+
T Consensus 26 ~Al~~Y~~gi~~l~eg~a 43 (79)
T cd02679 26 QALAHYRKGLRELEEGIA 43 (79)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 499999999999999875
No 320
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=26.85 E-value=2.7e+02 Score=35.06 Aligned_cols=114 Identities=17% Similarity=0.209 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH------------HHHHH-
Q 000322 1030 EGMKKALSLLSRALEADPTSE------ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA------------LWLMY- 1090 (1670)
Q Consensus 1030 g~ydAALdLLsrALEINPtSa------eaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~------------LwlmY- 1090 (1670)
+.++.|+..|+.|+.+--+.. -+++-+..+|-+.+.-+.+.-+..+|.++. .||. |.-|-
T Consensus 136 s~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv-~s~~l~d~~~kyr~~~lyhmaV 214 (518)
T KOG1941|consen 136 SVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELV-NSYGLKDWSLKYRAMSLYHMAV 214 (518)
T ss_pred HHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHH-HhcCcCchhHHHHHHHHHHHHH
Confidence 456777777777776543322 367778889988888888889999999887 6665 23222
Q ss_pred -HhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHH
Q 000322 1091 -INSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRI 1153 (1670)
Q Consensus 1091 -Insr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti 1153 (1670)
++...+|+|....|++|.++=-++ +|+--. .--++.|.+.|.--|+.+.|..++
T Consensus 215 alR~~G~LgdA~e~C~Ea~klal~~-----Gdra~~----arc~~~~aDIyR~~gd~e~af~rY 269 (518)
T KOG1941|consen 215 ALRLLGRLGDAMECCEEAMKLALQH-----GDRALQ----ARCLLCFADIYRSRGDLERAFRRY 269 (518)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHh-----CChHHH----HHHHHHHHHHHHhcccHhHHHHHH
Confidence 344567888888888888765333 453101 123456667777777666655533
No 321
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=26.79 E-value=8.2e+02 Score=32.35 Aligned_cols=126 Identities=13% Similarity=0.122 Sum_probs=87.4
Q ss_pred HHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhh-CC--CCHH---H
Q 000322 1013 QCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKH-NE--GSYA---L 1086 (1670)
Q Consensus 1013 lWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVel-nP--~NY~---L 1086 (1670)
..++++.-|... .+ +.=+++..|..|.+=++++.=-+|+.+|-+ .+.+.+..+|.+|+.- =| +|-. +
T Consensus 101 al~el~q~y~en-~n-----~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~ev 173 (711)
T COG1747 101 ALLELLQCYKEN-GN-----EQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEV 173 (711)
T ss_pred HHHHHHHHHHhc-Cc-----hhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHH
Confidence 444555444433 44 778899999999999999999998888866 6677788999999843 22 1222 6
Q ss_pred HHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHH-HHHHHhcCHHHHHHHHHhhcc
Q 000322 1087 WLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQML-QCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1087 wlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~Lv-qLY~qSGnydKAI~ti~rLEq 1158 (1670)
|--.+..- +| ..|.-+...-...+.+...+ .+++++=| +-|--+.|++.||..+-+|+.
T Consensus 174 WeKL~~~i---~d---D~D~fl~l~~kiqt~lg~~~-------~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 174 WEKLPELI---GD---DKDFFLRLQKKIQTKLGEGR-------GSVLMQDVYKKYSENENWTEAIRILKHILE 233 (711)
T ss_pred HHHHHHhc---cc---cHHHHHHHHHHHHHhhccch-------HHHHHHHHHHHhccccCHHHHHHHHHHHhh
Confidence 65444411 22 34666666655555553334 88888877 889999999999998888875
No 322
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=26.76 E-value=6.8e+02 Score=32.87 Aligned_cols=127 Identities=14% Similarity=0.067 Sum_probs=74.4
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHH-----HHHhhCCCCHH-------HHHHHHhcC
Q 000322 1027 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFS-----YSVKHNEGSYA-------LWLMYINSR 1094 (1670)
Q Consensus 1027 n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emle-----kAVelnP~NY~-------LwlmYInsr 1094 (1670)
...+.||.-+.+|+-.-.++-.+--+.+.++-.++....-..-...+. +|-.+.|+..- ---||-|..
T Consensus 28 f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~a 107 (696)
T KOG2471|consen 28 FNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFA 107 (696)
T ss_pred cCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhh
Confidence 345778888888877777777776666777655543332211111111 12223333222 235666666
Q ss_pred CCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Q 000322 1095 TPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1157 (1670)
Q Consensus 1095 ~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLE 1157 (1670)
-.|..+- .|..|++..+.+++.. ...+..+|+ .+. +..++||..+...++|+.-++=|+
T Consensus 108 Vi~yh~~-~~g~a~~~~~~lv~r~-e~le~~~aa-~v~-~l~~~l~~~t~q~e~al~~l~vL~ 166 (696)
T KOG2471|consen 108 VIFYHHE-ENGSAMQLSSNLVSRT-ESLESSSAA-SVT-LLSDLLAAETSQCEEALDYLNVLA 166 (696)
T ss_pred eeeeeHh-hcchHHHhhhhHHHHH-HHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544 8999999999999887 333223332 333 335678888888888887555444
No 323
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=25.20 E-value=2.2e+02 Score=36.06 Aligned_cols=56 Identities=18% Similarity=0.363 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCC--chHHHHHHHHHhhCCCCHHHH
Q 000322 1032 MKKALSLLSRALEADPTSEILWITYLLIFYSNTNS--VGKDDMFSYSVKHNEGSYALW 1087 (1670)
Q Consensus 1032 ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~--eea~emlekAVelnP~NY~Lw 1087 (1670)
++.-+.+..-||.+||.+=-+|++..-...+.+.+ ..-++.|++|.+.+|.||.-|
T Consensus 91 ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W 148 (421)
T KOG0529|consen 91 LDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAW 148 (421)
T ss_pred hHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccch
Confidence 35666677777777777777777777766655544 223467777777777777743
No 324
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=25.16 E-value=95 Score=28.63 Aligned_cols=35 Identities=3% Similarity=-0.163 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH
Q 000322 1051 ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1085 (1670)
Q Consensus 1051 eaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~ 1085 (1670)
+..|.++.-+++.++-+.+..+++.+++..|+|-.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 35677777778888888888888888888888876
No 325
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=25.05 E-value=98 Score=24.79 Aligned_cols=29 Identities=0% Similarity=-0.098 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 000322 1051 ILWITYLLIFYSNTNSVGKDDMFSYSVKH 1079 (1670)
Q Consensus 1051 eaWy~yl~lY~~~~~~eea~emlekAVel 1079 (1670)
.++..++.+|...+...++..++++|++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 34555566666666666666666666543
No 326
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=24.31 E-value=1.1e+02 Score=23.78 Aligned_cols=28 Identities=14% Similarity=0.311 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000322 1131 DLFLQMLQCFCMSGNTEKAIQRISRLLI 1158 (1670)
Q Consensus 1131 DILL~LvqLY~qSGnydKAI~ti~rLEq 1158 (1670)
..+-.+++.+...|+++.|++.++.+..
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3577899999999999999998888874
No 327
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.18 E-value=2.1e+02 Score=34.45 Aligned_cols=79 Identities=16% Similarity=0.107 Sum_probs=61.2
Q ss_pred hhhhccccHHHHHHHHHH----Hhc--ccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 000322 1003 KLKQVELSNEQCVEMALL----ILN--QDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYS 1076 (1670)
Q Consensus 1003 ~le~~~~d~qlWLelAl~----~Ln--q~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekA 1076 (1670)
+|+.-|.+ +.|++++.. +|| |=....|.|-+++.--+-.|..+|++.-+||.-+..-..-=+..++.+-|.++
T Consensus 212 ~lkEkP~e-~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~v 290 (329)
T KOG0545|consen 212 QLKEKPGE-PEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKV 290 (329)
T ss_pred HhccCCCC-hHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 44455554 569999853 233 33356788888888888889999999999999988877777788899999999
Q ss_pred HhhCCC
Q 000322 1077 VKHNEG 1082 (1670)
Q Consensus 1077 VelnP~ 1082 (1670)
++++|.
T Consensus 291 L~ldps 296 (329)
T KOG0545|consen 291 LELDPS 296 (329)
T ss_pred HhcChh
Confidence 999984
No 328
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=23.78 E-value=90 Score=36.98 Aligned_cols=58 Identities=12% Similarity=0.066 Sum_probs=51.7
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH
Q 000322 1028 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1085 (1670)
Q Consensus 1028 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~ 1085 (1670)
++++.++|..+|.+||+.-|.-..-|+.+..+--+.+.-..+-..|++-.+++|+...
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 4577899999999999999999999999998877777777788999999999998877
No 329
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=23.72 E-value=1.5e+02 Score=36.14 Aligned_cols=79 Identities=13% Similarity=0.187 Sum_probs=59.7
Q ss_pred ccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccC-CCCcccchHHHHHH
Q 000322 1098 NHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATG-SNDRHSLFLSDILT 1176 (1670)
Q Consensus 1098 ddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~-g~sE~~lSLsKi~~ 1176 (1670)
..|+..++++|+-.++.-.. ..+.+++--+.+.||+.++.+++.+.+.+++..|.- |..= ++.+.|+++
T Consensus 92 eeki~Elde~i~~~eedngE---------~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~Ki-Dv~l~kiRl 161 (412)
T COG5187 92 EEKIEELDERIREKEEDNGE---------TEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKI-DVFLCKIRL 161 (412)
T ss_pred HHHHHHHHHHHHHHhhcccc---------hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccch-hhHHHHHHH
Confidence 35677778888877665421 134788999999999999999999999999875533 4332 678888888
Q ss_pred hhccCCcchh
Q 000322 1177 CLTISDKLIF 1186 (1670)
Q Consensus 1177 YLt~sDR~~A 1186 (1670)
-+-.+|+...
T Consensus 162 g~~y~d~~vV 171 (412)
T COG5187 162 GLIYGDRKVV 171 (412)
T ss_pred HHhhccHHHH
Confidence 8888888665
No 330
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=23.60 E-value=6.1e+02 Score=28.22 Aligned_cols=35 Identities=3% Similarity=-0.177 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH
Q 000322 1051 ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1085 (1670)
Q Consensus 1051 eaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~ 1085 (1670)
.+|..++.+|.+.|..+.+.++|.++-+++-..-.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~ 71 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGH 71 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHH
Confidence 35557777888888777788888887777755444
No 331
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=23.58 E-value=1.2e+02 Score=25.83 Aligned_cols=29 Identities=10% Similarity=0.370 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHhh
Q 000322 1277 LECSMNLLEKYIKLYPSCLELVLMKARLQK 1306 (1670)
Q Consensus 1277 se~A~~LfdklLk~~P~d~eL~L~AAyL~~ 1306 (1670)
.+.|+.+|.+++..+|. +..||..|.++.
T Consensus 3 ~dRAR~IyeR~v~~hp~-~k~WikyAkFEe 31 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPE-VKNWIKYAKFEE 31 (32)
T ss_pred HHHHHHHHHHHHHhCCC-chHHHHHHHhhc
Confidence 46777888888887754 666777776553
No 332
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=23.37 E-value=3.2e+02 Score=28.10 Aligned_cols=111 Identities=14% Similarity=0.140 Sum_probs=60.4
Q ss_pred HhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhH-HHHHH
Q 000322 1061 YSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACIL-DLFLQ 1135 (1670)
Q Consensus 1061 ~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iL-DILL~ 1135 (1670)
...+....+..++++.+..++.+-. |..+|++.. =.+.++.|......++.++ -...|.. +.+-.
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~---------~~~ll~~l~~~~~~yd~~~-~~~~c~~~~l~~~ 87 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD---------PQKEIERLDNKSNHYDIEK-VGKLCEKAKLYEE 87 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC---------HHHHHHHHHhccccCCHHH-HHHHHHHcCcHHH
Confidence 3344455666777777776544333 666676643 1455566643223332221 1111211 35668
Q ss_pred HHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHH
Q 000322 1136 MLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY 1192 (1670)
Q Consensus 1136 LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iY 1192 (1670)
.+.||...|+++.|++.+ |.. . ++ ......|.....+...|+....
T Consensus 88 ~~~l~~k~~~~~~Al~~~--l~~--~-~d------~~~a~~~~~~~~~~~lw~~~~~ 133 (140)
T smart00299 88 AVELYKKDGNFKDAIVTL--IEH--L-GN------YEKAIEYFVKQNNPELWAEVLK 133 (140)
T ss_pred HHHHHHhhcCHHHHHHHH--HHc--c-cC------HHHHHHHHHhCCCHHHHHHHHH
Confidence 899999999999999965 221 1 11 2344555555334346766554
No 333
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=23.08 E-value=1.7e+03 Score=28.79 Aligned_cols=193 Identities=16% Similarity=0.088 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHH---HHHHHHH----Hh-cCHHHHHHHHHHHHHhCCCchhHHHH
Q 000322 1229 QRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAV---NHIWCMA----VL-NGLECSMNLLEKYIKLYPSCLELVLM 1300 (1670)
Q Consensus 1229 dnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKL---N~IR~lI----~L-EDse~A~~LfdklLk~~P~d~eL~L~ 1300 (1670)
+..|.-+|. -......||-+++..+..++...+.- .+|+.+. .+ +|-+.|+.-|+.++ -.|+--.|-|-
T Consensus 82 drgyqALSt--GliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl-~dPEtRllGLR 158 (531)
T COG3898 82 DRGYQALST--GLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAML-DDPETRLLGLR 158 (531)
T ss_pred hhHHHHHhh--hhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHh-cChHHHHHhHH
Confidence 444444453 24444466666666552222211111 2244442 23 39999999998655 46776777889
Q ss_pred HHHHhhccc--CCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hhhhccc---------
Q 000322 1301 KARLQKHDF--GDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFH--SVWKVQY--------- 1367 (1670)
Q Consensus 1301 AAyL~~K~m--~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~--gia~~Q~--------- 1367 (1670)
+.||+.+.. -+.|+.-=+.|-...|.=.= +|.-.++...+.|+||.|++|...--. -+...-.
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~Ap~l~W----A~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLt 234 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKAPQLPW----AARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLT 234 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhccCCch----HHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Confidence 999987764 44667777889999998887 888899999999999999999977111 1111111
Q ss_pred ---------ccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHH-HHHHhhhcCHHHHHHHHHHHHhhcc
Q 000322 1368 ---------SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNL-SLHRLLQNDWNEARLAIDAALKAAA 1437 (1670)
Q Consensus 1368 ---------~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD-~L~q~Lqg~~~EAfaAYDKALkanp 1437 (1670)
+...|.|.-...+ +.++.++.- +.+.- .|+. +|+.-++-...|.+-+..|
T Consensus 235 AkA~s~ldadp~~Ar~~A~~a~-----KL~pdlvPa-------------av~AAralf~--d~~~rKg~~ilE~aWK~eP 294 (531)
T COG3898 235 AKAMSLLDADPASARDDALEAN-----KLAPDLVPA-------------AVVAARALFR--DGNLRKGSKILETAWKAEP 294 (531)
T ss_pred HHHHHHhcCChHHHHHHHHHHh-----hcCCccchH-------------HHHHHHHHHh--ccchhhhhhHHHHHHhcCC
Confidence 2222222222111 112223322 33333 8888 9999999999999999999
Q ss_pred CCcHHHHHHHHHHH
Q 000322 1438 SEHFKHCVREHAML 1451 (1670)
Q Consensus 1438 ~N~~i~cLNNYAYF 1451 (1670)
-- .++.-|.+-
T Consensus 295 HP---~ia~lY~~a 305 (531)
T COG3898 295 HP---DIALLYVRA 305 (531)
T ss_pred Ch---HHHHHHHHh
Confidence 54 345555543
No 334
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.26 E-value=3.9e+02 Score=35.59 Aligned_cols=93 Identities=22% Similarity=0.302 Sum_probs=66.3
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-HHHHHHhcCCCcccchhhHHH
Q 000322 1028 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-LWLMYINSRTPLNHRLDAYDA 1106 (1670)
Q Consensus 1028 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-LwlmYInsr~slddrl~~Ydk 1106 (1670)
+.|+++.|+++.. .-+++.=|-.|+.+....++-..+.++|.+| .++. |-++|--++. ..
T Consensus 649 ~lgrl~iA~~la~-----e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a-----~d~~~LlLl~t~~g~---------~~ 709 (794)
T KOG0276|consen 649 KLGRLDIAFDLAV-----EANSEVKWRQLGDAALSAGELPLASECFLRA-----RDLGSLLLLYTSSGN---------AE 709 (794)
T ss_pred hcCcHHHHHHHHH-----hhcchHHHHHHHHHHhhcccchhHHHHHHhh-----cchhhhhhhhhhcCC---------hh
Confidence 4577888876543 3478899999999999999988899999999 5565 7777777661 23
Q ss_pred HHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHH
Q 000322 1107 ALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQ 1151 (1670)
Q Consensus 1107 AI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ 1151 (1670)
.+..|...+++....+ ..+-.|.++|+++..++
T Consensus 710 ~l~~la~~~~~~g~~N------------~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 710 GLAVLASLAKKQGKNN------------LAFLAYFLSGDYEECLE 742 (794)
T ss_pred HHHHHHHHHHhhcccc------------hHHHHHHHcCCHHHHHH
Confidence 3555555555542222 23446788999998888
No 335
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.15 E-value=2.3e+03 Score=29.79 Aligned_cols=47 Identities=6% Similarity=0.086 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHcCC--hHHHHHHHHH--HHHhhhhcccccccchhhhc
Q 000322 1331 IQCIWNQYVEYALQNGR--HDFAAELMDR--WFHSVWKVQYSQVEISDPLV 1377 (1670)
Q Consensus 1331 ~~caW~QLIq~al~~en--~d~Ai~Lc~~--ff~gia~~Q~~~deALDaLr 1377 (1670)
.+.-+..|+-.....++ .+.|++||.+ ||...-|.--+.-++-+||.
T Consensus 618 AEyDrk~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrmGn~k~AL~ 668 (846)
T KOG2066|consen 618 AEYDRKKLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRMGNAKEALK 668 (846)
T ss_pred HHHhHhhhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhhcchHHHHH
Confidence 33445555666665554 5789999988 66665555443334444443
No 336
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=22.03 E-value=1.2e+02 Score=35.79 Aligned_cols=44 Identities=20% Similarity=0.304 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHH
Q 000322 1103 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRIS 1154 (1670)
Q Consensus 1103 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ti~ 1154 (1670)
...+||....+.++..|.| -+.--.++||||..|+|+||..-++
T Consensus 16 sL~dai~~a~~qVkakPtd--------a~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 16 SLQDAIGLARDQVKAKPTD--------AGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred cHHHHHHHHHHHHhcCCcc--------ccchhHHHHHHhhcchHHHHHHHHH
Confidence 4488999999999999655 4666788999999999999987543
No 337
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=20.69 E-value=2e+02 Score=37.34 Aligned_cols=84 Identities=10% Similarity=0.078 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHHhCCCchhHHHHHHHHhhcccCCccHHHHHHHHHhCCCCCc---------------------hHHHH
Q 000322 1276 GLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVP---------------------GIQCI 1334 (1670)
Q Consensus 1276 Dse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~---------------------g~~ca 1334 (1670)
+.++.+.+..++|+.+|+|++-.++.+-=... ...++...|++|++....+-. -...+
T Consensus 183 np~aRIkaA~eALei~pdCAdAYILLAEEeA~-Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~ 261 (539)
T PF04184_consen 183 NPQARIKAAKEALEINPDCADAYILLAEEEAS-TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYA 261 (539)
T ss_pred CHHHHHHHHHHHHHhhhhhhHHHhhccccccc-CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhh
Confidence 89999999999999999999984443331111 134555566665543322111 11445
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 000322 1335 WNQYVEYALQNGRHDFAAELMDRWFH 1360 (1670)
Q Consensus 1335 W~QLIq~al~~en~d~Ai~Lc~~ff~ 1360 (1670)
+.-|...+++.|..++|+++++.-.+
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlk 287 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLK 287 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 55688888888888888888877433
No 338
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=20.68 E-value=8.7e+02 Score=29.17 Aligned_cols=182 Identities=12% Similarity=0.063 Sum_probs=111.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHHH
Q 000322 1030 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALS 1109 (1670)
Q Consensus 1030 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~ 1109 (1670)
+.++.|+.+...-++.+|+++-.-..|+++|.-.++-+.++.-|+-+.++.|....-+.+|-+.- .|+.++.
T Consensus 15 ~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~li--------r~ea~R~ 86 (273)
T COG4455 15 NSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLI--------RCEAARN 86 (273)
T ss_pred ccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHH--------HHHHHHH
Confidence 45788999999999999999999999999999999999999999999999987777888888876 7777776
Q ss_pred HHHHhhhcCCCCcchhh-hhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhH
Q 000322 1110 VLCRCASASDGDEMHAS-ACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWV 1188 (1670)
Q Consensus 1110 aLe~las~~~~Dr~~~S-a~iLDILL~LvqLY~qSGnydKAI~ti~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL 1188 (1670)
.... -++. |+- .- -.-+++...+.-+-+..+.-..|...+... |.+...+ .+- ...-.|.+|+
T Consensus 87 evfa-g~~~-Pgf--lg~p~p~wva~L~aala~h~dg~gea~~alreq---al~aa~~-~iG--------~~~gg~fawi 150 (273)
T COG4455 87 EVFA-GGAV-PGF--LGGPSPEWVAALLAALALHSDGAGEARTALREQ---ALKAAPV-PIG--------HADGGSFAWI 150 (273)
T ss_pred HHhc-cCCC-CCC--cCCCCHHHHHHHHHHHhcccCCcchHHHHHHHH---HHhhCCC-CCc--------ccCCcchhhh
Confidence 5421 1112 220 00 011455555555566666555444433222 2221111 000 2355777888
Q ss_pred HHHH-----HH------HhhccchHHHhhhh--hhhhhhccCCCCcccchhhHHHHHHHH
Q 000322 1189 CCVY-----LV------IYRKLPDAVLQLLE--CEKELFAIDWPPVQLEDDEKQRAIKLI 1235 (1670)
Q Consensus 1189 ~~iY-----ll------rYrvLPGn~y~q~e--~~KEAf~I~W~y~~vlkdEPdnalAL~ 1235 (1670)
+..- .+ +|.=+|=.=+.... .++..=++-|...++.--|..-..+++
T Consensus 151 aDsD~RlgpvlEvitnG~Y~Wipfs~IrSL~v~~psrlrDL~w~paeltl~dg~~~~a~L 210 (273)
T COG4455 151 ADSDDRLGPVLEVITNGRYLWIPFSRIRSLSVDPPSRLRDLAWRPAELTLRDGAIASALL 210 (273)
T ss_pred hhcccccCcceEEEeCCEEEEEehhhccccccCCCCChHHhhcccceEEEecCceeEEEe
Confidence 8763 11 23333322122222 355556667777777555554444443
No 339
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=20.54 E-value=6.4e+02 Score=35.26 Aligned_cols=249 Identities=15% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccc--ccccchhhhccc
Q 000322 1302 ARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQY--SQVEISDPLVAD 1379 (1670)
Q Consensus 1302 AyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~--~~deALDaLrkg 1379 (1670)
|+|..|. -+.|..-|.++-.--|..++ +++..-++--..+........ ..++||+.|.+.
T Consensus 484 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (932)
T PRK13184 484 AFLAEKL-YDQALIFYRRIRESFPGRKE-----------------GYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL 545 (932)
T ss_pred HHHhhHH-HHHHHHHHHHHhhcCCCccc-----------------chHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh
Q ss_pred -CCCCCCCCCCCCCcccccccccchhhHHHHHHH--HHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCC
Q 000322 1380 -MSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNL--SLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINE 1456 (1670)
Q Consensus 1380 -ns~i~~es~s~~vSDfy~~~~~q~d~~fa~LGD--~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~ 1456 (1670)
+++.-+ + .|||- .|.. .|+++|-...|+-||+--|..-.+.-|++|..|=.-+-
T Consensus 546 ~~~~~~~----------~-----------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (932)
T PRK13184 546 HGGVGAP----------L-----------EYLGKALVYQR--LGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHES 602 (932)
T ss_pred cCCCCCc----------h-----------HHHhHHHHHHH--hhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q ss_pred CCCCcccchhhhHHHHHHHHhhhcccccccc--cchhhhccccchhhHHHHhhhc-----CCCCCChhhHHHHHhhc-cC
Q 000322 1457 SEPKEGAPISWQLKLLNSYLDRARSLPYLKL--LPRQFINNIERPRLQQLIDNLL-----SPVSSDFSLVNLVLEVC-YG 1528 (1670)
Q Consensus 1457 ~dL~KAeqMS~~~KtVsTYLDTAWILf~~~~--lARiYI~~i~k~rv~~liDqaL-----~~~S~dss~~nkALE~W-~g 1528 (1670)
+-+.-..+++| .|=+-|++|.... +.++|.+++.|+-= +-.. .|-..-++-.+.-|.|| .-
T Consensus 603 --~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (932)
T PRK13184 603 --LYKHRREALVF-----MLLALWIAPEKISSREEEKFLEILYHKQQ----ATLFCQLDKTPLQFRSSKMELFLSFWSGF 671 (932)
T ss_pred --HHHHHHHHHHH-----HHHHHHhCcccccchHHHHHHHHHHhhcc----CCceeeccCchhhhhhhhHHHHHHHHhcC
Q ss_pred CCCcccccccccchhHHHHHHHhhc-----CcchhhHHHHHHHhhccCCCCCCCCCchhHHHHHhhhhhhhhhccCCCCc
Q 000322 1529 PSLLPRNFSKLKDLVDFVEGIMEIV-----PSNYQLAFSVFKLLNKDHNPNITDAVPESVLFWASSSLVSAIFHAVPVAP 1603 (1670)
Q Consensus 1529 ~slLpqKI~~kKyi~dfVE~ime~~-----P~Ny~Lal~v~kll~k~~~~~~~d~~s~~~~fwA~s~l~~ai~~a~pvap 1603 (1670)
+..||.-+..--.+.|| +++-+++ =+|.+++-...-.|...++ .-..|
T Consensus 672 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~ 724 (932)
T PRK13184 672 TPFLPELFQRAWDLRDY-RALADIFYVACDLGNWEFFSQFSDILAEVSD--------------------------EITFT 724 (932)
T ss_pred chhhHHHHHHHhhcccH-HHHHHHHHHHHHhccHHHHHHHHHHHHHHhh--------------------------hccch
Q ss_pred hHH----------HHHHHHHhhhchhHHHHHHHHHH
Q 000322 1604 EYV----------WVEAAGILGNISSIEEISERFFK 1629 (1670)
Q Consensus 1604 e~v----------Wveaa~~l~~l~~~~~i~~rfy~ 1629 (1670)
+.+ |+-+.+.|..=.+.+.+.+.+.+
T Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (932)
T PRK13184 725 ESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDN 760 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhh
No 340
>smart00356 ZnF_C3H1 zinc finger.
Probab=20.48 E-value=60 Score=24.75 Aligned_cols=22 Identities=36% Similarity=0.803 Sum_probs=17.2
Q ss_pred Cccceeccccccc-CCCCchhhh
Q 000322 856 WPLCMYELRGKCN-NDECPWQHV 877 (1670)
Q Consensus 856 ~~lC~fel~G~CN-d~~C~wQH~ 877 (1670)
..+|++=.+|.|+ .+.|++.|.
T Consensus 4 ~~~C~~~~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 4 TELCKFFKRGYCPYGDRCKFAHP 26 (27)
T ss_pred CCcCcCccCCCCCCCCCcCCCCc
Confidence 3478866899999 567999885
Done!