BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000324
         (1665 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens
            GN=SNRNP200 PE=1 SV=2
          Length = 2136

 Score = 1911 bits (4951), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 965/1674 (57%), Positives = 1246/1674 (74%), Gaps = 52/1674 (3%)

Query: 9    AEAHARFKQYEYRANSSLVLTTDSRPRDT---HEPTGEPESLWGKIDPRSFGDRAFRGRP 65
            A+  AR  QYEY+ANS+LVL  D    D     EPTGE  SL GK++    GD+A R +P
Sbjct: 2    ADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTKP 61

Query: 66   PELEEKLKKSAKKKKERDPDADAAAA----SEGT-------YQPKTKETRAAYEAMLSVI 114
             +++E+ +   +K+ E   D +        SEG        Y+PKTKETR  YE +LS I
Sbjct: 62   -QMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI 120

Query: 115  QQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLIT 174
            Q  LG QP +I+ GAADE+LAVLKN+ +++ +++KEI+ LL    +  +  LV++GK IT
Sbjct: 121  QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT 180

Query: 175  DYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEE----DEEEEEDV 230
            DY   GD    +  N  +++D+  GV V+FE ++++ +E     V+EE    D E +E V
Sbjct: 181  DY--GGD---KEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAV 235

Query: 231  AEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQKL 290
                 S  +   G +        +++   L+ +DIDA+WLQR++S+ +D  I     QK 
Sbjct: 236  VRCTLSANLVASGELM-------SSKKKDLHPRDIDAFWLQRQLSRFYDDAI---VSQKK 285

Query: 291  AEEVLKIL-AEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKK 349
            A+EVL+IL    DDRE EN+L+  L F+ F  IK L ++R+ +++CT LA AQ + E+++
Sbjct: 286  ADEVLEILKTASDDRECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKER 345

Query: 350  IEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRDRRGLV 409
            I  +M    P+L+  L QLH T           E  IREE  R +    S    D   + 
Sbjct: 346  IMGKMEA-DPELSKFLYQLHETEK---------EDLIREERSRRERVRQSRMDTDLETM- 394

Query: 410  DRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKP 469
            D D  G  L  RQ+LDL+ L F QG  FMAN++C LP+GS R   KGYEE+HVPA+K KP
Sbjct: 395  DLDQGGEALAPRQVLDLEDLVFTQGSHFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKP 454

Query: 470  LDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAV 529
                E+L+ + ++P++AQ  F+G   LNR+QS++Y++AL + +N+LLCAPTGAGKTNVA+
Sbjct: 455  FGSEEQLLPVEKLPKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVAL 514

Query: 530  LTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQT 589
            + +L+++  + N DG+ N  ++KI+Y+APM++LV E+VG+   RL  Y + V EL+GD  
Sbjct: 515  MCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQ 574

Query: 590  LTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVAR 649
            L +++I  TQIIV TPEKWDIITRK G+RTYTQLV+L+I+DEIHLLHD+RGPVLE++VAR
Sbjct: 575  LCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVAR 634

Query: 650  TVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQV 709
             +R IE T+E +RL+GLSATLPNYEDVA FLRV+  KGLFYFDNS+RPVPL Q Y+GI  
Sbjct: 635  AIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITE 694

Query: 710  KKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKE 769
            KK ++RFQ+MN++ YEK++  AGK+QVL+FVHSRKET KTARAIRD  LE DTLG FL+E
Sbjct: 695  KKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLRE 754

Query: 770  DSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTAT 829
             S S E+L++  +  K+ +LKDLLPYGFAIHHAGMTR DR LVEDLF D H+QVLVSTAT
Sbjct: 755  GSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTAT 814

Query: 830  LAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889
            LAWGVNLPAHTVIIKGTQ+Y+PEKG WTEL  LDI+QMLGRAGRPQYD+ GEGI+IT H 
Sbjct: 815  LAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHG 874

Query: 890  ELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPA 949
            EL+YYLSL+NQQLPIESQ VSKL D LNAEIVLG VQNAK+A NW+GY YLYIRMLR+P 
Sbjct: 875  ELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPT 934

Query: 950  LYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYIS 1009
            LYG++ + LK D  L +RR DLVHTAA +LD+NNLVKYD+K+G FQVT+LGRIAS+YYI+
Sbjct: 935  LYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYIT 994

Query: 1010 HGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEE 1069
            + T+ TYN+ LKPT+ +IEL R+FSLS EFK +TVR++EK+EL KLL+RVPIPVKES+EE
Sbjct: 995  NDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERVPIPVKESIEE 1054

Query: 1070 PSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNL 1129
            PSAKINVLLQA+ISQLKLEG +L +DMV++TQSAGRL+RA+FEIVL RGWAQL +K LNL
Sbjct: 1055 PSAKINVLLQAFISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNL 1114

Query: 1130 SKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTL 1189
             KM+ KRMW    PLRQF  +P E++ K+EKK+F +ER YDL+  E+GELIR PKMG+T+
Sbjct: 1115 CKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTI 1174

Query: 1190 HKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYIL 1249
            HK+VH FPKL L+ H+QPITR+ LKVELTITPDF WD+KVHG  E FW++VED D E IL
Sbjct: 1175 HKYVHLFPKLELSVHLQPITRSTLKVELTITPDFQWDEKVHGSSEAFWILVEDVDSEVIL 1234

Query: 1250 HHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEK 1309
            HHEYF+LK +Y +++H + F VP++EPLPPQYFIRVVSD+WL  +T LPVSFRHLILPEK
Sbjct: 1235 HHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEK 1294

Query: 1310 YPPPTELLDLQPLPVTALRNPLYEALYQG-FKHFNPIQTQVFTVLYNTDDNVLVAAPTGS 1368
            YPPPTELLDLQPLPV+ALRN  +E+LYQ  F  FNPIQTQVF  +YN+DDNV V APTGS
Sbjct: 1295 YPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGS 1354

Query: 1369 GKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGE 1428
            GKTIC+EFAILR   ++SE    R VYI P+EALA++ Y DW  KF   L  +VV LTGE
Sbjct: 1355 GKTICAEFAILRMLLQSSEG---RCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGE 1411

Query: 1429 TAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488
            T+ DLKLL KG IIISTPEKWD LSRRWKQRK VQ ++LF++DE+HLIGG+ GPVLEVI 
Sbjct: 1412 TSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVIC 1471

Query: 1489 SRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVD 1548
            SRMRYI+SQ+E  IRIVALS+SL+NAKD+  W+G ++   FNF P VRPVPLE+HIQG +
Sbjct: 1472 SRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFN 1531

Query: 1549 ITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAF 1608
            I++ + R+ +M KP + AI +H+  +KP +VFVPSRK  RLTA+D++T  + D  Q+  F
Sbjct: 1532 ISHTQTRLLSMAKPVYHAITKHSP-KKPVIVFVPSRKQTRLTAIDILTTCAADI-QRQRF 1589

Query: 1609 LLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKI 1662
            L    +++ P+++ + +  LK TL +GVGYLHEGL+  ++ +V  LF +G I++
Sbjct: 1590 LHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQV 1643



 Score =  338 bits (867), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 229/748 (30%), Positives = 388/748 (51%), Gaps = 35/748 (4%)

Query: 472  PNEKLIKISEMPEWA--QPAFKGMTQ-----LNRVQSRVYKSALSSADNILLCAPTGAGK 524
            P  +L+ +  +P  A    AF+ + Q      N +Q++V+ +  +S DN+ + APTG+GK
Sbjct: 1297 PPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGK 1356

Query: 525  TNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVRE 583
            T  A   IL+ L            S  + VY+ PM+AL  +V  +   + Q   + KV  
Sbjct: 1357 TICAEFAILRML---------LQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVL 1407

Query: 584  LSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVL 643
            L+G+ +   + + +  II++TPEKWDI++R+   R   Q + L ++DE+HL+    GPVL
Sbjct: 1408 LTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVL 1467

Query: 644  ESIVARTVRQIETTKEH-IRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQ 702
            E I +R +R I +  E  IR+V LS++L N +DVA +L  +     F F  + RPVPL  
Sbjct: 1468 EVICSR-MRYISSQIERPIRIVALSSSLSNAKDVAHWLGCS-ATSTFNFHPNVRPVPLEL 1525

Query: 703  QYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDT 762
               G  +     R   M    Y  +   + K  V++FV SRK+T  TA  I  T   +  
Sbjct: 1526 HIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQ 1585

Query: 763  LGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQ 822
              RFL     + + L  + + +  + LK+ L  G    H G++  +R+LVE LF  G +Q
Sbjct: 1586 RQRFLH---CTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQ 1642

Query: 823  VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 882
            V+V++ +L WG+N+ AH VII  TQ YN +  A+ +    D++QM+G A RP  D  G  
Sbjct: 1643 VVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRC 1702

Query: 883  IIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYI 942
            +I+   S+  ++   + + LP+ES     + D  NAEIV  T++N ++A +++ +T+LY 
Sbjct: 1703 VIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYR 1762

Query: 943  RMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRI 1002
            RM +NP  Y L     +    L +  ++LV    + L+++  +  + +     + +LG I
Sbjct: 1763 RMTQNPNYYNLQGISHRH---LSDHLSELVEQTLSDLEQSKCISIEDEMDVAPL-NLGMI 1818

Query: 1003 ASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIP 1062
            A+YYYI++ TI  ++  L        L  + S + E++ + +R  E   L +L  +VP  
Sbjct: 1819 AAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHK 1878

Query: 1063 VKE-SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQ 1121
            +      +P  K N+LLQA++S+++L    L SD   I   A RL++A  +++   GW  
Sbjct: 1879 LNNPKFNDPHVKTNLLLQAHLSRMQLSA-ELQSDTEEILSKAIRLIQACVDVLSSNGWLS 1937

Query: 1122 LAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIR 1181
             A  A+ L++MVT+ MWS  + L+Q     +E + +   K    E  +D+   E  E   
Sbjct: 1938 PALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDK--GVESVFDIMEMEDEERNA 1995

Query: 1182 FPKMGRT----LHKFVHQFPKLILAAHV 1205
              ++  +    + +F +++P + L+  V
Sbjct: 1996 LLQLTDSQIADVARFCNRYPNIELSYEV 2023


>sp|Q9VUV9|U520_DROME Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
            OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4
          Length = 2142

 Score = 1909 bits (4945), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 957/1671 (57%), Positives = 1236/1671 (73%), Gaps = 45/1671 (2%)

Query: 9    AEAHARFKQYEYRANSSLVLTTD----SRPRDTHEPTGEPESLWGKIDPRSFGDRAFRGR 64
            A+A AR  QYEY+ANS+LVL  D     RPR   E TGE  SL GK+D    GDR  R +
Sbjct: 2    ADAAARQLQYEYKANSNLVLQADVRLIERPR-RDEATGEVCSLVGKLDGTRMGDRYQRTK 60

Query: 65   PPELEE-KLKKSAKKKKERDPD--ADAAAASEG-------TYQPKTKETRAAYEAMLSVI 114
            P + EE K+K+  + + + D +    A   SEG        Y+PKT+ETR  YE +LS I
Sbjct: 61   PEKTEERKVKRQKRDEAQYDFERMKGATLLSEGIDEMVGIVYRPKTQETRQTYEVLLSFI 120

Query: 115  QQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLIT 174
            Q+ LG QP +I+ GAADEILAVLKND +K+ ++KK+I+ LL  + +  F  LV++GK IT
Sbjct: 121  QEALGDQPRDILCGAADEILAVLKNDRLKDRERKKDIDSLLGAVTDERFALLVNLGKKIT 180

Query: 175  DYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDEEEEEDVAEPN 234
            D+      A   A N  E +D+  G+ V+FEE+   EEESD DM  E  +++ +D  E  
Sbjct: 181  DFGSDAVNALTAAPNNEEQIDETYGINVQFEES---EEESDNDMYGEIRDDDAQDEGEEA 237

Query: 235  ASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEV 294
                      + +++ + +  +  SL+  DIDAYWLQR +S+ +    D    Q  A +V
Sbjct: 238  RIDHTLHAENLANEEAANNVKKERSLHPLDIDAYWLQRCLSKFYK---DAMVSQSKAADV 294

Query: 295  LKILAEG-DDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEE 353
            LKIL +  DDR+ EN+L+  L +D F  IK L  NR  V++CT LA AQ   ER++I E+
Sbjct: 295  LKILKDAADDRDCENQLVLLLGYDCFDFIKQLKLNRQMVLYCTMLASAQTDSERQRIREK 354

Query: 354  MMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRDRRGLVDRDA 413
            M G    LA IL QL   ++  +E           EAR       S  G+         A
Sbjct: 355  MRG-NSALAKILRQLDTGKSEDQEEG---------EAR------GSKRGKGDAEDGGAAA 398

Query: 414  DGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPN 473
             G   G RQLL+L+ +AF QG  FMAN++C LP+GS R   KGYEE+HVPA+K  P D N
Sbjct: 399  AGQVAGVRQLLELEEMAFTQGSHFMANKRCQLPDGSYRKQRKGYEEVHVPALKPVPFDAN 458

Query: 474  EKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTIL 533
            E+L  + ++P++ QP F+G   LNR+QSR+YK+AL S +N+LLCAPTGAGKTNVA+LT++
Sbjct: 459  EELQPVDKLPKYVQPVFEGFKTLNRIQSRLYKAALDSDENMLLCAPTGAGKTNVALLTMM 518

Query: 534  QQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ 593
            +++  + N+DG+ N  ++KI+YVAPMK+LV E+VGN   RL  Y++ V EL+GD  LTR+
Sbjct: 519  REIGKHINEDGTINAQDFKIIYVAPMKSLVQEMVGNFGRRLACYNLTVSELTGDHQLTRE 578

Query: 594  QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ 653
            QI  TQ+IV TPEKWDIITRK G+RT+  LV+L+IIDEIHLLHD RGPVLE++VART+R 
Sbjct: 579  QIAATQVIVCTPEKWDIITRKGGERTFVSLVRLVIIDEIHLLHDERGPVLEALVARTIRN 638

Query: 654  IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713
            IETT+E +RLVGLSATLPNY+DVA FLRV  +KGLFYFDNSYRPV L QQYIG+  KK L
Sbjct: 639  IETTQEEVRLVGLSATLPNYQDVATFLRVKPDKGLFYFDNSYRPVSLEQQYIGVTEKKAL 698

Query: 714  QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVS 773
            +RFQ+MN++ YEK +  AG++QVL+FVHSRKET KTARA+RD  LE DTLG FLKE S S
Sbjct: 699  KRFQVMNEIVYEKTMEHAGRNQVLVFVHSRKETGKTARAVRDMCLEQDTLGSFLKEGSAS 758

Query: 774  REILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWG 833
             E+L++  + VK+ +LK+LLPYGFAIHHAGMTR DR LVEDLF D H+QVLVSTATLAWG
Sbjct: 759  MEVLRTEAEQVKNTELKELLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWG 818

Query: 834  VNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRY 893
            VNLPAHTVIIKGTQ+YNPEKG W ELS LD++QMLGRAGRPQYD+ GEGI+IT HSEL++
Sbjct: 819  VNLPAHTVIIKGTQVYNPEKGRWVELSALDVLQMLGRAGRPQYDTKGEGILITNHSELQF 878

Query: 894  YLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGL 953
            YLSL+NQQLPIESQF+SKL D LNAEIVLGTVQ+ ++A NW+GYTYLYIRMLRNP LYG+
Sbjct: 879  YLSLLNQQLPIESQFISKLPDMLNAEIVLGTVQHLQDAVNWLGYTYLYIRMLRNPTLYGV 938

Query: 954  APEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTI 1013
            + + +K D  L + RADL+HTAA  L+R+ L+KYDRK+G+FQVTDLGRIAS+YY++H T+
Sbjct: 939  SHDAIKADPLLEQHRADLLHTAACCLERSGLIKYDRKTGHFQVTDLGRIASHYYLTHETM 998

Query: 1014 STYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAK 1073
             TYN+ LK T+ +IEL R+FSLS EF++++VR++EK+EL KL++RVPIP+KES+EE SAK
Sbjct: 999  LTYNQLLKQTLSEIELFRVFSLSSEFRHISVREEEKLELQKLMERVPIPIKESIEEHSAK 1058

Query: 1074 INVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMV 1133
            +NVLLQAYISQLKLEG +L SDMVFITQSA RL+RA+FEIVL RGWAQLA+K L L KM+
Sbjct: 1059 VNVLLQAYISQLKLEGFALMSDMVFITQSAARLMRAIFEIVLTRGWAQLADKTLTLCKMI 1118

Query: 1134 TKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFV 1193
             +RMW   TPLRQF  +P+EI  KLEKK F W R YDL P ELGELIR PK+G+T+HKFV
Sbjct: 1119 DRRMWQSMTPLRQFKKMPDEIAKKLEKKHFPWGRLYDLEPHELGELIRVPKLGKTIHKFV 1178

Query: 1194 HQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEY 1253
            HQFPKL L+ H+QPITR  L+VELTITPDF WD+KVHG  E FWV++ED D E ILHHE+
Sbjct: 1179 HQFPKLELSTHIQPITRGTLRVELTITPDFQWDEKVHGQSEGFWVLIEDVDSELILHHEF 1238

Query: 1254 FMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPP 1313
            F+LK++Y +++H L F VP++EPLPPQYF+R+VSD+W+G++T LPVSFRHLILPEK  PP
Sbjct: 1239 FLLKQKYSQDEHQLKFFVPVFEPLPPQYFLRIVSDRWIGAETQLPVSFRHLILPEKNMPP 1298

Query: 1314 TELLDLQPLPVTALRNPLYEALY-QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTI 1372
            TELLDLQPLP++ALR P +E+ Y Q F  FNPIQTQVF  +YN+D+NV V APTGSGK  
Sbjct: 1299 TELLDLQPLPISALRQPKFESFYSQRFPQFNPIQTQVFNAVYNSDENVFVGAPTGSGKMT 1358

Query: 1373 CSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD 1432
             +EFAI+R     S+    R VY+   EALA   + DW  KFG  L ++VV+LTGET  D
Sbjct: 1359 IAEFAIMRLFTTQSDA---RCVYLVSEEALADLVFADWHSKFG-SLDIKVVKLTGETGTD 1414

Query: 1433 LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMR 1492
            LKL+ KGQ++I+T +KWD LSRRWKQRK VQ V+LFI+DEL L+GG+ GPVLE++ SRMR
Sbjct: 1415 LKLIAKGQLVITTADKWDVLSRRWKQRKNVQLVNLFIVDELQLVGGEEGPVLEIVCSRMR 1474

Query: 1493 YIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNF 1552
            YI+SQ+E +IRIVALS SL +A+D+ +W+G   +  FNF P VRP+PLE+HIQG ++T+ 
Sbjct: 1475 YISSQIEKQIRIVALSASLTDARDVAQWLGCNPNATFNFHPSVRPIPLELHIQGYNVTHN 1534

Query: 1553 EARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWP 1612
              R+  M+KP + AI++++ + KP +VFV SRK  RLTA+D++TY++ D  Q + F    
Sbjct: 1535 ATRIATMSKPVYNAILKYSAH-KPVIVFVSSRKQARLTAIDVLTYAASDL-QPNRFFHAE 1592

Query: 1613 AEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKIC 1663
             E+++PF++ + ++ LK TL  GV YLHEGL+ +D  +V  LF++G +++ 
Sbjct: 1593 EEDIKPFLERMTDKTLKETLAQGVAYLHEGLSASDHRLVEQLFDSGAVQVA 1643



 Score =  347 bits (891), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 244/850 (28%), Positives = 417/850 (49%), Gaps = 54/850 (6%)

Query: 472  PNEKLIKISEMPEWA--QPAFKGM-----TQLNRVQSRVYKSALSSADNILLCAPTGAGK 524
            P  +L+ +  +P  A  QP F+        Q N +Q++V+ +  +S +N+ + APTG+GK
Sbjct: 1297 PPTELLDLQPLPISALRQPKFESFYSQRFPQFNPIQTQVFNAVYNSDENVFVGAPTGSGK 1356

Query: 525  TNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVREL 584
              +A   I++              S+ + VY+   +AL   V  +  ++    D+KV +L
Sbjct: 1357 MTIAEFAIMRLFT---------TQSDARCVYLVSEEALADLVFADWHSKFGSLDIKVVKL 1407

Query: 585  SGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLE 644
            +G+     + I + Q+++TT +KWD+++R+   R   QLV L I+DE+ L+    GPVLE
Sbjct: 1408 TGETGTDLKLIAKGQLVITTADKWDVLSRRWKQRKNVQLVNLFIVDELQLVGGEEGPVLE 1467

Query: 645  SIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQY 704
             + +R        ++ IR+V LSA+L +  DVA +L  N     F F  S RP+PL    
Sbjct: 1468 IVCSRMRYISSQIEKQIRIVALSASLTDARDVAQWLGCN-PNATFNFHPSVRPIPLELHI 1526

Query: 705  IGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLG 764
             G  V     R   M+   Y  ++  +    V++FV SRK+   TA  +   A  +    
Sbjct: 1527 QGYNVTHNATRIATMSKPVYNAILKYSAHKPVIVFVSSRKQARLTAIDVLTYAASDLQPN 1586

Query: 765  RFLK-EDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQV 823
            RF   E+   +  L+  TD      LK+ L  G A  H G++  D +LVE LF  G VQV
Sbjct: 1587 RFFHAEEEDIKPFLERMTD----KTLKETLAQGVAYLHEGLSASDHRLVEQLFDSGAVQV 1642

Query: 824  LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883
             V +  L WG+++ AH VII  TQ YN +  ++ +    D++QM+GRA RP  D+  + +
Sbjct: 1643 AVISRDLCWGMSISAHLVIIMDTQFYNGKNHSYEDYPITDVLQMIGRANRPNEDADAKCV 1702

Query: 884  IITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIR 943
            ++   S+  ++   +N+ LPIES    ++ D  NAE+V  T++N ++A +++ +T+LY R
Sbjct: 1703 LMCQSSKKDFFKKFINEPLPIESHLDHRMHDHFNAEVVTKTIENKQDAVDYLTWTFLYRR 1762

Query: 944  MLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIA 1003
            + +NP  Y L     +    L +  ++LV    + L+++  +  +       + +LG IA
Sbjct: 1763 LTQNPNYYNLQGVTHRH---LSDHLSELVENTLSDLEQSKCISVEDDMDTLPL-NLGMIA 1818

Query: 1004 SYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPV 1063
            +YYYI++ TI  ++  L        L  + S + E++ V VR  E+  L  L  R+P  +
Sbjct: 1819 AYYYINYTTIELFSLSLNSKTKVRGLLEIISSAAEYEDVVVRHHEEQVLRTLSQRLPNKL 1878

Query: 1064 K------ESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKR 1117
                       +P  K N+LLQA++S+L+L G  L  D   I   A RL++A  +++   
Sbjct: 1879 TGPNETAPKFNDPHIKTNLLLQAHLSRLQL-GPELQGDTEQILSKAIRLIQACVDVLSSN 1937

Query: 1118 GWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELG 1177
            GW   A  A+ L++MVT+ MWS  + L+Q      EI+ +  +K    E  +D+   E  
Sbjct: 1938 GWLSPAVAAMELAQMVTQAMWSKDSYLKQLPHFSPEIVKRCTEKKI--ETVFDIMELEDE 1995

Query: 1178 ELIRFPKMG----RTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYV 1233
            +  R  ++       + +F +++P + L   V    R      + +      +D+V G V
Sbjct: 1996 DRTRLLQLSDLQMADVARFCNRYPNIELNYEVVDKDRINSGSTVNVVVQLEREDEVTGPV 2055

Query: 1234 ----------EPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFI 1283
                      E +WV++ D     +L  +   L+++       L+F  P   P    Y +
Sbjct: 2056 IAPFFPQKREEGWWVVIGDPKTNSLLSIKRLTLQQK---AKVKLDFVAP--SPGKHDYTL 2110

Query: 1284 RVVSDKWLGS 1293
              +SD +LG 
Sbjct: 2111 YYMSDSYLGC 2120


>sp|Q9U2G0|U520_CAEEL Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
            OS=Caenorhabditis elegans GN=Y46G5A.4 PE=3 SV=1
          Length = 2145

 Score = 1729 bits (4478), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 863/1675 (51%), Positives = 1174/1675 (70%), Gaps = 53/1675 (3%)

Query: 9    AEAHARFKQYEYRANSSLVLTTD---SRPRDTHEPTGEPESLWGK-IDPRSFGDRAFRGR 64
            A+  AR +QYEYR NS+LVL+ D   +  R   EPTGE   +  K +     GDRA +G+
Sbjct: 2    ADELARIQQYEYRQNSNLVLSVDYNLTDRRGREEPTGEVLPITDKEMRKMKMGDRAIKGK 61

Query: 65   PP-----ELEEKLKKSAKKKKERDPDADAAAASEGTYQPKTKETRAAYEAMLSVIQQQLG 119
             P     +  +K      ++  R+   D      G Y+P+T+ET+  YE +LS I   LG
Sbjct: 62   APVQDQKKKRKKKDDEKAQQFGRNVLVDNNELM-GAYKPRTQETKQTYEVILSFILDALG 120

Query: 120  GQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLITDYQDA 179
              P  ++ GAADE+L  LKND  ++ +KKKE+E LL P+ +     L+++ K I+D+   
Sbjct: 121  DVPREVLCGAADEVLLTLKNDKFRDKEKKKEVEALLGPLTDDRIAVLINLSKKISDFS-- 178

Query: 180  GDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDEEEEEDV-----AEPN 234
                  +   G  D+ ++ GV V+F   D DEEE D  MV E   + EE+       + +
Sbjct: 179  --IEEENKPEGDGDIYENEGVNVQF---DSDEEEDDGGMVNEIKGDSEEESEEEEGVDTD 233

Query: 235  ASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEV 294
             +  ++  G + +D++      G+ L+ +DIDA+W+QR +++ F    DP   Q+   EV
Sbjct: 234  YTATLKGDGHLTEDEQKA---RGI-LHPRDIDAHWIQRSLAKYFK---DPLIAQQKQTEV 286

Query: 295  LKILAEG-DDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEE 353
            + IL    DDR+ EN+L+  L FD+F  IK L +NRL +++CT L R  +++ER +IE++
Sbjct: 287  IGILKNAADDRDAENQLVLLLGFDQFEFIKCLRQNRLMILYCT-LLRQANEKERLQIEDD 345

Query: 354  MMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRDRRGLVDRDA 413
            M    P+L  IL  L  T   +  +   +EKS R+  +  K  +A++         +  +
Sbjct: 346  MRS-RPELHPILALLQETDEGSVVQ---VEKSKRDAEKSKKAATAAN---------EAIS 392

Query: 414  DGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPN 473
             G W   R++LDL+ L F QG   M+N++C+LP+GS R   K YEEIHVPA+K +P    
Sbjct: 393  AGQWQAGRKMLDLNDLTFSQGSHLMSNKRCELPDGSYRRQKKSYEEIHVPALKPRPFAEG 452

Query: 474  EKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTIL 533
            EKL+ +SE+P+WAQPAF G   LNR+QSR+  SAL S +++LLCAPTGAGKTNVA+LT+L
Sbjct: 453  EKLVSVSELPKWAQPAFDGYKSLNRIQSRLCDSALRSKEHLLLCAPTGAGKTNVALLTML 512

Query: 534  QQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ 593
            Q++  +  +DGS     +KIVY+APMK+LV E+VG+ S RL  + + V E++GD  ++++
Sbjct: 513  QEIGNHLAEDGSVKLDEFKIVYIAPMKSLVQEMVGSFSKRLAPFGITVGEMTGDAQMSKE 572

Query: 594  QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ 653
            Q   TQ+IV TPEK+D++TRK G+R Y Q+V+LLIIDEIHLLHD+RGPVLESIV RT+RQ
Sbjct: 573  QFMATQVIVCTPEKYDVVTRKGGERAYNQMVRLLIIDEIHLLHDDRGPVLESIVVRTIRQ 632

Query: 654  IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713
            +E   +  RLVGLSATLPNY+DVA FLRV  E  L +FDNSYRPVPL QQYIG+  KK L
Sbjct: 633  MEQNHDECRLVGLSATLPNYQDVATFLRVKPEH-LHFFDNSYRPVPLEQQYIGVTEKKAL 691

Query: 714  QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVS 773
            +RFQ MN++ Y+K++  AGK QVL+FVHSRKETAKTA+AIRD  LE DTL  F++E S S
Sbjct: 692  KRFQAMNEVVYDKIMEHAGKSQVLVFVHSRKETAKTAKAIRDACLEKDTLSAFMREGSAS 751

Query: 774  REILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWG 833
             EIL++  +  K+ DLKDLLPYGFAIHHAGM R DR LVEDLF D H+QVL STATLAWG
Sbjct: 752  TEILRTEAEQAKNLDLKDLLPYGFAIHHAGMNRVDRTLVEDLFADRHIQVLFSTATLAWG 811

Query: 834  VNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRY 893
            VNLPAHTVIIKGTQIYNPEKG WTEL  LDIMQMLGRAGRPQYD  GEGI+IT HSEL+Y
Sbjct: 812  VNLPAHTVIIKGTQIYNPEKGRWTELGALDIMQMLGRAGRPQYDDRGEGILITNHSELQY 871

Query: 894  YLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGL 953
            YLSLMNQQLP+ESQ VS+L D LNAE+VLGTV +  EA NW+GYT+L++RML+NP LYG+
Sbjct: 872  YLSLMNQQLPVESQMVSRLTDMLNAEVVLGTVSSVSEATNWLGYTFLFVRMLKNPTLYGI 931

Query: 954  APEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTI 1013
              E  + D  L +RRADL+HTA  +LD+  L+KYD++SG  Q T+LGRIAS++Y ++ ++
Sbjct: 932  THEQARADPLLEQRRADLIHTACVLLDKAGLIKYDKRSGIIQATELGRIASHFYCTYESM 991

Query: 1014 STYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAK 1073
             TYN+ L  T  DI+L R+FS+S EFK ++VR +EK+EL K+ +  PIP+KE+L+E SAK
Sbjct: 992  QTYNKLLVETCSDIDLFRIFSMSSEFKLLSVRDEEKLELQKMAEHAPIPIKENLDEASAK 1051

Query: 1074 INVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMV 1133
             NVLLQAYISQLKLEG +L +DMVF+ QSAGRL RALFEIVL RGWA LA+K L L KMV
Sbjct: 1052 TNVLLQAYISQLKLEGFALQADMVFVAQSAGRLFRALFEIVLWRGWAGLAQKVLTLCKMV 1111

Query: 1134 TKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFV 1193
            T+R W    PL QF  IP+E++  ++KK+++++R YDL   +LG+LI+ PKMG+ L KF+
Sbjct: 1112 TQRQWGSLNPLHQFKKIPSEVVRSIDKKNYSFDRLYDLDQHQLGDLIKMPKMGKPLFKFI 1171

Query: 1194 HQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEY 1253
             QFPKL +   +QPITRT +++ELTITPDF WD+KVHG  E FW+ +ED DGE ILHHE+
Sbjct: 1172 RQFPKLEMTTLIQPITRTTMRIELTITPDFKWDEKVHGSAEGFWIFIEDTDGEKILHHEF 1231

Query: 1254 FMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPP 1313
            F+LK+++  ++H +   VP+++P+PP Y++R+VSD+W+G++TVLP+SFRHLILPEKYPPP
Sbjct: 1232 FLLKQKFCSDEHVVKMIVPMFDPMPPLYYVRIVSDRWIGAETVLPISFRHLILPEKYPPP 1291

Query: 1314 TELLDLQPLPVTALRNPLYEALY--QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKT 1371
            TELLDLQPLP++A+ N  ++ ++   GFK FNPIQTQVF  ++ +++NV+V AP GSGKT
Sbjct: 1292 TELLDLQPLPISAVTNKEFQTVFAESGFKVFNPIQTQVFRTVFESNENVIVCAPNGSGKT 1351

Query: 1372 ICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAM 1431
              +E A+LR+ +   E    +AVYI P+E +A + Y DW+ +    +G  +V LTGE  M
Sbjct: 1352 AIAELAVLRHFENTPEA---KAVYITPMEDMATKVYADWKRRLEPAIGHTIVLLTGEQTM 1408

Query: 1432 DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRM 1491
            DLKL ++GQ+IISTPE+WD +SRRWKQRK VQ V LFI D+LH+IG   G V EV+ SR 
Sbjct: 1409 DLKLAQRGQLIISTPERWDNISRRWKQRKSVQNVKLFIADDLHMIGASNGAVFEVVCSRT 1468

Query: 1492 RYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITN 1551
            RYI+SQ+E+ +R+VALS+SL NA+DLG W+G ++   FNF P  RPVPL++ I+  ++++
Sbjct: 1469 RYISSQLESAVRVVALSSSLTNARDLGMWLGCSASATFNFMPSTRPVPLDLEIKSFNLSH 1528

Query: 1552 FEARMQAMTKPTFTAIVQHAKN--EKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFL 1609
              +R  AM +P + AI +HA     KPALVFVP R+  R  AV L+T +  DG  K    
Sbjct: 1529 NASRFAAMERPVYQAICRHAGKLEPKPALVFVPVRRQTRPVAVALLTMALADGAPKRFLR 1588

Query: 1610 LWPAEEV-EPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKIC 1663
            L   ++  +  + +I++E L+ ++  GVG+LHEG    D  +V  LFE+  I++C
Sbjct: 1589 LAEHDDTFQALLADIEDESLRESVSCGVGFLHEGTAPKDVHIVQQLFESNAIQVC 1643



 Score =  320 bits (819), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 225/836 (26%), Positives = 405/836 (48%), Gaps = 45/836 (5%)

Query: 489  AFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNH 548
            A  G    N +Q++V+++   S +N+++CAP G+GKT +A L +L+            N 
Sbjct: 1315 AESGFKVFNPIQTQVFRTVFESNENVIVCAPNGSGKTAIAELAVLRHFE---------NT 1365

Query: 549  SNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVRELSGDQTLTRQQIEETQIIVTTPEK 607
               K VY+ PM+ +  +V  +   RL+      +  L+G+QT+  +  +  Q+I++TPE+
Sbjct: 1366 PEAKAVYITPMEDMATKVYADWKRRLEPAIGHTIVLLTGEQTMDLKLAQRGQLIISTPER 1425

Query: 608  WDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEH-IRLVGL 666
            WD I+R+   R   Q VKL I D++H++  + G V E + +RT R I +  E  +R+V L
Sbjct: 1426 WDNISRRWKQRKSVQNVKLFIADDLHMIGASNGAVFEVVCSRT-RYISSQLESAVRVVAL 1484

Query: 667  SATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEK 726
            S++L N  D+ ++L  +     F F  S RPVPL  +     +     RF  M    Y+ 
Sbjct: 1485 SSSLTNARDLGMWLGCS-ASATFNFMPSTRPVPLDLEIKSFNLSHNASRFAAMERPVYQA 1543

Query: 727  VVAVAGKHQ---VLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDM 783
            +   AGK +    L+FV  R++T   A A+   AL +    RFL+  +   +  Q+    
Sbjct: 1544 ICRHAGKLEPKPALVFVPVRRQTRPVAVALLTMALADGAPKRFLRL-AEHDDTFQALLAD 1602

Query: 784  VKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVII 843
            ++   L++ +  G    H G    D  +V+ LF    +QV V    + + + + A+ V++
Sbjct: 1603 IEDESLRESVSCGVGFLHEGTAPKDVHIVQQLFESNAIQVCVVPRGMCYQIEMSAYLVVV 1662

Query: 844  KGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLP 903
              TQ YN +   + +    D++ M+G A RP  DS  + +++   S+  YY   +   LP
Sbjct: 1663 MDTQFYNGKYHVYEDYPIADMLHMVGLANRPILDSDAKCVVMCQTSKRAYYKKFLCDPLP 1722

Query: 904  IESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDIT 963
            +ES     L D  NAEIV  T++N ++A +++ +T LY RM +NP  Y L     +    
Sbjct: 1723 VESHLDHCLHDHFNAEIVTKTIENKQDAIDYLTWTLLYRRMTQNPNYYNLQGTTHRH--- 1779

Query: 964  LGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPT 1023
            L +  ++LV      L+ +  +    +     + +LG IASYYYIS+ TI  ++  LK  
Sbjct: 1780 LSDALSELVELTLKDLENSKCIAVKDEMDTVSL-NLGMIASYYYISYQTIELFSMSLKEK 1838

Query: 1024 MGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVK-ESLEEPSAKINVLLQAYI 1082
                 L  + S S EF  V +R  E + L +L +R+P  +K +   +P  K+N+L+ A++
Sbjct: 1839 TKTRALIEIISASSEFGNVPMRHKEDVILRQLAERLPGQLKNQKFTDPHVKVNLLIHAHL 1898

Query: 1083 SQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQT 1142
            S++KL    L  D   I   A RL++A  +++   GW   A  A+ LS+M+T+ M+S + 
Sbjct: 1899 SRVKLTA-ELNKDTELIVLRACRLVQACVDVLSSNGWLSPAIHAMELSQMLTQAMYSNEP 1957

Query: 1143 PLRQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIRFPKMGRT-LHKFVHQFPKLI 1200
             L+Q       +L + + K+  +     +L   +  ++++        + +F + +P + 
Sbjct: 1958 YLKQLPHCSAALLERAKAKEVTSVFELLELENDDRSDILQMEGAELADVARFCNHYPSIE 2017

Query: 1201 LAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEP--------------FWVIVEDNDGE 1246
            +A  ++    T     L +      D+ + G   P              +W+++ D++  
Sbjct: 2018 VATELENDVVTS-NDNLMLAVSLERDNDIDGLAPPVVAPLFPQKRKEEGWWLVIGDSESN 2076

Query: 1247 YILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFR 1302
             +L      +K+  I E  S+        P   ++ +  +SD +LG+     V+F+
Sbjct: 2077 ALL-----TIKRLVINEKSSVQLDFAAPRPGHHKFKLFFISDSYLGADQEFDVAFK 2127


>sp|Q55CI8|HELCL_DICDI Activating signal cointegrator 1 complex subunit 3-like
            OS=Dictyostelium discoideum GN=ascc3l PE=3 SV=1
          Length = 2237

 Score = 1633 bits (4229), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 846/1741 (48%), Positives = 1177/1741 (67%), Gaps = 113/1741 (6%)

Query: 9    AEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRGRPPEL 68
            +E  AR KQY Y+ NS+LV  ++    +  EP GEPE+LWG++     GDR    +P EL
Sbjct: 2    SEELARSKQYGYKENSNLVFYSERNRSELKEPKGEPETLWGRLRGE-MGDRVNYSKPLEL 60

Query: 69   EEKLKK---------------------SAKKKKERDP------------------DADAA 89
             EK++                      + KK K ++P                    D  
Sbjct: 61   LEKMQNLKRKTIEKEGGDVNSSNDTYSTTKKVKNQNPLEKKSTNRKSNGNNNNEKPIDIL 120

Query: 90   AASE---GTYQPKTKETRAAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPD 146
            +A+E   G Y+PKTKETR  YE +L+ IQ+ +G QP  +V GA DEIL++LK+D ++ P+
Sbjct: 121  SATESFQGLYKPKTKETRITYETLLTFIQRYVGDQPTEVVKGALDEILSILKDDTIRAPE 180

Query: 147  KKKEIEKLLNPIPNHVFDQLVSIGKLITDYQD---AGDAAGNDAANGGEDLDDDMGVAVE 203
            KK EI KLL  + +  F +L  +GK ITD++D   A            + LDD+ GVAV 
Sbjct: 181  KKIEISKLLKGLNDVSFAELTQLGKQITDFKDSELAKQQQQQQQQQSMDSLDDEQGVAVI 240

Query: 204  FEENDDDEEESDLDM----------------------VQEEDEEEEEDVAEPNASGAMQM 241
             +E +++E  SD ++                       + +D E +      N     Q 
Sbjct: 241  IDEEEEEENLSDFEIRDDDDDDDDVDNNEVDDNNNNDSEAQDSEIQTKDENNNDDDENQK 300

Query: 242  ----------GGGIDDDDESGDANEGMSL-NVQDIDAYWLQRKISQAFDQQIDPQQCQKL 290
                          D  +   D N    L +  +ID++W+QRKIS+ F++  D    ++L
Sbjct: 301  IKENNNNNNKSQKPDTKNTKDDKNNNSKLISPNEIDSFWIQRKISE-FER--DHDLSKQL 357

Query: 291  AEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKI 350
            AE+ L IL + + R  E +L+     DK   +K ++ N+  +++CT LA+A++ +ERKKI
Sbjct: 358  AEKTLNILRQPNVRRCEQQLVDLFTIDKLDFLKLIINNKQTILYCTLLAKAENDQERKKI 417

Query: 351  EEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRDRRGLVD 410
            E+EM    P   +IL++L     TA   +K +EK+   E+ + KD       + ++  + 
Sbjct: 418  EDEMSS-NPVTLSILNRLKGNEVTAATTEKTIEKT---ESNK-KDVEMKQQQQQQQDEIK 472

Query: 411  RDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPL 470
            +         ++LL+L+ L+FQQG   M N++   P+GS+R   KG+EEIHVPA  + P 
Sbjct: 473  K--------PKKLLNLEELSFQQGSHLMTNKEFKFPKGSKREQYKGFEEIHVPARANPPF 524

Query: 471  DPNEKLIKISEMPEWAQPAFK--GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVA 528
            +PNE+LI I E+PEW++  F+  G+  LNRVQS+++  A  + +N+LL APT +GKTNVA
Sbjct: 525  NPNERLISIEELPEWSRLPFEESGVKSLNRVQSKLFDCAFKTDNNLLLSAPTSSGKTNVA 584

Query: 529  VLTILQQLALNRN-DDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGD 587
            +LTIL ++  NR+ D G      +KIVY+APMK+LV E+VGN S RL+ Y + V EL+GD
Sbjct: 585  MLTILHEIGKNRDRDSGKIRLDAFKIVYIAPMKSLVQEMVGNFSKRLKSYGIVVNELTGD 644

Query: 588  QTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIV 647
            Q+LT +QI ETQIIVTTPEKWDIITRKSGDR YTQLVKL+IIDEIHLLHD RGPVLE IV
Sbjct: 645  QSLTNKQISETQIIVTTPEKWDIITRKSGDRAYTQLVKLIIIDEIHLLHDERGPVLECIV 704

Query: 648  ARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGI 707
            ART+R IE+T++ +RLVGLSATLPNYEDVA FLRV  + G+FYFD+SYRP+PL QQYIGI
Sbjct: 705  ARTLRMIESTQQMVRLVGLSATLPNYEDVATFLRVEPD-GVFYFDSSYRPIPLEQQYIGI 763

Query: 708  QVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFL 767
               + +++ Q  ND+ + KV    G HQ+LIFVHSR+ETAKT + +RD A+E+ ++ R++
Sbjct: 764  S-DRGIKQLQRCNDITFTKVSERVGDHQILIFVHSRRETAKTGKDLRDRAVEDQSIDRYI 822

Query: 768  KEDSVSREILQ-SHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVS 826
            + D  SREIL+ + +  +++ +LKDLLPYG  IHHAG++R DR LVEDLFGD  +QVL+S
Sbjct: 823  R-DPASREILRATASKQIQNAELKDLLPYGIGIHHAGLSRSDRSLVEDLFGDNRIQVLIS 881

Query: 827  TATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT 886
            TATLAWGVNLPAHTVIIKGTQIYNPEKG W ELSPLD+ QMLGRAGRP +D  GEGIIIT
Sbjct: 882  TATLAWGVNLPAHTVIIKGTQIYNPEKG-WCELSPLDVTQMLGRAGRPPFDKEGEGIIIT 940

Query: 887  GHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLR 946
               EL++YLSL+N QL IESQF+S++AD LNAEIVLG++Q  ++A NW+GYTYLYI M+R
Sbjct: 941  SQHELQFYLSLLNTQLSIESQFISRIADNLNAEIVLGSIQTVRDAVNWLGYTYLYICMIR 1000

Query: 947  NPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYY 1006
            NP LY ++ +  ++D  L +RR DLVH+AATIL++N+L+KYDRKSG  Q T+LG++AS+Y
Sbjct: 1001 NPPLYEISYDDFEKDPLLEQRRLDLVHSAATILEKNSLIKYDRKSGKLQSTELGKVASHY 1060

Query: 1007 YISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKES 1066
            YI++ ++S Y EHLKP+M DIEL R+FSLS EFK V VR+ EK EL KLL+RVPIP+KE+
Sbjct: 1061 YITNSSMSIYQEHLKPSMSDIELLRVFSLSSEFKNVVVREGEKFELEKLLERVPIPIKEN 1120

Query: 1067 LEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKA 1126
            +EEPS+KINVLLQ YIS LKL+G +L  DM +I QSA R+ RALFEIVLK+GWAQLA+K 
Sbjct: 1121 IEEPSSKINVLLQTYISNLKLDGFALVVDMFYIAQSASRITRALFEIVLKKGWAQLAKKI 1180

Query: 1127 LNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMG 1186
            LNL+KM+  +MWS Q+PLRQF+ I  ++L +LE++    E  Y+ + Q+LG  I+ P  G
Sbjct: 1181 LNLAKMIDSKMWSSQSPLRQFHKISPKVLNQLERRGIPIEDLYEYNSQQLGNAIQNPSEG 1240

Query: 1187 RTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGE 1246
            + L   +H FPKL L AHVQPI   +L+VEL+ITPDF +D++ H     +W+IVED DGE
Sbjct: 1241 KQLFDLIHNFPKLDLTAHVQPILHGLLRVELSITPDFQYDERYHNNSIGWWIIVEDVDGE 1300

Query: 1247 YILHHEYFMLKKQYIE-EDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLI 1305
             IL+ EYF LKK+ +  ED  ++FTVP+ +PLPPQY++RV+SD W+G++  LP+SF+HLI
Sbjct: 1301 RILYFEYFSLKKKMVNGEDQLVSFTVPLSQPLPPQYYVRVISDHWIGAEYSLPISFQHLI 1360

Query: 1306 LPEKYPPPTELLDLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAA 1364
            LPEKYPP   LLDLQPLP+  L++P  E++++  F  FN IQTQVF  +Y ++DN  ++A
Sbjct: 1361 LPEKYPPCRPLLDLQPLPIQVLKDPKAESIFKPTFSIFNAIQTQVFNCMYQSNDNAFISA 1420

Query: 1365 PTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG--QGLGMRV 1422
            PT SGKT+C+E A++R  ++  +  V   VY+AP++ LA  R +DW  KFG     G+ V
Sbjct: 1421 PTNSGKTVCAEIALIRCFKQNPKAKV---VYLAPMQDLASVRLKDWSNKFGVKSPFGLVV 1477

Query: 1423 VELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 1482
             +LTG+   D K+L++  II++  EKWD LSR+WKQRK +Q ++L I+DELHLIGG+ GP
Sbjct: 1478 SDLTGDAVTDNKILDRSNIIVTNCEKWDILSRKWKQRKALQSINLLIVDELHLIGGEYGP 1537

Query: 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEI 1542
             +E++VSRMRYI++Q  N +R++ALS+S+ANA+DL  WIGAT    +NF P VRP+P+E 
Sbjct: 1538 TMEIVVSRMRYISTQTGNALRVIALSSSIANARDLVLWIGATPQTCYNFHPNVRPIPVEY 1597

Query: 1543 HIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLM-TYSSMD 1601
             IQG +  +F ARM AMTKPT   + ++ KN++ ++VFVP+RK  R  A D++   SS +
Sbjct: 1598 QIQGFEFPHFNARMLAMTKPTVYEVAKN-KNQQ-SIVFVPTRKLSRSLAADIIANVSSFE 1655

Query: 1602 GDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIK 1661
                  +L+     + P+++++    LK +L+ GV + H+GL + ++ VV  LF +G I+
Sbjct: 1656 DTLTKPYLVCEEHVLTPYLEDVDSFALKQSLQMGVAFYHDGLTERERRVVEILFRSGSIR 1715

Query: 1662 I 1662
            +
Sbjct: 1716 V 1716



 Score =  305 bits (781), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 208/677 (30%), Positives = 352/677 (51%), Gaps = 35/677 (5%)

Query: 486  AQPAFK-GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDG 544
            A+  FK   +  N +Q++V+     S DN  + APT +GKT  A + +++    N     
Sbjct: 1387 AESIFKPTFSIFNAIQTQVFNCMYQSNDNAFISAPTNSGKTVCAEIALIRCFKQN----- 1441

Query: 545  SFNHSNYKIVYVAPMKALVAEVVGNLSNRLQM---YDVKVRELSGDQTLTRQQIEETQII 601
                   K+VY+APM+ L +  + + SN+  +   + + V +L+GD     + ++ + II
Sbjct: 1442 ----PKAKVVYLAPMQDLASVRLKDWSNKFGVKSPFGLVVSDLTGDAVTDNKILDRSNII 1497

Query: 602  VTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIET-TKEH 660
            VT  EKWDI++RK   R   Q + LLI+DE+HL+    GP +E +V+R +R I T T   
Sbjct: 1498 VTNCEKWDILSRKWKQRKALQSINLLIVDELHLIGGEYGPTMEIVVSR-MRYISTQTGNA 1556

Query: 661  IRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMN 720
            +R++ LS+++ N  D+ L++     +  + F  + RP+P+  Q  G +      R   M 
Sbjct: 1557 LRVIALSSSIANARDLVLWIGAT-PQTCYNFHPNVRPIPVEYQIQGFEFPHFNARMLAMT 1615

Query: 721  D-LCYEKVVAVAGKHQVLIFVHSRK-ETAKTARAIRDTALENDTLGR-FLKEDSVSREIL 777
                YE  VA     Q ++FV +RK   +  A  I + +   DTL + +L        +L
Sbjct: 1616 KPTVYE--VAKNKNQQSIVFVPTRKLSRSLAADIIANVSSFEDTLTKPYL---VCEEHVL 1670

Query: 778  QSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGV-NL 836
              + + V S  LK  L  G A +H G+T  +R++VE LF  G ++VL++T ++AW + N+
Sbjct: 1671 TPYLEDVDSFALKQSLQMGVAFYHDGLTERERRVVEILFRSGSIRVLIATHSVAWLLDNV 1730

Query: 837  PAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQ-----YDSYGEGIIITGHSEL 891
             A  V+I GTQ+Y  +   + +    DI+QM+GRAG+ +      +   + +++    + 
Sbjct: 1731 FAQLVVIMGTQLYQGKDIRYIDYPINDILQMIGRAGKQEGGGVISNKVAKVLLLCHAPKK 1790

Query: 892  RYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALY 951
             YY   +N+ LP+ES     L DQ N+EIV  T+   ++A +++ +T+LY R+ +NP  Y
Sbjct: 1791 EYYKMFLNEPLPVESHLDHCLHDQFNSEIVTKTITKKQDALDYLTWTFLYRRLNQNPNYY 1850

Query: 952  GLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHG 1011
             L+       + L E  ++LV      L+++N +            +LG IASYYY+ + 
Sbjct: 1851 NLSG---VSHLHLSEHLSELVENTLVELEQSNCITIQDDQDKVSPLNLGIIASYYYLKYQ 1907

Query: 1012 TISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPV-KESLEEP 1070
            TI  +   LK T     +  + S + EF  + +R  E   L KL   +P  + K + +E 
Sbjct: 1908 TIELFGSSLKSTTRRRGIMDIISNAPEFNSLPIRHREDQILMKLASHLPQKIDKPNYQEI 1967

Query: 1071 SAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLS 1130
            S K+NVLLQ + S+  +    L  D  FI ++A RLL+A+ +++    W Q A  A+ LS
Sbjct: 1968 STKVNVLLQCHFSRESISA-DLYQDQKFILENATRLLQAIVDVISSNSWLQPAIAAMELS 2026

Query: 1131 KMVTKRMWSVQTPLRQF 1147
            +M+T+ MW   +  +Q 
Sbjct: 2027 QMITQAMWDSDSVFKQL 2043


>sp|Q9UT24|BRR2_SCHPO Pre-mRNA-splicing factor brr2 OS=Schizosaccharomyces pombe (strain
            972 / ATCC 24843) GN=brr2 PE=1 SV=1
          Length = 2176

 Score = 1581 bits (4093), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 816/1688 (48%), Positives = 1120/1688 (66%), Gaps = 80/1688 (4%)

Query: 17   QYEYRANSSLVLTTDSR--PRDTHEPTGEPESLWGKIDPRSFGDRAFRGRPPELEEKLKK 74
            QY Y A S+LV   D R   R   EPTGEPESL  ++     G RA   +P  L  +L +
Sbjct: 29   QYSYSAMSNLVTQADRRFVSRRDAEPTGEPESLVNRVSIADMGSRARIEKPSTLPLELTQ 88

Query: 75   SAKKKKERDPDADAAAASEGT-----------------------YQPKTKETRAAYEAML 111
              ++   R P  DA +   G                        Y P T ETR  Y+ +L
Sbjct: 89   EVQEV--RLPRKDAESLEIGIRQPEREKRSSAILKYFDSFEILKYNPLTDETREVYDYIL 146

Query: 112  SVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNP-IPNHVFDQLVSIG 170
            S IQQ LG Q   I+  AAD I+ +LK+ ++    +KK+IE++L+  +P   F QLV++G
Sbjct: 147  SFIQQYLGDQSPEILRSAADLIIELLKDSSLDEQGRKKQIEEVLSTELPQDRFSQLVNLG 206

Query: 171  KLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQE--------- 221
              +TDY    +   N+         ++ GV V F E D++EE  +     E         
Sbjct: 207  NRLTDYTVEQEEELNEEGV------NESGVPVLFNEADEEEEAVEAMEEDEVAEDEDVVL 260

Query: 222  ----EDEEEEEDVAEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQA 277
                  EEE++++  P+               ++    E  +++ ++IDA+WLQR+I++ 
Sbjct: 261  ETSISQEEEKKNIENPDTEVTFISA-------DTKKVTEIPTVHPREIDAFWLQREIAKY 313

Query: 278  FDQQIDPQQCQKLAEEVLKIL-AEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCT 336
            F    D   CQ+   +  + L A+ D  E+EN+L+    ++ F L++ L +NR  +V CT
Sbjct: 314  F---ADAVVCQEKTNQAFEALSADYDLGELENELMSIFDYEHFYLVQLLTKNRWTIVSCT 370

Query: 337  RLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKN-LEKSIREEARRLKD 395
             L RA   EER  +EE++   G   + IL+ L     T  +   N L  ++ E+A     
Sbjct: 371  MLKRAATDEERLGVEEQIRAAG--RSWILEALRPGAITIPDDGLNELNNNVVEKAEPAPV 428

Query: 396  ESASDGGRDRRGLVDRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNK 455
                         + +      +  +  +DL+   F +G   M+N+   LPEGS R T K
Sbjct: 429  SEIP---------LSKTLTSHKIVPKHQVDLENYVFTEGSRLMSNKAVKLPEGSFRRTGK 479

Query: 456  GYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNIL 515
            GYEEIHVPA     L  +E+L+KI E+PEW+  AF     LNR+QS +Y  A  + +NIL
Sbjct: 480  GYEEIHVPAPNKAVLGADERLVKIKELPEWSHQAFLNTQSLNRIQSHLYPIAFGTDENIL 539

Query: 516  LCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ 575
            LCAPTGAGKTNVA+L IL +L  +  +D SFN  N+KIVY+AP+KALV E+V N S RL 
Sbjct: 540  LCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYIAPLKALVQEMVNNFSKRLT 599

Query: 576  MYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635
             Y+++V EL+GD  LT+QQI ETQIIVTTPEKWDIITRK+ D +Y  LV+L+IIDE+HLL
Sbjct: 600  PYNIRVAELTGDSQLTKQQISETQIIVTTPEKWDIITRKANDLSYVNLVRLVIIDEVHLL 659

Query: 636  HDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSY 695
            HD RGPVLESIVAR  R  E T E +RLVGLSATLPNY DVA FL V+ +KGLFYFD++Y
Sbjct: 660  HDERGPVLESIVARIFRHQEETLEQVRLVGLSATLPNYTDVASFLHVDPKKGLFYFDSTY 719

Query: 696  RPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRD 755
            RP PL Q++IGI  K P +R Q  N+ CYEKV+  AGK+QVLIFVHSRKETAKTAR IRD
Sbjct: 720  RPCPLKQEFIGITEKTPFKRMQTTNEACYEKVMQHAGKNQVLIFVHSRKETAKTARFIRD 779

Query: 756  TALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDL 815
             ALE +T+G  L+ D+ SREIL++  D     +LKDLLPYGFAIHHAGM R DRQ  EDL
Sbjct: 780  KALEEETIGHLLRSDAASREILRAEADSTSDENLKDLLPYGFAIHHAGMRREDRQTSEDL 839

Query: 816  FGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQ 875
            F DG +QVLVSTATLAWGVNLPAHTVIIKGTQ+Y+PEKG WTELSP D++QMLGRAGRPQ
Sbjct: 840  FADGTIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGIWTELSPQDVLQMLGRAGRPQ 899

Query: 876  YDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWI 935
            +D+YGEGIIIT HSEL+YYLSLMNQQLPIESQF+ +LAD LNAE+ LGTV++ ++  +W+
Sbjct: 900  FDTYGEGIIITAHSELQYYLSLMNQQLPIESQFMRRLADCLNAEVSLGTVRSIEDGVDWL 959

Query: 936  GYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQ 995
            GYTYLY+RMLR+PALY + PE   +D  L ++RADL+H+AA +L++  L+ Y+R+SG   
Sbjct: 960  GYTYLYVRMLRSPALYSVGPE-YDDDKYLVQKRADLLHSAAILLEKCKLLVYNRQSGTLT 1018

Query: 996  VTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKL 1055
             T+LG++A+ YY++H +++ YN  L  T   IEL R+FS S+EFK++ VR++EK+ELAKL
Sbjct: 1019 ATELGKVAASYYVTHNSMAIYNRLLMQTTSFIELFRVFSFSDEFKHIPVREEEKVELAKL 1078

Query: 1056 LDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVL 1115
            L+RVPIP++E L+EP+AKIN LLQ+YIS+ +L+G +L +DMV++TQSAGR++RA+FEI L
Sbjct: 1079 LERVPIPIRERLDEPAAKINALLQSYISRQRLDGFALVADMVYVTQSAGRIMRAIFEISL 1138

Query: 1116 KRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQE 1175
            +RGW+ +A  +L+  KM+ KR+W   +PLRQF   P+E++ ++EKK+F W+RY+DL P E
Sbjct: 1139 RRGWSSVATLSLDTCKMIEKRLWPTMSPLRQFPNCPSEVIRRVEKKEFPWQRYFDLDPAE 1198

Query: 1176 LGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEP 1235
            LGEL+  PK GR ++  V  FP+L + AHVQPITR++++VEL I   F WDD + G  E 
Sbjct: 1199 LGELVGVPKEGRRVYNMVQSFPRLSVEAHVQPITRSLVRVELVINSQFNWDDHLSGTSEA 1258

Query: 1236 FWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQT 1295
            FW++VED DG+ +LH+E F L K+Y +++H +NFTVP+ EPLPP YFI++VSD+WL S T
Sbjct: 1259 FWILVEDVDGDRLLHYEQFFLLKKYKDDEHIVNFTVPLLEPLPPCYFIKIVSDRWLHSIT 1318

Query: 1296 VLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYN 1355
             +P+SF+ LI+PEK+P PT LLDLQ  PV++L NP + +LY  FK FN IQTQVF  +Y 
Sbjct: 1319 KVPLSFQRLIMPEKFPAPTPLLDLQNAPVSSLNNPSFISLYPNFKFFNKIQTQVFNSVYK 1378

Query: 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415
            T+D+V + AP GSGKT+C+E A+L +H    + G   AVYIAP++ +   RY +W  KF 
Sbjct: 1379 TNDSVFIGAPNGSGKTVCAELALL-HHWSQEDYGT--AVYIAPIQEIVDRRYEEWYGKFS 1435

Query: 1416 Q-GLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH 1474
              G G  +V+LTGE + DLKL++   +I  TP +WD+LS+RW+  + +Q+V  +I DEL 
Sbjct: 1436 DLGDGKVLVKLTGERSQDLKLIQVADLIFCTPSQWDSLSKRWRSMRSIQKVDFYICDELQ 1495

Query: 1475 LIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPG 1534
            L+GG  GP+ E+++SR+RY+A Q+E  IR+V LS S+ANA+DLGEW+G +   +FNF P 
Sbjct: 1496 LLGGFYGPLYEIVISRIRYMAVQLEKNIRVVGLSVSVANARDLGEWLGTSPQCIFNFSPK 1555

Query: 1535 VRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDL 1594
             RP PL IH+Q   IT+F + M AM+KP + ++       K  +VF P RK  +  A DL
Sbjct: 1556 DRPNPLTIHLQSFSITHFPSLMLAMSKPIYRSLKNFISQRKSTIVFTPDRKVAKQLAFDL 1615

Query: 1595 MTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSAL 1654
            +T+S  D D+     L+   E E F + +++  L+ +L+HG+ Y+ E  +  DQ +V  L
Sbjct: 1616 VTFSMADEDE----YLFSLMENEAF-NKVEDAALQQSLKHGIAYISEITSSNDQNIVQYL 1670

Query: 1655 FEAGKIKI 1662
            +  G IK+
Sbjct: 1671 YRHGLIKV 1678



 Score =  220 bits (560), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 170/686 (24%), Positives = 334/686 (48%), Gaps = 44/686 (6%)

Query: 488  PAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFN 547
            P FK     N++Q++V+ S   + D++ + AP G+GKT  A L +L   +  + D G+  
Sbjct: 1360 PNFKF---FNKIQTQVFNSVYKTNDSVFIGAPNGSGKTVCAELALLHHWS--QEDYGT-- 1412

Query: 548  HSNYKIVYVAPMKALV----AEVVGNLSNRLQMYDVKVR-ELSGDQTLTRQQIEETQIIV 602
                  VY+AP++ +V     E  G  S+   + D KV  +L+G+++   + I+   +I 
Sbjct: 1413 -----AVYIAPIQEIVDRRYEEWYGKFSD---LGDGKVLVKLTGERSQDLKLIQVADLIF 1464

Query: 603  TTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIR 662
             TP +WD ++++       Q V   I DE+ LL    GP+ E +++R        +++IR
Sbjct: 1465 CTPSQWDSLSKRWRSMRSIQKVDFYICDELQLLGGFYGPLYEIVISRIRYMAVQLEKNIR 1524

Query: 663  LVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDL 722
            +VGLS ++ N  D+  +L  +  + +F F    RP PL+       +         M+  
Sbjct: 1525 VVGLSVSVANARDLGEWLGTS-PQCIFNFSPKDRPNPLTIHLQSFSITHFPSLMLAMSKP 1583

Query: 723  CYEKVVA-VAGKHQVLIFVHSRKETAKTARAIRDTAL--ENDTLGRFLKEDSVSREILQS 779
             Y  +   ++ +   ++F   RK   + A  +   ++  E++ L   ++ ++ ++     
Sbjct: 1584 IYRSLKNFISQRKSTIVFTPDRKVAKQLAFDLVTFSMADEDEYLFSLMENEAFNK----- 1638

Query: 780  HTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAH 839
                V+   L+  L +G A      +  D+ +V+ L+  G ++VL+++  + + +   ++
Sbjct: 1639 ----VEDAALQQSLKHGIAYISEITSSNDQNIVQYLYRHGLIKVLIASRDVIYSLKAKSN 1694

Query: 840  TVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMN 899
             VI+ GTQ Y+ ++  + +    +++QMLG           + I++T  ++  YY   +N
Sbjct: 1695 AVIVMGTQYYDGKEHRYIDYPISELLQMLGFTASIGSSELSQVILMTVTTKKEYYKKFLN 1754

Query: 900  QQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLK 959
            + LP+ES     L D   +EI   T+++ ++A +W+ ++Y+Y R++ NPA YGL      
Sbjct: 1755 EPLPMESHLQVWLHDAFVSEISTQTIESKQDAVDWLTWSYMYRRLVANPAYYGL------ 1808

Query: 960  EDIT---LGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTY 1016
            +DIT   + E  +DLV T    L    L+  D +       +L  IAS+Y I++ T+ T+
Sbjct: 1809 QDITHESVSEFLSDLVETTMNDLSEARLITVDDEDDSCVALNLAMIASHYGITYITMQTF 1868

Query: 1017 NEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKE-SLEEPSAKIN 1075
               L        L  + + + E++ + +R+ E + L ++  R+P+ +   + E+P  K  
Sbjct: 1869 ALSLSERTKMKGLLEIVTSAAEYEQLPIRKYEDIVLERIHSRLPVRLSNPNYEDPHTKSF 1928

Query: 1076 VLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTK 1135
            +LL A+ S+ +L    L  D  FI      LL A  + +   G      + + +S+MVT+
Sbjct: 1929 ILLAAHFSRFELPP-GLVIDQKFILTRVHNLLGACVDTLSSEGHLIACIRPMEMSQMVTQ 1987

Query: 1136 RMWSVQTPLRQFNGIPNEILMKLEKK 1161
             +W   +PL+Q     + ++ +  K+
Sbjct: 1988 ALWDRDSPLKQIPYFDDALIERCNKE 2013


>sp|F1NTD6|ASCC3_CHICK Activating signal cointegrator 1 complex subunit 3 OS=Gallus gallus
            GN=ascc3 PE=3 SV=2
          Length = 2211

 Score = 1256 bits (3249), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 650/1405 (46%), Positives = 921/1405 (65%), Gaps = 49/1405 (3%)

Query: 293  EVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEE 352
            E+L     GD  E++N+L   L  + F LI+ LL+NR  +V   R    Q+  + + ++E
Sbjct: 261  EMLASPKSGD--ELQNELFELLGPEGFELIEKLLQNRSVIV--ERSLTCQNDNKFQTLQE 316

Query: 353  EMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREE----ARRLKDESASDGGRDRRGL 408
            +      + A        T     E++K L K  R E    ARR K ++  DG     GL
Sbjct: 317  QCKKFIGENAKPNYGCQVT--IQSEQEKLLMKQYRREEKRNARREK-QAGEDGEVSGEGL 373

Query: 409  VDRDA---------------DGGWLGQRQLLDLDTLAF----------QQGGLFMANRKC 443
            +  D                    LG+++ +DL+ + +           +   F+   K 
Sbjct: 374  LCFDPKELRLQRELALLNARSVPILGRQREVDLERIHYPHVYDSRAEAMKTSAFIGGAKV 433

Query: 444  DLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRV 503
             LPE  QR  NK YEE+ +P  +  P+   EK++ I ++ E  Q AFKGM +LNR+QS V
Sbjct: 434  FLPESVQRENNKMYEEVKIPHSEPMPIGIEEKIVYIKDLDEIGQLAFKGMKRLNRIQSIV 493

Query: 504  YKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563
            +++A ++ +N+L+CAPTGAGKTN+A+LT+L ++       G      +KIVYVAPMKAL 
Sbjct: 494  FETAYNTNENMLICAPTGAGKTNIAMLTVLHEIR-QHVQHGVIKKDEFKIVYVAPMKALA 552

Query: 564  AEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS-GDRTYTQ 622
            AE+    S RL+   + V+EL+GD  L++ +I  TQ++VTTPEKWD++TRKS GD   +Q
Sbjct: 553  AEMTNYFSKRLEPLGITVKELTGDMQLSKGEILRTQMLVTTPEKWDVVTRKSVGDVALSQ 612

Query: 623  LVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV 682
            LVKLLI+DE+HLLH++RGPVLESIVART+RQ+E+T+  IR++GLSATLPNY DVA FL V
Sbjct: 613  LVKLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHV 672

Query: 683  NLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVH 741
            N   GLFYFD+ +RPVPL Q +IGI+    +Q+   M+++CYE V+  +   HQV++FVH
Sbjct: 673  NPYIGLFYFDSRFRPVPLGQTFIGIKTTNKVQQLNHMDEVCYENVLKQIMAGHQVMVFVH 732

Query: 742  SRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHH 801
            +R  T +TA A+R+ A  N  +  FL          +      ++  L++L P GF+IHH
Sbjct: 733  ARNATVRTAMALREKAKNNGHICHFLSPQGSDYGQAEKQVQRSRNKQLRELFPDGFSIHH 792

Query: 802  AGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSP 861
            AGM R DR LVE+LF +GH++VLV TATLAWGVNLPAH V+IKGTQIY  ++G++ +L  
Sbjct: 793  AGMLRQDRSLVENLFSNGHIKVLVCTATLAWGVNLPAHAVVIKGTQIYAAKRGSFVDLGI 852

Query: 862  LDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIV 921
            LD+MQ+ GRAGRPQ+D +GEGIIIT H +L +YL+L+ QQ PIESQF+  LAD LNAEI 
Sbjct: 853  LDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLTLLTQQNPIESQFLESLADNLNAEIA 912

Query: 922  LGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDR 981
            LGTV N +EA  WI YTYLY+RM  NP +YG++ +  + D  L + R  LV      LD+
Sbjct: 913  LGTVTNVEEAVKWISYTYLYVRMRANPLVYGISHKAYQMDPGLEKHREQLVIEVGRKLDK 972

Query: 982  NNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKY 1041
              +++++ ++G+F  TDLGR AS+YYI + TI T+NE       + ++  + S +EEF+ 
Sbjct: 973  ARMIRFEERTGFFSSTDLGRTASHYYIKYNTIETFNELFDAHKTEGDILAIVSKAEEFEQ 1032

Query: 1042 VTVRQDEKMELAKLL-DRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFIT 1100
            + VR++E  EL  LL D   +P    +E    KIN+LLQ YIS+ +L+  SL SD  ++ 
Sbjct: 1033 IKVREEEIEELDTLLNDFCELPAPGGVENNYGKINILLQTYISRGELDSFSLISDSAYVA 1092

Query: 1101 QSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEK 1160
            Q+A R++RALFEI L++ W  +  + LNLSK++ KR+W   +PLRQF+ +P  +L KLE+
Sbjct: 1093 QNAARIVRALFEIALRKRWPAMTYRLLNLSKVIDKRLWGWVSPLRQFSVLPPSVLSKLEE 1152

Query: 1161 KDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTIT 1220
            K+   ++  D+   E+G ++   K+G  + + VHQ P + + A +QPITRTVL+V L IT
Sbjct: 1153 KNLTVDKMKDMRKDEIGHMLHHVKIGLKVKQCVHQIPSIAMEATIQPITRTVLRVRLNIT 1212

Query: 1221 PDFLWDDKVHGYV-EPFWVIVEDNDGEYILHHEYFMLKKQYI--EEDHSLNFTVPIYEPL 1277
            PDF W+D+VHG V EP+W+ VED   ++I H EYF+++K+ +  +E   L FT+PI+EPL
Sbjct: 1213 PDFTWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFIIQKKQVITKEPQLLVFTIPIFEPL 1272

Query: 1278 PPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQ 1337
            P QY+IR VSD+WLG++ V  ++F+HLILPE++PP TELLDLQPLPVTAL +P YE LY+
Sbjct: 1273 PSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPLPVTALGHPEYEVLYK 1332

Query: 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397
             F HFNPIQTQ+F  LY+TD NVL+ APTGSGKT+ +E AI R   K   +   +AVYIA
Sbjct: 1333 -FTHFNPIQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKYPTS---KAVYIA 1388

Query: 1398 PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWK 1457
            PL+AL +ER  DW+++  + LG +VVELTG+   D++ + +  +I++TPEKWD +SR W+
Sbjct: 1389 PLKALVRERIEDWKVRIEEKLGKKVVELTGDVTPDMRAIAQADLIVTTPEKWDGVSRSWQ 1448

Query: 1458 QRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDL 1517
             R YVQ+VS+ IIDE+HL+G + GPVLEVIVSR  +I+S  E  +R+V LST+LANA+DL
Sbjct: 1449 NRSYVQKVSILIIDEIHLLGDERGPVLEVIVSRTNFISSHTEKPVRVVGLSTALANARDL 1508

Query: 1518 GEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPA 1577
             +W+     GLFNF P VRPVPLE+HIQG    ++  RM  M KP F AI  H+   KP 
Sbjct: 1509 ADWLNINQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMARMNKPAFQAIRSHSP-AKPV 1567

Query: 1578 LVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637
            L+FV SR+  RLT++DL+ + + + D K  +L     E+   I  +++  LK TL  G+G
Sbjct: 1568 LIFVSSRRQTRLTSLDLIAFLATEDDPKQ-WLKMDEREMNDIIGTVRDSNLKLTLAFGIG 1626

Query: 1638 YLHEGLNKTDQEVVSALFEAGKIKI 1662
              H GL++ D++ V  LF   KI++
Sbjct: 1627 MHHAGLHERDRKTVEELFVNCKIQV 1651



 Score =  386 bits (992), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 237/675 (35%), Positives = 373/675 (55%), Gaps = 25/675 (3%)

Query: 472  PNEKLIKISEMPEWA--QPAFKGM---TQLNRVQSRVYKSALSSADNILLCAPTGAGKTN 526
            P+ +L+ +  +P  A   P ++ +   T  N +Q++++ +   +  N+LL APTG+GKT 
Sbjct: 1307 PHTELLDLQPLPVTALGHPEYEVLYKFTHFNPIQTQIFHTLYHTDCNVLLGAPTGSGKTV 1366

Query: 527  VAVLTILQQLALNRNDDGSFN-HSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVREL 584
             A L I +           FN +   K VY+AP+KALV E + +   R++     KV EL
Sbjct: 1367 AAELAIFR----------VFNKYPTSKAVYIAPLKALVRERIEDWKVRIEEKLGKKVVEL 1416

Query: 585  SGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLE 644
            +GD T   + I +  +IVTTPEKWD ++R   +R+Y Q V +LIIDEIHLL D RGPVLE
Sbjct: 1417 TGDVTPDMRAIAQADLIVTTPEKWDGVSRSWQNRSYVQKVSILIIDEIHLLGDERGPVLE 1476

Query: 645  SIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQY 704
             IV+RT      T++ +R+VGLS  L N  D+A +L +N + GLF F  S RPVPL    
Sbjct: 1477 VIVSRTNFISSHTEKPVRVVGLSTALANARDLADWLNIN-QMGLFNFRPSVRPVPLEVHI 1535

Query: 705  IGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLG 764
             G   +    R   MN   ++ + + +    VLIFV SR++T  T+  +       D   
Sbjct: 1536 QGFPGQHYCPRMARMNKPAFQAIRSHSPAKPVLIFVSSRRQTRLTSLDLIAFLATEDDPK 1595

Query: 765  RFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVL 824
            ++LK D   RE +      V+ ++LK  L +G  +HHAG+   DR+ VE+LF +  +QVL
Sbjct: 1596 QWLKMDE--RE-MNDIIGTVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKIQVL 1652

Query: 825  VSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGII 884
            ++T+TLAWGVN PAH VI+KGT+ Y+ +   + +    D++QM+GRAGRPQ+D  G+ +I
Sbjct: 1653 IATSTLAWGVNFPAHLVIVKGTEYYDGKTRRYVDYPITDVLQMMGRAGRPQFDDQGKAVI 1712

Query: 885  ITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRM 944
            +    +  +Y   + +  P+ES  +  LAD LNAEI  GT+ + ++A ++I +TY + R+
Sbjct: 1713 LVHDIKKDFYKKFLYEPFPVESSLLDVLADHLNAEIAAGTITSKQDAMDYITWTYFFRRL 1772

Query: 945  LRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIAS 1004
            + NP  Y L  + +  D T+ +  + LV  +   L+ +  ++    +   +    GRIAS
Sbjct: 1773 IMNPTYYNL--DNVSHD-TMNKYLSSLVEKSLFDLECSYCIEIGEDNRTIEPLTYGRIAS 1829

Query: 1005 YYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVK 1064
            YYY+ H TI  + + LKP     EL  + + ++E+  + VR +E    ++L   +PI V 
Sbjct: 1830 YYYLKHPTIGMFKDQLKPESSVEELLLILTNADEYTDLPVRHNEDQMNSELAKHLPIEVN 1889

Query: 1065 -ESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLA 1123
              S +    K ++LLQA+ S   L      +D   +   A R+ +A+ ++    GW   A
Sbjct: 1890 PHSFDSSHTKTHLLLQAHFSHAILPCPDYATDTKTVLDQAIRICQAMLDVTAHHGWLVAA 1949

Query: 1124 EKALNLSKMVTKRMW 1138
                NL +MV +  W
Sbjct: 1950 LNITNLVQMVVQGRW 1964


>sp|E1BNG3|ASCC3_BOVIN Activating signal cointegrator 1 complex subunit 3 OS=Bos taurus
            GN=ascc3 PE=3 SV=1
          Length = 2201

 Score = 1244 bits (3220), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 645/1404 (45%), Positives = 921/1404 (65%), Gaps = 48/1404 (3%)

Query: 293  EVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEE 352
            ++L  +  GD  E++++L   L  D   LI+ LL+NR+ +V   R   + +  + + +++
Sbjct: 253  DMLASVKSGD--ELQDELFELLGPDGLELIEKLLQNRVTIV--DRFLNSSNDHKLQALQD 308

Query: 353  EMMGLGPDLAAILDQLHATRATAK-ERQKNLEKSIREEARRL--KDESASDGGRDRRGLV 409
                +   L       +  + T + E++K L K  R E +R+  +++ A + G    GL+
Sbjct: 309  NCKKI---LGENAKPNYGCQVTIQSEQEKQLMKQYRREEKRIARREKKAGEDGEATEGLL 365

Query: 410  DRDADGGWLGQRQLL---------------DLDTLAF----------QQGGLFMANRKCD 444
              D     + + Q L               D++ + +           +   F+A  K  
Sbjct: 366  CFDPKELRIHREQALMNARNVPILSRQRDTDVEKIRYPHVYDSQAEAMRTSAFIAGAKMI 425

Query: 445  LPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVY 504
            LPEG QR  NK YEE+ +P  +  P+   EK + I ++ E  Q AFKGM +LNR+QS V+
Sbjct: 426  LPEGIQRENNKIYEEVKIPYTEPMPIGFEEKPVYIQDLDEIGQLAFKGMRRLNRIQSIVF 485

Query: 505  KSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564
            ++A ++ +N+L+CAPTGAGKTN+A+LT+L ++       G    + +KIVYVAPMKAL A
Sbjct: 486  ETAYNTNENMLICAPTGAGKTNIAMLTVLHEIR-QHFQQGVIKKNEFKIVYVAPMKALAA 544

Query: 565  EVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS-GDRTYTQL 623
            E+    S RL+   + V+EL+GD  L++ +I  TQ++VTTPEKWD++TRKS GD   +Q+
Sbjct: 545  EMTNYFSKRLEPLGIVVKELTGDMQLSKNEILRTQMLVTTPEKWDVVTRKSVGDVALSQI 604

Query: 624  VKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683
            VKLLI+DE+HLLH++RGPVLESIVART+RQ+E+T+  IR++GLSATLPNY DVA FL VN
Sbjct: 605  VKLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVN 664

Query: 684  LEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVHS 742
               GLF+FD  +RPVPL Q ++GI+    +Q+   M+++CYE V+  V   HQV++FVH+
Sbjct: 665  PCIGLFFFDGRFRPVPLGQTFLGIKSANKVQQLNNMDEVCYESVLKQVKAGHQVMVFVHA 724

Query: 743  RKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA 802
            R  T +TA ++ + A  N  +  FL          +      ++  +++L P GF+IHHA
Sbjct: 725  RNATVRTAMSLIERAKNNGQICYFLPTQGPEYGHAEKQVQKSRNRQVRELFPDGFSIHHA 784

Query: 803  GMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPL 862
            GM R DR LVE LF +GH++VLV TATLAWGVNLPAH VIIKGTQIY  ++G++ +L  L
Sbjct: 785  GMLRQDRNLVESLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGIL 844

Query: 863  DIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVL 922
            D+MQ+ GRAGRPQ+D +GEGIIIT H +L +YLSL+ QQ PIESQF+  LAD LNAEI L
Sbjct: 845  DVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQQNPIESQFLESLADNLNAEIAL 904

Query: 923  GTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRN 982
            GTV N +EA  WI YTYLY+RM  NP +YG++ +  + D TL + R  LV      LD+ 
Sbjct: 905  GTVTNVEEAVKWISYTYLYVRMRANPLVYGISHKAYQIDPTLAKHREQLVIEVGRKLDKA 964

Query: 983  NLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYV 1042
             +++++ ++GYF  TDLGR AS+YYI + TI T+NE       + ++  + S +EEF  +
Sbjct: 965  RMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNELFDAHKTESDIFAIVSKAEEFDQI 1024

Query: 1043 TVRQDEKMELAKLLDR-VPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQ 1101
             VR++E  EL  LL     +     +E    KIN+LLQ YIS+ +++  SL SD  ++ Q
Sbjct: 1025 KVREEEIEELDTLLSNFCELSAPGGVENSYGKINILLQTYISRGEVDSFSLISDSAYVAQ 1084

Query: 1102 SAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKK 1161
            +A R++RALFEI L++ W  +  + LNLSK++ KR+W   +PLRQF+ +P  IL +LE+K
Sbjct: 1085 NAARIVRALFEIALRKRWPAMTYRLLNLSKVIDKRLWGWTSPLRQFSVLPPHILTRLEEK 1144

Query: 1162 DFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITP 1221
            +   ++  D+   E+G ++    +G  + + VHQ P + + A +QPITRTVL+V L+I+P
Sbjct: 1145 NLTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSVTMEASIQPITRTVLRVTLSISP 1204

Query: 1222 DFLWDDKVHGYV-EPFWVIVEDNDGEYILHHEYFM-LKKQYI-EEDHSLNFTVPIYEPLP 1278
            DF W+D+VHG V EP+W+ VED   ++I H EYF+ LKKQ I +E   L FT+PI+EPLP
Sbjct: 1205 DFSWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLVLKKQVISKEAQLLVFTIPIFEPLP 1264

Query: 1279 PQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQG 1338
             QY+IR VSD+WLG++ V  ++F+HLILPE++PP TELLDLQPLPVTAL    YEALY  
Sbjct: 1265 SQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPLPVTALGCEAYEALY-N 1323

Query: 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP 1398
            F HFNP+QTQ+F  LY+TD NVL+ APTGSGKT+ +E AI R   K   +   +AVYIAP
Sbjct: 1324 FSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKYPTS---KAVYIAP 1380

Query: 1399 LEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQ 1458
            L+AL +ER  DW+++  + LG +V+ELTG+   D+K + K  +I++TPEKWD +SR W+ 
Sbjct: 1381 LKALVRERMDDWKVRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQN 1440

Query: 1459 RKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLG 1518
            R YV+QV++ IIDE+HL+G + GPVLEVIVSR  +I+S  E  +RIV LST+LANA+DL 
Sbjct: 1441 RNYVKQVTILIIDEIHLLGEERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLA 1500

Query: 1519 EWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPAL 1578
            +W+     GLFNF P VRPVPLE+HIQG    ++  RM +M KPTF AI  H+   KP L
Sbjct: 1501 DWLNIRQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPTFQAIRSHSP-AKPVL 1559

Query: 1579 VFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGY 1638
            +FV SR+  RLTA++L+ + + + D K  +L     E+E  I  I++  LK TL  G+G 
Sbjct: 1560 IFVSSRRQTRLTALELIAFLATEEDPKQ-WLNMDEREMENIIGTIRDSNLKLTLAFGIGM 1618

Query: 1639 LHEGLNKTDQEVVSALFEAGKIKI 1662
             H GL++ D++ V  LF   KI++
Sbjct: 1619 HHAGLHERDRKTVEELFVNCKIQV 1642



 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 244/700 (34%), Positives = 382/700 (54%), Gaps = 31/700 (4%)

Query: 472  PNEKLIKISEMPEWA-----QPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTN 526
            P+ +L+ +  +P  A       A    +  N VQ++++ +   +  N+LL APTG+GKT 
Sbjct: 1298 PHTELLDLQPLPVTALGCEAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTV 1357

Query: 527  VAVLTILQQLALNRNDDGSFN-HSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVREL 584
             A L I +           FN +   K VY+AP+KALV E + +   R++     KV EL
Sbjct: 1358 AAELAIFR----------VFNKYPTSKAVYIAPLKALVRERMDDWKVRIEEKLGKKVIEL 1407

Query: 585  SGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLE 644
            +GD T   + I +  +IVTTPEKWD ++R   +R Y + V +LIIDEIHLL + RGPVLE
Sbjct: 1408 TGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRNYVKQVTILIIDEIHLLGEERGPVLE 1467

Query: 645  SIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQY 704
             IV+RT      T++ +R+VGLS  L N  D+A +L +  + GLF F  S RPVPL    
Sbjct: 1468 VIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNIR-QMGLFNFRPSVRPVPLEVHI 1526

Query: 705  IGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTA-RAIRDTALENDTL 763
             G   +    R   MN   ++ + + +    VLIFV SR++T  TA   I   A E D  
Sbjct: 1527 QGFPGQHYCPRMASMNKPTFQAIRSHSPAKPVLIFVSSRRQTRLTALELIAFLATEEDP- 1585

Query: 764  GRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQV 823
             ++L  D   RE +++    ++ ++LK  L +G  +HHAG+   DR+ VE+LF +  +QV
Sbjct: 1586 KQWLNMDE--RE-MENIIGTIRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKIQV 1642

Query: 824  LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883
            L++T+TLAWGVN PAH VIIKGT+ Y+ +   + +    D++QM+GRAGRPQ+D  G+ +
Sbjct: 1643 LIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAV 1702

Query: 884  IITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIR 943
            I+    +  +Y   + +  P+ES  +  L+D LNAEI  GT+ + ++A ++I +TY + R
Sbjct: 1703 ILVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDAMDYITWTYFFRR 1762

Query: 944  MLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIA 1003
            ++ NP+ Y L+   +  D ++ +  ++LV  +   L+ +  ++    +   +    GRIA
Sbjct: 1763 LIMNPSYYNLSD--VSHD-SVNKFLSNLVEKSLVELEHSYCIEIGEDNRSIEPLTYGRIA 1819

Query: 1004 SYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDE---KMELAKLLDRVP 1060
            SYYY+ H T+  + E LKP  G  EL  + S +EE+  + VR +E     ELAK L    
Sbjct: 1820 SYYYLKHQTVKMFKERLKPECGTEELLSILSDAEEYTDLPVRHNEDHMNSELAKCLPLES 1879

Query: 1061 IPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWA 1120
             P   S + P  K ++LLQA++S+  L      +D   +   A R+ +A+ ++   +GW 
Sbjct: 1880 NP--HSFDSPHTKAHLLLQAHLSRTMLPCPDYDTDTKTVLDQALRVCQAMLDVAAHQGWL 1937

Query: 1121 QLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEK 1160
                   +L +MV +  W   + L     I N  L    K
Sbjct: 1938 VTVLNITSLVQMVIQGRWLKDSSLLTIPHIENHHLHIFRK 1977


>sp|Q8N3C0|ASCC3_HUMAN Activating signal cointegrator 1 complex subunit 3 OS=Homo sapiens
            GN=ASCC3 PE=1 SV=3
          Length = 2202

 Score = 1229 bits (3181), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 637/1405 (45%), Positives = 913/1405 (64%), Gaps = 50/1405 (3%)

Query: 293  EVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEE 352
            ++L  +  GD  E++++L   L  +   LI+ LL+NR+ +V   R   + +    + +++
Sbjct: 253  DMLASIKSGD--ELQDELFELLGPEGLELIEKLLQNRITIV--DRFLNSSNDHRFQALQD 308

Query: 353  EMMGLGPDLAAILDQLHATRATAK-ERQKNLEKSIREEARRL--KDESASDGGRDRRGLV 409
                +   L       +  + T + E++K L K  R E +R+  +++ A +      GL+
Sbjct: 309  NCKKI---LGENAKPNYGCQVTIQSEQEKQLMKQYRREEKRIARREKKAGEDLEVSEGLM 365

Query: 410  --------------------------DRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKC 443
                                       RDAD   +    + D    A +    F+A  K 
Sbjct: 366  CFDPKELRIQREQALLNARSVPILSRQRDADVEKIHYPHVYDSQAEAMKTSA-FIAGAKM 424

Query: 444  DLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRV 503
             LPEG QR  NK YEE+ +P  +  PL   EK + I ++ E  Q AFKGM +LNR+QS V
Sbjct: 425  ILPEGIQRENNKLYEEVRIPYSEPMPLSFEEKPVYIQDLDEIGQLAFKGMKRLNRIQSIV 484

Query: 504  YKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563
            +++A ++ +N+L+CAPTGAGKTN+A+LT+L ++       G    + +KIVYVAPMKAL 
Sbjct: 485  FETAYNTNENMLICAPTGAGKTNIAMLTVLHEIR-QHFQQGVIKKNEFKIVYVAPMKALA 543

Query: 564  AEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS-GDRTYTQ 622
            AE+    S RL+   + V+EL+GD  L++ +I  TQ++VTTPEKWD++TRKS GD   +Q
Sbjct: 544  AEMTDYFSRRLEPLGIIVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQ 603

Query: 623  LVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV 682
            +V+LLI+DE+HLLH++RGPVLESIVART+RQ+E+T+  IR++GLSATLPNY DVA FL V
Sbjct: 604  IVRLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHV 663

Query: 683  NLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVH 741
            N   GLF+FD  +RPVPL Q ++GI+    +Q+   M+++CYE V+  V   HQV++FVH
Sbjct: 664  NPYIGLFFFDGRFRPVPLGQTFLGIKCANKMQQLNNMDEVCYENVLKQVKAGHQVMVFVH 723

Query: 742  SRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHH 801
            +R  T +TA ++ + A     +  F         + +      ++  +++L P GF+IHH
Sbjct: 724  ARNATVRTAMSLIERAKNCGHIPFFFPTQGHDYVLAEKQVQRSRNKQVRELFPDGFSIHH 783

Query: 802  AGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSP 861
            AGM R DR LVE+LF +GH++VLV TATLAWGVNLPAH VIIKGTQIY  ++G++ +L  
Sbjct: 784  AGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGI 843

Query: 862  LDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIV 921
            LD+MQ+ GRAGRPQ+D +GEGIIIT H +L +YL+L+ Q+ PIESQF+  LAD LNAEI 
Sbjct: 844  LDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLTLLTQRNPIESQFLESLADNLNAEIA 903

Query: 922  LGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDR 981
            LGTV N +EA  WI YTYLY+RM  NP  YG++ +  + D TL + R  LV      LD+
Sbjct: 904  LGTVTNVEEAVKWISYTYLYVRMRANPLAYGISHKAYQIDPTLRKHREQLVIEVGRKLDK 963

Query: 982  NNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKY 1041
              +++++ ++GYF  TDLGR AS+YYI + TI T+NE       + ++  + S +EEF  
Sbjct: 964  AQMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNELFDAHKTEGDIFAIVSKAEEFDQ 1023

Query: 1042 VTVRQDEKMELAKLLDR-VPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFIT 1100
            + VR++E  EL  LL     +     +E    KIN+LLQ YIS+ +++  SL SD  ++ 
Sbjct: 1024 IKVREEEIEELDTLLSNFCELSTPGGVENSYGKINILLQTYISRGEMDSFSLISDSAYVA 1083

Query: 1101 QSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEK 1160
            Q+A R++RALFEI L++ W  +  + LNLSK++ KR+W   +PLRQF+ +P  IL +LE+
Sbjct: 1084 QNAARIVRALFEIALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQFSILPPHILTRLEE 1143

Query: 1161 KDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTIT 1220
            K    ++  D+   E+G ++    +G  + + VHQ P +++ A +QPITRTVL+V L+I 
Sbjct: 1144 KKLTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSVMMEASIQPITRTVLRVTLSIY 1203

Query: 1221 PDFLWDDKVHGYV-EPFWVIVEDNDGEYILHHEYFM-LKKQYI-EEDHSLNFTVPIYEPL 1277
             DF W+D+VHG V EP+W+ VED   ++I H EYF+ LKKQ I +E   L FT+PI+EPL
Sbjct: 1204 ADFTWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLALKKQVISKEAQLLVFTIPIFEPL 1263

Query: 1278 PPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQ 1337
            P QY+IR VSD+WLG++ V  ++F+HLILPE++PP TELLDLQPLP+TAL    YEALY 
Sbjct: 1264 PSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPLPITALGCKAYEALY- 1322

Query: 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397
             F HFNP+QTQ+F  LY+TD NVL+ APTGSGKT+ +E AI R   K   +   +AVYIA
Sbjct: 1323 NFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKYPTS---KAVYIA 1379

Query: 1398 PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWK 1457
            PL+AL +ER  DW+++  + LG +V+ELTG+   D+K + K  +I++TPEKWD +SR W+
Sbjct: 1380 PLKALVRERMDDWKVRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQ 1439

Query: 1458 QRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDL 1517
             R YVQQV++ IIDE+HL+G + GPVLEVIVSR  +I+S  E  +RIV LST+LANA+DL
Sbjct: 1440 NRNYVQQVTILIIDEIHLLGEERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDL 1499

Query: 1518 GEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPA 1577
             +W+     GLFNF P VRPVPLE+HIQG    ++  RM +M KP F AI  H+   KP 
Sbjct: 1500 ADWLNIKQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPAFQAIRSHSP-AKPV 1558

Query: 1578 LVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637
            L+FV SR+  RLTA++L+ + + + D K  +L     E+E  I  +++  LK TL  G+G
Sbjct: 1559 LIFVSSRRQTRLTALELIAFLATEEDPKQ-WLNMDEREMENIIATVRDSNLKLTLAFGIG 1617

Query: 1638 YLHEGLNKTDQEVVSALFEAGKIKI 1662
              H GL++ D++ V  LF   K+++
Sbjct: 1618 MHHAGLHERDRKTVEELFVNCKVQV 1642



 Score =  381 bits (979), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 239/679 (35%), Positives = 372/679 (54%), Gaps = 22/679 (3%)

Query: 486  AQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGS 545
            A  A    +  N VQ++++ +   +  N+LL APTG+GKT  A L I +           
Sbjct: 1317 AYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFR----------V 1366

Query: 546  FN-HSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVRELSGDQTLTRQQIEETQIIVT 603
            FN +   K VY+AP+KALV E + +   R++     KV EL+GD T   + I +  +IVT
Sbjct: 1367 FNKYPTSKAVYIAPLKALVRERMDDWKVRIEEKLGKKVIELTGDVTPDMKSIAKADLIVT 1426

Query: 604  TPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRL 663
            TPEKWD ++R   +R Y Q V +LIIDEIHLL + RGPVLE IV+RT      T++ +R+
Sbjct: 1427 TPEKWDGVSRSWQNRNYVQQVTILIIDEIHLLGEERGPVLEVIVSRTNFISSHTEKPVRI 1486

Query: 664  VGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLC 723
            VGLS  L N  D+A +L +  + GLF F  S RPVPL     G   +    R   MN   
Sbjct: 1487 VGLSTALANARDLADWLNIK-QMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPA 1545

Query: 724  YEKVVAVAGKHQVLIFVHSRKETAKTA-RAIRDTALENDTLGRFLKEDSVSREILQSHTD 782
            ++ + + +    VLIFV SR++T  TA   I   A E D   ++L  D   RE +++   
Sbjct: 1546 FQAIRSHSPAKPVLIFVSSRRQTRLTALELIAFLATEEDP-KQWLNMDE--RE-MENIIA 1601

Query: 783  MVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVI 842
             V+ ++LK  L +G  +HHAG+   DR+ VE+LF +  VQVL++T+TLAWGVN PAH VI
Sbjct: 1602 TVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVI 1661

Query: 843  IKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQL 902
            IKGT+ Y+ +   + +    D++QM+GRAGRPQ+D  G+ +I+    +  +Y   + +  
Sbjct: 1662 IKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPF 1721

Query: 903  PIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDI 962
            P+ES  +  L+D LNAEI  GT+ + ++A ++I +TY + R++ NP+ Y L    +  D 
Sbjct: 1722 PVESSLLGVLSDHLNAEIAGGTITSKQDALDYITWTYFFRRLIMNPSYYNLGD--VSHD- 1778

Query: 963  TLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKP 1022
            ++ +  + L+  +   L+ +  ++    +   +    GRIASYYY+ H T+  + + LKP
Sbjct: 1779 SVNKFLSHLIEKSLIELELSYCIEIGEDNRSIEPLTYGRIASYYYLKHQTVKMFKDRLKP 1838

Query: 1023 TMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVK-ESLEEPSAKINVLLQAY 1081
                 EL  + S +EE+  + VR +E    ++L   +PI     S + P  K ++LLQA+
Sbjct: 1839 ECSTEELLSILSDAEEYTDLPVRHNEDHMNSELAKCLPIESNPHSFDSPHTKAHLLLQAH 1898

Query: 1082 ISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQ 1141
            +S+  L      +D   +   A R+ +A+ ++   +GW        NL +MV +  W   
Sbjct: 1899 LSRAMLPCPDYDTDTKTVLDQALRVCQAMLDVAANQGWLVTVLNITNLIQMVIQGRWLKD 1958

Query: 1142 TPLRQFNGIPNEILMKLEK 1160
            + L     I N  L   +K
Sbjct: 1959 SSLLTLPNIENHHLHLFKK 1977


>sp|E9PZJ8|ASCC3_MOUSE Activating signal cointegrator 1 complex subunit 3 OS=Mus musculus
            GN=Ascc3 PE=2 SV=1
          Length = 2198

 Score = 1224 bits (3167), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 631/1393 (45%), Positives = 915/1393 (65%), Gaps = 47/1393 (3%)

Query: 305  EVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAI 364
            E++++L   L  +   LI+ LL+NR+ +V   R   +    + + +++    +   L   
Sbjct: 263  ELQDELFELLGPEGLDLIEKLLQNRITIV--DRFLNSSSDHKFQVLQDSCKKI---LGEN 317

Query: 365  LDQLHATRATAK-ERQKNLEKSIREEARRL---KDESASDGGRDRRGLVDRDA------- 413
                +  + T + E++K L K  R E +R+   + ++  DG     G++  D        
Sbjct: 318  SKPNYGCQVTIQSEQEKQLMKQYRREEKRIARREKKAGEDGEVSGEGVLPFDPKELRIQR 377

Query: 414  --------DGGWLGQRQLLDLDTLAF----------QQGGLFMANRKCDLPEGSQRFTNK 455
                    +   LG+++ ++ + + +          ++   F+A  K  LPEG QR   K
Sbjct: 378  EHALLNARNAPILGRQRDVEFEKIRYPHVYDSQAQARETSAFIAGAKMILPEGIQRENTK 437

Query: 456  GYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNIL 515
             YEE+ +P  +  P+   EK + I ++ E  Q AFKGM +LNR+QS V+++A ++ +N+L
Sbjct: 438  LYEEVRIPYGEPMPVGFEEKPVYIKDLDEVGQLAFKGMKRLNRIQSIVFETAYNTNENML 497

Query: 516  LCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ 575
            +CAPTGAGKTN+A+LTIL ++  + +  G    + +KIVYVAPMKAL AE+    S RL+
Sbjct: 498  ICAPTGAGKTNIAMLTILHEIRQHFHQ-GVIKKNEFKIVYVAPMKALAAEMTNYFSKRLE 556

Query: 576  MYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS-GDRTYTQLVKLLIIDEIHL 634
               + V+EL+GD  L++ +I  TQ++VTTPEKWD++TRKS GD   +Q+VKLLI+DE+HL
Sbjct: 557  PLGIVVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKLLILDEVHL 616

Query: 635  LHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNS 694
            LH++RGPVLESIVART+RQ+E+T+  IR++GLSATLPNY DVA FL VN   GLFYFD  
Sbjct: 617  LHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFYFDGR 676

Query: 695  YRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVHSRKETAKTARAI 753
            +RPVPL Q ++GI+    +Q+   M+++CYE V+  V   HQV++FVH+R  T +TA ++
Sbjct: 677  FRPVPLGQTFLGIKSTNKMQQLNNMDEVCYESVLKQVKAGHQVMVFVHARNATVRTAMSL 736

Query: 754  RDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVE 813
             + A  +  +  FL  +              ++  +++L   GF+IHHAGM R DR LVE
Sbjct: 737  IERAKNSGQISCFLPTEGPEYGHALKQVQKSRNKQVRELFSDGFSIHHAGMLRQDRNLVE 796

Query: 814  DLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873
            +LF +GH++VLV TATLAWGVNLPAH V+IKGTQIY  ++G++ +L  LD+MQ+ GRAGR
Sbjct: 797  NLFSNGHIKVLVCTATLAWGVNLPAHAVVIKGTQIYAAKRGSFVDLGILDVMQIFGRAGR 856

Query: 874  PQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACN 933
            PQ+D +GEGIIIT H +L +YLSL+ QQ PIESQF+  LAD LNAEI LGTV N +EA  
Sbjct: 857  PQFDKFGEGIIITTHDKLSHYLSLLTQQNPIESQFLESLADNLNAEIALGTVTNVEEAVR 916

Query: 934  WIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGY 993
            W+ YTYLY+RM  NP  YG++ +  + D TL + R  L+      LD+  +++++ ++GY
Sbjct: 917  WMSYTYLYVRMRANPLAYGISHKAYQIDPTLRKHREQLLIEVGQKLDKAKMIRFEERTGY 976

Query: 994  FQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELA 1053
            F  TDLGR AS++YI + TI T+NE       + ++  + S +EEF  + VR++E  EL 
Sbjct: 977  FSSTDLGRTASHFYIKYNTIETFNELFDAHKTEGDIFAIVSKAEEFDQIKVREEEIEELD 1036

Query: 1054 KLLDR-VPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFE 1112
             LL+    +     +E    KIN+LLQ YIS+ +++  SL SD  ++ Q+A R++RALFE
Sbjct: 1037 ALLNNFCELSAPGGVENSYGKINILLQTYISRGEMDSFSLISDSAYVAQNAARIVRALFE 1096

Query: 1113 IVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLS 1172
            I L++ W  +  + LNLSK++ KR+W   +PLRQF+ +P  IL +LE+K+   ++  D+ 
Sbjct: 1097 IALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQFSVLPPHILTRLEEKNLTVDKLKDMR 1156

Query: 1173 PQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGY 1232
              E+G ++    +G  + + VHQ P + + A +QPITRTVL+V L I PDF W+D+VHG 
Sbjct: 1157 KDEIGHILHHVNIGLKVKQCVHQIPSVTMEASIQPITRTVLRVSLNIHPDFSWNDQVHGT 1216

Query: 1233 V-EPFWVIVEDNDGEYILHHEYFM-LKKQYI-EEDHSLNFTVPIYEPLPPQYFIRVVSDK 1289
            V EP+W+ VED   ++I H EYF+ LKKQ I +E   L FT+PI+EPLP QY+IR VSD+
Sbjct: 1217 VGEPWWIWVEDPTNDHIYHSEYFLALKKQVINKEAQLLVFTIPIFEPLPSQYYIRAVSDR 1276

Query: 1290 WLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQV 1349
            WLG++ V  ++F+HLILPE++PP TELLDLQPLP+TAL    YEALY  F HFNP+QTQ+
Sbjct: 1277 WLGAEAVCIINFQHLILPERHPPHTELLDLQPLPITALGCKAYEALY-NFSHFNPVQTQI 1335

Query: 1350 FTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409
            F  LY+TD NVL+ APTGSGKT+ +E AI R   K   +   +AVYIAPL+AL +ER  D
Sbjct: 1336 FHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKYPTS---KAVYIAPLKALVRERMDD 1392

Query: 1410 WEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFI 1469
            W+I+  + LG +V+ELTG+   D+K + K  +I++TPEKWD +SR W+ R YVQQV++ I
Sbjct: 1393 WKIRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRSYVQQVNILI 1452

Query: 1470 IDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLF 1529
            IDE+HL+G + GPVLEVIVSR  +I+S  E  +RIV LST+LANA+DL +W+     GLF
Sbjct: 1453 IDEIHLLGEERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNIKQMGLF 1512

Query: 1530 NFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRL 1589
            NF P VRPVPLE+HIQG    ++  RM +M KP F AI  H+   KP L+FV SR+  RL
Sbjct: 1513 NFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPAFQAIRSHSP-AKPVLIFVSSRRQTRL 1571

Query: 1590 TAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQE 1649
            TA++L+ + + + D K  +L    +E++  I  +++  LK TL  G+G  H GL++ D++
Sbjct: 1572 TALELIAFLATEEDPKQ-WLNMDEQEMDNIIGTVRDSNLKLTLAFGIGMHHAGLHERDRK 1630

Query: 1650 VVSALFEAGKIKI 1662
             V  LF   K+++
Sbjct: 1631 TVEELFVNCKVQV 1643



 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 231/657 (35%), Positives = 366/657 (55%), Gaps = 22/657 (3%)

Query: 486  AQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGS 545
            A  A    +  N VQ++++ +   +  N+LL APTG+GKT  A L I +           
Sbjct: 1318 AYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFR----------V 1367

Query: 546  FN-HSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVRELSGDQTLTRQQIEETQIIVT 603
            FN +   K VY+AP+KALV E + +   R++     KV EL+GD T   + I +  +IVT
Sbjct: 1368 FNKYPTSKAVYIAPLKALVRERMDDWKIRIEEKLGKKVIELTGDVTPDMKSIAKADLIVT 1427

Query: 604  TPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRL 663
            TPEKWD ++R   +R+Y Q V +LIIDEIHLL + RGPVLE IV+RT      T++ +R+
Sbjct: 1428 TPEKWDGVSRSWQNRSYVQQVNILIIDEIHLLGEERGPVLEVIVSRTNFISSHTEKPVRI 1487

Query: 664  VGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLC 723
            VGLS  L N  D+A +L +  + GLF F  S RPVPL     G   +    R   MN   
Sbjct: 1488 VGLSTALANARDLADWLNIK-QMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPA 1546

Query: 724  YEKVVAVAGKHQVLIFVHSRKETAKTA-RAIRDTALENDTLGRFLKEDSVSREILQSHTD 782
            ++ + + +    VLIFV SR++T  TA   I   A E D   ++L  D    + + +   
Sbjct: 1547 FQAIRSHSPAKPVLIFVSSRRQTRLTALELIAFLATEEDP-KQWLNMD---EQEMDNIIG 1602

Query: 783  MVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVI 842
             V+ ++LK  L +G  +HHAG+   DR+ VE+LF +  VQVL++T+TLAWGVN PAH VI
Sbjct: 1603 TVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVI 1662

Query: 843  IKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQL 902
            IKGT+ Y+ +   + +    D++QM+GRAGRPQ+D  G+ +I+    +  +Y   + +  
Sbjct: 1663 IKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPF 1722

Query: 903  PIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDI 962
            P+ES  +  L+D LNAEI  GT+ + ++A ++I +TY + R++ NP+ Y L    + +D 
Sbjct: 1723 PVESSLLGVLSDHLNAEIAGGTITSKQDAMDYITWTYFFRRLIMNPSYYSLGD--VSQD- 1779

Query: 963  TLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKP 1022
            ++ +  + L+  +   L+ ++ ++    +   +    GRIASYYY+ H T+  + + LKP
Sbjct: 1780 SINKFLSHLIGQSLVELELSHCIEVGEDNRTIEPLTCGRIASYYYLKHKTVKMFKDRLKP 1839

Query: 1023 TMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVK-ESLEEPSAKINVLLQAY 1081
                 EL  + S +EE+  + VR +E     +L   +PI +   S + P  K ++LLQA+
Sbjct: 1840 ECSTEELLSILSDAEEYTDLPVRHNEDHTNNELAKCLPIELNPHSFDSPHTKAHLLLQAH 1899

Query: 1082 ISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMW 1138
            +S+  L      +D   +   A R+ +A+ ++   +GW        +L +MV +  W
Sbjct: 1900 LSRAMLPCPDYDTDTKTVLDQALRVCQAMLDVAASQGWLVTVLNITHLIQMVIQGRW 1956


>sp|F1LPQ2|ASCC3_RAT Activating signal cointegrator 1 complex subunit 3 OS=Rattus
            norvegicus GN=Ascc3 PE=2 SV=1
          Length = 2197

 Score = 1207 bits (3123), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 601/1239 (48%), Positives = 845/1239 (68%), Gaps = 14/1239 (1%)

Query: 430  AFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPA 489
            A ++   F+A  K  LPEG QR   K YEE+ +P  +  P+   EK + I ++ E  Q A
Sbjct: 412  AARETSAFIAGAKMILPEGIQRENTKLYEEVRIPYSEPMPVGFEEKPVYIQDLDEVGQLA 471

Query: 490  FKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHS 549
            FKGM +LNR+QS V+ +A ++ +N+L+CAPTGAGKTN+A+LT+L ++  + +  G    +
Sbjct: 472  FKGMKRLNRIQSIVFDTAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHFHQ-GVLKKN 530

Query: 550  NYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWD 609
             +KIVYVAPMKAL AE+    S RL+   + V+EL+GD  L++ +I  TQ++VTTPEKWD
Sbjct: 531  EFKIVYVAPMKALAAEMTNYFSKRLEPLGIVVKELTGDMQLSKSEILRTQMLVTTPEKWD 590

Query: 610  IITRKS-GDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSA 668
            ++TRKS GD   +Q+VKLLI+DE+HLLH++RGPVLESIVART+RQ+E+T+  IR++GLSA
Sbjct: 591  VVTRKSVGDVALSQIVKLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSA 650

Query: 669  TLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVV 728
            TLPNY DVA FL VN   GLFYFD  +RPVPL Q ++GI+    +Q+   M+++CYE V+
Sbjct: 651  TLPNYLDVATFLHVNPYIGLFYFDGRFRPVPLGQTFLGIKSANKMQQLNNMDEVCYESVL 710

Query: 729  A-VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSN 787
              V   HQV++FVH+R  T +TA ++ + A  +  +  FL                 ++ 
Sbjct: 711  KQVKAGHQVMVFVHARNATVRTAMSLIERAKNSGQISCFLPTQGPEYGHALKQVQKSRNK 770

Query: 788  DLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQ 847
             +++L   GF+IHHAGM R DR LVE+LF +GH++VLV TATLAWGVNLPAH VIIKGTQ
Sbjct: 771  QVRELFSDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQ 830

Query: 848  IYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQ 907
            IY  ++G++ +L  LD+MQ+ GRAGRPQ+D +GEGIIIT H +L +YLSL+ QQ PIESQ
Sbjct: 831  IYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQQNPIESQ 890

Query: 908  FVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGER 967
            F+  LAD LNAEI LGTV N +EA  W+ YTYLY+RM  NP  YG++ +  + D TL + 
Sbjct: 891  FLESLADNLNAEIALGTVTNVEEAVKWMSYTYLYVRMRANPLAYGISHKAYQMDPTLRKH 950

Query: 968  RADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDI 1027
            R  L+      LD+  +++++ ++GYF  TDLGR AS+YYI + TI T+NE       + 
Sbjct: 951  REQLLIEVGQKLDKARMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNELFDAHKTEG 1010

Query: 1028 ELCRLFSLSEEFKYVTVRQDEKMELAKLLDR-VPIPVKESLEEPSAKINVLLQAYISQLK 1086
            ++  + S +EEF  + VR++E  EL  LL+    +     +E    KIN+LLQ YIS+ +
Sbjct: 1011 DIFAIVSKAEEFDQIKVREEEIEELDALLNNFCELSAPGGVENSYGKINILLQTYISRGE 1070

Query: 1087 LEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQ 1146
            ++  SL SD  ++ Q+A R++RALFEI L++ W  +  + LNLSK++ KR+W   +PLRQ
Sbjct: 1071 MDSFSLISDSAYVAQNAARIVRALFEIALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQ 1130

Query: 1147 FNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQ 1206
            F+ +P  IL +LE+K+   ++  D+   E+G ++    +G  + + VHQ P + + A +Q
Sbjct: 1131 FSVLPPHILTRLEEKNLTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSVTMEASIQ 1190

Query: 1207 PITRTVLKVELTITPDFLWDDKVHGYV-EPFWVIVEDNDGEYILHHEYFM-LKKQYI-EE 1263
            PITRTVL+V L I PDF W+D+VHG V EP+W+ VED   ++I H EYF+ LKKQ I +E
Sbjct: 1191 PITRTVLRVSLNIYPDFSWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLALKKQVINKE 1250

Query: 1264 DHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLP 1323
               L FT+PI+EPLP QY+IR VSD+WLG++ V  ++F+HLILPE++PP TELLDLQPLP
Sbjct: 1251 AQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPLP 1310

Query: 1324 VTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQ 1383
            VTAL    YEALY  F HFNP+QTQ+F  LY+TD NVL+ APTGSGKT+ +E AI R   
Sbjct: 1311 VTALGCKAYEALY-NFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFN 1369

Query: 1384 KASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIII 1443
            K   +   +AVYIAPL+AL +ER  DW+I+  + LG +V+ELTG+   D+K + K  +I+
Sbjct: 1370 KYPTS---KAVYIAPLKALVRERMDDWKIRIEEKLGKKVIELTGDVTPDMKSIAKADLIV 1426

Query: 1444 STPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIR 1503
            +TPEKWD +SR W+ R YVQQV++ IIDE+HL+G + GPVLEVIVSR  +I+S  E  +R
Sbjct: 1427 TTPEKWDGVSRSWQNRSYVQQVNILIIDEIHLLGEERGPVLEVIVSRTNFISSHTEKPVR 1486

Query: 1504 IVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPT 1563
            IV LST+LANA+DL +W+     GLFNF P VRPVPLE+HIQG    ++  RM +M KP 
Sbjct: 1487 IVGLSTALANARDLADWLNIKQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPA 1546

Query: 1564 FTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNI 1623
            F     H   ++P L+ +P R    +T ++L+ + + + D K  +L    +E+E  I  +
Sbjct: 1547 FQESHTHCP-DRPCLL-LPERMLSSMTKLELIAFLATEEDPKQ-WLNMDEQEMENIIATV 1603

Query: 1624 QEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKI 1662
            ++  LK TL  G+G  H GL++ D++ V  LF   K+++
Sbjct: 1604 RDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQV 1642



 Score =  363 bits (932), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 226/675 (33%), Positives = 362/675 (53%), Gaps = 26/675 (3%)

Query: 472  PNEKLIKISEMPEWA-----QPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTN 526
            P+ +L+ +  +P  A       A    +  N VQ++++ +   +  N+LL APTG+GKT 
Sbjct: 1299 PHTELLDLQPLPVTALGCKAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTV 1358

Query: 527  VAVLTILQQLALNRNDDGSFN-HSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVREL 584
             A L I +           FN +   K VY+AP+KALV E + +   R++     KV EL
Sbjct: 1359 AAELAIFR----------VFNKYPTSKAVYIAPLKALVRERMDDWKIRIEEKLGKKVIEL 1408

Query: 585  SGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLE 644
            +GD T   + I +  +IVTTPEKWD ++R   +R+Y Q V +LIIDEIHLL + RGPVLE
Sbjct: 1409 TGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRSYVQQVNILIIDEIHLLGEERGPVLE 1468

Query: 645  SIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQY 704
             IV+RT      T++ +R+VGLS  L N  D+A +L +  + GLF F  S RPVPL    
Sbjct: 1469 VIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNIK-QMGLFNFRPSVRPVPLEVHI 1527

Query: 705  IGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLG 764
             G   +    R   MN   +++          L+       +      I   A E D   
Sbjct: 1528 QGFPGQHYCPRMASMNKPAFQESHTHCPDRPCLLLPERMLSSMTKLELIAFLATEEDP-K 1586

Query: 765  RFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVL 824
            ++L  D    E + +    V+ ++LK  L +G  +HHAG+   DR+ VE+LF +  VQVL
Sbjct: 1587 QWLNMDEQEMENIIA---TVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVL 1643

Query: 825  VSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGII 884
            ++T+TLAWGVN PAH VIIKGT+ Y+ +   + +    D++QM+GRAGRPQ+D  G+ +I
Sbjct: 1644 IATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVI 1703

Query: 885  ITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRM 944
            +    +  +Y   + +  P+ES  +  L+D LNAEI  GT+ + ++A ++I +TY + R+
Sbjct: 1704 LVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDALDYITWTYFFRRL 1763

Query: 945  LRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIAS 1004
            + NP+ Y L    + +D  + +  + L+  +   L+ ++ ++    +   +    GRIAS
Sbjct: 1764 IMNPSYYNLGD--VSQD-AINKFLSHLIGQSLVELELSHCIEVGEDNRSIEPLTCGRIAS 1820

Query: 1005 YYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVK 1064
            YYY+ H T+  + + LKP     EL  + S +EE+  + VR +E     +L   +PI + 
Sbjct: 1821 YYYLKHKTVKMFKDRLKPECSTEELLSILSDAEEYTDLPVRHNEDHTNNELAKCLPIELN 1880

Query: 1065 -ESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLA 1123
              S + P  K ++LLQA++S+  L      +D   +   A R+ +A+ ++   +GW    
Sbjct: 1881 PHSFDSPHTKAHLLLQAHLSRAMLPCPDYDTDTKTVLDQALRVCQAMLDVAASQGWLVTT 1940

Query: 1124 EKALNLSKMVTKRMW 1138
                +L +MV +  W
Sbjct: 1941 LNITHLIQMVIQGRW 1955


>sp|P32639|BRR2_YEAST Pre-mRNA-splicing helicase BRR2 OS=Saccharomyces cerevisiae (strain
            ATCC 204508 / S288c) GN=BRR2 PE=1 SV=2
          Length = 2163

 Score = 1177 bits (3046), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 681/1696 (40%), Positives = 1009/1696 (59%), Gaps = 100/1696 (5%)

Query: 18   YEYRANSSLVLTTDSRPRDTHE------PTGEPESLWGKIDPRSFGDRAFRGRPPELEE- 70
            Y Y   S+ VL  D R  +T +         +P+S+ G+I  +  G          L+E 
Sbjct: 17   YRYDEMSNKVLKVDKRFMNTSQNPQRDAEISQPKSMSGRISAKDMGQGLCNNINKGLKEN 76

Query: 71   -----KLKKSAKKKKERDPDADAAAASEGT--YQPKTKETRAAYEAMLSVIQQQLGGQ-P 122
                 K  KSA  KK +  +    ++S+    Y PK       YE +L  + + LG   P
Sbjct: 77   DVAVEKTGKSASLKKIQQHNTILNSSSDFRLHYYPKDPSNVETYEQILQWVTEVLGNDIP 136

Query: 123  LNIVSGAADEILAVLK----NDAVKNPDKKKEIEKLLN-PIPNHVFDQLVSIGKLITDYQ 177
             +++ G AD  +  LK    N+     ++K++I+  L   I +  F++LV + K ITDY+
Sbjct: 137  HDLIIGTADIFIRQLKENEENEDGNIEERKEKIQHELGINIDSLKFNELVKLMKNITDYE 196

Query: 178  DAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEE------------SDLDMVQEEDEE 225
               D +   A            VA+  ++   DEEE             +++  +++DEE
Sbjct: 197  THPDNSNKQA------------VAILADDEKSDEEEVTEMSNNANVLGGEINDNEDDDEE 244

Query: 226  EEEDVAEPNASGAMQMG-GGIDDD----DESGDANEGMSLNVQDIDAYWLQRKISQAFDQ 280
             + +  E N+    +     I++D     +S  +N   S+ +  ID ++LQRK+      
Sbjct: 245  YDYNDVEVNSKKKNKRALPNIENDIIKLSDSKTSNIE-SVPIYSIDEFFLQRKLRSELGY 303

Query: 281  QIDPQQCQKLAEEVLKILA--EGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRL 338
            + D    Q L+E++L  +   E +   +E KL+  L+F+  SL +F+L+NR  + W  RL
Sbjct: 304  K-DTSVIQDLSEKILNDIETLEHNPVALEQKLVDLLKFENISLAEFILKNRSTIFWGIRL 362

Query: 339  ARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESA 398
            A++ + E    IE+ M+  G +      +   T  + +E     ++    EA+R K  + 
Sbjct: 363  AKSTENEIPNLIEK-MVAKGLNDLVEQYKFRETTHSKRELDSGDDQPQSSEAKRTKFSNP 421

Query: 399  SDGGRDRRGLVDRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYE 458
            +                       ++DL+ + F +    M   K  LPEGS +     Y+
Sbjct: 422  AIP--------------------PVIDLEKIKFDESSKLMTVTKVSLPEGSFKRVKPQYD 461

Query: 459  EIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKG--MTQLNRVQSRVYKSALSSADNILL 516
            EIH+PA     +D   +L +I+ +P+W Q AF     T LN +QS+V+ +A     N+L+
Sbjct: 462  EIHIPAPSKPVID--YELKEITSLPDWCQEAFPSSETTSLNPIQSKVFHAAFEGDSNMLI 519

Query: 517  CAPTGAGKTNVAVLTILQQLALNRN-DDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ 575
            CAPTG+GKTN+A+LT+L+ L+ + N      N S +KIVY+AP+KALV E V     RL 
Sbjct: 520  CAPTGSGKTNIALLTVLKALSHHYNPKTKKLNLSAFKIVYIAPLKALVQEQVREFQRRLA 579

Query: 576  MYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635
               +KV EL+GD  L+R+QI+ETQ++V+TPEKWDI TR S +    +LV+LLIIDEIHLL
Sbjct: 580  FLGIKVAELTGDSRLSRKQIDETQVLVSTPEKWDITTRNSNNLAIVELVRLLIIDEIHLL 639

Query: 636  HDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSY 695
            HD+RGPVLESIVART    +  +E+ R++GLSATLPNYEDV  FLRV  E GLFYFD+S+
Sbjct: 640  HDDRGPVLESIVARTFWASKYGQEYPRIIGLSATLPNYEDVGRFLRVPKE-GLFYFDSSF 698

Query: 696  RPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVV-AVAGKHQVLIFVHSRKETAKTARAIR 754
            RP PLSQQ+ GI+ +  L++ + MND CYEKV+ ++   +Q+++FVHSRKET++TA  ++
Sbjct: 699  RPCPLSQQFCGIKERNSLKKLKAMNDACYEKVLESINEGNQIIVFVHSRKETSRTATWLK 758

Query: 755  DTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVED 814
            +   E +   +  K D+ S++IL++    V    L+ L+  G   HHAG+TR DR L ED
Sbjct: 759  NKFAEENITHKLTKNDAGSKQILKTEAANVLDPSLRKLIESGIGTHHAGLTRSDRSLSED 818

Query: 815  LFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRP 874
            LF DG +QVLV TATLAWGVNLPAHTVIIKGT +Y+PEKG+W +LSP D++QMLGRAGRP
Sbjct: 819  LFADGLLQVLVCTATLAWGVNLPAHTVIIKGTDVYSPEKGSWEQLSPQDVLQMLGRAGRP 878

Query: 875  QYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNW 934
            +YD++GEGIIIT  S ++YYLS++NQQLPIESQFVSKL D LNAE+V G ++   +A NW
Sbjct: 879  RYDTFGEGIIITDQSNVQYYLSVLNQQLPIESQFVSKLVDNLNAEVVAGNIKCRNDAVNW 938

Query: 935  IGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYF 994
            + YTYLY+RML +P LY + P++   D  L + R  LVH+A  IL    LV YD ++   
Sbjct: 939  LAYTYLYVRMLASPMLYKV-PDI-SSDGQLKKFRESLVHSALCILKEQELVLYDAENDVI 996

Query: 995  QVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAK 1054
            + TDLG IAS +YI+H ++  YN  L      I+L R+FS+SEEFKYV+VR +EK EL +
Sbjct: 997  EATDLGNIASSFYINHASMDVYNRELDEHTTQIDLFRIFSMSEEFKYVSVRYEEKRELKQ 1056

Query: 1055 LLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIV 1114
            LL++ PIP++E +++P AK+NVLLQ+Y SQLK EG +L SD+VFI Q+AGRLLRA+FEI 
Sbjct: 1057 LLEKAPIPIREDIDDPLAKVNVLLQSYFSQLKFEGFALNSDIVFIHQNAGRLLRAMFEIC 1116

Query: 1115 LKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDL-SP 1173
            LKRGW       LNL K  T +MW    PLRQF   P E++ +LE     W  Y  L +P
Sbjct: 1117 LKRGWGHPTRMLLNLCKSATTKMWPTNCPLRQFKTCPVEVIKRLEASTVPWGDYLQLETP 1176

Query: 1174 QELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYV 1233
             E+G  IR  K G+ ++  + +FPK+ +  + QPITR+V++  + I  D++WD  VHG +
Sbjct: 1177 AEVGRAIRSEKYGKQVYDLLKRFPKMSVTCNAQPITRSVMRFNIEIIADWIWDMNVHGSL 1236

Query: 1234 EPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYE----PLPPQYFIRVVSDK 1289
            EPF +++ED DG+ IL+++   +    +  + +L+FT  + +     LPP +F+ ++S+ 
Sbjct: 1237 EPFLLMLEDTDGDSILYYDVLFITPDIVGHEFTLSFTYELKQHNQNNLPPNFFLTLISEN 1296

Query: 1290 WLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQV 1349
            W  S+  +PVSF    LP+K+PPPT LL+   +  + L N  +  +++ FK FN IQ+QV
Sbjct: 1297 WWHSEFEIPVSFNGFKLPKKFPPPTPLLENISISTSELGNDDFSEVFE-FKTFNKIQSQV 1355

Query: 1350 FTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409
            F  LYN++D+V V +  G+GKT  +E A+L NH + ++    RAVYI P          D
Sbjct: 1356 FESLYNSNDSVFVGSGKGTGKTAMAELALL-NHWRQNKG---RAVYINPSGEKIDFLLSD 1411

Query: 1410 WEIKFGQGLGMRVV-ELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLF 1468
            W  +F    G +++ +L  + +++LKLL K  ++++TP +++ LSRRW+QRK +Q + L 
Sbjct: 1412 WNKRFSHLAGGKIINKLGNDPSLNLKLLAKSHVLLATPVQFELLSRRWRQRKNIQSLELM 1471

Query: 1469 IIDELHLIG-GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHG 1527
            I D+ H I  G  G V E ++SRM +IA+Q+E KIR V LS  LANA+D GEW G T   
Sbjct: 1472 IYDDAHEISQGVYGAVYETLISRMIFIATQLEKKIRFVCLSNCLANARDFGEWAGMTKSN 1531

Query: 1528 LFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYV 1587
            ++NF P  R  PLEI+IQ        +   +M +  F A    A N   + VF+PSRK  
Sbjct: 1532 IYNFSPSERIEPLEINIQSFKDVEHISFNFSMLQMAFEASAAAAGNRNSSSVFLPSRKDC 1591

Query: 1588 RLTAVDLMTYS-SMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKT 1646
               A   M +S +++ D     L    E++ P+I+ + +  L+A L+HGVG L++G+   
Sbjct: 1592 MEVASAFMKFSKAIEWD----MLNVEEEQIVPYIEKLTDGHLRAPLKHGVGILYKGMASN 1647

Query: 1647 DQEVVSALFEAGKIKI 1662
            D+ +V  L+E G + +
Sbjct: 1648 DERIVKRLYEYGAVSV 1663



 Score =  194 bits (494), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 178/706 (25%), Positives = 333/706 (47%), Gaps = 64/706 (9%)

Query: 496  LNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVY 555
             N++QS+V++S  +S D++ + +  G GKT +A L +L     N+           + VY
Sbjct: 1348 FNKIQSQVFESLYNSNDSVFVGSGKGTGKTAMAELALLNHWRQNKG----------RAVY 1397

Query: 556  VAPMKALVAEVVGNLSNRLQMY--DVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITR 613
            + P    +  ++ + + R         + +L  D +L  + + ++ +++ TP ++++++R
Sbjct: 1398 INPSGEKIDFLLSDWNKRFSHLAGGKIINKLGNDPSLNLKLLAKSHVLLATPVQFELLSR 1457

Query: 614  KSGDRTYTQLVKLLIIDEIHLLHDN-RGPVLESIVARTVRQIETTKEHIRLVGLSATLPN 672
            +   R   Q ++L+I D+ H +     G V E++++R +      ++ IR V LS  L N
Sbjct: 1458 RWRQRKNIQSLELMIYDDAHEISQGVYGAVYETLISRMIFIATQLEKKIRFVCLSNCLAN 1517

Query: 673  YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQR----FQLMNDLCYEKVV 728
              D   +  +  +  ++ F  S R  PL    I IQ  K ++     F ++         
Sbjct: 1518 ARDFGEWAGMT-KSNIYNFSPSERIEPLE---INIQSFKDVEHISFNFSMLQMAFEASAA 1573

Query: 729  AVAGKHQVLIFVHSRKETAKTARAIR--DTALENDTLGRFLKEDSVSREILQSHTDMVKS 786
            A   ++   +F+ SRK+  + A A      A+E D L       +V  E +  + + +  
Sbjct: 1574 AAGNRNSSSVFLPSRKDCMEVASAFMKFSKAIEWDML-------NVEEEQIVPYIEKLTD 1626

Query: 787  NDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGT 846
              L+  L +G  I + GM   D ++V+ L+  G V VL+ +   +         VII GT
Sbjct: 1627 GHLRAPLKHGVGILYKGMASNDERIVKRLYEYGAVSVLLISKDCS-AFACKTDEVIILGT 1685

Query: 847  QIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSY-GEGIIITGHSELRYYLSLMNQQLPIE 905
             +Y+  +  +   +  ++++M+G A     DS  G+ +I+T H+   YY   + + LP E
Sbjct: 1686 NLYDGAEHKYMPYTINELLEMVGLAS--GNDSMAGKVLILTSHNMKAYYKKFLIEPLPTE 1743

Query: 906  SQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGL---APEVLKEDI 962
            S     + D LN EI    +Q+ ++  +W  Y+Y Y R+  NP+ YG+   +P  +   +
Sbjct: 1744 SYLQYIIHDTLNNEIANSIIQSKQDCVDWFTYSYFYRRIHVNPSYYGVRDTSPHGISVFL 1803

Query: 963  TLGERRADLVHTAATILDRNNLVKYDR---------KSGYFQVTDL------GRIASYYY 1007
                  ++LV T    L  ++ ++ D            G  + T++      G IAS+Y 
Sbjct: 1804 ------SNLVETCLNDLVESSFIEIDDTEAEVTAEVNGGDDEATEIISTLSNGLIASHYG 1857

Query: 1008 ISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPI--PVKE 1065
            +S  TI ++   L  T     +  + S + EF+ V +R+ ++  L KL  R+P+  P   
Sbjct: 1858 VSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRALLVKLSKRLPLRFPEHT 1917

Query: 1066 SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEK 1125
            S    S K+ +LLQAY S+L+L  +   +D+  I +    L+  + +I+   G+   A  
Sbjct: 1918 SSGSVSFKVFLLLQAYFSRLELP-VDFQNDLKDILEKVVPLINVVVDILSANGYLN-ATT 1975

Query: 1126 ALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDL 1171
            A++L++M+ + +W V  PLRQ     N+IL K   K+   E  YD+
Sbjct: 1976 AMDLAQMLIQGVWDVDNPLRQIPHFNNKILEKC--KEINVETVYDI 2019


>sp|Q54G57|HELC1_DICDI Activating signal cointegrator 1 complex subunit 3 OS=Dictyostelium
            discoideum GN=ascc3 PE=3 SV=1
          Length = 2195

 Score = 1167 bits (3019), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 581/1229 (47%), Positives = 834/1229 (67%), Gaps = 23/1229 (1%)

Query: 442  KCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISE-MPEWAQPAFKGMTQLNRVQ 500
            K  LP+G+ R     + E+ VP    KP   NEKLI+I E + E ++ AF  + +LNR+Q
Sbjct: 428  KIALPKGTVRTEKTTHTEVMVPYSLAKPFADNEKLIEIGESIAEISRAAFGSIKKLNRIQ 487

Query: 501  SRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMK 560
            SRV++SA  S +NIL+ APTGAGKTN+A+LTIL ++  N N  G  +  N+KI+Y+AP+K
Sbjct: 488  SRVFESAYKSNENILISAPTGAGKTNIALLTILHEIESNINPYGYLDKDNFKIIYIAPLK 547

Query: 561  ALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTY 620
            AL +E+V   SN L+   +  +EL+GD  LT+++++ETQIIVTTPEKWD+ITRKS D   
Sbjct: 548  ALASEMVEKFSNSLKYLGIVSKELTGDMQLTQKELKETQIIVTTPEKWDVITRKSSDVAL 607

Query: 621  TQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFL 680
            T+LV+L+IIDEIHLLH+ RGPVLE IVART+RQ+ETT+E IR+VGLSATLPNY+DVA F+
Sbjct: 608  TKLVRLIIIDEIHLLHEERGPVLECIVARTLRQVETTQEMIRIVGLSATLPNYKDVARFI 667

Query: 681  RVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQL-MNDLCYEKV-VAVAGKHQVLI 738
            R     G  +FD+SYRPVPL+Q +IG++  + +   +  MN LCYE++  ++   HQV+I
Sbjct: 668  RAP-ASGTHFFDSSYRPVPLTQNFIGVKDNQGIMVMKNNMNQLCYERLEKSLKEGHQVMI 726

Query: 739  FVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFA 798
            FVHSRK+T K+A  + D A E     RF  E+       +   + VKS +++ L  +G +
Sbjct: 727  FVHSRKDTVKSAEILSDMAKEKHF--RFSNEEPSFGA--KKEFEKVKSKEIRSLFQHGIS 782

Query: 799  IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTE 858
            +HHAG+ R DR +VE  F +G ++VLV TATLAWGVNLPAHTVIIKGTQ+YN + G + +
Sbjct: 783  VHHAGLLRSDRNVVEKYFANGTIKVLVCTATLAWGVNLPAHTVIIKGTQVYNAKNGGFMD 842

Query: 859  LSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNA 918
            L   D+MQ+ GRAGRPQ+D+ GEG ++T   +L +YLSLM+  +PIES+F++ L D LNA
Sbjct: 843  LGISDVMQIFGRAGRPQFDTSGEGFLLTSKDKLDHYLSLMSSSMPIESKFITNLEDHLNA 902

Query: 919  EIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATI 978
            EIVLGTV N  EA NW+ YTYL+IRML+NP +YG+      +D  L E + +++  AA  
Sbjct: 903  EIVLGTVSNVNEAVNWLSYTYLFIRMLQNPLVYGIPSSQRSKDPQLEEFKREIIIRAAKK 962

Query: 979  LDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEE 1038
            L++  + ++D +S    +T+LGRIAS+YYI H +I T+NE L   +G  ++  + S S E
Sbjct: 963  LEQCKMTRFDEQSENLGMTELGRIASHYYIKHPSIETFNEMLNDQLGQDQVLNILSNSSE 1022

Query: 1039 FKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVF 1098
            F+ +T+R++E  EL KL +      + ++ +  +K+  LLQA+ S+  ++G SL SD  +
Sbjct: 1023 FENITLREEESTELDKLAEN-QCYYELTVLDSHSKVKCLLQAFFSRANIDGFSLVSDSNY 1081

Query: 1099 ITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKL 1158
              Q++ R+LR LFEI LK+GW  +++  L+L KMV  ++W  ++PLRQ   +  + + K+
Sbjct: 1082 TVQNSSRILRGLFEISLKKGWCTVSKTILDLCKMVDHQLWHFESPLRQAKVLSLDTIRKI 1141

Query: 1159 EKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELT 1218
            E++D+  ER  D+   EL  ++    + +T  K   QFP+L     VQPIT  ++++ +T
Sbjct: 1142 EERDWTPERICDMEIGELSFVLGNQLIAKTTRKIAQQFPQLDFEIQVQPITANIIRINMT 1201

Query: 1219 ITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFT--VPIYEP 1276
            + P F W+DK+HG  +PFW+ V+DN+ +YI H EYFML K+   +   +  T  +P+  P
Sbjct: 1202 LIPMFSWNDKMHGDSQPFWIWVQDNESQYIFHSEYFMLTKKIYNQTEPITLTCIIPLPNP 1261

Query: 1277 LPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEK-YPPPTELLDLQPLPVTALRNPLYEAL 1335
            +P Q+F+  +SD+WLGS+ +  +SFRHL+LP++     TELLDLQPLP  AL+N  +E+L
Sbjct: 1262 MPSQFFLHYISDRWLGSEGIREISFRHLVLPQQDRVVNTELLDLQPLPKEALKNKDFESL 1321

Query: 1336 YQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVY 1395
            ++ F HFNPIQTQVF  LY T++NVL+ +PTGSGKTIC+E A+ +  +       M+ VY
Sbjct: 1322 FK-FSHFNPIQTQVFHTLYYTNNNVLLGSPTGSGKTICAELAMFKVFRDEPH---MKVVY 1377

Query: 1396 IAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRR 1455
            IAPL+AL +ER  DW++KF + LG ++VELTG+   ++  L+   I+ +TPEKWD +SR 
Sbjct: 1378 IAPLKALVRERMNDWKVKFQEKLGKKLVELTGDYTPNMIALQNADIVTTTPEKWDGISRN 1437

Query: 1456 WKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAK 1515
            WK R YV  VSL IIDE+HLIG   GP+LEVIVSRM+ I+ Q    IR+V LST++ANA 
Sbjct: 1438 WKNRSYVTSVSLLIIDEIHLIGELRGPILEVIVSRMKLISKQTGVNIRVVGLSTAMANAI 1497

Query: 1516 DLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEK 1575
            DL EW+G    GLFNF P  RPVP+E+HIQG    N+  RMQ M KP+F AI  ++  +K
Sbjct: 1498 DLSEWMGIDRVGLFNFRPSCRPVPIEVHIQGFQGKNYCPRMQTMNKPSFAAIATYSP-KK 1556

Query: 1576 PALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAE--EVEPFIDNIQEEMLKATLR 1633
            P L+FV SR+  RLTA+DL++Y  +D D     L W  +  ++EP +  ++++ L+ TL 
Sbjct: 1557 PVLIFVSSRRQTRLTALDLISYLVVDNDP----LQWIQKGFDIEPTLARVKDQHLRHTLS 1612

Query: 1634 HGVGYLHEGLNKTDQEVVSALFEAGKIKI 1662
             G+G  H GLN  D+ +V +LF   KI+I
Sbjct: 1613 FGIGMHHAGLNDGDRTIVESLFGENKIQI 1641



 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 222/684 (32%), Positives = 381/684 (55%), Gaps = 37/684 (5%)

Query: 473  NEKLIKISEMPEWA------QPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTN 526
            N +L+ +  +P+ A      +  FK  +  N +Q++V+ +   + +N+LL +PTG+GKT 
Sbjct: 1299 NTELLDLQPLPKEALKNKDFESLFK-FSHFNPIQTQVFHTLYYTNNNVLLGSPTGSGKTI 1357

Query: 527  VAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVRELS 585
             A L + +            +  + K+VY+AP+KALV E + +   + Q     K+ EL+
Sbjct: 1358 CAELAMFKVFR---------DEPHMKVVYIAPLKALVRERMNDWKVKFQEKLGKKLVELT 1408

Query: 586  GDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES 645
            GD T     ++   I+ TTPEKWD I+R   +R+Y   V LLIIDEIHL+ + RGP+LE 
Sbjct: 1409 GDYTPNMIALQNADIVTTTPEKWDGISRNWKNRSYVTSVSLLIIDEIHLIGELRGPILEV 1468

Query: 646  IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI 705
            IV+R     + T  +IR+VGLS  + N  D++ ++ ++   GLF F  S RPVP+     
Sbjct: 1469 IVSRMKLISKQTGVNIRVVGLSTAMANAIDLSEWMGID-RVGLFNFRPSCRPVPIEVHIQ 1527

Query: 706  GIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTA-RAIRDTALENDTLG 764
            G Q K    R Q MN   +  +   + K  VLIFV SR++T  TA   I    ++ND L 
Sbjct: 1528 GFQGKNYCPRMQTMNKPSFAAIATYSPKKPVLIFVSSRRQTRLTALDLISYLVVDNDPLQ 1587

Query: 765  RFLK----EDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGH 820
               K    E +++R         VK   L+  L +G  +HHAG+  GDR +VE LFG+  
Sbjct: 1588 WIQKGFDIEPTLAR---------VKDQHLRHTLSFGIGMHHAGLNDGDRTIVESLFGENK 1638

Query: 821  VQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYG 880
            +Q+L+ST+TLAWGVNLPAH VIIKGT+ ++ +   + +    D++QM+GRAGRPQ+D  G
Sbjct: 1639 IQILISTSTLAWGVNLPAHLVIIKGTEYFDGKTKRYVDFPLTDVLQMIGRAGRPQFDKEG 1698

Query: 881  EGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYL 940
            + +++    + ++Y   +    P+ES     L D LNAEIV GT+Q+ + A N++  T+ 
Sbjct: 1699 KAMVMVHEPKKQFYKKFLYDPFPVESHLKDFLHDHLNAEIVSGTIQSKQGAINYLVNTFF 1758

Query: 941  YIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLG 1000
            + R++ +P+ YGL    ++    + +  +DL+ +    L++++ ++ +       ++ +G
Sbjct: 1759 FRRLVVSPSYYGLEDNSVE---AVNQYLSDLLDSTLADLEQSSCIEINEYDEIIPMS-MG 1814

Query: 1001 RIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVP 1060
            +IAS+YY+++ T+  +++++K       L R+ S + E+    VR +E++   +L + +P
Sbjct: 1815 KIASFYYLNYKTVQNFSDNIKRDSDIKTLLRVLSDAAEYSEFPVRHNEEILNQELNENLP 1874

Query: 1061 IPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWA 1120
            I +  + E+   K+++LLQA+  +  L     T+D         R+L+A+ ++  + G+ 
Sbjct: 1875 IKIG-NYEDSHTKVHLLLQAHFQRCPLPITDFTTDTKSALDQGIRILQAMIDVSFEYGYF 1933

Query: 1121 QLAEKALNLSKMVTKRMWSVQTPL 1144
              A + + L +M+ +  W   + L
Sbjct: 1934 ATAIQVIRLLQMLVQGRWDYDSSL 1957


>sp|E7F8F4|ASCC3_DANRE Activating signal cointegrator 1 complex subunit 3 OS=Danio rerio
            GN=ascc3 PE=3 SV=2
          Length = 1534

 Score = 1159 bits (2997), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 575/1223 (47%), Positives = 811/1223 (66%), Gaps = 46/1223 (3%)

Query: 445  LPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVY 504
            LPEG +R  NK YEE+ +P  +  P+   EK + +SE+ E  Q  FKGM +LNR+QS V+
Sbjct: 23   LPEGIRRDNNKMYEEVEIPPNEPMPIGFEEKAVFVSELDEIGQLVFKGMKRLNRIQSIVF 82

Query: 505  KSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564
            ++A ++ +N+L+CAPTGAGKTN+A+LTIL ++  +    G      +KIVYVAPMKAL A
Sbjct: 83   ETAYNTNENLLICAPTGAGKTNIAMLTILHEIRQHLQPGGVIRKDQFKIVYVAPMKALAA 142

Query: 565  EVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS-GDRTYTQL 623
            E+    S RL+   + V+EL+GD  LT+ +I  TQ++VTTPEKWD++TRKS GD   +Q+
Sbjct: 143  EMTNYFSKRLEPLGIAVKELTGDMQLTKGEILRTQMLVTTPEKWDVVTRKSVGDVALSQV 202

Query: 624  VKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683
            V+LLI+DE+HLLH++RGPVLES+VART+RQ+E+T+  IR++GLSATLPNY DVA FL VN
Sbjct: 203  VRLLILDEVHLLHEDRGPVLESLVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVN 262

Query: 684  LEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVHS 742
               GLFYFD+ +RPVPL Q ++GI+    +Q+   M ++CYEKV+  +   HQV++FVH+
Sbjct: 263  PFIGLFYFDSRFRPVPLGQSFVGIKTTNKVQQLHDMEEVCYEKVLKQIKAGHQVMVFVHA 322

Query: 743  RKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA 802
            R  T +TA ++ + A     L  F  +        +      ++  ++++ P GF IHHA
Sbjct: 323  RNSTVRTAMSLIEMAKNRGELSFFQVDQGADYGQCEKQIQRSRNKQMREMFPDGFGIHHA 382

Query: 803  GMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPL 862
            GM R DR L+E +F  G+++VLV TATLAWGVNLPAH VIIKGT IY+ ++G   +L  L
Sbjct: 383  GMLRQDRSLMESMFSRGYLKVLVCTATLAWGVNLPAHAVIIKGTNIYDAKRGTLVDLGIL 442

Query: 863  DIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVL 922
            D+MQ+ GRAGRPQ+D YGEG IIT H +L +YL+L+ QQ PIESQF   LAD LNAEI L
Sbjct: 443  DVMQIFGRAGRPQFDKYGEGTIITTHDKLSHYLTLLTQQNPIESQFQQSLADNLNAEIAL 502

Query: 923  GTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRN 982
            GTV N  EA  W+ YTYLY+RM  NP  YG+  +  + D  L   R +LV  +   LD+ 
Sbjct: 503  GTVTNVDEAVRWLSYTYLYVRMRANPLAYGINHKAYQMDPQLELYRKELVVESGRKLDKA 562

Query: 983  NLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYV 1042
             ++++D ++GYF  TDLGR AS++YI + TI ++NE       + ++  + S +EEF+ +
Sbjct: 563  RMIRFDERTGYFASTDLGRTASHFYIKYNTIESFNELFNAQNTEADVLSIVSKAEEFEQI 622

Query: 1043 TVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQS 1102
             VR                 V+E   +  + + +L  ++ +                  +
Sbjct: 623  KVR-----------------VQEEDADGKSSVQILCGSHHT------------------N 647

Query: 1103 AGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKD 1162
            A R++RALFE+ L++ W  +  + LNL K++ KR+W    PLRQFN +P   L ++E K+
Sbjct: 648  AARIMRALFEMALRKRWPAMTYRLLNLCKVMDKRLWGWAHPLRQFNTLPASALARMEDKN 707

Query: 1163 FAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPD 1222
               ++  D+   E+G ++    +G  + + VHQ P ++L + +QPITRTVL+V L+ITPD
Sbjct: 708  LTIDKLRDMGKDEIGHMLHHVNIGLKVKQCVHQIPAILLESSIQPITRTVLRVRLSITPD 767

Query: 1223 FLWDDKVHGYV-EPFWVIVEDNDGEYILHHEYFMLKKQYI--EEDHSLNFTVPIYEPLPP 1279
            F W+D+VHG V EP+W+ VED   ++I H EYF+L+K+ +   E   + FT+PI+EP+P 
Sbjct: 768  FRWNDQVHGSVGEPWWLWVEDPINDHIYHSEYFLLQKKQVVSGEPQQVVFTIPIFEPMPS 827

Query: 1280 QYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGF 1339
            QY+IR VSD+WLGS+ V  ++F+HLILPE++PP TELLDLQPLP+TAL N  YE+LY+ F
Sbjct: 828  QYYIRAVSDRWLGSEAVCIINFQHLILPERHPPHTELLDLQPLPITALGNREYESLYK-F 886

Query: 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPL 1399
             H+NPIQTQ+F  LY+TD NVL+ APTGSGKTI +E AI R       + V   VYIAPL
Sbjct: 887  THYNPIQTQIFHTLYHTDTNVLLGAPTGSGKTIAAEMAIFRVFNMYPTSKV---VYIAPL 943

Query: 1400 EALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQR 1459
            +AL +ER  DW+I+  + LG +VVELTG+   D++ + +  +I++TPEKWD +SR W+ R
Sbjct: 944  KALVRERIEDWKIRIEEKLGRKVVELTGDNTPDMRAIAQADLIVTTPEKWDGVSRSWQNR 1003

Query: 1460 KYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGE 1519
             YVQ+V++ IIDE+HL+G   GPVLEVIVSR  +I+S     +R+V LST+LANA+DL +
Sbjct: 1004 SYVQKVAILIIDEIHLLGEDRGPVLEVIVSRTNFISSHTSKTVRVVGLSTALANARDLAD 1063

Query: 1520 WIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALV 1579
            W+G    GLFNF P VRPVPLE+HIQG    ++  RM  M KP F AI  H+   KP L+
Sbjct: 1064 WLGIGQVGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMATMNKPVFQAIRTHSP-AKPVLI 1122

Query: 1580 FVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYL 1639
            FV SR+  RLTA+DL+ + + + D K  +L     E+   I  I+E  LK TL  G+G  
Sbjct: 1123 FVSSRRQTRLTALDLIAFLATEDDPKQ-WLHQDEREMTDIIATIRESNLKLTLAFGIGMH 1181

Query: 1640 HEGLNKTDQEVVSALFEAGKIKI 1662
            H GL++ D++ V  LF   KI++
Sbjct: 1182 HAGLHERDRKTVEELFVNCKIQV 1204



 Score =  346 bits (888), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 208/576 (36%), Positives = 327/576 (56%), Gaps = 34/576 (5%)

Query: 472  PNEKLIKISEMPEWA-----QPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTN 526
            P+ +L+ +  +P  A       +    T  N +Q++++ +   +  N+LL APTG+GKT 
Sbjct: 860  PHTELLDLQPLPITALGNREYESLYKFTHYNPIQTQIFHTLYHTDTNVLLGAPTGSGKTI 919

Query: 527  VAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVRELS 585
             A + I +   +         +   K+VY+AP+KALV E + +   R++     KV EL+
Sbjct: 920  AAEMAIFRVFNM---------YPTSKVVYIAPLKALVRERIEDWKIRIEEKLGRKVVELT 970

Query: 586  GDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES 645
            GD T   + I +  +IVTTPEKWD ++R   +R+Y Q V +LIIDEIHLL ++RGPVLE 
Sbjct: 971  GDNTPDMRAIAQADLIVTTPEKWDGVSRSWQNRSYVQKVAILIIDEIHLLGEDRGPVLEV 1030

Query: 646  IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI 705
            IV+RT      T + +R+VGLS  L N  D+A +L +  + GLF F  S RPVPL     
Sbjct: 1031 IVSRTNFISSHTSKTVRVVGLSTALANARDLADWLGIG-QVGLFNFRPSVRPVPLEVHIQ 1089

Query: 706  GIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGR 765
            G   +    R   MN   ++ +   +    VLIFV SR++T  TA  +       D   +
Sbjct: 1090 GFPGQHYCPRMATMNKPVFQAIRTHSPAKPVLIFVSSRRQTRLTALDLIAFLATEDDPKQ 1149

Query: 766  FLKEDSVSREILQSHTDMV---KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQ 822
            +L +D   RE+    TD++   + ++LK  L +G  +HHAG+   DR+ VE+LF +  +Q
Sbjct: 1150 WLHQDE--REM----TDIIATIRESNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKIQ 1203

Query: 823  VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 882
            VL++T+TLAWGVN PAH VI+KGT+ Y+ +   + +    D++QM+GRAGRPQ+D  G+ 
Sbjct: 1204 VLIATSTLAWGVNFPAHLVIVKGTEYYDGKTRRYVDYPITDVLQMMGRAGRPQFDDQGKA 1263

Query: 883  IIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYI 942
            +I+    +  +Y   + +  P+ES  +S L+D LNAEI  GTV + ++A ++I +TY + 
Sbjct: 1264 VILVHDIKKDFYKKFLYEPFPVESSLLSVLSDHLNAEIAAGTVTSKQDAMDYITWTYFFR 1323

Query: 943  RMLRNPALYGLAPEVLKEDI---TLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDL 999
            R++ NP+ Y L      +DI   T+ +  ++LV  +   L+ +  ++  +     +    
Sbjct: 1324 RLVMNPSYYNL------DDISHETINKYLSNLVERSLRDLECSYCMEIQQDEQTIEPLTY 1377

Query: 1000 GRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSL 1035
            GRI+SYYY+ H TI  + E LKP +   EL  + SL
Sbjct: 1378 GRISSYYYLKHQTIRMFKERLKPELPVHELLAILSL 1413


>sp|O60072|MUG81_SCHPO Putative helicase mug81 OS=Schizosaccharomyces pombe (strain 972 /
            ATCC 24843) GN=mug81 PE=1 SV=1
          Length = 1935

 Score = 1115 bits (2883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 593/1357 (43%), Positives = 852/1357 (62%), Gaps = 53/1357 (3%)

Query: 345  EERKKIEEEMMGL-GPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGR 403
            E++  I+E+++ L G D   ++  + A  +   E   N   +    A +L D   S+ G 
Sbjct: 107  EDQCAIQEDLLNLVGLDHIDLISDIVANSSNLIEEYMNQNDT--SIAAQLSDGYTSEAGS 164

Query: 404  DR---RGLVDR------------DADGGWLGQRQLLDLDTLAFQQGGLFMAN------RK 442
                 +GL+D             D  G     +Q+ +++      G   + N      +K
Sbjct: 165  SATHGQGLLDSLKSRPRRFSRSRDNRGPLFTGQQVFEVEKYPHVYGDKRLGNTISVIGKK 224

Query: 443  CDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSR 502
              LP GS+R   + YEEI VP  +  P    EKL++IS M    +  F     LNR+QS 
Sbjct: 225  FALPAGSEREDYQKYEEIIVPHAQRAPQMQGEKLLEISSMDILCRKTFLSYQTLNRIQSL 284

Query: 503  VYKSALSSADNILLCAPTGAGKTNVAVLTILQQLA-----LNRNDDG---SFNHSNYKIV 554
            VY  A  + +N+L+CAPTGAGKT+VA+L +LQ ++     +N  D+      +  ++KIV
Sbjct: 285  VYPIAYKTNENMLICAPTGAGKTDVALLAMLQTISNYVESMNLMDESEPLDVHRDDFKIV 344

Query: 555  YVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRK 614
            Y+APMKAL AEVV  +  RL    +K REL+GD  LT+ +I ETQI+VTTPEKWD++TRK
Sbjct: 345  YIAPMKALAAEVVEKMGKRLAWLGLKTRELTGDMQLTKTEIAETQILVTTPEKWDVVTRK 404

Query: 615  S-GDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY 673
            S GD    + V+L+IIDE+H+LHD RG V+ES+VART R +ET+++ IR+VGLSATLPNY
Sbjct: 405  SVGDTQLAEKVRLVIIDEVHMLHDERGAVIESLVARTQRLVETSQQMIRIVGLSATLPNY 464

Query: 674  EDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGK 733
             DVA FL VN  KGLFYF +++RP P+ Q +IG +    +    + ++ C++KV+ +  +
Sbjct: 465  LDVADFLGVNRYKGLFYFSSAFRPCPIEQHFIGAKGSPKIVNSNI-DEACFDKVLKLIQE 523

Query: 734  -HQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDL 792
             HQV+IFVHSRKET  +A+ +R+                    + Q      K+ +LK+L
Sbjct: 524  GHQVMIFVHSRKETINSAKKLREQFFHEGEADLLDNSQHEKYSLAQRDVSKSKNKELKEL 583

Query: 793  LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPE 852
              Y   IH+AGM R DR L E LF  G +++L  TATLAWGVNLPA+ V+IKGTQ+Y+P+
Sbjct: 584  FKYSMGIHNAGMLRSDRHLTERLFSMGILKILCCTATLAWGVNLPAYAVLIKGTQLYDPQ 643

Query: 853  KGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKL 912
            KG++ +L  LD++Q+ GRAGRPQ++S     IIT H +L +Y+S++ QQ PIES+F  +L
Sbjct: 644  KGSFVDLGVLDVLQIFGRAGRPQFESSAVAYIITTHDKLSHYISVVTQQSPIESRFTDRL 703

Query: 913  ADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLV 972
             D LNAE+ LGTV N  EA +W+GYTYLYIRM RNP +YG+A + L ED  LG +R +LV
Sbjct: 704  VDNLNAEVSLGTVTNIDEAVSWLGYTYLYIRMRRNPLVYGIAYDELVEDPLLGSKRRELV 763

Query: 973  HTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRL 1032
              AA  L  N ++ Y++K+GY    DLGRIAS YYI++ T+ST N  LK  M + ++  L
Sbjct: 764  SVAAGRLADNQMIVYNKKNGYLIPKDLGRIASNYYINYQTVSTLNNLLKSKMSEADIIAL 823

Query: 1033 FSLSEEFKYVTVRQDEKMELAKLLDR-VPIPVKESLEEPSAKINVLLQAYISQLKLEGLS 1091
             S   EF  +  R++E  EL  L++   P  +++S+   S K+NV+LQ+YIS+  +E  +
Sbjct: 824  LSQCSEFSQIKSRENEHRELESLMENSSPCQLRDSISNTSGKVNVILQSYISRAHVEDFT 883

Query: 1092 LTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIP 1151
            LTSD  ++ Q+AGR+ RALFEI + R WA  A   L+L+K + +R WS + PL QF+ +P
Sbjct: 884  LTSDTNYVAQNAGRITRALFEIAMSRTWAS-AFTILSLNKSIDRRQWSFEHPLLQFD-LP 941

Query: 1152 NEILMKLEKK--DFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPIT 1209
            +++ +K+E +    + E   D+S  ELG+LI   KMG T+ KF+ + P L +   + P+T
Sbjct: 942  HDLAVKVENQCGSLSLEELSDMSTGELGDLIHNRKMGPTVKKFISKLPLLNINVDLLPLT 1001

Query: 1210 RTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNF 1269
            + VL++ L ITP+F WD + HG  + FW+ VED++G  ILHHE  +L K+ +   H L+F
Sbjct: 1002 KNVLRLVLNITPNFNWDMRYHGNSQMFWIFVEDSNGLEILHHEQLLLNKRNVSTSHLLSF 1061

Query: 1270 TVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRN 1329
            T+P+  PLP Q +I  VSDKWLG++TV PVS  +++  +   P TELLDLQPLP+TAL +
Sbjct: 1062 TIPVSNPLPSQLYIIAVSDKWLGAETVTPVSLSNVVFHDDSNPITELLDLQPLPITALHD 1121

Query: 1330 PLYEALY-QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAI---LRNHQKA 1385
            P+ E +  + F  FN +QTQ F  +Y+TD N+ V APTGSGKT+ +E A    L N+ K+
Sbjct: 1122 PVLEGICAKRFSFFNAVQTQFFHTIYHTDTNIFVGAPTGSGKTMAAELATWRALHNYPKS 1181

Query: 1386 SETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIIST 1445
                  + VYIAP++AL KER +DW  +  + +G+ ++ELTG+T  D+K +    III+T
Sbjct: 1182 ------KVVYIAPMKALVKERVKDWGHRLVEPMGISMIELTGDTNPDVKAVTNANIIITT 1235

Query: 1446 PEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIV 1505
            PEKWD ++R WK RKYVQ VSL I+DE+HL+G   GPVLE+IVSRM Y+ASQ   K+R++
Sbjct: 1236 PEKWDGITRSWKSRKYVQDVSLIILDEIHLLGSDRGPVLEMIVSRMNYVASQTNKKVRVL 1295

Query: 1506 ALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFT 1565
             LST++ANA DL  W+     GLFNF   VRPVPLEI+I G     +  RM +M KP F 
Sbjct: 1296 GLSTAVANANDLANWLN-IRDGLFNFRHSVRPVPLEIYIDGFPGRAYCPRMMSMNKPAFQ 1354

Query: 1566 AIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQE 1625
            AI  H+  + P L+FV SR+  RLTA DL+ +  ++ D    FL    EE+E  +  +++
Sbjct: 1355 AIKTHSPTQ-PVLIFVSSRRQTRLTAKDLIAFCGLE-DNPRRFLYMDEEELEMIVSEVED 1412

Query: 1626 EMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKI 1662
            + LK  L  G+   H GL + D+++   LF   K++I
Sbjct: 1413 KSLKLALPFGIALHHAGLTENDRKISEELFVNNKVQI 1449



 Score =  355 bits (912), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 228/691 (32%), Positives = 364/691 (52%), Gaps = 45/691 (6%)

Query: 467  HKPLDPNEKLIKISEMPEWA--QPAFKGMTQ-----LNRVQSRVYKSALSSADNILLCAP 519
            H   +P  +L+ +  +P  A   P  +G+        N VQ++ + +   +  NI + AP
Sbjct: 1099 HDDSNPITELLDLQPLPITALHDPVLEGICAKRFSFFNAVQTQFFHTIYHTDTNIFVGAP 1158

Query: 520  TGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL-QMYD 578
            TG+GKT  A L   + L          N+   K+VY+APMKALV E V +  +RL +   
Sbjct: 1159 TGSGKTMAAELATWRAL---------HNYPKSKVVYIAPMKALVKERVKDWGHRLVEPMG 1209

Query: 579  VKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDN 638
            + + EL+GD     + +    II+TTPEKWD ITR    R Y Q V L+I+DEIHLL  +
Sbjct: 1210 ISMIELTGDTNPDVKAVTNANIIITTPEKWDGITRSWKSRKYVQDVSLIILDEIHLLGSD 1269

Query: 639  RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPV 698
            RGPVLE IV+R       T + +R++GLS  + N  D+A +L  N+  GLF F +S RPV
Sbjct: 1270 RGPVLEMIVSRMNYVASQTNKKVRVLGLSTAVANANDLANWL--NIRDGLFNFRHSVRPV 1327

Query: 699  PLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTAL 758
            PL     G   +    R   MN   ++ +   +    VLIFV SR++T  TA+ +     
Sbjct: 1328 PLEIYIDGFPGRAYCPRMMSMNKPAFQAIKTHSPTQPVLIFVSSRRQTRLTAKDLIAFCG 1387

Query: 759  ENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGD 818
              D   RFL  D    E++ S    V+   LK  LP+G A+HHAG+T  DR++ E+LF +
Sbjct: 1388 LEDNPRRFLYMDEEELEMIVSE---VEDKSLKLALPFGIALHHAGLTENDRKISEELFVN 1444

Query: 819  GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDS 878
              VQ+L++T+TLAWGVN PAH VI+KGT+ Y+ + G + ++   D++QMLGRAGRPQ+D+
Sbjct: 1445 NKVQILIATSTLAWGVNTPAHLVIVKGTEYYDAKIGGYKDMDLTDVLQMLGRAGRPQFDN 1504

Query: 879  YGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYT 938
             G   I     +  +Y   ++   P+ES     L + LNAEI  GT+   + A +++  T
Sbjct: 1505 SGVARIFVQDIKKSFYKHFLHSGFPVESYLHKVLDNHLNAEIATGTIDCIQGAMDFLTCT 1564

Query: 939  YLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTD 998
            Y Y R+ +NP  YG   +  K   ++    + LV TA   L+++  + Y      +  T 
Sbjct: 1565 YFYRRVHQNPVYYGADGDDQK---SIDTYLSKLVVTAFNELEKSACI-YRVNEETYAPTT 1620

Query: 999  LGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDR 1058
            LGRI SYYY+ H TI  + + +          +L + + EF  + +R +E        D 
Sbjct: 1621 LGRIVSYYYLFHTTIRNFVQKITENAEFDLALQLLAEASEFDDLAIRHNE--------DL 1672

Query: 1059 VPIPVKESLEEPSAKIN-----------VLLQAYISQLKLEGLSLTSDMVFITQSAGRLL 1107
            + I + +SL+  +A +N           +L QA++++LKL      +D   +     R++
Sbjct: 1673 INIEINKSLKYSAACLNLPMVDAHVKAFILTQAHMARLKLPVDDYVTDTSTVLDQVIRII 1732

Query: 1108 RALFEIVLKRGWAQLAEKALNLSKMVTKRMW 1138
            ++  ++  + G++ +  + ++L + + +  +
Sbjct: 1733 QSYIDVSAELGYSHVCLQYISLMQCLKQACY 1763


>sp|P53327|SLH1_YEAST Antiviral helicase SLH1 OS=Saccharomyces cerevisiae (strain ATCC
            204508 / S288c) GN=SLH1 PE=1 SV=2
          Length = 1967

 Score = 1036 bits (2679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/1245 (42%), Positives = 806/1245 (64%), Gaps = 30/1245 (2%)

Query: 435  GLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPN---EKLIKISEMPEWAQPAFK 491
             +  A +K  LP G+ R +   +EEI +PA      + N    KL+KIS++  + +  F 
Sbjct: 226  AMAFAGQKFTLPVGTTRMSYNTHEEIIIPAADQAS-NKNYLYTKLLKISDLDHFCKTVFP 284

Query: 492  GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQL----ALNRNDDGSFN 547
              T LN++QS VY  A  + +N+L+CAPTGAGKT++A+LTI+  +     +N  ++    
Sbjct: 285  YET-LNQIQSLVYPVAYKTNENMLICAPTGAGKTDIALLTIINTIKQFSVVNGENEIDIQ 343

Query: 548  HSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEK 607
            + ++K++YVAP+KAL AE+V   S +L  ++++VREL+GD  LT+ +I  TQ+IVTTPEK
Sbjct: 344  YDDFKVIYVAPLKALAAEIVDKFSKKLAPFNIQVRELTGDMQLTKAEILATQVIVTTPEK 403

Query: 608  WDIITRKS-GDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGL 666
            WD++TRK+ GD      VKLLIIDE+HLLH++RG V+E++VART+RQ+E+++  IR++GL
Sbjct: 404  WDVVTRKANGDNDLVSKVKLLIIDEVHLLHEDRGSVIETLVARTLRQVESSQSMIRIIGL 463

Query: 667  SATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKK-PLQRFQLMNDLCYE 725
            SATLPN+ DVA FL VN + G+FYFD S+RP PL QQ +G + K    Q  + ++ + Y+
Sbjct: 464  SATLPNFMDVADFLGVNRQIGMFYFDQSFRPKPLEQQLLGCRGKAGSRQSKENIDKVAYD 523

Query: 726  KVVAVAGK-HQVLIFVHSRKETAKTARAIRDTALENDTLGRF----LKEDSVSREILQSH 780
            K+  +  + +QV++FVHSRKET K+AR     A  N  +  F    +++D  SR ++++ 
Sbjct: 524  KLSEMIQRGYQVMVFVHSRKETVKSARNFIKLAESNHEVDLFAPDPIEKDKYSRSLVKN- 582

Query: 781  TDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHT 840
                +  D+K++  +GF IHHAGM R DR L E +F DG ++VL  TATLAWGVNLPA  
Sbjct: 583  ----RDKDMKEIFQFGFGIHHAGMARSDRNLTEKMFKDGAIKVLCCTATLAWGVNLPADC 638

Query: 841  VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSY-GEGIIITGHSELRYYLSLMN 899
            VIIKGTQ+Y+ +KG + +L   D++Q+ GR GRP + S  G GI+ T +  L +Y+SL+ 
Sbjct: 639  VIIKGTQVYDSKKGGFIDLGISDVIQIFGRGGRPGFGSANGTGILCTSNDRLDHYVSLIT 698

Query: 900  QQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLK 959
            QQ PIES+F SKL D LNAEI LG+V N  EA  W+GYTY+++RM +NP  YG+  E + 
Sbjct: 699  QQHPIESRFGSKLVDNLNAEISLGSVTNVDEAIEWLGYTYMFVRMRKNPFTYGIDWEEIA 758

Query: 960  EDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEH 1019
             D  L ERR  ++  AA  L    ++ +D  S +F   DLGR++S +Y+ + ++  +N+ 
Sbjct: 759  NDPQLYERRRKMIVVAARRLHALQMIVFDEVSMHFIAKDLGRVSSDFYLLNESVEIFNQM 818

Query: 1020 LKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDR-VPIPVKESLEEPSAKINVLL 1078
              P   + ++  + S+S EF  +  R++E  EL +L D  V   +   L+ P  K NVLL
Sbjct: 819  CDPRATEADVLSMISMSSEFDGIKFREEESKELKRLSDESVECQIGSQLDTPQGKANVLL 878

Query: 1079 QAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMW 1138
            QAYISQ ++   +L+SD  ++ Q++ R+ RALF I + R W + +   LN+ K + KR+W
Sbjct: 879  QAYISQTRIFDSALSSDSNYVAQNSVRICRALFLIGVNRRWGKFSNVMLNICKSIEKRLW 938

Query: 1139 SVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPK 1198
            +   PL QF+ +P  I+ ++     + E   +L   ELGEL+   K G  L+K + +FPK
Sbjct: 939  AFDHPLCQFD-LPENIIRRIRDTKPSMEHLLELEADELGELVHNKKAGSRLYKILSRFPK 997

Query: 1199 LILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKK 1258
            + + A + PIT  V+++ + + PDF+WD ++HG  + FWV VE++D   ILH E F+L +
Sbjct: 998  INIEAEIFPITTNVMRIHIALGPDFVWDSRIHGDAQFFWVFVEESDKSQILHFEKFILNR 1057

Query: 1259 QYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLD 1318
            + +   H ++F +P+ +PLPPQ  ++VVSD W+G ++   +SF+HLI P      T+LL 
Sbjct: 1058 RQLNNQHEMDFMIPLSDPLPPQVVVKVVSDTWIGCESTHAISFQHLIRPFNETLQTKLLK 1117

Query: 1319 LQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAI 1378
            L+PLP +AL+NPL E++Y  FK+FNP+QT  F  LYNT++N  V +PTGSGKTI +E AI
Sbjct: 1118 LRPLPTSALQNPLIESIYP-FKYFNPMQTMTFYTLYNTNENAFVGSPTGSGKTIVAELAI 1176

Query: 1379 LRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEK 1438
               H   +  G  + VYIAP++AL +ER  DW  K     G +VVELTG++  D K +  
Sbjct: 1177 W--HAFKTFPG-KKIVYIAPMKALVRERVDDWRKKITPVTGDKVVELTGDSLPDPKDVHD 1233

Query: 1439 GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV 1498
              I+I+TPEK+D +SR W+ RK+VQ VSL I+DE+HL+    GP+LE+IVSRM YI+SQ 
Sbjct: 1234 ATIVITTPEKFDGISRNWQTRKFVQDVSLIIMDEIHLLASDRGPILEMIVSRMNYISSQT 1293

Query: 1499 ENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGV-DITNFEARMQ 1557
            +  +R++ +ST+++NA D+  W+G   HGL+NFP  VRPVPL+++I G  D   F   M+
Sbjct: 1294 KQPVRLLGMSTAVSNAYDMAGWLGVKDHGLYNFPSSVRPVPLKMYIDGFPDNLAFCPLMK 1353

Query: 1558 AMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVE 1617
             M KP F AI QH+  +KPAL+FV SR+  RLTA+DL+    M+ + +    +   EE++
Sbjct: 1354 TMNKPVFMAIKQHSP-DKPALIFVASRRQTRLTALDLIHLCGMEDNPRRFLNIDDEEELQ 1412

Query: 1618 PFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKI 1662
             ++  + ++ LK +L+ G+G  H GL + D+ +   LF+  KI+I
Sbjct: 1413 YYLSQVTDDTLKLSLQFGIGLHHAGLVQKDRSISHQLFQKNKIQI 1457



 Score =  334 bits (857), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 234/758 (30%), Positives = 381/758 (50%), Gaps = 43/758 (5%)

Query: 456  GYEEIHVPAMKH--KPLDPN--EKLIKISEMPEWA--QPAFKGM---TQLNRVQSRVYKS 506
            G E  H  + +H  +P +     KL+K+  +P  A   P  + +      N +Q+  + +
Sbjct: 1091 GCESTHAISFQHLIRPFNETLQTKLLKLRPLPTSALQNPLIESIYPFKYFNPMQTMTFYT 1150

Query: 507  ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566
              ++ +N  + +PTG+GKT VA L I                   KIVY+APMKALV E 
Sbjct: 1151 LYNTNENAFVGSPTGSGKTIVAELAIWHAFK---------TFPGKKIVYIAPMKALVRER 1201

Query: 567  VGNLSNRLQ-MYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVK 625
            V +   ++  +   KV EL+GD     + + +  I++TTPEK+D I+R    R + Q V 
Sbjct: 1202 VDDWRKKITPVTGDKVVELTGDSLPDPKDVHDATIVITTPEKFDGISRNWQTRKFVQDVS 1261

Query: 626  LLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLE 685
            L+I+DEIHLL  +RGP+LE IV+R       TK+ +RL+G+S  + N  D+A +L V  +
Sbjct: 1262 LIIMDEIHLLASDRGPILEMIVSRMNYISSQTKQPVRLLGMSTAVSNAYDMAGWLGVK-D 1320

Query: 686  KGLFYFDNSYRPVPLSQQYIGIQ---VKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHS 742
             GL+ F +S RPVPL     G        PL +   MN   +  +   +     LIFV S
Sbjct: 1321 HGLYNFPSSVRPVPLKMYIDGFPDNLAFCPLMK--TMNKPVFMAIKQHSPDKPALIFVAS 1378

Query: 743  RKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA 802
            R++T  TA  +       D   RFL  D    E LQ +   V  + LK  L +G  +HHA
Sbjct: 1379 RRQTRLTALDLIHLCGMEDNPRRFLNIDD--EEELQYYLSQVTDDTLKLSLQFGIGLHHA 1436

Query: 803  GMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPL 862
            G+ + DR +   LF    +Q+L++T+TLAWGVNLPAH VIIKGTQ ++ +   + ++   
Sbjct: 1437 GLVQKDRSISHQLFQKNKIQILIATSTLAWGVNLPAHLVIIKGTQFFDAKIEGYRDMDLT 1496

Query: 863  DIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVL 922
            DI+QM+GRAGRP YD+ G  I+ T  S+  +Y   +N   P+ES     L D L AEI  
Sbjct: 1497 DILQMMGRAGRPAYDTTGTAIVYTKESKKMFYKHFLNVGFPVESSLHKVLDDHLGAEITS 1556

Query: 923  GTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRN 982
            G++ N +EA +++ +T+L+ R   NP  YG+  +     ++  E  + L+ +    L  +
Sbjct: 1557 GSITNKQEALDFLSWTFLFRRAHHNPTYYGIEDDTSTAGVS--EHLSSLIDSTLENLRES 1614

Query: 983  NLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYV 1042
              V           T    I+SYYYISH TI    + +       E+ R  SL+ E+  +
Sbjct: 1615 QCVLLHGDD--IVATPFLSISSYYYISHLTIRQLLKQIHDHATFQEVLRWLSLAVEYNEL 1672

Query: 1043 TVRQDEKMELAKLLDRVPIPVKESLE--------EPSAKINVLLQAYISQLKLEGLSLTS 1094
             VR  E +   ++  +    V+ +          +P  K  +LLQA++S++ L       
Sbjct: 1673 PVRGGEIIMNEEMSQQSRYSVESTFTDEFELPMWDPHVKTFLLLQAHLSRVDLPIADYIQ 1732

Query: 1095 DMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEI 1154
            D V +   + R+L+A  ++  + G+       + + + + +  W    P+    G+    
Sbjct: 1733 DTVSVLDQSLRILQAYIDVASELGYFHTVLTMIKMMQCIKQGYWYEDDPVSVLPGLQ--- 1789

Query: 1155 LMKLEKKDFAWERYYDLSPQE-LGELIRFPKMGRTLHK 1191
            L +++   F+ + + +++PQ+   +L+   ++GR  +K
Sbjct: 1790 LRRIKDYTFSEQGFIEMTPQQKKKKLLTLEEIGRFGYK 1827


>sp|A2RUV5|HFM1_XENTR Probable ATP-dependent DNA helicase HFM1 OS=Xenopus tropicalis
            GN=hfm1 PE=2 SV=1
          Length = 1336

 Score =  335 bits (858), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 251/773 (32%), Positives = 392/773 (50%), Gaps = 57/773 (7%)

Query: 479  ISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKT---NVAVLTILQQ 535
            ++E+P+  +  FK     N +QS+  +  L S  N +LCAPTG+GKT    +A++ +L Q
Sbjct: 133  VTEIPKQFRTVFKEFPYFNYIQSKALEHLLYSDRNFVLCAPTGSGKTVIFELAIIRLLMQ 192

Query: 536  LALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ-Q 594
            + +          +N KIVY+AP+KAL  +   +   +     +  +EL+GD  +    +
Sbjct: 193  VPMP--------WTNVKIVYMAPIKALCGQRYDDWKAKFGPVGLNCKELTGDTEMDDLFE 244

Query: 595  IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL-HDNRGPVLESIVAR--TV 651
            I+   II+TTPEKWD +TRK  D T  QLV+L +IDE+H+L  +NRG  LE +V+R  T+
Sbjct: 245  IQHAHIIMTTPEKWDSMTRKWKDNTLVQLVRLFLIDEVHILKEENRGATLEVVVSRMKTI 304

Query: 652  RQIETTKEH------IRLVGLSATLPNYEDVALFLRVNLEKGLFY-FDNSYRPVPLSQQY 704
              +    E       +R V +SAT+PN ED+A +L      G+    D S RPV L +  
Sbjct: 305  YSLSHLSEDRKAFIPMRFVAVSATIPNVEDIADWLSDENSPGVCMKMDESSRPVKLRKVV 364

Query: 705  IGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQ----VLIFVHSRKETAKTARAIRDTALEN 760
            +G         F+    L Y K+  +   +      L+F  +RK   + A  +   A   
Sbjct: 365  LGFPCSTKQSEFKFDLTLNY-KIANIIQTYSDGRPTLVFCSTRKGVQQAASILTKDA--- 420

Query: 761  DTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGH 820
                +F+      ++ LQ   + +K + L+D+L YG   HHAG+   DR+++E+ F  G 
Sbjct: 421  ----KFVMSIE-HKQRLQKCANSIKDSKLRDVLQYGVGYHHAGVDISDRKVIENSFLIGD 475

Query: 821  VQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYG 880
            + VL +T+TLA GVNLPAH VI+K T  Y    G + E S  DI+QM+GRAGRPQ+DS  
Sbjct: 476  LPVLFTTSTLAMGVNLPAHLVIVKSTMHY--VSGMFQEYSETDILQMIGRAGRPQFDSTA 533

Query: 881  EGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYL 940
              +I+T  S    Y+ +++    IES     L + LNAEI L T+ + K A  WI  T+L
Sbjct: 534  TAVIMTRLSTKEKYVHMLDGADTIESSLHKHLVEHLNAEIALHTITDVKVALEWIRSTFL 593

Query: 941  YIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLG 1000
            YIR L+NPA YG +  + K  I +  +  +L       L    L+K D +   F+ T+ G
Sbjct: 594  YIRALKNPAYYGFSEGLDK--IGIEAKLQELCLKNLNDLSSLGLIKMDEEIN-FKPTETG 650

Query: 1001 RIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKL---LD 1057
            ++ + YYI+  T   ++  ++ T    EL  L S   EF  V +R +E+  L  L    +
Sbjct: 651  KLMALYYIAFNTAKLFHT-IRGTETLAELVSLISSCSEFSDVQLRANERRVLNTLNKDKN 709

Query: 1058 RVPI--PVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFE-IV 1114
            RV I  P++  ++    K+N L+QA++  + ++  SLT D+  I +   RL + L E + 
Sbjct: 710  RVTIRYPMEGKIKTKEMKVNCLIQAHLGCILVQDFSLTQDISKIFRHGTRLAKCLSEFLA 769

Query: 1115 LKRGWAQLAEKALNLSKMVTKRMWSVQTPL-RQFNGIPNEILMKLEKKDF-AWERYYDLS 1172
            L+         AL L+K    ++W   + + +Q   I   +   +       +++  D +
Sbjct: 770  LQENKFSAFLNALILTKCFKSKLWENSSHISKQLEKIGVTLANAMVNAGLTTFKKIEDTN 829

Query: 1173 PQELGELI--RFPKMGRTLHKFVHQFPKL-----ILAAHVQPITRTVLKVELT 1218
             +EL ELI  R P  G  + + V   PK       LA +       VL V LT
Sbjct: 830  AREL-ELIVNRHPPFGNQIKESVAHLPKYEIKFQQLAKYRATTAEVVLTVLLT 881



 Score =  184 bits (468), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 118/363 (32%), Positives = 197/363 (54%), Gaps = 35/363 (9%)

Query: 1323 PVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNH 1382
            PVT +    +  +++ F +FN IQ++    L  +D N ++ APTGSGKT+  E AI+R  
Sbjct: 132  PVTEIPKQ-FRTVFKEFPYFNYIQSKALEHLLYSDRNFVLCAPTGSGKTVIFELAIIRLL 190

Query: 1383 QKASETGV-MRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD-LKLLEKGQ 1440
             +       ++ VY+AP++AL  +RY DW+ KFG  +G+   ELTG+T MD L  ++   
Sbjct: 191  MQVPMPWTNVKIVYMAPIKALCGQRYDDWKAKFGP-VGLNCKELTGDTEMDDLFEIQHAH 249

Query: 1441 IIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIAS--- 1496
            II++TPEKWD+++R+WK    VQ V LF+IDE+H++  +  G  LEV+VSRM+ I S   
Sbjct: 250  IIMTTPEKWDSMTRKWKDNTLVQLVRLFLIDEVHILKEENRGATLEVVVSRMKTIYSLSH 309

Query: 1497 QVENK-----IRIVALSTSLANAKDLGEWIGATSHGLFNFPPGV--------RPVPLEIH 1543
              E++     +R VA+S ++ N +D+ +W+   +       PGV        RPV L   
Sbjct: 310  LSEDRKAFIPMRFVAVSATIPNVEDIADWLSDEN------SPGVCMKMDESSRPVKLRKV 363

Query: 1544 IQGVDITN--FEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMD 1601
            + G   +    E +           I+Q   + +P LVF  +RK V+  A      S + 
Sbjct: 364  VLGFPCSTKQSEFKFDLTLNYKIANIIQTYSDGRPTLVFCSTRKGVQQAA------SILT 417

Query: 1602 GDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIK 1661
             D K    +   + ++   ++I++  L+  L++GVGY H G++ +D++V+   F  G + 
Sbjct: 418  KDAKFVMSIEHKQRLQKCANSIKDSKLRDVLQYGVGYHHAGVDISDRKVIENSFLIGDLP 477

Query: 1662 ICY 1664
            + +
Sbjct: 478  VLF 480


>sp|A2PYH4|HFM1_HUMAN Probable ATP-dependent DNA helicase HFM1 OS=Homo sapiens GN=HFM1 PE=2
            SV=2
          Length = 1435

 Score =  327 bits (839), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 252/767 (32%), Positives = 390/767 (50%), Gaps = 62/767 (8%)

Query: 476  LIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQ 535
            L  ++E+P   +  FK     N +QS+ +   L +  N ++CAPTG+GKT V  L I + 
Sbjct: 261  LKAVTEIPAKFRSIFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRL 320

Query: 536  LALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ-Q 594
            L      +      N KIVY+AP+KAL ++   +   +     +  +EL+GD  +    +
Sbjct: 321  LM-----EVPLPWLNIKIVYMAPIKALCSQRFDDWKEKFGPIGLNCKELTGDTVMDDLFE 375

Query: 595  IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVAR--TV 651
            I+   II+TTPEKWD +TRK  D +  QLV+L +IDE+H++ D NRGP LE +V+R  TV
Sbjct: 376  IQHAHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDEVHIVKDENRGPTLEVVVSRMKTV 435

Query: 652  RQIETTKEH------IRLVGLSATLPNYEDVALFLRVNLEKGL-FYFDNSYRPVPLSQQY 704
            + +  T ++      +R V +SAT+PN ED+A +L       +    D S+RPV L +  
Sbjct: 436  QSVSQTLKNTSTAIPMRFVAVSATIPNAEDIAEWLSDGERPAVCLKMDESHRPVKLQKVV 495

Query: 705  IGIQVKKPLQRFQLMNDLCYEKVVAV----AGKHQVLIFVHSRKETAKTARAIRDTALEN 760
            +G         F+    L Y K+ +V    + +   L+F  +RK   + A  +   A   
Sbjct: 496  LGFPCSSNQTEFKFDLTLNY-KIASVIQMYSDQKPTLVFCATRKGVQQAASVLVKDA--- 551

Query: 761  DTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGH 820
                +F+      ++ LQ +   V+ + L+D+L  G A HHAGM   DR++VE  F  G 
Sbjct: 552  ----KFIMTVE-QKQRLQKYAYSVRDSKLRDILKDGAAYHHAGMELSDRKVVEGAFTVGD 606

Query: 821  VQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYG 880
            + VL +T+TLA GVNLPAH V+IK T  Y    G + E S  DI+QM+GRAGRPQ+D+  
Sbjct: 607  LPVLFTTSTLAMGVNLPAHLVVIKSTMHY--AGGLFEEYSETDILQMIGRAGRPQFDTTA 664

Query: 881  EGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYL 940
              +I+T  S    Y+ ++  +  +ES     L + LNAEIVL T+ +   A  WI  T L
Sbjct: 665  TAVIMTRLSTRDKYIQMLACRDTVESSLHRHLIEHLNAEIVLHTITDVNIAVEWIRSTLL 724

Query: 941  YIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLG 1000
            YIR L+NP+ YG A  + K+ I    +  +L       L   +L+K D     F+ T+ G
Sbjct: 725  YIRALKNPSHYGFASGLNKDGIE--AKLQELCLKNLNDLSSLDLIKMDEGVN-FKPTEAG 781

Query: 1001 RIASYYYISHGTIST-YNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKL---L 1056
            R+ ++YYI+  T+   Y    K T+ D  L  L +  +EF  + +R +EK  L  L    
Sbjct: 782  RLMAWYYITFETVKKFYTISGKETLSD--LVTLIAGCKEFLDIQLRINEKKTLNTLNKDP 839

Query: 1057 DRVPI--PVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIV 1114
            +R+ I  P++  ++    K+N L+QA +  + ++  +LT D   I +   R+ R L + V
Sbjct: 840  NRITIRFPMEGRIKTREMKVNCLIQAQLGCIPIQDFALTQDTAKIFRHGSRITRWLSDFV 899

Query: 1115 L--KRGWAQLAEKALNLSKMVTKRMWS----VQTPLRQF-----NGIPNEILMKLEKKDF 1163
               ++ +A L   +L L+K    ++W     V   L +      N I N  L   +K + 
Sbjct: 900  AAQEKKFAVLL-NSLILAKCFRCKLWENSLHVSKQLEKIGITLSNAIVNAGLTSFKKIEE 958

Query: 1164 AWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITR 1210
               R  +L       L R P  G  + + V   PK  L   V+ ITR
Sbjct: 959  TDARELELI------LNRHPPFGTQIKETVMYLPKYELK--VEQITR 997



 Score =  195 bits (495), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 192/348 (55%), Gaps = 22/348 (6%)

Query: 1332 YEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGV- 1390
            + ++++ F +FN IQ++ F  L  TD N ++ APTGSGKT+  E AI R   +     + 
Sbjct: 271  FRSIFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLMEVPLPWLN 330

Query: 1391 MRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD-LKLLEKGQIIISTPEKW 1449
            ++ VY+AP++AL  +R+ DW+ KFG  +G+   ELTG+T MD L  ++   II++TPEKW
Sbjct: 331  IKIVYMAPIKALCSQRFDDWKEKFGP-IGLNCKELTGDTVMDDLFEIQHAHIIMTTPEKW 389

Query: 1450 DALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVEN-------- 1500
            D+++R+W+    VQ V LF+IDE+H++  +  GP LEV+VSRM+ + S  +         
Sbjct: 390  DSMTRKWRDNSLVQLVRLFLIDEVHIVKDENRGPTLEVVVSRMKTVQSVSQTLKNTSTAI 449

Query: 1501 KIRIVALSTSLANAKDLGEWI--GATSHGLFNFPPGVRPVPLEIHIQGVDITN--FEARM 1556
             +R VA+S ++ NA+D+ EW+  G             RPV L+  + G   ++   E + 
Sbjct: 450  PMRFVAVSATIPNAEDIAEWLSDGERPAVCLKMDESHRPVKLQKVVLGFPCSSNQTEFKF 509

Query: 1557 QAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEV 1616
                     +++Q   ++KP LVF  +RK V+  A      S +  D K    +   + +
Sbjct: 510  DLTLNYKIASVIQMYSDQKPTLVFCATRKGVQQAA------SVLVKDAKFIMTVEQKQRL 563

Query: 1617 EPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICY 1664
            + +  ++++  L+  L+ G  Y H G+  +D++VV   F  G + + +
Sbjct: 564  QKYAYSVRDSKLRDILKDGAAYHHAGMELSDRKVVEGAFTVGDLPVLF 611


>sp|P51979|HFM1_YEAST ATP-dependent DNA helicase MER3 OS=Saccharomyces cerevisiae (strain
            ATCC 204508 / S288c) GN=HFM1 PE=1 SV=3
          Length = 1187

 Score =  288 bits (738), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 222/705 (31%), Positives = 361/705 (51%), Gaps = 64/705 (9%)

Query: 474  EKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTIL 533
            +K +  + +P+  +  FK  T+ N++QS  + S   S +N ++ +PTG+GKT +  L IL
Sbjct: 118  KKCLSTTILPDSFRGVFK-FTEFNKMQSEAFPSIYESNENCIISSPTGSGKTVLFELAIL 176

Query: 534  QQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQT-LTR 592
            + +    +D      +N KI+Y+AP K+L  E+  N        ++ V  L+ D + L  
Sbjct: 177  RLIKETNSDT-----NNTKIIYIAPTKSLCYEMYKNWFP--SFVNLSVGMLTSDTSFLET 229

Query: 593  QQIEETQIIVTTPEKWDIITRKSGDRT-YTQLVKLLIIDEIHLLHDNRGPVLESIVARTV 651
            ++ ++  II+TTPEKWD++TR+  D +   +LVKL+++DEIH + + RG  LE I+ R  
Sbjct: 230  EKAKKCNIIITTPEKWDLLTRRWSDYSRLFELVKLVLVDEIHTIKEKRGASLEVILTR-- 287

Query: 652  RQIETTKEHIRLVGLSATLPNYEDVALFLRVN--LEKGLFYFDNSYRPVPLSQQYIG--I 707
              + T  ++IR V LSAT+PN ED+AL+L+ N  L   +  FD SYR V L++   G   
Sbjct: 288  --MNTMCQNIRFVALSATVPNIEDLALWLKTNNELPANILSFDESYRQVQLTKFVYGYSF 345

Query: 708  QVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFL 767
              K   Q+  + N    E +   A    VLIF  +R  T  TA+ +    L N    +  
Sbjct: 346  NCKNDFQKDAIYNSKLIEIIEKHADNRPVLIFCPTRASTISTAKFL----LNNHIFSKSK 401

Query: 768  KEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVST 827
            K  +       + +D +    L + +  G A HHAG++  DR  VE  F  G + +L ST
Sbjct: 402  KRCN------HNPSDKI----LNECMQQGIAFHHAGISLEDRTAVEKEFLAGSINILCST 451

Query: 828  ATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITG 887
            +TLA GVNLPA+ VIIKGT+ +N  +    E S LD++QM+GRAGRPQ++++G  +I+T 
Sbjct: 452  STLAVGVNLPAYLVIIKGTKSWNSSE--IQEYSDLDVLQMIGRAGRPQFETHGCAVIMTD 509

Query: 888  HSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRN 947
                + Y +L++    +ES     L + L AE  L TV + + A NW+  T+ Y+R  +N
Sbjct: 510  SKMKQTYENLIHGTDVLESSLHLNLIEHLAAETSLETVYSIETAVNWLRNTFFYVRFGKN 569

Query: 948  PALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKY---DRKSGYFQVTDLGRIAS 1004
            PA Y    EV +         + +      +LD   LVK    D  +G ++ T  G   +
Sbjct: 570  PAAY---QEVNRYVSFHSVEDSQINQFCQYLLD--TLVKVKIIDISNGEYKSTAYGNAMT 624

Query: 1005 YYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEK-----MELAKLLDRV 1059
             +YIS  ++  +  + K  +    +  L + SEEF  + VR +EK     + L+ LL + 
Sbjct: 625  RHYISFESMKQF-INAKKFLSLQGILNLLATSEEFSVMRVRHNEKKLFKEINLSPLL-KY 682

Query: 1060 PIPVKES----LEEPSAKINVLLQAYISQLKL---EGLS-----LTSDMVFITQSAGRLL 1107
            P   ++     ++  S K+++L+Q  +  L+    EG S     L  D   + +   RLL
Sbjct: 683  PFLTEKKQSQIIDRVSQKVSLLIQYELGGLEFPSYEGASKLHQTLVQDKFLVFRHCFRLL 742

Query: 1108 RALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTP--LRQFNGI 1150
            + + +  +++      +  L L + +    W   TP  LRQ   I
Sbjct: 743  KCMVDTFIEKSDGTSLKNTLFLLRSLNGHCWE-NTPMVLRQLKTI 786



 Score =  161 bits (408), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 101/332 (30%), Positives = 168/332 (50%), Gaps = 28/332 (8%)

Query: 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILR-NHQKASETGVMRAVYIA 1397
            F  FN +Q++ F  +Y +++N ++++PTGSGKT+  E AILR   +  S+T   + +YIA
Sbjct: 136  FTEFNKMQSEAFPSIYESNENCIISSPTGSGKTVLFELAILRLIKETNSDTNNTKIIYIA 195

Query: 1398 PLEALAKERYRDWEIKFGQGLGMRVVELTGETA-MDLKLLEKGQIIISTPEKWDALSRRW 1456
            P ++L  E Y++W   F   + + V  LT +T+ ++ +  +K  III+TPEKWD L+RRW
Sbjct: 196  PTKSLCYEMYKNW---FPSFVNLSVGMLTSDTSFLETEKAKKCNIIITTPEKWDLLTRRW 252

Query: 1457 KQ-RKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAK 1515
                +  + V L ++DE+H I  + G  LEVI++RM  +       IR VALS ++ N +
Sbjct: 253  SDYSRLFELVKLVLVDEIHTIKEKRGASLEVILTRMNTMCQN----IRFVALSATVPNIE 308

Query: 1516 DLGEWIGATSH---GLFNFPPGVRPVPLEIHIQGVDITNFEARMQ--AMTKPTFTAIVQH 1570
            DL  W+   +     + +F    R V L   + G    N +   Q  A+       I++ 
Sbjct: 309  DLALWLKTNNELPANILSFDESYRQVQLTKFVYGYSF-NCKNDFQKDAIYNSKLIEIIEK 367

Query: 1571 AKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKA 1630
              + +P L+F P+R     TA  L+        +K                N  +++L  
Sbjct: 368  HADNRPVLIFCPTRASTISTAKFLLNNHIFSKSKKRCN------------HNPSDKILNE 415

Query: 1631 TLRHGVGYLHEGLNKTDQEVVSALFEAGKIKI 1662
             ++ G+ + H G++  D+  V   F AG I I
Sbjct: 416  CMQQGIAFHHAGISLEDRTAVEKEFLAGSINI 447


>sp|Q5UYM9|HELS_HALMA Putative ski2-type helicase OS=Haloarcula marismortui (strain ATCC
           43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rrnAC2876
           PE=3 SV=1
          Length = 799

 Score =  168 bits (425), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 125/430 (29%), Positives = 210/430 (48%), Gaps = 54/430 (12%)

Query: 482 MPEWAQPAFK--GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALN 539
           +PEW     +  G+ +L   Q+   ++ ++  +N++   PT +GKT +A L +L  +A  
Sbjct: 9   VPEWLPDHLRDDGIEELYPPQAEAVEAGVTEGENLVASIPTASGKTLIAELAMLSSVA-- 66

Query: 540 RNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQ 599
                       K +Y+ P++AL +E   +     + Y + +   +G+       + +  
Sbjct: 67  ---------RGGKALYIVPLRALASEKQADF-EEFEQYGLDIGVSTGNYESEGGWLADKD 116

Query: 600 IIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDN-RGPVLESIVARTVRQIETTK 658
           I+V T EK D + R   D  + + +  ++ DE+HL+ D  RGP LE  +A+  R      
Sbjct: 117 IVVATSEKVDSLVRN--DAPWIEDLTCVVTDEVHLVDDGERGPTLEVTLAKLRR----LN 170

Query: 659 EHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL----- 713
             ++ V LSAT+ N E +A +L   L       D+ +RP+ L +   G+   + L     
Sbjct: 171 PDLQTVALSATIGNAEALATWLDAGL------VDSDWRPIDLQK---GVHYGQALHLEDG 221

Query: 714 --QRFQLMNDLCYEKVV---AVAGKHQVLIFVHSRKETAKTARAIRDTAL------ENDT 762
             QR  + N+      +    +      L+FV+SR+     A  + +T        E D 
Sbjct: 222 SQQRLSVQNNEKQTAAIVRDTLEDDGSTLVFVNSRRNAEAAAGRLANTVRPHLSTEERDQ 281

Query: 763 LGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQ 822
           L    +E       ++  +D   S+DL D +  G A HHAG++RG R+LVED F D  V+
Sbjct: 282 LADIAEE-------IRDVSDTETSDDLADAVADGAAFHHAGLSRGHRELVEDAFRDRLVK 334

Query: 823 VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 882
           V+ +T TLA GVN P+  V+++  + Y+   G    LS L++ QM+GRAGRP  D YGE 
Sbjct: 335 VVCATPTLAAGVNTPSRRVVVRDWRRYDGSAGGMAPLSVLEVHQMMGRAGRPGLDPYGEA 394

Query: 883 III-TGHSEL 891
           ++I + H E+
Sbjct: 395 VLIASSHDEV 404



 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 163/345 (47%), Gaps = 48/345 (13%)

Query: 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397
            G +   P Q +         +N++ + PT SGKT+ +E A+L +  +       +A+YI 
Sbjct: 21   GIEELYPPQAEAVEAGVTEGENLVASIPTASGKTLIAELAMLSSVARGG-----KALYIV 75

Query: 1398 PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWK 1457
            PL ALA E+  D+E +F Q  G+ +   TG    +   L    I+++T EK D+L R   
Sbjct: 76   PLRALASEKQADFE-EFEQ-YGLDIGVSTGNYESEGGWLADKDIVVATSEKVDSLVR--N 131

Query: 1458 QRKYVQQVSLFIIDELHLI-GGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKD 1516
               +++ ++  + DE+HL+  G+ GP LEV ++++R    ++   ++ VALS ++ NA+ 
Sbjct: 132  DAPWIEDLTCVVTDEVHLVDDGERGPTLEVTLAKLR----RLNPDLQTVALSATIGNAEA 187

Query: 1517 LGEWIGATSHGLFNFPPGVRPVPLE--------IHI-----QGVDITNFEARMQAMTKPT 1563
            L  W+ A   GL +     RP+ L+        +H+     Q + + N E +  A+ + T
Sbjct: 188  LATWLDA---GLVD--SDWRPIDLQKGVHYGQALHLEDGSQQRLSVQNNEKQTAAIVRDT 242

Query: 1564 FTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMT-----YSSMDGDQKSAFLLWPAEEVEP 1618
                    +++   LVFV SR+     A  L        S+ + DQ +      AEE+  
Sbjct: 243  L-------EDDGSTLVFVNSRRNAEAAAGRLANTVRPHLSTEERDQLADI----AEEIRD 291

Query: 1619 FIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKIC 1663
              D    + L   +  G  + H GL++  +E+V   F    +K+ 
Sbjct: 292  VSDTETSDDLADAVADGAAFHHAGLSRGHRELVEDAFRDRLVKVV 336


>sp|A6UN73|HELS_METVS Putative ski2-type helicase OS=Methanococcus vannielii (strain SB /
            ATCC 35089 / DSM 1224) GN=Mevan_0030 PE=3 SV=1
          Length = 751

 Score =  167 bits (423), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 180/634 (28%), Positives = 310/634 (48%), Gaps = 108/634 (17%)

Query: 492  GMTQLNRVQSRVYKSAL-SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
            G+ +L   Q +V +  L   + N L+C PT +GKT +  + +L  +      D ++N + 
Sbjct: 12   GIEELRPPQKKVIEEGLLDKSKNFLICIPTASGKTLIGEMALLNHVL-----DENYNLTG 66

Query: 551  YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
             K +++ P+KAL +E       + + Y +KV    GD   T++ + +  II+TT EK D 
Sbjct: 67   KKGLFIVPLKALASEKFDEFQKKYETYGIKVGMSIGDYD-TKEDLSKYNIIITTSEKLDS 125

Query: 611  ITRKSGDRTYTQLVKLLIIDEIHLLHDN-RGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
            + R + +  + + + L +IDEIHL+ DN RG  LE I+ + ++ I       ++VGLSAT
Sbjct: 126  LMRHNIE--WIKDLSLAVIDEIHLIGDNERGGTLEVILTK-LKNINA-----QIVGLSAT 177

Query: 670  LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQ--------QYIGIQ--VKKPLQRFQLM 719
            + N E++A +L   L        + +RPV L +         YI  Q   KK  +  + +
Sbjct: 178  VGNPEEIANWLNAKL------VTDEWRPVELKKGIYLENEINYINNQDSQKKSFKAVKSI 231

Query: 720  --NDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKE------DS 771
              N+L    V +V  K   LIF +S++     ++           L ++L +      +S
Sbjct: 232  SRNNLTDLIVDSVNEKGSCLIFCNSKRNAVGESKK--------HNLTKYLSKAELNDLNS 283

Query: 772  VSREIL---QSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTA 828
            +S EIL   ++ T+  KS  L + +  G A HHAG+T   R+ VE+ F +  ++V+  T 
Sbjct: 284  ISEEILSILETPTETCKS--LSECIKKGVAFHHAGLTYQHRKAVEEGFRNKVIKVICCTP 341

Query: 829  TLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888
            TL+ G+NLP    II+  + Y+  +    ++  L+I Q +GRAGRP  D YGEGII+  +
Sbjct: 342  TLSAGLNLPCRRAIIRDIRRYS--QNGLIDIPKLEIHQCIGRAGRPGLDPYGEGIILAKN 399

Query: 889  SE--LRYYLSLMNQQLPIESQFVSKLADQLNAEI-VLGT-----VQNAKEACNWIGYTYL 940
             +   + +L+L     P+E+ + SKL++Q    + +LG      +++  E  N+I  T+ 
Sbjct: 400  EKDVEKAFLALTG---PLENIY-SKLSNQKVLRVHILGLIATLEIKSTSELINFIKNTF- 454

Query: 941  YIRMLRNPALYGLAP---------------EVLKEDITLGERRADLVHTAATILDRNNLV 985
            Y     N  L+G+                 E L +D T  + R        T+ + NNLV
Sbjct: 455  YAHQYGN--LHGVLTNVSKVVEFLEKNKFIETLDDDFTPKKNRV----LELTLDNSNNLV 508

Query: 986  KYDRK------SGYFQVTDLGRIASYYYI----SHGTISTYNEHLKPTMGDIE------- 1028
               ++      +  F+ T+LG+  S  YI    S   I   NE LK  + D++       
Sbjct: 509  LDSKRRMDTLTNLSFKPTNLGKRVSELYIDPLSSEIIIEGLNE-LKEKINDMDRSNIDQY 567

Query: 1029 LCRLFSLSEEFK-YVTVRQDEKMELAKLLDRVPI 1061
            +  + S + E +  + V+ DE++EL + +D++ I
Sbjct: 568  IFYIISKATEMRPLLRVKMDEELELIQEMDKLKI 601



 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 173/358 (48%), Gaps = 63/358 (17%)

Query: 1338 GFKHFNPIQTQVFTV-LYNTDDNVLVAAPTGSGKTICSEFAILRNH---QKASETGVMRA 1393
            G +   P Q +V    L +   N L+  PT SGKT+  E A+L NH   +  + TG  + 
Sbjct: 12   GIEELRPPQKKVIEEGLLDKSKNFLICIPTASGKTLIGEMALL-NHVLDENYNLTG-KKG 69

Query: 1394 VYIAPLEALAKERYRDWEIK---FGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWD 1450
            ++I PL+ALA E++ +++ K   +G  +GM + +   +T  D   L K  III+T EK D
Sbjct: 70   LFIVPLKALASEKFDEFQKKYETYGIKVGMSIGDY--DTKED---LSKYNIIITTSEKLD 124

Query: 1451 ALSRRWKQRKYVQQVSLFIIDELHLIG-GQGGPVLEVIVSRMRYIASQVENKIRIVALST 1509
            +L R     ++++ +SL +IDE+HLIG  + G  LEVI+++++ I +Q      IV LS 
Sbjct: 125  SLMRH--NIEWIKDLSLAVIDEIHLIGDNERGGTLEVILTKLKNINAQ------IVGLSA 176

Query: 1510 SLANAKDLGEWIGATSHGLFNFPPGVRPVPLE-----------IHIQGVDITNFEARMQA 1558
            ++ N +++  W+ A            RPV L+           I+ Q     +F+A +++
Sbjct: 177  TVGNPEEIANWLNAKL-----VTDEWRPVELKKGIYLENEINYINNQDSQKKSFKA-VKS 230

Query: 1559 MTKPTFTAIVQHAKNEK-PALVFVPSRKYV-----------RLTAVDLMTYSSMDGDQKS 1606
            +++   T ++  + NEK   L+F  S++              L+  +L   +S+  ++  
Sbjct: 231  ISRNNLTDLIVDSVNEKGSCLIFCNSKRNAVGESKKHNLTKYLSKAELNDLNSI-SEEIL 289

Query: 1607 AFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIK-IC 1663
            + L  P E  +          L   ++ GV + H GL    ++ V   F    IK IC
Sbjct: 290  SILETPTETCKS---------LSECIKKGVAFHHAGLTYQHRKAVEEGFRNKVIKVIC 338


>sp|A3MSA1|HELS_PYRCJ Putative ski2-type helicase OS=Pyrobaculum calidifontis (strain JCM
           11548 / VA1) GN=Pcal_0078 PE=3 SV=1
          Length = 708

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 138/420 (32%), Positives = 221/420 (52%), Gaps = 38/420 (9%)

Query: 477 IKISEMPEWAQPAF----KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTI 532
           +++SE+P  A+       +G+ +L   Q    ++ +    ++LLC  T +GK+ +A    
Sbjct: 1   MEVSELPLDARLIAVLKERGVGRLFPPQVEAVRAGIFDGRSVLLCTATASGKSLLA---- 56

Query: 533 LQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR 592
            +  A+    +G         +Y  P+KAL  E + + S    +  VKV   +GD     
Sbjct: 57  -EVAAVKAGLEGRMA------LYAVPLKALAYEKLVHFSYYRGL--VKVGVSTGDFDSDD 107

Query: 593 QQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTV 651
           +++ E  ++V T EK D + R   +  +  LV ++++DEIH L D  RGPVLESIVA+ +
Sbjct: 108 RRLHEFDVVVVTYEKLDSLLRHRPN--WLGLVGVVVVDEIHYLGDPRRGPVLESIVAK-L 164

Query: 652 RQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ-YIGIQVK 710
           R +    + I   GLSAT+ N  +VA +L   L       ++S+RPVPL +  Y G  ++
Sbjct: 165 RHLGLKTQFI---GLSATVGNAGEVAAWLGARL------VESSWRPVPLREGVYHGGVIR 215

Query: 711 ---KPLQRFQLMNDLCYEKVV-AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRF 766
                +QR     D      V AVAG  Q L+F +SR  T + A+A+         + R 
Sbjct: 216 FSDGSMQRVNAPGDAEVALAVDAVAGGGQALVFTNSRSSTVRLAKAVAKAMEAAGLVPRG 275

Query: 767 LKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVS 826
            K  +++ E+L++ +  +   +L DL+  G A H+AG+    R+LVED F  G ++V+VS
Sbjct: 276 AK--ALAEEVLKASSSKIIGRELADLVARGVAFHNAGLELEVRRLVEDGFRRGLLKVVVS 333

Query: 827 TATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT 886
           T TLA GVNLPA  V++   + ++P  G   E+  L+  QM GRAGRP  D YGE +++ 
Sbjct: 334 TTTLAAGVNLPARRVVVADYERFDPALGR-EEIPVLEYRQMAGRAGRPGLDPYGEAVLVA 392



 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 151/334 (45%), Gaps = 28/334 (8%)

Query: 1337 QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI 1396
            +G     P Q +          +VL+   T SGK++ +E A +    KA   G M A+Y 
Sbjct: 19   RGVGRLFPPQVEAVRAGIFDGRSVLLCTATASGKSLLAEVAAV----KAGLEGRM-ALYA 73

Query: 1397 APLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRW 1456
             PL+ALA E+   +   + +GL ++V   TG+   D + L +  +++ T EK D+L R  
Sbjct: 74   VPLKALAYEKLVHF--SYYRGL-VKVGVSTGDFDSDDRRLHEFDVVVVTYEKLDSLLR-- 128

Query: 1457 KQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAK 1515
             +  ++  V + ++DE+H +G  + GPVLE IV+++R++      K + + LS ++ NA 
Sbjct: 129  HRPNWLGLVGVVVVDEIHYLGDPRRGPVLESIVAKLRHLGL----KTQFIGLSATVGNAG 184

Query: 1516 DLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNF-EARMQAMTKPTFTAI---VQHA 1571
            ++  W+GA            RPVPL   +    +  F +  MQ +  P    +   V   
Sbjct: 185  EVAAWLGARL-----VESSWRPVPLREGVYHGGVIRFSDGSMQRVNAPGDAEVALAVDAV 239

Query: 1572 KNEKPALVFVPSR-KYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEV-EPFIDNIQEEMLK 1629
                 ALVF  SR   VRL         +     + A  L  AEEV +     I    L 
Sbjct: 240  AGGGQALVFTNSRSSTVRLAKAVAKAMEAAGLVPRGAKAL--AEEVLKASSSKIIGRELA 297

Query: 1630 ATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKIC 1663
              +  GV + + GL    + +V   F  G +K+ 
Sbjct: 298  DLVARGVAFHNAGLELEVRRLVEDGFRRGLLKVV 331


>sp|Q9V0A9|HELS_PYRAB Putative ski2-type helicase OS=Pyrococcus abyssi (strain GE5 /
           Orsay) GN=PYRAB08810 PE=3 SV=1
          Length = 715

 Score =  165 bits (417), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 129/405 (31%), Positives = 209/405 (51%), Gaps = 40/405 (9%)

Query: 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
           +G+ +L   Q+    S +   +N+L+  PT +GKT +A + I  +L     ++G      
Sbjct: 19  RGIEELYPPQAEALTSGVLEGENLLVAIPTASGKTLIAEIAIANKLL----EEGG----- 69

Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
            K VY+ P+KAL  E      +  +   +KV   +GD     + + +  II+ T EK+D 
Sbjct: 70  -KAVYIVPLKALAEEKFREFKD-WERLGLKVAMATGDYDSKDEWLGKYDIIIATAEKFDS 127

Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
           + R     ++ + VK+L+IDEIHL+   +RG  LE I+ + + + +       ++GLSAT
Sbjct: 128 LLRHGS--SWIRDVKMLVIDEIHLIGSRDRGATLEFIITQMLGRAQ-------IIGLSAT 178

Query: 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ--YIGIQVKKP--LQRFQLMNDLCYE 725
           + N E++A +L   L        + +RPV L +   Y G    +    +R+    +L Y+
Sbjct: 179 IGNPEELAEWLNAKL------IRSDWRPVKLRKGVFYQGFVFWEDGGSERYNSWEELVYD 232

Query: 726 KVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVK 785
              AV      L+FV+ R++  KTA  +       + L R  KE    RE+ +S  +   
Sbjct: 233 ---AVKKGKGALVFVNMRRKAEKTALELAKKV--KNYLDR--KELRELRELAESLEENPT 285

Query: 786 SNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKG 845
           +  L   L  G A HHAG+ R +R LVED F  G ++V+V+T TL+ G+N PA  VII+ 
Sbjct: 286 NEKLAKALLSGVAFHHAGLGRDERVLVEDNFRKGLIKVVVATPTLSAGINTPAFRVIIRD 345

Query: 846 TQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890
           T  Y+  +     +  L++ QM+GRAGRP+YD  GE II++   E
Sbjct: 346 TWRYS--EFGMERIPVLEVQQMMGRAGRPRYDEVGEAIIVSTTEE 388



 Score =  124 bits (310), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 110/338 (32%), Positives = 163/338 (48%), Gaps = 43/338 (12%)

Query: 1337 QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI 1396
            +G +   P Q +  T      +N+LVA PT SGKT+ +E AI     K  E G  +AVYI
Sbjct: 19   RGIEELYPPQAEALTSGVLEGENLLVAIPTASGKTLIAEIAI---ANKLLEEG-GKAVYI 74

Query: 1397 APLEALAKERYR---DWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALS 1453
             PL+ALA+E++R   DWE      LG++V   TG+     + L K  III+T EK+D+L 
Sbjct: 75   VPLKALAEEKFREFKDWE-----RLGLKVAMATGDYDSKDEWLGKYDIIIATAEKFDSLL 129

Query: 1454 RRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512
            R      +++ V + +IDE+HLIG +  G  LE I+++M         + +I+ LS ++ 
Sbjct: 130  RH--GSSWIRDVKMLVIDEIHLIGSRDRGATLEFIITQML-------GRAQIIGLSATIG 180

Query: 1513 NAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNF-------EARMQAMTKPTFT 1565
            N ++L EW+ A            RPV L    +GV    F         R  +  +  + 
Sbjct: 181  NPEELAEWLNAKL-----IRSDWRPVKLR---KGVFYQGFVFWEDGGSERYNSWEELVYD 232

Query: 1566 AIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQE 1625
            A+    K  K ALVFV  R+    TA++L        D+K    L   E  E   +N   
Sbjct: 233  AV----KKGKGALVFVNMRRKAEKTALELAKKVKNYLDRKELREL--RELAESLEENPTN 286

Query: 1626 EMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKIC 1663
            E L   L  GV + H GL + ++ +V   F  G IK+ 
Sbjct: 287  EKLAKALLSGVAFHHAGLGRDERVLVEDNFRKGLIKVV 324


>sp|Q97VY9|HELS_SULSO Putative ski2-type helicase OS=Sulfolobus solfataricus (strain ATCC
           35092 / DSM 1617 / JCM 11322 / P2) GN=SSO2462 PE=1 SV=1
          Length = 708

 Score =  164 bits (416), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 145/447 (32%), Positives = 217/447 (48%), Gaps = 61/447 (13%)

Query: 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
           +G+ +LN  Q+   K  L   + +LL +PTG+GKT +A + I+  L  N           
Sbjct: 19  RGIKKLNPPQTEAVKKGLLDGNRLLLTSPTGSGKTLIAEMGIISFLLKNGG--------- 69

Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
            K +YV P++AL  E      +  +    KV   SGD       ++   II+TT EK D 
Sbjct: 70  -KAIYVTPLRALTNEKYLTFKD-WESIGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDS 127

Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
           + R   D  +       ++DE+H L+D  RGPV+ES+  R  R+         L+ LSAT
Sbjct: 128 LWRHRPD--WLNEANYFVLDELHYLNDPERGPVVESVTIRAKRR--------NLLALSAT 177

Query: 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVV- 728
           + NY+ +A +L      G      ++RPVPL +  +  + KK  +   L  D    KV  
Sbjct: 178 ISNYKQIAKWL------GAEPVATNWRPVPLMEGVMYPERKKK-EYTILFRDNTARKVHG 230

Query: 729 ----------AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQ 778
                     +++   QVL+F +SRK    TA  I      N      L E ++S EIL+
Sbjct: 231 DDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKI-----ANYMNFVSLDEKAIS-EILK 284

Query: 779 SHTDMVKSND-----LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWG 833
              D+ +        LK L+  G A HHAG+++  R ++E+ F    ++V+V+T TLA G
Sbjct: 285 QLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDIIEESFRKRKIKVIVATPTLAAG 344

Query: 834 VNLPAHTVIIKGTQIYNPE-KGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE-- 890
           VNLPA TVII     +N +  G + E+  ++  QM GRAGRP +D  GE II+    E  
Sbjct: 345 VNLPARTVIIGDIYRFNRKIVGYYDEIPVMEYKQMSGRAGRPGFDQIGESIIVVRDKEDV 404

Query: 891 ----LRYYLSLMNQQLPIESQFVSKLA 913
                +Y LS +    PIES+  S+ A
Sbjct: 405 DRVFKKYILSDVE---PIESKLGSERA 428



 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 165/350 (47%), Gaps = 56/350 (16%)

Query: 1337 QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI 1396
            +G K  NP QT+         + +L+ +PTGSGKT+ +E  I+    K       +A+Y+
Sbjct: 19   RGIKKLNPPQTEAVKKGLLDGNRLLLTSPTGSGKTLIAEMGIISFLLKNGG----KAIYV 74

Query: 1397 APLEALAKERY---RDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALS 1453
             PL AL  E+Y   +DWE      +G +V   +G+   D   L+   III+T EK D+L 
Sbjct: 75   TPLRALTNEKYLTFKDWE-----SIGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSL- 128

Query: 1454 RRWKQR-KYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQVENKIRIVALSTSL 1511
              W+ R  ++ + + F++DELH +   + GPV+E +  R +        +  ++ALS ++
Sbjct: 129  --WRHRPDWLNEANYFVLDELHYLNDPERGPVVESVTIRAK--------RRNLLALSATI 178

Query: 1512 ANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHA 1571
            +N K + +W+GA            RPVPL   ++GV     + +   +     TA   H 
Sbjct: 179  SNYKQIAKWLGAEP-----VATNWRPVPL---MEGVMYPERKKKEYTILFRDNTARKVHG 230

Query: 1572 KNEKPA------------LVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPF 1619
             +   A            LVF  SRK    TA+ +  Y +     + A       E+   
Sbjct: 231  DDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDEKAI-----SEILKQ 285

Query: 1620 IDNIQE------EMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKIC 1663
            +D+I+E      E+LK+ +  GV Y H GL+K  ++++   F   KIK+ 
Sbjct: 286  LDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDIIEESFRKRKIKVI 335


>sp|Q3IU46|HELS_NATPD Putative ski2-type helicase OS=Natronomonas pharaonis (strain DSM
            2160 / ATCC 35678) GN=NP_0492A PE=3 SV=1
          Length = 747

 Score =  164 bits (416), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 150/548 (27%), Positives = 258/548 (47%), Gaps = 61/548 (11%)

Query: 478  KISEMPEWAQPAFK--GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQ 535
            ++S +P W     +  G+  L   Q+    + ++  ++++   PT +GKT VA L +L  
Sbjct: 5    EVSGVPPWFADHLREEGIESLYPPQAAAVDAGVADGESLVASVPTASGKTLVAQLAMLS- 63

Query: 536  LALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQI 595
             A++R             +Y+ P++AL +E     +   + Y + V   +G    T + +
Sbjct: 64   -AIDRGG---------TALYIVPLRALASEKREEFAA-FEEYGLSVGVTTGSYEDTGEWL 112

Query: 596  EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQI 654
             +  IIV T EK D + R      +   +  ++ DE+HL+ D +RGP LE  +A+  R  
Sbjct: 113  ADKDIIVATSEKVDSLVRNGA--PWIDDLDCVVADEVHLVDDEHRGPTLEVTLAKLRR-- 168

Query: 655  ETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQ-----QYI---- 705
                 ++++V LSAT+ N  ++A +L   L       D+S+RP+ L +     Q +    
Sbjct: 169  --VNPNLQVVALSATVGNAGEMAEWLDAEL------VDSSWRPIELRKGVHYGQALHFGD 220

Query: 706  GIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGR 765
            G Q + P+QR +   +    + +   G    L+FV+SR+     A+ +  T ++      
Sbjct: 221  GTQQELPVQRTEKPTEAVVRETLDEGGS--TLVFVNSRRNAEGAAKRLAKTTVDGLDADE 278

Query: 766  FLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLV 825
                 S++ EI ++ +D   S+DL D +  G A HHAG +   R LVED F D  ++ + 
Sbjct: 279  RAALSSLAEEI-RAVSDTETSDDLADCVEQGAAFHHAGCSSEHRSLVEDAFRDRLIKTIC 337

Query: 826  STATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885
            +T TLA GVN PA  V+++  + Y+ + G    LS L++ QM+GRAGRP  D YGE +++
Sbjct: 338  ATPTLAAGVNTPARRVVVRDWRRYSGDAGGMQPLSVLEVHQMMGRAGRPGRDPYGEAVLL 397

Query: 886  T-GHSELRYYLS--LMNQQLPIESQFVSK--LADQLNAEIVLGTVQNAKEACNWIGYTYL 940
               H EL   L   +     P+ES+   +  +   L A +  G   +     +++  T L
Sbjct: 398  ADSHDELDELLDRYVWADPEPVESKLAREPSMRTHLLATVASGFADSRSALLSFLDRT-L 456

Query: 941  YIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLG 1000
            Y    R    +G   + L+           +V T  + L+ N  +  DR     + TDLG
Sbjct: 457  YATQYR----HGDGEDNLER----------VVDTTLSYLETNGFI--DRDGDAIEATDLG 500

Query: 1001 RIASYYYI 1008
               S  Y+
Sbjct: 501  HTVSRLYL 508



 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 151/337 (44%), Gaps = 29/337 (8%)

Query: 1337 QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI 1396
            +G +   P Q           ++++ + PT SGKT+ ++ A+L    +        A+YI
Sbjct: 20   EGIESLYPPQAAAVDAGVADGESLVASVPTASGKTLVAQLAMLSAIDRGG-----TALYI 74

Query: 1397 APLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRW 1456
             PL ALA E+  ++      GL + V   TG      + L    II++T EK D+L R  
Sbjct: 75   VPLRALASEKREEFAAFEEYGLSVGVT--TGSYEDTGEWLADKDIIVATSEKVDSLVR-- 130

Query: 1457 KQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLANAK 1515
                ++  +   + DE+HL+  +  GP LEV ++++R    +V   +++VALS ++ NA 
Sbjct: 131  NGAPWIDDLDCVVADEVHLVDDEHRGPTLEVTLAKLR----RVNPNLQVVALSATVGNAG 186

Query: 1516 DLGEWIGATSHGLFNFPPGVRPVPLE--IH----IQGVDITNFEARMQAMTKPTFTAIVQ 1569
            ++ EW+ A            RP+ L   +H    +   D T  E  +Q   KPT   + +
Sbjct: 187  EMAEWLDAEL-----VDSSWRPIELRKGVHYGQALHFGDGTQQELPVQRTEKPTEAVVRE 241

Query: 1570 HAKNEKPALVFVPSRKYVRLTAVDL--MTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEM 1627
                    LVFV SR+     A  L   T   +D D+++A L   AEE+    D    + 
Sbjct: 242  TLDEGGSTLVFVNSRRNAEGAAKRLAKTTVDGLDADERAA-LSSLAEEIRAVSDTETSDD 300

Query: 1628 LKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIK-IC 1663
            L   +  G  + H G +   + +V   F    IK IC
Sbjct: 301  LADCVEQGAAFHHAGCSSEHRSLVEDAFRDRLIKTIC 337


>sp|Q974S1|HELS_SULTO Putative ski2-type helicase OS=Sulfolobus tokodaii (strain DSM
           16993 / JCM 10545 / NBRC 100140 / 7) GN=STK_05900 PE=3
           SV=1
          Length = 704

 Score =  164 bits (415), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 144/445 (32%), Positives = 214/445 (48%), Gaps = 58/445 (13%)

Query: 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
           +G+  LN  QS   +  L     +L+ +PT +GKT +A L ++  L L++          
Sbjct: 22  RGIRTLNPPQSEAIRKGLLDGKRLLVTSPTASGKTLIAELGMINYL-LSKGG-------- 72

Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
            K +Y+ P++AL  E      +  +   +K    SGD       +E   IIVTT EK D 
Sbjct: 73  -KAIYITPLRALTNEKYNTFKD-WETLGIKTGMTSGDYDTDDAWLENYDIIVTTYEKLDS 130

Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
           + R      +   V   ++DE H L+D  RGP +ES+  R        K+   ++GLSAT
Sbjct: 131 LWRHKA--KWLNEVSYFVLDEFHYLNDPERGPTVESVAIRA-------KKRGIVLGLSAT 181

Query: 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI-----GIQV--KKPLQRFQLMNDL 722
           + N +++A +L   L         ++RPVPL +  I     G  V  K    R    +D 
Sbjct: 182 ISNGKEIANWLNAEL------VATNWRPVPLKEGIIYPEKKGFVVVYKDNTSRKVYGDDA 235

Query: 723 CYEKVVAVAGKH-QVLIFVHSRKETAKTARAIRD----TALENDTL---GRFLKE--DSV 772
                + +  K  QVL+F  SRK    TAR I        LE+  L    R +KE  D+ 
Sbjct: 236 IIAYTLDIVSKGGQVLVFRSSRKLAENTARKIVQYMNFVKLEDKKLLEIARKIKEVEDAG 295

Query: 773 SREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAW 832
           S E            DL +L+  G A HHAG+++G R ++E  F D  ++V+V+T TLA 
Sbjct: 296 SNE----------KEDLYNLVLRGVAYHHAGLSKGLRDIIESSFRDRILKVIVATPTLAA 345

Query: 833 GVNLPAHTVIIKGTQIYNPEKGAWTELSP-LDIMQMLGRAGRPQYDSYGEGIIITGH--- 888
           GVNLPA  V+I     YN +   + +L P +D  QM GRAGRP +D  GE +++  +   
Sbjct: 346 GVNLPARAVVIGDIYRYNRKVVGYMDLIPVMDYKQMSGRAGRPGFDENGEAVVVVRNKRE 405

Query: 889 SELRYYLSLMNQQLPIESQFVSKLA 913
           +E  Y   LM+   PIES+  S+ A
Sbjct: 406 AEKVYERYLMSDVEPIESKLGSESA 430



 Score =  104 bits (260), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 162/342 (47%), Gaps = 41/342 (11%)

Query: 1337 QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI 1396
            +G +  NP Q++           +LV +PT SGKT+ +E  ++  +   S+ G  +A+YI
Sbjct: 22   RGIRTLNPPQSEAIRKGLLDGKRLLVTSPTASGKTLIAELGMI--NYLLSKGG--KAIYI 77

Query: 1397 APLEALAKERY---RDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALS 1453
             PL AL  E+Y   +DWE      LG++    +G+   D   LE   II++T EK D+L 
Sbjct: 78   TPLRALTNEKYNTFKDWET-----LGIKTGMTSGDYDTDDAWLENYDIIVTTYEKLDSL- 131

Query: 1454 RRWKQR-KYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQVENKIRIVALSTSL 1511
              W+ + K++ +VS F++DE H +   + GP +E +  R +        +  ++ LS ++
Sbjct: 132  --WRHKAKWLNEVSYFVLDEFHYLNDPERGPTVESVAIRAK-------KRGIVLGLSATI 182

Query: 1512 ANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTF---TAIV 1568
            +N K++  W+ A            RPVPL+  I   +   F    +  T        AI+
Sbjct: 183  SNGKEIANWLNAEL-----VATNWRPVPLKEGIIYPEKKGFVVVYKDNTSRKVYGDDAII 237

Query: 1569 QH----AKNEKPALVFVPSRKYVRLTA---VDLMTYSSMDGDQKSAFLLWPAEEVEPFID 1621
             +           LVF  SRK    TA   V  M +  ++ D+K   +    +EVE    
Sbjct: 238  AYTLDIVSKGGQVLVFRSSRKLAENTARKIVQYMNFVKLE-DKKLLEIARKIKEVEDAGS 296

Query: 1622 NIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKIC 1663
            N +E++    LR GV Y H GL+K  ++++ + F    +K+ 
Sbjct: 297  NEKEDLYNLVLR-GVAYHHAGLSKGLRDIIESSFRDRILKVI 337


>sp|Q9HMV6|HELS_HALSA Putative ski2-type helicase OS=Halobacterium salinarum (strain ATCC
            700922 / JCM 11081 / NRC-1) GN=VNG_2368G PE=3 SV=1
          Length = 783

 Score =  164 bits (414), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 142/551 (25%), Positives = 248/551 (45%), Gaps = 54/551 (9%)

Query: 491  KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
            +G+ +L   Q+   +  ++   N++   PT +GKT +A L +L  +A    D  +F+  +
Sbjct: 20   EGVEELYPPQAEAVERGVTEGANLVASVPTASGKTLIAQLAMLSAIA-EGGDSPTFS-GD 77

Query: 551  YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
               +Y+ P++AL  E         + + + V   +G+      ++ +  I+V T EK D 
Sbjct: 78   GTALYIVPLRALAGEKAQEFEA-FERFGLSVGVSTGNYERDGARLADNDIVVATSEKVDS 136

Query: 611  ITRKSGDRTYTQLVKLLIIDEIHLLHDN-RGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
            + R      +   +  ++ DE+HL+ D+ RGP LE  +A+  +Q+      +++V LSAT
Sbjct: 137  LVRNGA--GWIDDLSCVVADEVHLVDDDHRGPTLEVTLAKLRQQVA----DLQVVALSAT 190

Query: 670  LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQ-------RFQLMNDL 722
            + N  ++A +L   L       D+ +RP+ L     G+   + L           + +  
Sbjct: 191  VGNAGELAAWLDAEL------VDSDWRPIELR---TGVHYGQSLHYDDGTQAELSVGSGS 241

Query: 723  CYEKVVA--VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSH 780
                VVA  +A     L+FV+SR+    +AR + D      +     +   ++ EI +  
Sbjct: 242  QTAAVVADTLADDGSTLVFVNSRRNAEASARRLADVTGNALSSAERERLADIAAEI-RGV 300

Query: 781  TDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHT 840
            +D   S++L D +  G A HHAG+ R  R+LVE+ F D  V+ + +T TLA GVN PA  
Sbjct: 301  SDTETSDELADAVASGAAFHHAGLAREHRELVEEAFRDRLVKAVSATPTLAAGVNTPARR 360

Query: 841  VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT-GHSELRYYLS--L 897
            V+++  Q Y+   G    L  L++ QM GRAGRP  D YGE +++   H EL       +
Sbjct: 361  VVVRDWQRYDGTAGGMQPLDVLEVHQMFGRAGRPGLDPYGEAVLLANSHDELEELFDRYV 420

Query: 898  MNQQLPIESQFVSK--LADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAP 955
                 P+ S+  ++  L   + A I  G          ++G T    +      L  +  
Sbjct: 421  YADPEPVRSKLAAEPALRTHVLAAIATGFTTTEDGLHEFLGGTLYATQTDDTGRLRSVTG 480

Query: 956  EVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTIST 1015
            +VL+                   LDRN  V+  R     + T  G++ S  Y+   + +T
Sbjct: 481  DVLR------------------YLDRNGFVE--RDGAALRATATGQLVSRLYVDPMSAAT 520

Query: 1016 YNEHLKPTMGD 1026
              + L+    D
Sbjct: 521  IIDGLRDAARD 531



 Score = 95.1 bits (235), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 152/333 (45%), Gaps = 30/333 (9%)

Query: 1337 QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE----TGVMR 1392
            +G +   P Q +          N++ + PT SGKT+ ++ A+L    +  +    +G   
Sbjct: 20   EGVEELYPPQAEAVERGVTEGANLVASVPTASGKTLIAQLAMLSAIAEGGDSPTFSGDGT 79

Query: 1393 AVYIAPLEALAKERYRDWEI--KFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWD 1450
            A+YI PL ALA E+ +++E   +FG  +G+     TG    D   L    I+++T EK D
Sbjct: 80   ALYIVPLRALAGEKAQEFEAFERFGLSVGVS----TGNYERDGARLADNDIVVATSEKVD 135

Query: 1451 ALSRRWKQRKYVQQVSLFIIDELHLI-GGQGGPVLEVIVSRMRYIASQVENKIRIVALST 1509
            +L R      ++  +S  + DE+HL+     GP LEV ++++R    QV + +++VALS 
Sbjct: 136  SLVRNGA--GWIDDLSCVVADEVHLVDDDHRGPTLEVTLAKLR---QQVAD-LQVVALSA 189

Query: 1510 SLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQA-----MTKPTF 1564
            ++ NA +L  W+ A            RP+ L   +      +++   QA         T 
Sbjct: 190  TVGNAGELAAWLDAEL-----VDSDWRPIELRTGVHYGQSLHYDDGTQAELSVGSGSQTA 244

Query: 1565 TAIVQHAKNEKPALVFVPSRKYVRLTAVDL--MTYSSMDGDQKSAFLLWPAEEVEPFIDN 1622
              +     ++   LVFV SR+    +A  L  +T +++   ++   L   A E+    D 
Sbjct: 245  AVVADTLADDGSTLVFVNSRRNAEASARRLADVTGNALSSAERE-RLADIAAEIRGVSDT 303

Query: 1623 IQEEMLKATLRHGVGYLHEGLNKTDQEVVSALF 1655
               + L   +  G  + H GL +  +E+V   F
Sbjct: 304  ETSDELADAVASGAAFHHAGLAREHRELVEEAF 336


>sp|B0R7Q2|HELS_HALS3 Putative ski2-type helicase OS=Halobacterium salinarum (strain ATCC
            29341 / DSM 671 / R1) GN=OE_4325F PE=3 SV=1
          Length = 783

 Score =  164 bits (414), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 142/551 (25%), Positives = 248/551 (45%), Gaps = 54/551 (9%)

Query: 491  KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
            +G+ +L   Q+   +  ++   N++   PT +GKT +A L +L  +A    D  +F+  +
Sbjct: 20   EGVEELYPPQAEAVERGVTEGANLVASVPTASGKTLIAQLAMLSAIA-EGGDSPTFS-GD 77

Query: 551  YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
               +Y+ P++AL  E         + + + V   +G+      ++ +  I+V T EK D 
Sbjct: 78   GTALYIVPLRALAGEKAQEFEA-FERFGLSVGVSTGNYERDGARLADNDIVVATSEKVDS 136

Query: 611  ITRKSGDRTYTQLVKLLIIDEIHLLHDN-RGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
            + R      +   +  ++ DE+HL+ D+ RGP LE  +A+  +Q+      +++V LSAT
Sbjct: 137  LVRNGA--GWIDDLSCVVADEVHLVDDDHRGPTLEVTLAKLRQQVA----DLQVVALSAT 190

Query: 670  LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQ-------RFQLMNDL 722
            + N  ++A +L   L       D+ +RP+ L     G+   + L           + +  
Sbjct: 191  VGNAGELAAWLDAEL------VDSDWRPIELR---TGVHYGQSLHYDDGTQAELSVGSGS 241

Query: 723  CYEKVVA--VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSH 780
                VVA  +A     L+FV+SR+    +AR + D      +     +   ++ EI +  
Sbjct: 242  QTAAVVADTLADDGSTLVFVNSRRNAEASARRLADVTGNALSSAERERLADIAAEI-RGV 300

Query: 781  TDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHT 840
            +D   S++L D +  G A HHAG+ R  R+LVE+ F D  V+ + +T TLA GVN PA  
Sbjct: 301  SDTETSDELADAVASGAAFHHAGLAREHRELVEEAFRDRLVKAVSATPTLAAGVNTPARR 360

Query: 841  VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT-GHSELRYYLS--L 897
            V+++  Q Y+   G    L  L++ QM GRAGRP  D YGE +++   H EL       +
Sbjct: 361  VVVRDWQRYDGTAGGMQPLDVLEVHQMFGRAGRPGLDPYGEAVLLANSHDELEELFDRYV 420

Query: 898  MNQQLPIESQFVSK--LADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAP 955
                 P+ S+  ++  L   + A I  G          ++G T    +      L  +  
Sbjct: 421  YADPEPVRSKLAAEPALRTHVLAAIATGFTTTEDGLHEFLGGTLYATQTDDTGRLRSVTG 480

Query: 956  EVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTIST 1015
            +VL+                   LDRN  V+  R     + T  G++ S  Y+   + +T
Sbjct: 481  DVLR------------------YLDRNGFVE--RDGAALRATATGQLVSRLYVDPMSAAT 520

Query: 1016 YNEHLKPTMGD 1026
              + L+    D
Sbjct: 521  IIDGLRDAARD 531



 Score = 95.1 bits (235), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 152/333 (45%), Gaps = 30/333 (9%)

Query: 1337 QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE----TGVMR 1392
            +G +   P Q +          N++ + PT SGKT+ ++ A+L    +  +    +G   
Sbjct: 20   EGVEELYPPQAEAVERGVTEGANLVASVPTASGKTLIAQLAMLSAIAEGGDSPTFSGDGT 79

Query: 1393 AVYIAPLEALAKERYRDWEI--KFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWD 1450
            A+YI PL ALA E+ +++E   +FG  +G+     TG    D   L    I+++T EK D
Sbjct: 80   ALYIVPLRALAGEKAQEFEAFERFGLSVGVS----TGNYERDGARLADNDIVVATSEKVD 135

Query: 1451 ALSRRWKQRKYVQQVSLFIIDELHLI-GGQGGPVLEVIVSRMRYIASQVENKIRIVALST 1509
            +L R      ++  +S  + DE+HL+     GP LEV ++++R    QV + +++VALS 
Sbjct: 136  SLVRNGA--GWIDDLSCVVADEVHLVDDDHRGPTLEVTLAKLR---QQVAD-LQVVALSA 189

Query: 1510 SLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQA-----MTKPTF 1564
            ++ NA +L  W+ A            RP+ L   +      +++   QA         T 
Sbjct: 190  TVGNAGELAAWLDAEL-----VDSDWRPIELRTGVHYGQSLHYDDGTQAELSVGSGSQTA 244

Query: 1565 TAIVQHAKNEKPALVFVPSRKYVRLTAVDL--MTYSSMDGDQKSAFLLWPAEEVEPFIDN 1622
              +     ++   LVFV SR+    +A  L  +T +++   ++   L   A E+    D 
Sbjct: 245  AVVADTLADDGSTLVFVNSRRNAEASARRLADVTGNALSSAERE-RLADIAAEIRGVSDT 303

Query: 1623 IQEEMLKATLRHGVGYLHEGLNKTDQEVVSALF 1655
               + L   +  G  + H GL +  +E+V   F
Sbjct: 304  ETSDELADAVASGAAFHHAGLAREHRELVEEAF 336


>sp|O59025|HELS_PYRHO Putative ski2-type helicase OS=Pyrococcus horikoshii (strain ATCC
           700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
           GN=PH1280 PE=3 SV=1
          Length = 715

 Score =  163 bits (412), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 143/490 (29%), Positives = 243/490 (49%), Gaps = 54/490 (11%)

Query: 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
           +G+++L   Q+    S +   +N L+  PT +GKT +A + I+ +L      +G      
Sbjct: 19  RGISELYPPQAEALTSGILKGENALIAIPTASGKTLIAEIAIVNRLL----KEGG----- 69

Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
            K VY+ P+KAL  E      +  ++  +KV   +GD     + +    II+ T EK+D 
Sbjct: 70  -KAVYLVPLKALAEEKFKEFKDWEEL-GLKVAMATGDYDSKDEWLGGYDIIIATAEKFDS 127

Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
           + R     ++ + VK+L++DEIHL+   +RG  LE I+ + + + +       ++GLSAT
Sbjct: 128 LLRHGS--SWIRNVKVLVVDEIHLIGSRDRGATLEFIITQMLNRAQ-------IIGLSAT 178

Query: 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLS-----QQYIGIQVKKPLQRFQLMNDLCY 724
           + N E++A +L   L K      + +RPV L      Q ++  +  K  ++F    +L Y
Sbjct: 179 IGNPEELAEWLNAKLIK------SDWRPVKLRRGVFYQGFVFWEDGKT-EKFNSWEELVY 231

Query: 725 EKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMV 784
           + +    G    L+FV+ R++  KTA  +    + N    + L+E    +E+ +S  +  
Sbjct: 232 DAIKRSKGS---LVFVNMRRKAEKTALEL-SKKIRNFLTKKELRE---LKELAESLEENP 284

Query: 785 KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIK 844
            +  L   L  G A HHAG+ R +R LVE+ F  G ++V+V+T TL+ G+N PA  VI++
Sbjct: 285 TNEKLAKALQGGVAFHHAGLGREERVLVEENFKKGLIKVVVATPTLSAGINTPAFRVIVR 344

Query: 845 GTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPI 904
            T  Y+  +     +  L+I QM+GRAGRP+YD  GE II++   E    +    +  P 
Sbjct: 345 DTWRYS--EFGMERIPILEIQQMMGRAGRPKYDEVGEAIIVSTTEEPSTVMERYIKGKP- 401

Query: 905 ESQFVSKLADQLNAEIVL-GTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDIT 963
                 KL  QL+ E +L G +       N+  +  +Y  + R    Y       K+  T
Sbjct: 402 -----EKLFSQLSNESILRGQILALIATFNFSSFREIYDFLERTFYAYQ-----GKDPYT 451

Query: 964 LGERRADLVH 973
           L +R  D+V+
Sbjct: 452 LEDRIRDIVY 461



 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 105/334 (31%), Positives = 164/334 (49%), Gaps = 35/334 (10%)

Query: 1337 QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI 1396
            +G     P Q +  T      +N L+A PT SGKT+ +E AI+    K  E G  +AVY+
Sbjct: 19   RGISELYPPQAEALTSGILKGENALIAIPTASGKTLIAEIAIVNRLLK--EGG--KAVYL 74

Query: 1397 APLEALAKER---YRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALS 1453
             PL+ALA+E+   ++DWE      LG++V   TG+     + L    III+T EK+D+L 
Sbjct: 75   VPLKALAEEKFKEFKDWE-----ELGLKVAMATGDYDSKDEWLGGYDIIIATAEKFDSLL 129

Query: 1454 RRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512
            R      +++ V + ++DE+HLIG +  G  LE I+++M        N+ +I+ LS ++ 
Sbjct: 130  RH--GSSWIRNVKVLVVDEIHLIGSRDRGATLEFIITQML-------NRAQIIGLSATIG 180

Query: 1513 NAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKP--TFTAIVQH 1570
            N ++L EW+ A            RPV L    +GV    F       T+   ++  +V  
Sbjct: 181  NPEELAEWLNAKL-----IKSDWRPVKLR---RGVFYQGFVFWEDGKTEKFNSWEELVYD 232

Query: 1571 A-KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLK 1629
            A K  K +LVFV  R+    TA++L         +K    L   E  E   +N   E L 
Sbjct: 233  AIKRSKGSLVFVNMRRKAEKTALELSKKIRNFLTKKELREL--KELAESLEENPTNEKLA 290

Query: 1630 ATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKIC 1663
              L+ GV + H GL + ++ +V   F+ G IK+ 
Sbjct: 291  KALQGGVAFHHAGLGREERVLVEENFKKGLIKVV 324


>sp|Q97AI2|HELS_THEVO Putative ski2-type helicase OS=Thermoplasma volcanium (strain ATCC
           51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
           GN=TV0828 PE=3 SV=1
          Length = 674

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 191/378 (50%), Gaps = 49/378 (12%)

Query: 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572
           NI++  PT AGKT +A   I +                 K +Y+ P+++L  E    LS 
Sbjct: 39  NIMVSVPTAAGKTLIAYSAIYETF-----------KKKLKSIYIVPLRSLAMEKYEELS- 86

Query: 573 RLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEI 632
           RL+   ++V+   G+   T   I+   +++ T EK D +     D    + V L++IDEI
Sbjct: 87  RLRELGMRVKLSIGNYDDTPDFIKRYDVVILTSEKADSLMHH--DPYMMEEVGLMVIDEI 144

Query: 633 HLLHDN-RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYF 691
           H++ D  RGP LE+++  T R +       R++ LSAT+ N  ++A +L  +L K     
Sbjct: 145 HMIGDEYRGPTLETVIT-TARYVNP---ETRIIALSATVSNASEIAEWLNASLIK----- 195

Query: 692 DNSYRPVPLSQQYIGIQVKKPL-----QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKET 746
            +S+RPVPL    +GI  +  L      R  +  +L  ++ V   G  QVLIFV SRK  
Sbjct: 196 -SSFRPVPLK---VGILYRNRLFLDGDARSDVDINLLVKETVDDGG--QVLIFVSSRKRA 249

Query: 747 AKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTR 806
              A+ +         L   + +  VS E    + D+     L ++LP+G + HHAG++ 
Sbjct: 250 EDMAKNL-------SQLFDPINDLKVSSEDANVYDDL-----LNEMLPHGVSFHHAGLSN 297

Query: 807 GDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQ 866
             R  +E  F    ++V+V+T TLA GVNLPA  VI+K    Y       T LS +++ Q
Sbjct: 298 EQRSFIEKAFRHRKLKVIVATPTLAAGVNLPARLVIVKDVTRYG--DLGITYLSNMEVKQ 355

Query: 867 MLGRAGRPQYDSYGEGII 884
           M+GRAGRP YD YG GII
Sbjct: 356 MIGRAGRPGYDQYGIGII 373



 Score =  112 bits (279), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 151/307 (49%), Gaps = 32/307 (10%)

Query: 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418
            N++V+ PT +GKT+ +  AI    +K      ++++YI PL +LA E+Y   E+   + L
Sbjct: 39   NIMVSVPTAAGKTLIAYSAIYETFKKK-----LKSIYIVPLRSLAMEKYE--ELSRLREL 91

Query: 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478
            GMRV    G        +++  ++I T EK D+L         +++V L +IDE+H+IG 
Sbjct: 92   GMRVKLSIGNYDDTPDFIKRYDVVILTSEKADSLMHH--DPYMMEEVGLMVIDEIHMIGD 149

Query: 1479 Q-GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRP 1537
            +  GP LE +++  RY+  +     RI+ALS +++NA ++ EW+ A+           RP
Sbjct: 150  EYRGPTLETVITTARYVNPET----RIIALSATVSNASEIAEWLNASL-----IKSSFRP 200

Query: 1538 VPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEK-PALVFVPSRKYVRLTAVDLMT 1596
            VPL++ I   +    +    A +      +V+   ++    L+FV SRK     A +L  
Sbjct: 201  VPLKVGILYRNRLFLDG--DARSDVDINLLVKETVDDGGQVLIFVSSRKRAEDMAKNLSQ 258

Query: 1597 YSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFE 1656
                  D K +     +E+      N+ +++L   L HGV + H GL+   +  +   F 
Sbjct: 259  LFDPINDLKVS-----SEDA-----NVYDDLLNEMLPHGVSFHHAGLSNEQRSFIEKAFR 308

Query: 1657 AGKIKIC 1663
              K+K+ 
Sbjct: 309  HRKLKVI 315


>sp|Q9YFQ8|HELS_AERPE Putative ski2-type helicase OS=Aeropyrum pernix (strain ATCC 700893
           / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=APE_0191.1
           PE=3 SV=2
          Length = 735

 Score =  161 bits (407), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 133/429 (31%), Positives = 211/429 (49%), Gaps = 63/429 (14%)

Query: 481 EMPEWAQPAFKGMTQLNRV------QSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQ 534
           ++P WA    + + +L  V      Q    ++ +   +N+++ APTG+GKT +A++ I+ 
Sbjct: 7   DIPSWATTETRTLAKLAGVERLFEPQYMALQAGVEKGENLVVAAPTGSGKTFIALVAIVN 66

Query: 535 QLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ 594
            LA           +  +  Y+ P+K++  E   + S  L    +K++   GD    R+ 
Sbjct: 67  SLA----------RAGGRAFYLVPLKSVAYEKYTSFSI-LSRMGLKLKISVGD---FREG 112

Query: 595 IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQ 653
             E  +++ T EK+D + R S   +  + V +LI+DEIH + D  RGP+LESIV+R +  
Sbjct: 113 PPEAPVVIATYEKFDSLLRVSP--SLARNVSVLIVDEIHSVSDPKRGPILESIVSRML-- 168

Query: 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVK--- 710
              +    +LVGLSAT+PN  ++A ++      G    ++S+RPVPL ++Y+  + K   
Sbjct: 169 --ASAGEAQLVGLSATVPNAGEIAEWI------GGKIVESSWRPVPL-REYVFKEYKLYS 219

Query: 711 -----KPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGR 765
                + + R   + DL      A+    Q L+F +SR+      RA+         LGR
Sbjct: 220 PTGGLREVPRVYGLYDLDL-AAEAIEDGGQALVFTYSRR------RAVTLAKRAAKRLGR 272

Query: 766 FLKEDSVSREILQSHTDMVKSN--------DLKDLLPYGFAIHHAGMTRGDRQLVEDLFG 817
            L     SRE      +  ++         +L  L+  G A HHAG+    R+ VE+ F 
Sbjct: 273 RLS----SREARVYSAEASRAEGAPRSVAEELASLIAAGIAYHHAGLPPSLRKTVEEAFR 328

Query: 818 DGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD 877
            G V+V+ ST TLA GVNLPA  V+I     Y  E G    +   +  QM GRAGRP  D
Sbjct: 329 AGAVKVVYSTPTLAAGVNLPARRVVID--SYYRYEAGFREPIRVAEYKQMAGRAGRPGLD 386

Query: 878 SYGEGIIIT 886
            +GE II+ 
Sbjct: 387 EFGEAIIVA 395



 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 95/357 (26%), Positives = 159/357 (44%), Gaps = 79/357 (22%)

Query: 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPL 1399
            + F P Q           +N++VAAPTGSGKT  +  AI+ +  +A      RA Y+ PL
Sbjct: 27   RLFEP-QYMALQAGVEKGENLVVAAPTGSGKTFIALVAIVNSLARAGG----RAFYLVPL 81

Query: 1400 EALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK-LLEKGQIIISTPEKWDALSRRWKQ 1458
            +++A E+Y  + I    GL +++      +  D +    +  ++I+T EK+D+L R    
Sbjct: 82   KSVAYEKYTSFSILSRMGLKLKI------SVGDFREGPPEAPVVIATYEKFDSLLR--VS 133

Query: 1459 RKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDL 1517
                + VS+ I+DE+H +   + GP+LE IVSRM  +AS  E +  +V LS ++ NA ++
Sbjct: 134  PSLARNVSVLIVDEIHSVSDPKRGPILESIVSRM--LASAGEAQ--LVGLSATVPNAGEI 189

Query: 1518 GEWIGA-----------------TSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT 1560
             EWIG                    + L++   G+R VP    +  +D+           
Sbjct: 190  AEWIGGKIVESSWRPVPLREYVFKEYKLYSPTGGLREVPRVYGLYDLDLA---------- 239

Query: 1561 KPTFTAIVQHAKNEKPALVFVPSRKYV-------------RLTAVDLMTYSSMDGDQKSA 1607
                    +  ++   ALVF  SR+               RL++ +   YS+        
Sbjct: 240  -------AEAIEDGGQALVFTYSRRRAVTLAKRAAKRLGRRLSSREARVYSA-------- 284

Query: 1608 FLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICY 1664
                 A   E    ++ EE L + +  G+ Y H GL  + ++ V   F AG +K+ Y
Sbjct: 285  ----EASRAEGAPRSVAEE-LASLIAAGIAYHHAGLPPSLRKTVEEAFRAGAVKVVY 336


>sp|Q4JC00|HELS_SULAC Putative ski2-type helicase OS=Sulfolobus acidocaldarius (strain
           ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
           11770) GN=Saci_0263 PE=3 SV=1
          Length = 705

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 128/417 (30%), Positives = 207/417 (49%), Gaps = 58/417 (13%)

Query: 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
           +G+ +LN  Q+   K  L     +L+  PT +GKT +A L ++  L LN+          
Sbjct: 22  RGIKKLNPPQTEAVKKGLIEDKRLLITTPTASGKTLMAELGMISHL-LNKGG-------- 72

Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
            K +YV P++AL +E      +  +    KV   SGD       +    IIVTT EK D 
Sbjct: 73  -KAIYVTPLRALTSEKYSTFKD-WEKLGFKVGVTSGDYDTDDPWLRNFDIIVTTYEKLDS 130

Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
           + R S +  + + +   ++DE H ++D +RGPV+E +  R  RQ         ++ LSAT
Sbjct: 131 LWRHSAE--WLKDIDYFVLDEFHYMNDGDRGPVVEGVAVRAKRQGT-------ILALSAT 181

Query: 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEK--- 726
           + N +DVA +L  ++         ++RPVPL +  +  + KK      L +D    K   
Sbjct: 182 IGNAKDVAKWLNADI------VATNWRPVPLKEGVMYSEGKK--GHIILYSDGTTNKLKG 233

Query: 727 ---VVA-----VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQ 778
              ++A     ++   QV++F  SRK    TA  I            F+K D   +++L+
Sbjct: 234 DDPIIAYTLDILSKGGQVIVFRSSRKYAETTAMKISQYM-------NFVKLDD--KKLLE 284

Query: 779 SHTDMVKSND--------LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATL 830
           +   + +  D        L +L+  G A HHAG+++G R ++E  F +  ++V+ +T TL
Sbjct: 285 TAERIKEVEDAGSNEKEVLYNLIVRGVAFHHAGLSKGLRDIIEASFRERIIKVITATPTL 344

Query: 831 AWGVNLPAHTVIIKGTQIYNPEKGAWTEL-SPLDIMQMLGRAGRPQYDSYGEGIIIT 886
           A GVNLPA  V+I     +N +   +TE+ S ++  QM GRAGRP YD++GE II+ 
Sbjct: 345 AAGVNLPARAVVIGDIYRFNRKIVGFTEMISTMEYRQMSGRAGRPGYDNHGEAIILV 401



 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 172/366 (46%), Gaps = 46/366 (12%)

Query: 1315 ELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICS 1374
            E + ++ LPV +    + ++  +G K  NP QT+        D  +L+  PT SGKT+ +
Sbjct: 2    EEITVEDLPVDSKVKDIIKS--RGIKKLNPPQTEAVKKGLIEDKRLLITTPTASGKTLMA 59

Query: 1375 EFAILRNHQKASETGVMRAVYIAPLEALAKERY---RDWEIKFGQGLGMRVVELTGETAM 1431
            E  ++ +          +A+Y+ PL AL  E+Y   +DWE      LG +V   +G+   
Sbjct: 60   ELGMISHLLNKGG----KAIYVTPLRALTSEKYSTFKDWE-----KLGFKVGVTSGDYDT 110

Query: 1432 DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG-GQGGPVLEVIVSR 1490
            D   L    II++T EK D+L R     ++++ +  F++DE H +  G  GPV+E +  R
Sbjct: 111  DDPWLRNFDIIVTTYEKLDSLWRH--SAEWLKDIDYFVLDEFHYMNDGDRGPVVEGVAVR 168

Query: 1491 MRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHI------ 1544
             +   +       I+ALS ++ NAKD+ +W+ A            RPVPL+  +      
Sbjct: 169  AKRQGT-------ILALSATIGNAKDVAKWLNADI-----VATNWRPVPLKEGVMYSEGK 216

Query: 1545 QGVDITNFEARMQAMT--KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDL---MTYSS 1599
            +G  I   +     +    P     +         +VF  SRKY   TA+ +   M +  
Sbjct: 217  KGHIILYSDGTTNKLKGDDPIIAYTLDILSKGGQVIVFRSSRKYAETTAMKISQYMNFVK 276

Query: 1600 MDGDQKSAFLLWPAEEVEPFID--NIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA 1657
            +D D+K   LL  AE ++   D  + ++E+L   +  GV + H GL+K  ++++ A F  
Sbjct: 277  LD-DKK---LLETAERIKEVEDAGSNEKEVLYNLIVRGVAFHHAGLSKGLRDIIEASFRE 332

Query: 1658 GKIKIC 1663
              IK+ 
Sbjct: 333  RIIKVI 338


>sp|A8MB76|HELS_CALMQ Putative ski2-type helicase OS=Caldivirga maquilingensis (strain
           ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)
           GN=Cmaq_0318 PE=3 SV=1
          Length = 756

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 123/409 (30%), Positives = 207/409 (50%), Gaps = 35/409 (8%)

Query: 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
           +G+  L   Q    ++ L + +NIL+ + T +GKT +A +  +  + +N          +
Sbjct: 20  RGIRTLYPPQEEAIRAGLLNGENILMVSATASGKTLLAEVAAVNNVLVN----------D 69

Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
            K +   P+KAL  E + +  N      ++V   +GD     + +    +I+TT EK D 
Sbjct: 70  KKSLVAVPLKALAFEKLNDF-NTYSELGIRVAASTGDYNSEDKWLGSYDVIITTYEKLDS 128

Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHDN-RGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
           + R      +   V  LIIDEIH ++D+ RGP++ESIVA+ +R +    +   ++GLSAT
Sbjct: 129 LLRLKPSWIWN--VGQLIIDEIHFINDDERGPIIESIVAK-LRMLNLNPQ---IIGLSAT 182

Query: 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQ----QYIGIQVKKPLQRFQLMND-LCY 724
           + N E++A +L   L K      + +RPV L +    + +   V    +R     D L  
Sbjct: 183 IGNPEELANWLNAKLVK------SDWRPVSLREGVYHKGVVTYVNDGEKRISGQGDSLIN 236

Query: 725 EKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFL---KEDSVSREILQSHT 781
             V  +    QVL+F  SR+   + AR + +    +    R++   +   ++ E+ ++ +
Sbjct: 237 LTVDTLNDGGQVLVFSSSRQGAVRIARKLAEYICSSPV--RYIDPGEAGKLAEEVRETSS 294

Query: 782 DMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTV 841
             + + +L  L+  G + HHAG+    R+++E+ F  G ++VL ST TLA GVNLPA  V
Sbjct: 295 SRILAEELTGLIKCGVSFHHAGLELEVRRVIEEGFRRGVLRVLASTTTLAAGVNLPARRV 354

Query: 842 IIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890
           I+   + Y P  G + E+  ++  QM GRAGRP  D YGE III    +
Sbjct: 355 IVNEYRRYEPGYG-FIEIPVMEYKQMAGRAGRPGLDPYGEAIIIVSSKD 402



 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 101/356 (28%), Positives = 157/356 (44%), Gaps = 38/356 (10%)

Query: 1321 PLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILR 1380
            PLP + LR+ L     +G +   P Q +         +N+L+ + T SGKT+ +E A + 
Sbjct: 7    PLP-SLLRDFLISK--RGIRTLYPPQEEAIRAGLLNGENILMVSATASGKTLLAEVAAVN 63

Query: 1381 N---HQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLE 1437
            N   + K S   V       PL+ALA E+  D+       LG+RV   TG+   + K L 
Sbjct: 64   NVLVNDKKSLVAV-------PLKALAFEKLNDFNTY--SELGIRVAASTGDYNSEDKWLG 114

Query: 1438 KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG-GQGGPVLEVIVSRMRYIAS 1496
               +II+T EK D+L R   +  ++  V   IIDE+H I   + GP++E IV+++R +  
Sbjct: 115  SYDVIITTYEKLDSLLRL--KPSWIWNVGQLIIDEIHFINDDERGPIIESIVAKLRMLNL 172

Query: 1497 QVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLE--IHIQGVD--ITNF 1552
              +    I+ LS ++ N ++L  W+ A            RPV L   ++ +GV   + + 
Sbjct: 173  NPQ----IIGLSATIGNPEELANWLNAKL-----VKSDWRPVSLREGVYHKGVVTYVNDG 223

Query: 1553 EARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDG----DQKSAF 1608
            E R+           V    +    LVF  SR+     A  L  Y         D   A 
Sbjct: 224  EKRISGQGDSLINLTVDTLNDGGQVLVFSSSRQGAVRIARKLAEYICSSPVRYIDPGEAG 283

Query: 1609 LLWPAEEV-EPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKIC 1663
             L  AEEV E     I  E L   ++ GV + H GL    + V+   F  G +++ 
Sbjct: 284  KL--AEEVRETSSSRILAEELTGLIKCGVSFHHAGLELEVRRVIEEGFRRGVLRVL 337


>sp|Q9HJX7|HELS_THEAC Putative ski2-type helicase OS=Thermoplasma acidophilum (strain
           ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
           AMRC-C165) GN=Ta0835 PE=3 SV=1
          Length = 674

 Score =  154 bits (389), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 122/385 (31%), Positives = 191/385 (49%), Gaps = 63/385 (16%)

Query: 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572
           N+++  PT AGKT +A   I +               N K +Y+ P+++L  E    LS 
Sbjct: 39  NVVVSVPTAAGKTLIAYSAIYETF-----------QRNLKSIYIVPLRSLAMEKFSELS- 86

Query: 573 RLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEI 632
           RL+   +KV+   GD   +   I+    ++ T EK D +     D      V LL++DEI
Sbjct: 87  RLRDLGLKVKMSIGDYDDSPDFIKRYDAVILTSEKADSLLHH--DPYILNDVGLLVLDEI 144

Query: 633 HLLHD-NRGPVLESI--VARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLF 689
           H + D +RGP LE++  +AR V         +R++ LSAT+ N  ++A +L  +L K   
Sbjct: 145 HTIGDESRGPTLETVASIARYV------NPDVRILALSATVSNAMELASWLDASLIK--- 195

Query: 690 YFDNSYRPVPL-------SQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHS 742
              + +RPVPL        Q Y+  + +  +   Q++ +        V    QVL+FV S
Sbjct: 196 ---SDFRPVPLKTGILYRDQLYLDGKRRSGVSINQIIRE-------TVEDNGQVLMFVSS 245

Query: 743 RKETAKTARAIRDTALENDTLGRFLKEDS---VSREILQSHTDMVKSNDLKDLLPYGFAI 799
           RK+   TAR           L +    D+   +S +    + DM     L ++LP G A 
Sbjct: 246 RKKAEDTAR----------DLAQIFGSDANIKISSDETNVYDDM-----LNEILPRGVAF 290

Query: 800 HHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTEL 859
           HHAG++   R  +E  F    ++V+V+T TLA GVNLPA  VI++    +  +  ++  L
Sbjct: 291 HHAGLSNDQRAFIEREFRARRIKVIVATPTLAAGVNLPARLVIVRDITRWGSDGISY--L 348

Query: 860 SPLDIMQMLGRAGRPQYDSYGEGII 884
           + ++I QM+GRAGRP YD YG G+I
Sbjct: 349 TNMEIKQMIGRAGRPGYDQYGIGLI 373



 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 148/307 (48%), Gaps = 32/307 (10%)

Query: 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418
            NV+V+ PT +GKT+ +  AI    Q+      ++++YI PL +LA E++   E+   + L
Sbjct: 39   NVVVSVPTAAGKTLIAYSAIYETFQRN-----LKSIYIVPLRSLAMEKFS--ELSRLRDL 91

Query: 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYV-QQVSLFIIDELHLIG 1477
            G++V    G+       +++   +I T EK D+L        Y+   V L ++DE+H IG
Sbjct: 92   GLKVKMSIGDYDDSPDFIKRYDAVILTSEKADSL---LHHDPYILNDVGLLVLDEIHTIG 148

Query: 1478 GQG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVR 1536
             +  GP LE + S  RY    V   +RI+ALS +++NA +L  W+ A+           R
Sbjct: 149  DESRGPTLETVASIARY----VNPDVRILALSATVSNAMELASWLDASL-----IKSDFR 199

Query: 1537 PVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMT 1596
            PVPL+  I   D    + + ++        I +  ++    L+FV SRK    TA DL  
Sbjct: 200  PVPLKTGILYRDQLYLDGKRRSGVSIN-QIIRETVEDNGQVLMFVSSRKKAEDTARDLAQ 258

Query: 1597 YSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFE 1656
                D + K +     ++E      N+ ++ML   L  GV + H GL+   +  +   F 
Sbjct: 259  IFGSDANIKIS-----SDET-----NVYDDMLNEILPRGVAFHHAGLSNDQRAFIEREFR 308

Query: 1657 AGKIKIC 1663
            A +IK+ 
Sbjct: 309  ARRIKVI 315


>sp|A7IB61|HELS_METB6 Putative ski2-type helicase OS=Methanoregula boonei (strain 6A8)
           GN=Mboo_2458 PE=3 SV=1
          Length = 723

 Score =  152 bits (383), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 130/419 (31%), Positives = 203/419 (48%), Gaps = 67/419 (15%)

Query: 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNY 551
           G+ +L   Q+   +  L    N+L+  PT +GKT +A + + + +A           +  
Sbjct: 20  GIRELYPPQAACVERGLLDGKNLLVAIPTASGKTLIAEMAMHRHIA-----------NGG 68

Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
           K +Y+ P+KAL +E      N+     VKV   +GD       + +  IIV T EK D +
Sbjct: 69  KCLYIVPLKALASEKYEEFGNK----GVKVGLSTGDLDRRDDALGKNDIIVATSEKVDSL 124

Query: 612 TRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670
            R +G R +   + L++IDEIHL+   +RGP LE ++A+    + +    ++L+GLSAT+
Sbjct: 125 LR-NGAR-WIPDITLVVIDEIHLIDSPDRGPTLEMVIAK----MRSKNPGMQLIGLSATI 178

Query: 671 PNYEDVALFLR----------VNLEKGLFY-----FDNSYRPVPLSQQYIGIQVKKPLQR 715
            N + +A +L           V+L +G+FY     F    RPV         QV K    
Sbjct: 179 GNPKVLAGWLDAELVTSSWRPVDLRQGVFYDNRIQFAERMRPVK--------QVSKNYDD 230

Query: 716 FQLMNDLCYEKVVAVAGKHQVLIFVHSRKET-AKTARAIRDTALENDTLGRFLKEDSVSR 774
             L  D        +A   Q L+FV SR+   A   RA      E+  L          R
Sbjct: 231 LNLCLD-------TIAEGGQCLVFVSSRRNAEAFAKRAAGAIKSEDAALAA-----CAER 278

Query: 775 EILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGV 834
            +  + T+MVK+  L   +  G A HHAG++R +R +VE+ F    ++ + ST TLA G+
Sbjct: 279 LLEGTPTEMVKT--LAACVAKGAAFHHAGLSRKERSIVEEAFRKNLLKCISSTPTLAAGL 336

Query: 835 NLPAHTVIIKGTQIYNPEKGAWTELSPLDIM---QMLGRAGRPQYDSYGEGIIITGHSE 890
           NLPA  VII+    ++  +G    + P+ +    QM GRAGRP+ D YGE ++I   +E
Sbjct: 337 NLPARRVIIRDYLRFSAGEG----MQPIPVSEYRQMAGRAGRPRLDPYGEAVLIAKEAE 391



 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 98/350 (28%), Positives = 158/350 (45%), Gaps = 44/350 (12%)

Query: 1326 ALRNPLYEA-LYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQK 1384
            A+  PL +  L  G +   P Q            N+LVA PT SGKT+ +E A+   H+ 
Sbjct: 7    AIPEPLRQQYLGLGIRELYPPQAACVERGLLDGKNLLVAIPTASGKTLIAEMAM---HRH 63

Query: 1385 ASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIIS 1444
             +  G  + +YI PL+ALA E+Y ++  K     G++V   TG+       L K  II++
Sbjct: 64   IANGG--KCLYIVPLKALASEKYEEFGNK-----GVKVGLSTGDLDRRDDALGKNDIIVA 116

Query: 1445 TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVENKIR 1503
            T EK D+L R     +++  ++L +IDE+HLI     GP LE+++++MR         ++
Sbjct: 117  TSEKVDSLLRNGA--RWIPDITLVVIDEIHLIDSPDRGPTLEMVIAKMR----SKNPGMQ 170

Query: 1504 IVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITN---FEARMQAMT 1560
            ++ LS ++ N K L  W+ A            RPV L    QGV   N   F  RM+ + 
Sbjct: 171  LIGLSATIGNPKVLAGWLDAEL-----VTSSWRPVDLR---QGVFYDNRIQFAERMRPVK 222

Query: 1561 KPT-----FTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEE 1615
            + +         +         LVFV SR+     A      ++     + A L   AE 
Sbjct: 223  QVSKNYDDLNLCLDTIAEGGQCLVFVSSRR----NAEAFAKRAAGAIKSEDAALAACAER 278

Query: 1616 VEPFIDNIQEEMLK---ATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKI 1662
                ++    EM+K   A +  G  + H GL++ ++ +V   F    +K 
Sbjct: 279  ---LLEGTPTEMVKTLAACVAKGAAFHHAGLSRKERSIVEEAFRKNLLKC 325


>sp|O73946|HELS_PYRFU Putative ski2-type helicase OS=Pyrococcus furiosus (strain ATCC
           43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF0677 PE=1 SV=1
          Length = 720

 Score =  150 bits (380), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 153/540 (28%), Positives = 253/540 (46%), Gaps = 68/540 (12%)

Query: 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
           +G+      Q+   KS +    N L+  PT +GKT +A + ++ ++              
Sbjct: 19  RGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGG--------- 69

Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
            K VY+ P+KAL  E      +  +   ++V   +GD     + + +  II+ T EK+D 
Sbjct: 70  -KAVYIVPLKALAEEKFQEFQD-WEKIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDS 127

Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
           + R     ++ + VK+L+ DEIHL+   +RG  LE I+A  + + +       ++GLSAT
Sbjct: 128 LLRHGS--SWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQ-------IIGLSAT 178

Query: 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ--YIGIQVKK--PLQRFQLMNDLCYE 725
           + N E++A +L   L        + +RPV L +   Y G    +   + RF    +L Y+
Sbjct: 179 IGNPEELAEWLNAEL------IVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYD 232

Query: 726 KVVAVAGKHQVLIFVHSRKETAKTARAI--RDTALENDTLGRFLKEDSVSREILQSHTDM 783
              A+  K   LIFV+ R++  + A  +  +  +L      R L E + S E   ++  +
Sbjct: 233 ---AIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKL 289

Query: 784 VKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVII 843
            K+      +  G A HHAG+ R +R LVE+ F  G ++ +V+T TL+ G+N PA  VII
Sbjct: 290 AKA------IRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVII 343

Query: 844 KGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR----YYLSLMN 899
           +   I+         +  +++ QMLGRAGRP+YD  GEGII++   + R    +Y+    
Sbjct: 344 R--DIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKP 401

Query: 900 QQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYT-YLYIR--------MLRNPAL 950
           ++L  +    S L  Q+ A I        +E   +I  T Y Y R         +RN   
Sbjct: 402 EKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRNILY 461

Query: 951 YGLAPEVLK---ED----ITLGERRADLV---HTAATILDR-NNLVKYDRKSGYFQVTDL 999
           + L  E ++   ED    ++LG R A L    +TA    D+   +VK     G F +  L
Sbjct: 462 FLLENEFIEISLEDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISL 521



 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 104/342 (30%), Positives = 166/342 (48%), Gaps = 55/342 (16%)

Query: 1337 QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI 1396
            +G + F P Q +          N L++ PT SGKT+ +E A++  H+  ++ G  +AVYI
Sbjct: 19   RGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMV--HRILTQGG--KAVYI 74

Query: 1397 APLEALAKER---YRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALS 1453
             PL+ALA+E+   ++DWE      +G+RV   TG+     + L K  III+T EK+D+L 
Sbjct: 75   VPLKALAEEKFQEFQDWE-----KIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLL 129

Query: 1454 RRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512
            R      +++ V + + DE+HLIG +  G  LEVI++ M         K +I+ LS ++ 
Sbjct: 130  RH--GSSWIKDVKILVADEIHLIGSRDRGATLEVILAHML-------GKAQIIGLSATIG 180

Query: 1513 NAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEA-------RMQAMTKPTFT 1565
            N ++L EW+ A            RPV L    +GV    F         R  +  +  + 
Sbjct: 181  NPEELAEWLNAEL-----IVSDWRPVKLR---RGVFYQGFVTWEDGSIDRFSSWEELVYD 232

Query: 1566 AIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAE--EVEPFIDNI 1623
            AI    + +K AL+FV  R+     A++L         +K   LL   E   +    D++
Sbjct: 233  AI----RKKKGALIFVNMRRKAERVALEL--------SKKVKSLLTKPEIRALNELADSL 280

Query: 1624 QE----EMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIK 1661
            +E    E L   +R GV + H GL + ++ +V   F  G IK
Sbjct: 281  EENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIK 322


>sp|O75417|DPOLQ_HUMAN DNA polymerase theta OS=Homo sapiens GN=POLQ PE=1 SV=2
          Length = 2590

 Score =  144 bits (363), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 134/483 (27%), Positives = 225/483 (46%), Gaps = 80/483 (16%)

Query: 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572
           N++  APT AGKT VA L IL+++   R           K +++ P  ++  E    L +
Sbjct: 110 NLVYSAPTSAGKTLVAELLILKRVLEMRK----------KALFILPFVSVAKEKKYYLQS 159

Query: 573 RLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEI 632
             Q   +KV    G  + +R       I V T E+ + +  +  +     L+ ++++DE+
Sbjct: 160 LFQEVGIKVDGYMGSTSPSRH-FSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDEL 218

Query: 633 HLLHDN-RGPVLESIVARTV---RQIETTK--------EHIRLVGLSATLPNYEDVALFL 680
           H+L D+ RG +LE ++ +     R+  + +          +++VG+SATLPN E VA +L
Sbjct: 219 HMLGDSHRGYLLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSATLPNLELVASWL 278

Query: 681 RVNLEKGLFYFDNSYRPVPLSQQY-IGIQV----KKPLQRFQLM----------NDLCYE 725
              L      +   +RPVPL +   +G  +     K ++ F+ M            LCYE
Sbjct: 279 NAEL------YHTDFRPVPLLESVKVGNSIYDSSMKLVREFEPMLQVKGDEDHVVSLCYE 332

Query: 726 KVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVK 785
               +   H VL+F  S+K   K A  I             L + S    ++    ++++
Sbjct: 333 ---TICDNHSVLLFCPSKKWCEKLADIIAREFYNLHHQAEGLVKPSECPPVILEQKELLE 389

Query: 786 SND------------LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWG 833
             D            L+  +P+G A HHAG+T  +R ++E  F  G ++VL +T+TL+ G
Sbjct: 390 VMDQLRRLPSGLDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSG 449

Query: 834 VNLPAHTVIIKGTQIYNPEKGAWTELSPLDIM---QMLGRAGRPQYDSYGEGIIITGHSE 890
           VNLPA  VII+ T I+           PLDI+   QM+GRAGR   D+ GE I+I  +SE
Sbjct: 450 VNLPARRVIIR-TPIFGGR--------PLDILTYKQMVGRAGRKGVDTVGESILICKNSE 500

Query: 891 LRYYLSLMNQQL-PIESQFVSKLADQLNA-------EIVLGTV-QNAKEACNWIGYTYLY 941
               ++L+   L P+ S    +  +++         EI++G V   +++   +   T+L 
Sbjct: 501 KSKGIALLQGSLKPVRSCLQRREGEEVTGSMIRAILEIIVGGVASTSQDMHTYAACTFLA 560

Query: 942 IRM 944
             M
Sbjct: 561 ASM 563



 Score = 84.7 bits (208), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 166/347 (47%), Gaps = 60/347 (17%)

Query: 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418
            N++ +APT +GKT+ +E  IL+   +  +    +A++I P  ++AKE+    +  F Q +
Sbjct: 110  NLVYSAPTSAGKTLVAELLILKRVLEMRK----KALFILPFVSVAKEKKYYLQSLF-QEV 164

Query: 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG- 1477
            G++V    G T+   +      I + T E+ + L  R  +   +  + + ++DELH++G 
Sbjct: 165  GIKVDGYMGSTSPS-RHFSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDELHMLGD 223

Query: 1478 GQGGPVLEVIVSRMRYI-----------ASQVENKIRIVALSTSLANAKDLGEWIGATSH 1526
               G +LE++++++ YI           AS + N ++IV +S +L N + +  W+ A   
Sbjct: 224  SHRGYLLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSATLPNLELVASWLNAEL- 282

Query: 1527 GLFNFPPGVRPVPLEIHIQGVDITN--FEARMQAMTKPTFTAIVQHAKNE---------- 1574
                +    RPVPL   ++ V + N  +++ M+ + +  F  ++Q   +E          
Sbjct: 283  ----YHTDFRPVPL---LESVKVGNSIYDSSMKLVRE--FEPMLQVKGDEDHVVSLCYET 333

Query: 1575 ----KPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAE---------EVEPFID 1621
                   L+F PS+K+    A D++     +   ++  L+ P+E         E+   +D
Sbjct: 334  ICDNHSVLLFCPSKKWCEKLA-DIIAREFYNLHHQAEGLVKPSECPPVILEQKELLEVMD 392

Query: 1622 NIQ------EEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKI 1662
             ++      + +L+ T+  GV + H GL   +++++   F  G I++
Sbjct: 393  QLRRLPSGLDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRV 439


>sp|O26901|HELS_METTH Putative ski2-type helicase OS=Methanothermobacter
           thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
           10044 / NBRC 100330 / Delta H) GN=MTH_810 PE=3 SV=1
          Length = 690

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 135/490 (27%), Positives = 232/490 (47%), Gaps = 70/490 (14%)

Query: 481 EMPEWAQPAFKGMTQLNRVQ-SRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALN 539
           EM +     +  + +LN  Q S +    L S DN ++  PT +GKT + ++  L+ +   
Sbjct: 7   EMRQILGDCYPHIRELNPAQRSAIEAGYLESEDNYIIAIPTASGKTLLGIIAALKTVM-- 64

Query: 540 RNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQ 599
              +G       +++Y  P+ ++  E +     +L+ + ++V    G    T      + 
Sbjct: 65  ---EGG------RVIYTVPLLSIQNEKIKEF-RKLEEHGIRV----GKDPRT------SD 104

Query: 600 IIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTK 658
           I V   E +D +TR S +    + V LLI+DE H++ +  RGPV+ES + R      T  
Sbjct: 105 IAVMVFESFDSLTRFSWN--ILREVDLLIVDEFHMIGEYTRGPVIESAITRA----RTLN 158

Query: 659 EHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQL 718
             +R+V LSATL N +++A +L   +       ++ YRPVPL ++ +  ++    ++   
Sbjct: 159 PSVRIVALSATLSNMDEIAGWLDARV------VEHDYRPVPLHREVLDTEMFGVREK--- 209

Query: 719 MNDLCYEKVV--AVAGKHQVLIFVHSRKETAKTARAIRDT---ALENDTLGRFLKEDSVS 773
            ND+   KV+  ++    Q L FV +R+ T   A  + D     + +D +  F +     
Sbjct: 210 -NDVVL-KVLERSLEDGSQTLAFVSTRRFTESLASHLADKISGKIPDDMVESFREVAGKV 267

Query: 774 REILQSHTDMVKSNDLK--DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLA 831
            E+ +S      S  LK  + L  G A HHAG+    R+++ED F DG++ ++ +T +L 
Sbjct: 268 LEVPKSRGSPPTSTCLKLAECLEAGIAFHHAGLFNRQREIIEDEFRDGNILMITATPSLM 327

Query: 832 WGVNLPAHTVIIKGTQIYNPEKGAWTELSP-----LDIMQMLGRAGRPQYDSYGEGIIIT 886
           +GVNLP+ TV+I+       +   WT   P      D  QM GRAGRPQYD  G   +I 
Sbjct: 328 YGVNLPSRTVVIR-------DYTRWTSQGPRRIPVFDYEQMSGRAGRPQYDDAGYSYLIA 380

Query: 887 -GHSEL----RYYLSLMNQQLP---IESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYT 938
             H E      YY+    ++     IE++    L  Q+ A++  G     +E  ++   T
Sbjct: 381 RSHDEAMDLEEYYIRGEVERTTSRIIENR--DALYRQIIAQVASGLSGTTEELADFFRNT 438

Query: 939 YLYIRMLRNP 948
           +   +M+  P
Sbjct: 439 FYGYQMVEGP 448



 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 141/340 (41%), Gaps = 51/340 (15%)

Query: 1335 LYQGFKHFNPIQTQVFTVLY-NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRA 1393
             Y   +  NP Q       Y  ++DN ++A PT SGKT+    A L+   +       R 
Sbjct: 15   CYPHIRELNPAQRSAIEAGYLESEDNYIIAIPTASGKTLLGIIAALKTVMEGG-----RV 69

Query: 1394 VYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALS 1453
            +Y  PL ++  E+ +  E +  +  G+RV           K      I +   E +D+L+
Sbjct: 70   IYTVPLLSIQNEKIK--EFRKLEEHGIRVG----------KDPRTSDIAVMVFESFDSLT 117

Query: 1454 R-RWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVENKIRIVALSTSL 1511
            R  W     +++V L I+DE H+IG    GPV+E  ++R R +   V    RIVALS +L
Sbjct: 118  RFSW---NILREVDLLIVDEFHMIGEYTRGPVIESAITRARTLNPSV----RIVALSATL 170

Query: 1512 ANAKDLGEWIGA--TSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQ 1569
            +N  ++  W+ A    H         RPVPL  H + +D   F  R +         + +
Sbjct: 171  SNMDEIAGWLDARVVEHDY-------RPVPL--HREVLDTEMFGVREK--NDVVLKVLER 219

Query: 1570 HAKNEKPALVFVPSRKYVRLTAVDLMTYSS--MDGDQKSAF-------LLWPAEEVEPFI 1620
              ++    L FV +R++    A  L    S  +  D   +F       L  P     P  
Sbjct: 220  SLEDGSQTLAFVSTRRFTESLASHLADKISGKIPDDMVESFREVAGKVLEVPKSRGSPPT 279

Query: 1621 DNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKI 1660
                +  L   L  G+ + H GL    +E++   F  G I
Sbjct: 280  STCLK--LAECLEAGIAFHHAGLFNRQREIIEDEFRDGNI 317


>sp|Q465R3|HELS_METBF Putative ski2-type helicase OS=Methanosarcina barkeri (strain
           Fusaro / DSM 804) GN=Mbar_A3508 PE=3 SV=1
          Length = 729

 Score =  142 bits (357), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 117/404 (28%), Positives = 200/404 (49%), Gaps = 40/404 (9%)

Query: 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNY 551
           G+ +L   Q+   +  L    N+L   PT +GKT +A L +L+ +            +  
Sbjct: 20  GIMELYPPQAEAVEKGLLEGRNLLAAIPTASGKTLLAELAMLKSIL-----------AGG 68

Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
           K +Y+ P++AL +E         ++  ++V   +GD  L  + +    IIV T EK D +
Sbjct: 69  KALYIVPLRALASEKFRRFREFSEL-GIRVGISTGDYDLRDEGLGVNDIIVATSEKTDSL 127

Query: 612 TRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670
            R   +  + Q + +++ DE+HL+   +RGP LE  +A+ +R++  +    +++ LSAT+
Sbjct: 128 LRN--ETVWMQEISVVVADEVHLIDSPDRGPTLEVTLAK-LRKMNPS---CQILALSATV 181

Query: 671 PNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAV 730
            N +++A++L   L        + +RP  L +            R + +     ++ V +
Sbjct: 182 GNADELAVWLEAEL------VVSEWRPTELLEGVFFNGTFYCKDREKTVEQSTKDEAVNL 235

Query: 731 A-----GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQ-SHTDMV 784
           A        Q L+F  SRK     A+    T  +  +         ++ EIL+ S TD  
Sbjct: 236 ALDTLKKDGQCLVFESSRKNCMAFAKKAASTVKKTLSAEDRNALAGIADEILENSETDT- 294

Query: 785 KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIK 844
            S +L   +  G A HHAG+T   R+LVED F  G ++++ ST TLA G+NLPA  VII+
Sbjct: 295 -STNLAVCIRSGTAFHHAGLTTPLRELVEDGFRAGRIKLISSTPTLAAGLNLPARRVIIR 353

Query: 845 GTQIYNPEKGAWTELSPLDIM---QMLGRAGRPQYDSYGEGIII 885
             + Y+ E G    + P+ ++   QM GRAGRP+ D YGE +++
Sbjct: 354 NYRRYSSEDG----MQPIPVLEYKQMAGRAGRPRLDPYGEAVLV 393



 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 161/338 (47%), Gaps = 32/338 (9%)

Query: 1335 LYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAV 1394
            L  G     P Q +          N+L A PT SGKT+ +E A+L++          +A+
Sbjct: 17   LNSGIMELYPPQAEAVEKGLLEGRNLLAAIPTASGKTLLAELAMLKSILAGG-----KAL 71

Query: 1395 YIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSR 1454
            YI PL ALA E++R +  +F + LG+RV   TG+  +  + L    II++T EK D+L R
Sbjct: 72   YIVPLRALASEKFRRFR-EFSE-LGIRVGISTGDYDLRDEGLGVNDIIVATSEKTDSLLR 129

Query: 1455 RWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513
               +  ++Q++S+ + DE+HLI     GP LEV ++++R    ++    +I+ALS ++ N
Sbjct: 130  --NETVWMQEISVVVADEVHLIDSPDRGPTLEVTLAKLR----KMNPSCQILALSATVGN 183

Query: 1514 AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITN---FEARMQAMTKPTFTAIVQH 1570
            A +L  W+ A            RP  L   ++GV        + R + + + T    V  
Sbjct: 184  ADELAVWLEAEL-----VVSEWRPTEL---LEGVFFNGTFYCKDREKTVEQSTKDEAVNL 235

Query: 1571 A----KNEKPALVFVPSRKYVRLTAVDLMTY--SSMDGDQKSAFLLWPAEEVEPFIDNIQ 1624
            A    K +   LVF  SRK     A    +    ++  + ++A L   A+E+    +   
Sbjct: 236  ALDTLKKDGQCLVFESSRKNCMAFAKKAASTVKKTLSAEDRNA-LAGIADEILENSETDT 294

Query: 1625 EEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKI 1662
               L   +R G  + H GL    +E+V   F AG+IK+
Sbjct: 295  STNLAVCIRSGTAFHHAGLTTPLRELVEDGFRAGRIKL 332


>sp|Q0W6L1|HELS_UNCMA Putative ski2-type helicase OS=Uncultured methanogenic archaeon RC-I
            GN=UNCMA_22030 PE=3 SV=1
          Length = 740

 Score =  141 bits (356), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 149/595 (25%), Positives = 264/595 (44%), Gaps = 103/595 (17%)

Query: 492  GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNY 551
            G+ +L   Q+   +  L    N+L   PT +GKT +A + +L+ +A              
Sbjct: 20   GIPELYPPQAEAIRQGLLDGKNLLAAIPTASGKTLLAEMAMLKSIA-----------EGG 68

Query: 552  KIVYVAPMKALVAEVVGNL--SNRLQMY--DVKVRELSGDQTLTRQQIEETQIIVTTPEK 607
            K +Y+ P+KAL +E        ++L +    VKV   +GD     + + E  IIV T EK
Sbjct: 69   KAIYIVPLKALASEKYDRFLEFSKLPIKPDGVKVGIATGDFDSRDEYLGEKDIIVATSEK 128

Query: 608  WDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGL 666
             D + R     ++   + +++ DE+HL+   NRGP LE  +A+ +R+I     +++++ L
Sbjct: 129  TDSLLRNGA--SWLSGLSVVVADEVHLIDSPNRGPTLEVTLAK-LRKINV---NLQILAL 182

Query: 667  SATLPNYEDVALFLR----------VNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRF 716
            SAT+ N + +A ++             L++G+FY     R +   ++   +    P +  
Sbjct: 183  SATIGNAKALAKWMDAALVQSEWRPTTLKEGVFY----GRAITFKKEKRTVNNAGPDEVN 238

Query: 717  QLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDT------ALENDTLGRFLKED 770
             L+ D   E         Q L+F ++RK +   A+ +  +        E + L + LK+D
Sbjct: 239  SLVADTLEEG-------GQCLVFANTRKSSESIAQKVARSLSKKLQPAEKEQLAK-LKQD 290

Query: 771  SVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATL 830
             +       H +      L + +  G A HHAG+    R++VED F    ++V+  T TL
Sbjct: 291  VLR------HAETDTCEKLAECVGNGVAFHHAGLKGEHRRIVEDGFRQNILKVIACTPTL 344

Query: 831  AWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890
            A G+NLPA  VII+  + ++   G+   +  L+  QM GRAGRP+ D YGE ++I  + +
Sbjct: 345  AAGLNLPARRVIIRDYKRFDVNYGS-VPIPVLEYKQMAGRAGRPRLDPYGEAVLIAKNYD 403

Query: 891  LRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPAL 950
                            +F   + + +NA+    T +   E              +R  AL
Sbjct: 404  ----------------EFGELMENYINADPEHITSKLGTEPA------------MRAHAL 435

Query: 951  YGLAPEVLKE--------DIT-LGERRADLVHTAATILD---RNNLVKYDRKSGYFQVTD 998
              +A +  +         D T    +R DL H    +L+     N++  + K G  + TD
Sbjct: 436  SAVATDFCRSRQDLKAFMDTTFFAYQRGDLSHVIDNVLNFLLEENMI-IESKGGSLKATD 494

Query: 999  LGRIASYYYISHGTISTYNEHL-----KPTMGDIELCRLFSLSEEFKYVTVRQDE 1048
            LG + S  YI   + +   E L     +P + +  L  L   + + K + +R+ +
Sbjct: 495  LGSLVSKLYIDPLSAALIAEGLEKAKKRPDVAEFGLLHLICSTPDVKSLYLRRGD 549



 Score = 87.4 bits (215), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 106/193 (54%), Gaps = 17/193 (8%)

Query: 1337 QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI 1396
             G     P Q +          N+L A PT SGKT+ +E A+L++    +E G  +A+YI
Sbjct: 19   SGIPELYPPQAEAIRQGLLDGKNLLAAIPTASGKTLLAEMAMLKS---IAEGG--KAIYI 73

Query: 1397 APLEALAKERYRDWEIKFG----QGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDAL 1452
             PL+ALA E+Y D  ++F     +  G++V   TG+     + L +  II++T EK D+L
Sbjct: 74   VPLKALASEKY-DRFLEFSKLPIKPDGVKVGIATGDFDSRDEYLGEKDIIVATSEKTDSL 132

Query: 1453 SRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVENKIRIVALSTSL 1511
             R      ++  +S+ + DE+HLI     GP LEV ++++R    ++   ++I+ALS ++
Sbjct: 133  LRNGAS--WLSGLSVVVADEVHLIDSPNRGPTLEVTLAKLR----KINVNLQILALSATI 186

Query: 1512 ANAKDLGEWIGAT 1524
             NAK L +W+ A 
Sbjct: 187  GNAKALAKWMDAA 199


>sp|Q8PZR7|HELS_METMA Putative ski2-type helicase OS=Methanosarcina mazei (strain ATCC
           BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
           GN=MM_0425 PE=3 SV=1
          Length = 730

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 127/423 (30%), Positives = 207/423 (48%), Gaps = 58/423 (13%)

Query: 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNY 551
           G+ +L   Q+   +  L    N+L   PT +GKT +A L +L+ + LN            
Sbjct: 20  GILELYPPQAEAVEKGLLEGKNLLAAIPTASGKTLLAELAMLKSV-LNGG---------- 68

Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDV---KVRELSGDQTLTRQQIEETQIIVTTPEKW 608
           K +Y+ P++AL +E       R Q + V   +V   +GD     + +    IIV T EK 
Sbjct: 69  KALYIVPLRALASEKF----RRFQEFSVLGMRVGISTGDYDRRDEGLGINDIIVATSEKT 124

Query: 609 DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLS 667
           D + R   +  + Q + +++ DE+HL+   +RGP LE     T+ ++       +++ LS
Sbjct: 125 DSLLRN--ETAWMQEISVVVADEVHLIDSPDRGPTLEI----TLSKLRRMNPSCQVLALS 178

Query: 668 ATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ--YIGIQVKKPLQR--FQLMNDLC 723
           AT+ N +++A +L   L        + +RP  L +   Y GI   K  ++   Q   D  
Sbjct: 179 ATVGNADELAAWLDAEL------VLSEWRPTDLMEGVFYNGIFYCKDKEKPVGQPTKDEA 232

Query: 724 YEKVV-AVAGKHQVLIFVHSRKETA----KTARAIRDTALEND--TLGRFLKEDSVSREI 776
              V+  +    Q L+F  SRK       K   A++ T    D  TL        ++ EI
Sbjct: 233 VNLVLDTIKEGGQCLVFESSRKNCMGFAKKAVSAVKKTLSNEDRETLA------GIADEI 286

Query: 777 LQ-SHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVN 835
           ++ S TD+  S+ L   +  G A HHAG+T   R+LVE+ F +G ++++ ST TLA G+N
Sbjct: 287 IENSETDV--SSVLATCVRSGTAFHHAGLTTPLRELVENGFREGRIKIISSTPTLAAGLN 344

Query: 836 LPAHTVIIKGTQIYNPEKGAWTELSPLDIM---QMLGRAGRPQYDSYGEGIIITGHSELR 892
           LPA  VII+  + Y+ + G    + P+ ++   QM GRAGRP+ D YGE +++    E  
Sbjct: 345 LPARRVIIRSYRRYSSDSG----MQPIPVLEYKQMAGRAGRPRLDPYGEAVLLAKSYEEF 400

Query: 893 YYL 895
            +L
Sbjct: 401 VFL 403



 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 154/312 (49%), Gaps = 28/312 (8%)

Query: 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418
            N+L A PT SGKT+ +E A+L++          +A+YI PL ALA E++R ++ +F   L
Sbjct: 41   NLLAAIPTASGKTLLAELAMLKSVLNGG-----KALYIVPLRALASEKFRRFQ-EFSV-L 93

Query: 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478
            GMRV   TG+     + L    II++T EK D+L R   +  ++Q++S+ + DE+HLI  
Sbjct: 94   GMRVGISTGDYDRRDEGLGINDIIVATSEKTDSLLR--NETAWMQEISVVVADEVHLIDS 151

Query: 1479 -QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRP 1537
               GP LE+ +S++R    ++    +++ALS ++ NA +L  W+ A            RP
Sbjct: 152  PDRGPTLEITLSKLR----RMNPSCQVLALSATVGNADELAAWLDAEL-----VLSEWRP 202

Query: 1538 VPLEIHIQGVDITNFEARMQAMTKPT----FTAIVQHAKNEKPALVFVPSRKYV---RLT 1590
              L   +    I   + + + + +PT       ++   K     LVF  SRK        
Sbjct: 203  TDLMEGVFYNGIFYCKDKEKPVGQPTKDEAVNLVLDTIKEGGQCLVFESSRKNCMGFAKK 262

Query: 1591 AVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEV 1650
            AV  +  +  + D+++  L   A+E+    +     +L   +R G  + H GL    +E+
Sbjct: 263  AVSAVKKTLSNEDRET--LAGIADEIIENSETDVSSVLATCVRSGTAFHHAGLTTPLREL 320

Query: 1651 VSALFEAGKIKI 1662
            V   F  G+IKI
Sbjct: 321  VENGFREGRIKI 332


>sp|Q8TL39|HELS_METAC Putative ski2-type helicase OS=Methanosarcina acetivorans (strain
           ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=MA_3203 PE=3
           SV=1
          Length = 730

 Score =  139 bits (349), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 121/416 (29%), Positives = 206/416 (49%), Gaps = 44/416 (10%)

Query: 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNY 551
           G+ +L   Q+   +  L    N+L   PT +GKT +A L +L+ +            +  
Sbjct: 20  GIPELYPPQAEAVEKGLLEGKNLLAAIPTASGKTLLAELAMLKSVL-----------AGG 68

Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
           K +Y+ P++AL +E      +  ++  ++V   +GD     + +    IIV T EK D +
Sbjct: 69  KALYIVPLRALASEKFRRFQDFSEL-GIRVGISTGDYDRRDEGLGINDIIVATSEKTDSL 127

Query: 612 TRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670
            R   +  + Q + ++++DE+HL+   +RGP LE  +A+    +       +++ LSAT+
Sbjct: 128 LRN--ETAWMQEISVVVVDEVHLIDSADRGPTLEVTLAK----LRKMNPFCQILALSATV 181

Query: 671 PNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ--YIGIQVKKPLQRF--QLMNDLCYEK 726
            N +++A +L   L        + +RP  L +   + G    K  ++   Q   D     
Sbjct: 182 GNADELAAWLDAEL------VLSEWRPTDLMEGVFFDGTFFCKDKEKLIEQPTKDEAINL 235

Query: 727 VV-AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKED--SVSREILQ-SHTD 782
           V+  +    Q L+F  SRK     A+  + T+    TL    KE    ++ EIL+ S TD
Sbjct: 236 VLDTLREGGQCLVFESSRKNCMGFAK--KATSAVKKTLSAEDKEKLAGIADEILENSETD 293

Query: 783 MVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVI 842
              ++ L   +  G A HHAG+T   R+LVE  F +G+V+++ ST TLA G+NLPA  VI
Sbjct: 294 --TASVLASCVRAGTAFHHAGLTSPLRELVETGFREGYVKLISSTPTLAAGLNLPARRVI 351

Query: 843 IKGTQIYNPEKGAWTELSPLDIM---QMLGRAGRPQYDSYGEGIIITGHSELRYYL 895
           I+  + Y+ + G    + P+ ++   QM GRAGRP+ D YGE +++    E   +L
Sbjct: 352 IRSYRRYSSDSG----MQPIPVLEYKQMAGRAGRPRLDPYGEAVLLAKSYEELLFL 403



 Score =  101 bits (251), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 160/317 (50%), Gaps = 38/317 (11%)

Query: 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418
            N+L A PT SGKT+ +E A+L++          +A+YI PL ALA E++R ++  F + L
Sbjct: 41   NLLAAIPTASGKTLLAELAMLKSVLAGG-----KALYIVPLRALASEKFRRFQ-DFSE-L 93

Query: 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI-G 1477
            G+RV   TG+     + L    II++T EK D+L R   +  ++Q++S+ ++DE+HLI  
Sbjct: 94   GIRVGISTGDYDRRDEGLGINDIIVATSEKTDSLLR--NETAWMQEISVVVVDEVHLIDS 151

Query: 1478 GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRP 1537
               GP LEV ++++R    ++    +I+ALS ++ NA +L  W+ A            RP
Sbjct: 152  ADRGPTLEVTLAKLR----KMNPFCQILALSATVGNADELAAWLDAEL-----VLSEWRP 202

Query: 1538 VPLEIHIQGV--DITNF-EARMQAMTKPT----FTAIVQHAKNEKPALVFVPSRKYV--- 1587
              L   ++GV  D T F + + + + +PT       ++   +     LVF  SRK     
Sbjct: 203  TDL---MEGVFFDGTFFCKDKEKLIEQPTKDEAINLVLDTLREGGQCLVFESSRKNCMGF 259

Query: 1588 --RLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNK 1645
              + T+    T S+ D ++ +      A+E+    +     +L + +R G  + H GL  
Sbjct: 260  AKKATSAVKKTLSAEDKEKLAGI----ADEILENSETDTASVLASCVRAGTAFHHAGLTS 315

Query: 1646 TDQEVVSALFEAGKIKI 1662
              +E+V   F  G +K+
Sbjct: 316  PLRELVETGFREGYVKL 332


>sp|Q12WZ6|HELS_METBU Putative ski2-type helicase OS=Methanococcoides burtonii (strain
           DSM 6242) GN=Mbur_1102 PE=3 SV=1
          Length = 760

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 128/471 (27%), Positives = 221/471 (46%), Gaps = 59/471 (12%)

Query: 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNY 551
           G+ +L   Q+   +  L    N+L   PT +GKT +A L +++ +               
Sbjct: 20  GIKELYPPQAEAIEMGLLEKKNLLAAIPTASGKTLLAELAMIKAI-----------REGG 68

Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
           K +Y+ P++AL +E        L  + +KV   +GD       +    IIV T EK D +
Sbjct: 69  KALYIVPLRALASEKFERF-KELAPFGIKVGISTGDLDSRADWLGVNDIIVATSEKTDSL 127

Query: 612 TRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670
            R     ++   +  +++DEIHLL   NRGP LE  + + +R        +++V LSAT+
Sbjct: 128 LRNG--TSWMDEITTVVVDEIHLLDSKNRGPTLEVTITKLMR----LNPDVQVVALSATV 181

Query: 671 PNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQ--------QYIGIQVKKPLQRFQLMNDL 722
            N  ++A +L      G     + +RP  L +         + G Q  K + R +  +D 
Sbjct: 182 GNAREMADWL------GAALVLSEWRPTDLHEGVLFGDAINFPGSQ--KKIDRLE-KDDA 232

Query: 723 CYEKVVAVAGKHQVLIFVHSRKETA---KTARAIRDTALENDTLGRFLKEDSVSREILQS 779
               +  +  + Q L+F  SR+  A   KTA +     L+ND +   +K   ++ E+ +S
Sbjct: 233 VNLVLDTIKAEGQCLVFESSRRNCAGFAKTASSKVAKILDNDIM---IKLAGIAEEV-ES 288

Query: 780 HTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAH 839
             +   +  L + +  G A HHAG+    R+LVE+ F    ++V+ ST TLA G+NLPA 
Sbjct: 289 TGETDTAIVLANCIRKGVAFHHAGLNSNHRKLVENGFRQNLIKVISSTPTLAAGLNLPAR 348

Query: 840 TVIIKGTQIYNPEKGAWTELSPLDIM---QMLGRAGRPQYDSYGEGIIITGHSELRYYLS 896
            VII+  + ++   G    + P+ ++   QM GRAGRP  D YGE +++    +   +  
Sbjct: 349 RVIIRSYRRFDSNFG----MQPIPVLEYKQMAGRAGRPHLDPYGESVLLAKTYD--EFAQ 402

Query: 897 LMNQQLPIESQFV-SKLADQ------LNAEIVLGTVQNAKEACNWIGYTYL 940
           LM   +  +++ + SKL  +      + + IV G     +E  ++ G T+ 
Sbjct: 403 LMENYVEADAEDIWSKLGTENALRTHVLSTIVNGFASTRQELFDFFGATFF 453



 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 156/338 (46%), Gaps = 36/338 (10%)

Query: 1337 QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI 1396
             G K   P Q +   +      N+L A PT SGKT+ +E A+++  ++       +A+YI
Sbjct: 19   SGIKELYPPQAEAIEMGLLEKKNLLAAIPTASGKTLLAELAMIKAIREGG-----KALYI 73

Query: 1397 APLEALAKERYRDWE--IKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSR 1454
             PL ALA E++  ++    FG  +G+     TG+       L    II++T EK D+L R
Sbjct: 74   VPLRALASEKFERFKELAPFGIKVGIS----TGDLDSRADWLGVNDIIVATSEKTDSLLR 129

Query: 1455 RWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513
                  ++ +++  ++DE+HL+  +  GP LEV ++++  +   V+    +VALS ++ N
Sbjct: 130  --NGTSWMDEITTVVVDEIHLLDSKNRGPTLEVTITKLMRLNPDVQ----VVALSATVGN 183

Query: 1514 AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTK----PTFTAIVQ 1569
            A+++ +W+GA            RP  L   +   D  NF    + + +         ++ 
Sbjct: 184  AREMADWLGAAL-----VLSEWRPTDLHEGVLFGDAINFPGSQKKIDRLEKDDAVNLVLD 238

Query: 1570 HAKNEKPALVFVPSRKYVRLTAVDLMTYSS-----MDGDQKSAFLLWPAEEVEPFIDNIQ 1624
              K E   LVF  SR   R  A    T SS     +D D     L   AEEVE   +   
Sbjct: 239  TIKAEGQCLVFESSR---RNCAGFAKTASSKVAKILDNDIMIK-LAGIAEEVESTGETDT 294

Query: 1625 EEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKI 1662
              +L   +R GV + H GLN   +++V   F    IK+
Sbjct: 295  AIVLANCIRKGVAFHHAGLNSNHRKLVENGFRQNLIKV 332


>sp|Q8TDG4|HELQ_HUMAN Helicase POLQ-like OS=Homo sapiens GN=HELQ PE=1 SV=2
          Length = 1101

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 149/567 (26%), Positives = 256/567 (45%), Gaps = 89/567 (15%)

Query: 479  ISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLAL 538
            I ++ EW          LN VQ R          N++   PT  GKT VA + +LQ+L  
Sbjct: 333  IEKLYEWQHTCL----TLNSVQER---------KNLIYSLPTSGGKTLVAEILMLQELLC 379

Query: 539  NRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL--TRQQIE 596
             R D          ++ + P  A+V E +  LS+        V E +G +      ++ E
Sbjct: 380  CRKD----------VLMILPYVAIVQEKISGLSSFGIELGFFVEEYAGSKGRFPPTKRRE 429

Query: 597  ETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIE 655
            +  + + T EK   +     +      + L+++DE+H++ + +RG  LE  +A+ +   +
Sbjct: 430  KKSLYIATIEKGHSLVNSLIETGRIDSLGLVVVDELHMIGEGSRGATLEMTLAKILYTSK 489

Query: 656  TTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGI-------- 707
            TT+    ++G+SATL N ED+  FL+        Y+ + +RPV L ++Y+ I        
Sbjct: 490  TTQ----IIGMSATLNNVEDLQKFLQAE------YYTSQFRPVEL-KEYLKINDTIYEVD 538

Query: 708  -QVKKPLQRFQLMN------------DLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIR 754
             + +  +   +L+N            D     V  V   +  L+F  S+K     A  I 
Sbjct: 539  SKAENGMTFSRLLNYKYSDTLKKMDPDHLVALVTEVIPNYSCLVFCPSKKNCENVAEMIC 598

Query: 755  DTALENDTLGRFLKEDSVSREILQSHTDMVKSN---DLKDLLPYGFAIHHAGMTRGDRQL 811
               L  + L    KE     E++++  ++   N    LK  +P+G A HH+G+T  +R+L
Sbjct: 599  K-FLSKEYLKHKEKEKC---EVIKNLKNIGNGNLCPVLKRTIPFGVAYHHSGLTSDERKL 654

Query: 812  VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871
            +E+ +  G + +   T+TLA GVNLPA  VI++   +      A   L      QM+GRA
Sbjct: 655  LEEAYSTGVLCLFTCTSTLAAGVNLPARRVILRAPYV------AKEFLKRNQYKQMIGRA 708

Query: 872  GRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEI--VLGTVQNAK 929
            GR   D+ GE I+I    + +  L L+ +  P+E+ + S L  +    I  +  ++   K
Sbjct: 709  GRAGIDTIGESILILQEKDKQQVLELITK--PLENCY-SHLVQEFTKGIQTLFLSLIGLK 765

Query: 930  EACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVH--TAATILDRNNLVKY 987
             A N        I    N   +G+  +VL ++ +L E   + +   T   +L ++ + K 
Sbjct: 766  IATNLDD-----IYHFMNGTFFGVQQKVLLKEKSLWEITVESLRYLTEKGLLQKDTIYKS 820

Query: 988  DRKSGY-FQVTDLGRIASYYYISHGTI 1013
            + +  Y F +T LGR AS+     GTI
Sbjct: 821  EEEVQYNFHITKLGR-ASF----KGTI 842



 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 142/330 (43%), Gaps = 51/330 (15%)

Query: 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418
            N++ + PT  GKT+ +E  +L+      +  +M    I P  A+ +E+       FG  L
Sbjct: 354  NLIYSLPTSGGKTLVAEILMLQELLCCRKDVLM----ILPYVAIVQEKISGLS-SFGIEL 408

Query: 1419 GMRVVELTGETAM--DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 1476
            G  V E  G        K  EK  + I+T EK  +L     +   +  + L ++DELH+I
Sbjct: 409  GFFVEEYAGSKGRFPPTKRREKKSLYIATIEKGHSLVNSLIETGRIDSLGLVVVDELHMI 468

Query: 1477 G-GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGV 1535
            G G  G  LE+ ++++ Y +   +    I+ +S +L N +DL +++ A       +    
Sbjct: 469  GEGSRGATLEMTLAKILYTSKTTQ----IIGMSATLNNVEDLQKFLQAEY-----YTSQF 519

Query: 1536 RPVPLEIHIQGVDITNFEARMQAMTKPTFT--------------------AIVQHAKNEK 1575
            RPV L+ +++ ++ T +E   +A    TF+                    A+V       
Sbjct: 520  RPVELKEYLK-INDTIYEVDSKAENGMTFSRLLNYKYSDTLKKMDPDHLVALVTEVIPNY 578

Query: 1576 PALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQE-------EML 1628
              LVF PS+K     A  +  + S +      +L    +E    I N++         +L
Sbjct: 579  SCLVFCPSKKNCENVAEMICKFLSKE------YLKHKEKEKCEVIKNLKNIGNGNLCPVL 632

Query: 1629 KATLRHGVGYLHEGLNKTDQEVVSALFEAG 1658
            K T+  GV Y H GL   +++++   +  G
Sbjct: 633  KRTIPFGVAYHHSGLTSDERKLLEEAYSTG 662


>sp|Q2VPA6|HELQ_MOUSE Helicase POLQ-like OS=Mus musculus GN=Helq PE=2 SV=2
          Length = 1069

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 133/529 (25%), Positives = 250/529 (47%), Gaps = 84/529 (15%)

Query: 513  NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572
            N++   PT  GKT VA + +LQ+L   + D          ++ + P  A+V E + +LS+
Sbjct: 313  NLIYSLPTSGGKTLVAEILMLQELLCRQKD----------VLMILPYVAIVQEKISSLSS 362

Query: 573  RLQMYDVKVRELSGDQ----TLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLI 628
                    V E +G +     + R+  E+  + + T EK   +     + +    + L++
Sbjct: 363  FGIELGFFVEEYAGSKGRFPPIKRR--EKKSLYIATIEKAHSLVNALIETSRLSTLGLVV 420

Query: 629  IDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKG 687
            +DE+H++ + +RG +LE  +A+ +   +TT+    ++G+SATL N ED+  FL+      
Sbjct: 421  VDELHMIGEGSRGAILEMTLAKVLYTSKTTQ----IIGMSATLNNVEDLQAFLKAE---- 472

Query: 688  LFYFDNSYRPVPL--------------SQQYIGIQVKKPL-----QRFQLMN-DLCYEKV 727
              Y+ + +RPV L              SQ   G+   + L     +  + M+ D     V
Sbjct: 473  --YYTSQFRPVELKEFLKVNDTIYEVDSQAADGMTFSRLLSYKYSEALKKMDPDRLVALV 530

Query: 728  VAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSR------EILQSHT 781
              V   +  L+F  S+K     A          + L +FL +D ++       E+++S  
Sbjct: 531  TEVIPNYSCLVFCPSKKNCENVA----------EMLCKFLSKDYLNHREKEKCEVIKSLR 580

Query: 782  DMVKSND---LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPA 838
            ++        LK  +P+G A HH+G+T  +R+L+E+ +  G + +L  T+TLA GVNLPA
Sbjct: 581  NIGNGKVCPVLKRTVPFGIAYHHSGLTSEERKLLEEAYSTGVLCLLTCTSTLAAGVNLPA 640

Query: 839  HTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLM 898
              VI++   + N      T L      QM+GRAGR   D+ GE I++    + +  L L+
Sbjct: 641  RRVILRAPYVAN------TFLKRNQYKQMVGRAGRAGIDTAGESILLLQEKDKQQVLELI 694

Query: 899  NQQLPIESQFVSKLADQLNAEI--VLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPE 956
            +   P+E+   S L ++    I  +  ++   K A + +G  Y ++    +   +G+  +
Sbjct: 695  SG--PLET-CCSHLVEEFTKGIQALFLSLIGLKIAAS-LGDIYQFM----SGTFFGVQQK 746

Query: 957  VLKEDITLGERRADLVH--TAATILDRNNLVKYDRKSGYFQVTDLGRIA 1003
            +L ++ +L E   D +   T   +L +++    +    +F++T LG+ +
Sbjct: 747  ILLKEKSLWEITVDALEHLTEKGLLQKDSCGDNEGLECHFRITKLGQAS 795



 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 144/330 (43%), Gaps = 51/330 (15%)

Query: 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418
            N++ + PT  GKT+ +E  +L+      +  +M    I P  A+ +E+       FG  L
Sbjct: 313  NLIYSLPTSGGKTLVAEILMLQELLCRQKDVLM----ILPYVAIVQEKISSLS-SFGIEL 367

Query: 1419 GMRVVELTGETAM--DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 1476
            G  V E  G       +K  EK  + I+T EK  +L     +   +  + L ++DELH+I
Sbjct: 368  GFFVEEYAGSKGRFPPIKRREKKSLYIATIEKAHSLVNALIETSRLSTLGLVVVDELHMI 427

Query: 1477 G-GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGV 1535
            G G  G +LE+ ++++ Y +   +    I+ +S +L N +DL  ++ A       +    
Sbjct: 428  GEGSRGAILEMTLAKVLYTSKTTQ----IIGMSATLNNVEDLQAFLKAE-----YYTSQF 478

Query: 1536 RPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEK-------------------- 1575
            RPV L+  ++ V+ T +E   QA    TF+ ++ +  +E                     
Sbjct: 479  RPVELKEFLK-VNDTIYEVDSQAADGMTFSRLLSYKYSEALKKMDPDRLVALVTEVIPNY 537

Query: 1576 PALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQE-------EML 1628
              LVF PS+K     A  L  + S D      +L    +E    I +++         +L
Sbjct: 538  SCLVFCPSKKNCENVAEMLCKFLSKD------YLNHREKEKCEVIKSLRNIGNGKVCPVL 591

Query: 1629 KATLRHGVGYLHEGLNKTDQEVVSALFEAG 1658
            K T+  G+ Y H GL   +++++   +  G
Sbjct: 592  KRTVPFGIAYHHSGLTSEERKLLEEAYSTG 621


>sp|Q5JGV6|HELS_PYRKO Putative ski2-type helicase OS=Pyrococcus kodakaraensis (strain ATCC
            BAA-918 / JCM 12380 / KOD1) GN=TK1332 PE=3 SV=1
          Length = 1125

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 101/332 (30%), Positives = 167/332 (50%), Gaps = 30/332 (9%)

Query: 1337 QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI 1396
            +G +   P Q +          N+++A PT SGKT+ SE  ++  ++  SE G  +AVY+
Sbjct: 19   RGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVSEIVMV--NKLLSEGG--KAVYL 74

Query: 1397 APLEALAKERYRD---WEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALS 1453
             PL+ALA+E+YR+   WE+     LG+RV   TG+     + L +  II++T EK+D+L 
Sbjct: 75   VPLKALAEEKYREFKEWEV-----LGLRVAATTGDYDSTDEWLGRYDIIVATAEKFDSLL 129

Query: 1454 RRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512
            R      +++ V L + DE+HLIG    G  LE+I++ M         K +I+ALS ++ 
Sbjct: 130  RHGAS--WIKDVKLVVADEVHLIGSYDRGATLEMILTHML-------GKAQILALSATVG 180

Query: 1513 NAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFE-ARMQAMTKPTFTAIVQHA 1571
            NA++L EW+ A+           RPV L   +  +    +E  ++    +   + ++   
Sbjct: 181  NAEELAEWLDASL-----VVSDWRPVELRKGVFHLGQLFWEDGKIDHYPENWESLVLDAV 235

Query: 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKAT 1631
            K  K ALVFV +R+     A+ L +  S    +     L   E +    DN   E LK  
Sbjct: 236  KKGKQALVFVNTRRSAEKEAISLSSKVSKLLTKPETRRL--EELISSIEDNPTTEKLKRA 293

Query: 1632 LRHGVGYLHEGLNKTDQEVVSALFEAGKIKIC 1663
            L+ GV + H GL++ ++ ++   F  G IK+ 
Sbjct: 294  LKGGVAFHHAGLSRAERTLIEDAFRNGLIKVI 325



 Score =  112 bits (279), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 172/351 (49%), Gaps = 47/351 (13%)

Query: 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
           +G+ +L   Q+   KS +    N++L  PT +GKT V+ + ++ +L    ++ G      
Sbjct: 19  RGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVSEIVMVNKLL---SEGG------ 69

Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
            K VY+ P+KAL  E         ++  ++V   +GD   T + +    IIV T EK+D 
Sbjct: 70  -KAVYLVPLKALAEEKYREFKE-WEVLGLRVAATTGDYDSTDEWLGRYDIIVATAEKFDS 127

Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
           + R     ++ + VKL++ DE+HL+   +RG  LE I+   + + +       ++ LSAT
Sbjct: 128 LLRHGA--SWIKDVKLVVADEVHLIGSYDRGATLEMILTHMLGKAQ-------ILALSAT 178

Query: 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDL-----CY 724
           + N E++A +L  +L        + +RPV L +    +      Q F     +      +
Sbjct: 179 VGNAEELAEWLDASL------VVSDWRPVELRKGVFHLG-----QLFWEDGKIDHYPENW 227

Query: 725 EKVV--AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSR--EILQSH 780
           E +V  AV    Q L+FV++R+   K A ++      +  + + L +    R  E++ S 
Sbjct: 228 ESLVLDAVKKGKQALVFVNTRRSAEKEAISL------SSKVSKLLTKPETRRLEELISSI 281

Query: 781 TDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLA 831
            D   +  LK  L  G A HHAG++R +R L+ED F +G ++V+ +T TL 
Sbjct: 282 EDNPTTEKLKRALKGGVAFHHAGLSRAERTLIEDAFRNGLIKVITATPTLC 332



 Score = 60.8 bits (146), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 37/53 (69%), Gaps = 2/53 (3%)

Query: 833 GVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885
           G+NLPA  VII+ T+ Y      WT++  L+I QM+GRAGRP+YD  GE II+
Sbjct: 737 GINLPAFRVIIRDTKRY--ANFGWTDIPVLEIQQMMGRAGRPKYDKVGEAIIV 787


>sp|Q58524|HELS_METJA Putative ski2-type helicase OS=Methanocaldococcus jannaschii
           (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
           100440) GN=MJ1124 PE=3 SV=1
          Length = 1195

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 174/364 (47%), Gaps = 53/364 (14%)

Query: 492 GMTQLNRVQSRVYKSALSSAD-NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
           G+ +L   Q +  +  L   + N L+  PT +GKT +  + ++  L      DG+ N +N
Sbjct: 12  GIVELRPPQKKALERGLLDKNKNFLISIPTASGKTLIGEMALINHLL-----DGNKNPTN 66

Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
            K +++ P+KAL +E      ++ + Y +++    GD     + + +  +I+TT EK D 
Sbjct: 67  KKGIFIVPLKALASEKYEEFKSKYERYGLRIALSIGDYD-EDEDLSKYHLIITTAEKLDS 125

Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
           + R   D  +   V ++++DEIHL++D  RG  LE ++ +        + +++++GLSAT
Sbjct: 126 LWRHKID--WINDVSVVVVDEIHLINDETRGGTLEILLTKL------KEFNVQIIGLSAT 177

Query: 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQ--------LMND 721
           + N +++A +L   L        + +RPV L +   GI   + ++           + N+
Sbjct: 178 IGNPDELAEWLNAEL------IVDDWRPVELKK---GIYKNEAIEFINGEIREIKAVDNN 228

Query: 722 LCYEKVV-AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSR------ 774
             Y  VV  V      L+F ++++     A+ +         L +FL E+   R      
Sbjct: 229 DIYNLVVDCVKEGGCCLVFCNTKRNAVNEAKKL--------NLKKFLTEEEKIRLKEIAE 280

Query: 775 ---EILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLA 831
               IL+  T+M K+  L + +  G A HHAG+T   R++VED F    ++V+  T TL 
Sbjct: 281 EILSILEPPTEMCKT--LAECILNGSAFHHAGLTYQHRKIVEDAFRKRLIKVICCTPTLC 338

Query: 832 WGVN 835
              N
Sbjct: 339 LNAN 342



 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 172/356 (48%), Gaps = 42/356 (11%)

Query: 1319 LQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAI 1378
            L+   +  LR P  +AL +G              L + + N L++ PT SGKT+  E A+
Sbjct: 8    LKDFGIVELRPPQKKALERG--------------LLDKNKNFLISIPTASGKTLIGEMAL 53

Query: 1379 LRNHQKASETGV-MRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLE 1437
            + +    ++     + ++I PL+ALA E+Y +++ K+ +  G+R+    G+   D + L 
Sbjct: 54   INHLLDGNKNPTNKKGIFIVPLKALASEKYEEFKSKY-ERYGLRIALSIGDYDED-EDLS 111

Query: 1438 KGQIIISTPEKWDALSRRWKQR-KYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIA 1495
            K  +II+T EK D+L   W+ +  ++  VS+ ++DE+HLI  +  G  LE+++++++   
Sbjct: 112  KYHLIITTAEKLDSL---WRHKIDWINDVSVVVVDEIHLINDETRGGTLEILLTKLK--- 165

Query: 1496 SQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHI---QGVDITNF 1552
               E  ++I+ LS ++ N  +L EW+ A            RPV L+  I   + ++  N 
Sbjct: 166  ---EFNVQIIGLSATIGNPDELAEWLNAEL-----IVDDWRPVELKKGIYKNEAIEFING 217

Query: 1553 EAR-MQAM-TKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLL 1610
            E R ++A+     +  +V   K     LVF  +++     A  L     +  ++K   L 
Sbjct: 218  EIREIKAVDNNDIYNLVVDCVKEGGCCLVFCNTKRNAVNEAKKLNLKKFLTEEEKIR-LK 276

Query: 1611 WPAEEVEPFIDNIQE--EMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIK-IC 1663
              AEE+   ++   E  + L   + +G  + H GL    +++V   F    IK IC
Sbjct: 277  EIAEEILSILEPPTEMCKTLAECILNGSAFHHAGLTYQHRKIVEDAFRKRLIKVIC 332



 Score = 51.2 bits (121), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 6/99 (6%)

Query: 833 GVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE-- 890
           G+NLP    I+K    +  +   +  +  ++I Q +GRAGRP  D YGEGII+  +    
Sbjct: 841 GLNLPCRRAIVKDLTRFTNKGMRYIPI--MEIQQCIGRAGRPGLDPYGEGIIVAKNDRDY 898

Query: 891 LRYYLSLMNQQLPIESQFVSK--LADQLNAEIVLGTVQN 927
           LR Y +L  +  PI S+  ++  L  QL   I  G +++
Sbjct: 899 LRAYQALTQKPEPIYSKLSNQAVLRTQLLGLIATGEIRD 937


>sp|Q914M3|Y007_SIFVH Putative helicase 7 OS=Sulfolobus islandicus filamentous virus
           (isolate Iceland/Hveragerdi) GN=SIFV0007 PE=4 SV=1
          Length = 601

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 106/413 (25%), Positives = 181/413 (43%), Gaps = 90/413 (21%)

Query: 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIV 554
           QLN  Q +  +S L S  N+L+ APTG GK+ +A+L  ++              +  ++V
Sbjct: 7   QLNEFQKKALQSFLMSDKNLLITAPTGTGKSFLAMLMAME--------------TKSRVV 52

Query: 555 YVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIE------ETQIIVTTPEKW 608
           Y  P++AL  ++  +  N++      V   +    LT +  E      E ++I TT EK 
Sbjct: 53  YTVPLRALALQLNDDFHNKVAPL---VNGYADSVALTSEVYEEDPENLEERVIFTTYEKA 109

Query: 609 DIITRKSGDRTYTQLVKLLIIDEIHLLHDN-RGPVLESIVARTVRQIETTKEHIRLVGLS 667
           D I R+     +T  ++ LIIDEIH + D  RG  +E+++A  +       E IR+V +S
Sbjct: 110 DAIFRRH--YPWTDRIETLIIDEIHNIGDKERGKAIENLIAYAMN------EGIRIVAMS 161

Query: 668 ATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL-----QRFQLMNDL 722
           AT+P+   +A  +   + K         RP+PL   Y  +++   L        +L  D 
Sbjct: 162 ATIPDVNKIAEIIDAEIIK------TDERPIPL---YKAVKIGNKLYFEDGDVIELKEDF 212

Query: 723 CYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTD 782
             + V     K++V++   S ++ A+    I D   +N                      
Sbjct: 213 IKKMV----RKNKVVMIFTSTRKKAEELYMIYDRKFQNKV-------------------- 248

Query: 783 MVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVI 842
                          A  HAG+    +  + +    G   ++VST  L+ GVN P + V+
Sbjct: 249 ---------------AFFHAGLDAETKLRLLEETRQGKYNIIVSTTALSQGVNFPFYAVV 293

Query: 843 IKGTQIYNPEKG---AWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR 892
               ++   E G    W +++P++  Q+ GRAGRP YD   EG+ I   +++R
Sbjct: 294 FDDLKLPIIEYGRFTGWKQITPIEFDQICGRAGRPGYDE--EGLCIIEATDIR 344



 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 83/178 (46%), Gaps = 27/178 (15%)

Query: 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLE 1400
              N  Q +       +D N+L+ APTG+GK+     A+L   +  S     R VY  PL 
Sbjct: 7    QLNEFQKKALQSFLMSDKNLLITAPTGTGKSF---LAMLMAMETKS-----RVVYTVPLR 58

Query: 1401 ALAKERYRDWEIKFGQGLGMRV--VELTGET-AMDLKLLEKGQIIISTPEKWDALSRR-- 1455
            ALA +   D+  K    +      V LT E    D + LE+ ++I +T EK DA+ RR  
Sbjct: 59   ALALQLNDDFHNKVAPLVNGYADSVALTSEVYEEDPENLEE-RVIFTTYEKADAIFRRHY 117

Query: 1456 -WKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQVENKIRIVALSTSL 1511
             W  R     +   IIDE+H IG  + G  +E        IA  +   IRIVA+S ++
Sbjct: 118  PWTDR-----IETLIIDEIHNIGDKERGKAIE------NLIAYAMNEGIRIVAMSATI 164


>sp|Q10701|HELY_MYCTU Probable helicase HelY OS=Mycobacterium tuberculosis GN=helY PE=3
           SV=1
          Length = 906

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 139/541 (25%), Positives = 221/541 (40%), Gaps = 108/541 (19%)

Query: 506 SALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565
           SAL     +L+CAPTGAGKT V    +   LA           +  K  Y  P+KAL  +
Sbjct: 27  SALERGHGVLVCAPTGAGKTVVGEFAVHLALA-----------AGSKCFYTTPLKALSNQ 75

Query: 566 VVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS--GDRTYTQL 623
              +L+ R     + +  L+GD ++         ++V T E    + R     D    Q 
Sbjct: 76  KHTDLTARYGRDQIGL--LTGDLSVN----GNAPVVVMTTE----VLRNMLYADSPALQG 125

Query: 624 VKLLIIDEIHLLHDN-RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV 682
           +  +++DE+H L D  RGPV E ++ +         + +R+V LSAT+ N E+   +++ 
Sbjct: 126 LSYVVMDEVHFLADRMRGPVWEEVILQL-------PDDVRVVSLSATVSNAEEFGGWIQT 178

Query: 683 NLEKGLFYFDNSYRPVPLSQQY-------------IGIQVKKPLQRFQLMNDLCYEK--- 726
                    D  +RPVPL Q               IG    +P    +L+  + + +   
Sbjct: 179 VRGDTTVVVDE-HRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRELLRHIAHRREAD 237

Query: 727 -------------------------VVA---VAGKHQVLIFVHSRKET-AKTARAIRDTA 757
                                    V+A     G    + FV SR    A   + +R   
Sbjct: 238 RMADWQPRRRGSGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPL 297

Query: 758 LENDTLGRFLKEDSVSR--EILQSHTDMVKSNDLKDLLPY--------GFAIHHAGMTRG 807
                  R   E+  +R  E++      +  +DL  L  Y        G A HHAGM   
Sbjct: 298 -------RLTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPA 350

Query: 808 DRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQM 867
            R  VE+LF  G V+ + +T TLA G+N+PA TV+++    +N E+     L+P +  Q+
Sbjct: 351 FRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQ--HMPLTPGEYTQL 408

Query: 868 LGRAGRPQYDSYGEGIII----TGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLG 923
            GRAGR   D  G  ++I       SE+    S   +  P+ S F    A   N  I L 
Sbjct: 409 TGRAGRRGIDVEGHAVVIWHPEIEPSEVAGLAS--TRTFPLRSSF----APSYNMTINLV 462

Query: 924 TVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNN 983
                ++A   +  ++   +  R+  + GL   + + +  LGE  A+L  + A IL+   
Sbjct: 463 HRMGPQQAHRLLEQSFAQYQADRS--VVGLVRGIERGNRILGEIAAELGGSDAPILEYAR 520

Query: 984 L 984
           L
Sbjct: 521 L 521



 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 94/188 (50%), Gaps = 24/188 (12%)

Query: 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG- 1417
             VLV APTG+GKT+  EFA+       S     +  Y  PL+AL+ +++ D   ++G+  
Sbjct: 34   GVLVCAPTGAGKTVVGEFAVHLALAAGS-----KCFYTTPLKALSNQKHTDLTARYGRDQ 88

Query: 1418 LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477
            +G+    LTG    DL +     +++ T E    +   +     +Q +S  ++DE+H + 
Sbjct: 89   IGL----LTG----DLSVNGNAPVVVMTTEVLRNML--YADSPALQGLSYVVMDEVHFLA 138

Query: 1478 GQ-GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVR 1536
             +  GPV E ++        Q+ + +R+V+LS +++NA++ G WI              R
Sbjct: 139  DRMRGPVWEEVI-------LQLPDDVRVVSLSATVSNAEEFGGWIQTVRGDTTVVVDEHR 191

Query: 1537 PVPLEIHI 1544
            PVPL  H+
Sbjct: 192  PVPLWQHV 199


>sp|O13799|YE02_SCHPO Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=SPAC17H9.02 PE=1 SV=1
          Length = 1030

 Score =  105 bits (261), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 119/469 (25%), Positives = 205/469 (43%), Gaps = 88/469 (18%)

Query: 461 HVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPT 520
           ++P  KH P DP               PA     +L+  QS   K  +   +++L+ A T
Sbjct: 106 YIPLNKHIPSDP---------------PAKTYPFELDPFQSTAIK-CVERMESVLVSAHT 149

Query: 521 GAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVK 580
            AGKT +A   I Q L  NR           +++Y +P+K+L  +    L +  +  DV 
Sbjct: 150 SAGKTVIAEYAIAQALK-NRQ----------RVIYTSPIKSLSNQKYRELLS--EFGDVG 196

Query: 581 VRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NR 639
           +  ++GD ++          ++ T E    +  K+ +  +   +  +I DE+H + D +R
Sbjct: 197 L--MTGDVSIN----PSASCLIMTTEILRAMLYKNSEIMHE--IAWVIFDEVHYMRDKDR 248

Query: 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVP 699
           G V E  +           + IR + LSATLPN    A ++    ++        YRP P
Sbjct: 249 GVVWEETLI-------LLPDAIRFIFLSATLPNALQFARWISEIHKQPCHVVYTDYRPTP 301

Query: 700 LSQQYI------GIQV------KKPLQRFQLMNDLC---------------------YEK 726
           L Q +I      GI +      K   + F+ + ++                       E+
Sbjct: 302 L-QHFIYPQGADGIYMLVDEKNKFKTENFKKVLEVLDHSTRQENYSKSSKKVKKSSSLER 360

Query: 727 VVAVAGKHQ---VLIFVHSRKETAKTARAIRDTALENDTLGRFLKE---DSVSREILQSH 780
           ++ +   ++   +++F  S+KE    A       L NDT  + L     DS   ++ +  
Sbjct: 361 IINMVLSNRYDPIIVFCFSKKECEINAHQFGKLDL-NDTENKELVTEIFDSAINQLSEED 419

Query: 781 TDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHT 840
             + +  +++ LL  G  IHH+G+    ++LVE LF +G V++L +T T + G+N+PA T
Sbjct: 420 RGLRQFEEMRSLLLRGIGIHHSGLLPILKELVEILFQEGLVRILFATETFSIGLNMPART 479

Query: 841 VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889
           V+    Q ++     W  L+  + MQM GRAGR   D+ G  I+I   S
Sbjct: 480 VLFTKAQKFSGNNFRW--LTSGEYMQMSGRAGRRGIDTKGLSIVILDQS 526



 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 153/358 (42%), Gaps = 85/358 (23%)

Query: 1358 DNVLVAAPTGSGKTICSEFAI---LRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKF 1414
            ++VLV+A T +GKT+ +E+AI   L+N Q        R +Y +P+++L+ ++YR+   +F
Sbjct: 141  ESVLVSAHTSAGKTVIAEYAIAQALKNRQ--------RVIYTSPIKSLSNQKYRELLSEF 192

Query: 1415 GQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH 1474
            G  +G+    +TG+ +++         +I T E   A+   +K  + + +++  I DE+H
Sbjct: 193  G-DVGL----MTGDVSIN----PSASCLIMTTEILRAM--LYKNSEIMHEIAWVIFDEVH 241

Query: 1475 LIGGQGGPVL--EVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGAT----SHGL 1528
             +  +   V+  E ++         + + IR + LS +L NA     WI        H +
Sbjct: 242  YMRDKDRGVVWEETLI--------LLPDAIRFIFLSATLPNALQFARWISEIHKQPCHVV 293

Query: 1529 FNFPPGVRPVPLE--IHIQGVD-------------ITNFEARMQAMTKPT---------- 1563
            +      RP PL+  I+ QG D               NF+  ++ +   T          
Sbjct: 294  YT---DYRPTPLQHFIYPQGADGIYMLVDEKNKFKTENFKKVLEVLDHSTRQENYSKSSK 350

Query: 1564 -------FTAIVQHAKNEK--PALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAE 1614
                      I+    + +  P +VF  S+K   + A         D + K        E
Sbjct: 351  KVKKSSSLERIINMVLSNRYDPIIVFCFSKKECEINAHQFGKLDLNDTENKELV----TE 406

Query: 1615 EVEPFIDNIQE--------EMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICY 1664
              +  I+ + E        E +++ L  G+G  H GL    +E+V  LF+ G ++I +
Sbjct: 407  IFDSAINQLSEEDRGLRQFEEMRSLLLRGIGIHHSGLLPILKELVEILFQEGLVRILF 464


>sp|Q58796|Y1401_METJA Probable ATP-dependent helicase MJ1401 OS=Methanocaldococcus
           jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
           10045 / NBRC 100440) GN=MJ1401 PE=3 SV=1
          Length = 808

 Score = 95.5 bits (236), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 111/447 (24%), Positives = 192/447 (42%), Gaps = 87/447 (19%)

Query: 444 DLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRV 503
           D PE ++     G EE  +   K   LD  E+L +I +         +G+ +L  VQ+  
Sbjct: 168 DKPELTRYDIITGSEEDKIENYKIDELDIPEELKEIIKS--------RGIEELLPVQTLS 219

Query: 504 YKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563
            K+ L + D++L+ + T +GKT +  L  ++ L            +  K +++ P+ AL 
Sbjct: 220 VKAGLLNGDDLLIISATSSGKTLIGELAGIKNLI----------KTGKKFLFLVPLVALA 269

Query: 564 AEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQ----IIVTTPEKWDIITRKSGDRT 619
            +       R +    KV    G   + ++   ET     IIV T E  D + R    + 
Sbjct: 270 NQKYLEFKERYEKLGFKVSLRVGLGRIGKKVDVETSLDADIIVGTYEGIDYLIRTKRLKD 329

Query: 620 YTQLVKLLIIDEIHLLH-DNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVAL 678
               +  ++IDEIH L+ + RG  L+ ++ R     +  ++    + LSAT+ N +++A 
Sbjct: 330 ----IGTVVIDEIHSLNLEERGARLDGLIGRLRFLFKEAQK----IYLSATIGNPKELAK 381

Query: 679 FLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLC---YEKVVAVAGKHQ 735
            L   L   + Y   + RPVPL +  I    K    +  ++ ++    ++ +     + Q
Sbjct: 382 QLNAKL---VLY---NGRPVPLERHIIF--CKNDFAKLNIIKEIVKREWQNISKFGYRGQ 433

Query: 736 VLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPY 795
            LIF +SRK     A+A++   ++ +                                  
Sbjct: 434 CLIFTYSRKRAEYLAKALKSKGIKAE---------------------------------- 459

Query: 796 GFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGA 855
               +H GM    R+ VED F +  +Q +V+TA L+ GV+ PA TVI++   +     GA
Sbjct: 460 ---FYHGGMEYIKRRKVEDDFANQKIQCVVTTAALSAGVDFPASTVILESLAM-----GA 511

Query: 856 -WTELSPLDIMQMLGRAGRPQYDSYGE 881
            W  L+P +  QM GRAGR      G+
Sbjct: 512 DW--LNPAEFQQMCGRAGRKGMHEIGK 536



 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 112/220 (50%), Gaps = 37/220 (16%)

Query: 1337 QGFKHFNPIQT-QVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVY 1395
            +G +   P+QT  V   L N DD +L+ + T SGKT+  E A ++N  K  +    + ++
Sbjct: 207  RGIEELLPVQTLSVKAGLLNGDD-LLIISATSSGKTLIGELAGIKNLIKTGK----KFLF 261

Query: 1396 IAPLEALAKERYRDWEIKFGQGLGMRVVELTG----------ETAMDLKLLEKGQIIIST 1445
            + PL ALA ++Y +++ ++ + LG +V    G          ET++D        II+ T
Sbjct: 262  LVPLVALANQKYLEFKERY-EKLGFKVSLRVGLGRIGKKVDVETSLD------ADIIVGT 314

Query: 1446 PEKWDALSRRWKQRKYVQQVSLFIIDELHLIG-GQGGPVLEVIVSRMRYIASQVENKIRI 1504
             E  D L R     K ++ +   +IDE+H +   + G  L+ ++ R+R++  + +     
Sbjct: 315  YEGIDYLIR----TKRLKDIGTVVIDEIHSLNLEERGARLDGLIGRLRFLFKEAQK---- 366

Query: 1505 VALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHI 1544
            + LS ++ N K+L + + A    L+N     RPVPLE HI
Sbjct: 367  IYLSATIGNPKELAKQLNA-KLVLYNG----RPVPLERHI 401


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.135    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 631,017,155
Number of Sequences: 539616
Number of extensions: 28733032
Number of successful extensions: 150321
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 1109
Number of HSP's that attempted gapping in prelim test: 127686
Number of HSP's gapped (non-prelim): 12028
length of query: 1665
length of database: 191,569,459
effective HSP length: 131
effective length of query: 1534
effective length of database: 120,879,763
effective search space: 185429556442
effective search space used: 185429556442
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)