Query 000323
Match_columns 1669
No_of_seqs 111 out of 118
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 04:20:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000323.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000323hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4839 Uncharacterized conser 100.0 1.2E-71 2.6E-76 645.4 8.6 708 44-965 14-752 (753)
2 KOG4839 Uncharacterized conser 100.0 1.4E-41 3.1E-46 395.9 12.3 567 840-1452 38-671 (753)
3 KOG0495 HAT repeat protein [RN 99.9 4.4E-24 9.5E-29 253.7 30.2 321 1028-1456 529-866 (913)
4 TIGR02917 PEP_TPR_lipo putativ 99.9 6.4E-19 1.4E-23 212.2 42.0 379 1009-1438 21-430 (899)
5 TIGR02917 PEP_TPR_lipo putativ 99.9 1.3E-17 2.8E-22 200.9 46.8 412 1029-1492 275-726 (899)
6 PRK11447 cellulose synthase su 99.8 5.3E-15 1.2E-19 193.2 46.8 589 987-1661 32-734 (1157)
7 PRK09782 bacteriophage N4 rece 99.7 1E-14 2.2E-19 187.6 40.8 294 1028-1359 57-404 (987)
8 PRK11447 cellulose synthase su 99.7 6.8E-15 1.5E-19 192.2 29.4 359 1028-1433 282-739 (1157)
9 KOG0495 HAT repeat protein [RN 99.6 1.6E-13 3.5E-18 165.0 31.8 406 920-1438 256-684 (913)
10 TIGR00990 3a0801s09 mitochondr 99.6 1.3E-13 2.8E-18 169.0 29.5 79 1027-1114 139-221 (615)
11 PRK15174 Vi polysaccharide exp 99.6 3.5E-13 7.7E-18 167.5 31.5 177 1200-1453 219-403 (656)
12 PRK10049 pgaA outer membrane p 99.6 2.7E-13 5.9E-18 170.8 30.7 353 1029-1466 29-451 (765)
13 TIGR00990 3a0801s09 mitochondr 99.5 2.6E-12 5.7E-17 157.6 30.6 351 1010-1449 160-584 (615)
14 PRK10049 pgaA outer membrane p 99.5 6.9E-12 1.5E-16 158.4 34.5 358 1006-1438 45-460 (765)
15 PRK15174 Vi polysaccharide exp 99.5 3.8E-12 8.3E-17 158.4 28.7 209 1002-1237 68-291 (656)
16 PRK11788 tetratricopeptide rep 99.5 1.7E-11 3.8E-16 139.5 27.3 296 1011-1362 36-349 (389)
17 PRK14574 hmsH outer membrane p 99.4 1.9E-10 4E-15 146.7 32.7 383 1028-1463 47-471 (822)
18 KOG4626 O-linked N-acetylgluco 99.3 6.1E-11 1.3E-15 142.6 22.1 381 1028-1486 129-534 (966)
19 KOG1915 Cell cycle control pro 99.3 9.9E-09 2.1E-13 121.7 38.8 470 1001-1650 64-552 (677)
20 PRK09782 bacteriophage N4 rece 99.3 6.8E-10 1.5E-14 143.9 30.7 187 1275-1492 491-700 (987)
21 PF13429 TPR_15: Tetratricopep 99.3 1.8E-12 4E-17 143.5 6.0 260 1012-1359 10-276 (280)
22 KOG2002 TPR-containing nuclear 99.3 1.4E-09 3E-14 136.5 29.7 463 1007-1563 230-757 (1018)
23 PRK11788 tetratricopeptide rep 99.2 1.1E-09 2.3E-14 125.1 23.2 274 1004-1328 63-353 (389)
24 KOG2076 RNA polymerase III tra 99.2 4.8E-08 1E-12 122.5 35.3 574 1009-1639 138-855 (895)
25 PRK14720 transcript cleavage f 99.2 6.7E-11 1.5E-15 150.4 10.8 145 1319-1477 23-182 (906)
26 PRK10747 putative protoheme IX 99.2 1.7E-08 3.8E-13 118.9 29.2 288 1028-1435 97-391 (398)
27 PRK14574 hmsH outer membrane p 99.1 5.5E-09 1.2E-13 133.5 26.1 317 1012-1356 104-509 (822)
28 KOG1915 Cell cycle control pro 99.1 2.8E-08 6.1E-13 118.0 29.5 459 1007-1539 104-630 (677)
29 PF13429 TPR_15: Tetratricopep 99.1 7.5E-10 1.6E-14 122.9 13.6 153 1267-1466 117-272 (280)
30 KOG4626 O-linked N-acetylgluco 99.1 1.2E-09 2.5E-14 131.9 14.6 322 1002-1355 142-517 (966)
31 PRK12370 invasion protein regu 99.0 1E-08 2.2E-13 125.7 20.7 115 1027-1157 273-400 (553)
32 KOG2002 TPR-containing nuclear 99.0 1.8E-08 3.9E-13 126.8 22.8 358 1000-1477 154-532 (1018)
33 PLN03081 pentatricopeptide (PP 99.0 6.5E-08 1.4E-12 121.1 27.9 387 1012-1466 89-518 (697)
34 TIGR00540 hemY_coli hemY prote 99.0 1.6E-08 3.4E-13 119.5 20.5 277 1027-1359 96-398 (409)
35 PLN03077 Protein ECB2; Provisi 99.0 1.1E-07 2.4E-12 121.6 28.9 406 1009-1486 252-706 (857)
36 KOG0547 Translocase of outer m 98.8 3.8E-07 8.3E-12 109.2 23.3 276 1011-1447 277-577 (606)
37 TIGR02521 type_IV_pilW type IV 98.8 9.6E-07 2.1E-11 90.4 22.6 130 1008-1157 29-163 (234)
38 PF08424 NRDE-2: NRDE-2, neces 98.8 4.6E-08 1E-12 113.1 14.5 156 1002-1157 11-182 (321)
39 PRK12370 invasion protein regu 98.8 1.3E-07 2.7E-12 116.2 16.9 192 1002-1242 287-486 (553)
40 PLN03218 maturation of RBCL 1; 98.8 3.9E-06 8.4E-11 110.6 31.2 272 1029-1356 451-744 (1060)
41 PF10650 zf-C3H1: Putative zin 98.7 3.2E-09 7E-14 79.9 1.0 22 856-877 1-23 (23)
42 PLN03081 pentatricopeptide (PP 98.7 4.6E-06 1E-10 104.8 29.2 338 1009-1434 188-557 (697)
43 KOG0547 Translocase of outer m 98.7 3E-06 6.5E-11 101.8 24.8 144 1273-1438 339-495 (606)
44 KOG0624 dsRNA-activated protei 98.7 1.2E-06 2.6E-11 101.6 20.5 355 1007-1438 35-426 (504)
45 TIGR00540 hemY_coli hemY prote 98.7 3.8E-06 8.2E-11 99.6 25.1 286 1058-1435 93-400 (409)
46 PLN03218 maturation of RBCL 1; 98.7 1.3E-05 2.7E-10 105.9 32.0 339 1029-1444 420-795 (1060)
47 PRK11189 lipoprotein NlpI; Pro 98.6 9E-06 1.9E-10 92.8 24.7 123 1010-1154 64-190 (296)
48 PRK11189 lipoprotein NlpI; Pro 98.6 1.6E-06 3.5E-11 98.8 18.5 114 1028-1157 39-160 (296)
49 PLN03077 Protein ECB2; Provisi 98.6 9.1E-06 2E-10 104.4 26.1 347 1028-1466 336-715 (857)
50 COG2956 Predicted N-acetylgluc 98.5 4.4E-06 9.6E-11 96.8 19.8 257 1031-1344 51-328 (389)
51 KOG2076 RNA polymerase III tra 98.5 3.1E-05 6.8E-10 98.2 28.8 374 1008-1436 412-851 (895)
52 KOG1070 rRNA processing protei 98.5 3.1E-06 6.8E-11 109.8 20.2 241 1037-1362 1446-1705(1710)
53 PRK10370 formate-dependent nit 98.5 1.3E-06 2.7E-11 95.0 13.7 122 1027-1157 51-172 (198)
54 TIGR02521 type_IV_pilW type IV 98.5 3.2E-06 7E-11 86.6 15.7 133 1004-1157 59-197 (234)
55 PRK10747 putative protoheme IX 98.5 1.7E-05 3.8E-10 94.0 23.9 250 1028-1356 131-386 (398)
56 KOG1126 DNA-binding cell divis 98.5 9E-07 1.9E-11 109.0 12.6 216 1033-1328 404-626 (638)
57 KOG2047 mRNA splicing factor [ 98.4 0.00022 4.7E-09 88.4 31.5 136 1011-1152 103-271 (835)
58 COG3063 PilF Tfp pilus assembl 98.4 2.5E-05 5.4E-10 87.6 21.6 203 1011-1296 36-243 (250)
59 KOG1156 N-terminal acetyltrans 98.4 6.4E-05 1.4E-09 93.0 26.6 113 1029-1157 21-137 (700)
60 COG2956 Predicted N-acetylgluc 98.4 2.2E-05 4.9E-10 91.2 20.7 259 1069-1455 26-297 (389)
61 KOG1126 DNA-binding cell divis 98.4 2.1E-05 4.5E-10 97.4 20.7 291 1029-1438 333-624 (638)
62 KOG0624 dsRNA-activated protei 98.3 9.5E-06 2.1E-10 94.5 16.1 308 1003-1378 65-418 (504)
63 KOG4162 Predicted calmodulin-b 98.3 8.7E-05 1.9E-09 93.2 25.3 343 988-1354 327-777 (799)
64 TIGR02552 LcrH_SycD type III s 98.3 6.4E-06 1.4E-10 81.4 12.7 106 1036-1157 4-113 (135)
65 PRK10370 formate-dependent nit 98.2 8.5E-06 1.8E-10 88.7 12.5 107 1001-1120 64-177 (198)
66 PRK15359 type III secretion sy 98.2 9.4E-06 2E-10 83.9 11.3 103 1036-1157 14-120 (144)
67 TIGR03302 OM_YfiO outer membra 98.2 3.7E-05 8E-10 83.2 15.8 145 1007-1157 30-194 (235)
68 PRK14720 transcript cleavage f 98.1 8E-05 1.7E-09 96.5 19.3 269 1077-1454 25-307 (906)
69 TIGR03302 OM_YfiO outer membra 98.1 5.1E-05 1.1E-09 82.1 13.7 128 1011-1156 71-230 (235)
70 KOG1127 TPR repeat-containing 98.0 0.00031 6.6E-09 90.1 21.5 124 1011-1150 563-692 (1238)
71 PF13414 TPR_11: TPR repeat; P 98.0 1.4E-05 3E-10 71.3 7.2 67 1009-1080 2-69 (69)
72 COG3071 HemY Uncharacterized e 98.0 0.0031 6.7E-08 75.5 28.2 311 1006-1434 68-390 (400)
73 PLN02789 farnesyltranstransfer 98.0 0.00019 4.2E-09 84.0 18.3 115 1029-1157 51-170 (320)
74 cd05804 StaR_like StaR_like; a 98.0 0.0048 1E-07 70.5 28.7 321 1007-1435 3-337 (355)
75 KOG1156 N-terminal acetyltrans 98.0 0.00048 1E-08 85.6 21.6 304 1026-1357 52-465 (700)
76 KOG2376 Signal recognition par 98.0 0.0018 4E-08 80.1 26.3 314 1026-1356 121-483 (652)
77 PF12569 NARP1: NMDA receptor- 98.0 0.00033 7.1E-09 86.8 19.7 362 1129-1650 4-391 (517)
78 TIGR02552 LcrH_SycD type III s 98.0 8.9E-05 1.9E-09 73.4 12.1 103 1004-1120 11-117 (135)
79 cd05804 StaR_like StaR_like; a 97.9 0.0023 5E-08 73.0 23.6 128 1009-1157 42-176 (355)
80 PRK15359 type III secretion sy 97.9 8.6E-05 1.9E-09 76.9 10.9 95 1013-1121 27-125 (144)
81 KOG1174 Anaphase-promoting com 97.9 0.0013 2.9E-08 78.7 21.5 289 1031-1446 214-510 (564)
82 KOG2376 Signal recognition par 97.9 0.0025 5.4E-08 79.0 24.4 384 1044-1485 105-542 (652)
83 KOG1155 Anaphase-promoting com 97.8 0.0014 3.1E-08 79.3 21.5 134 1267-1434 336-495 (559)
84 KOG1155 Anaphase-promoting com 97.8 0.00023 5E-09 85.8 14.5 141 1029-1188 344-488 (559)
85 PLN03088 SGT1, suppressor of 97.8 0.00018 3.9E-09 84.8 13.6 85 1028-1120 15-103 (356)
86 KOG1070 rRNA processing protei 97.8 0.00085 1.9E-08 88.4 20.4 230 1069-1375 1444-1693(1710)
87 KOG0553 TPR repeat-containing 97.8 9.9E-05 2.1E-09 85.3 10.7 100 1012-1121 76-182 (304)
88 PF12569 NARP1: NMDA receptor- 97.8 0.0024 5.2E-08 79.4 22.5 87 1267-1357 200-288 (517)
89 PRK15179 Vi polysaccharide bio 97.8 0.00035 7.6E-09 89.2 15.7 115 1027-1157 98-216 (694)
90 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.00024 5.3E-09 85.4 12.9 109 1029-1156 183-295 (395)
91 cd00189 TPR Tetratricopeptide 97.7 0.00027 5.9E-09 60.7 9.4 93 1012-1117 2-98 (100)
92 KOG1173 Anaphase-promoting com 97.7 0.0077 1.7E-07 74.6 24.7 284 1009-1344 243-535 (611)
93 PF13432 TPR_16: Tetratricopep 97.7 0.0001 2.2E-09 65.4 6.6 63 1015-1082 2-64 (65)
94 KOG2047 mRNA splicing factor [ 97.7 0.0065 1.4E-07 76.0 23.8 110 1038-1157 16-130 (835)
95 KOG1125 TPR repeat-containing 97.7 0.0013 2.7E-08 81.3 17.8 239 1003-1354 312-565 (579)
96 PF05843 Suf: Suppressor of fo 97.6 0.00029 6.3E-09 80.6 11.5 120 1029-1157 15-135 (280)
97 COG4235 Cytochrome c biogenesi 97.6 0.00039 8.4E-09 80.5 11.9 107 1001-1120 147-260 (287)
98 KOG1258 mRNA processing protei 97.6 0.034 7.4E-07 69.6 29.0 86 1027-1116 91-180 (577)
99 PLN02789 farnesyltranstransfer 97.6 0.0064 1.4E-07 71.5 21.1 247 1264-1571 40-303 (320)
100 PF14559 TPR_19: Tetratricopep 97.5 0.00021 4.6E-09 63.5 6.0 63 1028-1090 4-66 (68)
101 KOG1840 Kinesin light chain [C 97.5 0.011 2.4E-07 73.5 22.6 262 1011-1356 200-475 (508)
102 COG4235 Cytochrome c biogenesi 97.5 0.00085 1.8E-08 77.8 12.2 115 1028-1157 135-255 (287)
103 COG3063 PilF Tfp pilus assembl 97.5 0.001 2.2E-08 75.2 12.3 134 1002-1157 61-201 (250)
104 PF09976 TPR_21: Tetratricopep 97.4 0.0016 3.6E-08 66.9 12.7 117 1273-1432 24-145 (145)
105 KOG1125 TPR repeat-containing 97.4 0.0011 2.3E-08 81.9 13.0 183 1262-1466 287-486 (579)
106 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.0012 2.6E-08 62.9 10.8 96 1010-1118 2-107 (119)
107 cd00189 TPR Tetratricopeptide 97.4 0.0013 2.9E-08 56.5 10.0 91 1051-1157 2-96 (100)
108 KOG0550 Molecular chaperone (D 97.4 0.0031 6.7E-08 75.8 15.1 291 1026-1448 60-364 (486)
109 KOG1840 Kinesin light chain [C 97.3 0.0066 1.4E-07 75.4 18.4 244 1128-1436 198-481 (508)
110 KOG1173 Anaphase-promoting com 97.3 0.0034 7.5E-08 77.5 15.0 221 1007-1305 309-535 (611)
111 PF05843 Suf: Suppressor of fo 97.2 0.001 2.2E-08 76.3 9.4 140 1265-1447 6-150 (280)
112 PRK15179 Vi polysaccharide bio 97.2 0.0027 5.8E-08 81.4 14.0 178 1275-1477 67-268 (694)
113 COG4783 Putative Zn-dependent 97.2 0.0026 5.6E-08 77.6 12.4 134 1011-1163 307-440 (484)
114 KOG4162 Predicted calmodulin-b 97.2 0.021 4.5E-07 72.9 20.4 328 979-1328 403-789 (799)
115 PRK10803 tol-pal system protei 97.2 0.0036 7.9E-08 71.8 12.9 98 1009-1120 141-249 (263)
116 PRK11906 transcriptional regul 97.1 0.0091 2E-07 73.1 15.5 130 1011-1156 252-399 (458)
117 KOG0128 RNA-binding protein SA 97.1 0.057 1.2E-06 69.5 22.7 345 1007-1376 144-538 (881)
118 PF12895 Apc3: Anaphase-promot 97.1 0.00074 1.6E-08 63.2 4.9 76 1028-1112 2-83 (84)
119 PF13371 TPR_9: Tetratricopept 97.0 0.0019 4.1E-08 58.2 7.0 59 1029-1087 9-67 (73)
120 KOG2003 TPR repeat-containing 97.0 0.03 6.6E-07 67.8 18.4 158 1008-1185 417-577 (840)
121 TIGR02795 tol_pal_ybgF tol-pal 96.9 0.0087 1.9E-07 57.1 11.0 96 1049-1157 2-104 (119)
122 KOG2003 TPR repeat-containing 96.9 0.011 2.3E-07 71.5 13.3 112 1029-1156 572-687 (840)
123 PRK02603 photosystem I assembl 96.9 0.013 2.8E-07 62.0 12.6 105 1008-1117 33-150 (172)
124 CHL00033 ycf3 photosystem I as 96.9 0.014 2.9E-07 61.3 12.6 103 1010-1117 35-150 (168)
125 KOG0553 TPR repeat-containing 96.8 0.0057 1.2E-07 71.3 10.3 99 1260-1438 82-182 (304)
126 PF09295 ChAPs: ChAPs (Chs5p-A 96.8 0.0058 1.3E-07 73.9 10.4 93 1011-1116 201-297 (395)
127 PF09976 TPR_21: Tetratricopep 96.8 0.019 4.2E-07 59.1 12.8 107 1029-1152 25-141 (145)
128 PLN03088 SGT1, suppressor of 96.8 0.0047 1E-07 73.2 9.3 79 1002-1085 28-106 (356)
129 KOG1258 mRNA processing protei 96.7 3 6.6E-05 53.1 36.0 122 1028-1157 58-179 (577)
130 PF14938 SNAP: Soluble NSF att 96.7 0.27 5.9E-06 56.4 22.7 242 1009-1356 2-259 (282)
131 PRK04841 transcriptional regul 96.7 1 2.2E-05 58.8 30.0 317 1029-1441 423-767 (903)
132 PRK10803 tol-pal system protei 96.6 0.018 3.9E-07 66.3 11.9 97 1048-1157 141-245 (263)
133 PRK10153 DNA-binding transcrip 96.5 0.026 5.7E-07 70.4 14.2 122 1017-1157 346-481 (517)
134 PRK10866 outer membrane biogen 96.5 0.041 8.8E-07 62.4 14.3 144 1008-1157 30-203 (243)
135 PF14938 SNAP: Soluble NSF att 96.5 0.0075 1.6E-07 68.9 8.6 143 1028-1182 55-212 (282)
136 PRK15363 pathogenicity island 96.5 0.021 4.6E-07 61.7 11.3 104 1038-1157 23-131 (157)
137 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.0058 1.3E-07 74.6 7.9 75 1004-1083 69-146 (453)
138 KOG1914 mRNA cleavage and poly 96.4 0.32 7E-06 60.8 21.4 93 1269-1364 410-505 (656)
139 PRK02603 photosystem I assembl 96.3 0.031 6.8E-07 59.1 11.3 94 1035-1144 19-121 (172)
140 KOG3785 Uncharacterized conser 96.3 0.041 8.9E-07 65.5 12.6 125 1002-1157 50-179 (557)
141 KOG1174 Anaphase-promoting com 96.3 0.23 5E-06 60.5 18.8 288 1048-1456 160-453 (564)
142 PF04733 Coatomer_E: Coatomer 96.2 0.04 8.6E-07 64.2 12.4 225 1102-1356 16-261 (290)
143 KOG0548 Molecular co-chaperone 96.2 0.12 2.6E-06 64.3 16.8 98 1026-1139 13-114 (539)
144 KOG1128 Uncharacterized conser 96.2 0.057 1.2E-06 68.8 14.1 178 1129-1356 424-612 (777)
145 PF13414 TPR_11: TPR repeat; P 96.2 0.014 3.1E-07 52.2 6.6 64 1047-1117 1-68 (69)
146 CHL00033 ycf3 photosystem I as 96.2 0.039 8.4E-07 58.0 10.9 106 1031-1152 15-136 (168)
147 PRK15363 pathogenicity island 96.2 0.018 3.9E-07 62.2 8.4 92 1011-1115 36-131 (157)
148 PF12895 Apc3: Anaphase-promot 96.1 0.015 3.2E-07 54.6 6.8 75 1063-1154 3-83 (84)
149 PF13432 TPR_16: Tetratricopep 96.1 0.0073 1.6E-07 53.6 4.4 60 1267-1327 4-65 (65)
150 KOG3617 WD40 and TPR repeat-co 96.1 0.61 1.3E-05 60.5 22.0 361 1021-1431 733-1171(1416)
151 KOG1914 mRNA cleavage and poly 96.0 7.1 0.00015 49.6 30.6 388 1002-1471 12-461 (656)
152 COG5010 TadD Flp pilus assembl 96.0 0.06 1.3E-06 62.1 11.9 108 1029-1152 114-225 (257)
153 PRK11906 transcriptional regul 96.0 0.044 9.5E-07 67.4 11.4 94 1029-1138 352-452 (458)
154 KOG1127 TPR repeat-containing 95.9 0.97 2.1E-05 59.9 23.0 118 1031-1157 474-624 (1238)
155 KOG1128 Uncharacterized conser 95.8 0.032 6.9E-07 71.0 9.7 130 1017-1162 487-620 (777)
156 KOG3785 Uncharacterized conser 95.7 0.18 4E-06 60.3 14.8 234 1085-1356 63-310 (557)
157 KOG1129 TPR repeat-containing 95.6 0.19 4.1E-06 59.8 14.3 229 1085-1437 229-461 (478)
158 PF13428 TPR_14: Tetratricopep 95.6 0.02 4.4E-07 48.4 4.9 42 1011-1057 2-43 (44)
159 PF13525 YfiO: Outer membrane 95.5 0.14 3E-06 56.2 12.2 142 1010-1157 5-169 (203)
160 PF14559 TPR_19: Tetratricopep 95.5 0.036 7.9E-07 49.3 6.4 48 1102-1157 6-53 (68)
161 PRK15331 chaperone protein Sic 95.4 0.11 2.4E-06 56.7 10.7 118 1008-1152 7-128 (165)
162 COG5010 TadD Flp pilus assembl 95.4 0.14 3E-06 59.2 11.8 140 1277-1463 50-189 (257)
163 KOG3060 Uncharacterized conser 95.2 0.72 1.6E-05 53.8 16.8 181 1225-1438 26-224 (289)
164 PF13428 TPR_14: Tetratricopep 95.2 0.034 7.4E-07 47.1 4.8 43 1049-1091 1-43 (44)
165 PF13525 YfiO: Outer membrane 95.1 0.27 5.9E-06 54.0 12.6 128 1003-1148 35-197 (203)
166 PF13431 TPR_17: Tetratricopep 94.8 0.022 4.8E-07 46.6 2.7 32 1037-1068 1-32 (34)
167 PRK10866 outer membrane biogen 94.7 0.73 1.6E-05 52.5 15.1 129 1011-1157 70-240 (243)
168 KOG0550 Molecular chaperone (D 94.4 0.47 1E-05 58.0 13.2 185 1029-1307 183-369 (486)
169 PLN03098 LPA1 LOW PSII ACCUMUL 94.2 0.1 2.3E-06 64.2 7.7 66 1043-1116 69-141 (453)
170 KOG0548 Molecular co-chaperone 94.2 0.4 8.6E-06 59.9 12.5 87 1026-1121 369-459 (539)
171 PF07719 TPR_2: Tetratricopept 94.0 0.08 1.7E-06 41.3 4.0 34 1049-1082 1-34 (34)
172 PF13371 TPR_9: Tetratricopept 93.8 0.19 4.1E-06 45.4 6.7 57 1056-1121 2-62 (73)
173 KOG0543 FKBP-type peptidyl-pro 93.6 0.54 1.2E-05 57.3 11.7 92 1264-1363 261-354 (397)
174 PF08424 NRDE-2: NRDE-2, neces 93.6 0.64 1.4E-05 54.9 12.2 134 1277-1436 48-185 (321)
175 PF12688 TPR_5: Tetratrico pep 93.5 0.54 1.2E-05 48.8 10.2 90 1050-1152 2-98 (120)
176 KOG1129 TPR repeat-containing 93.4 0.8 1.7E-05 54.8 12.5 128 1008-1160 256-389 (478)
177 PRK10153 DNA-binding transcrip 93.3 1.2 2.5E-05 56.3 14.5 129 1002-1149 368-505 (517)
178 PF04733 Coatomer_E: Coatomer 93.2 0.22 4.8E-06 58.1 7.7 109 1029-1156 116-228 (290)
179 PF00515 TPR_1: Tetratricopept 93.2 0.1 2.2E-06 41.3 3.4 34 1049-1082 1-34 (34)
180 KOG4642 Chaperone-dependent E3 93.2 0.52 1.1E-05 54.5 10.1 106 1026-1142 21-130 (284)
181 COG4783 Putative Zn-dependent 93.0 6.3 0.00014 49.5 19.5 101 1041-1157 298-402 (484)
182 COG5107 RNA14 Pre-mRNA 3'-end 92.9 2.7 5.9E-05 52.2 16.0 90 1272-1363 444-534 (660)
183 PRK04841 transcriptional regul 92.6 4.4 9.5E-05 53.1 18.8 120 1028-1157 465-601 (903)
184 COG0457 NrfG FOG: TPR repeat [ 92.4 2.6 5.7E-05 40.7 12.5 115 1028-1157 108-230 (291)
185 COG4785 NlpI Lipoprotein NlpI, 92.4 0.48 1E-05 54.2 8.5 117 1027-1150 111-258 (297)
186 PF07719 TPR_2: Tetratricopept 92.2 0.24 5.2E-06 38.7 4.3 30 1407-1438 5-34 (34)
187 KOG0128 RNA-binding protein SA 92.1 7.8 0.00017 51.2 19.3 278 1032-1343 96-392 (881)
188 smart00386 HAT HAT (Half-A-TPR 91.9 0.16 3.5E-06 38.7 2.9 27 1623-1649 6-32 (33)
189 PF13181 TPR_8: Tetratricopept 91.4 0.2 4.4E-06 39.4 3.1 34 1049-1082 1-34 (34)
190 PF12688 TPR_5: Tetratrico pep 91.2 1.6 3.5E-05 45.4 10.2 80 1028-1115 14-103 (120)
191 PF00515 TPR_1: Tetratricopept 91.1 0.3 6.6E-06 38.6 3.8 30 1407-1438 5-34 (34)
192 PF13431 TPR_17: Tetratricopep 91.0 0.21 4.6E-06 40.9 2.9 33 1316-1352 2-34 (34)
193 PF06552 TOM20_plant: Plant sp 90.9 0.45 9.8E-06 52.9 6.2 84 1001-1084 16-115 (186)
194 PF13181 TPR_8: Tetratricopept 90.9 0.38 8.2E-06 37.8 4.2 31 1406-1438 4-34 (34)
195 KOG2396 HAT (Half-A-TPR) repea 90.9 0.58 1.3E-05 58.3 7.7 82 1008-1094 103-185 (568)
196 KOG3060 Uncharacterized conser 90.5 11 0.00023 44.6 16.6 112 1029-1157 66-182 (289)
197 KOG2053 Mitochondrial inherita 90.4 35 0.00075 45.9 22.8 106 1027-1150 21-131 (932)
198 COG5191 Uncharacterized conser 90.4 0.23 4.9E-06 58.9 3.5 65 1275-1343 122-188 (435)
199 COG1729 Uncharacterized protei 90.0 2 4.3E-05 50.3 10.6 93 1052-1157 144-243 (262)
200 KOG3617 WD40 and TPR repeat-co 89.9 19 0.00041 47.9 19.5 213 1008-1221 809-1063(1416)
201 KOG2300 Uncharacterized conser 89.9 69 0.0015 41.0 24.7 131 1011-1157 47-198 (629)
202 KOG3081 Vesicle coat complex C 89.8 6.9 0.00015 46.3 14.5 218 1102-1348 23-258 (299)
203 COG0457 NrfG FOG: TPR repeat [ 89.6 6 0.00013 38.3 12.0 117 1028-1157 72-195 (291)
204 KOG0543 FKBP-type peptidyl-pro 89.4 1.8 3.8E-05 53.1 10.0 88 1026-1117 268-356 (397)
205 KOG3824 Huntingtin interacting 88.7 0.5 1.1E-05 56.0 4.6 58 1027-1084 128-185 (472)
206 PRK15331 chaperone protein Sic 88.4 1.4 3E-05 48.5 7.5 93 1011-1116 38-134 (165)
207 COG2976 Uncharacterized protei 88.1 2.4 5.2E-05 48.0 9.1 107 1311-1438 70-192 (207)
208 smart00386 HAT HAT (Half-A-TPR 88.1 0.83 1.8E-05 34.8 4.1 30 1030-1059 2-31 (33)
209 KOG1586 Protein required for f 88.1 24 0.00051 41.6 17.0 119 1228-1356 131-258 (288)
210 KOG4555 TPR repeat-containing 87.9 2.2 4.9E-05 46.0 8.3 81 1028-1116 56-144 (175)
211 KOG4234 TPR repeat-containing 86.9 4.1 8.9E-05 46.6 10.1 113 1000-1121 76-201 (271)
212 COG4105 ComL DNA uptake lipopr 86.9 72 0.0016 37.8 20.2 186 1087-1328 42-238 (254)
213 PF13424 TPR_12: Tetratricopep 86.7 0.56 1.2E-05 43.1 2.9 63 1012-1079 7-76 (78)
214 COG5191 Uncharacterized conser 86.7 0.69 1.5E-05 55.0 4.3 82 1007-1093 104-186 (435)
215 KOG3081 Vesicle coat complex C 86.7 37 0.0008 40.6 17.8 57 1271-1328 218-277 (299)
216 PF13512 TPR_18: Tetratricopep 86.0 6.4 0.00014 42.5 10.6 51 1102-1157 25-75 (142)
217 PF03704 BTAD: Bacterial trans 85.8 2.7 5.8E-05 43.2 7.5 49 1028-1076 75-123 (146)
218 PF02259 FAT: FAT domain; Int 85.4 55 0.0012 37.9 18.6 156 1289-1453 141-304 (352)
219 PF13424 TPR_12: Tetratricopep 85.1 1.8 3.9E-05 39.8 5.3 62 1046-1115 2-74 (78)
220 PF10300 DUF3808: Protein of u 84.7 8.4 0.00018 48.2 12.4 113 1028-1157 246-375 (468)
221 PF03704 BTAD: Bacterial trans 84.6 7.9 0.00017 39.8 10.3 98 1030-1157 21-124 (146)
222 PF10345 Cohesin_load: Cohesin 83.1 1.6E+02 0.0034 38.3 24.0 99 1048-1157 58-167 (608)
223 KOG0376 Serine-threonine phosp 82.5 2.8 6.1E-05 52.3 7.0 91 1026-1121 15-105 (476)
224 KOG2053 Mitochondrial inherita 81.7 1.3E+02 0.0029 40.8 21.4 289 1029-1356 240-566 (932)
225 PF04184 ST7: ST7 protein; In 81.6 4.2 9.2E-05 51.2 8.1 112 1032-1156 185-322 (539)
226 KOG1492 C3H1-type Zn-finger pr 81.4 0.58 1.3E-05 52.8 0.7 33 845-877 250-283 (377)
227 COG3071 HemY Uncharacterized e 81.4 1.6E+02 0.0034 37.1 21.9 83 1026-1117 129-217 (400)
228 COG5107 RNA14 Pre-mRNA 3'-end 80.4 70 0.0015 40.7 17.3 167 1037-1242 30-206 (660)
229 COG1729 Uncharacterized protei 80.4 6.3 0.00014 46.3 8.5 101 1013-1120 144-247 (262)
230 smart00028 TPR Tetratricopepti 78.8 3.5 7.6E-05 29.2 3.9 29 1407-1437 5-33 (34)
231 KOG2396 HAT (Half-A-TPR) repea 78.8 10 0.00023 47.9 10.0 100 1032-1142 88-187 (568)
232 PF04910 Tcf25: Transcriptiona 77.6 6.5 0.00014 47.7 7.9 130 1102-1243 9-150 (360)
233 PF10345 Cohesin_load: Cohesin 76.9 2.4E+02 0.0052 36.7 29.4 133 1008-1157 57-207 (608)
234 PF10300 DUF3808: Protein of u 76.3 6.4 0.00014 49.2 7.5 103 1275-1378 248-373 (468)
235 KOG4648 Uncharacterized conser 76.0 4 8.7E-05 49.4 5.3 106 1198-1340 102-208 (536)
236 PF08631 SPO22: Meiosis protei 75.8 43 0.00093 39.0 13.5 93 1225-1324 50-152 (278)
237 KOG1308 Hsp70-interacting prot 74.7 1.4 3.1E-05 53.1 1.4 136 1225-1381 89-226 (377)
238 PF02259 FAT: FAT domain; Int 74.7 1E+02 0.0022 35.7 16.2 188 1028-1242 101-303 (352)
239 KOG1308 Hsp70-interacting prot 74.6 1.6 3.5E-05 52.6 1.8 117 1026-1150 125-243 (377)
240 KOG4648 Uncharacterized conser 73.0 5 0.00011 48.6 5.2 58 1026-1084 108-165 (536)
241 PF13512 TPR_18: Tetratricopep 72.5 32 0.00068 37.5 10.5 69 1011-1084 11-82 (142)
242 KOG4340 Uncharacterized conser 71.7 1.2E+02 0.0026 37.1 15.6 280 1030-1356 25-335 (459)
243 KOG2796 Uncharacterized conser 71.6 67 0.0014 38.6 13.4 166 999-1196 155-338 (366)
244 COG3118 Thioredoxin domain-con 70.6 33 0.00072 41.3 11.0 114 1028-1157 147-264 (304)
245 COG4700 Uncharacterized protei 69.6 42 0.00092 38.6 11.0 133 1309-1466 72-218 (251)
246 smart00028 TPR Tetratricopepti 67.9 5.9 0.00013 28.0 2.9 32 1050-1081 2-33 (34)
247 PF13176 TPR_7: Tetratricopept 67.7 6.5 0.00014 32.3 3.3 28 1407-1436 3-30 (36)
248 KOG1586 Protein required for f 65.7 53 0.0011 38.9 11.0 138 1011-1157 55-226 (288)
249 PF13281 DUF4071: Domain of un 65.5 18 0.0004 44.5 7.9 127 1311-1477 158-295 (374)
250 PF08631 SPO22: Meiosis protei 65.4 2.8E+02 0.006 32.5 22.2 105 1028-1156 6-114 (278)
251 PF11207 DUF2989: Protein of u 65.2 58 0.0013 37.4 11.1 126 1003-1148 57-197 (203)
252 KOG3824 Huntingtin interacting 64.4 21 0.00045 43.2 7.8 93 1259-1361 115-208 (472)
253 PF06552 TOM20_plant: Plant sp 63.8 30 0.00065 39.2 8.4 81 1276-1356 7-98 (186)
254 PF08311 Mad3_BUB1_I: Mad3/BUB 63.2 92 0.002 32.8 11.5 100 1037-1152 7-122 (126)
255 KOG1941 Acetylcholine receptor 63.0 1.4E+02 0.0029 37.5 14.1 167 987-1183 54-243 (518)
256 smart00101 14_3_3 14-3-3 homol 60.9 36 0.00079 39.8 8.8 165 1273-1471 14-198 (244)
257 PF14561 TPR_20: Tetratricopep 60.1 18 0.00039 36.0 5.4 48 1034-1081 7-54 (90)
258 PF11207 DUF2989: Protein of u 60.0 21 0.00045 40.9 6.5 72 990-1067 113-196 (203)
259 PF13174 TPR_6: Tetratricopept 60.0 8.9 0.00019 29.5 2.7 15 1032-1046 17-31 (33)
260 KOG1538 Uncharacterized conser 59.7 1.6E+02 0.0034 39.1 14.4 99 1283-1436 736-835 (1081)
261 PF13281 DUF4071: Domain of un 59.6 1.2E+02 0.0027 37.7 13.3 182 1260-1453 141-354 (374)
262 PRK10941 hypothetical protein; 59.0 31 0.00067 40.7 8.0 58 1027-1084 193-250 (269)
263 KOG4555 TPR repeat-containing 58.9 1.1E+02 0.0023 33.8 11.1 84 1273-1356 56-140 (175)
264 KOG2610 Uncharacterized conser 57.4 34 0.00073 42.0 7.9 79 1028-1114 188-274 (491)
265 KOG3616 Selective LIM binding 55.6 47 0.001 43.9 9.1 184 1315-1525 465-684 (1636)
266 PF13174 TPR_6: Tetratricopept 54.8 16 0.00036 28.1 3.4 28 1130-1157 1-28 (33)
267 KOG3783 Uncharacterized conser 53.1 6.7E+02 0.014 33.0 18.8 73 1032-1115 250-331 (546)
268 PF09986 DUF2225: Uncharacteri 51.5 51 0.0011 37.7 7.9 70 1085-1157 124-193 (214)
269 COG4785 NlpI Lipoprotein NlpI, 51.0 76 0.0016 37.3 9.0 97 1027-1139 77-179 (297)
270 COG4105 ComL DNA uptake lipopr 50.9 2.1E+02 0.0046 34.1 12.8 132 1007-1157 68-231 (254)
271 KOG2300 Uncharacterized conser 50.4 2E+02 0.0043 37.2 13.0 158 1257-1427 43-234 (629)
272 KOG3364 Membrane protein invol 49.2 41 0.00089 36.8 6.3 67 1085-1165 38-105 (149)
273 KOG1550 Extracellular protein 48.2 7.5E+02 0.016 32.2 21.1 128 1008-1150 242-385 (552)
274 COG1747 Uncharacterized N-term 45.2 4.8E+02 0.01 34.3 15.1 86 1267-1356 106-194 (711)
275 PF09670 Cas_Cas02710: CRISPR- 44.6 2.3E+02 0.0049 35.1 12.4 130 1011-1157 132-269 (379)
276 smart00299 CLH Clathrin heavy 44.2 1.7E+02 0.0037 30.1 9.8 43 1030-1073 22-64 (140)
277 COG3629 DnrI DNA-binding trans 44.0 1.6E+02 0.0035 35.4 10.7 57 1085-1157 159-215 (280)
278 PF14853 Fis1_TPR_C: Fis1 C-te 43.9 42 0.00091 30.9 4.7 33 1408-1444 6-38 (53)
279 KOG1464 COP9 signalosome, subu 43.7 3.4E+02 0.0074 33.1 12.9 92 1082-1182 25-120 (440)
280 PF10602 RPN7: 26S proteasome 43.4 1E+02 0.0022 34.1 8.5 60 1085-1157 42-101 (177)
281 KOG0530 Protein farnesyltransf 43.4 70 0.0015 38.4 7.4 71 1014-1088 46-117 (318)
282 KOG2422 Uncharacterized conser 42.9 81 0.0018 41.1 8.4 101 1129-1243 284-389 (665)
283 KOG2034 Vacuolar sorting prote 42.6 2.6E+02 0.0057 38.3 13.0 52 1085-1155 364-415 (911)
284 COG0790 FOG: TPR repeat, SEL1 42.5 4.3E+02 0.0092 30.4 13.6 124 1011-1150 74-212 (292)
285 PF12854 PPR_1: PPR repeat 42.4 34 0.00074 28.1 3.5 27 1129-1155 7-33 (34)
286 COG3118 Thioredoxin domain-con 41.6 1.2E+02 0.0026 36.8 9.1 92 1260-1356 168-261 (304)
287 TIGR01987 HI0074 nucleotidyltr 41.5 2.1E+02 0.0045 30.6 9.9 86 1028-1114 2-108 (123)
288 smart00777 Mad3_BUB1_I Mad3/BU 40.8 1.7E+02 0.0036 31.4 9.1 87 1050-1152 23-122 (125)
289 COG2976 Uncharacterized protei 40.0 1.1E+02 0.0024 35.4 8.1 76 1261-1342 127-202 (207)
290 COG2912 Uncharacterized conser 39.4 44 0.00096 39.8 5.2 56 1029-1084 195-250 (269)
291 PF01535 PPR: PPR repeat; Int 39.1 33 0.00071 26.0 2.8 27 1131-1157 2-28 (31)
292 smart00101 14_3_3 14-3-3 homol 38.5 5.1E+02 0.011 30.7 13.4 49 1130-1191 2-50 (244)
293 PF12862 Apc5: Anaphase-promot 37.6 42 0.0009 33.1 4.0 57 1028-1084 11-76 (94)
294 PF04190 DUF410: Protein of un 37.5 4.3E+02 0.0094 31.1 12.7 160 1102-1289 5-170 (260)
295 KOG1130 Predicted G-alpha GTPa 36.8 2.3E+02 0.0051 36.0 10.6 212 1048-1296 134-375 (639)
296 KOG4234 TPR repeat-containing 36.6 69 0.0015 37.3 5.9 61 1026-1086 145-205 (271)
297 KOG0530 Protein farnesyltransf 36.5 2.5E+02 0.0054 34.1 10.4 82 1428-1525 210-291 (318)
298 PF04781 DUF627: Protein of un 35.5 93 0.002 32.9 6.2 64 1016-1084 2-79 (111)
299 KOG4147 Uncharacterized conser 35.4 26 0.00057 36.7 2.2 42 14-62 45-86 (127)
300 TIGR00756 PPR pentatricopeptid 35.3 57 0.0012 24.9 3.7 27 1131-1157 2-28 (35)
301 PF13374 TPR_10: Tetratricopep 35.2 47 0.001 26.6 3.3 27 1407-1435 6-32 (42)
302 PF14561 TPR_20: Tetratricopep 34.9 1.2E+02 0.0026 30.3 6.7 59 1001-1064 13-73 (90)
303 KOG0985 Vesicle coat protein c 34.7 1.3E+03 0.028 33.1 17.1 225 1029-1285 1293-1587(1666)
304 COG5159 RPN6 26S proteasome re 34.5 9.9E+02 0.021 29.7 16.2 130 1013-1156 6-152 (421)
305 KOG0890 Protein kinase of the 34.0 2.1E+03 0.046 33.4 27.0 82 1028-1120 1396-1481(2382)
306 PF13176 TPR_7: Tetratricopept 33.8 43 0.00094 27.5 2.9 25 1052-1076 2-26 (36)
307 PF09797 NatB_MDM20: N-acetylt 33.5 4.3E+02 0.0093 32.1 12.3 91 1023-1114 191-286 (365)
308 COG3629 DnrI DNA-binding trans 33.4 1.2E+02 0.0025 36.5 7.4 52 1027-1078 165-216 (280)
309 PF13041 PPR_2: PPR repeat fam 32.5 1.1E+02 0.0023 26.5 5.3 33 1130-1165 4-36 (50)
310 PF11817 Foie-gras_1: Foie gra 31.1 1.4E+02 0.003 34.6 7.3 62 1084-1155 183-244 (247)
311 KOG4279 Serine/threonine prote 30.7 99 0.0021 41.3 6.5 81 1367-1466 258-345 (1226)
312 COG4700 Uncharacterized protei 30.5 8.9E+02 0.019 28.6 13.0 131 1065-1212 72-212 (251)
313 PF00244 14-3-3: 14-3-3 protei 30.2 8E+02 0.017 28.6 13.2 177 1130-1360 2-198 (236)
314 PF04053 Coatomer_WDAD: Coatom 29.5 1.1E+02 0.0024 38.7 6.7 111 1010-1151 307-424 (443)
315 PF12862 Apc5: Anaphase-promot 29.3 3.4E+02 0.0074 26.8 8.8 82 1340-1452 7-88 (94)
316 PF02184 HAT: HAT (Half-A-TPR) 29.0 81 0.0018 26.9 3.6 27 1031-1058 3-29 (32)
317 KOG4642 Chaperone-dependent E3 28.7 68 0.0015 38.1 4.3 64 1311-1378 28-104 (284)
318 KOG1941 Acetylcholine receptor 28.7 2.4E+02 0.0052 35.5 8.9 114 1029-1152 136-269 (518)
319 PF10579 Rapsyn_N: Rapsyn N-te 28.5 1.3E+02 0.0028 30.3 5.6 58 1014-1076 10-67 (80)
320 KOG2471 TPR repeat-containing 28.1 6.2E+02 0.013 33.2 12.4 127 1026-1156 28-166 (696)
321 COG1747 Uncharacterized N-term 27.7 7.7E+02 0.017 32.6 13.1 126 1012-1157 101-233 (711)
322 cd02679 MIT_spastin MIT: domai 27.3 49 0.0011 32.8 2.6 18 453-470 26-43 (79)
323 PF14853 Fis1_TPR_C: Fis1 C-te 25.6 92 0.002 28.7 3.8 35 1050-1084 2-36 (53)
324 PF13374 TPR_10: Tetratricopep 25.3 96 0.0021 24.8 3.5 29 1050-1078 3-31 (42)
325 KOG0529 Protein geranylgeranyl 24.9 2.2E+02 0.0049 36.0 7.9 56 1031-1086 91-148 (421)
326 COG5187 RPN7 26S proteasome re 24.5 1.4E+02 0.0031 36.3 6.0 79 1097-1185 92-171 (412)
327 KOG0545 Aryl-hydrocarbon recep 24.3 2.1E+02 0.0045 34.5 7.1 79 1002-1081 212-296 (329)
328 COG3898 Uncharacterized membra 24.0 1.7E+03 0.036 28.9 15.4 193 1228-1450 82-305 (531)
329 PF13812 PPR_3: Pentatricopept 23.9 1.1E+02 0.0024 23.7 3.5 28 1130-1157 2-29 (34)
330 PF02184 HAT: HAT (Half-A-TPR) 23.8 1.2E+02 0.0026 25.9 3.8 29 1276-1305 3-31 (32)
331 smart00299 CLH Clathrin heavy 23.7 3.2E+02 0.0069 28.2 7.8 111 1060-1191 18-133 (140)
332 COG4976 Predicted methyltransf 23.6 92 0.002 36.9 4.1 58 1027-1084 7-64 (287)
333 PF10602 RPN7: 26S proteasome 23.3 6.1E+02 0.013 28.2 10.3 34 1051-1084 38-71 (177)
334 KOG2066 Vacuolar assembly/sort 23.0 2.2E+03 0.047 29.9 17.7 46 1330-1375 618-667 (846)
335 KOG4340 Uncharacterized conser 23.0 1.6E+03 0.034 28.2 15.9 110 1027-1157 156-269 (459)
336 KOG0276 Vesicle coat complex C 23.0 3.8E+02 0.0081 35.7 9.5 93 1027-1150 649-742 (794)
337 KOG0545 Aryl-hydrocarbon recep 22.4 1.5E+02 0.0033 35.6 5.6 83 1264-1348 234-318 (329)
338 COG4455 ImpE Protein of avirul 22.3 7.7E+02 0.017 29.6 10.9 182 1029-1234 15-210 (273)
339 COG4455 ImpE Protein of avirul 22.0 1.2E+02 0.0026 35.8 4.7 44 1102-1153 16-59 (273)
340 smart00356 ZnF_C3H1 zinc finge 21.2 57 0.0012 24.9 1.4 22 855-876 4-26 (27)
341 PRK13184 pknD serine/threonine 21.1 6.1E+02 0.013 35.4 11.5 249 1301-1628 484-760 (932)
342 PF04184 ST7: ST7 protein; In 21.0 1.9E+02 0.0042 37.4 6.5 83 1275-1358 183-286 (539)
No 1
>KOG4839 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.2e-71 Score=645.44 Aligned_cols=708 Identities=15% Similarity=0.079 Sum_probs=571.2
Q ss_pred CCCCCCCCCceEEEecCCCCCCcc-ccccccccccccCCceeecCCCCCCCchhHhhhhh-HHHhhhhcccccccCCCCc
Q 000323 44 WFPSSGKNDNLVISFSDDDSGSDT-EDYRHKTAFENKSNTTRVDGSGRPPTSSAVKVKNL-QQTARNVSKAIPKKLSPSR 121 (1669)
Q Consensus 44 ~~~~~g~~~nlvi~fsdd~sgs~~-e~~~~~~~~~~~~~~~~v~~n~r~~~~~~~k~~~~-~~~~r~~~~~~pkk~~~~~ 121 (1669)
.|+++|.|.++||+|||+|+|+|| ++.|.+++ . -|-.++-|.+++.++.... |...| .|.++..+..
T Consensus 14 ~~~s~~~n~~~~~NfSd~~~g~es~d~~~~~qs-n------~I~P~~~p~tF~~t~~~~p~~~d~~----~it~~~ls~~ 82 (753)
T KOG4839|consen 14 PYHSPLLNFKSYRNFSDYYRGKESLDLSSVSQS-N------MIEPDQCPCTFDLTGTCNPDDCDWQ----HITDYTLSRK 82 (753)
T ss_pred cCCCccccchhcccCCccccccccCCCcccccc-c------cCCCccCCcccccccCCCCcccccc----cccccccChh
Confidence 388999999999999999999999 55555554 2 2344888989999999999 88888 7888876666
Q ss_pred ceeeeccCCCCCCCcCCCCCCccccccccccccccccccc---------cccccccCchhhHHHHHHHHhhhhhhhhhHh
Q 000323 122 TLTTTRNHGGANSWVSRPPSVDQRSRVRNFSIKTKLGSLE---------CGDQVGLRNSKLQDLRQQIALRESELKLKAA 192 (1669)
Q Consensus 122 ~f~~tk~~~~a~s~~~~~~~~~q~s~~~~~~~~~~l~~~e---------~~~~~~~n~~k~qdlr~qialre~elklkaa 192 (1669)
+|.. .+.+. +.-.+.++........||.| ..+.+.+|.+|+||+. |++|+++ |++++
T Consensus 83 ~F~~-----~~~~~------~sl~~~a~t~~~~~~taSSektvsK~~~~~e~~~~~n~nk~~~~s--~~~~ss~-~~~~~ 148 (753)
T KOG4839|consen 83 LFQD-----ILSYN------LSLIGCAETSTNEEITASSEKTVSKLFGVNEDRMSMNQNKVLLVS--NINESSG-HTPPF 148 (753)
T ss_pred hhhh-----hhhcC------hhhhcCcccCCccccccchhhhHHhhhCCchhhhccchHHHHHHH--hhhhccc-CCCCc
Confidence 8873 22222 23334444445555667776 3455588999999999 9999999 99999
Q ss_pred hccccccc--------ccccccccCCCCCCCCCcccceeccccccccccCCCcccccccccCCCCCCCCCCCCccCCCcc
Q 000323 193 QQNKDLVI--------DSCENYHLGRLDQKEPDKKRLKVSGSYSHRLTTDGRQDIPATKSTVPVKEPTPERSSLQDGNKV 264 (1669)
Q Consensus 193 ~q~k~~~~--------vs~~~~~~~~l~~kepd~krlkv~~sy~~~~~~d~~q~~~~~k~~~~~k~~~~~~~~~~~r~~~ 264 (1669)
|..||.+. ++..+.|.+.+||.||.+||+++++- +.. +||....+-..+-+++|
T Consensus 149 q~~Kd~r~~K~t~~rrp~~~ssdT~~~e~se~pkk~~~~s~~-------~~~--~p~~D~~vt~~~~~~~n--------- 210 (753)
T KOG4839|consen 149 QTYKDKRKWKPTFWRRPISDSSDTSDEEQSEGPKKYAFQSEN-------QIN--VPALDTVVTPDDVRYTN--------- 210 (753)
T ss_pred cchhhhccCCCcccccccccccccchhcccccchhhhccCcc-------ccc--Cccccceeccccccccc---------
Confidence 99999987 67788899999999999999999998 333 36666666665656555
Q ss_pred cCCCCCCCccccccceeeecccCCccccCCCcccccccccCCCCCCCCccccccccccccccccccccccccCCcccccc
Q 000323 265 DRSQKDIPRSRIESEIVKWDKQNGKQVHVPPENVLSVVKDVANPNASCNQSDRDSRRVNTGPVLHNTSQLANMTSSNFLK 344 (1669)
Q Consensus 265 ~~~~k~~p~~r~~s~~vk~~~q~~~~~~~s~~~~~~~~~~~~n~n~~~~q~d~~~~~v~~~~~~~~~~~~~~~~~~~~~k 344 (1669)
|..|++ .+..||+.|.+|.|....+ |.| +++ | .+|+.++++..|
T Consensus 211 ------------e~d~~~------------------~le~gV~~N~s~~~l~~ks--~v~-~l~-~--~eG~~SsS~~sq 254 (753)
T KOG4839|consen 211 ------------ETDDIA------------------NLEAGVLENPSHVQLWLKS--AVK-YLN-Q--NEGECSSSLDSQ 254 (753)
T ss_pred ------------chhHHH------------------hhccccccChHHHhhccch--hhh-hhh-h--hcCccchhhhcc
Confidence 333443 5678999999999999988 665 344 3 899999999999
Q ss_pred ccccccCCCCCccCCCCCCCccccccccccccccccccccccCCC--CCCCCCCc---cccccccccccCCCCccccCCC
Q 000323 345 NAERIESDPASTAAGCHPSSFLSNATREQNVMENSEYTKAISGDK--IDGPSFNN---VHQVNTASLGNFSGNGNVSGNS 419 (1669)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~---~~~~~~a~l~n~~g~~nv~~h~ 419 (1669)
.+..+++ +.|++..+.|+ .++..+ ...||++.+|+| +..++|++ +++.++-.+.|++|.+.++ .
T Consensus 255 gsl~ln~-----~kaaR~le~~K-iD~~~s---~~h~L~~~nGt~~v~~e~~n~~~~~lp~~~~~~~~~~p~st~~p--~ 323 (753)
T KOG4839|consen 255 GSLALNV-----LKAARALENNK-IDNPES---WCHYLRLFNGTKDVVQEMCNTAVEYLPDYQSFWTFLHPESTFEP--K 323 (753)
T ss_pred ccceeeh-----hhhhhHHhhcc-CCCccc---hhheeeccCCChhHHHHhhhhhhhcccccccchhccCCCCcCCc--c
Confidence 9988886 77888888887 553333 478999999999 88888887 8888999999999999999 9
Q ss_pred cchhhhHHhhHHHhhHHHHHHHHhhhcchhhhhHHHHHHHHHHHHHHHHhhhhHHHhHhhhhhcccccceeecCCccccc
Q 000323 420 NVDIQSLLDMEELLDKELEEAQEHRRICEIEERKALKAYRKAQRALIEANASCTKLYRQRELCSARFRSFVMDDSNLLWS 499 (1669)
Q Consensus 420 n~d~~sl~~mee~~dkeleeaqe~r~~ceieer~alkayrkaqraliean~rc~~ly~kre~~sa~~~s~i~~~s~l~~~ 499 (1669)
+++|.++++.|+-.||+++++|+..|..|+++|||++.|+++||+++|||+||+++|.+||+. ..+||++|+.|.||
T Consensus 324 ~~v~e~~~~~~~g~dk~~~~~~~s~~llE~~~~n~~~~~~~~~rs~~lA~lrnae~~~~r~~~---~~~Li~rd~~l~wp 400 (753)
T KOG4839|consen 324 DYVCERMLEFLMGADKQETSNILSFQLLEALLFNVQLHIFTGRRSSALAILRNAEKSANRGIV---AEYLITRDRCLAWP 400 (753)
T ss_pred hhhHhhhhhhhhccchhhhHHHHHHHHhhhchhhhhhhhhhhhhhHHHHHHHhhHHHhhhchh---hhhheehhhhhccc
Confidence 999999999999999999999999999999999999999999999999999999999999954 89999999999999
Q ss_pred cccccccccccccCCCCCCccccc-cC---CCCcccCCCcCCCCCCCCCCCcccCCCCCCCCcccccCCCCCCCCCCCCC
Q 000323 500 SGQHETLGNEFDLSKHVSGNMHLA-PT---STHQMQSGYVGYNQGGYDSSMQCINGDLQNFSHEHENGQNLGSEPCSEQD 575 (1669)
Q Consensus 500 ~~~~~~~~~g~~~~~~~~~~~~~~-p~---~~~~~~~~~~~~n~~~~~s~~~~~~~~~~~~~~~h~~g~nlg~~~~~~~~ 575 (1669)
-+.| --+|++-++- ++++ |+ ++|..+.+|++. .++.+..-|+|+|. |..+
T Consensus 401 ~~~p--ts~~~~~Lps----v~~a~~sn~~~sh~~n~E~vv~-----------------~~~~~~~v~~np~~---s~~g 454 (753)
T KOG4839|consen 401 AYIP--TSIEFNILPS----VKFADPSNDNPSHIVNTESVVM-----------------PWQAVQDVKTNPDL---SAVG 454 (753)
T ss_pred ccCC--cchhhcccCC----CcccccccCCcccccccceecc-----------------CCchhhhhccCCch---hhcc
Confidence 5532 2566655544 2233 44 899999999976 55556668999996 8899
Q ss_pred CCccCcCccCccccccCCCCCCcccCCCcchhhhhccCcccccccchhhhhhhHhhhhccccccccccccccccCCCchH
Q 000323 576 ASTSELLPRKSKNALNGISPQSNELMVSADEEEEACQLDLESVQPNFEYQQKDQIAEGRQISTDYRHNNKLSAVSSQDPL 655 (1669)
Q Consensus 576 astse~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~he~~~~~~~~~~~~~~~~~r~~~~~~~~n~~~s~~~~qd~l 655 (1669)
||||..+|+.++.++.+++.| +..+ .|.++++||+++
T Consensus 455 as~s~a~t~~s~~te~rLeap-----~l~~--te~iav~heEHp------------------------------------ 491 (753)
T KOG4839|consen 455 ASASKACTDESLATEERLEAP-----LLLY--TEMIAVHHEEHP------------------------------------ 491 (753)
T ss_pred ccccccCCCcchhHHHHHhcc-----ccCc--cccccchhhhhh------------------------------------
Confidence 999999999999999999999 4444 788999998522
Q ss_pred HHHHhhhHHHHHHhccccccCCCCCCCCcCCccccccccccccccccccCCCcCCCccccccccCCCCCCccccccCCcc
Q 000323 656 LLEATLRSELFARLGMRTFSKDSGSCFNVEPSVEQRADNDIGSDKMQMSNGSVPSSGEQSQQHDIGGTDKPERRIQEAPF 735 (1669)
Q Consensus 656 llea~lrs~lf~r~g~r~~~~~~~~~~~~e~~~~~~~e~~~g~~~~q~~~~~~~~~~~~~~~~dl~~n~~~e~~~~~~~~ 735 (1669)
|.+|+.+|+|||++..+..+ .|++.|+.+.+++| .|.+.+|+.- |=|-+ ++ |...++..+.++++
T Consensus 492 ---a~~~~~~~d~l~~l~Es~~g-~c~~~etlV~~~~e--~~~~~~~R~k--v~L~~-----~e--Gk~n~q~~p~e~~~ 556 (753)
T KOG4839|consen 492 ---AERYEAAMDLLKSLLESCPG-NCQLLETLVALYLE--TNQHDKARAK--VWLTA-----FE--GKKNPQNAPVEYHM 556 (753)
T ss_pred ---HHHHHHHHHHHHHHHhcCCc-cchhHHHHHHHHhh--hcchhhhhhH--HHHHh-----hh--ccCCccCCcccchh
Confidence 89999999999999999988 99999999999998 8888888772 11222 23 55577777778777
Q ss_pred ccccchhhccCccccccccCCCCCCCCcccccccccccchhhhhhhhhhhhhhhhhhcccccCCcccCCCccccchhhhh
Q 000323 736 QIQDKCLVEKGLLEFHSTYHSKGNKFPTTMNHSTSVLLSPPILRGAFGHLKSELCIALSNQSGNQHNHGRNFEIEEVACV 815 (1669)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~h~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1669)
.. ..|++|.. +.++|+.- .+.+++++.|.||++..|.|+ | +|++.+| +.++-++. |-
T Consensus 557 ~~---~sI~ens~---------~~d~~s~r-ilss~s~~~Pgf~~t~~~dkv--p-~l~~~~g------P~yi~~~~-~y 613 (753)
T KOG4839|consen 557 CK---FSILENSG---------DNDLPSLR-ILSSASFFKPGFEKTNNLDKV--P-YLLNIPG------PIYIPSRL-CY 613 (753)
T ss_pred HH---HHHHhccc---------cccchhhh-hhhhhhhcCCcccccchhhhc--c-hhhcCCC------chhhhhhh-cc
Confidence 66 66777765 55666543 578899999999999999999 6 7889977 44444322 22
Q ss_pred ccccccccceeccCCCCccccccccccccccccCCCCCCCcceeecccc-cccCCCCcchhhhcccccc--cccccCCCC
Q 000323 816 NSDKTQACYLIANSKPDIVKGYVGKEMGSYTCNLAIDPLWPLCMYELRG-KCNNDECPWQHVKYFADRN--KNLHDDSDS 892 (1669)
Q Consensus 816 ~sd~~~~~~~~~~~~~~~~~~~~~~~~~s~t~s~~idp~~~lC~fel~G-~CNd~~C~wQH~~d~~~~~--q~~~d~s~~ 892 (1669)
. +..+.+++. +|.+ ..++.-+|+..+|||+|+||+||++| .||+|+|.|||++|+..++ +..|+
T Consensus 614 ~--~r~~~~f~e------~Vpy-~~~i~~y~~~lk~~p~~~~c~YE~~ggrCn~d~c~w~hf~df~~~g~~~~~~~---- 680 (753)
T KOG4839|consen 614 G--NRDDDMFNE------QVPY-LWLIYCYCHPLKSSPKETVCAYEAAGGRCNIDQCIWMHFLDFANNGRAAGSRN---- 680 (753)
T ss_pred c--chhhHHHhh------hhhh-HhhhheecccccCCcchhHHHHHhccCccCchhhhHHHHHHhhcccchhhhcC----
Confidence 1 566777765 5666 44566666677999999999999997 9999999999999999997 44444
Q ss_pred CCCCCCCCcccccccccccccccccccCCCccccccccccchhhhhhhhhhhccCccccccccccccccccCC
Q 000323 893 AGCQIGSTIPQEHCNVGTKLSKGHDILTPPTYIVGLDILKADSYQYQSVIARRHGLCWQKCLSVSLAISSIYP 965 (1669)
Q Consensus 893 ~~~~~~s~~~e~~~~~~~k~~k~~~~l~~pty~v~~d~m~~D~~~~k~~r~~r~~~~wqK~~s~s~a~s~~~q 965 (1669)
..-..+..-++++++.. |.+...++++.|||.+..|.|++|.+.|.+|.+-++++-|.|+++++.|.+.+..
T Consensus 681 ~~~r~~~~td~v~~~s~-k~~~~ldivfs~td~~s~~~~~vdf~~~~~v~~~~H~~~w~~~~s~~pa~s~s~~ 752 (753)
T KOG4839|consen 681 KVQRFKFFTDLVNRCSV-KVPARLDIVFSSTDYWSYEFHRVDFFYLSCVPKTQHSKTWERFCSVMPANSGSAL 752 (753)
T ss_pred chhhhcccchhhhhccc-ccccccccccccccccccccceeeEEEEeeeeHHHHhHHHHHHHhhccccccccc
Confidence 33444455566655554 6888999999999999999999999999999999999999999999999887653
No 2
>KOG4839 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.4e-41 Score=395.86 Aligned_cols=567 Identities=19% Similarity=0.240 Sum_probs=441.9
Q ss_pred cccccccccCCCCCCCcceeecccccccCCCCcchhhhcccccccccccC-C---CCCCCCCCCCccccccccccccccc
Q 000323 840 KEMGSYTCNLAIDPLWPLCMYELRGKCNNDECPWQHVKYFADRNKNLHDD-S---DSAGCQIGSTIPQEHCNVGTKLSKG 915 (1669)
Q Consensus 840 ~~~~s~t~s~~idp~~~lC~fel~G~CNd~~C~wQH~~d~~~~~q~~~d~-s---~~~~~~~~s~~~e~~~~~~~k~~k~ 915 (1669)
++.+++++|++|.|.+++|.|+++|+||+++|.|||..|++|++.+|+|+ + +++||.+.++-+++.+++ +|+
T Consensus 38 ~d~~~~~qsn~I~P~~~p~tF~~t~~~~p~~~d~~~it~~~ls~~~F~~~~~~~~sl~~~a~t~~~~~~taSS----ekt 113 (753)
T KOG4839|consen 38 LDLSSVSQSNMIEPDQCPCTFDLTGTCNPDDCDWQHITDYTLSRKLFQDILSYNLSLIGCAETSTNEEITASS----EKT 113 (753)
T ss_pred CCCccccccccCCCccCCcccccccCCCCcccccccccccccChhhhhhhhhcChhhhcCcccCCccccccch----hhh
Confidence 67899999999999999999999999999999999999999999999999 4 889999999999998777 899
Q ss_pred ccccCCCccccccccccchhhh-------------------hhhhhhhccCccccccccccccccccCCCCCCcccccCC
Q 000323 916 HDILTPPTYIVGLDILKADSYQ-------------------YQSVIARRHGLCWQKCLSVSLAISSIYPKDLPADLSLIG 976 (1669)
Q Consensus 916 ~~~l~~pty~v~~d~m~~D~~~-------------------~k~~r~~r~~~~wqK~~s~s~a~s~~~q~~~p~~~~~~~ 976 (1669)
+.|+ |+++.|+|.|||+. ||+.|+|+| ++|+|+.++++-+++.+|+.+|.+++.-+
T Consensus 114 vsK~----~~~~e~~~~~n~nk~~~~s~~~~ss~~~~~~q~~Kd~r~~K~-t~~rrp~~~ssdT~~~e~se~pkk~~~~s 188 (753)
T KOG4839|consen 114 VSKL----FGVNEDRMSMNQNKVLLVSNINESSGHTPPFQTYKDKRKWKP-TFWRRPISDSSDTSDEEQSEGPKKYAFQS 188 (753)
T ss_pred HHhh----hCCchhhhccchHHHHHHHhhhhcccCCCCccchhhhccCCC-cccccccccccccchhcccccchhhhccC
Confidence 9999 99999999999998 999999999 79999999999999999999999997777
Q ss_pred CCcceec--CCc--cccccccccchhhhhhhhhccchH----HHHHHHHHHHhcccc-cchhhHHH----HHHHH--HHH
Q 000323 977 DGRIECI--GSW--NRQSSFFRSRNGVLNKLKQVELSN----EQCVEMALLILNQDA-NKLEGMKK----ALSLL--SRA 1041 (1669)
Q Consensus 977 d~ri~~~--~~~--~~~~rYF~~~~d~i~~le~~~~d~----qlWLelAl~~Lnq~~-n~~g~ydA----ALdLL--srA 1041 (1669)
+..|.++ |++ +++++| .+++|++.+||++|..+ |+|++.|.++|++.+ +.+...++ |+++| .|+
T Consensus 189 ~~~~~~p~~D~~vt~~~~~~-~ne~d~~~~le~gV~~N~s~~~l~~ks~v~~l~~~eG~~SsS~~sqgsl~ln~~kaaR~ 267 (753)
T KOG4839|consen 189 ENQINVPALDTVVTPDDVRY-TNETDDIANLEAGVLENPSHVQLWLKSAVKYLNQNEGECSSSLDSQGSLALNVLKAARA 267 (753)
T ss_pred cccccCccccceeccccccc-ccchhHHHhhccccccChHHHhhccchhhhhhhhhcCccchhhhccccceeehhhhhhH
Confidence 7766666 665 999999 89999999999999887 999999999999977 66777777 99999 999
Q ss_pred HHhCC-CCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCC
Q 000323 1042 LEADP-TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD 1120 (1669)
Q Consensus 1042 LEINP-tSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~D 1120 (1669)
||.+. ++++.|++|+.++. |++....+|+..|+++-| .|.=||.|..-+.++..+.++++...++++.+.+.. .
T Consensus 268 le~~KiD~~~s~~h~L~~~n--Gt~~v~~e~~n~~~~~lp-~~~~~~~~~~p~st~~p~~~v~e~~~~~~~g~dk~~--~ 342 (753)
T KOG4839|consen 268 LENNKIDNPESWCHYLRLFN--GTKDVVQEMCNTAVEYLP-DYQSFWTFLHPESTFEPKDYVCERMLEFLMGADKQE--T 342 (753)
T ss_pred HhhccCCCccchhheeeccC--CChhHHHHhhhhhhhccc-ccccchhccCCCCcCCcchhhHhhhhhhhhccchhh--h
Confidence 99999 99999999999975 777789999999999997 677788999999999998889999999998777766 3
Q ss_pred cchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHH-HHHhhccc
Q 000323 1121 EMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY-LVIYRKLP 1199 (1669)
Q Consensus 1121 r~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iY-llrYrvLP 1199 (1669)
...+|++++|+++.-+++-..+|+-..+++ |+++|.+..+. .|+ ..||...|+|.+|..+++ .+.+-.||
T Consensus 343 ~~~~s~~llE~~~~n~~~~~~~~~rs~~lA----~lrnae~~~~r-~~~----~~~Li~rd~~l~wp~~~pts~~~~~Lp 413 (753)
T KOG4839|consen 343 SNILSFQLLEALLFNVQLHIFTGRRSSALA----ILRNAEKSANR-GIV----AEYLITRDRCLAWPAYIPTSIEFNILP 413 (753)
T ss_pred HHHHHHHHhhhchhhhhhhhhhhhhhHHHH----HHHhhHHHhhh-chh----hhhheehhhhhcccccCCcchhhcccC
Confidence 467999999999999999999999888888 66666555443 333 789999999999999999 89999999
Q ss_pred h-HHHhhhh------hhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHH--HHHHHH
Q 000323 1200 D-AVLQLLE------CEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAV--NHIWCM 1270 (1669)
Q Consensus 1200 G-d~y~q~e------~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKL--N~IR~l 1270 (1669)
. .+++..+ ..-|-+-.+|+.++.++.+|+ ..++...|.+.+. +++++-+ .++..+..+ ++|...
T Consensus 414 sv~~a~~sn~~~sh~~n~E~vv~~~~~~~~v~~np~-~s~~gas~s~a~t----~~s~~te--~rLeap~l~~te~iav~ 486 (753)
T KOG4839|consen 414 SVKFADPSNDNPSHIVNTESVVMPWQAVQDVKTNPD-LSAVGASASKACT----DESLATE--ERLEAPLLLYTEMIAVH 486 (753)
T ss_pred CCcccccccCCcccccccceeccCCchhhhhccCCc-hhhccccccccCC----CcchhHH--HHHhccccCccccccch
Confidence 8 8888777 356778899999999999999 5555443333332 3444433 233222222 332222
Q ss_pred HH---hcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccH-HHHHHHHH--hCCCCCc--hHHHHHHHHHHH
Q 000323 1271 AV---LNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSS-VGFEEALI--KWPKGVP--GIQCIWNQYVEY 1340 (1669)
Q Consensus 1271 I~---LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~-svle~AL~--~~PkNa~--g~~caW~QLIq~ 1340 (1669)
.. .+.-+++++++..+++.||-.|.+ .|++.|++... -..+| .+|.++++ .+|.+.+ +++|.+--+=.-
T Consensus 487 heEHpa~~~~~~~d~l~~l~Es~~g~c~~~etlV~~~~e~~~-~~~~R~kv~L~~~eGk~n~q~~p~e~~~~~~sI~ens 565 (753)
T KOG4839|consen 487 HEEHPAERYEAAMDLLKSLLESCPGNCQLLETLVALYLETNQ-HDKARAKVWLTAFEGKKNPQNAPVEYHMCKFSILENS 565 (753)
T ss_pred hhhhhHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHhhhcc-hhhhhhHHHHHhhhccCCccCCcccchhHHHHHHhcc
Confidence 11 346788999999999999999999 99999988654 56677 49999999 8898888 888887322111
Q ss_pred HHHcCChHHHHHHHHHHHHhhhhcccccccchhhhccc-CCCCCCC-----CCCCCCcccccccccchhhHHHHHHH--H
Q 000323 1341 ALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVAD-MSHSSPE-----STSTSDPEFSVSNRNQMDVMFGYLNL--S 1412 (1669)
Q Consensus 1341 al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkg-ns~i~~e-----s~s~~vSDfy~~~~~Q~d~~fa~LGD--~ 1412 (1669)
+ +.++..-. |. +-.++..-..+....+|-+... +.+++.. .-++..-|.+ ..|+ .|++. |
T Consensus 566 ~--~~d~~s~r-il--ss~s~~~Pgf~~t~~~dkvp~l~~~~gP~yi~~~~~y~~r~~~~f---~e~V----py~~~i~~ 633 (753)
T KOG4839|consen 566 G--DNDLPSLR-IL--SSASFFKPGFEKTNNLDKVPYLLNIPGPIYIPSRLCYGNRDDDMF---NEQV----PYLWLIYC 633 (753)
T ss_pred c--cccchhhh-hh--hhhhhcCCcccccchhhhcchhhcCCCchhhhhhhcccchhhHHH---hhhh----hhHhhhhe
Confidence 1 11222211 11 1112222233444455544422 2222111 0112233333 3444 77777 5
Q ss_pred HHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHh
Q 000323 1413 LHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLL 1452 (1669)
Q Consensus 1413 L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS 1452 (1669)
|..-|+-...+.+-+||.+.+-= ++ ..-.|..|..|-.
T Consensus 634 y~~~lk~~p~~~~c~YE~~ggrC-n~-d~c~w~hf~df~~ 671 (753)
T KOG4839|consen 634 YCHPLKSSPKETVCAYEAAGGRC-NI-DQCIWMHFLDFAN 671 (753)
T ss_pred ecccccCCcchhHHHHHhccCcc-Cc-hhhhHHHHHHhhc
Confidence 66667899999999999999622 22 2345777777754
No 3
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.93 E-value=4.4e-24 Score=253.68 Aligned_cols=321 Identities=18% Similarity=0.208 Sum_probs=273.1
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHH
Q 000323 1028 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAAL 1107 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI 1107 (1669)
.+.++-|..+|+|+|.++|..-.+|...+.+...+++.++....|++||+++|....||+||.+.+|.- +++ ..|+
T Consensus 529 ~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~a-gdv---~~ar 604 (913)
T KOG0495|consen 529 RPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKA-GDV---PAAR 604 (913)
T ss_pred cchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhc-CCc---HHHH
Confidence 345689999999999999999999999999999999999999999999999999999999999999987 445 8999
Q ss_pred HHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhH
Q 000323 1108 SVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWV 1187 (1669)
Q Consensus 1108 ~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL 1187 (1669)
.+|.+++..+ |.. +||||+.++|+..+..++.|.. |++.|.. .++ ..| .|+
T Consensus 605 ~il~~af~~~-pns-------eeiwlaavKle~en~e~eraR~----llakar~-~sg--------------TeR--v~m 655 (913)
T KOG0495|consen 605 VILDQAFEAN-PNS-------EEIWLAAVKLEFENDELERARD----LLAKARS-ISG--------------TER--VWM 655 (913)
T ss_pred HHHHHHHHhC-CCc-------HHHHHHHHHHhhccccHHHHHH----HHHHHhc-cCC--------------cch--hhH
Confidence 9999999999 455 9999999999999999999988 6653333 222 445 899
Q ss_pred HHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHH
Q 000323 1188 CCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHI 1267 (1669)
Q Consensus 1188 ~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~I 1267 (1669)
+++++.+|.-.- +.+..|.+-|+..|- .+.|+=+|
T Consensus 656 Ks~~~er~ld~~----------------------------eeA~rllEe~lk~fp-----------------~f~Kl~lm 690 (913)
T KOG0495|consen 656 KSANLERYLDNV----------------------------EEALRLLEEALKSFP-----------------DFHKLWLM 690 (913)
T ss_pred HHhHHHHHhhhH----------------------------HHHHHHHHHHHHhCC-----------------chHHHHHH
Confidence 999998887652 566666676544443 56666443
Q ss_pred --HHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhccc-CCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHc
Q 000323 1268 --WCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDF-GDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQN 1344 (1669)
Q Consensus 1268 --R~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m-~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~ 1344 (1669)
+++...++.+.|+..|...++.||.|+.|||..+.|+++.+ +..|+.+|+++...+|+|+. .|...|+++++.
T Consensus 691 lGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~----lwle~Ir~ElR~ 766 (913)
T KOG0495|consen 691 LGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNAL----LWLESIRMELRA 766 (913)
T ss_pred HhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcch----hHHHHHHHHHHc
Confidence 33334779999999999999999999999999999999885 88999999999999999999 888889999999
Q ss_pred CChHHHHHHHHHHHHhhhhccc-------------ccccchhhhccc-CCCCCCCCCCCCCcccccccccchhhHHHHHH
Q 000323 1345 GRHDFAAELMDRWFHSVWKVQY-------------SQVEISDPLVAD-MSHSSPESTSTSDPEFSVSNRNQMDVMFGYLN 1410 (1669)
Q Consensus 1345 en~d~Ai~Lc~~ff~gia~~Q~-------------~~deALDaLrkg-ns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LG 1410 (1669)
|+.+.|..++.+.++.++.++. ++..++|+|++. +.|- .+|.
T Consensus 767 gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dph------------------------Vlla 822 (913)
T KOG0495|consen 767 GNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPH------------------------VLLA 822 (913)
T ss_pred CCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCch------------------------hHHH
Confidence 9999999999998888887775 888999999987 4442 5778
Q ss_pred HHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCC
Q 000323 1411 LSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINES 1456 (1669)
Q Consensus 1411 D~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~ 1456 (1669)
.+..+|.+.++++|.+||++|++.+|++ =.+|-.+--|-...|+
T Consensus 823 ia~lfw~e~k~~kar~Wf~Ravk~d~d~--GD~wa~fykfel~hG~ 866 (913)
T KOG0495|consen 823 IAKLFWSEKKIEKAREWFERAVKKDPDN--GDAWAWFYKFELRHGT 866 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCcc--chHHHHHHHHHHHhCC
Confidence 8888888999999999999999999998 6777666666556553
No 4
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.87 E-value=6.4e-19 Score=212.15 Aligned_cols=379 Identities=15% Similarity=0.030 Sum_probs=275.4
Q ss_pred hHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----
Q 000323 1009 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---- 1084 (1669)
Q Consensus 1009 d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~---- 1084 (1669)
+.+.++..|..+++++ +++.|+..|+++++++|.++++|+.++.+|...++-+++..+|++|++..|++..
T Consensus 21 ~~~~~~~~a~~~~~~~-----~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 95 (899)
T TIGR02917 21 SPESLIEAAKSYLQKN-----KYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPL 95 (899)
T ss_pred CHHHHHHHHHHHHHcC-----ChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHH
Confidence 4567888888888874 5799999999999999999999999999999999999999999999999998765
Q ss_pred HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCC
Q 000323 1085 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND 1164 (1669)
Q Consensus 1085 LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~s 1164 (1669)
++..|...+ .|++|+..+.+.....++.. .+++..+...|...|++++|+..+.++.. .....
T Consensus 96 ~a~~~~~~g--------~~~~a~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~ 158 (899)
T TIGR02917 96 LARAYLLQG--------KFQQVLDELPGKTLLDDEGA-------AELLALRGLAYLGLGQLELAQKSYEQALA--IDPRS 158 (899)
T ss_pred HHHHHHHCC--------CHHHHHHhhcccccCCchhh-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC
Confidence 677788888 88999999976654332333 67889999999999999999998888775 22223
Q ss_pred cccchHHHHHHhhccCCcchh--hHHHH---H--HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHH
Q 000323 1165 RHSLFLSDILTCLTISDKLIF--WVCCV---Y--LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMA 1237 (1669)
Q Consensus 1165 E~~lSLsKi~~YLt~sDR~~A--WL~~i---Y--llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA 1237 (1669)
. ...+.....++..++-..| ++... . ......+.|.++...|...+|... +.++++.+|++...++.+|
T Consensus 159 ~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~---~~~a~~~~p~~~~~~~~~~ 234 (899)
T TIGR02917 159 L-YAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAA---YRKAIALRPNNPAVLLALA 234 (899)
T ss_pred h-hhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHH---HHHHHhhCCCCHHHHHHHH
Confidence 3 4455556666666665444 22222 1 233455678889999999999998 8899999999988888876
Q ss_pred HHHHhhhcCCcchhhhhhhchhhHhH----HHHHHHH--HHhcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhhcccCC
Q 000323 1238 VNSVELYSNGESLEKETNLRSAHCFA----VNHIWCM--AVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGD 1310 (1669)
Q Consensus 1238 ~dYY~~~~ndesla~~~~~kt~~~fK----LN~IR~l--I~LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~K~m~~ 1310 (1669)
.-++. .|+-+.+...-.++....| ..+++.+ ...++.+.|+.+|.++++..|..... .+.+..+...+..+
T Consensus 235 ~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~ 312 (899)
T TIGR02917 235 TILIE--AGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLE 312 (899)
T ss_pred HHHHH--cCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHH
Confidence 44544 4444433332111111111 1112222 23679999999999999999998776 33333223333377
Q ss_pred ccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHH------------Hhhhhccc-ccccchhhhcc
Q 000323 1311 LSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWF------------HSVWKVQY-SQVEISDPLVA 1377 (1669)
Q Consensus 1311 ~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff------------~gia~~Q~-~~deALDaLrk 1377 (1669)
+|+..|++++...|++.. ++..++......|++++|+.++.+.. .+..+... +.++|++.+++
T Consensus 313 ~A~~~~~~~~~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 388 (899)
T TIGR02917 313 QAYQYLNQILKYAPNSHQ----ARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAK 388 (899)
T ss_pred HHHHHHHHHHHhCCCChH----HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 899999999999999988 78888899999999999999988732 23333333 77888888876
Q ss_pred cCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCC
Q 000323 1378 DMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1438 (1669)
Q Consensus 1378 gns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N 1438 (1669)
.....+ . ..+++ ..++.++.. .|++++|...|+++++..|..
T Consensus 389 ~~~~~~-----~-~~~~~-----------~~l~~~~~~--~~~~~~A~~~~~~a~~~~~~~ 430 (899)
T TIGR02917 389 ATELDP-----E-NAAAR-----------TQLGISKLS--QGDPSEAIADLETAAQLDPEL 430 (899)
T ss_pred HHhcCC-----C-CHHHH-----------HHHHHHHHh--CCChHHHHHHHHHHHhhCCcc
Confidence 532211 0 12222 556677777 899999999999999888876
No 5
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.85 E-value=1.3e-17 Score=200.94 Aligned_cols=412 Identities=13% Similarity=0.021 Sum_probs=278.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHH
Q 000323 1029 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1104 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~Yd 1104 (1669)
|+++.|+..|..+++.+|+...+++.++.+|...+.-.++..+|+++++..|.+.. ++.+|+..+ .++
T Consensus 275 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g--------~~~ 346 (899)
T TIGR02917 275 KNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLG--------RVD 346 (899)
T ss_pred cCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCC--------CHH
Confidence 56788888888888888888888888888888888888888888888888887765 556677777 778
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcch
Q 000323 1105 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLI 1184 (1669)
Q Consensus 1105 kAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~ 1184 (1669)
+|+..|.++.... +.. .+++..+..+|...|++++|+..+.+... ..-.+. .........|+..++...
T Consensus 347 ~A~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~~~~l~~~~~~~~~~~~ 415 (899)
T TIGR02917 347 EAIATLSPALGLD-PDD-------PAALSLLGEAYLALGDFEKAAEYLAKATE--LDPENA-AARTQLGISKLSQGDPSE 415 (899)
T ss_pred HHHHHHHHHHhcC-CCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCH-HHHHHHHHHHHhCCChHH
Confidence 8888888887776 343 67788888889999999999987777664 221122 223333445555555543
Q ss_pred h--hHHHHH-----HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhc
Q 000323 1185 F--WVCCVY-----LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLR 1257 (1669)
Q Consensus 1185 A--WL~~iY-----llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~k 1257 (1669)
| .+.... ........+..|...|..+++..+ +....+..|+++.....+|.-|.. .|+-..+...-.+
T Consensus 416 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~---~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~ 490 (899)
T TIGR02917 416 AIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAA---AKKLEKKQPDNASLHNLLGAIYLG--KGDLAKAREAFEK 490 (899)
T ss_pred HHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHH---HHHHHHhCCCCcHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 3 111111 111223345667778888888887 777777788877777777533443 4444433333222
Q ss_pred hhhHh------HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHH-hhcccCCccHHHHHHHHHhCCCCCchH
Q 000323 1258 SAHCF------AVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARL-QKHDFGDLSSVGFEEALIKWPKGVPGI 1330 (1669)
Q Consensus 1258 t~~~f------KLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL-~~K~m~~~A~svle~AL~~~PkNa~g~ 1330 (1669)
+.... -.++.+.+...++.+.|+.+|+++++.+|.++..+...+.+ ...+..++|+..|++++...|++..
T Consensus 491 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-- 568 (899)
T TIGR02917 491 ALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIE-- 568 (899)
T ss_pred HHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchh--
Confidence 11111 11334444457789999999999999999998883333332 2333478889999999999999888
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH------------hhhhccc-ccccchhhhcccCCCCCCCCCCCCCcccccc
Q 000323 1331 QCIWNQYVEYALQNGRHDFAAELMDRWFH------------SVWKVQY-SQVEISDPLVADMSHSSPESTSTSDPEFSVS 1397 (1669)
Q Consensus 1331 ~caW~QLIq~al~~en~d~Ai~Lc~~ff~------------gia~~Q~-~~deALDaLrkgns~i~~es~s~~vSDfy~~ 1397 (1669)
.|..++......|++++|+.++++... +..+... +.++|++.+++.....+. ....
T Consensus 569 --~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~--- 637 (899)
T TIGR02917 569 --PALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD------SALA--- 637 (899)
T ss_pred --HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChHH---
Confidence 888889999999999999999887332 2222222 777888888765322110 0122
Q ss_pred cccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHH------
Q 000323 1398 NRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLL------ 1471 (1669)
Q Consensus 1398 ~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~~~KtV------ 1471 (1669)
+..++.++.+ .|++++|...|+++++.+|++ ..++...+..+...+ +.++|..+-. ++.
T Consensus 638 --------~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~-~~~~A~~~~~--~~~~~~~~~ 702 (899)
T TIGR02917 638 --------LLLLADAYAV--MKNYAKAITSLKRALELKPDN--TEAQIGLAQLLLAAK-RTESAKKIAK--SLQKQHPKA 702 (899)
T ss_pred --------HHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcC-CHHHHHHHHH--HHHhhCcCC
Confidence 2678888888 999999999999999999998 778888887776544 4666655333 222
Q ss_pred -HHHHhhhcccccccc--cchhhh
Q 000323 1472 -NSYLDRARSLPYLKL--LPRQFI 1492 (1669)
Q Consensus 1472 -sTYLDTAWILf~~~~--lARiYI 1492 (1669)
..|..-+++++..+. +|..+.
T Consensus 703 ~~~~~~~~~~~~~~g~~~~A~~~~ 726 (899)
T TIGR02917 703 ALGFELEGDLYLRQKDYPAAIQAY 726 (899)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHH
Confidence 122222677777777 555555
No 6
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.77 E-value=5.3e-15 Score=193.18 Aligned_cols=589 Identities=10% Similarity=0.002 Sum_probs=363.3
Q ss_pred cccccccccch--hhhh----h-hhhccchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHH-------
Q 000323 987 NRQSSFFRSRN--GVLN----K-LKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILW------- 1052 (1669)
Q Consensus 987 ~~~~rYF~~~~--d~i~----~-le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaW------- 1052 (1669)
-+|+||..... |... + +.-.|.+.+.+..++...+.++ +++.|...|.++++++|+++.++
T Consensus 32 l~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g-----~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~ 106 (1157)
T PRK11447 32 LEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQG-----DSDGAQKLLDRLSQLAPDSNAYRSSRTTML 106 (1157)
T ss_pred HHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 36667766333 2222 2 2234456688888877777664 56999999999999999999986
Q ss_pred ---------HHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcch
Q 000323 1053 ---------ITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMH 1123 (1669)
Q Consensus 1053 ---------y~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~ 1123 (1669)
..++.++...+..+++...|+++++.+|++..+...|...-....+ .+++|+..|+++.+.+ |+.
T Consensus 107 ~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g---~~~~A~~~L~~ll~~~-P~~-- 180 (1157)
T PRK11447 107 LSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPA---QRPEAINQLQRLNADY-PGN-- 180 (1157)
T ss_pred hcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCc---cHHHHHHHHHHHHHhC-CCC--
Confidence 4556678888999999999999999999998866655543211222 5699999999999998 565
Q ss_pred hhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCC-c------------ccchHHHHHHhhccCCcch-hhHHH
Q 000323 1124 ASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND-R------------HSLFLSDILTCLTISDKLI-FWVCC 1189 (1669)
Q Consensus 1124 ~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~s-E------------~~lSLsKi~~YLt~sDR~~-AWL~~ 1189 (1669)
.++.+.+..++...|+++.|+..+.++......... . ..-.+..+..|+..-.... +--+.
T Consensus 181 -----~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~ 255 (1157)
T PRK11447 181 -----TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAAR 255 (1157)
T ss_pred -----HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHH
Confidence 789999999999999999999999887641100000 0 0001111222222111100 00000
Q ss_pred HHH---------HHh-hccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchh
Q 000323 1190 VYL---------VIY-RKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSA 1259 (1669)
Q Consensus 1190 iYl---------lrY-rvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~ 1259 (1669)
..+ ..| ..+.|..+...|...+|... +.++++.+|+++.++..+|.-|+. .++-..+...-.++.
T Consensus 256 ~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~---l~~aL~~~P~~~~a~~~Lg~~~~~--~g~~~eA~~~l~~Al 330 (1157)
T PRK11447 256 SQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPE---LQQAVRANPKDSEALGALGQAYSQ--QGDRARAVAQFEKAL 330 (1157)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHH---HHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHH
Confidence 000 001 12347788888999999999 999999999999999999755555 455444444422222
Q ss_pred hHhHH--------------------HHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHH
Q 000323 1260 HCFAV--------------------NHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFE 1317 (1669)
Q Consensus 1260 ~~fKL--------------------N~IR~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle 1317 (1669)
...|- .....+...++.++|+.+|.++++..|.+... .|...|+..+ ..++|+..|+
T Consensus 331 ~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g-~~~eA~~~y~ 409 (1157)
T PRK11447 331 ALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARK-DYAAAERYYQ 409 (1157)
T ss_pred HhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHH
Confidence 22211 11112233669999999999999999999988 3444444444 4889999999
Q ss_pred HHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHH---------------------Hhhhh-cccccccchhhh
Q 000323 1318 EALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWF---------------------HSVWK-VQYSQVEISDPL 1375 (1669)
Q Consensus 1318 ~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff---------------------~gia~-~Q~~~deALDaL 1375 (1669)
+|+.++|++.. +|..+..... .++.++|+..+..+- ++-.+ .+.+.++|+..+
T Consensus 410 ~aL~~~p~~~~----a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~ 484 (1157)
T PRK11447 410 QALRMDPGNTN----AVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQ 484 (1157)
T ss_pred HHHHhCCCCHH----HHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999998 7777776654 568898887765421 11111 123778888888
Q ss_pred cccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCC
Q 000323 1376 VADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINE 1455 (1669)
Q Consensus 1376 rkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~ 1455 (1669)
++....-+. ...++ -.++.+|++ .|++++|...|+++++..|.+ ...+..++.|+...+
T Consensus 485 ~~Al~~~P~------~~~~~-----------~~LA~~~~~--~G~~~~A~~~l~~al~~~P~~--~~~~~a~al~l~~~~ 543 (1157)
T PRK11447 485 RQRLALDPG------SVWLT-----------YRLAQDLRQ--AGQRSQADALMRRLAQQKPND--PEQVYAYGLYLSGSD 543 (1157)
T ss_pred HHHHHhCCC------CHHHH-----------HHHHHHHHH--cCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHhCC
Confidence 876332110 01222 567778888 999999999999999999988 677777787765433
Q ss_pred CCCCcccc-------------hhhhHHHH--HHHHhhhcccccccc--cchhhhccccchhhHHHHhhhcCCCCCChhhH
Q 000323 1456 SEPKEGAP-------------ISWQLKLL--NSYLDRARSLPYLKL--LPRQFINNIERPRLQQLIDNLLSPVSSDFSLV 1518 (1669)
Q Consensus 1456 ~dL~KAeq-------------MS~~~KtV--sTYLDTAWILf~~~~--lARiYI~~i~k~rv~~liDqaL~~~S~dss~~ 1518 (1669)
. .++|.. |......+ ..+|..|.++...++ +|..++ . ..|.+ ...
T Consensus 544 ~-~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l------------~--~~p~~---~~~ 605 (1157)
T PRK11447 544 R-DRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL------------R--QQPPS---TRI 605 (1157)
T ss_pred C-HHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH------------H--hCCCC---chH
Confidence 2 222211 11000000 122333444445544 444444 1 11211 111
Q ss_pred HHHHhhccCCCCcccccccccchhHHHHHHHhhcCcchhhHHHHHHHhhccCCCCCCCCCchhHHHHHhhhhhhhhhccC
Q 000323 1519 NLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNKDHNPNITDAVPESVLFWASSSLVSAIFHAV 1598 (1669)
Q Consensus 1519 nkALE~W~g~slLpqKI~~kKyi~dfVE~ime~~P~Ny~Lal~v~kll~k~~~~~~~d~~s~~~~fwA~s~l~~ai~~a~ 1598 (1669)
...|-.|+ + +.++...=..+.+.+++.-|.|...-+..+.++....+ ...+..... .+...-
T Consensus 606 ~~~La~~~----~--~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~------~~eA~~~l~------~ll~~~ 667 (1157)
T PRK11447 606 DLTLADWA----Q--QRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGD------LAAARAQLA------KLPATA 667 (1157)
T ss_pred HHHHHHHH----H--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC------HHHHHHHHH------HHhccC
Confidence 12222232 1 11122334567888889999998888888887765444 111221111 111111
Q ss_pred CCCchHHHHHHHHHhhhchhHHHHHHHHHHhhhccccc------hHHHHHHHHhhhcccCChHHHHHHH
Q 000323 1599 PVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPF------SIKLWKCYYDLSKTKGDLNTIVKAA 1661 (1669)
Q Consensus 1599 pvape~vWveaa~~l~~l~~~~~i~~rfy~~AlsvyPf------S~~LW~~y~~~~~~~g~~~~ive~a 1661 (1669)
|- ...+|...|.++..+ |.-+-+..+|++|+...|= .+.+++..-.+....|..+..++.-
T Consensus 668 p~-~~~~~~~la~~~~~~-g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y 734 (1157)
T PRK11447 668 ND-SLNTQRRVALAWAAL-GDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETY 734 (1157)
T ss_pred CC-ChHHHHHHHHHHHhC-CCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 22 224566666666554 4444458899999987652 3457776677778888886555553
No 7
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.73 E-value=1e-14 Score=187.64 Aligned_cols=294 Identities=10% Similarity=-0.034 Sum_probs=215.8
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHH
Q 000323 1028 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAAL 1107 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI 1107 (1669)
.|+++.|+..|.+||+++|+++++++.++.+|+..++..++..++++||+++|.|.++.++....+ .|++|+
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i~--------~~~kA~ 128 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAIP--------VEVKSV 128 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHhc--------cChhHH
Confidence 367899999999999999999999999999999999999999999999999999999877765554 889999
Q ss_pred HHHHHhhhcCCCCcchhhhhhHHHHHHHHHH--------HHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhcc
Q 000323 1108 SVLCRCASASDGDEMHASACILDLFLQMLQC--------FCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTI 1179 (1669)
Q Consensus 1108 ~aLe~las~~~~Dr~~~Sa~iLDILL~LvqL--------Y~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~ 1179 (1669)
.+|+++++.+ |++ .|+++.++.+ |.+.+...+||. .+++. .++... -+.|.+.++|+.+
T Consensus 129 ~~ye~l~~~~-P~n-------~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~--~~~~~~-vL~L~~~rlY~~l 195 (987)
T PRK09782 129 TTVEELLAQQ-KAC-------DAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFA--ASPEGK-TLRTDLLQRAIYL 195 (987)
T ss_pred HHHHHHHHhC-CCC-------hhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhC--CCCCcH-HHHHHHHHHHHHH
Confidence 9999999999 787 9999999998 999988888887 55554 443333 4899999999999
Q ss_pred CCcc-hh----hHHHHH--HHHhhccchHHHhhh-hhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchh
Q 000323 1180 SDKL-IF----WVCCVY--LVIYRKLPDAVLQLL-ECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLE 1251 (1669)
Q Consensus 1180 sDR~-~A----WL~~iY--llrYrvLPGd~y~q~-e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla 1251 (1669)
+|-. .. .|+..+ ...|...++++|+++ +. +++..+ +...++.+|.-..++ +++|.. .|+.+.+
T Consensus 196 ~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al---~~~~lk~d~~l~~al----a~~yi~-~G~~~~A 266 (987)
T PRK09782 196 KQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLAL---QSQGIFTDPQSRITY----ATALAY-RGEKARL 266 (987)
T ss_pred hCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHH---hchhcccCHHHHHHH----HHHHHH-CCCHHHH
Confidence 9943 33 566655 777888899999995 66 888888 666666555555544 356665 7777766
Q ss_pred hhhhhchhhHhHH-------------------------------HHHHHH-------HHhcCHHHHHHHHHHHHHhCCCc
Q 000323 1252 KETNLRSAHCFAV-------------------------------NHIWCM-------AVLNGLECSMNLLEKYIKLYPSC 1293 (1669)
Q Consensus 1252 ~~~~~kt~~~fKL-------------------------------N~IR~l-------I~LEDse~A~~LfdklLk~~P~d 1293 (1669)
...=.+...+++. ++.+-. +..+++..+. +++...|.+
T Consensus 267 ~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 342 (987)
T PRK09782 267 QHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQ----KLLATLPAN 342 (987)
T ss_pred HHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHH----HHhcCCCcc
Confidence 6551122222211 100000 0011333222 345555666
Q ss_pred hhHHHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000323 1294 LELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFH 1359 (1669)
Q Consensus 1294 ~eL~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~ 1359 (1669)
.-+.+-.+++...+.--++...|.......|.+.. .=.|+.=.++++|+.++|.++.+..|.
T Consensus 343 ~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~----~l~q~~~~~~~~~~~~~a~~~~~~~~~ 404 (987)
T PRK09782 343 EMLEERYAVSVATRNKAEALRLARLLYQQEPANLT----RLDQLTWQLMQNGQSREAADLLLQRYP 404 (987)
T ss_pred hHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcccHHHHHHHHHHhcC
Confidence 54455555543323355777888888888898888 666667789999999999999999665
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.68 E-value=6.8e-15 Score=192.21 Aligned_cols=359 Identities=8% Similarity=-0.033 Sum_probs=242.5
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH------------------HHHHH
Q 000323 1028 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA------------------LWLMY 1089 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~------------------LwlmY 1089 (1669)
.|+++.|...|.++|+++|+++++|+.++.+|.+.+..+++.++|++|++.+|++.. ++..+
T Consensus 282 ~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 367899999999999999999999999999999999999999999999999998642 12345
Q ss_pred HhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccch
Q 000323 1090 INSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLF 1169 (1669)
Q Consensus 1090 Insr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lS 1169 (1669)
+..+ .|++|+..|.++.+.. |+. .+.++.|..+|...|++++|++.+.+... +...+. ...
T Consensus 362 ~~~g--------~~~eA~~~~~~Al~~~-P~~-------~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~--~~p~~~-~a~ 422 (1157)
T PRK11447 362 LKAN--------NLAQAERLYQQARQVD-NTD-------SYAVLGLGDVAMARKDYAAAERYYQQALR--MDPGNT-NAV 422 (1157)
T ss_pred HHCC--------CHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCH-HHH
Confidence 5556 7899999999999888 454 67888999999999999999998888775 332222 222
Q ss_pred HHHHHHhhccCCcchh--hHHHH--------------H-HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHH
Q 000323 1170 LSDILTCLTISDKLIF--WVCCV--------------Y-LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIK 1232 (1669)
Q Consensus 1170 LsKi~~YLt~sDR~~A--WL~~i--------------Y-llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalA 1232 (1669)
......|... +...| ++... . .-.| ...+.++...|...+|... +.+.++.+|+++.+
T Consensus 423 ~~L~~l~~~~-~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~-~~~a~~~~~~g~~~eA~~~---~~~Al~~~P~~~~~ 497 (1157)
T PRK11447 423 RGLANLYRQQ-SPEKALAFIASLSASQRRSIDDIERSLQNDRL-AQQAEALENQGKWAQAAEL---QRQRLALDPGSVWL 497 (1157)
T ss_pred HHHHHHHHhc-CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHH-HHHHHHHHHCCCHHHHHHH---HHHHHHhCCCCHHH
Confidence 2222333322 22222 22100 0 0011 1245666677777777777 77777777777777
Q ss_pred HHHHHHHHHhhhcCCcchhhhhhhchhhHhH-------------------------------------------------
Q 000323 1233 LIEMAVNSVELYSNGESLEKETNLRSAHCFA------------------------------------------------- 1263 (1669)
Q Consensus 1233 L~smA~dYY~~~~ndesla~~~~~kt~~~fK------------------------------------------------- 1263 (1669)
++.+|.-|+. .|+...+...-.++....|
T Consensus 498 ~~~LA~~~~~--~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~ 575 (1157)
T PRK11447 498 TYRLAQDLRQ--AGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQ 575 (1157)
T ss_pred HHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhH
Confidence 7777544443 3444333332111111101
Q ss_pred -HHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Q 000323 1264 -VNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYA 1341 (1669)
Q Consensus 1264 -LN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~a 1341 (1669)
+.....+...++.++|+.++. .+|.+..+ ..++..+...+..++|+..|++++..+|+|+. +|+.+++..
T Consensus 576 ~l~~a~~l~~~G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~----a~~~la~~~ 647 (1157)
T PRK11447 576 VLETANRLRDSGKEAEAEALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNAD----ARLGLIEVD 647 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHH
Confidence 111222233446666666554 68999988 44444445555599999999999999999999 999999999
Q ss_pred HHcCChHHHHHHHHH------------HHHhhhhccc-ccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHH
Q 000323 1342 LQNGRHDFAAELMDR------------WFHSVWKVQY-SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGY 1408 (1669)
Q Consensus 1342 l~~en~d~Ai~Lc~~------------ff~gia~~Q~-~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~ 1408 (1669)
...|++++|+..+++ +..+..+.+. +.++|+..+++.....+.......... ++..
T Consensus 648 ~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~-----------~~~~ 716 (1157)
T PRK11447 648 IAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESAL-----------VLRD 716 (1157)
T ss_pred HHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHH-----------HHHH
Confidence 999999999999987 2234434333 888899988876443211100000111 1244
Q ss_pred HHHHHHHhhhcCHHHHHHHHHHHHh
Q 000323 1409 LNLSLHRLLQNDWNEARLAIDAALK 1433 (1669)
Q Consensus 1409 LGD~L~q~Lqg~~~EAfaAYDKALk 1433 (1669)
++.++.. +|+.++|...|.+||.
T Consensus 717 ~a~~~~~--~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 717 AARFEAQ--TGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHH--cCCHHHHHHHHHHHHh
Confidence 5677777 9999999999999996
No 9
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.64 E-value=1.6e-13 Score=165.04 Aligned_cols=406 Identities=19% Similarity=0.173 Sum_probs=264.1
Q ss_pred CCCccccccccccchhhhhhhhhhhccCccccccccccccccccCCCCCCccc--ccCCCCcceec---CCccccccccc
Q 000323 920 TPPTYIVGLDILKADSYQYQSVIARRHGLCWQKCLSVSLAISSIYPKDLPADL--SLIGDGRIECI---GSWNRQSSFFR 994 (1669)
Q Consensus 920 ~~pty~v~~d~m~~D~~~~k~~r~~r~~~~wqK~~s~s~a~s~~~q~~~p~~~--~~~~d~ri~~~---~~~~~~~rYF~ 994 (1669)
..||++-....++--.+++||+|+--|. |...=.|+-..+-..+-... ..+-.|+=+++ |-|=+..|-+-
T Consensus 256 m~p~~~~dl~DikKaR~llKSvretnP~-----hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLhp 330 (913)
T KOG0495|consen 256 MIPTSGGDLEDIKKARLLLKSVRETNPK-----HPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLHP 330 (913)
T ss_pred cCCCccCcHHHHHHHHHHHHHHHhcCCC-----CCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcCC
Confidence 4688888888888777889999998774 44444444443322221111 11112222222 33433334333
Q ss_pred cch---hhhhhhhhccchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHH
Q 000323 995 SRN---GVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDM 1071 (1669)
Q Consensus 995 ~~~---d~i~~le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~em 1071 (1669)
.+. =+.+-+.--|+++.+|++.|..- +. ...=.-+|.+|||..|++..+|-.-..+ ..++.+.-|
T Consensus 331 ~d~aK~vvA~Avr~~P~Sv~lW~kA~dLE--~~------~~~K~RVlRKALe~iP~sv~LWKaAVel----E~~~daril 398 (913)
T KOG0495|consen 331 PDVAKTVVANAVRFLPTSVRLWLKAADLE--SD------TKNKKRVLRKALEHIPRSVRLWKAAVEL----EEPEDARIL 398 (913)
T ss_pred hHHHHHHHHHHHHhCCCChhhhhhHHhhh--hH------HHHHHHHHHHHHHhCCchHHHHHHHHhc----cChHHHHHH
Confidence 222 11234455567888888877431 11 1334578999999999999999987666 556669999
Q ss_pred HHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHH
Q 000323 1072 FSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQR 1151 (1669)
Q Consensus 1072 lekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~t 1151 (1669)
+++||+.+|.+..||+-|.+.+ -|+.|..+|...-+.-|.+ -+||+.-..|.-.+|++++.-..
T Consensus 399 L~rAveccp~s~dLwlAlarLe--------tYenAkkvLNkaRe~iptd--------~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 399 LERAVECCPQSMDLWLALARLE--------TYENAKKVLNKAREIIPTD--------REIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred HHHHHHhccchHHHHHHHHHHH--------HHHHHHHHHHHHHhhCCCC--------hhHHHHHHHHHHhcCCHHHHHHH
Confidence 9999999999999999999999 9999999998777777667 49999999999999999988886
Q ss_pred HHhhcc-cccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHH
Q 000323 1152 ISRLLI-PATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRA 1230 (1669)
Q Consensus 1152 l~rLEq-~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdna 1230 (1669)
|+|=.. --.+|.. +. + -.||...-..+--. +.--+-.| +
T Consensus 463 i~rgl~~L~~ngv~--------------i~-r-dqWl~eAe~~e~ag----------sv~TcQAI--------------i 502 (913)
T KOG0495|consen 463 IDRGLSELQANGVE--------------IN-R-DQWLKEAEACEDAG----------SVITCQAI--------------I 502 (913)
T ss_pred HHHHHHHHhhccee--------------ec-H-HHHHHHHHHHhhcC----------ChhhHHHH--------------H
Confidence 655332 1122210 00 0 02555443211100 00000000 1
Q ss_pred HHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhcccCC
Q 000323 1231 IKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGD 1310 (1669)
Q Consensus 1231 lAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m~~ 1310 (1669)
.+.+..+ +-+++-...-......|-|.+ -+++++..|-.+|+.+|..-.|||.++++++.++..
T Consensus 503 ~avigig-------vEeed~~~tw~~da~~~~k~~---------~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~ 566 (913)
T KOG0495|consen 503 RAVIGIG-------VEEEDRKSTWLDDAQSCEKRP---------AIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTR 566 (913)
T ss_pred HHHHhhc-------cccchhHhHHhhhHHHHHhcc---------hHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcH
Confidence 1222211 011110000012222333333 677888899999999999999999999998888777
Q ss_pred ccH-HHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccc-------------ccccchhhhc
Q 000323 1311 LSS-VGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQY-------------SQVEISDPLV 1376 (1669)
Q Consensus 1311 ~A~-svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~-------------~~deALDaLr 1376 (1669)
++. +.|++|+...|+-.- .|++|+..-|..|+...|..|+...|...+.+-. ..++|-+.|.
T Consensus 567 Esl~Allqkav~~~pkae~----lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~lla 642 (913)
T KOG0495|consen 567 ESLEALLQKAVEQCPKAEI----LWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLA 642 (913)
T ss_pred HHHHHHHHHHHHhCCcchh----HHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHH
Confidence 777 889999999999888 9999999999999999999999887776665433 5566666666
Q ss_pred ccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCC
Q 000323 1377 ADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1438 (1669)
Q Consensus 1377 kgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N 1438 (1669)
++-+- ++..- .+|--+-+.|.+++.+||....|.||+.-|+=
T Consensus 643 kar~~---------------sgTeR-----v~mKs~~~er~ld~~eeA~rllEe~lk~fp~f 684 (913)
T KOG0495|consen 643 KARSI---------------SGTER-----VWMKSANLERYLDNVEEALRLLEEALKSFPDF 684 (913)
T ss_pred HHhcc---------------CCcch-----hhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch
Confidence 55221 11222 45666677778899999999999999888864
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.62 E-value=1.3e-13 Score=169.01 Aligned_cols=79 Identities=15% Similarity=0.108 Sum_probs=70.2
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhh
Q 000323 1027 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDA 1102 (1669)
Q Consensus 1027 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~ 1102 (1669)
..|+|+.|+..|.+||+++|+ +.+|+.++..|..++.-.++.+.|++|++++|++.. ++..|...+ .
T Consensus 139 ~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg--------~ 209 (615)
T TIGR00990 139 RNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLG--------K 209 (615)
T ss_pred HcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC--------C
Confidence 347789999999999999996 789999999999999999999999999999999876 677888888 8
Q ss_pred HHHHHHHHHHhh
Q 000323 1103 YDAALSVLCRCA 1114 (1669)
Q Consensus 1103 YdkAI~aLe~la 1114 (1669)
|++|+..|....
T Consensus 210 ~~eA~~~~~~~~ 221 (615)
T TIGR00990 210 YADALLDLTASC 221 (615)
T ss_pred HHHHHHHHHHHH
Confidence 999998885443
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.60 E-value=3.5e-13 Score=167.49 Aligned_cols=177 Identities=11% Similarity=0.045 Sum_probs=118.7
Q ss_pred hHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCH---
Q 000323 1200 DAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGL--- 1276 (1669)
Q Consensus 1200 Gd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDs--- 1276 (1669)
+..+...|...+|... +.+.+..+|+.+.++..+|.-|+. .++.
T Consensus 219 ~~~l~~~g~~~eA~~~---~~~al~~~p~~~~~~~~Lg~~l~~------------------------------~G~~~eA 265 (656)
T PRK15174 219 VDTLCAVGKYQEAIQT---GESALARGLDGAALRRSLGLAYYQ------------------------------SGRSREA 265 (656)
T ss_pred HHHHHHCCCHHHHHHH---HHHHHhcCCCCHHHHHHHHHHHHH------------------------------cCCchhh
Confidence 4445555666666666 555666666665555555422322 2222
Q ss_pred -HHHHHHHHHHHHhCCCchhH-HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Q 000323 1277 -ECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELM 1354 (1669)
Q Consensus 1277 -e~A~~LfdklLk~~P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc 1354 (1669)
.+|+.+|+++++..|.++.+ ..++..+...+..++|+..|++++...|++.. +|..|.....+.|++++|+..+
T Consensus 266 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~----a~~~La~~l~~~G~~~eA~~~l 341 (656)
T PRK15174 266 KLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPY----VRAMYARALRQVGQYTAASDEF 341 (656)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHCCCHHHHHHHH
Confidence 25788888889999988888 34444444444478888888999999998888 7888888888888888888877
Q ss_pred HHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhh
Q 000323 1355 DRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKA 1434 (1669)
Q Consensus 1355 ~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALka 1434 (1669)
++.... .|. ....+ ..++.+|.+ .|+.++|..+|+++|..
T Consensus 342 ~~al~~-------------------~P~--------~~~~~-----------~~~a~al~~--~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 342 VQLARE-------------------KGV--------TSKWN-----------RYAAAALLQ--AGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHh-------------------Ccc--------chHHH-----------HHHHHHHHH--CCCHHHHHHHHHHHHHh
Confidence 542220 010 01112 456778888 99999999999999999
Q ss_pred ccC---CcHHHHHHHHHHHHhc
Q 000323 1435 AAS---EHFKHCVREHAMLLLI 1453 (1669)
Q Consensus 1435 np~---N~~i~cLNNYAYFLS~ 1453 (1669)
.|+ ..|..+...|.-++..
T Consensus 382 ~P~~~~~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 382 RASHLPQSFEEGLLALDGQISA 403 (656)
T ss_pred ChhhchhhHHHHHHHHHHHHHh
Confidence 885 4556666777766654
No 12
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.60 E-value=2.7e-13 Score=170.84 Aligned_cols=353 Identities=8% Similarity=-0.025 Sum_probs=208.6
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHH
Q 000323 1029 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1104 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~Yd 1104 (1669)
|+.+.|+.++..|+.++|..+.+|..++.+|...+.-.++.+.|++|++++|++.. ++.+++..+ .++
T Consensus 29 g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g--------~~~ 100 (765)
T PRK10049 29 GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAG--------QYD 100 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--------CHH
Confidence 44567777777777777777777777777777777777777777777777777665 445566666 667
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcch
Q 000323 1105 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLI 1184 (1669)
Q Consensus 1105 kAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~ 1184 (1669)
+|+..|.++.+.. |+. .+ ++.+..+|...|++++|+..+.++.. ..-.++ ..-+..
T Consensus 101 eA~~~l~~~l~~~-P~~-------~~-~~~la~~l~~~g~~~~Al~~l~~al~--~~P~~~-~~~~~l------------ 156 (765)
T PRK10049 101 EALVKAKQLVSGA-PDK-------AN-LLALAYVYKRAGRHWDELRAMTQALP--RAPQTQ-QYPTEY------------ 156 (765)
T ss_pred HHHHHHHHHHHhC-CCC-------HH-HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCH-HHHHHH------------
Confidence 7777777777666 444 45 66677777777777777776666664 111111 111111
Q ss_pred hhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhH--------------------------------HHHHH
Q 000323 1185 FWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEK--------------------------------QRAIK 1232 (1669)
Q Consensus 1185 AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EP--------------------------------dnalA 1232 (1669)
+.++...+..++|+.. +..+.+ .| +.|++
T Consensus 157 ---------------a~~l~~~~~~e~Al~~---l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~ 217 (765)
T PRK10049 157 ---------------VQALRNNRLSAPALGA---IDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALA 217 (765)
T ss_pred ---------------HHHHHHCCChHHHHHH---HHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHH
Confidence 1111122222222222 111111 11 22222
Q ss_pred HHHHHHHHHhhhcCCcchhhhhhhchhhHhH---HHHHHHHHHhcCHHHHHHHHHHHHHhC---CCchhHHHHHHHHhhc
Q 000323 1233 LIEMAVNSVELYSNGESLEKETNLRSAHCFA---VNHIWCMAVLNGLECSMNLLEKYIKLY---PSCLELVLMKARLQKH 1306 (1669)
Q Consensus 1233 L~smA~dYY~~~~ndesla~~~~~kt~~~fK---LN~IR~lI~LEDse~A~~LfdklLk~~---P~d~eL~L~AAyL~~K 1306 (1669)
.++.+...+.. ++.....+. +..+..+...++.++|+..|+++++.. |..+.+++..+|+..+
T Consensus 218 ~~~~ll~~~~~-----------~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g 286 (765)
T PRK10049 218 QYDALEALWHD-----------NPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLH 286 (765)
T ss_pred HHHHHHhhccc-----------CCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcC
Confidence 22221111100 011101111 111222334568999999999999996 5555667877888877
Q ss_pred ccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhc----------------------
Q 000323 1307 DFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKV---------------------- 1364 (1669)
Q Consensus 1307 ~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~---------------------- 1364 (1669)
+ +++|+..|++++...|.+.......+.+|....++.+++++|+.++.+.....+..
T Consensus 287 ~-~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~ 365 (765)
T PRK10049 287 Q-PEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLL 365 (765)
T ss_pred C-cHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHH
Confidence 6 99999999999999998743223456666777789999999999988755443210
Q ss_pred ------ccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCC
Q 000323 1365 ------QYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1438 (1669)
Q Consensus 1365 ------Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N 1438 (1669)
+.+.++|++++++.....+. ..+.+ ..++.++.. .|+.++|...|++||..+|++
T Consensus 366 a~~l~~~g~~~eA~~~l~~al~~~P~------n~~l~-----------~~lA~l~~~--~g~~~~A~~~l~~al~l~Pd~ 426 (765)
T PRK10049 366 SQVAKYSNDLPQAEMRARELAYNAPG------NQGLR-----------IDYASVLQA--RGWPRAAENELKKAEVLEPRN 426 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHH-----------HHHHHHHHh--cCCHHHHHHHHHHHHhhCCCC
Confidence 11666777777765322111 01211 444555555 788888888888888888888
Q ss_pred cHHHHHHHHHHHHhcCCCCCCcccchhh
Q 000323 1439 HFKHCVREHAMLLLINESEPKEGAPISW 1466 (1669)
Q Consensus 1439 ~~i~cLNNYAYFLS~e~~dL~KAeqMS~ 1466 (1669)
...+-..|+ ..+...++++|+++=.
T Consensus 427 --~~l~~~~a~-~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 427 --INLEVEQAW-TALDLQEWRQMDVLTD 451 (765)
T ss_pred --hHHHHHHHH-HHHHhCCHHHHHHHHH
Confidence 666666666 3444445666666444
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.54 E-value=2.6e-12 Score=157.60 Aligned_cols=351 Identities=12% Similarity=-0.030 Sum_probs=200.0
Q ss_pred HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-----
Q 000323 1010 NEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----- 1084 (1669)
Q Consensus 1010 ~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----- 1084 (1669)
...|+.+|.-++.. |+++.|+..+.++|+++|+.+.+|+.++..|...+.-+++...|..+..+.+.+..
T Consensus 160 ~~~~~n~a~~~~~l-----~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~ 234 (615)
T TIGR00990 160 PVYYSNRAACHNAL-----GDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQA 234 (615)
T ss_pred hHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 45677777766655 56799999999999999999999999999999999988887777665544432211
Q ss_pred -----------------------------HHHHHHhcCC-----------C----cc-------------cchhhHHHHH
Q 000323 1085 -----------------------------LWLMYINSRT-----------P----LN-------------HRLDAYDAAL 1107 (1669)
Q Consensus 1085 -----------------------------LwlmYInsr~-----------s----ld-------------drl~~YdkAI 1107 (1669)
++.++...+. . +. .....|++|+
T Consensus 235 ~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~ 314 (615)
T TIGR00990 235 VERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAA 314 (615)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHH
Confidence 1111100000 0 00 0012578888
Q ss_pred HHHHHhhhcC--CCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchh
Q 000323 1108 SVLCRCASAS--DGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIF 1185 (1669)
Q Consensus 1108 ~aLe~las~~--~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~A 1185 (1669)
.+|.++.... .+.. ...+..+..+|...|++++|+..+.+... ..|. .. .+
T Consensus 315 ~~~~~al~~~~~~~~~-------a~a~~~lg~~~~~~g~~~eA~~~~~kal~-----l~P~-~~--------------~~ 367 (615)
T TIGR00990 315 RAFEKALDLGKLGEKE-------AIALNLRGTFKCLKGKHLEALADLSKSIE-----LDPR-VT--------------QS 367 (615)
T ss_pred HHHHHHHhcCCCChhh-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCC-cH--------------HH
Confidence 8888877643 1232 56778888899999999999997776664 2331 00 01
Q ss_pred hHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHH-
Q 000323 1186 WVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAV- 1264 (1669)
Q Consensus 1186 WL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKL- 1264 (1669)
| ...|.++...|...+|... +.++++.+|+++.+++.+|.-|+. .|+-+.+.....++....|-
T Consensus 368 ~----------~~la~~~~~~g~~~eA~~~---~~~al~~~p~~~~~~~~lg~~~~~--~g~~~~A~~~~~kal~l~P~~ 432 (615)
T TIGR00990 368 Y----------IKRASMNLELGDPDKAEED---FDKALKLNSEDPDIYYHRAQLHFI--KGEFAQAGKDYQKSIDLDPDF 432 (615)
T ss_pred H----------HHHHHHHHHCCCHHHHHHH---HHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCccC
Confidence 1 1234555666777777777 667777777777777666533332 33333333222222111111
Q ss_pred -----HHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHH-HhhcccCCccHHHHHHHHHhCCCCCchHH--HHHHH
Q 000323 1265 -----NHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKAR-LQKHDFGDLSSVGFEEALIKWPKGVPGIQ--CIWNQ 1336 (1669)
Q Consensus 1265 -----N~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAy-L~~K~m~~~A~svle~AL~~~PkNa~g~~--caW~Q 1336 (1669)
++...+..+++.+.|+.+|+++++..|.+.+++...+. +...+..++|+..|++|+.++|++.+.+. ..|..
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence 11111222456666666666666666666666222222 22222255666666666666666544111 11111
Q ss_pred HH-HHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHH
Q 000323 1337 YV-EYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHR 1415 (1669)
Q Consensus 1337 LI-q~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q 1415 (1669)
.+ .+....+++++|+.++++.+. ..+ +. ...+..||.++++
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~-------------------l~p-----------~~--------~~a~~~la~~~~~ 554 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALI-------------------IDP-----------EC--------DIAVATMAQLLLQ 554 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh-------------------cCC-----------Cc--------HHHHHHHHHHHHH
Confidence 11 111123555555555544211 011 00 0122567778888
Q ss_pred hhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHH
Q 000323 1416 LLQNDWNEARLAIDAALKAAASEHFKHCVREHAM 1449 (1669)
Q Consensus 1416 ~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAY 1449 (1669)
.|+++||..+|++|++..+.. ...++.+.|
T Consensus 555 --~g~~~eAi~~~e~A~~l~~~~--~e~~~a~~~ 584 (615)
T TIGR00990 555 --QGDVDEALKLFERAAELARTE--GELVQAISY 584 (615)
T ss_pred --ccCHHHHHHHHHHHHHHhccH--HHHHHHHHH
Confidence 999999999999999988865 444444444
No 14
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.53 E-value=6.9e-12 Score=158.36 Aligned_cols=358 Identities=9% Similarity=0.015 Sum_probs=249.3
Q ss_pred ccchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-
Q 000323 1006 VELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA- 1084 (1669)
Q Consensus 1006 ~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~- 1084 (1669)
.+...+.|..+|..+.+.+ +++.|+.+|..+|+.+|.++.+|+.++.++...+...++.++++++++..|++..
T Consensus 45 ~~~~a~~~~~lA~~~~~~g-----~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~~ 119 (765)
T PRK10049 45 MQLPARGYAAVAVAYRNLK-----QWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKANL 119 (765)
T ss_pred CCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 3455577888888887775 4699999999999999999999999999999999999999999999999999976
Q ss_pred --HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCC
Q 000323 1085 --LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGS 1162 (1669)
Q Consensus 1085 --LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g 1162 (1669)
++.+|...+ .+++|+.+|+++.+.. |+. .++++.+..++...|..++|+..++++.. ...
T Consensus 120 ~~la~~l~~~g--------~~~~Al~~l~~al~~~-P~~-------~~~~~~la~~l~~~~~~e~Al~~l~~~~~--~p~ 181 (765)
T PRK10049 120 LALAYVYKRAG--------RHWDELRAMTQALPRA-PQT-------QQYPTEYVQALRNNRLSAPALGAIDDANL--TPA 181 (765)
T ss_pred HHHHHHHHHCC--------CHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHCCChHHHHHHHHhCCC--CHH
Confidence 566677777 8899999999999998 666 88989999999999999999998877664 100
Q ss_pred C---CcccchHHHHHHhhccCCcc--------hh-----hHHHH-------H--HHHhhcc-chHHHhhhhhhhhhhccC
Q 000323 1163 N---DRHSLFLSDILTCLTISDKL--------IF-----WVCCV-------Y--LVIYRKL-PDAVLQLLECEKELFAID 1216 (1669)
Q Consensus 1163 ~---sE~~lSLsKi~~YLt~sDR~--------~A-----WL~~i-------Y--llrYrvL-PGd~y~q~e~~KEAf~I~ 1216 (1669)
. .+.......++.++...... .| .+... + ....+.. .+.+ ...+..++|...
T Consensus 182 ~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L-l~~g~~~eA~~~- 259 (765)
T PRK10049 182 EKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL-LARDRYKDVISE- 259 (765)
T ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH-HHhhhHHHHHHH-
Confidence 0 00001223344444332210 01 11111 0 1111111 3334 455788889888
Q ss_pred CCCcccchhh---HHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhh----------HhHHHHHHHHHHhcCHHHHHHHH
Q 000323 1217 WPPVQLEDDE---KQRAIKLIEMAVNSVELYSNGESLEKETNLRSAH----------CFAVNHIWCMAVLNGLECSMNLL 1283 (1669)
Q Consensus 1217 W~y~~vlk~E---PdnalAL~smA~dYY~~~~ndesla~~~~~kt~~----------~fKLN~IR~lI~LEDse~A~~Lf 1283 (1669)
|..+++.. |+.+...+ | ++|-. .++.+.+...-.++.. .....+...+...++.++|+.++
T Consensus 260 --~~~ll~~~~~~P~~a~~~l--a-~~yl~-~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l 333 (765)
T PRK10049 260 --YQRLKAEGQIIPPWAQRWV--A-SAYLK-LHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVT 333 (765)
T ss_pred --HHHhhccCCCCCHHHHHHH--H-HHHHh-cCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 88888774 66655543 3 33333 5666655554222211 11112222333467999999999
Q ss_pred HHHHHhCCCch---------------hH-HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCCh
Q 000323 1284 EKYIKLYPSCL---------------EL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRH 1347 (1669)
Q Consensus 1284 dklLk~~P~d~---------------eL-~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~ 1347 (1669)
+++++..|... ++ .+.+..+...+..++|+..|++++...|+|.. +|+.++......|++
T Consensus 334 ~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~----l~~~lA~l~~~~g~~ 409 (765)
T PRK10049 334 AHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQG----LRIDYASVLQARGWP 409 (765)
T ss_pred HHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHhcCCH
Confidence 99999987432 23 44555555555689999999999999999988 999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHH
Q 000323 1348 DFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLA 1427 (1669)
Q Consensus 1348 d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaA 1427 (1669)
++|+.++++ ++.. .|- ..+++ -.++..+.. .|++++|...
T Consensus 410 ~~A~~~l~~--------------al~l-----~Pd--------~~~l~-----------~~~a~~al~--~~~~~~A~~~ 449 (765)
T PRK10049 410 RAAENELKK--------------AEVL-----EPR--------NINLE-----------VEQAWTALD--LQEWRQMDVL 449 (765)
T ss_pred HHHHHHHHH--------------HHhh-----CCC--------ChHHH-----------HHHHHHHHH--hCCHHHHHHH
Confidence 999998865 1111 010 11222 344445555 8999999999
Q ss_pred HHHHHhhccCC
Q 000323 1428 IDAALKAAASE 1438 (1669)
Q Consensus 1428 YDKALkanp~N 1438 (1669)
++++++..|++
T Consensus 450 ~~~ll~~~Pd~ 460 (765)
T PRK10049 450 TDDVVAREPQD 460 (765)
T ss_pred HHHHHHhCCCC
Confidence 99999999988
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.51 E-value=3.8e-12 Score=158.37 Aligned_cols=209 Identities=8% Similarity=-0.105 Sum_probs=148.6
Q ss_pred hhhhccchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCC
Q 000323 1002 KLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG 1081 (1669)
Q Consensus 1002 ~le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~ 1081 (1669)
.|.+.|...+.+-.++...+. .|+++.|+..|.++++++|+++.+|+.++.+|.+.+...++.+.|++|++++|+
T Consensus 68 ~l~~~p~~~~~l~~l~~~~l~-----~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~ 142 (656)
T PRK15174 68 RVLTAKNGRDLLRRWVISPLA-----SSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG 142 (656)
T ss_pred HHHhCCCchhHHHHHhhhHhh-----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 455556666777666655553 367899999999999999999999999999999999999999999999999999
Q ss_pred CHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1082 SYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1082 NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
+.. +...|...+ .+++|+.+|..+.... |+. .+.+..++ .+...|++++|+..+.++..
T Consensus 143 ~~~a~~~la~~l~~~g--------~~~eA~~~~~~~~~~~-P~~-------~~a~~~~~-~l~~~g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 143 NSQIFALHLRTLVLMD--------KELQAISLARTQAQEV-PPR-------GDMIATCL-SFLNKSRLPEDHDLARALLP 205 (656)
T ss_pred cHHHHHHHHHHHHHCC--------ChHHHHHHHHHHHHhC-CCC-------HHHHHHHH-HHHHcCCHHHHHHHHHHHHh
Confidence 987 445666667 8899999999888877 454 44444443 36788999999999888765
Q ss_pred cccCCCCcccchHHHHHHhhccCCcchh--hHHH---HH--HHHhhccchHHHhhhhhhhh----hhccCCCCcccchhh
Q 000323 1158 PATGSNDRHSLFLSDILTCLTISDKLIF--WVCC---VY--LVIYRKLPDAVLQLLECEKE----LFAIDWPPVQLEDDE 1226 (1669)
Q Consensus 1158 ~Al~g~sE~~lSLsKi~~YLt~sDR~~A--WL~~---iY--llrYrvLPGd~y~q~e~~KE----Af~I~W~y~~vlk~E 1226 (1669)
..-.. .+ .........+...++...| .+.. .+ .......+|..|...|...+ |... +.++++.+
T Consensus 206 ~~~~~-~~-~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~---~~~Al~l~ 280 (656)
T PRK15174 206 FFALE-RQ-ESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEH---WRHALQFN 280 (656)
T ss_pred cCCCc-ch-hHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHH---HHHHHhhC
Confidence 21111 11 1112223455555655444 1111 11 33344557888888887765 6777 77777778
Q ss_pred HHHHHHHHHHH
Q 000323 1227 KQRAIKLIEMA 1237 (1669)
Q Consensus 1227 PdnalAL~smA 1237 (1669)
|+++.++..+|
T Consensus 281 P~~~~a~~~lg 291 (656)
T PRK15174 281 SDNVRIVTLYA 291 (656)
T ss_pred CCCHHHHHHHH
Confidence 87777776664
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.46 E-value=1.7e-11 Score=139.50 Aligned_cols=296 Identities=15% Similarity=0.099 Sum_probs=207.6
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCC--------
Q 000323 1011 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS-------- 1082 (1669)
Q Consensus 1011 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~N-------- 1082 (1669)
..+.-.+..++.. |+++.|+.+|.++++.+|.++.+|+.++.+|...+...++..+++++++..+..
T Consensus 36 ~~~y~~g~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 110 (389)
T PRK11788 36 SRDYFKGLNFLLN-----EQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLAL 110 (389)
T ss_pred cHHHHHHHHHHhc-----CChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 4444445555444 456899999999999999999999999999999999999999999999864322
Q ss_pred HHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCC
Q 000323 1083 YALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGS 1162 (1669)
Q Consensus 1083 Y~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g 1162 (1669)
+.|+.+|...+ .|++|+.+|.++.... +.. .+.+..++.+|...|++++|+..+.++.. ...
T Consensus 111 ~~La~~~~~~g--------~~~~A~~~~~~~l~~~-~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~ 172 (389)
T PRK11788 111 QELGQDYLKAG--------LLDRAEELFLQLVDEG-DFA-------EGALQQLLEIYQQEKDWQKAIDVAERLEK--LGG 172 (389)
T ss_pred HHHHHHHHHCC--------CHHHHHHHHHHHHcCC-cch-------HHHHHHHHHHHHHhchHHHHHHHHHHHHH--hcC
Confidence 12788888888 8999999999988766 444 68899999999999999999998887764 111
Q ss_pred CCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHh
Q 000323 1163 NDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVE 1242 (1669)
Q Consensus 1163 ~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~ 1242 (1669)
... .. . ...|....+..+...+...+|... +.+.++.+|+...+.+.+| ..|.
T Consensus 173 ~~~---------------~~---~-----~~~~~~~la~~~~~~~~~~~A~~~---~~~al~~~p~~~~~~~~la-~~~~ 225 (389)
T PRK11788 173 DSL---------------RV---E-----IAHFYCELAQQALARGDLDAARAL---LKKALAADPQCVRASILLG-DLAL 225 (389)
T ss_pred Ccc---------------hH---H-----HHHHHHHHHHHHHhCCCHHHHHHH---HHHHHhHCcCCHHHHHHHH-HHHH
Confidence 110 00 0 111122356666777777788777 7777777777777776665 4443
Q ss_pred hhcCCcchhhhhhhchhhHhHH-------HHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhcccCCccHHH
Q 000323 1243 LYSNGESLEKETNLRSAHCFAV-------NHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVG 1315 (1669)
Q Consensus 1243 ~~~ndesla~~~~~kt~~~fKL-------N~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m~~~A~sv 1315 (1669)
. .|+...+...-.++...-|- .++..+...++.++|+.+|.++++..|....+...+..+...+..++|+..
T Consensus 226 ~-~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~ 304 (389)
T PRK11788 226 A-QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQAL 304 (389)
T ss_pred H-CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHH
Confidence 3 45444444432222221111 223444457799999999999999999875554444444444458899999
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHH---cCChHHHHHHHHHHHHhhh
Q 000323 1316 FEEALIKWPKGVPGIQCIWNQYVEYALQ---NGRHDFAAELMDRWFHSVW 1362 (1669)
Q Consensus 1316 le~AL~~~PkNa~g~~caW~QLIq~al~---~en~d~Ai~Lc~~ff~gia 1362 (1669)
|++++...|++.. +..++...+. .|+.++++.++++.+....
T Consensus 305 l~~~l~~~P~~~~-----~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 305 LREQLRRHPSLRG-----FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred HHHHHHhCcCHHH-----HHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence 9999999999876 3344444442 4588899999988765443
No 17
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.39 E-value=1.9e-10 Score=146.70 Aligned_cols=383 Identities=13% Similarity=0.012 Sum_probs=238.8
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH--H--HHHHHhcCCCcccchhhH
Q 000323 1028 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--L--WLMYINSRTPLNHRLDAY 1103 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~--L--wlmYInsr~slddrl~~Y 1103 (1669)
-|+++.|++.|.+||+++|+++.+.+.++.++...++..++..+|++|+.-.|.++. + +..|.+.+ .|
T Consensus 47 ~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~g--------dy 118 (822)
T PRK14574 47 AGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEK--------RW 118 (822)
T ss_pred CCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC--------CH
Confidence 377899999999999999999755449999999999999999999999955555565 4 56999999 99
Q ss_pred HHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhc---cC
Q 000323 1104 DAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLT---IS 1180 (1669)
Q Consensus 1104 dkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt---~s 1180 (1669)
++|+++|+++.+.. |+. .++++.++.+|...|++++|+..+.++++ ..+ ......++.|+. .+
T Consensus 119 d~Aiely~kaL~~d-P~n-------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~--~dp----~~~~~l~layL~~~~~~ 184 (822)
T PRK14574 119 DQALALWQSSLKKD-PTN-------PDLISGMIMTQADAGRGGVVLKQATELAE--RDP----TVQNYMTLSYLNRATDR 184 (822)
T ss_pred HHHHHHHHHHHhhC-CCC-------HHHHHHHHHHHhhcCCHHHHHHHHHHhcc--cCc----chHHHHHHHHHHHhcch
Confidence 99999999999999 666 89999999999999999999999999997 333 233446666766 22
Q ss_pred Ccchh----hHHHHH--HHHhhccchHHHhhhhhhhhhhccCCCCcccc------hhhHHHHHHHHHHHHHHHhhhcC--
Q 000323 1181 DKLIF----WVCCVY--LVIYRKLPDAVLQLLECEKELFAIDWPPVQLE------DDEKQRAIKLIEMAVNSVELYSN-- 1246 (1669)
Q Consensus 1181 DR~~A----WL~~iY--llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vl------k~EPdnalAL~smA~dYY~~~~n-- 1246 (1669)
....+ .+...+ ...+-...-..+-.+|-..-|+.+-+.+..+. -.+-+.+..++..|. .... ..
T Consensus 185 ~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~-~~~~-~~~~ 262 (822)
T PRK14574 185 NYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAV-LPTR-SETE 262 (822)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcc-cccc-cchh
Confidence 21111 222222 11221111222333333333332222222111 111122222222110 0000 00
Q ss_pred -----Ccchhhhh-----hhchhhHhHH------HHHHHHHHhcCHHHHHHHHHHHHHhC---CCchhHHHHHHHHhhcc
Q 000323 1247 -----GESLEKET-----NLRSAHCFAV------NHIWCMAVLNGLECSMNLLEKYIKLY---PSCLELVLMKARLQKHD 1307 (1669)
Q Consensus 1247 -----desla~~~-----~~kt~~~fKL------N~IR~lI~LEDse~A~~LfdklLk~~---P~d~eL~L~AAyL~~K~ 1307 (1669)
|..++..+ -.+.+...+. -.|--+...++...|+..|+.+-... |.-+.-++..+||..+.
T Consensus 263 r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~ 342 (822)
T PRK14574 263 RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRL 342 (822)
T ss_pred hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCC
Confidence 00000000 0011111111 11222223669999999999998554 77777799999998887
Q ss_pred cCCccHHHHHHHHHhCCCCCc--hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCC
Q 000323 1308 FGDLSSVGFEEALIKWPKGVP--GIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPE 1385 (1669)
Q Consensus 1308 m~~~A~svle~AL~~~PkNa~--g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~e 1385 (1669)
|++|..+|.+++...|...+ .-...-.-|.--.++.+++++|..++.+.....++ + +..+ .++..+
T Consensus 343 -P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~-~------~~~~-~~~~~~--- 410 (822)
T PRK14574 343 -PEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPY-Q------VGVY-GLPGKE--- 410 (822)
T ss_pred -cHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc-E------Eecc-CCCCCC---
Confidence 99999999999998753211 00111234566688999999999999886442221 0 0000 112221
Q ss_pred CCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccc
Q 000323 1386 STSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAP 1463 (1669)
Q Consensus 1386 s~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeq 1463 (1669)
-+.|.. + ++...+.+....|++.+|...+|+.+..+|.| ..+++.+|-..+-.+. ...|++
T Consensus 411 ----pn~d~~-----~-----~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n--~~l~~~~A~v~~~Rg~-p~~A~~ 471 (822)
T PRK14574 411 ----PNDDWI-----E-----GQTLLVQSLVALNDLPTAQKKLEDLSSTAPAN--QNLRIALASIYLARDL-PRKAEQ 471 (822)
T ss_pred ----CCccHH-----H-----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCC-HHHHHH
Confidence 234422 2 23333333344899999999999999999999 9999999998877664 444444
No 18
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.34 E-value=6.1e-11 Score=142.60 Aligned_cols=381 Identities=15% Similarity=0.090 Sum_probs=270.5
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhH
Q 000323 1028 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAY 1103 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~Y 1103 (1669)
.|+++.|+.+|..++|+.|+.+++|..++..+...+..+.+.+.|..|++++|++|- +..+--.. ||+
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~-----Grl--- 200 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAE-----GRL--- 200 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhh-----ccc---
Confidence 467899999999999999999999999999999999999999999999999999998 44332222 334
Q ss_pred HHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcc
Q 000323 1104 DAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKL 1183 (1669)
Q Consensus 1104 dkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~ 1183 (1669)
++|-..|-++.... |.- -=+|--|--++..+|++.-||+.++.-.. ..|+
T Consensus 201 ~ea~~cYlkAi~~q-p~f-------AiawsnLg~~f~~~Gei~~aiq~y~eAvk-----ldP~----------------- 250 (966)
T KOG4626|consen 201 EEAKACYLKAIETQ-PCF-------AIAWSNLGCVFNAQGEIWLAIQHYEEAVK-----LDPN----------------- 250 (966)
T ss_pred chhHHHHHHHHhhC-Cce-------eeeehhcchHHhhcchHHHHHHHHHHhhc-----CCCc-----------------
Confidence 56666665555544 331 22455677788899999999996644332 2331
Q ss_pred hhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhh---
Q 000323 1184 IFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAH--- 1260 (1669)
Q Consensus 1184 ~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~--- 1260 (1669)
|.-.|-. +|++|--.+...+|... |.+.+..-|..|++.=.||.=||+ -|+-+++...++++..
T Consensus 251 -------f~dAYiN-LGnV~ke~~~~d~Avs~---Y~rAl~lrpn~A~a~gNla~iYye--qG~ldlAI~~Ykral~~~P 317 (966)
T KOG4626|consen 251 -------FLDAYIN-LGNVYKEARIFDRAVSC---YLRALNLRPNHAVAHGNLACIYYE--QGLLDLAIDTYKRALELQP 317 (966)
T ss_pred -------chHHHhh-HHHHHHHHhcchHHHHH---HHHHHhcCCcchhhccceEEEEec--cccHHHHHHHHHHHHhcCC
Confidence 3333545 58888888888999999 999999999999999999888998 4788888888766653
Q ss_pred HhHH--HHHHHH-HHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHH
Q 000323 1261 CFAV--NHIWCM-AVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWN 1335 (1669)
Q Consensus 1261 ~fKL--N~IR~l-I~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~ 1335 (1669)
.||. |-|... -..++.++|...|.++|.+||.-++- -|.-.|.+..+ -++|...|+.||+..|.=+. +.+
T Consensus 318 ~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~-~e~A~~ly~~al~v~p~~aa----a~n 392 (966)
T KOG4626|consen 318 NFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGK-IEEATRLYLKALEVFPEFAA----AHN 392 (966)
T ss_pred CchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcc-chHHHHHHHHHHhhChhhhh----hhh
Confidence 4444 213333 33779999999999999999999998 67777766664 88999999999999999998 999
Q ss_pred HHHHHHHHcCChHHHHHHHHH-------HHHhhhhccc------ccccchhhhcccCCCCCCCCCCCCCcccccccccch
Q 000323 1336 QYVEYALQNGRHDFAAELMDR-------WFHSVWKVQY------SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQM 1402 (1669)
Q Consensus 1336 QLIq~al~~en~d~Ai~Lc~~-------ff~gia~~Q~------~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~ 1402 (1669)
-|.-...++|++++|+.--++ |-.+....+. +-.+|+.-+-+.. ++ ++.+ .|-
T Consensus 393 NLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI-~~----nPt~-AeA-------- 458 (966)
T KOG4626|consen 393 NLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI-QI----NPTF-AEA-------- 458 (966)
T ss_pred hHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH-hc----CcHH-HHH--------
Confidence 999999999999999876655 3333333322 4444544443330 01 1111 221
Q ss_pred hhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHHHHHHhhhcccc
Q 000323 1403 DVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDRARSLP 1482 (1669)
Q Consensus 1403 d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~~~KtVsTYLDTAWILf 1482 (1669)
|+=|+-++-- .|+..||..+|+.||+.+|+=-=-.|=.=|+.=...+..| -++.|-..+.+|.+-|. -|.||
T Consensus 459 ---hsNLasi~kD--sGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D--~d~~~~kl~sivrdql~-~~rlp 530 (966)
T KOG4626|consen 459 ---HSNLASIYKD--SGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD--YDKRMKKLVSIVRDQLE-KNRLP 530 (966)
T ss_pred ---HhhHHHHhhc--cCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc--hHHHHHHHHHHHHHHHh-hhcCC
Confidence 2455666666 8999999999999999999521144444444444455543 34444432233333331 26666
Q ss_pred cccc
Q 000323 1483 YLKL 1486 (1669)
Q Consensus 1483 ~~~~ 1486 (1669)
.--|
T Consensus 531 svhP 534 (966)
T KOG4626|consen 531 SVHP 534 (966)
T ss_pred ccCc
Confidence 6555
No 19
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=9.9e-09 Score=121.69 Aligned_cols=470 Identities=17% Similarity=0.160 Sum_probs=334.0
Q ss_pred hhhhhccchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCC
Q 000323 1001 NKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNE 1080 (1669)
Q Consensus 1001 ~~le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP 1080 (1669)
-+|...-++.+.||++|.--..|.. +.-|.+++.|||+.+-.+..+|..|+.+.++.+..+.+...+.+||..=|
T Consensus 64 d~irrnR~~~~~WikYaqwEesq~e-----~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lP 138 (677)
T KOG1915|consen 64 DQIRRNRLNMQVWIKYAQWEESQKE-----IQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILP 138 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcc
Confidence 3777777889999999988877754 69999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhccccc
Q 000323 1081 GSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPAT 1160 (1669)
Q Consensus 1081 ~NY~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al 1160 (1669)
.-..||.-|+-.+-+|+ +-..|+++|++-..-. || ...|+..+++....++++-|...+.|..-
T Consensus 139 RVdqlWyKY~ymEE~Lg----Ni~gaRqiferW~~w~-P~--------eqaW~sfI~fElRykeieraR~IYerfV~--- 202 (677)
T KOG1915|consen 139 RVDQLWYKYIYMEEMLG----NIAGARQIFERWMEWE-PD--------EQAWLSFIKFELRYKEIERARSIYERFVL--- 202 (677)
T ss_pred hHHHHHHHHHHHHHHhc----ccHHHHHHHHHHHcCC-Cc--------HHHHHHHHHHHHHhhHHHHHHHHHHHHhe---
Confidence 99999999998775555 6699999999988887 77 68999999999999999999998877774
Q ss_pred CCCCcccchHHHHHHhhccCCcchhhHHHHH-HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHH
Q 000323 1161 GSNDRHSLFLSDILTCLTISDKLIFWVCCVY-LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVN 1239 (1669)
Q Consensus 1161 ~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iY-llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~d 1239 (1669)
+.| +-..|+.+.- +.+.+.. .++..+++.|++
T Consensus 203 --~HP----------------~v~~wikyarFE~k~g~~-----------------------------~~aR~VyerAie 235 (677)
T KOG1915|consen 203 --VHP----------------KVSNWIKYARFEEKHGNV-----------------------------ALARSVYERAIE 235 (677)
T ss_pred --ecc----------------cHHHHHHHHHHHHhcCcH-----------------------------HHHHHHHHHHHH
Confidence 444 2225887764 5555544 678888888877
Q ss_pred HHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHH--hhcccCC----ccH
Q 000323 1240 SVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARL--QKHDFGD----LSS 1313 (1669)
Q Consensus 1240 YY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL--~~K~m~~----~A~ 1313 (1669)
+... +..+. .+-.-|+. +-......+.|+-+|.-++..-|.+-.-.|+..|+ +++-+.. +++
T Consensus 236 ~~~~----d~~~e----~lfvaFA~----fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~I 303 (677)
T KOG1915|consen 236 FLGD----DEEAE----ILFVAFAE----FEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAI 303 (677)
T ss_pred Hhhh----HHHHH----HHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHH
Confidence 7752 22111 11111211 11223378899999999999999998777888776 3443322 222
Q ss_pred -----HHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccc-ccccchhhhcccCCCCCCCCC
Q 000323 1314 -----VGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQY-SQVEISDPLVADMSHSSPEST 1387 (1669)
Q Consensus 1314 -----svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~-~~deALDaLrkgns~i~~es~ 1387 (1669)
..|+..+..+|-|.. .|.-|+.+.=..|+-+.+.++-++ .|+.+.. .....-
T Consensus 304 v~KRk~qYE~~v~~np~nYD----sWfdylrL~e~~g~~~~Ire~yEr---AIanvpp~~ekr~W--------------- 361 (677)
T KOG1915|consen 304 VGKRKFQYEKEVSKNPYNYD----SWFDYLRLEESVGDKDRIRETYER---AIANVPPASEKRYW--------------- 361 (677)
T ss_pred hhhhhhHHHHHHHhCCCCch----HHHHHHHHHHhcCCHHHHHHHHHH---HHccCCchhHHHHH---------------
Confidence 579999999999999 999999999999999999888766 3333322 000000
Q ss_pred CCCCcccccccccchhhHHHHHHH--HHH-HhhhcCHHHHHHHHHHHHhhccC--CcHHHHHHHHHHHHhcCCCCCCccc
Q 000323 1388 STSDPEFSVSNRNQMDVMFGYLNL--SLH-RLLQNDWNEARLAIDAALKAAAS--EHFKHCVREHAMLLLINESEPKEGA 1462 (1669)
Q Consensus 1388 s~~vSDfy~~~~~Q~d~~fa~LGD--~L~-q~Lqg~~~EAfaAYDKALkanp~--N~~i~cLNNYAYFLS~e~~dL~KAe 1462 (1669)
--| .|||+ ++| .+.-.+.+.+...|..||+.=|- =.|--.|-=||.|.- ...+|.+|-
T Consensus 362 -----~RY-----------IYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feI-Rq~~l~~AR 424 (677)
T KOG1915|consen 362 -----RRY-----------IYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEI-RQLNLTGAR 424 (677)
T ss_pred -----HHH-----------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHH-HHcccHHHH
Confidence 013 45555 444 45567888899999999999993 456788999999975 344566655
Q ss_pred chhhhHHHHHHHHhhhcccccccc-cchhhhccccchhhHHHHhhhcCCCCCChhhHHHHHhhccCCCCcccccccccch
Q 000323 1463 PISWQLKLLNSYLDRARSLPYLKL-LPRQFINNIERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDL 1541 (1669)
Q Consensus 1463 qMS~~~KtVsTYLDTAWILf~~~~-lARiYI~~i~k~rv~~liDqaL~~~S~dss~~nkALE~W~g~slLpqKI~~kKyi 1541 (1669)
++=. +.| -.| .+. +=|.|| +++..|.-... -
T Consensus 425 kiLG--~AI----G~c-----PK~KlFk~YI------------------------elElqL~efDR-------------c 456 (677)
T KOG1915|consen 425 KILG--NAI----GKC-----PKDKLFKGYI------------------------ELELQLREFDR-------------C 456 (677)
T ss_pred HHHH--HHh----ccC-----CchhHHHHHH------------------------HHHHHHhhHHH-------------H
Confidence 4222 111 000 111 335566 23333332210 1
Q ss_pred hHHHHHHHhhcCcchhhHHHHHHHhhccCCCCCCCCCchhHHHHHhhhhhhhhhccCCCCchHHHHHHHHHhhhchhHHH
Q 000323 1542 VDFVEGIMEIVPSNYQLAFSVFKLLNKDHNPNITDAVPESVLFWASSSLVSAIFHAVPVAPEYVWVEAAGILGNISSIEE 1621 (1669)
Q Consensus 1542 ~dfVE~ime~~P~Ny~Lal~v~kll~k~~~~~~~d~~s~~~~fwA~s~l~~ai~~a~pvape~vWveaa~~l~~l~~~~~ 1621 (1669)
...-|+++|.-|.|-.-=+..+-|...- +-..- |..+.-=||.+-.--.||-+|.--+++.=.....+.
T Consensus 457 RkLYEkfle~~Pe~c~~W~kyaElE~~L-------gdtdR----aRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ek 525 (677)
T KOG1915|consen 457 RKLYEKFLEFSPENCYAWSKYAELETSL-------GDTDR----ARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEK 525 (677)
T ss_pred HHHHHHHHhcChHhhHHHHHHHHHHHHh-------hhHHH----HHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHH
Confidence 2356777888888877666555544321 11111 222222344443445799999999999888887666
Q ss_pred HHHHHHHhhhccccchHHHHHHHHhhhcc
Q 000323 1622 ISERFFKRALSVYPFSIKLWKCYYDLSKT 1650 (1669)
Q Consensus 1622 i~~rfy~~AlsvyPfS~~LW~~y~~~~~~ 1650 (1669)
- +-+|++-|.--+.+- .|-.+-+|+.+
T Consensus 526 a-R~LYerlL~rt~h~k-vWisFA~fe~s 552 (677)
T KOG1915|consen 526 A-RALYERLLDRTQHVK-VWISFAKFEAS 552 (677)
T ss_pred H-HHHHHHHHHhcccch-HHHhHHHHhcc
Confidence 5 999999998877765 99999999983
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.31 E-value=6.8e-10 Score=143.95 Aligned_cols=187 Identities=6% Similarity=-0.057 Sum_probs=130.7
Q ss_pred CHHHHHHHHHHHHHhCCCchhHHHHHHHH-hhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHH
Q 000323 1275 GLECSMNLLEKYIKLYPSCLELVLMKARL-QKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAEL 1353 (1669)
Q Consensus 1275 Dse~A~~LfdklLk~~P~d~eL~L~AAyL-~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~L 1353 (1669)
+.++|+..|.+++...|.+.. .|..++. ...+..++|+..|++++...|.+ . .|.++...+++.|++++|+..
T Consensus 491 ~~~eAi~a~~~Al~~~Pd~~~-~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~----a~~~la~all~~Gd~~eA~~~ 564 (987)
T PRK09782 491 LPGVALYAWLQAEQRQPDAWQ-HRAVAYQAYQVEDYATALAAWQKISLHDMSN-E----DLLAAANTAQAAGNGAARDRW 564 (987)
T ss_pred CcHHHHHHHHHHHHhCCchHH-HHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-H----HHHHHHHHHHHCCCHHHHHHH
Confidence 344677777777777776544 3333332 23333667777777776665553 3 467777788888888888888
Q ss_pred HHHH----------HHhhhhcc---cccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcC
Q 000323 1354 MDRW----------FHSVWKVQ---YSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQND 1420 (1669)
Q Consensus 1354 c~~f----------f~gia~~Q---~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~ 1420 (1669)
+++. +..++... .+.++|+..+++....- +. .+.| .-+|.++.+ .|+
T Consensus 565 l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~-----P~--~~a~-----------~~LA~~l~~--lG~ 624 (987)
T PRK09782 565 LQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA-----PS--ANAY-----------VARATIYRQ--RHN 624 (987)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-----CC--HHHH-----------HHHHHHHHH--CCC
Confidence 8761 11223233 47888888888764331 11 3444 567778888 999
Q ss_pred HHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHH------HHHHhh-hcccccccc--cchhh
Q 000323 1421 WNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLL------NSYLDR-ARSLPYLKL--LPRQF 1491 (1669)
Q Consensus 1421 ~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~~~KtV------sTYLDT-AWILf~~~~--lARiY 1491 (1669)
.++|..+|++||..+|++ ...+++++++|...+ +.++|..+-. +.+ ..++.. ||++...++ +|..+
T Consensus 625 ~deA~~~l~~AL~l~Pd~--~~a~~nLG~aL~~~G-~~eeAi~~l~--~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~ 699 (987)
T PRK09782 625 VPAAVSDLRAALELEPNN--SNYQAALGYALWDSG-DIAQSREMLE--RAHKGLPDDPALIRQLAYVNQRLDDMAATQHY 699 (987)
T ss_pred HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCC-CHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999 899999999988765 4666666444 555 455555 999999999 88888
Q ss_pred h
Q 000323 1492 I 1492 (1669)
Q Consensus 1492 I 1492 (1669)
+
T Consensus 700 l 700 (987)
T PRK09782 700 A 700 (987)
T ss_pred H
Confidence 8
No 21
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.30 E-value=1.8e-12 Score=143.52 Aligned_cols=260 Identities=16% Similarity=0.165 Sum_probs=104.5
Q ss_pred HHHHHHHHHhcccccchhhHHHHHHHHHHHH-Hh-CCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHH
Q 000323 1012 QCVEMALLILNQDANKLEGMKKALSLLSRAL-EA-DPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMY 1089 (1669)
Q Consensus 1012 lWLelAl~~Lnq~~n~~g~ydAALdLLsrAL-EI-NPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmY 1089 (1669)
..|.+|..++.. |++++|+.+|...+ .+ .|++++.|..++.+....+....+.++|++.++.++.+......+
T Consensus 10 ~~l~~A~~~~~~-----~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l 84 (280)
T PF13429_consen 10 EALRLARLLYQR-----GDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERL 84 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccc-----ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 445667777655 55699999996554 55 599999999999999999999999999999999988766522222
Q ss_pred ---HhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcc
Q 000323 1090 ---INSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRH 1166 (1669)
Q Consensus 1090 ---Insr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~ 1166 (1669)
+..+ .|++|+.+++.....+ ++ .+.|..++++|...|+++++...|..++. ...
T Consensus 85 ~~l~~~~--------~~~~A~~~~~~~~~~~-~~--------~~~l~~~l~~~~~~~~~~~~~~~l~~~~~--~~~---- 141 (280)
T PF13429_consen 85 IQLLQDG--------DPEEALKLAEKAYERD-GD--------PRYLLSALQLYYRLGDYDEAEELLEKLEE--LPA---- 141 (280)
T ss_dssp --------------------------------------------------H-HHHTT-HHHHHHHHHHHHH---T-----
T ss_pred ccccccc--------cccccccccccccccc-cc--------cchhhHHHHHHHHHhHHHHHHHHHHHHHh--ccC----
Confidence 3344 7899999998888776 45 57788899999999999999998888774 111
Q ss_pred cchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcC
Q 000323 1167 SLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSN 1246 (1669)
Q Consensus 1167 ~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~n 1246 (1669)
..+. ..|-.+.|.++.+.|..++|..+ +.++++.+|++..++..+
T Consensus 142 ------------~~~~----------~~~~~~~a~~~~~~G~~~~A~~~---~~~al~~~P~~~~~~~~l---------- 186 (280)
T PF13429_consen 142 ------------APDS----------ARFWLALAEIYEQLGDPDKALRD---YRKALELDPDDPDARNAL---------- 186 (280)
T ss_dssp --------------T-----------HHHHHHHHHHHHHCCHHHHHHHH---HHHHHHH-TT-HHHHHHH----------
T ss_pred ------------CCCC----------HHHHHHHHHHHHHcCCHHHHHHH---HHHHHHcCCCCHHHHHHH----------
Confidence 0111 22333467788889999999999 888899899888877665
Q ss_pred CcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHHhCC
Q 000323 1247 GESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWP 1324 (1669)
Q Consensus 1247 desla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~~~P 1324 (1669)
+..+|..++.++++.++..+.+..|.+..+ .+..+|+..++ +++|+..|++++..+|
T Consensus 187 --------------------~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~-~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 187 --------------------AWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR-YEEALEYLEKALKLNP 245 (280)
T ss_dssp --------------------HHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT--HHHHHHHHHHHHHHST
T ss_pred --------------------HHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc-cccccccccccccccc
Confidence 334455667777888999999999999999 67777777665 9999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000323 1325 KGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFH 1359 (1669)
Q Consensus 1325 kNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~ 1359 (1669)
+++. ....|+......|+.++|.++-++.+.
T Consensus 246 ~d~~----~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPL----WLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HH----HHHHHHHHHT-----------------
T ss_pred cccc----ccccccccccccccccccccccccccc
Confidence 9999 888999999999999999999877544
No 22
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.28 E-value=1.4e-09 Score=136.47 Aligned_cols=463 Identities=14% Similarity=0.137 Sum_probs=291.0
Q ss_pred cchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhC-------
Q 000323 1007 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHN------- 1079 (1669)
Q Consensus 1007 ~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVeln------- 1079 (1669)
|..+...+-|+.-.+++. .++.|+.|+.+|.+|..+||.+|.+..+|+.+|+..++-+.+....++|+...
T Consensus 230 p~~v~alv~L~~~~l~~~--d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~a 307 (1018)
T KOG2002|consen 230 PTCVSALVALGEVDLNFN--DSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKA 307 (1018)
T ss_pred hhhHHHHHHHHHHHHHcc--chHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHH
Confidence 367777777777666664 45889999999999999999999999999999999999999999999998766
Q ss_pred CCCHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccc
Q 000323 1080 EGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPA 1159 (1669)
Q Consensus 1080 P~NY~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~A 1159 (1669)
...||++-+|=.++ +|++|-..|.+..... ++. . +=.++=+.|.|...|+++.++.+..++..
T Consensus 308 es~Y~~gRs~Ha~G--------d~ekA~~yY~~s~k~~-~d~-----~-~l~~~GlgQm~i~~~dle~s~~~fEkv~k-- 370 (1018)
T KOG2002|consen 308 ESFYQLGRSYHAQG--------DFEKAFKYYMESLKAD-NDN-----F-VLPLVGLGQMYIKRGDLEESKFCFEKVLK-- 370 (1018)
T ss_pred HHHHHHHHHHHhhc--------cHHHHHHHHHHHHccC-CCC-----c-cccccchhHHHHHhchHHHHHHHHHHHHH--
Confidence 23567999999999 9999999998877776 442 1 22456789999999999999998888875
Q ss_pred cCCCCcccchHHHHHHhhccCC-c--chhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCccc-chhhHHHHHHHHH
Q 000323 1160 TGSNDRHSLFLSDILTCLTISD-K--LIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQL-EDDEKQRAIKLIE 1235 (1669)
Q Consensus 1160 l~g~sE~~lSLsKi~~YLt~sD-R--~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~v-lk~EPdnalAL~s 1235 (1669)
. .|...-.-+|.-||-... + .+...+-.| .|...-+.-+.-++|.. ..++ ...||--.+-.+.
T Consensus 371 ~---~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~-------l~K~~~~~~~d~~a~l~---laql~e~~d~~~sL~~~~ 437 (1018)
T KOG2002|consen 371 Q---LPNNYETMKILGCLYAHSAKKQEKRDKASNV-------LGKVLEQTPVDSEAWLE---LAQLLEQTDPWASLDAYG 437 (1018)
T ss_pred h---CcchHHHHHHHHhHHHhhhhhhHHHHHHHHH-------HHHHHhcccccHHHHHH---HHHHHHhcChHHHHHHHH
Confidence 2 221111223443332222 1 111222222 23333333344444332 2222 3456666677777
Q ss_pred HHHHHHhhhcCCcchhhhhhhchhhHhHH---HHHHHHHH-hcCHHHHHHHHHHHHHhCC-----Cc---hhH---HHHH
Q 000323 1236 MAVNSVELYSNGESLEKETNLRSAHCFAV---NHIWCMAV-LNGLECSMNLLEKYIKLYP-----SC---LEL---VLMK 1300 (1669)
Q Consensus 1236 mA~dYY~~~~ndesla~~~~~kt~~~fKL---N~IR~lI~-LEDse~A~~LfdklLk~~P-----~d---~eL---~L~A 1300 (1669)
+|.+.+.. .+. + +|. |-+..+.. ++..+.|...|+.++..+- +. +.| -..|
T Consensus 438 ~A~d~L~~-~~~------------~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 438 NALDILES-KGK------------Q-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HHHHHHHH-cCC------------C-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 77666653 221 1 444 22444433 7788999999998887722 21 223 3344
Q ss_pred HHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH------------HHHhhhhccc--
Q 000323 1301 ARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR------------WFHSVWKVQY-- 1366 (1669)
Q Consensus 1301 AyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~------------ff~gia~~Q~-- 1366 (1669)
..++.-++.+.|-..|..++...|.-.. ++.-|.-++..+++..+|+.+++. -|.|.++..+
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkehp~YId----~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEHPGYID----AYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHCchhHH----HHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhh
Confidence 4455555677888999999998887666 666777778888888888888887 4445444444
Q ss_pred ---ccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHH------HHHHhhh------cCHHHHHHHHHHH
Q 000323 1367 ---SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNL------SLHRLLQ------NDWNEARLAIDAA 1431 (1669)
Q Consensus 1367 ---~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD------~L~q~Lq------g~~~EAfaAYDKA 1431 (1669)
-+....-+++++... .|-| ++|++ .+|+|-. +..++|+..|.++
T Consensus 580 ~~~a~k~f~~i~~~~~~~----------~D~Y-----------sliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kv 638 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTK----------TDAY-----------SLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKV 638 (1018)
T ss_pred hcccccHHHHHHhhhccC----------Cchh-----------HHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHH
Confidence 222222233322111 6778 55555 3333333 3478899999999
Q ss_pred HhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHH--------HHHHhhhcccccccccchhhhccccchhhHHH
Q 000323 1432 LKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLL--------NSYLDRARSLPYLKLLPRQFINNIERPRLQQL 1503 (1669)
Q Consensus 1432 Lkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~~~KtV--------sTYLDTAWILf~~~~lARiYI~~i~k~rv~~l 1503 (1669)
|.-+|.| +.|=|=-+--|+..+. +.+|-. .|.-| .+||+-|-+++.++ .|+. --|.
T Consensus 639 L~~dpkN--~yAANGIgiVLA~kg~-~~~A~d---IFsqVrEa~~~~~dv~lNlah~~~e~~----qy~~------AIqm 702 (1018)
T KOG2002|consen 639 LRNDPKN--MYAANGIGIVLAEKGR-FSEARD---IFSQVREATSDFEDVWLNLAHCYVEQG----QYRL------AIQM 702 (1018)
T ss_pred HhcCcch--hhhccchhhhhhhccC-chHHHH---HHHHHHHHHhhCCceeeeHHHHHHHHH----HHHH------HHHH
Confidence 9999999 8888888888887664 666655 44333 22333344555553 3331 1122
Q ss_pred HhhhcCCC--CCChhhHHHHHhhccCCCCcccccccccchhHHHHHHHhhcCcchhhHHHHH
Q 000323 1504 IDNLLSPV--SSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVF 1563 (1669)
Q Consensus 1504 iDqaL~~~--S~dss~~nkALE~W~g~slLpqKI~~kKyi~dfVE~ime~~P~Ny~Lal~v~ 1563 (1669)
-++.|+.. ..++....---+.|+.... -+.-+.-+...++..|+|+.|-+-++
T Consensus 703 Ye~~lkkf~~~~~~~vl~~Lara~y~~~~-------~~eak~~ll~a~~~~p~~~~v~FN~a 757 (1018)
T KOG2002|consen 703 YENCLKKFYKKNRSEVLHYLARAWYEAGK-------LQEAKEALLKARHLAPSNTSVKFNLA 757 (1018)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHhCCccchHHhHHH
Confidence 23444441 2223333334445642211 12234666777899999988665444
No 23
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.23 E-value=1.1e-09 Score=125.09 Aligned_cols=274 Identities=14% Similarity=0.098 Sum_probs=191.0
Q ss_pred hhccchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhCCCCchHHHHHHHHHhhC
Q 000323 1004 KQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS----EILWITYLLIFYSNTNSVGKDDMFSYSVKHN 1079 (1669)
Q Consensus 1004 e~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtS----aeaWy~yl~lY~~~~~~eea~emlekAVeln 1079 (1669)
+..+.+.+.|..+|..+... |+++.|+.++..+++..+.. ..+|+.++.+|...+....+...|+++++.+
T Consensus 63 ~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 137 (389)
T PRK11788 63 KVDPETVELHLALGNLFRRR-----GEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG 137 (389)
T ss_pred hcCcccHHHHHHHHHHHHHc-----CcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC
Confidence 33456678888888888766 45699999999999864433 3688999999999999999999999999998
Q ss_pred CCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhh
Q 000323 1080 EGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRL 1155 (1669)
Q Consensus 1080 P~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rL 1155 (1669)
|.+.. ++.+|...+ .|++|++.|..+.... +.. ....+..++..+..+|...|++++|+..+.++
T Consensus 138 ~~~~~~~~~la~~~~~~g--------~~~~A~~~~~~~~~~~-~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 206 (389)
T PRK11788 138 DFAEGALQQLLEIYQQEK--------DWQKAIDVAERLEKLG-GDS--LRVEIAHFYCELAQQALARGDLDAARALLKKA 206 (389)
T ss_pred cchHHHHHHHHHHHHHhc--------hHHHHHHHHHHHHHhc-CCc--chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 87765 677888888 8999999999988766 332 11233445678889999999999999988777
Q ss_pred cccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHH-HHH
Q 000323 1156 LIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAI-KLI 1234 (1669)
Q Consensus 1156 Eq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnal-AL~ 1234 (1669)
.. ..|. + .....+++.+|...|..++|..+ +.++++.+|++.. ++.
T Consensus 207 l~-----~~p~--------------~-----------~~~~~~la~~~~~~g~~~~A~~~---~~~~~~~~p~~~~~~~~ 253 (389)
T PRK11788 207 LA-----ADPQ--------------C-----------VRASILLGDLALAQGDYAAAIEA---LERVEEQDPEYLSEVLP 253 (389)
T ss_pred Hh-----HCcC--------------C-----------HHHHHHHHHHHHHCCCHHHHHHH---HHHHHHHChhhHHHHHH
Confidence 64 1221 0 00112367778888888888888 8888887887643 333
Q ss_pred HHHHHHHhhhcCCcchhhhhhhch-----hhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhhcc-
Q 000323 1235 EMAVNSVELYSNGESLEKETNLRS-----AHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHD- 1307 (1669)
Q Consensus 1235 smA~dYY~~~~ndesla~~~~~kt-----~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~K~- 1307 (1669)
.++ ..|.. .|+.+.+...-.++ ....-+.....+...++.++|+.+|.++++..|++..+ .++..++...+
T Consensus 254 ~l~-~~~~~-~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~ 331 (389)
T PRK11788 254 KLM-ECYQA-LGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEE 331 (389)
T ss_pred HHH-HHHHH-cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCC
Confidence 443 33333 44444443331111 11111333444455779999999999999999999998 56666664432
Q ss_pred -cCCccHHHHHHHHHhCCCCCc
Q 000323 1308 -FGDLSSVGFEEALIKWPKGVP 1328 (1669)
Q Consensus 1308 -m~~~A~svle~AL~~~PkNa~ 1328 (1669)
...+++.+|++.+..-.+..|
T Consensus 332 g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 332 GRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred ccchhHHHHHHHHHHHHHhCCC
Confidence 366788888877754433334
No 24
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.17 E-value=4.8e-08 Score=122.54 Aligned_cols=574 Identities=15% Similarity=0.145 Sum_probs=314.1
Q ss_pred hHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHH
Q 000323 1009 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLM 1088 (1669)
Q Consensus 1009 d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~Lwlm 1088 (1669)
+.+..|-.|.....+ |+++.|.-++.-++..+|.++++|+.|+.+|-++|.-+.+....-.|.-++|.++.+|-.
T Consensus 138 ~l~~ll~eAN~lfar-----g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ 212 (895)
T KOG2076|consen 138 ELRQLLGEANNLFAR-----GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKR 212 (895)
T ss_pred HHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHH
Confidence 456777777776666 567999999999999999999999999999999998888899999999999999998855
Q ss_pred HHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCC--cc
Q 000323 1089 YINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND--RH 1166 (1669)
Q Consensus 1089 YInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~s--E~ 1166 (1669)
....-..++ .++.|+-.|-++.+.+ |+. -..++-.+.||..+|.+..|..+.-+|++ ..+.. ++
T Consensus 213 ladls~~~~----~i~qA~~cy~rAI~~~-p~n-------~~~~~ers~L~~~~G~~~~Am~~f~~l~~--~~p~~d~er 278 (895)
T KOG2076|consen 213 LADLSEQLG----NINQARYCYSRAIQAN-PSN-------WELIYERSSLYQKTGDLKRAMETFLQLLQ--LDPPVDIER 278 (895)
T ss_pred HHHHHHhcc----cHHHHHHHHHHHHhcC-Ccc-------hHHHHHHHHHHHHhChHHHHHHHHHHHHh--hCCchhHHH
Confidence 444332333 7899999999999999 454 78999999999999999999999999998 44311 11
Q ss_pred --cchHHHHHHhhccCCcchhhHH-HHHHH----Hh----hccchHHHhhhhh---------------------------
Q 000323 1167 --SLFLSDILTCLTISDKLIFWVC-CVYLV----IY----RKLPDAVLQLLEC--------------------------- 1208 (1669)
Q Consensus 1167 --~lSLsKi~~YLt~sDR~~AWL~-~iYll----rY----rvLPGd~y~q~e~--------------------------- 1208 (1669)
++---.++.|.+.+++..||=+ .-|.. ++ -.+...+|+-+..
T Consensus 279 ~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~ 358 (895)
T KOG2076|consen 279 IEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE 358 (895)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh
Confidence 1222236678888888666211 01100 00 0112222222221
Q ss_pred -------------hhhhhccCC-C----Ccccchhh---------------HHHHHHHHHHHHHHHhhhcCCcchhhhh-
Q 000323 1209 -------------EKELFAIDW-P----PVQLEDDE---------------KQRAIKLIEMAVNSVELYSNGESLEKET- 1254 (1669)
Q Consensus 1209 -------------~KEAf~I~W-~----y~~vlk~E---------------PdnalAL~smA~dYY~~~~ndesla~~~- 1254 (1669)
++..+.|+= + ..++-..+ |+...-|+-..++.|.. .+.-..+-..
T Consensus 359 ~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~-~~~~~~Al~~l 437 (895)
T KOG2076|consen 359 RRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTN-IGKYKEALRLL 437 (895)
T ss_pred hccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHh-cccHHHHHHHH
Confidence 111122211 0 00111111 21111121111232321 1111111111
Q ss_pred ----hhchhhHhHH--HHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHHhCCCC
Q 000323 1255 ----NLRSAHCFAV--NHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKG 1326 (1669)
Q Consensus 1255 ----~~kt~~~fKL--N~IR~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~~~PkN 1326 (1669)
+....+..-+ .+.+||..++.-+.|+..|.++|...|.+.+. .|.+.| +..+.+++|..+++..+.-+|++
T Consensus 438 ~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~-~~~g~~EkalEtL~~~~~~D~~~ 516 (895)
T KOG2076|consen 438 SPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLY-QQLGNHEKALETLEQIINPDGRN 516 (895)
T ss_pred HHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHH-HhcCCHHHHHHHHhcccCCCccc
Confidence 2222333222 56799888889999999999999999999999 444444 44444999999999888555555
Q ss_pred CchHHHHHHH-------HHHHHHHcCChHHHHHHHHH----HHHhhhhccc-ccccchhhhc--------------ccCC
Q 000323 1327 VPGIQCIWNQ-------YVEYALQNGRHDFAAELMDR----WFHSVWKVQY-SQVEISDPLV--------------ADMS 1380 (1669)
Q Consensus 1327 a~g~~caW~Q-------LIq~al~~en~d~Ai~Lc~~----ff~gia~~Q~-~~deALDaLr--------------kgns 1380 (1669)
++ .|+|.+ +.......|+.++=+.+... |+.-..-.+. ++.+..-..+ .+..
T Consensus 517 ~e--~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~ 594 (895)
T KOG2076|consen 517 AE--ACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRARE 594 (895)
T ss_pred hh--hccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHh
Confidence 55 444433 34455566676665555544 2221111111 0111111111 0000
Q ss_pred CCCC-------CCCCC--CCcccccccccchhhH---HHHHHHHHHHhhhcCHHHHHHHHHHHHhhccC--CcHHH-HHH
Q 000323 1381 HSSP-------ESTST--SDPEFSVSNRNQMDVM---FGYLNLSLHRLLQNDWNEARLAIDAALKAAAS--EHFKH-CVR 1445 (1669)
Q Consensus 1381 ~i~~-------es~s~--~vSDfy~~~~~Q~d~~---fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~--N~~i~-cLN 1445 (1669)
..+. -.+.. ..+++- .-.+|-. |.-+=++|.. .++++||......|+.+.-. -.-+- -|.
T Consensus 595 k~~~~~~~~~~l~d~~~~~~~e~~---~Lsiddwfel~~e~i~~L~k--~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~ 669 (895)
T KOG2076|consen 595 KATDDNVMEKALSDGTEFRAVELR---GLSIDDWFELFRELILSLAK--LQRVQEALSVVFTALEAYIFFQDSEIRKELQ 669 (895)
T ss_pred ccCchHHhhhcccchhhhhhhhhc---cCcHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHhhhhhhccHHHHHHHH
Confidence 0000 00110 001110 0112222 3333447777 99999999999999988772 11133 444
Q ss_pred HHHHHHhcCCCCCCcccchhhhHHHH-H---HHHhh----hcccccccccchhhhccccchhhHHHHhhhcCCCCCChhh
Q 000323 1446 EHAMLLLINESEPKEGAPISWQLKLL-N---SYLDR----ARSLPYLKLLPRQFINNIERPRLQQLIDNLLSPVSSDFSL 1517 (1669)
Q Consensus 1446 NYAYFLS~e~~dL~KAeqMS~~~KtV-s---TYLDT----AWILf~~~~lARiYI~~i~k~rv~~liDqaL~~~S~dss~ 1517 (1669)
.-.++.++...+-..|.. + ++-+ . -|+|+ .|.| --..+++.+..-+..-||-.++.+...++
T Consensus 670 ~~~l~~s~~~~d~~~a~~--~-lR~~i~~~~~~~~~~q~~l~n~-----~~s~~~~~~q~v~~~R~~~~~~~~~~~~~-- 739 (895)
T KOG2076|consen 670 FLGLKASLYARDPGDAFS--Y-LRSVITQFQFYLDVYQLNLWNL-----DFSYFSKYGQRVCYLRLIMRLLVKNKDDT-- 739 (895)
T ss_pred HHHHHHHHhcCCHHHHHH--H-HHHHHHHHhhhhhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhccCccCC--
Confidence 444555565555555543 2 3322 2 24554 5775 11333334444444444444554433221
Q ss_pred HHHHHhhccCC-CCcccccccccchhHHHHHHHhhcCcch----hhHHHHHH------HhhccCCCCCCCCCchhHHHHH
Q 000323 1518 VNLVLEVCYGP-SLLPRNFSKLKDLVDFVEGIMEIVPSNY----QLAFSVFK------LLNKDHNPNITDAVPESVLFWA 1586 (1669)
Q Consensus 1518 ~nkALE~W~g~-slLpqKI~~kKyi~dfVE~ime~~P~Ny----~Lal~v~k------ll~k~~~~~~~d~~s~~~~fwA 1586 (1669)
.+|-+-+|- .++...+ |+-...-=++-..+|.+. -||+++.- .+.+|+. -+++
T Consensus 740 --~~l~~i~gh~~~~~~s~---~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~-----------i~qG 803 (895)
T KOG2076|consen 740 --PPLALIYGHNLFVNASF---KHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQ-----------IAQG 803 (895)
T ss_pred --cceeeeechhHhhccch---HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHH-----------HHHH
Confidence 122222111 0111111 111122223445677744 44444332 2333333 4566
Q ss_pred hhhh--hhhhhccCCCCchHHHHHHHHHhhhchhHHHHHHHHHHhhhccccchHH
Q 000323 1587 SSSL--VSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPFSIK 1639 (1669)
Q Consensus 1587 ~s~l--~~ai~~a~pvape~vWveaa~~l~~l~~~~~i~~rfy~~AlsvyPfS~~ 1639 (1669)
.++| +.-+..+- -.-|.... -|-..++ .|+..++..||.+||.++|.+..
T Consensus 804 ~afL~RY~~lR~~~-~~QEa~YN-igRayh~-~gl~~LA~~YYekvL~~~p~~~~ 855 (895)
T KOG2076|consen 804 FAFLKRYKELRRCE-EKQEAFYN-IGRAYHQ-IGLVHLAVSYYEKVLEVSPKDVT 855 (895)
T ss_pred HHHHHHHHHhhccH-HHHHHHHH-HHHHHHH-cccHHHHHHHHHHHhCCCccccc
Confidence 6677 67765111 11233333 3344444 58899999999999999998753
No 25
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.17 E-value=6.7e-11 Score=150.43 Aligned_cols=145 Identities=7% Similarity=-0.024 Sum_probs=109.0
Q ss_pred HHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH------------HHHhhhhccc-ccccchhhhcccCCCCCCC
Q 000323 1319 ALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR------------WFHSVWKVQY-SQVEISDPLVADMSHSSPE 1385 (1669)
Q Consensus 1319 AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~------------ff~gia~~Q~-~~deALDaLrkgns~i~~e 1385 (1669)
+....|.|.. +|.|||..+.+.+++++|+++|++ ||.|+-+++. +.+.+.-+ .+..-.+.+
T Consensus 23 ~~~~~p~n~~----a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~ 96 (906)
T PRK14720 23 ANNYSLSKFK----ELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN 96 (906)
T ss_pred cccCCcchHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc
Confidence 4566788888 999999999999999999999999 8888866666 44444333 233333445
Q ss_pred CCCCCCcccccccccchhhHHHHH--HHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccc
Q 000323 1386 STSTSDPEFSVSNRNQMDVMFGYL--NLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAP 1463 (1669)
Q Consensus 1386 s~s~~vSDfy~~~~~Q~d~~fa~L--GD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeq 1463 (1669)
.+..+++++|.+--.--+--+++. ++||=+ .|+.+||+++||++|+++|.| .+||||||||++.. +|+||.+
T Consensus 97 ~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk--~g~~~ka~~~yer~L~~D~~n--~~aLNn~AY~~ae~--dL~KA~~ 170 (906)
T PRK14720 97 LKWAIVEHICDKILLYGENKLALRTLAEAYAK--LNENKKLKGVWERLVKADRDN--PEIVKKLATSYEEE--DKEKAIT 170 (906)
T ss_pred cchhHHHHHHHHHHhhhhhhHHHHHHHHHHHH--cCChHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHh--hHHHHHH
Confidence 555677877711111001111222 224444 599999999999999999999 99999999999999 9999999
Q ss_pred hhhhHHHHHHHHhh
Q 000323 1464 ISWQLKLLNSYLDR 1477 (1669)
Q Consensus 1464 MS~~~KtVsTYLDT 1477 (1669)
|+. |+|.+|+|+
T Consensus 171 m~~--KAV~~~i~~ 182 (906)
T PRK14720 171 YLK--KAIYRFIKK 182 (906)
T ss_pred HHH--HHHHHHHhh
Confidence 999 999999997
No 26
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.15 E-value=1.7e-08 Score=118.92 Aligned_cols=288 Identities=9% Similarity=0.071 Sum_probs=199.2
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HhCCCCchHHHHHHHHHhhCCCCHH-----HHHHHHhcCCCcccchh
Q 000323 1028 LEGMKKALSLLSRALEADPTSEILWITYLLIF-YSNTNSVGKDDMFSYSVKHNEGSYA-----LWLMYINSRTPLNHRLD 1101 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY-~~~~~~eea~emlekAVelnP~NY~-----LwlmYInsr~slddrl~ 1101 (1669)
.|+++.|..++.++-+.. +.+.++|.++... .++++.+.++++|++|++.+|++.. .+.+|+..+
T Consensus 97 eGd~~~A~k~l~~~~~~~-~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g-------- 167 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA-EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARN-------- 167 (398)
T ss_pred CCCHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCC--------
Confidence 488999996666655442 2377777775555 7888889999999999999999864 367999999
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCC
Q 000323 1102 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISD 1181 (1669)
Q Consensus 1102 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sD 1181 (1669)
.|+.|+..|+++.+.. |+. .+++..+.++|.+.|+++.|+.++.+|.. ....++
T Consensus 168 ~~~~Al~~l~~~~~~~-P~~-------~~al~ll~~~~~~~gdw~~a~~~l~~l~k--~~~~~~---------------- 221 (398)
T PRK10747 168 ENHAARHGVDKLLEVA-PRH-------PEVLRLAEQAYIRTGAWSSLLDILPSMAK--AHVGDE---------------- 221 (398)
T ss_pred CHHHHHHHHHHHHhcC-CCC-------HHHHHHHHHHHHHHHhHHHHHHHHHHHHH--cCCCCH----------------
Confidence 9999999999999998 666 89999999999999999999999988886 111111
Q ss_pred cchhhHH-HHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhh
Q 000323 1182 KLIFWVC-CVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAH 1260 (1669)
Q Consensus 1182 R~~AWL~-~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~ 1260 (1669)
....-+. ..| ..+....... ...+++.=-|. .+.+..|++ .
T Consensus 222 ~~~~~l~~~a~----~~l~~~~~~~--~~~~~l~~~w~--~lp~~~~~~------------------------------~ 263 (398)
T PRK10747 222 EHRAMLEQQAW----IGLMDQAMAD--QGSEGLKRWWK--NQSRKTRHQ------------------------------V 263 (398)
T ss_pred HHHHHHHHHHH----HHHHHHHHHh--cCHHHHHHHHH--hCCHHHhCC------------------------------H
Confidence 0000000 011 1110000000 00111110000 011111111 2
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHH
Q 000323 1261 CFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEY 1340 (1669)
Q Consensus 1261 ~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~ 1340 (1669)
..-+.+.+.++..++.++|..++.+.++. |.+.++.+...++...+ +.+++..++..+...|+++. .+..+.+.
T Consensus 264 ~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l~~~~-~~~al~~~e~~lk~~P~~~~----l~l~lgrl 337 (398)
T PRK10747 264 ALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRLKTNN-PEQLEKVLRQQIKQHGDTPL----LWSTLGQL 337 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhccCCC-hHHHHHHHHHHHhhCCCCHH----HHHHHHHH
Confidence 22233456667788999999999999995 55778866666665544 78899999999999999999 77788999
Q ss_pred HHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcC
Q 000323 1341 ALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQND 1420 (1669)
Q Consensus 1341 al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~ 1420 (1669)
+++.++|++|....++.. . ..| | +..+..|+.++-+ .|+
T Consensus 338 ~~~~~~~~~A~~~le~al-----------------~--~~P-----------~---------~~~~~~La~~~~~--~g~ 376 (398)
T PRK10747 338 LMKHGEWQEASLAFRAAL-----------------K--QRP-----------D---------AYDYAWLADALDR--LHK 376 (398)
T ss_pred HHHCCCHHHHHHHHHHHH-----------------h--cCC-----------C---------HHHHHHHHHHHHH--cCC
Confidence 999999999998886511 1 011 0 1123688888888 999
Q ss_pred HHHHHHHHHHHHhhc
Q 000323 1421 WNEARLAIDAALKAA 1435 (1669)
Q Consensus 1421 ~~EAfaAYDKALkan 1435 (1669)
.++|...|.++|...
T Consensus 377 ~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 377 PEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999999765
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.14 E-value=5.5e-09 Score=133.54 Aligned_cols=317 Identities=14% Similarity=0.049 Sum_probs=212.3
Q ss_pred HHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-HHHHHH
Q 000323 1012 QCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-LWLMYI 1090 (1669)
Q Consensus 1012 lWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-LwlmYI 1090 (1669)
.-+-+|..+.++ |+|+.|+.+|.++|+.+|+++++++.++.+|...++.+++.+.++++++.+|.+.. +.+.|+
T Consensus 104 ~llalA~ly~~~-----gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL 178 (822)
T PRK14574 104 GLASAARAYRNE-----KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYL 178 (822)
T ss_pred HHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHH
Confidence 333334455554 55799999999999999999999999999999999999999999999999999877 556666
Q ss_pred hcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc-------------
Q 000323 1091 NSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI------------- 1157 (1669)
Q Consensus 1091 nsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq------------- 1157 (1669)
..+ . ..+.+|+..|+++...+ |+. .++++.++..+...|-...|++-+..--.
T Consensus 179 ~~~--~----~~~~~AL~~~ekll~~~-P~n-------~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~ 244 (822)
T PRK14574 179 NRA--T----DRNYDALQASSEAVRLA-PTS-------EEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERD 244 (822)
T ss_pred HHh--c----chHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHH
Confidence 633 1 14556999999999999 676 89999999999999998888874432110
Q ss_pred -------cc---cCCCCcc----cchHHHHHHhhc---cCCcchh-h----------HHHH--H---HHHhhcc------
Q 000323 1158 -------PA---TGSNDRH----SLFLSDILTCLT---ISDKLIF-W----------VCCV--Y---LVIYRKL------ 1198 (1669)
Q Consensus 1158 -------~A---l~g~sE~----~lSLsKi~~YLt---~sDR~~A-W----------L~~i--Y---llrYrvL------ 1198 (1669)
++ .....|+ +-.|+.+..++. ....... | |..- | .-+|..|
T Consensus 245 ~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~ 324 (822)
T PRK14574 245 AAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYK 324 (822)
T ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCC
Confidence 00 0000111 114445555444 1111001 1 1110 1 2223222
Q ss_pred --------chHHHhhhhhhhhhhccCCCCcccchhhH------HHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhH-
Q 000323 1199 --------PDAVLQLLECEKELFAIDWPPVQLEDDEK------QRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFA- 1263 (1669)
Q Consensus 1199 --------PGd~y~q~e~~KEAf~I~W~y~~vlk~EP------dnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fK- 1263 (1669)
-++-|+-.+.+.+|..| |.+++..+| ........+.+.|.++ ++-+.+...-.++....|
T Consensus 325 ~P~y~~~a~adayl~~~~P~kA~~l---~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~--e~~~~A~~~l~~~~~~~p~ 399 (822)
T PRK14574 325 MPDYARRWAASAYIDRRLPEKAAPI---LSSLYYSDGKTFRNSDDLLDADDLYYSLNES--EQLDKAYQFAVNYSEQTPY 399 (822)
T ss_pred CCHHHHHHHHHHHHhcCCcHHHHHH---HHHHhhccccccCCCcchHHHHHHHHHHHhc--ccHHHHHHHHHHHHhcCCc
Confidence 24668888889999999 888877653 2232223333333331 221122222111111122
Q ss_pred --------------------HHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhcc-cCCccHHHHHHHHHh
Q 000323 1264 --------------------VNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHD-FGDLSSVGFEEALIK 1322 (1669)
Q Consensus 1264 --------------------LN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~-m~~~A~svle~AL~~ 1322 (1669)
...++.++-.++..+|.+++++++..-|.+..|++..+-+.... -|.+|...++.++.+
T Consensus 400 ~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 400 QVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred EEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 01133334477999999999999999999999955555554444 499999999999999
Q ss_pred CCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000323 1323 WPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1356 (1669)
Q Consensus 1323 ~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ 1356 (1669)
+|++.. +..+++..++..++|.+|..++..
T Consensus 480 ~P~~~~----~~~~~~~~al~l~e~~~A~~~~~~ 509 (822)
T PRK14574 480 APRSLI----LERAQAETAMALQEWHQMELLTDD 509 (822)
T ss_pred CCccHH----HHHHHHHHHHhhhhHHHHHHHHHH
Confidence 999999 888899999999999999988855
No 28
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.13 E-value=2.8e-08 Score=117.95 Aligned_cols=459 Identities=15% Similarity=0.124 Sum_probs=282.5
Q ss_pred cchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHH
Q 000323 1007 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALW 1086 (1669)
Q Consensus 1007 ~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~Lw 1086 (1669)
.....+||++|.--+.-+. ..-|.+++.||+.+-|----+||.|..+.-..++-.++.+.|++=.+..| ...-|
T Consensus 104 ~r~itLWlkYae~Emknk~-----vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P-~eqaW 177 (677)
T KOG1915|consen 104 YRNITLWLKYAEFEMKNKQ-----VNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEP-DEQAW 177 (677)
T ss_pred cccchHHHHHHHHHHhhhh-----HhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCC-cHHHH
Confidence 3444899999987665543 47899999999999999999999999999899999999999999999997 56799
Q ss_pred HHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCC-c
Q 000323 1087 LMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND-R 1165 (1669)
Q Consensus 1087 lmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~s-E 1165 (1669)
+.||+.+.+.- ..++|+++|++-+-.+ |+ ..-|+--+.+...-|++..|.+++.+--. .-|.. +
T Consensus 178 ~sfI~fElRyk----eieraR~IYerfV~~H-P~--------v~~wikyarFE~k~g~~~~aR~VyerAie--~~~~d~~ 242 (677)
T KOG1915|consen 178 LSFIKFELRYK----EIERARSIYERFVLVH-PK--------VSNWIKYARFEEKHGNVALARSVYERAIE--FLGDDEE 242 (677)
T ss_pred HHHHHHHHHhh----HHHHHHHHHHHHheec-cc--------HHHHHHHHHHHHhcCcHHHHHHHHHHHHH--HhhhHHH
Confidence 99999884443 5699999999999998 67 67888999999999999999887765432 11211 1
Q ss_pred ccchHHHHHHhhccC-CcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhh
Q 000323 1166 HSLFLSDILTCLTIS-DKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELY 1244 (1669)
Q Consensus 1166 ~~lSLsKi~~YLt~s-DR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~ 1244 (1669)
..+..-.|..+.... .-.-|-..+.| ....+| .|+..++|.- + +..=.+|
T Consensus 243 ~e~lfvaFA~fEe~qkE~ERar~iyky--Ald~~p------k~raeeL~k~---------------~------~~fEKqf 293 (677)
T KOG1915|consen 243 AEILFVAFAEFEERQKEYERARFIYKY--ALDHIP------KGRAEELYKK---------------Y------TAFEKQF 293 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcC------cccHHHHHHH---------------H------HHHHHHh
Confidence 111222222222110 00001111221 112222 2222222221 1 1111121
Q ss_pred cCCcchhhhh-------hhchhhHhHHHH------HHHHHHhcCHHHHHHHHHHHHHhCCCchh---------HHHHHH-
Q 000323 1245 SNGESLEKET-------NLRSAHCFAVNH------IWCMAVLNGLECSMNLLEKYIKLYPSCLE---------LVLMKA- 1301 (1669)
Q Consensus 1245 ~ndesla~~~-------~~kt~~~fKLN~------IR~lI~LEDse~A~~LfdklLk~~P~d~e---------L~L~AA- 1301 (1669)
...+...... +++....-|.|+ ++..-..++.+.+++.|.+++...|.-.+ ||+-.+
T Consensus 294 Gd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYal 373 (677)
T KOG1915|consen 294 GDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYAL 373 (677)
T ss_pred cchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHH
Confidence 1112222211 233333344443 44433366999999999999998887544 333332
Q ss_pred H--HhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccc--c------cccc
Q 000323 1302 R--LQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQY--S------QVEI 1371 (1669)
Q Consensus 1302 y--L~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~--~------~deA 1371 (1669)
| |..++ .+.++.||+..|.+-|...=--..+|+.|+++.+++.+.+.|.+++-....-+++.-. . +=.-
T Consensus 374 yeEle~ed-~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~e 452 (677)
T KOG1915|consen 374 YEELEAED-VERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLRE 452 (677)
T ss_pred HHHHHhhh-HHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhh
Confidence 3 34454 7788899999999999988888889999999999999999999998663333332221 0 0001
Q ss_pred hhhhccc-CCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHH
Q 000323 1372 SDPLVAD-MSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAML 1450 (1669)
Q Consensus 1372 LDaLrkg-ns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYF 1450 (1669)
.|-+++. -.- ++ + +|.++- +.++-+-..-..|+.+.|.+.|+=|++-.....-+..|.-|.-|
T Consensus 453 fDRcRkLYEkf--le---------~-~Pe~c~----~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdF 516 (677)
T KOG1915|consen 453 FDRCRKLYEKF--LE---------F-SPENCY----AWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDF 516 (677)
T ss_pred HHHHHHHHHHH--Hh---------c-ChHhhH----HHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhh
Confidence 1112211 000 00 0 111221 55666666666777778888888777776666667777777777
Q ss_pred HhcCCCCCCcccchhhhHHHHHHHHhh-----hcccccccc-----------cchhhhccccchhhHHHHhhhcCC--CC
Q 000323 1451 LLINESEPKEGAPISWQLKLLNSYLDR-----ARSLPYLKL-----------LPRQFINNIERPRLQQLIDNLLSP--VS 1512 (1669)
Q Consensus 1451 LS~e~~dL~KAeqMS~~~KtVsTYLDT-----AWILf~~~~-----------lARiYI~~i~k~rv~~liDqaL~~--~S 1512 (1669)
=-.++. ..||- ++-..|||+ .||-|.+-. ++..=|+.--.-|-|+..|.|+.. .+
T Consensus 517 Ei~~~E-~ekaR------~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~ 589 (677)
T KOG1915|consen 517 EIEEGE-FEKAR------ALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKES 589 (677)
T ss_pred hhhcch-HHHHH------HHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhc
Confidence 554332 22211 223788996 399886433 334444433445667788888765 22
Q ss_pred CChhhHHHHHhhc------cC--------CCCccccccccc
Q 000323 1513 SDFSLVNLVLEVC------YG--------PSLLPRNFSKLK 1539 (1669)
Q Consensus 1513 ~dss~~nkALE~W------~g--------~slLpqKI~~kK 1539 (1669)
.+-...=..||.| +| .+.+|+||++++
T Consensus 590 ~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk~vKKrr 630 (677)
T KOG1915|consen 590 TPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPKKVKKRR 630 (677)
T ss_pred CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccHHHHhhh
Confidence 2222333378889 33 344777776655
No 29
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.09 E-value=7.5e-10 Score=122.93 Aligned_cols=153 Identities=20% Similarity=0.152 Sum_probs=105.4
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHhhcc-cCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHH
Q 000323 1267 IWCMAVLNGLECSMNLLEKYIKLY--PSCLELVLMKARLQKHD-FGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQ 1343 (1669)
Q Consensus 1267 IR~lI~LEDse~A~~LfdklLk~~--P~d~eL~L~AAyL~~K~-m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~ 1343 (1669)
+..+...++.+.+..++.++.+.. |.+..+++..+.+..+. .+++|+..|++||...|+|.. ++..|+...+.
T Consensus 117 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~----~~~~l~~~li~ 192 (280)
T PF13429_consen 117 LQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD----ARNALAWLLID 192 (280)
T ss_dssp -H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH----HHHHHHHHHCT
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHH
Confidence 444455678899999999988766 77888866555554443 488999999999999999999 99999999999
Q ss_pred cCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHH
Q 000323 1344 NGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNE 1423 (1669)
Q Consensus 1344 ~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~E 1423 (1669)
.|+.++++++++.|-... +. .++++ ..++.++.. .|+.++
T Consensus 193 ~~~~~~~~~~l~~~~~~~-------------------~~--------~~~~~-----------~~la~~~~~--lg~~~~ 232 (280)
T PF13429_consen 193 MGDYDEAREALKRLLKAA-------------------PD--------DPDLW-----------DALAAAYLQ--LGRYEE 232 (280)
T ss_dssp TCHHHHHHHHHHHHHHH--------------------HT--------SCCHC-----------HHHHHHHHH--HT-HHH
T ss_pred CCChHHHHHHHHHHHHHC-------------------cC--------HHHHH-----------HHHHHHhcc--cccccc
Confidence 999999999997754433 01 12333 667888888 899999
Q ss_pred HHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhh
Q 000323 1424 ARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISW 1466 (1669)
Q Consensus 1424 AfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~ 1466 (1669)
|..+|+++++.+|++ ...+..||..|...|. .++|.++-.
T Consensus 233 Al~~~~~~~~~~p~d--~~~~~~~a~~l~~~g~-~~~A~~~~~ 272 (280)
T PF13429_consen 233 ALEYLEKALKLNPDD--PLWLLAYADALEQAGR-KDEALRLRR 272 (280)
T ss_dssp HHHHHHHHHHHSTT---HHHHHHHHHHHT--------------
T ss_pred ccccccccccccccc--cccccccccccccccc-ccccccccc
Confidence 999999999999999 8999999999988774 666666443
No 30
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.07 E-value=1.2e-09 Score=131.89 Aligned_cols=322 Identities=13% Similarity=0.057 Sum_probs=225.1
Q ss_pred hhhhccchHHHHHHHHHHHhcccc-----------------------------cchhhHHHHHHHHHHHHHhCCCCHHHH
Q 000323 1002 KLKQVELSNEQCVEMALLILNQDA-----------------------------NKLEGMKKALSLLSRALEADPTSEILW 1052 (1669)
Q Consensus 1002 ~le~~~~d~qlWLelAl~~Lnq~~-----------------------------n~~g~ydAALdLLsrALEINPtSaeaW 1052 (1669)
-||-+|.-++.||-+|--+..+.. ...|++..|..-|.+|+++.|.=+.+|
T Consensus 142 aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiaw 221 (966)
T KOG4626|consen 142 AIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAW 221 (966)
T ss_pred HHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeee
Confidence 455566677999998865555542 135667778888999999999999999
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhh
Q 000323 1053 ITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASAC 1127 (1669)
Q Consensus 1053 y~yl~lY~~~~~~eea~emlekAVelnP~NY~-----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~ 1127 (1669)
..|+..|...|+-.++...|++||+++| ||. |+..|-..+ .|++|+..|+++..-. |.-
T Consensus 222 snLg~~f~~~Gei~~aiq~y~eAvkldP-~f~dAYiNLGnV~ke~~--------~~d~Avs~Y~rAl~lr-pn~------ 285 (966)
T KOG4626|consen 222 SNLGCVFNAQGEIWLAIQHYEEAVKLDP-NFLDAYINLGNVYKEAR--------IFDRAVSCYLRALNLR-PNH------ 285 (966)
T ss_pred hhcchHHhhcchHHHHHHHHHHhhcCCC-cchHHHhhHHHHHHHHh--------cchHHHHHHHHHHhcC-Ccc------
Confidence 9999999999998999999999999997 443 777777777 7899999998876654 332
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchh-----------hHHHHH-HHHh
Q 000323 1128 ILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIF-----------WVCCVY-LVIY 1195 (1669)
Q Consensus 1128 iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~A-----------WL~~iY-llrY 1195 (1669)
-.+.--|.-.|-.+|.+|-||.++.|-.. ..|+ .--+.=-+--..+|+.-. .||-.| +.-|
T Consensus 286 -A~a~gNla~iYyeqG~ldlAI~~Ykral~-----~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~ 358 (966)
T KOG4626|consen 286 -AVAHGNLACIYYEQGLLDLAIDTYKRALE-----LQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMN 358 (966)
T ss_pred -hhhccceEEEEeccccHHHHHHHHHHHHh-----cCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHH
Confidence 33444556678899999999999988775 3331 111111111112222222 333344 3222
Q ss_pred hccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhh---hchhhHhHH---HHHHH
Q 000323 1196 RKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETN---LRSAHCFAV---NHIWC 1269 (1669)
Q Consensus 1196 rvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~---~kt~~~fKL---N~IR~ 1269 (1669)
=+|++|+--++-.+|..+ |...+...|+-+.+...+| ..|.+ -|+-+.+..-+ .++..-|+- |+.--
T Consensus 359 --NLgni~~E~~~~e~A~~l---y~~al~v~p~~aaa~nNLa-~i~kq-qgnl~~Ai~~YkealrI~P~fAda~~NmGnt 431 (966)
T KOG4626|consen 359 --NLGNIYREQGKIEEATRL---YLKALEVFPEFAAAHNNLA-SIYKQ-QGNLDDAIMCYKEALRIKPTFADALSNMGNT 431 (966)
T ss_pred --HHHHHHHHhccchHHHHH---HHHHHhhChhhhhhhhhHH-HHHHh-cccHHHHHHHHHHHHhcCchHHHHHHhcchH
Confidence 268999999999999999 9999999999999999996 66665 22222111112 222233332 43333
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCCh
Q 000323 1270 MAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRH 1347 (1669)
Q Consensus 1270 lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~ 1347 (1669)
|-..+|.+.|+..+.+++...|+=++- -|.+.|=... ...+|+..|++||.+.||-+. .-|-..-.+|+.-...|+
T Consensus 432 ~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsG-ni~~AI~sY~~aLklkPDfpd-A~cNllh~lq~vcdw~D~ 509 (966)
T KOG4626|consen 432 YKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSG-NIPEAIQSYRTALKLKPDFPD-AYCNLLHCLQIVCDWTDY 509 (966)
T ss_pred HHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccC-CcHHHHHHHHHHHccCCCCch-hhhHHHHHHHHHhcccch
Confidence 444669999999999999999999999 7777774444 377999999999999999888 344445566666677777
Q ss_pred HHHHHHHH
Q 000323 1348 DFAAELMD 1355 (1669)
Q Consensus 1348 d~Ai~Lc~ 1355 (1669)
|+-.+-+.
T Consensus 510 d~~~~kl~ 517 (966)
T KOG4626|consen 510 DKRMKKLV 517 (966)
T ss_pred HHHHHHHH
Confidence 76544443
No 31
>PRK12370 invasion protein regulator; Provisional
Probab=99.03 E-value=1e-08 Score=125.71 Aligned_cols=115 Identities=17% Similarity=0.142 Sum_probs=98.6
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC---------CCchHHHHHHHHHhhCCCCHH----HHHHHHhcC
Q 000323 1027 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNT---------NSVGKDDMFSYSVKHNEGSYA----LWLMYINSR 1093 (1669)
Q Consensus 1027 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~---------~~eea~emlekAVelnP~NY~----LwlmYInsr 1093 (1669)
..+.++.|+.+|.+|++++|+.+.+|..++.+|.... ...++.+.+++|++++|++.. ++.+|...+
T Consensus 273 ~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 273 TPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS 352 (553)
T ss_pred CHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence 4577899999999999999999999999988765332 135688999999999999988 555667777
Q ss_pred CCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1094 TPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1094 ~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
.|++|+..|+++.+.+ |+. .+.++.+..+|.+.|++++|+..+.+...
T Consensus 353 --------~~~~A~~~~~~Al~l~-P~~-------~~a~~~lg~~l~~~G~~~eAi~~~~~Al~ 400 (553)
T PRK12370 353 --------EYIVGSLLFKQANLLS-PIS-------ADIKYYYGWNLFMAGQLEEALQTINECLK 400 (553)
T ss_pred --------CHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7899999999999998 565 78899999999999999999998888775
No 32
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.02 E-value=1.8e-08 Score=126.80 Aligned_cols=358 Identities=15% Similarity=0.116 Sum_probs=238.8
Q ss_pred hhhhhhccchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 000323 1000 LNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS-EILWITYLLIFYSNTNSVGKDDMFSYSVKH 1078 (1669)
Q Consensus 1000 i~~le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtS-aeaWy~yl~lY~~~~~~eea~emlekAVel 1078 (1669)
.+=|.++|-.+-..|=-|...+|- ++|-.|+.+|..+|.++|.. +.+-+-.++.|-+++..+.+.-.|++|.++
T Consensus 154 ~~Vl~~sp~Nil~LlGkA~i~ynk-----kdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqL 228 (1018)
T KOG2002|consen 154 HFVLKQSPDNILALLGKARIAYNK-----KDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQL 228 (1018)
T ss_pred HHHHhhCCcchHHHHHHHHHHhcc-----ccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhc
Confidence 345667777777777777766665 56899999999999999984 445445556777778888899999999999
Q ss_pred CCCCHH--HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Q 000323 1079 NEGSYA--LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1156 (1669)
Q Consensus 1079 nP~NY~--LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLE 1156 (1669)
+|.+-. +++-++... +.+ ...|.+|++.+-+.+.-+ +.. -+++..|..-|.+.|+|..+++.-...+
T Consensus 229 dp~~v~alv~L~~~~l~--~~d-~~s~~~~~~ll~~ay~~n-~~n-------P~~l~~LAn~fyfK~dy~~v~~la~~ai 297 (1018)
T KOG2002|consen 229 DPTCVSALVALGEVDLN--FND-SDSYKKGVQLLQRAYKEN-NEN-------PVALNHLANHFYFKKDYERVWHLAEHAI 297 (1018)
T ss_pred ChhhHHHHHHHHHHHHH--ccc-hHHHHHHHHHHHHHHhhc-CCC-------cHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 997776 445444444 122 248999999999998888 455 7999999999999999999999333222
Q ss_pred ccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHH-HHHHHH
Q 000323 1157 IPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQR-AIKLIE 1235 (1669)
Q Consensus 1157 q~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdn-alAL~s 1235 (1669)
..+. +.. +++ ....|+.. -|...|...+||.. |.+.++.+|++ ++.++.
T Consensus 298 ~~t~---~~~-----------~~a-es~Y~~gR------------s~Ha~Gd~ekA~~y---Y~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 298 KNTE---NKS-----------IKA-ESFYQLGR------------SYHAQGDFEKAFKY---YMESLKADNDNFVLPLVG 347 (1018)
T ss_pred Hhhh---hhH-----------HHH-HHHHHHHH------------HHHhhccHHHHHHH---HHHHHccCCCCccccccc
Confidence 2110 110 011 11124433 33444555566666 55555555555 333333
Q ss_pred HHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhh-c-cc-CC
Q 000323 1236 MAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQK-H-DF-GD 1310 (1669)
Q Consensus 1236 mA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~-K-~m-~~ 1310 (1669)
+ .+-+|..++.+++.-.|+++++.+|.+.+. .|-..|... + .+ -+
T Consensus 348 l------------------------------gQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d 397 (1018)
T KOG2002|consen 348 L------------------------------GQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRD 397 (1018)
T ss_pred h------------------------------hHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHH
Confidence 2 344466779999999999999999999998 444444433 2 12 56
Q ss_pred ccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCC
Q 000323 1311 LSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTS 1390 (1669)
Q Consensus 1311 ~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~ 1390 (1669)
.|+.++.+++...|.+.. +|..+.++.... |.-...... ..|+|.|.....++++
T Consensus 398 ~a~~~l~K~~~~~~~d~~----a~l~laql~e~~-d~~~sL~~~--------------~~A~d~L~~~~~~ip~------ 452 (1018)
T KOG2002|consen 398 KASNVLGKVLEQTPVDSE----AWLELAQLLEQT-DPWASLDAY--------------GNALDILESKGKQIPP------ 452 (1018)
T ss_pred HHHHHHHHHHhcccccHH----HHHHHHHHHHhc-ChHHHHHHH--------------HHHHHHHHHcCCCCCH------
Confidence 889999999999999999 998888866544 555444444 3577777766666643
Q ss_pred CcccccccccchhhHHHHHHH-HHHHhhhcCHHHHHHHHHHHHhh-----ccCCc-HHHHHHHHHHHHhcCC-CCCCccc
Q 000323 1391 DPEFSVSNRNQMDVMFGYLNL-SLHRLLQNDWNEARLAIDAALKA-----AASEH-FKHCVREHAMLLLINE-SEPKEGA 1462 (1669)
Q Consensus 1391 vSDfy~~~~~Q~d~~fa~LGD-~L~q~Lqg~~~EAfaAYDKALka-----np~N~-~i~cLNNYAYFLS~e~-~dL~KAe 1462 (1669)
-+|+. +-.++..|++.+|..-|++||+- |++++ -+.+=..|-.=.+++. .+-..|+
T Consensus 453 ----------------E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~ 516 (1018)
T KOG2002|consen 453 ----------------EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAE 516 (1018)
T ss_pred ----------------HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHH
Confidence 33444 44445789999999999999966 44442 1122233433333333 3556666
Q ss_pred chhhhHHHH----HHHHhh
Q 000323 1463 PISWQLKLL----NSYLDR 1477 (1669)
Q Consensus 1463 qMS~~~KtV----sTYLDT 1477 (1669)
+|= |-| ++|+|-
T Consensus 517 e~Y---k~Ilkehp~YId~ 532 (1018)
T KOG2002|consen 517 EMY---KSILKEHPGYIDA 532 (1018)
T ss_pred HHH---HHHHHHCchhHHH
Confidence 643 444 888885
No 33
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.02 E-value=6.5e-08 Score=121.08 Aligned_cols=387 Identities=10% Similarity=-0.021 Sum_probs=246.5
Q ss_pred HHHHHHHHHhcccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhCCCCchHHHHHHHHHh--hCCCCHH---
Q 000323 1012 QCVEMALLILNQDANKLEGMKKALSLLSRALEAD--PTSEILWITYLLIFYSNTNSVGKDDMFSYSVK--HNEGSYA--- 1084 (1669)
Q Consensus 1012 lWLelAl~~Lnq~~n~~g~ydAALdLLsrALEIN--PtSaeaWy~yl~lY~~~~~~eea~emlekAVe--lnP~NY~--- 1084 (1669)
.|-.+...+... |+++.|+.+|....+.. +-++..|-.++..+.+.+....+.+.+..+++ +.|+.+.
T Consensus 89 ~~~~~i~~l~~~-----g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 89 SLCSQIEKLVAC-----GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred eHHHHHHHHHcC-----CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 455555454443 55799999999988754 34778899999999888887778888888775 4555444
Q ss_pred HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCC
Q 000323 1085 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND 1164 (1669)
Q Consensus 1085 LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~s 1164 (1669)
|..+|.+.+ .+++|+.+|.+|.. ++ .-.|..|+..|+..|++++|+..+.++.. .|..
T Consensus 164 Li~~y~k~g--------~~~~A~~lf~~m~~---~~--------~~t~n~li~~~~~~g~~~~A~~lf~~M~~---~g~~ 221 (697)
T PLN03081 164 VLLMHVKCG--------MLIDARRLFDEMPE---RN--------LASWGTIIGGLVDAGNYREAFALFREMWE---DGSD 221 (697)
T ss_pred HHHHHhcCC--------CHHHHHHHHhcCCC---CC--------eeeHHHHHHHHHHCcCHHHHHHHHHHHHH---hCCC
Confidence 778898888 78999999999864 34 45789999999999999999999998874 3333
Q ss_pred cccchHH-HHHHhhccCCcchhhHHHHHHHHhh--------ccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHH
Q 000323 1165 RHSLFLS-DILTCLTISDKLIFWVCCVYLVIYR--------KLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIE 1235 (1669)
Q Consensus 1165 E~~lSLs-Ki~~YLt~sDR~~AWL~~iYllrYr--------vLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~s 1235 (1669)
+...+.. -+..|...++-..+.-...+.++.. ..+-+.|...|...+|..+ +....+. ++...-.
T Consensus 222 p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~v---f~~m~~~---~~vt~n~ 295 (697)
T PLN03081 222 AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCV---FDGMPEK---TTVAWNS 295 (697)
T ss_pred CChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHH---HHhCCCC---ChhHHHH
Confidence 3223333 3345555554433322222222222 2245677788888888776 5544322 3333334
Q ss_pred HHHHHHhhhcCCcchhhhh-------hhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCchhH--HHHHHHHhh
Q 000323 1236 MAVNSVELYSNGESLEKET-------NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLY-PSCLEL--VLMKARLQK 1305 (1669)
Q Consensus 1236 mA~dYY~~~~ndesla~~~-------~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~-P~d~eL--~L~AAyL~~ 1305 (1669)
| +..|.. .|+-+.+... +.+.+..|=..+|+.+..+++.+.|..++..+++.. +.++.+ .|...|...
T Consensus 296 l-i~~y~~-~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~ 373 (697)
T PLN03081 296 M-LAGYAL-HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW 373 (697)
T ss_pred H-HHHHHh-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHC
Confidence 4 344443 3433333332 122233343355666666889999999999999986 555555 788888665
Q ss_pred cccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHH-----------H----hhhhccccccc
Q 000323 1306 HDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWF-----------H----SVWKVQYSQVE 1370 (1669)
Q Consensus 1306 K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff-----------~----gia~~Q~~~de 1370 (1669)
.. .++|..+|+++.. | |.. .|+-+|....+.|+.++|+++.++.. . ++++.+ ..++
T Consensus 374 G~-~~~A~~vf~~m~~--~-d~~----t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g-~~~~ 444 (697)
T PLN03081 374 GR-MEDARNVFDRMPR--K-NLI----SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG-LSEQ 444 (697)
T ss_pred CC-HHHHHHHHHhCCC--C-Cee----eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC-cHHH
Confidence 44 8899999998754 3 555 79999999999999999999999822 1 111111 4555
Q ss_pred chhhhcccCC--CCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHH
Q 000323 1371 ISDPLVADMS--HSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHA 1448 (1669)
Q Consensus 1371 ALDaLrkgns--~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYA 1448 (1669)
|...|+.-.. .+.+ ....| ..|-++|.+ .|+++||+..|+++ ...|+- .+|+--+
T Consensus 445 a~~~f~~m~~~~g~~p------~~~~y-----------~~li~~l~r--~G~~~eA~~~~~~~-~~~p~~---~~~~~Ll 501 (697)
T PLN03081 445 GWEIFQSMSENHRIKP------RAMHY-----------ACMIELLGR--EGLLDEAYAMIRRA-PFKPTV---NMWAALL 501 (697)
T ss_pred HHHHHHHHHHhcCCCC------Cccch-----------HhHHHHHHh--cCCHHHHHHHHHHC-CCCCCH---HHHHHHH
Confidence 6666553211 1111 11234 778888888 88888888888775 233432 3344333
Q ss_pred HHHhcCCCCCCcccchhh
Q 000323 1449 MLLLINESEPKEGAPISW 1466 (1669)
Q Consensus 1449 YFLS~e~~dL~KAeqMS~ 1466 (1669)
--.. ...+++.|+.+..
T Consensus 502 ~a~~-~~g~~~~a~~~~~ 518 (697)
T PLN03081 502 TACR-IHKNLELGRLAAE 518 (697)
T ss_pred HHHH-HcCCcHHHHHHHH
Confidence 2222 2334555555443
No 34
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.01 E-value=1.6e-08 Score=119.46 Aligned_cols=277 Identities=10% Similarity=-0.073 Sum_probs=182.8
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-----HHHHHHhcCCCcccchh
Q 000323 1027 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-----LWLMYINSRTPLNHRLD 1101 (1669)
Q Consensus 1027 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-----LwlmYInsr~slddrl~ 1101 (1669)
..|++..|...+.++.+..|+....+...+.++.++++.+.++++|++|.+..|++.. .+.+++..+
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~-------- 167 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQN-------- 167 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCC--------
Confidence 4588999999999999999998888888899999999999999999999999998852 477888888
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHh---hc
Q 000323 1102 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTC---LT 1178 (1669)
Q Consensus 1102 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~Y---Lt 1178 (1669)
.|+.|+..++++.+.. |+. .+++..+..+|.++|+++.|+..+.++...... ++....-.....+ +.
T Consensus 168 ~~~~Al~~l~~l~~~~-P~~-------~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~--~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 168 ELHAARHGVDKLLEMA-PRH-------KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF--DDEEFADLEQKAEIGLLD 237 (409)
T ss_pred CHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHH
Confidence 8999999999999999 554 799999999999999999999988888862211 1111110011111 10
Q ss_pred cCCc--chh-----hHHH--HH--HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCC
Q 000323 1179 ISDK--LIF-----WVCC--VY--LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNG 1247 (1669)
Q Consensus 1179 ~sDR--~~A-----WL~~--iY--llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~nd 1247 (1669)
..+. ... |-.. .+ ........+..+...|...+|+.+ ..+.++..|++....
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~---l~~~l~~~pd~~~~~-------------- 300 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEI---IFDGLKKLGDDRAIS-------------- 300 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHH---HHHHHhhCCCcccch--------------
Confidence 0000 000 1000 00 112222223333333333333332 222222222221100
Q ss_pred cchhhhhhhchhhHhHHHHHHHHHH--hcCHHHHHHHHHHHHHhCCCch--hHHHHHHHHhhcc-cCCccHHHHH--HHH
Q 000323 1248 ESLEKETNLRSAHCFAVNHIWCMAV--LNGLECSMNLLEKYIKLYPSCL--ELVLMKARLQKHD-FGDLSSVGFE--EAL 1320 (1669)
Q Consensus 1248 esla~~~~~kt~~~fKLN~IR~lI~--LEDse~A~~LfdklLk~~P~d~--eL~L~AAyL~~K~-m~~~A~svle--~AL 1320 (1669)
+-.++.++. .++.+.++.++++.++.+|.+. .+.+...++..+. ...+|+..|+ .++
T Consensus 301 ----------------~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~ 364 (409)
T TIGR00540 301 ----------------LPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC 364 (409)
T ss_pred ----------------hHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh
Confidence 012444433 3477888999999999999999 7744444443332 2778999999 688
Q ss_pred HhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000323 1321 IKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFH 1359 (1669)
Q Consensus 1321 ~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~ 1359 (1669)
...|++.. .. -|....++.|+.++|.++-++...
T Consensus 365 ~~~p~~~~----~~-~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 365 KEQLDAND----LA-MAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hcCCCHHH----HH-HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88898876 22 568889999999999888776433
No 35
>PLN03077 Protein ECB2; Provisional
Probab=98.99 E-value=1.1e-07 Score=121.56 Aligned_cols=406 Identities=13% Similarity=0.105 Sum_probs=246.5
Q ss_pred hHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhh--CCCCHH
Q 000323 1009 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEA--DPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKH--NEGSYA 1084 (1669)
Q Consensus 1009 d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEI--NPtSaeaWy~yl~lY~~~~~~eea~emlekAVel--nP~NY~ 1084 (1669)
|...|=.+...|... |+++.|+.+|...++. .| +...|..++..+...+....+.+++..+++. .|+-+.
T Consensus 252 d~~s~n~li~~~~~~-----g~~~eAl~lf~~M~~~g~~P-d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~ 325 (857)
T PLN03077 252 DCISWNAMISGYFEN-----GECLEGLELFFTMRELSVDP-DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSV 325 (857)
T ss_pred CcchhHHHHHHHHhC-----CCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHH
Confidence 445676666666654 5569999999998775 45 4556667777778888888888898888764 344444
Q ss_pred ---HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccC
Q 000323 1085 ---LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATG 1161 (1669)
Q Consensus 1085 ---LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~ 1161 (1669)
|-.+|.+.+ .+++|+.+|++|.. ++ ...|..|+..|++.|++++|+..+.++.. .
T Consensus 326 ~n~Li~~y~k~g--------~~~~A~~vf~~m~~---~d--------~~s~n~li~~~~~~g~~~~A~~lf~~M~~---~ 383 (857)
T PLN03077 326 CNSLIQMYLSLG--------SWGEAEKVFSRMET---KD--------AVSWTAMISGYEKNGLPDKALETYALMEQ---D 383 (857)
T ss_pred HHHHHHHHHhcC--------CHHHHHHHHhhCCC---CC--------eeeHHHHHHHHHhCCCHHHHHHHHHHHHH---h
Confidence 788999998 78999999999854 34 45799999999999999999999998875 3
Q ss_pred CCCcccchHHHHH-HhhccCCcchhhHHHHHHHHhhcc--------chHHHhhhhhhhhhhccCCCCcccchhhHHHHHH
Q 000323 1162 SNDRHSLFLSDIL-TCLTISDKLIFWVCCVYLVIYRKL--------PDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIK 1232 (1669)
Q Consensus 1162 g~sE~~lSLsKi~-~YLt~sDR~~AWL~~iYllrYrvL--------PGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalA 1232 (1669)
|..|...++..+. .|-..++-..+.-...+..+.+.. +-+.|...|+.++|+.+ +.+..+.+. ..
T Consensus 384 g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~v---f~~m~~~d~---vs 457 (857)
T PLN03077 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV---FHNIPEKDV---IS 457 (857)
T ss_pred CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHH---HHhCCCCCe---ee
Confidence 4444344554444 555555554443333332222222 23556667777777666 444432211 11
Q ss_pred HHHHHHHHHhhhcCCcchhhhhh------hchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhH--HHHHHHH
Q 000323 1233 LIEMAVNSVELYSNGESLEKETN------LRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPS-CLEL--VLMKARL 1303 (1669)
Q Consensus 1233 L~smA~dYY~~~~ndesla~~~~------~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~-d~eL--~L~AAyL 1303 (1669)
.-.| +..|.. .+.-..+...- .+.+..+=...|..+...++.+.+.+++..+++.... +.-+ .|...|.
T Consensus 458 ~~~m-i~~~~~-~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~ 535 (857)
T PLN03077 458 WTSI-IAGLRL-NNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYV 535 (857)
T ss_pred HHHH-HHHHHH-CCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHH
Confidence 1112 111211 11111111110 0111111122233333355667777777776665432 1222 5556664
Q ss_pred hhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH---------------HHhhhhccccc
Q 000323 1304 QKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRW---------------FHSVWKVQYSQ 1368 (1669)
Q Consensus 1304 ~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~f---------------f~gia~~Q~~~ 1368 (1669)
.... .++|+.+|+.. +.+.. .|+-+|....+.|+.++|+++.++- +.++++.+ .-
T Consensus 536 k~G~-~~~A~~~f~~~----~~d~~----s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g-~v 605 (857)
T PLN03077 536 RCGR-MNYAWNQFNSH----EKDVV----SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG-MV 605 (857)
T ss_pred HcCC-HHHHHHHHHhc----CCChh----hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC-hH
Confidence 4443 67888888775 55666 8999999999999999999999871 11122111 44
Q ss_pred ccchhhhcccC--CCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHH
Q 000323 1369 VEISDPLVADM--SHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVRE 1446 (1669)
Q Consensus 1369 deALDaLrkgn--s~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNN 1446 (1669)
++|+..|..-. ..+.+ ..+. |..|.++|.+ .|+++||...|++. ...|+-.+..+|.+
T Consensus 606 ~ea~~~f~~M~~~~gi~P------~~~~-----------y~~lv~~l~r--~G~~~eA~~~~~~m-~~~pd~~~~~aLl~ 665 (857)
T PLN03077 606 TQGLEYFHSMEEKYSITP------NLKH-----------YACVVDLLGR--AGKLTEAYNFINKM-PITPDPAVWGALLN 665 (857)
T ss_pred HHHHHHHHHHHHHhCCCC------chHH-----------HHHHHHHHHh--CCCHHHHHHHHHHC-CCCCCHHHHHHHHH
Confidence 55666555321 11111 1233 4899999999 99999999999985 46676545555555
Q ss_pred HHHHHhcCCCCCCcccchhhhHHHH------HHHHhh-hcccccccc
Q 000323 1447 HAMLLLINESEPKEGAPISWQLKLL------NSYLDR-ARSLPYLKL 1486 (1669)
Q Consensus 1447 YAYFLS~e~~dL~KAeqMS~~~KtV------sTYLDT-AWILf~~~~ 1486 (1669)
|+.+ ..+++.|+.+.. +++ .+|... +|++...++
T Consensus 666 -ac~~---~~~~e~~e~~a~--~l~~l~p~~~~~y~ll~n~ya~~g~ 706 (857)
T PLN03077 666 -ACRI---HRHVELGELAAQ--HIFELDPNSVGYYILLCNLYADAGK 706 (857)
T ss_pred -HHHH---cCChHHHHHHHH--HHHhhCCCCcchHHHHHHHHHHCCC
Confidence 3322 456777776655 444 344444 777777777
No 36
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=3.8e-07 Score=109.17 Aligned_cols=276 Identities=16% Similarity=0.187 Sum_probs=194.9
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHh-------CCCC------HHHHHHHHHHHHhCCCCchHHHHHHHHHh
Q 000323 1011 EQCVEMALLILNQDANKLEGMKKALSLLSRALEA-------DPTS------EILWITYLLIFYSNTNSVGKDDMFSYSVK 1077 (1669)
Q Consensus 1011 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEI-------NPtS------aeaWy~yl~lY~~~~~~eea~emlekAVe 1077 (1669)
+.-+..|+.+|-.... +.|+.|.+.+...... |--+ ++++.+-+-++.-.++..++++.|.+||+
T Consensus 277 Da~l~~~l~~l~~~~~--e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 277 DAALAEALEALEKGLE--EGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred hhhHHHHHHHHHhhCc--hhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 4445555555544432 4556665555433221 1111 34444444444455667789999999999
Q ss_pred hCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHH
Q 000323 1078 HNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRIS 1153 (1669)
Q Consensus 1078 lnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~ 1153 (1669)
+.|.+-. ++.+|+... +=++....|-.+..-+ |.. -|+++.+.|++...++|+.|+.-
T Consensus 355 l~~~~~~lyI~~a~~y~d~~--------~~~~~~~~F~~A~~ld-p~n-------~dvYyHRgQm~flL~q~e~A~aD-- 416 (606)
T KOG0547|consen 355 LDPAFNSLYIKRAAAYADEN--------QSEKMWKDFNKAEDLD-PEN-------PDVYYHRGQMRFLLQQYEEAIAD-- 416 (606)
T ss_pred cCcccchHHHHHHHHHhhhh--------ccHHHHHHHHHHHhcC-CCC-------CchhHhHHHHHHHHHHHHHHHHH--
Confidence 9987655 778888776 4577777776655555 666 89999999999999999999871
Q ss_pred hhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHH
Q 000323 1154 RLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKL 1233 (1669)
Q Consensus 1154 rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL 1233 (1669)
+ ++....+|+++++.
T Consensus 417 --F---------------------------------------------------------------~Kai~L~pe~~~~~ 431 (606)
T KOG0547|consen 417 --F---------------------------------------------------------------QKAISLDPENAYAY 431 (606)
T ss_pred --H---------------------------------------------------------------HHHhhcChhhhHHH
Confidence 1 11123478999999
Q ss_pred HHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhhcccCCcc
Q 000323 1234 IEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLS 1312 (1669)
Q Consensus 1234 ~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~K~m~~~A 1312 (1669)
+.+++-.|++ ...+++...|....+.-|.|+++ .+.+.-|.-++.=++|
T Consensus 432 iQl~~a~Yr~------------------------------~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A 481 (606)
T KOG0547|consen 432 IQLCCALYRQ------------------------------HKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKA 481 (606)
T ss_pred HHHHHHHHHH------------------------------HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHH
Confidence 9987666663 04567888999999999999999 8998888776668899
Q ss_pred HHHHHHHHHhCCC------CCc-hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCC
Q 000323 1313 SVGFEEALIKWPK------GVP-GIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPE 1385 (1669)
Q Consensus 1313 ~svle~AL~~~Pk------Na~-g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~e 1385 (1669)
...|+.|+.++|+ |+. ++..+ ++...|. +++++|+.||++ ++. +.+
T Consensus 482 ~k~YD~ai~LE~~~~~~~v~~~plV~Ka---~l~~qwk-~d~~~a~~Ll~K-----------------A~e-----~Dp- 534 (606)
T KOG0547|consen 482 VKQYDKAIELEPREHLIIVNAAPLVHKA---LLVLQWK-EDINQAENLLRK-----------------AIE-----LDP- 534 (606)
T ss_pred HHHHHHHHhhccccccccccchhhhhhh---Hhhhchh-hhHHHHHHHHHH-----------------HHc-----cCc-
Confidence 9999999999999 665 44433 2444576 699999999976 222 111
Q ss_pred CCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHH
Q 000323 1386 STSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREH 1447 (1669)
Q Consensus 1386 s~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNY 1447 (1669)
.+| | ++.+++-....+|+.+||.+.||+++.++... ..-++=|
T Consensus 535 -----kce-------~-----A~~tlaq~~lQ~~~i~eAielFEksa~lArt~--~E~~~a~ 577 (606)
T KOG0547|consen 535 -----KCE-------Q-----AYETLAQFELQRGKIDEAIELFEKSAQLARTE--SEMVHAY 577 (606)
T ss_pred -----hHH-------H-----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH--HHHHHHH
Confidence 122 3 78787766666999999999999999999876 4444433
No 37
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.81 E-value=9.6e-07 Score=90.41 Aligned_cols=130 Identities=18% Similarity=0.206 Sum_probs=104.6
Q ss_pred chHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH---
Q 000323 1008 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--- 1084 (1669)
Q Consensus 1008 ~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~--- 1084 (1669)
...+.++.+|..++.. |+++.|+..|.++++.+|+++.+|+.++.+|...+...++.++|++|+++.|.+..
T Consensus 29 ~~~~~~~~la~~~~~~-----~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 103 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQ-----GDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLN 103 (234)
T ss_pred cHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence 3457788888888776 45799999999999999999999999999999999888899999999999988765
Q ss_pred -HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCC-CCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1085 -LWLMYINSRTPLNHRLDAYDAALSVLCRCASASD-GDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1085 -LwlmYInsr~slddrl~~YdkAI~aLe~las~~~-~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
++.+|...+ .|++|+..|.+.....+ +.. .+++..+..+|...|++++|+..+.+...
T Consensus 104 ~~~~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (234)
T TIGR02521 104 NYGTFLCQQG--------KYEQAMQQFEQAIEDPLYPQP-------ARSLENAGLCALKAGDFDKAEKYLTRALQ 163 (234)
T ss_pred HHHHHHHHcc--------cHHHHHHHHHHHHhccccccc-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566677777 78899998888766421 122 46677788888899999999887766654
No 38
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.81 E-value=4.6e-08 Score=113.13 Aligned_cols=156 Identities=24% Similarity=0.285 Sum_probs=128.9
Q ss_pred hhhhccchHHHHHHHHHHHhcccc-------cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHH
Q 000323 1002 KLKQVELSNEQCVEMALLILNQDA-------NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSY 1074 (1669)
Q Consensus 1002 ~le~~~~d~qlWLelAl~~Lnq~~-------n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlek 1074 (1669)
.+...|.|+++||+++...-.-.. ....-.+..+++|.+||+.||.+..+|..|+.++.+.-..+.+.+.+++
T Consensus 11 ~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~ 90 (321)
T PF08424_consen 11 RVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEE 90 (321)
T ss_pred HHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 788899999999999954333221 2234467889999999999999999999999999999888889999999
Q ss_pred HHhhCCCCHHHHHHHHhcCC------CcccchhhHHHHHHHHHHhhhcC---CCCcchhhhhhHHHHHHHHHHHHHhcCH
Q 000323 1075 SVKHNEGSYALWLMYINSRT------PLNHRLDAYDAALSVLCRCASAS---DGDEMHASACILDLFLQMLQCFCMSGNT 1145 (1669)
Q Consensus 1075 AVelnP~NY~LwlmYInsr~------slddrl~~YdkAI~aLe~las~~---~~Dr~~~Sa~iLDILL~LvqLY~qSGny 1145 (1669)
++..+|+++.||..||+..- ++.+-...|.+++..|....... ..+..+..-.++++++.+..+..++|-.
T Consensus 91 ~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~ 170 (321)
T PF08424_consen 91 LLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYT 170 (321)
T ss_pred HHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCch
Confidence 99999999999999999653 35667778888888886654432 1234456779999999999999999999
Q ss_pred HHHHHHHHhhcc
Q 000323 1146 EKAIQRISRLLI 1157 (1669)
Q Consensus 1146 dKAI~tl~rLEq 1157 (1669)
+.|++.+..+..
T Consensus 171 E~Ava~~Qa~lE 182 (321)
T PF08424_consen 171 ERAVALWQALLE 182 (321)
T ss_pred HHHHHHHHHHHH
Confidence 999998888876
No 39
>PRK12370 invasion protein regulator; Provisional
Probab=98.76 E-value=1.3e-07 Score=116.25 Aligned_cols=192 Identities=14% Similarity=0.002 Sum_probs=145.2
Q ss_pred hhhhccchHHHHHHHHHHHhcccc----cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHh
Q 000323 1002 KLKQVELSNEQCVEMALLILNQDA----NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVK 1077 (1669)
Q Consensus 1002 ~le~~~~d~qlWLelAl~~Lnq~~----n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVe 1077 (1669)
-++..|.....|..+|.-++.... ...+.++.|...+.+|++++|+++.+|..++.++...+...++...|++|++
T Consensus 287 Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 366 (553)
T PRK12370 287 CVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANL 366 (553)
T ss_pred HHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344556667888888876553321 2456789999999999999999999999999999999999999999999999
Q ss_pred hCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHH
Q 000323 1078 HNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRIS 1153 (1669)
Q Consensus 1078 lnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~ 1153 (1669)
++|++.. ++..|...+ .|++|+..|+++.+.+ |+. ....+.++.++...|++++|+..+.
T Consensus 367 l~P~~~~a~~~lg~~l~~~G--------~~~eAi~~~~~Al~l~-P~~-------~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 367 LSPISADIKYYYGWNLFMAG--------QLEEALQTINECLKLD-PTR-------AAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred hCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHhcC-CCC-------hhhHHHHHHHHHhccCHHHHHHHHH
Confidence 9999876 666777777 7899999999999988 453 3344444555667899999999776
Q ss_pred hhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHH
Q 000323 1154 RLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKL 1233 (1669)
Q Consensus 1154 rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL 1233 (1669)
++.. .. .| .+. .+..++|.+|...|..+||... +.++...+|+...+.
T Consensus 431 ~~l~--~~--~p--------------~~~-----------~~~~~la~~l~~~G~~~eA~~~---~~~~~~~~~~~~~~~ 478 (553)
T PRK12370 431 ELRS--QH--LQ--------------DNP-----------ILLSMQVMFLSLKGKHELARKL---TKEISTQEITGLIAV 478 (553)
T ss_pred HHHH--hc--cc--------------cCH-----------HHHHHHHHHHHhCCCHHHHHHH---HHHhhhccchhHHHH
Confidence 6653 11 11 111 1223457777888999999888 788888888888888
Q ss_pred HHHHHHHHh
Q 000323 1234 IEMAVNSVE 1242 (1669)
Q Consensus 1234 ~smA~dYY~ 1242 (1669)
..++ .+|.
T Consensus 479 ~~l~-~~~~ 486 (553)
T PRK12370 479 NLLY-AEYC 486 (553)
T ss_pred HHHH-HHHh
Confidence 7774 4443
No 40
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.75 E-value=3.9e-06 Score=110.57 Aligned_cols=272 Identities=13% Similarity=0.066 Sum_probs=158.4
Q ss_pred hhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhCCCCchHHHHHHHHHhhC--CCCHH---HHHHHHhcCCCcccchhh
Q 000323 1029 EGMKKALSLLSRALEADPT-SEILWITYLLIFYSNTNSVGKDDMFSYSVKHN--EGSYA---LWLMYINSRTPLNHRLDA 1102 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPt-SaeaWy~yl~lY~~~~~~eea~emlekAVeln--P~NY~---LwlmYInsr~slddrl~~ 1102 (1669)
++++.|+.+|....+.... +..+|..++..|.+.+.-.++.+.|+...+.. |+... |...|.+.+ .
T Consensus 451 g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G--------~ 522 (1060)
T PLN03218 451 QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG--------Q 522 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc--------C
Confidence 5568888888888876654 67778888888888888777888888877643 32222 556677776 6
Q ss_pred HHHHHHHHHHhhhcC-CCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHH-HHHHhhccC
Q 000323 1103 YDAALSVLCRCASAS-DGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLS-DILTCLTIS 1180 (1669)
Q Consensus 1103 YdkAI~aLe~las~~-~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLs-Ki~~YLt~s 1180 (1669)
+++|+.+|.+|.+.. .|| .-++..|+..|++.|++++|.+.+..+... ..|..|...+.. -|..|...+
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD--------~vTYnsLI~a~~k~G~~deA~~lf~eM~~~-~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPD--------RVVFNALISACGQSGAVDRAFDVLAEMKAE-THPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHCC
Confidence 788888888876532 355 567888888888888888888877777531 122233112222 222344444
Q ss_pred CcchhhHHHHHHH---------HhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchh
Q 000323 1181 DKLIFWVCCVYLV---------IYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLE 1251 (1669)
Q Consensus 1181 DR~~AWL~~iYll---------rYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla 1251 (1669)
+-..|+-.+.... .|..| ...|.+.|...+|+. ++... . . .
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsL-I~ay~k~G~~deAl~------------------lf~eM-~---~-~------ 643 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIA-VNSCSQKGDWDFALS------------------IYDDM-K---K-K------ 643 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHH-HHHHHhcCCHHHHHH------------------HHHHH-H---H-c------
Confidence 4332311111111 11111 112222222222222 22110 0 0 0
Q ss_pred hhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCchhH-HHHHHHHhhcccCCccHHHHHHHHHh--CCCC
Q 000323 1252 KETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLY--PSCLEL-VLMKARLQKHDFGDLSSVGFEEALIK--WPKG 1326 (1669)
Q Consensus 1252 ~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~--P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~~--~PkN 1326 (1669)
.-..+..+=..+|..+...++.+.|.++|+.+.+.. |...-. .|..+|....+ .++|+.+|+++... .|+
T Consensus 644 ---Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~-~eeA~~lf~eM~~~g~~Pd- 718 (1060)
T PLN03218 644 ---GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN-WKKALELYEDIKSIKLRPT- 718 (1060)
T ss_pred ---CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCC-
Confidence 001111111233444444678888888888888763 333333 77777765554 77888888887653 443
Q ss_pred CchHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000323 1327 VPGIQCIWNQYVEYALQNGRHDFAAELMDR 1356 (1669)
Q Consensus 1327 a~g~~caW~QLIq~al~~en~d~Ai~Lc~~ 1356 (1669)
.. .|+.||....+.|++++|.++..+
T Consensus 719 vv----tyN~LI~gy~k~G~~eeAlelf~e 744 (1060)
T PLN03218 719 VS----TMNALITALCEGNQLPKALEVLSE 744 (1060)
T ss_pred HH----HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 23 688888888888888888888876
No 41
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=98.72 E-value=3.2e-09 Score=79.92 Aligned_cols=22 Identities=55% Similarity=1.307 Sum_probs=21.0
Q ss_pred cceeecccc-cccCCCCcchhhh
Q 000323 856 PLCMYELRG-KCNNDECPWQHVK 877 (1669)
Q Consensus 856 ~lC~fel~G-~CNd~~C~wQH~~ 877 (1669)
|||+|||+| +|||++|.|||+|
T Consensus 1 ~lC~yEl~Gg~Cnd~~C~~QHfr 23 (23)
T PF10650_consen 1 PLCPYELTGGVCNDPDCEFQHFR 23 (23)
T ss_pred CCCccccCCCeeCCCCCCccccC
Confidence 699999998 9999999999986
No 42
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.72 E-value=4.6e-06 Score=104.77 Aligned_cols=338 Identities=10% Similarity=0.025 Sum_probs=187.4
Q ss_pred hHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhCCCCchHHHHHHHHHhhC--CCCHH-
Q 000323 1009 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPT-SEILWITYLLIFYSNTNSVGKDDMFSYSVKHN--EGSYA- 1084 (1669)
Q Consensus 1009 d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPt-SaeaWy~yl~lY~~~~~~eea~emlekAVeln--P~NY~- 1084 (1669)
+...|=.+...+... |+++.|+.+|...++..+. +...|..++..+...+.-..+.+.+..+++.. |+-+.
T Consensus 188 ~~~t~n~li~~~~~~-----g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~ 262 (697)
T PLN03081 188 NLASWGTIIGGLVDA-----GNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVS 262 (697)
T ss_pred CeeeHHHHHHHHHHC-----cCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeH
Confidence 344555555555444 5578888888888876543 45667777777777777666777777666543 22222
Q ss_pred --HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCC
Q 000323 1085 --LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGS 1162 (1669)
Q Consensus 1085 --LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g 1162 (1669)
|-.+|.+.+ .+++|+.+|++|... + ...|-.|+..|++.|++++|+..+.++.. .|
T Consensus 263 n~Li~~y~k~g--------~~~~A~~vf~~m~~~---~--------~vt~n~li~~y~~~g~~~eA~~lf~~M~~---~g 320 (697)
T PLN03081 263 CALIDMYSKCG--------DIEDARCVFDGMPEK---T--------TVAWNSMLAGYALHGYSEEALCLYYEMRD---SG 320 (697)
T ss_pred HHHHHHHHHCC--------CHHHHHHHHHhCCCC---C--------hhHHHHHHHHHHhCCCHHHHHHHHHHHHH---cC
Confidence 778999988 789999999888543 3 56899999999999999999999888874 34
Q ss_pred CCcccchHHH-HHHhhccCCcchhhHHHHHHHHhhc--------cchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHH
Q 000323 1163 NDRHSLFLSD-ILTCLTISDKLIFWVCCVYLVIYRK--------LPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKL 1233 (1669)
Q Consensus 1163 ~sE~~lSLsK-i~~YLt~sDR~~AWL~~iYllrYrv--------LPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL 1233 (1669)
..+...+... +..|...++-..+.-...+.++... .+.+.|...|.-++|..+ +....+ | ++...
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~v---f~~m~~--~-d~~t~ 394 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNV---FDRMPR--K-NLISW 394 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHH---HHhCCC--C-CeeeH
Confidence 3332334333 4456555554444222222222211 122333344444444433 222211 1 11111
Q ss_pred HHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCchhH-HHHHHHHhhcccCC
Q 000323 1234 IEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIK--LYPSCLEL-VLMKARLQKHDFGD 1310 (1669)
Q Consensus 1234 ~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk--~~P~d~eL-~L~AAyL~~K~m~~ 1310 (1669)
- .+|..|...++.++|+++|+++++ ..|+.+.. .|..++-... ..+
T Consensus 395 n------------------------------~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g-~~~ 443 (697)
T PLN03081 395 N------------------------------ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG-LSE 443 (697)
T ss_pred H------------------------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC-cHH
Confidence 1 224444445566666666666554 23444444 4444443332 255
Q ss_pred ccHHHHHHHHHh---CCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH--------HHH---hhhhcccccccchhhhc
Q 000323 1311 LSSVGFEEALIK---WPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR--------WFH---SVWKVQYSQVEISDPLV 1376 (1669)
Q Consensus 1311 ~A~svle~AL~~---~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~--------ff~---gia~~Q~~~deALDaLr 1376 (1669)
+|..+|+.+... .|+-. .|.-+|...-+.|++++|.++.++ .|. +.+......+.|..+++
T Consensus 444 ~a~~~f~~m~~~~g~~p~~~-----~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~ 518 (697)
T PLN03081 444 QGWEIFQSMSENHRIKPRAM-----HYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAE 518 (697)
T ss_pred HHHHHHHHHHHhcCCCCCcc-----chHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 666666665543 22221 234445666666666666665544 011 11111112233333333
Q ss_pred ccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhh
Q 000323 1377 ADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKA 1434 (1669)
Q Consensus 1377 kgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALka 1434 (1669)
+.... .+. ....| .+|..+|.. .|+++||...++.....
T Consensus 519 ~l~~~-----~p~-~~~~y-----------~~L~~~y~~--~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 519 KLYGM-----GPE-KLNNY-----------VVLLNLYNS--SGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHhCC-----CCC-CCcch-----------HHHHHHHHh--CCCHHHHHHHHHHHHHc
Confidence 22111 111 12345 788889999 99999999999876643
No 43
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=3e-06 Score=101.78 Aligned_cols=144 Identities=15% Similarity=0.046 Sum_probs=94.5
Q ss_pred hcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHHhCCCCCc-hHHHHHHHHH--HHHHHcCCh
Q 000323 1273 LNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVP-GIQCIWNQYV--EYALQNGRH 1347 (1669)
Q Consensus 1273 LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~-g~~caW~QLI--q~al~~en~ 1347 (1669)
.++.-.+...|+.+++++|....| -+.+.|++..+ +++....|..|..++|.|+. ||+..=+-+| +++-...++
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~-~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQ-SEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhc-cHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 569999999999999999999996 88888888887 99999999999999999999 5554422111 122233344
Q ss_pred HHHHHHHHH---HHH--hhhhccc-ccccchhhhccc--CCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhc
Q 000323 1348 DFAAELMDR---WFH--SVWKVQY-SQVEISDPLVAD--MSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQN 1419 (1669)
Q Consensus 1348 d~Ai~Lc~~---ff~--gia~~Q~-~~deALDaLrkg--ns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg 1419 (1669)
++++.|--. -|- +++.|.. +-.++..+|... -+|. -++.| .+.+.+|-- ++
T Consensus 418 ~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~--------~~Evy-----------~~fAeiLtD--qq 476 (606)
T KOG0547|consen 418 QKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN--------CPEVY-----------NLFAEILTD--QQ 476 (606)
T ss_pred HHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------CchHH-----------HHHHHHHhh--HH
Confidence 444444333 111 1222211 333334344333 2221 24555 667777777 78
Q ss_pred CHHHHHHHHHHHHhhccCC
Q 000323 1420 DWNEARLAIDAALKAAASE 1438 (1669)
Q Consensus 1420 ~~~EAfaAYDKALkanp~N 1438 (1669)
+++.|..-||+|+...|.+
T Consensus 477 qFd~A~k~YD~ai~LE~~~ 495 (606)
T KOG0547|consen 477 QFDKAVKQYDKAIELEPRE 495 (606)
T ss_pred hHHHHHHHHHHHHhhcccc
Confidence 8888888888888887775
No 44
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.68 E-value=1.2e-06 Score=101.63 Aligned_cols=355 Identities=13% Similarity=0.035 Sum_probs=221.5
Q ss_pred cchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH--
Q 000323 1007 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-- 1084 (1669)
Q Consensus 1007 ~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-- 1084 (1669)
+.|++--+++-...|.. ++|..||.-|-.|+|.||++=.++|.-+-.|..+|....+..-|.+-+++-|+=+.
T Consensus 35 ~advekhlElGk~lla~-----~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~AR 109 (504)
T KOG0624|consen 35 PADVEKHLELGKELLAR-----GQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAAR 109 (504)
T ss_pred HHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHH
Confidence 35556666665555544 67899999999999999999999999999999999988899999999999987665
Q ss_pred --HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCC---cchhh--hhhHHHHH--HHHHHHHHhcCHHHHHHHHHhh
Q 000323 1085 --LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD---EMHAS--ACILDLFL--QMLQCFCMSGNTEKAIQRISRL 1155 (1669)
Q Consensus 1085 --LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~D---r~~~S--a~iLDILL--~LvqLY~qSGnydKAI~tl~rL 1155 (1669)
-+.+.++++ .+++|..=+.......+.. ++..| +-|.+-+. +++.-+.-+|++..||..|+.|
T Consensus 110 iQRg~vllK~G--------ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 110 IQRGVVLLKQG--------ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred HHhchhhhhcc--------cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 556778888 8899988887666655222 12222 23444433 3444455678999999999999
Q ss_pred cccccCCCCcccchHHHHH--HhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHH
Q 000323 1156 LIPATGSNDRHSLFLSDIL--TCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKL 1233 (1669)
Q Consensus 1156 Eq~Al~g~sE~~lSLsKi~--~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL 1233 (1669)
+. ..+=+.+|-.++ -|+..++. ...||+++. +.+-.-|+.-.+
T Consensus 182 lE-----i~~Wda~l~~~Rakc~i~~~e~----k~AI~Dlk~--------------------------askLs~DnTe~~ 226 (504)
T KOG0624|consen 182 LE-----IQPWDASLRQARAKCYIAEGEP----KKAIHDLKQ--------------------------ASKLSQDNTEGH 226 (504)
T ss_pred Hh-----cCcchhHHHHHHHHHHHhcCcH----HHHHHHHHH--------------------------HHhccccchHHH
Confidence 86 333122222222 23333333 233444433 222222444455
Q ss_pred HHHHHHHHhhhcCCcchhhhh-------hhchhhHhHH-----------HHHHHHHHhcCHHHHHHHHHHHHHhCCCchh
Q 000323 1234 IEMAVNSVELYSNGESLEKET-------NLRSAHCFAV-----------NHIWCMAVLNGLECSMNLLEKYIKLYPSCLE 1295 (1669)
Q Consensus 1234 ~smA~dYY~~~~ndesla~~~-------~~kt~~~fKL-----------N~IR~lI~LEDse~A~~LfdklLk~~P~d~e 1295 (1669)
++++-=+|. +|+-+.+-.. ++.--.|||- .-+.+.|...+++.|++-..++|+..|+.+.
T Consensus 227 ykis~L~Y~--vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ 304 (504)
T KOG0624|consen 227 YKISQLLYT--VGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETM 304 (504)
T ss_pred HHHHHHHHh--hhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccc
Confidence 555444666 4443333221 2222233332 0033333344999999999999999999887
Q ss_pred HHHH-----HHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccccccc
Q 000323 1296 LVLM-----KARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVE 1370 (1669)
Q Consensus 1296 L~L~-----AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~~~de 1370 (1669)
+.+- +.-....+.+.+|+.++.++|.++|+++. +..+-++..+-.+.||.||.--+....--... .+-.+
T Consensus 305 ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~----~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn-~~~re 379 (504)
T KOG0624|consen 305 IRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQ----VLCDRAEAYLGDEMYDDAIHDYEKALELNESN-TRARE 379 (504)
T ss_pred eeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHH----HHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc-HHHHH
Confidence 7222 22223333477999999999999999999 44444777777778888887654422111111 12222
Q ss_pred chhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHH-HHhhccCC
Q 000323 1371 ISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDA-ALKAAASE 1438 (1669)
Q Consensus 1371 ALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDK-ALkanp~N 1438 (1669)
.++--++.-.+. -.-|+| -|||.=.- -+..|-..||-| |.+|-|+|
T Consensus 380 Gle~Akrlkkqs-------~kRDYY-----------KILGVkRn----AsKqEI~KAYRKlAqkWHPDN 426 (504)
T KOG0624|consen 380 GLERAKRLKKQS-------GKRDYY-----------KILGVKRN----ASKQEITKAYRKLAQKWHPDN 426 (504)
T ss_pred HHHHHHHHHHHh-------ccchHH-----------HHhhhccc----ccHHHHHHHHHHHHHhcCCcc
Confidence 233222221221 236888 78887443 356677788877 57999999
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.67 E-value=3.8e-06 Score=99.62 Aligned_cols=286 Identities=9% Similarity=0.000 Sum_probs=182.2
Q ss_pred HHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHH
Q 000323 1058 IFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFL 1133 (1669)
Q Consensus 1058 lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL 1133 (1669)
+-...|....+...+.++.++.|+... .+..+...+ .+++|...|.+..+.++.+. +.+.+
T Consensus 93 la~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g--------~~~~A~~~l~~a~~~~p~~~-------l~~~~ 157 (409)
T TIGR00540 93 LKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRG--------DEARANQHLEEAAELAGNDN-------ILVEI 157 (409)
T ss_pred HHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHhCCcCc-------hHHHH
Confidence 334667788899999999999987533 456777778 89999999999888874444 56777
Q ss_pred HHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhh
Q 000323 1134 QMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELF 1213 (1669)
Q Consensus 1134 ~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf 1213 (1669)
..++++.++|++++|+..+.++.. ..-.++ .....-...|+..+|- +++.
T Consensus 158 ~~a~l~l~~~~~~~Al~~l~~l~~--~~P~~~-~~l~ll~~~~~~~~d~---------------------------~~a~ 207 (409)
T TIGR00540 158 ARTRILLAQNELHAARHGVDKLLE--MAPRHK-EVLKLAEEAYIRSGAW---------------------------QALD 207 (409)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHHHHhhH---------------------------HHHH
Confidence 789999999999999999999886 221222 2233333344444443 3332
Q ss_pred ccCCCCcccch---hhHHHHHHHHHHHH-HHHhh---hcCCcchhhhh--hh---chhhHhHHHHHHHHHHhcCHHHHHH
Q 000323 1214 AIDWPPVQLED---DEKQRAIKLIEMAV-NSVEL---YSNGESLEKET--NL---RSAHCFAVNHIWCMAVLNGLECSMN 1281 (1669)
Q Consensus 1214 ~I~W~y~~vlk---~EPdnalAL~smA~-dYY~~---~~ndesla~~~--~~---kt~~~fKLN~IR~lI~LEDse~A~~ 1281 (1669)
.+ +..+++ .+|.....+..++. ..... ..+-+.+..-. .+ +-...+-+.+...++..++.++|.+
T Consensus 208 ~~---l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~ 284 (409)
T TIGR00540 208 DI---IDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQE 284 (409)
T ss_pred HH---HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHH
Confidence 22 222221 12332211111110 01100 00000111000 11 1133444455666677889999999
Q ss_pred HHHHHHHhCCCchhH----HHHHHHHhhcccCCccHHHHHHHHHhCCCCC--chHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000323 1282 LLEKYIKLYPSCLEL----VLMKARLQKHDFGDLSSVGFEEALIKWPKGV--PGIQCIWNQYVEYALQNGRHDFAAELMD 1355 (1669)
Q Consensus 1282 LfdklLk~~P~d~eL----~L~AAyL~~K~m~~~A~svle~AL~~~PkNa--~g~~caW~QLIq~al~~en~d~Ai~Lc~ 1355 (1669)
++.+.++..|++..+ .....++... .+..++..+++++...|+++ . +...|...+.+.|+|++|.+..+
T Consensus 285 ~l~~~l~~~pd~~~~~~~~l~~~~~l~~~-~~~~~~~~~e~~lk~~p~~~~~~----ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 285 IIFDGLKKLGDDRAISLPLCLPIPRLKPE-DNEKLEKLIEKQAKNVDDKPKCC----INRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred HHHHHHhhCCCcccchhHHHHHhhhcCCC-ChHHHHHHHHHHHHhCCCChhHH----HHHHHHHHHHHcccHHHHHHHHH
Confidence 999999999999974 3333333332 26678899999999999999 6 67777889999999999998774
Q ss_pred HHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhc
Q 000323 1356 RWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAA 1435 (1669)
Q Consensus 1356 ~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkan 1435 (1669)
+ ..++.. .| | . ....-++..+++ .|+.++|...|.++|+..
T Consensus 360 ~---------------a~a~~~--~p-----------~-------~--~~~~~La~ll~~--~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 360 N---------------VAACKE--QL-----------D-------A--NDLAMAADAFDQ--AGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred H---------------hHHhhc--CC-----------C-------H--HHHHHHHHHHHH--cCCHHHHHHHHHHHHHHH
Confidence 2 001110 01 1 0 012677888888 999999999999998654
No 46
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.67 E-value=1.3e-05 Score=105.92 Aligned_cols=339 Identities=11% Similarity=0.085 Sum_probs=190.9
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhC--CCCHH---HHHHHHhcCCCcccchhhH
Q 000323 1029 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHN--EGSYA---LWLMYINSRTPLNHRLDAY 1103 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVeln--P~NY~---LwlmYInsr~slddrl~~Y 1103 (1669)
+.++.|+.+|....+ | +...|-.++..|.+.+...++.++|++..+.. |+.+. |..+|.+.+ .+
T Consensus 420 g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G--------~v 488 (1060)
T PLN03218 420 RAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG--------KV 488 (1060)
T ss_pred CCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCc--------CH
Confidence 345566666554443 3 45666666666666666666777776666542 32222 556666666 55
Q ss_pred HHHHHHHHHhhhcC-CCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCc
Q 000323 1104 DAALSVLCRCASAS-DGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDK 1182 (1669)
Q Consensus 1104 dkAI~aLe~las~~-~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR 1182 (1669)
++|+++|++|.... .|| ...|..|+..|++.|++++|++.+..+.. .|..|..
T Consensus 489 d~A~~vf~eM~~~Gv~Pd--------vvTynaLI~gy~k~G~~eeAl~lf~~M~~---~Gv~PD~--------------- 542 (1060)
T PLN03218 489 DAMFEVFHEMVNAGVEAN--------VHTFGALIDGCARAGQVAKAFGAYGIMRS---KNVKPDR--------------- 542 (1060)
T ss_pred HHHHHHHHHHHHcCCCCC--------HHHHHHHHHHHHHCcCHHHHHHHHHHHHH---cCCCCCH---------------
Confidence 77777777766532 234 56667777777777777777776666553 2333311
Q ss_pred chhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccch----hhHHHHHHHHHHHHHHHhhhcCCcchhhhhhh--
Q 000323 1183 LIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLED----DEKQRAIKLIEMAVNSVELYSNGESLEKETNL-- 1256 (1669)
Q Consensus 1183 ~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk----~EPdnalAL~smA~dYY~~~~ndesla~~~~~-- 1256 (1669)
..|..| -..|.+.|..++|+.+ +....+ ..|+.... ..+ ++.|.. .|+-+.+...-.
T Consensus 543 ----------vTYnsL-I~a~~k~G~~deA~~l---f~eM~~~~~gi~PD~vTy-naL-I~ay~k-~G~ldeA~elf~~M 605 (1060)
T PLN03218 543 ----------VVFNAL-ISACGQSGAVDRAFDV---LAEMKAETHPIDPDHITV-GAL-MKACAN-AGQVDRAKEVYQMI 605 (1060)
T ss_pred ----------HHHHHH-HHHHHHCCCHHHHHHH---HHHHHHhcCCCCCcHHHH-HHH-HHHHHH-CCCHHHHHHHHHHH
Confidence 112221 1223333444444444 333321 23443211 122 232322 333232222211
Q ss_pred ---ch--hhHhHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCchhH-HHHHHHHhhcccCCccHHHHHHHHHhCC-CCC
Q 000323 1257 ---RS--AHCFAVNHIWCMAVLNGLECSMNLLEKYIKL--YPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWP-KGV 1327 (1669)
Q Consensus 1257 ---kt--~~~fKLN~IR~lI~LEDse~A~~LfdklLk~--~P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~~~P-kNa 1327 (1669)
.+ ...+=-.+|..|...++.++|..+|+.+.+. .|+.... .|..+|....+ .++|..+|+.++.... -+.
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~-~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD-LDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCCH
Confidence 11 1111113466666678999999999999887 6776666 77777765554 7889999999887542 233
Q ss_pred chHHHHHHHHHHHHHHcCChHHHHHHHHHH-----------HHh-hhhc-cc-ccccchhhhcccCCCCCCCCCCCCCcc
Q 000323 1328 PGIQCIWNQYVEYALQNGRHDFAAELMDRW-----------FHS-VWKV-QY-SQVEISDPLVADMSHSSPESTSTSDPE 1393 (1669)
Q Consensus 1328 ~g~~caW~QLIq~al~~en~d~Ai~Lc~~f-----------f~g-ia~~-Q~-~~deALDaLrkgns~i~~es~s~~vSD 1393 (1669)
. .|+-||....+.|++++|.++.... |.. |.-+ +. +.++|+++|+.-... .+..|
T Consensus 685 ~----tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-------Gi~Pd 753 (1060)
T PLN03218 685 V----SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-------GLCPN 753 (1060)
T ss_pred H----HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-------CCCCC
Confidence 3 7889999999999999999998762 111 1111 11 667777777743111 11123
Q ss_pred cccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhh--ccCCcHHHHH
Q 000323 1394 FSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKA--AASEHFKHCV 1444 (1669)
Q Consensus 1394 fy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALka--np~N~~i~cL 1444 (1669)
. .+|..|-.++.+ .|++++|...|+.+++. .|+-....||
T Consensus 754 ~---------~Ty~sLL~a~~k--~G~le~A~~l~~~M~k~Gi~pd~~tynsL 795 (1060)
T PLN03218 754 T---------ITYSILLVASER--KDDADVGLDLLSQAKEDGIKPNLVMCRCI 795 (1060)
T ss_pred H---------HHHHHHHHHHHH--CCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 1 234555567777 88999999999988854 4444333344
No 47
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.60 E-value=9e-06 Score=92.84 Aligned_cols=123 Identities=12% Similarity=-0.019 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----H
Q 000323 1010 NEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----L 1085 (1669)
Q Consensus 1010 ~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----L 1085 (1669)
.+.|..++..+... |.++.|...|.++|+++|+.+.+|+.++.+|...+...++.+.|++|++++|++.. +
T Consensus 64 a~~~~~~g~~~~~~-----g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~l 138 (296)
T PRK11189 64 AQLHYERGVLYDSL-----GLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNR 138 (296)
T ss_pred HHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 36788888876655 45699999999999999999999999999999999999999999999999999876 5
Q ss_pred HHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHh
Q 000323 1086 WLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISR 1154 (1669)
Q Consensus 1086 wlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~r 1154 (1669)
+..|...+ .|++|++.|.+..+.+|.+. .......+....+++++|+..+.+
T Consensus 139 g~~l~~~g--------~~~eA~~~~~~al~~~P~~~---------~~~~~~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 139 GIALYYGG--------RYELAQDDLLAFYQDDPNDP---------YRALWLYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred HHHHHHCC--------CHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHccCCHHHHHHHHHH
Confidence 56677777 88999999999999884332 112222344567889999997754
No 48
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.60 E-value=1.6e-06 Score=98.83 Aligned_cols=114 Identities=13% Similarity=0.046 Sum_probs=99.2
Q ss_pred hhhHHHHHHHHHHHHHh---CCCC-HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccc
Q 000323 1028 LEGMKKALSLLSRALEA---DPTS-EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHR 1099 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEI---NPtS-aeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddr 1099 (1669)
.+..+.++.-|...|+. +|.. +.+|+.++.+|...+...++...|++|++++|++.. ++.+|...+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g------ 112 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAG------ 112 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC------
Confidence 45668899999999974 4443 778999999999999999999999999999999877 677888888
Q ss_pred hhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1100 LDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1100 l~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
.|++|+..|.+..+.. |+. .+.++.+..+|...|+++.|++.+.+..+
T Consensus 113 --~~~~A~~~~~~Al~l~-P~~-------~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 113 --NFDAAYEAFDSVLELD-PTY-------NYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred --CHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999887 565 78899999999999999999998877765
No 49
>PLN03077 Protein ECB2; Provisional
Probab=98.57 E-value=9.1e-06 Score=104.35 Aligned_cols=347 Identities=10% Similarity=0.023 Sum_probs=189.5
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhh--CCCCHH---HHHHHHhcCCCcccchhh
Q 000323 1028 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKH--NEGSYA---LWLMYINSRTPLNHRLDA 1102 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVel--nP~NY~---LwlmYInsr~slddrl~~ 1102 (1669)
.|+++.|..+|....+ .+...|..++..|.+.+..+++.++|+...+. .|+.+. +...|.+.+ .
T Consensus 336 ~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g--------~ 404 (857)
T PLN03077 336 LGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLG--------D 404 (857)
T ss_pred cCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccc--------h
Confidence 4667888888887543 35677888888888888888888888866443 366555 444556666 6
Q ss_pred HHHHHHHHHHhhhcC-CCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHH-HHHHhhccC
Q 000323 1103 YDAALSVLCRCASAS-DGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLS-DILTCLTIS 1180 (1669)
Q Consensus 1103 YdkAI~aLe~las~~-~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLs-Ki~~YLt~s 1180 (1669)
+++|.++++.+.+.. .++ ..++-.|++.|+..|++++|++.++++.. .+ ..+.. -|..|.
T Consensus 405 ~~~a~~l~~~~~~~g~~~~--------~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~d--~vs~~~mi~~~~--- 466 (857)
T PLN03077 405 LDVGVKLHELAERKGLISY--------VVVANALIEMYSKCKCIDKALEVFHNIPE-----KD--VISWTSIIAGLR--- 466 (857)
T ss_pred HHHHHHHHHHHHHhCCCcc--------hHHHHHHHHHHHHcCCHHHHHHHHHhCCC-----CC--eeeHHHHHHHHH---
Confidence 788888888777653 233 56788899999999999999997776653 11 11211 222222
Q ss_pred CcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccch-hhHHHHHHHHHHHHHHHhhhcCCcchhhhh-----
Q 000323 1181 DKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLED-DEKQRAIKLIEMAVNSVELYSNGESLEKET----- 1254 (1669)
Q Consensus 1181 DR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk-~EPdnalAL~smA~dYY~~~~ndesla~~~----- 1254 (1669)
++|...||+.+ +.+.++ ..|+......- +..|.. .++-+...+.
T Consensus 467 ------------------------~~g~~~eA~~l---f~~m~~~~~pd~~t~~~l--L~a~~~-~g~l~~~~~i~~~~~ 516 (857)
T PLN03077 467 ------------------------LNNRCFEALIF---FRQMLLTLKPNSVTLIAA--LSACAR-IGALMCGKEIHAHVL 516 (857)
T ss_pred ------------------------HCCCHHHHHHH---HHHHHhCCCCCHhHHHHH--HHHHhh-hchHHHhHHHHHHHH
Confidence 33333333333 222211 12332222211 222322 2222221111
Q ss_pred --hhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhhcccCCccHHHHHHHHH--hCCCCCch
Q 000323 1255 --NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALI--KWPKGVPG 1329 (1669)
Q Consensus 1255 --~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~--~~PkNa~g 1329 (1669)
....+..+.-.+|..|...++.+.|..+|+.. .|+-+.. .|..+|....+ .++|+.+|++... ..|+...
T Consensus 517 ~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~-~~~A~~lf~~M~~~g~~Pd~~T- 591 (857)
T PLN03077 517 RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGK-GSMAVELFNRMVESGVNPDEVT- 591 (857)
T ss_pred HhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCccc-
Confidence 11111112223344444466777777777664 3333333 55556644443 6677777776665 3455544
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHH------------hhhhcc---cccccchhhhcccCCCCCCCCCCCCCccc
Q 000323 1330 IQCIWNQYVEYALQNGRHDFAAELMDRWFH------------SVWKVQ---YSQVEISDPLVADMSHSSPESTSTSDPEF 1394 (1669)
Q Consensus 1330 ~~caW~QLIq~al~~en~d~Ai~Lc~~ff~------------gia~~Q---~~~deALDaLrkgns~i~~es~s~~vSDf 1394 (1669)
++-+|...-+.|.++++.++...--. .+-..- .+.++|.+.+++- ++.++ ...
T Consensus 592 ----~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m--~~~pd------~~~ 659 (857)
T PLN03077 592 ----FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM--PITPD------PAV 659 (857)
T ss_pred ----HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC--CCCCC------HHH
Confidence 55556666666777776666655221 000000 0456666666532 11110 122
Q ss_pred ccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhh
Q 000323 1395 SVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISW 1466 (1669)
Q Consensus 1395 y~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~ 1466 (1669)
| -++|+-| .. +|+.+.|..+.++.++..|++.-..++.=-.|. .....++|+++..
T Consensus 660 ~----------~aLl~ac-~~--~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya---~~g~~~~a~~vr~ 715 (857)
T PLN03077 660 W----------GALLNAC-RI--HRHVELGELAAQHIFELDPNSVGYYILLCNLYA---DAGKWDEVARVRK 715 (857)
T ss_pred H----------HHHHHHH-HH--cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH---HCCChHHHHHHHH
Confidence 3 1455533 33 899999999999999999976333333222332 2344777777666
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.54 E-value=4.4e-06 Score=96.80 Aligned_cols=257 Identities=15% Similarity=0.108 Sum_probs=174.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH---------HHHHHHhcCCCcccchh
Q 000323 1031 MKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---------LWLMYINSRTPLNHRLD 1101 (1669)
Q Consensus 1031 ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~---------LwlmYInsr~slddrl~ 1101 (1669)
-|+|.++|...++.+|...++...|..+|.++|+...+..+-+.-+ ..|+-.. |+.=|...+
T Consensus 51 ~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~-~spdlT~~qr~lAl~qL~~Dym~aG-------- 121 (389)
T COG2956 51 PDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLL-ESPDLTFEQRLLALQQLGRDYMAAG-------- 121 (389)
T ss_pred cchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHh-cCCCCchHHHHHHHHHHHHHHHHhh--------
Confidence 3999999999999999999999999999999998777766655543 3433221 788888888
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHH-----HHh
Q 000323 1102 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDI-----LTC 1176 (1669)
Q Consensus 1102 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi-----~~Y 1176 (1669)
-||+|-++|..+..-- + .....+.+|+.+|.++.+++|||.+-.+|.. +.+. +-.+-++-| +.+
T Consensus 122 l~DRAE~~f~~L~de~--e------fa~~AlqqLl~IYQ~treW~KAId~A~~L~k--~~~q-~~~~eIAqfyCELAq~~ 190 (389)
T COG2956 122 LLDRAEDIFNQLVDEG--E------FAEGALQQLLNIYQATREWEKAIDVAERLVK--LGGQ-TYRVEIAQFYCELAQQA 190 (389)
T ss_pred hhhHHHHHHHHHhcch--h------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--cCCc-cchhHHHHHHHHHHHHH
Confidence 8999999998886632 2 1278899999999999999999998888886 4432 211111111 112
Q ss_pred hccCCcchh--hHHHHH-----HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcc
Q 000323 1177 LTISDKLIF--WVCCVY-----LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGES 1249 (1669)
Q Consensus 1177 Lt~sDR~~A--WL~~iY-----llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndes 1249 (1669)
+..+|-..| ||...+ -+|=.+++|++++..|....|... +..++.-||+.+--+..
T Consensus 191 ~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~---~e~v~eQn~~yl~evl~-------------- 253 (389)
T COG2956 191 LASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEA---LERVLEQNPEYLSEVLE-------------- 253 (389)
T ss_pred hhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHH---HHHHHHhChHHHHHHHH--------------
Confidence 222222222 555554 233456666666666666666555 44444444443333322
Q ss_pred hhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhcccCCccHHHHHHHHHhCCCCCch
Q 000323 1250 LEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPG 1329 (1669)
Q Consensus 1250 la~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g 1329 (1669)
.+.-||..+++.+..++.+.++|+..+...-+.+++.+++.+++++.|...+-+-|...|.=.
T Consensus 254 ---------------~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~-- 316 (389)
T COG2956 254 ---------------MLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR-- 316 (389)
T ss_pred ---------------HHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH--
Confidence 235566667788888888888888888776666667777777778888887788888888643
Q ss_pred HHHHHHHHHHHHHHc
Q 000323 1330 IQCIWNQYVEYALQN 1344 (1669)
Q Consensus 1330 ~~caW~QLIq~al~~ 1344 (1669)
.+..|+++.+..
T Consensus 317 ---gf~rl~~~~l~d 328 (389)
T COG2956 317 ---GFHRLMDYHLAD 328 (389)
T ss_pred ---HHHHHHHhhhcc
Confidence 355666665543
No 51
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.54 E-value=3.1e-05 Score=98.17 Aligned_cols=374 Identities=14% Similarity=0.093 Sum_probs=216.3
Q ss_pred chHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH--
Q 000323 1008 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPT-SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-- 1084 (1669)
Q Consensus 1008 ~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPt-SaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-- 1084 (1669)
.++++.+..|..+++- |+|..|+.+|..++...+. ++.+|+.++.+|+..+..++|.++|+++|.++|+++.
T Consensus 412 d~~dL~~d~a~al~~~-----~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~R 486 (895)
T KOG2076|consen 412 DDVDLYLDLADALTNI-----GKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDAR 486 (895)
T ss_pred hhHHHHHHHHHHHHhc-----ccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhh
Confidence 3447788888877776 5689999999999887775 5789999999999999999999999999999999999
Q ss_pred --HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCC----cchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhccc
Q 000323 1085 --LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD----EMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIP 1158 (1669)
Q Consensus 1085 --LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~D----r~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~ 1158 (1669)
|+.+|..++ .-++|+++|+++. + +| ..++.-...-++.-++++|.+.|+.++-|.+..-|...
T Consensus 487 i~Lasl~~~~g--------~~EkalEtL~~~~--~-~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~ 555 (895)
T KOG2076|consen 487 ITLASLYQQLG--------NHEKALETLEQII--N-PDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDD 555 (895)
T ss_pred hhHHHHHHhcC--------CHHHHHHHHhccc--C-CCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 999999999 8899999999876 2 44 22233344556788999999999999888765444320
Q ss_pred c------------------cC---CCCcccchHHHHHHhhccCCcchh--hHHHH--H-HHHhhccc-hHH---------
Q 000323 1159 A------------------TG---SNDRHSLFLSDILTCLTISDKLIF--WVCCV--Y-LVIYRKLP-DAV--------- 1202 (1669)
Q Consensus 1159 A------------------l~---g~sE~~lSLsKi~~YLt~sDR~~A--WL~~i--Y-llrYrvLP-Gd~--------- 1202 (1669)
- +. +-.. ++.-..++.-...+|.-.+ -++.- . -...+.|. .+|
T Consensus 556 ~~~~~~~f~~~~k~r~~~~~~~~~~~~~-~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~ 634 (895)
T KOG2076|consen 556 FLKKRYIFPRNKKKRRRAIAGTTSKRYS-ELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELIL 634 (895)
T ss_pred HHHHHHhcchHHHHHHHhhccccccccc-hhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHH
Confidence 0 00 0000 1111112222222221111 00000 0 00001110 111
Q ss_pred -HhhhhhhhhhhccCCCC--cccchhhHHH--HHHHHHHHHHHHhhhcCCcchhhhh----------hhchhhHhHHH-H
Q 000323 1203 -LQLLECEKELFAIDWPP--VQLEDDEKQR--AIKLIEMAVNSVELYSNGESLEKET----------NLRSAHCFAVN-H 1266 (1669)
Q Consensus 1203 -y~q~e~~KEAf~I~W~y--~~vlk~EPdn--alAL~smA~dYY~~~~ndesla~~~----------~~kt~~~fKLN-~ 1266 (1669)
+...++..||+.|---- ..+.-.+++. -+.-+.++..+|.. +...+-+- +.++-+.+--| .
T Consensus 635 ~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~---d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~ 711 (895)
T KOG2076|consen 635 SLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYAR---DPGDAFSYLRSVITQFQFYLDVYQLNLWNLD 711 (895)
T ss_pred HHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 12223344443320000 0000001110 01111111112211 11110000 11222222223 2
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCc-hhH-HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHc
Q 000323 1267 IWCMAVLNGLECSMNLLEKYIKLYPSC-LEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQN 1344 (1669)
Q Consensus 1267 IR~lI~LEDse~A~~LfdklLk~~P~d-~eL-~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~ 1344 (1669)
+..+....+-.+-..++.+++..+|.+ .-+ .+++-++.....-..|+..|-+|+..+|+++-.-.|+=..+|.++++.
T Consensus 712 ~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr 791 (895)
T KOG2076|consen 712 FSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQR 791 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence 333333445566777888888888888 455 777777666654567888999999999999997777766677777655
Q ss_pred CChHHHHHHHHH---HHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCH
Q 000323 1345 GRHDFAAELMDR---WFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDW 1421 (1669)
Q Consensus 1345 en~d~Ai~Lc~~---ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~ 1421 (1669)
.+..+ -++||+..+. +.+ +|.+ ..+|+ .|==||-+||+ -|-.
T Consensus 792 -------~v~~Rh~~i~qG~afL~R-Y~~----lR~~-------------------~~~QE--a~YNigRayh~--~gl~ 836 (895)
T KOG2076|consen 792 -------RVSNRHAQIAQGFAFLKR-YKE----LRRC-------------------EEKQE--AFYNIGRAYHQ--IGLV 836 (895)
T ss_pred -------HHhhhHHHHHHHHHHHHH-HHH----hhcc-------------------HHHHH--HHHHHHHHHHH--cccH
Confidence 22333 3556665432 111 1100 01122 22346779999 9999
Q ss_pred HHHHHHHHHHHhhcc
Q 000323 1422 NEARLAIDAALKAAA 1436 (1669)
Q Consensus 1422 ~EAfaAYDKALkanp 1436 (1669)
.=|..-|+|+|...|
T Consensus 837 ~LA~~YYekvL~~~p 851 (895)
T KOG2076|consen 837 HLAVSYYEKVLEVSP 851 (895)
T ss_pred HHHHHHHHHHhCCCc
Confidence 999999999999875
No 52
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.53 E-value=3.1e-06 Score=109.79 Aligned_cols=241 Identities=17% Similarity=0.242 Sum_probs=171.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhh-CCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHH
Q 000323 1037 LLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKH-NEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLC 1111 (1669)
Q Consensus 1037 LLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVel-nP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe 1111 (1669)
=|.|-+..+|+++.+|..|..++.+..+-+++++.+++|+.- |+.-.. +|--|+|.+..++.. +.-..++|
T Consensus 1446 DferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~e----esl~kVFe 1521 (1710)
T KOG1070|consen 1446 DFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTE----ESLKKVFE 1521 (1710)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcH----HHHHHHHH
Confidence 378889999999999999999999999999999999999853 443333 999999999655521 34455666
Q ss_pred HhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHH
Q 000323 1112 RCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY 1191 (1669)
Q Consensus 1112 ~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iY 1191 (1669)
++..-. |- .=+++.|..+|..++.++.|.+.++.++. || ++.+..|+.+.-
T Consensus 1522 RAcqyc--d~-------~~V~~~L~~iy~k~ek~~~A~ell~~m~K--------------KF------~q~~~vW~~y~~ 1572 (1710)
T KOG1070|consen 1522 RACQYC--DA-------YTVHLKLLGIYEKSEKNDEADELLRLMLK--------------KF------GQTRKVWIMYAD 1572 (1710)
T ss_pred HHHHhc--ch-------HHHHHHHHHHHHHhhcchhHHHHHHHHHH--------------Hh------cchhhHHHHHHH
Confidence 665544 33 67999999999999999999997777663 12 356677876543
Q ss_pred HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHH----HHH
Q 000323 1192 LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAV----NHI 1267 (1669)
Q Consensus 1192 llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKL----N~I 1267 (1669)
+++..+..++|-. ++. ++..++|- ..|
T Consensus 1573 ----------fLl~~ne~~aa~~------------------lL~---------------------rAL~~lPk~eHv~~I 1603 (1710)
T KOG1070|consen 1573 ----------FLLRQNEAEAARE------------------LLK---------------------RALKSLPKQEHVEFI 1603 (1710)
T ss_pred ----------HHhcccHHHHHHH------------------HHH---------------------HHHhhcchhhhHHHH
Confidence 2233322222222 222 23333333 235
Q ss_pred HHHHH----hcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhccc-CCccHHHHHHHHHh--CCCCCchHHHHHHHHHHH
Q 000323 1268 WCMAV----LNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDF-GDLSSVGFEEALIK--WPKGVPGIQCIWNQYVEY 1340 (1669)
Q Consensus 1268 R~lI~----LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m-~~~A~svle~AL~~--~PkNa~g~~caW~QLIq~ 1340 (1669)
+.++. .+|.+.++.||.-+|..||.=.+||++...|+.+.+ ....+.+|++|+.+ -|+...-.-..| ++|
T Consensus 1604 skfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw---Ley 1680 (1710)
T KOG1070|consen 1604 SKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW---LEY 1680 (1710)
T ss_pred HHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH---HHH
Confidence 55544 459999999999999999999999999999999975 55777999999875 466666444455 666
Q ss_pred HHHc---CChHHHHHHHHHHHHhhh
Q 000323 1341 ALQN---GRHDFAAELMDRWFHSVW 1362 (1669)
Q Consensus 1341 al~~---en~d~Ai~Lc~~ff~gia 1362 (1669)
+-.. ++.+.++.=+.+|..++.
T Consensus 1681 Ek~~Gde~~vE~VKarA~EYv~s~~ 1705 (1710)
T KOG1070|consen 1681 EKSHGDEKNVEYVKARAKEYVESIK 1705 (1710)
T ss_pred HHhcCchhhHHHHHHHHHHHHHHhh
Confidence 6654 455555555666777654
No 53
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.50 E-value=1.3e-06 Score=95.01 Aligned_cols=122 Identities=9% Similarity=0.081 Sum_probs=103.2
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHH
Q 000323 1027 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAA 1106 (1669)
Q Consensus 1027 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkA 1106 (1669)
..+.++.+...|.++|+.+|+++++|+.++.+|...+....+.+.|++|++++|++-.++..|..--..-.++. .+++|
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~-~~~~A 129 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQH-MTPQT 129 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCC-CcHHH
Confidence 45777999999999999999999999999999999999999999999999999999985554443210001111 36999
Q ss_pred HHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1107 LSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1107 I~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
+.+|.+..+.. |+. .++++.+...+.+.|+|++||..+.++..
T Consensus 130 ~~~l~~al~~d-P~~-------~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 130 REMIDKALALD-ANE-------VTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhC-CCC-------hhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999998 555 89999999999999999999999999876
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.49 E-value=3.2e-06 Score=86.56 Aligned_cols=133 Identities=14% Similarity=0.151 Sum_probs=111.8
Q ss_pred hhccchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCC--C
Q 000323 1004 KQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNE--G 1081 (1669)
Q Consensus 1004 e~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP--~ 1081 (1669)
+..+.+...|..+|..+...+ +++.|...|.++++.+|.+..+|+.++.+|...+...++..+|++|++..+ .
T Consensus 59 ~~~p~~~~~~~~la~~~~~~~-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 133 (234)
T TIGR02521 59 EHDPDDYLAYLALALYYQQLG-----ELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQ 133 (234)
T ss_pred HhCcccHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc
Confidence 344566688888888777764 569999999999999999999999999999999999999999999998642 2
Q ss_pred CHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1082 SYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1082 NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
... ++..|...+ .+++|+..|.+..... ++. .+.++.+..+|...|++++|+..+.+...
T Consensus 134 ~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~-~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 197 (234)
T TIGR02521 134 PARSLENAGLCALKAG--------DFDKAEKYLTRALQID-PQR-------PESLLELAELYYLRGQYKDARAYLERYQQ 197 (234)
T ss_pred chHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhC-cCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222 667777777 8899999999988887 454 67899999999999999999998887765
No 55
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.49 E-value=1.7e-05 Score=93.97 Aligned_cols=250 Identities=14% Similarity=0.027 Sum_probs=157.3
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhh
Q 000323 1028 LEGMKKALSLLSRALEADPTSEILW-ITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDA 1102 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSaeaW-y~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~ 1102 (1669)
.|+++.|...|.++.+.+|++..+. ...+.++...++.+.+.+.++++++.+|+|-+ +..+|+..+ .
T Consensus 131 ~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~g--------d 202 (398)
T PRK10747 131 RGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTG--------A 202 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH--------h
Confidence 3668999999999999999996443 44488999999999999999999999999986 888999998 9
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCc
Q 000323 1103 YDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDK 1182 (1669)
Q Consensus 1103 YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR 1182 (1669)
+++|+.+|..+.+...-+..+....-...++.++.......+-+...+.+..+-. ..+
T Consensus 203 w~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~----------------------~~~ 260 (398)
T PRK10747 203 WSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSR----------------------KTR 260 (398)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCH----------------------HHh
Confidence 9999999999887652221000000012223333332223222222222222110 001
Q ss_pred chhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHh
Q 000323 1183 LIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCF 1262 (1669)
Q Consensus 1183 ~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~f 1262 (1669)
....+... .+..+...|...+|.. ++..+.+ . ..+.
T Consensus 261 ~~~~~~~~--------~A~~l~~~g~~~~A~~------------------~L~~~l~---~---------------~~~~ 296 (398)
T PRK10747 261 HQVALQVA--------MAEHLIECDDHDTAQQ------------------IILDGLK---R---------------QYDE 296 (398)
T ss_pred CCHHHHHH--------HHHHHHHCCCHHHHHH------------------HHHHHHh---c---------------CCCH
Confidence 01111111 2223333344444433 3333211 0 0001
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhcc-cCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Q 000323 1263 AVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHD-FGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYA 1341 (1669)
Q Consensus 1263 KLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~-m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~a 1341 (1669)
.+-.+.-.+..++.+.++..+++.++.+|.++++.+..+++..+. .-.+|+..|+.++...|++.. +.-|.+..
T Consensus 297 ~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-----~~~La~~~ 371 (398)
T PRK10747 297 RLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-----YAWLADAL 371 (398)
T ss_pred HHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-----HHHHHHHH
Confidence 111111112346899999999999999999999965555554443 377999999999999999866 33477788
Q ss_pred HHcCChHHHHHHHHH
Q 000323 1342 LQNGRHDFAAELMDR 1356 (1669)
Q Consensus 1342 l~~en~d~Ai~Lc~~ 1356 (1669)
.+.|+.++|.++-++
T Consensus 372 ~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 372 DRLHKPEEAAAMRRD 386 (398)
T ss_pred HHcCCHHHHHHHHHH
Confidence 889999999777665
No 56
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.47 E-value=9e-07 Score=108.98 Aligned_cols=216 Identities=17% Similarity=0.154 Sum_probs=164.8
Q ss_pred HHHHHHHH-HHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCC-CHH---HHHHHHhcCCCcccchhhHHHHH
Q 000323 1033 KALSLLSR-ALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG-SYA---LWLMYINSRTPLNHRLDAYDAAL 1107 (1669)
Q Consensus 1033 AALdLLsr-ALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~-NY~---LwlmYInsr~slddrl~~YdkAI 1107 (1669)
-+|.+|++ .++.+|++|+.|+.++.+|+-+++-+.+..+|++||+++|+ .|. ++-=++-.+ .||+|.
T Consensus 404 v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~e--------e~d~a~ 475 (638)
T KOG1126|consen 404 VALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATE--------EFDKAM 475 (638)
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhH--------HHHhHH
Confidence 34555554 35789999999999999999999888999999999999983 222 334455555 899999
Q ss_pred HHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhH
Q 000323 1108 SVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWV 1187 (1669)
Q Consensus 1108 ~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL 1187 (1669)
..|-.+.... +.- --.|+=|--.|..+++++.|.- -++.|++ .|| +..+=+
T Consensus 476 ~~fr~Al~~~-~rh-------YnAwYGlG~vy~Kqek~e~Ae~----~fqkA~~-INP----------------~nsvi~ 526 (638)
T KOG1126|consen 476 KSFRKALGVD-PRH-------YNAWYGLGTVYLKQEKLEFAEF----HFQKAVE-INP----------------SNSVIL 526 (638)
T ss_pred HHHHhhhcCC-chh-------hHHHHhhhhheeccchhhHHHH----HHHhhhc-CCc----------------cchhHH
Confidence 9997777776 454 6688899999999999999987 3444444 466 122334
Q ss_pred HHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHH
Q 000323 1188 CCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHI 1267 (1669)
Q Consensus 1188 ~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~I 1267 (1669)
|| .|.++.+.+..++|+.+ +.++...||.+.+..|.+|
T Consensus 527 ~~---------~g~~~~~~k~~d~AL~~---~~~A~~ld~kn~l~~~~~~------------------------------ 564 (638)
T KOG1126|consen 527 CH---------IGRIQHQLKRKDKALQL---YEKAIHLDPKNPLCKYHRA------------------------------ 564 (638)
T ss_pred hh---------hhHHHHHhhhhhHHHHH---HHHHHhcCCCCchhHHHHH------------------------------
Confidence 44 35567777888888888 7777777777777777653
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCchhH-HHHH-HHHhhcccCCccHHHHHHHHHhCCCCCc
Q 000323 1268 WCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMK-ARLQKHDFGDLSSVGFEEALIKWPKGVP 1328 (1669)
Q Consensus 1268 R~lI~LEDse~A~~LfdklLk~~P~d~eL-~L~A-AyL~~K~m~~~A~svle~AL~~~PkNa~ 1328 (1669)
+.+..+++-++|+..++.+-+..|++.-+ .|.+ .|-++. +...|+.-|--|+..+|+-..
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~-~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLG-NTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHc-cchHHHHhhHHHhcCCCccch
Confidence 45556779999999999999999999999 4433 343444 488999999999999999887
No 57
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.44 E-value=0.00022 Score=88.36 Aligned_cols=136 Identities=17% Similarity=0.228 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHH
Q 000323 1011 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPT--SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLM 1088 (1669)
Q Consensus 1011 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPt--SaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~Lwlm 1088 (1669)
.+||.+....+.|.. ...-...|.+||..-|= -.-+|-.|+.+-...+-++-...-|++=++++|....=..-
T Consensus 103 RIwl~Ylq~l~~Q~~-----iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie 177 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGL-----ITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIE 177 (835)
T ss_pred HHHHHHHHHHHhcch-----HHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 789999988888864 34555666666666664 34567777777766666666667777777777766554444
Q ss_pred HHhcCCCcccchhhHHHH-----------------HHHHHHhhhcCCCCcch--------------hhhhhHHHHHHHHH
Q 000323 1089 YINSRTPLNHRLDAYDAA-----------------LSVLCRCASASDGDEMH--------------ASACILDLFLQMLQ 1137 (1669)
Q Consensus 1089 YInsr~slddrl~~YdkA-----------------I~aLe~las~~~~Dr~~--------------~Sa~iLDILL~Lvq 1137 (1669)
|+.....+++....|..- -..||++.+++ |++.+ -+-++.=+|..|++
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~-p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQN-PDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLAD 256 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhC-cchhcccCHHHHHHhhcccCcHHHHHHHHHHHH
Confidence 444432222221111111 11234444544 33211 12245667888999
Q ss_pred HHHHhcCHHHHHHHH
Q 000323 1138 CFCMSGNTEKAIQRI 1152 (1669)
Q Consensus 1138 LY~qSGnydKAI~tl 1152 (1669)
-|..+|.++||..++
T Consensus 257 YYIr~g~~ekarDvy 271 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVY 271 (835)
T ss_pred HHHHhhhhHHHHHHH
Confidence 999999999998855
No 58
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.43 E-value=2.5e-05 Score=87.65 Aligned_cols=203 Identities=15% Similarity=0.126 Sum_probs=146.1
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HH
Q 000323 1011 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LW 1086 (1669)
Q Consensus 1011 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----Lw 1086 (1669)
.+-|.+|+.||.+. ++.+|..-|..||++||++.-+|..++.+|...|..+.++++|++|+.++|+|=. .+
T Consensus 36 ~arlqLal~YL~~g-----d~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG 110 (250)
T COG3063 36 KARLQLALGYLQQG-----DYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHHCC-----CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhh
Confidence 77899999999995 4699999999999999999999999999999999999999999999999999877 33
Q ss_pred HHHHhcCCCcccchhhHHHHHHHHHHhhhcC-CCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCc
Q 000323 1087 LMYINSRTPLNHRLDAYDAALSVLCRCASAS-DGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDR 1165 (1669)
Q Consensus 1087 lmYInsr~slddrl~~YdkAI~aLe~las~~-~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE 1165 (1669)
++.=.++ .|++|...|+++...- =+.. -|.|.-+.-|-.+.|..++|-..+.|=+. ++-..+
T Consensus 111 ~FLC~qg--------~~~eA~q~F~~Al~~P~Y~~~-------s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~ 173 (250)
T COG3063 111 AFLCAQG--------RPEEAMQQFERALADPAYGEP-------SDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFP 173 (250)
T ss_pred HHHHhCC--------ChHHHHHHHHHHHhCCCCCCc-------chhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCC
Confidence 3333344 5899999998776641 1233 78899999999999999999986665554 222222
Q ss_pred ccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhc
Q 000323 1166 HSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYS 1245 (1669)
Q Consensus 1166 ~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ 1245 (1669)
...++..+.+...+|. -.|...+ +-|.+ +
T Consensus 174 -~~~l~~a~~~~~~~~y---------------------------------------------~~Ar~~~----~~~~~-~ 202 (250)
T COG3063 174 -PALLELARLHYKAGDY---------------------------------------------APARLYL----ERYQQ-R 202 (250)
T ss_pred -hHHHHHHHHHHhcccc---------------------------------------------hHHHHHH----HHHHh-c
Confidence 2222222222222222 1122222 22332 2
Q ss_pred CCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH
Q 000323 1246 NGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL 1296 (1669)
Q Consensus 1246 ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL 1296 (1669)
+ .-.+..++|- ||+-..+||...+-..=.++.+..|...++
T Consensus 203 ~---------~~~A~sL~L~-iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 203 G---------GAQAESLLLG-IRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred c---------cccHHHHHHH-HHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 2 1333556665 776566889999999999999999999887
No 59
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.42 E-value=6.4e-05 Score=93.04 Aligned_cols=113 Identities=16% Similarity=0.157 Sum_probs=103.2
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHH
Q 000323 1029 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1104 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~Yd 1104 (1669)
++|.+.|.+.+..|+-+|.-.+-.-..+.....++...++.++...|+..++.++. ++++|-..+ .|+
T Consensus 21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK--------~Y~ 92 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK--------KYD 92 (700)
T ss_pred HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh--------hHH
Confidence 56899999999999999999999999999989999999999999999999999998 556677777 999
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1105 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1105 kAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
+||..|-++..-. +|+ +.||--+.-|-.|-|+|+-...+-+++++
T Consensus 93 eaiKcy~nAl~~~-~dN-------~qilrDlslLQ~QmRd~~~~~~tr~~LLq 137 (700)
T KOG1156|consen 93 EAIKCYRNALKIE-KDN-------LQILRDLSLLQIQMRDYEGYLETRNQLLQ 137 (700)
T ss_pred HHHHHHHHHHhcC-CCc-------HHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 9999998887776 888 99999999999999999999999999997
No 60
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.39 E-value=2.2e-05 Score=91.18 Aligned_cols=259 Identities=17% Similarity=0.134 Sum_probs=177.5
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHH
Q 000323 1069 DDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKA 1148 (1669)
Q Consensus 1069 ~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKA 1148 (1669)
++--..|-++. ..|.-.+.|+=++ .=|+|+..|-+++... +.- .|.-|.|-.||..-|.+|.|
T Consensus 26 q~~~~qa~~ls-r~Yv~GlNfLLs~--------Q~dKAvdlF~e~l~~d-~~t-------~e~~ltLGnLfRsRGEvDRA 88 (389)
T COG2956 26 QDKQDQANRLS-RDYVKGLNFLLSN--------QPDKAVDLFLEMLQED-PET-------FEAHLTLGNLFRSRGEVDRA 88 (389)
T ss_pred hhHHHHHhhcc-HHHHhHHHHHhhc--------CcchHHHHHHHHHhcC-chh-------hHHHHHHHHHHHhcchHHHH
Confidence 34444554454 7888776676665 4599999999998876 555 89999999999999999999
Q ss_pred HHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHH
Q 000323 1149 IQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQ 1228 (1669)
Q Consensus 1149 I~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPd 1228 (1669)
|. |-|+-.+ +| +++ .. +
T Consensus 89 IR----iHQ~L~~--sp-dlT---------~~-----------------------------------------------q 105 (389)
T COG2956 89 IR----IHQTLLE--SP-DLT---------FE-----------------------------------------------Q 105 (389)
T ss_pred HH----HHHHHhc--CC-CCc---------hH-----------------------------------------------H
Confidence 99 4443333 44 222 11 2
Q ss_pred HHHHHHHHHHHHHhhhcCCcchhhhh-h-hchhhHhHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCchhH------
Q 000323 1229 RAIKLIEMAVNSVELYSNGESLEKET-N-LRSAHCFAVNHIWCMAV----LNGLECSMNLLEKYIKLYPSCLEL------ 1296 (1669)
Q Consensus 1229 nalAL~smA~dYY~~~~ndesla~~~-~-~kt~~~fKLN~IR~lI~----LEDse~A~~LfdklLk~~P~d~eL------ 1296 (1669)
.++|+.++|-||..+..- +-++.. . .--..+|..+-+|+++. -.++++|++...++++.-|+.-.+
T Consensus 106 r~lAl~qL~~Dym~aGl~--DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfy 183 (389)
T COG2956 106 RLLALQQLGRDYMAAGLL--DRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFY 183 (389)
T ss_pred HHHHHHHHHHHHHHhhhh--hHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHH
Confidence 233344444444432111 001111 0 11124566665666643 339999999999999999887555
Q ss_pred -HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhh
Q 000323 1297 -VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPL 1375 (1669)
Q Consensus 1297 -~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaL 1375 (1669)
.|.-+++...+ .+.|+..+.+|+..+|+.+. +=+++-..++.+|++..|++..+. ++
T Consensus 184 CELAq~~~~~~~-~d~A~~~l~kAlqa~~~cvR----Asi~lG~v~~~~g~y~~AV~~~e~-----------------v~ 241 (389)
T COG2956 184 CELAQQALASSD-VDRARELLKKALQADKKCVR----ASIILGRVELAKGDYQKAVEALER-----------------VL 241 (389)
T ss_pred HHHHHHHhhhhh-HHHHHHHHHHHHhhCcccee----hhhhhhHHHHhccchHHHHHHHHH-----------------HH
Confidence 34445555554 77899999999999999999 888999999999999999887755 11
Q ss_pred cccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCC
Q 000323 1376 VADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINE 1455 (1669)
Q Consensus 1376 rkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~ 1455 (1669)
+-|+++++++. ..|-.||++ .|+.+|...+.-+|...+++-..+.++ |=+.+..+|
T Consensus 242 ---------eQn~~yl~evl-----------~~L~~~Y~~--lg~~~~~~~fL~~~~~~~~g~~~~l~l--~~lie~~~G 297 (389)
T COG2956 242 ---------EQNPEYLSEVL-----------EMLYECYAQ--LGKPAEGLNFLRRAMETNTGADAELML--ADLIELQEG 297 (389)
T ss_pred ---------HhChHHHHHHH-----------HHHHHHHHH--hCCHHHHHHHHHHHHHccCCccHHHHH--HHHHHHhhC
Confidence 22444555555 677789999 999999999999999999987444443 444455555
No 61
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.36 E-value=2.1e-05 Score=97.41 Aligned_cols=291 Identities=15% Similarity=0.095 Sum_probs=214.6
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHHH
Q 000323 1029 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALS 1108 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~ 1108 (1669)
-+..+|+.+|.+.-++.++..=+...++..|..+..-.++...|+.+=+..|.--.=--+|--.-|++.+ +-++.
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~-----~v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD-----EVALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh-----hHHHH
Confidence 3459999999998899999997777889999999988889999999988886433322445555566666 44899
Q ss_pred HHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHH
Q 000323 1109 VLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVC 1188 (1669)
Q Consensus 1109 aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~ 1188 (1669)
+|++-.-..+++. -+.|-++-.||-.+++++.||..+.|=.| .+|+ .+
T Consensus 408 ~Laq~Li~~~~~s-------PesWca~GNcfSLQkdh~~Aik~f~RAiQ-----ldp~--------------------fa 455 (638)
T KOG1126|consen 408 YLAQDLIDTDPNS-------PESWCALGNCFSLQKDHDTAIKCFKRAIQ-----LDPR--------------------FA 455 (638)
T ss_pred HHHHHHHhhCCCC-------cHHHHHhcchhhhhhHHHHHHHHHHHhhc-----cCCc--------------------cc
Confidence 9988666666787 89999999999999999999995555444 3442 22
Q ss_pred HHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHH
Q 000323 1189 CVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIW 1268 (1669)
Q Consensus 1189 ~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR 1268 (1669)
|.| +|.|.=+-.++.-..|-.. |...+.-+|..=-|.+-+++-|++
T Consensus 456 Yay-----TLlGhE~~~~ee~d~a~~~---fr~Al~~~~rhYnAwYGlG~vy~K-------------------------- 501 (638)
T KOG1126|consen 456 YAY-----TLLGHESIATEEFDKAMKS---FRKALGVDPRHYNAWYGLGTVYLK-------------------------- 501 (638)
T ss_pred hhh-----hhcCChhhhhHHHHhHHHH---HHhhhcCCchhhHHHHhhhhheec--------------------------
Confidence 333 2334334444444455555 555666666666666555433333
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCchhHHHH-HHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCCh
Q 000323 1269 CMAVLNGLECSMNLLEKYIKLYPSCLELVLM-KARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRH 1347 (1669)
Q Consensus 1269 ~lI~LEDse~A~~LfdklLk~~P~d~eL~L~-AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~ 1347 (1669)
.|..+.|.--|.++++.+|.+..|+.+ +.-++..+-.++|+..|++|+.++|+|+- .+++-+......+++
T Consensus 502 ----qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l----~~~~~~~il~~~~~~ 573 (638)
T KOG1126|consen 502 ----QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL----CKYHRASILFSLGRY 573 (638)
T ss_pred ----cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch----hHHHHHHHHHhhcch
Confidence 345667777899999999999999444 44344444499999999999999999999 777888888888899
Q ss_pred HHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHH
Q 000323 1348 DFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLA 1427 (1669)
Q Consensus 1348 d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaA 1427 (1669)
++|...+++ |.++ .| |.=.+|.+||.++=+ .|+.+.|..-
T Consensus 574 ~eal~~LEe---------------Lk~~----vP-------------------~es~v~~llgki~k~--~~~~~~Al~~ 613 (638)
T KOG1126|consen 574 VEALQELEE---------------LKEL----VP-------------------QESSVFALLGKIYKR--LGNTDLALLH 613 (638)
T ss_pred HHHHHHHHH---------------HHHh----Cc-------------------chHHHHHHHHHHHHH--HccchHHHHh
Confidence 888888754 2222 11 222467999999999 9999999999
Q ss_pred HHHHHhhccCC
Q 000323 1428 IDAALKAAASE 1438 (1669)
Q Consensus 1428 YDKALkanp~N 1438 (1669)
|==|+..+|..
T Consensus 614 f~~A~~ldpkg 624 (638)
T KOG1126|consen 614 FSWALDLDPKG 624 (638)
T ss_pred hHHHhcCCCcc
Confidence 99999999954
No 62
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.34 E-value=9.5e-06 Score=94.47 Aligned_cols=308 Identities=17% Similarity=0.192 Sum_probs=203.6
Q ss_pred hhhccchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCC
Q 000323 1003 LKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1082 (1669)
Q Consensus 1003 le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~N 1082 (1669)
+|-.|...++...-|-.||.-..+ .+|+.=|.+.|+.-|+=..+-..-+.+..++|+-+.+.+-|.+-+.++|.+
T Consensus 65 ve~dp~~Y~aifrRaT~yLAmGks-----k~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~ 139 (504)
T KOG0624|consen 65 VEGDPNNYQAIFRRATVYLAMGKS-----KAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSN 139 (504)
T ss_pred HcCCchhHHHHHHHHHHHhhhcCC-----ccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCc
Confidence 444555667788888888877665 889999999999999999999999999999999999999999999999966
Q ss_pred HH-------------HHH------HHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhc
Q 000323 1083 YA-------------LWL------MYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSG 1143 (1669)
Q Consensus 1083 Y~-------------Lwl------mYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSG 1143 (1669)
-. -|. -|+..+ .|..||.++-.+.+-.+ |--.+..++.++|..-|
T Consensus 140 ~~~~eaqskl~~~~e~~~l~~ql~s~~~~G--------D~~~ai~~i~~llEi~~--------Wda~l~~~Rakc~i~~~ 203 (504)
T KOG0624|consen 140 GLVLEAQSKLALIQEHWVLVQQLKSASGSG--------DCQNAIEMITHLLEIQP--------WDASLRQARAKCYIAEG 203 (504)
T ss_pred chhHHHHHHHHhHHHHHHHHHHHHHHhcCC--------chhhHHHHHHHHHhcCc--------chhHHHHHHHHHHHhcC
Confidence 54 111 122333 67888888877766553 33678889999999999
Q ss_pred CHHHHHHHHHh---hcccc------------cCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhh
Q 000323 1144 NTEKAIQRISR---LLIPA------------TGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLEC 1208 (1669)
Q Consensus 1144 nydKAI~tl~r---LEq~A------------l~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~ 1208 (1669)
...+||.-+.. |-+.. .-|+ ...||..|+.||..... -++|+-|.-..+++ .-+.+-
T Consensus 204 e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd--~~~sL~~iRECLKldpd--HK~Cf~~YKklkKv----~K~les 275 (504)
T KOG0624|consen 204 EPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGD--AENSLKEIRECLKLDPD--HKLCFPFYKKLKKV----VKSLES 275 (504)
T ss_pred cHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhh--HHHHHHHHHHHHccCcc--hhhHHHHHHHHHHH----HHHHHH
Confidence 99999984432 22211 1122 24578888888888777 56676652222221 111111
Q ss_pred hhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHH----HHHHHHhcCHHHHHHHHH
Q 000323 1209 EKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNH----IWCMAVLNGLECSMNLLE 1284 (1669)
Q Consensus 1209 ~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~----IR~lI~LEDse~A~~Lfd 1284 (1669)
-+++.. +.+-.-.+ + +|+.-+..+ -......+|. -+|+-.-|.+-+|+.-|.
T Consensus 276 ~e~~ie-----------~~~~t~cl-e---------~ge~vlk~e---p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 276 AEQAIE-----------EKHWTECL-E---------AGEKVLKNE---PEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred HHHHHh-----------hhhHHHHH-H---------HHHHHHhcC---CcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 111111 00000000 1 111111110 0111111222 234333558899999999
Q ss_pred HHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH-----H
Q 000323 1285 KYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR-----W 1357 (1669)
Q Consensus 1285 klLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~-----f 1357 (1669)
.+|...|+|+++ -=+-+||-.- |-++|+.-|+.|++.+|+|.. + .++.+.|.+|-++ |
T Consensus 332 evL~~d~~dv~~l~dRAeA~l~dE-~YD~AI~dye~A~e~n~sn~~----~----------reGle~Akrlkkqs~kRDY 396 (504)
T KOG0624|consen 332 EVLDIDPDDVQVLCDRAEAYLGDE-MYDDAIHDYEKALELNESNTR----A----------REGLERAKRLKKQSGKRDY 396 (504)
T ss_pred HHHhcCchHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhcCcccHH----H----------HHHHHHHHHHHHHhccchH
Confidence 999999999999 5566676444 688999999999999999998 5 3467778887766 7
Q ss_pred HHhhhhccc-ccccchhhhccc
Q 000323 1358 FHSVWKVQY-SQVEISDPLVAD 1378 (1669)
Q Consensus 1358 f~gia~~Q~-~~deALDaLrkg 1378 (1669)
|+-+.--.. .+.+...++|+.
T Consensus 397 YKILGVkRnAsKqEI~KAYRKl 418 (504)
T KOG0624|consen 397 YKILGVKRNASKQEITKAYRKL 418 (504)
T ss_pred HHHhhhcccccHHHHHHHHHHH
Confidence 776655444 777888888765
No 63
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.33 E-value=8.7e-05 Score=93.21 Aligned_cols=343 Identities=16% Similarity=0.106 Sum_probs=201.7
Q ss_pred ccccccccchhh----hhhhhhccc----hHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Q 000323 988 RQSSFFRSRNGV----LNKLKQVEL----SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEAD--PTSEILWITYLL 1057 (1669)
Q Consensus 988 ~~~rYF~~~~d~----i~~le~~~~----d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEIN--PtSaeaWy~yl~ 1057 (1669)
+...||....+. ..++|+... ..+.|=.+|+-+..-+.+ -+|.++++.++..- |.+..++.+-+.
T Consensus 327 d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~-----s~Av~ll~~~~~~~~~ps~~s~~Lmask 401 (799)
T KOG4162|consen 327 DHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSD-----SKAVNLLRESLKKSEQPSDISVLLMASK 401 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccc-----hHHHHHHHhhcccccCCCcchHHHHHHH
Confidence 445566555555 337777663 339999999988877765 89999999999999 888888888877
Q ss_pred HHHhC-CCCchHHHHHHHHHhh--------CCCCHH-HHHHHHh---cCCCcccchhhHHHHHHHHHHhhhcCCCCcchh
Q 000323 1058 IFYSN-TNSVGKDDMFSYSVKH--------NEGSYA-LWLMYIN---SRTPLNHRLDAYDAALSVLCRCASASDGDEMHA 1124 (1669)
Q Consensus 1058 lY~~~-~~~eea~emlekAVel--------nP~NY~-LwlmYIn---sr~slddrl~~YdkAI~aLe~las~~~~Dr~~~ 1124 (1669)
+++.. +..+++.+|-.||+.+ .|..|- ++..|-. +....+.|+.--.++++.|++.+...+.|
T Consensus 402 lc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d---- 477 (799)
T KOG4162|consen 402 LCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD---- 477 (799)
T ss_pred HHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC----
Confidence 77754 4466788888888873 333333 3333322 23355566656688899998888776444
Q ss_pred hhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccC-CCCc---------------------------------ccchH
Q 000323 1125 SACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATG-SNDR---------------------------------HSLFL 1170 (1669)
Q Consensus 1125 Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~-g~sE---------------------------------~~lSL 1170 (1669)
.++++++.--|..+++++.|.+...+.+. +. |.+. +.+--
T Consensus 478 ----p~~if~lalq~A~~R~l~sAl~~~~eaL~--l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~ 551 (799)
T KOG4162|consen 478 ----PLVIFYLALQYAEQRQLTSALDYAREALA--LNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD 551 (799)
T ss_pred ----chHHHHHHHHHHHHHhHHHHHHHHHHHHH--hcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch
Confidence 56777777777777777777776655554 21 1111 12222
Q ss_pred HHHHHhhccCCcchhhHHHHHHHHh-hccchHH-Hhhhh---hhhhhhccCCCCcccchhhHHHHHHHH-----------
Q 000323 1171 SDILTCLTISDKLIFWVCCVYLVIY-RKLPDAV-LQLLE---CEKELFAIDWPPVQLEDDEKQRAIKLI----------- 1234 (1669)
Q Consensus 1171 sKi~~YLt~sDR~~AWL~~iYllrY-rvLPGd~-y~q~e---~~KEAf~I~W~y~~vlk~EPdnalAL~----------- 1234 (1669)
-|+.+=++.+|+|-+=--|+|.+.+ +..++-- -...| +.|.-+.+ ...-.++-+..-..+.
T Consensus 552 ~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~l---a~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 552 GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHL---ALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhccccc---CcccccccchhhHHHHHHHHhhhhhcc
Confidence 3444445566666665556663333 2111100 00011 01111111 0000111111111111
Q ss_pred -------------------------HHHHHHHhhhcCCcchhhhhhhchhhHhHHHH----H--HHHHHhcCHHHHHHHH
Q 000323 1235 -------------------------EMAVNSVELYSNGESLEKETNLRSAHCFAVNH----I--WCMAVLNGLECSMNLL 1283 (1669)
Q Consensus 1235 -------------------------smA~dYY~~~~ndesla~~~~~kt~~~fKLN~----I--R~lI~LEDse~A~~Lf 1283 (1669)
.+|++++..+-+++..-.- =.++..-.++.+ + +.+...+..++|.+.|
T Consensus 629 se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~C-L~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 629 SELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSC-LLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred cccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHH-HHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 2334444442332221000 001112223322 2 2223356899999999
Q ss_pred HHHHHhCCCchhH--HHHHHHHhhcccCCccH--HHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Q 000323 1284 EKYIKLYPSCLEL--VLMKARLQKHDFGDLSS--VGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELM 1354 (1669)
Q Consensus 1284 dklLk~~P~d~eL--~L~AAyL~~K~m~~~A~--svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc 1354 (1669)
..++...|.++.. .|...+++... +.-+. ..+..|+.++|.|.. +|++|.......|+.++|..-.
T Consensus 708 ~~Al~ldP~hv~s~~Ala~~lle~G~-~~la~~~~~L~dalr~dp~n~e----aW~~LG~v~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 708 LVALALDPDHVPSMTALAELLLELGS-PRLAEKRSLLSDALRLDPLNHE----AWYYLGEVFKKLGDSKQAAECF 777 (799)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCC-cchHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHccchHHHHHHH
Confidence 9999999999999 44444444443 44333 599999999999999 9999999999999999776533
No 64
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.33 E-value=6.4e-06 Score=81.43 Aligned_cols=106 Identities=13% Similarity=0.148 Sum_probs=94.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHH
Q 000323 1036 SLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLC 1111 (1669)
Q Consensus 1036 dLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe 1111 (1669)
.+|.++++.+|++..+.+.++..|...+...++.++|+++++.+|.+.. ++..|...+ .|+.|+.+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~--------~~~~A~~~~~ 75 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLK--------EYEEAIDAYA 75 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999998866 667777777 8999999999
Q ss_pred HhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1112 RCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1112 ~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
+..+.. ++. .++++.+..+|...|++++|+..+.+...
T Consensus 76 ~~~~~~-p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 76 LAAALD-PDD-------PRPYFHAAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHhcC-CCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888877 555 89999999999999999999998887776
No 65
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.25 E-value=8.5e-06 Score=88.67 Aligned_cols=107 Identities=13% Similarity=0.173 Sum_probs=94.1
Q ss_pred hhhhhccchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHhCCC--CchHHHHHHHHHh
Q 000323 1001 NKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLI-FYSNTN--SVGKDDMFSYSVK 1077 (1669)
Q Consensus 1001 ~~le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~l-Y~~~~~--~eea~emlekAVe 1077 (1669)
..|+..|.+.+.|+.++.-++..+ +++.|+..|.+|++++|+++.+|+.|+.. |...+. ..++.++|++|++
T Consensus 64 ~~L~~~P~~~~~w~~Lg~~~~~~g-----~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~ 138 (198)
T PRK10370 64 DKIRANPQNSEQWALLGEYYLWRN-----DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALA 138 (198)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 467778899999999999998775 46999999999999999999999999985 566665 4789999999999
Q ss_pred hCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCC
Q 000323 1078 HNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD 1120 (1669)
Q Consensus 1078 lnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~D 1120 (1669)
.+|++-. |+..|...+ .|++|+..|+++....+++
T Consensus 139 ~dP~~~~al~~LA~~~~~~g--------~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 139 LDANEVTALMLLASDAFMQA--------DYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred hCCCChhHHHHHHHHHHHcC--------CHHHHHHHHHHHHhhCCCC
Confidence 9999877 788888888 9999999999998887555
No 66
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.21 E-value=9.4e-06 Score=83.86 Aligned_cols=103 Identities=16% Similarity=0.149 Sum_probs=75.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHH
Q 000323 1036 SLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLC 1111 (1669)
Q Consensus 1036 dLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe 1111 (1669)
.+|.+||+++|++ |+.++..+.+.+.-.++.++|.+|+.++|.++. ++.++...+ .|++|+..|.
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g--------~~~~A~~~y~ 82 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLK--------EYTTAINFYG 82 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh--------hHHHHHHHHH
Confidence 5677888888775 556677777777777777888888888887777 555566666 7788888887
Q ss_pred HhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1112 RCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1112 ~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
+..+..| +. -+.++.+..++...|+++.||..+.+...
T Consensus 83 ~Al~l~p-~~-------~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 83 HALMLDA-SH-------PEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHhcCC-CC-------cHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777763 43 67788888888888888888887766554
No 67
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.19 E-value=3.7e-05 Score=83.24 Aligned_cols=145 Identities=13% Similarity=0.063 Sum_probs=108.7
Q ss_pred cchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCH
Q 000323 1007 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSE---ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY 1083 (1669)
Q Consensus 1007 ~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSa---eaWy~yl~lY~~~~~~eea~emlekAVelnP~NY 1083 (1669)
....+.++.+|..++..+ +++.|...|.++++.+|+++ .+|+.++.+|...++..++.+.|+++++..|++.
T Consensus 30 ~~~~~~~~~~g~~~~~~~-----~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 104 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSG-----DYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP 104 (235)
T ss_pred cCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 344588999998888764 46999999999999999987 6889999999999999999999999999999766
Q ss_pred H-------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhh--h--------hHHHHHHHHHHHHHhcCHH
Q 000323 1084 A-------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASA--C--------ILDLFLQMLQCFCMSGNTE 1146 (1669)
Q Consensus 1084 ~-------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa--~--------iLDILL~LvqLY~qSGnyd 1146 (1669)
. ++..|.+.........-.+++|++.|.+....+ |+....-. . +....+.+..+|...|+++
T Consensus 105 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~ 183 (235)
T TIGR03302 105 DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYV 183 (235)
T ss_pred chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChH
Confidence 4 344454441111112236899999999999988 44311100 0 1112346788999999999
Q ss_pred HHHHHHHhhcc
Q 000323 1147 KAIQRISRLLI 1157 (1669)
Q Consensus 1147 KAI~tl~rLEq 1157 (1669)
+|+..+.++..
T Consensus 184 ~A~~~~~~al~ 194 (235)
T TIGR03302 184 AAINRFETVVE 194 (235)
T ss_pred HHHHHHHHHHH
Confidence 99998877764
No 68
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.12 E-value=8e-05 Score=96.49 Aligned_cols=269 Identities=12% Similarity=0.055 Sum_probs=160.3
Q ss_pred hhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHH
Q 000323 1077 KHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRI 1152 (1669)
Q Consensus 1077 elnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl 1152 (1669)
-++|.|+. |..+|...+ .|++|+.+++.+.+.+ |+. +.+++++.-||.+.+++++|.-+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~--------~~deai~i~~~~l~~~-P~~-------i~~yy~~G~l~~q~~~~~~~~lv- 87 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSEN--------LTDEAKDICEEHLKEH-KKS-------ISALYISGILSLSRRPLNDSNLL- 87 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHhC-Ccc-------eehHHHHHHHHHhhcchhhhhhh-
Confidence 45666666 556676777 8899999998888888 677 88888888899999999999775
Q ss_pred HhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHH----H--HHHhhccchHHHhhhhhhhhhhccCCCCcccchhh
Q 000323 1153 SRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCV----Y--LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDE 1226 (1669)
Q Consensus 1153 ~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~i----Y--llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~E 1226 (1669)
++.. +-..+.+. .+.. ++|.. + .-.++. +|..|...|..++++.+ |.++++-+
T Consensus 88 -~~l~--~~~~~~~~----~~ve----------~~~~~i~~~~~~k~Al~~-LA~~Ydk~g~~~ka~~~---yer~L~~D 146 (906)
T PRK14720 88 -NLID--SFSQNLKW----AIVE----------HICDKILLYGENKLALRT-LAEAYAKLNENKKLKGV---WERLVKAD 146 (906)
T ss_pred -hhhh--hcccccch----hHHH----------HHHHHHHhhhhhhHHHHH-HHHHHHHcCChHHHHHH---HHHHHhcC
Confidence 4443 11111100 1111 22211 1 112333 68889999999999999 99999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhc
Q 000323 1227 KQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKH 1306 (1669)
Q Consensus 1227 PdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K 1306 (1669)
|+|+.+|=.+| .+|+. . +.++|+.++.++++. |+..+
T Consensus 147 ~~n~~aLNn~A-Y~~ae-----------------------------~-dL~KA~~m~~KAV~~------------~i~~k 183 (906)
T PRK14720 147 RDNPEIVKKLA-TSYEE-----------------------------E-DKEKAITYLKKAIYR------------FIKKK 183 (906)
T ss_pred cccHHHHHHHH-HHHHH-----------------------------h-hHHHHHHHHHHHHHH------------HHhhh
Confidence 99999998875 34432 0 345555566665554 44444
Q ss_pred ccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCC
Q 000323 1307 DFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPES 1386 (1669)
Q Consensus 1307 ~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es 1386 (1669)
+ ..+...+|++.+..+|++.. .+.++++.....-....+..++.+-|..+.. ....++++++|+.....-+
T Consensus 184 q-~~~~~e~W~k~~~~~~~d~d----~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~-~~~~~~~i~iLK~iL~~~~--- 254 (906)
T PRK14720 184 Q-YVGIEEIWSKLVHYNSDDFD----FFLRIERKVLGHREFTRLVGLLEDLYEPYKA-LEDWDEVIYILKKILEHDN--- 254 (906)
T ss_pred c-chHHHHHHHHHHhcCcccch----HHHHHHHHHHhhhccchhHHHHHHHHHHHhh-hhhhhHHHHHHHHHHhcCC---
Confidence 3 44555666666666666666 5555555555554455555555442222111 1144556666665433311
Q ss_pred CCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhcc----CCcHHHHHHHHHHHHhcC
Q 000323 1387 TSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAA----SEHFKHCVREHAMLLLIN 1454 (1669)
Q Consensus 1387 ~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp----~N~~i~cLNNYAYFLS~e 1454 (1669)
.+++ +.-+++.+. .+++.. ..-|+.+|+... ...|..|+.+|--++++.
T Consensus 255 -----~n~~-----------a~~~l~~~y--~~kY~~-~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i~f~ 307 (906)
T PRK14720 255 -----KNNK-----------AREELIRFY--KEKYKD-HSLLEDYLKMSDIGNNRKPVKDCIADFEKNIVFD 307 (906)
T ss_pred -----cchh-----------hHHHHHHHH--HHHccC-cchHHHHHHHhccccCCccHHHHHHHHHHHeeec
Confidence 2334 444554444 444444 556666665433 123566777766666553
No 69
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.06 E-value=5.1e-05 Score=82.13 Aligned_cols=128 Identities=14% Similarity=0.159 Sum_probs=105.8
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHhC--------CCCchHHHHHHHHHhhC
Q 000323 1011 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEI---LWITYLLIFYSN--------TNSVGKDDMFSYSVKHN 1079 (1669)
Q Consensus 1011 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSae---aWy~yl~lY~~~--------~~~eea~emlekAVeln 1079 (1669)
+.|+.+|.-++.. ++++.|+..|.++++.+|+++. +|+.++.+|+.. +....+.+.|+++++..
T Consensus 71 ~a~~~la~~~~~~-----~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 145 (235)
T TIGR03302 71 QAQLDLAYAYYKS-----GDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY 145 (235)
T ss_pred HHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC
Confidence 6788888877776 4579999999999999998887 688888888875 45667899999999999
Q ss_pred CCCHH---------------------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHH
Q 000323 1080 EGSYA---------------------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQC 1138 (1669)
Q Consensus 1080 P~NY~---------------------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqL 1138 (1669)
|++-. ++.+|++.+ .|.+|+..|.+....+ |+ +....+.++.+..+
T Consensus 146 p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g--------~~~~A~~~~~~al~~~-p~----~~~~~~a~~~l~~~ 212 (235)
T TIGR03302 146 PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRG--------AYVAAINRFETVVENY-PD----TPATEEALARLVEA 212 (235)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHHC-CC----CcchHHHHHHHHHH
Confidence 99843 345667777 8999999999998887 33 12347899999999
Q ss_pred HHHhcCHHHHHHHHHhhc
Q 000323 1139 FCMSGNTEKAIQRISRLL 1156 (1669)
Q Consensus 1139 Y~qSGnydKAI~tl~rLE 1156 (1669)
|...|++++|+..+..|.
T Consensus 213 ~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 213 YLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 999999999999777665
No 70
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.03 E-value=0.00031 Score=90.11 Aligned_cols=124 Identities=17% Similarity=0.146 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HH
Q 000323 1011 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LW 1086 (1669)
Q Consensus 1011 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----Lw 1086 (1669)
..|+..-.-||+ .++.-.|..-|++||.++|.+-.+|.-+...|...|..+.+...|-||..++|.+.. .+
T Consensus 563 ~nW~~rG~yyLe-----a~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A 637 (1238)
T KOG1127|consen 563 ENWVQRGPYYLE-----AHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEA 637 (1238)
T ss_pred hhhhhccccccC-----ccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHH
Confidence 566663333333 355689999999999999999999999999999999999999999999999998766 34
Q ss_pred HHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhh--hHHHHHHHHHHHHHhcCHHHHHH
Q 000323 1087 LMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASAC--ILDLFLQMLQCFCMSGNTEKAIQ 1150 (1669)
Q Consensus 1087 lmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~--iLDILL~LvqLY~qSGnydKAI~ 1150 (1669)
-|--..+ .|.+|+.+|......+ .+ +++++ +-+.++.+...+..+|=+.||..
T Consensus 638 ~~ecd~G--------kYkeald~l~~ii~~~-s~--e~~~q~gLaE~~ir~akd~~~~gf~~kavd 692 (1238)
T KOG1127|consen 638 VMECDNG--------KYKEALDALGLIIYAF-SL--ERTGQNGLAESVIRDAKDSAITGFQKKAVD 692 (1238)
T ss_pred HHHHHhh--------hHHHHHHHHHHHHHHH-HH--HHHhhhhHHHHHHHHHHHHHHHHHhhhhhH
Confidence 4433444 8999999997766554 22 35554 36788888888888888777766
No 71
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.03 E-value=1.4e-05 Score=71.33 Aligned_cols=67 Identities=15% Similarity=0.245 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHhhCC
Q 000323 1009 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNT-NSVGKDDMFSYSVKHNE 1080 (1669)
Q Consensus 1009 d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~-~~eea~emlekAVelnP 1080 (1669)
+.+.|..+|..++.. ++|+.|+..|.+||++||+++.+|+.++.+|..++ ...++..+|++|++++|
T Consensus 2 ~a~~~~~~g~~~~~~-----~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQ-----GDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHT-----THHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 457899999988887 56799999999999999999999999999999999 68899999999999998
No 72
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.02 E-value=0.0031 Score=75.45 Aligned_cols=311 Identities=15% Similarity=0.074 Sum_probs=219.2
Q ss_pred ccchHHHHHH-----HHHHHhcccc--cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 000323 1006 VELSNEQCVE-----MALLILNQDA--NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKH 1078 (1669)
Q Consensus 1006 ~~~d~qlWLe-----lAl~~Lnq~~--n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVel 1078 (1669)
.+.....|.. -|.+.++..- -.-|+|.+|--++.++=+.-+.-..++..=+..=-++++...++.++.+|.+.
T Consensus 68 ~~~~~~~w~~~rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~ 147 (400)
T COG3071 68 TPAHTRGWFSRRKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL 147 (400)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc
Confidence 3344466655 3455555543 23588999999999988888887777777777777888888899999999999
Q ss_pred CCCCHH-----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHH
Q 000323 1079 NEGSYA-----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRIS 1153 (1669)
Q Consensus 1079 nP~NY~-----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~ 1153 (1669)
.++.-. ....-++++ .|+.|+.-+.++.+.. |-. .+++..++++|..+|+|+..+..+.
T Consensus 148 ~~~~~l~v~ltrarlll~~~--------d~~aA~~~v~~ll~~~-pr~-------~~vlrLa~r~y~~~g~~~~ll~~l~ 211 (400)
T COG3071 148 AGDDTLAVELTRARLLLNRR--------DYPAARENVDQLLEMT-PRH-------PEVLRLALRAYIRLGAWQALLAILP 211 (400)
T ss_pred CCCchHHHHHHHHHHHHhCC--------CchhHHHHHHHHHHhC-cCC-------hHHHHHHHHHHHHhccHHHHHHHHH
Confidence 765554 556778888 8999999998888887 444 7999999999999999999999777
Q ss_pred hhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHH
Q 000323 1154 RLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKL 1233 (1669)
Q Consensus 1154 rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL 1233 (1669)
.|....+-+++| +..+... .|..+ +++.... .-+..|
T Consensus 212 ~L~ka~~l~~~e-------~~~le~~--------------a~~gl----L~q~~~~------------------~~~~gL 248 (400)
T COG3071 212 KLRKAGLLSDEE-------AARLEQQ--------------AWEGL----LQQARDD------------------NGSEGL 248 (400)
T ss_pred HHHHccCCChHH-------HHHHHHH--------------HHHHH----HHHHhcc------------------ccchHH
Confidence 777522222221 1111110 01111 1111000 000001
Q ss_pred HHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhcccCCccH
Q 000323 1234 IEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSS 1313 (1669)
Q Consensus 1234 ~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m~~~A~ 1313 (1669)
.+..+. +.. ..|.+....+.++..+|.+++.+.|..+....++..-+.- |.....++.-.+ +.+=+
T Consensus 249 ----~~~W~~------~pr--~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~l~~~d-~~~l~ 314 (400)
T COG3071 249 ----KTWWKN------QPR--KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIPRLRPGD-PEPLI 314 (400)
T ss_pred ----HHHHHh------ccH--HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHhhcCCCC-chHHH
Confidence 011110 000 2466677777888888999999999999999999887766 655555666665 77778
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcc
Q 000323 1314 VGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPE 1393 (1669)
Q Consensus 1314 svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSD 1393 (1669)
...++.+...|+++. +|.-|-+.++.++.|.+|..-.+. ++....+ .+|
T Consensus 315 k~~e~~l~~h~~~p~----L~~tLG~L~~k~~~w~kA~~~lea-----------------Al~~~~s----------~~~ 363 (400)
T COG3071 315 KAAEKWLKQHPEDPL----LLSTLGRLALKNKLWGKASEALEA-----------------ALKLRPS----------ASD 363 (400)
T ss_pred HHHHHHHHhCCCChh----HHHHHHHHHHHhhHHHHHHHHHHH-----------------HHhcCCC----------hhh
Confidence 999999999999995 999999999999999999887743 2222211 123
Q ss_pred cccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhh
Q 000323 1394 FSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKA 1434 (1669)
Q Consensus 1394 fy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALka 1434 (1669)
| .++++.+-+ .|...+|...++.+|-.
T Consensus 364 -~-----------~~la~~~~~--~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 364 -Y-----------AELADALDQ--LGEPEEAEQVRREALLL 390 (400)
T ss_pred -H-----------HHHHHHHHH--cCChHHHHHHHHHHHHH
Confidence 4 889999999 99999999999999943
No 73
>PLN02789 farnesyltranstransferase
Probab=98.02 E-value=0.00019 Score=83.97 Aligned_cols=115 Identities=17% Similarity=0.197 Sum_probs=97.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHhhCCCCHHHHH----HHHhcCCCcccchhhH
Q 000323 1029 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNS-VGKDDMFSYSVKHNEGSYALWL----MYINSRTPLNHRLDAY 1103 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~-eea~emlekAVelnP~NY~Lwl----mYInsr~slddrl~~Y 1103 (1669)
+.++.|+.++..+|++||.+..+|.....++...+.. +++.+.+.+|++.+|.||.+|. ++.+.+ . ..+
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~----~--~~~ 124 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLG----P--DAA 124 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcC----c--hhh
Confidence 3458999999999999999999999999998888743 6789999999999999999875 333332 1 135
Q ss_pred HHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1104 DAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1104 dkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
++++.++..+.+.+ +.. -.+|..+.-++...|+|++||+..+++..
T Consensus 125 ~~el~~~~kal~~d-pkN-------y~AW~~R~w~l~~l~~~~eeL~~~~~~I~ 170 (320)
T PLN02789 125 NKELEFTRKILSLD-AKN-------YHAWSHRQWVLRTLGGWEDELEYCHQLLE 170 (320)
T ss_pred HHHHHHHHHHHHhC-ccc-------HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 78899999999888 555 88999999999999999999998888875
No 74
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.00 E-value=0.0048 Score=70.49 Aligned_cols=321 Identities=12% Similarity=-0.055 Sum_probs=187.0
Q ss_pred cchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCH
Q 000323 1007 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADP---TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY 1083 (1669)
Q Consensus 1007 ~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINP---tSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY 1083 (1669)
|.....|.-+|..+..... .+.|...+.++++.+| +..+.++..+.++...+..+++.++++++++.+|++.
T Consensus 3 p~~~~a~~~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~ 77 (355)
T cd05804 3 PDFALGHAAAALLLLLGGE-----RPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL 77 (355)
T ss_pred CccHHHHHHHHHHHHhcCC-----cchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence 4445667777766655543 3444556666666666 5577888888888889988999999999999999998
Q ss_pred HHHH---HHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhccccc
Q 000323 1084 ALWL---MYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPAT 1160 (1669)
Q Consensus 1084 ~Lwl---mYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al 1160 (1669)
..+. .|..... +.+ ..+.+..++......+ ++. ...+..+..++...|+++.|+..+.+...
T Consensus 78 ~a~~~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~-~~~-------~~~~~~~a~~~~~~G~~~~A~~~~~~al~--- 142 (355)
T cd05804 78 LALKLHLGAFGLGD-FSG---MRDHVARVLPLWAPEN-PDY-------WYLLGMLAFGLEEAGQYDRAEEAARRALE--- 142 (355)
T ss_pred HHHHHhHHHHHhcc-ccc---CchhHHHHHhccCcCC-CCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---
Confidence 7554 3433332 123 3355555554433333 443 56677788899999999999998777765
Q ss_pred CCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHH
Q 000323 1161 GSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNS 1240 (1669)
Q Consensus 1161 ~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dY 1240 (1669)
..|. + .| ...+++.+|...|..+++... +.+.++..|......
T Consensus 143 --~~p~--------------~---~~--------~~~~la~i~~~~g~~~eA~~~---l~~~l~~~~~~~~~~------- 185 (355)
T cd05804 143 --LNPD--------------D---AW--------AVHAVAHVLEMQGRFKEGIAF---MESWRDTWDCSSMLR------- 185 (355)
T ss_pred --hCCC--------------C---cH--------HHHHHHHHHHHcCCHHHHHHH---HHhhhhccCCCcchh-------
Confidence 2331 1 11 123356667777777777665 444444333210000
Q ss_pred HhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH-HH-----HHHHHhhcccCCccHH
Q 000323 1241 VELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VL-----MKARLQKHDFGDLSSV 1314 (1669)
Q Consensus 1241 Y~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL-~L-----~AAyL~~K~m~~~A~s 1314 (1669)
...=..+.+++...++.+.|+.+|++++...|....+ .+ ...++...+ ......
T Consensus 186 -------------------~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~~~ 245 (355)
T cd05804 186 -------------------GHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAG-HVDVGD 245 (355)
T ss_pred -------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcC-CCChHH
Confidence 0001122455566889999999999998777743333 22 222233332 233334
Q ss_pred HHHHHHHhCCCC-C-chHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCc
Q 000323 1315 GFEEALIKWPKG-V-PGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDP 1392 (1669)
Q Consensus 1315 vle~AL~~~PkN-a-~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vS 1392 (1669)
-|+.+....+.. . +.+...+.-.+...+..++.+.|..+..+--. .+.-. .... ....
T Consensus 246 ~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~-~~~~~-------~~~~--~~~~---------- 305 (355)
T cd05804 246 RWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG-RASSA-------DDNK--QPAR---------- 305 (355)
T ss_pred HHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH-HHhcc-------Cchh--hhHH----------
Confidence 454444332111 0 33333444567778888899999988866111 00000 0000 0000
Q ss_pred ccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhc
Q 000323 1393 EFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAA 1435 (1669)
Q Consensus 1393 Dfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkan 1435 (1669)
.+ .+-.+...++|. +|+..+|......||...
T Consensus 306 --------~~-~~~~l~A~~~~~--~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 306 --------DV-GLPLAEALYAFA--EGNYATALELLGPVRDDL 337 (355)
T ss_pred --------hh-hHHHHHHHHHHH--cCCHHHHHHHHHHHHHHH
Confidence 00 011445556667 999999999999999765
No 75
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.99 E-value=0.00048 Score=85.62 Aligned_cols=304 Identities=18% Similarity=0.204 Sum_probs=200.8
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHH----HHHHhcCCCcccchh
Q 000323 1026 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALW----LMYINSRTPLNHRLD 1101 (1669)
Q Consensus 1026 n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~Lw----lmYInsr~slddrl~ 1101 (1669)
++.|+-+.|++.-.++|.+|+.+..+|..|+.+|..-++-.++..+|..|....|+|-.+| ++=+..|
T Consensus 52 ~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmR-------- 123 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMR-------- 123 (700)
T ss_pred hcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH--------
Confidence 4678889999999999999999999999999999888888899999999999999999844 4444455
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccc-------------
Q 000323 1102 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSL------------- 1168 (1669)
Q Consensus 1102 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~l------------- 1168 (1669)
.|+.....=-++.... +.. ..-|+-.+--+...|+|..|+..++..+++...+.+...+
T Consensus 124 d~~~~~~tr~~LLql~-~~~-------ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~ 195 (700)
T KOG1156|consen 124 DYEGYLETRNQLLQLR-PSQ-------RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQIL 195 (700)
T ss_pred hhhhHHHHHHHHHHhh-hhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH
Confidence 5554444433334444 333 4556666666777899999999999998866533322111
Q ss_pred ----hHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHH--------
Q 000323 1169 ----FLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEM-------- 1236 (1669)
Q Consensus 1169 ----SLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~sm-------- 1236 (1669)
++.+.+..|....++++ -.+.|....+++++..+..+||..+ |..++.-+|||......+
T Consensus 196 ~E~g~~q~ale~L~~~e~~i~-----Dkla~~e~ka~l~~kl~~lEeA~~~---y~~Ll~rnPdn~~Yy~~l~~~lgk~~ 267 (700)
T KOG1156|consen 196 IEAGSLQKALEHLLDNEKQIV-----DKLAFEETKADLLMKLGQLEEAVKV---YRRLLERNPDNLDYYEGLEKALGKIK 267 (700)
T ss_pred HHcccHHHHHHHHHhhhhHHH-----HHHHHhhhHHHHHHHHhhHHhHHHH---HHHHHhhCchhHHHHHHHHHHHHHHh
Confidence 12223333333333222 0455666778888888888888777 777777777775432211
Q ss_pred ----HH-HHHhh-----------------hcCCcchhhhh----------------------hhc---------------
Q 000323 1237 ----AV-NSVEL-----------------YSNGESLEKET----------------------NLR--------------- 1257 (1669)
Q Consensus 1237 ----A~-dYY~~-----------------~~ndesla~~~----------------------~~k--------------- 1257 (1669)
++ .-|.. +.+++++.... ++.
T Consensus 268 d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~ 347 (700)
T KOG1156|consen 268 DMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQ 347 (700)
T ss_pred hhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHH
Confidence 01 01110 01111111100 000
Q ss_pred --------------hhhHhHHHHHHHH-------HHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhccc-CCccHHH
Q 000323 1258 --------------SAHCFAVNHIWCM-------AVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDF-GDLSSVG 1315 (1669)
Q Consensus 1258 --------------t~~~fKLN~IR~l-------I~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m-~~~A~sv 1315 (1669)
-.++-|...+.++ -..++.+.|..+.+.++..+|+=+++-+.-++|.+..+ .+.|...
T Consensus 348 ~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~ 427 (700)
T KOG1156|consen 348 HSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAW 427 (700)
T ss_pred hhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHH
Confidence 0011122222221 12559999999999999999999999888888877654 6678888
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000323 1316 FEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRW 1357 (1669)
Q Consensus 1316 le~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~f 1357 (1669)
+++|-+.+--+.- +=--++.+.++.+..++|..+|..|
T Consensus 428 l~ea~elD~aDR~----INsKcAKYmLrAn~i~eA~~~~skF 465 (700)
T KOG1156|consen 428 LDEAQELDTADRA----INSKCAKYMLRANEIEEAEEVLSKF 465 (700)
T ss_pred HHHHHhccchhHH----HHHHHHHHHHHccccHHHHHHHHHh
Confidence 8999988866665 2113567899999999999999773
No 76
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.0018 Score=80.12 Aligned_cols=314 Identities=13% Similarity=0.148 Sum_probs=188.1
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCC-CHH----HHHHHHhcCCCcccch
Q 000323 1026 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG-SYA----LWLMYINSRTPLNHRL 1100 (1669)
Q Consensus 1026 n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~-NY~----LwlmYInsr~slddrl 1100 (1669)
...|+|++||++|+|.++.+-.+-+.-.....+-. ..-..++ ..++|...|. +|. .+..||..+
T Consensus 121 Yrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~--~a~l~~~--~~q~v~~v~e~syel~yN~Ac~~i~~g------- 189 (652)
T KOG2376|consen 121 YRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV--AAALQVQ--LLQSVPEVPEDSYELLYNTACILIENG------- 189 (652)
T ss_pred HHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH--HHhhhHH--HHHhccCCCcchHHHHHHHHHHHHhcc-------
Confidence 34588999999999999999998877776544421 1111222 6677777776 555 788999999
Q ss_pred hhHHHHHHHHHHh----hhc-CCCCc--chhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccc--------------
Q 000323 1101 DAYDAALSVLCRC----ASA-SDGDE--MHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPA-------------- 1159 (1669)
Q Consensus 1101 ~~YdkAI~aLe~l----as~-~~~Dr--~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~A-------------- 1159 (1669)
.|+.|++.|+.. -+. .+.|. ++-=..|-=|-+||+..+.+.|+.++|.+.+..+....
T Consensus 190 -ky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNL 268 (652)
T KOG2376|consen 190 -KYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNL 268 (652)
T ss_pred -cHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcch
Confidence 999999999776 111 11222 12223444566888889999999999999777776511
Q ss_pred --cCCCC---cccchHHHHHHhhccCCcchhhHHHHH-HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHH
Q 000323 1160 --TGSND---RHSLFLSDILTCLTISDKLIFWVCCVY-LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKL 1233 (1669)
Q Consensus 1160 --l~g~s---E~~lSLsKi~~YLt~sDR~~AWL~~iY-llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL 1233 (1669)
+.+.. ++++..++=..+.+..+.+.+.|...+ ..+|+. .+.+-|-.|+......+ ...+-.+-|+-.+-.
T Consensus 269 va~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N-~~lL~l~tnk~~q~r~~---~a~lp~~~p~~~~~~ 344 (652)
T KOG2376|consen 269 VALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRN-NALLALFTNKMDQVREL---SASLPGMSPESLFPI 344 (652)
T ss_pred hhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhHHHHHHH---HHhCCccCchHHHHH
Confidence 11111 112222344455666666666777777 444443 33444445543333322 222222222222211
Q ss_pred HHHHHHHHhh--hcCCcchhhhh---hhchhhHhHHHHHHHHHHhcCHHHHHHHHH--------HHHHhCCCchhH-HHH
Q 000323 1234 IEMAVNSVEL--YSNGESLEKET---NLRSAHCFAVNHIWCMAVLNGLECSMNLLE--------KYIKLYPSCLEL-VLM 1299 (1669)
Q Consensus 1234 ~smA~dYY~~--~~ndesla~~~---~~kt~~~fKLN~IR~lI~LEDse~A~~Lfd--------klLk~~P~d~eL-~L~ 1299 (1669)
+-.+.-.+.. ..+-..+-... .+.-....++-.++..|..++++.|+..+. .+.+.--.=.-+ .+.
T Consensus 345 ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv 424 (652)
T KOG2376|consen 345 LLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIV 424 (652)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHH
Confidence 1110000000 00000000000 011123344454666666779999998888 555544333344 666
Q ss_pred HHHHhhcccCCccHHHHHHHHHhCCCCCc---hHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000323 1300 KARLQKHDFGDLSSVGFEEALIKWPKGVP---GIQCIWNQYVEYALQNGRHDFAAELMDR 1356 (1669)
Q Consensus 1300 AAyL~~K~m~~~A~svle~AL~~~PkNa~---g~~caW~QLIq~al~~en~d~Ai~Lc~~ 1356 (1669)
+.|...++ ...|..+|++|+.-|-+... ...|.|-+++...++.|+..+|..+.++
T Consensus 425 ~l~~~~~~-~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~lee 483 (652)
T KOG2376|consen 425 ALYYKIKD-NDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEE 483 (652)
T ss_pred HHHHhccC-CccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHH
Confidence 77766665 77788999999998887766 7889999999999999999999999877
No 77
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.96 E-value=0.00033 Score=86.84 Aligned_cols=362 Identities=17% Similarity=0.152 Sum_probs=198.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhh
Q 000323 1129 LDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLEC 1208 (1669)
Q Consensus 1129 LDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~ 1208 (1669)
.|++|+.++++..+|++++|+..|...+. .+-|+ +.+..+-+.+|+..|+
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~--------------------~I~Dk----------~~~~E~rA~ll~kLg~ 53 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEK--------------------QILDK----------LAVLEKRAELLLKLGR 53 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhh--------------------hCCCH----------HHHHHHHHHHHHHcCC
Confidence 58999999999999999999996644332 12343 3345567888999999
Q ss_pred hhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 000323 1209 EKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIK 1288 (1669)
Q Consensus 1209 ~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk 1288 (1669)
.+||..+ |..+++.+|+|....-.+. ...-. .. -+.-++.+...++|+.+-+
T Consensus 54 ~~eA~~~---y~~Li~rNPdn~~Yy~~L~-~~~g~---------------------~~---~~~~~~~~~~~~~y~~l~~ 105 (517)
T PF12569_consen 54 KEEAEKI---YRELIDRNPDNYDYYRGLE-EALGL---------------------QL---QLSDEDVEKLLELYDELAE 105 (517)
T ss_pred HHHHHHH---HHHHHHHCCCcHHHHHHHH-HHHhh---------------------hc---ccccccHHHHHHHHHHHHH
Confidence 9999999 9999999999987665431 11100 00 0011133444444555544
Q ss_pred hCCCchhH-H-------------HHHHHHhh--cccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChH----
Q 000323 1289 LYPSCLEL-V-------------LMKARLQK--HDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHD---- 1348 (1669)
Q Consensus 1289 ~~P~d~eL-~-------------L~AAyL~~--K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d---- 1348 (1669)
.+|.+.-+ . ++..||.. ++ +..+..+-.+.|-.+|.....+..+-..|+...-..+.+.
T Consensus 106 ~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K-gvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~ 184 (517)
T PF12569_consen 106 KYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK-GVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDD 184 (517)
T ss_pred hCccccchhHhhcccCCHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccc
Confidence 44443332 1 12222211 11 2222221122222233333322222222222111111110
Q ss_pred -----HHHHHHHHHHHhhhhccc-ccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHH
Q 000323 1349 -----FAAELMDRWFHSVWKVQY-SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWN 1422 (1669)
Q Consensus 1349 -----~Ai~Lc~~ff~gia~~Q~-~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~ 1422 (1669)
-..-|..-||.+--+... ..++|++.+.++..+.+. +-|+| ...+-+|-. .|+++
T Consensus 185 ~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt------~~ely-----------~~KarilKh--~G~~~ 245 (517)
T PF12569_consen 185 EEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT------LVELY-----------MTKARILKH--AGDLK 245 (517)
T ss_pred cccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------cHHHH-----------HHHHHHHHH--CCCHH
Confidence 000111123333222222 444555555555444221 35667 677778877 88888
Q ss_pred HHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHHHHHHhhhcccccccccchhhhccccchhhHH
Q 000323 1423 EARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDRARSLPYLKLLPRQFINNIERPRLQQ 1502 (1669)
Q Consensus 1423 EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~~~KtVsTYLDTAWILf~~~~lARiYI~~i~k~rv~~ 1502 (1669)
+|..++|.|-+.+... -..-+..|.|+.-.+ ..++|+.|-. +|.+...
T Consensus 246 ~Aa~~~~~Ar~LD~~D--RyiNsK~aKy~LRa~-~~e~A~~~~~--------------~Ftr~~~--------------- 293 (517)
T PF12569_consen 246 EAAEAMDEARELDLAD--RYINSKCAKYLLRAG-RIEEAEKTAS--------------LFTREDV--------------- 293 (517)
T ss_pred HHHHHHHHHHhCChhh--HHHHHHHHHHHHHCC-CHHHHHHHHH--------------hhcCCCC---------------
Confidence 8888888888888866 333445555655444 3555555433 3433221
Q ss_pred HHhhhcCCCCCChhhHHHHHhhccCCCCcccccccccchhHHHHHHHhhcCcchhhHHHHHHHhhccCCCCCCCCCchhH
Q 000323 1503 LIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNKDHNPNITDAVPESV 1582 (1669)
Q Consensus 1503 liDqaL~~~S~dss~~nkALE~W~g~slLpqKI~~kKyi~dfVE~ime~~P~Ny~Lal~v~kll~k~~~~~~~d~~s~~~ 1582 (1669)
+..++.+..=-+|+ +..+.++..- =.+|++||--+..+.+||. +---.+.
T Consensus 294 ----------~~~~~L~~mQc~Wf--------------~~e~a~a~~r--~~~~~~ALk~~~~v~k~f~----~~~~DQf 343 (517)
T PF12569_consen 294 ----------DPLSNLNDMQCMWF--------------ETECAEAYLR--QGDYGLALKRFHAVLKHFD----DFEEDQF 343 (517)
T ss_pred ----------CcccCHHHHHHHHH--------------HHHHHHHHHH--HhhHHHHHHHHHHHHHHHH----HHhcccc
Confidence 11112333334675 3444454443 2689999999999999988 4444455
Q ss_pred HHHHhhhhhhhhhccCCCCchHHHHHHHHHhhhchhHHHHHHHHHHhhhccccchHHHHHHHHhhhcc
Q 000323 1583 LFWASSSLVSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPFSIKLWKCYYDLSKT 1650 (1669)
Q Consensus 1583 ~fwA~s~l~~ai~~a~pvape~vWveaa~~l~~l~~~~~i~~rfy~~AlsvyPfS~~LW~~y~~~~~~ 1650 (1669)
-|-.-.+==..+ ..||+--.|.+.|.+ +.||-+|. ..+++.|+.+--.
T Consensus 344 DFH~Yc~RK~t~---------r~Y~~~L~~ed~l~~-----~~~y~raa------~~ai~iYl~l~d~ 391 (517)
T PF12569_consen 344 DFHSYCLRKMTL---------RAYVDMLRWEDKLRS-----HPFYRRAA------KGAIRIYLELHDK 391 (517)
T ss_pred cHHHHHHhhccH---------HHHHHHHHHHHHhhc-----CHHHHHHH------HHHHHHHHHHhcC
Confidence 555443333333 467999999999998 89999986 5677888877543
No 78
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.95 E-value=8.9e-05 Score=73.41 Aligned_cols=103 Identities=15% Similarity=0.089 Sum_probs=87.7
Q ss_pred hhccchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCH
Q 000323 1004 KQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY 1083 (1669)
Q Consensus 1004 e~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY 1083 (1669)
+..|.+...-+.+|..++.. |+++.|..+|..+++++|+++.+|+.++.+|...+....+..+|++|++.+|.+.
T Consensus 11 ~~~p~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 85 (135)
T TIGR02552 11 GLDSEQLEQIYALAYNLYQQ-----GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDP 85 (135)
T ss_pred cCChhhHHHHHHHHHHHHHc-----ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 34455556667777777766 5579999999999999999999999999999999988899999999999999986
Q ss_pred H----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCC
Q 000323 1084 A----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD 1120 (1669)
Q Consensus 1084 ~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~D 1120 (1669)
. ++..|...+ .+++|+..|....+.. |+
T Consensus 86 ~~~~~la~~~~~~g--------~~~~A~~~~~~al~~~-p~ 117 (135)
T TIGR02552 86 RPYFHAAECLLALG--------EPESALKALDLAIEIC-GE 117 (135)
T ss_pred HHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhc-cc
Confidence 6 677788888 8999999998888877 44
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.89 E-value=0.0023 Score=73.04 Aligned_cols=128 Identities=16% Similarity=0.064 Sum_probs=92.0
Q ss_pred hHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHH---HHHHHHhCCCCchHHHHHHHHHhhCCCCHH-
Q 000323 1009 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWIT---YLLIFYSNTNSVGKDDMFSYSVKHNEGSYA- 1084 (1669)
Q Consensus 1009 d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~---yl~lY~~~~~~eea~emlekAVelnP~NY~- 1084 (1669)
..+.+.-.|..+... |+++.|+.++.++|+.+|++..+|.. ++......+....+...++.+....|....
T Consensus 42 ~~e~~~~~a~~~~~~-----g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 116 (355)
T cd05804 42 ERERAHVEALSAWIA-----GDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYL 116 (355)
T ss_pred HHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHH
Confidence 345555556655554 45699999999999999999999883 222222223333344445444466666655
Q ss_pred ---HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1085 ---LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1085 ---LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
++..|...+ .|++|+..+++..+.. |+. ..++..+.++|.+.|++++|+..+.+...
T Consensus 117 ~~~~a~~~~~~G--------~~~~A~~~~~~al~~~-p~~-------~~~~~~la~i~~~~g~~~eA~~~l~~~l~ 176 (355)
T cd05804 117 LGMLAFGLEEAG--------QYDRAEEAARRALELN-PDD-------AWAVHAVAHVLEMQGRFKEGIAFMESWRD 176 (355)
T ss_pred HHHHHHHHHHcC--------CHHHHHHHHHHHHhhC-CCC-------cHHHHHHHHHHHHcCCHHHHHHHHHhhhh
Confidence 445777788 8899999999999988 443 57788999999999999999997766654
No 80
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.88 E-value=8.6e-05 Score=76.85 Aligned_cols=95 Identities=8% Similarity=-0.081 Sum_probs=82.4
Q ss_pred HHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHH
Q 000323 1013 CVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLM 1088 (1669)
Q Consensus 1013 WLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----Lwlm 1088 (1669)
|..++..+.. .|+++.|+..|.+++.++|.++.+|+.++.++...+...++.+.|++|++++|++.. ++..
T Consensus 27 ~~~~g~~~~~-----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~ 101 (144)
T PRK15359 27 VYASGYASWQ-----EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVC 101 (144)
T ss_pred HHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 4455554443 467899999999999999999999999999999999999999999999999999977 6678
Q ss_pred HHhcCCCcccchhhHHHHHHHHHHhhhcCCCCc
Q 000323 1089 YINSRTPLNHRLDAYDAALSVLCRCASASDGDE 1121 (1669)
Q Consensus 1089 YInsr~slddrl~~YdkAI~aLe~las~~~~Dr 1121 (1669)
|...+ .+++|+..|....+.. |+.
T Consensus 102 l~~~g--------~~~eAi~~~~~Al~~~-p~~ 125 (144)
T PRK15359 102 LKMMG--------EPGLAREAFQTAIKMS-YAD 125 (144)
T ss_pred HHHcC--------CHHHHHHHHHHHHHhC-CCC
Confidence 88888 8899999999988887 443
No 81
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.0013 Score=78.66 Aligned_cols=289 Identities=14% Similarity=0.099 Sum_probs=206.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH---HHHHHHhcCCCcccchhhHHHHH
Q 000323 1031 MKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---LWLMYINSRTPLNHRLDAYDAAL 1107 (1669)
Q Consensus 1031 ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~---LwlmYInsr~slddrl~~YdkAI 1107 (1669)
+..+..++-+-+...|++..+...++.+|+..|+..++..-|+++--++|++.. ++-|.+..+. .|++--
T Consensus 214 ~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg-------~~e~~~ 286 (564)
T KOG1174|consen 214 DASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEG-------GCEQDS 286 (564)
T ss_pred hhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhcc-------CHhhHH
Confidence 577888899999999999999999999999999888899999999999998877 7777777762 344444
Q ss_pred HHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhH
Q 000323 1108 SVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWV 1187 (1669)
Q Consensus 1108 ~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL 1187 (1669)
..-|.+.+..+.. + .-|+.-.+++--.++|.-|+. +-..++.. +|+ .+..|
T Consensus 287 ~L~~~Lf~~~~~t---a-----~~wfV~~~~l~~~K~~~rAL~----~~eK~I~~-~~r-----~~~al----------- 337 (564)
T KOG1174|consen 287 ALMDYLFAKVKYT---A-----SHWFVHAQLLYDEKKFERALN----FVEKCIDS-EPR-----NHEAL----------- 337 (564)
T ss_pred HHHHHHHhhhhcc---h-----hhhhhhhhhhhhhhhHHHHHH----HHHHHhcc-Ccc-----cchHH-----------
Confidence 4445565544222 2 334455566667888888887 33333332 222 12222
Q ss_pred HHHHHHHhhccchHHHhhhhhhhhhhc-cCCCCcccchhhHHHHHHHH-HHHHHHHhhhcCCcchhhhhhhchhhHhHHH
Q 000323 1188 CCVYLVIYRKLPDAVLQLLECEKELFA-IDWPPVQLEDDEKQRAIKLI-EMAVNSVELYSNGESLEKETNLRSAHCFAVN 1265 (1669)
Q Consensus 1188 ~~iYllrYrvLPGd~y~q~e~~KEAf~-I~W~y~~vlk~EPdnalAL~-smA~dYY~~~~ndesla~~~~~kt~~~fKLN 1265 (1669)
.|-|+++.+.++..+|.- . -.|.-|- .. .+.|+ -
T Consensus 338 ---------ilKG~lL~~~~R~~~A~IaF------------R~Aq~Lap~r-L~~Y~----------------------G 373 (564)
T KOG1174|consen 338 ---------ILKGRLLIALERHTQAVIAF------------RTAQMLAPYR-LEIYR----------------------G 373 (564)
T ss_pred ---------HhccHHHHhccchHHHHHHH------------HHHHhcchhh-HHHHH----------------------H
Confidence 345666777777666522 1 0111111 11 23333 2
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCchhH-HHHHHHH--hhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Q 000323 1266 HIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARL--QKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYAL 1342 (1669)
Q Consensus 1266 ~IR~lI~LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL--~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al 1342 (1669)
++-+|.+.+...+|+-+..-.++.-|.++.- .|+++-+ ..--|-++|...++++|.++|.-.+ +=+-+++...
T Consensus 374 L~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~----AV~~~AEL~~ 449 (564)
T KOG1174|consen 374 LFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTP----AVNLIAELCQ 449 (564)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHH----HHHHHHHHHH
Confidence 4667777779999999999999999999987 7776443 3333567899999999999999999 6677799999
Q ss_pred HcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHH
Q 000323 1343 QNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWN 1422 (1669)
Q Consensus 1343 ~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~ 1422 (1669)
..|.+..++.|+++++.-++ | |..--.|||.+-- .+.++
T Consensus 450 ~Eg~~~D~i~LLe~~L~~~~------------------------------D---------~~LH~~Lgd~~~A--~Ne~Q 488 (564)
T KOG1174|consen 450 VEGPTKDIIKLLEKHLIIFP------------------------------D---------VNLHNHLGDIMRA--QNEPQ 488 (564)
T ss_pred hhCccchHHHHHHHHHhhcc------------------------------c---------cHHHHHHHHHHHH--hhhHH
Confidence 99999999999988554322 1 1122678998888 99999
Q ss_pred HHHHHHHHHHhhccCCcHHHHHHH
Q 000323 1423 EARLAIDAALKAAASEHFKHCVRE 1446 (1669)
Q Consensus 1423 EAfaAYDKALkanp~N~~i~cLNN 1446 (1669)
||.+-|-+||..+|.+ ...+.-
T Consensus 489 ~am~~y~~ALr~dP~~--~~sl~G 510 (564)
T KOG1174|consen 489 KAMEYYYKALRQDPKS--KRTLRG 510 (564)
T ss_pred HHHHHHHHHHhcCccc--hHHHHH
Confidence 9999999999999988 666543
No 82
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.0025 Score=79.02 Aligned_cols=384 Identities=15% Similarity=0.110 Sum_probs=206.0
Q ss_pred hCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH---HHHHHHhcCCCcccchhhHHHHHHH-HHHhhhcCCC
Q 000323 1044 ADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---LWLMYINSRTPLNHRLDAYDAALSV-LCRCASASDG 1119 (1669)
Q Consensus 1044 INPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~---LwlmYInsr~slddrl~~YdkAI~a-Le~las~~~~ 1119 (1669)
.++.+.-+.-..++++|+.+.-.++.+-|++-++++-+.+. -..|- +-..|+.+ +.+.....+.
T Consensus 105 ~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~------------a~~a~l~~~~~q~v~~v~e 172 (652)
T KOG2376|consen 105 LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL------------AVAAALQVQLLQSVPEVPE 172 (652)
T ss_pred ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH------------HHHHhhhHHHHHhccCCCc
Confidence 45555556666666666666666666777776666665555 11111 11222222 2222222222
Q ss_pred CcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHH---HHHhh
Q 000323 1120 DEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY---LVIYR 1196 (1669)
Q Consensus 1120 Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iY---llrYr 1196 (1669)
+- -|.++-.+=.+.-.|+|.+||+ |+.+|.. .-+.-|..+|.+ -..| +--.+
T Consensus 173 ~s-------yel~yN~Ac~~i~~gky~qA~e----lL~kA~~----------~~~e~l~~~d~~----eEeie~el~~Ir 227 (652)
T KOG2376|consen 173 DS-------YELLYNTACILIENGKYNQAIE----LLEKALR----------ICREKLEDEDTN----EEEIEEELNPIR 227 (652)
T ss_pred ch-------HHHHHHHHHHHHhcccHHHHHH----HHHHHHH----------HHHHhhcccccc----hhhHHHHHHHHH
Confidence 22 5777888888899999999999 5543311 112223445554 2223 22235
Q ss_pred ccchHHHhhhhhhhhhhccCCCCcccchhhHHHH----HHHHHHHHHHHhhhcCCcchhhhh--hhchhhHhHH------
Q 000323 1197 KLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRA----IKLIEMAVNSVELYSNGESLEKET--NLRSAHCFAV------ 1264 (1669)
Q Consensus 1197 vLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdna----lAL~smA~dYY~~~~ndesla~~~--~~kt~~~fKL------ 1264 (1669)
+.+.=+++..|..+|+..| |+.+++.+|-.. ++.-.+ . ++.++.....+. -.+-.+++++
T Consensus 228 vQlayVlQ~~Gqt~ea~~i---y~~~i~~~~~D~~~~Av~~NNL----v-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~ 299 (652)
T KOG2376|consen 228 VQLAYVLQLQGQTAEASSI---YVDIIKRNPADEPSLAVAVNNL----V-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLS 299 (652)
T ss_pred HHHHHHHHHhcchHHHHHH---HHHHHHhcCCCchHHHHHhcch----h-hhccccccCchHHHHHHHHHHHHhHHHHHH
Confidence 5667778888999999998 887766554333 322111 1 112222222211 0011111111
Q ss_pred --------HHHHHHH---H-hcCHHHHHHHHHHHHHhCCCch-hHHHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHH
Q 000323 1265 --------NHIWCMA---V-LNGLECSMNLLEKYIKLYPSCL-ELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQ 1331 (1669)
Q Consensus 1265 --------N~IR~lI---~-LEDse~A~~LfdklLk~~P~d~-eL~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~ 1331 (1669)
+.++... . .+--.++++++-++-...|... ++.|..+++...+...++..++..-....|.+.-.+.
T Consensus 300 ~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~ 379 (652)
T KOG2376|consen 300 KLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVL 379 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHH
Confidence 1111111 1 3366777777777666665543 3455555543333477889999999999999954333
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH----hhhhccc--ccccchhhhcccCCCCCCCCCCC-------CCccccccc
Q 000323 1332 CIWNQYVEYALQNGRHDFAAELMDRWFH----SVWKVQY--SQVEISDPLVADMSHSSPESTST-------SDPEFSVSN 1398 (1669)
Q Consensus 1332 caW~QLIq~al~~en~d~Ai~Lc~~ff~----gia~~Q~--~~deALDaLrkgns~i~~es~s~-------~vSDfy~~~ 1398 (1669)
.-.+|+.+.+|++..|+++...|.. ++...+. ....++.++.....-. ++.++ ....-.++.
T Consensus 380 ---L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~--~~a~~vl~~Ai~~~~~~~t~s 454 (652)
T KOG2376|consen 380 ---LLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDN--DSASAVLDSAIKWWRKQQTGS 454 (652)
T ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCC--ccHHHHHHHHHHHHHHhcccc
Confidence 3348889999999999999996442 2222222 3333333333221110 00000 000000000
Q ss_pred ccchhhHHHHHHH-HHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHHHHHH--
Q 000323 1399 RNQMDVMFGYLNL-SLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYL-- 1475 (1669)
Q Consensus 1399 ~~Q~d~~fa~LGD-~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~~~KtVsTYL-- 1475 (1669)
-+.-.+|++ +=+....|+-+||..-||.-++++|+. .++|---..= ....|-++|+.|+..+.-..+..
T Consensus 455 ----~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d--~~~l~~lV~a--~~~~d~eka~~l~k~L~p~~~l~~v 526 (652)
T KOG2376|consen 455 ----IALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPND--TDLLVQLVTA--YARLDPEKAESLSKKLPPLKGLKAV 526 (652)
T ss_pred ----hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCch--HHHHHHHHHH--HHhcCHHHHHHHhhcCCCcccchhc
Confidence 011245555 445567899999999999999999976 4444332222 12346789999998442222222
Q ss_pred --h----hhccccccc
Q 000323 1476 --D----RARSLPYLK 1485 (1669)
Q Consensus 1476 --D----TAWILf~~~ 1485 (1669)
| +.|+.+-++
T Consensus 527 dVd~LE~s~ga~~~~~ 542 (652)
T KOG2376|consen 527 DVDALEKSDGAKYSEA 542 (652)
T ss_pred CchHhhhccCcchhhh
Confidence 2 258888776
No 83
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.0014 Score=79.32 Aligned_cols=134 Identities=16% Similarity=0.139 Sum_probs=95.4
Q ss_pred HHHHHH-hcCHHHHHHHHHHHHHhCCCchhH-HHHH-HHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHH
Q 000323 1267 IWCMAV-LNGLECSMNLLEKYIKLYPSCLEL-VLMK-ARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQ 1343 (1669)
Q Consensus 1267 IR~lI~-LEDse~A~~LfdklLk~~P~d~eL-~L~A-AyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~ 1343 (1669)
|..|.. ..+.|.|+..|+++|+++|.-..+ .|.+ -||++|+ ...|+..|.+|+.++|.+-. +|+=|-|
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKN-t~AAi~sYRrAvdi~p~DyR----AWYGLGQ---- 406 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKN-THAAIESYRRAVDINPRDYR----AWYGLGQ---- 406 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcc-cHHHHHHHHHHHhcCchhHH----HHhhhhH----
Confidence 445544 449999999999999999999999 4554 5789997 88999999999999999999 9976655
Q ss_pred cCChHHHHHHHHHHHHhhhhccc-----------------------ccccchhhhcccCCCCCCCCCCCCCccccccccc
Q 000323 1344 NGRHDFAAELMDRWFHSVWKVQY-----------------------SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRN 1400 (1669)
Q Consensus 1344 ~en~d~Ai~Lc~~ff~gia~~Q~-----------------------~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~ 1400 (1669)
|.+++.-=|-++.|+|+ +.++|+.-+++...... ...+-|
T Consensus 407 ------aYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d------te~~~l----- 469 (559)
T KOG1155|consen 407 ------AYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD------TEGSAL----- 469 (559)
T ss_pred ------HHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc------cchHHH-----
Confidence 33333332223333332 66667766665522211 023334
Q ss_pred chhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhh
Q 000323 1401 QMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKA 1434 (1669)
Q Consensus 1401 Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALka 1434 (1669)
..||..+-+ .++.+||-.+|+++++.
T Consensus 470 ------~~LakLye~--l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 470 ------VRLAKLYEE--LKDLNEAAQYYEKYVEV 495 (559)
T ss_pred ------HHHHHHHHH--HHhHHHHHHHHHHHHHH
Confidence 778888888 78888899999988874
No 84
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00023 Score=85.84 Aligned_cols=141 Identities=17% Similarity=0.145 Sum_probs=109.9
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHH
Q 000323 1029 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1104 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~Yd 1104 (1669)
+..++|.-.|+|||.+||....+|..+++=|..+++...+.+.|++||+.||.+|. |+++|.-.. +=.
T Consensus 344 ~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~--------Mh~ 415 (559)
T KOG1155|consen 344 SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMK--------MHF 415 (559)
T ss_pred HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhc--------chH
Confidence 34589999999999999999999999999999999999999999999999999998 889998877 444
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcch
Q 000323 1105 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLI 1184 (1669)
Q Consensus 1105 kAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~ 1184 (1669)
=|+-.|-++..--|.| .-+|.+|-++|-..++.+.||.-+.|-.. -|+-++.....--..|..++|-..
T Consensus 416 YaLyYfqkA~~~kPnD--------sRlw~aLG~CY~kl~~~~eAiKCykrai~---~~dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 416 YALYYFQKALELKPND--------SRLWVALGECYEKLNRLEEAIKCYKRAIL---LGDTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred HHHHHHHHHHhcCCCc--------hHHHHHHHHHHHHhccHHHHHHHHHHHHh---ccccchHHHHHHHHHHHHHHhHHH
Confidence 4666665555555456 46999999999999999999996665442 223333444444456777777666
Q ss_pred hhHH
Q 000323 1185 FWVC 1188 (1669)
Q Consensus 1185 AWL~ 1188 (1669)
|..+
T Consensus 485 Aa~~ 488 (559)
T KOG1155|consen 485 AAQY 488 (559)
T ss_pred HHHH
Confidence 6333
No 85
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.82 E-value=0.00018 Score=84.84 Aligned_cols=85 Identities=16% Similarity=0.132 Sum_probs=77.2
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhH
Q 000323 1028 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAY 1103 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~Y 1103 (1669)
.|+|+.|+.+|.+||+.+|+++.+|+.++.+|...+...++...|++|++++|++.. ++..|...+ .|
T Consensus 15 ~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg--------~~ 86 (356)
T PLN03088 15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE--------EY 86 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC--------CH
Confidence 367899999999999999999999999999999999999999999999999998776 677888888 99
Q ss_pred HHHHHHHHHhhhcCCCC
Q 000323 1104 DAALSVLCRCASASDGD 1120 (1669)
Q Consensus 1104 dkAI~aLe~las~~~~D 1120 (1669)
+.|+..|+++....+.+
T Consensus 87 ~eA~~~~~~al~l~P~~ 103 (356)
T PLN03088 87 QTAKAALEKGASLAPGD 103 (356)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 99999999999887333
No 86
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.82 E-value=0.00085 Score=88.38 Aligned_cols=230 Identities=18% Similarity=0.272 Sum_probs=158.3
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHH
Q 000323 1069 DDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKA 1148 (1669)
Q Consensus 1069 ~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKA 1148 (1669)
.+-|++-|.-+|++--+|.-|+.-...+. ..++|+.+.|++...-+.- ...--+-+|.+++.|+.+-|.-+..
T Consensus 1444 aeDferlvrssPNSSi~WI~YMaf~Lels----EiekAR~iaerAL~tIN~R---EeeEKLNiWiA~lNlEn~yG~eesl 1516 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHLELS----EIEKARKIAERALKTINFR---EEEEKLNIWIAYLNLENAYGTEESL 1516 (1710)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhhh----hhHHHHHHHHHHhhhCCcc---hhHHHHHHHHHHHhHHHhhCcHHHH
Confidence 36789999999999999999998775555 6689999999987643111 1223389999999999999976666
Q ss_pred HHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHH
Q 000323 1149 IQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQ 1228 (1669)
Q Consensus 1149 I~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPd 1228 (1669)
..++.|.-+ . |..| ..|.. +..+|.-.++.++|-.+
T Consensus 1517 ~kVFeRAcq-----y------------------------cd~~-~V~~~-L~~iy~k~ek~~~A~el------------- 1552 (1710)
T KOG1070|consen 1517 KKVFERACQ-----Y------------------------CDAY-TVHLK-LLGIYEKSEKNDEADEL------------- 1552 (1710)
T ss_pred HHHHHHHHH-----h------------------------cchH-HHHHH-HHHHHHHhhcchhHHHH-------------
Confidence 665555554 1 1111 12333 23455555666555444
Q ss_pred HHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHH--HHHHHHHHhcCHHHHHHHHHHHHHhCCC--chhHHHHHHHHh
Q 000323 1229 RAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAV--NHIWCMAVLNGLECSMNLLEKYIKLYPS--CLELVLMKARLQ 1304 (1669)
Q Consensus 1229 nalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKL--N~IR~lI~LEDse~A~~LfdklLk~~P~--d~eL~L~AAyL~ 1304 (1669)
+.+ | .. +.-+.-++ .++..++..++-++|+.++.++|+.-|. -+++.=.-|.|+
T Consensus 1553 --l~~--m----~K--------------KF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1553 --LRL--M----LK--------------KFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred --HHH--H----HH--------------HhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 111 1 11 11112222 2233434455779999999999999999 666644444555
Q ss_pred hccc-CCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH-------------HHHhhhhccc--cc
Q 000323 1305 KHDF-GDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR-------------WFHSVWKVQY--SQ 1368 (1669)
Q Consensus 1305 ~K~m-~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~-------------ff~gia~~Q~--~~ 1368 (1669)
-|++ ++.++..|+..|...||-.- .|+-||.+.+..++.+-+..|.+| ||+-+=.|-+ ..
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtD----lW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTD----LWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchh----HHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 5554 88999999999999999999 999999999999999999999999 6766666555 24
Q ss_pred ccchhhh
Q 000323 1369 VEISDPL 1375 (1669)
Q Consensus 1369 deALDaL 1375 (1669)
++.++..
T Consensus 1687 e~~vE~V 1693 (1710)
T KOG1070|consen 1687 EKNVEYV 1693 (1710)
T ss_pred hhhHHHH
Confidence 4444443
No 87
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.80 E-value=9.9e-05 Score=85.34 Aligned_cols=100 Identities=16% Similarity=0.210 Sum_probs=89.4
Q ss_pred HHHHHHHHHhcccc--cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-----
Q 000323 1012 QCVEMALLILNQDA--NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----- 1084 (1669)
Q Consensus 1012 lWLelAl~~Lnq~~--n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----- 1084 (1669)
-..++|..+=+++. -+.++|.+|++.|..||+++|++++.|+.-+..|++.+.-+.+..-|++|++++| +|+
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-~yskay~R 154 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-HYSKAYGR 154 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-HHHHHHHH
Confidence 47788888888875 3578999999999999999999999999999999999999999999999999996 666
Q ss_pred HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCc
Q 000323 1085 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDE 1121 (1669)
Q Consensus 1085 LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr 1121 (1669)
|++.|..++ .|++|+++|-....-. |+.
T Consensus 155 LG~A~~~~g--------k~~~A~~aykKaLeld-P~N 182 (304)
T KOG0553|consen 155 LGLAYLALG--------KYEEAIEAYKKALELD-PDN 182 (304)
T ss_pred HHHHHHccC--------cHHHHHHHHHhhhccC-CCc
Confidence 889999999 8999999997776666 776
No 88
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.76 E-value=0.0024 Score=79.41 Aligned_cols=87 Identities=21% Similarity=0.185 Sum_probs=71.3
Q ss_pred HHHHHH-hcCHHHHHHHHHHHHHhCCCchhHHHHHHHH-hhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHc
Q 000323 1267 IWCMAV-LNGLECSMNLLEKYIKLYPSCLELVLMKARL-QKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQN 1344 (1669)
Q Consensus 1267 IR~lI~-LEDse~A~~LfdklLk~~P~d~eL~L~AAyL-~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~ 1344 (1669)
+.|... .++.++|+++.+++++.-|+.+++-+.-+++ ...+...+|...++.|..+++.+-- +=...+.+.++.
T Consensus 200 lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRy----iNsK~aKy~LRa 275 (517)
T PF12569_consen 200 LAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRY----INSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHH----HHHHHHHHHHHC
Confidence 444444 7799999999999999999999994444454 4444478999999999999999887 555568999999
Q ss_pred CChHHHHHHHHHH
Q 000323 1345 GRHDFAAELMDRW 1357 (1669)
Q Consensus 1345 en~d~Ai~Lc~~f 1357 (1669)
|.+++|..++..|
T Consensus 276 ~~~e~A~~~~~~F 288 (517)
T PF12569_consen 276 GRIEEAEKTASLF 288 (517)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999653
No 89
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.76 E-value=0.00035 Score=89.21 Aligned_cols=115 Identities=10% Similarity=-0.034 Sum_probs=105.3
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhh
Q 000323 1027 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDA 1102 (1669)
Q Consensus 1027 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~ 1102 (1669)
.-|.|+.|..+|.+|++..|+.+.++..++.+..+.+.-+++..-+++|++.+|+|.. ++......+ .
T Consensus 98 ~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g--------~ 169 (694)
T PRK15179 98 AAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIG--------Q 169 (694)
T ss_pred HcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhc--------c
Confidence 3577899999999999999999999999999999999999999999999999999999 666677777 9
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1103 YDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1103 YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
|++|+.+|+++.+.+ ++. .+.++.+.+++...|+.+.|...+.+-..
T Consensus 170 ~~~A~~~y~~~~~~~-p~~-------~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 170 SEQADACFERLSRQH-PEF-------ENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred hHHHHHHHHHHHhcC-CCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999977 666 89999999999999999999997776665
No 90
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.73 E-value=0.00024 Score=85.41 Aligned_cols=109 Identities=18% Similarity=0.330 Sum_probs=96.3
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHH----HHHHHhcCCCcccchhhHH
Q 000323 1029 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYAL----WLMYINSRTPLNHRLDAYD 1104 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~L----wlmYInsr~slddrl~~Yd 1104 (1669)
++++.|+++|.+..+.+|+ +++.++.+|...++..++...+.+|++.+|.++.| +.++++.+ .|+
T Consensus 183 ~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~--------~~~ 251 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK--------KYE 251 (395)
T ss_pred ccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--------CHH
Confidence 4689999999999999975 67778999988888888999999999999999994 45566777 889
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Q 000323 1105 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1156 (1669)
Q Consensus 1105 kAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLE 1156 (1669)
.|+.+..++.... |+. .+.|..|+++|...|++++|+.+||-+=
T Consensus 252 lAL~iAk~av~ls-P~~-------f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 252 LALEIAKKAVELS-PSE-------FETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHhC-chh-------HHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999998 565 8999999999999999999999887654
No 91
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.69 E-value=0.00027 Score=60.72 Aligned_cols=93 Identities=16% Similarity=0.221 Sum_probs=79.1
Q ss_pred HHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHH
Q 000323 1012 QCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWL 1087 (1669)
Q Consensus 1012 lWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----Lwl 1087 (1669)
.|..+|..++.+ |+++.|+.+|.++++.+|.+..+|+.++.+|...+....+.++|+++++..|.+.. ++.
T Consensus 2 ~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 76 (100)
T cd00189 2 ALLNLGNLYYKL-----GDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGL 76 (100)
T ss_pred HHHHHHHHHHHH-----hcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHH
Confidence 467777777664 56799999999999999999999999999999999889999999999999998875 556
Q ss_pred HHHhcCCCcccchhhHHHHHHHHHHhhhcC
Q 000323 1088 MYINSRTPLNHRLDAYDAALSVLCRCASAS 1117 (1669)
Q Consensus 1088 mYInsr~slddrl~~YdkAI~aLe~las~~ 1117 (1669)
+|...+ .+++|+..+.+.....
T Consensus 77 ~~~~~~--------~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 77 AYYKLG--------KYEEALEAYEKALELD 98 (100)
T ss_pred HHHHHH--------hHHHHHHHHHHHHccC
Confidence 777777 7899999987766554
No 92
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.0077 Score=74.60 Aligned_cols=284 Identities=14% Similarity=0.076 Sum_probs=162.2
Q ss_pred hHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----
Q 000323 1009 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---- 1084 (1669)
Q Consensus 1009 d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~---- 1084 (1669)
+.++-.+.|..+.-.- +|..-+.++.-.||+||=...++...+..++..+++.+...+=-+-|+..|.+-.
T Consensus 243 ~~dll~~~ad~~y~~c-----~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~a 317 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGC-----RFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFA 317 (611)
T ss_pred cHHHHHHHHHHHHHcC-----hHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhh
Confidence 3366666666666553 3577777777777777777777776666777777777666666666777776654
Q ss_pred HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCC
Q 000323 1085 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND 1164 (1669)
Q Consensus 1085 LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~s 1164 (1669)
++.+|.-.+ .|.+|+..|-....-. +.= -..|+...+-|.-.|..|+|++.+.+=-+. ..|..
T Consensus 318 Vg~YYl~i~--------k~seARry~SKat~lD-~~f-------gpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~h 380 (611)
T KOG1173|consen 318 VGCYYLMIG--------KYSEARRYFSKATTLD-PTF-------GPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCH 380 (611)
T ss_pred HHHHHHHhc--------CcHHHHHHHHHHhhcC-ccc-------cHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCc
Confidence 667777666 6777777775544433 221 345677777777777777777755432221 12332
Q ss_pred cccchHHHHHHhhccCCcchhhHHHHH-HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhh
Q 000323 1165 RHSLFLSDILTCLTISDKLIFWVCCVY-LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVEL 1243 (1669)
Q Consensus 1165 E~~lSLsKi~~YLt~sDR~~AWL~~iY-llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~ 1243 (1669)
. ...---+ .|-.++. ..|+..| ...|.+-|-+-+.-++.--=+|. ..+-.-|...|..|+.-...
T Consensus 381 l-P~LYlgm-ey~~t~n---~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~---------~~~y~~A~~~f~~~l~~ik~ 446 (611)
T KOG1173|consen 381 L-PSLYLGM-EYMRTNN---LKLAEKFFKQALAIAPSDPLVLHELGVVAYT---------YEEYPEALKYFQKALEVIKS 446 (611)
T ss_pred c-hHHHHHH-HHHHhcc---HHHHHHHHHHHHhcCCCcchhhhhhhheeeh---------HhhhHHHHHHHHHHHHHhhh
Confidence 2 1111111 1211111 2345554 44444444333333332111111 12223344444443211111
Q ss_pred hcCCcchhhhhhhchhhHhHH--HHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHH
Q 000323 1244 YSNGESLEKETNLRSAHCFAV--NHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEA 1319 (1669)
Q Consensus 1244 ~~ndesla~~~~~kt~~~fKL--N~IR~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~A 1319 (1669)
.+ +++. -.-|+ |+.-.+--++..++|+..|+++|.++|.++.. .+..-|..+++ .+.|+.-|.+|
T Consensus 447 -~~--------~e~~-~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgn-ld~Aid~fhKa 515 (611)
T KOG1173|consen 447 -VL--------NEKI-FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGN-LDKAIDHFHKA 515 (611)
T ss_pred -cc--------cccc-chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC-hHHHHHHHHHH
Confidence 11 1122 34444 32222222668899999999999999999999 55555545554 99999999999
Q ss_pred HHhCCCCCchHHHHHHHHHHHHHHc
Q 000323 1320 LIKWPKGVPGIQCIWNQYVEYALQN 1344 (1669)
Q Consensus 1320 L~~~PkNa~g~~caW~QLIq~al~~ 1344 (1669)
|.+.|+|.- + -+++..+++.
T Consensus 516 L~l~p~n~~----~-~~lL~~aie~ 535 (611)
T KOG1173|consen 516 LALKPDNIF----I-SELLKLAIED 535 (611)
T ss_pred HhcCCccHH----H-HHHHHHHHHh
Confidence 999999977 3 2455555544
No 93
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.67 E-value=0.0001 Score=65.44 Aligned_cols=63 Identities=16% Similarity=0.272 Sum_probs=55.0
Q ss_pred HHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCC
Q 000323 1015 EMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1082 (1669)
Q Consensus 1015 elAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~N 1082 (1669)
.+|..++.. |+|+.|..+|..+++.+|.++.+|+.++.++..++...++..+|++|++.+|+|
T Consensus 2 ~~a~~~~~~-----g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQ-----GDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHC-----THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHc-----CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 345555554 678999999999999999999999999999999999999999999999999986
No 94
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.67 E-value=0.0065 Score=75.99 Aligned_cols=110 Identities=20% Similarity=0.385 Sum_probs=75.5
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccch----hhHHHHHHHHHHh
Q 000323 1038 LSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRL----DAYDAALSVLCRC 1113 (1669)
Q Consensus 1038 LsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl----~~YdkAI~aLe~l 1113 (1669)
|..=|--||.+.-.|..|...-.+. ......-.||+|.+.=|.+|-||.-||+.|+.---.+ -+|+.--..||+.
T Consensus 16 fEeEilRnp~svk~W~RYIe~k~~s-p~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~ 94 (835)
T KOG2047|consen 16 FEEEILRNPFSVKCWLRYIEHKAGS-PDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERC 94 (835)
T ss_pred hHHHHHcCchhHHHHHHHHHHHccC-ChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHH
Confidence 3444556899999999998885442 2445678899999999999999999997663222111 2333333334333
Q ss_pred hhc-CCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1114 ASA-SDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1114 as~-~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
.-- ++-+ -||+.-+++...+|++-.-..+++|-+.
T Consensus 95 lv~mHkmp---------RIwl~Ylq~l~~Q~~iT~tR~tfdrALr 130 (835)
T KOG2047|consen 95 LVFMHKMP---------RIWLDYLQFLIKQGLITRTRRTFDRALR 130 (835)
T ss_pred HHHHhcCC---------HHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 321 2223 3899999999999999988888887664
No 95
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.67 E-value=0.0013 Score=81.30 Aligned_cols=239 Identities=15% Similarity=0.096 Sum_probs=137.5
Q ss_pred hhhccchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCC
Q 000323 1003 LKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1082 (1669)
Q Consensus 1003 le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~N 1082 (1669)
+++.|.+.+.|..|-.....-+.. ..|...|.+||++||++-++...|+-.|...+-...+..||.+=++..|.-
T Consensus 312 VkqdP~haeAW~~LG~~qaENE~E-----~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y 386 (579)
T KOG1125|consen 312 VKQDPQHAEAWQKLGITQAENENE-----QNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKY 386 (579)
T ss_pred HhhChHHHHHHHHhhhHhhhccch-----HHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccc
Confidence 444456667777665544332222 566677777777777777777777777766666666777777776666654
Q ss_pred HHHHHHHHhcC----CCcccchhhHHHHHHHHHHhhhcCC--CCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Q 000323 1083 YALWLMYINSR----TPLNHRLDAYDAALSVLCRCASASD--GDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1156 (1669)
Q Consensus 1083 Y~LwlmYInsr----~slddrl~~YdkAI~aLe~las~~~--~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLE 1156 (1669)
+++.---.+.. .++.+.. ...+-.+.|-+++...+ .| -||-..|-=||..+|+|++||..+.-.+
T Consensus 387 ~~l~~a~~~~~~~~~~s~~~~~-~l~~i~~~fLeaa~~~~~~~D--------pdvQ~~LGVLy~ls~efdraiDcf~~AL 457 (579)
T KOG1125|consen 387 VHLVSAGENEDFENTKSFLDSS-HLAHIQELFLEAARQLPTKID--------PDVQSGLGVLYNLSGEFDRAVDCFEAAL 457 (579)
T ss_pred hhccccCccccccCCcCCCCHH-HHHHHHHHHHHHHHhCCCCCC--------hhHHhhhHHHHhcchHHHHHHHHHHHHH
Confidence 43321111111 1223222 44555555555555552 23 4555666666666677777666333322
Q ss_pred ccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHH
Q 000323 1157 IPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEM 1236 (1669)
Q Consensus 1157 q~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~sm 1236 (1669)
+ ..| ++...==.+
T Consensus 458 ~-----v~P--------------------------------------------------------------nd~~lWNRL 470 (579)
T KOG1125|consen 458 Q-----VKP--------------------------------------------------------------NDYLLWNRL 470 (579)
T ss_pred h-----cCC--------------------------------------------------------------chHHHHHHh
Confidence 2 222 221111111
Q ss_pred HHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccH
Q 000323 1237 AVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAV-LNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSS 1313 (1669)
Q Consensus 1237 A~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~-LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~ 1313 (1669)
+ .- .+ -+.+++|++.|.++|++.|.-+-. -|.-++|.... -++|+
T Consensus 471 G------------------------------At-LAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~-ykEA~ 518 (579)
T KOG1125|consen 471 G------------------------------AT-LANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA-YKEAV 518 (579)
T ss_pred h------------------------------HH-hcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh-HHHHH
Confidence 1 11 12 238899999999999999999988 77777877664 77999
Q ss_pred HHHHHHHHhCCCCCc----h--HHHHHHHHHHHHHHcCChHHHHHHH
Q 000323 1314 VGFEEALIKWPKGVP----G--IQCIWNQYVEYALQNGRHDFAAELM 1354 (1669)
Q Consensus 1314 svle~AL~~~PkNa~----g--~~caW~QLIq~al~~en~d~Ai~Lc 1354 (1669)
.-|..||.+.+++.. . ---+|..|=...+.-++.|.+.+.+
T Consensus 519 ~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 519 KHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 999999999998332 1 1236644433334445555455554
No 96
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.65 E-value=0.00029 Score=80.56 Aligned_cols=120 Identities=18% Similarity=0.262 Sum_probs=99.3
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCch-HHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHH
Q 000323 1029 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVG-KDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAAL 1107 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~ee-a~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI 1107 (1669)
++.++|..+|.+|++-.+....+|..+|.+.+...++.. |...||.|++.-|.+..+|+.|++....++ ..+.|+
T Consensus 15 ~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~----d~~~aR 90 (280)
T PF05843_consen 15 EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLN----DINNAR 90 (280)
T ss_dssp HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-----HHHHH
T ss_pred CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhC----cHHHHH
Confidence 457999999999998888899999999999888666666 999999999999999999999999886665 458999
Q ss_pred HHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1108 SVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1108 ~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
.+||+..+.. +.. .....+|-..++++..-|+++.+.....|+.+
T Consensus 91 ~lfer~i~~l-~~~----~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 91 ALFERAISSL-PKE----KQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHHHCCTS-SCH----HHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-Cch----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999887 342 01467999999999999999999887777765
No 97
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00039 Score=80.54 Aligned_cols=107 Identities=11% Similarity=0.065 Sum_probs=94.3
Q ss_pred hhhhhccchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC---CchHHHHHHHHHh
Q 000323 1001 NKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN---SVGKDDMFSYSVK 1077 (1669)
Q Consensus 1001 ~~le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~---~eea~emlekAVe 1077 (1669)
.+|-+.|.|.+.|+.|+.-|+..+. ++.|+..|.+|+++.|+++++|--|+..++...+ ..++.++|.+|++
T Consensus 147 ~~L~~nP~d~egW~~Lg~~ym~~~~-----~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 147 THLQQNPGDAEGWDLLGRAYMALGR-----ASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred HHHHhCCCCchhHHHHHHHHHHhcc-----hhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 4778889999999999999999965 5999999999999999999999999888775554 4458999999999
Q ss_pred hCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCC
Q 000323 1078 HNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD 1120 (1669)
Q Consensus 1078 lnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~D 1120 (1669)
++|.|.. |+.-|..++ .|.+|+...+.|.+..+++
T Consensus 222 ~D~~~iral~lLA~~afe~g--------~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 222 LDPANIRALSLLAFAAFEQG--------DYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred cCCccHHHHHHHHHHHHHcc--------cHHHHHHHHHHHHhcCCCC
Confidence 9999988 777788888 9999999999999988555
No 98
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.61 E-value=0.034 Score=69.59 Aligned_cols=86 Identities=21% Similarity=0.378 Sum_probs=68.3
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhCCCCHH---HHHHHHhcCCCcccchhh
Q 000323 1027 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN-SVGKDDMFSYSVKHNEGSYA---LWLMYINSRTPLNHRLDA 1102 (1669)
Q Consensus 1027 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~-~eea~emlekAVelnP~NY~---LwlmYInsr~slddrl~~ 1102 (1669)
+.|..+.+..+|.+|+..-|.+..+|..|...-..... ++.+++.|++|+.++--.|. ||.+||..... .. .
T Consensus 91 klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~-qk---s 166 (577)
T KOG1258|consen 91 KLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENG-QK---S 166 (577)
T ss_pred HhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhc-cc---c
Confidence 46778999999999999999999999999888765444 44599999999999987777 99999987621 11 4
Q ss_pred HHHHHHHHHHhhhc
Q 000323 1103 YDAALSVLCRCASA 1116 (1669)
Q Consensus 1103 YdkAI~aLe~las~ 1116 (1669)
+.+-..+|++..+.
T Consensus 167 ~k~v~~iyeRilei 180 (577)
T KOG1258|consen 167 WKRVANIYERILEI 180 (577)
T ss_pred HHHHHHHHHHHHhh
Confidence 56667777666553
No 99
>PLN02789 farnesyltranstransferase
Probab=97.56 E-value=0.0064 Score=71.54 Aligned_cols=247 Identities=12% Similarity=0.093 Sum_probs=140.3
Q ss_pred HHHHHHHHH-hcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhccc--CCccHHHHHHHHHhCCCCCchHHHHHHHHHHH
Q 000323 1264 VNHIWCMAV-LNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDF--GDLSSVGFEEALIKWPKGVPGIQCIWNQYVEY 1340 (1669)
Q Consensus 1264 LN~IR~lI~-LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m--~~~A~svle~AL~~~PkNa~g~~caW~QLIq~ 1340 (1669)
+.++|-++. .+.++.|+.+++++++.+|.+.++|.+-..+..+-+ ..+++..+++|+..+|+|.+ +|+--...
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq----aW~~R~~~ 115 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ----IWHHRRWL 115 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH----HhHHHHHH
Confidence 345666655 789999999999999999999999766555433322 46899999999999999999 66432222
Q ss_pred HHHcCC--hHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhh
Q 000323 1341 ALQNGR--HDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQ 1418 (1669)
Q Consensus 1341 al~~en--~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lq 1418 (1669)
....+. ++.++.++.+ ++. + .+.-| ..+...|-++.. .
T Consensus 116 l~~l~~~~~~~el~~~~k-----------------al~-----~--------dpkNy--------~AW~~R~w~l~~--l 155 (320)
T PLN02789 116 AEKLGPDAANKELEFTRK-----------------ILS-----L--------DAKNY--------HAWSHRQWVLRT--L 155 (320)
T ss_pred HHHcCchhhHHHHHHHHH-----------------HHH-----h--------CcccH--------HHHHHHHHHHHH--h
Confidence 222222 1333333321 111 1 01212 234677778888 7
Q ss_pred cCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCc-----ccchhhhHHHHHHHHhh--hc-----ccccccc
Q 000323 1419 NDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKE-----GAPISWQLKLLNSYLDR--AR-----SLPYLKL 1486 (1669)
Q Consensus 1419 g~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~K-----AeqMS~~~KtVsTYLDT--AW-----ILf~~~~ 1486 (1669)
|++++|.+.|+++|+.+|.| ..+|+.-. |+......+.+ .+++.+..+.|..--+- || +|...+.
T Consensus 156 ~~~~eeL~~~~~~I~~d~~N--~sAW~~R~-~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~ 232 (320)
T PLN02789 156 GGWEDELEYCHQLLEEDVRN--NSAWNQRY-FVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKE 232 (320)
T ss_pred hhHHHHHHHHHHHHHHCCCc--hhHHHHHH-HHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCc
Confidence 88999999999999999999 89998765 44332211211 23344443444222121 44 2222100
Q ss_pred cchhhhccccchhhHHHHhhhcCCCCCChhhHHHHHhhccCCCCcccccccccchhHHHHHHHhhcCcchhhHHHHHHHh
Q 000323 1487 LPRQFINNIERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLL 1566 (1669)
Q Consensus 1487 lARiYI~~i~k~rv~~liDqaL~~~S~dss~~nkALE~W~g~slLpqKI~~kKyi~dfVE~ime~~P~Ny~Lal~v~kll 1566 (1669)
+ . ++.+.+..+.++++......+--++-.+..+.. .........+-|+++ ...++....|+.+|.+|
T Consensus 233 -~--l---~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~------~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 233 -A--L---VSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE------GLQPTAEFRDTVDTL-AEELSDSTLAQAVCSEL 299 (320)
T ss_pred -c--c---ccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh------hhccchhhhhhhhcc-ccccccHHHHHHHHHHH
Confidence 0 0 122334444555555321111122222222211 011112244555555 66677889999999999
Q ss_pred hccCC
Q 000323 1567 NKDHN 1571 (1669)
Q Consensus 1567 ~k~~~ 1571 (1669)
.+++
T Consensus 300 -~~~d 303 (320)
T PLN02789 300 -EVAD 303 (320)
T ss_pred -HhhC
Confidence 5777
No 100
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.49 E-value=0.00021 Score=63.50 Aligned_cols=63 Identities=11% Similarity=0.186 Sum_probs=56.9
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHH
Q 000323 1028 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYI 1090 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYI 1090 (1669)
.|+++.|+.+|.++++.+|++.++++.|+.+|+..+...++.++|+++++.+|++-.+|.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 478999999999999999999999999999999999999999999999999999766665543
No 101
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.48 E-value=0.011 Score=73.52 Aligned_cols=262 Identities=15% Similarity=0.073 Sum_probs=158.1
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHH
Q 000323 1011 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYI 1090 (1669)
Q Consensus 1011 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYI 1090 (1669)
+....+|-.|..+ |+|+.|..++.+||++ +-...+- +++.-|-.++ +++.+|.
T Consensus 200 ~~~~~La~~y~~~-----g~~e~A~~l~k~Al~~-------------l~k~~G~-----~hl~va~~l~----~~a~~y~ 252 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQ-----GRLEKAEPLCKQALRI-------------LEKTSGL-----KHLVVASMLN----ILALVYR 252 (508)
T ss_pred HHHHHHHHHHHHh-----ccHHHHHHHHHHHHHH-------------HHHccCc-----cCHHHHHHHH----HHHHHHH
Confidence 5555555555555 4468888888888877 1111111 1111111111 6889999
Q ss_pred hcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchH
Q 000323 1091 NSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFL 1170 (1669)
Q Consensus 1091 nsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSL 1170 (1669)
++. ++.+.+..|.+|++++++..... ....--++.-|..+|+.+|+++.|-..+.+-.. .-+
T Consensus 253 ~~~-k~~eAv~ly~~AL~i~e~~~G~~-------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~-----I~~----- 314 (508)
T KOG1840|consen 253 SLG-KYDEAVNLYEEALTIREEVFGED-------HPAVAATLNNLAVLYYKQGKFAEAEEYCERALE-----IYE----- 314 (508)
T ss_pred Hhc-cHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH-----HHH-----
Confidence 999 55555555555666555544433 233466788899999999999999885554442 100
Q ss_pred HHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcch
Q 000323 1171 SDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESL 1250 (1669)
Q Consensus 1171 sKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesl 1250 (1669)
+ ++.+...+=.+-|+. .+.++...+...++..+ +.-|+..|....+...
T Consensus 315 -~--~~~~~~~~v~~~l~~---------~~~~~~~~~~~Eea~~l------------------~q~al~i~~~~~g~~~- 363 (508)
T KOG1840|consen 315 -K--LLGASHPEVAAQLSE---------LAAILQSMNEYEEAKKL------------------LQKALKIYLDAPGEDN- 363 (508)
T ss_pred -H--hhccChHHHHHHHHH---------HHHHHHHhcchhHHHHH------------------HHHHHHHHHhhccccc-
Confidence 0 122222221112222 23344444444444443 3333333332122111
Q ss_pred hhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CC-chhH-HHHHHHHhhcccCCccHHHHHHHH
Q 000323 1251 EKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLY--------PS-CLEL-VLMKARLQKHDFGDLSSVGFEEAL 1320 (1669)
Q Consensus 1251 a~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~--------P~-d~eL-~L~AAyL~~K~m~~~A~svle~AL 1320 (1669)
-....++-|+-+.|...+..++|.++|.++++.- +. ...| .|..+|.+.++ ...|...|++++
T Consensus 364 ------~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~-~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 364 ------VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKK-YEEAEQLFEEAK 436 (508)
T ss_pred ------hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence 1334566677777777889999999999999865 22 3445 88889988887 888999999999
Q ss_pred HhCCCCCc----hHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000323 1321 IKWPKGVP----GIQCIWNQYVEYALQNGRHDFAAELMDR 1356 (1669)
Q Consensus 1321 ~~~PkNa~----g~~caW~QLIq~al~~en~d~Ai~Lc~~ 1356 (1669)
.+- +... .......-|+...-+.|+++.|++|...
T Consensus 437 ~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~ 475 (508)
T KOG1840|consen 437 DIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEK 475 (508)
T ss_pred HHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 887 3322 4566666788888899999999999876
No 102
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00085 Score=77.79 Aligned_cols=115 Identities=11% Similarity=0.096 Sum_probs=98.8
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHH------HHHhcCCCcccchh
Q 000323 1028 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWL------MYINSRTPLNHRLD 1101 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~Lwl------mYInsr~slddrl~ 1101 (1669)
....+....-|+.-|..||++++=|..|+.+|+..+.-..+...|.+|+++.|+|-.++. ||.... +
T Consensus 135 ~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~-~------ 207 (287)
T COG4235 135 EQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQ-Q------ 207 (287)
T ss_pred cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC-c------
Confidence 344678888899999999999999999999999999999999999999999999999544 444432 1
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1102 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1102 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
+-.+|..+|.++.+.. ++. ...+.+|.--+.++|+|..|+.++..|+.
T Consensus 208 ~ta~a~~ll~~al~~D-~~~-------iral~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 208 MTAKARALLRQALALD-PAN-------IRALSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred ccHHHHHHHHHHHhcC-Ccc-------HHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 3378888998888877 565 88999999999999999999999999997
No 103
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.47 E-value=0.001 Score=75.20 Aligned_cols=134 Identities=14% Similarity=0.068 Sum_probs=116.7
Q ss_pred hhhhccchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCC
Q 000323 1002 KLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG 1081 (1669)
Q Consensus 1002 ~le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~ 1081 (1669)
-|+..|.....|+-+|.-|-...++ +.|...|.+||.++|++..|+-.|.-+.+.++..+++..+|++|++ +|.
T Consensus 61 AL~~DPs~~~a~~~~A~~Yq~~Ge~-----~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~ 134 (250)
T COG3063 61 ALEHDPSYYLAHLVRAHYYQKLGEN-----DLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPA 134 (250)
T ss_pred HHHhCcccHHHHHHHHHHHHHcCCh-----hhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCC
Confidence 6778888999999999999998877 9999999999999999999999999999999999999999999964 443
Q ss_pred CHH-------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHh
Q 000323 1082 SYA-------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISR 1154 (1669)
Q Consensus 1082 NY~-------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~r 1154 (1669)
-+. +.+.-++.+ ..+.|...|.+..... ++. .-.++.|.++....|+|-.|...+++
T Consensus 135 Y~~~s~t~eN~G~Cal~~g--------q~~~A~~~l~raL~~d-p~~-------~~~~l~~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 135 YGEPSDTLENLGLCALKAG--------QFDQAEEYLKRALELD-PQF-------PPALLELARLHYKAGDYAPARLYLER 198 (250)
T ss_pred CCCcchhhhhhHHHHhhcC--------CchhHHHHHHHHHHhC-cCC-------ChHHHHHHHHHHhcccchHHHHHHHH
Confidence 333 667777776 5688888888777766 676 78899999999999999999999988
Q ss_pred hcc
Q 000323 1155 LLI 1157 (1669)
Q Consensus 1155 LEq 1157 (1669)
..+
T Consensus 199 ~~~ 201 (250)
T COG3063 199 YQQ 201 (250)
T ss_pred HHh
Confidence 886
No 104
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.45 E-value=0.0016 Score=66.89 Aligned_cols=117 Identities=25% Similarity=0.204 Sum_probs=88.6
Q ss_pred hcCHHHHHHHHHHHHHhCCCch--hH-HH--HHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCCh
Q 000323 1273 LNGLECSMNLLEKYIKLYPSCL--EL-VL--MKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRH 1347 (1669)
Q Consensus 1273 LEDse~A~~LfdklLk~~P~d~--eL-~L--~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~ 1347 (1669)
.++...+..+++.+++.+|... .+ .| ...++..++ .++|...|+.++...|+. .+..-+++.|....+..|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~-~~~A~~~l~~~~~~~~d~-~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGD-YDEAKAALEKALANAPDP-ELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhhCCCH-HHHHHHHHHHHHHHHHcCCH
Confidence 4588999999999999999992 22 33 334444444 889999999999998666 44555788899999999999
Q ss_pred HHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHH
Q 000323 1348 DFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLA 1427 (1669)
Q Consensus 1348 d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaA 1427 (1669)
++|+.++.. .. +..+.+. +..++||+|.. +|++++|..+
T Consensus 102 d~Al~~L~~------------------~~----------~~~~~~~-----------~~~~~Gdi~~~--~g~~~~A~~~ 140 (145)
T PF09976_consen 102 DEALATLQQ------------------IP----------DEAFKAL-----------AAELLGDIYLA--QGDYDEARAA 140 (145)
T ss_pred HHHHHHHHh------------------cc----------CcchHHH-----------HHHHHHHHHHH--CCCHHHHHHH
Confidence 998888733 00 0011122 23789999999 9999999999
Q ss_pred HHHHH
Q 000323 1428 IDAAL 1432 (1669)
Q Consensus 1428 YDKAL 1432 (1669)
|++||
T Consensus 141 y~~Al 145 (145)
T PF09976_consen 141 YQKAL 145 (145)
T ss_pred HHHhC
Confidence 99996
No 105
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.44 E-value=0.0011 Score=81.89 Aligned_cols=183 Identities=13% Similarity=0.078 Sum_probs=129.9
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhccc-CCccHHHHHHHHHhCCCCCchHHHHHHHHHHH
Q 000323 1262 FAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDF-GDLSSVGFEEALIKWPKGVPGIQCIWNQYVEY 1340 (1669)
Q Consensus 1262 fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m-~~~A~svle~AL~~~PkNa~g~~caW~QLIq~ 1340 (1669)
=|......++..||.-+|+=+|+.+++..|++++.|++.-..+...- -..|+.+|+++|+++|+|.. +-+-|+-.
T Consensus 287 dPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nle----aLmaLAVS 362 (579)
T KOG1125|consen 287 DPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLE----ALMALAVS 362 (579)
T ss_pred ChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHH----HHHHHHHH
Confidence 34443344456888888988999999999999999998888766653 45788999999999999999 76667777
Q ss_pred HHHcCChHHHHHHHHHHHHhhhhccc-ccccchhhhcccCCCCCC---------------CCCCCCCcccccccccchhh
Q 000323 1341 ALQNGRHDFAAELMDRWFHSVWKVQY-SQVEISDPLVADMSHSSP---------------ESTSTSDPEFSVSNRNQMDV 1404 (1669)
Q Consensus 1341 al~~en~d~Ai~Lc~~ff~gia~~Q~-~~deALDaLrkgns~i~~---------------es~s~~vSDfy~~~~~Q~d~ 1404 (1669)
...++.-..|...+..|...-+.+.. ....--+.+..+.+.... +....+-+|++
T Consensus 363 ytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ--------- 433 (579)
T KOG1125|consen 363 YTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQ--------- 433 (579)
T ss_pred HhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHH---------
Confidence 88888888999999999877655544 111000000000000000 00112456655
Q ss_pred HHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhh
Q 000323 1405 MFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISW 1466 (1669)
Q Consensus 1405 ~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~ 1466 (1669)
.-||.+||- .|.+++|...|+.||.-+|.+ .-.||.+-.-|.--. ..+|.+++
T Consensus 434 --~~LGVLy~l--s~efdraiDcf~~AL~v~Pnd--~~lWNRLGAtLAN~~---~s~EAIsA 486 (579)
T KOG1125|consen 434 --SGLGVLYNL--SGEFDRAVDCFEAALQVKPND--YLLWNRLGATLANGN---RSEEAISA 486 (579)
T ss_pred --hhhHHHHhc--chHHHHHHHHHHHHHhcCCch--HHHHHHhhHHhcCCc---ccHHHHHH
Confidence 566777776 999999999999999999999 999999998877533 23444555
No 106
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.43 E-value=0.0012 Score=62.89 Aligned_cols=96 Identities=18% Similarity=0.121 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCH---
Q 000323 1010 NEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS---EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY--- 1083 (1669)
Q Consensus 1010 ~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtS---aeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY--- 1083 (1669)
.+.++..|..++.+ |+++.|...|..+++.+|++ +.+++.++.+|...+...++.++|+.+++..|++.
T Consensus 2 ~~~~~~~~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 76 (119)
T TIGR02795 2 EEAYYDAALLVLKA-----GDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAP 76 (119)
T ss_pred cHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCccc
Confidence 35677788888776 45799999999999999987 68999999999999999999999999999998852
Q ss_pred ----HHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCC
Q 000323 1084 ----ALWLMYINSRTPLNHRLDAYDAALSVLCRCASASD 1118 (1669)
Q Consensus 1084 ----~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~ 1118 (1669)
.++.+|...+ .+++|+..|.++...+|
T Consensus 77 ~~~~~~~~~~~~~~--------~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 77 DALLKLGMSLQELG--------DKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHHHHHHHhC--------ChHHHHHHHHHHHHHCc
Confidence 1677888877 88999999999999884
No 107
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.42 E-value=0.0013 Score=56.47 Aligned_cols=91 Identities=12% Similarity=0.173 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhh
Q 000323 1051 LWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASA 1126 (1669)
Q Consensus 1051 aWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa 1126 (1669)
+|+.++.+|...+...++...|+++++..|.+.. ++.+|...+ .+++|+..|.+..... +..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~a~~~~~~~~~~~-~~~----- 67 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLG--------KYEEALEDYEKALELD-PDN----- 67 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhCC-Ccc-----
Confidence 6888999999999999999999999999998744 667777776 8899999998888877 443
Q ss_pred hhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1127 CILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1127 ~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
.+++..+..++...|++++|+..+.+...
T Consensus 68 --~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 68 --AKAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred --hhHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 48899999999999999999997776653
No 108
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0031 Score=75.81 Aligned_cols=291 Identities=15% Similarity=0.097 Sum_probs=191.2
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHH
Q 000323 1026 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDA 1105 (1669)
Q Consensus 1026 n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~Ydk 1105 (1669)
.+...|..||..|..|++..|.+++.|.--+..|+..+.-+++.--.++.|++.|+-.+ -..++..|-.
T Consensus 60 yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k-----------~~~r~~~c~~ 128 (486)
T KOG0550|consen 60 YKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSK-----------GQLREGQCHL 128 (486)
T ss_pred HHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccc-----------cccchhhhhh
Confidence 34567999999999999999999999999999988888777777777888888876554 1223446666
Q ss_pred HHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchh
Q 000323 1106 ALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIF 1185 (1669)
Q Consensus 1106 AI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~A 1185 (1669)
|+..+....... .+. +.+..-+|+.++.++-+ . .+. ..
T Consensus 129 a~~~~i~A~~~~-~~~-------------------~~~~~anal~~~~~~~~--s--~s~--------------~p---- 166 (486)
T KOG0550|consen 129 ALSDLIEAEEKL-KSK-------------------QAYKAANALPTLEKLAP--S--HSR--------------EP---- 166 (486)
T ss_pred hhHHHHHHHHHh-hhh-------------------hhhHHhhhhhhhhcccc--c--ccC--------------Cc----
Confidence 666665544433 221 11123334443333332 1 111 01
Q ss_pred hHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHH
Q 000323 1186 WVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVN 1265 (1669)
Q Consensus 1186 WL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN 1265 (1669)
-...|+.|-...|+..+...+|..+ ...+++.++.++.++.--
T Consensus 167 -----ac~~a~~lka~cl~~~~~~~~a~~e---a~~ilkld~~n~~al~vr----------------------------- 209 (486)
T KOG0550|consen 167 -----ACFKAKLLKAECLAFLGDYDEAQSE---AIDILKLDATNAEALYVR----------------------------- 209 (486)
T ss_pred -----hhhHHHHhhhhhhhhcccchhHHHH---HHHHHhcccchhHHHHhc-----------------------------
Confidence 1233455566677788888888888 888899999999888532
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCchhH---HHHHHHHhh----------cccCCccHHHHHHHHHhCCCCCc-hHH
Q 000323 1266 HIWCMAVLNGLECSMNLLEKYIKLYPSCLEL---VLMKARLQK----------HDFGDLSSVGFEEALIKWPKGVP-GIQ 1331 (1669)
Q Consensus 1266 ~IR~lI~LEDse~A~~LfdklLk~~P~d~eL---~L~AAyL~~----------K~m~~~A~svle~AL~~~PkNa~-g~~ 1331 (1669)
.+++.-+.+.+.++.-|.+.|.+.|.+-+. .+..-.|+. ++.-.+|-..|.+||.++|+|.. ...
T Consensus 210 -g~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak 288 (486)
T KOG0550|consen 210 -GLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK 288 (486)
T ss_pred -ccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence 223333335666677777777777777666 111111211 11133566889999999999998 666
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHH
Q 000323 1332 CIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNL 1411 (1669)
Q Consensus 1332 caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD 1411 (1669)
|-|++-.- -++-++..+|+.-|.. |+. + .+-| +-++|--
T Consensus 289 lY~nra~v-~~rLgrl~eaisdc~~--------------Al~--------i---------D~sy---------ikall~r 327 (486)
T KOG0550|consen 289 LYGNRALV-NIRLGRLREAISDCNE--------------ALK--------I---------DSSY---------IKALLRR 327 (486)
T ss_pred HHHHhHhh-hcccCCchhhhhhhhh--------------hhh--------c---------CHHH---------HHHHHHH
Confidence 66665443 4567788888888854 221 1 1112 1277777
Q ss_pred HHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHH
Q 000323 1412 SLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHA 1448 (1669)
Q Consensus 1412 ~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYA 1448 (1669)
+.+.++.++++||..-|++|++..-+-.....|++=.
T Consensus 328 a~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~ 364 (486)
T KOG0550|consen 328 ANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQ 364 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence 7888889999999999999999888754577777644
No 109
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.34 E-value=0.0066 Score=75.44 Aligned_cols=244 Identities=20% Similarity=0.111 Sum_probs=133.8
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHH-HHHhhc-cchHHHhh
Q 000323 1128 ILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY-LVIYRK-LPDAVLQL 1205 (1669)
Q Consensus 1128 iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iY-llrYrv-LPGd~y~q 1205 (1669)
.+-++..++..|..+|+|++|+. +...|+.- -|..|- ..| +++=.. -.|.+|+.
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~----l~k~Al~~-------------------l~k~~G-~~hl~va~~l~~~a~~y~~ 253 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEP----LCKQALRI-------------------LEKTSG-LKHLVVASMLNILALVYRS 253 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHH----HHHHHHHH-------------------HHHccC-ccCHHHHHHHHHHHHHHHH
Confidence 38888889999999999999998 44322211 000111 111 111111 25666777
Q ss_pred hhhhhhhhccCCCCcccc--------hhhHHHHHHHHHHHHHHHhhhcCCcchhhhh-------hhc----hhhHhHHHH
Q 000323 1206 LECEKELFAIDWPPVQLE--------DDEKQRAIKLIEMAVNSVELYSNGESLEKET-------NLR----SAHCFAVNH 1266 (1669)
Q Consensus 1206 ~e~~KEAf~I~W~y~~vl--------k~EPdnalAL~smA~dYY~~~~ndesla~~~-------~~k----t~~~fKLN~ 1266 (1669)
.++.+||..+ |...+ ++.|.-+..+.++|+-||+. |+-.-+... .++ .....+..+
T Consensus 254 ~~k~~eAv~l---y~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~--GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l 328 (508)
T KOG1840|consen 254 LGKYDEAVNL---YEEALTIREEVFGEDHPAVAATLNNLAVLYYKQ--GKFAEAEEYCERALEIYEKLLGASHPEVAAQL 328 (508)
T ss_pred hccHHHHHHH---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc--CChHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 7777666666 55554 45889999999999888874 433322222 000 111111111
Q ss_pred ---HHHHHHhcCHHHHHHHHHHHHHhCC---Cchh--H-----HHHHHHHhhcccCCccHHHHHHHHHhC----CCCCch
Q 000323 1267 ---IWCMAVLNGLECSMNLLEKYIKLYP---SCLE--L-----VLMKARLQKHDFGDLSSVGFEEALIKW----PKGVPG 1329 (1669)
Q Consensus 1267 ---IR~lI~LEDse~A~~LfdklLk~~P---~d~e--L-----~L~AAyL~~K~m~~~A~svle~AL~~~----PkNa~g 1329 (1669)
...+...++.++|..|+.++++.+- .+.+ + -|...|+.+.+ ..+|...|++|+++. =+...+
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk-~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGK-YKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHhcccCcChh
Confidence 1111113366667766666666542 2222 2 33334444443 566666667666665 222223
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHH
Q 000323 1330 IQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYL 1409 (1669)
Q Consensus 1330 ~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~L 1409 (1669)
..-.-+||.....+.+++..|-++..+ +.+++ +.-.+ ..-|++|.|.
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~--------------~~~i~-~~~g~------------------~~~~~~~~~~ 454 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEE--------------AKDIM-KLCGP------------------DHPDVTYTYL 454 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHH--------------HHHHH-HHhCC------------------CCCchHHHHH
Confidence 222233455544555566655555533 44444 22111 1225677899
Q ss_pred HH--HHHHhhhcCHHHHHHHHHHHHhhcc
Q 000323 1410 NL--SLHRLLQNDWNEARLAIDAALKAAA 1436 (1669)
Q Consensus 1410 GD--~L~q~Lqg~~~EAfaAYDKALkanp 1436 (1669)
|+ .|-. +|++++|+..-++++.|..
T Consensus 455 nL~~~Y~~--~g~~e~a~~~~~~~~~~~~ 481 (508)
T KOG1840|consen 455 NLAALYRA--QGNYEAAEELEEKVLNARE 481 (508)
T ss_pred HHHHHHHH--cccHHHHHHHHHHHHHHHH
Confidence 99 4555 9999999999999997765
No 110
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0034 Score=77.52 Aligned_cols=221 Identities=15% Similarity=0.156 Sum_probs=139.3
Q ss_pred cchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH--
Q 000323 1007 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-- 1084 (1669)
Q Consensus 1007 ~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-- 1084 (1669)
|...-.|+..+.-|++-+.+ ..|...|++|-.+||+=..+|..|++.|...++-+.+...|.+|.++=|+.+.
T Consensus 309 P~~a~sW~aVg~YYl~i~k~-----seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~ 383 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIGKY-----SEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS 383 (611)
T ss_pred CCCCcchhhHHHHHHHhcCc-----HHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH
Confidence 34445677777777776443 77777777777777777777777777777777777777777777777777765
Q ss_pred --HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHH-HHhcCHHHHHHHHHhhcccccC
Q 000323 1085 --LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCF-CMSGNTEKAIQRISRLLIPATG 1161 (1669)
Q Consensus 1085 --LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY-~qSGnydKAI~tl~rLEq~Al~ 1161 (1669)
++.-|-... .+..|-.+|.++.+..|.|- +.+--+-+. -..+.|.+|+. +++.++.
T Consensus 384 LYlgmey~~t~--------n~kLAe~Ff~~A~ai~P~Dp---------lv~~Elgvvay~~~~y~~A~~----~f~~~l~ 442 (611)
T KOG1173|consen 384 LYLGMEYMRTN--------NLKLAEKFFKQALAIAPSDP---------LVLHELGVVAYTYEEYPEALK----YFQKALE 442 (611)
T ss_pred HHHHHHHHHhc--------cHHHHHHHHHHHHhcCCCcc---------hhhhhhhheeehHhhhHHHHH----HHHHHHH
Confidence 445555444 56777777777777775453 222222222 23566777776 5543331
Q ss_pred CCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHH
Q 000323 1162 SNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSV 1241 (1669)
Q Consensus 1162 g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY 1241 (1669)
- +. ........|-.- ...+|..|-..++..||+.. +++++...|.++-.+.+.|
T Consensus 443 ~----------ik---~~~~e~~~w~p~------~~NLGH~~Rkl~~~~eAI~~---~q~aL~l~~k~~~~~asig---- 496 (611)
T KOG1173|consen 443 V----------IK---SVLNEKIFWEPT------LNNLGHAYRKLNKYEEAIDY---YQKALLLSPKDASTHASIG---- 496 (611)
T ss_pred H----------hh---hccccccchhHH------HHhHHHHHHHHhhHHHHHHH---HHHHHHcCCCchhHHHHHH----
Confidence 1 00 112222234322 22356666666777777777 6777666666666655532
Q ss_pred hhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhh
Q 000323 1242 ELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQK 1305 (1669)
Q Consensus 1242 ~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~ 1305 (1669)
-++..++.++.|++-|.+.|.+.|.|.-+ .|....|+.
T Consensus 497 --------------------------~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 497 --------------------------YIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred --------------------------HHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 33445778999999999999999999877 555555443
No 111
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.25 E-value=0.001 Score=76.27 Aligned_cols=140 Identities=14% Similarity=0.116 Sum_probs=105.1
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhccc--CCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Q 000323 1265 NHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDF--GDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYAL 1342 (1669)
Q Consensus 1265 N~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m--~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al 1342 (1669)
.+|+++-..++.+.|+.+|.++++..+.+.+|++..|.|+.... +..|+.+||.++..-|++.. .|+.||.+++
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~----~~~~Y~~~l~ 81 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD----FWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH----HHHHHHHHHH
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHH
Confidence 44666555778999999999999877788999999999987743 33489999999999999999 9999999999
Q ss_pred HcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHH--HHHHhhhcC
Q 000323 1343 QNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNL--SLHRLLQND 1420 (1669)
Q Consensus 1343 ~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD--~L~q~Lqg~ 1420 (1669)
..++.+.|..|.++++..++.... + ..||+ +-|+...|+
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~-----------------------------------~----~~iw~~~i~fE~~~Gd 122 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQ-----------------------------------S----KKIWKKFIEFESKYGD 122 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHH-----------------------------------C----HHHHHHHHHHHHHHS-
T ss_pred HhCcHHHHHHHHHHHHHhcCchhH-----------------------------------H----HHHHHHHHHHHHHcCC
Confidence 999999999999773322111110 1 33444 556667899
Q ss_pred HHHHHHHHHHHHhhccC-CcHHHHHHHH
Q 000323 1421 WNEARLAIDAALKAAAS-EHFKHCVREH 1447 (1669)
Q Consensus 1421 ~~EAfaAYDKALkanp~-N~~i~cLNNY 1447 (1669)
++.....++++..+-|. +.+...++.|
T Consensus 123 l~~v~~v~~R~~~~~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 123 LESVRKVEKRAEELFPEDNSLELFSDRY 150 (280)
T ss_dssp HHHHHHHHHHHHHHTTTS-HHHHHHCCT
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence 99999999999999985 5455555555
No 112
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.24 E-value=0.0027 Score=81.40 Aligned_cols=178 Identities=13% Similarity=0.114 Sum_probs=117.5
Q ss_pred CHHHHHHHHHHHHHhCCCchhHHHHHHHH-hhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHH
Q 000323 1275 GLECSMNLLEKYIKLYPSCLELVLMKARL-QKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAEL 1353 (1669)
Q Consensus 1275 Dse~A~~LfdklLk~~P~d~eL~L~AAyL-~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~L 1353 (1669)
-..+++.=+..++.-||.+++.....+++ +..+-.++|...|+.+++..|++.. +|.-++....+.+.+++|...
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~----a~~~~a~~L~~~~~~eeA~~~ 142 (694)
T PRK15179 67 KPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSE----AFILMLRGVKRQQGIEAGRAE 142 (694)
T ss_pred chHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHHhccHHHHHHH
Confidence 34455555566778888888884444443 3333378888888888888888888 888888888888888888888
Q ss_pred HHHHH------------Hhhhhccc-ccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcC
Q 000323 1354 MDRWF------------HSVWKVQY-SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQND 1420 (1669)
Q Consensus 1354 c~~ff------------~gia~~Q~-~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~ 1420 (1669)
+++.+ ++++-.+. +.++|.+++++...+.+ |+ .. ++++.+.--.-.|+
T Consensus 143 ~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p---------~~-----~~-----~~~~~a~~l~~~G~ 203 (694)
T PRK15179 143 IELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHP---------EF-----EN-----GYVGWAQSLTRRGA 203 (694)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCC---------Cc-----HH-----HHHHHHHHHHHcCC
Confidence 88833 33333333 88888888887754421 10 11 55665444333799
Q ss_pred HHHHHHHHHHHHhhccCCcHHHHHHHHHHHHh--------c--CCCCCCcccchhhhHHHHHHHHhh
Q 000323 1421 WNEARLAIDAALKAAASEHFKHCVREHAMLLL--------I--NESEPKEGAPISWQLKLLNSYLDR 1477 (1669)
Q Consensus 1421 ~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS--------~--e~~dL~KAeqMS~~~KtVsTYLDT 1477 (1669)
.++|.++|++|+....+. ..-++||+.=|. + ++.--.+..++-.+.++|--|=|+
T Consensus 204 ~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 204 LWRARDVLQAGLDAIGDG--ARKLTRRLVDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHHHHHHhhCcc--hHHHHHHHHHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 999999999999999987 566666654332 2 333344445555545566555554
No 113
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.19 E-value=0.0026 Score=77.58 Aligned_cols=134 Identities=15% Similarity=0.055 Sum_probs=106.8
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHH
Q 000323 1011 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYI 1090 (1669)
Q Consensus 1011 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYI 1090 (1669)
..|--.|..++-- +.+|.|+..|.-.+...|+|+-.|-....++...++..++.++|++|+.+.|++.+||.+|.
T Consensus 307 aa~YG~A~~~~~~-----~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 307 AAQYGRALQTYLA-----GQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred HHHHHHHHHHHHh-----cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 4555555555544 44699999999999999999999999999999999999999999999999999999666555
Q ss_pred hcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCC
Q 000323 1091 NSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSN 1163 (1669)
Q Consensus 1091 nsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~ 1163 (1669)
+--...+ .+.+||.+|-+..... |+. -+.|.+|.+-|..+|+..+|..... |.-+..|.
T Consensus 382 ~all~~g----~~~eai~~L~~~~~~~-p~d-------p~~w~~LAqay~~~g~~~~a~~A~A--E~~~~~G~ 440 (484)
T COG4783 382 QALLKGG----KPQEAIRILNRYLFND-PED-------PNGWDLLAQAYAELGNRAEALLARA--EGYALAGR 440 (484)
T ss_pred HHHHhcC----ChHHHHHHHHHHhhcC-CCC-------chHHHHHHHHHHHhCchHHHHHHHH--HHHHhCCC
Confidence 4332222 6789999998888888 454 7999999999999999988876443 33335554
No 114
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.19 E-value=0.021 Score=72.88 Aligned_cols=328 Identities=17% Similarity=0.099 Sum_probs=173.2
Q ss_pred cceecCCccccccccccchhhhhhhhhccchH--HHHHHHHHHHhcccc-cc---hhhHHHHHHHHHHHHHhCCCCHHHH
Q 000323 979 RIECIGSWNRQSSFFRSRNGVLNKLKQVELSN--EQCVEMALLILNQDA-NK---LEGMKKALSLLSRALEADPTSEILW 1052 (1669)
Q Consensus 979 ri~~~~~~~~~~rYF~~~~d~i~~le~~~~d~--qlWLelAl~~Lnq~~-n~---~g~ydAALdLLsrALEINPtSaeaW 1052 (1669)
.++-++.+.+-.-|=+.--++. ..+.+-..- ++.+-.|++-..... ++ .....+++..|.+|++.+|+++-+.
T Consensus 403 c~e~l~~~eegldYA~kai~~~-~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~i 481 (799)
T KOG4162|consen 403 CIERLKLVEEGLDYAQKAISLL-GGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVI 481 (799)
T ss_pred HHhchhhhhhHHHHHHHHHHHh-hhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHH
Confidence 4555544444444544222222 333333333 444444444444433 33 3447899999999999999999999
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCc---ch-
Q 000323 1053 ITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDE---MH- 1123 (1669)
Q Consensus 1053 y~yl~lY~~~~~~eea~emlekAVelnP~NY~-----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr---~~- 1123 (1669)
|+++.-|.-+.+-..+.++++.|.++++.... |++..--++ .|..|+.+......-+ +++ ++
T Consensus 482 f~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~k--------r~~~Al~vvd~al~E~-~~N~~l~~~ 552 (799)
T KOG4162|consen 482 FYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQK--------RLKEALDVVDAALEEF-GDNHVLMDG 552 (799)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh--------hhHHHHHHHHHHHHHh-hhhhhhchh
Confidence 99999999888888899999999999877666 555555566 5566666665554444 331 00
Q ss_pred ---h------hhhhHHHHHHHHHHHHHhcCHHHHHHH------HHhhcccccCCCCcccchHHHHHHhhccCCcchh---
Q 000323 1124 ---A------SACILDLFLQMLQCFCMSGNTEKAIQR------ISRLLIPATGSNDRHSLFLSDILTCLTISDKLIF--- 1185 (1669)
Q Consensus 1124 ---~------Sa~iLDILL~LvqLY~qSGnydKAI~t------l~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~A--- 1185 (1669)
. ---.+|....++.|.-...-++.++.. -.++-. +...... .++.++-..-+-....+.+
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~l-a~~q~~~-a~s~sr~ls~l~a~~~~~~~se 630 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHL-ALSQPTD-AISTSRYLSSLVASQLKSAGSE 630 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhccccc-Ccccccc-cchhhHHHHHHHHhhhhhcccc
Confidence 0 013466777777766633333332221 111110 0000111 1111111111111111111
Q ss_pred ---------------hHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcch
Q 000323 1186 ---------------WVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESL 1250 (1669)
Q Consensus 1186 ---------------WL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesl 1250 (1669)
|+.- ..--.+-++.++-.+-.++++.. ..+..+.+|.-+......| ..+.. .++..-
T Consensus 631 ~~Lp~s~~~~~~~~~~~~~---~~lwllaa~~~~~~~~~~~a~~C---L~Ea~~~~~l~~~~~~~~G-~~~~~-~~~~~E 702 (799)
T KOG4162|consen 631 LKLPSSTVLPGPDSLWYLL---QKLWLLAADLFLLSGNDDEARSC---LLEASKIDPLSASVYYLRG-LLLEV-KGQLEE 702 (799)
T ss_pred cccCcccccCCCCchHHHH---HHHHHHHHHHHHhcCCchHHHHH---HHHHHhcchhhHHHHHHhh-HHHHH-HHhhHH
Confidence 2111 11111234445555555555443 3344444555555554433 22222 222221
Q ss_pred hhhhh--------hchhhHhHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCchhHHHHHHHHhhccc-CCccHHHHHHH
Q 000323 1251 EKETN--------LRSAHCFAVNHIWCMAVLN--GLECSMNLLEKYIKLYPSCLELVLMKARLQKHDF-GDLSSVGFEEA 1319 (1669)
Q Consensus 1251 a~~~~--------~kt~~~fKLN~IR~lI~LE--Dse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m-~~~A~svle~A 1319 (1669)
+.+.. ..+...+.+ ..++...| ..-+.+.++.-+++..|.|.+.|.+..-+.++.+ ...|..-|+.|
T Consensus 703 A~~af~~Al~ldP~hv~s~~Al--a~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 703 AKEAFLVALALDPDHVPSMTAL--AELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHHhcCCCCcHHHHHH--HHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 11110 011111111 12222233 4555566999999999999999999999877775 66888999999
Q ss_pred HHhCCCCCc
Q 000323 1320 LIKWPKGVP 1328 (1669)
Q Consensus 1320 L~~~PkNa~ 1328 (1669)
++.++.++-
T Consensus 781 ~qLe~S~PV 789 (799)
T KOG4162|consen 781 LQLEESNPV 789 (799)
T ss_pred HhhccCCCc
Confidence 999998875
No 115
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.18 E-value=0.0036 Score=71.80 Aligned_cols=98 Identities=11% Similarity=0.032 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH
Q 000323 1009 SNEQCVEMALLI-LNQDANKLEGMKKALSLLSRALEADPTS---EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1084 (1669)
Q Consensus 1009 d~qlWLelAl~~-Lnq~~n~~g~ydAALdLLsrALEINPtS---aeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~ 1084 (1669)
+...|...|+.+ +.. ++|+.|+..|...++.+|++ +.+||.++.+|+..+...++...|+++|+..|++.+
T Consensus 141 ~e~~~Y~~A~~l~~~~-----~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~ 215 (263)
T PRK10803 141 DANTDYNAAIALVQDK-----SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK 215 (263)
T ss_pred CHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence 567888888876 444 56799999999999999998 689999999999999999999999999999998755
Q ss_pred -------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCC
Q 000323 1085 -------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD 1120 (1669)
Q Consensus 1085 -------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~D 1120 (1669)
++..|...+ .+++|+.+|++..+.+ |+
T Consensus 216 ~~dAl~klg~~~~~~g--------~~~~A~~~~~~vi~~y-P~ 249 (263)
T PRK10803 216 AADAMFKVGVIMQDKG--------DTAKAKAVYQQVIKKY-PG 249 (263)
T ss_pred hhHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHC-cC
Confidence 556677777 8899999999999999 55
No 116
>PRK11906 transcriptional regulator; Provisional
Probab=97.08 E-value=0.0091 Score=73.09 Aligned_cols=130 Identities=12% Similarity=0.061 Sum_probs=100.1
Q ss_pred HHHHHHHHHHhcccc--cchhhHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHhC----C-C----CchHHHHHHHHH
Q 000323 1011 EQCVEMALLILNQDA--NKLEGMKKALSLLSRAL---EADPTSEILWITYLLIFYSN----T-N----SVGKDDMFSYSV 1076 (1669)
Q Consensus 1011 qlWLelAl~~Lnq~~--n~~g~ydAALdLLsrAL---EINPtSaeaWy~yl~lY~~~----~-~----~eea~emlekAV 1076 (1669)
+.||..++.+--... ...+..++|+.+|.+|+ ++||.-+.+|..++..+..+ . . -.++.+.-++||
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 678776644443332 34567899999999999 99999999988887776644 1 1 234778999999
Q ss_pred hhCCCCHH-HHHH---HHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHH
Q 000323 1077 KHNEGSYA-LWLM---YINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRI 1152 (1669)
Q Consensus 1077 elnP~NY~-Lwlm---YInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl 1152 (1669)
+++|.+-. +|.+ +...+ .++.|+..|+++..-+ |+- -+++++..-+..+.|+.+.|+..+
T Consensus 332 eld~~Da~a~~~~g~~~~~~~--------~~~~a~~~f~rA~~L~-Pn~-------A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 332 DITTVDGKILAIMGLITGLSG--------QAKVSHILFEQAKIHS-TDI-------ASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred hcCCCCHHHHHHHHHHHHhhc--------chhhHHHHHHHHhhcC-Ccc-------HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999888 4433 22333 4689999999888888 565 899999999999999999999988
Q ss_pred Hhhc
Q 000323 1153 SRLL 1156 (1669)
Q Consensus 1153 ~rLE 1156 (1669)
++-+
T Consensus 396 ~~al 399 (458)
T PRK11906 396 DKSL 399 (458)
T ss_pred HHHh
Confidence 8743
No 117
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.07 E-value=0.057 Score=69.50 Aligned_cols=345 Identities=11% Similarity=0.019 Sum_probs=174.7
Q ss_pred cchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC-------CchHHHHHHHHHhhC
Q 000323 1007 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN-------SVGKDDMFSYSVKHN 1079 (1669)
Q Consensus 1007 ~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~-------~eea~emlekAVeln 1079 (1669)
++...+|++++...+.-... +....+..+|.+||- |-+++.+|.+|+.|++..++ .......|++|++.-
T Consensus 144 pl~~~lWl~Wl~d~~~mt~s--~~~~~v~~~~ekal~-dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~ 220 (881)
T KOG0128|consen 144 PLPPHLWLEWLKDELSMTQS--EERKEVEELFEKALG-DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSL 220 (881)
T ss_pred CCChHHHHHHHHHHHhhccC--cchhHHHHHHHHHhc-ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhh
Confidence 45558999999777766543 566889999999985 55899999999999987665 223568899998776
Q ss_pred CCCHH----HHHHHHhcCCCcccchhhHHH----HHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHH
Q 000323 1080 EGSYA----LWLMYINSRTPLNHRLDAYDA----ALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQR 1151 (1669)
Q Consensus 1080 P~NY~----LwlmYInsr~slddrl~~Ydk----AI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~t 1151 (1669)
-.-+. +|.||+... ..+.|.. .+.++....... -|- +.-+|-+.-+.--=+-..+..++++|.++
T Consensus 221 g~~~t~G~~~we~~~E~e-----~~~l~n~~~~qv~a~~~~el~~~-~D~-~~~~~~~~~~sk~h~~~~~~~~~~~a~~~ 293 (881)
T KOG0128|consen 221 GSHITEGAAIWEMYREFE-----VTYLCNVEQRQVIALFVRELKQP-LDE-DTRGWDLSEQSKAHVYDVETKKLDDALKN 293 (881)
T ss_pred hhhhcccHHHHHHHHHHH-----HHHHHhHHHHHHHHHHHHHHhcc-chh-hhhHHHHHHHHhcchHHHHhccHHHHHHH
Confidence 33333 999999987 2223333 444444433332 231 11111111111112233456788888888
Q ss_pred HHhhcccccCCCCcccchHHHHHHhhccCCcchh-----hHHHHH---HHHhhccchHHHhhhhhhhhhhccCCC----C
Q 000323 1152 ISRLLIPATGSNDRHSLFLSDILTCLTISDKLIF-----WVCCVY---LVIYRKLPDAVLQLLECEKELFAIDWP----P 1219 (1669)
Q Consensus 1152 l~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~A-----WL~~iY---llrYrvLPGd~y~q~e~~KEAf~I~W~----y 1219 (1669)
+..++... .... +.--.+.+.|+..-|-|+. -..-+| ..++..-++.|+...=-...-|.++=. +
T Consensus 294 l~~~~~~~--e~~~-q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~ 370 (881)
T KOG0128|consen 294 LAKILFKF--ERLV-QKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVH 370 (881)
T ss_pred HHHHHHHH--HHHh-hhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhccccccccccccccc
Confidence 77766511 1111 2222333333333333222 222222 222222233332221111111111000 1
Q ss_pred cccchhhHHHHHHHHHHHHHHHhhhcCCcch-----------------hhhhhhchhhHhHHHHHHHHHH-hcCHHHHHH
Q 000323 1220 VQLEDDEKQRAIKLIEMAVNSVELYSNGESL-----------------EKETNLRSAHCFAVNHIWCMAV-LNGLECSMN 1281 (1669)
Q Consensus 1220 ~~vlk~EPdnalAL~smA~dYY~~~~ndesl-----------------a~~~~~kt~~~fKLN~IR~lI~-LEDse~A~~ 1281 (1669)
...+... -....|++-|.=..+ -+.++. +......--.||++-....|.. -+.++.|..
T Consensus 371 ~ra~R~c-p~tgdL~~rallAle--R~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~ 447 (881)
T KOG0128|consen 371 PRAVRSC-PWTGDLWKRALLALE--RNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWE 447 (881)
T ss_pred chhhcCC-chHHHHHHHHHHHHH--hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHH
Confidence 1111111 111222221100000 000000 0000001113344433444433 337778888
Q ss_pred HHHHHHHh--CCCchhH-HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHH-HHHHHHHHHHHcCChHHHHHHHHHH
Q 000323 1282 LLEKYIKL--YPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQC-IWNQYVEYALQNGRHDFAAELMDRW 1357 (1669)
Q Consensus 1282 LfdklLk~--~P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~c-aW~QLIq~al~~en~d~Ai~Lc~~f 1357 (1669)
+|...+.. .+.+..+ +..--++...+..+.++.+|..++. ...+-.+ +|.+++++..+-++...+..+.++
T Consensus 448 eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imt----y~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~- 522 (881)
T KOG0128|consen 448 ELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMT----YGGGSIAGKWLEAINLEREYGDGPSARKVLRK- 522 (881)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhcccc----CCcchHHHHHHHHHhHHHHhCCchhHHHHHHH-
Confidence 88887765 5555555 3333444444447888888877643 4444455 999999999999999998875544
Q ss_pred HHhhhhccc-ccccchhhhc
Q 000323 1358 FHSVWKVQY-SQVEISDPLV 1376 (1669)
Q Consensus 1358 f~gia~~Q~-~~deALDaLr 1376 (1669)
+|.+. ..+.+.+++.
T Consensus 523 ----ay~~~~~~~~~~ev~~ 538 (881)
T KOG0128|consen 523 ----AYSQVVDPEDALEVLE 538 (881)
T ss_pred ----HHhcCcCchhHHHHHH
Confidence 55555 3333444443
No 118
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.07 E-value=0.00074 Score=63.23 Aligned_cols=76 Identities=14% Similarity=0.225 Sum_probs=65.5
Q ss_pred hhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchh
Q 000323 1028 LEGMKKALSLLSRALEADPT--SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLD 1101 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPt--SaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~ 1101 (1669)
.++|+.|+.+|.++++.+|+ +..+|+.++..|++.++-..+.+.+++ .+++|.+.. ++..|+..+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~-------- 72 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLG-------- 72 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT--------
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhC--------
Confidence 36799999999999999996 578899999999999999999999999 788887755 667788888
Q ss_pred hHHHHHHHHHH
Q 000323 1102 AYDAALSVLCR 1112 (1669)
Q Consensus 1102 ~YdkAI~aLe~ 1112 (1669)
.|++||.+|++
T Consensus 73 ~y~eAi~~l~~ 83 (84)
T PF12895_consen 73 KYEEAIKALEK 83 (84)
T ss_dssp -HHHHHHHHHH
T ss_pred CHHHHHHHHhc
Confidence 99999999976
No 119
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.02 E-value=0.0019 Score=58.20 Aligned_cols=59 Identities=20% Similarity=0.265 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHH
Q 000323 1029 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWL 1087 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~Lwl 1087 (1669)
++++.|+.++.++++++|+++.+|+.++.+|...+...++.+.|+++++++|++-..-.
T Consensus 9 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 9 EDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred CCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 56899999999999999999999999999999999999999999999999998877433
No 120
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.00 E-value=0.03 Score=67.81 Aligned_cols=158 Identities=12% Similarity=0.053 Sum_probs=90.2
Q ss_pred chHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHH-HHHHhCCCC-chHHHHHHHHHhhCCCCHH
Q 000323 1008 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEAD-PTSEILWITYL-LIFYSNTNS-VGKDDMFSYSVKHNEGSYA 1084 (1669)
Q Consensus 1008 ~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEIN-PtSaeaWy~yl-~lY~~~~~~-eea~emlekAVelnP~NY~ 1084 (1669)
+-+++=|..|-.+|.++ ++..|..+|.--=.-| .+.+.+-..|. ..|.+.+.+ ..++.|-..|+..+-.|-.
T Consensus 417 la~dlei~ka~~~lk~~-----d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~ 491 (840)
T KOG2003|consen 417 LAIDLEINKAGELLKNG-----DIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAA 491 (840)
T ss_pred hhhhhhhhHHHHHHhcc-----CHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHH
Confidence 44466677777777764 4688888876544333 34444444554 444444433 2366777777755533322
Q ss_pred HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCC
Q 000323 1085 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND 1164 (1669)
Q Consensus 1085 LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~s 1164 (1669)
...|.+...=- --.|++|.++|-++.... +-|++.|+-+---+-..|+.+.|+.-+.+|-.--++ +
T Consensus 492 ---a~~nkgn~~f~-ngd~dka~~~ykeal~nd--------asc~ealfniglt~e~~~~ldeald~f~klh~il~n--n 557 (840)
T KOG2003|consen 492 ---ALTNKGNIAFA-NGDLDKAAEFYKEALNND--------ASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN--N 557 (840)
T ss_pred ---HhhcCCceeee-cCcHHHHHHHHHHHHcCc--------hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh--h
Confidence 12233321110 015799999997665432 234777777777888999999999966665531122 2
Q ss_pred cccchHHHHHHhhccCCcchh
Q 000323 1165 RHSLFLSDILTCLTISDKLIF 1185 (1669)
Q Consensus 1165 E~~lSLsKi~~YLt~sDR~~A 1185 (1669)
- +...+..-+|+.+.|...|
T Consensus 558 ~-evl~qianiye~led~aqa 577 (840)
T KOG2003|consen 558 A-EVLVQIANIYELLEDPAQA 577 (840)
T ss_pred H-HHHHHHHHHHHHhhCHHHH
Confidence 2 3444444455555555333
No 121
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.93 E-value=0.0087 Score=57.12 Aligned_cols=96 Identities=16% Similarity=0.109 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCH-------HHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCc
Q 000323 1049 EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY-------ALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDE 1121 (1669)
Q Consensus 1049 aeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY-------~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr 1121 (1669)
+.++|..+..+...++..++.+.|+++++..|++. .++..|...+ .|+.|+..|..+...++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~~~~~p~~~ 73 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQG--------KYADAAKAFLAVVKKYPKSP 73 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhc--------cHHHHHHHHHHHHHHCCCCC
Confidence 46789999999999999999999999999998762 2777888888 89999999999888763221
Q ss_pred chhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1122 MHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1122 ~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
...++++.+..+|...|++++|+..+.++..
T Consensus 74 -----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 74 -----KAPDALLKLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred -----cccHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 2267899999999999999999999988875
No 122
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.87 E-value=0.011 Score=71.49 Aligned_cols=112 Identities=18% Similarity=0.181 Sum_probs=96.1
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHH
Q 000323 1029 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1104 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~Yd 1104 (1669)
++-.+|+.+|..+-.+=|+++.++..|+.+|-+-+.++.+.+++-....+-|.|.. |+.+||... -.+
T Consensus 572 ed~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtq--------f~e 643 (840)
T KOG2003|consen 572 EDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQ--------FSE 643 (840)
T ss_pred hCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhH--------HHH
Confidence 34488999999999999999999999999999999888888888888899999975 889999988 679
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Q 000323 1105 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1156 (1669)
Q Consensus 1105 kAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLE 1156 (1669)
+||..||+++--. |.. .-+-+..+-|+.++|||++|+.++..+-
T Consensus 644 kai~y~ekaaliq-p~~-------~kwqlmiasc~rrsgnyqka~d~yk~~h 687 (840)
T KOG2003|consen 644 KAINYFEKAALIQ-PNQ-------SKWQLMIASCFRRSGNYQKAFDLYKDIH 687 (840)
T ss_pred HHHHHHHHHHhcC-ccH-------HHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 9999999988776 553 4556677889999999999999776554
No 123
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.86 E-value=0.013 Score=61.95 Aligned_cols=105 Identities=10% Similarity=0.075 Sum_probs=78.6
Q ss_pred chHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH
Q 000323 1008 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS---EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1084 (1669)
Q Consensus 1008 ~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtS---aeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~ 1084 (1669)
.....+..+|..+... |+++.|+..|.++++++|+. +.+|+.++.+|...+..+.+..+|++|++..|.+..
T Consensus 33 ~~a~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 107 (172)
T PRK02603 33 KEAFVYYRDGMSAQAD-----GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS 107 (172)
T ss_pred hhHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence 3345566666666554 56799999999999998874 579999999999999999999999999999998877
Q ss_pred ----HHHHHHhcCC------CcccchhhHHHHHHHHHHhhhcC
Q 000323 1085 ----LWLMYINSRT------PLNHRLDAYDAALSVLCRCASAS 1117 (1669)
Q Consensus 1085 ----LwlmYInsr~------slddrl~~YdkAI~aLe~las~~ 1117 (1669)
++.+|...+. .+...+..|++|++++.+..+..
T Consensus 108 ~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 108 ALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 5566665541 12333344677777777766655
No 124
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.86 E-value=0.014 Score=61.31 Aligned_cols=103 Identities=10% Similarity=-0.010 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH--
Q 000323 1010 NEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS---EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-- 1084 (1669)
Q Consensus 1010 ~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtS---aeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-- 1084 (1669)
...|+.++..+... |+++.|+..|.+|+++.|+. +.+|+.++.+|...+..+++.++|++|++..|.+..
T Consensus 35 a~~~~~~g~~~~~~-----g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~ 109 (168)
T CHL00033 35 AFTYYRDGMSAQSE-----GEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQAL 109 (168)
T ss_pred HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 47778887777655 45799999999999998773 459999999999999999999999999999988766
Q ss_pred --HHHHHHhcC------CCcccchhhHHHHHHHHHHhhhcC
Q 000323 1085 --LWLMYINSR------TPLNHRLDAYDAALSVLCRCASAS 1117 (1669)
Q Consensus 1085 --LwlmYInsr------~slddrl~~YdkAI~aLe~las~~ 1117 (1669)
++.+|.+.+ ..+...+..|++|+.+|++.....
T Consensus 110 ~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~ 150 (168)
T CHL00033 110 NNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALA 150 (168)
T ss_pred HHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhC
Confidence 455555322 123333445778888888887777
No 125
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.82 E-value=0.0057 Score=71.29 Aligned_cols=99 Identities=16% Similarity=0.043 Sum_probs=78.7
Q ss_pred hHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHH
Q 000323 1260 HCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQY 1337 (1669)
Q Consensus 1260 ~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QL 1337 (1669)
..+|.. .--+...++.++|+..|.+++++.|+++-+ .=.++|++.. +-+.|+..++.||.++|.... +|
T Consensus 82 E~LK~e-GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg-~~~~AVkDce~Al~iDp~ysk----ay--- 152 (304)
T KOG0553|consen 82 ESLKNE-GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLG-EYEDAVKDCESALSIDPHYSK----AY--- 152 (304)
T ss_pred HHHHHH-HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhc-chHHHHHHHHHHHhcChHHHH----HH---
Confidence 334443 333344568889999999999999999888 5566666666 488888888999999988777 54
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhh
Q 000323 1338 VEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLL 1417 (1669)
Q Consensus 1338 Iq~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~L 1417 (1669)
+=||.+|+-
T Consensus 153 ---------------------------------------------------------------------~RLG~A~~~-- 161 (304)
T KOG0553|consen 153 ---------------------------------------------------------------------GRLGLAYLA-- 161 (304)
T ss_pred ---------------------------------------------------------------------HHHHHHHHc--
Confidence 557888888
Q ss_pred hcCHHHHHHHHHHHHhhccCC
Q 000323 1418 QNDWNEARLAIDAALKAAASE 1438 (1669)
Q Consensus 1418 qg~~~EAfaAYDKALkanp~N 1438 (1669)
.|+++||..||-|||..+|+|
T Consensus 162 ~gk~~~A~~aykKaLeldP~N 182 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDN 182 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCc
Confidence 999999999999999999999
No 126
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.77 E-value=0.0058 Score=73.92 Aligned_cols=93 Identities=22% Similarity=0.232 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HH
Q 000323 1011 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LW 1086 (1669)
Q Consensus 1011 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----Lw 1086 (1669)
+.++-+|.-++..+. -..|..++.++|..+|.+++++...+.++.++++.+.|....++||++.|+++. |+
T Consensus 201 ev~~~LA~v~l~~~~-----E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La 275 (395)
T PF09295_consen 201 EVAVLLARVYLLMNE-----EVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLA 275 (395)
T ss_pred cHHHHHHHHHHhcCc-----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 566667777665443 278999999999999999999999999999999999999999999999999997 88
Q ss_pred HHHHhcCCCcccchhhHHHHHHHHHHhhhc
Q 000323 1087 LMYINSRTPLNHRLDAYDAALSVLCRCASA 1116 (1669)
Q Consensus 1087 lmYInsr~slddrl~~YdkAI~aLe~las~ 1116 (1669)
..|+..+ .|+.|+.+|..+.-.
T Consensus 276 ~~Yi~~~--------d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 276 ECYIQLG--------DFENALLALNSCPML 297 (395)
T ss_pred HHHHhcC--------CHHHHHHHHhcCcCC
Confidence 8999999 999999999776543
No 127
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.77 E-value=0.019 Score=59.12 Aligned_cols=107 Identities=12% Similarity=0.079 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-------HHHHHHhcCCCccc
Q 000323 1029 EGMKKALSLLSRALEADPTS---EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-------LWLMYINSRTPLNH 1098 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPtS---aeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-------LwlmYInsr~sldd 1098 (1669)
++.+.+-..+...++-+|++ .-+++.++..++..+.-+++...|+.+++..|+... |+.+|+..+
T Consensus 25 ~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~----- 99 (145)
T PF09976_consen 25 GDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQG----- 99 (145)
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 44577777899999999999 778888999999999999999999999999877643 788899999
Q ss_pred chhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHH
Q 000323 1099 RLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRI 1152 (1669)
Q Consensus 1099 rl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl 1152 (1669)
.|++|+..|... ... + +--.++..+-++|...|++++|+..+
T Consensus 100 ---~~d~Al~~L~~~-~~~-~-------~~~~~~~~~Gdi~~~~g~~~~A~~~y 141 (145)
T PF09976_consen 100 ---QYDEALATLQQI-PDE-A-------FKALAAELLGDIYLAQGDYDEARAAY 141 (145)
T ss_pred ---CHHHHHHHHHhc-cCc-c-------hHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999552 111 1 11446778999999999999999855
No 128
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.75 E-value=0.0047 Score=73.19 Aligned_cols=79 Identities=10% Similarity=0.058 Sum_probs=71.7
Q ss_pred hhhhccchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCC
Q 000323 1002 KLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG 1081 (1669)
Q Consensus 1002 ~le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~ 1081 (1669)
-|+..+.+.+.|+.+|.-++.. |+++.|+..|.+||+++|+.+.+|+.++.+|+..+...++..+|++|++++|+
T Consensus 28 Al~~~P~~~~a~~~~a~~~~~~-----g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 28 AIDLDPNNAELYADRAQANIKL-----GNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPG 102 (356)
T ss_pred HHHhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 4556677889999999888876 56799999999999999999999999999999999999999999999999999
Q ss_pred CHHH
Q 000323 1082 SYAL 1085 (1669)
Q Consensus 1082 NY~L 1085 (1669)
+..+
T Consensus 103 ~~~~ 106 (356)
T PLN03088 103 DSRF 106 (356)
T ss_pred CHHH
Confidence 9884
No 129
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.74 E-value=3 Score=53.11 Aligned_cols=122 Identities=16% Similarity=0.116 Sum_probs=101.3
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHH
Q 000323 1028 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAAL 1107 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI 1107 (1669)
.+..+++..+|...|--.|.---.|-.|+.+.++.++-.....-|+++|+--|-+-.||.-|++.---.-+.- +.-.
T Consensus 58 ~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~---~~lr 134 (577)
T KOG1258|consen 58 IEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDP---ETLR 134 (577)
T ss_pred hhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCH---HHHH
Confidence 3445999999999999999999999999999999999999999999999999999999999998663333332 4456
Q ss_pred HHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1108 SVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1108 ~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
..||++.... . .+|..--+|-..+.....++++......+.||..
T Consensus 135 ~~fe~A~~~v--G---~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 135 DLFERAKSYV--G---LDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHHHHHHhc--c---cchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 6666665554 2 3456667888889999999999999999999995
No 130
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.71 E-value=0.27 Score=56.44 Aligned_cols=242 Identities=15% Similarity=0.104 Sum_probs=144.9
Q ss_pred hHHHHHHHHHHHhccc--c-----cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCC
Q 000323 1009 SNEQCVEMALLILNQD--A-----NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG 1081 (1669)
Q Consensus 1009 d~qlWLelAl~~Lnq~--~-----n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~ 1081 (1669)
+.+..|+.|.+.+... . ....+|+.|.++|.+| +..|...+.-.++-++|++|.+..
T Consensus 2 ~a~~l~~~Aek~lk~~~~~~~~f~~~~~~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~-- 65 (282)
T PF14938_consen 2 EAEELIKEAEKKLKKSSGFFSFFGSKKPDYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCY-- 65 (282)
T ss_dssp HHHHHHHHHHHHCS---TCCCHH--SCHHHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHhccccchhhhcCCCCCCHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHH--
Confidence 3466788899998854 1 1346889988888776 777777888888888999886543
Q ss_pred CHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccC
Q 000323 1082 SYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATG 1161 (1669)
Q Consensus 1082 NY~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~ 1161 (1669)
.+.+..+ +.-..|..|..+|.+. . ++ ...+.+...+++|...|+...|-..+.+|-.
T Consensus 66 --------~~~~~~~-~Aa~~~~~Aa~~~k~~---~-~~------~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~---- 122 (282)
T PF14938_consen 66 --------EKLGDKF-EAAKAYEEAANCYKKG---D-PD------EAIECYEKAIEIYREAGRFSQAAKCLKELAE---- 122 (282)
T ss_dssp --------HHTT-HH-HHHHHHHHHHHHHHHT---T-HH------HHHHHHHHHHHHHHHCT-HHHHHHHHHHHHH----
T ss_pred --------HHcCCHH-HHHHHHHHHHHHHHhh---C-HH------HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH----
Confidence 3333100 0111344444444222 1 11 2356777778888888888877664333221
Q ss_pred CCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHH
Q 000323 1162 SNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSV 1241 (1669)
Q Consensus 1162 g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY 1241 (1669)
+ |...+ .+++.|+.++..|+++|
T Consensus 123 -------------~-------------------ye~~~-------------------------~d~e~Ai~~Y~~A~~~y 145 (282)
T PF14938_consen 123 -------------I-------------------YEEQL-------------------------GDYEKAIEYYQKAAELY 145 (282)
T ss_dssp -------------H-------------------HCCTT---------------------------HHHHHHHHHHHHHHH
T ss_pred -------------H-------------------HHHHc-------------------------CCHHHHHHHHHHHHHHH
Confidence 0 11110 24588888999999999
Q ss_pred hhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH-------HHHHH--HHhhcccCCcc
Q 000323 1242 ELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-------VLMKA--RLQKHDFGDLS 1312 (1669)
Q Consensus 1242 ~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL-------~L~AA--yL~~K~m~~~A 1312 (1669)
+. .+. ........++...+++.+++.++|+++|+++.+.+-....+ .|.+. +|...+ +..|
T Consensus 146 ~~-e~~--------~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D-~v~A 215 (282)
T PF14938_consen 146 EQ-EGS--------PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGD-YVAA 215 (282)
T ss_dssp HH-TT---------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT--HHHH
T ss_pred HH-CCC--------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCC-HHHH
Confidence 86 221 22334455565666677889999999999999987654322 23333 333333 6678
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000323 1313 SVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1356 (1669)
Q Consensus 1313 ~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ 1356 (1669)
...|+.....+|.=...-.|....=|--+++.+|.+..-..+..
T Consensus 216 ~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~ 259 (282)
T PF14938_consen 216 RKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAE 259 (282)
T ss_dssp HHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHH
T ss_pred HHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 89999999999866554455555555566777776665555544
No 131
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.67 E-value=1 Score=58.77 Aligned_cols=317 Identities=11% Similarity=-0.011 Sum_probs=169.8
Q ss_pred hhHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH---------HHHHHH
Q 000323 1029 EGMKKALSLLSRALEADPT---------SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---------LWLMYI 1090 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPt---------SaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~---------LwlmYI 1090 (1669)
++++.|..++.++++.-+. ..++...++.++...+...++..+++.|++..|.... ++.+|.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 4568888888888765332 1233344566677788888899999999986554432 344455
Q ss_pred hcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchH
Q 000323 1091 NSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFL 1170 (1669)
Q Consensus 1091 nsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSL 1170 (1669)
..+ .|++|+..|++..... ... .......-.+..+..++...|+++.|+..+.+....+...
T Consensus 503 ~~G--------~~~~A~~~~~~al~~~-~~~-g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~-------- 564 (903)
T PRK04841 503 CKG--------ELARALAMMQQTEQMA-RQH-DVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQ-------- 564 (903)
T ss_pred HcC--------CHHHHHHHHHHHHHHH-hhh-cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--------
Confidence 555 6788888887765543 111 0112223356677888899999999999665554311110
Q ss_pred HHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcch
Q 000323 1171 SDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESL 1250 (1669)
Q Consensus 1171 sKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesl 1250 (1669)
+..........+ .+.+.++...|...+|. .++..|...+.. .+.
T Consensus 565 ---------~~~~~~~~~~~~-----~~la~~~~~~G~~~~A~------------------~~~~~al~~~~~-~~~--- 608 (903)
T PRK04841 565 ---------HLEQLPMHEFLL-----RIRAQLLWEWARLDEAE------------------QCARKGLEVLSN-YQP--- 608 (903)
T ss_pred ---------ccccccHHHHHH-----HHHHHHHHHhcCHHHHH------------------HHHHHhHHhhhc-cCc---
Confidence 110001111111 11244444444444443 333333222221 110
Q ss_pred hhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---hhH-----HHHHHHHhhcccCCccHHHHHHHHHh
Q 000323 1251 EKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSC---LEL-----VLMKARLQKHDFGDLSSVGFEEALIK 1322 (1669)
Q Consensus 1251 a~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d---~eL-----~L~AAyL~~K~m~~~A~svle~AL~~ 1322 (1669)
......-....+.+...++.+.|...+..++...+.. ... .+...++...+..+.+...+......
T Consensus 609 ------~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~ 682 (903)
T PRK04841 609 ------QQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP 682 (903)
T ss_pred ------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC
Confidence 0001111122233334778999999998887654322 111 11222323333244555555554432
Q ss_pred CCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccch
Q 000323 1323 WPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQM 1402 (1669)
Q Consensus 1323 ~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~ 1402 (1669)
.+.........+..+....+..+++++|..++.+... ..+..... .
T Consensus 683 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~--------------~~~~~g~~--------------------~ 728 (903)
T PRK04841 683 EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE--------------NARSLRLM--------------------S 728 (903)
T ss_pred CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------HHHHhCch--------------------H
Confidence 2222211222345667778888999999988766322 21111100 0
Q ss_pred hhHH--HHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHH
Q 000323 1403 DVMF--GYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFK 1441 (1669)
Q Consensus 1403 d~~f--a~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i 1441 (1669)
+.+. ..++.+|+. .|+.++|..++.+||.......+.
T Consensus 729 ~~a~~~~~la~a~~~--~G~~~~A~~~L~~Al~la~~~g~~ 767 (903)
T PRK04841 729 DLNRNLILLNQLYWQ--QGRKSEAQRVLLEALKLANRTGFI 767 (903)
T ss_pred HHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHhCccchh
Confidence 1111 455666766 999999999999999988876554
No 132
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.55 E-value=0.018 Score=66.26 Aligned_cols=97 Identities=15% Similarity=0.037 Sum_probs=82.7
Q ss_pred CHHHHHHHHHH-HHhCCCCchHHHHHHHHHhhCCCC-------HHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCC
Q 000323 1048 SEILWITYLLI-FYSNTNSVGKDDMFSYSVKHNEGS-------YALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDG 1119 (1669)
Q Consensus 1048 SaeaWy~yl~l-Y~~~~~~eea~emlekAVelnP~N-------Y~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~ 1119 (1669)
++..||..+.- +...+...++...|++.++..|++ |||+..|.+.+ .|++|+..|...++.+ |
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g--------~~~~A~~~f~~vv~~y-P 211 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKG--------KKDDAAYYFASVVKNY-P 211 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHC-C
Confidence 45788888664 455677778999999999999987 66889999999 9999999999999988 4
Q ss_pred CcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1120 DEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1120 Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
+ |....|.++.+..+|...|++++|+.++..+..
T Consensus 212 ~----s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 212 K----SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred C----CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 345699999999999999999999998888775
No 133
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.55 E-value=0.026 Score=70.43 Aligned_cols=122 Identities=15% Similarity=0.107 Sum_probs=90.3
Q ss_pred HHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC--C------chHHHHHHHHHhh--CCCC---H
Q 000323 1017 ALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN--S------VGKDDMFSYSVKH--NEGS---Y 1083 (1669)
Q Consensus 1017 Al~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~--~------eea~emlekAVel--nP~N---Y 1083 (1669)
|..++++. ..+.+..|..+|.+|++++|+.+.+|-.++..|..+.. + ..+.+..++|+.+ +|.. |
T Consensus 346 g~~~~~~~--~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~ 423 (517)
T PRK10153 346 AHHYLNSG--DAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIY 423 (517)
T ss_pred HHHHHhcC--CHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHH
Confidence 45555443 35678999999999999999999999998776643311 1 1244555666554 4333 3
Q ss_pred H-HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1084 A-LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1084 ~-LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
. ++.+++..+ .+++|...|+++.+.+ ++ -+.+..+.++|...|+++.|+.-+.+-+.
T Consensus 424 ~ala~~~~~~g--------~~~~A~~~l~rAl~L~-ps--------~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 424 EILAVQALVKG--------KTDEAYQAINKAIDLE-MS--------WLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHhcC--------CHHHHHHHHHHHHHcC-CC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3 777777777 8899999999998887 44 46899999999999999999997666553
No 134
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.52 E-value=0.041 Score=62.44 Aligned_cols=144 Identities=13% Similarity=0.131 Sum_probs=102.2
Q ss_pred chHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH
Q 000323 1008 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILW---ITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1084 (1669)
Q Consensus 1008 ~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaW---y~yl~lY~~~~~~eea~emlekAVelnP~NY~ 1084 (1669)
.+.+.+...|...+.. |+|+.|+..|..+++.+|.++.+- +.++..|++.++-.++...|++.++..|++-.
T Consensus 30 ~~~~~~Y~~A~~~~~~-----g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~ 104 (243)
T PRK10866 30 NPPSEIYATAQQKLQD-----GNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 104 (243)
T ss_pred CCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence 3556677888888775 568999999999999999988776 88899999999999999999999999999876
Q ss_pred HH-HHHHh------cC-------CC--cccch-hhHHHHHHHHHHhhhcCCCCcch---hhhhhH-------HHHHHHHH
Q 000323 1085 LW-LMYIN------SR-------TP--LNHRL-DAYDAALSVLCRCASASDGDEMH---ASACIL-------DLFLQMLQ 1137 (1669)
Q Consensus 1085 Lw-lmYIn------sr-------~s--lddrl-~~YdkAI~aLe~las~~~~Dr~~---~Sa~iL-------DILL~Lvq 1137 (1669)
.- -+|.. .. .. ..+++ ..-.+|+..|.+....+ |+-.. +-..+. +-=+....
T Consensus 105 ~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-P~S~ya~~A~~rl~~l~~~la~~e~~ia~ 183 (243)
T PRK10866 105 IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-PNSQYTTDATKRLVFLKDRLAKYELSVAE 183 (243)
T ss_pred hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 12221 11 00 11222 12367999999999999 45211 111222 22245567
Q ss_pred HHHHhcCHHHHHHHHHhhcc
Q 000323 1138 CFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1138 LY~qSGnydKAI~tl~rLEq 1157 (1669)
+|...|.|.-||.++..+..
T Consensus 184 ~Y~~~~~y~AA~~r~~~v~~ 203 (243)
T PRK10866 184 YYTKRGAYVAVVNRVEQMLR 203 (243)
T ss_pred HHHHcCchHHHHHHHHHHHH
Confidence 78888888888888777774
No 135
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.52 E-value=0.0075 Score=68.91 Aligned_cols=143 Identities=15% Similarity=0.203 Sum_probs=87.5
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhC--CCCHH--------HHHHHHhc-CCCc
Q 000323 1028 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHN--EGSYA--------LWLMYINS-RTPL 1096 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVeln--P~NY~--------LwlmYIns-r~sl 1096 (1669)
.+.|..|-.++.+ +.....++.+|..-+.+|... ...++.++|++|+++. -++.. ++.+|.+. +
T Consensus 55 ~~ay~kAa~~~~~-~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~--- 129 (282)
T PF14938_consen 55 AEAYEKAADCYEK-LGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLG--- 129 (282)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT----
T ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcC---
Confidence 3344444444433 222233555666666776555 6778889999998752 23333 66777776 5
Q ss_pred ccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCc----ccchHHH
Q 000323 1097 NHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDR----HSLFLSD 1172 (1669)
Q Consensus 1097 ddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE----~~lSLsK 1172 (1669)
.|++|++.|.+++.-+..+ .......++++.+..|+...|+|++||..+.++....++...- +...+..
T Consensus 130 -----d~e~Ai~~Y~~A~~~y~~e--~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 130 -----DYEKAIEYYQKAAELYEQE--GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp ------HHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHHHHHHC--CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 7889999998877765222 2556778999999999999999999999888876533322111 1234455
Q ss_pred HHHhhccCCc
Q 000323 1173 ILTCLTISDK 1182 (1669)
Q Consensus 1173 i~~YLt~sDR 1182 (1669)
+..||.++|-
T Consensus 203 ~l~~L~~~D~ 212 (282)
T PF14938_consen 203 ILCHLAMGDY 212 (282)
T ss_dssp HHHHHHTT-H
T ss_pred HHHHHHcCCH
Confidence 5556665553
No 136
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.52 E-value=0.021 Score=61.66 Aligned_cols=104 Identities=15% Similarity=0.160 Sum_probs=77.5
Q ss_pred HHHHHHhC-CCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHH
Q 000323 1038 LSRALEAD-PTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCR 1112 (1669)
Q Consensus 1038 LsrALEIN-PtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~ 1112 (1669)
|.-...+. ++.=+..|.|+..+++.++-.++..+|+..+.++|.+.. |+.+|...+ .|.+||.+|..
T Consensus 23 l~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g--------~~~~AI~aY~~ 94 (157)
T PRK15363 23 LRMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQK--------HWGEAIYAYGR 94 (157)
T ss_pred HHHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh--------hHHHHHHHHHH
Confidence 44455677 777778888888888888877888888888888887766 777777777 78888888877
Q ss_pred hhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1113 CASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1113 las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
+..-. ++- -...+.+..+|.+-|+.+.|++.+..-..
T Consensus 95 A~~L~-~dd-------p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 95 AAQIK-IDA-------PQAPWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHhcC-CCC-------chHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77766 343 56778888888888888888875554443
No 137
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.50 E-value=0.0058 Score=74.64 Aligned_cols=75 Identities=15% Similarity=0.217 Sum_probs=66.2
Q ss_pred hhccchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHhCCCCchHHHHHHHHHhhCC
Q 000323 1004 KQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEIL---WITYLLIFYSNTNSVGKDDMFSYSVKHNE 1080 (1669)
Q Consensus 1004 e~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaea---Wy~yl~lY~~~~~~eea~emlekAVelnP 1080 (1669)
++.|.+.+.|+.++.-+... |+|+.|+..|++||+++|+++++ ||.++..|..++..+++.++|++|+++.+
T Consensus 69 ~~dP~~a~a~~NLG~AL~~l-----GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn 143 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSK-----GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYN 143 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 46677889999999988776 56899999999999999999965 99999999999999999999999999853
Q ss_pred CCH
Q 000323 1081 GSY 1083 (1669)
Q Consensus 1081 ~NY 1083 (1669)
..|
T Consensus 144 ~~f 146 (453)
T PLN03098 144 LKF 146 (453)
T ss_pred hhH
Confidence 333
No 138
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.38 E-value=0.32 Score=60.81 Aligned_cols=93 Identities=17% Similarity=0.164 Sum_probs=76.5
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhhcccCCccHHHHHHHHHh--CCCCCchHHHHHHHHHHHHHHcC
Q 000323 1269 CMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIK--WPKGVPGIQCIWNQYVEYALQNG 1345 (1669)
Q Consensus 1269 ~lI~LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~~--~PkNa~g~~caW~QLIq~al~~e 1345 (1669)
-|....|.+-|...|...|+.+|++... .-+..||.--+-..-++.+|++++.. .|+... .+|.-.|.++-.=|
T Consensus 410 Ey~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~---~Iw~r~l~yES~vG 486 (656)
T KOG1914|consen 410 EYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSK---EIWDRMLEYESNVG 486 (656)
T ss_pred HHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhH---HHHHHHHHHHHhcc
Confidence 3333448888889999999999999999 77778876655466888999999998 554443 69999999999999
Q ss_pred ChHHHHHHHHHHHHhhhhc
Q 000323 1346 RHDFAAELMDRWFHSVWKV 1364 (1669)
Q Consensus 1346 n~d~Ai~Lc~~ff~gia~~ 1364 (1669)
|+..++.|-++.|..+...
T Consensus 487 dL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 487 DLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred cHHHHHHHHHHHHHhcchh
Confidence 9999999999988877644
No 139
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.33 E-value=0.031 Score=59.06 Aligned_cols=94 Identities=10% Similarity=0.132 Sum_probs=71.6
Q ss_pred HHHHHHHHHhCC--CCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCH-----H--HHHHHHhcCCCcccchhhHHH
Q 000323 1035 LSLLSRALEADP--TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY-----A--LWLMYINSRTPLNHRLDAYDA 1105 (1669)
Q Consensus 1035 LdLLsrALEINP--tSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY-----~--LwlmYInsr~slddrl~~Ydk 1105 (1669)
.+++...+.+++ ..+.+++.++.+|...+..+++.++|++|++..|+.. + ++.+|...+ .|++
T Consensus 19 ~~~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g--------~~~~ 90 (172)
T PRK02603 19 ADLILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNG--------EHDK 90 (172)
T ss_pred HHHHHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcC--------CHHH
Confidence 344445555444 4566778889999999999999999999999877532 1 677788777 8999
Q ss_pred HHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcC
Q 000323 1106 ALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGN 1144 (1669)
Q Consensus 1106 AI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGn 1144 (1669)
|+.+|.+..... ++. .+.+..+..+|...|+
T Consensus 91 A~~~~~~al~~~-p~~-------~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 91 ALEYYHQALELN-PKQ-------PSALNNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHHHhC-ccc-------HHHHHHHHHHHHHcCC
Confidence 999999988877 554 5667777778877766
No 140
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.27 E-value=0.041 Score=65.54 Aligned_cols=125 Identities=14% Similarity=0.116 Sum_probs=84.9
Q ss_pred hhhhccc-hHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCC
Q 000323 1002 KLKQVEL-SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNE 1080 (1669)
Q Consensus 1002 ~le~~~~-d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP 1080 (1669)
+++.-.. +.++||..+.-+| |+|+.|++.|.-+.+-+--.+++|..++..+...|.-.++...-++| |
T Consensus 50 ~~~~EEE~~~~lWia~C~fhL-------gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka----~ 118 (557)
T KOG3785|consen 50 NLDREEEDSLQLWIAHCYFHL-------GDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA----P 118 (557)
T ss_pred ccchhhhHHHHHHHHHHHHhh-------ccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC----C
Confidence 4444443 5599999988776 77999999999999988889999999988877777666665554444 5
Q ss_pred CCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Q 000323 1081 GSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1156 (1669)
Q Consensus 1081 ~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLE 1156 (1669)
.+-. |..+-.+.. | -.+-+++-+++ .|- +|=-|.|+-..-|--.|+.||.++.|++
T Consensus 119 k~pL~~RLlfhlahkln----d----Ek~~~~fh~~L-----qD~-------~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 119 KTPLCIRLLFHLAHKLN----D----EKRILTFHSSL-----QDT-------LEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred CChHHHHHHHHHHHHhC----c----HHHHHHHHHHH-----hhh-------HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554 222222222 1 12333333222 232 3445667777777788999999999999
Q ss_pred c
Q 000323 1157 I 1157 (1669)
Q Consensus 1157 q 1157 (1669)
+
T Consensus 179 ~ 179 (557)
T KOG3785|consen 179 Q 179 (557)
T ss_pred h
Confidence 7
No 141
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.23 Score=60.54 Aligned_cols=288 Identities=13% Similarity=0.022 Sum_probs=181.5
Q ss_pred CHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHH-HHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhh
Q 000323 1048 SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALW-LMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASA 1126 (1669)
Q Consensus 1048 SaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~Lw-lmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa 1126 (1669)
.+.++-++..+..-.-+..+.-.|-..+|...|.-.|+| |.|.--.-... +- .|..+....-+.-..+ +++
T Consensus 160 cp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~-~h-s~a~~t~l~le~~~~l-r~N----- 231 (564)
T KOG1174|consen 160 CPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNF-KH-SDASQTFLMLHDNTTL-RCN----- 231 (564)
T ss_pred cchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhc-cc-chhhhHHHHHHhhccC-Ccc-----
Confidence 455555555555444556667788889999998888866 44433220000 00 3444555554555666 677
Q ss_pred hhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhh
Q 000323 1127 CILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLL 1206 (1669)
Q Consensus 1127 ~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~ 1206 (1669)
.+++..+.++|...|++++|+.+...-. ..+| ..+..|-+ |..|+ .+.
T Consensus 232 --vhLl~~lak~~~~~Gdn~~a~~~Fe~~~-----~~dp--y~i~~MD~-------------------Ya~LL----~~e 279 (564)
T KOG1174|consen 232 --EHLMMALGKCLYYNGDYFQAEDIFSSTL-----CANP--DNVEAMDL-------------------YAVLL----GQE 279 (564)
T ss_pred --HHHHHHHhhhhhhhcCchHHHHHHHHHh-----hCCh--hhhhhHHH-------------------HHHHH----Hhc
Confidence 9999999999999999999998443222 2333 11111111 22211 111
Q ss_pred hhhhhhhccCCCCcccchhhHHHHHH----HHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHH
Q 000323 1207 ECEKELFAIDWPPVQLEDDEKQRAIK----LIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNL 1282 (1669)
Q Consensus 1207 e~~KEAf~I~W~y~~vlk~EPdnalA----L~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~L 1282 (1669)
+. | +..-+ ||+- +-| +....=+. ...+..-.+...|+.+
T Consensus 280 g~----------~--------e~~~~L~~~Lf~~--~~~----------------ta~~wfV~-~~~l~~~K~~~rAL~~ 322 (564)
T KOG1174|consen 280 GG----------C--------EQDSALMDYLFAK--VKY----------------TASHWFVH-AQLLYDEKKFERALNF 322 (564)
T ss_pred cC----------H--------hhHHHHHHHHHhh--hhc----------------chhhhhhh-hhhhhhhhhHHHHHHH
Confidence 10 0 11111 2221 101 11111111 1121223388889999
Q ss_pred HHHHHHhCCCchhH-HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 000323 1283 LEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSV 1361 (1669)
Q Consensus 1283 fdklLk~~P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gi 1361 (1669)
-.+.+...|..++- .|++..|..-+-++.|+-.|..|..+.|-.-. ++.=|+...+..+++.+|.-+++.-|..+
T Consensus 323 ~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~----~Y~GL~hsYLA~~~~kEA~~~An~~~~~~ 398 (564)
T KOG1174|consen 323 VEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLE----IYRGLFHSYLAQKRFKEANALANWTIRLF 398 (564)
T ss_pred HHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHH----HHHHHHHHHHhhchHHHHHHHHHHHHHHh
Confidence 99999999999998 88888764444499999999999999998888 77778999999999999999987766655
Q ss_pred hhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHH
Q 000323 1362 WKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFK 1441 (1669)
Q Consensus 1362 a~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i 1441 (1669)
..+.+ +|..+ |--.|..--..-++|...|||+|+.+|+= +
T Consensus 399 ~~sA~----~LtL~----------------------------------g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y--~ 438 (564)
T KOG1174|consen 399 QNSAR----SLTLF----------------------------------GTLVLFPDPRMREKAKKFAEKSLKINPIY--T 438 (564)
T ss_pred hcchh----hhhhh----------------------------------cceeeccCchhHHHHHHHHHhhhccCCcc--H
Confidence 44322 22222 21111111334589999999999999987 9
Q ss_pred HHHHHHHHHHhcCCC
Q 000323 1442 HCVREHAMLLLINES 1456 (1669)
Q Consensus 1442 ~cLNNYAYFLS~e~~ 1456 (1669)
...+--|-.++.+|+
T Consensus 439 ~AV~~~AEL~~~Eg~ 453 (564)
T KOG1174|consen 439 PAVNLIAELCQVEGP 453 (564)
T ss_pred HHHHHHHHHHHhhCc
Confidence 999999999999886
No 142
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.24 E-value=0.04 Score=64.18 Aligned_cols=225 Identities=14% Similarity=0.052 Sum_probs=120.6
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCC
Q 000323 1102 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISD 1181 (1669)
Q Consensus 1102 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sD 1181 (1669)
.|..+|.-.. .....+... ++...++...|...|.++.+|. .|. ++.++.-..+.-+..|+...+
T Consensus 16 ~Y~~~i~e~~-~~~~~~~~~-------~e~~~~~~Rs~iAlg~~~~vl~---ei~----~~~~~~l~av~~la~y~~~~~ 80 (290)
T PF04733_consen 16 NYQQCINEAS-LKSFSPENK-------LERDFYQYRSYIALGQYDSVLS---EIK----KSSSPELQAVRLLAEYLSSPS 80 (290)
T ss_dssp -HHHHCHHHH-CHTSTCHHH-------HHHHHHHHHHHHHTT-HHHHHH---HS-----TTSSCCCHHHHHHHHHHCTST
T ss_pred hHHHHHHHhh-ccCCCchhH-------HHHHHHHHHHHHHcCChhHHHH---Hhc----cCCChhHHHHHHHHHHHhCcc
Confidence 6788886554 333332234 7788888899999999998776 222 222332334555667776633
Q ss_pred cc-hh------hHHHHH---HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchh
Q 000323 1182 KL-IF------WVCCVY---LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLE 1251 (1669)
Q Consensus 1182 R~-~A------WL~~iY---llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla 1251 (1669)
+. .+ |+...+ ...++++-+-+|...|...+|+.+ +.+.-.-|.-... +..|=. .|.-+++
T Consensus 81 ~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~---l~~~~~lE~~al~------Vqi~L~-~~R~dlA 150 (290)
T PF04733_consen 81 DKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKL---LHKGGSLELLALA------VQILLK-MNRPDLA 150 (290)
T ss_dssp THHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCC---CTTTTCHHHHHHH------HHHHHH-TT-HHHH
T ss_pred chHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHH---HHccCcccHHHHH------HHHHHH-cCCHHHH
Confidence 22 11 333332 234566677777777888888887 5554222222111 222211 3444444
Q ss_pred hhh---h-----hchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHH
Q 000323 1252 KET---N-----LRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALI 1321 (1669)
Q Consensus 1252 ~~~---~-----~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~ 1321 (1669)
... - ..+...+...++..+..-+....|.-.|+.+.+.+|..+.+ .+..++|..++ .++|...+++|+.
T Consensus 151 ~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~-~~eAe~~L~~al~ 229 (290)
T PF04733_consen 151 EKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGH-YEEAEELLEEALE 229 (290)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT--HHHHHHHHHHHCC
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHH
Confidence 443 1 11112222222222222335777888888888887777776 56666666665 7778888888888
Q ss_pred hCCCCCchHHHHHHHHHHHHHHcCCh-HHHHHHHHH
Q 000323 1322 KWPKGVPGIQCIWNQYVEYALQNGRH-DFAAELMDR 1356 (1669)
Q Consensus 1322 ~~PkNa~g~~caW~QLIq~al~~en~-d~Ai~Lc~~ 1356 (1669)
.+|+++. ...-+|-.....|+. +.+.+...+
T Consensus 230 ~~~~~~d----~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 230 KDPNDPD----TLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp C-CCHHH----HHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hccCCHH----HHHHHHHHHHHhCCChhHHHHHHHH
Confidence 8888777 444445555555555 444444433
No 143
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.12 Score=64.29 Aligned_cols=98 Identities=12% Similarity=0.074 Sum_probs=79.1
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchh
Q 000323 1026 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLD 1101 (1669)
Q Consensus 1026 n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~ 1101 (1669)
..+|+|+.|..+|..|+.++|++-.+|..-+..|...++-++++.--.+.++++|+=-. ++.-.+..+
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg-------- 84 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG-------- 84 (539)
T ss_pred cccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc--------
Confidence 45799999999999999999999999999999999999989988889999999984211 455555555
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHH
Q 000323 1102 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCF 1139 (1669)
Q Consensus 1102 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY 1139 (1669)
.|++|+..|.+..+.. +++ --+.--|++.+
T Consensus 85 ~~~eA~~ay~~GL~~d-~~n-------~~L~~gl~~a~ 114 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKD-PSN-------KQLKTGLAQAY 114 (539)
T ss_pred cHHHHHHHHHHHhhcC-Cch-------HHHHHhHHHhh
Confidence 8999999999888887 665 33444455555
No 144
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=96.19 E-value=0.057 Score=68.85 Aligned_cols=178 Identities=17% Similarity=0.218 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhh
Q 000323 1129 LDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLEC 1208 (1669)
Q Consensus 1129 LDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~ 1208 (1669)
++.|-..+.||+..|..+||-..+.+... .. .|. .|+| ++||+..+..+
T Consensus 424 lemw~~vi~CY~~lg~~~kaeei~~q~le-----k~---------------~d~--~lyc---------~LGDv~~d~s~ 472 (777)
T KOG1128|consen 424 LEMWDPVILCYLLLGQHGKAEEINRQELE-----KD---------------PDP--RLYC---------LLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHhc-----CC---------------Ccc--hhHH---------HhhhhccChHH
Confidence 45666778899999988888665554442 11 111 3443 36777777777
Q ss_pred hhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHH---------HHHHHhcCHHHH
Q 000323 1209 EKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHI---------WCMAVLNGLECS 1279 (1669)
Q Consensus 1209 ~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~I---------R~lI~LEDse~A 1279 (1669)
..+|+.+ .+.-++.|..+.|--.|+. .. +++..+.....+.+|.+ -+.+.+++.+.+
T Consensus 473 yEkawEl---------sn~~sarA~r~~~~~~~~~----~~-fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 473 YEKAWEL---------SNYISARAQRSLALLILSN----KD-FSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred HHHHHHH---------hhhhhHHHHHhhccccccc----hh-HHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 7777776 2233444554433222321 11 11112233344444432 222347799999
Q ss_pred HHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000323 1280 MNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1356 (1669)
Q Consensus 1280 ~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ 1356 (1669)
...|...+.+.|...+- -|.++||.+++ ..+|+..+.+|+.-+=++-. +|.-|.-.+..-+.+++|++.+.+
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~-k~ra~~~l~EAlKcn~~~w~----iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKK-KKRAFRKLKEALKCNYQHWQ----IWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhh-hHHHHHHHHHHhhcCCCCCe----eeechhhhhhhcccHHHHHHHHHH
Confidence 99999999999999999 89999999887 88999999999999988888 999999999999999999998866
No 145
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.18 E-value=0.014 Score=52.19 Aligned_cols=64 Identities=13% Similarity=0.257 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcC
Q 000323 1047 TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASAS 1117 (1669)
Q Consensus 1047 tSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~ 1117 (1669)
.++.+|+.++.+|...++-.++..+|++|++++|++.. ++..|...+ ..|++|+..+.+..+.+
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~-------~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG-------KDYEEAIEDFEKALKLD 68 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT-------THHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-------ccHHHHHHHHHHHHHcC
Confidence 46899999999999999999999999999999998877 566777775 15889999988776654
No 146
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.18 E-value=0.039 Score=57.96 Aligned_cols=106 Identities=11% Similarity=0.037 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-------HHHHHHhcCCCcccchh
Q 000323 1031 MKKALSLLSRALEADPTS--EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-------LWLMYINSRTPLNHRLD 1101 (1669)
Q Consensus 1031 ydAALdLLsrALEINPtS--aeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-------LwlmYInsr~slddrl~ 1101 (1669)
|..+.+.|...+..++.. +.+|+.++.++..++..+++...|++|+++.|+... ++.+|...+
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g-------- 86 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG-------- 86 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC--------
Confidence 455556666666666666 778899999999999999999999999999776432 778888888
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHH-------HhcCHHHHHHHH
Q 000323 1102 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFC-------MSGNTEKAIQRI 1152 (1669)
Q Consensus 1102 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~-------qSGnydKAI~tl 1152 (1669)
.+++|+..|++..+.. ++. .+.+..+..+|. ..|+++.|+..+
T Consensus 87 ~~~eA~~~~~~Al~~~-~~~-------~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 87 EHTKALEYYFQALERN-PFL-------PQALNNMAVICHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred CHHHHHHHHHHHHHhC-cCc-------HHHHHHHHHHHHHhhHHHHHcccHHHHHHHH
Confidence 8999999999988876 565 455666666666 778877665533
No 147
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.15 E-value=0.018 Score=62.17 Aligned_cols=92 Identities=10% Similarity=-0.018 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HH
Q 000323 1011 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LW 1086 (1669)
Q Consensus 1011 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----Lw 1086 (1669)
+.--.+|.....+ |+++.|..+|+-...+||.++.-||-|+..+-.+++-.++.+.|.+|+.++|+++. ++
T Consensus 36 ~~lY~~A~~ly~~-----G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag 110 (157)
T PRK15363 36 NTLYRYAMQLMEV-----KEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 5555666666665 56799999999999999999999999999999999999999999999999999988 88
Q ss_pred HHHHhcCCCcccchhhHHHHHHHHHHhhh
Q 000323 1087 LMYINSRTPLNHRLDAYDAALSVLCRCAS 1115 (1669)
Q Consensus 1087 lmYInsr~slddrl~~YdkAI~aLe~las 1115 (1669)
..|+..+ ..+.|+..|.....
T Consensus 111 ~c~L~lG--------~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 111 ECYLACD--------NVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHcC--------CHHHHHHHHHHHHH
Confidence 8999988 66888888865544
No 148
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.14 E-value=0.015 Score=54.64 Aligned_cols=75 Identities=17% Similarity=0.314 Sum_probs=59.0
Q ss_pred CCCchHHHHHHHHHhhCCCC----HH--HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHH
Q 000323 1063 TNSVGKDDMFSYSVKHNEGS----YA--LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQML 1136 (1669)
Q Consensus 1063 ~~~eea~emlekAVelnP~N----Y~--LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~Lv 1136 (1669)
+.-+.+..+|+++++..|.+ ++ ++..|.+.+ .|++|+.+|.+ .... +.. .++.+.+.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~--------~y~~A~~~~~~-~~~~-~~~-------~~~~~l~a 65 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQG--------KYEEAIELLQK-LKLD-PSN-------PDIHYLLA 65 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTT--------HHHHHHHHHHC-HTHH-HCH-------HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCC--------CHHHHHHHHHH-hCCC-CCC-------HHHHHHHH
Confidence 34456889999999999964 34 588999999 99999999977 3333 333 67777889
Q ss_pred HHHHHhcCHHHHHHHHHh
Q 000323 1137 QCFCMSGNTEKAIQRISR 1154 (1669)
Q Consensus 1137 qLY~qSGnydKAI~tl~r 1154 (1669)
+++...|+|++||..|.+
T Consensus 66 ~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHTT-HHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhc
Confidence 999999999999997754
No 149
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.09 E-value=0.0073 Score=53.65 Aligned_cols=60 Identities=18% Similarity=0.107 Sum_probs=46.2
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHH--HhhcccCCccHHHHHHHHHhCCCCC
Q 000323 1267 IWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKAR--LQKHDFGDLSSVGFEEALIKWPKGV 1327 (1669)
Q Consensus 1267 IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAy--L~~K~m~~~A~svle~AL~~~PkNa 1327 (1669)
.+.++..++.++|+.+|+++++..|.+.+.++..+. +..+ -.++|+..|++++...|+|+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g-~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQG-RYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCcCCC
Confidence 345566779999999999999999999999333333 3333 38899999999999999874
No 150
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.09 E-value=0.61 Score=60.48 Aligned_cols=361 Identities=11% Similarity=0.098 Sum_probs=209.3
Q ss_pred hcccc-cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC------------CCchHHHHHHHHHhhCCCCHH--H
Q 000323 1021 LNQDA-NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNT------------NSVGKDDMFSYSVKHNEGSYA--L 1085 (1669)
Q Consensus 1021 Lnq~~-n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~------------~~eea~emlekAVelnP~NY~--L 1085 (1669)
|++.. -..|++|+||.-.+-. .+..+|-.++.+-.+.. +..-....+++|.+.. ++.. +
T Consensus 733 l~FSfyvtiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~-~e~eakv 806 (1416)
T KOG3617|consen 733 LDFSFYVTIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG-EEDEAKV 806 (1416)
T ss_pred hceeEEEEeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC-cchhhHH
Confidence 34443 3578899998655443 56788988887654221 1122346677885544 4444 8
Q ss_pred HHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCc
Q 000323 1086 WLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDR 1165 (1669)
Q Consensus 1086 wlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE 1165 (1669)
+-+-|..+ +.++|+.+|-+. +++ |+ |=+||..+|.++.|.+ |-. +-+...-
T Consensus 807 AvLAieLg--------MlEeA~~lYr~c-kR~------------DL---lNKlyQs~g~w~eA~e----iAE-~~DRiHL 857 (1416)
T KOG3617|consen 807 AVLAIELG--------MLEEALILYRQC-KRY------------DL---LNKLYQSQGMWSEAFE----IAE-TKDRIHL 857 (1416)
T ss_pred HHHHHHHh--------hHHHHHHHHHHH-HHH------------HH---HHHHHHhcccHHHHHH----HHh-hccceeh
Confidence 88888888 889999988332 222 33 4578889999999988 332 1111100
Q ss_pred ccchHHHHHHhhccCCcchhhHHHH-----H-HHHhhcc---chH--HHhhhhhhhhhhccCCC-CcccchhhHHHHHHH
Q 000323 1166 HSLFLSDILTCLTISDKLIFWVCCV-----Y-LVIYRKL---PDA--VLQLLECEKELFAIDWP-PVQLEDDEKQRAIKL 1233 (1669)
Q Consensus 1166 ~~lSLsKi~~YLt~sDR~~AWL~~i-----Y-llrYrvL---PGd--~y~q~e~~KEAf~I~W~-y~~vlk~EPdnalAL 1233 (1669)
--+--...-||...-+|.+-|.|- | .-.+|-| |+. .|-+..+++.+|.. |- |-. ...|-|-|+..
T Consensus 858 -r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~W-WgqYlE-S~GemdaAl~~ 934 (1416)
T KOG3617|consen 858 -RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSW-WGQYLE-SVGEMDAALSF 934 (1416)
T ss_pred -hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHH-HHHHHh-cccchHHHHHH
Confidence 001223445566555555544432 2 2222222 222 25555555555655 43 322 33567888888
Q ss_pred HHHHHHHHhh-----hcCCcchhhhh---hhchhhHhHHHHHHHHHHhcCHHHHHHHHHHH------HHhCCCc------
Q 000323 1234 IEMAVNSVEL-----YSNGESLEKET---NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKY------IKLYPSC------ 1293 (1669)
Q Consensus 1234 ~smA~dYY~~-----~~ndesla~~~---~~kt~~~fKLN~IR~lI~LEDse~A~~Lfdkl------Lk~~P~d------ 1293 (1669)
.+.|-|||.. +.|+-+.+... +.+.+.|.-+ -|.|...|+..+|+..|.++ +.+|-++
T Consensus 935 Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhl--aR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L 1012 (1416)
T KOG3617|consen 935 YSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHL--ARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRL 1012 (1416)
T ss_pred HHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9998888875 22333333333 3333444433 24444455777776655443 3333221
Q ss_pred ---------hhHHHHHHHHhhccc-CCccHHHHHHH------HHhC--CCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000323 1294 ---------LELVLMKARLQKHDF-GDLSSVGFEEA------LIKW--PKGVPGIQCIWNQYVEYALQNGRHDFAAELMD 1355 (1669)
Q Consensus 1294 ---------~eL~L~AAyL~~K~m-~~~A~svle~A------L~~~--PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~ 1355 (1669)
-++..+|.|.+.+++ -..|+..|.+| |++. -.-.. =.|||---+..+.=.+.++=|.
T Consensus 1013 ~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~-----aL~lIa~DLd~~sDp~ll~Rca 1087 (1416)
T KOG3617|consen 1013 ANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFS-----ALDLIAKDLDAGSDPKLLRRCA 1087 (1416)
T ss_pred HHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccH-----HHHHHHHhcCCCCCHHHHHHHH
Confidence 234566778877763 55666655443 3222 11122 2466777777777777888888
Q ss_pred HHHHhhhhccc---------ccccchhhhcccCCCCCCCCC----CCCCcccccccccchhhHHHHHHHHHHHhhhcCHH
Q 000323 1356 RWFHSVWKVQY---------SQVEISDPLVADMSHSSPEST----STSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWN 1422 (1669)
Q Consensus 1356 ~ff~gia~~Q~---------~~deALDaLrkgns~i~~es~----s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~ 1422 (1669)
.||.....+++ ...+||.++...|-+++.+.. +.-.+||-...+. .+.-+++++..+ +|.+.
T Consensus 1088 dFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~---~vLeqvae~c~q--QG~Yh 1162 (1416)
T KOG3617|consen 1088 DFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERK---QVLEQVAELCLQ--QGAYH 1162 (1416)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHH---HHHHHHHHHHHh--ccchH
Confidence 89999999987 788888888877777765542 2112333322223 356889999999 99998
Q ss_pred HHHHHHHHH
Q 000323 1423 EARLAIDAA 1431 (1669)
Q Consensus 1423 EAfaAYDKA 1431 (1669)
-|-.-|-.|
T Consensus 1163 ~AtKKfTQA 1171 (1416)
T KOG3617|consen 1163 AATKKFTQA 1171 (1416)
T ss_pred HHHHHHhhh
Confidence 887766554
No 151
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.01 E-value=7.1 Score=49.65 Aligned_cols=388 Identities=11% Similarity=0.072 Sum_probs=208.0
Q ss_pred hhhhccchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCC
Q 000323 1002 KLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG 1081 (1669)
Q Consensus 1002 ~le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~ 1081 (1669)
.||..|.|...|-.|..-+=.+. ++++...|..-+...|.++.+|..|+.-.+..+.-+.+...|.+-+.-. -
T Consensus 12 rie~nP~di~sw~~lire~qt~~------~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv-L 84 (656)
T KOG1914|consen 12 RIEENPYDIDSWSQLIREAQTQP------IDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV-L 84 (656)
T ss_pred HHhcCCccHHHHHHHHHHHccCC------HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-h
Confidence 67889999999999888777773 4999999999999999999999999999888887777777777776544 4
Q ss_pred CHHHHHHHHhcCCCcccchhhH-HHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHH------HHHHhcCHHHHHHHHHh
Q 000323 1082 SYALWLMYINSRTPLNHRLDAY-DAALSVLCRCASASDGDEMHASACILDLFLQMLQ------CFCMSGNTEKAIQRISR 1154 (1669)
Q Consensus 1082 NY~LwlmYInsr~slddrl~~Y-dkAI~aLe~las~~~~Dr~~~Sa~iLDILL~Lvq------LY~qSGnydKAI~tl~r 1154 (1669)
|..||-+||.=-....+++.-| +...++|.=......-|. .|..|-+-+...+. =|..+.++++....+.|
T Consensus 85 nlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di--~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqr 162 (656)
T KOG1914|consen 85 NLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDI--KSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQR 162 (656)
T ss_pred hHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCc--ccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHH
Confidence 6779988886322222222121 233334422222221233 45544444443332 23344466655555555
Q ss_pred hcccccCCCCcccchHHHHH-Hhhcc--------CCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhcc----------
Q 000323 1155 LLIPATGSNDRHSLFLSDIL-TCLTI--------SDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAI---------- 1215 (1669)
Q Consensus 1155 LEq~Al~g~sE~~lSLsKi~-~YLt~--------sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I---------- 1215 (1669)
-.. .| -..|+++. .|.+- ..|-++-..-+|--..++.-.=-.+..|-...++.+
T Consensus 163 al~------tP-m~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~ 235 (656)
T KOG1914|consen 163 ALV------TP-MHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQ 235 (656)
T ss_pred Hhc------Cc-cccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHH
Confidence 554 44 44555655 33221 111111223333111111111112223322333333
Q ss_pred ---------CCCCcccch-hhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHH--H----------HHHH-HH
Q 000323 1216 ---------DWPPVQLED-DEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVN--H----------IWCM-AV 1272 (1669)
Q Consensus 1216 ---------~W~y~~vlk-~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN--~----------IR~l-I~ 1272 (1669)
.|.-..-++ .+-++...-+.-|+ +++..++... + +..+ ..
T Consensus 236 qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yay-----------------eQ~ll~l~~~peiWy~~s~yl~~~s~l~~~ 298 (656)
T KOG1914|consen 236 QVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAY-----------------EQCLLYLGYHPEIWYDYSMYLIEISDLLTE 298 (656)
T ss_pred HHHHHHHHHHHHhcCCcccccccHHHHHHHHHH-----------------HHHHHHHhcCHHHHHHHHHHHHHhhHHHHH
Confidence 333222222 11111111122111 1222222220 0 1111 11
Q ss_pred hcC-------HHHHHHHHHHHHHhCCCchhH--HHHHHHHh--hcccCCccH-HHHHHHHHhCCCCCchHHHHHHHHHHH
Q 000323 1273 LNG-------LECSMNLLEKYIKLYPSCLEL--VLMKARLQ--KHDFGDLSS-VGFEEALIKWPKGVPGIQCIWNQYVEY 1340 (1669)
Q Consensus 1273 LED-------se~A~~LfdklLk~~P~d~eL--~L~AAyL~--~K~m~~~A~-svle~AL~~~PkNa~g~~caW~QLIq~ 1340 (1669)
.+| .+++.+++++.+..--..-.+ ..++.|=+ .++...+.. ..+++++.+.-.+.. =.|.||+..
T Consensus 299 ~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t---Lv~~~~mn~ 375 (656)
T KOG1914|consen 299 KGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT---LVYCQYMNF 375 (656)
T ss_pred hcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc---eehhHHHHH
Confidence 122 556666666666543332222 33333311 111123344 777888877766665 267889999
Q ss_pred HHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHH-HHHHhhhc
Q 000323 1341 ALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNL-SLHRLLQN 1419 (1669)
Q Consensus 1341 al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD-~L~q~Lqg 1419 (1669)
+.+.++...|..|..+ |-+.-+ +. -++| ..-.. =||- .+
T Consensus 376 irR~eGlkaaR~iF~k--------------aR~~~r-~~------------hhVf-----------Va~A~mEy~c--sk 415 (656)
T KOG1914|consen 376 IRRAEGLKAARKIFKK--------------AREDKR-TR------------HHVF-----------VAAALMEYYC--SK 415 (656)
T ss_pred HHHhhhHHHHHHHHHH--------------HhhccC-Cc------------chhh-----------HHHHHHHHHh--cC
Confidence 9999999999988865 111001 00 1223 22222 2334 68
Q ss_pred CHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHH
Q 000323 1420 DWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLL 1471 (1669)
Q Consensus 1420 ~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~~~KtV 1471 (1669)
+.+=||..|+--|+.=++. -...+.|+-||+- |.+++.....|+.+
T Consensus 416 D~~~AfrIFeLGLkkf~d~--p~yv~~YldfL~~----lNdd~N~R~LFEr~ 461 (656)
T KOG1914|consen 416 DKETAFRIFELGLKKFGDS--PEYVLKYLDFLSH----LNDDNNARALFERV 461 (656)
T ss_pred ChhHHHHHHHHHHHhcCCC--hHHHHHHHHHHHH----hCcchhHHHHHHHH
Confidence 8889999999999988877 6677888888886 55666666655433
No 152
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.97 E-value=0.06 Score=62.05 Aligned_cols=108 Identities=12% Similarity=0.076 Sum_probs=91.1
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHH
Q 000323 1029 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1104 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~Yd 1104 (1669)
|+|..|...|.++.+.+|++.++|.-++-.|.+.+..++++..|.+|.++.|.+-. |+-.|+=.+ .++
T Consensus 114 g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~g--------d~~ 185 (257)
T COG5010 114 GNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRG--------DLE 185 (257)
T ss_pred cchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcC--------CHH
Confidence 77899999999999999999999999999999999999999999999999988766 443343334 469
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHH
Q 000323 1105 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRI 1152 (1669)
Q Consensus 1105 kAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl 1152 (1669)
.|...|.+.+..-+.| .-|..-|+-+....|+++.|-.++
T Consensus 186 ~A~~lll~a~l~~~ad--------~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 186 DAETLLLPAYLSPAAD--------SRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HHHHHHHHHHhCCCCc--------hHHHHHHHHHHhhcCChHHHHhhc
Confidence 9999998888776334 457777888889999999997744
No 153
>PRK11906 transcriptional regulator; Provisional
Probab=95.96 E-value=0.044 Score=67.39 Aligned_cols=94 Identities=16% Similarity=0.170 Sum_probs=76.1
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-----HHH-HHHhcCCCcccchhh
Q 000323 1029 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-----LWL-MYINSRTPLNHRLDA 1102 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-----Lwl-mYInsr~slddrl~~ 1102 (1669)
++++.|+.+|.+|+++||+.+.+||.++.+-.-.|..+++.+.+++|++++|--.. ||. ||-..+ +
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~------~-- 423 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP------L-- 423 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc------h--
Confidence 34799999999999999999999999999888888889999999999999997766 998 999888 3
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhh-hhHHHHHHHHHH
Q 000323 1103 YDAALSVLCRCASASDGDEMHASA-CILDLFLQMLQC 1138 (1669)
Q Consensus 1103 YdkAI~aLe~las~~~~Dr~~~Sa-~iLDILL~LvqL 1138 (1669)
+.||.+|-+..+.. |+ -|.|-+|.+-||
T Consensus 424 -~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 452 (458)
T PRK11906 424 -KNNIKLYYKETESE-------SHRVIIDNILKLKQL 452 (458)
T ss_pred -hhhHHHHhhccccc-------cchhhHHHHHHHHHH
Confidence 88999993332222 22 456766666655
No 154
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=95.89 E-value=0.97 Score=59.87 Aligned_cols=118 Identities=17% Similarity=0.167 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHHHH
Q 000323 1031 MKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAA 1106 (1669)
Q Consensus 1031 ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkA 1106 (1669)
...||..|=++|.+||+=+.+|..+++||.....-.-+..+|.+|.+++|..+. ++-+|.... ..+.|
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~--------~we~a 545 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEES--------TWEEA 545 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccc--------cHHHH
Confidence 588999999999999999999999999998777666688999999999998888 556676665 55555
Q ss_pred HHHHHHhhhcCCCCc----------------chh--------hh-----hhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1107 LSVLCRCASASDGDE----------------MHA--------SA-----CILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1107 I~aLe~las~~~~Dr----------------~~~--------Sa-----~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
..+.-+.+... +-. ... || -=...|+.+.+.|..+|+|.-|+.+.++.-.
T Consensus 546 ~~I~l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 546 FEICLRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred HHHHHHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 55532211111 000 001 11 1156788888888888888888886665554
No 155
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=95.83 E-value=0.032 Score=70.96 Aligned_cols=130 Identities=18% Similarity=0.102 Sum_probs=104.5
Q ss_pred HHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhc
Q 000323 1017 ALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINS 1092 (1669)
Q Consensus 1017 Al~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYIns 1092 (1669)
|..+++...-..++|.+|..-|.+.|++||--...||.+...+.+..+-..+.++|-++|.++|++.. |.-.||..
T Consensus 487 A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~ 566 (777)
T KOG1128|consen 487 AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRL 566 (777)
T ss_pred HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHH
Confidence 55665555544578899999999999999999999999999999999888899999999999999998 44556666
Q ss_pred CCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCC
Q 000323 1093 RTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGS 1162 (1669)
Q Consensus 1093 r~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g 1162 (1669)
+ +-.+|...+-++.+.+ -+. --+|.--+-+....|+++.||+.+-||+.-..++
T Consensus 567 ~--------~k~ra~~~l~EAlKcn-~~~-------w~iWENymlvsvdvge~eda~~A~~rll~~~~~~ 620 (777)
T KOG1128|consen 567 K--------KKKRAFRKLKEALKCN-YQH-------WQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKY 620 (777)
T ss_pred h--------hhHHHHHHHHHHhhcC-CCC-------CeeeechhhhhhhcccHHHHHHHHHHHHHhhhhc
Confidence 6 5578888887777766 444 5577777888889999999999999998643333
No 156
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.73 E-value=0.18 Score=60.29 Aligned_cols=234 Identities=15% Similarity=0.074 Sum_probs=125.7
Q ss_pred HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCC
Q 000323 1085 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND 1164 (1669)
Q Consensus 1085 LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~s 1164 (1669)
++..|-..+ +|++|+.+|..+....+++ -++++.|+=++..-|.|..|-+ |-..|.+ +
T Consensus 63 ia~C~fhLg--------dY~~Al~~Y~~~~~~~~~~--------~el~vnLAcc~FyLg~Y~eA~~----~~~ka~k--~ 120 (557)
T KOG3785|consen 63 IAHCYFHLG--------DYEEALNVYTFLMNKDDAP--------AELGVNLACCKFYLGQYIEAKS----IAEKAPK--T 120 (557)
T ss_pred HHHHHHhhc--------cHHHHHHHHHHHhccCCCC--------cccchhHHHHHHHHHHHHHHHH----HHhhCCC--C
Confidence 444555555 8999999998776654344 4556666666666788888866 3332222 2
Q ss_pred cccchHHHHH--HhhccCCcchhhHHHHH----HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHH
Q 000323 1165 RHSLFLSDIL--TCLTISDKLIFWVCCVY----LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAV 1238 (1669)
Q Consensus 1165 E~~lSLsKi~--~YLt~sDR~~AWL~~iY----llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~ 1238 (1669)
| .-.++. +-...+|.+. |+..-- -++-+.-++.+--..-..+||.++ |.+++.++|+....-+.||+
T Consensus 121 p---L~~RLlfhlahklndEk~-~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdv---YkrvL~dn~ey~alNVy~AL 193 (557)
T KOG3785|consen 121 P---LCIRLLFHLAHKLNDEKR-ILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDV---YKRVLQDNPEYIALNVYMAL 193 (557)
T ss_pred h---HHHHHHHHHHHHhCcHHH-HHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHH---HHHHHhcChhhhhhHHHHHH
Confidence 2 000111 1122233211 221110 001111112221122357899999 99999999998877778877
Q ss_pred HHHhhhcCC---cchhhhhhhchhhHhHHHHHHHHH--H-hc--CHHHHHHHHHHHHHhCCCchhHHHHHHHHhhcccCC
Q 000323 1239 NSVELYSNG---ESLEKETNLRSAHCFAVNHIWCMA--V-LN--GLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGD 1310 (1669)
Q Consensus 1239 dYY~~~~nd---esla~~~~~kt~~~fKLN~IR~lI--~-LE--Dse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m~~ 1310 (1669)
=||..+--+ +-+..-...--+.-+++|+..|.. . ++ --++..+|.+-+-+.+|.-.+| +--.|-.-.+.+
T Consensus 194 CyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l--~rHNLVvFrngE 271 (557)
T KOG3785|consen 194 CYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYL--CRHNLVVFRNGE 271 (557)
T ss_pred HHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHH--HHcCeEEEeCCc
Confidence 666642221 111111111122223333322221 1 22 2344455666666565543333 111122222367
Q ss_pred ccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000323 1311 LSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1356 (1669)
Q Consensus 1311 ~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ 1356 (1669)
.|..|+-..+..-|. +|.-||-+.++++|..+|+.||+.
T Consensus 272 gALqVLP~L~~~IPE-------ARlNL~iYyL~q~dVqeA~~L~Kd 310 (557)
T KOG3785|consen 272 GALQVLPSLMKHIPE-------ARLNLIIYYLNQNDVQEAISLCKD 310 (557)
T ss_pred cHHHhchHHHhhChH-------hhhhheeeecccccHHHHHHHHhh
Confidence 777887777777663 788889999999999999999998
No 157
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.64 E-value=0.19 Score=59.83 Aligned_cols=229 Identities=18% Similarity=0.126 Sum_probs=145.5
Q ss_pred HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCC
Q 000323 1085 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND 1164 (1669)
Q Consensus 1085 LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~s 1164 (1669)
++-.|+..+ .|-+|-..|-...+.+ +- .|.++.|.+.|..-..-..|+.+|..-+. .-
T Consensus 229 ~gkCylrLg--------m~r~AekqlqssL~q~-~~--------~dTfllLskvY~ridQP~~AL~~~~~gld-----~f 286 (478)
T KOG1129|consen 229 MGKCYLRLG--------MPRRAEKQLQSSLTQF-PH--------PDTFLLLSKVYQRIDQPERALLVIGEGLD-----SF 286 (478)
T ss_pred HHHHHHHhc--------ChhhhHHHHHHHhhcC-Cc--------hhHHHHHHHHHHHhccHHHHHHHHhhhhh-----cC
Confidence 455677777 7888888886666666 33 68888888888888888878775533221 11
Q ss_pred cccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhh
Q 000323 1165 RHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELY 1244 (1669)
Q Consensus 1165 E~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~ 1244 (1669)
| +++.|..=-+-++.--|...+++.+ |..++|-+|.|+-++..-|+.||=
T Consensus 287 P-------------------------~~VT~l~g~ARi~eam~~~~~a~~l---Yk~vlk~~~~nvEaiAcia~~yfY-- 336 (478)
T KOG1129|consen 287 P-------------------------FDVTYLLGQARIHEAMEQQEDALQL---YKLVLKLHPINVEAIACIAVGYFY-- 336 (478)
T ss_pred C-------------------------chhhhhhhhHHHHHHHHhHHHHHHH---HHHHHhcCCccceeeeeeeecccc--
Confidence 1 1222222222233333444555555 566666666666655544433332
Q ss_pred cCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH----HHHHHHHhhcccCCccHHHHHHHH
Q 000323 1245 SNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL----VLMKARLQKHDFGDLSSVGFEEAL 1320 (1669)
Q Consensus 1245 ~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL----~L~AAyL~~K~m~~~A~svle~AL 1320 (1669)
-+..|-|+..|.++|++--.+.+| -|++-|-+.- +-+.+-|++|+
T Consensus 337 ----------------------------~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~---D~~L~sf~RAl 385 (478)
T KOG1129|consen 337 ----------------------------DNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQI---DLVLPSFQRAL 385 (478)
T ss_pred ----------------------------CCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcch---hhhHHHHHHHH
Confidence 125666777788888888888877 6777664443 46678889998
Q ss_pred HhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCccccccccc
Q 000323 1321 IKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRN 1400 (1669)
Q Consensus 1321 ~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~ 1400 (1669)
+..-+..+ ..-+|+-|-..++.-||+..|.+-.+- +|-..+.+ ++
T Consensus 386 stat~~~~-aaDvWYNlg~vaV~iGD~nlA~rcfrl-----------------aL~~d~~h----------~e------- 430 (478)
T KOG1129|consen 386 STATQPGQ-AADVWYNLGFVAVTIGDFNLAKRCFRL-----------------ALTSDAQH----------GE------- 430 (478)
T ss_pred hhccCcch-hhhhhhccceeEEeccchHHHHHHHHH-----------------HhccCcch----------HH-------
Confidence 87654333 345899998899988888888765432 11111111 11
Q ss_pred chhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccC
Q 000323 1401 QMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAAS 1437 (1669)
Q Consensus 1401 Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~ 1437 (1669)
++-|++....-+|+..+|...|..|-..+|+
T Consensus 431 ------alnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 431 ------ALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred ------HHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 6666766666699999999999999988885
No 158
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.61 E-value=0.02 Score=48.41 Aligned_cols=42 Identities=24% Similarity=0.253 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000323 1011 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLL 1057 (1669)
Q Consensus 1011 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~ 1057 (1669)
+.|+.+|.-+...+ +++.|..+|+++|+.+|+++++|+.|+.
T Consensus 2 ~~~~~la~~~~~~G-----~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLG-----QPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 35666666666653 3477777777777777777777776654
No 159
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.53 E-value=0.14 Score=56.19 Aligned_cols=142 Identities=15% Similarity=0.153 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH--
Q 000323 1010 NEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPT---SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-- 1084 (1669)
Q Consensus 1010 ~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPt---SaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-- 1084 (1669)
.+.+...|...+.. |+|..|...|...+...|+ .+.+++.++..|+..+.-..+...|++-++..|.+-.
T Consensus 5 ~~~lY~~a~~~~~~-----g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~ 79 (203)
T PF13525_consen 5 AEALYQKALEALQQ-----GDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD 79 (203)
T ss_dssp HHHHHHHHHHHHHC-----T-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH
T ss_pred HHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence 45666777777776 5689999999999999987 5688999999999999999999999999999998765
Q ss_pred -----HHHHHHhcCCCc---ccchhhHHHHHHHHHHhhhcCCCCcchhh----------hhhHHHHHHHHHHHHHhcCHH
Q 000323 1085 -----LWLMYINSRTPL---NHRLDAYDAALSVLCRCASASDGDEMHAS----------ACILDLFLQMLQCFCMSGNTE 1146 (1669)
Q Consensus 1085 -----LwlmYInsr~sl---ddrl~~YdkAI~aLe~las~~~~Dr~~~S----------a~iLDILL~LvqLY~qSGnyd 1146 (1669)
+++.|.+..... .-+.....+|+..|..+...+ |+-.+.. -.+-+--+...++|...|.|.
T Consensus 80 ~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-P~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~ 158 (203)
T PF13525_consen 80 YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-PNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYK 158 (203)
T ss_dssp HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH--TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HH
T ss_pred hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 334443332112 333445678999999999999 4422221 133333466788888899999
Q ss_pred HHHHHHHhhcc
Q 000323 1147 KAIQRISRLLI 1157 (1669)
Q Consensus 1147 KAI~tl~rLEq 1157 (1669)
.|+.+++.+..
T Consensus 159 aA~~r~~~v~~ 169 (203)
T PF13525_consen 159 AAIIRFQYVIE 169 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888887775
No 160
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.52 E-value=0.036 Score=49.32 Aligned_cols=48 Identities=27% Similarity=0.456 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1102 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1102 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
.|++|+..|.++...+ |+. .++++.|+++|..+|++++|...+.++..
T Consensus 6 ~~~~A~~~~~~~l~~~-p~~-------~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 6 DYDEAIELLEKALQRN-PDN-------PEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHHHHHHHHHHHHHHT-TTS-------HHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred CHHHHHHHHHHHHHHC-CCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7999999999999999 566 89999999999999999999999988886
No 161
>PRK15331 chaperone protein SicA; Provisional
Probab=95.40 E-value=0.11 Score=56.74 Aligned_cols=118 Identities=14% Similarity=0.078 Sum_probs=94.2
Q ss_pred chHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH---
Q 000323 1008 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--- 1084 (1669)
Q Consensus 1008 ~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~--- 1084 (1669)
.+.+.|.+.-..-+..+.+ |.-...+.++.=+..|.++--+++.|+-.++..+|+-.+-++|.|+.
T Consensus 7 ~~~~~~~~~i~~al~~G~t-----------lk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~ 75 (165)
T PRK15331 7 VSEERVAEMIWDAVSEGAT-----------LKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTM 75 (165)
T ss_pred hhHHHHHHHHHHHHHCCCC-----------HHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence 4456666766777776654 66667788888888899999999999999999999999999998877
Q ss_pred -HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHH
Q 000323 1085 -LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRI 1152 (1669)
Q Consensus 1085 -LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl 1152 (1669)
|+..|.-.+ .|++|+.+|.-.+.-...| --+.+.+.+||.+-|+.++|+..+
T Consensus 76 GLaa~~Q~~k--------~y~~Ai~~Y~~A~~l~~~d--------p~p~f~agqC~l~l~~~~~A~~~f 128 (165)
T PRK15331 76 GLAAVCQLKK--------QFQKACDLYAVAFTLLKND--------YRPVFFTGQCQLLMRKAAKARQCF 128 (165)
T ss_pred HHHHHHHHHH--------HHHHHHHHHHHHHHcccCC--------CCccchHHHHHHHhCCHHHHHHHH
Confidence 777888888 9999999997666544223 336889999999999999999944
No 162
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.36 E-value=0.14 Score=59.19 Aligned_cols=140 Identities=19% Similarity=0.214 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000323 1277 ECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1356 (1669)
Q Consensus 1277 e~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ 1356 (1669)
..+..-+-......|.|.++..++.-+.+.+-.+.+..+..+++...|+....+.. ++...++.|++..|+...++
T Consensus 50 ~~a~~al~~~~~~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~----~gk~~~~~g~~~~A~~~~rk 125 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSIAKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAA----QGKNQIRNGNFGEAVSVLRK 125 (257)
T ss_pred hHHHHHHHHHHhcCcchHHHHHHHHHHHhcccccchHHHHhhhhccCcccHHHHHH----HHHHHHHhcchHHHHHHHHH
Confidence 34666777888899999999333333344433778889999999999998773322 68889999999998888755
Q ss_pred HHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhcc
Q 000323 1357 WFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAA 1436 (1669)
Q Consensus 1357 ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp 1436 (1669)
+.+ ..| . ...++ ..+|.+|-+ -|+.++|..+|-+||+..|
T Consensus 126 -----------------A~~--l~p--~------d~~~~-----------~~lgaaldq--~Gr~~~Ar~ay~qAl~L~~ 165 (257)
T COG5010 126 -----------------AAR--LAP--T------DWEAW-----------NLLGAALDQ--LGRFDEARRAYRQALELAP 165 (257)
T ss_pred -----------------Hhc--cCC--C------Chhhh-----------hHHHHHHHH--ccChhHHHHHHHHHHHhcc
Confidence 111 122 1 24456 778899999 9999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhcCCCCCCcccc
Q 000323 1437 SEHFKHCVREHAMLLLINESEPKEGAP 1463 (1669)
Q Consensus 1437 ~N~~i~cLNNYAYFLS~e~~dL~KAeq 1463 (1669)
.+ -..+||.+|-+.+++. +.+|+.
T Consensus 166 ~~--p~~~nNlgms~~L~gd-~~~A~~ 189 (257)
T COG5010 166 NE--PSIANNLGMSLLLRGD-LEDAET 189 (257)
T ss_pred CC--chhhhhHHHHHHHcCC-HHHHHH
Confidence 99 8899999999998873 444443
No 163
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.23 E-value=0.72 Score=53.75 Aligned_cols=181 Identities=14% Similarity=0.081 Sum_probs=117.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCchhH-HHHHHH
Q 000323 1225 DEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAV-LNGLECSMNLLEKYIKLYPSCLEL-VLMKAR 1302 (1669)
Q Consensus 1225 ~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~-LEDse~A~~LfdklLk~~P~d~eL-~L~AAy 1302 (1669)
-.|+.++++.+--..|+... + ..-+..+-+.++-+... .+...-|....+++-..-|.+.-+ -|+|-+
T Consensus 26 rnseevv~l~~~~~~~~k~~-----~-----~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~ 95 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSG-----A-----LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAML 95 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhc-----c-----cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 46788888886534455431 0 12224444442222222 447777777888888888999999 899999
Q ss_pred HhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccc-------------ccc
Q 000323 1303 LQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQY-------------SQV 1369 (1669)
Q Consensus 1303 L~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~-------------~~d 1369 (1669)
|+.+++-++|+..|+..|+.+|.|.. ++-.=|-....+|+--.||+-...|..-|.-.+. ...
T Consensus 96 lEa~~~~~~A~e~y~~lL~ddpt~~v----~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~ 171 (289)
T KOG3060|consen 96 LEATGNYKEAIEYYESLLEDDPTDTV----IRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFE 171 (289)
T ss_pred HHHhhchhhHHHHHHHHhccCcchhH----HHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHH
Confidence 99988888999999999999999988 4444466677777878888888887666655543 222
Q ss_pred cchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhc---CHHHHHHHHHHHHhhccCC
Q 000323 1370 EISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQN---DWNEARLAIDAALKAAASE 1438 (1669)
Q Consensus 1370 eALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg---~~~EAfaAYDKALkanp~N 1438 (1669)
.|.=-+..-+ +..|.+- +.|.-+++.+|. +| ++.-|..-|++||+.+|.+
T Consensus 172 kA~fClEE~l---------------l~~P~n~--l~f~rlae~~Yt--~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 172 KAAFCLEELL---------------LIQPFNP--LYFQRLAEVLYT--QGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred HHHHHHHHHH---------------HcCCCcH--HHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHhChHh
Confidence 2222222110 0111111 457788887776 55 4556778888888888865
No 164
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.17 E-value=0.034 Score=47.06 Aligned_cols=43 Identities=5% Similarity=0.172 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHh
Q 000323 1049 EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYIN 1091 (1669)
Q Consensus 1049 aeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYIn 1091 (1669)
+++|+.|+..|...|+..++.++|+++|+.+|+|...|.++..
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 5789999999999999999999999999999999999988753
No 165
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.06 E-value=0.27 Score=53.98 Aligned_cols=128 Identities=14% Similarity=0.154 Sum_probs=97.1
Q ss_pred hhhccchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhCCCC-----------chH
Q 000323 1003 LKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSE---ILWITYLLIFYSNTNS-----------VGK 1068 (1669)
Q Consensus 1003 le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSa---eaWy~yl~lY~~~~~~-----------eea 1068 (1669)
--.++.-.+.++.+|..+... |+|+.|...|.+-++.+|+++ .++|..+..++....+ ..+
T Consensus 35 ~P~s~~a~~A~l~la~a~y~~-----~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A 109 (203)
T PF13525_consen 35 YPNSPYAPQAQLMLAYAYYKQ-----GDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKA 109 (203)
T ss_dssp -TTSTTHHHHHHHHHHHHHHT-----T-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHH
Confidence 333455557778888877766 568999999999999999966 5788887776654322 247
Q ss_pred HHHHHHHHhhCCCCHH---------------------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhh
Q 000323 1069 DDMFSYSVKHNEGSYA---------------------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASAC 1127 (1669)
Q Consensus 1069 ~emlekAVelnP~NY~---------------------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~ 1127 (1669)
...|+.-|+.-|++.. ++.+|.+.+ .|..|+.-+..+...+ |+ |-.
T Consensus 110 ~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~--------~y~aA~~r~~~v~~~y-p~----t~~ 176 (203)
T PF13525_consen 110 IEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRG--------KYKAAIIRFQYVIENY-PD----TPA 176 (203)
T ss_dssp HHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT---------HHHHHHHHHHHHHHS-TT----SHH
T ss_pred HHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--------cHHHHHHHHHHHHHHC-CC----Cch
Confidence 7899999999998865 678888888 9999999999999999 55 356
Q ss_pred hHHHHHHHHHHHHHhcCHHHH
Q 000323 1128 ILDLFLQMLQCFCMSGNTEKA 1148 (1669)
Q Consensus 1128 iLDILL~LvqLY~qSGnydKA 1148 (1669)
..|.+..|+..|..-|..+.|
T Consensus 177 ~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 177 AEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHHhCChHHH
Confidence 789999999999999998844
No 166
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.84 E-value=0.022 Score=46.58 Aligned_cols=32 Identities=9% Similarity=0.204 Sum_probs=27.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhCCCCchH
Q 000323 1037 LLSRALEADPTSEILWITYLLIFYSNTNSVGK 1068 (1669)
Q Consensus 1037 LLsrALEINPtSaeaWy~yl~lY~~~~~~eea 1068 (1669)
.|.+|||+||+++.+|+.|+.+|...|..+++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 37899999999999999999999988875544
No 167
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=94.66 E-value=0.73 Score=52.52 Aligned_cols=129 Identities=13% Similarity=0.061 Sum_probs=98.4
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhCC---------------CC---chHH
Q 000323 1011 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSE---ILWITYLLIFYSNT---------------NS---VGKD 1069 (1669)
Q Consensus 1011 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSa---eaWy~yl~lY~~~~---------------~~---eea~ 1069 (1669)
+..+.+|.-++.. ++|+.|...|++.++.+|+++ .++|.++..+...+ +. ..+.
T Consensus 70 ~a~l~la~ayy~~-----~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~ 144 (243)
T PRK10866 70 QVQLDLIYAYYKN-----ADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAF 144 (243)
T ss_pred HHHHHHHHHHHhc-----CCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHH
Confidence 4556666666665 457999999999999999865 45666665432221 01 2356
Q ss_pred HHHHHHHhhCCCCHH---------------------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhh
Q 000323 1070 DMFSYSVKHNEGSYA---------------------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACI 1128 (1669)
Q Consensus 1070 emlekAVelnP~NY~---------------------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~i 1128 (1669)
+.|+.-|+.-|++-. ++-+|.+.+ .|..|+.-+..+...+ |+ |-..
T Consensus 145 ~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~--------~y~AA~~r~~~v~~~Y-p~----t~~~ 211 (243)
T PRK10866 145 RDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRG--------AYVAVVNRVEQMLRDY-PD----TQAT 211 (243)
T ss_pred HHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------chHHHHHHHHHHHHHC-CC----CchH
Confidence 889999999998876 566788877 8999999999999998 44 3456
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1129 LDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1129 LDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
.|.|..|+.-|...|..+.|..++..|..
T Consensus 212 ~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 212 RDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 99999999999999999999887766653
No 168
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=0.47 Score=57.99 Aligned_cols=185 Identities=18% Similarity=0.070 Sum_probs=131.7
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHHH
Q 000323 1029 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALS 1108 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~ 1108 (1669)
+.|+.|.++=-+.|..|++++++.|.-..++|...+-..+...|++|+.++|+-+..-.+|..-+
T Consensus 183 ~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k--------------- 247 (486)
T KOG0550|consen 183 GDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPK--------------- 247 (486)
T ss_pred ccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHH---------------
Confidence 56799999999999999999999999999988888888899999999999999999888887666
Q ss_pred HHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHH
Q 000323 1109 VLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVC 1188 (1669)
Q Consensus 1109 aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~ 1188 (1669)
.|+..-.+ . .-...+|+|.+|-..+ ..|+.. +| +.+ .-++
T Consensus 248 ~le~~k~~---g----------------N~~fk~G~y~~A~E~Y----teal~i-dP--------------~n~--~~na 287 (486)
T KOG0550|consen 248 KLEVKKER---G----------------NDAFKNGNYRKAYECY----TEALNI-DP--------------SNK--KTNA 287 (486)
T ss_pred HHHHHHhh---h----------------hhHhhccchhHHHHHH----HHhhcC-Cc--------------ccc--chhH
Confidence 22222111 1 1234689999998743 333442 44 122 1122
Q ss_pred HHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHH
Q 000323 1189 CVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIW 1268 (1669)
Q Consensus 1189 ~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR 1268 (1669)
..|. . .+-+....++.+||+.- +..+++.||...-+++-- -+
T Consensus 288 klY~----n-ra~v~~rLgrl~eaisd---c~~Al~iD~syikall~r------------------------------a~ 329 (486)
T KOG0550|consen 288 KLYG----N-RALVNIRLGRLREAISD---CNEALKIDSSYIKALLRR------------------------------AN 329 (486)
T ss_pred HHHH----H-hHhhhcccCCchhhhhh---hhhhhhcCHHHHHHHHHH------------------------------HH
Confidence 2221 1 12334456777888876 677777777777777654 35
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcc
Q 000323 1269 CMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHD 1307 (1669)
Q Consensus 1269 ~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~ 1307 (1669)
|++++|+++.|++-|.++|+.-.+ +++ +|.-+-+..|+
T Consensus 330 c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkk 369 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKK 369 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHH
Confidence 677889999999999999999988 666 66666655553
No 169
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.25 E-value=0.1 Score=64.17 Aligned_cols=66 Identities=14% Similarity=-0.013 Sum_probs=58.8
Q ss_pred HhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCH-------HHHHHHHhcCCCcccchhhHHHHHHHHHHhhh
Q 000323 1043 EADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY-------ALWLMYINSRTPLNHRLDAYDAALSVLCRCAS 1115 (1669)
Q Consensus 1043 EINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY-------~LwlmYInsr~slddrl~~YdkAI~aLe~las 1115 (1669)
+.+|+.+++|+.++..|+..+..+++.++|++|++++|++. .++..|..++ .+++|+..|.++.+
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LG--------r~dEAla~LrrALe 140 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYRE--------EGKKAADCLRTALR 140 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999963 4999999999 77888888877766
Q ss_pred c
Q 000323 1116 A 1116 (1669)
Q Consensus 1116 ~ 1116 (1669)
.
T Consensus 141 l 141 (453)
T PLN03098 141 D 141 (453)
T ss_pred h
Confidence 4
No 170
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=0.4 Score=59.92 Aligned_cols=87 Identities=11% Similarity=0.085 Sum_probs=74.4
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHH----HHHHhcCCCcccchh
Q 000323 1026 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALW----LMYINSRTPLNHRLD 1101 (1669)
Q Consensus 1026 n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~Lw----lmYInsr~slddrl~ 1101 (1669)
++.|+|..|...|..||.-+|+++.+|+..+..|...+....+..-++++++++|.....| ..+.-.+
T Consensus 369 Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk-------- 440 (539)
T KOG0548|consen 369 FKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMK-------- 440 (539)
T ss_pred HhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH--------
Confidence 6789999999999999999999999999999999999999999999999999998776632 2222333
Q ss_pred hHHHHHHHHHHhhhcCCCCc
Q 000323 1102 AYDAALSVLCRCASASDGDE 1121 (1669)
Q Consensus 1102 ~YdkAI~aLe~las~~~~Dr 1121 (1669)
.|++|++.|.+..... |+.
T Consensus 441 ~ydkAleay~eale~d-p~~ 459 (539)
T KOG0548|consen 441 EYDKALEAYQEALELD-PSN 459 (539)
T ss_pred HHHHHHHHHHHHHhcC-chh
Confidence 7999999998887776 554
No 171
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.98 E-value=0.08 Score=41.33 Aligned_cols=34 Identities=12% Similarity=0.175 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCC
Q 000323 1049 EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1082 (1669)
Q Consensus 1049 aeaWy~yl~lY~~~~~~eea~emlekAVelnP~N 1082 (1669)
|++|+.++.+|+..++-.++.+.|++|++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 5789999999999999999999999999999875
No 172
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=93.81 E-value=0.19 Score=45.39 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=49.0
Q ss_pred HHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCc
Q 000323 1056 LLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDE 1121 (1669)
Q Consensus 1056 l~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr 1121 (1669)
..+|.+.+.-+.+.+.++++++++|++.. .+.+|...+ .|.+|+..|++..+.. |+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g--------~~~~A~~~l~~~l~~~-p~~ 62 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLG--------RYEEALEDLERALELS-PDD 62 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhc--------cHHHHHHHHHHHHHHC-CCc
Confidence 46778888889999999999999999988 456777777 8999999999999888 554
No 173
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.59 E-value=0.54 Score=57.32 Aligned_cols=92 Identities=15% Similarity=0.174 Sum_probs=69.2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Q 000323 1264 VNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYA 1341 (1669)
Q Consensus 1264 LN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~a 1341 (1669)
+|+..|++-+.+..+|+..|.++|+..|.++.- .=--++|.+.. -+.|+..|++|+..+|.|.. +..||+.+.
T Consensus 261 lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e-~~~A~~df~ka~k~~P~Nka----~~~el~~l~ 335 (397)
T KOG0543|consen 261 LNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGE-YDLARDDFQKALKLEPSNKA----ARAELIKLK 335 (397)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhcc-HHHHHHHHHHHHHhCCCcHH----HHHHHHHHH
Confidence 377777777889999999999999999999987 33334455554 77999999999999999998 998888877
Q ss_pred HHcCChHHHHHHHHHHHHhhhh
Q 000323 1342 LQNGRHDFAAELMDRWFHSVWK 1363 (1669)
Q Consensus 1342 l~~en~d~Ai~Lc~~ff~gia~ 1363 (1669)
.+-..+... -+++|..++.
T Consensus 336 ~k~~~~~~k---ekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEK---EKKMYANMFA 354 (397)
T ss_pred HHHHHHHHH---HHHHHHHHhh
Confidence 654333332 2334555443
No 174
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=93.55 E-value=0.64 Score=54.90 Aligned_cols=134 Identities=18% Similarity=0.220 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHhhcccCCccH-HHHHHHHHhCCCCCchHHHHHHHHHHHHHHc---CChHHHHH
Q 000323 1277 ECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSS-VGFEEALIKWPKGVPGIQCIWNQYVEYALQN---GRHDFAAE 1352 (1669)
Q Consensus 1277 e~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m~~~A~-svle~AL~~~PkNa~g~~caW~QLIq~al~~---en~d~Ai~ 1352 (1669)
+.-+.+++++|+.+|.+..|++....+-.+-.+.+.+ .-|+.++...|++.. +|..||.+.... -.++.+..
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~----LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPE----LWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChH----HHHHHHHHHHHHhccCcHHHHHH
Confidence 4567899999999999999965544443332244444 899999999999999 999999988874 24556666
Q ss_pred HHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHH
Q 000323 1353 LMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAAL 1432 (1669)
Q Consensus 1353 Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKAL 1432 (1669)
+..+.+..+....... ..++ .-..+ ....++..++..|.+.+--|-.+.|++++...|
T Consensus 124 ~y~~~l~~L~~~~~~~---------~~~~-------~~~~~------~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~l 181 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGR---------MTSH-------PDLPE------LEEFMLYVFLRLCRFLRQAGYTERAVALWQALL 181 (321)
T ss_pred HHHHHHHHHHHhhccc---------cccc-------cchhh------HHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHH
Confidence 6555443333222211 0011 00111 123355677777888888999999999998888
Q ss_pred hhcc
Q 000323 1433 KAAA 1436 (1669)
Q Consensus 1433 kanp 1436 (1669)
..|=
T Consensus 182 E~n~ 185 (321)
T PF08424_consen 182 EFNF 185 (321)
T ss_pred HHHc
Confidence 7764
No 175
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=93.54 E-value=0.54 Score=48.77 Aligned_cols=90 Identities=18% Similarity=0.164 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcc
Q 000323 1050 ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEM 1122 (1669)
Q Consensus 1050 eaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~ 1122 (1669)
+++|+++..|-..|..+++...|++|++.-..... |+..|.+.+ .|++|+.+|.+....+|.+-
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG--------~~deA~~~L~~~~~~~p~~~- 72 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLG--------RYDEALALLEEALEEFPDDE- 72 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHCCCcc-
Confidence 45666666666666666666666666665444332 445555555 56666666666666552211
Q ss_pred hhhhhhHHHHHHHHHHHHHhcCHHHHHHHH
Q 000323 1123 HASACILDLFLQMLQCFCMSGNTEKAIQRI 1152 (1669)
Q Consensus 1123 ~~Sa~iLDILL~LvqLY~qSGnydKAI~tl 1152 (1669)
.+.. +.+++.| .+...|+++.|+..+
T Consensus 73 -~~~~-l~~f~Al--~L~~~gr~~eAl~~~ 98 (120)
T PF12688_consen 73 -LNAA-LRVFLAL--ALYNLGRPKEALEWL 98 (120)
T ss_pred -ccHH-HHHHHHH--HHHHCCCHHHHHHHH
Confidence 1111 2233332 445556666666644
No 176
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.44 E-value=0.8 Score=54.82 Aligned_cols=128 Identities=15% Similarity=0.155 Sum_probs=97.7
Q ss_pred chHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH---
Q 000323 1008 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--- 1084 (1669)
Q Consensus 1008 ~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~--- 1084 (1669)
.|.=+.|..++.++.|. ..||.++...|+..|.+....+..+.++-.+++-+++.++|..++++.|.|..
T Consensus 256 ~dTfllLskvY~ridQP-------~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiA 328 (478)
T KOG1129|consen 256 PDTFLLLSKVYQRIDQP-------ERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIA 328 (478)
T ss_pred hhHHHHHHHHHHHhccH-------HHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeee
Confidence 34456667777778776 78999999999999999999999999999999999999999999999999888
Q ss_pred ---HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhccccc
Q 000323 1085 ---LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPAT 1160 (1669)
Q Consensus 1085 ---LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al 1160 (1669)
...+|=+.- +-|+..|-+...---.. -+++.-+-=|-.-.+.||-++..+.|-+.+|.
T Consensus 329 cia~~yfY~~~P----------E~AlryYRRiLqmG~~s--------peLf~NigLCC~yaqQ~D~~L~sf~RAlstat 389 (478)
T KOG1129|consen 329 CIAVGYFYDNNP----------EMALRYYRRILQMGAQS--------PELFCNIGLCCLYAQQIDLVLPSFQRALSTAT 389 (478)
T ss_pred eeeeccccCCCh----------HHHHHHHHHHHHhcCCC--------hHHHhhHHHHHHhhcchhhhHHHHHHHHhhcc
Confidence 334555555 88888887654421011 34555555444455678989988887776554
No 177
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=93.29 E-value=1.2 Score=56.30 Aligned_cols=129 Identities=10% Similarity=0.016 Sum_probs=90.5
Q ss_pred hhhhccchHHHHHHHHHHHhcccc---cchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 000323 1002 KLKQVELSNEQCVEMALLILNQDA---NKLEGMKKALSLLSRALEA--DPTSEILWITYLLIFYSNTNSVGKDDMFSYSV 1076 (1669)
Q Consensus 1002 ~le~~~~d~qlWLelAl~~Lnq~~---n~~g~ydAALdLLsrALEI--NPtSaeaWy~yl~lY~~~~~~eea~emlekAV 1076 (1669)
-++..|.....|-.+|.-+..... ...+.+.+|...+.+++++ +|..+.+|..++......++.+++..+|++|+
T Consensus 368 Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl 447 (517)
T PRK10153 368 ILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAI 447 (517)
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 344555666777777665544322 2235678888888888885 88899999999888888888999999999999
Q ss_pred hhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHH
Q 000323 1077 KHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAI 1149 (1669)
Q Consensus 1077 elnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI 1149 (1669)
+++| +.. ++..|.-.+ .+++|++.|.++..-.|.+. -+++.+=..+.-|++...
T Consensus 448 ~L~p-s~~a~~~lG~~~~~~G--------~~~eA~~~~~~A~~L~P~~p----------t~~~~~~~~f~~~~~~~~ 505 (517)
T PRK10153 448 DLEM-SWLNYVLLGKVYELKG--------DNRLAADAYSTAFNLRPGEN----------TLYWIENLVFQTSVETVV 505 (517)
T ss_pred HcCC-CHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhcCCCCc----------hHHHHHhccccccHHHHH
Confidence 9998 433 445555577 78999999999888774432 244444444445554443
No 178
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=93.22 E-value=0.22 Score=58.13 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=84.6
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH--HHHHHHh--cCCCcccchhhHH
Q 000323 1029 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--LWLMYIN--SRTPLNHRLDAYD 1104 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~--LwlmYIn--sr~slddrl~~Yd 1104 (1669)
|+++.|+.+|..+ .+.|+.....++|..++....+..+++.+-+.+.++.- |+.-|++ .+ + ..|.
T Consensus 116 ~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g---~---e~~~ 184 (290)
T PF04733_consen 116 GDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATG---G---EKYQ 184 (290)
T ss_dssp CHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHT---T---TCCC
T ss_pred CCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhC---c---hhHH
Confidence 6789999999875 67888888889999999999999999999999876665 4444444 44 1 2679
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Q 000323 1105 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1156 (1669)
Q Consensus 1105 kAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLE 1156 (1669)
+|.-+|+++...++ .. ..++.-++-++.+.|+|+.|...|..-.
T Consensus 185 ~A~y~f~El~~~~~-~t-------~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 185 DAFYIFEELSDKFG-ST-------PKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp HHHHHHHHHHCCS---S-------HHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccC-CC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999998883 43 6778899999999999999999665533
No 179
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.20 E-value=0.1 Score=41.30 Aligned_cols=34 Identities=0% Similarity=0.024 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCC
Q 000323 1049 EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1082 (1669)
Q Consensus 1049 aeaWy~yl~lY~~~~~~eea~emlekAVelnP~N 1082 (1669)
+.+|+.++.+|..++.-.++.+.|++|++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 5688899999999998888999999999998864
No 180
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=93.16 E-value=0.52 Score=54.49 Aligned_cols=106 Identities=16% Similarity=0.091 Sum_probs=79.3
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchh
Q 000323 1026 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLD 1101 (1669)
Q Consensus 1026 n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~ 1101 (1669)
.....|+.|.+-|.+||-+||+.+.-|..-+..|.+++.=+.+.+-|.+|+++.|+.-- |.+-.+.+.
T Consensus 21 f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~-------- 92 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK-------- 92 (284)
T ss_pred cchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc--------
Confidence 34678999999999999999999999999999999998888889999999999975433 555555566
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHh
Q 000323 1102 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMS 1142 (1669)
Q Consensus 1102 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qS 1142 (1669)
.|+.||..|-++++.. .. +.=-..+|+..+|...--+-
T Consensus 93 ~~~eaI~~Lqra~sl~-r~--~~~~~~~di~~~L~~ak~~~ 130 (284)
T KOG4642|consen 93 GYDEAIKVLQRAYSLL-RE--QPFTFGDDIPKALRDAKKKR 130 (284)
T ss_pred cccHHHHHHHHHHHHH-hc--CCCCCcchHHHHHHHHHhCc
Confidence 7899999997775422 00 00012367777776544333
No 181
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=93.00 E-value=6.3 Score=49.49 Aligned_cols=101 Identities=13% Similarity=0.079 Sum_probs=88.2
Q ss_pred HHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHH----HHHHhcCCCcccchhhHHHHHHHHHHhhhc
Q 000323 1041 ALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALW----LMYINSRTPLNHRLDAYDAALSVLCRCASA 1116 (1669)
Q Consensus 1041 ALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~Lw----lmYInsr~slddrl~~YdkAI~aLe~las~ 1116 (1669)
....+|.-.++||-.+.-++..++..++...+..-++.-|+|-|+| .+|+... .+.+|++.|.++.+.
T Consensus 298 ~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~n--------k~~~A~e~~~kal~l 369 (484)
T COG4783 298 AKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEAN--------KAKEAIERLKKALAL 369 (484)
T ss_pred HHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHhc
Confidence 3344499999999999999999999999999999999999999965 5677777 789999999999998
Q ss_pred CCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1117 SDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1117 ~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
. |+. .=+.+.+.+.|...|+.++||..|++..-
T Consensus 370 ~-P~~-------~~l~~~~a~all~~g~~~eai~~L~~~~~ 402 (484)
T COG4783 370 D-PNS-------PLLQLNLAQALLKGGKPQEAIRILNRYLF 402 (484)
T ss_pred C-CCc-------cHHHHHHHHHHHhcCChHHHHHHHHHHhh
Confidence 8 665 55778889999999999999998888874
No 182
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.89 E-value=2.7 Score=52.22 Aligned_cols=90 Identities=16% Similarity=0.162 Sum_probs=69.1
Q ss_pred HhcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHH
Q 000323 1272 VLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFA 1350 (1669)
Q Consensus 1272 ~LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~A 1350 (1669)
..+|..-|-..|...|...|++.-. .-+..||-..+....|+..|+.++..--+. + .-.+|.-.|.++-.=|++..|
T Consensus 444 ~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~-q-~k~iy~kmi~YEs~~G~lN~v 521 (660)
T COG5107 444 ATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKT-Q-LKRIYDKMIEYESMVGSLNNV 521 (660)
T ss_pred hcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHh-h-hhHHHHHHHHHHHhhcchHHH
Confidence 3446667777899999999988877 666667655543667889999888766665 1 123888889999999999999
Q ss_pred HHHHHHHHHhhhh
Q 000323 1351 AELMDRWFHSVWK 1363 (1669)
Q Consensus 1351 i~Lc~~ff~gia~ 1363 (1669)
+.|-++|+.-++.
T Consensus 522 ~sLe~rf~e~~pQ 534 (660)
T COG5107 522 YSLEERFRELVPQ 534 (660)
T ss_pred HhHHHHHHHHcCc
Confidence 9999998876543
No 183
>PRK04841 transcriptional regulator MalT; Provisional
Probab=92.57 E-value=4.4 Score=53.08 Aligned_cols=120 Identities=12% Similarity=-0.104 Sum_probs=78.4
Q ss_pred hhhHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCC---HH-------HHHHHHhc
Q 000323 1028 LEGMKKALSLLSRALEADPTSE-----ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS---YA-------LWLMYINS 1092 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSa-----eaWy~yl~lY~~~~~~eea~emlekAVelnP~N---Y~-------LwlmYIns 1092 (1669)
.|+++.|...+.++++..|... .++..++.++...+...++..+|++|++..... +. ++.+|...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 3678999999999999766533 355667777888888888999999999764321 11 45566666
Q ss_pred CCCcccchhhHHHHHHHHHHhhhcCC--CCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1093 RTPLNHRLDAYDAALSVLCRCASASD--GDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1093 r~slddrl~~YdkAI~aLe~las~~~--~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
+ .++.|+..+.+...... ... .+....-+...+..++...|+++.|+..+.+...
T Consensus 545 G--------~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~ 601 (903)
T PRK04841 545 G--------FLQAAYETQEKAFQLIEEQHLE--QLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLE 601 (903)
T ss_pred C--------CHHHHHHHHHHHHHHHHHhccc--cccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHH
Confidence 6 66777777766443210 010 0111111234567778888999999986665543
No 184
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.42 E-value=2.6 Score=40.70 Aligned_cols=115 Identities=20% Similarity=0.282 Sum_probs=87.9
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHhCCCCchHHHHHHHHHhhCCC--CHH-----HHHHHHhcCCCcccc
Q 000323 1028 LEGMKKALSLLSRALEADPTSEILWITYLL-IFYSNTNSVGKDDMFSYSVKHNEG--SYA-----LWLMYINSRTPLNHR 1099 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSaeaWy~yl~-lY~~~~~~eea~emlekAVelnP~--NY~-----LwlmYInsr~slddr 1099 (1669)
.+.+..|+.++..+++.++.....+..+.. +|...+.-..+...|++|+..+|. .+. +..+|....
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 181 (291)
T COG0457 108 LGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALG------ 181 (291)
T ss_pred HhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhc------
Confidence 355789999999999999998776777666 788888888899999999887763 333 222233333
Q ss_pred hhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1100 LDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1100 l~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
.++.|+..+.+.....+... ...+..+...|...+.+++|+..+.+...
T Consensus 182 --~~~~a~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 182 --RYEEALELLEKALKLNPDDD-------AEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred --CHHHHHHHHHHHHhhCcccc-------hHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 78999999988888773312 67888899999999999999997766664
No 185
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.38 E-value=0.48 Score=54.22 Aligned_cols=117 Identities=15% Similarity=0.195 Sum_probs=73.2
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH--HHHHHHhcCCCcccchhhHH
Q 000323 1027 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--LWLMYINSRTPLNHRLDAYD 1104 (1669)
Q Consensus 1027 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~--LwlmYInsr~slddrl~~Yd 1104 (1669)
-.|+||+|++.|.-.||.||+..=+...-+.-+|--+....+++-|.+-.+-+|.+-. ||++.+.++ ++ =.
T Consensus 111 ~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k--~d-----P~ 183 (297)
T COG4785 111 QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQK--LD-----PK 183 (297)
T ss_pred hcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhh--CC-----HH
Confidence 3477899999999999999986554444433333444566777777777777776544 655444333 22 12
Q ss_pred HHHHHHHHh-----------------------------hhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHH
Q 000323 1105 AALSVLCRC-----------------------------ASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQ 1150 (1669)
Q Consensus 1105 kAI~aLe~l-----------------------------as~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ 1150 (1669)
+|..-|-+. +.++..+++...-.+++..+++.+.|.+.|..+.|..
T Consensus 184 ~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~ 258 (297)
T COG4785 184 QAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATA 258 (297)
T ss_pred HHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 333333222 3333234444555778888888888888888888876
No 186
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.23 E-value=0.24 Score=38.68 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHhhccCC
Q 000323 1407 GYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1438 (1669)
Q Consensus 1407 a~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N 1438 (1669)
-.||.+++. .|++++|..+|++||..+|+|
T Consensus 5 ~~lg~~~~~--~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 5 YYLGQAYYQ--LGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHH--TT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHH--hCCHHHHHHHHHHHHHHCcCC
Confidence 578888888 999999999999999999975
No 187
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=92.07 E-value=7.8 Score=51.19 Aligned_cols=278 Identities=10% Similarity=0.033 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHHHHHH
Q 000323 1032 KKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLC 1111 (1669)
Q Consensus 1032 dAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~aLe 1111 (1669)
+.-+-.|..-+.||+-+-.+...|..+.-..+..+.....=+.+++..|-+-+||+-|+..+.....-. .-..+...++
T Consensus 96 ~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~-~~~~v~~~~e 174 (881)
T KOG0128|consen 96 NQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSE-ERKEVEELFE 174 (881)
T ss_pred hhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCc-chhHHHHHHH
Confidence 333444555566666665555555555556666555666666667777777777777777664333221 2233444444
Q ss_pred HhhhcCCCCcchhhhhhHHHHHHHHHHHH---HhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHH
Q 000323 1112 RCASASDGDEMHASACILDLFLQMLQCFC---MSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVC 1188 (1669)
Q Consensus 1112 ~las~~~~Dr~~~Sa~iLDILL~LvqLY~---qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~ 1188 (1669)
++...+ -+ .+-| +|+..+++.+-. .++.|++......+.+. ..|. | ++ +--++.++.-.-|+.|||
T Consensus 175 kal~dy-~~---v~iw-~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~--s~g~--~-~t-~G~~~we~~~E~e~~~l~ 243 (881)
T KOG0128|consen 175 KALGDY-NS---VPIW-EEVVNYLVGFGNVAKKSEDYKKERSVFERALR--SLGS--H-IT-EGAAIWEMYREFEVTYLC 243 (881)
T ss_pred HHhccc-cc---chHH-HHHHHHHHhccccccccccchhhhHHHHHHHh--hhhh--h-hc-ccHHHHHHHHHHHHHHHH
Confidence 443333 11 1111 344444444433 34566666664444443 1110 0 00 011112222222333444
Q ss_pred HHHHHHhhccchHHHhhhhhhhhhhccCCC--------CcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhh
Q 000323 1189 CVYLVIYRKLPDAVLQLLECEKELFAIDWP--------PVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAH 1260 (1669)
Q Consensus 1189 ~iYllrYrvLPGd~y~q~e~~KEAf~I~W~--------y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~ 1260 (1669)
..- -+.+-.-+-..+.++-......|. +..+..-.+++++.-... +.++. .+..+
T Consensus 244 n~~---~~qv~a~~~~el~~~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~-~~~~~-------------e~~~q 306 (881)
T KOG0128|consen 244 NVE---QRQVIALFVRELKQPLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAK-ILFKF-------------ERLVQ 306 (881)
T ss_pred hHH---HHHHHHHHHHHHhccchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHH-HHHHH-------------HHHhh
Confidence 441 011111111111111111111111 122222233444333222 12222 23333
Q ss_pred HhHH--HHHHHHHH----hcCHHHHHHHHHHHHHhCCCchhHHH-HHHHHhhcc-cCCccHHHHHHHHHhCCCCCchHHH
Q 000323 1261 CFAV--NHIWCMAV----LNGLECSMNLLEKYIKLYPSCLELVL-MKARLQKHD-FGDLSSVGFEEALIKWPKGVPGIQC 1332 (1669)
Q Consensus 1261 ~fKL--N~IR~lI~----LEDse~A~~LfdklLk~~P~d~eL~L-~AAyL~~K~-m~~~A~svle~AL~~~PkNa~g~~c 1332 (1669)
.++. .-+..||. .++.....-.+.+++...+.+.++|+ +++|+.+.- .+..+..++-.++..+|--.-
T Consensus 307 ~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgd---- 382 (881)
T KOG0128|consen 307 KEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGD---- 382 (881)
T ss_pred hhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHH----
Confidence 3333 33566665 45888999999999999999999966 556653332 366777899999999988888
Q ss_pred HHHHHHHHHHH
Q 000323 1333 IWNQYVEYALQ 1343 (1669)
Q Consensus 1333 aW~QLIq~al~ 1343 (1669)
.|.+++ .|+.
T Consensus 383 L~~ral-lAle 392 (881)
T KOG0128|consen 383 LWKRAL-LALE 392 (881)
T ss_pred HHHHHH-HHHH
Confidence 666666 4443
No 188
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=91.87 E-value=0.16 Score=38.72 Aligned_cols=27 Identities=30% Similarity=0.765 Sum_probs=25.1
Q ss_pred HHHHHHhhhccccchHHHHHHHHhhhc
Q 000323 1623 SERFFKRALSVYPFSIKLWKCYYDLSK 1649 (1669)
Q Consensus 1623 ~~rfy~~AlsvyPfS~~LW~~y~~~~~ 1649 (1669)
++..|++|+...|.+..+|.+|+.|+.
T Consensus 6 ~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 6 ARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 488999999999999999999999975
No 189
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.44 E-value=0.2 Score=39.37 Aligned_cols=34 Identities=9% Similarity=0.035 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCC
Q 000323 1049 EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1082 (1669)
Q Consensus 1049 aeaWy~yl~lY~~~~~~eea~emlekAVelnP~N 1082 (1669)
+++|+.++.+|...+..+++.++|++|++++|+|
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 4689999999999999999999999999999854
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=91.23 E-value=1.6 Score=45.41 Aligned_cols=80 Identities=19% Similarity=0.096 Sum_probs=62.0
Q ss_pred hhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCC---CHHHH----HHHHhcCCCcc
Q 000323 1028 LEGMKKALSLLSRALEADPTS---EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG---SYALW----LMYINSRTPLN 1097 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtS---aeaWy~yl~lY~~~~~~eea~emlekAVelnP~---NY~Lw----lmYInsr~sld 1097 (1669)
.|+.+.|..+|.++|+..+.. ..+++.++..|...|..+++..+|+++++-.|+ +-.++ +...+.+
T Consensus 14 ~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g---- 89 (120)
T PF12688_consen 14 LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG---- 89 (120)
T ss_pred cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC----
Confidence 366699999999999986665 679999999999999999999999999998888 44443 4444445
Q ss_pred cchhhHHHHHHHHHHhhh
Q 000323 1098 HRLDAYDAALSVLCRCAS 1115 (1669)
Q Consensus 1098 drl~~YdkAI~aLe~las 1115 (1669)
.+++|++.+.....
T Consensus 90 ----r~~eAl~~~l~~la 103 (120)
T PF12688_consen 90 ----RPKEALEWLLEALA 103 (120)
T ss_pred ----CHHHHHHHHHHHHH
Confidence 56777777755443
No 191
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.10 E-value=0.3 Score=38.59 Aligned_cols=30 Identities=20% Similarity=0.149 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHhhccCC
Q 000323 1407 GYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1438 (1669)
Q Consensus 1407 a~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N 1438 (1669)
-.+|.+++. .|++++|...|++||+.+|++
T Consensus 5 ~~~g~~~~~--~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 5 YNLGNAYFQ--LGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHH--TT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHH--hCCchHHHHHHHHHHHHCcCC
Confidence 567888888 999999999999999999974
No 192
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.01 E-value=0.21 Score=40.93 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=30.9
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHH
Q 000323 1316 FEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAE 1352 (1669)
Q Consensus 1316 le~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~ 1352 (1669)
|++||+++|+|+. +|+.|.......|++++|++
T Consensus 2 y~kAie~~P~n~~----a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAE----AYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHH----HHHHHHHHHHHCcCHHhhcC
Confidence 7899999999999 99999999999999999863
No 193
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=90.93 E-value=0.45 Score=52.92 Aligned_cols=84 Identities=12% Similarity=0.082 Sum_probs=59.2
Q ss_pred hhhhhccchHHHHHHHHHHHhcccc-----cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC-----------
Q 000323 1001 NKLKQVELSNEQCVEMALLILNQDA-----NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN----------- 1064 (1669)
Q Consensus 1001 ~~le~~~~d~qlWLelAl~~Lnq~~-----n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~----------- 1064 (1669)
......|+|.+.+...+.-++.... .+..-+..|..-|+.||.|||+...+++-++..|+.++.
T Consensus 16 a~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~ 95 (186)
T PF06552_consen 16 AAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEY 95 (186)
T ss_dssp HHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHH
Confidence 3567788999888887655544432 244679999999999999999999999999888885542
Q ss_pred CchHHHHHHHHHhhCCCCHH
Q 000323 1065 SVGKDDMFSYSVKHNEGSYA 1084 (1669)
Q Consensus 1065 ~eea~emlekAVelnP~NY~ 1084 (1669)
-+.+.++|++||..+|.|..
T Consensus 96 F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HH
T ss_pred HHHHHHHHHHHHhcCCCcHH
Confidence 12367889999999998753
No 194
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.89 E-value=0.38 Score=37.84 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCC
Q 000323 1406 FGYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1438 (1669)
Q Consensus 1406 fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N 1438 (1669)
+-.+|.++.+ .|++++|...|++|++++|+|
T Consensus 4 ~~~lg~~y~~--~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 4 YYNLGKIYEQ--LGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHH--TTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHH--cCCHHHHHHHHHHHHhhCCCC
Confidence 3678999999 999999999999999999954
No 195
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=90.87 E-value=0.58 Score=58.30 Aligned_cols=82 Identities=15% Similarity=0.203 Sum_probs=65.3
Q ss_pred chHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHhhCCCCHHHH
Q 000323 1008 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNT-NSVGKDDMFSYSVKHNEGSYALW 1086 (1669)
Q Consensus 1008 ~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~-~~eea~emlekAVelnP~NY~Lw 1086 (1669)
.|..+|+.++--.-..+ .+..--.+|..||..+|+++.+|..-+...+... +-+.+.++|.++++.+|++..||
T Consensus 103 ~D~~lW~~yi~f~kk~~-----~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw 177 (568)
T KOG2396|consen 103 GDVKLWLSYIAFCKKKK-----TYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLW 177 (568)
T ss_pred CCHHHHHHHHHHHHHhc-----chhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHH
Confidence 48899988765443332 1455557899999999999999999877666444 46679999999999999999999
Q ss_pred HHHHhcCC
Q 000323 1087 LMYINSRT 1094 (1669)
Q Consensus 1087 lmYInsr~ 1094 (1669)
--|.+.+-
T Consensus 178 ~eyfrmEL 185 (568)
T KOG2396|consen 178 KEYFRMEL 185 (568)
T ss_pred HHHHHHHH
Confidence 99999883
No 196
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.46 E-value=11 Score=44.64 Aligned_cols=112 Identities=13% Similarity=0.113 Sum_probs=85.1
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-----HHHHHHhcCCCcccchhhH
Q 000323 1029 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-----LWLMYINSRTPLNHRLDAY 1103 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-----LwlmYInsr~slddrl~~Y 1103 (1669)
++.+-|-..+.+...-.|+|.-+--..+.++-..+...++.++|+.-++=+|-|.. |+..-...+ +
T Consensus 66 ~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK-----~---- 136 (289)
T KOG3060|consen 66 GRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGK-----N---- 136 (289)
T ss_pred cchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCC-----c----
Confidence 44566777777777777888888888888888888888888888888888888877 443333333 1
Q ss_pred HHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1104 DAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1104 dkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
-.||+.+-+....|..| .|.|..+.++|..-|.|+||+--+..+.-
T Consensus 137 l~aIk~ln~YL~~F~~D--------~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 137 LEAIKELNEYLDKFMND--------QEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 26777777777888667 78999999999999999999887766663
No 197
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=90.44 E-value=35 Score=45.89 Aligned_cols=106 Identities=15% Similarity=0.183 Sum_probs=84.5
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-----HHHHHHhcCCCcccchh
Q 000323 1027 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-----LWLMYINSRTPLNHRLD 1101 (1669)
Q Consensus 1027 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-----LwlmYInsr~slddrl~ 1101 (1669)
+++++.+|+..+...|.-.|++.-+-..=+....+.+...++...++ |++.-+.+.. |=..|-.++
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le-~~~~~~~~D~~tLq~l~~~y~d~~-------- 91 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLE-ALYGLKGTDDLTLQFLQNVYRDLG-------- 91 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHh-hhccCCCCchHHHHHHHHHHHHHh--------
Confidence 56788999999999999999988776655555567787777875554 5555555544 566788888
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHH
Q 000323 1102 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQ 1150 (1669)
Q Consensus 1102 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ 1150 (1669)
.+++|..+|++....+ |. ++.++.++-.|.+-++|.++-+
T Consensus 92 ~~d~~~~~Ye~~~~~~-P~--------eell~~lFmayvR~~~yk~qQk 131 (932)
T KOG2053|consen 92 KLDEAVHLYERANQKY-PS--------EELLYHLFMAYVREKSYKKQQK 131 (932)
T ss_pred hhhHHHHHHHHHHhhC-Cc--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999998 56 7899999999999999987644
No 198
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=90.36 E-value=0.23 Score=58.88 Aligned_cols=65 Identities=18% Similarity=0.154 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHHhCCCchhHHHH-HHH-HhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHH
Q 000323 1275 GLECSMNLLEKYIKLYPSCLELVLM-KAR-LQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQ 1343 (1669)
Q Consensus 1275 Dse~A~~LfdklLk~~P~d~eL~L~-AAy-L~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~ 1343 (1669)
-....-+.|..+++.||.+++||++ +++ +......+.+++.|..+|..+|+++. +|..|.++++.
T Consensus 122 ~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~----iw~eyfr~El~ 188 (435)
T COG5191 122 MYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPR----IWIEYFRMELM 188 (435)
T ss_pred HHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCch----HHHHHHHHHHH
Confidence 4456677999999999999999877 555 45555577888999999999999999 99999888773
No 199
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.02 E-value=2 Score=50.31 Aligned_cols=93 Identities=18% Similarity=0.208 Sum_probs=75.7
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHhhCCCC-------HHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchh
Q 000323 1052 WITYLLIFYSNTNSVGKDDMFSYSVKHNEGS-------YALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHA 1124 (1669)
Q Consensus 1052 Wy~yl~lY~~~~~~eea~emlekAVelnP~N-------Y~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~ 1124 (1669)
.|..+.=++..+.-.++.+-|..=|+.-|++ |||+..|..++ .|++|..+|..+++.+ |+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg--------~y~~Aa~~f~~~~k~~-P~---- 210 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQG--------DYEDAAYIFARVVKDY-PK---- 210 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcc--------cchHHHHHHHHHHHhC-CC----
Confidence 4555444455555566777888888777764 78999999999 9999999999999998 44
Q ss_pred hhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1125 SACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1125 Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
|.+.-|.+|.+..+....|+.++|..||..+..
T Consensus 211 s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 211 SPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 456789999999999999999999999988775
No 200
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=89.93 E-value=19 Score=47.87 Aligned_cols=213 Identities=14% Similarity=0.130 Sum_probs=111.7
Q ss_pred chHHH-HHHHHHHHhcccc-cc-hhhHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHhCCCCchHHHHHHHHHhh-
Q 000323 1008 LSNEQ-CVEMALLILNQDA-NK-LEGMKKALSLLSRALEADPTS-----EILWITYLLIFYSNTNSVGKDDMFSYSVKH- 1078 (1669)
Q Consensus 1008 ~d~ql-WLelAl~~Lnq~~-n~-~g~ydAALdLLsrALEINPtS-----aeaWy~yl~lY~~~~~~eea~emlekAVel- 1078 (1669)
+-.|+ .|+.|+.++.+.. .+ ..++-++...++-|+|+--+- -..||.|+.+.-.++.-+.++++||||=-+
T Consensus 809 LAieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~ha 888 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHA 888 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChH
Confidence 44443 5778877776653 11 334445555556666654332 346888888888888888889999887322
Q ss_pred ---------CCCCH-------------HHHHHHHhcCCCcccchhhHHHHHHHHHHh-hhcCCCCcchhhhhh------H
Q 000323 1079 ---------NEGSY-------------ALWLMYINSRTPLNHRLDAYDAALSVLCRC-ASASDGDEMHASACI------L 1129 (1669)
Q Consensus 1079 ---------nP~NY-------------~LwlmYInsr~slddrl~~YdkAI~aLe~l-as~~~~Dr~~~Sa~i------L 1129 (1669)
+|... .-|--||.+..-.+..+..|..|...|+.. ...+ ..+.+-.|+| .
T Consensus 889 fev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~-qGk~~kAa~iA~esgd~ 967 (1416)
T KOG3617|consen 889 FEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCI-QGKTDKAARIAEESGDK 967 (1416)
T ss_pred HHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEee-ccCchHHHHHHHhcccH
Confidence 23222 267789999877777777777777766431 0011 0011111111 1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhhc--ccccCCCCcccchHHHHHHhhccCCcchhhHHHHH-HHH-hhccchHHHhh
Q 000323 1130 DLFLQMLQCFCMSGNTEKAIQRISRLL--IPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY-LVI-YRKLPDAVLQL 1205 (1669)
Q Consensus 1130 DILL~LvqLY~qSGnydKAI~tl~rLE--q~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iY-llr-YrvLPGd~y~q 1205 (1669)
-.-+.+...|--.|++.+|+.-+-|-. .+|+-=+.|+++-=.-+-++|+.+.+.++-.+.-| +.- |-.--.-+|..
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHk 1047 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHK 1047 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHh
Confidence 233566777777888888877322211 11111111111111122344555555444433333 111 21112345777
Q ss_pred hhhhhhhhccCCCCcc
Q 000323 1206 LECEKELFAIDWPPVQ 1221 (1669)
Q Consensus 1206 ~e~~KEAf~I~W~y~~ 1221 (1669)
.|.--+|+.+...+++
T Consensus 1048 AGm~~kALelAF~tqQ 1063 (1416)
T KOG3617|consen 1048 AGMIGKALELAFRTQQ 1063 (1416)
T ss_pred hcchHHHHHHHHhhcc
Confidence 7877777777444443
No 201
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.88 E-value=69 Score=41.00 Aligned_cols=131 Identities=19% Similarity=0.205 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHhCC-CCchHHHHHHHHHhhCCCC
Q 000323 1011 EQCVEMALLILNQDANKLEGMKKALSLLSRALEAD---PTS----EILWITYLLIFYSNT-NSVGKDDMFSYSVKHNEGS 1082 (1669)
Q Consensus 1011 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEIN---PtS----aeaWy~yl~lY~~~~-~~eea~emlekAVelnP~N 1082 (1669)
..=|.++..++.... +.+-|.+-|.+|+-+- |+. -.++..++++|.+.. .-..+..+++|||++.-.+
T Consensus 47 rt~LqLg~lL~~yT~----N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~ 122 (629)
T KOG2300|consen 47 RTHLQLGALLLRYTK----NVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSV 122 (629)
T ss_pred HHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC
Confidence 344555544444433 2466666666665543 332 345667778887776 4555889999999998433
Q ss_pred -HH-------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHH--HHHHHHHHHHhc---CHHHHH
Q 000323 1083 -YA-------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDL--FLQMLQCFCMSG---NTEKAI 1149 (1669)
Q Consensus 1083 -Y~-------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDI--LL~LvqLY~qSG---nydKAI 1149 (1669)
|| |+.+.+-++ +|+.|+++|+--++.. | +.++--+-+ ++.+.++..+.. ++.+++
T Consensus 123 p~wsckllfQLaql~~idk--------D~~sA~elLavga~sA--d--~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll 190 (629)
T KOG2300|consen 123 PYWSCKLLFQLAQLHIIDK--------DFPSALELLAVGAESA--D--HICFPYLRMLFTLSMLMLLIMERDDYDVEKLL 190 (629)
T ss_pred chhhHHHHHHHHHHHhhhc--------cchhHHHHHhcccccc--c--hhhhHHHHHHHHHHHHHHHHhCccHHHHHHHH
Confidence 33 666666677 8999999984444332 1 223322222 234455555554 467777
Q ss_pred HHHHhhcc
Q 000323 1150 QRISRLLI 1157 (1669)
Q Consensus 1150 ~tl~rLEq 1157 (1669)
+++..|++
T Consensus 191 ~~~~qi~~ 198 (629)
T KOG2300|consen 191 QRCGQIWQ 198 (629)
T ss_pred HHHHHHHh
Confidence 77777776
No 202
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.78 E-value=6.9 Score=46.34 Aligned_cols=218 Identities=16% Similarity=0.092 Sum_probs=124.9
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHH---hhc
Q 000323 1102 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILT---CLT 1178 (1669)
Q Consensus 1102 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~---YLt 1178 (1669)
+|-.+|..-+.-.... .+ .+...+|..-|...|.|.-.|+.| ..|..+ -+..|+. |+.
T Consensus 23 nyq~~ine~~~~~~~~-~~--------~e~d~y~~raylAlg~~~~~~~eI-------~~~~~~---~lqAvr~~a~~~~ 83 (299)
T KOG3081|consen 23 NYQQCINEAEKFSSSK-TD--------VELDVYMYRAYLALGQYQIVISEI-------KEGKAT---PLQAVRLLAEYLE 83 (299)
T ss_pred HHHHHHHHHHhhcccc-ch--------hHHHHHHHHHHHHccccccccccc-------ccccCC---hHHHHHHHHHHhh
Confidence 6677777665443332 22 566677777888999999887744 222332 2344443 333
Q ss_pred cCCc---chh----hHHHHH---HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCc
Q 000323 1179 ISDK---LIF----WVCCVY---LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGE 1248 (1669)
Q Consensus 1179 ~sDR---~~A----WL~~iY---llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~nde 1248 (1669)
...+ .++ |++..+ ....+.+-+-+|+..+-..+|+.. .-.....|---.-+.+...+.-...+.+
T Consensus 84 ~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~---~~~~~~lE~~Al~VqI~lk~~r~d~A~~-- 158 (299)
T KOG3081|consen 84 LESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKA---LHLGENLEAAALNVQILLKMHRFDLAEK-- 158 (299)
T ss_pred CcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHH---HhccchHHHHHHHHHHHHHHHHHHHHHH--
Confidence 2222 222 777777 667888889999999999999887 4444333322211111111111111011
Q ss_pred chhhhh---hhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHHHhhcccCCccHHHHHHHHHhC
Q 000323 1249 SLEKET---NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKW 1323 (1669)
Q Consensus 1249 sla~~~---~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAyL~~K~m~~~A~svle~AL~~~ 1323 (1669)
.+..-+ ..-+...++-.++...-.-+..+.|-=.|..+=+.+|..+.+ -++...|.+.+ .++|..+++.||...
T Consensus 159 ~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~-~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 159 ELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGR-YEEAESLLEEALDKD 237 (299)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcC-HHHHHHHHHHHHhcc
Confidence 111111 233333344444444333335666666777777766666666 66677777776 889999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHcCChH
Q 000323 1324 PKGVPGIQCIWNQYVEYALQNGRHD 1348 (1669)
Q Consensus 1324 PkNa~g~~caW~QLIq~al~~en~d 1348 (1669)
|+.+. .-.-+|-.+...|.-+
T Consensus 238 ~~dpe----tL~Nliv~a~~~Gkd~ 258 (299)
T KOG3081|consen 238 AKDPE----TLANLIVLALHLGKDA 258 (299)
T ss_pred CCCHH----HHHHHHHHHHHhCCCh
Confidence 99988 4444455555555443
No 203
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=89.62 E-value=6 Score=38.29 Aligned_cols=117 Identities=17% Similarity=0.189 Sum_probs=89.9
Q ss_pred hhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHH-HHHhcCCCcccch
Q 000323 1028 LEGMKKALSLLSRALE--ADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWL-MYINSRTPLNHRL 1100 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALE--INPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----Lwl-mYInsr~slddrl 1100 (1669)
.+.+..++..+..++. ..+....+|+.++.++...+.-..+.+.+..++...+.+.. ... .|...+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 144 (291)
T COG0457 72 LGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELG------- 144 (291)
T ss_pred cccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcC-------
Confidence 3556889999999998 89999999999999999998888899999999998877633 222 566666
Q ss_pred hhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1101 DAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1101 ~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
.++.|+..|.+..... +. .......++.+...+...++++.|+..+.+...
T Consensus 145 -~~~~a~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 145 -DYEEALELYEKALELD-PE----LNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred -CHHHHHHHHHHHHhcC-CC----ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 8899999998886633 31 001255666666668889999999997777764
No 204
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.40 E-value=1.8 Score=53.06 Aligned_cols=88 Identities=16% Similarity=0.130 Sum_probs=71.6
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhH-H
Q 000323 1026 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAY-D 1104 (1669)
Q Consensus 1026 n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~Y-d 1104 (1669)
.+...|++|+..=.++|+++|+++-++|.-+..+...++-+.|...|++|+++.|.|-..-.-++... .++..| +
T Consensus 268 lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~----~k~~~~~~ 343 (397)
T KOG0543|consen 268 LKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLK----QKIREYEE 343 (397)
T ss_pred HhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH----HHHHHHHH
Confidence 35567899999999999999999999999999999999999999999999999999988544444433 122233 5
Q ss_pred HHHHHHHHhhhcC
Q 000323 1105 AALSVLCRCASAS 1117 (1669)
Q Consensus 1105 kAI~aLe~las~~ 1117 (1669)
+...+|-+|.+..
T Consensus 344 kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 344 KEKKMYANMFAKL 356 (397)
T ss_pred HHHHHHHHHhhcc
Confidence 5588888887765
No 205
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=88.66 E-value=0.5 Score=56.01 Aligned_cols=58 Identities=21% Similarity=0.240 Sum_probs=51.3
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH
Q 000323 1027 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1084 (1669)
Q Consensus 1027 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~ 1084 (1669)
.-|+.++|--+|.|||...|+.+.++.++..+--...+-.+++.+|-+|+.++|.|..
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence 3467799999999999999999999999988865555566799999999999999987
No 206
>PRK15331 chaperone protein SicA; Provisional
Probab=88.40 E-value=1.4 Score=48.48 Aligned_cols=93 Identities=10% Similarity=-0.037 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HH
Q 000323 1011 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LW 1086 (1669)
Q Consensus 1011 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----Lw 1086 (1669)
+.--..|+...++ |+|+.|..+|....-.||.++.-|.-|+..+-.+++-+++.++|..|.-++++++. .+
T Consensus 38 e~iY~~Ay~~y~~-----Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 38 DGLYAHAYEFYNQ-----GRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred HHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 4445556666655 67899999999999999999999999999999999999999999999999988887 88
Q ss_pred HHHHhcCCCcccchhhHHHHHHHHHHhhhc
Q 000323 1087 LMYINSRTPLNHRLDAYDAALSVLCRCASA 1116 (1669)
Q Consensus 1087 lmYInsr~slddrl~~YdkAI~aLe~las~ 1116 (1669)
.-|+..+ .-+.|+..|+.....
T Consensus 113 qC~l~l~--------~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 113 QCQLLMR--------KAAKARQCFELVNER 134 (165)
T ss_pred HHHHHhC--------CHHHHHHHHHHHHhC
Confidence 9999999 779999999766653
No 207
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.09 E-value=2.4 Score=48.04 Aligned_cols=107 Identities=17% Similarity=0.054 Sum_probs=67.5
Q ss_pred ccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH--------HHHhh-----hhccc---ccccchhh
Q 000323 1311 LSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR--------WFHSV-----WKVQY---SQVEISDP 1374 (1669)
Q Consensus 1311 ~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~--------ff~gi-----a~~Q~---~~deALDa 1374 (1669)
+.....++....+|++.= .+-+=++++.-+++.+++++|+..++. -|..+ +.+|. ..++|+.+
T Consensus 70 ~~~~~~ekf~~~n~~t~Y-a~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~ 148 (207)
T COG2976 70 KSIAAAEKFVQANGKTIY-AVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKT 148 (207)
T ss_pred hhHHHHHHHHhhccccHH-HHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 444444555555544443 333336677777777777777777764 23332 33332 77788887
Q ss_pred hcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCC
Q 000323 1375 LVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASE 1438 (1669)
Q Consensus 1375 Lrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N 1438 (1669)
|.....+ .+++ .++-+-||+|-. +|+.+||+.+|++||...+++
T Consensus 149 L~t~~~~-------~w~~-----------~~~elrGDill~--kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 149 LDTIKEE-------SWAA-----------IVAELRGDILLA--KGDKQEARAAYEKALESDASP 192 (207)
T ss_pred Hhccccc-------cHHH-----------HHHHHhhhHHHH--cCchHHHHHHHHHHHHccCCh
Confidence 7732222 1111 234688999999 999999999999999986654
No 208
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=88.09 E-value=0.83 Score=34.78 Aligned_cols=30 Identities=33% Similarity=0.522 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000323 1030 GMKKALSLLSRALEADPTSEILWITYLLIF 1059 (1669)
Q Consensus 1030 ~ydAALdLLsrALEINPtSaeaWy~yl~lY 1059 (1669)
..+.|..+|.++++..|.++.+|..|+.+.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 467888899999999999999999988773
No 209
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.08 E-value=24 Score=41.56 Aligned_cols=119 Identities=14% Similarity=0.071 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhh
Q 000323 1228 QRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAV-LNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQK 1305 (1669)
Q Consensus 1228 dnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~-LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~ 1305 (1669)
..+.+.++.|.+||.. +++.+.. .++ .+| ..+|.+ +|.-.+|+..|.++-..--.+--| |=+-.|+.+
T Consensus 131 ekaI~~YE~Aae~yk~---ees~ssA--NKC--~lK---vA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyflk 200 (288)
T KOG1586|consen 131 EKAIAHYEQAAEYYKG---EESVSSA--NKC--LLK---VAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLK 200 (288)
T ss_pred HHHHHHHHHHHHHHcc---hhhhhhH--HHH--HHH---HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHH
Confidence 6788999999999974 4443332 111 122 334544 888899999999999988888777 555555544
Q ss_pred ccc-------CCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000323 1306 HDF-------GDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1356 (1669)
Q Consensus 1306 K~m-------~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ 1356 (1669)
.+| +..+...+++-.+++|.=...-.|.+.-=+..++..+|.+.--+.+..
T Consensus 201 AgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d~e~fte~vke 258 (288)
T KOG1586|consen 201 AGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQDIEKFTEVVKE 258 (288)
T ss_pred HHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 442 234457889999999999888999998888899999998887777766
No 210
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=87.86 E-value=2.2 Score=45.96 Aligned_cols=81 Identities=16% Similarity=0.063 Sum_probs=66.8
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH--------HHHHHHhcCCCcccc
Q 000323 1028 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--------LWLMYINSRTPLNHR 1099 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~--------LwlmYInsr~slddr 1099 (1669)
.|.++.|+..|.++|.+-|..+.+|-.-++.|.-.+.++++++-+.+|++++-+--. -+++|--.+
T Consensus 56 ~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g------ 129 (175)
T KOG4555|consen 56 AGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG------ 129 (175)
T ss_pred ccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC------
Confidence 478999999999999999999999999999999999999999999999999854422 455665555
Q ss_pred hhhHHHHHHHHHHhhhc
Q 000323 1100 LDAYDAALSVLCRCASA 1116 (1669)
Q Consensus 1100 l~~YdkAI~aLe~las~ 1116 (1669)
.-++|+.=|+.++.-
T Consensus 130 --~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 130 --NDDAARADFEAAAQL 144 (175)
T ss_pred --chHHHHHhHHHHHHh
Confidence 337788877766553
No 211
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.87 E-value=4.1 Score=46.61 Aligned_cols=113 Identities=14% Similarity=0.101 Sum_probs=79.4
Q ss_pred hhhhhhccchH--HHHHHHHHHHhcccc--cchhhHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHhCCCCchHHH
Q 000323 1000 LNKLKQVELSN--EQCVEMALLILNQDA--NKLEGMKKALSLLSRALEADPTSEI-----LWITYLLIFYSNTNSVGKDD 1070 (1669)
Q Consensus 1000 i~~le~~~~d~--qlWLelAl~~Lnq~~--n~~g~ydAALdLLsrALEINPtSae-----aWy~yl~lY~~~~~~eea~e 1070 (1669)
+.-+|.-+.|. +.-++.|-.+=..+. ++-|.|..|..-|+.||++=|..+. +|..-+..+.+++..+.+.+
T Consensus 76 mae~E~i~~deek~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~ 155 (271)
T KOG4234|consen 76 MAEIEKIFSDEEKDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIE 155 (271)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHH
Confidence 44555555553 445666655444332 5669999999999999999998654 44444556667777888999
Q ss_pred HHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCc
Q 000323 1071 MFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDE 1121 (1669)
Q Consensus 1071 mlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr 1121 (1669)
-|.+|++++|.+.. -+-.|-+.. .|+.|++=|-...... |.+
T Consensus 156 dcsKaiel~pty~kAl~RRAeayek~e--------k~eealeDyKki~E~d-Ps~ 201 (271)
T KOG4234|consen 156 DCSKAIELNPTYEKALERRAEAYEKME--------KYEEALEDYKKILESD-PSR 201 (271)
T ss_pred HHHhhHhcCchhHHHHHHHHHHHHhhh--------hHHHHHHHHHHHHHhC-cch
Confidence 99999999984443 355666655 7888888887777766 443
No 212
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=86.87 E-value=72 Score=37.79 Aligned_cols=186 Identities=12% Similarity=0.068 Sum_probs=107.8
Q ss_pred HHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcc
Q 000323 1087 LMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRH 1166 (1669)
Q Consensus 1087 lmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~ 1166 (1669)
+-=++.+ .|++|+..|+.+-+++|-+ .+...+.+.+++-+-..|+|+.|+..++|... +-+.++
T Consensus 42 ~~~L~~g--------n~~~A~~~fe~l~~~~p~s-----~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~--lyP~~~- 105 (254)
T COG4105 42 LTELQKG--------NYEEAIKYFEALDSRHPFS-----PYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR--LYPTHP- 105 (254)
T ss_pred HHHHhcC--------CHHHHHHHHHHHHHcCCCC-----cccHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCCCC-
Confidence 4456677 8999999999999998433 46689999999999999999999999999886 443333
Q ss_pred cchHHHHHHhhccCCcchhhHHHHH-HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhc
Q 000323 1167 SLFLSDILTCLTISDKLIFWVCCVY-LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYS 1245 (1669)
Q Consensus 1167 ~lSLsKi~~YLt~sDR~~AWL~~iY-llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ 1245 (1669)
.+.++-++= +..|..+ +|+ .-||.-+..=+...-+....|-
T Consensus 106 ----------------n~dY~~YlkgLs~~~~i-----------------~~~-----~rDq~~~~~A~~~f~~~i~ryP 147 (254)
T COG4105 106 ----------------NADYAYYLKGLSYFFQI-----------------DDV-----TRDQSAARAAFAAFKELVQRYP 147 (254)
T ss_pred ----------------ChhHHHHHHHHHHhccC-----------------Ccc-----ccCHHHHHHHHHHHHHHHHHCC
Confidence 223333332 2222221 111 1122222111111112222222
Q ss_pred CCcchhhhh-----hhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH-----HHHHHHHhhcccCCccHHH
Q 000323 1246 NGESLEKET-----NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-----VLMKARLQKHDFGDLSSVG 1315 (1669)
Q Consensus 1246 ndesla~~~-----~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL-----~L~AAyL~~K~m~~~A~sv 1315 (1669)
|.+=..... =......-=+...+.|..-+-...|++=|+.+++.+|+-... +|.-+|+.++ +.+.|-.
T Consensus 148 nS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lg-l~~~a~~- 225 (254)
T COG4105 148 NSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALG-LTDEAKK- 225 (254)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhC-ChHHHHH-
Confidence 211110000 000011111222334344668999999999999999998776 6666675543 3555544
Q ss_pred HHHHHHhCCCCCc
Q 000323 1316 FEEALIKWPKGVP 1328 (1669)
Q Consensus 1316 le~AL~~~PkNa~ 1328 (1669)
...+|..++-+.+
T Consensus 226 ~~~vl~~N~p~s~ 238 (254)
T COG4105 226 TAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHhcCCCCc
Confidence 4778888877776
No 213
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=86.74 E-value=0.56 Score=43.10 Aligned_cols=63 Identities=11% Similarity=0.103 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcccccchhhHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhC
Q 000323 1012 QCVEMALLILNQDANKLEGMKKALSLLSRALEAD-------PTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHN 1079 (1669)
Q Consensus 1012 lWLelAl~~Lnq~~n~~g~ydAALdLLsrALEIN-------PtSaeaWy~yl~lY~~~~~~eea~emlekAVeln 1079 (1669)
.+..+|.-+... |+|+.|+..|.+||++- |.-+.+|+.++.+|..+++..++.++|++|++..
T Consensus 7 ~~~~la~~~~~~-----~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 7 AYNNLARVYREL-----GRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHT-----T-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 344445444433 66799999999999762 2346788889999999999999999999998753
No 214
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=86.69 E-value=0.69 Score=55.02 Aligned_cols=82 Identities=16% Similarity=0.286 Sum_probs=65.6
Q ss_pred cchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHhCCCCchHHHHHHHHHhhCCCCHHH
Q 000323 1007 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITY-LLIFYSNTNSVGKDDMFSYSVKHNEGSYAL 1085 (1669)
Q Consensus 1007 ~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~y-l~lY~~~~~~eea~emlekAVelnP~NY~L 1085 (1669)
+.|.-.|..+|-=...- +-|...-+++..||..+|+++++|... ..-|.-.++-+....||.+++.+||++-.+
T Consensus 104 f~D~k~w~~y~~Y~~k~-----k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~i 178 (435)
T COG5191 104 FNDPKIWSQYAAYVIKK-----KMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRI 178 (435)
T ss_pred CCCcHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchH
Confidence 35777888876433333 346777889999999999999999884 444556677777999999999999999999
Q ss_pred HHHHHhcC
Q 000323 1086 WLMYINSR 1093 (1669)
Q Consensus 1086 wlmYInsr 1093 (1669)
|.-|.+.+
T Consensus 179 w~eyfr~E 186 (435)
T COG5191 179 WIEYFRME 186 (435)
T ss_pred HHHHHHHH
Confidence 98888877
No 215
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.69 E-value=37 Score=40.61 Aligned_cols=57 Identities=16% Similarity=0.131 Sum_probs=43.7
Q ss_pred HHhcCHHHHHHHHHHHHHhCCCchhH---HHHHHHHhhcccCCccHHHHHHHHHhCCCCCc
Q 000323 1271 AVLNGLECSMNLLEKYIKLYPSCLEL---VLMKARLQKHDFGDLSSVGFEEALIKWPKGVP 1328 (1669)
Q Consensus 1271 I~LEDse~A~~LfdklLk~~P~d~eL---~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~ 1328 (1669)
+.+++.++|..++..+|..++.+.+. .+.++.+.-|. ++..-.-+.+.....|+.+-
T Consensus 218 l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd-~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 218 LQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD-AEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHhcCCcchH
Confidence 44789999999999999999999998 66677665554 33233666778888887765
No 216
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=86.03 E-value=6.4 Score=42.55 Aligned_cols=51 Identities=18% Similarity=0.209 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1102 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1102 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
.|++|++.|+.+-.++|-. ......-|.++..|-.+|+|+.|+.+++|+..
T Consensus 25 ~Y~~A~~~le~L~~ryP~g-----~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 25 NYEEAIKQLEALDTRYPFG-----EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred CHHHHHHHHHHHHhcCCCC-----cccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8999999999999998543 35578889999999999999999999999886
No 217
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=85.76 E-value=2.7 Score=43.21 Aligned_cols=49 Identities=20% Similarity=0.218 Sum_probs=41.0
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 000323 1028 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSV 1076 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAV 1076 (1669)
.|+++.|..++.+++++||.+..+|..++..|...|...++.+.|++..
T Consensus 75 ~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 75 AGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3668999999999999999999999999999999999888888887764
No 218
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.37 E-value=55 Score=37.89 Aligned_cols=156 Identities=14% Similarity=0.035 Sum_probs=95.0
Q ss_pred hCCCchhHHHHHHHHhhccc-CCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-hhhhccc
Q 000323 1289 LYPSCLELVLMKARLQKHDF-GDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFH-SVWKVQY 1366 (1669)
Q Consensus 1289 ~~P~d~eL~L~AAyL~~K~m-~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~-gia~~Q~ 1366 (1669)
.....++.||..+.+..+.+ ..-|...+.++....+........+...++++.|..|+...|+.+++.... .+.....
T Consensus 141 ~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~ 220 (352)
T PF02259_consen 141 LPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNID 220 (352)
T ss_pred chhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccc
Confidence 35555566888888766654 667888888888877544332233677889999999999999999988766 3333221
Q ss_pred -ccccchh-hhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHh----hhcCHHHHHHHHHHHHhhccCCcH
Q 000323 1367 -SQVEISD-PLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRL----LQNDWNEARLAIDAALKAAASEHF 1440 (1669)
Q Consensus 1367 -~~deALD-aLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~----Lqg~~~EAfaAYDKALkanp~N~~ 1440 (1669)
.....+. .+-.....+.... ...+ ...+.--+|-.+|.-.... -.+..+++...|.+|++..|..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-- 291 (352)
T PF02259_consen 221 SISNAELKSGLLESLEVISSTN----LDKE---SKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW-- 291 (352)
T ss_pred cccHHHHhhccccccccccccc----hhhh---hHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH--
Confidence 1110000 0000000000000 0000 0112223346666655553 4589999999999999999988
Q ss_pred HHHHHHHHHHHhc
Q 000323 1441 KHCVREHAMLLLI 1453 (1669)
Q Consensus 1441 i~cLNNYAYFLS~ 1453 (1669)
..+|..+|.|...
T Consensus 292 ~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 292 EKAWHSWALFNDK 304 (352)
T ss_pred HHHHHHHHHHHHH
Confidence 7799998888663
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=85.06 E-value=1.8 Score=39.80 Aligned_cols=62 Identities=11% Similarity=0.088 Sum_probs=47.3
Q ss_pred CCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhh---CCCCH-H-------HHHHHHhcCCCcccchhhHHHHHHHHHHhh
Q 000323 1046 PTSEILWITYLLIFYSNTNSVGKDDMFSYSVKH---NEGSY-A-------LWLMYINSRTPLNHRLDAYDAALSVLCRCA 1114 (1669)
Q Consensus 1046 PtSaeaWy~yl~lY~~~~~~eea~emlekAVel---nP~NY-~-------LwlmYInsr~slddrl~~YdkAI~aLe~la 1114 (1669)
|+-+.+|..++.+|...+.-.++.++|++|+++ -+++. . ++..|...+ .|++|++.|++..
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g--------~~~~A~~~~~~al 73 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLG--------DYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHH
Confidence 455788999999999999999999999999955 22222 2 666677777 8899999887764
Q ss_pred h
Q 000323 1115 S 1115 (1669)
Q Consensus 1115 s 1115 (1669)
+
T Consensus 74 ~ 74 (78)
T PF13424_consen 74 D 74 (78)
T ss_dssp H
T ss_pred h
Confidence 3
No 220
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=84.68 E-value=8.4 Score=48.20 Aligned_cols=113 Identities=15% Similarity=0.088 Sum_probs=86.4
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----------HHHHHHhcCCCcc
Q 000323 1028 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----------LWLMYINSRTPLN 1097 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----------LwlmYInsr~sld 1097 (1669)
....+.|-.+|...++..|+++-..++-++++...++.+++.+.|++|+... +.+ ++|.|+-..
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q--~~~~Ql~~l~~~El~w~~~~~~---- 319 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQ--SEWKQLHHLCYFELAWCHMFQH---- 319 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccch--hhHHhHHHHHHHHHHHHHHHHc----
Confidence 4567899999999999999999999999999999999999999999998433 222 778888888
Q ss_pred cchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCH-------HHHHHHHHhhcc
Q 000323 1098 HRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNT-------EKAIQRISRLLI 1157 (1669)
Q Consensus 1098 drl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGny-------dKAI~tl~rLEq 1157 (1669)
.|++|...+.++...+.-.+ + =.-++..=+|.+.|+. ++|..-+.++-.
T Consensus 320 ----~w~~A~~~f~~L~~~s~WSk-----a--~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 320 ----DWEEAAEYFLRLLKESKWSK-----A--FYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred ----hHHHHHHHHHHHHhccccHH-----H--HHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 89999999999877552222 1 1234445577778877 777775544443
No 221
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=84.59 E-value=7.9 Score=39.80 Aligned_cols=98 Identities=15% Similarity=0.215 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhH
Q 000323 1030 GMKKALSLLSRALEADPTSE------ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAY 1103 (1669)
Q Consensus 1030 ~ydAALdLLsrALEINPtSa------eaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~Y 1103 (1669)
.-..+...|.+++.+..... .-|..-..- ....++..|++ .+...|+..+ .|
T Consensus 21 ~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~--------~l~~~~~~~~~------~l~~~~~~~~--------~~ 78 (146)
T PF03704_consen 21 DPEEAIELLEEALALYRGDFLPDLDDEEWVEPERE--------RLRELYLDALE------RLAEALLEAG--------DY 78 (146)
T ss_dssp -HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHH--------HHHHHHHHHHH------HHHHHHHHTT---------H
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHH--------HHHHHHHHHHH------HHHHHHHhcc--------CH
Confidence 34788888888888875421 234442222 12233333322 2556777888 89
Q ss_pred HHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1104 DAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1104 dkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
++|+..+.++.... |-. ++++..++.+|...|++..|+..+.++..
T Consensus 79 ~~a~~~~~~~l~~d-P~~-------E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 79 EEALRLLQRALALD-PYD-------EEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHS-TT--------HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCC-------HHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999998 455 89999999999999999999998888764
No 222
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.09 E-value=1.6e+02 Score=38.29 Aligned_cols=99 Identities=14% Similarity=0.103 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHH-hCCCCchHHHHHHHHHhhCCCC-HH---------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhc
Q 000323 1048 SEILWITYLLIFY-SNTNSVGKDDMFSYSVKHNEGS-YA---------LWLMYINSRTPLNHRLDAYDAALSVLCRCASA 1116 (1669)
Q Consensus 1048 SaeaWy~yl~lY~-~~~~~eea~emlekAVelnP~N-Y~---------LwlmYInsr~slddrl~~YdkAI~aLe~las~ 1116 (1669)
.+.+.+.|+.++. ...+..+|..+++||+.++..+ +. |..+|-+.+-+. |+..+.++.+.
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~---------a~~~l~~~I~~ 128 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA---------ALKNLDKAIED 128 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH---------HHHHHHHHHHH
Confidence 4567888888887 5556777999999999888532 22 566666666222 44444444433
Q ss_pred CCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1117 SDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1117 ~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
..... .++|..=.-|..+.++...+++..|++.|..+..
T Consensus 129 ~~~~~--~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~ 167 (608)
T PF10345_consen 129 SETYG--HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQ 167 (608)
T ss_pred HhccC--chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 31111 2333333333346666666999999998888886
No 223
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=82.52 E-value=2.8 Score=52.33 Aligned_cols=91 Identities=18% Similarity=0.164 Sum_probs=71.5
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHH
Q 000323 1026 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDA 1105 (1669)
Q Consensus 1026 n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~Ydk 1105 (1669)
.+...|+.|.++|+.||+++|+.++.|-.-+..+.+.+.--+++.-+.+|++++|...- -|...+ +...++..|-+
T Consensus 15 l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K---~Y~rrg-~a~m~l~~~~~ 90 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIK---AYVRRG-TAVMALGEFKK 90 (476)
T ss_pred cccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhh---eeeecc-HHHHhHHHHHH
Confidence 45677999999999999999999999999988888888888899999999999974332 222221 22333448899
Q ss_pred HHHHHHHhhhcCCCCc
Q 000323 1106 ALSVLCRCASASDGDE 1121 (1669)
Q Consensus 1106 AI~aLe~las~~~~Dr 1121 (1669)
|+..|+..++.. |++
T Consensus 91 A~~~l~~~~~l~-Pnd 105 (476)
T KOG0376|consen 91 ALLDLEKVKKLA-PND 105 (476)
T ss_pred HHHHHHHhhhcC-cCc
Confidence 999999988887 554
No 224
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=81.73 E-value=1.3e+02 Score=40.83 Aligned_cols=289 Identities=18% Similarity=0.147 Sum_probs=163.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-------------CCCCchHHHHHHHHHhhC---CCCHHHHHHHHhc
Q 000323 1029 EGMKKALSLLSRALEADPTSEILWITYLLIFYS-------------NTNSVGKDDMFSYSVKHN---EGSYALWLMYINS 1092 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~-------------~~~~eea~emlekAVeln---P~NY~LwlmYIns 1092 (1669)
+++..-+.+..+.|+-++++ |..|...+.+ ..-.......-++|.+.- -.+-.|+++-+..
T Consensus 240 ~~w~~l~~l~~~Ll~k~~Dd---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~k 316 (932)
T KOG2053|consen 240 NRWQELFELSSRLLEKGNDD---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDK 316 (932)
T ss_pred cChHHHHHHHHHHHHhCCcc---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHH
Confidence 34556666777777777777 3333221111 111112334444444333 3344577777777
Q ss_pred CCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHH
Q 000323 1093 RTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSD 1172 (1669)
Q Consensus 1093 r~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsK 1172 (1669)
+-.+.++ .++++..| .+.+ +++ +-|..|+-.++..| +.++.+.-++++.. ..+ ..+
T Consensus 317 r~~~~gd---~ee~~~~y---~~kf-g~k---pcc~~Dl~~yl~~l-----~~~q~~~l~~~l~~-----~~~-~~s--- 372 (932)
T KOG2053|consen 317 RYKLIGD---SEEMLSYY---FKKF-GDK---PCCAIDLNHYLGHL-----NIDQLKSLMSKLVL-----ADD-DSS--- 372 (932)
T ss_pred HhcccCC---hHHHHHHH---HHHh-CCC---cHhHhhHHHhhccC-----CHHHHHHHHHHhhc-----cCC-cch---
Confidence 7644443 48888888 4445 343 44566766555444 34444555555553 221 111
Q ss_pred HHHhhccCCcchhhH------HHHHHHHhhccchHHHhhhh-hhhhhhccCCC-CcccchhhHHHHHHHHHHH----HHH
Q 000323 1173 ILTCLTISDKLIFWV------CCVYLVIYRKLPDAVLQLLE-CEKELFAIDWP-PVQLEDDEKQRAIKLIEMA----VNS 1240 (1669)
Q Consensus 1173 i~~YLt~sDR~~AWL------~~iYllrYrvLPGd~y~q~e-~~KEAf~I~W~-y~~vlk~EPdnalAL~smA----~dY 1240 (1669)
+|.++.|. +-.+.-.|-.||.+=....- +-+-.|.-+-. ...++.+|-.....+..+| +|.
T Consensus 373 -------~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~ 445 (932)
T KOG2053|consen 373 -------GDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDL 445 (932)
T ss_pred -------hhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHH
Confidence 55544432 22234456666665444433 22222322111 3445556655553333333 456
Q ss_pred HhhhcCCcchhhhh---------hhchhhHhHHHHHHHHHHhcCHHHHHHHHHHH-HHhCCCchhHHHHHHHHhhcccCC
Q 000323 1241 VELYSNGESLEKET---------NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKY-IKLYPSCLELVLMKARLQKHDFGD 1310 (1669)
Q Consensus 1241 Y~~~~ndesla~~~---------~~kt~~~fKLN~IR~lI~LEDse~A~~Lfdkl-Lk~~P~d~eL~L~AAyL~~K~m~~ 1310 (1669)
|+. +||+..--+. +....-.+|+-.||.|-.++-...|.++|+.+ +|.-+.|.-=-+...++..-++-.
T Consensus 446 ~rk-tnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~t~g~~~ 524 (932)
T KOG2053|consen 446 WRK-TNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAETSGRSS 524 (932)
T ss_pred HHh-cCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHHHhcccch
Confidence 665 6665522221 45556677888888887788888888888776 444444433366677777777777
Q ss_pred ccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000323 1311 LSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1356 (1669)
Q Consensus 1311 ~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ 1356 (1669)
.+...|...+.+--++.. =.--||..|.+.|.|+++++...-
T Consensus 525 ~~s~~~~~~lkfy~~~~k----E~~eyI~~AYr~g~ySkI~em~~f 566 (932)
T KOG2053|consen 525 FASNTFNEHLKFYDSSLK----ETPEYIALAYRRGAYSKIPEMLAF 566 (932)
T ss_pred hHHHHHHHHHHHHhhhhh----hhHHHHHHHHHcCchhhhHHHHHH
Confidence 777888888877666655 445678889999999999887643
No 225
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=81.63 E-value=4.2 Score=51.20 Aligned_cols=112 Identities=16% Similarity=0.249 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----------HH----------HHHHh
Q 000323 1032 KKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----------LW----------LMYIN 1091 (1669)
Q Consensus 1032 dAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----------Lw----------lmYIn 1091 (1669)
.+-..+=.+||+++|+-+.+|.-|+.-. -.+..++.++|++||+....++. .| .+|++
T Consensus 185 ~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~K 262 (539)
T PF04184_consen 185 QARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAK 262 (539)
T ss_pred HHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhH
Confidence 4444455789999999999999987752 22345788999999988776665 11 26666
Q ss_pred cC-----CCcccchhhHHHHHHHHHHhhhcCCC-CcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Q 000323 1092 SR-----TPLNHRLDAYDAALSVLCRCASASDG-DEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1156 (1669)
Q Consensus 1092 sr-----~slddrl~~YdkAI~aLe~las~~~~-Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLE 1156 (1669)
-+ |+++ ...+||..+-++.+-+|. |. +-|-..|+..+.-.+.|..+-..|.+..
T Consensus 263 rRLAmCarklG----r~~EAIk~~rdLlke~p~~~~-------l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLG----RLREAIKMFRDLLKEFPNLDN-------LNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhC----ChHHHHHHHHHHHhhCCccch-------hhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 55 1122 228899999999887744 34 5567788899999999999988666554
No 226
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=81.39 E-value=0.58 Score=52.83 Aligned_cols=33 Identities=39% Similarity=0.835 Sum_probs=28.7
Q ss_pred ccccCCCCCCC-cceeecccccccCCCCcchhhh
Q 000323 845 YTCNLAIDPLW-PLCMYELRGKCNNDECPWQHVK 877 (1669)
Q Consensus 845 ~t~s~~idp~~-~lC~fel~G~CNd~~C~wQH~~ 877 (1669)
-..|+.+||.. |-|||-|-|+||+..|++-|.-
T Consensus 250 cnlsheldprripacryfllgkcnnpncryvhih 283 (377)
T KOG1492|consen 250 CNLSHELDPRRIPACRYFLLGKCNNPNCRYVHIH 283 (377)
T ss_pred CCcccccCccccchhhhhhhccCCCCCceEEEEe
Confidence 34589999975 8999999999999999999864
No 227
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=81.36 E-value=1.6e+02 Score=37.05 Aligned_cols=83 Identities=17% Similarity=0.143 Sum_probs=67.3
Q ss_pred cchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccc
Q 000323 1026 NKLEGMKKALSLLSRALEA--DPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHR 1099 (1669)
Q Consensus 1026 n~~g~ydAALdLLsrALEI--NPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddr 1099 (1669)
+..|+++.|-.+|.++-|. |++=+ +....+.+-..++.-..+.+-...+.+..|.+-. .-..|+.++
T Consensus 129 ~qrgd~~~an~yL~eaae~~~~~~l~-v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g------ 201 (400)
T COG3071 129 QQRGDEDRANRYLAEAAELAGDDTLA-VELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLG------ 201 (400)
T ss_pred HhcccHHHHHHHHHHHhccCCCchHH-HHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhc------
Confidence 4568899999999999998 44433 3334466766788778899999999999999998 448899999
Q ss_pred hhhHHHHHHHHHHhhhcC
Q 000323 1100 LDAYDAALSVLCRCASAS 1117 (1669)
Q Consensus 1100 l~~YdkAI~aLe~las~~ 1117 (1669)
+|...+.++..+.+..
T Consensus 202 --~~~~ll~~l~~L~ka~ 217 (400)
T COG3071 202 --AWQALLAILPKLRKAG 217 (400)
T ss_pred --cHHHHHHHHHHHHHcc
Confidence 9999999999988864
No 228
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=80.41 E-value=70 Score=40.67 Aligned_cols=167 Identities=13% Similarity=0.202 Sum_probs=95.6
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH--HHHHHHhcCCCcccchhhHHHHHHHHHHhh
Q 000323 1037 LLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--LWLMYINSRTPLNHRLDAYDAALSVLCRCA 1114 (1669)
Q Consensus 1037 LLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~--LwlmYInsr~slddrl~~YdkAI~aLe~la 1114 (1669)
-|.--+.-||++.--||.|.++|-.+++-.+..+||+.-. +|-.|. .|-.|+..+.-++ .|..--.+|.+..
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~--~pfp~~~~aw~ly~s~ELA~~----df~svE~lf~rCL 103 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLS--SPFPIMEHAWRLYMSGELARK----DFRSVESLFGRCL 103 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhc--CCCccccHHHHHHhcchhhhh----hHHHHHHHHHHHH
Confidence 4666778899999999999999988888888899999874 444444 9999999884443 3443334443433
Q ss_pred hcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcch--------hh
Q 000323 1115 SASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLI--------FW 1186 (1669)
Q Consensus 1115 s~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~--------AW 1186 (1669)
+.. -. +|+|..-+.- |.+++-+-+ |-. + .-..+.|.-.-. |+ +|
T Consensus 104 ~k~--l~-------ldLW~lYl~Y----------IRr~n~~~t----Gq~-r---~~i~~ayefv~~-~~~~e~~s~~~W 155 (660)
T COG5107 104 KKS--LN-------LDLWMLYLEY----------IRRVNNLIT----GQK-R---FKIYEAYEFVLG-CAIFEPQSENYW 155 (660)
T ss_pred hhh--cc-------HhHHHHHHHH----------HHhhCcccc----cch-h---hhhHHHHHHHHh-cccccccccchH
Confidence 332 12 6666543332 232222221 110 0 111222222111 22 38
Q ss_pred HHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHh
Q 000323 1187 VCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVE 1242 (1669)
Q Consensus 1187 L~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~ 1242 (1669)
=-+.-.++|..-.+.|-.|..- ...=.+ |.+.+.+.=+|.-+|-.. ++..+
T Consensus 156 ~ey~~fle~~~~~~kwEeQqri-d~iR~~---Y~ral~tP~~nleklW~d-y~~fE 206 (660)
T COG5107 156 DEYGLFLEYIEELGKWEEQQRI-DKIRNG---YMRALQTPMGNLEKLWKD-YENFE 206 (660)
T ss_pred HHHHHHHHhccccccHHHHHHH-HHHHHH---HHHHHcCccccHHHHHHH-HHHHH
Confidence 7777789998888888755531 111123 334444444666666655 44444
No 229
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.40 E-value=6.3 Score=46.33 Aligned_cols=101 Identities=15% Similarity=0.070 Sum_probs=79.6
Q ss_pred HHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHH
Q 000323 1013 CVEMALLILNQDANKLEGMKKALSLLSRALEADPT---SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMY 1089 (1669)
Q Consensus 1013 WLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPt---SaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmY 1089 (1669)
--..|+.++.. |+|+.|-..|..-+.-.|+ .+.++|-|+..|+.+++.+++-..|..+++-.|++-+.--++
T Consensus 144 ~Y~~A~~~~ks-----gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal 218 (262)
T COG1729 144 LYNAALDLYKS-----GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL 218 (262)
T ss_pred HHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence 34455655544 5689999999999999999 578999999999999999999999999999999988844444
Q ss_pred HhcCCCcccchhhHHHHHHHHHHhhhcCCCC
Q 000323 1090 INSRTPLNHRLDAYDAALSVLCRCASASDGD 1120 (1669)
Q Consensus 1090 Insr~slddrl~~YdkAI~aLe~las~~~~D 1120 (1669)
++....+. ++-.-++|...|.+..+.+ |+
T Consensus 219 lKlg~~~~-~l~~~d~A~atl~qv~k~Y-P~ 247 (262)
T COG1729 219 LKLGVSLG-RLGNTDEACATLQQVIKRY-PG 247 (262)
T ss_pred HHHHHHHH-HhcCHHHHHHHHHHHHHHC-CC
Confidence 44332111 2226799999999999999 55
No 230
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=78.84 E-value=3.5 Score=29.18 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHhhccC
Q 000323 1407 GYLNLSLHRLLQNDWNEARLAIDAALKAAAS 1437 (1669)
Q Consensus 1407 a~LGD~L~q~Lqg~~~EAfaAYDKALkanp~ 1437 (1669)
..+|.+++. .+++++|..+|+++++..|.
T Consensus 5 ~~~a~~~~~--~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 5 YNLGNAYLK--LGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHH--HhhHHHHHHHHHHHHccCCC
Confidence 567888888 99999999999999998875
No 231
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=78.77 E-value=10 Score=47.92 Aligned_cols=100 Identities=15% Similarity=0.232 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHHHHHH
Q 000323 1032 KKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLC 1111 (1669)
Q Consensus 1032 dAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~aLe 1111 (1669)
..-..+|++|+.-.+.+.-+|..|+.+-.+.+...+.-..|.+++.+.|+|-.||-+...-. +...+ ..+.|+.++-
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~we--fe~n~-ni~saRalfl 164 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWE--FEINL-NIESARALFL 164 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhH--Hhhcc-chHHHHHHHH
Confidence 45567999999999999999999999988888788888999999999999999987777644 44444 4689999998
Q ss_pred HhhhcCCCCcchhhhhhHHHHHHHHHHHHHh
Q 000323 1112 RCASASDGDEMHASACILDLFLQMLQCFCMS 1142 (1669)
Q Consensus 1112 ~las~~~~Dr~~~Sa~iLDILL~LvqLY~qS 1142 (1669)
+...-+ |+- .++|...+.+..+-
T Consensus 165 rgLR~n-pds-------p~Lw~eyfrmEL~~ 187 (568)
T KOG2396|consen 165 RGLRFN-PDS-------PKLWKEYFRMELMY 187 (568)
T ss_pred HHhhcC-CCC-------hHHHHHHHHHHHHH
Confidence 888888 676 77887777776653
No 232
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=77.56 E-value=6.5 Score=47.72 Aligned_cols=130 Identities=14% Similarity=0.194 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHhhhcCCCCc----chhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhh
Q 000323 1102 AYDAALSVLCRCASASDGDE----MHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCL 1177 (1669)
Q Consensus 1102 ~YdkAI~aLe~las~~~~Dr----~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YL 1177 (1669)
.|.+|-..|.......|++. -+...+=.|.||++...+.++|+++.|-.-|+|-+= .-+ ......|..+.
T Consensus 9 ~Y~~~q~~F~~~v~~~Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf-----~~e-~~~~~~F~~~~ 82 (360)
T PF04910_consen 9 AYQEAQEQFYAAVQSHDPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALF-----AFE-RAFHPSFSPFR 82 (360)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHH-HHHHHHhhhhh
Confidence 45555555555544443332 012224489999999999999999999886666432 011 11112222211
Q ss_pred ccCCcchhhHHH-------HHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHH-HHHHHHHHHHHHHhh
Q 000323 1178 TISDKLIFWVCC-------VYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQ-RAIKLIEMAVNSVEL 1243 (1669)
Q Consensus 1178 t~sDR~~AWL~~-------iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPd-nalAL~smA~dYY~~ 1243 (1669)
-.-......|-+ .|+..|+.| ..+.+.||..-||++ ..-++.-||+ .++...-+ +|||..
T Consensus 83 ~~~~~g~~rL~~~~~eNR~fflal~r~i--~~L~~RG~~rTAlE~---~KlLlsLdp~~DP~g~ll~-ID~~AL 150 (360)
T PF04910_consen 83 SNLTSGNCRLDYRRPENRQFFLALFRYI--QSLGRRGCWRTALEW---CKLLLSLDPDEDPLGVLLF-IDYYAL 150 (360)
T ss_pred cccccCccccCCccccchHHHHHHHHHH--HHHHhcCcHHHHHHH---HHHHHhcCCCCCcchhHHH-HHHHHH
Confidence 111111111222 234445544 357788999999998 7778888888 77777666 799985
No 233
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=76.92 E-value=2.4e+02 Score=36.68 Aligned_cols=133 Identities=17% Similarity=0.229 Sum_probs=85.5
Q ss_pred chHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCC--CHH----HHHHHHHHHHhCCCCchHHHHHHHHHhhCCC
Q 000323 1008 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPT--SEI----LWITYLLIFYSNTNSVGKDDMFSYSVKHNEG 1081 (1669)
Q Consensus 1008 ~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPt--Sae----aWy~yl~lY~~~~~~eea~emlekAVelnP~ 1081 (1669)
+|...-+++|.-++..-.| ++.|-..|++++.+.-. =.+ +-+.++.+|.+.+... +...+.++++....
T Consensus 57 ~ea~~~l~la~iL~~eT~n----~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 57 QEARVRLRLASILLEETEN----LDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET 131 (608)
T ss_pred HHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc
Confidence 5668888888888887654 79999999999888744 222 2345577877777555 99999999988743
Q ss_pred ---CHHHH-------HHHHhcCCCcccchhhHHHHHHHHHHhhhcCC--CCcchhhhhhHHHHHHHHHHHHHhcCHHHHH
Q 000323 1082 ---SYALW-------LMYINSRTPLNHRLDAYDAALSVLCRCASASD--GDEMHASACILDLFLQMLQCFCMSGNTEKAI 1149 (1669)
Q Consensus 1082 ---NY~Lw-------lmYInsr~slddrl~~YdkAI~aLe~las~~~--~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI 1149 (1669)
+.|.| ..++..+ ++..|++.|...+.... +|. ..+.+.=++.++++ .+.+..+.++
T Consensus 132 ~~~~~w~~~frll~~~l~~~~~--------d~~~Al~~L~~~~~~a~~~~d~--~~~v~~~l~~~~l~--l~~~~~~d~~ 199 (608)
T PF10345_consen 132 YGHSAWYYAFRLLKIQLALQHK--------DYNAALENLQSIAQLANQRGDP--AVFVLASLSEALLH--LRRGSPDDVL 199 (608)
T ss_pred cCchhHHHHHHHHHHHHHHhcc--------cHHHHHHHHHHHHHHhhhcCCH--HHHHHHHHHHHHHH--hcCCCchhHH
Confidence 24422 2222222 67889999877665431 232 22222223333333 4567777788
Q ss_pred HHHHhhcc
Q 000323 1150 QRISRLLI 1157 (1669)
Q Consensus 1150 ~tl~rLEq 1157 (1669)
+.++++..
T Consensus 200 ~~l~~~~~ 207 (608)
T PF10345_consen 200 ELLQRAIA 207 (608)
T ss_pred HHHHHHHH
Confidence 88877754
No 234
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=76.27 E-value=6.4 Score=49.22 Aligned_cols=103 Identities=18% Similarity=0.191 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHHhCCCchhHHHHHHHHh-hcccCCccHHHHHHHHHhCCCCCc-hHHHHHHHHHHHHHHcCChHHHHH
Q 000323 1275 GLECSMNLLEKYIKLYPSCLELVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGVP-GIQCIWNQYVEYALQNGRHDFAAE 1352 (1669)
Q Consensus 1275 Dse~A~~LfdklLk~~P~d~eL~L~AAyL~-~K~m~~~A~svle~AL~~~PkNa~-g~~caW~QLIq~al~~en~d~Ai~ 1352 (1669)
+.+.|.++++...+.||..+=..+..++|. .++..++|+..|+.++....+=.+ -+.|.|....-+.. ..+|.+|..
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~-~~~w~~A~~ 326 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF-QHDWEEAAE 326 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH-HchHHHHHH
Confidence 778999999999999999988866667764 444589999999999853333333 46677766555555 448999888
Q ss_pred HHHH-------------HHHhhhhccc-cc-------ccchhhhccc
Q 000323 1353 LMDR-------------WFHSVWKVQY-SQ-------VEISDPLVAD 1378 (1669)
Q Consensus 1353 Lc~~-------------ff~gia~~Q~-~~-------deALDaLrkg 1378 (1669)
...+ |+.++++... +. ++|.+.+++.
T Consensus 327 ~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 327 YFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 7777 6666776666 44 5666666644
No 235
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=75.99 E-value=4 Score=49.43 Aligned_cols=106 Identities=14% Similarity=0.037 Sum_probs=78.7
Q ss_pred cchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHH-HHhcCH
Q 000323 1198 LPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCM-AVLNGL 1276 (1669)
Q Consensus 1198 LPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~l-I~LEDs 1276 (1669)
--|+-|+..|+..||+++ |.....-+|.|++....-|+.|.+. ..| .+-+|.
T Consensus 102 E~GN~yFKQgKy~EAIDC---Ys~~ia~~P~NpV~~~NRA~AYlk~------------------------K~FA~AE~DC 154 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDC---YSTAIAVYPHNPVYHINRALAYLKQ------------------------KSFAQAEEDC 154 (536)
T ss_pred HhhhhhhhccchhHHHHH---hhhhhccCCCCccchhhHHHHHHHH------------------------HHHHHHHHhH
Confidence 368889999999999999 9999999999999888877777763 122 233388
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHH
Q 000323 1277 ECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEY 1340 (1669)
Q Consensus 1277 e~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~ 1340 (1669)
+.|+.|=+.|++.|-.- .+++-..+ |..+|..-++.+|.++|++-+ +.-||...
T Consensus 155 ~~AiaLd~~Y~KAYSRR-----~~AR~~Lg-~~~EAKkD~E~vL~LEP~~~E----LkK~~a~i 208 (536)
T KOG4648|consen 155 EAAIALDKLYVKAYSRR-----MQARESLG-NNMEAKKDCETVLALEPKNIE----LKKSLARI 208 (536)
T ss_pred HHHHHhhHHHHHHHHHH-----HHHHHHHh-hHHHHHHhHHHHHhhCcccHH----HHHHHHHh
Confidence 88888888888876543 23443333 467888889999999999877 66665543
No 236
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=75.82 E-value=43 Score=38.99 Aligned_cols=93 Identities=17% Similarity=0.130 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHHHHHHHhhh-cCCcchhhhhhhchhhHhHHHHHHHHHH--hc-----CHHHHHHHHHHHHHhCCCchhH
Q 000323 1225 DEKQRAIKLIEMAVNSVELY-SNGESLEKETNLRSAHCFAVNHIWCMAV--LN-----GLECSMNLLEKYIKLYPSCLEL 1296 (1669)
Q Consensus 1225 ~EPdnalAL~smA~dYY~~~-~ndesla~~~~~kt~~~fKLN~IR~lI~--LE-----Dse~A~~LfdklLk~~P~d~eL 1296 (1669)
++++.+...++.|+++++.. ..+.. ..-...+++..+|.++. ++ +.++|.++.+.+-..+|.-+.+
T Consensus 50 ~~~~~a~~wL~~a~~~l~~~~~~~~~------~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~ 123 (278)
T PF08631_consen 50 DKYEEAVKWLQRAYDILEKPGKMDKL------SPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEV 123 (278)
T ss_pred CChHHHHHHHHHHHHHHHhhhhcccc------CCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHH
Confidence 46688888899999998641 11100 11223455555555543 22 7778999999999999999999
Q ss_pred -HHHHHHHhhcccCCccH-HHHHHHHHhCC
Q 000323 1297 -VLMKARLQKHDFGDLSS-VGFEEALIKWP 1324 (1669)
Q Consensus 1297 -~L~AAyL~~K~m~~~A~-svle~AL~~~P 1324 (1669)
+|+-..+.. .+..++. .++.+++..-+
T Consensus 124 ~~L~l~il~~-~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 124 FLLKLEILLK-SFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHhc-cCChhHHHHHHHHHHHhcc
Confidence 566666555 3344444 77777777655
No 237
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.72 E-value=1.4 Score=53.07 Aligned_cols=136 Identities=15% Similarity=0.090 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH--HHHHHH
Q 000323 1225 DEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKAR 1302 (1669)
Q Consensus 1225 ~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL--~L~AAy 1302 (1669)
.+|+....+ +|+ ++|.. +..|..... ++.++.-+.. .-.+.++.|+++|.++++++|..+.| .=..++
T Consensus 89 iepd~d~pq-~MG-ds~~e-~Tee~~eqa------~e~k~~A~eA-ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~ 158 (377)
T KOG1308|consen 89 IEPDTDAPQ-EMG-DSNAE-ITEEMMDQA------NDKKVQASEA-LNDGEFDTAIELFTSAIELNPPLAILYAKRASVF 158 (377)
T ss_pred cccCCCcch-hhc-hhhhh-hhHHHHHHH------HHHHHHHHHH-hcCcchhhhhcccccccccCCchhhhccccccee
Confidence 367777777 774 66654 333222222 3444432221 11447999999999999999999999 777788
Q ss_pred HhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCC
Q 000323 1303 LQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSH 1381 (1669)
Q Consensus 1303 L~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~ 1381 (1669)
|..++ +..++.-+..|++++|+.+.++ .|--++..+ .++|.++...++..- +..++++.++.-+-+.|
T Consensus 159 lkl~k-p~~airD~d~A~ein~Dsa~~y--kfrg~A~rl--lg~~e~aa~dl~~a~------kld~dE~~~a~lKeV~p 226 (377)
T KOG1308|consen 159 LKLKK-PNAAIRDCDFAIEINPDSAKGY--KFRGYAERL--LGNWEEAAHDLALAC------KLDYDEANSATLKEVFP 226 (377)
T ss_pred eeccC-CchhhhhhhhhhccCccccccc--chhhHHHHH--hhchHHHHHHHHHHH------hccccHHHHHHHHHhcc
Confidence 88888 9999999999999999999833 343333333 467888877765411 12666666666555444
No 238
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=74.67 E-value=1e+02 Score=35.70 Aligned_cols=188 Identities=18% Similarity=0.138 Sum_probs=106.6
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHH
Q 000323 1028 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAAL 1107 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI 1107 (1669)
......-+...+.=|..-+.+...|-.++.+- . -+|. .+.........|+.+++.-++-+ .|+.|.
T Consensus 101 ~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R------~---~~l~-~~~~~~~~~~~~l~~a~~aRk~g----~~~~A~ 166 (352)
T PF02259_consen 101 PQDLKSLLKRWRSRLPNMQDDFSVWEPILSLR------R---LVLS-LILLPEELAETWLKFAKLARKAG----NFQLAL 166 (352)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHH------H---HHHh-cccchhHHHHHHHHHHHHHHHCC----CcHHHH
Confidence 34455566666666766677777887776651 1 1111 11112223335555554332222 678888
Q ss_pred HHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhh----ccC---
Q 000323 1108 SVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCL----TIS--- 1180 (1669)
Q Consensus 1108 ~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YL----t~s--- 1180 (1669)
.++.++....+.. +.....+.+..+++.-.+|+-++||..|..+......+... ...-..+..-+ ...
T Consensus 167 ~~l~~~~~~~~~~----~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 241 (352)
T PF02259_consen 167 SALNRLFQLNPSS----ESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNID-SISNAELKSGLLESLEVISST 241 (352)
T ss_pred HHHHHHhccCCcc----cCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccc-cccHHHHhhcccccccccccc
Confidence 8887766644111 11247788999999999999999999888777522222110 00111111100 000
Q ss_pred --CcchhhHHHHHHHHhhccchHHHhhh------hhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHh
Q 000323 1181 --DKLIFWVCCVYLVIYRKLPDAVLQLL------ECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVE 1242 (1669)
Q Consensus 1181 --DR~~AWL~~iYllrYrvLPGd~y~q~------e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~ 1242 (1669)
+....-+ ..+...+.|.|.+.. +..+++... |....+.+|+..-+.+..| .+|.
T Consensus 242 ~~~~~~~~~----~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~k~~~~~a-~~~~ 303 (352)
T PF02259_consen 242 NLDKESKEL----KAKAFLLLAKWLDELYSKLSSESSDEILKY---YKEATKLDPSWEKAWHSWA-LFND 303 (352)
T ss_pred chhhhhHHH----HHHHHHHHHHHHHhhccccccccHHHHHHH---HHHHHHhChhHHHHHHHHH-HHHH
Confidence 1100111 122234567887777 678888888 8889999999999888876 4443
No 239
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.63 E-value=1.6 Score=52.59 Aligned_cols=117 Identities=17% Similarity=0.164 Sum_probs=87.0
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH--HHHHHHhcCCCcccchhhH
Q 000323 1026 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--LWLMYINSRTPLNHRLDAY 1103 (1669)
Q Consensus 1026 n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~--LwlmYInsr~slddrl~~Y 1103 (1669)
+..|.+++|+..|-+++++||.++.++..-+..|...+.+..+..-|-.|++++|++.. -|-=|++-- +-.+
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl------lg~~ 198 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL------LGNW 198 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHH------hhch
Confidence 45677899999999999999999999999999999999999999999999999998876 444444422 1155
Q ss_pred HHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHH
Q 000323 1104 DAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQ 1150 (1669)
Q Consensus 1104 dkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ 1150 (1669)
++|...|..+.+.. -| +..++|+-++.-..=.+.---+.|+.+.+
T Consensus 199 e~aa~dl~~a~kld-~d-E~~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 199 EEAAHDLALACKLD-YD-EANSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHHHHhcc-cc-HHHHHHHHHhccchhhhhhchhHHHHHHH
Confidence 77777775554433 23 34677777776666555555555665544
No 240
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=73.05 E-value=5 Score=48.65 Aligned_cols=58 Identities=14% Similarity=0.194 Sum_probs=51.7
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH
Q 000323 1026 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1084 (1669)
Q Consensus 1026 n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~ 1084 (1669)
.+-|+|+.|++-|++++.++|.++..+..-+..|.+.+.=..+..-|..||.++ +.|.
T Consensus 108 FKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~ 165 (536)
T KOG4648|consen 108 FKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYV 165 (536)
T ss_pred hhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHH
Confidence 456889999999999999999999999999999988887777889999999999 5555
No 241
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=72.54 E-value=32 Score=37.47 Aligned_cols=69 Identities=10% Similarity=0.076 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH
Q 000323 1011 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPT---SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1084 (1669)
Q Consensus 1011 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPt---SaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~ 1084 (1669)
+.+...|...|.. |+|+.|...|.....-.|. +..+-..++-.|+..++-+++...+++=++++|.+-.
T Consensus 11 ~~ly~~a~~~l~~-----~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 11 QELYQEAQEALQK-----GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHHHHHHHh-----CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 4555566655554 6789999999999999987 5677788888888999999999999999999998866
No 242
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.74 E-value=1.2e+02 Score=37.10 Aligned_cols=280 Identities=16% Similarity=0.094 Sum_probs=147.0
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHHHH
Q 000323 1030 GMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSV 1109 (1669)
Q Consensus 1030 ~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~a 1109 (1669)
+|..|+.++..-+|.+|.+-..+..++..||...+-..+-++|++--.+.|.-...-++|..+-..-. .|.+|+.+
T Consensus 25 ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~----i~ADALrV 100 (459)
T KOG4340|consen 25 RYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC----IYADALRV 100 (459)
T ss_pred hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc----ccHHHHHH
Confidence 57889999999999999999999999999988887788889999998888865444444444321111 23344443
Q ss_pred HHHhhhc----------------CCCCc-------ch-hhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCc
Q 000323 1110 LCRCASA----------------SDGDE-------MH-ASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDR 1165 (1669)
Q Consensus 1110 Le~las~----------------~~~Dr-------~~-~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE 1165 (1669)
+..+.-. ...|. ++ .|----|++.-..=|.-+.|+|+.|+++.+.-.+ .-|-+|
T Consensus 101 ~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlq--vsGyqp 178 (459)
T KOG4340|consen 101 AFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQ--VSGYQP 178 (459)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHh--hcCCCc
Confidence 3222110 00000 00 0000023444444566678889999887776666 667666
Q ss_pred ccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhc
Q 000323 1166 HSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYS 1245 (1669)
Q Consensus 1166 ~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ 1245 (1669)
-+.-+-...+...+|+.. -|.++-++.=|-+-..=-+.-|..-|..++ ---.|...|-.-|
T Consensus 179 -llAYniALaHy~~~qyas-ALk~iSEIieRG~r~HPElgIGm~tegiDv---------rsvgNt~~lh~Sa-------- 239 (459)
T KOG4340|consen 179 -LLAYNLALAHYSSRQYAS-ALKHISEIIERGIRQHPELGIGMTTEGIDV---------RSVGNTLVLHQSA-------- 239 (459)
T ss_pred -hhHHHHHHHHHhhhhHHH-HHHHHHHHHHhhhhcCCccCccceeccCch---------hcccchHHHHHHH--------
Confidence 455555555566666622 344444444433311000111111111110 0001222221100
Q ss_pred CCcchhhhhhhchhhHhHHHHHHHHHH--hcCHHHHHHHHHHHHHhCCCchh----HHHHHHHH-hhcccCCccHHHHHH
Q 000323 1246 NGESLEKETNLRSAHCFAVNHIWCMAV--LNGLECSMNLLEKYIKLYPSCLE----LVLMKARL-QKHDFGDLSSVGFEE 1318 (1669)
Q Consensus 1246 ndesla~~~~~kt~~~fKLN~IR~lI~--LEDse~A~~LfdklLk~~P~d~e----L~L~AAyL-~~K~m~~~A~svle~ 1318 (1669)
.--++| +...|. .++.+.|++ .++.++|..-. +.|.-.-| .+..-+.++..-+.-
T Consensus 240 --------------l~eAfN-LKaAIeyq~~n~eAA~e---aLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqF 301 (459)
T KOG4340|consen 240 --------------LVEAFN-LKAAIEYQLRNYEAAQE---ALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQF 301 (459)
T ss_pred --------------HHHHhh-hhhhhhhhcccHHHHHH---HhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHH
Confidence 111122 222232 447777774 55677775432 13333333 333337788877888
Q ss_pred HHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000323 1319 ALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1356 (1669)
Q Consensus 1319 AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ 1356 (1669)
.|.++| .| +..|--++-..-.++=++.|..++.+
T Consensus 302 LL~~nP--fP--~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 302 LLQQNP--FP--PETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHhcCC--CC--hHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 899988 33 23444444444445556666666655
No 243
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.57 E-value=67 Score=38.62 Aligned_cols=166 Identities=9% Similarity=0.069 Sum_probs=108.1
Q ss_pred hhhhhhhccch---HHHHHHHHHHHhcccc---cchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhCCCCchHHHH
Q 000323 999 VLNKLKQVELS---NEQCVEMALLILNQDA---NKLEGMKKALSLLSRALEAD-PTSEILWITYLLIFYSNTNSVGKDDM 1071 (1669)
Q Consensus 999 ~i~~le~~~~d---~qlWLelAl~~Lnq~~---n~~g~ydAALdLLsrALEIN-PtSaeaWy~yl~lY~~~~~~eea~em 1071 (1669)
.|+++|++..+ +++|=+---..++.-. .-.+.|.-.+++|...++-| |..+.+...+..+-++-|..+.+..+
T Consensus 155 ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~y 234 (366)
T KOG2796|consen 155 ILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKY 234 (366)
T ss_pred HHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHH
Confidence 35666666552 2666543322111111 22466888999999999999 77999999999999999987778888
Q ss_pred HH----HHHhhCCCCHH------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHH-HHHHHHHHH
Q 000323 1072 FS----YSVKHNEGSYA------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDL-FLQMLQCFC 1140 (1669)
Q Consensus 1072 le----kAVelnP~NY~------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDI-LL~LvqLY~ 1140 (1669)
|+ -+=+++.--.. -+.+|+.+. +|..|..+|.+.....+.+. .-+ -=+|.+||
T Consensus 235 f~~vek~~~kL~~~q~~~~V~~n~a~i~lg~n--------n~a~a~r~~~~i~~~D~~~~-------~a~NnKALcllY- 298 (366)
T KOG2796|consen 235 FQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQN--------NFAEAHRFFTEILRMDPRNA-------VANNNKALCLLY- 298 (366)
T ss_pred HHHHHHHHhhhhccchhHHHHhhhhhheeccc--------chHHHHHHHhhccccCCCch-------hhhchHHHHHHH-
Confidence 88 34344422222 567788888 88899888877666553331 000 11344444
Q ss_pred HhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhh
Q 000323 1141 MSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYR 1196 (1669)
Q Consensus 1141 qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYr 1196 (1669)
.|+...||.+|..+.+ ..|+. +..+.-++-||.+|++.|-
T Consensus 299 -lg~l~DAiK~~e~~~~-----~~P~~----------~l~es~~~nL~tmyEL~Ys 338 (366)
T KOG2796|consen 299 -LGKLKDALKQLEAMVQ-----QDPRH----------YLHESVLFNLTTMYELEYS 338 (366)
T ss_pred -HHHHHHHHHHHHHHhc-----cCCcc----------chhhhHHHHHHHHHHHHhh
Confidence 5888999999888776 33321 2234445689999998883
No 244
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.56 E-value=33 Score=41.28 Aligned_cols=114 Identities=17% Similarity=0.195 Sum_probs=80.1
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHH----HHHHhcCCCcccchhhH
Q 000323 1028 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALW----LMYINSRTPLNHRLDAY 1103 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~Lw----lmYInsr~slddrl~~Y 1103 (1669)
.|++..|..+|+.++..+|+++++-.-|+..|...+..+.++..+...=.-..+.-+.. .-.+.+-....
T Consensus 147 ~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~------ 220 (304)
T COG3118 147 AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP------ 220 (304)
T ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC------
Confidence 46679999999999999999999999999999999988877777665311111111111 11111111111
Q ss_pred HHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1104 DAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1104 dkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
+ +..|++....+ |+. .+.=+.+.+.|...|+++.|+..|=.|+.
T Consensus 221 -~-~~~l~~~~aad-Pdd-------~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 221 -E-IQDLQRRLAAD-PDD-------VEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred -C-HHHHHHHHHhC-CCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 23455556666 544 89999999999999999999998877775
No 245
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=69.61 E-value=42 Score=38.57 Aligned_cols=133 Identities=15% Similarity=0.059 Sum_probs=90.5
Q ss_pred CCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH-----------HHHhhhhccc---ccccchhh
Q 000323 1309 GDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR-----------WFHSVWKVQY---SQVEISDP 1374 (1669)
Q Consensus 1309 ~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~-----------ff~gia~~Q~---~~deALDa 1374 (1669)
|+....-..+.+.+.|.+.. ++.|..-+.+.|++.+|.++-.+ -++|.+.-|. +..++.-+
T Consensus 72 P~R~~Rea~~~~~~ApTvqn-----r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~t 146 (251)
T COG4700 72 PERHLREATEELAIAPTVQN-----RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQT 146 (251)
T ss_pred hhHHHHHHHHHHhhchhHHH-----HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHH
Confidence 77776666788888888777 67788888888999999888888 4455555554 55555555
Q ss_pred hcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcC
Q 000323 1375 LVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLIN 1454 (1669)
Q Consensus 1375 Lrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e 1454 (1669)
|.+.... + .+|= +-|-| -+++-.|+- .|+...|..||+-|+.+.|+- . .---|+.||...
T Consensus 147 Le~l~e~-----~----pa~r-----~pd~~-Ll~aR~laa--~g~~a~Aesafe~a~~~ypg~--~-ar~~Y~e~La~q 206 (251)
T COG4700 147 LEDLMEY-----N----PAFR-----SPDGH-LLFARTLAA--QGKYADAESAFEVAISYYPGP--Q-ARIYYAEMLAKQ 206 (251)
T ss_pred HHHHhhc-----C----CccC-----CCCch-HHHHHHHHh--cCCchhHHHHHHHHHHhCCCH--H-HHHHHHHHHHHh
Confidence 5543221 1 1211 22222 567889999 999999999999999999975 2 333599999987
Q ss_pred CCCCCcccchhh
Q 000323 1455 ESEPKEGAPISW 1466 (1669)
Q Consensus 1455 ~~dL~KAeqMS~ 1466 (1669)
+++-..-++.-.
T Consensus 207 gr~~ea~aq~~~ 218 (251)
T COG4700 207 GRLREANAQYVA 218 (251)
T ss_pred cchhHHHHHHHH
Confidence 764333344333
No 246
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=67.93 E-value=5.9 Score=27.97 Aligned_cols=32 Identities=0% Similarity=-0.098 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHhhCCC
Q 000323 1050 ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG 1081 (1669)
Q Consensus 1050 eaWy~yl~lY~~~~~~eea~emlekAVelnP~ 1081 (1669)
.+|+.++.+|...++.+.+...|++|++..|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35566666666666666666666666666553
No 247
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=67.66 E-value=6.5 Score=32.29 Aligned_cols=28 Identities=25% Similarity=0.227 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHhhcc
Q 000323 1407 GYLNLSLHRLLQNDWNEARLAIDAALKAAA 1436 (1669)
Q Consensus 1407 a~LGD~L~q~Lqg~~~EAfaAYDKALkanp 1436 (1669)
..||.++.+ .|++++|...|++||....
T Consensus 3 ~~Lg~~~~~--~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 3 NNLGRIYRQ--QGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHH--CT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--cCCHHHHHHHHHHHHHhcc
Confidence 578999999 9999999999999776554
No 248
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.67 E-value=53 Score=38.87 Aligned_cols=138 Identities=16% Similarity=0.172 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhcccc--cchhhH------------HHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhC-CCCchHH
Q 000323 1011 EQCVEMALLILNQDA--NKLEGM------------KKALSLLSRALEADPT------SEILWITYLLIFYSN-TNSVGKD 1069 (1669)
Q Consensus 1011 qlWLelAl~~Lnq~~--n~~g~y------------dAALdLLsrALEINPt------SaeaWy~yl~lY~~~-~~~eea~ 1069 (1669)
..+++.|.-++.-+. ...-.| ..|.+.|.++++|... ++--...++.+|-.- ..-+.+.
T Consensus 55 ~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI 134 (288)
T KOG1586|consen 55 DAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAI 134 (288)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHH
Confidence 566666666655443 112223 3444666666666543 444455667776322 2234466
Q ss_pred HHHHHHHhhCCCCHH----------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHH
Q 000323 1070 DMFSYSVKHNEGSYA----------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCF 1139 (1669)
Q Consensus 1070 emlekAVelnP~NY~----------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY 1139 (1669)
.+||.|.++-..... ++.+-...+ .|.+||.+||+.++.. -+..-+---+-|.||.-.=|+
T Consensus 135 ~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~le--------qY~~Ai~iyeqva~~s-~~n~LLKys~KdyflkAgLCh 205 (288)
T KOG1586|consen 135 AHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLE--------QYSKAIDIYEQVARSS-LDNNLLKYSAKDYFLKAGLCH 205 (288)
T ss_pred HHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHh-ccchHHHhHHHHHHHHHHHHh
Confidence 777777666533332 333333334 9999999999988865 232112223346666666566
Q ss_pred HHhcCH---HHHHHHHHhhcc
Q 000323 1140 CMSGNT---EKAIQRISRLLI 1157 (1669)
Q Consensus 1140 ~qSGny---dKAI~tl~rLEq 1157 (1669)
.-..+. ..|++.+..+.+
T Consensus 206 l~~~D~v~a~~ALeky~~~dP 226 (288)
T KOG1586|consen 206 LCKADEVNAQRALEKYQELDP 226 (288)
T ss_pred HhcccHHHHHHHHHHHHhcCC
Confidence 555553 444444444444
No 249
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=65.49 E-value=18 Score=44.52 Aligned_cols=127 Identities=19% Similarity=0.146 Sum_probs=80.0
Q ss_pred ccHHHHHHHHHhCCCC-CchHHHHHHHHHHHHHH---cCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCC
Q 000323 1311 LSSVGFEEALIKWPKG-VPGIQCIWNQYVEYALQ---NGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPES 1386 (1669)
Q Consensus 1311 ~A~svle~AL~~~PkN-a~g~~caW~QLIq~al~---~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es 1386 (1669)
+|+--+-.+|..-|.- ..-.+.+..||+-...+ .|+.++|++++.+. +...
T Consensus 158 damI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~-----------------l~~~-------- 212 (374)
T PF13281_consen 158 DAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPV-----------------LESD-------- 212 (374)
T ss_pred HHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHH-----------------Hhcc--------
Confidence 5554455566666533 23345567777777777 78888888888542 2211
Q ss_pred CCCCCcccccccccchhhHHHHHHHHHHHhhhc-------CHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCCCCCC
Q 000323 1387 TSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQN-------DWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPK 1459 (1669)
Q Consensus 1387 ~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg-------~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~~dL~ 1459 (1669)
....+|+| +++|-+|-.+... ..++|..||.+|...+|+- +--=|+|.-|.+.|.+..
T Consensus 213 -~~~~~d~~-----------gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~---Y~GIN~AtLL~~~g~~~~ 277 (374)
T PF13281_consen 213 -ENPDPDTL-----------GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY---YSGINAATLLMLAGHDFE 277 (374)
T ss_pred -CCCChHHH-----------HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc---cchHHHHHHHHHcCCccc
Confidence 11246766 8999877654332 5789999999999999643 444589999998887666
Q ss_pred cccchhhhHHHHHHHHhh
Q 000323 1460 EGAPISWQLKLLNSYLDR 1477 (1669)
Q Consensus 1460 KAeqMS~~~KtVsTYLDT 1477 (1669)
...++...-.+++.++=.
T Consensus 278 ~~~el~~i~~~l~~llg~ 295 (374)
T PF13281_consen 278 TSEELRKIGVKLSSLLGR 295 (374)
T ss_pred chHHHHHHHHHHHHHHHh
Confidence 554444322223444433
No 250
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=65.37 E-value=2.8e+02 Score=32.53 Aligned_cols=105 Identities=13% Similarity=0.106 Sum_probs=56.7
Q ss_pred hhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHH
Q 000323 1028 LEGMKKALSLLSRALEAD-PTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAA 1106 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEIN-PtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkA 1106 (1669)
-|+++.|..+|++|=... .-++...-.++.++|..|. +++.+- .+|.-+..++ .+|
T Consensus 6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~-----~l~~~~-----~~~~~a~~wL-------------~~a 62 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGK-----SLLSKK-----DKYEEAVKWL-------------QRA 62 (278)
T ss_pred hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHH-----HHHHcC-----CChHHHHHHH-------------HHH
Confidence 367788888888887766 6666666677777665553 222222 1222211111 344
Q ss_pred HHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHH---HHHHHHHhhc
Q 000323 1107 LSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTE---KAIQRISRLL 1156 (1669)
Q Consensus 1107 I~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnyd---KAI~tl~rLE 1156 (1669)
.++++...+.. ..-.+.+.-=.-++..++..|...+.++ +|+..++-++
T Consensus 63 ~~~l~~~~~~~-~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~ 114 (278)
T PF08631_consen 63 YDILEKPGKMD-KLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLE 114 (278)
T ss_pred HHHHHhhhhcc-ccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 55543321111 1111123333667888899999888755 4444444443
No 251
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=65.25 E-value=58 Score=37.41 Aligned_cols=126 Identities=16% Similarity=0.170 Sum_probs=77.5
Q ss_pred hhhccchHHHHHHHHHHHhc--ccccchhh------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHH
Q 000323 1003 LKQVELSNEQCVEMALLILN--QDANKLEG------MKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSY 1074 (1669)
Q Consensus 1003 le~~~~d~qlWLelAl~~Ln--q~~n~~g~------ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlek 1074 (1669)
+-....+-..||++|-++=. +++-+..+ --..+.-|..-+...++=--+||+-.+. ++..|+.-|..
T Consensus 57 ~l~~le~Y~kCielAa~Iq~i~~~e~k~~R~~a~~~s~~~l~~L~~~tk~S~dP~llYy~Wsr~-----~d~~A~~~fL~ 131 (203)
T PF11207_consen 57 LLEALEKYSKCIELAAQIQHIKQKERKTDRFRALLHSYQELERLQEETKNSQDPYLLYYHWSRF-----GDQEALRRFLQ 131 (203)
T ss_pred HHHHHHHHHHHHHHHhcCeeechHhHHHHHHHHHHHHHHHHHHHHHHHccCCCccHHHHHhhcc-----CcHHHHHHHHH
Confidence 33444555889999966422 22222222 2333444555555444444444443332 46677777776
Q ss_pred HHhhCCCCHH------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCC-cchhhhhhHHHHHHHHHHHHHhcCHHH
Q 000323 1075 SVKHNEGSYA------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD-EMHASACILDLFLQMLQCFCMSGNTEK 1147 (1669)
Q Consensus 1075 AVelnP~NY~------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~D-r~~~Sa~iLDILL~LvqLY~qSGnydK 1147 (1669)
+ +-.|.=.. |+-+|++.. =++|+.+|-+..+-.+++ . .=.|+|+.|+-+|...|++++
T Consensus 132 ~-E~~~~l~t~elq~aLAtyY~krD---------~~Kt~~ll~~~L~l~~~~~~-----~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 132 L-EGTPELETAELQYALATYYTKRD---------PEKTIQLLLRALELSNPDDN-----FNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred H-cCCCCCCCHHHHHHHHHHHHccC---------HHHHHHHHHHHHHhcCCCCC-----CCHHHHHHHHHHHHHhcchhh
Confidence 6 54443222 999999654 489999998877765344 1 117999999999999999998
Q ss_pred H
Q 000323 1148 A 1148 (1669)
Q Consensus 1148 A 1148 (1669)
|
T Consensus 197 A 197 (203)
T PF11207_consen 197 A 197 (203)
T ss_pred h
Confidence 8
No 252
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=64.42 E-value=21 Score=43.19 Aligned_cols=93 Identities=17% Similarity=0.114 Sum_probs=72.9
Q ss_pred hhHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHH
Q 000323 1259 AHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQY 1337 (1669)
Q Consensus 1259 ~~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QL 1337 (1669)
+.-.++++-..+..-+..++|..||.-+|++.|+.+++ .=++.+.++.+....|=..|-+||.+.|-|.. +-
T Consensus 115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse----AL--- 187 (472)
T KOG3824|consen 115 EAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE----AL--- 187 (472)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH----HH---
Confidence 34445554444344568899999999999999999999 66788888877677888999999999999999 52
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhh
Q 000323 1338 VEYALQNGRHDFAAELMDRWFHSV 1361 (1669)
Q Consensus 1338 Iq~al~~en~d~Ai~Lc~~ff~gi 1361 (1669)
..++.-.+.+..|=+++|.++
T Consensus 188 ---vnR~RT~plV~~iD~r~l~sv 208 (472)
T KOG3824|consen 188 ---VNRARTTPLVSAIDRRMLRSV 208 (472)
T ss_pred ---hhhhccchHHHHHHHHHHHHH
Confidence 556667788888888877665
No 253
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=63.85 E-value=30 Score=39.18 Aligned_cols=81 Identities=21% Similarity=0.197 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHhCCCchhH---H----HHHHHH----hhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHc
Q 000323 1276 LECSMNLLEKYIKLYPSCLEL---V----LMKARL----QKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQN 1344 (1669)
Q Consensus 1276 se~A~~LfdklLk~~P~d~eL---~----L~AAyL----~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~ 1344 (1669)
++.|++-+......+|.|++- | |-.+.+ +.+.|.++|+.-|++||.++|+.-...-|.=+-|..++.-.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 578999999999999999995 2 112222 23456789999999999999999886666666777777777
Q ss_pred CChHHHHHHHHH
Q 000323 1345 GRHDFAAELMDR 1356 (1669)
Q Consensus 1345 en~d~Ai~Lc~~ 1356 (1669)
.+..+|..+..+
T Consensus 87 ~d~~~A~~~F~k 98 (186)
T PF06552_consen 87 PDTAEAEEYFEK 98 (186)
T ss_dssp --HHHHHHHHHH
T ss_pred CChHHHHHHHHH
Confidence 777777777666
No 254
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=63.18 E-value=92 Score=32.79 Aligned_cols=100 Identities=12% Similarity=0.189 Sum_probs=68.1
Q ss_pred HHHHHHHhCC---CCHHHHHHHHHHHHhC----CCCchHHHHHHHHHhhCCCCHH---------HHHHHHhcCCCcccch
Q 000323 1037 LLSRALEADP---TSEILWITYLLIFYSN----TNSVGKDDMFSYSVKHNEGSYA---------LWLMYINSRTPLNHRL 1100 (1669)
Q Consensus 1037 LLsrALEINP---tSaeaWy~yl~lY~~~----~~~eea~emlekAVelnP~NY~---------LwlmYInsr~slddrl 1100 (1669)
.|...|+... +--++|+.|..-..+. +.......+++++++.-.++.. +|..|++.-
T Consensus 7 ~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~------- 79 (126)
T PF08311_consen 7 EFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS------- 79 (126)
T ss_dssp HHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB-------
T ss_pred HHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc-------
Confidence 3444444444 3456777776654432 3455577899999866544322 999999988
Q ss_pred hhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHH
Q 000323 1101 DAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRI 1152 (1669)
Q Consensus 1101 ~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl 1152 (1669)
+.+.++|..|.+..=+. .+-..+...+.++...|++++|-.++
T Consensus 80 ---~~~~~if~~l~~~~IG~------~~A~fY~~wA~~le~~~~~~~A~~I~ 122 (126)
T PF08311_consen 80 ---SDPREIFKFLYSKGIGT------KLALFYEEWAEFLEKRGNFKKADEIY 122 (126)
T ss_dssp ---SHHHHHHHHHHHHTTST------TBHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ---cCHHHHHHHHHHcCccH------HHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 48999998888865122 23677788899999999999998854
No 255
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=62.98 E-value=1.4e+02 Score=37.47 Aligned_cols=167 Identities=13% Similarity=0.093 Sum_probs=100.2
Q ss_pred cccccccccchhhhhhhh------hccchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCH-----HHHHHH
Q 000323 987 NRQSSFFRSRNGVLNKLK------QVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSE-----ILWITY 1055 (1669)
Q Consensus 987 ~~~~rYF~~~~d~i~~le------~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSa-----eaWy~y 1055 (1669)
.+..+|=.+..--..+|. ++----+.++++|..+= ....+.+++.+=.-||+.--+.+ -+..-+
T Consensus 54 s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e-----~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~ 128 (518)
T KOG1941|consen 54 SEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNE-----KLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSM 128 (518)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhhhHHHHHHHHhcCCCCCcccccchhhhhH
Confidence 566666554443333332 22222255555553321 22334677777778888766666 122223
Q ss_pred HHHHHhCCCCchHHHHHHHHHhhCCCCHH----------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCC-CCcchh
Q 000323 1056 LLIFYSNTNSVGKDDMFSYSVKHNEGSYA----------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASD-GDEMHA 1124 (1669)
Q Consensus 1056 l~lY~~~~~~eea~emlekAVelnP~NY~----------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~-~Dr~~~ 1124 (1669)
+..+..++.-+..++.||+|..++-.+.+ |..+|...+ +|++|+-+.++++.-.. -...+.
T Consensus 129 ~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~--------D~~Kal~f~~kA~~lv~s~~l~d~ 200 (518)
T KOG1941|consen 129 GNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK--------DYEKALFFPCKAAELVNSYGLKDW 200 (518)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH--------hhhHHhhhhHhHHHHHHhcCcCch
Confidence 44444555556688999999988755544 777888777 99999999998876430 011122
Q ss_pred hhhh-HHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcc
Q 000323 1125 SACI-LDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKL 1183 (1669)
Q Consensus 1125 Sa~i-LDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~ 1183 (1669)
+++- -=+++.|.=-|.+.|+...|-+ . ..| .+++-|..+|+-
T Consensus 201 ~~kyr~~~lyhmaValR~~G~LgdA~e----~-------C~E------a~klal~~Gdra 243 (518)
T KOG1941|consen 201 SLKYRAMSLYHMAVALRLLGRLGDAME----C-------CEE------AMKLALQHGDRA 243 (518)
T ss_pred hHHHHHHHHHHHHHHHHHhcccccHHH----H-------HHH------HHHHHHHhCChH
Confidence 3321 1245666667788888887755 1 233 677888899993
No 256
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=60.86 E-value=36 Score=39.79 Aligned_cols=165 Identities=12% Similarity=0.009 Sum_probs=93.7
Q ss_pred hcCHHHHHHHHHHHHHh-CCCchhH----HHHHHHHhhcccCCccHHHHHHHHHhCCCCCc-hHHHHHHHHHHHHHHcCC
Q 000323 1273 LNGLECSMNLLEKYIKL-YPSCLEL----VLMKARLQKHDFGDLSSVGFEEALIKWPKGVP-GIQCIWNQYVEYALQNGR 1346 (1669)
Q Consensus 1273 LEDse~A~~LfdklLk~-~P~d~eL----~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~-g~~caW~QLIq~al~~en 1346 (1669)
.|+.+..+....++++. .|.+... .|..+| |+....-|..|..+-.+.-+... +- -...+++.... ++=
T Consensus 14 ~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvay---Kn~i~~~R~s~R~i~sie~ke~~~~~-~~~~~~~~~yr-~ki 88 (244)
T smart00101 14 AERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAY---KNVIGARRASWRIISSIEQKEESRGN-EDHVASIKEYR-GKI 88 (244)
T ss_pred hcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHH---hhhhcccHHHHHHHhHHHHhhhccCc-hHHHHHHHHHH-HHH
Confidence 67888888888888887 4444433 666666 43233445777777766555321 11 11223333333 223
Q ss_pred hHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHH---HHHHhhhcC---
Q 000323 1347 HDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNL---SLHRLLQND--- 1420 (1669)
Q Consensus 1347 ~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD---~L~q~Lqg~--- 1420 (1669)
.++...+|.. .++++++..-|-.. ++. .-=|| .-+.|| -+.....|.
T Consensus 89 e~EL~~iC~e--------------il~lid~~Lip~~~--~~e-skVFy----------~KmKGDYyRYlaE~~~~~e~~ 141 (244)
T smart00101 89 ETELSKICDG--------------ILKLLESHLIPSAS--AAE-SKVFY----------LKMKGDYHRYLAEFKTGAERK 141 (244)
T ss_pred HHHHHHHHHH--------------HHHHHHHhCccccC--cHH-HHHHH----------HHHHHHHHHHHHHHcCcHHHH
Confidence 4566777744 55555544333110 100 00122 134555 222222333
Q ss_pred --HHHHHHHHHHHHhhc-----c-CCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHH
Q 000323 1421 --WNEARLAIDAALKAA-----A-SEHFKHCVREHAMLLLINESEPKEGAPISWQLKLL 1471 (1669)
Q Consensus 1421 --~~EAfaAYDKALkan-----p-~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~~~KtV 1471 (1669)
.++|..||++|+... | +-...+...||++|+-.--.+-.+|.++.. +++
T Consensus 142 ~~~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk--~af 198 (244)
T smart00101 142 EAAENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAK--QAF 198 (244)
T ss_pred HHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH--HHH
Confidence 568999999999753 3 233467789999999877777888888777 555
No 257
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=60.07 E-value=18 Score=36.01 Aligned_cols=48 Identities=15% Similarity=0.090 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCC
Q 000323 1034 ALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG 1081 (1669)
Q Consensus 1034 ALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~ 1081 (1669)
.+.-|...++.||++..+.|.++..+...+..+++.+-|...|+.+++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRD 54 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 345577777788888888888877777777777777777777777754
No 258
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=60.05 E-value=21 Score=40.87 Aligned_cols=72 Identities=22% Similarity=0.204 Sum_probs=49.8
Q ss_pred ccccccchhhhh------hhhhcc--chHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCC----HHHHHHHHH
Q 000323 990 SSFFRSRNGVLN------KLKQVE--LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS----EILWITYLL 1057 (1669)
Q Consensus 990 ~rYF~~~~d~i~------~le~~~--~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtS----aeaWy~yl~ 1057 (1669)
+=|.|++.++.. ++|..+ .+.++-..+|--|+..+. ++|+.+|-++|+..+.+ +++..-|+.
T Consensus 113 lYy~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~------~Kt~~ll~~~L~l~~~~~~~n~eil~sLas 186 (203)
T PF11207_consen 113 LYYHWSRFGDQEALRRFLQLEGTPELETAELQYALATYYTKRDP------EKTIQLLLRALELSNPDDNFNPEILKSLAS 186 (203)
T ss_pred HHHHhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCH------HHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 335567765533 455444 566777788888877765 77888888888877665 788888888
Q ss_pred HHHhCCCCch
Q 000323 1058 IFYSNTNSVG 1067 (1669)
Q Consensus 1058 lY~~~~~~ee 1067 (1669)
+|++.++.+.
T Consensus 187 ~~~~~~~~e~ 196 (203)
T PF11207_consen 187 IYQKLKNYEQ 196 (203)
T ss_pred HHHHhcchhh
Confidence 8877775443
No 259
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=60.04 E-value=8.9 Score=29.54 Aligned_cols=15 Identities=20% Similarity=0.468 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHhCC
Q 000323 1032 KKALSLLSRALEADP 1046 (1669)
Q Consensus 1032 dAALdLLsrALEINP 1046 (1669)
+.|..+|+++++.+|
T Consensus 17 ~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 17 DEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHCc
Confidence 333333333333333
No 260
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=59.66 E-value=1.6e+02 Score=39.06 Aligned_cols=99 Identities=19% Similarity=0.125 Sum_probs=60.0
Q ss_pred HHHHHHhCCCchhH-HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 000323 1283 LEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSV 1361 (1669)
Q Consensus 1283 fdklLk~~P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gi 1361 (1669)
++-.-++.-.+.+- .++++|+..++-+--|-..|.++ -+. -|++++-++.++|++|-+|+++
T Consensus 736 idI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~----gD~--------ksiVqlHve~~~W~eAFalAe~----- 798 (1081)
T KOG1538|consen 736 IDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKM----GDL--------KSLVQLHVETQRWDEAFALAEK----- 798 (1081)
T ss_pred HHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHh----ccH--------HHHhhheeecccchHhHhhhhh-----
Confidence 44444555555554 77888887776444444455443 122 2568888888899988888743
Q ss_pred hhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhcc
Q 000323 1362 WKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAA 1436 (1669)
Q Consensus 1362 a~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp 1436 (1669)
-|+++.|+| -.-+.-|-+ ..+++||..||-||=...-
T Consensus 799 -------------------------hPe~~~dVy-----------~pyaqwLAE--~DrFeEAqkAfhkAGr~~E 835 (1081)
T KOG1538|consen 799 -------------------------HPEFKDDVY-----------MPYAQWLAE--NDRFEEAQKAFHKAGRQRE 835 (1081)
T ss_pred -------------------------Ccccccccc-----------chHHHHhhh--hhhHHHHHHHHHHhcchHH
Confidence 245566766 222222333 4578888888888754433
No 261
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=59.63 E-value=1.2e+02 Score=37.71 Aligned_cols=182 Identities=12% Similarity=0.078 Sum_probs=96.1
Q ss_pred hHhHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCchhH-HHHHHHHhh---cccCCccHHHHHHHHHhCCCCCchHH
Q 000323 1260 HCFAVNHIWCMAVLNGLECSMNLLEKYIKL----YPSCLEL-VLMKARLQK---HDFGDLSSVGFEEALIKWPKGVPGIQ 1331 (1669)
Q Consensus 1260 ~~fKLN~IR~lI~LEDse~A~~LfdklLk~----~P~d~eL-~L~AAyL~~---K~m~~~A~svle~AL~~~PkNa~g~~ 1331 (1669)
.+.-++++..|-...|.+..++|.+.+-.. .+....+ .++|--|-. .+-.++|+.++..++.......+=..
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 455567676766677999999999987666 4555566 666666655 22266888999997777766666344
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH--HHHhhhhcccccccchhh----------------hcccC----CCCCCCCCCC
Q 000323 1332 CIWNQYVEYALQNGRHDFAAELMDR--WFHSVWKVQYSQVEISDP----------------LVADM----SHSSPESTST 1389 (1669)
Q Consensus 1332 caW~QLIq~al~~en~d~Ai~Lc~~--ff~gia~~Q~~~deALDa----------------Lrkgn----s~i~~es~s~ 1389 (1669)
|++=..-...|...+......+.+. ||..-+..+.....++++ +++.. .... .....
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg-~kg~~ 299 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLG-RKGSL 299 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHH-hhccc
Confidence 4443344444444333222222222 444444444322111111 11110 0000 00000
Q ss_pred -CCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcH-HHHHHHHHHHHhc
Q 000323 1390 -SDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHF-KHCVREHAMLLLI 1453 (1669)
Q Consensus 1390 -~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~-i~cLNNYAYFLS~ 1453 (1669)
-..|+. |. +-+ .=...|.|+.++|..|++++++.+|+.++ .-++.|.--|..+
T Consensus 300 ~~~~dYW-------d~--ATl--~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~ni~Li~~~ 354 (374)
T PF13281_consen 300 EKMQDYW-------DV--ATL--LEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLENIKLIRHF 354 (374)
T ss_pred cccccHH-------HH--HHH--HHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHH
Confidence 112211 11 112 22234589999999999999999997643 2344444444443
No 262
>PRK10941 hypothetical protein; Provisional
Probab=58.95 E-value=31 Score=40.74 Aligned_cols=58 Identities=19% Similarity=0.047 Sum_probs=53.9
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH
Q 000323 1027 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1084 (1669)
Q Consensus 1027 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~ 1084 (1669)
..++++.|+.+..+.|.++|+++.-|-.-+.+|.+.+-...+.+-|++-|+++|+.-.
T Consensus 193 ~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 193 EEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 3467899999999999999999999999999999999999999999999999998766
No 263
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=58.89 E-value=1.1e+02 Score=33.83 Aligned_cols=84 Identities=13% Similarity=-0.010 Sum_probs=65.6
Q ss_pred hcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHH
Q 000323 1273 LNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAA 1351 (1669)
Q Consensus 1273 LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai 1351 (1669)
-++.+.|+++|.+.+.++|+.+.. -=-+.-+..++-+++|..-+++|+++.-+-..-.+.++-|-.-.+.-.|+-|.|.
T Consensus 56 ~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR 135 (175)
T KOG4555|consen 56 AGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAAR 135 (175)
T ss_pred ccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHH
Confidence 459999999999999999999998 3344444555558999999999999987777766667767666777777877776
Q ss_pred HHHHH
Q 000323 1352 ELMDR 1356 (1669)
Q Consensus 1352 ~Lc~~ 1356 (1669)
.-.+.
T Consensus 136 ~DFe~ 140 (175)
T KOG4555|consen 136 ADFEA 140 (175)
T ss_pred HhHHH
Confidence 65544
No 264
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.41 E-value=34 Score=41.98 Aligned_cols=79 Identities=19% Similarity=0.100 Sum_probs=53.1
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC-CchHHHHHHHH------HhhCCCCHH-HHHHHHhcCCCcccc
Q 000323 1028 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN-SVGKDDMFSYS------VKHNEGSYA-LWLMYINSRTPLNHR 1099 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~-~eea~emlekA------VelnP~NY~-LwlmYInsr~slddr 1099 (1669)
.|-|+.|-..-.++|+|||++.=+-...+++.--.+. ++++.-|+++- -=+...||| .+++||...
T Consensus 188 ~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~a------ 261 (491)
T KOG2610|consen 188 CGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGA------ 261 (491)
T ss_pred hccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhccc------
Confidence 3568999999999999999976554444444321111 33444454432 224457899 778888887
Q ss_pred hhhHHHHHHHHHHhh
Q 000323 1100 LDAYDAALSVLCRCA 1114 (1669)
Q Consensus 1100 l~~YdkAI~aLe~la 1114 (1669)
.|+.|+++|.+..
T Consensus 262 --eye~aleIyD~ei 274 (491)
T KOG2610|consen 262 --EYEKALEIYDREI 274 (491)
T ss_pred --chhHHHHHHHHHH
Confidence 9999999997643
No 265
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=55.61 E-value=47 Score=43.86 Aligned_cols=184 Identities=19% Similarity=0.178 Sum_probs=108.3
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccc--ccccchhhhcccCCCCCCCCCCCCCc
Q 000323 1315 GFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQY--SQVEISDPLVADMSHSSPESTSTSDP 1392 (1669)
Q Consensus 1315 vle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~--~~deALDaLrkgns~i~~es~s~~vS 1392 (1669)
.|.+.++.-|+-.. .|..+.+++++.++.- |.++.|..+..+.+ .-.+.+++-+.....+ ...-.
T Consensus 465 afles~~~~~da~a----mw~~laelale~~nl~----iaercfaai~dvak~r~lhd~~eiadeas~~~-----ggdgt 531 (1636)
T KOG3616|consen 465 AFLESLEMGPDAEA----MWIRLAELALEAGNLF----IAERCFAAIGDVAKARFLHDILEIADEASIEI-----GGDGT 531 (1636)
T ss_pred HHHHhhccCccHHH----HHHHHHHHHHHhccch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-----CCCCc
Confidence 45666777787777 8999999999998864 44556777766665 2233333332221111 11236
Q ss_pred ccccccccchhhHHHHHHH-------HHHHhhhcCHHHHHHHHHHHHhhcc-------C--CcHHHHHHHHHHHHhcCCC
Q 000323 1393 EFSVSNRNQMDVMFGYLNL-------SLHRLLQNDWNEARLAIDAALKAAA-------S--EHFKHCVREHAMLLLINES 1456 (1669)
Q Consensus 1393 Dfy~~~~~Q~d~~fa~LGD-------~L~q~Lqg~~~EAfaAYDKALkanp-------~--N~~i~cLNNYAYFLS~e~~ 1456 (1669)
||| ++-+|.++|+- +... ++..+||.-.|..--+|+- . ..+...-+-|.-.|+-.+.
T Consensus 532 ~fy-----kvra~lail~kkfk~ae~ifle--qn~te~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~q 604 (1636)
T KOG3616|consen 532 DFY-----KVRAMLAILEKKFKEAEMIFLE--QNATEEAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQ 604 (1636)
T ss_pred hHH-----HHHHHHHHHHhhhhHHHHHHHh--cccHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCc
Confidence 899 99999999987 4444 7888889887755444431 1 2245666778878877776
Q ss_pred CCCccc---chhhhHHHHHHHHhh------hcccccccc-cchhhhccccchhhHHHHhhhcCCC-----CCChh---hH
Q 000323 1457 EPKEGA---PISWQLKLLNSYLDR------ARSLPYLKL-LPRQFINNIERPRLQQLIDNLLSPV-----SSDFS---LV 1518 (1669)
Q Consensus 1457 dL~KAe---qMS~~~KtVsTYLDT------AWILf~~~~-lARiYI~~i~k~rv~~liDqaL~~~-----S~dss---~~ 1518 (1669)
+-+.|| .-...+-.|.-||.. +....-.+. ++-.=| |+++-+.+++.. .+-+. +.
T Consensus 605 d~ka~elk~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~i-------l~~ia~alik~elydkagdlfeki~d~ 677 (1636)
T KOG3616|consen 605 DEKAAELKESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEI-------LEHIAAALIKGELYDKAGDLFEKIHDF 677 (1636)
T ss_pred hhhhhhhccccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHH-------HHHHHHHHHhhHHHHhhhhHHHHhhCH
Confidence 554443 222334555667764 122222222 333333 556556555551 21122 67
Q ss_pred HHHHhhc
Q 000323 1519 NLVLEVC 1525 (1669)
Q Consensus 1519 nkALE~W 1525 (1669)
+||||++
T Consensus 678 dkale~f 684 (1636)
T KOG3616|consen 678 DKALECF 684 (1636)
T ss_pred HHHHHHH
Confidence 8899977
No 266
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=54.79 E-value=16 Score=28.07 Aligned_cols=28 Identities=25% Similarity=0.600 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1130 DLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1130 DILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
|.++.+..+|...|++++|+..+.++..
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6789999999999999999999988874
No 267
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.08 E-value=6.7e+02 Score=33.03 Aligned_cols=73 Identities=15% Similarity=0.076 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCH---------HHHHHHHhcCCCcccchhh
Q 000323 1032 KKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY---------ALWLMYINSRTPLNHRLDA 1102 (1669)
Q Consensus 1032 dAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY---------~LwlmYInsr~slddrl~~ 1102 (1669)
......+-...+..|.++....+++.++...|..+.+.+|++.+|+ ..+ .++|.++.+. .
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~---~~~kQ~~~l~~fE~aw~~v~~~--------~ 318 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP---IRMKQVKSLMVFERAWLSVGQH--------Q 318 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHH--------H
Confidence 6667778888899999999999999999999988889999999998 122 2778888888 8
Q ss_pred HHHHHHHHHHhhh
Q 000323 1103 YDAALSVLCRCAS 1115 (1669)
Q Consensus 1103 YdkAI~aLe~las 1115 (1669)
|.+|-..+..+-.
T Consensus 319 ~~~aad~~~~L~d 331 (546)
T KOG3783|consen 319 YSRAADSFDLLRD 331 (546)
T ss_pred HHHHhhHHHHHHh
Confidence 8888777766533
No 268
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=51.46 E-value=51 Score=37.66 Aligned_cols=70 Identities=17% Similarity=0.053 Sum_probs=49.3
Q ss_pred HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1085 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1085 LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
+||+|-..+..-.++. -+.+|+..|++.+...+......+ =.-+++.+..|+...|++++|+.-+.+|..
T Consensus 124 lAWlyR~~~~~~~E~~-fl~~Al~~y~~a~~~e~~~~~~~~--~~~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 124 LAWLYRDLGDEENEKR-FLRKALEFYEEAYENEDFPIEGMD--EATLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHhhccCCHHHHHH-HHHHHHHHHHHHHHhCcCCCCCch--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 7788887774333333 678899999888876522100000 023667788999999999999999999996
No 269
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=50.98 E-value=76 Score=37.34 Aligned_cols=97 Identities=16% Similarity=0.071 Sum_probs=70.0
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH------HHHHHHhcCCCcccch
Q 000323 1027 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA------LWLMYINSRTPLNHRL 1100 (1669)
Q Consensus 1027 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~------LwlmYInsr~slddrl 1100 (1669)
+.|=.+-|..=|..+|.|+|.=++++-.+..|+..-++-..+.+.|..-.+++|.+.. +.++|-.
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~g--------- 147 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG--------- 147 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecC---------
Confidence 4566778888899999999999999988888888888888899999999999997654 4444432
Q ss_pred hhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHH
Q 000323 1101 DAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCF 1139 (1669)
Q Consensus 1101 ~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY 1139 (1669)
.|.-|.+-+-..+...+.|. . --+||++...-
T Consensus 148 -R~~LAq~d~~~fYQ~D~~DP-f-----R~LWLYl~E~k 179 (297)
T COG4785 148 -RYKLAQDDLLAFYQDDPNDP-F-----RSLWLYLNEQK 179 (297)
T ss_pred -chHhhHHHHHHHHhcCCCCh-H-----HHHHHHHHHhh
Confidence 24556655555556554442 1 24566665543
No 270
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=50.94 E-value=2.1e+02 Score=34.11 Aligned_cols=132 Identities=17% Similarity=0.208 Sum_probs=91.3
Q ss_pred cchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHH---HHHHHhCCC--------CchHHHHHHHH
Q 000323 1007 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITY---LLIFYSNTN--------SVGKDDMFSYS 1075 (1669)
Q Consensus 1007 ~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~y---l~lY~~~~~--------~eea~emlekA 1075 (1669)
+...|.-|++|+-+... ++|+.|+....+=+..+|+++.+=|.+ +..+...-. -..+..-|..-
T Consensus 68 ~~~~qa~l~l~yA~Yk~-----~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~ 142 (254)
T COG4105 68 PYSEQAQLDLAYAYYKN-----GEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKEL 142 (254)
T ss_pred cccHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHH
Confidence 33447777777776655 557999999999999999987654432 333332221 11245566666
Q ss_pred HhhCCCCHH---------------------HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHH
Q 000323 1076 VKHNEGSYA---------------------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQ 1134 (1669)
Q Consensus 1076 VelnP~NY~---------------------LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~ 1134 (1669)
|+--|++-. ++.+|++-+ +|..|+.=++++.+.+ ++ ...+.|.|..
T Consensus 143 i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~--------~~~AA~nR~~~v~e~y-~~----t~~~~eaL~~ 209 (254)
T COG4105 143 VQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRG--------AYVAAINRFEEVLENY-PD----TSAVREALAR 209 (254)
T ss_pred HHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc--------ChHHHHHHHHHHHhcc-cc----ccchHHHHHH
Confidence 776776643 788898888 8888888888888877 33 2356889999
Q ss_pred HHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1135 MLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1135 LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
|...|.+-|-.+.|-. ..++..
T Consensus 210 l~eaY~~lgl~~~a~~-~~~vl~ 231 (254)
T COG4105 210 LEEAYYALGLTDEAKK-TAKVLG 231 (254)
T ss_pred HHHHHHHhCChHHHHH-HHHHHH
Confidence 9999999998887744 444443
No 271
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.36 E-value=2e+02 Score=37.22 Aligned_cols=158 Identities=15% Similarity=0.052 Sum_probs=95.5
Q ss_pred chhhHhHHHHHHHHHH-hcCHHHHHHHHHHH---HHhCCCchhH------HHHHHHHhhcccCCccHHHHHHHHHhCCCC
Q 000323 1257 RSAHCFAVNHIWCMAV-LNGLECSMNLLEKY---IKLYPSCLEL------VLMKARLQKHDFGDLSSVGFEEALIKWPKG 1326 (1669)
Q Consensus 1257 kt~~~fKLN~IR~lI~-LEDse~A~~Lfdkl---Lk~~P~d~eL------~L~AAyL~~K~m~~~A~svle~AL~~~PkN 1326 (1669)
+++.-+-+.+...+.. ...++.|++-++++ ++.-|+--++ +|.-.|++..+-...+.+.+.+|+++.-..
T Consensus 43 ~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~ 122 (629)
T KOG2300|consen 43 LVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSV 122 (629)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC
Confidence 3444444444444444 44788888777664 5666765444 555556676654556779999999998765
Q ss_pred CchHHHHH-HHHHHHHHHcCChHHHHHHHHH-----------HHHhhhhc---cc-----ccccchhhhccc----CCCC
Q 000323 1327 VPGIQCIW-NQYVEYALQNGRHDFAAELMDR-----------WFHSVWKV---QY-----SQVEISDPLVAD----MSHS 1382 (1669)
Q Consensus 1327 a~g~~caW-~QLIq~al~~en~d~Ai~Lc~~-----------ff~gia~~---Q~-----~~deALDaLrkg----ns~i 1382 (1669)
+ +|.|.. .||++...-+.++..|++++.- ||.-+... +. +..+...++... ..-+
T Consensus 123 p-~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~ 201 (629)
T KOG2300|consen 123 P-YWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNIS 201 (629)
T ss_pred c-hhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccC
Confidence 5 788876 4999988888899999887543 44332221 11 222222222221 2222
Q ss_pred CCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhcCHHHHHHH
Q 000323 1383 SPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLA 1427 (1669)
Q Consensus 1383 ~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg~~~EAfaA 1427 (1669)
++....+..-+|| --+-++||. +.|+..-+.-+
T Consensus 202 sdk~~~E~LkvFy-----------l~lql~yy~-~~gq~rt~k~~ 234 (629)
T KOG2300|consen 202 SDKTQKEMLKVFY-----------LVLQLSYYL-LPGQVRTVKPA 234 (629)
T ss_pred CChHHHHHHHHHH-----------HHHHHHHHh-cccchhhhHHH
Confidence 2333455777777 777788887 56666555544
No 272
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=49.23 E-value=41 Score=36.83 Aligned_cols=67 Identities=16% Similarity=0.161 Sum_probs=55.4
Q ss_pred HHHHHHhcCCCcccchhhHHHHHHHHHHhhh-cCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCC
Q 000323 1085 LWLMYINSRTPLNHRLDAYDAALSVLCRCAS-ASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSN 1163 (1669)
Q Consensus 1085 LwlmYInsr~slddrl~~YdkAI~aLe~las-~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~ 1163 (1669)
|+|-.+.++.+.+ --+-|.+||..++ ..+.++ .|-+++|+==+..-|+|++++.-+++|+. .+..
T Consensus 38 lAwaLV~S~~~~d-----v~~GI~iLe~l~~~~~~~~r-------Re~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~ 103 (149)
T KOG3364|consen 38 LAWALVRSRDTED-----VQEGIVILEDLLKSAHPERR-------RECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPN 103 (149)
T ss_pred HHHHHHcccchHH-----HHHhHHHHHHHhhhcCcccc-------hhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCC
Confidence 8899999994444 3679999999997 554556 78999999999999999999999999998 6655
Q ss_pred Cc
Q 000323 1164 DR 1165 (1669)
Q Consensus 1164 sE 1165 (1669)
|.
T Consensus 104 n~ 105 (149)
T KOG3364|consen 104 NR 105 (149)
T ss_pred cH
Confidence 54
No 273
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.20 E-value=7.5e+02 Score=32.19 Aligned_cols=128 Identities=13% Similarity=0.133 Sum_probs=87.2
Q ss_pred chHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHhCCCCc-----hHHHHHHHHHh
Q 000323 1008 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALE-----ADPTSEILWITYLLIFYSNTNSV-----GKDDMFSYSVK 1077 (1669)
Q Consensus 1008 ~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALE-----INPtSaeaWy~yl~lY~~~~~~e-----ea~emlekAVe 1077 (1669)
-+.+.-..++.-++....-...+.+.|+..|+.+.+ +.-..+.+.+.|+.+|++..... .+..+|.+|++
T Consensus 242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~ 321 (552)
T KOG1550|consen 242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE 321 (552)
T ss_pred cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence 344555555566666644445778999999999988 11225557889999998875433 38899999998
Q ss_pred hCCCCHH--HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHH----HhcCHHHHHH
Q 000323 1078 HNEGSYA--LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFC----MSGNTEKAIQ 1150 (1669)
Q Consensus 1078 lnP~NY~--LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~----qSGnydKAI~ 1150 (1669)
+...+-. |+.+|..-. +..++.+|...|..++..- . .+..+.+..||. ...+..+|..
T Consensus 322 ~g~~~a~~~lg~~~~~g~-----~~~d~~~A~~yy~~Aa~~G--~--------~~A~~~la~~y~~G~gv~r~~~~A~~ 385 (552)
T KOG1550|consen 322 LGNPDAQYLLGVLYETGT-----KERDYRRAFEYYSLAAKAG--H--------ILAIYRLALCYELGLGVERNLELAFA 385 (552)
T ss_pred cCCchHHHHHHHHHHcCC-----ccccHHHHHHHHHHHHHcC--C--------hHHHHHHHHHHHhCCCcCCCHHHHHH
Confidence 8765544 777776655 2236789999997766543 3 456666666665 4567888877
No 274
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=45.20 E-value=4.8e+02 Score=34.27 Aligned_cols=86 Identities=19% Similarity=0.307 Sum_probs=57.5
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCchhH-HHHHHHHhhcccCCccHHHHHHHHHhC-CCC-CchHHHHHHHHHHHHHH
Q 000323 1267 IWCMAVLNGLECSMNLLEKYIKLYPSCLEL-VLMKARLQKHDFGDLSSVGFEEALIKW-PKG-VPGIQCIWNQYVEYALQ 1343 (1669)
Q Consensus 1267 IR~lI~LEDse~A~~LfdklLk~~P~d~eL-~L~AAyL~~K~m~~~A~svle~AL~~~-PkN-a~g~~caW~QLIq~al~ 1343 (1669)
++||+.+ ..++--.+..++++.|=.|+.. --.+.++++.+ ..++.+.|.+|+..- |+. -.++-..|-+|+.+.
T Consensus 106 ~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEkik-~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i-- 181 (711)
T COG1747 106 LQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEKIK-KSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI-- 181 (711)
T ss_pred HHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHHhc-hhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--
Confidence 5566665 6677778888888888888888 55566666654 667777777777543 322 226777887777543
Q ss_pred cCChHHHHHHHHH
Q 000323 1344 NGRHDFAAELMDR 1356 (1669)
Q Consensus 1344 ~en~d~Ai~Lc~~ 1356 (1669)
.++.|...++..+
T Consensus 182 ~dD~D~fl~l~~k 194 (711)
T COG1747 182 GDDKDFFLRLQKK 194 (711)
T ss_pred cccHHHHHHHHHH
Confidence 4466666666655
No 275
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=44.59 E-value=2.3e+02 Score=35.10 Aligned_cols=130 Identities=15% Similarity=0.071 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHH--hCCCCchHHHHHHHHHhhCCC-CHHH
Q 000323 1011 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEI--LWITYLLIFY--SNTNSVGKDDMFSYSVKHNEG-SYAL 1085 (1669)
Q Consensus 1011 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSae--aWy~yl~lY~--~~~~~eea~emlekAVelnP~-NY~L 1085 (1669)
+.=++.|...++. ++|.+|..+|..+++-=|.... .+..+...|. .+..-.+|.+.|++.....-. .-.-
T Consensus 132 ~~~~~~a~~l~n~-----~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~ 206 (379)
T PF09670_consen 132 DREWRRAKELFNR-----YDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQER 206 (379)
T ss_pred HHHHHHHHHHHhc-----CCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHH
Confidence 3445555555555 5689999999999986344443 5555555554 333455677777777655311 0001
Q ss_pred HHHHHhcCCCcccchhhHHHHHHHHHHhhhcCC--CC-cchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1086 WLMYINSRTPLNHRLDAYDAALSVLCRCASASD--GD-EMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1086 wlmYInsr~slddrl~~YdkAI~aLe~las~~~--~D-r~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
|... ...+.+..+........ .. .+....+++.-|+..++==...|+|+.|+.+++|++.
T Consensus 207 ~~l~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lE 269 (379)
T PF09670_consen 207 EGLK------------ELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALE 269 (379)
T ss_pred HHHH------------HHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 1111 11223333322222110 01 0112455565666666655678899999999999986
No 276
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=44.17 E-value=1.7e+02 Score=30.07 Aligned_cols=43 Identities=9% Similarity=0.151 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHH
Q 000323 1030 GMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFS 1073 (1669)
Q Consensus 1030 ~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emle 1073 (1669)
....++..|.+++..++.++.+...|+.+|.... +....++++
T Consensus 22 ~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~ 64 (140)
T smart00299 22 LLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLD 64 (140)
T ss_pred cHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHH
Confidence 3577888899999998888888888888887654 334445555
No 277
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=44.03 E-value=1.6e+02 Score=35.36 Aligned_cols=57 Identities=21% Similarity=0.248 Sum_probs=49.4
Q ss_pred HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1085 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1085 LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
++-.|+..+ .|+.+++.+.++....|-+ +.++.+|+..|.+.|+..+||..+.++..
T Consensus 159 lae~~~~~~--------~~~~~~~~l~~Li~~dp~~--------E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 159 LAEALIACG--------RADAVIEHLERLIELDPYD--------EPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHhcc--------cHHHHHHHHHHHHhcCccc--------hHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 556666666 7899999999999988544 89999999999999999999999999986
No 278
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=43.94 E-value=42 Score=30.85 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=27.8
Q ss_pred HHHHHHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHH
Q 000323 1408 YLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCV 1444 (1669)
Q Consensus 1408 ~LGD~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cL 1444 (1669)
+|..++|. .|++++|....|.+|+..|+| .++.
T Consensus 6 ~lAig~yk--l~~Y~~A~~~~~~lL~~eP~N--~Qa~ 38 (53)
T PF14853_consen 6 YLAIGHYK--LGEYEKARRYCDALLEIEPDN--RQAQ 38 (53)
T ss_dssp HHHHHHHH--TT-HHHHHHHHHHHHHHTTS---HHHH
T ss_pred HHHHHHHH--hhhHHHHHHHHHHHHhhCCCc--HHHH
Confidence 67888999 999999999999999999999 5554
No 279
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.72 E-value=3.4e+02 Score=33.05 Aligned_cols=92 Identities=21% Similarity=0.226 Sum_probs=66.3
Q ss_pred CHHHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhccc---
Q 000323 1082 SYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIP--- 1158 (1669)
Q Consensus 1082 NY~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~--- 1158 (1669)
+..+-.-|-+++.-..+.. ++|+..+.....-. +.+ .-|-.-.|-+|++.+...|+|+++..++..|++-
T Consensus 25 dVDlENQYYnsK~l~e~~p---~~Al~sF~kVlelE-gEK---geWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkS 97 (440)
T KOG1464|consen 25 DVDLENQYYNSKGLKEDEP---KEALSSFQKVLELE-GEK---GEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKS 97 (440)
T ss_pred CcchHhhhhccccccccCH---HHHHHHHHHHHhcc-ccc---chhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 3347777888886666544 89999998877665 454 4467778899999999999999999999888862
Q ss_pred ccC-CCCcccchHHHHHHhhccCCc
Q 000323 1159 ATG-SNDRHSLFLSDILTCLTISDK 1182 (1669)
Q Consensus 1159 Al~-g~sE~~lSLsKi~~YLt~sDR 1182 (1669)
|+. .-+ ..|+..|..|...+..
T Consensus 98 AVTrNyS--EKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 98 AVTRNYS--EKSINSILDYISTSKN 120 (440)
T ss_pred HHhcccc--HHHHHHHHHHHhhhhh
Confidence 221 223 3467777777775544
No 280
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=43.44 E-value=1e+02 Score=34.12 Aligned_cols=60 Identities=15% Similarity=0.164 Sum_probs=49.5
Q ss_pred HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1085 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1085 LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
++.+|.+-+ .++.|+..|.++.... . -.-.++|++|.++.+....|++..+..-|.+.+.
T Consensus 42 l~~~~~~~G--------d~~~A~k~y~~~~~~~-~----~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 42 LADHYCKIG--------DLEEALKAYSRARDYC-T----SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHhh--------hHHHHHHHHHHHhhhc-C----CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 888999988 8899999998864432 1 2346699999999999999999999888887776
No 281
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=43.40 E-value=70 Score=38.41 Aligned_cols=71 Identities=15% Similarity=0.337 Sum_probs=54.4
Q ss_pred HHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCch-HHHHHHHHHhhCCCCHHHHHH
Q 000323 1014 VEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVG-KDDMFSYSVKHNEGSYALWLM 1088 (1669)
Q Consensus 1014 LelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~ee-a~emlekAVelnP~NY~Lwlm 1088 (1669)
+.++.-++..++. -.-||.+..-||.+||.+=.+|-.-..+...++.+.- -.+++...++-+|.||.+|..
T Consensus 46 m~YfRAI~~~~E~----S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHH 117 (318)
T KOG0530|consen 46 MDYFRAIIAKNEK----SPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHH 117 (318)
T ss_pred HHHHHHHHhcccc----CHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHH
Confidence 4444556666552 1889999999999999999999887776655554322 458899999999999999864
No 282
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.89 E-value=81 Score=41.08 Aligned_cols=101 Identities=17% Similarity=0.179 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhh----cccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHh
Q 000323 1129 LDLFLQMLQCFCMSGNTEKAIQRISRL----LIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQ 1204 (1669)
Q Consensus 1129 LDILL~LvqLY~qSGnydKAI~tl~rL----Eq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~ 1204 (1669)
.|.||+|.+...++|+.+.|-.-|.|- +.....--++ .+..--.-|.-...| .-|+..||.| --+.
T Consensus 284 vdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~--~sg~cRL~y~~~eNR------~FyL~l~r~m--~~l~ 353 (665)
T KOG2422|consen 284 VDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIP--FSGNCRLPYIYPENR------QFYLALFRYM--QSLA 353 (665)
T ss_pred hhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccc--ccccccCcccchhhH------HHHHHHHHHH--HHHH
Confidence 899999999999999988776643332 1100000011 111111233333444 2346667766 3567
Q ss_pred hhhhhhhhhccCCCCcccchhhHH-HHHHHHHHHHHHHhh
Q 000323 1205 LLECEKELFAIDWPPVQLEDDEKQ-RAIKLIEMAVNSVEL 1243 (1669)
Q Consensus 1205 q~e~~KEAf~I~W~y~~vlk~EPd-nalAL~smA~dYY~~ 1243 (1669)
+.||..-|+.. +.-+++-||. +++++... +|+|..
T Consensus 354 ~RGC~rTA~E~---cKlllsLdp~eDPl~~l~~-ID~~AL 389 (665)
T KOG2422|consen 354 QRGCWRTALEW---CKLLLSLDPSEDPLGILYL-IDIYAL 389 (665)
T ss_pred hcCChHHHHHH---HHHHhhcCCcCCchhHHHH-HHHHHH
Confidence 78899999888 8888888998 88888887 788874
No 283
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.58 E-value=2.6e+02 Score=38.27 Aligned_cols=52 Identities=15% Similarity=0.358 Sum_probs=41.8
Q ss_pred HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhh
Q 000323 1085 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRL 1155 (1669)
Q Consensus 1085 LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rL 1155 (1669)
+|..|+..+ .|++|++. ++..|+ ++.-|++.-+++|.+.++|..|-+.+...
T Consensus 364 vWk~yLd~g--------~y~kAL~~-----ar~~p~------~le~Vl~~qAdf~f~~k~y~~AA~~yA~t 415 (911)
T KOG2034|consen 364 VWKTYLDKG--------EFDKALEI-----ARTRPD------ALETVLLKQADFLFQDKEYLRAAEIYAET 415 (911)
T ss_pred HHHHHHhcc--------hHHHHHHh-----ccCCHH------HHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 999999999 99999983 333244 45778999999999999999997755443
No 284
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=42.48 E-value=4.3e+02 Score=30.42 Aligned_cols=124 Identities=17% Similarity=0.141 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC----CCchHHHHHHHHHhh-CCCC---
Q 000323 1011 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNT----NSVGKDDMFSYSVKH-NEGS--- 1082 (1669)
Q Consensus 1011 qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~----~~eea~emlekAVel-nP~N--- 1082 (1669)
.....++..+.....- ..+...|+.+|. ...+...+.+-+.|+.+|.... ...++...|++|++. ++..
T Consensus 74 ~a~~~l~~~y~~g~gv-~~~~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~ 150 (292)
T COG0790 74 AALALLGQMYGAGKGV-SRDKTKAADWYR--CAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALA 150 (292)
T ss_pred HHHHHHHHHHHhccCc-cccHHHHHHHHH--HHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHH
Confidence 6777777777777542 345799999999 6677788999999999987633 455688999999998 4443
Q ss_pred -HHHHHHHHhcCCCcccchhhHH--HHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHH----HHhcCHHHHHH
Q 000323 1083 -YALWLMYINSRTPLNHRLDAYD--AALSVLCRCASASDGDEMHASACILDLFLQMLQCF----CMSGNTEKAIQ 1150 (1669)
Q Consensus 1083 -Y~LwlmYInsr~slddrl~~Yd--kAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY----~qSGnydKAI~ 1150 (1669)
+.|.++|.+-. .. .-..++ .|+..|.+++.... .+..+.+-.+| ....|+.+|+.
T Consensus 151 ~~~l~~~~~~g~--~~-~~~~~~~~~A~~~~~~aa~~~~----------~~a~~~lg~~y~~G~Gv~~d~~~A~~ 212 (292)
T COG0790 151 MYRLGLAYLSGL--QA-LAVAYDDKKALYLYRKAAELGN----------PDAQLLLGRMYEKGLGVPRDLKKAFR 212 (292)
T ss_pred HHHHHHHHHcCh--hh-hcccHHHHhHHHHHHHHHHhcC----------HHHHHHHHHHHHcCCCCCcCHHHHHH
Confidence 44889998864 11 112344 89999988877652 23333333444 44567888877
No 285
>PF12854 PPR_1: PPR repeat
Probab=42.40 E-value=34 Score=28.15 Aligned_cols=27 Identities=11% Similarity=0.481 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhh
Q 000323 1129 LDLFLQMLQCFCMSGNTEKAIQRISRL 1155 (1669)
Q Consensus 1129 LDILL~LvqLY~qSGnydKAI~tl~rL 1155 (1669)
.-.+-.|++.||..|++++|++.++++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 457889999999999999999966554
No 286
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=41.64 E-value=1.2e+02 Score=36.82 Aligned_cols=92 Identities=13% Similarity=0.044 Sum_probs=59.3
Q ss_pred hHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhcc-c-CCccHHHHHHHHHhCCCCCchHHHHHHHH
Q 000323 1260 HCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHD-F-GDLSSVGFEEALIKWPKGVPGIQCIWNQY 1337 (1669)
Q Consensus 1260 ~~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~-m-~~~A~svle~AL~~~PkNa~g~~caW~QL 1337 (1669)
...++-+.++|+..++++.|..+++.+=.....+.-..| -++|.... + ...-...++..+..+|++.. ++.+|
T Consensus 168 ~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l-~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~----aa~~l 242 (304)
T COG3118 168 SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGL-QAQIELLEQAAATPEIQDLQRRLAADPDDVE----AALAL 242 (304)
T ss_pred chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHhCCCCHH----HHHHH
Confidence 445566678888877888887766654333333322232 23222211 2 33445678888888898888 88888
Q ss_pred HHHHHHcCChHHHHHHHHH
Q 000323 1338 VEYALQNGRHDFAAELMDR 1356 (1669)
Q Consensus 1338 Iq~al~~en~d~Ai~Lc~~ 1356 (1669)
.......|+.+.|..++-.
T Consensus 243 A~~~~~~g~~e~Ale~Ll~ 261 (304)
T COG3118 243 ADQLHLVGRNEAALEHLLA 261 (304)
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 8888888888888877744
No 287
>TIGR01987 HI0074 nucleotidyltransferase substrate binding protein, HI0074 family. The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins. It forms a complex with HI0073, encoded by the adjacent gene and containing a nucleotidyltransferase nucleotide binding domain (pfam01909).
Probab=41.50 E-value=2.1e+02 Score=30.55 Aligned_cols=86 Identities=20% Similarity=0.282 Sum_probs=60.8
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHH----------------HHHHHHHHHHhCCC----CchHHHHHHHHHhhCC-CCHHHH
Q 000323 1028 LEGMKKALSLLSRALEADPTSEI----------------LWITYLLIFYSNTN----SVGKDDMFSYSVKHNE-GSYALW 1086 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtSae----------------aWy~yl~lY~~~~~----~eea~emlekAVelnP-~NY~Lw 1086 (1669)
.++|..||..|+.+++.+|.+.. +|-.+-.+....|- ...-.+.++.|.+..= ++-..|
T Consensus 2 ~~nf~kAl~~L~~a~~~~~~~~~~~~~g~IqrFE~t~ELaWK~lK~~L~~~G~~~~~~~spr~~ir~A~~~glI~d~~~W 81 (123)
T TIGR01987 2 FESFEQALMQLSDANWFDLTNDITIIDGAIQKFEFTFELAWKLMKRYLAQEGINDIGAYSPKDVLKEAFRAGLIGDESLW 81 (123)
T ss_pred HHHHHHHHHHHHHHHhcCccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHcCCcCCHHHH
Confidence 36789999999999999888776 66665554443332 2334688888876653 456699
Q ss_pred HHHHhcCCCcccchhhHHHHHHHHHHhh
Q 000323 1087 LMYINSRTPLNHRLDAYDAALSVLCRCA 1114 (1669)
Q Consensus 1087 lmYInsr~slddrl~~YdkAI~aLe~la 1114 (1669)
.-+++.|..... .|..+.|.+++....
T Consensus 82 ~~ml~~RN~tsH-tYde~~a~~i~~~I~ 108 (123)
T TIGR01987 82 IAMLDDRNITSH-TYDQEKAREIYAQIR 108 (123)
T ss_pred HHHHHHhCcccc-cCCHHHHHHHHHHHH
Confidence 999999977765 335566888886654
No 288
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=40.85 E-value=1.7e+02 Score=31.42 Aligned_cols=87 Identities=17% Similarity=0.247 Sum_probs=54.8
Q ss_pred HHHHHHHHHHH----hCCCCchHHHHHHHHHhhCCCCH---------HHHHHHHhcCCCcccchhhHHHHHHHHHHhhhc
Q 000323 1050 ILWITYLLIFY----SNTNSVGKDDMFSYSVKHNEGSY---------ALWLMYINSRTPLNHRLDAYDAALSVLCRCASA 1116 (1669)
Q Consensus 1050 eaWy~yl~lY~----~~~~~eea~emlekAVelnP~NY---------~LwlmYInsr~slddrl~~YdkAI~aLe~las~ 1116 (1669)
.+|..|..-.. ..+...+....++++++.--+.. .+|..|++.- ++++++|.-|.+.
T Consensus 23 ~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~----------~dp~~if~~L~~~ 92 (125)
T smart00777 23 DLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC----------DEPRELFQFLYSK 92 (125)
T ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHC
Confidence 45555544333 11223446677777775422221 1999999765 6678888888887
Q ss_pred CCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHH
Q 000323 1117 SDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRI 1152 (1669)
Q Consensus 1117 ~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl 1152 (1669)
.=+.+ +--.+-..+.++-..|++.+|-+++
T Consensus 93 ~IG~~------~AlfYe~~A~~lE~~g~~~~A~~iy 122 (125)
T smart00777 93 GIGTK------LALFYEEWAQLLEAAGRYKKADEVY 122 (125)
T ss_pred Ccchh------hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 62222 2344556788999999999998844
No 289
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.95 E-value=1.1e+02 Score=35.38 Aligned_cols=76 Identities=11% Similarity=0.012 Sum_probs=54.1
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHH
Q 000323 1261 CFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEY 1340 (1669)
Q Consensus 1261 ~fKLN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~ 1340 (1669)
..++.+-|.++..+..+.|+.+++..........--.|.+.-|..++..++|+..|++|+...+..+. -|++++
T Consensus 127 l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~------~~~lqm 200 (207)
T COG2976 127 LAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPAA------REILQM 200 (207)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHH------HHHHHh
Confidence 33445445555577889999998888776655554577777776666688999999999999966665 245555
Q ss_pred HH
Q 000323 1341 AL 1342 (1669)
Q Consensus 1341 al 1342 (1669)
-+
T Consensus 201 KL 202 (207)
T COG2976 201 KL 202 (207)
T ss_pred HH
Confidence 44
No 290
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=39.41 E-value=44 Score=39.76 Aligned_cols=56 Identities=20% Similarity=0.083 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH
Q 000323 1029 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1084 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~ 1084 (1669)
++++.|+..-++.|..||.++.-|---+.+|.+++-...+.+-++..|+++|+.-.
T Consensus 195 ~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 195 LQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred hchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 45699999999999999999999999999999999888899999999999997655
No 291
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=39.11 E-value=33 Score=26.02 Aligned_cols=27 Identities=15% Similarity=0.411 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1131 LFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1131 ILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
+|-.|++.|++.|++++|.+.+.++..
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 366899999999999999998888774
No 292
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=38.50 E-value=5.1e+02 Score=30.69 Aligned_cols=49 Identities=12% Similarity=0.136 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHH
Q 000323 1130 DLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY 1191 (1669)
Q Consensus 1130 DILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iY 1191 (1669)
+-+++|++|.-+.|+|+.|+..+..+-. ..+..+ |+..+|.++.++|+.
T Consensus 2 e~~v~~Aklaeq~eRyddm~~~mk~~~~--~~~~~e-----------Lt~EERnLLSvayKn 50 (244)
T smart00101 2 EENVYMAKLAEQAERYEEMVEFMEKVAK--TVDSEE-----------LTVEERNLLSVAYKN 50 (244)
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHh--hcCCcc-----------CCHHHHHHHHHHHhh
Confidence 3578899999999999999997777653 211112 567888888888877
No 293
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=37.60 E-value=42 Score=33.12 Aligned_cols=57 Identities=9% Similarity=0.003 Sum_probs=41.4
Q ss_pred hhhHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH
Q 000323 1028 LEGMKKALSLLSRALEADPTS---------EILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1084 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINPtS---------aeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~ 1084 (1669)
.++|..|++.|.++++.-... ..++..++.+....|..+++.+.++.||+++-.+-+
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D 76 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGD 76 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC
Confidence 356778877777666654332 456677788888999999999999999987754433
No 294
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=37.46 E-value=4.3e+02 Score=31.09 Aligned_cols=160 Identities=16% Similarity=0.090 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCH--HHHHHHHHhhcccccCCCCcccchHHHHHHhhcc
Q 000323 1102 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNT--EKAIQRISRLLIPATGSNDRHSLFLSDILTCLTI 1179 (1669)
Q Consensus 1102 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGny--dKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~ 1179 (1669)
.|++|+++|.+.+... -+..+-.+..|+-++|++.|...+.- +..+.+|-.|.... ....| . ..+.
T Consensus 5 ky~eAidLL~~Ga~~l--l~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~-~~~~p-~--------r~~f 72 (260)
T PF04190_consen 5 KYDEAIDLLYSGALIL--LKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLF-PPEEP-E--------RKKF 72 (260)
T ss_dssp -HHHHHHHHHHHHHHH--HHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS--TT-T-T--------HHHH
T ss_pred cHHHHHHHHHHHHHHH--HHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-CCCcc-h--------HHHH
Confidence 7999999997766654 11225567799999999999998742 22334555555322 11222 1 1112
Q ss_pred CCcchhhHH---HHH-HHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhh
Q 000323 1180 SDKLIFWVC---CVY-LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETN 1255 (1669)
Q Consensus 1180 sDR~~AWL~---~iY-llrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~ 1255 (1669)
-++++.|-. +.+ +...+.+.|..|-..+...+|-.- -++.++|+.....+-+ ...+.. +.++
T Consensus 73 i~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H-----fl~~~~~~~~~~~~ll-~~~~~~--~~~~------ 138 (260)
T PF04190_consen 73 IKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERH-----FLLGTDPSAFAYVMLL-EEWSTK--GYPS------ 138 (260)
T ss_dssp HHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHH-----HHTS-HHHHHHHHHHH-HHHHHH--TSS-------
T ss_pred HHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHH-----HHhcCChhHHHHHHHH-HHHHHh--cCCc------
Confidence 233344662 122 666777788888777655555220 0234555554442111 222221 1111
Q ss_pred hchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 000323 1256 LRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKL 1289 (1669)
Q Consensus 1256 ~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~ 1289 (1669)
-...|-...+-+|..+++..-|..+|+.+++.
T Consensus 139 --e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 139 --EADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ---HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred --chhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 11233334456666678899999999999887
No 295
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=36.78 E-value=2.3e+02 Score=36.00 Aligned_cols=212 Identities=17% Similarity=0.121 Sum_probs=111.5
Q ss_pred CHHHHHHHHHHHHhCCC-------------CchHHHHHHHHHhhCCCCHHH----------HHHHHhcCCCcccchhhHH
Q 000323 1048 SEILWITYLLIFYSNTN-------------SVGKDDMFSYSVKHNEGSYAL----------WLMYINSRTPLNHRLDAYD 1104 (1669)
Q Consensus 1048 SaeaWy~yl~lY~~~~~-------------~eea~emlekAVelnP~NY~L----------wlmYInsr~slddrl~~Yd 1104 (1669)
-+-++|.++.+|..++. ..++.+.|+.||++--.|-.| +-.|=+.+.+.= -+-.|+
T Consensus 134 e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyY-lLGdf~ 212 (639)
T KOG1130|consen 134 ESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYY-LLGDFD 212 (639)
T ss_pred hhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceee-eeccHH
Confidence 46789999999997765 345778999999887665541 112222222110 011788
Q ss_pred HHHHHHHH---hhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCC
Q 000323 1105 AALSVLCR---CASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISD 1181 (1669)
Q Consensus 1105 kAI~aLe~---las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sD 1181 (1669)
.||.+-.. ++..+ +|+ |.---..--+..++.+-|+++-||+-+.+-...|++=.+ + . ...+.|...+.
T Consensus 213 ~ai~~H~~RL~ia~ef-GDr----AaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~-r--~-vEAQscYSLgN 283 (639)
T KOG1130|consen 213 QAIHFHKLRLEIAQEF-GDR----AAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGN-R--T-VEAQSCYSLGN 283 (639)
T ss_pred HHHHHHHHHHHHHHHh-hhH----HHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcc-h--h-HHHHHHHHhhh
Confidence 88877643 45556 665 222233445678899999999999976655543333111 1 0 01222222222
Q ss_pred cchhhHHHHHHHHhhccchHHHhhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhH
Q 000323 1182 KLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHC 1261 (1669)
Q Consensus 1182 R~~AWL~~iYllrYrvLPGd~y~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~ 1261 (1669)
. ..| +-+|++-. -|.+. -++| .+-+.+--..+.+-.++| ..|+. .+. .+-+-.
T Consensus 284 t--ytl----l~e~~kAI--~Yh~r-----HLaI----AqeL~DriGe~RacwSLg-na~~a-lg~--------h~kAl~ 336 (639)
T KOG1130|consen 284 T--YTL----LKEVQKAI--TYHQR-----HLAI----AQELEDRIGELRACWSLG-NAFNA-LGE--------HRKALY 336 (639)
T ss_pred H--HHH----HHHHHHHH--HHHHH-----HHHH----HHHHHHhhhhHHHHHHHH-HHHHh-hhh--------HHHHHH
Confidence 2 111 11121110 01110 0111 111122224555566664 44444 332 244455
Q ss_pred hHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCchhH
Q 000323 1262 FAVNHIWCMAV----LNGLECSMNLLEKYIKLYPSCLEL 1296 (1669)
Q Consensus 1262 fKLN~IR~lI~----LEDse~A~~LfdklLk~~P~d~eL 1296 (1669)
|...|++.-.. .+.++...+|.+..|.+-..+..+
T Consensus 337 fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds~~ 375 (639)
T KOG1130|consen 337 FAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDSLV 375 (639)
T ss_pred HHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcccC
Confidence 66666665443 336788889999999888777644
No 296
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=36.56 E-value=69 Score=37.29 Aligned_cols=61 Identities=15% Similarity=0.057 Sum_probs=55.2
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHH
Q 000323 1026 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALW 1086 (1669)
Q Consensus 1026 n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~Lw 1086 (1669)
.+.+....|+.--++||+++|+..-++..-+.+|.++...+++.+-|.+..+.+|.+..+-
T Consensus 145 iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear 205 (271)
T KOG4234|consen 145 IKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAR 205 (271)
T ss_pred HHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHH
Confidence 4567789999999999999999999999999999999989999999999999999887643
No 297
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=36.45 E-value=2.5e+02 Score=34.08 Aligned_cols=82 Identities=12% Similarity=0.116 Sum_probs=42.4
Q ss_pred HHHHHhhccCCcHHHHHHHHHHHHhcCCCCCCcccchhhhHHHHHHHHhhhcccccccccchhhhccccchhhHHHHhhh
Q 000323 1428 IDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDRARSLPYLKLLPRQFINNIERPRLQQLIDNL 1507 (1669)
Q Consensus 1428 YDKALkanp~N~~i~cLNNYAYFLS~e~~dL~KAeqMS~~~KtVsTYLDTAWILf~~~~lARiYI~~i~k~rv~~liDqa 1507 (1669)
--+.+...|.| +-.||=-.-++-.+. .|...-.+.. .+.+.+ --++..-|..-.|| +--+.+++
T Consensus 210 t~~~I~~vP~N--eSaWnYL~G~l~~d~-gl~s~s~vv~---f~~~l~---~~~~~~sP~lla~l-------~d~~~e~~ 273 (318)
T KOG0530|consen 210 TKDKILLVPNN--ESAWNYLKGLLELDS-GLSSDSKVVS---FVENLY---LQLPKRSPFLLAFL-------LDLYAEDA 273 (318)
T ss_pred HHHHHHhCCCC--ccHHHHHHHHHHhcc-CCcCCchHHH---HHHHHh---hccCCCChhHHHHH-------HHHHHHHH
Confidence 34567889999 999986666665522 2554444333 112211 01122223223333 22222777
Q ss_pred cCCCCCChhhHHHHHhhc
Q 000323 1508 LSPVSSDFSLVNLVLEVC 1525 (1669)
Q Consensus 1508 L~~~S~dss~~nkALE~W 1525 (1669)
|.+.++..+..++|++.|
T Consensus 274 l~~~~~~~~~a~~a~~ly 291 (318)
T KOG0530|consen 274 LAYKSSAEELARKAVKLY 291 (318)
T ss_pred hhccccchHHHHHHHHHH
Confidence 777655555566676666
No 298
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=35.50 E-value=93 Score=32.88 Aligned_cols=64 Identities=22% Similarity=0.268 Sum_probs=45.4
Q ss_pred HHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHH---HHHHHHHhCCCCc-----------hHHHHHHHHHhhCCC
Q 000323 1016 MALLILNQDANKLEGMKKALSLLSRALEADPTSEILWI---TYLLIFYSNTNSV-----------GKDDMFSYSVKHNEG 1081 (1669)
Q Consensus 1016 lAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy---~yl~lY~~~~~~e-----------ea~emlekAVelnP~ 1081 (1669)
+|+.++.. |++-+||.+..-.+-.++++..+|. .-+.+|+...... ...+.|.+|+.++|+
T Consensus 2 ~A~~~~~r-----GnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~ 76 (111)
T PF04781_consen 2 KAKDYFAR-----GNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD 76 (111)
T ss_pred hHHHHHHc-----cCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh
Confidence 44555444 6779999999999999999996653 3366776444311 245888999999998
Q ss_pred CHH
Q 000323 1082 SYA 1084 (1669)
Q Consensus 1082 NY~ 1084 (1669)
+-.
T Consensus 77 ~A~ 79 (111)
T PF04781_consen 77 SAH 79 (111)
T ss_pred HHH
Confidence 833
No 299
>KOG4147 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.35 E-value=26 Score=36.72 Aligned_cols=42 Identities=29% Similarity=0.412 Sum_probs=32.0
Q ss_pred ccCCcCccccCCCcccccccccccccCCCCCCCCCCCCCceEEEecCCC
Q 000323 14 VDIQPRNTTQSNSLKSFEQNRVTFKSNTPGWFPSSGKNDNLVISFSDDD 62 (1669)
Q Consensus 14 ~~~~~r~~~q~~~~k~~~~n~~~~~s~~~~~~~~~g~~~nlvi~fsdd~ 62 (1669)
.|||.|+|.-|--+--|+-=.+=++ |+-..-+||||+|-+||
T Consensus 45 ~~Iq~~~sl~pfRn~kfDtLKIy~~-------Ah~sKT~nLvinldhDd 86 (127)
T KOG4147|consen 45 QDIQLRTSLPPFRNYKFDTLKIYHQ-------AHKSKTNNLVINLDHDD 86 (127)
T ss_pred HhcccCCCCCccccccccceeeehh-------hhhcccceEEEeccCCc
Confidence 4799999998877667765444333 46678899999999887
No 300
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=35.27 E-value=57 Score=24.89 Aligned_cols=27 Identities=19% Similarity=0.501 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1131 LFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1131 ILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
.+-.|+..|++.|++++|++.+.++..
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 366899999999999999999988874
No 301
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=35.21 E-value=47 Score=26.62 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHhhc
Q 000323 1407 GYLNLSLHRLLQNDWNEARLAIDAALKAA 1435 (1669)
Q Consensus 1407 a~LGD~L~q~Lqg~~~EAfaAYDKALkan 1435 (1669)
.-|+.+|+. .|+++||...|++|+..-
T Consensus 6 ~~la~~~~~--~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 6 NNLANAYRA--QGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHH--CT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--hhhcchhhHHHHHHHHHH
Confidence 456777777 999999999999999653
No 302
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=34.93 E-value=1.2e+02 Score=30.30 Aligned_cols=59 Identities=17% Similarity=0.050 Sum_probs=45.2
Q ss_pred hhhhhccchHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhCCC
Q 000323 1001 NKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS--EILWITYLLIFYSNTN 1064 (1669)
Q Consensus 1001 ~~le~~~~d~qlWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtS--aeaWy~yl~lY~~~~~ 1064 (1669)
..+++.|.|.+..+.+|..++.. |+++.|++.|-.++..+|+. ..+--.++.+|--.+.
T Consensus 13 ~~~a~~P~D~~ar~~lA~~~~~~-----g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 13 AALAANPDDLDARYALADALLAA-----GDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHSTT-HHHHHHHHHHHHHT-----T-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 47788889999999999999988 45799999999999999875 6666666666655554
No 303
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.66 E-value=1.3e+03 Score=33.08 Aligned_cols=225 Identities=15% Similarity=0.161 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHH------------HHHhhCCCCHH--HHHHHHhcCC
Q 000323 1029 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFS------------YSVKHNEGSYA--LWLMYINSRT 1094 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emle------------kAVelnP~NY~--LwlmYInsr~ 1094 (1669)
|.++.-+.+|..+|-+-..--..+.+++-+|++.+ ++...+.++ +|++-. --| |--+|.+-.
T Consensus 1293 GyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFwsRvNipKviRA~eqa--hlW~ElvfLY~~y~- 1368 (1666)
T KOG0985|consen 1293 GYFEELISLLEAGLGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSRVNIPKVIRAAEQA--HLWSELVFLYDKYE- 1368 (1666)
T ss_pred CcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhcchHHHHHHHHHH--HHHHHHHHHHHhhh-
Q ss_pred CcccchhhHHHHHHHHHHhhhcCCCCcchhhh-------hhHHHHHHHHHHHH---------------------------
Q 000323 1095 PLNHRLDAYDAALSVLCRCASASDGDEMHASA-------CILDLFLQMLQCFC--------------------------- 1140 (1669)
Q Consensus 1095 slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa-------~iLDILL~LvqLY~--------------------------- 1140 (1669)
.||-|.... |.... .+-.|..| .=+++++..+++|.
T Consensus 1369 -------eyDNAa~tm--m~h~t-eaw~~~~FKdii~kVaNvElyYkAi~FYl~~~P~llnDlL~vL~pRlDh~r~v~~f 1438 (1666)
T KOG0985|consen 1369 -------EYDNAALTM--MEHPT-EAWDHGQFKDIITKVANVELYYKAIQFYLDFHPLLLNDLLTVLSPRLDHTRTVSIF 1438 (1666)
T ss_pred -------hhhHHHHHH--HhCCh-hhhhhhhHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHHHHhcccccCchHHHHHH
Q ss_pred ----------------HhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHH-HHHhhccchHHH
Q 000323 1141 ----------------MSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY-LVIYRKLPDAVL 1203 (1669)
Q Consensus 1141 ----------------qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iY-llrYrvLPGd~y 1203 (1669)
++.|....-+.++.|+ ++-..= +-.-..|-.|-.-..-.+|-=-.+| +++||.+-+-+|
T Consensus 1439 ~K~~~lpLikpyl~~vq~~Nn~avNealn~l~---ieeEDy-~~Lr~sid~~D~FD~i~LAq~lEkH~L~efrriaAyly 1514 (1666)
T KOG0985|consen 1439 SKAGQLPLIKPYLRAVQSLNNKAVNEALNDLL---IEEEDY-QGLRDSIDAYDNFDNIGLAQRLEKHELVEFRRIAAYLY 1514 (1666)
T ss_pred HhcCCCcccHHHHHHHHhcchHHHHHHHHHHh---hhHHHH-HHHHHhhhhhcchhHHHHHHHhhhhhhHHHHHHHHHHH
Q ss_pred hhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhh-----hhchhhHhHHHHHHHHHHhcCHHH
Q 000323 1204 QLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKET-----NLRSAHCFAVNHIWCMAVLNGLEC 1278 (1669)
Q Consensus 1204 ~q~e~~KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~-----~~kt~~~fKLN~IR~lI~LEDse~ 1278 (1669)
-.+++-|.-..+ .---.+..+|+.|-+. .++-+++++. ....-.||.-.+..||-++ +.+-
T Consensus 1515 k~n~rW~qSiel------------~Kkd~lyKDame~Aa~-S~~~~lae~Ll~~F~e~g~~ecFaa~Ly~cYdLl-rpd~ 1580 (1666)
T KOG0985|consen 1515 KGNNRWKQSIEL------------CKKDKLYKDAMETAAE-SRDTELAEELLQYFLEEGKRECFAACLYTCYDLL-RPDV 1580 (1666)
T ss_pred hccchHHHHHHH------------hhhhhHHHHHHHHHHh-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc-ChHH
Q ss_pred HHHHHHH
Q 000323 1279 SMNLLEK 1285 (1669)
Q Consensus 1279 A~~Lfdk 1285 (1669)
++++..+
T Consensus 1581 vlElaW~ 1587 (1666)
T KOG0985|consen 1581 VLELAWR 1587 (1666)
T ss_pred HHHHHHH
No 304
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=34.54 E-value=9.9e+02 Score=29.67 Aligned_cols=130 Identities=18% Similarity=0.206 Sum_probs=75.4
Q ss_pred HHHHHHHHhcccccchhhHHHHHHHHHHHHHh----CC----CCHHHHHHHHHHHHhCCCCchHHHHHHHHHhh----C-
Q 000323 1013 CVEMALLILNQDANKLEGMKKALSLLSRALEA----DP----TSEILWITYLLIFYSNTNSVGKDDMFSYSVKH----N- 1079 (1669)
Q Consensus 1013 WLelAl~~Lnq~~n~~g~ydAALdLLsrALEI----NP----tSaeaWy~yl~lY~~~~~~eea~emlekAVel----n- 1079 (1669)
.|++|....+.+ +++.|..+|.+.|.- +- .-.....+++.+|...+......+.....-++ .
T Consensus 6 sle~a~~~v~~~-----~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk 80 (421)
T COG5159 6 SLELANNAVKSN-----DIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTK 80 (421)
T ss_pred hHHHHHHhhhhh-----hHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcc
Confidence 377777777664 468999999999866 11 23456778899998888644433322211111 0
Q ss_pred CCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhh
Q 000323 1080 EGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRL 1155 (1669)
Q Consensus 1080 P~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rL 1155 (1669)
|...- |.-++-...-+|++.+.+++.-|+.- +|+.+-|-=+++=-.++.||-++|.|..||.-|+-+
T Consensus 81 ~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA---------~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 81 PKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWA---------DREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 00000 34444444444444443333333322 222233333566667889999999999999988777
Q ss_pred c
Q 000323 1156 L 1156 (1669)
Q Consensus 1156 E 1156 (1669)
.
T Consensus 152 l 152 (421)
T COG5159 152 L 152 (421)
T ss_pred H
Confidence 6
No 305
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=34.01 E-value=2.1e+03 Score=33.43 Aligned_cols=82 Identities=16% Similarity=0.101 Sum_probs=57.1
Q ss_pred hhhHHHHHHHHHHHHHhCC---CCHHHHHHHHH-HHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhH
Q 000323 1028 LEGMKKALSLLSRALEADP---TSEILWITYLL-IFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAY 1103 (1669)
Q Consensus 1028 ~g~ydAALdLLsrALEINP---tSaeaWy~yl~-lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~Y 1103 (1669)
.+-|.-|+..|.++ .+.+ +--+.+|.++. +|...+++.++.-.... ..+.|.=+.--++--.++ .+
T Consensus 1396 c~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~sl~~qil~~e~~g--------~~ 1465 (2382)
T KOG0890|consen 1396 CKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADPSLYQQILEHEASG--------NW 1465 (2382)
T ss_pred hHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCccHHHHHHHHHhhc--------cH
Confidence 35567777777776 3333 34567777787 88888887776554443 455665555667777777 78
Q ss_pred HHHHHHHHHhhhcCCCC
Q 000323 1104 DAALSVLCRCASASDGD 1120 (1669)
Q Consensus 1104 dkAI~aLe~las~~~~D 1120 (1669)
..|+..|+++.... |+
T Consensus 1466 ~da~~Cye~~~q~~-p~ 1481 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD-PD 1481 (2382)
T ss_pred HHHHHHHHHhhcCC-Cc
Confidence 89999999998877 55
No 306
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=33.79 E-value=43 Score=27.52 Aligned_cols=25 Identities=4% Similarity=-0.003 Sum_probs=13.5
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHH
Q 000323 1052 WITYLLIFYSNTNSVGKDDMFSYSV 1076 (1669)
Q Consensus 1052 Wy~yl~lY~~~~~~eea~emlekAV 1076 (1669)
|..++.+|.+.+.-+++.++|++|+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555555555555555533
No 307
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=33.54 E-value=4.3e+02 Score=32.13 Aligned_cols=91 Identities=12% Similarity=0.111 Sum_probs=60.7
Q ss_pred ccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHH----HHHhhCCCCHHHHHHHHhcCCCccc
Q 000323 1023 QDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFS----YSVKHNEGSYALWLMYINSRTPLNH 1098 (1669)
Q Consensus 1023 q~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emle----kAVelnP~NY~LwlmYInsr~sldd 1098 (1669)
....+.+.+-.|..+|.++|..+|.+..+-..+..+|...|-...+.+.|. |-|+++-=.|.+..-+.... .+..
T Consensus 191 ~~~~~~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~~~~r~~~~~-~~~~ 269 (365)
T PF09797_consen 191 SKTKDSEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHLILDRLSTLG-PFKS 269 (365)
T ss_pred hccCCHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHHHHHHHhccC-cccc
Confidence 444567889999999999999999999999999999999998888877775 34455433332211111111 1222
Q ss_pred ch-hhHHHHHHHHHHhh
Q 000323 1099 RL-DAYDAALSVLCRCA 1114 (1669)
Q Consensus 1099 rl-~~YdkAI~aLe~la 1114 (1669)
.. ..++.++.+|....
T Consensus 270 ~~~~~~~~~~~fy~~~~ 286 (365)
T PF09797_consen 270 APENLLENALKFYDNSE 286 (365)
T ss_pred cchHHHHHHHHHHHHHH
Confidence 22 45666777664443
No 308
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=33.42 E-value=1.2e+02 Score=36.52 Aligned_cols=52 Identities=15% Similarity=0.196 Sum_probs=45.8
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 000323 1027 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKH 1078 (1669)
Q Consensus 1027 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVel 1078 (1669)
.-++++++...+.+-++.+|-+..+|+.+...|++.+....+...|+..-++
T Consensus 165 ~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 165 ACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred hcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3466899999999999999999999999999999999988888888877553
No 309
>PF13041 PPR_2: PPR repeat family
Probab=32.51 E-value=1.1e+02 Score=26.51 Aligned_cols=33 Identities=12% Similarity=0.315 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCc
Q 000323 1130 DLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDR 1165 (1669)
Q Consensus 1130 DILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE 1165 (1669)
-.+-.+++.|++.|++++|++.++.+. ..|..|
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~---~~g~~P 36 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMK---KRGIKP 36 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHH---HcCCCC
Confidence 467789999999999999999999988 456665
No 310
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=31.13 E-value=1.4e+02 Score=34.55 Aligned_cols=62 Identities=21% Similarity=0.281 Sum_probs=48.7
Q ss_pred HHHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhh
Q 000323 1084 ALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRL 1155 (1669)
Q Consensus 1084 ~LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rL 1155 (1669)
.++..|...+ .|++|+.+|+.+...+-.+. =..=+.+++..+.+++...|+.+..+.+.=.|
T Consensus 183 ~~A~ey~~~g--------~~~~A~~~l~~~~~~yr~eg--W~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLG--------DYDKALKLLEPAASSYRREG--WWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCC--------CHHHHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4888999999 99999999998876552221 23345899999999999999999999866333
No 311
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=30.69 E-value=99 Score=41.34 Aligned_cols=81 Identities=11% Similarity=0.047 Sum_probs=52.8
Q ss_pred ccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhh-------hcCHHHHHHHHHHHHhhccCCc
Q 000323 1367 SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLL-------QNDWNEARLAIDAALKAAASEH 1439 (1669)
Q Consensus 1367 ~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~L-------qg~~~EAfaAYDKALkanp~N~ 1439 (1669)
+-..||+++-.. .+.+....+|+| -+.|-+|--++ .+..+-|+.||-+|+..-|.+
T Consensus 258 DRakAL~~~l~l-----ve~eg~vapDm~-----------Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~- 320 (1226)
T KOG4279|consen 258 DRAKALNTVLPL-----VEKEGPVAPDMY-----------CLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE- 320 (1226)
T ss_pred cHHHHHHHHHHH-----HHhcCCCCCcee-----------eeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh-
Confidence 344555554322 223445567888 45666654432 245677899999999999976
Q ss_pred HHHHHHHHHHHHhcCCCCCCcccchhh
Q 000323 1440 FKHCVREHAMLLLINESEPKEGAPISW 1466 (1669)
Q Consensus 1440 ~i~cLNNYAYFLS~e~~dL~KAeqMS~ 1466 (1669)
+.=-|||..|...|.....-++|..
T Consensus 321 --~sGIN~atLL~aaG~~Fens~Elq~ 345 (1226)
T KOG4279|consen 321 --YSGINLATLLRAAGEHFENSLELQQ 345 (1226)
T ss_pred --hccccHHHHHHHhhhhccchHHHHH
Confidence 3335899999998887776666544
No 312
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=30.45 E-value=8.9e+02 Score=28.55 Aligned_cols=131 Identities=12% Similarity=-0.078 Sum_probs=89.5
Q ss_pred CchHHHHHHHHHhhCCCCHH---HHHHHHhcCCCcccchhhHHHHHHHHHHhhhc-CCCCcchhhhhhHHHHHHHHHHHH
Q 000323 1065 SVGKDDMFSYSVKHNEGSYA---LWLMYINSRTPLNHRLDAYDAALSVLCRCASA-SDGDEMHASACILDLFLQMLQCFC 1140 (1669)
Q Consensus 1065 ~eea~emlekAVelnP~NY~---LwlmYInsr~slddrl~~YdkAI~aLe~las~-~~~Dr~~~Sa~iLDILL~LvqLY~ 1140 (1669)
++-...-..++++-+|-+-. |+.-....+ .|.+|...|++..+. +-.| --++|-+.+-..
T Consensus 72 P~R~~Rea~~~~~~ApTvqnr~rLa~al~elG--------r~~EA~~hy~qalsG~fA~d--------~a~lLglA~Aqf 135 (251)
T COG4700 72 PERHLREATEELAIAPTVQNRYRLANALAELG--------RYHEAVPHYQQALSGIFAHD--------AAMLLGLAQAQF 135 (251)
T ss_pred hhHHHHHHHHHHhhchhHHHHHHHHHHHHHhh--------hhhhhHHHHHHHhccccCCC--------HHHHHHHHHHHH
Confidence 33333444455666665443 777778888 899999999887664 4345 578999999999
Q ss_pred HhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchh-----hHHHHH-HHHhhccchHHHhhhhhhhhh
Q 000323 1141 MSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIF-----WVCCVY-LVIYRKLPDAVLQLLECEKEL 1212 (1669)
Q Consensus 1141 qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~A-----WL~~iY-llrYrvLPGd~y~q~e~~KEA 1212 (1669)
..++...|..+|+.|......+-+| +-.|-=-+.|-+.+.-.-| |...-| ...=+...+.|+...|+..|+
T Consensus 136 a~~~~A~a~~tLe~l~e~~pa~r~p-d~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 136 AIQEFAAAQQTLEDLMEYNPAFRSP-DGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREA 212 (251)
T ss_pred hhccHHHHHHHHHHHhhcCCccCCC-CchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHH
Confidence 9999999999999999866666666 5555555666666555433 777776 333344455556555554444
No 313
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=30.18 E-value=8e+02 Score=28.62 Aligned_cols=177 Identities=13% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHHHHHhhccchHHHhhhhhh
Q 000323 1130 DLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECE 1209 (1669)
Q Consensus 1130 DILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iYllrYrvLPGd~y~q~e~~ 1209 (1669)
|-+++|+++.-++|+|+.|+..+..+-. .++. |+..+|.++-++++..+.=+.
T Consensus 2 e~li~~Aklaeq~eRy~dmv~~mk~~~~-----~~~e----------Lt~eERnLlsvayKn~i~~~R------------ 54 (236)
T PF00244_consen 2 EELIYLAKLAEQAERYDDMVEYMKQLIE-----MNPE----------LTEEERNLLSVAYKNVIGSRR------------ 54 (236)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHH-----TSS-------------HHHHHHHHHHHHHHHHHHH------------
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHc-----cCCC----------CCHHHHHHHHHHHHhccccch------------
Q ss_pred hhhhccCCCCcccchhhHHHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 000323 1210 KELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKL 1289 (1669)
Q Consensus 1210 KEAf~I~W~y~~vlk~EPdnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKLN~IR~lI~LEDse~A~~LfdklLk~ 1289 (1669)
.....+.+.- ...+.............++...-.-+... ...+++|.+..|-.
T Consensus 55 ------------------~s~R~l~~~e-------~~~~~~~~~~~~~~i~~yk~kie~EL~~~--C~eii~lId~~Lip 107 (236)
T PF00244_consen 55 ------------------ASWRILSSIE-------QKEENKGNEKQVKLIKDYKKKIEDELIDI--CNEIIRLIDKSLIP 107 (236)
T ss_dssp ------------------HHHHHHHHHH-------HHHHTTTTHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHTCHH
T ss_pred ------------------HHHHhhhhHh-------hhhcccchhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhc
Q ss_pred CCCchhHHHHHHHH---------------hhcccCCccHHHHHHHHH-----hCCCCCchHHHHHHHHHHHHHHcCChHH
Q 000323 1290 YPSCLELVLMKARL---------------QKHDFGDLSSVGFEEALI-----KWPKGVPGIQCIWNQYVEYALQNGRHDF 1349 (1669)
Q Consensus 1290 ~P~d~eL~L~AAyL---------------~~K~m~~~A~svle~AL~-----~~PkNa~g~~caW~QLIq~al~~en~d~ 1349 (1669)
...+.+-.++.-.| ..+.+.+.|...|+.|+. +.|.++-..--+=|.-+=+.=-.++.+.
T Consensus 108 ~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~ 187 (236)
T PF00244_consen 108 SATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEK 187 (236)
T ss_dssp HS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHH
T ss_pred cccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHH
Q ss_pred HHHHHHHHHHh
Q 000323 1350 AAELMDRWFHS 1360 (1669)
Q Consensus 1350 Ai~Lc~~ff~g 1360 (1669)
|++|+++.|..
T Consensus 188 A~~ia~~afd~ 198 (236)
T PF00244_consen 188 AIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
No 314
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=29.52 E-value=1.1e+02 Score=38.65 Aligned_cols=111 Identities=18% Similarity=0.238 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhcccc------cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCH
Q 000323 1010 NEQCVEMALLILNQDA------NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY 1083 (1669)
Q Consensus 1010 ~qlWLelAl~~Lnq~~------n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY 1083 (1669)
.+..-++|+....... -+.|+++.|+.+. - .-++++.|-.|+......++-+.|.++|+++ .++
T Consensus 307 ~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a---~--~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~-----~d~ 376 (443)
T PF04053_consen 307 KKGYPELALQFVTDPDHRFELALQLGNLDIALEIA---K--ELDDPEKWKQLGDEALRQGNIELAEECYQKA-----KDF 376 (443)
T ss_dssp HTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHC---C--CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHC-----T-H
T ss_pred HCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHH---H--hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhh-----cCc
Confidence 3555666666665543 1345555554332 2 2348899999999999999766666666665 566
Q ss_pred H-HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHH
Q 000323 1084 A-LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQR 1151 (1669)
Q Consensus 1084 ~-LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~t 1151 (1669)
. |-++|.-.+ .- +.+.-+.+.+... ++ +...++.+...|++++-++.
T Consensus 377 ~~L~lLy~~~g--------~~-~~L~kl~~~a~~~-~~-----------~n~af~~~~~lgd~~~cv~l 424 (443)
T PF04053_consen 377 SGLLLLYSSTG--------DR-EKLSKLAKIAEER-GD-----------INIAFQAALLLGDVEECVDL 424 (443)
T ss_dssp HHHHHHHHHCT---------H-HHHHHHHHHHHHT-T------------HHHHHHHHHHHT-HHHHHHH
T ss_pred cccHHHHHHhC--------CH-HHHHHHHHHHHHc-cC-----------HHHHHHHHHHcCCHHHHHHH
Confidence 6 878888877 22 3333343444443 33 34455666667777777773
No 315
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=29.28 E-value=3.4e+02 Score=26.84 Aligned_cols=82 Identities=21% Similarity=0.268 Sum_probs=54.9
Q ss_pred HHHHcCChHHHHHHHHHHHHhhhhcccccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHhhhc
Q 000323 1340 YALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQN 1419 (1669)
Q Consensus 1340 ~al~~en~d~Ai~Lc~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD~L~q~Lqg 1419 (1669)
.+|+.+|+..|++-+.++|.-......... .. ..-+++|+.+......|
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~----------------------~~---------~~~~all~lA~~~~~~G 55 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSS----------------------NS---------GLAYALLNLAELHRRFG 55 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchh----------------------hH---------HHHHHHHHHHHHHHHhC
Confidence 578899999999999887743211111111 00 11237888866666689
Q ss_pred CHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHh
Q 000323 1420 DWNEARLAIDAALKAAASEHFKHCVREHAMLLL 1452 (1669)
Q Consensus 1420 ~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS 1452 (1669)
..++|..+++.|+.....+.=..||+-....+.
T Consensus 56 ~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~~ 88 (94)
T PF12862_consen 56 HYEEALQALEEAIRLARENGDRRCLAYALSWLA 88 (94)
T ss_pred CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 999999999999999884333677766555443
No 316
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=28.96 E-value=81 Score=26.87 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000323 1031 MKKALSLLSRALEADPTSEILWITYLLI 1058 (1669)
Q Consensus 1031 ydAALdLLsrALEINPtSaeaWy~yl~l 1058 (1669)
+|-|.++|.|.+...|+ +..|..|+.+
T Consensus 3 ~dRAR~IyeR~v~~hp~-~k~WikyAkF 29 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPE-VKNWIKYAKF 29 (32)
T ss_pred HHHHHHHHHHHHHhCCC-chHHHHHHHh
Confidence 68899999999999976 8999999887
No 317
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=28.68 E-value=68 Score=38.06 Aligned_cols=64 Identities=16% Similarity=0.053 Sum_probs=33.4
Q ss_pred ccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH------------HHHhhhhccc-ccccchhhhcc
Q 000323 1311 LSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR------------WFHSVWKVQY-SQVEISDPLVA 1377 (1669)
Q Consensus 1311 ~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~------------ff~gia~~Q~-~~deALDaLrk 1377 (1669)
.|++.|-+||.++|..+.|++-. +..-+.-++|+.+..-|++ ||+|-+-.+. .+++++..|++
T Consensus 28 ~ai~~y~raI~~nP~~~~Y~tnr----alchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 28 DAIDCYSRAICINPTVASYYTNR----ALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hHHHHHHHHHhcCCCcchhhhhH----HHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 45555555666666555544433 3333334455555555554 5555555554 55555555555
Q ss_pred c
Q 000323 1378 D 1378 (1669)
Q Consensus 1378 g 1378 (1669)
+
T Consensus 104 a 104 (284)
T KOG4642|consen 104 A 104 (284)
T ss_pred H
Confidence 4
No 318
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=28.67 E-value=2.4e+02 Score=35.47 Aligned_cols=114 Identities=17% Similarity=0.209 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH------------HHHHH-
Q 000323 1029 EGMKKALSLLSRALEADPTSE------ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA------------LWLMY- 1089 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPtSa------eaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~------------LwlmY- 1089 (1669)
+.++.|+..|+.|+.+--+.. -+++-+..+|-+.+.-+++.-+..+|.++. .||. |.-|-
T Consensus 136 s~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv-~s~~l~d~~~kyr~~~lyhmaV 214 (518)
T KOG1941|consen 136 SVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELV-NSYGLKDWSLKYRAMSLYHMAV 214 (518)
T ss_pred HHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHH-HhcCcCchhHHHHHHHHHHHHH
Confidence 456777777777776543322 367778889988888888889999999988 6665 22222
Q ss_pred -HhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHH
Q 000323 1090 -INSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRI 1152 (1669)
Q Consensus 1090 -Insr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl 1152 (1669)
++...+|+|....|++|.++=-++ +|+--. .--++.|.+.|..-|+.+.|..++
T Consensus 215 alR~~G~LgdA~e~C~Ea~klal~~-----Gdra~~----arc~~~~aDIyR~~gd~e~af~rY 269 (518)
T KOG1941|consen 215 ALRLLGRLGDAMECCEEAMKLALQH-----GDRALQ----ARCLLCFADIYRSRGDLERAFRRY 269 (518)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHh-----CChHHH----HHHHHHHHHHHHhcccHhHHHHHH
Confidence 344567888888888888765333 453001 123456677777777766655543
No 319
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=28.46 E-value=1.3e+02 Score=30.31 Aligned_cols=58 Identities=17% Similarity=0.227 Sum_probs=40.4
Q ss_pred HHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 000323 1014 VEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSV 1076 (1669)
Q Consensus 1014 LelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAV 1076 (1669)
|+--+++.+++.+ ++|+....++|+..++.+..|..++.++-...+--.-.+|+..|+
T Consensus 10 ie~GlkLY~~~~~-----~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 10 IEKGLKLYHQNET-----QQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred HHHHHHHhccchH-----HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777665 999999999999999999988887655433222222445666554
No 320
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=28.06 E-value=6.2e+02 Score=33.18 Aligned_cols=127 Identities=14% Similarity=0.065 Sum_probs=74.4
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHH-----HHHhhCCCCHH-------HHHHHHhcC
Q 000323 1026 NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFS-----YSVKHNEGSYA-------LWLMYINSR 1093 (1669)
Q Consensus 1026 n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emle-----kAVelnP~NY~-------LwlmYInsr 1093 (1669)
...+.||.-+.+|+-.-.++-.+--+.+.++-.++....-..-...+. +|-.+.|+..- ---||-|..
T Consensus 28 f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~a 107 (696)
T KOG2471|consen 28 FNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFA 107 (696)
T ss_pred cCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhh
Confidence 345778888888877777777776666777655543332211111111 12223333222 235666766
Q ss_pred CCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Q 000323 1094 TPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLL 1156 (1669)
Q Consensus 1094 ~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLE 1156 (1669)
-.|..+- .|..|++..+.+++.. ...+..+|+ .+ -+..++||..+...++|+.-++=|+
T Consensus 108 Vi~yh~~-~~g~a~~~~~~lv~r~-e~le~~~aa-~v-~~l~~~l~~~t~q~e~al~~l~vL~ 166 (696)
T KOG2471|consen 108 VIFYHHE-ENGSAMQLSSNLVSRT-ESLESSSAA-SV-TLLSDLLAAETSQCEEALDYLNVLA 166 (696)
T ss_pred eeeeeHh-hcchHHHhhhhHHHHH-HHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544 8999999999999887 343223332 22 3345678888888888877555443
No 321
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=27.74 E-value=7.7e+02 Score=32.57 Aligned_cols=126 Identities=13% Similarity=0.122 Sum_probs=87.0
Q ss_pred HHHHHHHHHhcccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhh-CC--CCHH---H
Q 000323 1012 QCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKH-NE--GSYA---L 1085 (1669)
Q Consensus 1012 lWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVel-nP--~NY~---L 1085 (1669)
..++++.-|... .+ +.=+++..|..|++=++++.=-+|+.+|-+ .+.+.+..+|.+|+.- =| +|-. +
T Consensus 101 al~el~q~y~en-~n-----~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~ev 173 (711)
T COG1747 101 ALLELLQCYKEN-GN-----EQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEV 173 (711)
T ss_pred HHHHHHHHHHhc-Cc-----hhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHH
Confidence 444555444433 44 778899999999999999999998888765 6677788999999843 22 1222 6
Q ss_pred HHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHH-HHHHHhcCHHHHHHHHHhhcc
Q 000323 1086 WLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQML-QCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1086 wlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~Lv-qLY~qSGnydKAI~tl~rLEq 1157 (1669)
|--.+..- +| ..|.-+...-...+.+...+ .+++++=| +-|--+.|++.||..+-+|+.
T Consensus 174 WeKL~~~i---~d---D~D~fl~l~~kiqt~lg~~~-------~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 174 WEKLPELI---GD---DKDFFLRLQKKIQTKLGEGR-------GSVLMQDVYKKYSENENWTEAIRILKHILE 233 (711)
T ss_pred HHHHHHhc---cc---cHHHHHHHHHHHHHhhccch-------HHHHHHHHHHHhccccCHHHHHHHHHHHhh
Confidence 65444411 22 34666666655555543334 88888877 889999999999998888875
No 322
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=27.28 E-value=49 Score=32.80 Aligned_cols=18 Identities=50% Similarity=0.575 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 000323 453 KALKAYRKAQRALIEANA 470 (1669)
Q Consensus 453 ~alkayrkaqraliean~ 470 (1669)
+||.+||||+|-|+|+.+
T Consensus 26 ~Al~~Y~~gi~~l~eg~a 43 (79)
T cd02679 26 QALAHYRKGLRELEEGIA 43 (79)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 499999999999999875
No 323
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=25.63 E-value=92 Score=28.72 Aligned_cols=35 Identities=3% Similarity=-0.163 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH
Q 000323 1050 ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1084 (1669)
Q Consensus 1050 eaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~ 1084 (1669)
+..|.++.-+++.++-+.+..+++.+++..|+|-.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 35677777778888888888888888888888876
No 324
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=25.30 E-value=96 Score=24.83 Aligned_cols=29 Identities=0% Similarity=-0.098 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 000323 1050 ILWITYLLIFYSNTNSVGKDDMFSYSVKH 1078 (1669)
Q Consensus 1050 eaWy~yl~lY~~~~~~eea~emlekAVel 1078 (1669)
.++..++.+|...+...++..++++|++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 34555566666666666666666666543
No 325
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=24.93 E-value=2.2e+02 Score=35.99 Aligned_cols=56 Identities=18% Similarity=0.363 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCC--chHHHHHHHHHhhCCCCHHHH
Q 000323 1031 MKKALSLLSRALEADPTSEILWITYLLIFYSNTNS--VGKDDMFSYSVKHNEGSYALW 1086 (1669)
Q Consensus 1031 ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~--eea~emlekAVelnP~NY~Lw 1086 (1669)
++.-+.+..-||.+||.+=-+|++..-...+.+.+ ..-++.|++|.+.+|.||.-|
T Consensus 91 ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W 148 (421)
T KOG0529|consen 91 LDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAW 148 (421)
T ss_pred hHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccch
Confidence 35566677777777777777777777666655544 123467777777777777743
No 326
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=24.49 E-value=1.4e+02 Score=36.32 Aligned_cols=79 Identities=13% Similarity=0.191 Sum_probs=59.6
Q ss_pred ccchhhHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccC-CCCcccchHHHHHH
Q 000323 1097 NHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATG-SNDRHSLFLSDILT 1175 (1669)
Q Consensus 1097 ddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~-g~sE~~lSLsKi~~ 1175 (1669)
..|+..++++|+-.++.-..+ .+.+++--+.+.||+.++.+++.+.+.+++..|+- |..= ++.+.|+++
T Consensus 92 eeki~Elde~i~~~eedngE~---------e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~Ki-Dv~l~kiRl 161 (412)
T COG5187 92 EEKIEELDERIREKEEDNGET---------EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKI-DVFLCKIRL 161 (412)
T ss_pred HHHHHHHHHHHHHHhhcccch---------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccch-hhHHHHHHH
Confidence 356777788888776554211 34788999999999999999999999999875532 4332 678888888
Q ss_pred hhccCCcchh
Q 000323 1176 CLTISDKLIF 1185 (1669)
Q Consensus 1176 YLt~sDR~~A 1185 (1669)
-+-.+|+...
T Consensus 162 g~~y~d~~vV 171 (412)
T COG5187 162 GLIYGDRKVV 171 (412)
T ss_pred HHhhccHHHH
Confidence 8888888665
No 327
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.34 E-value=2.1e+02 Score=34.49 Aligned_cols=79 Identities=16% Similarity=0.107 Sum_probs=60.8
Q ss_pred hhhhccchHHHHHHHHHH----Hhc--ccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 000323 1002 KLKQVELSNEQCVEMALL----ILN--QDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYS 1075 (1669)
Q Consensus 1002 ~le~~~~d~qlWLelAl~----~Ln--q~~n~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekA 1075 (1669)
+|+.-|.+ +.|++++.. +|| |=....|.|-+++.--+-.|..+|++.-+||.-+..-..-=+..++.+-|.++
T Consensus 212 ~lkEkP~e-~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~v 290 (329)
T KOG0545|consen 212 QLKEKPGE-PEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKV 290 (329)
T ss_pred HhccCCCC-hHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 44444443 569999854 233 33356788888888888889999999999999988877777788899999999
Q ss_pred HhhCCC
Q 000323 1076 VKHNEG 1081 (1669)
Q Consensus 1076 VelnP~ 1081 (1669)
++++|.
T Consensus 291 L~ldps 296 (329)
T KOG0545|consen 291 LELDPS 296 (329)
T ss_pred HhcChh
Confidence 999984
No 328
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=24.02 E-value=1.7e+03 Score=28.92 Aligned_cols=193 Identities=16% Similarity=0.088 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHHhhhcCCcchhhhhhhchhhHhHH---HHHHHHH----Hh-cCHHHHHHHHHHHHHhCCCchhHHHH
Q 000323 1228 QRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAV---NHIWCMA----VL-NGLECSMNLLEKYIKLYPSCLELVLM 1299 (1669)
Q Consensus 1228 dnalAL~smA~dYY~~~~ndesla~~~~~kt~~~fKL---N~IR~lI----~L-EDse~A~~LfdklLk~~P~d~eL~L~ 1299 (1669)
+..|.-+|. -......||-+++..+..++...+.- .+|+.+. .+ +|-+.|+.-|+.++ -.|+--.|-|-
T Consensus 82 drgyqALSt--GliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl-~dPEtRllGLR 158 (531)
T COG3898 82 DRGYQALST--GLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAML-DDPETRLLGLR 158 (531)
T ss_pred hhHHHHHhh--hhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHh-cChHHHHHhHH
Confidence 444444453 24444467766666552222211111 2244442 23 39999999998655 46776777889
Q ss_pred HHHHhhccc--CCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hhhhccc---------
Q 000323 1300 KARLQKHDF--GDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFH--SVWKVQY--------- 1366 (1669)
Q Consensus 1300 AAyL~~K~m--~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~--gia~~Q~--------- 1366 (1669)
+.||+.+.. -+.|+.-=+.|-...|.=.= +|.-.++...+.|+||.|++|...--. -+...-.
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~Ap~l~W----A~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLt 234 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKAPQLPW----AARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLT 234 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhccCCch----HHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Confidence 999987764 44667777889999998887 888899999999999999999977111 1111111
Q ss_pred ---------ccccchhhhcccCCCCCCCCCCCCCcccccccccchhhHHHHHHH-HHHHhhhcCHHHHHHHHHHHHhhcc
Q 000323 1367 ---------SQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNL-SLHRLLQNDWNEARLAIDAALKAAA 1436 (1669)
Q Consensus 1367 ---------~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD-~L~q~Lqg~~~EAfaAYDKALkanp 1436 (1669)
+...|.|.-...+ +.++.++.- +.+.- .|+. +|+.-++-...|.+-+..|
T Consensus 235 AkA~s~ldadp~~Ar~~A~~a~-----KL~pdlvPa-------------av~AAralf~--d~~~rKg~~ilE~aWK~eP 294 (531)
T COG3898 235 AKAMSLLDADPASARDDALEAN-----KLAPDLVPA-------------AVVAARALFR--DGNLRKGSKILETAWKAEP 294 (531)
T ss_pred HHHHHHhcCChHHHHHHHHHHh-----hcCCccchH-------------HHHHHHHHHh--ccchhhhhhHHHHHHhcCC
Confidence 2222222222111 112223322 33333 8888 9999999999999999999
Q ss_pred CCcHHHHHHHHHHH
Q 000323 1437 SEHFKHCVREHAML 1450 (1669)
Q Consensus 1437 ~N~~i~cLNNYAYF 1450 (1669)
-- .++.-|.+-
T Consensus 295 HP---~ia~lY~~a 305 (531)
T COG3898 295 HP---DIALLYVRA 305 (531)
T ss_pred Ch---HHHHHHHHh
Confidence 54 345555443
No 329
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=23.90 E-value=1.1e+02 Score=23.71 Aligned_cols=28 Identities=14% Similarity=0.311 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1130 DLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1130 DILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
..+-.+++.+...|+++.|++.++.+..
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3567899999999999999998888874
No 330
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=23.85 E-value=1.2e+02 Score=25.87 Aligned_cols=29 Identities=10% Similarity=0.370 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHhh
Q 000323 1276 LECSMNLLEKYIKLYPSCLELVLMKARLQK 1305 (1669)
Q Consensus 1276 se~A~~LfdklLk~~P~d~eL~L~AAyL~~ 1305 (1669)
.+.|+.+|.+++..+|. +..||..|.++.
T Consensus 3 ~dRAR~IyeR~v~~hp~-~k~WikyAkFEe 31 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPE-VKNWIKYAKFEE 31 (32)
T ss_pred HHHHHHHHHHHHHhCCC-chHHHHHHHhhc
Confidence 46778888888887754 666777776553
No 331
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=23.73 E-value=3.2e+02 Score=28.17 Aligned_cols=111 Identities=14% Similarity=0.140 Sum_probs=60.5
Q ss_pred HhCCCCchHHHHHHHHHhhCCCCHH----HHHHHHhcCCCcccchhhHHHHHHHHHHhhhcCCCCcchhhhhhH-HHHHH
Q 000323 1060 YSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACIL-DLFLQ 1134 (1669)
Q Consensus 1060 ~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~YdkAI~aLe~las~~~~Dr~~~Sa~iL-DILL~ 1134 (1669)
...+....+..++++.+..++.+-. |..+|++.. =.+.++.|......++.++ -...|.. +.+-.
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~---------~~~ll~~l~~~~~~yd~~~-~~~~c~~~~l~~~ 87 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD---------PQKEIERLDNKSNHYDIEK-VGKLCEKAKLYEE 87 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC---------HHHHHHHHHhccccCCHHH-HHHHHHHcCcHHH
Confidence 3344455666777777776544333 666776643 1455566643223332221 1112221 35668
Q ss_pred HHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhHHHHH
Q 000323 1135 MLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY 1191 (1669)
Q Consensus 1135 LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL~~iY 1191 (1669)
.+.||...|+++.|++.+ |.. . ++ ......|.....+...|+....
T Consensus 88 ~~~l~~k~~~~~~Al~~~--l~~--~-~d------~~~a~~~~~~~~~~~lw~~~~~ 133 (140)
T smart00299 88 AVELYKKDGNFKDAIVTL--IEH--L-GN------YEKAIEYFVKQNNPELWAEVLK 133 (140)
T ss_pred HHHHHHhhcCHHHHHHHH--HHc--c-cC------HHHHHHHHHhCCCHHHHHHHHH
Confidence 899999999999999965 221 1 11 2344555555334346766554
No 332
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=23.58 E-value=92 Score=36.93 Aligned_cols=58 Identities=12% Similarity=0.066 Sum_probs=51.8
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH
Q 000323 1027 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1084 (1669)
Q Consensus 1027 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~ 1084 (1669)
++++.++|..+|.+||+.-|.-..-|+.+..+--+.+.-..+-..|++-.+++|+...
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 4577899999999999999999999999998877777777788999999999998877
No 333
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=23.27 E-value=6.1e+02 Score=28.21 Aligned_cols=34 Identities=3% Similarity=-0.207 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH
Q 000323 1051 LWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 1084 (1669)
Q Consensus 1051 aWy~yl~lY~~~~~~eea~emlekAVelnP~NY~ 1084 (1669)
+|..++.+|.+.|..+.+.++|.++-+++-..-.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~ 71 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGH 71 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHH
Confidence 4557777777777777777777777777755444
No 334
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.04 E-value=2.2e+03 Score=29.93 Aligned_cols=46 Identities=7% Similarity=0.100 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHcCC--hHHHHHHHHH--HHHhhhhcccccccchhhh
Q 000323 1330 IQCIWNQYVEYALQNGR--HDFAAELMDR--WFHSVWKVQYSQVEISDPL 1375 (1669)
Q Consensus 1330 ~~caW~QLIq~al~~en--~d~Ai~Lc~~--ff~gia~~Q~~~deALDaL 1375 (1669)
.+.-+..|+-.....++ .+.|++||.+ ||...-|.--+.-++-+||
T Consensus 618 AEyDrk~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrmGn~k~AL 667 (846)
T KOG2066|consen 618 AEYDRKKLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRMGNAKEAL 667 (846)
T ss_pred HHHhHhhhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhhcchHHHH
Confidence 33445555666666555 5789999988 6666555544333444444
No 335
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.03 E-value=1.6e+03 Score=28.23 Aligned_cols=110 Identities=16% Similarity=0.109 Sum_probs=68.2
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHH----hhCCCCHHHHHHHHhcCCCcccchhh
Q 000323 1027 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSV----KHNEGSYALWLMYINSRTPLNHRLDA 1102 (1669)
Q Consensus 1027 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAV----elnP~NY~LwlmYInsr~slddrl~~ 1102 (1669)
+.|+|++|+.-|+-||+.--=.+-+-|.++...+++++...++++....| +--|. | +-+-..++
T Consensus 156 kegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPE---l-----gIGm~teg---- 223 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPE---L-----GIGMTTEG---- 223 (459)
T ss_pred ccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCc---c-----Cccceecc----
Confidence 44789999999999999999999999999988888888777776665554 33331 0 11100111
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcc
Q 000323 1103 YDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 1157 (1669)
Q Consensus 1103 YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq 1157 (1669)
+.+ ..-.+ +-..+.|+- .+.|..-+-.|-+.||++.|-..|-.+-+
T Consensus 224 ----iDv---rsvgN-t~~lh~Sal-~eAfNLKaAIeyq~~n~eAA~eaLtDmPP 269 (459)
T KOG4340|consen 224 ----IDV---RSVGN-TLVLHQSAL-VEAFNLKAAIEYQLRNYEAAQEALTDMPP 269 (459)
T ss_pred ----Cch---hcccc-hHHHHHHHH-HHHhhhhhhhhhhcccHHHHHHHhhcCCC
Confidence 110 01112 223444543 44445556677788888887777666554
No 336
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.02 E-value=3.8e+02 Score=35.73 Aligned_cols=93 Identities=22% Similarity=0.302 Sum_probs=66.2
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHH-HHHHHHhcCCCcccchhhHHH
Q 000323 1027 KLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-LWLMYINSRTPLNHRLDAYDA 1105 (1669)
Q Consensus 1027 ~~g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~-LwlmYInsr~slddrl~~Ydk 1105 (1669)
+.|+++.|+++.. .-+++.=|-.|+.+....++-..+.++|.+| .++. |-++|--++. ..
T Consensus 649 ~lgrl~iA~~la~-----e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a-----~d~~~LlLl~t~~g~---------~~ 709 (794)
T KOG0276|consen 649 KLGRLDIAFDLAV-----EANSEVKWRQLGDAALSAGELPLASECFLRA-----RDLGSLLLLYTSSGN---------AE 709 (794)
T ss_pred hcCcHHHHHHHHH-----hhcchHHHHHHHHHHhhcccchhHHHHHHhh-----cchhhhhhhhhhcCC---------hh
Confidence 4677888876543 3478999999999999999988899999999 5565 7777776661 23
Q ss_pred HHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHH
Q 000323 1106 ALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQ 1150 (1669)
Q Consensus 1106 AI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~ 1150 (1669)
.+..|...+++....+ ..+-.|.++|+++..++
T Consensus 710 ~l~~la~~~~~~g~~N------------~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 710 GLAVLASLAKKQGKNN------------LAFLAYFLSGDYEECLE 742 (794)
T ss_pred HHHHHHHHHHhhcccc------------hHHHHHHHcCCHHHHHH
Confidence 3555555555542222 23346788999998888
No 337
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.40 E-value=1.5e+02 Score=35.55 Aligned_cols=83 Identities=10% Similarity=0.085 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHH--HHHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Q 000323 1264 VNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLM--KARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYA 1341 (1669)
Q Consensus 1264 LN~IR~lI~LEDse~A~~LfdklLk~~P~d~eL~L~--AAyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~a 1341 (1669)
+|+-+|+..-|+.=++++-|..+|..+|.++.-... -|+...=+ +.+|..-|..+|+++|-=+. .+..=+.+|+.-
T Consensus 234 lNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn-~~eA~~D~~~vL~ldpslas-vVsrElr~le~r 311 (329)
T KOG0545|consen 234 LNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWN-EAEAKADLQKVLELDPSLAS-VVSRELRLLENR 311 (329)
T ss_pred HhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcC-HHHHHHHHHHHHhcChhhHH-HHHHHHHHHHHH
Confidence 377888877889999999999999999999987332 23333332 77899999999999998776 222333445555
Q ss_pred HHcCChH
Q 000323 1342 LQNGRHD 1348 (1669)
Q Consensus 1342 l~~en~d 1348 (1669)
+++++-+
T Consensus 312 ~~ek~~e 318 (329)
T KOG0545|consen 312 MAEKQEE 318 (329)
T ss_pred HHHhhhH
Confidence 5444433
No 338
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=22.27 E-value=7.7e+02 Score=29.58 Aligned_cols=182 Identities=12% Similarity=0.063 Sum_probs=111.3
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHhhCCCCHHHHHHHHhcCCCcccchhhHHHHHH
Q 000323 1029 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALS 1108 (1669)
Q Consensus 1029 g~ydAALdLLsrALEINPtSaeaWy~yl~lY~~~~~~eea~emlekAVelnP~NY~LwlmYInsr~slddrl~~YdkAI~ 1108 (1669)
+.++.|+.+...-++.+|+++-.-..|+++|.-.++-+.++.-|+-+.++.|....-+.+|-+.- .|+.++.
T Consensus 15 ~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~li--------r~ea~R~ 86 (273)
T COG4455 15 NSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLI--------RCEAARN 86 (273)
T ss_pred ccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHH--------HHHHHHH
Confidence 45788999999999999999999999999999999999999999999999987777888888876 7777776
Q ss_pred HHHHhhhcCCCCcchhh-hhhHHHHHHHHHHHHHhcCHHHHHHHHHhhcccccCCCCcccchHHHHHHhhccCCcchhhH
Q 000323 1109 VLCRCASASDGDEMHAS-ACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWV 1187 (1669)
Q Consensus 1109 aLe~las~~~~Dr~~~S-a~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDR~~AWL 1187 (1669)
.... .++. |+- +- -.-+++...+.-+-+..+.-..|...+... |.+...+ .+- ...-.|.+|+
T Consensus 87 evfa-g~~~-Pgf--lg~p~p~wva~L~aala~h~dg~gea~~alreq---al~aa~~-~iG--------~~~gg~fawi 150 (273)
T COG4455 87 EVFA-GGAV-PGF--LGGPSPEWVAALLAALALHSDGAGEARTALREQ---ALKAAPV-PIG--------HADGGSFAWI 150 (273)
T ss_pred HHhc-cCCC-CCC--cCCCCHHHHHHHHHHHhcccCCcchHHHHHHHH---HHhhCCC-CCc--------ccCCcchhhh
Confidence 5421 1122 221 00 111455555555666666555544433222 2221111 000 2355777888
Q ss_pred HHHH-----HH------HhhccchHHHhhhh--hhhhhhccCCCCcccchhhHHHHHHHH
Q 000323 1188 CCVY-----LV------IYRKLPDAVLQLLE--CEKELFAIDWPPVQLEDDEKQRAIKLI 1234 (1669)
Q Consensus 1188 ~~iY-----ll------rYrvLPGd~y~q~e--~~KEAf~I~W~y~~vlk~EPdnalAL~ 1234 (1669)
+..- .+ +|.=+|=.=+.... .++..=++-|...++.--|..-..+++
T Consensus 151 aDsD~RlgpvlEvitnG~Y~Wipfs~IrSL~v~~psrlrDL~w~paeltl~dg~~~~a~L 210 (273)
T COG4455 151 ADSDDRLGPVLEVITNGRYLWIPFSRIRSLSVDPPSRLRDLAWRPAELTLRDGAIASALL 210 (273)
T ss_pred hhcccccCcceEEEeCCEEEEEehhhccccccCCCCChHHhhcccceEEEecCceeEEEe
Confidence 8763 11 23333322122222 355556677777777555554444443
No 339
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=22.00 E-value=1.2e+02 Score=35.78 Aligned_cols=44 Identities=20% Similarity=0.304 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHhhhcCCCCcchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHH
Q 000323 1102 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRIS 1153 (1669)
Q Consensus 1102 ~YdkAI~aLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~ 1153 (1669)
...+||....+.++..|.| -+.--.++||||..|+|+||..-++
T Consensus 16 sL~dai~~a~~qVkakPtd--------a~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 16 SLQDAIGLARDQVKAKPTD--------AGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred cHHHHHHHHHHHHhcCCcc--------ccchhHHHHHHhhcchHHHHHHHHH
Confidence 4488999999999999555 4666788999999999999987543
No 340
>smart00356 ZnF_C3H1 zinc finger.
Probab=21.24 E-value=57 Score=24.88 Aligned_cols=22 Identities=36% Similarity=0.803 Sum_probs=17.2
Q ss_pred Ccceeeccccccc-CCCCcchhh
Q 000323 855 WPLCMYELRGKCN-NDECPWQHV 876 (1669)
Q Consensus 855 ~~lC~fel~G~CN-d~~C~wQH~ 876 (1669)
..+|++=.+|.|+ .+.|++-|.
T Consensus 4 ~~~C~~~~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 4 TELCKFFKRGYCPYGDRCKFAHP 26 (27)
T ss_pred CCcCcCccCCCCCCCCCcCCCCc
Confidence 3478866899999 567999885
No 341
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=21.13 E-value=6.1e+02 Score=35.44 Aligned_cols=249 Identities=15% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHhhcccCCccHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccc--ccccchhhhccc
Q 000323 1301 ARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQY--SQVEISDPLVAD 1378 (1669)
Q Consensus 1301 AyL~~K~m~~~A~svle~AL~~~PkNa~g~~caW~QLIq~al~~en~d~Ai~Lc~~ff~gia~~Q~--~~deALDaLrkg 1378 (1669)
|+|..|. -+.|..-|.++-.--|..++ +++..-++--..+........ ..++||+.|.+.
T Consensus 484 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (932)
T PRK13184 484 AFLAEKL-YDQALIFYRRIRESFPGRKE-----------------GYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL 545 (932)
T ss_pred HHHhhHH-HHHHHHHHHHHhhcCCCccc-----------------chHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh
Q ss_pred -CCCCCCCCCCCCCcccccccccchhhHHHHHHH--HHHHhhhcCHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhcCC
Q 000323 1379 -MSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNL--SLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINE 1455 (1669)
Q Consensus 1379 -ns~i~~es~s~~vSDfy~~~~~Q~d~~fa~LGD--~L~q~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS~e~ 1455 (1669)
+++.-+ + .|||- .|.. .|+++|-...|+-||+--|..-.+.-|++|..|=.-+-
T Consensus 546 ~~~~~~~----------~-----------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (932)
T PRK13184 546 HGGVGAP----------L-----------EYLGKALVYQR--LGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHES 602 (932)
T ss_pred cCCCCCc----------h-----------HHHhHHHHHHH--hhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q ss_pred CCCCcccchhhhHHHHHHHHhhhcccccccc--cchhhhccccchhhHHHHhhhc-----CCCCCChhhHHHHHhhc-cC
Q 000323 1456 SEPKEGAPISWQLKLLNSYLDRARSLPYLKL--LPRQFINNIERPRLQQLIDNLL-----SPVSSDFSLVNLVLEVC-YG 1527 (1669)
Q Consensus 1456 ~dL~KAeqMS~~~KtVsTYLDTAWILf~~~~--lARiYI~~i~k~rv~~liDqaL-----~~~S~dss~~nkALE~W-~g 1527 (1669)
+-+.-..+++| .|=+-|++|.... +.++|.+++.|+-= +-.. .|-..-++-.+.-|.|| .-
T Consensus 603 --~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (932)
T PRK13184 603 --LYKHRREALVF-----MLLALWIAPEKISSREEEKFLEILYHKQQ----ATLFCQLDKTPLQFRSSKMELFLSFWSGF 671 (932)
T ss_pred --HHHHHHHHHHH-----HHHHHHhCcccccchHHHHHHHHHHhhcc----CCceeeccCchhhhhhhhHHHHHHHHhcC
Q ss_pred CCCcccccccccchhHHHHHHHhhc-----CcchhhHHHHHHHhhccCCCCCCCCCchhHHHHHhhhhhhhhhccCCCCc
Q 000323 1528 PSLLPRNFSKLKDLVDFVEGIMEIV-----PSNYQLAFSVFKLLNKDHNPNITDAVPESVLFWASSSLVSAIFHAVPVAP 1602 (1669)
Q Consensus 1528 ~slLpqKI~~kKyi~dfVE~ime~~-----P~Ny~Lal~v~kll~k~~~~~~~d~~s~~~~fwA~s~l~~ai~~a~pvap 1602 (1669)
+..||.-+..--.+.|| +++-+++ =+|.+++-...-.|...++ .-..|
T Consensus 672 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~ 724 (932)
T PRK13184 672 TPFLPELFQRAWDLRDY-RALADIFYVACDLGNWEFFSQFSDILAEVSD--------------------------EITFT 724 (932)
T ss_pred chhhHHHHHHHhhcccH-HHHHHHHHHHHHhccHHHHHHHHHHHHHHhh--------------------------hccch
Q ss_pred hHH----------HHHHHHHhhhchhHHHHHHHHHH
Q 000323 1603 EYV----------WVEAAGILGNISSIEEISERFFK 1628 (1669)
Q Consensus 1603 e~v----------Wveaa~~l~~l~~~~~i~~rfy~ 1628 (1669)
+.+ |+-+.+.|..=.+.+.+.+.+.+
T Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (932)
T PRK13184 725 ESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDN 760 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhh
No 342
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=21.01 E-value=1.9e+02 Score=37.43 Aligned_cols=83 Identities=10% Similarity=0.077 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHHhCCCchhHHHHHHHHhhcccCCccHHHHHHHHHhCCCCCc---------------------hHHHH
Q 000323 1275 GLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVP---------------------GIQCI 1333 (1669)
Q Consensus 1275 Dse~A~~LfdklLk~~P~d~eL~L~AAyL~~K~m~~~A~svle~AL~~~PkNa~---------------------g~~ca 1333 (1669)
+.++.+.+..++|+.+|+|++-.++.+-=... ...++...|++|++....+-. -...+
T Consensus 183 np~aRIkaA~eALei~pdCAdAYILLAEEeA~-Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~ 261 (539)
T PF04184_consen 183 NPQARIKAAKEALEINPDCADAYILLAEEEAS-TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYA 261 (539)
T ss_pred CHHHHHHHHHHHHHhhhhhhHHHhhccccccc-CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhh
Confidence 89999999999999999999984443331111 134555556665543322111 11445
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 000323 1334 WNQYVEYALQNGRHDFAAELMDRWF 1358 (1669)
Q Consensus 1334 W~QLIq~al~~en~d~Ai~Lc~~ff 1358 (1669)
+.-|...+++.|..++|+++++.-.
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLl 286 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLL 286 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHH
Confidence 5668888888888888888887643
Done!