Query 000324
Match_columns 1665
No_of_seqs 1008 out of 6043
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 04:23:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000324.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000324hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0951 RNA helicase BRR2, DEA 100.0 2E-258 4E-263 2330.5 83.0 1435 166-1664 1-1436(1674)
2 KOG0952 DNA/RNA helicase MER3/ 100.0 2E-202 4E-207 1826.5 56.4 1193 418-1651 35-1229(1230)
3 PRK02362 ski2-like helicase; P 100.0 2E-90 4.4E-95 912.1 62.1 660 482-1196 8-706 (737)
4 PRK00254 ski2-like helicase; P 100.0 2E-86 4.2E-91 872.2 61.9 658 482-1195 8-700 (720)
5 COG1204 Superfamily II helicas 100.0 8.8E-87 1.9E-91 852.8 34.0 738 482-1257 16-763 (766)
6 PRK01172 ski2-like helicase; P 100.0 4.4E-82 9.6E-87 828.3 62.6 643 482-1195 8-667 (674)
7 KOG0951 RNA helicase BRR2, DEA 100.0 7.2E-63 1.6E-67 607.8 30.8 491 478-1024 1128-1621(1674)
8 smart00611 SEC63 Domain of unk 100.0 6.1E-53 1.3E-57 504.8 32.6 308 994-1302 2-312 (312)
9 COG1202 Superfamily II helicas 100.0 8.8E-51 1.9E-55 469.0 40.1 558 477-1136 194-829 (830)
10 PF02889 Sec63: Sec63 Brl doma 100.0 8.2E-50 1.8E-54 478.7 24.8 305 996-1301 1-314 (314)
11 KOG0330 ATP-dependent RNA heli 100.0 3.8E-46 8.3E-51 415.7 28.7 336 491-903 79-424 (476)
12 KOG0950 DNA polymerase theta/e 100.0 2.2E-44 4.8E-49 442.1 34.0 661 481-1181 206-934 (1008)
13 PRK13767 ATP-dependent helicas 100.0 1.8E-43 3.8E-48 469.7 43.2 414 480-944 16-460 (876)
14 KOG0952 DNA/RNA helicase MER3/ 100.0 1.2E-44 2.6E-49 444.4 26.1 346 1304-1665 76-428 (1230)
15 COG1201 Lhr Lhr-like helicases 100.0 1.2E-42 2.7E-47 438.3 37.0 450 479-1013 5-471 (814)
16 TIGR03817 DECH_helic helicase/ 100.0 1.3E-42 2.7E-47 452.6 37.6 356 481-894 20-391 (742)
17 KOG0947 Cytoplasmic exosomal R 100.0 1.6E-42 3.4E-47 420.1 33.4 401 495-939 297-771 (1248)
18 KOG0331 ATP-dependent RNA heli 100.0 2.3E-42 5.1E-47 413.9 32.4 345 482-893 98-452 (519)
19 PRK10590 ATP-dependent RNA hel 100.0 9.7E-42 2.1E-46 427.5 37.4 345 481-895 7-358 (456)
20 PLN00206 DEAD-box ATP-dependen 100.0 8.6E-42 1.9E-46 432.8 36.9 346 481-896 127-482 (518)
21 PRK11776 ATP-dependent RNA hel 100.0 1.9E-41 4.2E-46 426.9 37.0 336 482-894 11-354 (460)
22 PRK04837 ATP-dependent RNA hel 100.0 1.9E-41 4E-46 422.4 36.2 345 482-895 15-368 (423)
23 PTZ00110 helicase; Provisional 100.0 2.9E-41 6.2E-46 428.9 37.7 344 481-895 136-490 (545)
24 KOG0338 ATP-dependent RNA heli 100.0 3.1E-42 6.6E-47 394.1 25.1 339 492-901 200-545 (691)
25 KOG0948 Nuclear exosomal RNA h 100.0 2.7E-42 5.8E-47 408.6 23.4 404 495-940 129-587 (1041)
26 PRK04537 ATP-dependent RNA hel 100.0 8.8E-41 1.9E-45 425.6 37.3 345 482-893 16-368 (572)
27 PRK11192 ATP-dependent RNA hel 100.0 1.5E-40 3.3E-45 416.2 38.9 343 481-895 7-358 (434)
28 PLN03137 ATP-dependent DNA hel 100.0 3.6E-40 7.7E-45 421.8 41.2 327 491-901 456-799 (1195)
29 KOG0342 ATP-dependent RNA heli 100.0 3.2E-41 7E-46 387.8 28.3 350 482-905 89-451 (543)
30 PRK09751 putative ATP-dependen 100.0 2.4E-40 5.2E-45 442.2 39.6 400 516-941 1-444 (1490)
31 COG0513 SrmB Superfamily II DN 100.0 1.5E-40 3.3E-45 418.2 35.0 340 482-896 36-388 (513)
32 KOG0345 ATP-dependent RNA heli 100.0 4.1E-40 8.8E-45 375.4 33.8 357 482-906 13-382 (567)
33 PRK01297 ATP-dependent RNA hel 100.0 7.3E-40 1.6E-44 413.5 38.2 343 481-891 93-444 (475)
34 KOG0333 U5 snRNP-like RNA heli 100.0 3.2E-40 7E-45 379.5 31.3 342 491-896 263-631 (673)
35 PRK11634 ATP-dependent RNA hel 100.0 1E-39 2.3E-44 417.4 37.6 336 482-895 13-358 (629)
36 KOG0343 RNA Helicase [RNA proc 100.0 1.7E-40 3.6E-45 382.9 26.1 345 491-906 87-440 (758)
37 PTZ00424 helicase 45; Provisio 100.0 1.3E-39 2.8E-44 404.8 36.3 340 482-897 35-382 (401)
38 KOG0348 ATP-dependent RNA heli 100.0 1.2E-39 2.7E-44 374.9 29.9 370 491-900 155-564 (708)
39 KOG0340 ATP-dependent RNA heli 100.0 9.4E-40 2E-44 360.7 25.5 344 478-895 10-367 (442)
40 KOG0326 ATP-dependent RNA heli 100.0 3.6E-40 7.9E-45 357.7 18.5 334 483-893 94-433 (459)
41 COG4581 Superfamily II RNA hel 100.0 4.7E-39 1E-43 409.8 31.1 410 495-940 119-587 (1041)
42 PRK02362 ski2-like helicase; P 100.0 7.1E-39 1.5E-43 423.0 33.7 315 1327-1665 8-335 (737)
43 TIGR00614 recQ_fam ATP-depende 100.0 1.7E-38 3.6E-43 399.4 33.5 332 487-900 4-344 (470)
44 KOG0328 Predicted ATP-dependen 100.0 1.4E-38 3E-43 340.4 24.1 336 484-896 37-380 (400)
45 TIGR01970 DEAH_box_HrpB ATP-de 100.0 8E-37 1.7E-41 396.9 38.8 419 504-1036 10-441 (819)
46 KOG0335 ATP-dependent RNA heli 100.0 9.3E-38 2E-42 367.6 26.4 337 491-890 92-445 (482)
47 COG1204 Superfamily II helicas 100.0 6.8E-38 1.5E-42 402.6 27.6 320 1332-1665 20-346 (766)
48 PRK11057 ATP-dependent DNA hel 100.0 1.6E-36 3.4E-41 390.9 36.6 333 478-901 8-355 (607)
49 PRK11664 ATP-dependent RNA hel 100.0 2.1E-36 4.7E-41 394.2 36.8 410 504-1022 13-431 (812)
50 TIGR01389 recQ ATP-dependent D 100.0 9.2E-37 2E-41 394.7 33.2 331 486-904 5-346 (591)
51 KOG0347 RNA helicase [RNA proc 100.0 2.1E-37 4.6E-42 357.5 23.4 374 491-924 199-615 (731)
52 KOG0332 ATP-dependent RNA heli 100.0 2.4E-36 5.2E-41 335.3 26.2 341 483-890 99-444 (477)
53 PRK00254 ski2-like helicase; P 100.0 3.9E-36 8.4E-41 396.1 33.0 308 1327-1665 8-327 (720)
54 KOG0336 ATP-dependent RNA heli 100.0 2.1E-36 4.6E-41 337.2 23.4 336 491-897 238-580 (629)
55 KOG0350 DEAD-box ATP-dependent 100.0 1E-35 2.3E-40 341.1 24.5 346 491-900 155-551 (620)
56 PRK11131 ATP-dependent RNA hel 100.0 6.3E-35 1.4E-39 383.6 33.5 443 502-1052 80-536 (1294)
57 PRK01172 ski2-like helicase; P 100.0 1.2E-34 2.7E-39 380.5 33.5 308 1327-1665 8-317 (674)
58 KOG0339 ATP-dependent RNA heli 100.0 1.2E-34 2.6E-39 331.1 26.0 335 491-897 241-583 (731)
59 TIGR01967 DEAH_box_HrpA ATP-de 100.0 3.2E-34 6.9E-39 378.7 33.7 441 502-1051 73-526 (1283)
60 KOG0341 DEAD-box protein abstr 100.0 3.7E-35 8.1E-40 325.1 17.0 326 491-890 188-529 (610)
61 TIGR00580 mfd transcription-re 100.0 4.5E-33 9.8E-38 365.3 36.5 310 492-889 449-770 (926)
62 KOG0346 RNA helicase [RNA proc 100.0 1.2E-33 2.5E-38 319.6 26.2 341 482-892 26-413 (569)
63 PRK10917 ATP-dependent DNA hel 100.0 8.3E-33 1.8E-37 359.9 35.2 307 493-888 260-588 (681)
64 KOG0330 ATP-dependent RNA heli 100.0 9.5E-34 2.1E-38 316.8 22.3 281 1326-1665 67-356 (476)
65 KOG0334 RNA helicase [RNA proc 100.0 2.1E-33 4.4E-38 351.1 27.2 363 492-923 384-757 (997)
66 TIGR00643 recG ATP-dependent D 100.0 8.6E-33 1.9E-37 357.8 33.4 312 492-888 233-565 (630)
67 KOG0922 DEAH-box RNA helicase 100.0 1.6E-32 3.5E-37 329.0 31.7 441 506-1052 61-511 (674)
68 COG0514 RecQ Superfamily II DN 100.0 1.3E-32 2.7E-37 336.5 30.1 327 486-903 9-351 (590)
69 KOG4284 DEAD box protein [Tran 100.0 1.8E-33 3.8E-38 328.9 19.7 329 491-890 43-380 (980)
70 KOG0344 ATP-dependent RNA heli 100.0 7.6E-33 1.6E-37 326.8 24.4 339 491-895 154-501 (593)
71 COG1201 Lhr Lhr-like helicases 100.0 2.5E-32 5.4E-37 345.2 29.4 297 1325-1665 6-310 (814)
72 PHA02653 RNA helicase NPH-II; 100.0 1.1E-31 2.5E-36 341.0 34.6 327 498-890 167-515 (675)
73 PRK10689 transcription-repair 100.0 1.3E-31 2.9E-36 358.7 36.8 310 492-889 598-919 (1147)
74 KOG0331 ATP-dependent RNA heli 100.0 1.8E-32 3.9E-37 329.0 25.3 280 1327-1665 98-397 (519)
75 COG1643 HrpA HrpA-like helicas 100.0 1.3E-31 2.9E-36 341.4 34.0 430 502-1037 56-494 (845)
76 KOG0338 ATP-dependent RNA heli 100.0 7.1E-33 1.5E-37 317.6 19.7 283 1326-1665 187-482 (691)
77 PRK10590 ATP-dependent RNA hel 100.0 1.7E-31 3.7E-36 335.1 33.2 286 1326-1665 7-301 (456)
78 TIGR03817 DECH_helic helicase/ 100.0 1.4E-31 3E-36 349.3 31.1 304 1327-1665 21-335 (742)
79 KOG0923 mRNA splicing factor A 100.0 3.5E-31 7.5E-36 311.5 31.1 477 500-1086 270-755 (902)
80 PRK11776 ATP-dependent RNA hel 100.0 3.7E-31 7.9E-36 333.6 33.3 282 1327-1665 11-298 (460)
81 COG0513 SrmB Superfamily II DN 100.0 3.4E-31 7.3E-36 333.7 31.5 284 1327-1665 36-329 (513)
82 PRK13767 ATP-dependent helicas 100.0 2.9E-31 6.4E-36 353.2 32.5 300 1331-1665 21-346 (876)
83 PTZ00110 helicase; Provisional 100.0 5.6E-31 1.2E-35 335.0 32.7 287 1326-1665 136-433 (545)
84 COG1205 Distinct helicase fami 100.0 3.1E-31 6.7E-36 346.2 30.9 352 491-894 66-427 (851)
85 PRK04837 ATP-dependent RNA hel 100.0 1.2E-30 2.6E-35 325.4 34.5 284 1326-1665 14-311 (423)
86 TIGR03158 cas3_cyano CRISPR-as 100.0 6.6E-31 1.4E-35 318.1 30.7 301 499-872 1-357 (357)
87 PLN00206 DEAD-box ATP-dependen 100.0 8.1E-31 1.8E-35 332.7 32.8 287 1326-1665 127-424 (518)
88 PRK04537 ATP-dependent RNA hel 100.0 8E-31 1.7E-35 334.4 32.8 285 1327-1665 16-313 (572)
89 TIGR02621 cas3_GSU0051 CRISPR- 100.0 9.2E-31 2E-35 333.0 33.0 326 485-885 7-388 (844)
90 KOG0924 mRNA splicing factor A 100.0 1.9E-30 4.2E-35 304.9 30.7 456 498-1057 359-823 (1042)
91 KOG0327 Translation initiation 100.0 3.2E-31 7E-36 299.1 20.4 334 484-896 36-377 (397)
92 PRK11192 ATP-dependent RNA hel 100.0 5.1E-30 1.1E-34 321.3 33.3 285 1327-1665 8-301 (434)
93 PRK11634 ATP-dependent RNA hel 100.0 6.9E-30 1.5E-34 327.2 33.6 284 1326-1665 12-301 (629)
94 TIGR01587 cas3_core CRISPR-ass 100.0 2.3E-30 4.9E-35 316.8 27.5 304 514-890 2-337 (358)
95 PRK01297 ATP-dependent RNA hel 100.0 1E-29 2.2E-34 321.3 32.7 285 1326-1665 93-391 (475)
96 PTZ00424 helicase 45; Provisio 100.0 1.1E-29 2.3E-34 316.0 32.3 285 1326-1665 34-323 (401)
97 KOG0337 ATP-dependent RNA heli 100.0 2.7E-31 5.9E-36 299.4 16.1 337 486-897 33-376 (529)
98 COG1111 MPH1 ERCC4-like helica 100.0 3.9E-29 8.4E-34 291.2 32.4 341 491-896 11-490 (542)
99 PRK09751 putative ATP-dependen 100.0 8.6E-30 1.9E-34 341.4 29.5 294 1362-1665 1-333 (1490)
100 KOG0340 ATP-dependent RNA heli 100.0 5E-30 1.1E-34 284.0 21.1 284 1325-1665 12-310 (442)
101 KOG0328 Predicted ATP-dependen 100.0 3.2E-30 7E-35 276.4 18.8 287 1319-1665 26-322 (400)
102 KOG0333 U5 snRNP-like RNA heli 100.0 3.5E-29 7.6E-34 288.9 23.7 315 1290-1665 224-573 (673)
103 PHA02558 uvsW UvsW helicase; P 100.0 1.9E-28 4E-33 310.0 30.4 310 494-885 113-449 (501)
104 COG1202 Superfamily II helicas 100.0 1E-28 2.2E-33 286.9 24.2 282 1331-1665 204-496 (830)
105 KOG0345 ATP-dependent RNA heli 100.0 1.9E-28 4E-33 280.4 25.4 287 1327-1665 13-313 (567)
106 KOG0326 ATP-dependent RNA heli 100.0 7.5E-30 1.6E-34 277.7 13.0 279 1325-1665 90-378 (459)
107 KOG0342 ATP-dependent RNA heli 100.0 1.7E-28 3.6E-33 283.3 21.5 291 1327-1665 89-386 (543)
108 KOG0920 ATP-dependent RNA heli 100.0 1.1E-27 2.4E-32 303.4 28.1 428 500-1024 177-641 (924)
109 KOG0352 ATP-dependent DNA heli 100.0 2.4E-28 5.3E-33 274.6 19.4 330 486-897 11-370 (641)
110 TIGR00614 recQ_fam ATP-depende 100.0 1.8E-27 4E-32 299.6 29.3 271 1332-1665 3-282 (470)
111 KOG0949 Predicted helicase, DE 100.0 1.1E-27 2.3E-32 292.0 24.1 366 495-888 511-1047(1330)
112 KOG0354 DEAD-box like helicase 100.0 2.6E-27 5.6E-32 292.1 27.9 341 491-891 58-531 (746)
113 KOG0926 DEAH-box RNA helicase 100.0 2.1E-27 4.5E-32 284.0 24.7 454 504-1023 264-798 (1172)
114 KOG0343 RNA Helicase [RNA proc 100.0 1E-27 2.2E-32 277.6 21.4 285 1329-1665 78-371 (758)
115 KOG0339 ATP-dependent RNA heli 100.0 9.8E-28 2.1E-32 274.9 20.9 285 1326-1665 229-524 (731)
116 KOG0346 RNA helicase [RNA proc 100.0 1.2E-27 2.6E-32 271.1 20.5 289 1326-1665 25-324 (569)
117 PLN03137 ATP-dependent DNA hel 100.0 3.6E-27 7.8E-32 303.1 26.8 282 1321-1665 441-736 (1195)
118 PRK14701 reverse gyrase; Provi 100.0 5.2E-27 1.1E-31 320.8 29.2 328 491-900 76-467 (1638)
119 KOG0351 ATP-dependent DNA heli 100.0 3.1E-27 6.8E-32 305.3 24.6 328 491-901 260-604 (941)
120 PRK05580 primosome assembly pr 99.9 2.4E-26 5.2E-31 298.1 31.3 369 495-895 144-555 (679)
121 KOG0335 ATP-dependent RNA heli 99.9 4.1E-27 8.8E-32 278.0 21.6 307 1296-1665 59-393 (482)
122 PRK09401 reverse gyrase; Revie 99.9 2.1E-26 4.5E-31 309.6 29.4 304 492-873 78-430 (1176)
123 PRK13766 Hef nuclease; Provisi 99.9 2.6E-25 5.6E-30 298.2 38.6 336 493-891 13-481 (773)
124 PRK12898 secA preprotein trans 99.9 2.8E-25 6.1E-30 277.8 33.5 319 495-890 103-587 (656)
125 KOG0947 Cytoplasmic exosomal R 99.9 2E-26 4.4E-31 280.9 22.1 293 1341-1665 297-662 (1248)
126 KOG0332 ATP-dependent RNA heli 99.9 1.5E-26 3.2E-31 257.8 19.0 298 1312-1665 82-386 (477)
127 TIGR01389 recQ ATP-dependent D 99.9 1.2E-25 2.5E-30 291.5 30.6 268 1331-1665 4-280 (591)
128 TIGR00603 rad25 DNA repair hel 99.9 1.8E-25 3.9E-30 282.6 30.7 319 494-894 254-612 (732)
129 KOG0353 ATP-dependent DNA heli 99.9 4.7E-26 1E-30 251.7 21.6 330 484-895 84-473 (695)
130 PRK09200 preprotein translocas 99.9 4.1E-25 8.8E-30 282.1 32.9 324 492-890 76-542 (790)
131 KOG0925 mRNA splicing factor A 99.9 1.8E-25 3.9E-30 255.5 26.1 440 499-1047 50-503 (699)
132 KOG0329 ATP-dependent RNA heli 99.9 7E-27 1.5E-31 247.2 13.3 328 445-895 24-361 (387)
133 TIGR03714 secA2 accessory Sec 99.9 7.8E-25 1.7E-29 276.5 33.9 347 496-915 69-579 (762)
134 KOG0348 ATP-dependent RNA heli 99.9 7.3E-26 1.6E-30 261.9 22.4 312 1338-1665 156-503 (708)
135 KOG0336 ATP-dependent RNA heli 99.9 2.6E-26 5.7E-31 256.8 18.0 284 1329-1665 229-521 (629)
136 COG4581 Superfamily II RNA hel 99.9 1E-25 2.2E-30 288.5 25.3 298 1340-1665 118-476 (1041)
137 PRK11057 ATP-dependent DNA hel 99.9 3.6E-25 7.9E-30 285.7 30.0 272 1325-1665 10-292 (607)
138 KOG0347 RNA helicase [RNA proc 99.9 1.2E-26 2.6E-31 269.0 14.1 297 1326-1665 187-519 (731)
139 KOG0350 DEAD-box ATP-dependent 99.9 1.4E-25 3.1E-30 258.2 21.5 285 1338-1665 156-489 (620)
140 TIGR00595 priA primosomal prot 99.9 3.4E-25 7.3E-30 277.7 25.9 343 515-893 1-385 (505)
141 KOG0337 ATP-dependent RNA heli 99.9 5.6E-26 1.2E-30 256.7 14.2 286 1322-1664 23-316 (529)
142 KOG0948 Nuclear exosomal RNA h 99.9 3.1E-25 6.7E-30 264.5 19.5 297 1341-1665 129-478 (1041)
143 KOG0341 DEAD-box protein abstr 99.9 8.6E-26 1.9E-30 251.1 13.8 282 1328-1665 178-477 (610)
144 TIGR01054 rgy reverse gyrase. 99.9 3.2E-24 7E-29 289.1 31.8 284 493-853 76-409 (1171)
145 TIGR00963 secA preprotein tran 99.9 7.7E-24 1.7E-28 265.7 31.8 323 495-890 56-518 (745)
146 KOG0334 RNA helicase [RNA proc 99.9 3.2E-25 6.8E-30 278.2 19.3 290 1324-1665 369-669 (997)
147 KOG0327 Translation initiation 99.9 2.4E-25 5.1E-30 251.8 15.7 281 1325-1664 31-318 (397)
148 PRK09694 helicase Cas3; Provis 99.9 1.5E-23 3.4E-28 272.7 34.2 314 493-876 284-664 (878)
149 COG1205 Distinct helicase fami 99.9 4.5E-24 9.8E-29 279.2 29.3 301 1332-1664 60-369 (851)
150 TIGR00580 mfd transcription-re 99.9 8.2E-24 1.8E-28 278.4 31.4 256 1339-1665 450-718 (926)
151 COG1200 RecG RecG-like helicas 99.9 2.1E-23 4.6E-28 254.1 28.6 316 495-890 262-592 (677)
152 KOG0344 ATP-dependent RNA heli 99.9 2.9E-24 6.3E-29 254.5 18.1 286 1328-1665 144-444 (593)
153 TIGR02621 cas3_GSU0051 CRISPR- 99.9 3.1E-23 6.7E-28 264.6 28.7 270 1338-1665 13-342 (844)
154 KOG4284 DEAD box protein [Tran 99.9 1.9E-24 4.1E-29 253.8 15.7 293 1325-1665 30-328 (980)
155 PRK10689 transcription-repair 99.9 5.9E-23 1.3E-27 275.9 31.6 256 1339-1665 599-867 (1147)
156 PRK10917 ATP-dependent DNA hel 99.9 6.3E-23 1.4E-27 267.6 29.2 263 1341-1665 261-537 (681)
157 TIGR00643 recG ATP-dependent D 99.9 1.3E-22 2.8E-27 263.2 30.5 268 1338-1665 233-514 (630)
158 COG0514 RecQ Superfamily II DN 99.9 8.2E-23 1.8E-27 250.7 24.2 268 1330-1665 7-286 (590)
159 TIGR03158 cas3_cyano CRISPR-as 99.9 3.6E-22 7.8E-27 242.1 26.9 268 1345-1665 1-324 (357)
160 KOG0950 DNA polymerase theta/e 99.9 4.5E-23 9.8E-28 255.2 17.8 311 1338-1665 220-554 (1008)
161 COG4098 comFA Superfamily II D 99.9 1.5E-21 3.4E-26 216.2 26.9 311 494-887 96-414 (441)
162 COG1061 SSL2 DNA or RNA helica 99.9 7.5E-22 1.6E-26 244.9 25.2 297 493-874 34-376 (442)
163 KOG0349 Putative DEAD-box RNA 99.9 1.5E-22 3.2E-27 227.9 15.6 320 549-920 285-663 (725)
164 PRK09401 reverse gyrase; Revie 99.9 1.1E-21 2.3E-26 264.4 26.7 265 1331-1665 68-382 (1176)
165 KOG4434 Molecular chaperone SE 99.9 1.2E-21 2.5E-26 216.0 18.9 279 1022-1302 9-478 (520)
166 TIGR01587 cas3_core CRISPR-ass 99.9 2.9E-21 6.3E-26 236.5 23.6 254 1360-1665 2-284 (358)
167 PRK14701 reverse gyrase; Provi 99.9 4.9E-21 1.1E-25 262.7 26.8 264 1338-1665 77-384 (1638)
168 PHA02558 uvsW UvsW helicase; P 99.9 8.6E-21 1.9E-25 240.4 25.7 264 1339-1665 112-400 (501)
169 TIGR01054 rgy reverse gyrase. 99.9 1.2E-20 2.6E-25 254.8 26.6 270 1331-1665 66-381 (1171)
170 COG1197 Mfd Transcription-repa 99.9 6.1E-20 1.3E-24 235.5 31.4 307 495-890 594-914 (1139)
171 TIGR01970 DEAH_box_HrpB ATP-de 99.9 5.1E-20 1.1E-24 240.5 28.1 250 1356-1665 16-268 (819)
172 PRK11664 ATP-dependent RNA hel 99.9 4.1E-20 8.9E-25 242.1 26.7 249 1357-1665 20-271 (812)
173 cd00268 DEADc DEAD-box helicas 99.8 2.7E-20 5.8E-25 209.1 20.4 177 1327-1513 6-186 (203)
174 PRK04914 ATP-dependent helicas 99.8 7.8E-19 1.7E-23 230.3 36.2 319 495-885 152-599 (956)
175 PRK13104 secA preprotein trans 99.8 2.2E-19 4.8E-24 228.5 29.8 127 495-635 82-214 (896)
176 cd00268 DEADc DEAD-box helicas 99.8 6.5E-20 1.4E-24 206.0 21.3 182 483-682 7-194 (203)
177 PRK11448 hsdR type I restricti 99.8 3.4E-19 7.3E-24 239.0 31.6 336 494-886 412-813 (1123)
178 KOG0329 ATP-dependent RNA heli 99.8 2.1E-20 4.5E-25 198.4 15.1 185 1327-1522 49-239 (387)
179 PRK12906 secA preprotein trans 99.8 6.9E-19 1.5E-23 223.4 30.6 352 495-916 80-593 (796)
180 COG1198 PriA Primosomal protei 99.8 2.1E-19 4.6E-24 227.2 25.3 401 493-955 196-640 (730)
181 COG1111 MPH1 ERCC4-like helica 99.8 5.4E-19 1.2E-23 207.0 24.8 174 1337-1525 11-190 (542)
182 KOG0351 ATP-dependent DNA heli 99.8 8.7E-20 1.9E-24 236.7 19.3 267 1338-1665 261-541 (941)
183 PHA02653 RNA helicase NPH-II; 99.8 8.1E-19 1.8E-23 224.1 27.7 267 1344-1665 167-452 (675)
184 KOG0353 ATP-dependent DNA heli 99.8 9.9E-20 2.2E-24 202.0 16.4 285 1318-1665 72-373 (695)
185 PF00270 DEAD: DEAD/DEAH box h 99.8 1.1E-19 2.4E-24 197.6 16.4 158 497-671 1-163 (169)
186 PF00270 DEAD: DEAD/DEAH box h 99.8 3.2E-19 6.9E-24 194.1 17.0 158 1343-1512 1-163 (169)
187 KOG0352 ATP-dependent DNA heli 99.8 2.9E-19 6.2E-24 202.0 16.8 269 1331-1665 10-311 (641)
188 COG1203 CRISPR-associated heli 99.8 9.2E-19 2E-23 229.9 24.3 328 496-890 196-551 (733)
189 PRK13766 Hef nuclease; Provisi 99.8 9.1E-18 2E-22 225.5 32.5 160 1339-1513 13-174 (773)
190 PRK12904 preprotein translocas 99.8 1.3E-17 2.8E-22 212.8 30.3 126 495-635 81-213 (830)
191 PRK05580 primosome assembly pr 99.8 5.7E-18 1.2E-22 220.3 24.9 301 1340-1665 143-486 (679)
192 PRK12899 secA preprotein trans 99.8 7.6E-17 1.7E-21 204.8 34.1 132 492-635 86-227 (970)
193 PRK13107 preprotein translocas 99.8 4.9E-17 1.1E-21 206.5 27.9 128 495-636 82-215 (908)
194 TIGR00603 rad25 DNA repair hel 99.8 2.6E-17 5.6E-22 209.1 24.9 260 1340-1665 254-548 (732)
195 KOG0354 DEAD-box like helicase 99.8 1.8E-17 4E-22 205.6 22.5 166 1334-1513 55-223 (746)
196 PRK09694 helicase Cas3; Provis 99.8 7.9E-17 1.7E-21 210.5 28.2 279 1339-1665 284-627 (878)
197 COG1200 RecG RecG-like helicas 99.7 2.5E-16 5.3E-21 192.9 25.2 262 1341-1665 262-539 (677)
198 TIGR01407 dinG_rel DnaQ family 99.7 2.7E-15 5.8E-20 201.6 36.7 203 661-903 596-829 (850)
199 COG1061 SSL2 DNA or RNA helica 99.7 7.6E-16 1.6E-20 191.5 25.3 261 1339-1664 34-337 (442)
200 TIGR00595 priA primosomal prot 99.7 2.7E-16 5.9E-21 197.7 19.8 277 1361-1665 1-318 (505)
201 PRK12898 secA preprotein trans 99.7 2E-15 4.3E-20 189.9 25.1 129 1340-1477 102-255 (656)
202 TIGR03714 secA2 accessory Sec 99.7 2.8E-15 6.1E-20 190.5 25.7 132 1339-1477 66-208 (762)
203 PRK09200 preprotein translocas 99.7 2.5E-15 5.4E-20 193.0 23.2 128 1341-1477 78-212 (790)
204 KOG0949 Predicted helicase, DE 99.7 2.8E-15 6.1E-20 184.7 20.5 169 1341-1522 511-682 (1330)
205 PRK11131 ATP-dependent RNA hel 99.7 1E-14 2.2E-19 194.0 27.2 251 1355-1665 87-343 (1294)
206 KOG0349 Putative DEAD-box RNA 99.7 4.4E-16 9.5E-21 176.2 12.0 234 1391-1665 287-564 (725)
207 TIGR00348 hsdR type I site-spe 99.6 1.7E-14 3.8E-19 187.9 28.2 343 496-887 239-647 (667)
208 TIGR00963 secA preprotein tran 99.6 1.1E-14 2.4E-19 183.9 25.1 129 1340-1477 55-189 (745)
209 COG4098 comFA Superfamily II D 99.6 3.3E-14 7.1E-19 158.6 24.7 258 1340-1664 96-360 (441)
210 KOG0953 Mitochondrial RNA heli 99.6 3.6E-15 7.8E-20 175.1 17.5 291 512-900 192-487 (700)
211 PLN03142 Probable chromatin-re 99.6 6.7E-14 1.5E-18 184.7 29.6 325 495-891 169-601 (1033)
212 COG1197 Mfd Transcription-repa 99.6 4.9E-14 1.1E-18 181.9 27.5 259 1338-1665 590-861 (1139)
213 PRK07246 bifunctional ATP-depe 99.6 4.5E-13 9.8E-18 177.4 34.0 84 490-586 241-328 (820)
214 TIGR00631 uvrb excinuclease AB 99.6 3.6E-13 7.8E-18 173.4 31.3 114 732-891 441-555 (655)
215 COG4096 HsdR Type I site-speci 99.6 1.1E-13 2.4E-18 171.4 24.6 312 493-875 163-526 (875)
216 KOG4150 Predicted ATP-dependen 99.6 4E-14 8.6E-19 165.0 19.1 355 484-895 273-647 (1034)
217 TIGR01967 DEAH_box_HrpA ATP-de 99.6 1.3E-13 2.8E-18 184.5 26.6 257 1350-1665 75-336 (1283)
218 PRK11448 hsdR type I restricti 99.6 1E-13 2.2E-18 186.7 24.3 175 1340-1522 412-603 (1123)
219 PRK08074 bifunctional ATP-depe 99.6 1.8E-12 3.9E-17 175.0 36.0 204 662-903 674-908 (928)
220 smart00487 DEXDc DEAD-like hel 99.6 9.5E-14 2.1E-18 154.4 19.7 174 1338-1523 5-182 (201)
221 smart00487 DEXDc DEAD-like hel 99.6 9.9E-14 2.1E-18 154.2 19.1 166 492-675 5-175 (201)
222 PRK13104 secA preprotein trans 99.5 2.9E-13 6.3E-18 173.3 24.5 129 1342-1477 81-215 (896)
223 PRK05298 excinuclease ABC subu 99.5 8.4E-13 1.8E-17 171.5 29.3 113 732-889 445-557 (652)
224 PRK12900 secA preprotein trans 99.5 8.2E-13 1.8E-17 168.9 26.8 109 731-890 596-712 (1025)
225 COG1110 Reverse gyrase [DNA re 99.5 1.2E-12 2.5E-17 164.3 25.3 281 492-853 80-417 (1187)
226 PRK12899 secA preprotein trans 99.5 7.3E-14 1.6E-18 178.0 15.1 143 1326-1477 68-228 (970)
227 PRK12326 preprotein translocas 99.5 5.3E-12 1.1E-16 157.6 29.4 127 495-635 78-210 (764)
228 PRK12904 preprotein translocas 99.5 2.7E-12 5.9E-17 164.6 22.9 128 1341-1477 81-214 (830)
229 COG0556 UvrB Helicase subunit 99.5 1.1E-11 2.3E-16 146.2 25.2 170 660-888 386-556 (663)
230 KOG1123 RNA polymerase II tran 99.4 2.3E-13 4.9E-18 157.4 10.9 365 443-895 257-659 (776)
231 PRK14873 primosome assembly pr 99.4 1.6E-12 3.4E-17 166.9 19.5 330 518-889 167-539 (665)
232 PRK13103 secA preprotein trans 99.4 2.4E-11 5.3E-16 155.4 28.2 127 495-635 82-214 (913)
233 cd00046 DEXDc DEAD-like helica 99.4 4.5E-12 9.9E-17 132.4 15.5 141 512-670 1-144 (144)
234 KOG0921 Dosage compensation co 99.4 2.6E-12 5.6E-17 157.5 13.3 421 504-1017 386-863 (1282)
235 PF04851 ResIII: Type III rest 99.4 2.4E-12 5.3E-17 141.8 11.7 151 1341-1512 3-183 (184)
236 cd00046 DEXDc DEAD-like helica 99.4 1.1E-11 2.5E-16 129.3 15.8 140 1359-1511 2-144 (144)
237 PRK13107 preprotein translocas 99.4 2.2E-11 4.8E-16 155.7 20.5 112 1360-1477 98-215 (908)
238 PRK04914 ATP-dependent helicas 99.3 8.3E-11 1.8E-15 155.5 25.8 160 1340-1513 151-317 (956)
239 TIGR03117 cas_csf4 CRISPR-asso 99.3 4.5E-10 9.8E-15 142.5 31.1 72 506-586 11-85 (636)
240 cd00079 HELICc Helicase superf 99.3 6.7E-12 1.5E-16 130.1 12.3 105 732-885 27-131 (131)
241 PF00271 Helicase_C: Helicase 99.3 3E-12 6.6E-17 120.1 8.3 73 793-875 6-78 (78)
242 COG1203 CRISPR-associated heli 99.3 3.5E-11 7.6E-16 158.8 21.3 278 1340-1665 193-500 (733)
243 COG1110 Reverse gyrase [DNA re 99.3 8.5E-11 1.9E-15 147.9 23.2 265 1330-1664 69-388 (1187)
244 PF04851 ResIII: Type III rest 99.3 7.3E-12 1.6E-16 138.0 12.4 151 495-671 3-183 (184)
245 COG1643 HrpA HrpA-like helicas 99.3 9.2E-11 2E-15 151.7 24.0 252 1357-1664 65-318 (845)
246 COG1198 PriA Primosomal protei 99.3 3.3E-11 7.2E-16 153.6 19.5 299 1339-1664 196-539 (730)
247 TIGR02562 cas3_yersinia CRISPR 99.3 3.4E-10 7.4E-15 145.9 28.6 161 497-672 410-636 (1110)
248 PRK11747 dinG ATP-dependent DN 99.3 1.2E-09 2.5E-14 143.5 34.1 198 662-903 458-689 (697)
249 TIGR01407 dinG_rel DnaQ family 99.3 3.8E-10 8.3E-15 152.2 28.2 89 1333-1428 237-332 (850)
250 COG1199 DinG Rad3-related DNA 99.3 1.8E-10 3.9E-15 152.4 24.8 199 662-903 405-632 (654)
251 TIGR00348 hsdR type I site-spe 99.3 7.5E-11 1.6E-15 154.1 19.5 154 1341-1513 238-404 (667)
252 KOG0385 Chromatin remodeling c 99.2 7.2E-10 1.6E-14 135.4 24.0 328 494-892 166-602 (971)
253 PRK12903 secA preprotein trans 99.2 1.7E-09 3.6E-14 137.2 27.7 127 495-635 78-210 (925)
254 COG4096 HsdR Type I site-speci 99.2 1.5E-10 3.3E-15 144.1 15.9 153 1340-1514 164-323 (875)
255 CHL00122 secA preprotein trans 99.2 4.2E-09 9.1E-14 134.7 28.1 127 495-635 76-208 (870)
256 COG4889 Predicted helicase [Ge 99.2 2.6E-10 5.7E-15 139.5 16.1 341 492-886 158-583 (1518)
257 PRK12902 secA preprotein trans 99.2 5.9E-09 1.3E-13 132.9 28.7 127 495-635 85-217 (939)
258 TIGR00604 rad3 DNA repair heli 99.1 1.3E-08 2.8E-13 134.9 31.1 73 492-572 7-82 (705)
259 KOG0922 DEAH-box RNA helicase 99.1 5.4E-09 1.2E-13 127.9 23.3 253 1356-1664 65-321 (674)
260 PRK12906 secA preprotein trans 99.1 2.6E-09 5.7E-14 137.0 20.4 128 1341-1477 80-213 (796)
261 KOG0390 DNA repair protein, SN 99.0 6.4E-08 1.4E-12 123.1 29.1 367 494-889 237-707 (776)
262 smart00490 HELICc helicase sup 99.0 5.4E-10 1.2E-14 105.4 7.6 72 794-875 11-82 (82)
263 PRK07246 bifunctional ATP-depe 99.0 2.9E-08 6.3E-13 132.2 26.4 81 1341-1428 245-329 (820)
264 KOG1000 Chromatin remodeling p 99.0 1.7E-07 3.7E-12 109.9 27.5 154 493-671 196-349 (689)
265 KOG0920 ATP-dependent RNA heli 99.0 2E-08 4.3E-13 129.7 21.2 273 1343-1664 175-475 (924)
266 PF02399 Herpes_ori_bp: Origin 99.0 1.3E-07 2.9E-12 119.7 28.0 303 511-889 49-388 (824)
267 KOG1123 RNA polymerase II tran 99.0 1E-09 2.2E-14 127.8 8.4 262 1339-1663 300-593 (776)
268 COG5407 SEC63 Preprotein trans 98.9 6.4E-09 1.4E-13 119.7 12.5 168 1008-1202 227-398 (610)
269 PLN03142 Probable chromatin-re 98.9 9.7E-08 2.1E-12 127.3 25.3 152 1341-1512 169-330 (1033)
270 KOG0923 mRNA splicing factor A 98.8 1.5E-07 3.3E-12 113.7 18.2 265 1345-1665 269-538 (902)
271 KOG0384 Chromodomain-helicase 98.8 1.1E-07 2.4E-12 122.2 17.0 323 494-891 369-813 (1373)
272 KOG4150 Predicted ATP-dependen 98.7 4.4E-08 9.6E-13 115.5 11.9 304 1330-1664 273-588 (1034)
273 KOG0924 mRNA splicing factor A 98.7 2.9E-07 6.4E-12 111.2 18.8 265 1345-1665 360-629 (1042)
274 PF07652 Flavi_DEAD: Flaviviru 98.7 1E-07 2.2E-12 97.2 12.0 135 511-672 4-138 (148)
275 TIGR03117 cas_csf4 CRISPR-asso 98.7 1.2E-07 2.7E-12 120.7 14.2 69 1355-1427 14-85 (636)
276 PRK12901 secA preprotein trans 98.7 2.3E-06 4.9E-11 110.9 25.1 111 514-635 185-302 (1112)
277 KOG0387 Transcription-coupled 98.6 4.7E-06 1E-10 103.5 25.6 362 493-891 203-660 (923)
278 KOG0926 DEAH-box RNA helicase 98.6 7.1E-07 1.5E-11 109.8 16.8 223 1356-1599 270-506 (1172)
279 PRK14873 primosome assembly pr 98.6 7.6E-07 1.7E-11 115.1 17.4 198 1364-1587 167-381 (665)
280 TIGR00631 uvrb excinuclease AB 98.6 4E-06 8.6E-11 109.0 23.9 69 1562-1665 430-498 (655)
281 PF00176 SNF2_N: SNF2 family N 98.6 2.6E-07 5.7E-12 110.3 12.2 167 499-681 1-185 (299)
282 KOG0392 SNF2 family DNA-depend 98.5 1.5E-06 3.3E-11 111.5 18.1 157 495-669 975-1137(1549)
283 PF07652 Flavi_DEAD: Flaviviru 98.5 5.8E-07 1.3E-11 91.8 11.5 135 1358-1514 5-139 (148)
284 PF00176 SNF2_N: SNF2 family N 98.5 6.9E-07 1.5E-11 106.7 13.6 164 1345-1519 1-182 (299)
285 PRK12326 preprotein translocas 98.5 7.4E-06 1.6E-10 103.6 22.7 128 1341-1477 78-211 (764)
286 smart00489 DEXDc3 DEAD-like he 98.5 1E-06 2.3E-11 104.0 13.6 75 493-573 7-84 (289)
287 smart00488 DEXDc2 DEAD-like he 98.5 1E-06 2.3E-11 104.0 13.6 75 493-573 7-84 (289)
288 smart00488 DEXDc2 DEAD-like he 98.5 1.5E-06 3.3E-11 102.5 14.0 71 1342-1412 9-83 (289)
289 smart00489 DEXDc3 DEAD-like he 98.5 1.5E-06 3.3E-11 102.5 14.0 71 1342-1412 9-83 (289)
290 KOG0389 SNF2 family DNA-depend 98.4 1.2E-05 2.5E-10 100.0 21.5 379 495-910 399-910 (941)
291 COG0556 UvrB Helicase subunit 98.4 1.8E-05 3.9E-10 94.7 21.8 153 1464-1664 331-501 (663)
292 PRK05298 excinuclease ABC subu 98.4 2.3E-05 5E-10 102.8 24.0 69 1562-1665 434-502 (652)
293 TIGR02562 cas3_yersinia CRISPR 98.3 1.6E-05 3.5E-10 103.8 19.8 163 1342-1514 409-637 (1110)
294 PF06862 DUF1253: Protein of u 98.3 0.00022 4.7E-09 87.2 27.6 302 548-895 35-421 (442)
295 PRK13103 secA preprotein trans 98.2 2.6E-06 5.7E-11 110.2 9.3 129 1342-1477 81-215 (913)
296 COG0610 Type I site-specific r 98.2 0.00018 3.9E-09 97.6 26.3 138 512-670 274-413 (962)
297 KOG2340 Uncharacterized conser 98.2 5.1E-05 1.1E-09 90.5 17.2 347 494-890 215-669 (698)
298 PRK08074 bifunctional ATP-depe 98.2 1.5E-05 3.3E-10 108.5 15.0 66 1340-1409 256-324 (928)
299 KOG4439 RNA polymerase II tran 98.1 7E-05 1.5E-09 92.1 18.7 179 495-684 325-520 (901)
300 KOG0953 Mitochondrial RNA heli 98.1 1.6E-05 3.5E-10 95.4 12.4 218 1360-1665 194-415 (700)
301 COG4889 Predicted helicase [Ge 98.0 2.4E-05 5.2E-10 97.3 11.6 128 1339-1477 159-317 (1518)
302 PF07517 SecA_DEAD: SecA DEAD- 98.0 4.1E-05 8.9E-10 88.1 12.9 128 495-636 77-210 (266)
303 KOG0390 DNA repair protein, SN 97.9 0.00049 1.1E-08 88.6 21.6 156 1339-1512 236-415 (776)
304 COG0653 SecA Preprotein transl 97.9 0.0003 6.5E-09 90.8 19.4 112 513-635 95-212 (822)
305 KOG0925 mRNA splicing factor A 97.9 0.00039 8.4E-09 82.3 17.6 220 1342-1595 47-274 (699)
306 PF02399 Herpes_ori_bp: Origin 97.9 0.00067 1.5E-08 87.1 21.1 148 1357-1521 49-201 (824)
307 PF07517 SecA_DEAD: SecA DEAD- 97.9 7.1E-05 1.5E-09 86.2 11.4 129 1340-1477 76-210 (266)
308 PF13086 AAA_11: AAA domain; P 97.8 9.3E-05 2E-09 84.8 10.8 75 495-572 1-75 (236)
309 PRK15483 type III restriction- 97.8 0.00018 3.9E-09 94.7 14.0 53 820-882 501-553 (986)
310 KOG1802 RNA helicase nonsense 97.8 0.0001 2.2E-09 90.1 10.5 81 491-586 406-486 (935)
311 PRK15483 type III restriction- 97.8 0.00017 3.7E-09 95.0 13.3 143 1358-1513 60-240 (986)
312 PF13086 AAA_11: AAA domain; P 97.7 0.0001 2.2E-09 84.4 10.0 70 1341-1412 1-75 (236)
313 PF02562 PhoH: PhoH-like prote 97.7 3.7E-05 8.1E-10 85.0 5.2 147 493-669 2-155 (205)
314 PRK12902 secA preprotein trans 97.7 0.00012 2.7E-09 94.5 10.5 129 1342-1477 84-218 (939)
315 KOG0385 Chromatin remodeling c 97.7 0.00038 8.3E-09 86.7 13.9 155 1340-1513 166-330 (971)
316 PF13604 AAA_30: AAA domain; P 97.6 0.00031 6.7E-09 78.3 11.2 64 495-569 1-65 (196)
317 CHL00122 secA preprotein trans 97.6 0.0001 2.2E-09 95.4 7.9 128 1343-1477 76-209 (870)
318 KOG1000 Chromatin remodeling p 97.6 0.00068 1.5E-08 80.6 13.8 155 1339-1513 196-350 (689)
319 PRK12900 secA preprotein trans 97.6 0.0012 2.5E-08 86.7 17.2 112 1360-1477 154-271 (1025)
320 PF02562 PhoH: PhoH-like prote 97.6 9.8E-05 2.1E-09 81.7 6.4 147 1340-1510 3-155 (205)
321 PRK12903 secA preprotein trans 97.6 0.0023 5E-08 82.8 19.3 128 1341-1477 78-211 (925)
322 KOG0387 Transcription-coupled 97.6 0.0019 4.1E-08 81.2 17.5 155 1339-1513 203-378 (923)
323 KOG0386 Chromatin remodeling c 97.5 0.0011 2.5E-08 85.0 15.7 127 494-637 393-529 (1157)
324 TIGR00376 DNA helicase, putati 97.5 0.00067 1.5E-08 88.6 13.3 68 494-572 156-223 (637)
325 PF06862 DUF1253: Protein of u 97.4 0.008 1.7E-07 73.8 20.7 192 1437-1664 130-355 (442)
326 KOG1002 Nucleotide excision re 97.4 0.0011 2.4E-08 78.6 12.0 167 495-684 184-373 (791)
327 KOG0388 SNF2 family DNA-depend 97.4 0.0069 1.5E-07 74.8 18.6 137 495-648 567-720 (1185)
328 KOG1802 RNA helicase nonsense 97.4 0.00064 1.4E-08 83.3 9.8 80 1338-1427 407-486 (935)
329 PF13604 AAA_30: AAA domain; P 97.4 0.0011 2.4E-08 73.9 11.2 64 1341-1409 1-65 (196)
330 PF12340 DUF3638: Protein of u 97.3 0.0013 2.8E-08 73.4 11.2 134 1340-1478 22-186 (229)
331 PRK10536 hypothetical protein; 97.3 0.00045 9.8E-09 78.5 7.5 60 492-561 56-115 (262)
332 COG0610 Type I site-specific r 97.3 0.0013 2.8E-08 89.6 12.6 140 1358-1514 274-416 (962)
333 PF13245 AAA_19: Part of AAA d 97.3 0.00096 2.1E-08 62.0 7.8 61 503-570 2-62 (76)
334 KOG1803 DNA helicase [Replicat 97.2 0.00063 1.4E-08 83.6 8.0 67 494-571 184-250 (649)
335 KOG1002 Nucleotide excision re 97.2 0.0022 4.8E-08 76.1 11.0 168 1340-1525 183-373 (791)
336 TIGR00376 DNA helicase, putati 97.1 0.0026 5.7E-08 83.2 12.5 68 1340-1412 156-223 (637)
337 TIGR00604 rad3 DNA repair heli 97.0 0.002 4.3E-08 86.1 10.2 72 1339-1412 8-82 (705)
338 PRK10536 hypothetical protein; 97.0 0.012 2.7E-07 67.1 14.3 144 1338-1509 56-211 (262)
339 PF13245 AAA_19: Part of AAA d 96.9 0.0034 7.4E-08 58.3 8.0 60 1349-1410 2-62 (76)
340 KOG4439 RNA polymerase II tran 96.9 0.003 6.6E-08 78.3 9.7 175 1341-1527 325-522 (901)
341 KOG2340 Uncharacterized conser 96.9 0.0078 1.7E-07 72.6 12.3 152 1339-1494 214-442 (698)
342 cd00079 HELICc Helicase superf 96.8 0.0043 9.3E-08 63.9 9.0 66 1565-1665 19-84 (131)
343 PF12340 DUF3638: Protein of u 96.8 0.0067 1.5E-07 67.9 10.4 145 481-636 9-185 (229)
344 PF13307 Helicase_C_2: Helicas 96.8 0.0026 5.6E-08 69.1 7.1 128 733-898 9-160 (167)
345 PRK11747 dinG ATP-dependent DN 96.8 0.0047 1E-07 81.9 10.6 83 1341-1427 25-117 (697)
346 PF13872 AAA_34: P-loop contai 96.8 0.02 4.3E-07 66.5 14.2 162 1341-1513 37-222 (303)
347 KOG0391 SNF2 family DNA-depend 96.8 0.0044 9.5E-08 80.1 9.5 138 1340-1488 614-761 (1958)
348 TIGR01447 recD exodeoxyribonuc 96.7 0.017 3.7E-07 74.7 14.9 154 1331-1509 136-294 (586)
349 PRK10875 recD exonuclease V su 96.7 0.016 3.4E-07 75.2 14.4 85 484-576 141-225 (615)
350 KOG0389 SNF2 family DNA-depend 96.7 0.028 6.1E-07 71.1 15.8 234 1342-1598 400-663 (941)
351 PF13401 AAA_22: AAA domain; P 96.7 0.0093 2E-07 61.7 10.1 119 1357-1509 4-124 (131)
352 PF00580 UvrD-helicase: UvrD/R 96.6 0.0041 8.9E-08 74.8 8.0 123 496-633 1-125 (315)
353 TIGR01447 recD exodeoxyribonuc 96.6 0.021 4.6E-07 73.9 14.7 142 498-667 148-293 (586)
354 PF13872 AAA_34: P-loop contai 96.6 0.018 4E-07 66.7 12.5 162 494-671 36-221 (303)
355 PRK13889 conjugal transfer rel 96.6 0.017 3.7E-07 78.1 13.8 61 495-566 346-406 (988)
356 TIGR02768 TraA_Ti Ti-type conj 96.5 0.02 4.3E-07 76.6 14.1 63 494-567 351-413 (744)
357 PF09848 DUF2075: Uncharacteri 96.5 0.0068 1.5E-07 74.3 8.4 95 1359-1478 3-97 (352)
358 PF09848 DUF2075: Uncharacteri 96.4 0.0069 1.5E-07 74.2 8.4 95 513-637 3-97 (352)
359 COG1199 DinG Rad3-related DNA 96.4 0.0092 2E-07 79.6 10.2 69 1339-1411 13-84 (654)
360 PRK10875 recD exonuclease V su 96.4 0.028 6E-07 73.0 14.1 155 1331-1509 142-300 (615)
361 PF13401 AAA_22: AAA domain; P 96.4 0.0099 2.1E-07 61.5 8.0 25 510-534 3-27 (131)
362 TIGR00596 rad1 DNA repair prot 96.2 0.2 4.3E-06 66.9 20.6 230 592-893 2-518 (814)
363 TIGR01448 recD_rel helicase, p 96.2 0.028 6E-07 74.9 12.8 64 494-567 322-385 (720)
364 KOG1132 Helicase of the DEAD s 96.1 0.023 5.1E-07 72.9 10.6 79 495-573 21-133 (945)
365 cd00009 AAA The AAA+ (ATPases 96.1 0.023 5E-07 59.3 9.0 20 511-530 19-38 (151)
366 PRK12723 flagellar biosynthesi 96.0 0.11 2.4E-06 63.8 15.6 132 512-681 175-307 (388)
367 PTZ00112 origin recognition co 96.0 0.073 1.6E-06 69.3 14.1 42 513-558 782-824 (1164)
368 COG3421 Uncharacterized protei 96.0 0.11 2.4E-06 64.0 14.9 145 517-676 3-171 (812)
369 TIGR01448 recD_rel helicase, p 95.9 0.042 9.2E-07 73.2 12.4 62 1340-1405 322-383 (720)
370 COG3587 Restriction endonuclea 95.9 0.029 6.2E-07 71.8 9.8 197 819-1059 482-682 (985)
371 COG1875 NYN ribonuclease and A 95.8 0.078 1.7E-06 62.2 12.3 64 492-563 225-289 (436)
372 PF00580 UvrD-helicase: UvrD/R 95.8 0.016 3.4E-07 69.7 7.2 71 1342-1416 1-71 (315)
373 PF00448 SRP54: SRP54-type pro 95.8 0.099 2.1E-06 58.3 12.8 130 513-679 3-133 (196)
374 PRK12377 putative replication 95.8 0.073 1.6E-06 61.4 12.0 48 1356-1409 100-147 (248)
375 PRK12377 putative replication 95.7 0.062 1.4E-06 62.0 11.1 47 511-569 101-147 (248)
376 PF05970 PIF1: PIF1-like helic 95.7 0.024 5.2E-07 69.7 8.2 109 495-637 1-116 (364)
377 PRK13889 conjugal transfer rel 95.7 0.097 2.1E-06 71.1 14.4 125 1340-1510 345-470 (988)
378 PRK13826 Dtr system oriT relax 95.7 0.097 2.1E-06 71.5 14.4 62 494-566 380-441 (1102)
379 KOG1803 DNA helicase [Replicat 95.7 0.018 4E-07 71.2 6.7 67 1340-1411 184-250 (649)
380 TIGR02768 TraA_Ti Ti-type conj 95.6 0.095 2.1E-06 70.2 14.0 101 1340-1477 351-452 (744)
381 COG1875 NYN ribonuclease and A 95.6 0.048 1E-06 63.9 9.4 64 1338-1403 225-289 (436)
382 COG1419 FlhF Flagellar GTP-bin 95.6 0.35 7.5E-06 58.6 16.9 143 511-705 203-345 (407)
383 PRK06526 transposase; Provisio 95.4 0.12 2.6E-06 60.0 12.2 24 508-531 95-118 (254)
384 PRK06526 transposase; Provisio 95.4 0.092 2E-06 61.0 11.1 25 1355-1379 96-120 (254)
385 PHA03333 putative ATPase subun 95.4 0.28 6.1E-06 62.7 15.8 157 496-681 170-342 (752)
386 PRK12723 flagellar biosynthesi 95.4 0.22 4.8E-06 61.2 14.6 130 1358-1521 175-306 (388)
387 KOG1805 DNA replication helica 95.3 0.052 1.1E-06 70.4 9.2 123 1339-1477 667-809 (1100)
388 PRK11054 helD DNA helicase IV; 95.3 0.037 8E-07 73.0 8.2 90 494-614 195-285 (684)
389 PRK14722 flhF flagellar biosyn 95.2 0.15 3.2E-06 62.1 12.4 123 508-671 134-258 (374)
390 cd00009 AAA The AAA+ (ATPases 95.2 0.18 4E-06 52.4 11.9 21 1357-1377 19-39 (151)
391 PRK10919 ATP-dependent DNA hel 95.2 0.036 7.9E-07 73.5 7.8 92 495-614 2-94 (672)
392 PRK08181 transposase; Validate 95.1 0.18 3.8E-06 59.0 12.3 61 1341-1407 87-150 (269)
393 PRK08181 transposase; Validate 95.1 0.21 4.5E-06 58.4 12.9 59 496-566 88-149 (269)
394 TIGR02881 spore_V_K stage V sp 95.1 0.12 2.6E-06 60.6 11.1 20 512-531 43-62 (261)
395 PRK12901 secA preprotein trans 95.0 0.026 5.5E-07 74.6 5.3 112 1360-1477 185-303 (1112)
396 PF05621 TniB: Bacterial TniB 95.0 0.093 2E-06 61.2 9.3 115 1358-1508 62-187 (302)
397 PRK11889 flhF flagellar biosyn 95.0 0.47 1E-05 57.6 15.3 129 512-681 242-372 (436)
398 smart00382 AAA ATPases associa 94.9 0.061 1.3E-06 55.5 7.1 45 511-566 2-46 (148)
399 PF05621 TniB: Bacterial TniB 94.9 0.1 2.3E-06 60.8 9.3 121 512-666 62-186 (302)
400 PF05127 Helicase_RecD: Helica 94.9 0.011 2.4E-07 64.0 1.2 130 515-677 1-130 (177)
401 PRK07952 DNA replication prote 94.8 0.66 1.4E-05 53.5 15.7 62 1339-1406 74-142 (244)
402 PF00308 Bac_DnaA: Bacterial d 94.8 0.52 1.1E-05 53.7 14.7 123 1343-1513 16-142 (219)
403 PRK07952 DNA replication prote 94.8 0.38 8.2E-06 55.4 13.5 26 512-538 100-125 (244)
404 KOG0391 SNF2 family DNA-depend 94.8 0.09 2E-06 68.7 9.1 138 495-648 615-762 (1958)
405 PRK14974 cell division protein 94.7 0.36 7.9E-06 58.2 13.7 122 512-672 141-266 (336)
406 KOG1805 DNA replication helica 94.7 0.13 2.8E-06 67.0 10.2 122 493-636 667-809 (1100)
407 KOG0384 Chromodomain-helicase 94.6 0.092 2E-06 69.7 8.9 160 1340-1521 369-547 (1373)
408 TIGR02928 orc1/cdc6 family rep 94.6 0.34 7.3E-06 59.8 13.7 26 511-537 40-65 (365)
409 PRK13826 Dtr system oriT relax 94.6 0.44 9.5E-06 65.4 15.5 126 1339-1510 379-505 (1102)
410 KOG1132 Helicase of the DEAD s 94.6 0.19 4.1E-06 65.0 11.2 74 1341-1415 21-134 (945)
411 KOG0989 Replication factor C, 94.5 0.2 4.3E-06 57.8 10.2 45 620-671 126-170 (346)
412 cd01120 RecA-like_NTPases RecA 94.5 0.42 9.2E-06 50.9 12.6 40 514-564 2-41 (165)
413 PF05970 PIF1: PIF1-like helic 94.5 0.16 3.4E-06 62.6 10.3 124 1341-1496 1-131 (364)
414 PF00308 Bac_DnaA: Bacterial d 94.5 0.52 1.1E-05 53.6 13.7 123 497-672 16-142 (219)
415 PRK08903 DnaA regulatory inact 94.5 0.31 6.7E-06 55.8 12.1 33 497-529 25-60 (227)
416 PHA02533 17 large terminase pr 94.4 0.59 1.3E-05 60.0 15.3 123 1341-1477 59-182 (534)
417 TIGR01547 phage_term_2 phage t 94.3 0.37 8.1E-06 60.2 13.2 137 513-672 3-142 (396)
418 COG1444 Predicted P-loop ATPas 94.2 0.59 1.3E-05 61.0 14.7 143 498-675 217-361 (758)
419 CHL00181 cbbX CbbX; Provisiona 94.1 0.4 8.7E-06 56.8 12.3 20 512-531 60-79 (287)
420 PRK14964 DNA polymerase III su 94.1 0.24 5.2E-06 62.6 10.9 42 619-667 112-153 (491)
421 PRK04296 thymidine kinase; Pro 94.1 0.034 7.3E-07 61.8 3.0 35 513-558 4-38 (190)
422 PRK13833 conjugal transfer pro 94.1 0.13 2.8E-06 61.5 8.0 62 1339-1403 126-187 (323)
423 PRK08727 hypothetical protein; 94.0 0.37 7.9E-06 55.5 11.5 25 512-537 42-66 (233)
424 smart00492 HELICc3 helicase su 94.0 0.2 4.3E-06 52.7 8.4 86 798-885 25-135 (141)
425 cd01124 KaiC KaiC is a circadi 94.0 0.088 1.9E-06 58.1 6.1 48 513-572 1-48 (187)
426 COG3587 Restriction endonuclea 94.0 0.16 3.5E-06 65.3 8.8 146 1355-1513 72-244 (985)
427 PRK14087 dnaA chromosomal repl 94.0 0.57 1.2E-05 59.2 13.9 109 1358-1512 142-250 (450)
428 TIGR01074 rep ATP-dependent DN 94.0 0.12 2.5E-06 69.2 8.3 86 495-608 1-86 (664)
429 TIGR03015 pepcterm_ATPase puta 93.9 0.5 1.1E-05 55.5 12.7 38 1339-1376 21-62 (269)
430 TIGR01075 uvrD DNA helicase II 93.9 0.13 2.9E-06 69.1 8.7 109 494-633 3-113 (715)
431 PF04408 HA2: Helicase associa 93.9 0.052 1.1E-06 53.7 3.6 65 975-1046 2-66 (102)
432 PTZ00112 origin recognition co 93.9 0.6 1.3E-05 61.3 13.7 40 1357-1397 780-823 (1164)
433 PRK08116 hypothetical protein; 93.9 0.69 1.5E-05 54.3 13.5 45 1359-1409 116-160 (268)
434 PRK13894 conjugal transfer ATP 93.9 0.13 2.8E-06 61.7 7.7 61 1339-1402 130-190 (319)
435 COG3421 Uncharacterized protei 93.9 0.11 2.5E-06 63.9 7.1 152 1362-1521 2-175 (812)
436 PRK14960 DNA polymerase III su 93.9 0.19 4.1E-06 64.6 9.4 30 502-531 25-57 (702)
437 KOG0392 SNF2 family DNA-depend 93.9 0.23 4.9E-06 66.0 10.1 157 1341-1513 975-1141(1549)
438 PRK08116 hypothetical protein; 93.8 0.84 1.8E-05 53.6 14.1 80 477-569 70-160 (268)
439 PRK11773 uvrD DNA-dependent he 93.8 0.15 3.2E-06 68.7 8.8 109 494-633 8-118 (721)
440 PRK14722 flhF flagellar biosyn 93.8 0.48 1E-05 57.8 12.2 121 1357-1513 137-259 (374)
441 PRK11889 flhF flagellar biosyn 93.8 1.4 3E-05 53.6 15.7 128 1358-1521 242-371 (436)
442 TIGR01075 uvrD DNA helicase II 93.8 0.21 4.6E-06 67.2 10.2 71 1340-1415 3-74 (715)
443 PRK11054 helD DNA helicase IV; 93.7 0.17 3.7E-06 66.9 9.0 81 1340-1425 195-275 (684)
444 PRK00411 cdc6 cell division co 93.7 0.59 1.3E-05 58.3 13.4 38 511-557 55-92 (394)
445 TIGR03420 DnaA_homol_Hda DnaA 93.7 0.29 6.2E-06 55.9 9.8 21 510-530 37-57 (226)
446 TIGR02782 TrbB_P P-type conjug 93.7 0.2 4.4E-06 59.7 8.8 62 1339-1403 114-175 (299)
447 PRK08691 DNA polymerase III su 93.7 0.29 6.4E-06 63.5 10.6 41 620-667 116-156 (709)
448 TIGR02760 TraI_TIGR conjugativ 93.6 3.3 7.1E-05 61.4 22.3 217 495-759 429-652 (1960)
449 PRK04296 thymidine kinase; Pro 93.6 0.17 3.6E-06 56.3 7.4 34 1360-1398 5-38 (190)
450 PRK06645 DNA polymerase III su 93.6 0.36 7.8E-06 61.4 11.2 19 513-531 45-63 (507)
451 PRK07003 DNA polymerase III su 93.6 0.4 8.7E-06 62.5 11.5 39 622-667 118-156 (830)
452 PRK10919 ATP-dependent DNA hel 93.6 0.11 2.4E-06 69.0 7.0 70 1341-1415 2-72 (672)
453 PRK14956 DNA polymerase III su 93.5 0.3 6.5E-06 61.1 10.0 28 504-531 30-60 (484)
454 TIGR01547 phage_term_2 phage t 93.5 0.36 7.7E-06 60.3 10.9 136 1360-1513 4-142 (396)
455 smart00382 AAA ATPases associa 93.5 0.2 4.4E-06 51.5 7.5 44 1357-1405 2-45 (148)
456 COG4962 CpaF Flp pilus assembl 93.5 0.19 4.1E-06 59.3 7.6 60 491-562 153-212 (355)
457 PRK06893 DNA replication initi 93.4 0.31 6.7E-06 55.9 9.3 25 512-537 40-64 (229)
458 COG1474 CDC6 Cdc6-related prot 93.3 0.26 5.6E-06 60.3 9.0 27 511-538 42-68 (366)
459 PRK12323 DNA polymerase III su 93.3 0.53 1.1E-05 60.6 11.8 40 621-667 122-161 (700)
460 PRK14949 DNA polymerase III su 93.3 0.41 8.9E-06 63.6 11.1 38 622-666 118-155 (944)
461 KOG0989 Replication factor C, 93.3 0.15 3.3E-06 58.7 6.3 46 1461-1513 126-171 (346)
462 PF00004 AAA: ATPase family as 93.2 0.29 6.4E-06 50.3 8.1 46 624-669 59-111 (132)
463 COG1484 DnaC DNA replication p 93.2 0.44 9.5E-06 55.4 10.2 52 1354-1411 102-153 (254)
464 PRK14958 DNA polymerase III su 93.1 0.36 7.8E-06 61.8 10.2 39 622-667 118-156 (509)
465 PRK07994 DNA polymerase III su 93.1 0.58 1.3E-05 61.0 12.1 39 621-666 117-155 (647)
466 PRK14961 DNA polymerase III su 93.1 0.34 7.4E-06 59.7 9.7 41 620-667 116-156 (363)
467 PRK08727 hypothetical protein; 93.1 1.1 2.5E-05 51.4 13.4 35 1358-1397 42-76 (233)
468 PF05876 Terminase_GpA: Phage 93.1 0.22 4.9E-06 64.4 8.3 175 1340-1530 15-200 (557)
469 PRK13833 conjugal transfer pro 93.1 0.21 4.5E-06 59.8 7.4 60 494-562 127-186 (323)
470 cd01122 GP4d_helicase GP4d_hel 93.1 0.49 1.1E-05 55.7 10.7 55 508-573 27-81 (271)
471 PRK12726 flagellar biosynthesi 93.0 0.91 2E-05 55.0 12.6 131 510-681 205-337 (407)
472 TIGR02782 TrbB_P P-type conjug 93.0 0.24 5.2E-06 59.1 7.8 60 494-562 115-174 (299)
473 PRK13894 conjugal transfer ATP 92.9 0.2 4.3E-06 60.2 7.0 60 494-562 131-190 (319)
474 PRK14087 dnaA chromosomal repl 92.9 0.92 2E-05 57.3 13.3 48 513-570 143-190 (450)
475 PHA02533 17 large terminase pr 92.9 1 2.2E-05 57.9 13.7 71 495-575 59-129 (534)
476 PRK05703 flhF flagellar biosyn 92.8 1.7 3.7E-05 54.4 15.4 130 511-681 221-352 (424)
477 PF05876 Terminase_GpA: Phage 92.8 0.19 4.1E-06 65.1 7.1 164 494-679 15-190 (557)
478 PRK14974 cell division protein 92.8 1 2.2E-05 54.4 12.8 122 1359-1513 142-266 (336)
479 PF00271 Helicase_C: Helicase 92.8 0.15 3.2E-06 47.5 4.6 36 1630-1665 4-39 (78)
480 COG1419 FlhF Flagellar GTP-bin 92.7 1.8 4E-05 52.6 14.6 128 1357-1521 203-332 (407)
481 TIGR03877 thermo_KaiC_1 KaiC d 92.7 0.67 1.5E-05 53.5 10.9 52 1357-1415 21-72 (237)
482 PRK08903 DnaA regulatory inact 92.7 1.1 2.5E-05 51.2 12.6 21 1356-1376 41-61 (227)
483 TIGR01073 pcrA ATP-dependent D 92.7 0.28 6.1E-06 66.2 8.8 92 494-614 3-95 (726)
484 PHA03368 DNA packaging termina 92.6 1.2 2.6E-05 57.0 13.5 140 501-669 245-389 (738)
485 PRK08084 DNA replication initi 92.6 1.2 2.7E-05 51.2 12.8 34 496-529 28-63 (235)
486 PRK05642 DNA replication initi 92.5 1.5 3.2E-05 50.5 13.3 35 1358-1397 46-80 (234)
487 PRK06893 DNA replication initi 92.5 1.3 2.7E-05 50.9 12.6 48 1462-1513 89-136 (229)
488 PRK11773 uvrD DNA-dependent he 92.5 0.25 5.4E-06 66.5 7.9 83 1339-1426 7-91 (721)
489 PRK05707 DNA polymerase III su 92.4 0.76 1.6E-05 55.5 11.1 36 496-531 4-42 (328)
490 cd00984 DnaB_C DnaB helicase C 92.4 0.99 2.1E-05 52.1 11.9 137 1357-1509 13-171 (242)
491 TIGR02880 cbbX_cfxQ probable R 92.4 0.73 1.6E-05 54.7 10.8 18 513-530 60-77 (284)
492 PRK06921 hypothetical protein; 92.4 0.76 1.7E-05 53.9 10.9 45 1357-1406 117-161 (266)
493 PF03354 Terminase_1: Phage Te 92.4 0.42 9.1E-06 61.2 9.5 72 1344-1416 1-80 (477)
494 PRK08084 DNA replication initi 92.4 1.1 2.4E-05 51.6 12.0 51 1343-1398 29-81 (235)
495 COG2256 MGS1 ATPase related to 92.4 0.54 1.2E-05 56.3 9.4 27 504-530 39-67 (436)
496 TIGR03877 thermo_KaiC_1 KaiC d 92.4 0.77 1.7E-05 53.0 10.8 51 510-572 20-70 (237)
497 KOG0386 Chromatin remodeling c 92.4 0.35 7.5E-06 63.3 8.3 125 1341-1478 394-529 (1157)
498 PRK14959 DNA polymerase III su 92.3 0.66 1.4E-05 60.0 10.9 32 501-532 25-59 (624)
499 PRK00149 dnaA chromosomal repl 92.3 0.89 1.9E-05 57.8 12.1 47 1358-1408 149-195 (450)
500 PRK05703 flhF flagellar biosyn 92.3 2.3 5.1E-05 53.2 15.5 120 1357-1513 221-344 (424)
No 1
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.8e-258 Score=2330.53 Aligned_cols=1435 Identities=66% Similarity=1.053 Sum_probs=1315.2
Q ss_pred HHHhhhhhccccccccccCCCCCCCCCCCCCCCcceeecCCCCCchhhhhccccccccchhhhhccCCCCccccccCCCC
Q 000324 166 LVSIGKLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDEEEEEDVAEPNASGAMQMGGGI 245 (1665)
Q Consensus 166 l~~l~k~ItD~~~~~~~~~~~~~~~~~~~d~~~gv~v~fd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (1665)
+|+|+|+||||...++.. ...+..+++..||+|.|++.|++++++..+.++++.++|++...++.....++-....
T Consensus 1 lV~l~k~itdy~~~~~sk----~~~d~~~~~~e~v~v~~~e~dde~~~~l~~~vkse~~ed~~~~~ee~~k~~kq~~~~~ 76 (1674)
T KOG0951|consen 1 LVKLGKLITDYELEQDSK----KVMDIGIDAAEGVEVEVEEIDDESLQDLFDMVKSELDEDDKNVKEEVAKFVKQVPAII 76 (1674)
T ss_pred CccccccceeeeecCCch----hhhhccccccccCccccccCcchhhhHHHHHhhhhhccchhhhhhhhhhhheeccccc
Confidence 589999999996554421 1223556777899999998877776544445543332221111000011111111110
Q ss_pred CCCCCCCccccCCCCCcccCChHHHHHHHHhHhccCCChHHHHHHHHHHHHHHhc-CChhHHHHHHHhccCCCChhHHHH
Q 000324 246 DDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKILAE-GDDREVENKLLYHLQFDKFSLIKF 324 (1665)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ 324 (1665)
+ +++...+ ....+++||++||||+++++|. ++..+|+....+..+|+. .+++++|++|+.+++|++|.+|+.
T Consensus 77 k-~el~~d~---q~t~~~dIda~~LQR~irk~ye---la~~~Qe~~~k~~~ilr~~~~~~~lE~~L~~ll~~e~~slV~~ 149 (1674)
T KOG0951|consen 77 K-TELLIDA---QKTRESDIDAPWLQRKIRKVYE---LASRLQEKERKAAEILRTASDDGDLEPKLVVLLQFEKISLVEF 149 (1674)
T ss_pred c-chhhhhh---hhcchhhhhHHHHHHHHHHHHh---cchhhHHHHHHHHHhHhhccCchhhhHHHHHhhhhhhhHHHHH
Confidence 1 1100001 1145899999999999999999 666666666666667766 689999999999999999999999
Q ss_pred HHhchhhhHhHhhhhhcccHHHHHHHHHHHhcCCCCHHHHHHHHHHhHHHHHHHHhhhhHhHHHHHHhhhccccCCCCCC
Q 000324 325 LLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRD 404 (1665)
Q Consensus 325 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1665)
|++||++|+|||+|++|..++|+..|++.|+..+..+..++.++..+......+.-+..+.++. +.++..
T Consensus 150 l~kNr~~i~~~t~L~~aaresE~~siEe~m~~lgp~l~d~V~~~~a~~~~~~~qeek~~~l~~~--e~~~~~-------- 219 (1674)
T KOG0951|consen 150 LRKNRLGIVWCTRLARAARESERLSIEEIMRFLGPELNDIVAKYIATRQTKSEQEEKEKKLEKR--EELLVS-------- 219 (1674)
T ss_pred HHhhcchhhHHHHhhhhhccchhccHHHHHhhcChhhHHHHHHHHhhhcccccchhhhhhhhcc--chhhhh--------
Confidence 9999999999999999988899999999999986326778888766543221110000011111 111100
Q ss_pred CCCCccCCCCCCCCCccccccccccccccCCcccccceeeCCCCCccccCCCceEEecCCCCCCCCCCCCCccccCCCCh
Q 000324 405 RRGLVDRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPE 484 (1665)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~~~~~~~~eei~vp~~~~~~~~~~~~l~~i~~Lp~ 484 (1665)
. ....++...+|..+++.+|++.+.|++|+++|.+++|.+|+|+++...++|+++|||++.+.|+..++.+..++++|.
T Consensus 220 ~-~~ls~td~~~v~~~~~~iDLekt~ftEGe~lm~e~~c~lP~GS~rl~kk~yeevhVPa~~~~pf~~~Ekl~~iselP~ 298 (1674)
T KOG0951|consen 220 V-IALSKTDVLGVLEMRPVIDLEKTCFTEGEELMQEGKCKLPQGSFRLKKKGYEEVHVPAPSYFPFHKEEKLVKISELPK 298 (1674)
T ss_pred h-hhhcccccccccccCcccchhhhhhhhhhhhhccCceecCCccEEEecCCceEEeCCCCCCCCCCccceeEeecCCcc
Confidence 0 011112233457789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhcCCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHH
Q 000324 485 WAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (1665)
Q Consensus 485 ~~~~~f~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~ 564 (1665)
|.+++|.|..+||++|++++++++.+++|+++|||||+|||++|++.||+.+..+.+.+|..+...++++|++|+++||+
T Consensus 299 Wnq~aF~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvq 378 (1674)
T KOG0951|consen 299 WNQPAFFGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQ 378 (1674)
T ss_pred hhhhhcccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888889999999999999999999
Q ss_pred HHHHHHHHhhccCCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHH
Q 000324 565 EVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLE 644 (1665)
Q Consensus 565 q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le 644 (1665)
+++..|.+++.++|++|+++|||.+.+.+++.+++|||||||+||.++|+..++.+.+.++++||||+|++||+|||++|
T Consensus 379 E~VgsfSkRla~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLE 458 (1674)
T KOG0951|consen 379 EMVGSFSKRLAPLGITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLE 458 (1674)
T ss_pred HHHHHHHhhccccCcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHHHHHHHH
Q 000324 645 SIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCY 724 (1665)
Q Consensus 645 ~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1665)
+|++|+.+..+.....+|+||||||||||+||+.||++++ .++|+|+++|||+|+.|+|+|++++++.+++++||+.||
T Consensus 459 SIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~-~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~y 537 (1674)
T KOG0951|consen 459 SIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDP-EGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACY 537 (1674)
T ss_pred HHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCc-ccccccCcccCcCCccceEeccccCCchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCC
Q 000324 725 EKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGM 804 (1665)
Q Consensus 725 ~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm 804 (1665)
++++++.+++|+|||||||+++.++|+.+++.+...+++..|++.++.++++++.+++...|.+|++++++|||+|||||
T Consensus 538 eKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl 617 (1674)
T KOG0951|consen 538 EKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGL 617 (1674)
T ss_pred HHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEE
Q 000324 805 TRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGII 884 (1665)
Q Consensus 805 ~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~ii 884 (1665)
++.||..++++|++|+++|||||+|+|||||+|+++|||+||++|||++|+|.++|+.|.+||+|||||||+|+.|+++|
T Consensus 618 ~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegii 697 (1674)
T KOG0951|consen 618 NRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGII 697 (1674)
T ss_pred CcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCcHHHHHHhhcCCCccccchhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhH
Q 000324 885 ITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITL 964 (1665)
Q Consensus 885 l~~~~~~~~y~~ll~~~~piES~l~~~l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l 964 (1665)
++.+++++||.+++|+++||||++.++|.|.|||||+.| +++.+|+++||+|||+|+||.+||..|+++++ .+|..+
T Consensus 698 it~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~G-v~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~--~~d~~l 774 (1674)
T KOG0951|consen 698 ITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLG-VRSARDAVDWLGYTYLYVRMVRNPTLYGVSPE--ASDRLL 774 (1674)
T ss_pred ccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcc-hhhHHHHHhhhcceeeEEeeccCchhccCCcc--cchHHH
Confidence 999999999999999999999999999999999999999 99999999999999999999999999999997 458999
Q ss_pred HHHHHHHHHHHHHHHhHcCCcccccCCCccccChHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHhcCCccCCCCcC
Q 000324 965 GERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTV 1044 (1665)
Q Consensus 965 ~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~~s~s~Ef~~i~~ 1044 (1665)
++.+.+++|+|+..|+++|+|.|+..+|.+++|++|+|+|+|||.+.+|..|++.|+++|++++++++||+|.||++++|
T Consensus 775 e~~r~~lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~~~yn~~L~~~~~~i~lfrifs~seEfk~~sv 854 (1674)
T KOG0951|consen 775 EQRRADLVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSMATYNELLKETMSEIDLFRIFSKSEEFKYVSV 854 (1674)
T ss_pred HHHHhhhHHHHHhhHhhcCccccccccCcccchhhccccceeeeecchHHHHHhhhhhhhccchhhhhhhhccccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHcCCCCCCCcchhhHHHHHHhHHHHHHHHHHHHHHcCCHHHHH
Q 000324 1045 RQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAE 1124 (1665)
Q Consensus 1045 R~~E~~~l~~l~~~~~~~~~~~~~~~~~K~~~Llqa~is~~~~~~~~l~~D~~~i~~~a~rl~~a~~ei~~~~g~~~~a~ 1124 (1665)
|++|+.+|++|++++|||+++.+++|.+|||+|||+|||+++++||+|.+||+||.|+|+|++||+|||++++||+.++.
T Consensus 855 r~~ek~el~~l~~~vpIpire~l~~p~akinvllq~yiS~lk~eG~al~~dmv~i~q~agRl~Ra~fei~l~rgw~~~~~ 934 (1674)
T KOG0951|consen 855 REEEKMELAKLLERVPIPIRENLDEPSAKINVLLQSYISQLKLEGFALTSDMVYITQSAGRLFRALFEIVLKRGWAGLAQ 934 (1674)
T ss_pred cHHHHHHhhhhcccCCcCchhccccchHHHHHHHHHHHhhcccccceeeeeEEEeccchHHHHHHHHHHHhhcCcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcccCCCCCcccccCCCCHHHHHHHHhCCCCchhhccCChHHHhhhhcCchhhHHHHHHHhcCCcceEEEE
Q 000324 1125 KALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAH 1204 (1665)
Q Consensus 1125 ~~l~L~k~i~~~~W~~~~pL~Q~~~i~~~~~~~l~~~~~~~~~l~~l~~~el~~ll~~~~~~~~i~~~~~~~P~l~l~~~ 1204 (1665)
.+|.+|||+++|||++++|||||++++.++++++|++.++|.++++|++.|++++++.|++|+.++.++++||++.++++
T Consensus 935 ~~l~~ck~v~~r~w~~~~plrqf~~~~~ev~~~lE~k~~~~~r~~~l~~~elg~lI~~~k~G~~l~~~~~~fpk~s~~~~ 1014 (1674)
T KOG0951|consen 935 MALNLCKMVEKRMWPTQTPLRQFKGCPKEVLRRLEKKELPWGRYYDLDPAELGELIGVPKMGKPLHLFIRQFPKLSVSAH 1014 (1674)
T ss_pred HHHHhHhHhhhhcccccCchhhcCCCCHHHHHHHHhccCcchhhhccCHHHHHHHhcCcccChhHHHHHHhcccceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCceEEEEEEEccCCccCCCCCCCcccEEEEEEeCCCCeEEEEeeeeeeecccccceeEEEeeccCCCCCCceEEE
Q 000324 1205 VQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIR 1284 (1665)
Q Consensus 1205 v~pit~~~l~v~l~i~~~~~w~~~~h~~~e~~wi~v~d~~~~~il~~~~~~l~~~~~~~~~~~~f~vp~~~p~p~~y~v~ 1284 (1665)
+||||++.++|+|+++|+|.||+++||..|+||++|||.++++|+|+++|.++++ +|.+.|++|+++| ||+|||+
T Consensus 1015 vqpitr~~~~~~l~i~~~f~wd~~vh~~~e~F~i~ved~dge~il~~e~~~~~k~----~~~v~ft~~~~~~-pP~~fi~ 1089 (1674)
T KOG0951|consen 1015 VQPITRSVYRVELTITPDFDWDDKVHGSVEPFWIIVEDTDGEKILHHEFFLLKKK----EHTVNFTVPLFEP-PPQYFIR 1089 (1674)
T ss_pred eeeeeeeEEEEEEEEeecccchhhhcccccceEEEEEccCccceeeeeeEEeccC----ceEEEEEeecCCC-CCceEEE
Confidence 9999999999999999999999999999999999999999999999999999984 8999999999999 9999999
Q ss_pred EeecccccccccccccccccCCCCCCCCCCCCCCCCCCcccccchhHHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEEC
Q 000324 1285 VVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAA 1364 (1665)
Q Consensus 1285 ~vSD~wl~~e~~~~vs~~~l~lp~~~~~~t~ll~l~p~~~~~L~~~~~~~l~~~f~~~~~iQ~qa~~~ll~~~dnvlv~A 1364 (1665)
++||+|++++..+|++|+|+++|+++||||+++|++|+|++++.++.+..+|..| ||+|+|+|+.+|++++||+|+|
T Consensus 1090 lvSd~wl~s~~~~Pvsfr~l~lpek~p~pt~lld~~~~~~~~l~N~~~~~lf~~~---n~iqtqVf~~~y~~nd~v~vga 1166 (1674)
T KOG0951|consen 1090 LVSDRWLHSETVLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNPSFETLFQDF---NPIQTQVFTSLYNTNDNVLVGA 1166 (1674)
T ss_pred EeeccccCCCcccccchhhccCcccCCCCchhhhccccchhccCCcchhhhcccc---CCceEEEEeeeecccceEEEec
Confidence 9999999999999999999999999999999999999999999999999998744 9999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchhccCCCcEEEE
Q 000324 1365 PTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIIS 1444 (1665)
Q Consensus 1365 pTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~l~~~~IIV~ 1444 (1665)
|+|||||.|+++++++ . .+.+ +++||+|..+.+..++..|.++|+..+|+.++.++|+.+.+.+++..++|+|+
T Consensus 1167 ~~gsgkt~~ae~a~l~---~-~~~~--~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~lkl~~~~~vii~ 1240 (1674)
T KOG0951|consen 1167 PNGSGKTACAELALLR---P-DTIG--RAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDLKLLQKGQVIIS 1240 (1674)
T ss_pred CCCCchhHHHHHHhcC---C-ccce--EEEEecchHHHHHHHHHHHHHhhccccCceEEecCCccccchHHhhhcceEEe
Confidence 9999999999999996 2 2333 99999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCChHHHHHHhccc
Q 000324 1445 TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGAT 1524 (1665)
Q Consensus 1445 TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~~dl~~wl~~~ 1524 (1665)
||++|+.+ + .+|.++++|.||+|++++..|+.+|++++ |++|.+++.++.|++++|.+++|++|+ +|..
T Consensus 1241 tpe~~d~l-q------~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~~k~ir~v~ls~~lana~d~---ig~s 1309 (1674)
T KOG0951|consen 1241 TPEQWDLL-Q------SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQLEKKIRVVALSSSLANARDL---IGAS 1309 (1674)
T ss_pred chhHHHHH-h------hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHHHHhheeEEEeehhhccchhh---cccc
Confidence 99999987 1 58899999999999999888999999999 999999999999999999999999999 9999
Q ss_pred CCcEEecCCCCCccceEEEEeecccchhhHHHHhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCc
Q 000324 1525 SHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQ 1604 (1665)
Q Consensus 1525 ~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~ 1604 (1665)
..++|||.|+.||+|++++++++...++.+++.+|.+|.|.++..+...++|++||+++|++|+.+|..|+.++.++.+.
T Consensus 1310 ~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~ 1389 (1674)
T KOG0951|consen 1310 SSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPD 1389 (1674)
T ss_pred ccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcHH
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999988877333
Q ss_pred ccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEE
Q 000324 1605 KSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICY 1664 (1665)
Q Consensus 1605 ~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLV 1664 (1665)
|+....++ .|..|++.+.+||+ |.||+..+..++-.+|..|.|+|+|
T Consensus 1390 ---~l~~~~e~--------~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v~v 1436 (1674)
T KOG0951|consen 1390 ---YLLSELEE--------CDETLRESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQVCV 1436 (1674)
T ss_pred ---HHHHHHhc--------chHhhhhccccccc--ccccCcchHHHHHHHHhcCcEEEEE
Confidence 33221111 67899999999999 9999999999999999999999987
No 2
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2.1e-202 Score=1826.49 Aligned_cols=1193 Identities=49% Similarity=0.803 Sum_probs=1124.7
Q ss_pred CCccccccccccccccCCcccccceeeCCCCCccccCCCceEEecCCCCCCCCCCCCCccccCCCChhhHhhcCCCCCCC
Q 000324 418 LGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLN 497 (1665)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~~~~~~~~eei~vp~~~~~~~~~~~~l~~i~~Lp~~~~~~f~g~~~l~ 497 (1665)
..++++++--.+.+.. +.++.+.++.+|+|+.|.+.+.|||+.+|+..+++ ...+.++.|++||+..++.|.+|+.||
T Consensus 35 ~~~~~vf~~~~~~~~~-~~~~~~~k~~lp~~~~r~~~~~~eE~~~P~s~~~~-~~~~k~~~isdld~~~rk~~f~f~~fN 112 (1230)
T KOG0952|consen 35 IYYPHVFESRGLGMTD-AIFIIGIKFTLPEGSEREDYKTYEEVKIPASVPMP-MDGEKLLSISDLDDVGRKGFFSFEEFN 112 (1230)
T ss_pred ccchhHHHhhhhccch-hhhhccceEeccCCccccccCcceEEecCccCCCc-cccccceeEEecchhhhhhcccHHHHH
Confidence 3456677655444332 24556679999999999999999999999998888 566788999999999998888999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccC
Q 000324 498 RVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMY 577 (1665)
Q Consensus 498 ~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~ 577 (1665)
.+|+.|||.+|++++|+|||||||||||.+|+|+||+.+.++. ..+.+..+++|||||+||||||.|+++.|.++|.++
T Consensus 113 ~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~-~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~ 191 (1230)
T KOG0952|consen 113 RIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHE-EQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPL 191 (1230)
T ss_pred HHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhc-cccccccCCceEEEEechHHHHHHHHHHHhhhcccc
Confidence 9999999999999999999999999999999999999998742 336677789999999999999999999999999999
Q ss_pred CcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcC-CCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhh
Q 000324 578 DVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSG-DRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIET 656 (1665)
Q Consensus 578 gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~-~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~ 656 (1665)
|++|.++|||+++.+.++..++|||+||||||+++|++. +..+++.|+||||||+|+|+|+|||++|.||+|++|+++.
T Consensus 192 gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~ves 271 (1230)
T KOG0952|consen 192 GISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVES 271 (1230)
T ss_pred cceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999985 4567799999999999999999999999999999999999
Q ss_pred ccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHHHHHHHHHHHHHHhC-CCe
Q 000324 657 TKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAG-KHQ 735 (1665)
Q Consensus 657 ~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~ 735 (1665)
.+..+||||||||+||++|+|.||++++..++|+|+..|||+|+.+.++|.+.++.......+.+.||+++.+... ++|
T Consensus 272 sqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~q 351 (1230)
T KOG0952|consen 272 SQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQ 351 (1230)
T ss_pred hhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCe
Confidence 9999999999999999999999999999999999999999999999999999886666677888999999887665 889
Q ss_pred EEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHH
Q 000324 736 VLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDL 815 (1665)
Q Consensus 736 vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~ 815 (1665)
++||||+|+++.++|+.|.+.+........|++. .+++.|++++++|+++|||||.++||..+++.
T Consensus 352 VlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~--------------~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~ 417 (1230)
T KOG0952|consen 352 VLVFVHSRNETIRTAKKLRERAETNGEKDLFLPS--------------PRNKQLKELFQQGMGIHHAGMLRSDRQLVEKE 417 (1230)
T ss_pred EEEEEecChHHHHHHHHHHHHHHhcCcccccCCC--------------hhhHHHHHHHHhhhhhcccccchhhHHHHHHH
Confidence 9999999999999999999998877766666543 15678999999999999999999999999999
Q ss_pred HhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcHHHHH
Q 000324 816 FGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYL 895 (1665)
Q Consensus 816 F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~ 895 (1665)
|..|.++|||||+|+|||||+||+.|||+||+.||..+|+++++++.|++|++|||||||||+.|.++|+|+.+.+++|.
T Consensus 418 F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~ 497 (1230)
T KOG0952|consen 418 FKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYE 497 (1230)
T ss_pred HhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCccccchhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHHHHHHH
Q 000324 896 SLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTA 975 (1665)
Q Consensus 896 ~ll~~~~piES~l~~~l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a 975 (1665)
++++++.||||+|..+|.|||||||++|||+++++|++||+|||||+||.+||..||+..+.+..||.+..++.+++..+
T Consensus 498 sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~ 577 (1230)
T KOG0952|consen 498 SLLTGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMRKNPMAYGISYEELEPDPRLESHRRELCLVA 577 (1230)
T ss_pred HHHcCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeEEEEeccChHHhhhhhhcccCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred HHHHhHcCCcccccCCCccccChHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHhcCCccCCCCcCChhHHHHHHHH
Q 000324 976 ATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKL 1055 (1665)
Q Consensus 976 ~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~~s~s~Ef~~i~~R~~E~~~l~~l 1055 (1665)
+..|.+..||.+|.+++.+.+|++||+||+|||+|+||+.|++..++.+++.++|.++|+|+||..|++|++|+++|++|
T Consensus 578 ~~~L~~~qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~nn~~k~~~se~~iL~lis~aeEfs~ik~R~eE~k~l~el 657 (1230)
T KOG0952|consen 578 AMELDKVQMIRFDERTGYLKSTDLGRVASNYYIKYETMETFNNLPKSFYSEDDILALISMAEEFSQIKVREEEKKELKEL 657 (1230)
T ss_pred HHHhhhhheEEEecccceEcccchhhhhhhhhhhhHHHHHHHhcccccCCHHHHHHHHHhhHhhhhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCCChHHHHHHHHHHHHcCCCCCCCcchhhHHHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHc
Q 000324 1056 LDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTK 1135 (1665)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~K~~~Llqa~is~~~~~~~~l~~D~~~i~~~a~rl~~a~~ei~~~~g~~~~a~~~l~L~k~i~~ 1135 (1665)
++..-....-+.+ ..|+|+|+|+||||..+..|+|.+|..|+.|||+||.||+|+++..++|...+.+++.|||||++
T Consensus 658 ~~~~~~~~~~~~~--~gk~nil~q~~Is~~~~~~f~L~sD~~yv~qna~ri~ralf~i~~~~~~~~~~~~~l~l~k~ier 735 (1230)
T KOG0952|consen 658 NEDSCEKYPFGGE--KGKVNILLQAYISRTEVKDFSLMSDSLYVAQNAGRISRALFQIVLRQNWHLLSNRMLNLCKRIER 735 (1230)
T ss_pred Hhccccccccccc--chhHHHHHHhhhhccceeeeeeccCcccccccHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 9763221111122 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccccCCCCHHHHHHHHhCCCCchhhccCChHHHhhhhcCchhhHHHHHHHhcCCcceEEEEEeeccCceEEE
Q 000324 1136 RMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKV 1215 (1665)
Q Consensus 1136 ~~W~~~~pL~Q~~~i~~~~~~~l~~~~~~~~~l~~l~~~el~~ll~~~~~~~~i~~~~~~~P~l~l~~~v~pit~~~l~v 1215 (1665)
+||...+||+||+.+.. ++ ++++. .+.+|..+++++++++.++| ++.++.+|.+++++.++|+|++++++
T Consensus 736 ~mw~~~~~l~qf~~~~~---~~-~~~~~---~l~~L~~~~~g~~w~~~~~~---~k~l~~ip~v~v~a~~~p~t~~vlri 805 (1230)
T KOG0952|consen 736 RMWDFFIPLKQFTLLLN---RK-ERKKL---TLLLLRKDELGELWHNVPYG---LKQLSGIPLVNVEALIQPITRNVLRI 805 (1230)
T ss_pred HHHhhhhhhhcCCcccc---hh-hhhcc---hHHhhhhhhhccccccCchh---hhhhccCCceehhhhhccchhhhhee
Confidence 99999999999998776 44 44443 78899999999999988888 88999999999999999999999999
Q ss_pred EEEEccCCccCCCCCCCcccEEEEEEeCCCCeEEEEeeeeeeecccccceeEEEeeccCCCCCCceEEEEeecccccccc
Q 000324 1216 ELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQT 1295 (1665)
Q Consensus 1216 ~l~i~~~~~w~~~~h~~~e~~wi~v~d~~~~~il~~~~~~l~~~~~~~~~~~~f~vp~~~p~p~~y~v~~vSD~wl~~e~ 1295 (1665)
.+.++|+|.|++.+||+...+ +|++|.+...++|++.+.+.++..++.+.+.|++|+++|+|+++.++.+||.|++++.
T Consensus 806 ~~~~~~~f~w~~~~hg~~g~~-i~~ed~~~~~i~h~e~~~~~~~~~~~s~~lvf~ipis~pLps~~~~~~~s~~~l~~e~ 884 (1230)
T KOG0952|consen 806 EVAITPDFEWNDGIHGKAGQP-IFKEDSSLLPILHIEVFLVNCKKVNESQLLVFTIPISDPLPSQIRHRAVSDNWLGAET 884 (1230)
T ss_pred eeccCCceEEecccccccCce-eEeecCCCCcceeeeeehhhhhhhhhhhheeEEeecccCCccceEEeeecccccCCce
Confidence 999999999999999998777 9999999999999999999988888999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCCcccccchhHHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHH
Q 000324 1296 VLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSE 1375 (1665)
Q Consensus 1296 ~~~vs~~~l~lp~~~~~~t~ll~l~p~~~~~L~~~~~~~l~~~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~ 1375 (1665)
..+++++|+++|...++.|+++++.|+|..+|.+..++.+|+ .|+|+|++.|..+|+.+.|+++.+|||+|||++|+
T Consensus 885 ~~~~s~~~~il~~~~~~~t~ll~l~plp~~~L~~~~~e~~~~---~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae 961 (1230)
T KOG0952|consen 885 VYPLSFQHLILPDNEPPLTELLDLRPLPSSALKNVVFEALYK---YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAE 961 (1230)
T ss_pred eccccccceeccccccccccccccCCCcchhhccccHHHhhc---ccCCccceEEEEEeecchhhhhcCCccCcchhHHH
Confidence 999999999999999999999999999999999999999987 99999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHh
Q 000324 1376 FAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRR 1455 (1665)
Q Consensus 1376 l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~ 1455 (1665)
+++++.+... +.. +++||+|.++|+....++|.+++... |++++.++|+...+...+..++++|+||++|+.++|.
T Consensus 962 ~a~~~~~~~~-p~~--kvvyIap~kalvker~~Dw~~r~~~~-g~k~ie~tgd~~pd~~~v~~~~~~ittpek~dgi~Rs 1037 (1230)
T KOG0952|consen 962 LAIFRALSYY-PGS--KVVYIAPDKALVKERSDDWSKRDELP-GIKVIELTGDVTPDVKAVREADIVITTPEKWDGISRS 1037 (1230)
T ss_pred HHHHHHhccC-CCc--cEEEEcCCchhhcccccchhhhcccC-CceeEeccCccCCChhheecCceEEcccccccCcccc
Confidence 9999988883 445 99999999999999999999888766 9999999999999988899999999999999999999
Q ss_pred hhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCChHHHHHHhcccCCcEEecCCCC
Q 000324 1456 WKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGV 1535 (1665)
Q Consensus 1456 ~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~~dl~~wl~~~~~~~~~f~~~~ 1535 (1665)
|..++.++++.++|+||.|++++++||++|.+.++++++.++++..+|++++|..++|+.|+++|++.... |||.|.+
T Consensus 1038 w~~r~~v~~v~~iv~de~hllg~~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~na~dla~wl~~~~~--~nf~~sv 1115 (1230)
T KOG0952|consen 1038 WQTRKYVQSVSLIVLDEIHLLGEDRGPVLEVIVSRMNYISSQTEEPVRYLGLSTALANANDLADWLNIKDM--YNFRPSV 1115 (1230)
T ss_pred ccchhhhccccceeecccccccCCCcceEEEEeeccccCccccCcchhhhhHhhhhhccHHHHHHhCCCCc--CCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999877 9999999
Q ss_pred CccceEEEEeecccchhhHHHHhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCccc
Q 000324 1536 RPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEE 1615 (1665)
Q Consensus 1536 rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~ 1615 (1665)
||+|+++++++|+..+++.++.+|++|+++++..+ ++.+|+|||+.+|++++.+|..|+..+..++.+.+ |+++++.+
T Consensus 1116 rpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~-sp~~p~lifv~srrqtrlta~~li~~~~~~~~p~~-fl~~de~e 1193 (1230)
T KOG0952|consen 1116 RPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTH-SPIKPVLIFVSSRRQTRLTALDLIASCATEDNPKQ-FLNMDELE 1193 (1230)
T ss_pred ccCCceEeecCCCchhcchhhhhcccHHHHHHhcC-CCCCceEEEeecccccccchHhHHhhccCCCCchh-ccCCCHHH
Confidence 99999999999999999999999999999999999 99999999999999999999999999999999999 99999999
Q ss_pred chhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHH
Q 000324 1616 VEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (1665)
Q Consensus 1616 l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v 1651 (1665)
++.++.+++|.+|+.++++||+.||+|+...||..+
T Consensus 1194 ~e~~~~~~~d~~Lk~tl~Fgi~lhhagl~~~dr~~~ 1229 (1230)
T KOG0952|consen 1194 LEIIMSKVRDTNLKLTLPFGIGLHHAGLIENDRKIV 1229 (1230)
T ss_pred HHHHHHHhcccchhhhhhhhhhhhhhhccccccccC
Confidence 999999999999999999999999999999999754
No 3
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=2e-90 Score=912.11 Aligned_cols=660 Identities=25% Similarity=0.366 Sum_probs=555.0
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEccc
Q 000324 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1665)
Q Consensus 482 Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (1665)
||+++...+ .||.+|+|+|++|++..+.+++|++++||||||||++|++++++.+.. +.++||++|+
T Consensus 8 lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~-----------~~kal~i~P~ 76 (737)
T PRK02362 8 LPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR-----------GGKALYIVPL 76 (737)
T ss_pred CCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc-----------CCcEEEEeCh
Confidence 688888888 589999999999999878788899999999999999999999998853 3489999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc-C
Q 000324 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (1665)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~ 638 (1665)
|+||.|++++|++ +..+|++|+.++|+..........++|+|||||+|+.++|+.. .+++.+++||+||+|++.+ .
T Consensus 77 raLa~q~~~~~~~-~~~~g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~--~~l~~v~lvViDE~H~l~d~~ 153 (737)
T PRK02362 77 RALASEKFEEFER-FEELGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGA--PWLDDITCVVVDEVHLIDSAN 153 (737)
T ss_pred HHHHHHHHHHHHH-hhcCCCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcCh--hhhhhcCEEEEECccccCCCc
Confidence 9999999999996 5566999999999988766666789999999999999999754 4788999999999999998 7
Q ss_pred CchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHH
Q 000324 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQL 718 (1665)
Q Consensus 639 rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~ 718 (1665)
||+.+|.+++++.+ ..+.+|+|+||||++|+++++.|++... |.+.+||+++...+..............
T Consensus 154 rg~~le~il~rl~~----~~~~~qii~lSATl~n~~~la~wl~~~~------~~~~~rpv~l~~~v~~~~~~~~~~~~~~ 223 (737)
T PRK02362 154 RGPTLEVTLAKLRR----LNPDLQVVALSATIGNADELADWLDAEL------VDSEWRPIDLREGVFYGGAIHFDDSQRE 223 (737)
T ss_pred chHHHHHHHHHHHh----cCCCCcEEEEcccCCCHHHHHHHhCCCc------ccCCCCCCCCeeeEecCCeecccccccc
Confidence 99999999998864 3567899999999999999999998652 6788999998765432111000000000
Q ss_pred HH----HHHHHHHHHH-hCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHh-------hhhcccc
Q 000324 719 MN----DLCYEKVVAV-AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQS-------HTDMVKS 786 (1665)
Q Consensus 719 ~~----~~~~~~i~~~-~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~-------~~~~~~~ 786 (1665)
+. ...+..+... ..++++||||+||+.|+.+|..|....... +. ......+.. ......+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~-----~~---~~~~~~~~~~~~~l~~~~~~~~~ 295 (737)
T PRK02362 224 VEVPSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKT-----LT---AAERAELAELAEEIREVSDTETS 295 (737)
T ss_pred CCCccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhc-----CC---HHHHHHHHHHHHHHHhccCcccc
Confidence 00 1122222222 247899999999999999999998764321 00 001111111 1122356
Q ss_pred chhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHh
Q 000324 787 NDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQ 866 (1665)
Q Consensus 787 ~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Q 866 (1665)
..|+.++..||++|||||++.+|..+++.|++|.++|||||++++||||+|+++|||++++.||+.. ++.+++..+|+|
T Consensus 296 ~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~-g~~~~s~~~y~Q 374 (737)
T PRK02362 296 KDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGA-GMQPIPVLEYHQ 374 (737)
T ss_pred HHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCC-CceeCCHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999876 578999999999
Q ss_pred hhcccCCCCCCCceEEEEEeCCC--cHHHHHHhh-cCCCccccchh--HhhHHHHHHHHHhccccChHHHHHHHHhhHHH
Q 000324 867 MLGRAGRPQYDSYGEGIIITGHS--ELRYYLSLM-NQQLPIESQFV--SKLADQLNAEIVLGTVQNAKEACNWIGYTYLY 941 (1665)
Q Consensus 867 r~GRAGR~g~d~~G~~iil~~~~--~~~~y~~ll-~~~~piES~l~--~~l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~ 941 (1665)
|+|||||+|+|..|.+++++... ..++|.+++ ..+.|+||+|. ..|.+++++||+.|++.+.+|+++|++|||+|
T Consensus 375 m~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~ 454 (737)
T PRK02362 375 MAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIWADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYA 454 (737)
T ss_pred HhhcCCCCCCCCCceEEEEecCchhHHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHH
Confidence 99999999999999999999875 345677777 58899999995 48999999999999999999999999999999
Q ss_pred HHhhcCCcccCCCccccccchhHHHHHHHHHHHHHHHHhHcCCcccccCCCccccChHHHHHHHhcCCHHHHHHHHHhcC
Q 000324 942 IRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLK 1021 (1665)
Q Consensus 942 ~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~ 1021 (1665)
++. ..++++.++|++++..|.++|||+.+ ++.+.+|++|+++|+|||+|.|+..|.+.|+
T Consensus 455 ~~~------------------~~~~~l~~~v~~~l~~L~~~~~i~~~--~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~ 514 (737)
T PRK02362 455 TQT------------------DDTGRLERVVDDVLDFLERNGMIEED--GETLEATELGHLVSRLYIDPLSAAEIIDGLE 514 (737)
T ss_pred hhc------------------cchHHHHHHHHHHHHHHHHCCCeeec--CCeEeEChHHHHHHHhcCCHHHHHHHHHHhh
Confidence 752 01346678999999999999999975 4679999999999999999999999999988
Q ss_pred CCC--CHHHHHHHhcCCccCCCCcCChhHHHHHHHHh--------ccCCCCCCCC-CCC--hHHHHHHHHHHHHcCCCCC
Q 000324 1022 PTM--GDIELCRLFSLSEEFKYVTVRQDEKMELAKLL--------DRVPIPVKES-LEE--PSAKINVLLQAYISQLKLE 1088 (1665)
Q Consensus 1022 ~~~--~~~~ll~~~s~s~Ef~~i~~R~~E~~~l~~l~--------~~~~~~~~~~-~~~--~~~K~~~Llqa~is~~~~~ 1088 (1665)
... +..++|.++|.++||..+++|++|...|.++. .++|.++.+. ++. ++.|+++|||+||++.+++
T Consensus 515 ~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~ll~~~i~~~~~~ 594 (737)
T PRK02362 515 AAKKPTDLGLLHLVCSTPDMYELYLRSGDYEWLNEYLYEHEDELLGDVPSEFEDDEFEDFLSAVKTALLLEDWIDEVDEE 594 (737)
T ss_pred hcccCchHHHHHHhhcCccccccccChhHHHHHHHHHHhcccchhccCCchhhhhhHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 764 78999999999999999999999999998875 5566655432 233 7899999999999999963
Q ss_pred ----CCcc-hhhHHHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHcccCCCCCcccccCCCCHHHHHHHHhCCC
Q 000324 1089 ----GLSL-TSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF 1163 (1665)
Q Consensus 1089 ----~~~l-~~D~~~i~~~a~rl~~a~~ei~~~~g~~~~a~~~l~L~k~i~~~~W~~~~pL~Q~~~i~~~~~~~l~~~~~ 1163 (1665)
.|.+ .+|+..++++|.||++|+++||... |..++..+++|++||.+++|++.+||.|+||++++++++|++.|+
T Consensus 595 ~i~~~~~~~~gdl~~~~~~~~~l~~a~~~i~~~~-~~~~~~~~~~l~~~l~~gv~~~~~~L~~ip~i~~~~a~~l~~~gi 673 (737)
T PRK02362 595 RITERYGVGPGDIRGKVETAEWLLHAAERLASEL-DLDLARAARELEKRVEYGVREELLDLVGLRGVGRVRARRLYNAGI 673 (737)
T ss_pred HHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHhCCCHHHHHHhCCCCCCHHHHHHHHHcCC
Confidence 5667 5899999999999999999998764 557799999999999999999999999999999999999999999
Q ss_pred -CchhhccCChHHHhhhhcCchhhHHHHHHHhcC
Q 000324 1164 -AWERYYDLSPQELGELIRFPKMGRTLHKFVHQF 1196 (1665)
Q Consensus 1164 -~~~~l~~l~~~el~~ll~~~~~~~~i~~~~~~~ 1196 (1665)
+++++..++++++..+++ ++.++.|++.+..+
T Consensus 674 ~s~~dl~~~~~~~l~~~~g-~~~~~~i~~~~~~~ 706 (737)
T PRK02362 674 ESRADLRAADKSVVLAILG-EKIAENILEQAGRR 706 (737)
T ss_pred CCHHHHHhCCHHHHHHHHC-HHHHHHHHHHhCcc
Confidence 889999999999999977 67788888877743
No 4
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=2e-86 Score=872.18 Aligned_cols=658 Identities=27% Similarity=0.384 Sum_probs=537.7
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEccc
Q 000324 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1665)
Q Consensus 482 Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (1665)
+|+.+...+ .||++|||+|.++++..+.+++|++++||||||||++|++|+++.+... +.++|||+|+
T Consensus 8 l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~----------~~~~l~l~P~ 77 (720)
T PRK00254 8 VDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE----------GGKAVYLVPL 77 (720)
T ss_pred CCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc----------CCeEEEEeCh
Confidence 577777777 6899999999999998777788999999999999999999999987642 3589999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc-C
Q 000324 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (1665)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~ 638 (1665)
++||.|++++|.. +..+|++|..++|+..........++|+|+|||+|+.++++.. .+++++++||+||+|++.+ .
T Consensus 78 ~aLa~q~~~~~~~-~~~~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~--~~l~~l~lvViDE~H~l~~~~ 154 (720)
T PRK00254 78 KALAEEKYREFKD-WEKLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGS--SWIKDVKLVVADEIHLIGSYD 154 (720)
T ss_pred HHHHHHHHHHHHH-HhhcCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCc--hhhhcCCEEEEcCcCccCCcc
Confidence 9999999999987 4567999999999988766666789999999999999988654 4788999999999999987 6
Q ss_pred CchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEE--ee---ecCchh
Q 000324 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI--GI---QVKKPL 713 (1665)
Q Consensus 639 rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~--~~---~~~~~~ 713 (1665)
||+.++.+++++ ...+|+|+||||++|+.+++.|++... +.+.+||+++..... +. ......
T Consensus 155 rg~~le~il~~l-------~~~~qiI~lSATl~n~~~la~wl~~~~------~~~~~rpv~l~~~~~~~~~~~~~~~~~~ 221 (720)
T PRK00254 155 RGATLEMILTHM-------LGRAQILGLSATVGNAEELAEWLNAEL------VVSDWRPVKLRKGVFYQGFLFWEDGKIE 221 (720)
T ss_pred chHHHHHHHHhc-------CcCCcEEEEEccCCCHHHHHHHhCCcc------ccCCCCCCcceeeEecCCeeeccCcchh
Confidence 999999998875 356899999999999999999998752 567889999864322 11 111111
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCc-h-hHHHHHhhhhccccchhhh
Q 000324 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDS-V-SREILQSHTDMVKSNDLKD 791 (1665)
Q Consensus 714 ~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~-~-~~~~l~~~~~~~~~~~l~~ 791 (1665)
.....+...+++.+. .++++||||+||+.|+.+|..|...... ++.... . -.+..........+..|++
T Consensus 222 ~~~~~~~~~~~~~i~---~~~~vLVF~~sr~~~~~~a~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 292 (720)
T PRK00254 222 RFPNSWESLVYDAVK---KGKGALVFVNTRRSAEKEALELAKKIKR------FLTKPELRALKELADSLEENPTNEKLKK 292 (720)
T ss_pred cchHHHHHHHHHHHH---hCCCEEEEEcChHHHHHHHHHHHHHHHH------hcCchhHHHHHHHHHHHhcCCCcHHHHH
Confidence 111334445555443 3679999999999999999998765321 111100 0 0111111122345678999
Q ss_pred hcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhccc
Q 000324 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871 (1665)
Q Consensus 792 ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRA 871 (1665)
++.+||++|||||++++|..+++.|++|.++|||||++++||||+|+++|||++++.|+. .++.++++.+|+||+|||
T Consensus 293 ~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~--~~~~~~~~~~~~Qm~GRA 370 (720)
T PRK00254 293 ALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSN--FGWEDIPVLEIQQMMGRA 370 (720)
T ss_pred HHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCC--CCceeCCHHHHHHhhhcc
Confidence 999999999999999999999999999999999999999999999999999999999972 357889999999999999
Q ss_pred CCCCCCCceEEEEEeCCCc-HHHHHHhh-cCCCccccchh--HhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcC
Q 000324 872 GRPQYDSYGEGIIITGHSE-LRYYLSLM-NQQLPIESQFV--SKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRN 947 (1665)
Q Consensus 872 GR~g~d~~G~~iil~~~~~-~~~y~~ll-~~~~piES~l~--~~l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~~r~~~n 947 (1665)
||+|+|..|.++++++..+ .++|.+++ ..+.++.|.+. +.|.++++++|+.|++.+.+|+++||++||+|+ +|
T Consensus 371 GR~~~d~~G~~ii~~~~~~~~~~~~~~~~~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~---~~ 447 (720)
T PRK00254 371 GRPKYDEVGEAIIVATTEEPSKLMERYIFGKPEKLFSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAH---QR 447 (720)
T ss_pred CCCCcCCCceEEEEecCcchHHHHHHHHhCCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHH---hh
Confidence 9999999999999998765 45566663 23334445443 356899999999999999999999999999995 46
Q ss_pred CcccCCCccccccchhHHHHHHHHHHHHHHHHhHcCCcccccCCCccccChHHHHHHHhcCCHHHHHHHHHhcCC---CC
Q 000324 948 PALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKP---TM 1024 (1665)
Q Consensus 948 p~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~---~~ 1024 (1665)
|.+|++ .+++++++..|.+++||+.++ ++.+.+|++|+++|+|||+|.|+..|.+.++. .+
T Consensus 448 ~~~~~~---------------~~~v~~~l~~L~~~~~i~~~~-~~~~~~t~lG~~~s~~~i~~~t~~~~~~~l~~~~~~~ 511 (720)
T PRK00254 448 KDLYSL---------------EEKAKEIVYFLLENEFIDIDL-EDRFIPLPLGIRTSQLYIDPLTAKKFKDAFPKIEKNP 511 (720)
T ss_pred cChHhH---------------HHHHHHHHHHHHHCCCeEEcC-CCCEeeChHHHHHHHHhCCHHHHHHHHHHHHhhccCC
Confidence 766642 246888999999999999864 46799999999999999999999999998876 67
Q ss_pred CHHHHHHHhcCCccCCCCcCChhHHHHHH--------HHhccCCCCCCCCCCC--hHHHHHHHHHHHHcCCCCC----CC
Q 000324 1025 GDIELCRLFSLSEEFKYVTVRQDEKMELA--------KLLDRVPIPVKESLEE--PSAKINVLLQAYISQLKLE----GL 1090 (1665)
Q Consensus 1025 ~~~~ll~~~s~s~Ef~~i~~R~~E~~~l~--------~l~~~~~~~~~~~~~~--~~~K~~~Llqa~is~~~~~----~~ 1090 (1665)
++.++|+++|.++||..+++|++|...|. +|..++|.+.....+. ++.|+++|||+|||+.+++ .|
T Consensus 512 ~~~~~l~~~~~~~e~~~~~~r~~e~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~~~~~~ 591 (720)
T PRK00254 512 NPLGIFQLIASTPDMTPLNYSRKEMEDLLDEAYEMEDRLYFNIPYWEDYKFQKFLRAFKTAKVLLDWINEVPEGEIVETY 591 (720)
T ss_pred CHHHHHHHhhCCccccccCcchhhHHHHHHHHHhhcccccccCCcchhhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHh
Confidence 88999999999999999999999998888 3434444432222333 7899999999999999874 23
Q ss_pred cc-hhhHHHHHHhHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHcccCCCCCcccccCCCCHHHHHHHHhCCC-Cchh
Q 000324 1091 SL-TSDMVFITQSAGRLLRALFEIVLKRGWA-QLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF-AWER 1167 (1665)
Q Consensus 1091 ~l-~~D~~~i~~~a~rl~~a~~ei~~~~g~~-~~a~~~l~L~k~i~~~~W~~~~pL~Q~~~i~~~~~~~l~~~~~-~~~~ 1167 (1665)
.. .+|+..++++|.||++|+++||...||. .....+.+|++||+||+|++++||.|+||+|++++++|.++|+ ++.+
T Consensus 592 ~~~~gd~~~~~~~~~~l~~a~~~i~~~~~~~~~~~~~l~~l~~rl~~g~~~~~~~L~~ipgig~~~~~~l~~~g~~s~~~ 671 (720)
T PRK00254 592 NIDPGDLYRILELADWLMYSLIELYKLFEPKQEVLDYLETLHLRVKHGVREELLELMRLPMIGRKRARALYNAGFRSIED 671 (720)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHcCCCHHHhhhhcCCCCCHHHHHHHHHccCCCHHH
Confidence 33 4899999999999999999999977763 3334445899999999999999999999999999999999999 8999
Q ss_pred hccCChHHHhhhhcC-chhhHHHHHHHhc
Q 000324 1168 YYDLSPQELGELIRF-PKMGRTLHKFVHQ 1195 (1665)
Q Consensus 1168 l~~l~~~el~~ll~~-~~~~~~i~~~~~~ 1195 (1665)
+..+++++|..+.+. ++.++.|++.++.
T Consensus 672 i~~a~~~el~~~~gi~~~~a~~i~~~~~~ 700 (720)
T PRK00254 672 IVNAKPSELLKVEGIGAKIVEGIFKHLGV 700 (720)
T ss_pred HHhCCHHHHhcCCCCCHHHHHHHHHHhcc
Confidence 999999999998543 5778888888773
No 5
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=8.8e-87 Score=852.83 Aligned_cols=738 Identities=34% Similarity=0.466 Sum_probs=613.4
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEccc
Q 000324 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1665)
Q Consensus 482 Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (1665)
+++.+...+ .++.++++.|+.++...+.+++|+|||||||||||++|+++|++.+..+ ++++|||||+
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~----------~~k~vYivPl 85 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG----------GGKVVYIVPL 85 (766)
T ss_pred ccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc----------CCcEEEEeCh
Confidence 345555555 4555556555555555555689999999999999999999999999874 4689999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccC-
Q 000324 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDN- 638 (1665)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~- 638 (1665)
||||.|++++|+ ++..+|++|++.|||.......+.+++|||+||||||+++|+... ++..|++|||||+|+++|.
T Consensus 86 kALa~Ek~~~~~-~~~~~GirV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~--~~~~V~lvViDEiH~l~d~~ 162 (766)
T COG1204 86 KALAEEKYEEFS-RLEELGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPS--WIEEVDLVVIDEIHLLGDRT 162 (766)
T ss_pred HHHHHHHHHHhh-hHHhcCCEEEEecCCcccchhhhccCCEEEEchHHhhHhhhcCcc--hhhcccEEEEeeeeecCCcc
Confidence 999999999999 788999999999999999999999999999999999999999884 8999999999999999996
Q ss_pred CchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHH
Q 000324 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQL 718 (1665)
Q Consensus 639 rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~ 718 (1665)
|||++|.+++++++. ...+||||||||+||+.++|.||++++....+++.+.+|+++..+.+.+...... ..-..
T Consensus 163 RG~~lE~iv~r~~~~----~~~~rivgLSATlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k-~~~~~ 237 (766)
T COG1204 163 RGPVLESIVARMRRL----NELIRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKK-TWPLL 237 (766)
T ss_pred cCceehhHHHHHHhh----CcceEEEEEeeecCCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccc-ccccc
Confidence 999999999999763 3459999999999999999999999987788999999999999999988775543 11222
Q ss_pred HHHHHHHHHHHHhC-CCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcE
Q 000324 719 MNDLCYEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGF 797 (1665)
Q Consensus 719 ~~~~~~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv 797 (1665)
....++..+..... ++|+|||||||+.+..+|+.++........-................+.....+..|+++++.|+
T Consensus 238 ~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~Gv 317 (766)
T COG1204 238 IDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGV 317 (766)
T ss_pred chHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCc
Confidence 23344555555444 78999999999999999999996433222111111111111122223334455689999999999
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCC
Q 000324 798 AIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD 877 (1665)
Q Consensus 798 ~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d 877 (1665)
++|||||++++|..+++.|+.|.++|||||+|||||||+|+.+|||+++..|++.. +++++++.|++||+|||||||+|
T Consensus 318 afHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~-g~~~i~~~dv~QM~GRAGRPg~d 396 (766)
T COG1204 318 AFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKG-GIVDIPVLDVLQMAGRAGRPGYD 396 (766)
T ss_pred cccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCC-CeEECchhhHhhccCcCCCCCcC
Confidence 99999999999999999999999999999999999999999999999999999954 49999999999999999999999
Q ss_pred CceEEEEEe-CCCcHHHHHHhhcCCCccccchhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCcc
Q 000324 878 SYGEGIIIT-GHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPE 956 (1665)
Q Consensus 878 ~~G~~iil~-~~~~~~~y~~ll~~~~piES~l~~~l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~ 956 (1665)
..|.+++++ +..+..++.+...++.|.+ +.+.|.+..+++..++++.+..++++|+.+||+|.|++.||.+|+...
T Consensus 397 ~~G~~~i~~~~~~~~~~~~~~~~~~~~e~--~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~~~- 473 (766)
T COG1204 397 DYGEAIILATSHDELEYLAELYIQSEPEP--IESKLGDELNLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGEGM- 473 (766)
T ss_pred CCCcEEEEecCccchhHHHHHhhccCcch--HHHhhcccccchheEEEEEeccchhhHHHHHHHHHHHHhhhhhccccc-
Confidence 999999999 5566677777777766655 666666667999999999999999999999999999999999887621
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhHcCCcccccCCCccccChHHHHHHHhcCCHHHHHHHHHhcCCCC---CHHHHHHHh
Q 000324 957 VLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTM---GDIELCRLF 1033 (1665)
Q Consensus 957 ~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~---~~~~ll~~~ 1033 (1665)
..+.+..++..|.+++++ .+.....+.+|++|+.+|+|||+|.|++.|.+.+.... +..+++..+
T Consensus 474 -----------~~~~i~~~~~~L~~~~~~-~~~~~~~~~ate~g~~~s~~yi~~~sa~~~~~~l~~~~~~~~~~~~l~~i 541 (766)
T COG1204 474 -----------LREEILASLRYLEENGLI-LDADWEALHATELGKLVSRLYIDPESAKIFRDLLAELALEPTEIGLLYLI 541 (766)
T ss_pred -----------hHHHHHHHHHHHHhccce-eeccccccchhHHHHHhhhccCCHHHHHHHHHHHHHhccccchHHHhhhh
Confidence 225678899999998722 23345789999999999999999999999998876654 889999999
Q ss_pred cCCccCCCCcCChhHHHHH--HHHhccCCCCCCCCCCChHHHHHHHHHHHHcCCCCCCCcchhhHHHHHHhHHHHHHHHH
Q 000324 1034 SLSEEFKYVTVRQDEKMEL--AKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALF 1111 (1665)
Q Consensus 1034 s~s~Ef~~i~~R~~E~~~l--~~l~~~~~~~~~~~~~~~~~K~~~Llqa~is~~~~~~~~l~~D~~~i~~~a~rl~~a~~ 1111 (1665)
|.++||..+++|.++..++ ..+.+..++...+....+..|.+.++|++.+...+.++....|..+|.++..+...+++
T Consensus 542 s~~pd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~wi~~~~~~~i~~~~~~~~~dl~ 621 (766)
T COG1204 542 SLTPDLMPIKLRERESSELVLDELEEQSDYLLGERLDELAVEYNLLLQALKTAARLLDWINEADEDEILNAYGVAPGDLL 621 (766)
T ss_pred hcCccchhhhhhhhhhhhhhHHHHHhcchHHhhccccccchhhHHHHHHHHHHHHHHHHHHhCcHHHHHHHhCcchhhHH
Confidence 9999999999999999885 55566677777777778889999999999999999889999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHcccCCCCCcccccCCCCHHHHHHHHhCCCCchhhccCChHHHhhhhcCchhhHHHHH
Q 000324 1112 EIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHK 1191 (1665)
Q Consensus 1112 ei~~~~g~~~~a~~~l~L~k~i~~~~W~~~~pL~Q~~~i~~~~~~~l~~~~~~~~~l~~l~~~el~~ll~~~~~~~~i~~ 1191 (1665)
.++....|. .+. ++.|++++.+..|....++.|+ .+...+..+++ .|+.-+++.++..-+-...++..+..+..++
T Consensus 622 ~~~~~a~w~-~~~-~~~l~~~~~r~~~~~~~~~~~~-~~~~~~~~rie-~gv~~e~~~~l~~i~~~grvrar~ly~~g~~ 697 (766)
T COG1204 622 RIAETAEWL-SAD-LLALGKAAERLAKILGLGLHVL-RKLEILSLRIE-YGVRSEELLELVEIRGVGRVRARKLYNAGYK 697 (766)
T ss_pred hhcchhhhh-hhh-hhhhhhhhhhhHhhhCCCcccc-ccchhhhhhhh-cCCChhhhcccccccccchhHHHHHHHhhhc
Confidence 999999999 555 9999999999999999999999 77777666665 4442256666543332222555667777788
Q ss_pred HHhcCCcceEEEEEeeccCceEEEEEEEccCCccCCCCCCCcccEEEEEEeCCCCeEEEEeeeeee
Q 000324 1192 FVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLK 1257 (1665)
Q Consensus 1192 ~~~~~P~l~l~~~v~pit~~~l~v~l~i~~~~~w~~~~h~~~e~~wi~v~d~~~~~il~~~~~~l~ 1257 (1665)
.++.+|.......+.|+++...++.-.|.+.+.|....|+..+.||..+.+.+...++|.+.+.+.
T Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (766)
T COG1204 698 SLEDLRLIADPAELLPLTGIGERLVEAILESLGRDVLLSGRAYFFSIEVRELDLLYVLHEEALILA 763 (766)
T ss_pred cHHHHHhhcChhhhhhhhhhHHHHHHHHHHHhhhhhhcccchhhhcccCccccccceecchhhccC
Confidence 888888777777788887776777777788899999999999999999999999999998877654
No 6
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=4.4e-82 Score=828.34 Aligned_cols=643 Identities=24% Similarity=0.350 Sum_probs=533.6
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEccc
Q 000324 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1665)
Q Consensus 482 Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (1665)
||+.+.+.+ .+|+ |+++|.++++.+ .+++|++++||||||||++|++++++.+.. +.++||++|+
T Consensus 8 l~~~~~~~~~~~~~~-l~~~Q~~ai~~l-~~~~nvlv~apTGSGKTl~a~lail~~l~~-----------~~k~v~i~P~ 74 (674)
T PRK01172 8 YDDEFLNLFTGNDFE-LYDHQRMAIEQL-RKGENVIVSVPTAAGKTLIAYSAIYETFLA-----------GLKSIYIVPL 74 (674)
T ss_pred CCHHHHHHHhhCCCC-CCHHHHHHHHHH-hcCCcEEEECCCCchHHHHHHHHHHHHHHh-----------CCcEEEEech
Confidence 677777777 4565 999999999986 556789999999999999999999988754 3479999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc-C
Q 000324 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (1665)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~ 638 (1665)
++||.|++++|++ +...|++|...+|+..........++|+|+|||+|+.+.+++. .+++++++||+||+|++.+ .
T Consensus 75 raLa~q~~~~~~~-l~~~g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~--~~l~~v~lvViDEaH~l~d~~ 151 (674)
T PRK01172 75 RSLAMEKYEELSR-LRSLGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDP--YIINDVGLIVADEIHIIGDED 151 (674)
T ss_pred HHHHHHHHHHHHH-HhhcCCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCCh--hHHhhcCEEEEecchhccCCC
Confidence 9999999999987 4567899999999987766666789999999999999998865 5688999999999999987 6
Q ss_pred CchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCc--hhHHH
Q 000324 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKK--PLQRF 716 (1665)
Q Consensus 639 rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~--~~~~~ 716 (1665)
||+.++.+++++.. ..++.|+|+||||++|..++++|++... +...+||+|+...+....... ...+.
T Consensus 152 rg~~le~ll~~~~~----~~~~~riI~lSATl~n~~~la~wl~~~~------~~~~~r~vpl~~~i~~~~~~~~~~~~~~ 221 (674)
T PRK01172 152 RGPTLETVLSSARY----VNPDARILALSATVSNANELAQWLNASL------IKSNFRPVPLKLGILYRKRLILDGYERS 221 (674)
T ss_pred ccHHHHHHHHHHHh----cCcCCcEEEEeCccCCHHHHHHHhCCCc------cCCCCCCCCeEEEEEecCeeeecccccc
Confidence 99999999887643 3567999999999999999999998652 667889999886544221100 00000
Q ss_pred HHHHHHHHHHHHH-HhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCC
Q 000324 717 QLMNDLCYEKVVA-VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPY 795 (1665)
Q Consensus 717 ~~~~~~~~~~i~~-~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~ 795 (1665)
.. .+...+.. ...++++||||+||+.|+.+|..|.......... . .........+..|++++++
T Consensus 222 ~~---~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~---~---------~~~~~~~~~~~~L~~~l~~ 286 (674)
T PRK01172 222 QV---DINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDF---K---------VSSENNNVYDDSLNEMLPH 286 (674)
T ss_pred cc---cHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccc---c---------ccccccccccHHHHHHHhc
Confidence 00 01122222 2347899999999999999999998764322111 0 0011123346788999999
Q ss_pred cEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCC
Q 000324 796 GFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQ 875 (1665)
Q Consensus 796 gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g 875 (1665)
||++|||||++++|..+++.|++|.++|||||++++||||+|++.|||.++..|+.. ...++|+.+|.||+|||||+|
T Consensus 287 gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~~~~~~~~~--~~~~~s~~~~~Qm~GRAGR~g 364 (674)
T PRK01172 287 GVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVRDITRYGNG--GIRYLSNMEIKQMIGRAGRPG 364 (674)
T ss_pred CEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEcCceEeCCC--CceeCCHHHHHHHhhcCCCCC
Confidence 999999999999999999999999999999999999999999999999998888754 246799999999999999999
Q ss_pred CCCceEEEEEeCCCc-HHHHHHhh-cCCCccccchhHh--hHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCccc
Q 000324 876 YDSYGEGIIITGHSE-LRYYLSLM-NQQLPIESQFVSK--LADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALY 951 (1665)
Q Consensus 876 ~d~~G~~iil~~~~~-~~~y~~ll-~~~~piES~l~~~--l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~~r~~~np~~y 951 (1665)
+|..|.|++++...+ .++|.+++ +.+.|+||+|... +..+++++|+.|.+.+.+|+++|++|||+|++ |+
T Consensus 365 ~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~---~~--- 438 (674)
T PRK01172 365 YDQYGIGYIYAASPASYDAAKKYLSGEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQ---NG--- 438 (674)
T ss_pred CCCcceEEEEecCcccHHHHHHHHcCCCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhc---Cc---
Confidence 999999999987654 67888887 7899999999865 44455699999999999999999999999973 21
Q ss_pred CCCccccccchhHHHHHHHHHHHHHHHHhHcCCcccccCCCccccChHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHH
Q 000324 952 GLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCR 1031 (1665)
Q Consensus 952 ~~~~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~ll~ 1031 (1665)
.+++.++|++|+..|.++|||+.+ +.+.+|++|+++|+|||+|.|+..|.+.++..++..++|.
T Consensus 439 -------------~~~l~~~v~~~l~~L~~~~~i~~~---~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~l~ 502 (674)
T PRK01172 439 -------------VDEIDYYIESSLKFLKENGFIKGD---VTLRATRLGKLTSDLYIDPESALILKSAFDHDYDEDLALY 502 (674)
T ss_pred -------------hHHHHHHHHHHHHHHHHCCCcccC---CcEeECHHHHHHHHhCCCHHHHHHHHHHhhccCCHHHHHH
Confidence 124568899999999999999743 5589999999999999999999999999999999999999
Q ss_pred HhcCCccCCCCcCChhHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHcCCCCC----CCcch-hhHHHHHHhHHHH
Q 000324 1032 LFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLE----GLSLT-SDMVFITQSAGRL 1106 (1665)
Q Consensus 1032 ~~s~s~Ef~~i~~R~~E~~~l~~l~~~~~~~~~~~~~~~~~K~~~Llqa~is~~~~~----~~~l~-~D~~~i~~~a~rl 1106 (1665)
++|.++|| +|+|..|...+.++.+.+|. .....++.|+++|||+||||.+++ .|... +|+..+++++.|+
T Consensus 503 ~~~~~~e~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~k~~~ll~~~~~~~~~~~i~~~~~~~~g~l~~~~~~~~~~ 577 (674)
T PRK01172 503 YISLCREI--IPANTRDDYYAMEFLEDIGV---IDGDISAAKTAMVLRGWISEASMQKITDTYGIAPGDVQARASSADWI 577 (674)
T ss_pred HhhcCccc--cccccchHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 99999999 89999888888888888764 234468999999999999999973 34454 7999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHcccCCCCCcccccCCCCHHHHHHHHhCCC-CchhhccCChHHHhhhhcCc-h
Q 000324 1107 LRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIRFP-K 1184 (1665)
Q Consensus 1107 ~~a~~ei~~~~g~~~~a~~~l~L~k~i~~~~W~~~~pL~Q~~~i~~~~~~~l~~~~~-~~~~l~~l~~~el~~ll~~~-~ 1184 (1665)
.+|+..+|.. +|..++..+-.|.++|.||+|++.+||.|+|||++.++++|.++|+ ++.++.+++++++.+++++. +
T Consensus 578 ~~a~~~~~~~-~~~~~~~~l~~~~~rl~~gv~~~~~~L~~ip~~~~~~a~~l~~~g~~~~~di~~~~~~~~~~i~~~~~~ 656 (674)
T PRK01172 578 SYSLARLSSI-YKPEMRRKLEILNIRIKEGIREDLIDLVLIPKVGRVRARRLYDAGFKTVDDIARSSPERIKKIYGFSDT 656 (674)
T ss_pred HHHHHHHHHH-hhHHHHHHHHHHHHHHHcCCCHHHHhhcCCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHhccCHH
Confidence 9999999875 4566666677788889999999999999999999999999999999 89999999999999998764 4
Q ss_pred hhHHHHHHHhc
Q 000324 1185 MGRTLHKFVHQ 1195 (1665)
Q Consensus 1185 ~~~~i~~~~~~ 1195 (1665)
..+.|.+.++.
T Consensus 657 ~~~~i~~~~~~ 667 (674)
T PRK01172 657 LANAIVNRAMK 667 (674)
T ss_pred HHHHHHHHHHH
Confidence 55666665544
No 7
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=7.2e-63 Score=607.81 Aligned_cols=491 Identities=29% Similarity=0.533 Sum_probs=440.7
Q ss_pred ccCCCC-hhhHhhcCCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEE
Q 000324 478 KISEMP-EWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYV 556 (1665)
Q Consensus 478 ~i~~Lp-~~~~~~f~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~i 556 (1665)
|++.|. +.+...|.. +||+|+++|+..+++++|++|+||+|||||.|+.+++++ +. ...+++||
T Consensus 1128 ~~~~l~N~~~~~lf~~---~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-----~~-------~~~~~vyi 1192 (1674)
T KOG0951|consen 1128 PVSALRNPSFETLFQD---FNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-----PD-------TIGRAVYI 1192 (1674)
T ss_pred chhccCCcchhhhccc---cCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-----Cc-------cceEEEEe
Confidence 566664 445555543 499999999999999999999999999999999999987 11 35589999
Q ss_pred cccHHHHHHHHHHHHHhhcc-CCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccc
Q 000324 557 APMKALVAEVVGNLSNRLQM-YDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (1665)
Q Consensus 557 aP~raLa~q~~~~~~~~~~~-~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l 635 (1665)
+|+-+.+..+++.|.++++. .|..+..++|+.+.+.......+|+|+|||+||.+. ..+.+++.|.||.|++
T Consensus 1193 ~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~lkl~~~~~vii~tpe~~d~lq-------~iQ~v~l~i~d~lh~i 1265 (1674)
T KOG0951|consen 1193 APLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDLKLLQKGQVIISTPEQWDLLQ-------SIQQVDLFIVDELHLI 1265 (1674)
T ss_pred cchHHHHHHHHHHHHHhhccccCceEEecCCccccchHHhhhcceEEechhHHHHHh-------hhhhcceEeeehhhhh
Confidence 99999999999999999875 589999999999999999999999999999999882 5788999999999999
Q ss_pred ccCCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHH
Q 000324 636 HDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQR 715 (1665)
Q Consensus 636 ~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~ 715 (1665)
++..|+++|.|++ ++.+..+..+++|+|++|..+.|+.|+ ++.. ..++|+|.++.||+|+..++.++.......+
T Consensus 1266 gg~~g~v~evi~S-~r~ia~q~~k~ir~v~ls~~lana~d~---ig~s-~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~ 1340 (1674)
T KOG0951|consen 1266 GGVYGAVYEVICS-MRYIASQLEKKIRVVALSSSLANARDL---IGAS-SSGVFNFSPSVRPVPLEIHIQSVDISHFESR 1340 (1674)
T ss_pred cccCCceEEEEee-HHHHHHHHHhheeEEEeehhhccchhh---cccc-ccceeecCcccCCCceeEEEEEeccchhHHH
Confidence 9889999999999 888888899999999999999999888 7766 4789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcC
Q 000324 716 FQLMNDLCYEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLP 794 (1665)
Q Consensus 716 ~~~~~~~~~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~ 794 (1665)
+.+|.+..|..+..+.+ +++.+||+++|+.|..+|..+....... ....+-.+.+. .+..|++.++
T Consensus 1341 ~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~------------~~~~l~~~~e~-~~~~l~e~l~ 1407 (1674)
T KOG0951|consen 1341 MLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHAD------------EPDYLLSELEE-CDETLRESLK 1407 (1674)
T ss_pred HHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccC------------cHHHHHHHHhc-chHhhhhccc
Confidence 99999999999988877 7799999999999999998887664332 11222222222 5778999999
Q ss_pred CcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCC
Q 000324 795 YGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRP 874 (1665)
Q Consensus 795 ~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~ 874 (1665)
+||+ |-||+..|...+-.+|..|.|+|+|...- .||+-..++.||+.||++||...+.+.+|++++++||+|+|.|
T Consensus 1408 ~gvg--~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~- 1483 (1674)
T KOG0951|consen 1408 HGVG--HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG- 1483 (1674)
T ss_pred cccc--ccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcC-
Confidence 9999 99999999999999999999999999888 9999999999999999999999999999999999999999998
Q ss_pred CCCCceEEEEEeCCCcHHHHHHhhcCCCccccchhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCC
Q 000324 875 QYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLA 954 (1665)
Q Consensus 875 g~d~~G~~iil~~~~~~~~y~~ll~~~~piES~l~~~l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~ 954 (1665)
.|.|+++|...+..||++|+.+++|+||++...|+|++|+||+.++|.|.+||++||+|||+|+|+..||+||++.
T Consensus 1484 ----~~k~vi~~~~~~k~yykkfl~e~lPves~lq~~lhd~~n~ei~~~tienkqd~vd~lt~s~~yrr~~~np~yy~l~ 1559 (1674)
T KOG0951|consen 1484 ----AGKCVIMCHTPKKEYYKKFLYEPLPVESHLQHCLHDNFNAEIVTKTIENKQDAVDYLTWSFMYRRLPQNPNYYNLQ 1559 (1674)
T ss_pred ----CccEEEEecCchHHHHHHhccCcCchHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccccCcceeccc
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHhHcCCcccccCCCccccChHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 000324 955 PEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTM 1024 (1665)
Q Consensus 955 ~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~ 1024 (1665)
+. +..+++.++++++++++..|+...||+.+..+. -+|.|+|+|||+|-|+..|...++...
T Consensus 1560 ~v---~~~~~S~~lS~lvet~l~dl~~s~~i~v~dad~-----~l~~Ias~y~i~y~ti~~f~~~L~~~t 1621 (1674)
T KOG0951|consen 1560 GV---SHRHLSDFLSELVETTLNDLEESKCIEVDDEDD-----SLGMIASYYYISYITIERFSSSLSEKT 1621 (1674)
T ss_pred cc---chhhhhhHHHHHHHHHHHHhhcCceEEeecccc-----ccchhhhhceeeeEeeehhhhhhhhhh
Confidence 84 567899999999999999999999999876544 299999999999999998876665443
No 8
>smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins.
Probab=100.00 E-value=6.1e-53 Score=504.78 Aligned_cols=308 Identities=45% Similarity=0.765 Sum_probs=294.1
Q ss_pred cccChHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHhcCCccCCCCcCChhHHHHHHHHhccCCCCCC-CCCCChHH
Q 000324 994 FQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVK-ESLEEPSA 1072 (1665)
Q Consensus 994 ~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~~s~s~Ef~~i~~R~~E~~~l~~l~~~~~~~~~-~~~~~~~~ 1072 (1665)
+.+|++|++||+|||++.||+.|+..+++.++..++|.++|.|+||.++++|++|+.+|.+|.+.+|++++ ...+.++.
T Consensus 2 ~~~T~~Grias~yYI~~~T~~~f~~~l~~~~~~~~lL~~ls~a~Ef~~i~vR~~E~~~l~~l~~~~~~~~~~~~~~~~~~ 81 (312)
T smart00611 2 IWPTDLGRIASYYYISYTTIRTFNELLKPKMTTKDLLRILSMSSEFDQIPVRHEEDLLLEELAEKLPIRLENPSLDDPHV 81 (312)
T ss_pred cccchhHHHHhhhccChHHHHHHHHhcCCCCCHHHHHHHHhCcHhhCCCCCCccHHHHHHHHHHhCCcCcCCCCCCCchH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999877 45788999
Q ss_pred HHHHHHHHHHcCCCCCCCcchhhHHHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHcccCCCCCcccccCCCCH
Q 000324 1073 KINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPN 1152 (1665)
Q Consensus 1073 K~~~Llqa~is~~~~~~~~l~~D~~~i~~~a~rl~~a~~ei~~~~g~~~~a~~~l~L~k~i~~~~W~~~~pL~Q~~~i~~ 1152 (1665)
|+++||||||+|++++.++|.+|+.+|+++|.||++||+|||..+||+..+.++++|+|||+||+|++++||+||||+++
T Consensus 82 K~~lLLqa~i~r~~l~~~~l~~D~~~vl~~a~rll~al~di~~~~~~~~~~~~~l~L~q~i~q~~w~~~~~L~Qlp~i~~ 161 (312)
T smart00611 82 KANLLLQAHLSRLKLPSFALESDTVYVLQNAGRLLQAMVDIALERGWLSTALNALNLSQMIIQALWPTDSPLLQLPHLPE 161 (312)
T ss_pred HHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhCCCCCccccCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC-CchhhccCChHHHhhhhcCc-hhhHHHHHHHhcCCcceEEEEEeeccCceEEEEEEEccCCccCCCCC
Q 000324 1153 EILMKLEKKDF-AWERYYDLSPQELGELIRFP-KMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVH 1230 (1665)
Q Consensus 1153 ~~~~~l~~~~~-~~~~l~~l~~~el~~ll~~~-~~~~~i~~~~~~~P~l~l~~~v~pit~~~l~v~l~i~~~~~w~~~~h 1230 (1665)
+.+++|+++|+ +++++.++++++++.+++++ +.+++++++++.||+++|+++++|+++...++.++++++|.|+..+|
T Consensus 162 ~~~~~l~~~~i~s~~~l~~~~~~~~~~ll~~~~~~~~~i~~~~~~~P~l~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 241 (312)
T smart00611 162 EILKRLEKKKVLSLEDLLELEDEERGELLGLLDAEGERVYKVLSRLPKLNIEISLEPITRTVLGVEVTLTVDLTWDDEIH 241 (312)
T ss_pred HHHHHHHhCCCCCHHHHHhcCHHHHHHHHcCCHHHHHHHHHHHHhCCcceeEEEEcCCcccccCceEEEEEEEEEccccc
Confidence 99999999996 89999999999999999876 88999999999999999999999999999999999999999999999
Q ss_pred CCcccEEEEEEeCCCCeEEEEeeeeeeecccccceeEEEeeccCCCCCCceEEEEeeccccccccccccccc
Q 000324 1231 GYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFR 1302 (1665)
Q Consensus 1231 ~~~e~~wi~v~d~~~~~il~~~~~~l~~~~~~~~~~~~f~vp~~~p~p~~y~v~~vSD~wl~~e~~~~vs~~ 1302 (1665)
++.|.||+||+|+++++|+|+++|++++....+++.++|.+|...+. ++|+|+++||+|+|++...+++|+
T Consensus 242 ~k~e~~~l~v~d~~~~~il~~~~~~~~~~~~~~~~~l~f~~P~~~~~-~~~~v~v~SD~y~g~d~~~~i~~~ 312 (312)
T smart00611 242 GKQEGWWLVIGDSDGNELLHIERFSLNKKNVSEEVKLDFTAPATEGN-YQYTLRLVSDSYLGCDQEYPLSFD 312 (312)
T ss_pred CCcccEEEEEEeCCCCEEEEEEEEEEEeecCCCcEEEEEEecCCCCc-ceEEEEEEecccCCcceEEEEeeC
Confidence 99999999999999999999999999887665689999999985444 999999999999999999888763
No 9
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=8.8e-51 Score=469.00 Aligned_cols=558 Identities=24% Similarity=0.353 Sum_probs=423.2
Q ss_pred cccCC--CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcE
Q 000324 477 IKISE--MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYK 552 (1665)
Q Consensus 477 ~~i~~--Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~k 552 (1665)
+++++ +|+.++..+ .|++.|.|+|..++.+.+-.++|++|.++|+||||+++.++-+..+... +.|
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~----------g~K 263 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG----------GKK 263 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC----------CCe
Confidence 34554 489999998 7899999999999999988889999999999999999999988887653 558
Q ss_pred EEEEcccHHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhh-------hccccEEEeChhhHHHHHhhcCCCcccccee
Q 000324 553 IVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVK 625 (1665)
Q Consensus 553 il~iaP~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~ 625 (1665)
.+|++|..|||+|.++.|+++..++|++|..-.|-..+.... ...++|||+|.|-+|.++|... .+.+|+
T Consensus 264 mlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~---~lgdiG 340 (830)
T COG1202 264 MLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGK---DLGDIG 340 (830)
T ss_pred EEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCC---cccccc
Confidence 999999999999999999999999999999988866554332 2478999999999999999874 688999
Q ss_pred EEEEeccccccc-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEE
Q 000324 626 LLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQY 704 (1665)
Q Consensus 626 liIiDEaH~l~d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~ 704 (1665)
.|||||+|.|.| +||+-+.-++.|+.+ ..+..|+|+||||+.|+++++..|+..+ +....||||++.|.
T Consensus 341 tVVIDEiHtL~deERG~RLdGLI~RLr~----l~~~AQ~i~LSATVgNp~elA~~l~a~l------V~y~~RPVplErHl 410 (830)
T COG1202 341 TVVIDEIHTLEDEERGPRLDGLIGRLRY----LFPGAQFIYLSATVGNPEELAKKLGAKL------VLYDERPVPLERHL 410 (830)
T ss_pred eEEeeeeeeccchhcccchhhHHHHHHH----hCCCCeEEEEEeecCChHHHHHHhCCee------EeecCCCCChhHee
Confidence 999999999998 799999999999976 4568999999999999999999999875 23456999999988
Q ss_pred EeeecCchhHHHHHHHHHHHHHHHHHhC---CCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhh
Q 000324 705 IGIQVKKPLQRFQLMNDLCYEKVVAVAG---KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHT 781 (1665)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 781 (1665)
+...... .+...++.++-........ .+|+|||++||+.|..+|..|...+..
T Consensus 411 vf~~~e~--eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~---------------------- 466 (830)
T COG1202 411 VFARNES--EKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLK---------------------- 466 (830)
T ss_pred eeecCch--HHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcc----------------------
Confidence 7655332 3333444444333322222 689999999999999999999877643
Q ss_pred hccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCH
Q 000324 782 DMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSP 861 (1665)
Q Consensus 782 ~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~ 861 (1665)
...+||||+..+|..++..|.++.+.++|+|++|+.|||+|+-.||+..- . -+..|+|+
T Consensus 467 ---------------a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsL-----a-MG~~WLs~ 525 (830)
T COG1202 467 ---------------AAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESL-----A-MGIEWLSV 525 (830)
T ss_pred ---------------cccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHH-----H-cccccCCH
Confidence 35679999999999999999999999999999999999999999887421 1 12478999
Q ss_pred HHHHhhhcccCCCCCCCceEEEEEeCCCcH----------HHHHHhh-cCCCccccchhH-hhHHHHHHHHHhccccChH
Q 000324 862 LDIMQMLGRAGRPQYDSYGEGIIITGHSEL----------RYYLSLM-NQQLPIESQFVS-KLADQLNAEIVLGTVQNAK 929 (1665)
Q Consensus 862 ~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~----------~~y~~ll-~~~~piES~l~~-~l~d~lnaeI~~g~i~~~~ 929 (1665)
.+|.||.||||||+|+..|.+|+++.+... +.-.+++ ..+.|+.-.... .-.+++.| ..|...+..
T Consensus 526 ~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~e~e~vLA--~~~v~~s~~ 603 (830)
T COG1202 526 REFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLESEPEPVIVEYDEEDEEENVLA--SAGVTNSLS 603 (830)
T ss_pred HHHHHHhcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHhcCCCCcceeccCcHHHHHHHHH--HhhhcCcHH
Confidence 999999999999999999999999976432 1223343 345565544433 22233333 233333332
Q ss_pred HHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHHHHHHHHHHHhHcCCcccccCCCccccChHHHHHHHhcCC
Q 000324 930 EACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYIS 1009 (1665)
Q Consensus 930 ~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~ 1009 (1665)
+ ++- -|+...|-..+ ...++..|++.|||+.+ ++.+.+|+.|+++|.+++.
T Consensus 604 ~-i~~-----------v~~~~~g~~~~---------------~~k~l~~Lee~g~i~~~--G~~v~~T~yGrava~~Fl~ 654 (830)
T COG1202 604 V-IER-----------VNSLMLGAAFD---------------PKKALSKLEEYGMIKKK--GNIVRPTPYGRAVAMSFLG 654 (830)
T ss_pred H-Hhh-----------cChhhccccCC---------------HHHHHHHHHhcCCeecc--CCEeeeccccceeEEeecC
Confidence 2 111 12222332111 14678899999999865 3669999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHhcCCccCCCCcCChhHHHHHHHHhc-cCCCCCCC--------C----CC-Ch--HHH
Q 000324 1010 HGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLD-RVPIPVKE--------S----LE-EP--SAK 1073 (1665)
Q Consensus 1010 ~~t~~~~~~~l~~~~~~~~ll~~~s~s~Ef~~i~~R~~E~~~l~~l~~-~~~~~~~~--------~----~~-~~--~~K 1073 (1665)
|.++..+...+-..+ +.+++++.-.=|++..+...=+..+.+... ++|-.+-. . +. +| ..|
T Consensus 655 p~~a~~Ir~~v~~~~---~pl~i~~~l~pfE~ayls~~l~r~i~~~~~~~vpsr~f~~a~~~I~~e~d~ii~ld~k~~e~ 731 (830)
T COG1202 655 PSEAEFIREGVLASM---DPLRIAAELEPFENAYLSGFLKRAIESALRGRVPSRLFDSALLDILEEGDKIIELDPKLKEK 731 (830)
T ss_pred chHHHHHHHhhhccC---ChHhHhhccccccccccChHHHHHHHHHhcCCCchhhhhHHHHHHHhchhhhhcCCHHHHHH
Confidence 999998888754333 567777777778888777666666655443 34432211 0 10 22 446
Q ss_pred HHHHHHHHHcC-------------------CCCCC-------------Ccch---hhHHHHHHhHHHHHHHHHHHHHHcC
Q 000324 1074 INVLLQAYISQ-------------------LKLEG-------------LSLT---SDMVFITQSAGRLLRALFEIVLKRG 1118 (1665)
Q Consensus 1074 ~~~Llqa~is~-------------------~~~~~-------------~~l~---~D~~~i~~~a~rl~~a~~ei~~~~g 1118 (1665)
...+.|.+++. +++++ |.+. +|..+-++++.|++.|.-.||...+
T Consensus 732 l~~i~~df~~c~c~d~ce~~~~~lse~ii~lR~~gk~p~~Isr~l~~~Ygi~aYpgDif~wLd~~vr~Lea~~rIArvf~ 811 (830)
T COG1202 732 LLLIYMDFLNCTCRDCCECAEQRLSEKIIELRIEGKDPSQISRILEKRYGIQAYPGDIFTWLDTLVRLLEAIGRIARVFK 811 (830)
T ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhCeeecChhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66677777773 12222 4443 7999999999999999999998877
Q ss_pred CHHHHHHHHHHHHHHHcc
Q 000324 1119 WAQLAEKALNLSKMVTKR 1136 (1665)
Q Consensus 1119 ~~~~a~~~l~L~k~i~~~ 1136 (1665)
--..+..+..|.+-|+.+
T Consensus 812 kr~~~~ea~~lk~~ie~~ 829 (830)
T COG1202 812 KREVEAEAKALKKKIEEG 829 (830)
T ss_pred cHHHHHHHHHHHHHhhcC
Confidence 777777888887776643
No 10
>PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found. This protein is required for assembly of functional endoplasmic reticulum translocons [, ]. Other yeast proteins containing this domain include pre-mRNA splicing helicase BRR2, HFM1 protein and putative helicases. ; PDB: 3IM2_A 3IM1_A 3HIB_A 2Q0Z_X.
Probab=100.00 E-value=8.2e-50 Score=478.75 Aligned_cols=305 Identities=39% Similarity=0.667 Sum_probs=243.1
Q ss_pred cChHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHhcCCccCCCCcCChhHHHHHHHHhccCCCCC-CCCCCChHHHH
Q 000324 996 VTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPV-KESLEEPSAKI 1074 (1665)
Q Consensus 996 ~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~~s~s~Ef~~i~~R~~E~~~l~~l~~~~~~~~-~~~~~~~~~K~ 1074 (1665)
||++|+|||+|||++.||..|...+++.++..++|.++|.|.||+++++|++|+.+|.+|.+.+|+|+ ++.+.+++.|+
T Consensus 1 pT~lG~i~s~yyi~~~T~~~~~~~l~~~~~~~~il~~l~~a~EF~~i~~R~~E~~~l~~l~~~~~~~~~~~~~~~~~~K~ 80 (314)
T PF02889_consen 1 PTELGRIMSRYYISFETMENFFESLKEDMSEKDILELLSSAEEFSEIPVRHNEKKELNELNKKIPYPIKKEKINDPHIKA 80 (314)
T ss_dssp ---CGC--------HHHHHHHHHH--TT--HHHHHHHHHTSGGGCCS---TTHHHHHHHHHCCSSS--STS-TTSHHHHH
T ss_pred CCHHHHHHHHhcccHHHHHHHHHHCCCCCCHHHHHHHHcCcHhHhhCccchhhHHHHHHHHHhcccCccccccccHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999998 77899999999
Q ss_pred HHHHHHHHcCCCCCCCcchhhHHHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHcccCCCCCcccccCCCCHHH
Q 000324 1075 NVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEI 1154 (1665)
Q Consensus 1075 ~~Llqa~is~~~~~~~~l~~D~~~i~~~a~rl~~a~~ei~~~~g~~~~a~~~l~L~k~i~~~~W~~~~pL~Q~~~i~~~~ 1154 (1665)
++||||||+|+++++++|.+|+.+|+++|.||++||+|||..+||+..+.++++|+|||+||+|++.+||+|||||+++.
T Consensus 81 ~~Llqa~l~r~~l~~~~l~~D~~~i~~~~~Rll~a~~ei~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~L~Qlp~i~~~~ 160 (314)
T PF02889_consen 81 FVLLQAHLSRIPLPDSSLRQDLKYILDNAPRLLRAMIEIALEKGWLSTALNALELSQCIVQALWDSDSPLLQLPHIGEES 160 (314)
T ss_dssp HHHHHHHHCT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTBCCHHHHHHHHHHHHHHTS-TTS-GGGGSTT--HHH
T ss_pred HHHHHHhccCCCcCchhHHhhHHhhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhcCCCCChhhcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCC-CchhhccCChHHHhhhhc-CchhhHHHHHHHhcCCcceEEEEEeeccCce---EEEEEEEccCCccCCCC
Q 000324 1155 LMKLEKKDF-AWERYYDLSPQELGELIR-FPKMGRTLHKFVHQFPKLILAAHVQPITRTV---LKVELTITPDFLWDDKV 1229 (1665)
Q Consensus 1155 ~~~l~~~~~-~~~~l~~l~~~el~~ll~-~~~~~~~i~~~~~~~P~l~l~~~v~pit~~~---l~v~l~i~~~~~w~~~~ 1229 (1665)
+++|+++|+ +++++.++++++++.+++ .+++++++.+++++||++++++.++|++... ++|+|++++.+.|++++
T Consensus 161 ~~~l~~~~i~~l~~l~~~~~~e~~~ll~~~~~~~~~i~~~~~~~P~~~i~~~~~~~~~~~~~~~~v~v~i~~~~~~~~~~ 240 (314)
T PF02889_consen 161 LKKLEKRGIKTLQDLRDLSPEELEELLNRNPPFGKEILEVASRIPRLEIKASVQVIDEEIVPILTVQVSITRKFSWSDRF 240 (314)
T ss_dssp HHHHHHTT--SHHHHHHS-HHHHHHHH-S-HHHHHHHHHHHCCS--EEEEEEETTCCGEECSEEEEEEEEEESSS-SST-
T ss_pred HHHHhccCCCcHHHHhhCCHHHHHHHHhhhhhhHHHHHHHHHHCCCEEEEEEEeccccccCCcEEEEEEEEcccccccCC
Confidence 999999995 999999999999999996 6789999999999999999999999998887 99999999999999999
Q ss_pred CCC-cccEEEEEEeCCCCeEEEEeeeee-eecccccceeEEEeeccC-CCCCCceEEEEeecccccccccccccc
Q 000324 1230 HGY-VEPFWVIVEDNDGEYILHHEYFML-KKQYIEEDHSLNFTVPIY-EPLPPQYFIRVVSDKWLGSQTVLPVSF 1301 (1665)
Q Consensus 1230 h~~-~e~~wi~v~d~~~~~il~~~~~~l-~~~~~~~~~~~~f~vp~~-~p~p~~y~v~~vSD~wl~~e~~~~vs~ 1301 (1665)
|+. .+.||++|+|.++++|++++++.+ +++ ....+.++|++|.. .|.+++|.++++||+|+|++..++++|
T Consensus 241 ~~~k~~~~~~~v~~~~~~~l~~~~~~~~~~~~-~~~~~~~~f~vp~~~~~~~~~~~v~v~sd~y~G~d~~~~i~~ 314 (314)
T PF02889_consen 241 PKKKKESWWLFVGDSKNNELLHFERITISKKK-SKDTVKISFQVPIPVGPRPYQYTVYVISDSYLGLDQEVPINF 314 (314)
T ss_dssp SS--B--EEEEEEECCCTEEEEEEEE---SS---EEEEEEEEE--SS-EE--EEEEEEEEESS-SS--EEEEEEE
T ss_pred CCCCcccEEEEEEECCCCeEEEEeeeehhhhc-cCCcEEEEEEecCCCCCCCceEEEEEEECCccccceEEEeeC
Confidence 998 899999999999999999999999 332 35678999999985 555699999999999999999988765
No 11
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.8e-46 Score=415.69 Aligned_cols=336 Identities=22% Similarity=0.348 Sum_probs=281.4
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
.|++.|++||++++|.++.+.+ +|..|.||||||.+|.|||++.+...+ ..+.+++++|||+||.|+.+.|
T Consensus 79 l~~~~PT~IQ~~aiP~~L~g~d-vIglAeTGSGKT~afaLPIl~~LL~~p--------~~~~~lVLtPtRELA~QI~e~f 149 (476)
T KOG0330|consen 79 LGWKKPTKIQSEAIPVALGGRD-VIGLAETGSGKTGAFALPILQRLLQEP--------KLFFALVLTPTRELAQQIAEQF 149 (476)
T ss_pred hCcCCCchhhhhhcchhhCCCc-EEEEeccCCCchhhhHHHHHHHHHcCC--------CCceEEEecCcHHHHHHHHHHH
Confidence 4799999999999999998866 999999999999999999999998853 3589999999999999999999
Q ss_pred HHhhccCCcEEEEEECCCcccHh---hhccccEEEeChhh-HHHHHhhcCCCccccceeEEEEeccccccc-CCchHHHH
Q 000324 571 SNRLQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEK-WDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLES 645 (1665)
Q Consensus 571 ~~~~~~~gi~V~~ltGd~~~~~~---~~~~~~IiV~TPek-ld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~ 645 (1665)
..+....|++|..+.|+.....+ ...++||+|+||++ ||++..... ..+..++++|+||||.+.| +|++.++.
T Consensus 150 e~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkg--f~le~lk~LVlDEADrlLd~dF~~~ld~ 227 (476)
T KOG0330|consen 150 EALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKG--FSLEQLKFLVLDEADRLLDMDFEEELDY 227 (476)
T ss_pred HHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccC--ccHHHhHHHhhchHHhhhhhhhHHHHHH
Confidence 99888999999999999987654 34689999999999 588876554 5688999999999999998 68888887
Q ss_pred HHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEE-ecCCCcccc-ceEEEEeeecCchhHHHHHHHHHH
Q 000324 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY-FDNSYRPVP-LSQQYIGIQVKKPLQRFQLMNDLC 723 (1665)
Q Consensus 646 iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~-f~~~~rpv~-l~~~~~~~~~~~~~~~~~~~~~~~ 723 (1665)
|+..+ +...|.+++|||+| ..+.+.+++.+....-. ....|+.++ +.|+|..++.+.....+ .
T Consensus 228 ILk~i-------p~erqt~LfsATMt--~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yL---V--- 292 (476)
T KOG0330|consen 228 ILKVI-------PRERQTFLFSATMT--KKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYL---V--- 292 (476)
T ss_pred HHHhc-------CccceEEEEEeecc--hhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhH---H---
Confidence 77654 57899999999998 46777777766544332 334455554 66677766655332211 1
Q ss_pred HHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCC
Q 000324 724 YEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAG 803 (1665)
Q Consensus 724 ~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hag 803 (1665)
.+++...++++||||++...+..++-.|+..+..+.. +||.
T Consensus 293 --~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~-------------------------------------LhGq 333 (476)
T KOG0330|consen 293 --YLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIP-------------------------------------LHGQ 333 (476)
T ss_pred --HHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceec-------------------------------------ccch
Confidence 1333444789999999999999999999988766543 3999
Q ss_pred CCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEE
Q 000324 804 MTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883 (1665)
Q Consensus 804 m~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~i 883 (1665)
|++..|.-.++.|++|...|||||++++||+|+|.+++||+ ||.|. +..||+||+||+||.| .+|.+|
T Consensus 334 msq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVN----yDiP~------~skDYIHRvGRtaRaG--rsG~~I 401 (476)
T KOG0330|consen 334 MSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVN----YDIPT------HSKDYIHRVGRTARAG--RSGKAI 401 (476)
T ss_pred hhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEe----cCCCC------cHHHHHHHcccccccC--CCcceE
Confidence 99999999999999999999999999999999999999999 99887 7889999999999999 899999
Q ss_pred EEeCCCcHHHHHHh---hcCCCc
Q 000324 884 IITGHSELRYYLSL---MNQQLP 903 (1665)
Q Consensus 884 il~~~~~~~~y~~l---l~~~~p 903 (1665)
.++++.+++.|.++ +...+|
T Consensus 402 tlVtqyDve~~qrIE~~~gkkl~ 424 (476)
T KOG0330|consen 402 TLVTQYDVELVQRIEHALGKKLP 424 (476)
T ss_pred EEEehhhhHHHHHHHHHHhcCCC
Confidence 99999999888763 555554
No 12
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=2.2e-44 Score=442.07 Aligned_cols=661 Identities=23% Similarity=0.327 Sum_probs=449.4
Q ss_pred CCChhhHhhc---CCCCCCCHHHHHHHH--HHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEE
Q 000324 481 EMPEWAQPAF---KGMTQLNRVQSRVYK--SALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVY 555 (1665)
Q Consensus 481 ~Lp~~~~~~f---~g~~~l~~iQ~~~i~--~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~ 555 (1665)
-+|+.....+ .|...+..+|.+|+. .++ +.+|+|.++||++|||+++.+-+++.+...+ .+++.
T Consensus 206 ~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~-e~~nliys~Pts~gktlvaeilml~~~l~~r----------r~~ll 274 (1008)
T KOG0950|consen 206 RLPTKVSHLYAKDKGILKLFEWQAECLSLPRLL-ERKNLIYSLPTSAGKTLVAEILMLREVLCRR----------RNVLL 274 (1008)
T ss_pred cCchHHHHHHHHhhhHHHHHHHHHHHhcchhhh-cccceEEeCCCccchHHHHHHHHHHHHHHHh----------hceeE
Confidence 4565555544 678899999999984 444 7789999999999999999999999887653 25899
Q ss_pred EcccHHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccc
Q 000324 556 VAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (1665)
Q Consensus 556 iaP~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l 635 (1665)
+.|..+.+++....+..++...|+.|.+++|...... ..+...+.|||-||-..+.....+...+..+++||+||.|++
T Consensus 275 ilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~-~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi 353 (1008)
T KOG0950|consen 275 ILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEK-RRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMI 353 (1008)
T ss_pred ecceeehhHHHHhhhhhhccccCCcchhhcccCCCCC-cccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeee
Confidence 9999999999999999999999999999997665443 345678999999998776666655566788999999999999
Q ss_pred cc-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEe-eecCchh
Q 000324 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIG-IQVKKPL 713 (1665)
Q Consensus 636 ~d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~-~~~~~~~ 713 (1665)
+| +||..+|.++++++..... ..+|+||||||+||..+++.||.+. .+...|||||+...... ......
T Consensus 354 ~d~~rg~~lE~~l~k~~y~~~~--~~~~iIGMSATi~N~~lL~~~L~A~------~y~t~fRPv~L~E~ik~G~~i~~~- 424 (1008)
T KOG0950|consen 354 GDKGRGAILELLLAKILYENLE--TSVQIIGMSATIPNNSLLQDWLDAF------VYTTRFRPVPLKEYIKPGSLIYES- 424 (1008)
T ss_pred eccccchHHHHHHHHHHHhccc--cceeEeeeecccCChHHHHHHhhhh------heecccCcccchhccCCCcccccc-
Confidence 99 7999999999999765433 3489999999999999999999854 56778999999876532 111111
Q ss_pred HHHHHHHHHH--H-------------HHHHHHh-CCCeEEEEecChhHHHHHHHHHHHHhhhcccccccccc-CchhHHH
Q 000324 714 QRFQLMNDLC--Y-------------EKVVAVA-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKE-DSVSREI 776 (1665)
Q Consensus 714 ~~~~~~~~~~--~-------------~~i~~~~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~-~~~~~~~ 776 (1665)
.+...+..+. + ....+.. .+.++|||||+|+.|+.+|..+.........-..++.. +..+.-.
T Consensus 425 ~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~ 504 (1008)
T KOG0950|consen 425 SRNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISN 504 (1008)
T ss_pred hhhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHh
Confidence 0111111111 0 1111222 25679999999999999997776654332111111100 0000000
Q ss_pred HHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCc
Q 000324 777 LQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAW 856 (1665)
Q Consensus 777 l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~ 856 (1665)
........-+..|+..+++|++|||+|++.++|+.|+..|+.|.+.|++||+|++||||+|+.+|||..- ++..
T Consensus 505 ~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP-~~g~----- 578 (1008)
T KOG0950|consen 505 LLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAP-YVGR----- 578 (1008)
T ss_pred HhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCC-cccc-----
Confidence 1111223456789999999999999999999999999999999999999999999999999999999722 1221
Q ss_pred ccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcHHHHHHhhcCCC-ccccchhH----hhHHHHHHHHHhccccChHHH
Q 000324 857 TELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQL-PIESQFVS----KLADQLNAEIVLGTVQNAKEA 931 (1665)
Q Consensus 857 ~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~-piES~l~~----~l~d~lnaeI~~g~i~~~~~~ 931 (1665)
..++..+|.||+|||||.|.|+.|.+++++...+...+..+++.++ |+-|++.. .+...+..-|+.|...+.+|.
T Consensus 579 ~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~~~~~~~~S~l~~e~~g~~~~~ilsvI~~~ia~t~~di 658 (1008)
T KOG0950|consen 579 EFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRELVNSPLKPLNSCLSNEVNGPILMAILSLISLKIAETAEDI 658 (1008)
T ss_pred chhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHHHhccccccccccccccccccceeehhhhcchhhhhHHHH
Confidence 3468899999999999999999999999999999888888888766 46666643 122345556777888899999
Q ss_pred HHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHHHHHHHH-HHHhHcCCcc-cccCCCccccChHHHHHHHhcCC
Q 000324 932 CNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAA-TILDRNNLVK-YDRKSGYFQVTDLGRIASYYYIS 1009 (1665)
Q Consensus 932 ~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~-~~L~~~~~i~-~~~~~~~~~~T~lG~i~s~~yi~ 1009 (1665)
..+..+|+++.... |..-..+.+ ...+.. .+..+. ..+-+..+|. .........+|+||+..=.-.++
T Consensus 659 ~~~va~tl~s~q~~--~~~~~~~le-~~s~ql-------~~~~~~~d~~l~~d~i~~~~~~~~~~~~t~Lg~a~f~~~~~ 728 (1008)
T KOG0950|consen 659 LHFVAVTLLSAQEK--PENVREQLE-MESDQL-------VINDFKSDQLLEKDFIYKKQIENLRENITRLGRACFNAGSD 728 (1008)
T ss_pred HHHHHHhhhhcccc--hhhhhhccc-chhhhh-------ccchhhHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCC
Confidence 99999999876432 111111111 001100 001111 1222233333 11111122389999987666777
Q ss_pred HHHHHHHHHhcCCCCC----HHHHHHHhcCCccC-CCCcCChhHHHHHHHHhccCCCC------------------CCCC
Q 000324 1010 HGTISTYNEHLKPTMG----DIELCRLFSLSEEF-KYVTVRQDEKMELAKLLDRVPIP------------------VKES 1066 (1665)
Q Consensus 1010 ~~t~~~~~~~l~~~~~----~~~ll~~~s~s~Ef-~~i~~R~~E~~~l~~l~~~~~~~------------------~~~~ 1066 (1665)
|.-...+...|+..+. +..+ +++=.-.=| .. .+...-.+.-.+...+|-| +++.
T Consensus 729 ~~~a~~l~~~L~~~~~~~vle~~l-h~lylvtP~~~~--~~~~dwli~f~i~~~L~~~~~~~~~~~G~~e~fi~~~~~gq 805 (1008)
T KOG0950|consen 729 PEVANILFADLKKSLPQLVLESSL-HLLYLVTPYLEV--MNDIDWLIYFQIYHTLPSPEQKLAKLLGVIESFIEKCVSGQ 805 (1008)
T ss_pred hhhhHHHHHHHHHhhhcccccccc-ceeeeecchHhh--cccccHHHHHHHHhcCCcHHHHHHhhhchHHHHHHHhhhcc
Confidence 6655544433332210 0000 100000000 00 0011111111122222211 0110
Q ss_pred ----CCCh----HHHHHHHHHHHHcCCCC----CCCcch-hhHHHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000324 1067 ----LEEP----SAKINVLLQAYISQLKL----EGLSLT-SDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMV 1133 (1665)
Q Consensus 1067 ----~~~~----~~K~~~Llqa~is~~~~----~~~~l~-~D~~~i~~~a~rl~~a~~ei~~~~g~~~~a~~~l~L~k~i 1133 (1665)
..+. ..=+...||.+++..++ ++|... +=+...++++.+...++.-.|.+.+|.....-.-++-+.+
T Consensus 806 s~~~~~~~~~~~r~y~~l~L~~li~espi~~V~~kYk~~rg~lqall~~a~~~a~~It~Fce~l~w~~~~~l~~~~~~rl 885 (1008)
T KOG0950|consen 806 SVRNLQNVQKRKRLYVALALQKLINESPIRTVAEKYKVERGRLQALLSNASSFASLITFFCESIQWFPLRALLSEFYGRL 885 (1008)
T ss_pred ccccccchhHHHHHHHHHHHHHHHhhCcHHHHHHHhCchHHHHHHHHhcchhHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 1111 22367789999999887 445444 4566788999999999999999999974444444567777
Q ss_pred HcccCCCCCcccccCCCCHHHHHHHHhCCC-CchhhccCChHHHhhhhc
Q 000324 1134 TKRMWSVQTPLRQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIR 1181 (1665)
Q Consensus 1134 ~~~~W~~~~pL~Q~~~i~~~~~~~l~~~~~-~~~~l~~l~~~el~~ll~ 1181 (1665)
..+.-.+..||.-+|++...++++|+.+|+ ++.+|..-++.++..-+.
T Consensus 886 ~~g~~~eL~~Lmrv~~~~~~RAr~lf~Agf~tv~~iA~a~p~klvkel~ 934 (1008)
T KOG0950|consen 886 SFGGHAELIPLMRVPDVKAERARQLFKAGFTSVGSIANATPEKLVKELP 934 (1008)
T ss_pred hccchhhhhhhhcCchhHHHHHHHHHHhhccchHHHhcCChHHHHHHhh
Confidence 788888899999999999999999999999 778888888888776553
No 13
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.8e-43 Score=469.74 Aligned_cols=414 Identities=23% Similarity=0.324 Sum_probs=294.7
Q ss_pred CCCChhhHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcc
Q 000324 480 SEMPEWAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1665)
Q Consensus 480 ~~Lp~~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (1665)
+.|++.++..| .+|..|||+|.++++.++.+ +|++++||||||||++|++|+++.+.......+ ...+.++|||+|
T Consensus 16 ~~l~~~v~~~~~~~~~~~tpiQ~~Ai~~il~g-~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~--~~~~~~~LyIsP 92 (876)
T PRK13767 16 DLLRPYVREWFKEKFGTFTPPQRYAIPLIHEG-KNVLISSPTGSGKTLAAFLAIIDELFRLGREGE--LEDKVYCLYVSP 92 (876)
T ss_pred hhcCHHHHHHHHHccCCCCHHHHHHHHHHHcC-CCEEEECCCCCcHHHHHHHHHHHHHHhhccccC--CCCCeEEEEEcC
Confidence 44677777777 57889999999999997665 679999999999999999999998875321110 123678999999
Q ss_pred cHHHHHHHHHHHHHhh-----------ccC-CcEEEEEECCCcccHhh---hccccEEEeChhhHHHHHhhcCCCccccc
Q 000324 559 MKALVAEVVGNLSNRL-----------QMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQL 623 (1665)
Q Consensus 559 ~raLa~q~~~~~~~~~-----------~~~-gi~V~~ltGd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~ 623 (1665)
+|+|+.|+++++...+ ... +++|...+||.....+. ...++|+|||||+|..+.+.......+.+
T Consensus 93 traLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~ 172 (876)
T PRK13767 93 LRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRT 172 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhc
Confidence 9999999998766422 122 67899999998765542 24689999999999777765443346789
Q ss_pred eeEEEEeccccccc-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhcccc----CceEEecCC-Ccc
Q 000324 624 VKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLE----KGLFYFDNS-YRP 697 (1665)
Q Consensus 624 v~liIiDEaH~l~d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~----~~~~~f~~~-~rp 697 (1665)
+++|||||+|.+.+ .||..++.++.++.... ....|+|++|||++|.++++.|+..... ..+...... .++
T Consensus 173 l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~---~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~ 249 (876)
T PRK13767 173 VKWVIVDEIHSLAENKRGVHLSLSLERLEELA---GGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKP 249 (876)
T ss_pred CCEEEEechhhhccCccHHHHHHHHHHHHHhc---CCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCcc
Confidence 99999999999986 69999999999886643 4578999999999999999999975311 112222221 222
Q ss_pred ccceEEEEeeecCchhHHHHHHHHHHHHHHHHHh-CCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHH
Q 000324 698 VPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVA-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREI 776 (1665)
Q Consensus 698 v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~ 776 (1665)
..+.... ..... .......+...++..+.... ..+++||||+|++.|+.++..|.......
T Consensus 250 ~~i~v~~-p~~~l-~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~---------------- 311 (876)
T PRK13767 250 FDIKVIS-PVDDL-IHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEE---------------- 311 (876)
T ss_pred ceEEEec-cCccc-cccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhh----------------
Confidence 2221110 00000 00000111222233333322 26789999999999999999987643110
Q ss_pred HHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCc
Q 000324 777 LQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAW 856 (1665)
Q Consensus 777 l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~ 856 (1665)
....++++|||+|++++|..+++.|++|.++|||||+++++|||+|++++||+ |++|.
T Consensus 312 ---------------~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~----~~~P~--- 369 (876)
T PRK13767 312 ---------------YDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVL----LGSPK--- 369 (876)
T ss_pred ---------------ccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEE----eCCCC---
Confidence 12367999999999999999999999999999999999999999999999999 88776
Q ss_pred ccCCHHHHHhhhcccCCCCCCCceEEEEEeCC-CcH-HH--HHH-hhcC-CCc--cccchhHhhHHHHHHHHHhccccCh
Q 000324 857 TELSPLDIMQMLGRAGRPQYDSYGEGIIITGH-SEL-RY--YLS-LMNQ-QLP--IESQFVSKLADQLNAEIVLGTVQNA 928 (1665)
Q Consensus 857 ~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~-~~~-~~--y~~-ll~~-~~p--iES~l~~~l~d~lnaeI~~g~i~~~ 928 (1665)
|+.+|+||+|||||.+ +..+.+++++.. .+. +. +.+ .... ..| +...-...|..|+.+-++.+ .-+.
T Consensus 370 ---sv~~ylQRiGRaGR~~-g~~~~g~ii~~~~~~l~e~~~~~~~~~~~~ie~~~~~~~~~dvl~q~i~~~~~~~-~~~~ 444 (876)
T PRK13767 370 ---SVSRLLQRIGRAGHRL-GEVSKGRIIVVDRDDLVECAVLLKKAREGKIDRVHIPKNPLDVLAQHIVGMAIER-PWDI 444 (876)
T ss_pred ---CHHHHHHhcccCCCCC-CCCCcEEEEEcCchhHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHcC-CCCH
Confidence 8999999999999864 233344444433 332 21 111 1111 112 22233456788888866654 6689
Q ss_pred HHHHHHHHhhHHHHHh
Q 000324 929 KEACNWIGYTYLYIRM 944 (1665)
Q Consensus 929 ~~~~~wl~~t~~~~r~ 944 (1665)
+++.+|+..||.|+.+
T Consensus 445 ~~~~~~~~~~~~~~~l 460 (876)
T PRK13767 445 EEAYNIVRRAYPYRDL 460 (876)
T ss_pred HHHHHHHhccCCcccC
Confidence 9999999999988753
No 14
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.2e-44 Score=444.38 Aligned_cols=346 Identities=34% Similarity=0.562 Sum_probs=296.6
Q ss_pred cCCCCCCCCCCCCCCCCCCcccccchhHHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHH
Q 000324 1304 LILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQ 1383 (1665)
Q Consensus 1304 l~lp~~~~~~t~ll~l~p~~~~~L~~~~~~~l~~~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~ 1383 (1665)
.+.|...|++ ...-..+.++.|. ...+.-|.+|..||.+|+.|||.+|+++.|.|||||||||||..|+|+||+.+.
T Consensus 76 ~~~P~s~~~~--~~~~k~~~isdld-~~~rk~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik 152 (1230)
T KOG0952|consen 76 VKIPASVPMP--MDGEKLLSISDLD-DVGRKGFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIK 152 (1230)
T ss_pred EecCccCCCc--cccccceeEEecc-hhhhhhcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHH
Confidence 3455555554 2223333444443 244422335999999999999999999999999999999999999999999999
Q ss_pred hhc-----CCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhhc
Q 000324 1384 KAS-----ETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQ 1458 (1665)
Q Consensus 1384 ~~~-----~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~ 1458 (1665)
+.. ..+..++|||+|++|||.++++.|.++|+. +|++|..+|||+......+..++|||+|||+|+.+.|+|..
T Consensus 153 ~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~-~gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~ 231 (1230)
T KOG0952|consen 153 EHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAP-LGISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVG 231 (1230)
T ss_pred hhccccccccCCceEEEEechHHHHHHHHHHHhhhccc-ccceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeecc
Confidence 631 233469999999999999999999999875 58999999999988766688999999999999999998765
Q ss_pred c-ccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCChHHHHHHhccc-CCcEEecCCCCC
Q 000324 1459 R-KYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGAT-SHGLFNFPPGVR 1536 (1665)
Q Consensus 1459 ~-~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~~dl~~wl~~~-~~~~~~f~~~~r 1536 (1665)
. ..++.|+||||||+|++-+++||++|.++.|+....+.....+|+||||||+||..|+|.||++. ..++|.|....|
T Consensus 232 d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yR 311 (1230)
T KOG0952|consen 232 DSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYR 311 (1230)
T ss_pred chhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeeccccc
Confidence 3 35678999999999999999999999999999988888888999999999999999999999997 468999999999
Q ss_pred ccceEEEEeecccchhhHHHHhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccc
Q 000324 1537 PVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEV 1616 (1665)
Q Consensus 1537 pv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l 1616 (1665)
|+|++.++.|............+....+..+.+.+..+.+++|||.+|..+..+|+.|...+...+.... |+.
T Consensus 312 PvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~-f~~------ 384 (1230)
T KOG0952|consen 312 PVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDL-FLP------ 384 (1230)
T ss_pred ccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccc-cCC------
Confidence 9999999999888866666777888889999999999999999999999999999999887765554433 432
Q ss_pred hhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1617 EPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1617 ~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
.-.++.|+++...|+++||+||..+||..+++.|+.|.++||||
T Consensus 385 -----~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~c 428 (1230)
T KOG0952|consen 385 -----SPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCC 428 (1230)
T ss_pred -----ChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEe
Confidence 22667899999999999999999999999999999999999999
No 15
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.2e-42 Score=438.32 Aligned_cols=450 Identities=23% Similarity=0.306 Sum_probs=333.2
Q ss_pred cCCCChhhHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEc
Q 000324 479 ISEMPEWAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA 557 (1665)
Q Consensus 479 i~~Lp~~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~ia 557 (1665)
.+.|++++++.| ..|.+|||.|.++++.+.. ++|+||+||||||||.+|.||++..+..... ....++..+|||+
T Consensus 5 ~~~l~~~v~~~~~~~~~~~t~~Q~~a~~~i~~-G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~---~~~~~~i~~lYIs 80 (814)
T COG1201 5 FNILDPRVREWFKRKFTSLTPPQRYAIPEIHS-GENVLIIAPTGSGKTEAAFLPVINELLSLGK---GKLEDGIYALYIS 80 (814)
T ss_pred hhhcCHHHHHHHHHhcCCCCHHHHHHHHHHhC-CCceEEEcCCCCChHHHHHHHHHHHHHhccC---CCCCCceEEEEeC
Confidence 456889999999 4599999999999999885 5789999999999999999999999987621 1122468999999
Q ss_pred ccHHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhh---hccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccc
Q 000324 558 PMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (1665)
Q Consensus 558 P~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~ 634 (1665)
|.|||.+++.+++...+..+|+.|..-+||++...++ .+.+||+|||||.+..++-...-+..+.+|+++||||+|.
T Consensus 81 PLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHe 160 (814)
T COG1201 81 PLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHA 160 (814)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhh
Confidence 9999999999999999999999999999999876543 3578999999999977766555567899999999999999
Q ss_pred ccc-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchh
Q 000324 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713 (1665)
Q Consensus 635 l~d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~ 713 (1665)
+.+ .||..+...+.|+.... + ..|.||||||+.+++++++||........+.-.+..++..+.............
T Consensus 161 l~~sKRG~~Lsl~LeRL~~l~---~-~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~ 236 (814)
T COG1201 161 LAESKRGVQLALSLERLRELA---G-DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDE 236 (814)
T ss_pred hhccccchhhhhhHHHHHhhC---c-ccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCcccccc
Confidence 986 79999999999986542 2 889999999999999999999876311122222222222222111111100011
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhc
Q 000324 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (1665)
Q Consensus 714 ~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll 793 (1665)
.....+...+++.+.+ ...+|||+|||..|+.++..|...+.
T Consensus 237 ~~~~~~~~~i~~~v~~---~~ttLIF~NTR~~aE~l~~~L~~~~~----------------------------------- 278 (814)
T COG1201 237 ELWAALYERIAELVKK---HRTTLIFTNTRSGAERLAFRLKKLGP----------------------------------- 278 (814)
T ss_pred chhHHHHHHHHHHHhh---cCcEEEEEeChHHHHHHHHHHHHhcC-----------------------------------
Confidence 1112222233333332 34799999999999999999887642
Q ss_pred CCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCC
Q 000324 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (1665)
Q Consensus 794 ~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (1665)
..+..|||+++++.|..+|+.|++|.++++|||++++-|||+-+++.||+ |+.|. |+..++||+||+|+
T Consensus 279 -~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq----~~SP~------sV~r~lQRiGRsgH 347 (814)
T COG1201 279 -DIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQ----LGSPK------SVNRFLQRIGRAGH 347 (814)
T ss_pred -CceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEE----eCCcH------HHHHHhHhcccccc
Confidence 35899999999999999999999999999999999999999999999999 88887 89999999999998
Q ss_pred CCCCCceEEEEEeCCCcHHHHHH------hhc---CCCccccchhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHh
Q 000324 874 PQYDSYGEGIIITGHSELRYYLS------LMN---QQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRM 944 (1665)
Q Consensus 874 ~g~d~~G~~iil~~~~~~~~y~~------ll~---~~~piES~l~~~l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~~r~ 944 (1665)
+.+...++++++.+ ..+.++. ... +..++.-.-...|..++.+.+... .-+.+++.+.+..+|.|+.+
T Consensus 348 -r~~~~Skg~ii~~~-r~dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ivg~~~~~-~~~~~~~y~~vrraypy~~L 424 (814)
T COG1201 348 -RLGEVSKGIIIAED-RDDLLECLVLADLALEGKLERIKIPKNPLDVLAQQIVGMALEK-VWEVEEAYRVVRRAYPYADL 424 (814)
T ss_pred -ccCCcccEEEEecC-HHHHHHHHHHHHHHHhCCcccCCCCCcchhHHHHHHHHHHhhC-cCCHHHHHHHHHhccccccC
Confidence 35677889999887 2222221 111 133444555567888888877777 77888888888888876532
Q ss_pred hcCCcccCCCccccccchhHHHHHHHHHHHHHHHHhH--cCCcccccCC-CccccChHHHHHHHhcCCHHHH
Q 000324 945 LRNPALYGLAPEVLKEDITLGERRADLVHTAATILDR--NNLVKYDRKS-GYFQVTDLGRIASYYYISHGTI 1013 (1665)
Q Consensus 945 ~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~--~~~i~~~~~~-~~~~~T~lG~i~s~~yi~~~t~ 1013 (1665)
+. +-..+.++.|.. ...++...+. |.+ +.-.....+||....|+
T Consensus 425 ---------~~--------------e~f~~v~~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~y~~n~~tI 471 (814)
T COG1201 425 ---------SR--------------EDFRLVLRYLAGEKNVYAKIWLDEDGLF--GRGKGTRMIYYMNYGTI 471 (814)
T ss_pred ---------CH--------------HHHHHHHHHHhhcccceeEEeecCccee--ccCccceeeeeeccccc
Confidence 21 223556777777 6666554322 322 33233445555555543
No 16
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.3e-42 Score=452.63 Aligned_cols=356 Identities=21% Similarity=0.219 Sum_probs=271.8
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcc
Q 000324 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1665)
Q Consensus 481 ~Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (1665)
.|++.+..++ .||+.|+++|.++++.++.+ +|++++||||||||++|.+|+++.+... .+.++|||+|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G-~nvvv~apTGSGKTla~~LPiL~~l~~~---------~~~~aL~l~P 89 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAG-RHVVVATGTASGKSLAYQLPVLSALADD---------PRATALYLAP 89 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCC-CCEEEECCCCCcHHHHHHHHHHHHHhhC---------CCcEEEEEcC
Confidence 4677777777 68999999999999998766 5699999999999999999999998653 2468999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhh--hccccEEEeChhhHH-HHHhhc-CCCccccceeEEEEecccc
Q 000324 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ--IEETQIIVTTPEKWD-IITRKS-GDRTYTQLVKLLIIDEIHL 634 (1665)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~--~~~~~IiV~TPekld-~l~r~~-~~~~~l~~v~liIiDEaH~ 634 (1665)
|||||.|++..++++. ..++++..++|+.....+. ..+++|+|+||+.+. .+++.. ....+++++++|||||+|.
T Consensus 90 traLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~ 168 (742)
T TIGR03817 90 TKALAADQLRAVRELT-LRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHS 168 (742)
T ss_pred hHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhh
Confidence 9999999999999865 4578999999998765432 356899999999874 222211 1113578999999999999
Q ss_pred cccCCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeec-----
Q 000324 635 LHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQV----- 709 (1665)
Q Consensus 635 l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~----- 709 (1665)
+.+.+|..+..++.|+.+.....+.++|+|++|||++|..+++.++...+ ...++.+..|.......+....
T Consensus 169 ~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~---~~~i~~~~~~~~~~~~~~~~p~~~~~~ 245 (742)
T TIGR03817 169 YRGVFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIGAP---VVAVTEDGSPRGARTVALWEPPLTELT 245 (742)
T ss_pred ccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCC---eEEECCCCCCcCceEEEEecCCccccc
Confidence 98789999999999998887777788999999999999988887765443 3334444444332222111111
Q ss_pred -Cc--hhHH--HHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhcc
Q 000324 710 -KK--PLQR--FQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMV 784 (1665)
Q Consensus 710 -~~--~~~~--~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~ 784 (1665)
.. ...+ .......+...+. .+.++||||+||+.|+.++..|........
T Consensus 246 ~~~~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~----------------------- 299 (742)
T TIGR03817 246 GENGAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVD----------------------- 299 (742)
T ss_pred cccccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhc-----------------------
Confidence 00 0000 0111112222221 267999999999999999998876431110
Q ss_pred ccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHH
Q 000324 785 KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDI 864 (1665)
Q Consensus 785 ~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~ 864 (1665)
..+..++..|||||++++|..+++.|++|.+++||||+++++|||+|++++||+ |+.|. +..+|
T Consensus 300 ------~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~----~~~P~------s~~~y 363 (742)
T TIGR03817 300 ------PDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVI----AGFPG------TRASL 363 (742)
T ss_pred ------cccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEE----eCCCC------CHHHH
Confidence 012345788999999999999999999999999999999999999999999999 88876 89999
Q ss_pred HhhhcccCCCCCCCceEEEEEeCCCcHHHH
Q 000324 865 MQMLGRAGRPQYDSYGEGIIITGHSELRYY 894 (1665)
Q Consensus 865 ~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y 894 (1665)
+||+|||||.| ..|.++++++.+..+.|
T Consensus 364 ~qRiGRaGR~G--~~g~ai~v~~~~~~d~~ 391 (742)
T TIGR03817 364 WQQAGRAGRRG--QGALVVLVARDDPLDTY 391 (742)
T ss_pred HHhccccCCCC--CCcEEEEEeCCChHHHH
Confidence 99999999988 67999999886544433
No 17
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.6e-42 Score=420.05 Aligned_cols=401 Identities=27% Similarity=0.371 Sum_probs=312.6
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (1665)
.+-.+|++||-.+ ..+++|+|.|+|.||||++|+.||.-.-.+ ..|+||.+|.|||.+|.+++|+..|
T Consensus 297 elD~FQk~Ai~~l-erg~SVFVAAHTSAGKTvVAEYAialaq~h-----------~TR~iYTSPIKALSNQKfRDFk~tF 364 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHL-ERGDSVFVAAHTSAGKTVVAEYAIALAQKH-----------MTRTIYTSPIKALSNQKFRDFKETF 364 (1248)
T ss_pred CccHHHHHHHHHH-HcCCeEEEEecCCCCcchHHHHHHHHHHhh-----------ccceEecchhhhhccchHHHHHHhc
Confidence 7889999999875 455779999999999999999998755332 4589999999999999999999988
Q ss_pred ccCCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc-CCchHHHHHHHHHHHH
Q 000324 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQ 653 (1665)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~r~~~~ 653 (1665)
.. |+.+|||.+++. ++.++|+|.|-|..++-+.. ..++++.+||+||+|.+.| +||.++|.++--
T Consensus 365 ~D----vgLlTGDvqinP----eAsCLIMTTEILRsMLYrga--dliRDvE~VIFDEVHYiND~eRGvVWEEViIM---- 430 (1248)
T KOG0947|consen 365 GD----VGLLTGDVQINP----EASCLIMTTEILRSMLYRGA--DLIRDVEFVIFDEVHYINDVERGVVWEEVIIM---- 430 (1248)
T ss_pred cc----cceeecceeeCC----CcceEeehHHHHHHHHhccc--chhhccceEEEeeeeecccccccccceeeeee----
Confidence 64 559999999876 58899999998865555554 3678899999999999999 899999988753
Q ss_pred HhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCc------------------hhH-
Q 000324 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKK------------------PLQ- 714 (1665)
Q Consensus 654 ~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~------------------~~~- 714 (1665)
.+.++++|+||||+||..+++.|+|-...+.+++....-|||||+.++..-.... ...
T Consensus 431 ---lP~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~ 507 (1248)
T KOG0947|consen 431 ---LPRHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLK 507 (1248)
T ss_pred ---ccccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhc
Confidence 5889999999999999999999999887788888888899999998664311000 000
Q ss_pred ---HHH------------------------H--------H-HH--HHHHHHHHHhC---CCeEEEEecChhHHHHHHHHH
Q 000324 715 ---RFQ------------------------L--------M-ND--LCYEKVVAVAG---KHQVLIFVHSRKETAKTARAI 753 (1665)
Q Consensus 715 ---~~~------------------------~--------~-~~--~~~~~i~~~~~---~~~vLVFv~sr~~~~~~a~~L 753 (1665)
++. . - .. ..|-.+..+.. --|++|||-||+.|...|+.|
T Consensus 508 ~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L 587 (1248)
T KOG0947|consen 508 KEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYL 587 (1248)
T ss_pred ccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHH
Confidence 000 0 0 00 12222333332 348999999999999999999
Q ss_pred HHHhhhccccccccccCchhH-HH-HHhhhhcc--------ccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCe
Q 000324 754 RDTALENDTLGRFLKEDSVSR-EI-LQSHTDMV--------KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQV 823 (1665)
Q Consensus 754 ~~~~~~~~~l~~~~~~~~~~~-~~-l~~~~~~~--------~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~V 823 (1665)
......... ..+. .. +.+..... +--.+.+++..|+++||||+-+--++.|+-+|..|-++|
T Consensus 588 ~~~nL~~~~--------EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKV 659 (1248)
T KOG0947|consen 588 TNLNLTDSK--------EKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKV 659 (1248)
T ss_pred hccCcccch--------hHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEE
Confidence 876443211 1111 11 11111111 223578899999999999999999999999999999999
Q ss_pred EEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCC--cHHHHHHh-hcC
Q 000324 824 LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS--ELRYYLSL-MNQ 900 (1665)
Q Consensus 824 LVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~--~~~~y~~l-l~~ 900 (1665)
|+||-|+|+|||+|+.+||+.+.+..|+.. +.++.+-+|.||+|||||.|.|..|.+|+++... ....+..+ +..
T Consensus 660 LFATETFAMGVNMPARtvVF~Sl~KhDG~e--fR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~G~ 737 (1248)
T KOG0947|consen 660 LFATETFAMGVNMPARTVVFSSLRKHDGNE--FRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIMGG 737 (1248)
T ss_pred EeehhhhhhhcCCCceeEEeeehhhccCcc--eeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHhcCC
Confidence 999999999999999999999999998765 7899999999999999999999999999999874 56666665 678
Q ss_pred CCccccchhHhhHHHHHHHHHhccccChHHHHHHHHhhH
Q 000324 901 QLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTY 939 (1665)
Q Consensus 901 ~~piES~l~~~l~d~lnaeI~~g~i~~~~~~~~wl~~t~ 939 (1665)
+.+++|||.-.....||---+.. -.+-+.++++|
T Consensus 738 ~~~L~SQFRlTY~MILnLLRve~-----lrvEdm~krSf 771 (1248)
T KOG0947|consen 738 PTRLESQFRLTYGMILNLLRVEA-----LRVEDMMKRSF 771 (1248)
T ss_pred CchhhhhhhhHHHHHHHHHHHHH-----HHHHHHHHHHh
Confidence 89999999887666666432221 24455666776
No 18
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-42 Score=413.85 Aligned_cols=345 Identities=21% Similarity=0.298 Sum_probs=263.1
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEccc
Q 000324 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1665)
Q Consensus 482 Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (1665)
|++....++ .||..|+|||.++++.++.+.+ ++..|.||||||++|++|++.++...... ....+++.+|+++||
T Consensus 98 ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD-~v~iA~TGSGKTLay~lP~i~~l~~~~~~--~~~~~~P~vLVL~PT 174 (519)
T KOG0331|consen 98 LSEELMKALKEQGFEKPTPIQAQGWPIALSGRD-LVGIARTGSGKTLAYLLPAIVHLNNEQGK--LSRGDGPIVLVLAPT 174 (519)
T ss_pred ccHHHHHHHHhcCCCCCchhhhcccceeccCCc-eEEEeccCCcchhhhhhHHHHHHHhcccc--ccCCCCCeEEEEcCc
Confidence 344444444 7999999999999999999866 99999999999999999999999863111 112357899999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhhh---ccccEEEeChhhH-HHHHhhcCCCccccceeEEEEeccccc
Q 000324 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQI---EETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLL 635 (1665)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~~---~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~l 635 (1665)
|+||.|+.+.+.++...+++++.+++|+.+...|.. ...+|+|+||+++ |.+..... .++++.++|+||||.|
T Consensus 175 RELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~---~l~~v~ylVLDEADrM 251 (519)
T KOG0331|consen 175 RELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSL---NLSRVTYLVLDEADRM 251 (519)
T ss_pred HHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCc---cccceeEEEeccHHhh
Confidence 999999999999998888899999999999887643 4689999999997 66655543 6789999999999999
Q ss_pred cc-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCC-hHHHH-HHHhccccCceEEecCCCc-cccceEEEEeeecCc
Q 000324 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVA-LFLRVNLEKGLFYFDNSYR-PVPLSQQYIGIQVKK 711 (1665)
Q Consensus 636 ~d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n-~~dv~-~~l~~~~~~~~~~f~~~~r-pv~l~~~~~~~~~~~ 711 (1665)
.| ++.+.++.|+.++ .++..|+++.|||.|. ...++ .|+. ++..-.+....... ...+.|....+.
T Consensus 252 ldmGFe~qI~~Il~~i------~~~~rQtlm~saTwp~~v~~lA~~fl~-~~~~i~ig~~~~~~a~~~i~qive~~~--- 321 (519)
T KOG0331|consen 252 LDMGFEPQIRKILSQI------PRPDRQTLMFSATWPKEVRQLAEDFLN-NPIQINVGNKKELKANHNIRQIVEVCD--- 321 (519)
T ss_pred hccccHHHHHHHHHhc------CCCcccEEEEeeeccHHHHHHHHHHhc-CceEEEecchhhhhhhcchhhhhhhcC---
Confidence 99 7999988888765 2344489999999985 33333 4444 43211111110111 111222211122
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhh
Q 000324 712 PLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (1665)
Q Consensus 712 ~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 791 (1665)
...+...+..+ ...+. ...++++||||+|++.|.+++..|...+
T Consensus 322 ~~~K~~~l~~l-L~~~~-~~~~~KvIIFc~tkr~~~~l~~~l~~~~---------------------------------- 365 (519)
T KOG0331|consen 322 ETAKLRKLGKL-LEDIS-SDSEGKVIIFCETKRTCDELARNLRRKG---------------------------------- 365 (519)
T ss_pred HHHHHHHHHHH-HHHHh-ccCCCcEEEEecchhhHHHHHHHHHhcC----------------------------------
Confidence 11122222221 11121 2236799999999999999999988754
Q ss_pred hcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhccc
Q 000324 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871 (1665)
Q Consensus 792 ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRA 871 (1665)
++...+||..++.+|..+++.|++|...|||||+++|+|+|+|+|++||+ ||+|. ++.+|+||+||+
T Consensus 366 ---~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVIn----ydfP~------~vEdYVHRiGRT 432 (519)
T KOG0331|consen 366 ---WPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVIN----YDFPN------NVEDYVHRIGRT 432 (519)
T ss_pred ---cceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEe----CCCCC------CHHHHHhhcCcc
Confidence 23456699999999999999999999999999999999999999999999 99998 899999999999
Q ss_pred CCCCCCCceEEEEEeCCCcHHH
Q 000324 872 GRPQYDSYGEGIIITGHSELRY 893 (1665)
Q Consensus 872 GR~g~d~~G~~iil~~~~~~~~ 893 (1665)
||.| ..|.++.+.+..+...
T Consensus 433 GRa~--~~G~A~tfft~~~~~~ 452 (519)
T KOG0331|consen 433 GRAG--KKGTAITFFTSDNAKL 452 (519)
T ss_pred ccCC--CCceEEEEEeHHHHHH
Confidence 9987 8999999999876544
No 19
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=9.7e-42 Score=427.54 Aligned_cols=345 Identities=19% Similarity=0.274 Sum_probs=261.4
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcc
Q 000324 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1665)
Q Consensus 481 ~Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (1665)
.|++++...+ .||..||++|.++++.++.+. |+|++||||||||++|++|+++.+....... ......++|||+|
T Consensus 7 ~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~-dvlv~apTGsGKTla~~lpil~~l~~~~~~~--~~~~~~~aLil~P 83 (456)
T PRK10590 7 GLSPDILRAVAEQGYREPTPIQQQAIPAVLEGR-DLMASAQTGTGKTAGFTLPLLQHLITRQPHA--KGRRPVRALILTP 83 (456)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-CEEEECCCCCcHHHHHHHHHHHHhhhccccc--ccCCCceEEEEeC
Confidence 3566666666 789999999999999998764 5999999999999999999999986542210 1123468999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhh---hccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccc
Q 000324 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (1665)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l 635 (1665)
|++||.|+++.+..+....++++..++|+.+.+.+. ...++|+|+||++|..+..... ..++.+++|||||||++
T Consensus 84 treLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~--~~l~~v~~lViDEah~l 161 (456)
T PRK10590 84 TRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNA--VKLDQVEILVLDEADRM 161 (456)
T ss_pred cHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCC--cccccceEEEeecHHHH
Confidence 999999999999998888899999999998876543 2478999999999754444332 35788999999999999
Q ss_pred cc-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCC-hHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchh
Q 000324 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713 (1665)
Q Consensus 636 ~d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n-~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~ 713 (1665)
.+ .+...+..++. ..+...|++++|||+++ ..+++.++..++. .+...........+.+.+..+...
T Consensus 162 l~~~~~~~i~~il~-------~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~-~i~~~~~~~~~~~i~~~~~~~~~~--- 230 (456)
T PRK10590 162 LDMGFIHDIRRVLA-------KLPAKRQNLLFSATFSDDIKALAEKLLHNPL-EIEVARRNTASEQVTQHVHFVDKK--- 230 (456)
T ss_pred hccccHHHHHHHHH-------hCCccCeEEEEeCCCcHHHHHHHHHHcCCCe-EEEEecccccccceeEEEEEcCHH---
Confidence 87 45555544443 34567899999999986 4566655544431 122222222222344443332221
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhc
Q 000324 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (1665)
Q Consensus 714 ~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll 793 (1665)
.+...+ ..+.......++||||+++..+..++..|...+
T Consensus 231 ~k~~~l-----~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g------------------------------------ 269 (456)
T PRK10590 231 RKRELL-----SQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDG------------------------------------ 269 (456)
T ss_pred HHHHHH-----HHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCC------------------------------------
Confidence 111111 122333345799999999999999999886543
Q ss_pred CCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCC
Q 000324 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (1665)
Q Consensus 794 ~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (1665)
..+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ |++|. +..+|+||+|||||
T Consensus 270 -~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~----~~~P~------~~~~yvqR~GRaGR 338 (456)
T PRK10590 270 -IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVN----YELPN------VPEDYVHRIGRTGR 338 (456)
T ss_pred -CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEE----eCCCC------CHHHhhhhcccccc
Confidence 23577899999999999999999999999999999999999999999999 99886 88999999999999
Q ss_pred CCCCCceEEEEEeCCCcHHHHH
Q 000324 874 PQYDSYGEGIIITGHSELRYYL 895 (1665)
Q Consensus 874 ~g~d~~G~~iil~~~~~~~~y~ 895 (1665)
.| ..|.|++++...+...+.
T Consensus 339 ~g--~~G~ai~l~~~~d~~~~~ 358 (456)
T PRK10590 339 AA--ATGEALSLVCVDEHKLLR 358 (456)
T ss_pred CC--CCeeEEEEecHHHHHHHH
Confidence 88 779999998887755443
No 20
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=8.6e-42 Score=432.80 Aligned_cols=346 Identities=21% Similarity=0.272 Sum_probs=259.0
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcc
Q 000324 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1665)
Q Consensus 481 ~Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (1665)
.||+.+...+ .||..|||+|.++++.++.+ +|++++||||||||++|++|++..+...... ......++++||++|
T Consensus 127 ~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g-~dviv~ApTGSGKTlayllPil~~l~~~~~~-~~~~~~~~~aLIL~P 204 (518)
T PLN00206 127 GLPPKLLLNLETAGYEFPTPIQMQAIPAALSG-RSLLVSADTGSGKTASFLVPIISRCCTIRSG-HPSEQRNPLAMVLTP 204 (518)
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CCEEEEecCCCCccHHHHHHHHHHHHhhccc-cccccCCceEEEEeC
Confidence 3677777777 68999999999999999876 5699999999999999999999887643211 111124679999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhh---hccccEEEeChhhH-HHHHhhcCCCccccceeEEEEecccc
Q 000324 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (1665)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (1665)
||+||.|+.+.++.+.+..++++..++|+.....+. ..+++|+|+||++| +.+.++ ...++++++|||||||+
T Consensus 205 TreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~---~~~l~~v~~lViDEad~ 281 (518)
T PLN00206 205 TRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKH---DIELDNVSVLVLDEVDC 281 (518)
T ss_pred CHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcC---CccchheeEEEeecHHH
Confidence 999999999999888777788888888887665542 34689999999998 555444 24678999999999999
Q ss_pred ccc-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCC-hHHHHHHHhccccCceEEecCCCcccc-ceEEEEeeecCc
Q 000324 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYRPVP-LSQQYIGIQVKK 711 (1665)
Q Consensus 635 l~d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n-~~dv~~~l~~~~~~~~~~f~~~~rpv~-l~~~~~~~~~~~ 711 (1665)
|.+ ++.+.+..++.. -+..|++++|||+++ .+.++.++..++ ..+.+....++.. +.+.+..+....
T Consensus 282 ml~~gf~~~i~~i~~~--------l~~~q~l~~SATl~~~v~~l~~~~~~~~--~~i~~~~~~~~~~~v~q~~~~~~~~~ 351 (518)
T PLN00206 282 MLERGFRDQVMQIFQA--------LSQPQVLLFSATVSPEVEKFASSLAKDI--ILISIGNPNRPNKAVKQLAIWVETKQ 351 (518)
T ss_pred HhhcchHHHHHHHHHh--------CCCCcEEEEEeeCCHHHHHHHHHhCCCC--EEEEeCCCCCCCcceeEEEEeccchh
Confidence 987 455554444332 246799999999986 345565554432 2333343344432 233333332221
Q ss_pred hhHHHHHHHHHHHHHHHHHhC-CCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhh
Q 000324 712 PLQRFQLMNDLCYEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790 (1665)
Q Consensus 712 ~~~~~~~~~~~~~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~ 790 (1665)
+... +++.+..... ..++||||+++..+..++..|....
T Consensus 352 ---k~~~----l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~--------------------------------- 391 (518)
T PLN00206 352 ---KKQK----LFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVT--------------------------------- 391 (518)
T ss_pred ---HHHH----HHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhcc---------------------------------
Confidence 1111 2222222111 4689999999999999888775421
Q ss_pred hhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcc
Q 000324 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGR 870 (1665)
Q Consensus 791 ~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GR 870 (1665)
...+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||+|. ++.+|+||+||
T Consensus 392 ---g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~----~d~P~------s~~~yihRiGR 458 (518)
T PLN00206 392 ---GLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVII----FDMPN------TIKEYIHQIGR 458 (518)
T ss_pred ---CcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEE----eCCCC------CHHHHHHhccc
Confidence 123677899999999999999999999999999999999999999999999 99886 89999999999
Q ss_pred cCCCCCCCceEEEEEeCCCcHHHHHH
Q 000324 871 AGRPQYDSYGEGIIITGHSELRYYLS 896 (1665)
Q Consensus 871 AGR~g~d~~G~~iil~~~~~~~~y~~ 896 (1665)
|||.| ..|.++++++.++...+..
T Consensus 459 aGR~g--~~G~ai~f~~~~~~~~~~~ 482 (518)
T PLN00206 459 ASRMG--EKGTAIVFVNEEDRNLFPE 482 (518)
T ss_pred cccCC--CCeEEEEEEchhHHHHHHH
Confidence 99988 7899999999877655443
No 21
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.9e-41 Score=426.85 Aligned_cols=336 Identities=21% Similarity=0.320 Sum_probs=261.2
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEccc
Q 000324 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1665)
Q Consensus 482 Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (1665)
|++++...+ .||.+|||+|.++++.++.+. |++++||||||||++|++|+++.+.... ...+++|++||
T Consensus 11 l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~-dvi~~a~TGsGKT~a~~lpil~~l~~~~--------~~~~~lil~Pt 81 (460)
T PRK11776 11 LPPALLANLNELGYTEMTPIQAQSLPAILAGK-DVIAQAKTGSGKTAAFGLGLLQKLDVKR--------FRVQALVLCPT 81 (460)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCC-CEEEECCCCCcHHHHHHHHHHHHhhhcc--------CCceEEEEeCC
Confidence 566666665 689999999999999998875 5999999999999999999999885431 24579999999
Q ss_pred HHHHHHHHHHHHHhhccC-CcEEEEEECCCcccHhh---hccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccc
Q 000324 560 KALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (1665)
Q Consensus 560 raLa~q~~~~~~~~~~~~-gi~V~~ltGd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l 635 (1665)
++||.|+++.++...... ++++..++|+.+...+. ...++|+|+||++|..+.++.. ..++++++||+||||++
T Consensus 82 reLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~--~~l~~l~~lViDEad~~ 159 (460)
T PRK11776 82 RELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGT--LDLDALNTLVLDEADRM 159 (460)
T ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCC--ccHHHCCEEEEECHHHH
Confidence 999999999998876544 78999999998875542 3478999999999855555432 45788999999999999
Q ss_pred cc-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCC-hHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchh
Q 000324 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713 (1665)
Q Consensus 636 ~d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n-~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~ 713 (1665)
.+ ++...++.++.. .+...|++++|||+|+ ...++..+...+ ..+.+........+.+.++.+....
T Consensus 160 l~~g~~~~l~~i~~~-------~~~~~q~ll~SAT~~~~~~~l~~~~~~~~--~~i~~~~~~~~~~i~~~~~~~~~~~-- 228 (460)
T PRK11776 160 LDMGFQDAIDAIIRQ-------APARRQTLLFSATYPEGIAAISQRFQRDP--VEVKVESTHDLPAIEQRFYEVSPDE-- 228 (460)
T ss_pred hCcCcHHHHHHHHHh-------CCcccEEEEEEecCcHHHHHHHHHhcCCC--EEEEECcCCCCCCeeEEEEEeCcHH--
Confidence 87 567766666554 4667899999999985 233333332222 1233333333344666666544322
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhc
Q 000324 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (1665)
Q Consensus 714 ~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll 793 (1665)
+...+.. ++......++||||+|++.+..++..|...+
T Consensus 229 -k~~~l~~-----ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~------------------------------------ 266 (460)
T PRK11776 229 -RLPALQR-----LLLHHQPESCVVFCNTKKECQEVADALNAQG------------------------------------ 266 (460)
T ss_pred -HHHHHHH-----HHHhcCCCceEEEECCHHHHHHHHHHHHhCC------------------------------------
Confidence 2332222 2233446789999999999999999987643
Q ss_pred CCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCC
Q 000324 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (1665)
Q Consensus 794 ~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (1665)
..+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ |+.+. +..+|+||+|||||
T Consensus 267 -~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~----~d~p~------~~~~yiqR~GRtGR 335 (460)
T PRK11776 267 -FSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVIN----YELAR------DPEVHVHRIGRTGR 335 (460)
T ss_pred -CcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEE----ecCCC------CHhHhhhhcccccC
Confidence 34678899999999999999999999999999999999999999999999 88775 78899999999999
Q ss_pred CCCCCceEEEEEeCCCcHHHH
Q 000324 874 PQYDSYGEGIIITGHSELRYY 894 (1665)
Q Consensus 874 ~g~d~~G~~iil~~~~~~~~y 894 (1665)
.| ..|.|+.++++.+...+
T Consensus 336 ~g--~~G~ai~l~~~~e~~~~ 354 (460)
T PRK11776 336 AG--SKGLALSLVAPEEMQRA 354 (460)
T ss_pred CC--CcceEEEEEchhHHHHH
Confidence 88 77999999998775543
No 22
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.9e-41 Score=422.40 Aligned_cols=345 Identities=15% Similarity=0.205 Sum_probs=255.4
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEccc
Q 000324 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1665)
Q Consensus 482 Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (1665)
|++++...+ .||..|+|+|+++++.++.+. |++++||||||||++|++|+++.+.......+ ....++++||++||
T Consensus 15 l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~-dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~-~~~~~~~~lil~Pt 92 (423)
T PRK04837 15 LHPQVVEALEKKGFHNCTPIQALALPLTLAGR-DVAGQAQTGTGKTMAFLTATFHYLLSHPAPED-RKVNQPRALIMAPT 92 (423)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-cEEEECCCCchHHHHHHHHHHHHHHhcccccc-cccCCceEEEECCc
Confidence 566666666 689999999999999998775 59999999999999999999998876432111 11235799999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhh---hccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccc
Q 000324 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (1665)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (1665)
++||.|+++.+..+....|+++..++|+.....+. ..+++|+|+||+++..+.+... ..++++++|||||||++.
T Consensus 93 reLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~--~~l~~v~~lViDEad~l~ 170 (423)
T PRK04837 93 RELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNH--INLGAIQVVVLDEADRMF 170 (423)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCC--cccccccEEEEecHHHHh
Confidence 99999999999998888899999999987765432 2468999999999744444332 457889999999999998
Q ss_pred c-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChH-HHH-HHHhccccCceEEecCCC-ccccceEEEEeeecCch
Q 000324 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYE-DVA-LFLRVNLEKGLFYFDNSY-RPVPLSQQYIGIQVKKP 712 (1665)
Q Consensus 637 d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~-dv~-~~l~~~~~~~~~~f~~~~-rpv~l~~~~~~~~~~~~ 712 (1665)
+ ++...++.++.++ . .....+.+++|||++... .+. .++. ++ ..+...+.. ....+.+.++... .
T Consensus 171 ~~~f~~~i~~i~~~~----~-~~~~~~~~l~SAT~~~~~~~~~~~~~~-~p--~~i~v~~~~~~~~~i~~~~~~~~---~ 239 (423)
T PRK04837 171 DLGFIKDIRWLFRRM----P-PANQRLNMLFSATLSYRVRELAFEHMN-NP--EYVEVEPEQKTGHRIKEELFYPS---N 239 (423)
T ss_pred hcccHHHHHHHHHhC----C-CccceeEEEEeccCCHHHHHHHHHHCC-CC--EEEEEcCCCcCCCceeEEEEeCC---H
Confidence 7 5655655554433 1 123456789999998521 221 2222 11 112222221 1222333322111 1
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhh
Q 000324 713 LQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDL 792 (1665)
Q Consensus 713 ~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~l 792 (1665)
..+...+. . +.......++||||+++..|..++..|...+
T Consensus 240 ~~k~~~l~----~-ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g----------------------------------- 279 (423)
T PRK04837 240 EEKMRLLQ----T-LIEEEWPDRAIIFANTKHRCEEIWGHLAADG----------------------------------- 279 (423)
T ss_pred HHHHHHHH----H-HHHhcCCCeEEEEECCHHHHHHHHHHHHhCC-----------------------------------
Confidence 12222221 2 2222336799999999999999999887543
Q ss_pred cCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccC
Q 000324 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (1665)
Q Consensus 793 l~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAG 872 (1665)
+.+.++||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+ ||+|. +..+|+||+||||
T Consensus 280 --~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~----~d~P~------s~~~yiqR~GR~g 347 (423)
T PRK04837 280 --HRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFN----YDLPD------DCEDYVHRIGRTG 347 (423)
T ss_pred --CcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEE----eCCCC------chhheEecccccc
Confidence 34788899999999999999999999999999999999999999999999 88886 8899999999999
Q ss_pred CCCCCCceEEEEEeCCCcHHHHH
Q 000324 873 RPQYDSYGEGIIITGHSELRYYL 895 (1665)
Q Consensus 873 R~g~d~~G~~iil~~~~~~~~y~ 895 (1665)
|.| ..|.|+.|.++.+...+.
T Consensus 348 R~G--~~G~ai~~~~~~~~~~~~ 368 (423)
T PRK04837 348 RAG--ASGHSISLACEEYALNLP 368 (423)
T ss_pred CCC--CCeeEEEEeCHHHHHHHH
Confidence 998 789999999887654443
No 23
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.9e-41 Score=428.89 Aligned_cols=344 Identities=17% Similarity=0.238 Sum_probs=259.1
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcc
Q 000324 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1665)
Q Consensus 481 ~Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (1665)
.+|+++...+ .||.+|+|+|.+++|.++.+. ++|++||||||||++|++|++..+....... ...++.+|||+|
T Consensus 136 ~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~-dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~---~~~gp~~LIL~P 211 (545)
T PTZ00110 136 SFPDYILKSLKNAGFTEPTPIQVQGWPIALSGR-DMIGIAETGSGKTLAFLLPAIVHINAQPLLR---YGDGPIVLVLAP 211 (545)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCC-CEEEEeCCCChHHHHHHHHHHHHHHhccccc---CCCCcEEEEECC
Confidence 4678777777 689999999999999998875 5999999999999999999998876532110 123578999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhh---hccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccc
Q 000324 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (1665)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l 635 (1665)
||+||.|+.+.+.++....++++..++|+.....+. ...++|+|+||+++..++.... ..+.++++|||||||++
T Consensus 212 TreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~--~~l~~v~~lViDEAd~m 289 (545)
T PTZ00110 212 TRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNV--TNLRRVTYLVLDEADRM 289 (545)
T ss_pred hHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCC--CChhhCcEEEeehHHhh
Confidence 999999999999998777789999999988765442 3478999999999743333332 46788999999999999
Q ss_pred cc-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCC-hHHHHHHHhccccCceEEecCCCc---cccceEEEEeeecC
Q 000324 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYR---PVPLSQQYIGIQVK 710 (1665)
Q Consensus 636 ~d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n-~~dv~~~l~~~~~~~~~~f~~~~r---pv~l~~~~~~~~~~ 710 (1665)
.+ ++.+.+..++.. ..+..|++++|||+|. .+.++..+... ..+........ ...+.+.+..+...
T Consensus 290 ld~gf~~~i~~il~~-------~~~~~q~l~~SAT~p~~v~~l~~~l~~~--~~v~i~vg~~~l~~~~~i~q~~~~~~~~ 360 (545)
T PTZ00110 290 LDMGFEPQIRKIVSQ-------IRPDRQTLMWSATWPKEVQSLARDLCKE--EPVHVNVGSLDLTACHNIKQEVFVVEEH 360 (545)
T ss_pred hhcchHHHHHHHHHh-------CCCCCeEEEEEeCCCHHHHHHHHHHhcc--CCEEEEECCCccccCCCeeEEEEEEech
Confidence 87 566666555543 3567899999999985 33444443321 11211111111 11233444333322
Q ss_pred chhHHHHHHHHHHHHHHHHHh-CCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchh
Q 000324 711 KPLQRFQLMNDLCYEKVVAVA-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (1665)
Q Consensus 711 ~~~~~~~~~~~~~~~~i~~~~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l 789 (1665)
. +...+..+ +.... ...++||||++++.|..++..|...+
T Consensus 361 ~---k~~~L~~l----l~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g-------------------------------- 401 (545)
T PTZ00110 361 E---KRGKLKML----LQRIMRDGDKILIFVETKKGADFLTKELRLDG-------------------------------- 401 (545)
T ss_pred h---HHHHHHHH----HHHhcccCCeEEEEecChHHHHHHHHHHHHcC--------------------------------
Confidence 1 22222222 11222 46799999999999999999887543
Q ss_pred hhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhc
Q 000324 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLG 869 (1665)
Q Consensus 790 ~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~G 869 (1665)
+.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||+|. ++.+|+||+|
T Consensus 402 -----~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~----~d~P~------s~~~yvqRiG 466 (545)
T PTZ00110 402 -----WPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVIN----FDFPN------QIEDYVHRIG 466 (545)
T ss_pred -----CcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEE----eCCCC------CHHHHHHHhc
Confidence 23466799999999999999999999999999999999999999999999 99887 8999999999
Q ss_pred ccCCCCCCCceEEEEEeCCCcHHHHH
Q 000324 870 RAGRPQYDSYGEGIIITGHSELRYYL 895 (1665)
Q Consensus 870 RAGR~g~d~~G~~iil~~~~~~~~y~ 895 (1665)
||||.| ..|.|++++++.+.....
T Consensus 467 RtGR~G--~~G~ai~~~~~~~~~~~~ 490 (545)
T PTZ00110 467 RTGRAG--AKGASYTFLTPDKYRLAR 490 (545)
T ss_pred ccccCC--CCceEEEEECcchHHHHH
Confidence 999988 789999999987765443
No 24
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-42 Score=394.12 Aligned_cols=339 Identities=22% Similarity=0.346 Sum_probs=273.6
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000324 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1665)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (1665)
||..|+|||..+||.++.+.+ ++.||-||||||.+|++|+|..+.-.+.. ....++|+++|||+|+.|++...+
T Consensus 200 Gy~~PTpIQ~a~IPvallgkD-Ica~A~TGsGKTAAF~lPiLERLlYrPk~-----~~~TRVLVL~PTRELaiQv~sV~~ 273 (691)
T KOG0338|consen 200 GYKKPTPIQVATIPVALLGKD-ICACAATGSGKTAAFALPILERLLYRPKK-----VAATRVLVLVPTRELAIQVHSVTK 273 (691)
T ss_pred CCCCCCchhhhcccHHhhcch-hhheecccCCchhhhHHHHHHHHhcCccc-----CcceeEEEEeccHHHHHHHHHHHH
Confidence 999999999999999999877 99999999999999999999988654322 235689999999999999999999
Q ss_pred HhhccCCcEEEEEECCCcccHhh---hccccEEEeChhhH-HHHHhhcCCCccccceeEEEEeccccccc-CCchHHHHH
Q 000324 572 NRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESI 646 (1665)
Q Consensus 572 ~~~~~~gi~V~~ltGd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~i 646 (1665)
++.....|.|+.+.||.++..+. ...++|+|+||++| |++ |++.. ..++++.++|+|||++|++ .|...+..|
T Consensus 274 qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHl-rNs~s-f~ldsiEVLvlDEADRMLeegFademnEi 351 (691)
T KOG0338|consen 274 QLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHL-RNSPS-FNLDSIEVLVLDEADRMLEEGFADEMNEI 351 (691)
T ss_pred HHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHh-ccCCC-ccccceeEEEechHHHHHHHHHHHHHHHH
Confidence 99888899999999999987764 36899999999997 555 44433 5789999999999999987 465555554
Q ss_pred HHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEe--cCCCccccceEEEEeeecCchhHHHHHHHHHHH
Q 000324 647 VARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYF--DNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCY 724 (1665)
Q Consensus 647 v~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f--~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1665)
+. ..+.+.|.++||||++ +.|.........+++-.| .+..++..|.|.|+.+.......+-..+..+
T Consensus 352 i~-------lcpk~RQTmLFSATMt--eeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l-- 420 (691)
T KOG0338|consen 352 IR-------LCPKNRQTMLFSATMT--EEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASL-- 420 (691)
T ss_pred HH-------hccccccceeehhhhH--HHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHH--
Confidence 43 3577899999999997 455555555544554443 4455666788888877765443332222221
Q ss_pred HHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCC
Q 000324 725 EKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGM 804 (1665)
Q Consensus 725 ~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm 804 (1665)
+.... ...+||||.|++.|.++--.|--.+.. ++-+||.|
T Consensus 421 --~~rtf-~~~~ivFv~tKk~AHRl~IllGLlgl~-------------------------------------agElHGsL 460 (691)
T KOG0338|consen 421 --ITRTF-QDRTIVFVRTKKQAHRLRILLGLLGLK-------------------------------------AGELHGSL 460 (691)
T ss_pred --HHHhc-ccceEEEEehHHHHHHHHHHHHHhhch-------------------------------------hhhhcccc
Confidence 22222 467999999999999887766555433 44559999
Q ss_pred CHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEE
Q 000324 805 TRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGII 884 (1665)
Q Consensus 805 ~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~ii 884 (1665)
++.+|...++.|+++.++|||||++++||+|++++.+||+ |+.|. +...|+||+||+.|+| +.|.+|.
T Consensus 461 tQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVIN----y~mP~------t~e~Y~HRVGRTARAG--RaGrsVt 528 (691)
T KOG0338|consen 461 TQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVIN----YAMPK------TIEHYLHRVGRTARAG--RAGRSVT 528 (691)
T ss_pred cHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEe----ccCch------hHHHHHHHhhhhhhcc--cCcceEE
Confidence 9999999999999999999999999999999999999999 98887 8999999999999998 8899999
Q ss_pred EeCCCcHHHHHHhhcCC
Q 000324 885 ITGHSELRYYLSLMNQQ 901 (1665)
Q Consensus 885 l~~~~~~~~y~~ll~~~ 901 (1665)
++..++...++..+...
T Consensus 529 lvgE~dRkllK~iik~~ 545 (691)
T KOG0338|consen 529 LVGESDRKLLKEIIKSS 545 (691)
T ss_pred EeccccHHHHHHHHhhh
Confidence 99999888777666553
No 25
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2.7e-42 Score=408.59 Aligned_cols=404 Identities=26% Similarity=0.386 Sum_probs=313.9
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (1665)
+|-|+|+.++.+ +..++++||+|-|.+|||.+|..+|...+.. +.++||..|.|||.+|.|+++...|
T Consensus 129 ~LDpFQ~~aI~C-idr~eSVLVSAHTSAGKTVVAeYAIA~sLr~-----------kQRVIYTSPIKALSNQKYREl~~EF 196 (1041)
T KOG0948|consen 129 TLDPFQSTAIKC-IDRGESVLVSAHTSAGKTVVAEYAIAMSLRE-----------KQRVIYTSPIKALSNQKYRELLEEF 196 (1041)
T ss_pred ccCchHhhhhhh-hcCCceEEEEeecCCCcchHHHHHHHHHHHh-----------cCeEEeeChhhhhcchhHHHHHHHh
Confidence 788999999986 5777899999999999999999999999865 3489999999999999999998877
Q ss_pred ccCCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc-CCchHHHHHHHHHHHH
Q 000324 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQ 653 (1665)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~r~~~~ 653 (1665)
+ .|+..|||..++. .+.-+|+|.|-|..++-+.. ..+..|.+||+||+|.|-| +||.++|.-+--
T Consensus 197 ~----DVGLMTGDVTInP----~ASCLVMTTEILRsMLYRGS--EvmrEVaWVIFDEIHYMRDkERGVVWEETIIl---- 262 (1041)
T KOG0948|consen 197 K----DVGLMTGDVTINP----DASCLVMTTEILRSMLYRGS--EVMREVAWVIFDEIHYMRDKERGVVWEETIIL---- 262 (1041)
T ss_pred c----ccceeecceeeCC----CCceeeeHHHHHHHHHhccc--hHhheeeeEEeeeehhccccccceeeeeeEEe----
Confidence 6 5889999999876 47789999998865555544 4678899999999999999 899999865432
Q ss_pred HhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEe---------eecCchh--HHH-HHHHH
Q 000324 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIG---------IQVKKPL--QRF-QLMND 721 (1665)
Q Consensus 654 ~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~---------~~~~~~~--~~~-~~~~~ 721 (1665)
++.++|.|+||||+||+.++|+|+..-...++.++...|||.||+++++. ++++... ..+ .+|..
T Consensus 263 ---lP~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~ 339 (1041)
T KOG0948|consen 263 ---LPDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSV 339 (1041)
T ss_pred ---ccccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHH
Confidence 58899999999999999999999987777889999999999999877543 2222111 111 11110
Q ss_pred ------------------------------HHHHHHHHHh--CCCeEEEEecChhHHHHHHHHHHHHhhhcccccccccc
Q 000324 722 ------------------------------LCYEKVVAVA--GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKE 769 (1665)
Q Consensus 722 ------------------------------~~~~~i~~~~--~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~ 769 (1665)
-+|..+.... ...|+|||+-|+++|+..|..+.+...+.+.-.
T Consensus 340 l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk----- 414 (1041)
T KOG0948|consen 340 LRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEK----- 414 (1041)
T ss_pred hhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHH-----
Confidence 1222222222 246999999999999999999887765532110
Q ss_pred CchhHHHHHhhhhcc--------ccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEE
Q 000324 770 DSVSREILQSHTDMV--------KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTV 841 (1665)
Q Consensus 770 ~~~~~~~l~~~~~~~--------~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~v 841 (1665)
..-.++........ +-..+-.++..|||+||+||-+--++.|+-+|.+|.++||+||-|++.|+|.||.+|
T Consensus 415 -~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTV 493 (1041)
T KOG0948|consen 415 -ELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTV 493 (1041)
T ss_pred -HHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeE
Confidence 11112222222222 223455678899999999999999999999999999999999999999999999999
Q ss_pred EEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcH-HHHHHhh-cCCCccccchhHhhHHHHHHH
Q 000324 842 IIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL-RYYLSLM-NQQLPIESQFVSKLADQLNAE 919 (1665)
Q Consensus 842 VI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~-~~y~~ll-~~~~piES~l~~~l~d~lnae 919 (1665)
|+.....||+.. +.|+|.-+|+||.|||||.|.|..|.+|++.+..-- +.-..++ ++.-|+-|.|+-.....||--
T Consensus 494 vFT~~rKfDG~~--fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~aD~LnSaFhLtYnMiLNLl 571 (1041)
T KOG0948|consen 494 VFTAVRKFDGKK--FRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGSADPLNSAFHLTYNMILNLL 571 (1041)
T ss_pred EEeeccccCCcc--eeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcCCCcchhhhhhhHHHHHHHHH
Confidence 999989999886 667899999999999999999999999999988543 3444444 556789999988777777765
Q ss_pred HHhccccChHHHHHHHHhhHH
Q 000324 920 IVLGTVQNAKEACNWIGYTYL 940 (1665)
Q Consensus 920 I~~g~i~~~~~~~~wl~~t~~ 940 (1665)
-+.|.- . -..|..+|+
T Consensus 572 RvEei~--p---e~~l~~SF~ 587 (1041)
T KOG0948|consen 572 RVEEIS--P---EYMLERSFH 587 (1041)
T ss_pred HHccCC--H---HHHHHHHHH
Confidence 554431 1 234555655
No 26
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=8.8e-41 Score=425.60 Aligned_cols=345 Identities=15% Similarity=0.208 Sum_probs=256.7
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEccc
Q 000324 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1665)
Q Consensus 482 Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (1665)
|++++...+ .||..|||+|.++|+.++.+.+ ++++||||||||++|++|+++.+....... ......+++|||+||
T Consensus 16 l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~D-vi~~ApTGSGKTlafllpil~~l~~~~~~~-~~~~~~~raLIl~PT 93 (572)
T PRK04537 16 LHPALLAGLESAGFTRCTPIQALTLPVALPGGD-VAGQAQTGTGKTLAFLVAVMNRLLSRPALA-DRKPEDPRALILAPT 93 (572)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCC-EEEEcCCCCcHHHHHHHHHHHHHHhccccc-ccccCCceEEEEeCc
Confidence 566666666 7899999999999999988754 999999999999999999999886532110 001125789999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhh---hccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccc
Q 000324 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (1665)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (1665)
++||.|+++.+.++....++++..++|+.....+. ...++|||+||++|..+.+... ...+..+++|||||||++.
T Consensus 94 reLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~-~~~l~~v~~lViDEAh~ll 172 (572)
T PRK04537 94 RELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHK-VVSLHACEICVLDEADRMF 172 (572)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhcc-ccchhheeeeEecCHHHHh
Confidence 99999999999998888899999999998766542 2467999999999744444322 1347789999999999998
Q ss_pred c-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCCh-HH-HHHHHhccccCceEEecCCCccccceEEEEeeecCchh
Q 000324 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY-ED-VALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713 (1665)
Q Consensus 637 d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~-~d-v~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~ 713 (1665)
+ .+...++.++.++. .....|++++|||+++. .. ...++.. + ..+...........+.+.++... ..
T Consensus 173 d~gf~~~i~~il~~lp-----~~~~~q~ll~SATl~~~v~~l~~~~l~~-p-~~i~v~~~~~~~~~i~q~~~~~~---~~ 242 (572)
T PRK04537 173 DLGFIKDIRFLLRRMP-----ERGTRQTLLFSATLSHRVLELAYEHMNE-P-EKLVVETETITAARVRQRIYFPA---DE 242 (572)
T ss_pred hcchHHHHHHHHHhcc-----cccCceEEEEeCCccHHHHHHHHHHhcC-C-cEEEeccccccccceeEEEEecC---HH
Confidence 7 56666666655442 12367999999999852 12 2233322 1 11222122222233344433222 11
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhc
Q 000324 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (1665)
Q Consensus 714 ~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll 793 (1665)
.+...+. .++....+.++||||+|+..++.++..|...+
T Consensus 243 ~k~~~L~-----~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g------------------------------------ 281 (572)
T PRK04537 243 EKQTLLL-----GLLSRSEGARTMVFVNTKAFVERVARTLERHG------------------------------------ 281 (572)
T ss_pred HHHHHHH-----HHHhcccCCcEEEEeCCHHHHHHHHHHHHHcC------------------------------------
Confidence 2222211 12233346799999999999999999887543
Q ss_pred CCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCC
Q 000324 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (1665)
Q Consensus 794 ~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (1665)
+.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||.+. +..+|+||+|||||
T Consensus 282 -~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VIn----yd~P~------s~~~yvqRiGRaGR 350 (572)
T PRK04537 282 -YRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYN----YDLPF------DAEDYVHRIGRTAR 350 (572)
T ss_pred -CCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEE----cCCCC------CHHHHhhhhccccc
Confidence 34788999999999999999999999999999999999999999999999 88775 89999999999999
Q ss_pred CCCCCceEEEEEeCCCcHHH
Q 000324 874 PQYDSYGEGIIITGHSELRY 893 (1665)
Q Consensus 874 ~g~d~~G~~iil~~~~~~~~ 893 (1665)
.| ..|.|++++++.+...
T Consensus 351 ~G--~~G~ai~~~~~~~~~~ 368 (572)
T PRK04537 351 LG--EEGDAISFACERYAMS 368 (572)
T ss_pred CC--CCceEEEEecHHHHHH
Confidence 98 6899999998765443
No 27
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.5e-40 Score=416.21 Aligned_cols=343 Identities=22% Similarity=0.283 Sum_probs=261.5
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcc
Q 000324 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1665)
Q Consensus 481 ~Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (1665)
.|++.+...+ .||..|+++|.++++.++++. +++++||||+|||++|++|+++.+....... ....++||++|
T Consensus 7 ~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~-d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~----~~~~~~lil~P 81 (434)
T PRK11192 7 ELDESLLEALQDKGYTRPTAIQAEAIPPALDGR-DVLGSAPTGTGKTAAFLLPALQHLLDFPRRK----SGPPRILILTP 81 (434)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-CEEEECCCCChHHHHHHHHHHHHHhhccccC----CCCceEEEECC
Confidence 3566666676 789999999999999999875 5999999999999999999999887542211 13568999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhh---hccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccc
Q 000324 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (1665)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l 635 (1665)
|++||.|+++.+..+....++++..++|+.....+. ...++|+|+||+++..+..+.. ..++.+++|||||||++
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~--~~~~~v~~lViDEah~~ 159 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEEN--FDCRAVETLILDEADRM 159 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC--cCcccCCEEEEECHHHH
Confidence 999999999999998888899999999998765542 3468999999999743433322 34678999999999999
Q ss_pred cc-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCC--hHHHHHHHhccccCceEEecCCCccc-cceEEEEeeecCc
Q 000324 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFDNSYRPV-PLSQQYIGIQVKK 711 (1665)
Q Consensus 636 ~d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n--~~dv~~~l~~~~~~~~~~f~~~~rpv-~l~~~~~~~~~~~ 711 (1665)
.+ +++..++.+... .+...|+++||||++. ..++..++...+. .+...+..+.. .+.+.+.....
T Consensus 160 l~~~~~~~~~~i~~~-------~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~i~~~~~~~~~-- 228 (434)
T PRK11192 160 LDMGFAQDIETIAAE-------TRWRKQTLLFSATLEGDAVQDFAERLLNDPV--EVEAEPSRRERKKIHQWYYRADD-- 228 (434)
T ss_pred hCCCcHHHHHHHHHh-------CccccEEEEEEeecCHHHHHHHHHHHccCCE--EEEecCCcccccCceEEEEEeCC--
Confidence 87 577777665543 3456799999999974 4566666654431 12222222221 22233222211
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhh
Q 000324 712 PLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (1665)
Q Consensus 712 ~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 791 (1665)
...+... +. .+.......++||||+++..+..++..|...+
T Consensus 229 ~~~k~~~----l~-~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~---------------------------------- 269 (434)
T PRK11192 229 LEHKTAL----LC-HLLKQPEVTRSIVFVRTRERVHELAGWLRKAG---------------------------------- 269 (434)
T ss_pred HHHHHHH----HH-HHHhcCCCCeEEEEeCChHHHHHHHHHHHhCC----------------------------------
Confidence 1112221 22 22333346799999999999999999887632
Q ss_pred hcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhccc
Q 000324 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871 (1665)
Q Consensus 792 ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRA 871 (1665)
..+.++||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||++. |..+|+||+|||
T Consensus 270 ---~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~----~d~p~------s~~~yiqr~GR~ 336 (434)
T PRK11192 270 ---INCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVIN----FDMPR------SADTYLHRIGRT 336 (434)
T ss_pred ---CCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEE----ECCCC------CHHHHhhccccc
Confidence 23678899999999999999999999999999999999999999999999 88876 899999999999
Q ss_pred CCCCCCCceEEEEEeCCCcHHHHH
Q 000324 872 GRPQYDSYGEGIIITGHSELRYYL 895 (1665)
Q Consensus 872 GR~g~d~~G~~iil~~~~~~~~y~ 895 (1665)
||.| ..|.|+++++..+...+.
T Consensus 337 gR~g--~~g~ai~l~~~~d~~~~~ 358 (434)
T PRK11192 337 GRAG--RKGTAISLVEAHDHLLLG 358 (434)
T ss_pred ccCC--CCceEEEEecHHHHHHHH
Confidence 9987 779999999876655443
No 28
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=3.6e-40 Score=421.85 Aligned_cols=327 Identities=21% Similarity=0.274 Sum_probs=246.1
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
.|+..|+|+|.++|+.++.+.+ +|+++|||+|||+||++|++.. ...+|||+|+++|+.+++..+
T Consensus 456 FG~~sFRp~Q~eaI~aiL~GrD-VLVimPTGSGKSLcYQLPAL~~--------------~GiTLVISPLiSLmqDQV~~L 520 (1195)
T PLN03137 456 FGNHSFRPNQREIINATMSGYD-VFVLMPTGGGKSLTYQLPALIC--------------PGITLVISPLVSLIQDQIMNL 520 (1195)
T ss_pred cCCCCCCHHHHHHHHHHHcCCC-EEEEcCCCccHHHHHHHHHHHc--------------CCcEEEEeCHHHHHHHHHHHH
Confidence 3899999999999999988755 9999999999999999999853 236999999999999887776
Q ss_pred HHhhccCCcEEEEEECCCcccHhh-----h----ccccEEEeChhhH---HHHHhhcCCCccccceeEEEEeccccccc-
Q 000324 571 SNRLQMYDVKVRELSGDQTLTRQQ-----I----EETQIIVTTPEKW---DIITRKSGDRTYTQLVKLLIIDEIHLLHD- 637 (1665)
Q Consensus 571 ~~~~~~~gi~V~~ltGd~~~~~~~-----~----~~~~IiV~TPekl---d~l~r~~~~~~~l~~v~liIiDEaH~l~d- 637 (1665)
.. .|+.+..+.|+.....+. . ...+|+|+|||++ +.+.+..........+.+|||||||++.+
T Consensus 521 ~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqW 596 (1195)
T PLN03137 521 LQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQW 596 (1195)
T ss_pred Hh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhc
Confidence 54 489999999988765432 1 4679999999997 34454433222345589999999999976
Q ss_pred --CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCC--hHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchh
Q 000324 638 --NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713 (1665)
Q Consensus 638 --~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n--~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~ 713 (1665)
++.+.+..+ ..+ ....+.+++++||||++. .+++...|+.. . ...|..++....+. |..+. +. .
T Consensus 597 GhDFRpdYr~L-~~L----r~~fp~vPilALTATAT~~V~eDI~~~L~l~--~-~~vfr~Sf~RpNL~--y~Vv~-k~-k 664 (1195)
T PLN03137 597 GHDFRPDYQGL-GIL----KQKFPNIPVLALTATATASVKEDVVQALGLV--N-CVVFRQSFNRPNLW--YSVVP-KT-K 664 (1195)
T ss_pred ccchHHHHHHH-HHH----HHhCCCCCeEEEEecCCHHHHHHHHHHcCCC--C-cEEeecccCccceE--EEEec-cc-h
Confidence 255555432 111 123457889999999985 45677777643 2 23344443332332 22122 11 1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhc
Q 000324 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (1665)
Q Consensus 714 ~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll 793 (1665)
..... +...+.....+.+.||||+||++|+.++..|...+
T Consensus 665 k~le~----L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~G------------------------------------ 704 (1195)
T PLN03137 665 KCLED----IDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFG------------------------------------ 704 (1195)
T ss_pred hHHHH----HHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCC------------------------------------
Confidence 11111 22222222235679999999999999999987643
Q ss_pred CCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCC
Q 000324 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (1665)
Q Consensus 794 ~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (1665)
..+++|||||++.+|..+++.|..|.++|||||++++||||+|+|++||+ |+.|. |+.+|+||+|||||
T Consensus 705 -ika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIH----ydlPk------SiEsYyQriGRAGR 773 (1195)
T PLN03137 705 -HKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH----HSLPK------SIEGYHQECGRAGR 773 (1195)
T ss_pred -CCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEE----cCCCC------CHHHHHhhhcccCC
Confidence 34678899999999999999999999999999999999999999999999 99887 89999999999999
Q ss_pred CCCCCceEEEEEeCCCcHHHHHHhhcCC
Q 000324 874 PQYDSYGEGIIITGHSELRYYLSLMNQQ 901 (1665)
Q Consensus 874 ~g~d~~G~~iil~~~~~~~~y~~ll~~~ 901 (1665)
.| ..|.|+++++..+...+..++.+.
T Consensus 774 DG--~~g~cILlys~~D~~~~~~lI~~~ 799 (1195)
T PLN03137 774 DG--QRSSCVLYYSYSDYIRVKHMISQG 799 (1195)
T ss_pred CC--CCceEEEEecHHHHHHHHHHHhcc
Confidence 98 789999999988877777776543
No 29
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=3.2e-41 Score=387.80 Aligned_cols=350 Identities=21% Similarity=0.329 Sum_probs=274.9
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEccc
Q 000324 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1665)
Q Consensus 482 Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (1665)
|.+...+++ .||.++|++|+++++.++.+. ++++.|-||+|||++|++|+++.+.+.+... ..+..+++|+||
T Consensus 89 LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gk-Dvl~~AKTGtGKTlAFLiPaie~l~k~~~~~----r~~~~vlIi~PT 163 (543)
T KOG0342|consen 89 LSPLTLKAIKEMGFETMTPVQQKTIPPLLEGK-DVLAAAKTGTGKTLAFLLPAIELLRKLKFKP----RNGTGVLIICPT 163 (543)
T ss_pred cCHHHHHHHHhcCccchhHHHHhhcCccCCCc-cceeeeccCCCceeeehhHHHHHHHhcccCC----CCCeeEEEeccc
Confidence 444555555 799999999999999999887 5999999999999999999999998765432 257789999999
Q ss_pred HHHHHHHHHHHHHhhccC-CcEEEEEECCCcccHhh---hccccEEEeChhhH-HHHHhhcCCCccccceeEEEEecccc
Q 000324 560 KALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (1665)
Q Consensus 560 raLa~q~~~~~~~~~~~~-gi~V~~ltGd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (1665)
|+||.|++...+++++.. ++.|+.+.|+....... ...++|+|+||++| |++.+... ....+++++|+||||+
T Consensus 164 RELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~--f~~r~~k~lvlDEADr 241 (543)
T KOG0342|consen 164 RELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSG--FLFRNLKCLVLDEADR 241 (543)
T ss_pred HHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCc--chhhccceeEeecchh
Confidence 999999999999999877 89999999999876542 34899999999997 66666555 5667789999999999
Q ss_pred ccc-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccC-ceEE-ecCCCccc---cceEEEEeee
Q 000324 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEK-GLFY-FDNSYRPV---PLSQQYIGIQ 708 (1665)
Q Consensus 635 l~d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~-~~~~-f~~~~rpv---~l~~~~~~~~ 708 (1665)
+++ +|...++.|+.-+ +...|.+++|||.|. .|.+..+..... .+|. ......+. .+.|-|+..+
T Consensus 242 lLd~GF~~di~~Ii~~l-------pk~rqt~LFSAT~~~--kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~ 312 (543)
T KOG0342|consen 242 LLDIGFEEDVEQIIKIL-------PKQRQTLLFSATQPS--KVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAP 312 (543)
T ss_pred hhhcccHHHHHHHHHhc-------cccceeeEeeCCCcH--HHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEecc
Confidence 999 7877777777643 678899999999985 333333332222 2222 22222222 3445444333
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccch
Q 000324 709 VKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSND 788 (1665)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 788 (1665)
.. .++. .+|..+.++....++||||+|...+...+..|.....
T Consensus 313 ~~---~~f~----ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dl------------------------------ 355 (543)
T KOG0342|consen 313 SD---SRFS----LLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDL------------------------------ 355 (543)
T ss_pred cc---chHH----HHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCC------------------------------
Confidence 22 2222 3455556666568999999999999999988874332
Q ss_pred hhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhh
Q 000324 789 LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQML 868 (1665)
Q Consensus 789 l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~ 868 (1665)
.|..+||++++..|..+...|++.+--|||||+++|||+|+|+|++||+ |++|+ .+.+|+||+
T Consensus 356 -------pv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ----~~~P~------d~~~YIHRv 418 (543)
T KOG0342|consen 356 -------PVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQ----YDPPS------DPEQYIHRV 418 (543)
T ss_pred -------chhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEE----eCCCC------CHHHHHHHh
Confidence 2444599999999999999999999999999999999999999999999 99998 899999999
Q ss_pred cccCCCCCCCceEEEEEeCCCcHHHHHHhhcCCCccc
Q 000324 869 GRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIE 905 (1665)
Q Consensus 869 GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~piE 905 (1665)
||+||.| +.|+++++..++++.++..+- .+|++
T Consensus 419 GRTaR~g--k~G~alL~l~p~El~Flr~LK--~lpl~ 451 (543)
T KOG0342|consen 419 GRTAREG--KEGKALLLLAPWELGFLRYLK--KLPLE 451 (543)
T ss_pred ccccccC--CCceEEEEeChhHHHHHHHHh--hCCCc
Confidence 9999977 899999999999987765543 45544
No 30
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=2.4e-40 Score=442.18 Aligned_cols=400 Identities=21% Similarity=0.273 Sum_probs=267.7
Q ss_pred EEccCCCchHHHHHHHHHHHHHhcCCCC--CCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc------------cCCcEE
Q 000324 516 LCAPTGAGKTNVAVLTILQQLALNRNDD--GSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ------------MYDVKV 581 (1665)
Q Consensus 516 v~APTGsGKT~~a~l~il~~l~~~~~~~--g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~------------~~gi~V 581 (1665)
|+||||||||++|.||++..+....... +.-..++.++|||+|+|+|+.|++++++..+. ..+++|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5899999999999999999887542110 00012357999999999999999999875221 247999
Q ss_pred EEEECCCcccHhh--h-ccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc-CCchHHHHHHHHHHHHHhhc
Q 000324 582 RELSGDQTLTRQQ--I-EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETT 657 (1665)
Q Consensus 582 ~~ltGd~~~~~~~--~-~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~r~~~~~~~~ 657 (1665)
+..+||++...+. . ..++|+|||||+|+.++... ....++++++|||||+|.+.+ .||..++.++.|+... .
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk-~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l---~ 156 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSR-ARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDAL---L 156 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhh-hhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHh---C
Confidence 9999999877643 2 47899999999997665432 235789999999999999987 5999999999998764 3
Q ss_pred cCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchh-------------HHHHHHHHHHH
Q 000324 658 KEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL-------------QRFQLMNDLCY 724 (1665)
Q Consensus 658 ~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~-------------~~~~~~~~~~~ 724 (1665)
+.+.|+|+||||++|.+++++||+......+ +..+..++.++...+ ........ .+...+...++
T Consensus 157 ~~~~QrIgLSATI~n~eevA~~L~g~~pv~I-v~~~~~r~~~l~v~v-p~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~ 234 (1490)
T PRK09751 157 HTSAQRIGLSATVRSASDVAAFLGGDRPVTV-VNPPAMRHPQIRIVV-PVANMDDVSSVASGTGEDSHAGREGSIWPYIE 234 (1490)
T ss_pred CCCCeEEEEEeeCCCHHHHHHHhcCCCCEEE-ECCCCCcccceEEEE-ecCchhhccccccccccccchhhhhhhhHHHH
Confidence 4678999999999999999999986422222 224445555554322 11110000 00111111122
Q ss_pred HHHHH-HhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhh---hhcCCcEEEe
Q 000324 725 EKVVA-VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK---DLLPYGFAIH 800 (1665)
Q Consensus 725 ~~i~~-~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~---~ll~~gv~~~ 800 (1665)
..+.. ....+++|||||||+.|+.++..|.+....... ........ ........+.... ......+.+|
T Consensus 235 ~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ia~~H 307 (1490)
T PRK09751 235 TGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQ------RSPSIAVD-AAHFESTSGATSNRVQSSDVFIARSH 307 (1490)
T ss_pred HHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhcc------ccccccch-hhhhhhccccchhccccccceeeeec
Confidence 22222 223679999999999999999999875321100 00000000 0000000011111 1112347899
Q ss_pred cCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCce
Q 000324 801 HAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYG 880 (1665)
Q Consensus 801 Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G 880 (1665)
||+|++++|..+++.|++|.++|||||+++++|||+|++++||+ |+.|. |+.+|+||+|||||. .+..+
T Consensus 308 HGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq----~gsP~------sVas~LQRiGRAGR~-~gg~s 376 (1490)
T PRK09751 308 HGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQ----VATPL------SVASGLQRIGRAGHQ-VGGVS 376 (1490)
T ss_pred cccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEE----eCCCC------CHHHHHHHhCCCCCC-CCCcc
Confidence 99999999999999999999999999999999999999999999 77665 899999999999996 45677
Q ss_pred EEEEEeCCCcHHH------HHHhhcCC-Cccc--cchhHhhHHHHHHHHHhccccChHHHHHHHHhhHHH
Q 000324 881 EGIIITGHSELRY------YLSLMNQQ-LPIE--SQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLY 941 (1665)
Q Consensus 881 ~~iil~~~~~~~~------y~~ll~~~-~piE--S~l~~~l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~ 941 (1665)
.++++..+.. +. ...++... .|+. .+-...|..|+.+.++.+.+ +.++..+.+..+|.|
T Consensus 377 ~gli~p~~r~-dlle~~~~ve~~l~g~iE~~~~p~nplDVLaqqiva~a~~~~~-~~d~l~~~vrra~pf 444 (1490)
T PRK09751 377 KGLFFPRTRR-DLVDSAVIVECMFAGRLENLTPPHNPLDVLAQQTVAAAAMDAL-QVDEWYSRVRRAAPW 444 (1490)
T ss_pred EEEEEeCcHH-HHHhhHHHHHHHhcCCCCccCCCCChHHHHHHHHHHHHhcCCC-CHHHHHHHhhccCCc
Confidence 7886665422 21 12233222 1222 22234677777777776543 356666655555443
No 31
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-40 Score=418.16 Aligned_cols=340 Identities=22% Similarity=0.354 Sum_probs=268.5
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEccc
Q 000324 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1665)
Q Consensus 482 Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (1665)
|.+++.+.+ .||..|+|||.+++|.++.+.+ ++++|+||||||.+|.+|+++.+...... ....+|+++||
T Consensus 36 l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~D-vi~~A~TGsGKT~Af~lP~l~~l~~~~~~------~~~~aLil~PT 108 (513)
T COG0513 36 LSPELLQALKDLGFEEPTPIQLAAIPLILAGRD-VLGQAQTGTGKTAAFLLPLLQKILKSVER------KYVSALILAPT 108 (513)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCC-EEEECCCCChHHHHHHHHHHHHHhccccc------CCCceEEECCC
Confidence 445555555 6999999999999999999855 99999999999999999999997642111 01119999999
Q ss_pred HHHHHHHHHHHHHhhccC-CcEEEEEECCCcccHhh--h-ccccEEEeChhhH-HHHHhhcCCCccccceeEEEEecccc
Q 000324 560 KALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ--I-EETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (1665)
Q Consensus 560 raLa~q~~~~~~~~~~~~-gi~V~~ltGd~~~~~~~--~-~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (1665)
|+||.|+++.+..+.... ++++..++|+.+...+. + .+++|+|+||+++ |++.+. ...++.++++|+||||.
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~---~l~l~~v~~lVlDEADr 185 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG---KLDLSGVETLVLDEADR 185 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC---CcchhhcCEEEeccHhh
Confidence 999999999999988877 79999999999877653 2 2599999999996 666666 25788999999999999
Q ss_pred ccc-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCc-eEEecC-CC--ccccceEEEEeeec
Q 000324 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKG-LFYFDN-SY--RPVPLSQQYIGIQV 709 (1665)
Q Consensus 635 l~d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~-~~~f~~-~~--rpv~l~~~~~~~~~ 709 (1665)
|.+ ++.+.++.|+..+ +.+.|++++|||+|. .+..+.......+ ...... .. .+..+.+.++.+..
T Consensus 186 mLd~Gf~~~i~~I~~~~-------p~~~qtllfSAT~~~--~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~ 256 (513)
T COG0513 186 MLDMGFIDDIEKILKAL-------PPDRQTLLFSATMPD--DIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVES 256 (513)
T ss_pred hhcCCCHHHHHHHHHhC-------CcccEEEEEecCCCH--HHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCC
Confidence 999 7888888777754 558999999999996 4555554332222 222332 22 34566777766654
Q ss_pred CchhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchh
Q 000324 710 KKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (1665)
Q Consensus 710 ~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l 789 (1665)
.. .++..+. .++......++||||+|+..+..++..|...+.
T Consensus 257 ~~--~k~~~L~-----~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~------------------------------- 298 (513)
T COG0513 257 EE--EKLELLL-----KLLKDEDEGRVIVFVRTKRLVEELAESLRKRGF------------------------------- 298 (513)
T ss_pred HH--HHHHHHH-----HHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCC-------------------------------
Confidence 32 2333222 233333455899999999999999998887653
Q ss_pred hhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhc
Q 000324 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLG 869 (1665)
Q Consensus 790 ~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~G 869 (1665)
.+..+||+|++.+|..+++.|++|..+|||||++++||||+|++.+||+ ||.|. +..+|+||+|
T Consensus 299 ------~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Vin----yD~p~------~~e~yvHRiG 362 (513)
T COG0513 299 ------KVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVIN----YDLPL------DPEDYVHRIG 362 (513)
T ss_pred ------eEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEE----ccCCC------CHHHheeccC
Confidence 3567799999999999999999999999999999999999999999999 99886 8999999999
Q ss_pred ccCCCCCCCceEEEEEeCCC-cHHHHHH
Q 000324 870 RAGRPQYDSYGEGIIITGHS-ELRYYLS 896 (1665)
Q Consensus 870 RAGR~g~d~~G~~iil~~~~-~~~~y~~ 896 (1665)
|+||.| ..|.++.|+++. +...+.+
T Consensus 363 RTgRaG--~~G~ai~fv~~~~e~~~l~~ 388 (513)
T COG0513 363 RTGRAG--RKGVAISFVTEEEEVKKLKR 388 (513)
T ss_pred ccccCC--CCCeEEEEeCcHHHHHHHHH
Confidence 999998 899999999975 5554443
No 32
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.1e-40 Score=375.36 Aligned_cols=357 Identities=19% Similarity=0.288 Sum_probs=272.3
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEccc
Q 000324 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1665)
Q Consensus 482 Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (1665)
|.+|+..++ .||..+||+|..++|.++...| |++-||||||||++|++|++..+...... ......-+|+|+||
T Consensus 13 L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KD-VvveavTGSGKTlAFllP~le~i~rr~~~---~~~~~vgalIIsPT 88 (567)
T KOG0345|consen 13 LSPWLLEALDESGFEKMTPVQAATIPLLLKNKD-VVVEAVTGSGKTLAFLLPMLEIIYRREAK---TPPGQVGALIISPT 88 (567)
T ss_pred ccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCc-eEEEcCCCCCchhhHHHHHHHHHHhhccC---CCccceeEEEecCc
Confidence 458999988 7999999999999998877655 99999999999999999999998543221 11224679999999
Q ss_pred HHHHHHHHHHHHHhhcc-CCcEEEEEECCCcccHhh----hccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccc
Q 000324 560 KALVAEVVGNLSNRLQM-YDVKVRELSGDQTLTRQQ----IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (1665)
Q Consensus 560 raLa~q~~~~~~~~~~~-~gi~V~~ltGd~~~~~~~----~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~ 634 (1665)
|+||.|+.+....++.. .++++..++|+.+.+... .++++|+|+|||++..+.++......+..+.++|+||||.
T Consensus 89 RELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADr 168 (567)
T KOG0345|consen 89 RELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADR 168 (567)
T ss_pred HHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHh
Confidence 99999999998887776 578999999998776542 3578999999999844444433334467899999999999
Q ss_pred ccc-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEE-ec---CCCccccceEEEEeeec
Q 000324 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY-FD---NSYRPVPLSQQYIGIQV 709 (1665)
Q Consensus 635 l~d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~-f~---~~~rpv~l~~~~~~~~~ 709 (1665)
|.| +|-..+..|++++ +...|.=++|||... .+.+..++...+.+-+ +. .+..|..+..+|..+..
T Consensus 169 LldmgFe~~~n~ILs~L-------PKQRRTGLFSATq~~--~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a 239 (567)
T KOG0345|consen 169 LLDMGFEASVNTILSFL-------PKQRRTGLFSATQTQ--EVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEA 239 (567)
T ss_pred HhcccHHHHHHHHHHhc-------ccccccccccchhhH--HHHHHHHhhccCceeeeecccccccCchhhcceeeEecH
Confidence 999 7877888777765 667888999999863 4444444433332221 11 12256667777776553
Q ss_pred CchhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchh
Q 000324 710 KKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (1665)
Q Consensus 710 ~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l 789 (1665)
. .++..+..+ + .....+++|||.+|...++..+..+.....
T Consensus 240 ~---eK~~~lv~~----L-~~~~~kK~iVFF~TCasVeYf~~~~~~~l~------------------------------- 280 (567)
T KOG0345|consen 240 D---EKLSQLVHL----L-NNNKDKKCIVFFPTCASVEYFGKLFSRLLK------------------------------- 280 (567)
T ss_pred H---HHHHHHHHH----H-hccccccEEEEecCcchHHHHHHHHHHHhC-------------------------------
Confidence 3 333333322 2 223467999999999999888877765421
Q ss_pred hhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhc
Q 000324 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLG 869 (1665)
Q Consensus 790 ~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~G 869 (1665)
...+...||.|.+..|..++..|.+..-.||+||+++|||+|+|++++||+ ||||. .+..++||+|
T Consensus 281 ----~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ----~DpP~------~~~~FvHR~G 346 (567)
T KOG0345|consen 281 ----KREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQ----FDPPK------DPSSFVHRCG 346 (567)
T ss_pred ----CCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEe----cCCCC------ChhHHHhhcc
Confidence 133566799999999999999999988899999999999999999999999 99998 7889999999
Q ss_pred ccCCCCCCCceEEEEEeCCCcHHHHHHhhcC-CCcccc
Q 000324 870 RAGRPQYDSYGEGIIITGHSELRYYLSLMNQ-QLPIES 906 (1665)
Q Consensus 870 RAGR~g~d~~G~~iil~~~~~~~~y~~ll~~-~~piES 906 (1665)
|+||.| +.|.++++..+.+.+|..-+-.. ..++|+
T Consensus 347 RTaR~g--r~G~Aivfl~p~E~aYveFl~i~~~v~le~ 382 (567)
T KOG0345|consen 347 RTARAG--REGNAIVFLNPREEAYVEFLRIKGKVELER 382 (567)
T ss_pred hhhhcc--CccceEEEecccHHHHHHHHHhcCccchhh
Confidence 999998 89999999999666655433222 344444
No 33
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.3e-40 Score=413.49 Aligned_cols=343 Identities=19% Similarity=0.303 Sum_probs=256.1
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcc
Q 000324 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1665)
Q Consensus 481 ~Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (1665)
.|++.+..++ .||.+|+++|.++++.++.++ |+|++||||||||++|++|+++.+......... ..+..++|||+|
T Consensus 93 ~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~-dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~-~~~~~~aLil~P 170 (475)
T PRK01297 93 NLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGH-DAIGRAQTGTGKTAAFLISIINQLLQTPPPKER-YMGEPRALIIAP 170 (475)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-CEEEECCCCChHHHHHHHHHHHHHHhcCccccc-ccCCceEEEEeC
Confidence 4677777776 689999999999999988774 599999999999999999999998765321110 112468999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhh----hccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccc
Q 000324 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ----IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (1665)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~----~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~ 634 (1665)
|++||.|+++.++.+.+..++++..++|+.....+. ...++|+|+||+++..+..++. .+++++++|||||+|.
T Consensus 171 treLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~--~~l~~l~~lViDEah~ 248 (475)
T PRK01297 171 TRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGE--VHLDMVEVMVLDEADR 248 (475)
T ss_pred cHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCC--cccccCceEEechHHH
Confidence 999999999999998888899999999987765432 2368999999999855555443 5788999999999999
Q ss_pred ccc-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCC-hHHHHHHHhccccCceEEecCCC-ccccceEEEEeeecCc
Q 000324 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSY-RPVPLSQQYIGIQVKK 711 (1665)
Q Consensus 635 l~d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n-~~dv~~~l~~~~~~~~~~f~~~~-rpv~l~~~~~~~~~~~ 711 (1665)
+.+ .+.+.+..++..+ . .....|++++|||+++ ...++..+..++ ..+.+.... ....+.+++..+....
T Consensus 249 l~~~~~~~~l~~i~~~~----~-~~~~~q~i~~SAT~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~ 321 (475)
T PRK01297 249 MLDMGFIPQVRQIIRQT----P-RKEERQTLLFSATFTDDVMNLAKQWTTDP--AIVEIEPENVASDTVEQHVYAVAGSD 321 (475)
T ss_pred HHhcccHHHHHHHHHhC----C-CCCCceEEEEEeecCHHHHHHHHHhccCC--EEEEeccCcCCCCcccEEEEEecchh
Confidence 876 4544444443322 1 1235699999999874 334443333222 122222221 1222344444433221
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhh
Q 000324 712 PLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (1665)
Q Consensus 712 ~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 791 (1665)
+... ++. ++......++||||++++.++.++..|...+
T Consensus 322 ---k~~~----l~~-ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~---------------------------------- 359 (475)
T PRK01297 322 ---KYKL----LYN-LVTQNPWERVMVFANRKDEVRRIEERLVKDG---------------------------------- 359 (475)
T ss_pred ---HHHH----HHH-HHHhcCCCeEEEEeCCHHHHHHHHHHHHHcC----------------------------------
Confidence 1222 222 2223335699999999999999998886532
Q ss_pred hcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhccc
Q 000324 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871 (1665)
Q Consensus 792 ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRA 871 (1665)
..+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ |+.+. |+.+|+||+|||
T Consensus 360 ---~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~----~~~P~------s~~~y~Qr~GRa 426 (475)
T PRK01297 360 ---INAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVIN----FTLPE------DPDDYVHRIGRT 426 (475)
T ss_pred ---CCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEE----eCCCC------CHHHHHHhhCcc
Confidence 23677899999999999999999999999999999999999999999999 88776 899999999999
Q ss_pred CCCCCCCceEEEEEeCCCcH
Q 000324 872 GRPQYDSYGEGIIITGHSEL 891 (1665)
Q Consensus 872 GR~g~d~~G~~iil~~~~~~ 891 (1665)
||.| ..|.++++.+.++.
T Consensus 427 GR~g--~~g~~i~~~~~~d~ 444 (475)
T PRK01297 427 GRAG--ASGVSISFAGEDDA 444 (475)
T ss_pred CCCC--CCceEEEEecHHHH
Confidence 9998 67999999987654
No 34
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=3.2e-40 Score=379.46 Aligned_cols=342 Identities=18% Similarity=0.280 Sum_probs=272.5
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCC-CCCCCcEEEEEcccHHHHHHHHHH
Q 000324 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGS-FNHSNYKIVYVAPMKALVAEVVGN 569 (1665)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~-~~~~~~kil~iaP~raLa~q~~~~ 569 (1665)
.||..++|||.+++|..++. .++|..|.||||||.+|++|++-.+...+.-... -...++++++++|||+||+|+..+
T Consensus 263 ~~y~eptpIqR~aipl~lQ~-rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeE 341 (673)
T KOG0333|consen 263 PGYKEPTPIQRQAIPLGLQN-RDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEE 341 (673)
T ss_pred cCCCCCchHHHhhccchhcc-CCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHH
Confidence 68999999999999977665 5599999999999999999999888765422111 123578999999999999999999
Q ss_pred HHHhhccCCcEEEEEECCCcccHh---hhccccEEEeChhhH-HHHHhhcCCCccccceeEEEEeccccccc-CCchHHH
Q 000324 570 LSNRLQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLE 644 (1665)
Q Consensus 570 ~~~~~~~~gi~V~~ltGd~~~~~~---~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le 644 (1665)
-.++...+|+++..+.|+.+++.+ ...+|+|+|+||+++ |+|-++.. .++++.+||+|||+.+.| ++-+.+.
T Consensus 342 t~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~l---vl~qctyvvldeadrmiDmgfE~dv~ 418 (673)
T KOG0333|consen 342 TNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYL---VLNQCTYVVLDEADRMIDMGFEPDVQ 418 (673)
T ss_pred HHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHH---HhccCceEeccchhhhhcccccHHHH
Confidence 999999999999999999998876 345899999999997 77777654 678899999999999999 7888888
Q ss_pred HHHHHHHHHH------------------hhccCCeeEEEEcccCCC-hHHHH-HHHhccccCceEEecCCCccccc-eEE
Q 000324 645 SIVARTVRQI------------------ETTKEHIRLVGLSATLPN-YEDVA-LFLRVNLEKGLFYFDNSYRPVPL-SQQ 703 (1665)
Q Consensus 645 ~iv~r~~~~~------------------~~~~~~~riV~lSATl~n-~~dv~-~~l~~~~~~~~~~f~~~~rpv~l-~~~ 703 (1665)
.+++.+...- .....-.+.+.||||+|. .+.++ .+|+. | ...+.....+|.|. +|.
T Consensus 419 ~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~-p--v~vtig~~gk~~~rveQ~ 495 (673)
T KOG0333|consen 419 KILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRR-P--VVVTIGSAGKPTPRVEQK 495 (673)
T ss_pred HHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhC-C--eEEEeccCCCCccchheE
Confidence 8887664211 111123789999999997 33333 34432 2 24445566677664 445
Q ss_pred EEeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhc
Q 000324 704 YIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDM 783 (1665)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ 783 (1665)
++.+++... ...+.+ +++.....++|||||+++.|..+|+.|...+.
T Consensus 496 v~m~~ed~k---~kkL~e-----il~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~------------------------- 542 (673)
T KOG0333|consen 496 VEMVSEDEK---RKKLIE-----ILESNFDPPIIIFVNTKKGADALAKILEKAGY------------------------- 542 (673)
T ss_pred EEEecchHH---HHHHHH-----HHHhCCCCCEEEEEechhhHHHHHHHHhhccc-------------------------
Confidence 554554432 222222 22223467999999999999999999987653
Q ss_pred cccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHH
Q 000324 784 VKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLD 863 (1665)
Q Consensus 784 ~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~ 863 (1665)
.+..+|||-++++|+.++..|++|..+|||||+++++|||+|+|.+||+ ||..+ |+.|
T Consensus 543 ------------~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVin----ydmak------sieD 600 (673)
T KOG0333|consen 543 ------------KVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVIN----YDMAK------SIED 600 (673)
T ss_pred ------------eEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeee----cchhh------hHHH
Confidence 3566799999999999999999999999999999999999999999999 99988 9999
Q ss_pred HHhhhcccCCCCCCCceEEEEEeCCCcHHHHHH
Q 000324 864 IMQMLGRAGRPQYDSYGEGIIITGHSELRYYLS 896 (1665)
Q Consensus 864 ~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ 896 (1665)
|+||+||+||+| ++|.++.|++..+-+.|..
T Consensus 601 YtHRIGRTgRAG--k~GtaiSflt~~dt~v~yd 631 (673)
T KOG0333|consen 601 YTHRIGRTGRAG--KSGTAISFLTPADTAVFYD 631 (673)
T ss_pred HHHHhccccccc--cCceeEEEeccchhHHHHH
Confidence 999999999999 8999999999988665543
No 35
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1e-39 Score=417.43 Aligned_cols=336 Identities=21% Similarity=0.291 Sum_probs=255.8
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEccc
Q 000324 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1665)
Q Consensus 482 Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (1665)
|++.+..++ .||.+|+|+|.++++.++.+. ++|++||||||||++|.+|+++.+.... ..+++||++||
T Consensus 13 L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~-dvl~~ApTGsGKT~af~lpll~~l~~~~--------~~~~~LIL~PT 83 (629)
T PRK11634 13 LKAPILEALNDLGYEKPSPIQAECIPHLLNGR-DVLGMAQTGSGKTAAFSLPLLHNLDPEL--------KAPQILVLAPT 83 (629)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCC-CEEEEcCCCCcHHHHHHHHHHHHhhhcc--------CCCeEEEEeCc
Confidence 556666666 689999999999999998775 5999999999999999999998875421 24689999999
Q ss_pred HHHHHHHHHHHHHhhccC-CcEEEEEECCCcccHhh---hccccEEEeChhhH-HHHHhhcCCCccccceeEEEEecccc
Q 000324 560 KALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (1665)
Q Consensus 560 raLa~q~~~~~~~~~~~~-gi~V~~ltGd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (1665)
++||.|+++.+..+.+.+ ++.+..++|+.+...+. ...++|+|+||+++ +.+.+.. ..++++++||+||||.
T Consensus 84 reLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~---l~l~~l~~lVlDEAd~ 160 (629)
T PRK11634 84 RELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGT---LDLSKLSGLVLDEADE 160 (629)
T ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCC---cchhhceEEEeccHHH
Confidence 999999999998876654 79999999998765442 24689999999997 5655543 3578899999999999
Q ss_pred ccc-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCCh-HHHHHHHhccccCceEEecCCC-ccccceEEEEeeecCc
Q 000324 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY-EDVALFLRVNLEKGLFYFDNSY-RPVPLSQQYIGIQVKK 711 (1665)
Q Consensus 635 l~d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~-~dv~~~l~~~~~~~~~~f~~~~-rpv~l~~~~~~~~~~~ 711 (1665)
+.+ .+...++.++.. .+...|+++||||+|+. ..+...+..++. .+...... ....+.+.++.+...
T Consensus 161 ml~~gf~~di~~Il~~-------lp~~~q~llfSAT~p~~i~~i~~~~l~~~~--~i~i~~~~~~~~~i~q~~~~v~~~- 230 (629)
T PRK11634 161 MLRMGFIEDVETIMAQ-------IPEGHQTALFSATMPEAIRRITRRFMKEPQ--EVRIQSSVTTRPDISQSYWTVWGM- 230 (629)
T ss_pred HhhcccHHHHHHHHHh-------CCCCCeEEEEEccCChhHHHHHHHHcCCCe--EEEccCccccCCceEEEEEEechh-
Confidence 876 565666655543 46788999999999863 334333322221 11222221 112334444433321
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhh
Q 000324 712 PLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (1665)
Q Consensus 712 ~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 791 (1665)
.+...+.. ++......++||||+|+..+..++..|...+
T Consensus 231 --~k~~~L~~-----~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g---------------------------------- 269 (629)
T PRK11634 231 --RKNEALVR-----FLEAEDFDAAIIFVRTKNATLEVAEALERNG---------------------------------- 269 (629)
T ss_pred --hHHHHHHH-----HHHhcCCCCEEEEeccHHHHHHHHHHHHhCC----------------------------------
Confidence 22222222 2233345789999999999999999887643
Q ss_pred hcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhccc
Q 000324 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871 (1665)
Q Consensus 792 ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRA 871 (1665)
+.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||.|. +..+|+||+|||
T Consensus 270 ---~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~----~d~P~------~~e~yvqRiGRt 336 (629)
T PRK11634 270 ---YNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVN----YDIPM------DSESYVHRIGRT 336 (629)
T ss_pred ---CCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEE----eCCCC------CHHHHHHHhccc
Confidence 34667799999999999999999999999999999999999999999999 88876 889999999999
Q ss_pred CCCCCCCceEEEEEeCCCcHHHHH
Q 000324 872 GRPQYDSYGEGIIITGHSELRYYL 895 (1665)
Q Consensus 872 GR~g~d~~G~~iil~~~~~~~~y~ 895 (1665)
||.| +.|.|++++++.+...+.
T Consensus 337 GRaG--r~G~ai~~v~~~e~~~l~ 358 (629)
T PRK11634 337 GRAG--RAGRALLFVENRERRLLR 358 (629)
T ss_pred cCCC--CcceEEEEechHHHHHHH
Confidence 9988 789999999887654443
No 36
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-40 Score=382.88 Aligned_cols=345 Identities=20% Similarity=0.283 Sum_probs=280.9
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
.+|..++.||+++|+.++.+.+ +|..|.||||||++|++|+|..+....... .++.-+|+|.|||+||.|+++.+
T Consensus 87 ~~fv~~teiQ~~~Ip~aL~G~D-vlGAAkTGSGKTLAFlvPvlE~L~r~kWs~----~DGlGalIISPTRELA~QtFevL 161 (758)
T KOG0343|consen 87 AKFVKMTEIQRDTIPMALQGHD-VLGAAKTGSGKTLAFLVPVLEALYRLKWSP----TDGLGALIISPTRELALQTFEVL 161 (758)
T ss_pred cCCccHHHHHHhhcchhccCcc-cccccccCCCceeeehHHHHHHHHHcCCCC----CCCceeEEecchHHHHHHHHHHH
Confidence 5789999999999999999977 999999999999999999999998876543 35778999999999999999999
Q ss_pred HHhhccCCcEEEEEECCCcccHh--hhccccEEEeChhhH-HHHHhhcCCCccccceeEEEEeccccccc-CCchHHHHH
Q 000324 571 SNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESI 646 (1665)
Q Consensus 571 ~~~~~~~gi~V~~ltGd~~~~~~--~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~i 646 (1665)
.+..+..+++.+.+.||...... .+.+.+|+||||+++ .++-.... ....++.++|+|||+.+.| +|..+++.|
T Consensus 162 ~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~--f~t~~lQmLvLDEADR~LDMGFk~tL~~I 239 (758)
T KOG0343|consen 162 NKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPN--FSTSNLQMLVLDEADRMLDMGFKKTLNAI 239 (758)
T ss_pred HHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCC--CCCCcceEEEeccHHHHHHHhHHHHHHHH
Confidence 99988889999999999876543 467899999999985 44443332 3457789999999999999 788899988
Q ss_pred HHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEE----ecCCCccccceEEEEeeecCchhHHHHHHHHH
Q 000324 647 VARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY----FDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDL 722 (1665)
Q Consensus 647 v~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~----f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~ 722 (1665)
+..+ +...|.+++|||-.+ .++...+.....+.+. -...-.|..|.|.|+.++..... ..
T Consensus 240 i~~l-------P~~RQTLLFSATqt~--svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki-------~~ 303 (758)
T KOG0343|consen 240 IENL-------PKKRQTLLFSATQTK--SVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKI-------DM 303 (758)
T ss_pred HHhC-------Chhheeeeeecccch--hHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHH-------HH
Confidence 8754 778999999999764 3444444433332222 22345688899999887765432 23
Q ss_pred HHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecC
Q 000324 723 CYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA 802 (1665)
Q Consensus 723 ~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Ha 802 (1665)
+|..+..+. ..++|||++|.+++..+++.++..... ..+..+||
T Consensus 304 L~sFI~shl-k~K~iVF~SscKqvkf~~e~F~rlrpg-----------------------------------~~l~~L~G 347 (758)
T KOG0343|consen 304 LWSFIKSHL-KKKSIVFLSSCKQVKFLYEAFCRLRPG-----------------------------------IPLLALHG 347 (758)
T ss_pred HHHHHHhcc-ccceEEEEehhhHHHHHHHHHHhcCCC-----------------------------------Cceeeecc
Confidence 455555554 678999999999999999998876422 12455699
Q ss_pred CCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEE
Q 000324 803 GMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 882 (1665)
Q Consensus 803 gm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~ 882 (1665)
+|++..|..|+..|-...--||+||++++||+|+|+|++||. ||.|. .+.+|+||+||+.|. +..|++
T Consensus 348 ~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ----~DCPe------dv~tYIHRvGRtAR~--~~~G~s 415 (758)
T KOG0343|consen 348 TMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQ----VDCPE------DVDTYIHRVGRTARY--KERGES 415 (758)
T ss_pred chhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEE----ecCch------hHHHHHHHhhhhhcc--cCCCce
Confidence 999999999999999988899999999999999999999999 89887 899999999999995 489999
Q ss_pred EEEeCCCcHHHHHHhhcCC-Ccccc
Q 000324 883 IIITGHSELRYYLSLMNQQ-LPIES 906 (1665)
Q Consensus 883 iil~~~~~~~~y~~ll~~~-~piES 906 (1665)
+++.++++.+.+...+... +|++.
T Consensus 416 ll~L~psEeE~~l~~Lq~k~I~i~~ 440 (758)
T KOG0343|consen 416 LLMLTPSEEEAMLKKLQKKKIPIKE 440 (758)
T ss_pred EEEEcchhHHHHHHHHHHcCCCHHh
Confidence 9999999977777655544 66654
No 37
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.3e-39 Score=404.80 Aligned_cols=340 Identities=19% Similarity=0.306 Sum_probs=250.1
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEccc
Q 000324 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1665)
Q Consensus 482 Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (1665)
|+++....+ .||..|+|+|.++++.++++.+ ++++||||||||++|++++++.+... ..+.++||++|+
T Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d-~ii~apTGsGKT~~~~l~~l~~~~~~--------~~~~~~lil~Pt 105 (401)
T PTZ00424 35 LNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYD-TIGQAQSGTGKTATFVIAALQLIDYD--------LNACQALILAPT 105 (401)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCC-EEEECCCCChHHHHHHHHHHHHhcCC--------CCCceEEEECCC
Confidence 444444333 5899999999999999988755 89999999999999999999887532 125689999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhh---hccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccc
Q 000324 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (1665)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (1665)
++||.|+.+.+.......++.+..++|+....... ...++|+|+||+++..+.++.. ..++++++|||||+|++.
T Consensus 106 ~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~--~~l~~i~lvViDEah~~~ 183 (401)
T PTZ00424 106 RELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRH--LRVDDLKLFILDEADEML 183 (401)
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCC--cccccccEEEEecHHHHH
Confidence 99999999999888777788899999987654332 2457999999999744444332 357889999999999987
Q ss_pred c-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCCh-HHH-HHHHhccccCceEEecCCCccccceEEEEeeecCchh
Q 000324 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY-EDV-ALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713 (1665)
Q Consensus 637 d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~-~dv-~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~ 713 (1665)
+ .++..+..++ ...+...|++++|||+|+. .++ ..+++. + ..+...........+.+.+..+.. ..
T Consensus 184 ~~~~~~~~~~i~-------~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~--~~ 252 (401)
T PTZ00424 184 SRGFKGQIYDVF-------KKLPPDVQVALFSATMPNEILELTTKFMRD-P-KRILVKKDELTLEGIRQFYVAVEK--EE 252 (401)
T ss_pred hcchHHHHHHHH-------hhCCCCcEEEEEEecCCHHHHHHHHHHcCC-C-EEEEeCCCCcccCCceEEEEecCh--HH
Confidence 6 3433333332 2346789999999999862 122 223221 1 111111111122223333333221 11
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhc
Q 000324 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (1665)
Q Consensus 714 ~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll 793 (1665)
.....+. .+.......++||||+|++.+..++..|...+
T Consensus 253 ~~~~~l~-----~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~------------------------------------ 291 (401)
T PTZ00424 253 WKFDTLC-----DLYETLTITQAIIYCNTRRKVDYLTKKMHERD------------------------------------ 291 (401)
T ss_pred HHHHHHH-----HHHHhcCCCeEEEEecCcHHHHHHHHHHHHCC------------------------------------
Confidence 1111111 12233345789999999999999988776532
Q ss_pred CCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCC
Q 000324 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (1665)
Q Consensus 794 ~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (1665)
.++..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+ |+++. |..+|+||+|||||
T Consensus 292 -~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~----~~~p~------s~~~y~qr~GRagR 360 (401)
T PTZ00424 292 -FTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVIN----YDLPA------SPENYIHRIGRSGR 360 (401)
T ss_pred -CcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEE----ECCCC------CHHHEeeccccccc
Confidence 35788999999999999999999999999999999999999999999999 88775 89999999999999
Q ss_pred CCCCCceEEEEEeCCCcHHHHHHh
Q 000324 874 PQYDSYGEGIIITGHSELRYYLSL 897 (1665)
Q Consensus 874 ~g~d~~G~~iil~~~~~~~~y~~l 897 (1665)
.| ..|.|++++++.+.+++..+
T Consensus 361 ~g--~~G~~i~l~~~~~~~~~~~~ 382 (401)
T PTZ00424 361 FG--RKGVAINFVTPDDIEQLKEI 382 (401)
T ss_pred CC--CCceEEEEEcHHHHHHHHHH
Confidence 87 78999999998887766543
No 38
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-39 Score=374.93 Aligned_cols=370 Identities=21% Similarity=0.287 Sum_probs=272.0
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
.++..+|.+|+++||.+++++| ++|.|+||||||++|++|+++.+..... ..-..++.-+++|+|||+||.|+|+.+
T Consensus 155 m~i~~pTsVQkq~IP~lL~grD-~lV~aQTGSGKTLAYllPiVq~Lq~m~~--ki~Rs~G~~ALVivPTREL~~Q~y~~~ 231 (708)
T KOG0348|consen 155 MKISAPTSVQKQAIPVLLEGRD-ALVRAQTGSGKTLAYLLPIVQSLQAMEP--KIQRSDGPYALVIVPTRELALQIYETV 231 (708)
T ss_pred hccCccchHhhcchhhhhcCcc-eEEEcCCCCcccHHHHHHHHHHHHhcCc--cccccCCceEEEEechHHHHHHHHHHH
Confidence 5799999999999999999766 9999999999999999999999876532 222456889999999999999999999
Q ss_pred HHhhccCC-cEEEEEECCCcccH---hhhccccEEEeChhhH-HHHHhhcCCCccccceeEEEEeccccccc-CCchHHH
Q 000324 571 SNRLQMYD-VKVRELSGDQTLTR---QQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLE 644 (1665)
Q Consensus 571 ~~~~~~~g-i~V~~ltGd~~~~~---~~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le 644 (1665)
+++++++. |.-+.+.||..... +..++.+|+|+||+++ |+|..... ..++++++||+||+|.|.+ +++..+.
T Consensus 232 qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~--i~~s~LRwlVlDEaDrlleLGfekdit 309 (708)
T KOG0348|consen 232 QKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKS--IKFSRLRWLVLDEADRLLELGFEKDIT 309 (708)
T ss_pred HHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccch--heeeeeeEEEecchhHHHhccchhhHH
Confidence 99998764 44566677665432 2357899999999996 77766543 4577899999999999999 8888888
Q ss_pred HHHHHHHHHHh------hccCCeeEEEEcccCCChHHHHHHHhccccCceEEe---------------------------
Q 000324 645 SIVARTVRQIE------TTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYF--------------------------- 691 (1665)
Q Consensus 645 ~iv~r~~~~~~------~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f--------------------------- 691 (1665)
.|+..+-.+.. ..+...+-++|||||.+ .|.+.-+.....+++.-
T Consensus 310 ~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd--~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l 387 (708)
T KOG0348|consen 310 QILKAVHSIQNAECKDPKLPHQLQNMLLSATLTD--GVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKL 387 (708)
T ss_pred HHHHHHhhccchhcccccccHHHHhHhhhhhhHH--HHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCccccccc
Confidence 88876632111 12334678999999974 34443333322222111
Q ss_pred cCCCccccceEEEEeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCc
Q 000324 692 DNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDS 771 (1665)
Q Consensus 692 ~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~ 771 (1665)
+...-|-.|.++|..++.+- ++-.+...+.+.+.. ....++|||+++...++.-+..|.........-
T Consensus 388 ~~~~iPeqL~qry~vVPpKL---RLV~Laa~L~~~~k~-~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~-------- 455 (708)
T KOG0348|consen 388 DSFAIPEQLLQRYTVVPPKL---RLVALAALLLNKVKF-EEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEG-------- 455 (708)
T ss_pred ccccCcHHhhhceEecCCch---hHHHHHHHHHHHhhh-hhhceeEEEEechhHHHHHHHHHHhhhhccccc--------
Confidence 11223445666666665542 334444444443332 234589999999999999888887654331100
Q ss_pred hhHHHHHhhhhccccchhhh-hcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccC
Q 000324 772 VSREILQSHTDMVKSNDLKD-LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYN 850 (1665)
Q Consensus 772 ~~~~~l~~~~~~~~~~~l~~-ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd 850 (1665)
......+..+.. ++...+.-+||+|++++|..+++.|....-.||+||++++||+|+|.|++||. ||
T Consensus 456 --------~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQ----Yd 523 (708)
T KOG0348|consen 456 --------SSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQ----YD 523 (708)
T ss_pred --------ccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEE----eC
Confidence 000011111111 22344777899999999999999999998889999999999999999999999 99
Q ss_pred CCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcHHHHHHhhcC
Q 000324 851 PEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQ 900 (1665)
Q Consensus 851 ~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~ 900 (1665)
+|. +..||+||+||+.|.| ..|.+++|..+.+.+ |.+++..
T Consensus 524 ~P~------s~adylHRvGRTARaG--~kG~alLfL~P~Eae-y~~~l~~ 564 (708)
T KOG0348|consen 524 PPF------STADYLHRVGRTARAG--EKGEALLFLLPSEAE-YVNYLKK 564 (708)
T ss_pred CCC------CHHHHHHHhhhhhhcc--CCCceEEEecccHHH-HHHHHHh
Confidence 997 9999999999999999 889999999999988 5544443
No 39
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.4e-40 Score=360.65 Aligned_cols=344 Identities=19% Similarity=0.313 Sum_probs=272.7
Q ss_pred ccCCCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEE
Q 000324 478 KISEMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVY 555 (1665)
Q Consensus 478 ~i~~Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~ 555 (1665)
+.-.|.+|+-+.+ .|++.+||+|..|+|.++.+.+ +|-||.||||||.+|.+||++.|..++. +.-+++
T Consensus 10 ~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrd-cig~AkTGsGKT~AFaLPil~rLsedP~--------giFalv 80 (442)
T KOG0340|consen 10 SILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRD-CIGCAKTGSGKTAAFALPILNRLSEDPY--------GIFALV 80 (442)
T ss_pred hhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccc-cccccccCCCcchhhhHHHHHhhccCCC--------cceEEE
Confidence 3345678988877 6899999999999999999877 9999999999999999999999987643 457899
Q ss_pred EcccHHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhh---hccccEEEeChhhH-HHHHhhcCC-CccccceeEEEEe
Q 000324 556 VAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGD-RTYTQLVKLLIID 630 (1665)
Q Consensus 556 iaP~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~-~~~l~~v~liIiD 630 (1665)
+.|||+||-|+.+.|....+.+++++..++|++..-.+. ...+|++|+|||++ |.+...... ...+++++++|+|
T Consensus 81 lTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlD 160 (442)
T KOG0340|consen 81 LTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLD 160 (442)
T ss_pred ecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEec
Confidence 999999999999999998889999999999998765443 35899999999998 444444222 3457889999999
Q ss_pred ccccccc-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCc----cccceEEEE
Q 000324 631 EIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYR----PVPLSQQYI 705 (1665)
Q Consensus 631 EaH~l~d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~r----pv~l~~~~~ 705 (1665)
||+.+.+ .+...++.+.. ..+...|.++||||+.+ .+....+.....+..++....- +-.|.+.|+
T Consensus 161 EADrvL~~~f~d~L~~i~e-------~lP~~RQtLlfSATitd--~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI 231 (442)
T KOG0340|consen 161 EADRVLAGCFPDILEGIEE-------CLPKPRQTLLFSATITD--TIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYI 231 (442)
T ss_pred chhhhhccchhhHHhhhhc-------cCCCccceEEEEeehhh--HHHHhhcCCcccccceEEeccCCCCchhhhhhhee
Confidence 9999987 46666665544 34667899999999974 4555666554443444433333 334666666
Q ss_pred eeecCchhHHHHHHHHHHHHHHHHHh--CCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhc
Q 000324 706 GIQVKKPLQRFQLMNDLCYEKVVAVA--GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDM 783 (1665)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ 783 (1665)
.++..-. +..+|..+.... +++.++|||++..+|+.++..|.....
T Consensus 232 ~~~~~vk-------daYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~------------------------- 279 (442)
T KOG0340|consen 232 LVSIDVK-------DAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEV------------------------- 279 (442)
T ss_pred ecchhhh-------HHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhce-------------------------
Confidence 5554321 112222222222 377999999999999999998887543
Q ss_pred cccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHH
Q 000324 784 VKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLD 863 (1665)
Q Consensus 784 ~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~ 863 (1665)
.++.+|+.|++.+|...+.+|+++.++|||||+++++|+|+|.|.+||+ ||.|. .+.+
T Consensus 280 ------------r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN----~diPr------~P~~ 337 (442)
T KOG0340|consen 280 ------------RVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVN----HDIPR------DPKD 337 (442)
T ss_pred ------------eeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEe----cCCCC------CHHH
Confidence 3566799999999999999999999999999999999999999999999 88776 7889
Q ss_pred HHhhhcccCCCCCCCceEEEEEeCCCcHHHHH
Q 000324 864 IMQMLGRAGRPQYDSYGEGIIITGHSELRYYL 895 (1665)
Q Consensus 864 ~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~ 895 (1665)
|+||+||+.|+| +.|.++.|+++.+.+...
T Consensus 338 yiHRvGRtARAG--R~G~aiSivt~rDv~l~~ 367 (442)
T KOG0340|consen 338 YIHRVGRTARAG--RKGMAISIVTQRDVELLQ 367 (442)
T ss_pred HHHhhcchhccc--CCcceEEEechhhHHHHH
Confidence 999999999998 899999999988776554
No 40
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.6e-40 Score=357.66 Aligned_cols=334 Identities=21% Similarity=0.298 Sum_probs=274.8
Q ss_pred ChhhHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHH
Q 000324 483 PEWAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (1665)
Q Consensus 483 p~~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ra 561 (1665)
++.+...| .||+.|+|+|.+++|.++.+.+ +++-|..|+|||.+|.+|+|..+.... ....+++++|||+
T Consensus 94 r~LLmgIfe~G~ekPSPiQeesIPiaLtGrd-iLaRaKNGTGKT~a~~IP~Lekid~~~--------~~IQ~~ilVPtre 164 (459)
T KOG0326|consen 94 RELLMGIFEKGFEKPSPIQEESIPIALTGRD-ILARAKNGTGKTAAYCIPVLEKIDPKK--------NVIQAIILVPTRE 164 (459)
T ss_pred HHHHHHHHHhccCCCCCccccccceeecchh-hhhhccCCCCCccceechhhhhcCccc--------cceeEEEEeecch
Confidence 35556666 7999999999999999988765 999999999999999999999885532 3567999999999
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEECCCcccHhhh---ccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc-
Q 000324 562 LVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQI---EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD- 637 (1665)
Q Consensus 562 La~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~~---~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d- 637 (1665)
||-|+-+.+.+..+.+|++|...||++++.+..+ ...|++|+||++.-.+..+.. ..+++..++|+|||+.|++
T Consensus 165 lALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgV--a~ls~c~~lV~DEADKlLs~ 242 (459)
T KOG0326|consen 165 LALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGV--ADLSDCVILVMDEADKLLSV 242 (459)
T ss_pred hhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhccc--ccchhceEEEechhhhhhch
Confidence 9999999999988899999999999999887643 467999999999644544443 4678899999999999988
Q ss_pred CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccC-ceEEecCCCccccceEEEEeeecCchhHHH
Q 000324 638 NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEK-GLFYFDNSYRPVPLSQQYIGIQVKKPLQRF 716 (1665)
Q Consensus 638 ~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~-~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~ 716 (1665)
++++.++.++.. +++..|++++|||+|. -|..|+.....+ ..++.-....+.-+.|+|..+.+.. +.
T Consensus 243 ~F~~~~e~li~~-------lP~~rQillySATFP~--tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~q---Kv 310 (459)
T KOG0326|consen 243 DFQPIVEKLISF-------LPKERQILLYSATFPL--TVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQ---KV 310 (459)
T ss_pred hhhhHHHHHHHh-------CCccceeeEEecccch--hHHHHHHHhccCcceeehhhhhhhcchhhheeeechhh---hh
Confidence 799999888775 4789999999999995 456666544332 2455555666677777776665542 23
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCc
Q 000324 717 QLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYG 796 (1665)
Q Consensus 717 ~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~g 796 (1665)
..++ .+.....-+|.||||||.+.++-+|+.+.+.+..
T Consensus 311 hCLn-----tLfskLqINQsIIFCNS~~rVELLAkKITelGys------------------------------------- 348 (459)
T KOG0326|consen 311 HCLN-----TLFSKLQINQSIIFCNSTNRVELLAKKITELGYS------------------------------------- 348 (459)
T ss_pred hhHH-----HHHHHhcccceEEEeccchHhHHHHHHHHhccch-------------------------------------
Confidence 3333 3334445689999999999999999999887644
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCC
Q 000324 797 FAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876 (1665)
Q Consensus 797 v~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~ 876 (1665)
..+.|+.|.+++|+.|+..|++|.++.||||+.+.||||++++.|||+ ||.++ +..+|+||+||+||-|
T Consensus 349 cyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVIN----FDfpk------~aEtYLHRIGRsGRFG- 417 (459)
T KOG0326|consen 349 CYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVIN----FDFPK------NAETYLHRIGRSGRFG- 417 (459)
T ss_pred hhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEe----cCCCC------CHHHHHHHccCCccCC-
Confidence 345699999999999999999999999999999999999999999999 99887 8899999999999976
Q ss_pred CCceEEEEEeCCCcHHH
Q 000324 877 DSYGEGIIITGHSELRY 893 (1665)
Q Consensus 877 d~~G~~iil~~~~~~~~ 893 (1665)
..|.+|-+.+.++...
T Consensus 418 -hlGlAInLityedrf~ 433 (459)
T KOG0326|consen 418 -HLGLAINLITYEDRFN 433 (459)
T ss_pred -CcceEEEEEehhhhhh
Confidence 8999999888766543
No 41
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.7e-39 Score=409.85 Aligned_cols=410 Identities=28% Similarity=0.383 Sum_probs=311.8
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (1665)
.|-++|++++.. +..+++|+||||||||||.++..+|...+.. +.+++|++|.|||.+|.+++|..++
T Consensus 119 ~LD~fQ~~a~~~-Ler~esVlV~ApTssGKTvVaeyAi~~al~~-----------~qrviYTsPIKALsNQKyrdl~~~f 186 (1041)
T COG4581 119 ELDPFQQEAIAI-LERGESVLVCAPTSSGKTVVAEYAIALALRD-----------GQRVIYTSPIKALSNQKYRDLLAKF 186 (1041)
T ss_pred CcCHHHHHHHHH-HhCCCcEEEEccCCCCcchHHHHHHHHHHHc-----------CCceEeccchhhhhhhHHHHHHHHh
Confidence 789999999975 5667889999999999999999999988765 3469999999999999999999988
Q ss_pred ccCCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc-CCchHHHHHHHHHHHH
Q 000324 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQ 653 (1665)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~r~~~~ 653 (1665)
...--.|+.+|||.+.+. .+.++|+|.|-+..++.+.. ..+..+..||+||+|++.| +||.++|.++-.
T Consensus 187 gdv~~~vGL~TGDv~IN~----~A~clvMTTEILRnMlyrg~--~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~---- 256 (1041)
T COG4581 187 GDVADMVGLMTGDVSINP----DAPCLVMTTEILRNMLYRGS--ESLRDIEWVVFDEVHYIGDRERGVVWEEVIIL---- 256 (1041)
T ss_pred hhhhhhccceecceeeCC----CCceEEeeHHHHHHHhccCc--ccccccceEEEEeeeeccccccchhHHHHHHh----
Confidence 643224689999999876 58899999998866665554 5788999999999999999 799999988764
Q ss_pred HhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEee-------ecCch--hHHHHHHHHHH-
Q 000324 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGI-------QVKKP--LQRFQLMNDLC- 723 (1665)
Q Consensus 654 ~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~-------~~~~~--~~~~~~~~~~~- 723 (1665)
.+..+|+|+||||+||+++++.|++......+......+||+||.+++..- ..+.. ...+...+..+
T Consensus 257 ---lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~ 333 (1041)
T COG4581 257 ---LPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLS 333 (1041)
T ss_pred ---cCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhh
Confidence 478899999999999999999999977677888899999999999877642 12211 00000000000
Q ss_pred ----------------------------------HHHHH--HHhCCCeEEEEecChhHHHHHHHHHHHHhhhcccccccc
Q 000324 724 ----------------------------------YEKVV--AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFL 767 (1665)
Q Consensus 724 ----------------------------------~~~i~--~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~ 767 (1665)
++.+. ...+.-|+|+|+-|++.|+..+..+.........-..
T Consensus 334 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e-- 411 (1041)
T COG4581 334 CFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKE-- 411 (1041)
T ss_pred ccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHH--
Confidence 00111 1122458999999999999999988754322211100
Q ss_pred ccCchhHHHHHhhhhcc---------ccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCc
Q 000324 768 KEDSVSREILQSHTDMV---------KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPA 838 (1665)
Q Consensus 768 ~~~~~~~~~l~~~~~~~---------~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~ 838 (1665)
..-+.++...+..+ +-..+..+|..|+|+||+||-+.-|..|+.+|..|.++|++||.|++.|+|+|+
T Consensus 412 ---~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPa 488 (1041)
T COG4581 412 ---RAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPA 488 (1041)
T ss_pred ---HHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcc
Confidence 00122333333322 234567788899999999999999999999999999999999999999999999
Q ss_pred eEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCc--HHHHHHh-hcCCCccccchhHhhHHH
Q 000324 839 HTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE--LRYYLSL-MNQQLPIESQFVSKLADQ 915 (1665)
Q Consensus 839 v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~--~~~y~~l-l~~~~piES~l~~~l~d~ 915 (1665)
.+||+-+.+.+|+.. ..+++..+|.||.|||||.|.|..|.+|++-.... ......+ .....|+-|+|...+...
T Consensus 489 rtvv~~~l~K~dG~~--~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~~~~~e~~~l~~~~~~~L~s~f~~sy~mi 566 (1041)
T COG4581 489 RTVVFTSLSKFDGNG--HRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFESEPSEAAGLASGKLDPLRSQFRLSYNMI 566 (1041)
T ss_pred cceeeeeeEEecCCc--eeecChhHHHHhhhhhccccccccceEEEecCCCCCChHHHHHhhcCCCccchhheecchhHH
Confidence 999999999999664 68899999999999999999999999999954432 3333333 455678888887765555
Q ss_pred HHHHHHhccccChHHHHHHHHhhHH
Q 000324 916 LNAEIVLGTVQNAKEACNWIGYTYL 940 (1665)
Q Consensus 916 lnaeI~~g~i~~~~~~~~wl~~t~~ 940 (1665)
+|- ..+...+.+-..+..+|.
T Consensus 567 lnl----l~v~~l~~~e~ll~~Sf~ 587 (1041)
T COG4581 567 LNL----LRVEGLQTAEDLLERSFA 587 (1041)
T ss_pred Hhh----hhhcccCcHHHHHHhhHH
Confidence 553 233444445556666664
No 42
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=7.1e-39 Score=423.03 Aligned_cols=315 Identities=28% Similarity=0.464 Sum_probs=253.8
Q ss_pred cchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHH
Q 000324 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (1665)
Q Consensus 1327 L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q 1405 (1665)
|++.+.+.+.. ||..|+|+|++||+..+.+++|++++||||||||++|++|+++++.. ++ ++|||+|+++||.|
T Consensus 8 lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~---~~--kal~i~P~raLa~q 82 (737)
T PRK02362 8 LPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR---GG--KALYIVPLRALASE 82 (737)
T ss_pred CCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---CC--cEEEEeChHHHHHH
Confidence 44556666655 79999999999999966667789999999999999999999999864 34 89999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCC-CCchhH
Q 000324 1406 RYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVL 1484 (1665)
Q Consensus 1406 ~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~-~~g~~~ 1484 (1665)
++++|+ .|+. .|++++.++|+...+.+.+..++|+|||||+|+.+++++ ...+++++++|+||+|++++ .+|+.+
T Consensus 83 ~~~~~~-~~~~-~g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~--~~~l~~v~lvViDE~H~l~d~~rg~~l 158 (737)
T PRK02362 83 KFEEFE-RFEE-LGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNG--APWLDDITCVVVDEVHLIDSANRGPTL 158 (737)
T ss_pred HHHHHH-Hhhc-CCCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcC--hhhhhhcCEEEEECccccCCCcchHHH
Confidence 999999 5754 489999999998877777778899999999999999863 34578999999999999987 569999
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEcccCCChHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcC----
Q 000324 1485 EVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT---- 1560 (1665)
Q Consensus 1485 e~~~srl~~i~~~~~~~~riI~lSATl~n~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~---- 1560 (1665)
|.++++++++ ....|+|+||||++|++++++|++... |.+..||+++...+......++......+.
T Consensus 159 e~il~rl~~~----~~~~qii~lSATl~n~~~la~wl~~~~-----~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~ 229 (737)
T PRK02362 159 EVTLAKLRRL----NPDLQVVALSATIGNADELADWLDAEL-----VDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSK 229 (737)
T ss_pred HHHHHHHHhc----CCCCcEEEEcccCCCHHHHHHHhCCCc-----ccCCCCCCCCeeeEecCCeeccccccccCCCccc
Confidence 9999999875 457899999999999999999998753 677889999987765433322222222222
Q ss_pred hhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhh-------hHHHHHHHhc
Q 000324 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNI-------QEEMLKATLR 1633 (1665)
Q Consensus 1561 k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i-------~d~~L~~~l~ 1633 (1665)
.+.+..+...+..++++||||+||++|+.+|..|....... +...+...+..+.+.+ .+..|.+++.
T Consensus 230 ~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~ 303 (737)
T PRK02362 230 DDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKT------LTAAERAELAELAEEIREVSDTETSKDLADCVA 303 (737)
T ss_pred hHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhc------CCHHHHHHHHHHHHHHHhccCccccHHHHHHHH
Confidence 34455555555678899999999999999999997654321 1111122333444444 4678899999
Q ss_pred ccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1634 HGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1634 ~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
.||++|||||++.+|..|+++|++|.++||||
T Consensus 304 ~gva~hHagl~~~eR~~ve~~Fr~G~i~VLva 335 (737)
T PRK02362 304 KGAAFHHAGLSREHRELVEDAFRDRLIKVISS 335 (737)
T ss_pred hCEEeecCCCCHHHHHHHHHHHHcCCCeEEEe
Confidence 99999999999999999999999999999998
No 43
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.7e-38 Score=399.44 Aligned_cols=332 Identities=21% Similarity=0.281 Sum_probs=242.6
Q ss_pred HhhcCCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000324 487 QPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (1665)
Q Consensus 487 ~~~f~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~ 566 (1665)
+..| ||..|+|+|.++++.++.+. +++++||||||||++|++|++.. +..+|||+|+++|+.|+
T Consensus 4 ~~~~-g~~~~r~~Q~~ai~~~l~g~-dvlv~apTGsGKTl~y~lp~l~~--------------~~~~lVi~P~~~L~~dq 67 (470)
T TIGR00614 4 KTVF-GLSSFRPVQLEVINAVLLGR-DCFVVMPTGGGKSLCYQLPALCS--------------DGITLVISPLISLMEDQ 67 (470)
T ss_pred Hhhc-CCCCCCHHHHHHHHHHHcCC-CEEEEcCCCCcHhHHHHHHHHHc--------------CCcEEEEecHHHHHHHH
Confidence 3444 89999999999999999876 59999999999999999998752 23689999999999999
Q ss_pred HHHHHHhhccCCcEEEEEECCCcccHh-------hhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCC
Q 000324 567 VGNLSNRLQMYDVKVRELSGDQTLTRQ-------QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNR 639 (1665)
Q Consensus 567 ~~~~~~~~~~~gi~V~~ltGd~~~~~~-------~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~r 639 (1665)
+..+.. .|+.+..++|+...... .....+|+++|||++....+.........++++|||||||++.+ .
T Consensus 68 ~~~l~~----~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~-~ 142 (470)
T TIGR00614 68 VLQLKA----SGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQ-W 142 (470)
T ss_pred HHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCc-c
Confidence 988865 47888888888765422 12357999999998632111110001356799999999999975 2
Q ss_pred chHHHHHHHHHHHHHhhccCCeeEEEEcccCCCh--HHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHHH
Q 000324 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNY--EDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQ 717 (1665)
Q Consensus 640 g~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~--~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~ 717 (1665)
|..+...+.++.... ...+++++++||||+++. .++..+++... ..+...+..|| .+... +..... ....
T Consensus 143 g~~fr~~~~~l~~l~-~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~--~~~~~~s~~r~-nl~~~---v~~~~~-~~~~ 214 (470)
T TIGR00614 143 GHDFRPDYKALGSLK-QKFPNVPIMALTATASPSVREDILRQLNLKN--PQIFCTSFDRP-NLYYE---VRRKTP-KILE 214 (470)
T ss_pred ccccHHHHHHHHHHH-HHcCCCceEEEecCCCHHHHHHHHHHcCCCC--CcEEeCCCCCC-CcEEE---EEeCCc-cHHH
Confidence 322333333332222 224678999999999863 56777776542 22222222233 22211 111111 1111
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcE
Q 000324 718 LMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGF 797 (1665)
Q Consensus 718 ~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv 797 (1665)
. +...+.....++.+||||+|++.|+.++..|...+ ..+
T Consensus 215 ~----l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g-------------------------------------~~~ 253 (470)
T TIGR00614 215 D----LLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLG-------------------------------------IAA 253 (470)
T ss_pred H----HHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcC-------------------------------------CCe
Confidence 1 22223333445677999999999999999987643 246
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCC
Q 000324 798 AIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD 877 (1665)
Q Consensus 798 ~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d 877 (1665)
+.+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ |++|. |..+|+||+|||||.|
T Consensus 254 ~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~----~~~P~------s~~~y~Qr~GRaGR~G-- 321 (470)
T TIGR00614 254 GAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIH----YSLPK------SMESYYQESGRAGRDG-- 321 (470)
T ss_pred eEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEE----eCCCC------CHHHHHhhhcCcCCCC--
Confidence 78899999999999999999999999999999999999999999999 88886 8999999999999988
Q ss_pred CceEEEEEeCCCcHHHHHHhhcC
Q 000324 878 SYGEGIIITGHSELRYYLSLMNQ 900 (1665)
Q Consensus 878 ~~G~~iil~~~~~~~~y~~ll~~ 900 (1665)
..|.|+++++..+...+..++..
T Consensus 322 ~~~~~~~~~~~~d~~~~~~~~~~ 344 (470)
T TIGR00614 322 LPSECHLFYAPADINRLRRLLME 344 (470)
T ss_pred CCceEEEEechhHHHHHHHHHhc
Confidence 78999999999988877776543
No 44
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-38 Score=340.40 Aligned_cols=336 Identities=19% Similarity=0.326 Sum_probs=263.1
Q ss_pred hhhHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHH
Q 000324 484 EWAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (1665)
Q Consensus 484 ~~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raL 562 (1665)
+.++..| .||+.|+.||+.+++.++.+.+ +++.|..|+|||..|-+.+++.+.-. .....+++++|||+|
T Consensus 37 dlLrgiY~yGfekPS~IQqrAi~~IlkGrd-ViaQaqSGTGKTa~~si~vlq~~d~~--------~r~tQ~lilsPTREL 107 (400)
T KOG0328|consen 37 DLLRGIYAYGFEKPSAIQQRAIPQILKGRD-VIAQAQSGTGKTATFSISVLQSLDIS--------VRETQALILSPTREL 107 (400)
T ss_pred HHHHHHHHhccCCchHHHhhhhhhhhcccc-eEEEecCCCCceEEEEeeeeeecccc--------cceeeEEEecChHHH
Confidence 4556666 6999999999999999999866 99999999999999988888776432 234689999999999
Q ss_pred HHHHHHHHHHhhccCCcEEEEEECCCcccHhhh---ccccEEEeChhh-HHHHHhhcCCCccccceeEEEEeccccccc-
Q 000324 563 VAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQI---EETQIIVTTPEK-WDIITRKSGDRTYTQLVKLLIIDEIHLLHD- 637 (1665)
Q Consensus 563 a~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~~---~~~~IiV~TPek-ld~l~r~~~~~~~l~~v~liIiDEaH~l~d- 637 (1665)
|.|+.+.+..+..++|+.+..+.|+.++..... -+.+++.+||++ +|++.|+.. ....++++|+||++.|++
T Consensus 108 a~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L---~tr~vkmlVLDEaDemL~k 184 (400)
T KOG0328|consen 108 AVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSL---RTRAVKMLVLDEADEMLNK 184 (400)
T ss_pred HHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccc---cccceeEEEeccHHHHHHh
Confidence 999999999988899999999999998665322 478999999999 477777654 456799999999999987
Q ss_pred CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCC-hHHHHHHHhccccCceEEecCCCccc-cceEEEEeeecCchhHH
Q 000324 638 NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYRPV-PLSQQYIGIQVKKPLQR 715 (1665)
Q Consensus 638 ~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n-~~dv~~~l~~~~~~~~~~f~~~~rpv-~l~~~~~~~~~~~~~~~ 715 (1665)
+++..+-.+.. .++++.|++++|||+|. ..+..+++..+|. .+. .....-+. -+.+.|+.+.. ..++
T Consensus 185 gfk~Qiydiyr-------~lp~~~Qvv~~SATlp~eilemt~kfmtdpv-ril-vkrdeltlEgIKqf~v~ve~--EewK 253 (400)
T KOG0328|consen 185 GFKEQIYDIYR-------YLPPGAQVVLVSATLPHEILEMTEKFMTDPV-RIL-VKRDELTLEGIKQFFVAVEK--EEWK 253 (400)
T ss_pred hHHHHHHHHHH-------hCCCCceEEEEeccCcHHHHHHHHHhcCCce-eEE-EecCCCchhhhhhheeeech--hhhh
Confidence 56655544433 46889999999999984 2233333333332 122 22222233 25566665543 3345
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCC
Q 000324 716 FQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPY 795 (1665)
Q Consensus 716 ~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~ 795 (1665)
+..+.+ +|+. ..-.|++|||||++.+..+.+.+++.. +
T Consensus 254 fdtLcd-LYd~----LtItQavIFcnTk~kVdwLtekm~~~n-------------------------------------f 291 (400)
T KOG0328|consen 254 FDTLCD-LYDT----LTITQAVIFCNTKRKVDWLTEKMREAN-------------------------------------F 291 (400)
T ss_pred HhHHHH-Hhhh----hehheEEEEecccchhhHHHHHHHhhC-------------------------------------c
Confidence 555443 2332 335699999999999988888777643 3
Q ss_pred cEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCC
Q 000324 796 GFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQ 875 (1665)
Q Consensus 796 gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g 875 (1665)
.|...||.|.+++|..+.+.|++|+-+||++|++-|||+|+|.+.+||+ ||.|. ....|+||+||+||-|
T Consensus 292 tVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviN----YDLP~------nre~YIHRIGRSGRFG 361 (400)
T KOG0328|consen 292 TVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVIN----YDLPN------NRELYIHRIGRSGRFG 361 (400)
T ss_pred eeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEe----cCCCc------cHHHHhhhhccccccC
Confidence 3666799999999999999999999999999999999999999999999 99886 5688999999999966
Q ss_pred CCCceEEEEEeCCCcHHHHHH
Q 000324 876 YDSYGEGIIITGHSELRYYLS 896 (1665)
Q Consensus 876 ~d~~G~~iil~~~~~~~~y~~ 896 (1665)
+.|.++-++..++++.|.+
T Consensus 362 --RkGvainFVk~~d~~~lrd 380 (400)
T KOG0328|consen 362 --RKGVAINFVKSDDLRILRD 380 (400)
T ss_pred --CcceEEEEecHHHHHHHHH
Confidence 9999999999988776654
No 45
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=8e-37 Score=396.93 Aligned_cols=419 Identities=17% Similarity=0.217 Sum_probs=286.1
Q ss_pred HHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc-cCCcEEE
Q 000324 504 YKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVR 582 (1665)
Q Consensus 504 i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~-~~gi~V~ 582 (1665)
+-.++.++.++|++||||||||+++.+++++... .+.+|+|++|+|++|.|+++++.+.++ ..|..|+
T Consensus 10 i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-----------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VG 78 (819)
T TIGR01970 10 LRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-----------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVG 78 (819)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-----------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEE
Confidence 3345567788999999999999999999998752 134899999999999999999976554 4567777
Q ss_pred EEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccc-ccc-CCchHHHHHHHHHHHHHhhccCC
Q 000324 583 ELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL-LHD-NRGPVLESIVARTVRQIETTKEH 660 (1665)
Q Consensus 583 ~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~-l~d-~rg~~le~iv~r~~~~~~~~~~~ 660 (1665)
..++.... ....++|+|+||+.+...... ...++.+++|||||+|. ..+ +.+.. ++..+ ....+.+
T Consensus 79 y~vr~~~~---~s~~t~I~v~T~G~Llr~l~~---d~~L~~v~~VIiDEaHER~L~~Dl~L~---ll~~i---~~~lr~d 146 (819)
T TIGR01970 79 YRVRGENK---VSRRTRLEVVTEGILTRMIQD---DPELDGVGALIFDEFHERSLDADLGLA---LALDV---QSSLRED 146 (819)
T ss_pred EEEccccc---cCCCCcEEEECCcHHHHHHhh---CcccccCCEEEEeccchhhhccchHHH---HHHHH---HHhcCCC
Confidence 66654332 224689999999975333322 35689999999999995 333 33221 11112 1234678
Q ss_pred eeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 000324 661 IRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFV 740 (1665)
Q Consensus 661 ~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv 740 (1665)
.|+|+||||+++ ..+..|++..+ ++. ...+..|+.++|........ ....+...+.. +... ..+++||||
T Consensus 147 lqlIlmSATl~~-~~l~~~l~~~~---vI~--~~gr~~pVe~~y~~~~~~~~--~~~~v~~~l~~-~l~~-~~g~iLVFl 216 (819)
T TIGR01970 147 LKILAMSATLDG-ERLSSLLPDAP---VVE--SEGRSFPVEIRYLPLRGDQR--LEDAVSRAVEH-ALAS-ETGSILVFL 216 (819)
T ss_pred ceEEEEeCCCCH-HHHHHHcCCCc---EEE--ecCcceeeeeEEeecchhhh--HHHHHHHHHHH-HHHh-cCCcEEEEE
Confidence 999999999975 45777776332 232 23345566666654432211 11112222222 2221 257899999
Q ss_pred cChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCC
Q 000324 741 HSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGH 820 (1665)
Q Consensus 741 ~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~ 820 (1665)
+++.++..++..|.+... ....+..+||+|++++|..+++.|++|.
T Consensus 217 pg~~eI~~l~~~L~~~~~----------------------------------~~~~v~pLHg~L~~~eq~~~~~~~~~G~ 262 (819)
T TIGR01970 217 PGQAEIRRVQEQLAERLD----------------------------------SDVLICPLYGELSLAAQDRAIKPDPQGR 262 (819)
T ss_pred CCHHHHHHHHHHHHhhcC----------------------------------CCcEEEEecCCCCHHHHHHHHhhcccCC
Confidence 999999999998875321 0134778899999999999999999999
Q ss_pred CCeEEeccccccccCCCceEEEEecc----cccCCCCCC----cccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcHH
Q 000324 821 VQVLVSTATLAWGVNLPAHTVIIKGT----QIYNPEKGA----WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR 892 (1665)
Q Consensus 821 i~VLVaT~tla~GVdlP~v~vVI~~t----~~yd~~~g~----~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~ 892 (1665)
.+|||||+++++|||+|++++||+.. ..||+.+|- ..++|..++.||+|||||. ..|.||.+++..+..
T Consensus 263 rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 263 RKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQHQ 339 (819)
T ss_pred eEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHHHH
Confidence 99999999999999999999999964 357777652 3679999999999999997 589999999976544
Q ss_pred HHHHhhcCCCc--cccchhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHH
Q 000324 893 YYLSLMNQQLP--IESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRAD 970 (1665)
Q Consensus 893 ~y~~ll~~~~p--iES~l~~~l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~ 970 (1665)
.+. ....| ..+.| ...+..-...| +.+..+ +.|| ..+...
T Consensus 340 ~l~---~~~~PEI~r~~L----~~~~L~l~~~g-~~~~~~-~~~l-----------------------------~~P~~~ 381 (819)
T TIGR01970 340 RLP---AQDEPEILQADL----SGLALELAQWG-AKDPSD-LRWL-----------------------------DAPPSV 381 (819)
T ss_pred hhh---cCCCcceeccCc----HHHHHHHHHcC-CCChhh-CCCC-----------------------------CCcCHH
Confidence 332 22222 22222 22222111122 111110 1111 111124
Q ss_pred HHHHHHHHHhHcCCcccccCCCccccChHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHhcCC
Q 000324 971 LVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLS 1036 (1665)
Q Consensus 971 li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~~s~s 1036 (1665)
.+..|+..|...|+|+.+ | .+|++|+.||.++++|...+++..+....|. .+.+.|.|+-
T Consensus 382 ~i~~a~~~L~~lgald~~---~--~lT~~G~~~~~lp~~p~l~~~ll~~~~~~~~-~~~~~iaa~l 441 (819)
T TIGR01970 382 ALAAARQLLQRLGALDAQ---G--RLTAHGKAMAALGCHPRLAAMLLSAHSTGLA-ALACDLAALL 441 (819)
T ss_pred HHHHHHHHHHHCCCCCCC---C--CcCHHHHHHHhcCCCHHHHHHHHHhhhcCCH-HHHHHHHHHH
Confidence 578999999999999744 3 6899999999999999999999887655543 3455444443
No 46
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.3e-38 Score=367.55 Aligned_cols=337 Identities=22% Similarity=0.296 Sum_probs=257.3
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCC--CCcEEEEEcccHHHHHHHHH
Q 000324 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNH--SNYKIVYVAPMKALVAEVVG 568 (1665)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~--~~~kil~iaP~raLa~q~~~ 568 (1665)
.++..+||+|+.+++.+..+.+ +++|||||||||.+|++|++..+............ ..+.+++++|||+||.|++.
T Consensus 92 ~~~~~ptpvQk~sip~i~~Grd-l~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~n 170 (482)
T KOG0335|consen 92 SGYTKPTPVQKYSIPIISGGRD-LMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYN 170 (482)
T ss_pred ccccCCCcceeeccceeecCCc-eEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHH
Confidence 6899999999999999877766 99999999999999999999998876443211111 35899999999999999999
Q ss_pred HHHHhhccCCcEEEEEECCCcccHhh---hccccEEEeChhhH-HHHHhhcCCCccccceeEEEEeccccccc--CCchH
Q 000324 569 NLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD--NRGPV 642 (1665)
Q Consensus 569 ~~~~~~~~~gi~V~~ltGd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~l~d--~rg~~ 642 (1665)
+.++.....++++...+|+.+...+. ..+++|+||||+++ |.+.++. ..++.++++|+|||+.|.| .|+|.
T Consensus 171 ea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~---i~l~~~k~~vLDEADrMlD~mgF~p~ 247 (482)
T KOG0335|consen 171 EARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGK---ISLDNCKFLVLDEADRMLDEMGFEPQ 247 (482)
T ss_pred HHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcce---eehhhCcEEEecchHHhhhhcccccc
Confidence 99998877889999999997665542 35899999999998 5555544 4678899999999999999 69999
Q ss_pred HHHHHHHHHHHHhhccCCeeEEEEcccCCC-h-HHHHHHHhccccCceEEec--CCCccccceEEEEeeecCchhHHHHH
Q 000324 643 LESIVARTVRQIETTKEHIRLVGLSATLPN-Y-EDVALFLRVNLEKGLFYFD--NSYRPVPLSQQYIGIQVKKPLQRFQL 718 (1665)
Q Consensus 643 le~iv~r~~~~~~~~~~~~riV~lSATl~n-~-~dv~~~l~~~~~~~~~~f~--~~~rpv~l~~~~~~~~~~~~~~~~~~ 718 (1665)
+..|+.++-. ......|.++||||.|. . ...+.|+..+ .++.-- -.-.+..+.+.+..+.+......
T Consensus 248 Ir~iv~~~~~---~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~---yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~--- 318 (482)
T KOG0335|consen 248 IRKIVEQLGM---PPKNNRQTLLFSATFPKEIQRLAADFLKDN---YIFLAVGRVGSTSENITQKILFVNEMEKRSK--- 318 (482)
T ss_pred HHHHhcccCC---CCccceeEEEEeccCChhhhhhHHHHhhcc---ceEEEEeeeccccccceeEeeeecchhhHHH---
Confidence 9988876521 12357899999999984 1 2333444332 121111 11123345555555554332221
Q ss_pred HHHHHHHHHHHHhC-----CCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhc
Q 000324 719 MNDLCYEKVVAVAG-----KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (1665)
Q Consensus 719 ~~~~~~~~i~~~~~-----~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll 793 (1665)
+.+++-.. ..... ...++|||.+++.+..++..|...+....
T Consensus 319 Lldll~~~-~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~-------------------------------- 365 (482)
T KOG0335|consen 319 LLDLLNKD-DGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAK-------------------------------- 365 (482)
T ss_pred HHHHhhcc-cCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCce--------------------------------
Confidence 11111110 00001 23899999999999999999988764433
Q ss_pred CCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCC
Q 000324 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (1665)
Q Consensus 794 ~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (1665)
-.||.-++.+|...++.|++|.+.|||||+++|||+|+|+|++||+ ||.|. ...+|+||+||+||
T Consensus 366 -----sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVIn----yDmP~------d~d~YvHRIGRTGR 430 (482)
T KOG0335|consen 366 -----SIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVIN----YDMPA------DIDDYVHRIGRTGR 430 (482)
T ss_pred -----eecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEE----eecCc------chhhHHHhcccccc
Confidence 3499999999999999999999999999999999999999999999 99887 68999999999999
Q ss_pred CCCCCceEEEEEeCCCc
Q 000324 874 PQYDSYGEGIIITGHSE 890 (1665)
Q Consensus 874 ~g~d~~G~~iil~~~~~ 890 (1665)
.| ..|.++.|++...
T Consensus 431 ~G--n~G~atsf~n~~~ 445 (482)
T KOG0335|consen 431 VG--NGGRATSFFNEKN 445 (482)
T ss_pred CC--CCceeEEEecccc
Confidence 98 8899999998443
No 47
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=6.8e-38 Score=402.60 Aligned_cols=320 Identities=33% Similarity=0.506 Sum_probs=257.2
Q ss_pred HHHHhc--CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHH
Q 000324 1332 YEALYQ--GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (1665)
Q Consensus 1332 ~~~l~~--~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~ 1409 (1665)
+..++. ++..++|.|+.++...+.++.|++||+|||||||++|+++|++.+... ++ ++|||||+++||.|.+++
T Consensus 20 v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~--k~vYivPlkALa~Ek~~~ 95 (766)
T COG1204 20 VLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG--GG--KVVYIVPLKALAEEKYEE 95 (766)
T ss_pred HHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc--CC--cEEEEeChHHHHHHHHHH
Confidence 444444 465555555555555554488999999999999999999999999983 34 999999999999999999
Q ss_pred HHHHhcCCCCcEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCC-CchhHHHHH
Q 000324 1410 WEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEVIV 1488 (1665)
Q Consensus 1410 ~~~~~~~~~~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~-~g~~~e~~~ 1488 (1665)
|+ +|.. .|++|...||+...+...+..++|||+|||+|+.+.|++.. .+..|++|||||+|++++. +|+.+|.++
T Consensus 96 ~~-~~~~-~GirV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~--~~~~V~lvViDEiH~l~d~~RG~~lE~iv 171 (766)
T COG1204 96 FS-RLEE-LGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPS--WIEEVDLVVIDEIHLLGDRTRGPVLESIV 171 (766)
T ss_pred hh-hHHh-cCCEEEEecCCcccchhhhccCCEEEEchHHhhHhhhcCcc--hhhcccEEEEeeeeecCCcccCceehhHH
Confidence 99 6654 58999999999998888899999999999999999998554 7889999999999999997 899999999
Q ss_pred HHHHHHHhhcCCCCeEEEEcccCCChHHHHHHhcccCC-cEEecCCCCCccceEEEEeecccchhhHHHHhcChhHHHHH
Q 000324 1489 SRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSH-GLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAI 1567 (1665)
Q Consensus 1489 srl~~i~~~~~~~~riI~lSATl~n~~dl~~wl~~~~~-~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i 1567 (1665)
++++.. ...+|+++||||++|+.++|+|+++... ..+.+.|..++++....+.+...... ..........+..+
T Consensus 172 ~r~~~~----~~~~rivgLSATlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k-~~~~~~~~~~~~~v 246 (766)
T COG1204 172 ARMRRL----NELIRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKK-TWPLLIDNLALELV 246 (766)
T ss_pred HHHHhh----CcceEEEEEeeecCCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccc-cccccchHHHHHHH
Confidence 999876 3458999999999999999999999865 46777888899888877776654333 22223344556667
Q ss_pred HHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCccccccc--CCcccch-hhHhhhhHHHHHHHhcccEEEEcCCCC
Q 000324 1568 VQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLL--WPAEEVE-PFIDNIQEEMLKATLRHGVGYLHEGLN 1644 (1665)
Q Consensus 1568 ~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~--~~~~~l~-~~~~~i~d~~L~~~l~~gI~~~H~~m~ 1644 (1665)
...+..++++||||+||+.|..+|..|............ ... ...+.+. .......++.|++++..|+++||+||+
T Consensus 247 ~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~ 325 (766)
T COG1204 247 LESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDE-KIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLP 325 (766)
T ss_pred HHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhh-hhhccccccccccccccccchHHHHHHHHhCccccccCCC
Confidence 777789999999999999999999999864443322211 111 1111111 223344568899999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEC
Q 000324 1645 KTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1645 ~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
.++|..+++.|+.|+|+||||
T Consensus 326 ~~~R~~vE~~Fr~g~ikVlv~ 346 (766)
T COG1204 326 REDRQLVEDAFRKGKIKVLVS 346 (766)
T ss_pred HHHHHHHHHHHhcCCceEEEe
Confidence 999999999999999999998
No 48
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.6e-36 Score=390.90 Aligned_cols=333 Identities=20% Similarity=0.302 Sum_probs=245.4
Q ss_pred ccCCCCh-hhHhhcCCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEE
Q 000324 478 KISEMPE-WAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYV 556 (1665)
Q Consensus 478 ~i~~Lp~-~~~~~f~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~i 556 (1665)
+...++. .++.. .||..|+|+|.++++.++.+. ++++++|||+|||++|++|++.. ...+|||
T Consensus 8 ~~~~~~~~~l~~~-fG~~~~r~~Q~~ai~~il~g~-dvlv~apTGsGKTl~y~lpal~~--------------~g~tlVi 71 (607)
T PRK11057 8 NLESLAKQVLQET-FGYQQFRPGQQEIIDAVLSGR-DCLVVMPTGGGKSLCYQIPALVL--------------DGLTLVV 71 (607)
T ss_pred CchhHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCC-CEEEEcCCCchHHHHHHHHHHHc--------------CCCEEEE
Confidence 4444443 33343 489999999999999998775 59999999999999999999853 2268999
Q ss_pred cccHHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhh-------hccccEEEeChhhHH--HHHhhcCCCccccceeEE
Q 000324 557 APMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWD--IITRKSGDRTYTQLVKLL 627 (1665)
Q Consensus 557 aP~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~-------~~~~~IiV~TPekld--~l~r~~~~~~~l~~v~li 627 (1665)
+|+++|+.|++..+... |+.+..+.+........ ....+++++|||++. .+... ....++++|
T Consensus 72 sPl~sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~----l~~~~l~~i 143 (607)
T PRK11057 72 SPLISLMKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEH----LAHWNPALL 143 (607)
T ss_pred ecHHHHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHH----HhhCCCCEE
Confidence 99999999999988753 78888887766543321 135789999999862 22222 123468999
Q ss_pred EEeccccccc---CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCCh--HHHHHHHhccccCceEEecCCCccccceE
Q 000324 628 IIDEIHLLHD---NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY--EDVALFLRVNLEKGLFYFDNSYRPVPLSQ 702 (1665)
Q Consensus 628 IiDEaH~l~d---~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~--~dv~~~l~~~~~~~~~~f~~~~rpv~l~~ 702 (1665)
||||||++.+ .+.+.+..+ ..+. ...+++++++||||+++. .++..+++.. .......+..||. +.
T Consensus 144 VIDEaH~i~~~G~~fr~~y~~L-~~l~----~~~p~~~~v~lTAT~~~~~~~di~~~l~l~--~~~~~~~~~~r~n-l~- 214 (607)
T PRK11057 144 AVDEAHCISQWGHDFRPEYAAL-GQLR----QRFPTLPFMALTATADDTTRQDIVRLLGLN--DPLIQISSFDRPN-IR- 214 (607)
T ss_pred EEeCccccccccCcccHHHHHH-HHHH----HhCCCCcEEEEecCCChhHHHHHHHHhCCC--CeEEEECCCCCCc-ce-
Confidence 9999999975 244555432 2222 234578999999999863 3566666543 2233333333442 21
Q ss_pred EEEeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhh
Q 000324 703 QYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTD 782 (1665)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 782 (1665)
+....... .... +...+ ....++++||||+|+++|+.++..|...+
T Consensus 215 -~~v~~~~~---~~~~----l~~~l-~~~~~~~~IIFc~tr~~~e~la~~L~~~g------------------------- 260 (607)
T PRK11057 215 -YTLVEKFK---PLDQ----LMRYV-QEQRGKSGIIYCNSRAKVEDTAARLQSRG------------------------- 260 (607)
T ss_pred -eeeeeccc---hHHH----HHHHH-HhcCCCCEEEEECcHHHHHHHHHHHHhCC-------------------------
Confidence 11111111 1111 11212 22346799999999999999999987643
Q ss_pred ccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHH
Q 000324 783 MVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPL 862 (1665)
Q Consensus 783 ~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~ 862 (1665)
..++.+||+|+..+|..+++.|+.|.++|||||+++++|||+|++++||+ |++|. |..
T Consensus 261 ------------~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~----~d~P~------s~~ 318 (607)
T PRK11057 261 ------------ISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVH----FDIPR------NIE 318 (607)
T ss_pred ------------CCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEE----eCCCC------CHH
Confidence 24788899999999999999999999999999999999999999999999 88886 899
Q ss_pred HHHhhhcccCCCCCCCceEEEEEeCCCcHHHHHHhhcCC
Q 000324 863 DIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQ 901 (1665)
Q Consensus 863 ~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~ 901 (1665)
+|+||+|||||.| ..|.|+++++..+...+..++...
T Consensus 319 ~y~Qr~GRaGR~G--~~~~~ill~~~~d~~~~~~~~~~~ 355 (607)
T PRK11057 319 SYYQETGRAGRDG--LPAEAMLFYDPADMAWLRRCLEEK 355 (607)
T ss_pred HHHHHhhhccCCC--CCceEEEEeCHHHHHHHHHHHhcC
Confidence 9999999999998 679999999999988888777654
No 49
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=2.1e-36 Score=394.19 Aligned_cols=410 Identities=18% Similarity=0.221 Sum_probs=282.9
Q ss_pred HHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc-cCCcEEE
Q 000324 504 YKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVR 582 (1665)
Q Consensus 504 i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~-~~gi~V~ 582 (1665)
|-.++.++.+++++||||||||+++.++++.... .+.+|++++|+|++|.|+++++.+.++ ..|..|+
T Consensus 13 i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~-----------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VG 81 (812)
T PRK11664 13 LLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG-----------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVG 81 (812)
T ss_pred HHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC-----------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEE
Confidence 3344566778999999999999999999986521 124899999999999999999976654 4577888
Q ss_pred EEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCee
Q 000324 583 ELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIR 662 (1665)
Q Consensus 583 ~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~r 662 (1665)
..+++..... ..++|+|+||+.+..+... ...++.+++|||||+|.. +...+.++..+.......+++.|
T Consensus 82 y~vr~~~~~~---~~t~I~v~T~G~Llr~l~~---d~~L~~v~~IIlDEaHER----~l~~Dl~L~ll~~i~~~lr~~lq 151 (812)
T PRK11664 82 YRMRAESKVG---PNTRLEVVTEGILTRMIQR---DPELSGVGLVILDEFHER----SLQADLALALLLDVQQGLRDDLK 151 (812)
T ss_pred EEecCccccC---CCCcEEEEChhHHHHHHhh---CCCcCcCcEEEEcCCCcc----ccccchHHHHHHHHHHhCCccce
Confidence 8777654322 3578999999986433333 346899999999999963 21111122222222234567899
Q ss_pred EEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Q 000324 663 LVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHS 742 (1665)
Q Consensus 663 iV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~s 742 (1665)
+|+||||++. +.+..|+...+ ++. ...+..|+.++|........ ....+...+.. +.. ...+++||||++
T Consensus 152 lilmSATl~~-~~l~~~~~~~~---~I~--~~gr~~pV~~~y~~~~~~~~--~~~~v~~~l~~-~l~-~~~g~iLVFlpg 221 (812)
T PRK11664 152 LLIMSATLDN-DRLQQLLPDAP---VIV--SEGRSFPVERRYQPLPAHQR--FDEAVARATAE-LLR-QESGSLLLFLPG 221 (812)
T ss_pred EEEEecCCCH-HHHHHhcCCCC---EEE--ecCccccceEEeccCchhhh--HHHHHHHHHHH-HHH-hCCCCEEEEcCC
Confidence 9999999964 46777775322 332 33355567777664432211 11111122222 222 136899999999
Q ss_pred hhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCC
Q 000324 743 RKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQ 822 (1665)
Q Consensus 743 r~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~ 822 (1665)
++++..++..|...... ...+..+||+|+..+|..+++.|++|..+
T Consensus 222 ~~ei~~l~~~L~~~~~~----------------------------------~~~v~~Lhg~l~~~eq~~~~~~~~~G~rk 267 (812)
T PRK11664 222 VGEIQRVQEQLASRVAS----------------------------------DVLLCPLYGALSLAEQQKAILPAPAGRRK 267 (812)
T ss_pred HHHHHHHHHHHHHhccC----------------------------------CceEEEeeCCCCHHHHHHHhccccCCCeE
Confidence 99999999998753110 12367789999999999999999999999
Q ss_pred eEEeccccccccCCCceEEEEecc----cccCCCCCC----cccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcHHHH
Q 000324 823 VLVSTATLAWGVNLPAHTVIIKGT----QIYNPEKGA----WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYY 894 (1665)
Q Consensus 823 VLVaT~tla~GVdlP~v~vVI~~t----~~yd~~~g~----~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y 894 (1665)
|||||+++++|||+|++++||+.. ..||+..|. ..++|..+|.||+|||||. ..|.||.+++..+..
T Consensus 268 VlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~~-- 342 (812)
T PRK11664 268 VVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQAE-- 342 (812)
T ss_pred EEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHHh--
Confidence 999999999999999999999964 348888763 2578999999999999997 489999999976543
Q ss_pred HHhhcCCCccccchhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHHHHHH
Q 000324 895 LSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHT 974 (1665)
Q Consensus 895 ~~ll~~~~piES~l~~~l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~ 974 (1665)
.+.....| .-+...|...+..-...|. .+..+ +.|| +.| ....+..
T Consensus 343 -~l~~~~~P--EI~r~dL~~~~L~l~~~g~-~~~~~-~~~l------------------------d~P-----~~~~~~~ 388 (812)
T PRK11664 343 -RAAAQSEP--EILHSDLSGLLLELLQWGC-HDPAQ-LSWL------------------------DQP-----PAAALAA 388 (812)
T ss_pred -hCccCCCC--ceeccchHHHHHHHHHcCC-CCHHh-CCCC------------------------CCC-----CHHHHHH
Confidence 33323333 2222233333332222231 22111 1111 011 1245789
Q ss_pred HHHHHhHcCCcccccCCCccccChHHHHHHHhcCCHHHHHHHHHhcCC
Q 000324 975 AATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKP 1022 (1665)
Q Consensus 975 a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~ 1022 (1665)
|+..|...|+|+.+ | .+|++|+.|+.++++|...+++..+...
T Consensus 389 A~~~L~~lgald~~---g--~lT~~G~~m~~lp~~Prla~~ll~a~~~ 431 (812)
T PRK11664 389 AKRLLQQLGALDGQ---G--RLTARGRKMAALGNDPRLAAMLVAAKED 431 (812)
T ss_pred HHHHHHHCCCCCCC---C--CcCHHHHHHHhcCCchHHHHHHHHHHhc
Confidence 99999999999743 3 7899999999999999999999876543
No 50
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=9.2e-37 Score=394.75 Aligned_cols=331 Identities=20% Similarity=0.276 Sum_probs=247.2
Q ss_pred hHhhcCCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHH
Q 000324 486 AQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565 (1665)
Q Consensus 486 ~~~~f~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q 565 (1665)
++..| ||.+|+|+|.++++.++.++ +++++||||+|||++|++|++.. +..++||+|+++|+.|
T Consensus 5 l~~~f-g~~~fr~~Q~~~i~~il~g~-dvlv~~PTG~GKTl~y~lpal~~--------------~g~~lVisPl~sL~~d 68 (591)
T TIGR01389 5 LKRTF-GYDDFRPGQEEIISHVLDGR-DVLVVMPTGGGKSLCYQVPALLL--------------KGLTVVISPLISLMKD 68 (591)
T ss_pred HHHhc-CCCCCCHHHHHHHHHHHcCC-CEEEEcCCCccHhHHHHHHHHHc--------------CCcEEEEcCCHHHHHH
Confidence 34444 79999999999999999876 59999999999999999998742 2258999999999999
Q ss_pred HHHHHHHhhccCCcEEEEEECCCcccHhh-------hccccEEEeChhhHH--HHHhhcCCCccccceeEEEEecccccc
Q 000324 566 VVGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWD--IITRKSGDRTYTQLVKLLIIDEIHLLH 636 (1665)
Q Consensus 566 ~~~~~~~~~~~~gi~V~~ltGd~~~~~~~-------~~~~~IiV~TPekld--~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (1665)
++..+.. +|+.+..++|+....... ....+|+++|||++. .+.+. ....++++|||||||++.
T Consensus 69 q~~~l~~----~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~----l~~~~l~~iViDEaH~i~ 140 (591)
T TIGR01389 69 QVDQLRA----AGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNM----LQRIPIALVAVDEAHCVS 140 (591)
T ss_pred HHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHH----HhcCCCCEEEEeCCcccc
Confidence 9998876 378899999887654321 236799999999862 22222 224578999999999997
Q ss_pred cCCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCC--hHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhH
Q 000324 637 DNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQ 714 (1665)
Q Consensus 637 d~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n--~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~ 714 (1665)
+ +|..+.....++....... +..+++++|||.+. ..++..+++... ...++.+..||. +. +.......
T Consensus 141 ~-~g~~frp~y~~l~~l~~~~-~~~~vi~lTAT~~~~~~~~i~~~l~~~~--~~~~~~~~~r~n-l~--~~v~~~~~--- 210 (591)
T TIGR01389 141 Q-WGHDFRPEYQRLGSLAERF-PQVPRIALTATADAETRQDIRELLRLAD--ANEFITSFDRPN-LR--FSVVKKNN--- 210 (591)
T ss_pred c-ccCccHHHHHHHHHHHHhC-CCCCEEEEEeCCCHHHHHHHHHHcCCCC--CCeEecCCCCCC-cE--EEEEeCCC---
Confidence 4 3333333333333333332 34559999999875 356888887643 222333333442 22 21111111
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcC
Q 000324 715 RFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLP 794 (1665)
Q Consensus 715 ~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~ 794 (1665)
... .+.+.+.. ..+.++||||+|++.|+.++..|...+
T Consensus 211 ~~~----~l~~~l~~-~~~~~~IIf~~sr~~~e~la~~L~~~g------------------------------------- 248 (591)
T TIGR01389 211 KQK----FLLDYLKK-HRGQSGIIYASSRKKVEELAERLESQG------------------------------------- 248 (591)
T ss_pred HHH----HHHHHHHh-cCCCCEEEEECcHHHHHHHHHHHHhCC-------------------------------------
Confidence 111 12222222 236789999999999999999887543
Q ss_pred CcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCC
Q 000324 795 YGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRP 874 (1665)
Q Consensus 795 ~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~ 874 (1665)
..++.+||||+.++|..+++.|.+|.++|||||+++++|||+|++++||+ |+++. |..+|+||+|||||.
T Consensus 249 ~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~----~~~p~------s~~~y~Q~~GRaGR~ 318 (591)
T TIGR01389 249 ISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIH----YDMPG------NLESYYQEAGRAGRD 318 (591)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEE----cCCCC------CHHHHhhhhccccCC
Confidence 23678899999999999999999999999999999999999999999999 99887 899999999999998
Q ss_pred CCCCceEEEEEeCCCcHHHHHHhhcCCCcc
Q 000324 875 QYDSYGEGIIITGHSELRYYLSLMNQQLPI 904 (1665)
Q Consensus 875 g~d~~G~~iil~~~~~~~~y~~ll~~~~pi 904 (1665)
| ..|.|+++++..+...+..++....|-
T Consensus 319 G--~~~~~il~~~~~d~~~~~~~i~~~~~~ 346 (591)
T TIGR01389 319 G--LPAEAILLYSPADIALLKRRIEQSEAD 346 (591)
T ss_pred C--CCceEEEecCHHHHHHHHHHHhccCCc
Confidence 8 678999999999998888888765553
No 51
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-37 Score=357.53 Aligned_cols=374 Identities=21% Similarity=0.299 Sum_probs=266.7
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCC---CCCCCCcE--EEEEcccHHHHHH
Q 000324 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDG---SFNHSNYK--IVYVAPMKALVAE 565 (1665)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g---~~~~~~~k--il~iaP~raLa~q 565 (1665)
.||..|++||+.++|.++.+.-+++..|.||||||++|-+||+..+........ .....+++ .++++|||+||.|
T Consensus 199 ~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~Q 278 (731)
T KOG0347|consen 199 LGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQ 278 (731)
T ss_pred cCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHH
Confidence 699999999999999999997779999999999999999999996654322110 11123344 9999999999999
Q ss_pred HHHHHHHhhccCCcEEEEEECCCcccHhhh---ccccEEEeChhh-HHHHHhhcCCCccccceeEEEEeccccccc-CCc
Q 000324 566 VVGNLSNRLQMYDVKVRELSGDQTLTRQQI---EETQIIVTTPEK-WDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRG 640 (1665)
Q Consensus 566 ~~~~~~~~~~~~gi~V~~ltGd~~~~~~~~---~~~~IiV~TPek-ld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg 640 (1665)
+.+.+.......+++|..++||...-+++. ..++|+|+||++ |..+.........+.+++++|+||+|+|.. +.-
T Consensus 279 V~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF 358 (731)
T KOG0347|consen 279 VKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHF 358 (731)
T ss_pred HHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccH
Confidence 999999999889999999999998877653 478999999999 566655544456678899999999999986 455
Q ss_pred hHHHHHHHHHHHHHhhccCCeeEEEEcccCCCh--HHHHHHHhccccC-----ce--EEecCCCccccceEEEEeeecCc
Q 000324 641 PVLESIVARTVRQIETTKEHIRLVGLSATLPNY--EDVALFLRVNLEK-----GL--FYFDNSYRPVPLSQQYIGIQVKK 711 (1665)
Q Consensus 641 ~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~--~dv~~~l~~~~~~-----~~--~~f~~~~rpv~l~~~~~~~~~~~ 711 (1665)
..+..++..+. -++.....|.+.+|||+.-. ..+..-....... .+ ..-.-.+|.-| .++..+...
T Consensus 359 ~Els~lL~~L~--e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kp---kiiD~t~q~ 433 (731)
T KOG0347|consen 359 EELSKLLKHLN--EEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKP---KIIDLTPQS 433 (731)
T ss_pred HHHHHHHHHhh--hhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCC---eeEecCcch
Confidence 56666666554 13445677999999998621 0111111100000 00 00000011111 111111111
Q ss_pred hhHHHHHHHHHHHHHHHHHh--------------CCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHH
Q 000324 712 PLQRFQLMNDLCYEKVVAVA--------------GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREIL 777 (1665)
Q Consensus 712 ~~~~~~~~~~~~~~~i~~~~--------------~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l 777 (1665)
. ....+.+..+.+. -.+.+|||||+...+.+++-.|.......
T Consensus 434 --~----ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p----------------- 490 (731)
T KOG0347|consen 434 --A----TASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNLDIPP----------------- 490 (731)
T ss_pred --h----HHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhcCCCC-----------------
Confidence 1 1111111111110 15789999999999999998887654322
Q ss_pred HhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcc
Q 000324 778 QSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWT 857 (1665)
Q Consensus 778 ~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~ 857 (1665)
..+||.|.+.+|...++.|++..-.|||||+++|||+|+|+|.+||| |..|.
T Consensus 491 --------------------~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIH----YqVPr---- 542 (731)
T KOG0347|consen 491 --------------------LPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIH----YQVPR---- 542 (731)
T ss_pred --------------------chhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEE----eecCC----
Confidence 23499999999999999999999999999999999999999999999 77665
Q ss_pred cCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcHHHHHHhh---c--C---CCccccchhHhhHHH--HHHHHHhcc
Q 000324 858 ELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLM---N--Q---QLPIESQFVSKLADQ--LNAEIVLGT 924 (1665)
Q Consensus 858 ~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll---~--~---~~piES~l~~~l~d~--lnaeI~~g~ 924 (1665)
+..-|+||.||+.|++ ..|..+++|.+.+...|.++. . + -+||+..++..+.+. |..||..-.
T Consensus 543 --tseiYVHRSGRTARA~--~~Gvsvml~~P~e~~~~~KL~ktL~k~~dlpifPv~~~~m~~lkeRvrLA~ei~~~e 615 (731)
T KOG0347|consen 543 --TSEIYVHRSGRTARAN--SEGVSVMLCGPQEVGPLKKLCKTLKKKEDLPIFPVETDIMDALKERVRLAREIDKLE 615 (731)
T ss_pred --ccceeEeccccccccc--CCCeEEEEeChHHhHHHHHHHHHHhhccCCCceeccHHHHHHHHHHHHHHHHHHHhh
Confidence 6677999999999998 789999999999988887752 1 1 257777777655543 344444433
No 52
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-36 Score=335.32 Aligned_cols=341 Identities=19% Similarity=0.270 Sum_probs=262.3
Q ss_pred ChhhHhhc-CCCCCCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccH
Q 000324 483 PEWAQPAF-KGMTQLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMK 560 (1665)
Q Consensus 483 p~~~~~~f-~g~~~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~r 560 (1665)
|+.++..+ .+|..|+.||..++|-++.. ..|+|..+..|+|||.+|.|++|..+... ...+.+++++|+|
T Consensus 99 Pellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~--------~~~PQ~iCLaPtr 170 (477)
T KOG0332|consen 99 PELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD--------VVVPQCICLAPTR 170 (477)
T ss_pred HHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc--------ccCCCceeeCchH
Confidence 45555555 68999999999999998866 56999999999999999999999887543 2356799999999
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEEECCCcccHhhhccccEEEeChhhH-HHHHhhcCCCccccceeEEEEecccccccCC
Q 000324 561 ALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHDNR 639 (1665)
Q Consensus 561 aLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~l~d~r 639 (1665)
+||.|+.+.+.+..+..++++.....+....+...-..+|+|+||+.+ |...+-.. ..+++++++|+|||+.+.+.+
T Consensus 171 ELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~--id~~kikvfVlDEAD~Mi~tq 248 (477)
T KOG0332|consen 171 ELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKC--IDLEKIKVFVLDEADVMIDTQ 248 (477)
T ss_pred HHHHHHHHHHHHhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHh--hChhhceEEEecchhhhhhcc
Confidence 999999999999888778888887777755544444678999999997 54444122 357889999999999998754
Q ss_pred chHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhcc-cc-CceEEecCCCccccceEEEEeeecCchhHHHH
Q 000324 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN-LE-KGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQ 717 (1665)
Q Consensus 640 g~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~-~~-~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~ 717 (1665)
|-. ..-.++ ....+++.|++++|||.. +.++.|...- +. +.++.-.....-.++.|.++.+.. ...+++
T Consensus 249 G~~--D~S~rI---~~~lP~~~QllLFSATf~--e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~--~~~K~~ 319 (477)
T KOG0332|consen 249 GFQ--DQSIRI---MRSLPRNQQLLLFSATFV--EKVAAFALKIVPNANVIILKREELALDNIKQLYVLCAC--RDDKYQ 319 (477)
T ss_pred ccc--ccchhh---hhhcCCcceEEeeechhH--HHHHHHHHHhcCCCceeeeehhhccccchhhheeeccc--hhhHHH
Confidence 321 111222 334678999999999986 4555554321 11 233333444444556666655443 334455
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcE
Q 000324 718 LMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGF 797 (1665)
Q Consensus 718 ~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv 797 (1665)
.+.. +|.. ..-++.||||+|++.+..++..+...+ +.|
T Consensus 320 ~l~~-lyg~----~tigqsiIFc~tk~ta~~l~~~m~~~G-------------------------------------h~V 357 (477)
T KOG0332|consen 320 ALVN-LYGL----LTIGQSIIFCHTKATAMWLYEEMRAEG-------------------------------------HQV 357 (477)
T ss_pred HHHH-HHhh----hhhhheEEEEeehhhHHHHHHHHHhcC-------------------------------------cee
Confidence 5444 3332 235799999999999999999988765 457
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCC
Q 000324 798 AIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD 877 (1665)
Q Consensus 798 ~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d 877 (1665)
..+||.|...+|..+.+.|+.|.-+|||+|+++|||||++.+.+||+ ||.|...-..-+...|+||+||+||-|
T Consensus 358 ~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvN----ydlP~~~~~~pD~etYlHRiGRtGRFG-- 431 (477)
T KOG0332|consen 358 SLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVN----YDLPVKYTGEPDYETYLHRIGRTGRFG-- 431 (477)
T ss_pred EEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEe----cCCccccCCCCCHHHHHHHhccccccc--
Confidence 88899999999999999999999999999999999999999999999 887765556679999999999999976
Q ss_pred CceEEEEEeCCCc
Q 000324 878 SYGEGIIITGHSE 890 (1665)
Q Consensus 878 ~~G~~iil~~~~~ 890 (1665)
+.|.++-+....+
T Consensus 432 kkG~a~n~v~~~~ 444 (477)
T KOG0332|consen 432 KKGLAINLVDDKD 444 (477)
T ss_pred ccceEEEeecccC
Confidence 9999999888755
No 53
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=3.9e-36 Score=396.08 Aligned_cols=308 Identities=32% Similarity=0.528 Sum_probs=241.5
Q ss_pred cchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHH
Q 000324 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (1665)
Q Consensus 1327 L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q 1405 (1665)
+++.+.+.+.. ||..|+|+|++||+..+.+++|++++||||||||++|++|+++++.. .++ ++|||+|+++|+.|
T Consensus 8 l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~--~~~--~~l~l~P~~aLa~q 83 (720)
T PRK00254 8 VDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR--EGG--KAVYLVPLKALAEE 83 (720)
T ss_pred CCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh--cCC--eEEEEeChHHHHHH
Confidence 44556666665 89999999999999866667789999999999999999999999876 234 99999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCC-CCchhH
Q 000324 1406 RYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVL 1484 (1665)
Q Consensus 1406 ~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~-~~g~~~ 1484 (1665)
+++.|+ .|.. .|++|..++|+...+.+.+..++|+|+||++|+.++++ ....++++++||+||+|++++ .+|+.+
T Consensus 84 ~~~~~~-~~~~-~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~--~~~~l~~l~lvViDE~H~l~~~~rg~~l 159 (720)
T PRK00254 84 KYREFK-DWEK-LGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRH--GSSWIKDVKLVVADEIHLIGSYDRGATL 159 (720)
T ss_pred HHHHHH-HHhh-cCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhC--CchhhhcCCEEEEcCcCccCCccchHHH
Confidence 999998 4643 58999999999887767777889999999999999875 334688999999999999986 468888
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEcccCCChHHHHHHhcccCCcEEecCCCCCccceEE--EEeecccchhhHH---HHhc
Q 000324 1485 EVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEI--HIQGVDITNFEAR---MQAM 1559 (1665)
Q Consensus 1485 e~~~srl~~i~~~~~~~~riI~lSATl~n~~dl~~wl~~~~~~~~~f~~~~rpv~l~i--~i~~~~~~~~~~~---~~~~ 1559 (1665)
+.+++++ ..+.|+|++|||++|++++++|++... +.+..||+++.. ..+++........ ...+
T Consensus 160 e~il~~l-------~~~~qiI~lSATl~n~~~la~wl~~~~-----~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~ 227 (720)
T PRK00254 160 EMILTHM-------LGRAQILGLSATVGNAEELAEWLNAEL-----VVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSW 227 (720)
T ss_pred HHHHHhc-------CcCCcEEEEEccCCCHHHHHHHhCCcc-----ccCCCCCCcceeeEecCCeeeccCcchhcchHHH
Confidence 8887764 457899999999999999999998753 567789988853 3333322111110 1122
Q ss_pred ChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCC-cccchhhHhh----hhHHHHHHHhcc
Q 000324 1560 TKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWP-AEEVEPFIDN----IQEEMLKATLRH 1634 (1665)
Q Consensus 1560 ~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~-~~~l~~~~~~----i~d~~L~~~l~~ 1634 (1665)
... +...+..++++||||+||++|+.+|..|...+.. ++..+ .+.+..+.+. ..+..|++.+.+
T Consensus 228 ~~~----~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 296 (720)
T PRK00254 228 ESL----VYDAVKKGKGALVFVNTRRSAEKEALELAKKIKR-------FLTKPELRALKELADSLEENPTNEKLKKALRG 296 (720)
T ss_pred HHH----HHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHH-------hcCchhHHHHHHHHHHHhcCCCcHHHHHHHhh
Confidence 222 2333345789999999999999999999765431 22221 1233334333 356788999999
Q ss_pred cEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1635 GVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1635 gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
||++|||||++.+|..++++|++|.++||||
T Consensus 297 gv~~hHagl~~~eR~~ve~~F~~G~i~VLva 327 (720)
T PRK00254 297 GVAFHHAGLGRTERVLIEDAFREGLIKVITA 327 (720)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHCCCCeEEEe
Confidence 9999999999999999999999999999998
No 54
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-36 Score=337.19 Aligned_cols=336 Identities=19% Similarity=0.305 Sum_probs=256.2
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
.||.+|+|||+++.|.+|++.+ ++..|.||+|||++|++|-+-++.......+ +..++.+|+++||++||.|+....
T Consensus 238 ~GFqKPtPIqSQaWPI~LQG~D-liGVAQTgtgKtL~~L~pg~ihi~aqp~~~~--qr~~p~~lvl~ptreLalqie~e~ 314 (629)
T KOG0336|consen 238 TGFQKPTPIQSQAWPILLQGID-LIGVAQTGTGKTLAFLLPGFIHIDAQPKRRE--QRNGPGVLVLTPTRELALQIEGEV 314 (629)
T ss_pred ccCCCCCcchhcccceeecCcc-eEEEEecCCCcCHHHhccceeeeeccchhhh--ccCCCceEEEeccHHHHHHHHhHH
Confidence 5999999999999999999877 9999999999999999998776654332222 335678999999999999998887
Q ss_pred HHhhccCCcEEEEEECCCcccHhh---hccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc-CCchHHHHH
Q 000324 571 SNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESI 646 (1665)
Q Consensus 571 ~~~~~~~gi~V~~ltGd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~i 646 (1665)
.+. ...|.+..++.|+.+...+. ..+..|+++||++|..|..... ..+..+.++|+|||+.|+| +|.|.+..|
T Consensus 315 ~ky-syng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~--i~l~siTYlVlDEADrMLDMgFEpqIrki 391 (629)
T KOG0336|consen 315 KKY-SYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNV--INLASITYLVLDEADRMLDMGFEPQIRKI 391 (629)
T ss_pred hHh-hhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCe--eeeeeeEEEEecchhhhhcccccHHHHHH
Confidence 764 34477777788877665542 3578999999999855544332 4678899999999999999 788877665
Q ss_pred HHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCcccc---ceEEEEeeecCchhHHHHHHHHHH
Q 000324 647 VARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVP---LSQQYIGIQVKKPLQRFQLMNDLC 723 (1665)
Q Consensus 647 v~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~---l~~~~~~~~~~~~~~~~~~~~~~~ 723 (1665)
+-- ..++.++++.|||.|. .|.+........++..+..+..-+. +.|.++ ++. ...++..+..
T Consensus 392 lld-------iRPDRqtvmTSATWP~--~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~-v~~--d~~k~~~~~~-- 457 (629)
T KOG0336|consen 392 LLD-------IRPDRQTVMTSATWPE--GVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNII-VTT--DSEKLEIVQF-- 457 (629)
T ss_pred hhh-------cCCcceeeeecccCch--HHHHHHHHhhhCceEEEecccceeeeeeeeeeEE-ecc--cHHHHHHHHH--
Confidence 543 4678999999999995 3444433333444555555544332 333332 222 2233333222
Q ss_pred HHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCC
Q 000324 724 YEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAG 803 (1665)
Q Consensus 724 ~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hag 803 (1665)
.+.......++||||.++.-|..+...|+-.++.... +||+
T Consensus 458 --f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~-------------------------------------lHG~ 498 (629)
T KOG0336|consen 458 --FVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQS-------------------------------------LHGN 498 (629)
T ss_pred --HHHhcCCCceEEEEEechhhhhhccchhhhcccchhh-------------------------------------ccCC
Confidence 2334455779999999998887777666655444332 3999
Q ss_pred CCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEE
Q 000324 804 MTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883 (1665)
Q Consensus 804 m~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~i 883 (1665)
-.+.||+..++.|++|.++|||||+.+++|+|+|++++|++ ||.|. .+.+|+||+||+||+| +.|.++
T Consensus 499 r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~N----yDFP~------nIeeYVHRvGrtGRaG--r~G~si 566 (629)
T KOG0336|consen 499 REQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYN----YDFPR------NIEEYVHRVGRTGRAG--RTGTSI 566 (629)
T ss_pred hhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeec----cCCCc------cHHHHHHHhcccccCC--CCcceE
Confidence 99999999999999999999999999999999999999999 99886 8999999999999999 899999
Q ss_pred EEeCCCcHHHHHHh
Q 000324 884 IITGHSELRYYLSL 897 (1665)
Q Consensus 884 il~~~~~~~~y~~l 897 (1665)
.+.+..+......+
T Consensus 567 s~lt~~D~~~a~eL 580 (629)
T KOG0336|consen 567 SFLTRNDWSMAEEL 580 (629)
T ss_pred EEEehhhHHHHHHH
Confidence 99998887766544
No 55
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-35 Score=341.12 Aligned_cols=346 Identities=23% Similarity=0.308 Sum_probs=250.7
Q ss_pred CCCCCCCHHHHHHHHHHHcC--------CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHH
Q 000324 491 KGMTQLNRVQSRVYKSALSS--------ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (1665)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~--------~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raL 562 (1665)
.+++.+.|+|..+++.++.. ..++.|.||||||||++|.+||++.+.... .+..++|+|+|+++|
T Consensus 155 ~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~-------v~~LRavVivPtr~L 227 (620)
T KOG0350|consen 155 MAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP-------VKRLRAVVIVPTREL 227 (620)
T ss_pred hhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCC-------ccceEEEEEeeHHHH
Confidence 56889999999999998642 246999999999999999999999987642 235799999999999
Q ss_pred HHHHHHHHHHhhccCCcEEEEEECCCcccHhhh--------ccccEEEeChhhH-HHHHhhcCCCccccceeEEEEeccc
Q 000324 563 VAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQI--------EETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIH 633 (1665)
Q Consensus 563 a~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~~--------~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH 633 (1665)
+.|+++.|.++....|+.|+.++|..++..+.. ...+|+|+||+++ |+|..-.+ ..+++++++||||||
T Consensus 228 ~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~--f~Lk~LrfLVIDEAD 305 (620)
T KOG0350|consen 228 ALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKS--FDLKHLRFLVIDEAD 305 (620)
T ss_pred HHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCC--cchhhceEEEechHH
Confidence 999999999999999999999999998876532 1349999999997 77764332 578999999999999
Q ss_pred cccc-CCchHHHHHHHHHH------------HHHh---------------hccCCeeEEEEcccCCC-hHHHHHHHhccc
Q 000324 634 LLHD-NRGPVLESIVARTV------------RQIE---------------TTKEHIRLVGLSATLPN-YEDVALFLRVNL 684 (1665)
Q Consensus 634 ~l~d-~rg~~le~iv~r~~------------~~~~---------------~~~~~~riV~lSATl~n-~~dv~~~l~~~~ 684 (1665)
+|++ .|...+..+...+. ++.. ...++...+.+|||+.. +..+..+--..|
T Consensus 306 Rll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~P 385 (620)
T KOG0350|consen 306 RLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIP 385 (620)
T ss_pred HHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCC
Confidence 9987 34333333332221 1100 01223346777888763 444444332222
Q ss_pred cCceEEec----CCCc-cccceEEEEeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhh
Q 000324 685 EKGLFYFD----NSYR-PVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALE 759 (1665)
Q Consensus 685 ~~~~~~f~----~~~r-pv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~ 759 (1665)
. +|... ..|+ |-.+....+.....-.. ..+|.. .......++|+|+++...+.+++..|.-...+
T Consensus 386 r--l~~v~~~~~~ryslp~~l~~~~vv~~~~~kp-------l~~~~l-I~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~ 455 (620)
T KOG0350|consen 386 R--LFHVSKPLIGRYSLPSSLSHRLVVTEPKFKP-------LAVYAL-ITSNKLNRTLCFVNSVSSANRLAHVLKVEFCS 455 (620)
T ss_pred c--eEEeecccceeeecChhhhhceeecccccch-------HhHHHH-HHHhhcceEEEEecchHHHHHHHHHHHHHhcc
Confidence 1 22222 1122 22233333222221100 112322 23344679999999999999999988732211
Q ss_pred ccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCce
Q 000324 760 NDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAH 839 (1665)
Q Consensus 760 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v 839 (1665)
. ...+..+.|+++...|...++.|+.|.++|||||++++||+|+-++
T Consensus 456 ~---------------------------------~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v 502 (620)
T KOG0350|consen 456 D---------------------------------NFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDV 502 (620)
T ss_pred c---------------------------------cchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCccccc
Confidence 1 0123335899999999999999999999999999999999999999
Q ss_pred EEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcHHHHHHhhcC
Q 000324 840 TVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQ 900 (1665)
Q Consensus 840 ~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~ 900 (1665)
++||+ ||+|. +...|+||+||+||+| ..|.|+.+....+...|.+++..
T Consensus 503 ~~VIN----Yd~P~------~~ktyVHR~GRTARAg--q~G~a~tll~~~~~r~F~klL~~ 551 (620)
T KOG0350|consen 503 DNVIN----YDPPA------SDKTYVHRAGRTARAG--QDGYAITLLDKHEKRLFSKLLKK 551 (620)
T ss_pred ceEee----cCCCc------hhhHHHHhhccccccc--CCceEEEeeccccchHHHHHHHH
Confidence 99999 99986 8999999999999999 77999999999888888776543
No 56
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=6.3e-35 Score=383.56 Aligned_cols=443 Identities=17% Similarity=0.176 Sum_probs=284.7
Q ss_pred HHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc-cCCcE
Q 000324 502 RVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVK 580 (1665)
Q Consensus 502 ~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~-~~gi~ 580 (1665)
+.|..++.+++.++|+|+||||||+. +|.+-.- ... | ...+|++..|+|-.|.+++.++.+.++ .+|-.
T Consensus 80 ~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle-~g~---g----~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~ 149 (1294)
T PRK11131 80 QDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLE-LGR---G----VKGLIGHTQPRRLAARTVANRIAEELETELGGC 149 (1294)
T ss_pred HHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHH-cCC---C----CCCceeeCCCcHHHHHHHHHHHHHHHhhhhcce
Confidence 34555677788899999999999994 5532111 111 1 123688889987666666666665554 23444
Q ss_pred EEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccc-ccc-CCchHHHHHHHHHHHHHhhcc
Q 000324 581 VRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL-LHD-NRGPVLESIVARTVRQIETTK 658 (1665)
Q Consensus 581 V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~-l~d-~rg~~le~iv~r~~~~~~~~~ 658 (1665)
|+.-+ ..+.+....++|+|+||+.+-.... ....++.+++|||||||. ..+ ++ +..++.++ .. ..
T Consensus 150 VGY~v---rf~~~~s~~t~I~v~TpG~LL~~l~---~d~~Ls~~~~IIIDEAHERsLn~Df---LLg~Lk~l---L~-~r 216 (1294)
T PRK11131 150 VGYKV---RFNDQVSDNTMVKLMTDGILLAEIQ---QDRLLMQYDTIIIDEAHERSLNIDF---ILGYLKEL---LP-RR 216 (1294)
T ss_pred eceee---cCccccCCCCCEEEEChHHHHHHHh---cCCccccCcEEEecCccccccccch---HHHHHHHh---hh-cC
Confidence 44322 2233334579999999998532222 224689999999999994 333 22 11222222 22 23
Q ss_pred CCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCch---hHHHHHHHHHHHHHHHHHhCCCe
Q 000324 659 EHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKP---LQRFQLMNDLCYEKVVAVAGKHQ 735 (1665)
Q Consensus 659 ~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~ 735 (1665)
++.|+|+||||+ +.+.++++++..+ ++...+ +..|+.+.|........ ...+..+...+.. + ...+.++
T Consensus 217 pdlKvILmSATi-d~e~fs~~F~~ap---vI~V~G--r~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~-l-~~~~~Gd 288 (1294)
T PRK11131 217 PDLKVIITSATI-DPERFSRHFNNAP---IIEVSG--RTYPVEVRYRPIVEEADDTERDQLQAIFDAVDE-L-GREGPGD 288 (1294)
T ss_pred CCceEEEeeCCC-CHHHHHHHcCCCC---EEEEcC--ccccceEEEeecccccchhhHHHHHHHHHHHHH-H-hcCCCCC
Confidence 578999999999 4677888776443 444443 34455666654332111 1112222111111 1 1234678
Q ss_pred EEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHH
Q 000324 736 VLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDL 815 (1665)
Q Consensus 736 vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~ 815 (1665)
+||||+++.++..++..|...+.. ...|..+||+|+..+|..+++.
T Consensus 289 ILVFLpg~~EIe~lae~L~~~~~~----------------------------------~~~VlpLhg~Ls~~eQ~~Vf~~ 334 (1294)
T PRK11131 289 ILIFMSGEREIRDTADALNKLNLR----------------------------------HTEILPLYARLSNSEQNRVFQS 334 (1294)
T ss_pred EEEEcCCHHHHHHHHHHHHhcCCC----------------------------------cceEeecccCCCHHHHHHHhcc
Confidence 999999999999999998764311 1236678999999999999886
Q ss_pred HhCCCCCeEEeccccccccCCCceEEEEec----ccccCCCCCC----cccCCHHHHHhhhcccCCCCCCCceEEEEEeC
Q 000324 816 FGDGHVQVLVSTATLAWGVNLPAHTVIIKG----TQIYNPEKGA----WTELSPLDIMQMLGRAGRPQYDSYGEGIIITG 887 (1665)
Q Consensus 816 F~~g~i~VLVaT~tla~GVdlP~v~vVI~~----t~~yd~~~g~----~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~ 887 (1665)
.|..+|||||+++++|||+|++++||+. ...||+..+- ..++|..+|.||+|||||.+ .|.||.+++
T Consensus 335 --~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~---~G~c~rLyt 409 (1294)
T PRK11131 335 --HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS---EGICIRLYS 409 (1294)
T ss_pred --cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC---CcEEEEeCC
Confidence 5789999999999999999999999995 3568877652 35688999999999999974 899999999
Q ss_pred CCcHHHHHHhhcCCCccccchhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHH
Q 000324 888 HSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGER 967 (1665)
Q Consensus 888 ~~~~~~y~~ll~~~~piES~l~~~l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~ 967 (1665)
..+.. .+-. .+...-+...|...+..-..+|. . ++..+. +.+.|
T Consensus 410 e~d~~---~~~~--~~~PEIlR~~L~~viL~lk~lgl-~--------------------di~~F~-----fldpP----- 453 (1294)
T PRK11131 410 EDDFL---SRPE--FTDPEILRTNLASVILQMTALGL-G--------------------DIAAFP-----FVEAP----- 453 (1294)
T ss_pred HHHHH---hhhc--ccCCccccCCHHHHHHHHHHcCC-C--------------------Ccceee-----CCCCC-----
Confidence 76533 2211 11122222223332222222221 1 111110 01111
Q ss_pred HHHHHHHHHHHHhHcCCcccccCCCccccChHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHhcCCccCCCCcCChh
Q 000324 968 RADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQD 1047 (1665)
Q Consensus 968 ~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~~s~s~Ef~~i~~R~~ 1047 (1665)
-.+.|..|+..|.+.|+|+.++.++...+|++|+.+|.+|++|...+++..+....|. .+++.|.|+-+ ..++..|+.
T Consensus 454 ~~~~i~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~-~evl~IaA~Ls-v~dpf~~p~ 531 (1294)
T PRK11131 454 DKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCV-REVMIITSALS-IQDPRERPM 531 (1294)
T ss_pred CHHHHHHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCH-HHHHHHHHHHc-CCCcccCCc
Confidence 1256889999999999998654334568999999999999999999999988777765 56666655533 356677776
Q ss_pred HHHHH
Q 000324 1048 EKMEL 1052 (1665)
Q Consensus 1048 E~~~l 1052 (1665)
++.+-
T Consensus 532 ~~~~~ 536 (1294)
T PRK11131 532 DKQQA 536 (1294)
T ss_pred hhHHH
Confidence 66543
No 57
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.2e-34 Score=380.54 Aligned_cols=308 Identities=29% Similarity=0.456 Sum_probs=242.3
Q ss_pred cchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHH
Q 000324 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (1665)
Q Consensus 1327 L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q 1405 (1665)
|++...+.+.. +|. ++|+|++|++.+.. ++|++++||||||||++|++++++.+.. ++ ++|||+|+++||.|
T Consensus 8 l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~-~~nvlv~apTGSGKTl~a~lail~~l~~---~~--k~v~i~P~raLa~q 80 (674)
T PRK01172 8 YDDEFLNLFTGNDFE-LYDHQRMAIEQLRK-GENVIVSVPTAAGKTLIAYSAIYETFLA---GL--KSIYIVPLRSLAME 80 (674)
T ss_pred CCHHHHHHHhhCCCC-CCHHHHHHHHHHhc-CCcEEEECCCCchHHHHHHHHHHHHHHh---CC--cEEEEechHHHHHH
Confidence 44555555544 455 99999999999865 5569999999999999999999998876 23 89999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCC-CCchhH
Q 000324 1406 RYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVL 1484 (1665)
Q Consensus 1406 ~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~-~~g~~~ 1484 (1665)
++++|+ ++.. .|.++..++|+...+...++.++|+|+|||+|+.++++|. ..++++++||+||+|++++ .+|+.+
T Consensus 81 ~~~~~~-~l~~-~g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~--~~l~~v~lvViDEaH~l~d~~rg~~l 156 (674)
T PRK01172 81 KYEELS-RLRS-LGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDP--YIINDVGLIVADEIHIIGDEDRGPTL 156 (674)
T ss_pred HHHHHH-HHhh-cCCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCCh--hHHhhcCEEEEecchhccCCCccHHH
Confidence 999999 4543 5789999999988776677888999999999999998854 4588999999999999986 569999
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEcccCCChHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcChhHH
Q 000324 1485 EVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTF 1564 (1665)
Q Consensus 1485 e~~~srl~~i~~~~~~~~riI~lSATl~n~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~ 1564 (1665)
+.++++++++ ..+.|+|++|||++|+.++++|+++.. |.+..||+|+.+.+............ .......
T Consensus 157 e~ll~~~~~~----~~~~riI~lSATl~n~~~la~wl~~~~-----~~~~~r~vpl~~~i~~~~~~~~~~~~-~~~~~~~ 226 (674)
T PRK01172 157 ETVLSSARYV----NPDARILALSATVSNANELAQWLNASL-----IKSNFRPVPLKLGILYRKRLILDGYE-RSQVDIN 226 (674)
T ss_pred HHHHHHHHhc----CcCCcEEEEeCccCCHHHHHHHhCCCc-----cCCCCCCCCeEEEEEecCeeeecccc-cccccHH
Confidence 9999888765 457999999999999999999998753 66778999998776543322111000 0111123
Q ss_pred HHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCC
Q 000324 1565 TAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLN 1644 (1665)
Q Consensus 1565 ~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~ 1644 (1665)
..+......++++||||+|+++|+.+|..|...+..... +.. ..+ .....+..|++++.+||++|||+|+
T Consensus 227 ~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~----~~~-~~~-----~~~~~~~~L~~~l~~gv~~~hagl~ 296 (674)
T PRK01172 227 SLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFND----FKV-SSE-----NNNVYDDSLNEMLPHGVAFHHAGLS 296 (674)
T ss_pred HHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhccc----ccc-ccc-----ccccccHHHHHHHhcCEEEecCCCC
Confidence 334444466789999999999999999999765442211 110 001 1233467888999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEC
Q 000324 1645 KTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1645 ~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
+.+|..+++.|++|.++||||
T Consensus 297 ~~eR~~ve~~f~~g~i~VLva 317 (674)
T PRK01172 297 NEQRRFIEEMFRNRYIKVIVA 317 (674)
T ss_pred HHHHHHHHHHHHcCCCeEEEe
Confidence 999999999999999999998
No 58
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-34 Score=331.12 Aligned_cols=335 Identities=19% Similarity=0.277 Sum_probs=261.5
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
..|++++|+|-+++|.++.+.+ |+-.|-||||||.+|+.|++-+++....- ...+++..||++|||+||.|++.+.
T Consensus 241 ~Ey~kptpiq~qalptalsgrd-vigIAktgSgktaAfi~pm~~himdq~eL---~~g~gPi~vilvPTrela~Qi~~ea 316 (731)
T KOG0339|consen 241 SEYEKPTPIQCQALPTALSGRD-VIGIAKTGSGKTAAFIWPMIVHIMDQPEL---KPGEGPIGVILVPTRELASQIFSEA 316 (731)
T ss_pred hhcccCCccccccccccccccc-chheeeccCcchhHHHHHHHHHhcchhhh---cCCCCCeEEEEeccHHHHHHHHHHH
Confidence 3588999999999999998877 99999999999999999999988764321 1235789999999999999999999
Q ss_pred HHhhccCCcEEEEEECCCcccHhh---hccccEEEeChhhH-HHHHhhcCCCccccceeEEEEeccccccc-CCchHHHH
Q 000324 571 SNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLES 645 (1665)
Q Consensus 571 ~~~~~~~gi~V~~ltGd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~ 645 (1665)
+++.+.+|+++..++|+.+...+. ..++.||||||+++ |++.-+.. .+.++.++||||++.|.+ ++-+...+
T Consensus 317 Kkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKat---n~~rvS~LV~DEadrmfdmGfe~qVrS 393 (731)
T KOG0339|consen 317 KKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKAT---NLSRVSYLVLDEADRMFDMGFEPQVRS 393 (731)
T ss_pred HHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcc---cceeeeEEEEechhhhhccccHHHHHH
Confidence 998899999999999999887653 25899999999996 77776654 678899999999999998 67777777
Q ss_pred HHHHHHHHHhhccCCeeEEEEcccCCC-hHHHHHHHhccccCceEEecCCC--ccccceEEEEeeecCchhHHHHHHHHH
Q 000324 646 IVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSY--RPVPLSQQYIGIQVKKPLQRFQLMNDL 722 (1665)
Q Consensus 646 iv~r~~~~~~~~~~~~riV~lSATl~n-~~dv~~~l~~~~~~~~~~f~~~~--rpv~l~~~~~~~~~~~~~~~~~~~~~~ 722 (1665)
|...+ .++.|.++||||++- .+.+++-+-..| +-.+..+. ....+.|.+..+.. ..++++.+.
T Consensus 394 I~~hi-------rpdrQtllFsaTf~~kIe~lard~L~dp---VrvVqg~vgean~dITQ~V~V~~s--~~~Kl~wl~-- 459 (731)
T KOG0339|consen 394 IKQHI-------RPDRQTLLFSATFKKKIEKLARDILSDP---VRVVQGEVGEANEDITQTVSVCPS--EEKKLNWLL-- 459 (731)
T ss_pred HHhhc-------CCcceEEEeeccchHHHHHHHHHHhcCC---eeEEEeehhccccchhheeeeccC--cHHHHHHHH--
Confidence 66644 678999999999974 333332222222 22222211 11223333332222 222333222
Q ss_pred HHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecC
Q 000324 723 CYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA 802 (1665)
Q Consensus 723 ~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Ha 802 (1665)
..+......+++||||.-+..+++++..|.-.+ +.|+.+||
T Consensus 460 --~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~-------------------------------------~~v~llhg 500 (731)
T KOG0339|consen 460 --RHLVEFSSEGKVLIFVTKKADAEEIAANLKLKG-------------------------------------FNVSLLHG 500 (731)
T ss_pred --HHhhhhccCCcEEEEEeccCCHHHHHHHhcccc-------------------------------------ceeeeecC
Confidence 223344457899999999999999998877554 34677799
Q ss_pred CCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEE
Q 000324 803 GMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 882 (1665)
Q Consensus 803 gm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~ 882 (1665)
.|.+.+|..++..|+.+...|||+|+++++|+|+|.+.-||+ ||.-. ++..+.||+||+||.| ..|.+
T Consensus 501 dkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvn----yD~ar------dIdththrigrtgRag--~kGva 568 (731)
T KOG0339|consen 501 DKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVN----YDFAR------DIDTHTHRIGRTGRAG--EKGVA 568 (731)
T ss_pred chhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeec----ccccc------hhHHHHHHhhhccccc--cccee
Confidence 999999999999999999999999999999999999999999 88765 8899999999999998 67999
Q ss_pred EEEeCCCcHHHHHHh
Q 000324 883 IIITGHSELRYYLSL 897 (1665)
Q Consensus 883 iil~~~~~~~~y~~l 897 (1665)
+.++++.+.++.-.+
T Consensus 569 yTlvTeKDa~fAG~L 583 (731)
T KOG0339|consen 569 YTLVTEKDAEFAGHL 583 (731)
T ss_pred eEEechhhHHHhhHH
Confidence 999999887654333
No 59
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=3.2e-34 Score=378.74 Aligned_cols=441 Identities=17% Similarity=0.187 Sum_probs=290.0
Q ss_pred HHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEE
Q 000324 502 RVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKV 581 (1665)
Q Consensus 502 ~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V 581 (1665)
..|..++.+++.+||+|+||||||+.....++.. .. + ...+|+++.|+|-.|..++.++.+.+ |..+
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~---~~---~----~~~~I~~tQPRRlAA~svA~RvA~el---g~~l 139 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQLPKICLEL---GR---G----SHGLIGHTQPRRLAARTVAQRIAEEL---GTPL 139 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHc---CC---C----CCceEecCCccHHHHHHHHHHHHHHh---CCCc
Confidence 3445567778889999999999999654444331 11 1 13478999999999999999988765 4555
Q ss_pred EEEECC-CcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccc-cccCCchHHHHHHHHHHHHHhhccC
Q 000324 582 RELSGD-QTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL-LHDNRGPVLESIVARTVRQIETTKE 659 (1665)
Q Consensus 582 ~~ltGd-~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~-l~d~rg~~le~iv~r~~~~~~~~~~ 659 (1665)
+..+|. ...+.+....++|+|+||+.+ ++.......++.+++|||||||. ..+ .+.++..+..... ..+
T Consensus 140 G~~VGY~vR~~~~~s~~T~I~~~TdGiL---Lr~l~~d~~L~~~~~IIIDEaHERsL~-----~D~LL~lLk~il~-~rp 210 (1283)
T TIGR01967 140 GEKVGYKVRFHDQVSSNTLVKLMTDGIL---LAETQQDRFLSRYDTIIIDEAHERSLN-----IDFLLGYLKQLLP-RRP 210 (1283)
T ss_pred ceEEeeEEcCCcccCCCceeeeccccHH---HHHhhhCcccccCcEEEEcCcchhhcc-----chhHHHHHHHHHh-hCC
Confidence 555552 344444456799999999964 33333345789999999999994 332 2223332222222 346
Q ss_pred CeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCc---hhHHHHHHHHHHHHHHHHHhCCCeE
Q 000324 660 HIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKK---PLQRFQLMNDLCYEKVVAVAGKHQV 736 (1665)
Q Consensus 660 ~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~v 736 (1665)
+.|+|+||||+ +.+.++++++..+ ++...+ +..|+...|....... .......+...+.. +.. ...+++
T Consensus 211 dLKlIlmSATl-d~~~fa~~F~~ap---vI~V~G--r~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~-l~~-~~~GdI 282 (1283)
T TIGR01967 211 DLKIIITSATI-DPERFSRHFNNAP---IIEVSG--RTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDE-LFA-EGPGDI 282 (1283)
T ss_pred CCeEEEEeCCc-CHHHHHHHhcCCC---EEEECC--CcccceeEEecccccccchhhhHHHHHHHHHHH-HHh-hCCCCE
Confidence 78999999999 4678888886543 444443 4445555555432211 11122222222222 111 246799
Q ss_pred EEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHH
Q 000324 737 LIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLF 816 (1665)
Q Consensus 737 LVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F 816 (1665)
|||+++++++..++..|...... ...|..+||+|+.++|..+++.+
T Consensus 283 LVFLpg~~EI~~l~~~L~~~~~~----------------------------------~~~VlpLhg~Ls~~eQ~~vf~~~ 328 (1283)
T TIGR01967 283 LIFLPGEREIRDAAEILRKRNLR----------------------------------HTEILPLYARLSNKEQQRVFQPH 328 (1283)
T ss_pred EEeCCCHHHHHHHHHHHHhcCCC----------------------------------CcEEEeccCCCCHHHHHHHhCCC
Confidence 99999999999999998764311 12367789999999999997654
Q ss_pred hCCCCCeEEeccccccccCCCceEEEEecc----cccCCCCCC----cccCCHHHHHhhhcccCCCCCCCceEEEEEeCC
Q 000324 817 GDGHVQVLVSTATLAWGVNLPAHTVIIKGT----QIYNPEKGA----WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (1665)
Q Consensus 817 ~~g~i~VLVaT~tla~GVdlP~v~vVI~~t----~~yd~~~g~----~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (1665)
+..+|||||+++++|||+|++++||+.. ..||+.+|- ..++|.++|.||+|||||.| .|.||.+++.
T Consensus 329 --~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte 403 (1283)
T TIGR01967 329 --SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSE 403 (1283)
T ss_pred --CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCH
Confidence 3479999999999999999999999953 567777652 25789999999999999986 8999999997
Q ss_pred CcHHHHHHhhcCCCccccchhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHH
Q 000324 889 SELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERR 968 (1665)
Q Consensus 889 ~~~~~y~~ll~~~~piES~l~~~l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~ 968 (1665)
.+..... ....| .-+...|...+..-...|. . ++.-+. .+..+.
T Consensus 404 ~~~~~~~---~~~~P--EIlR~~L~~viL~l~~lg~-~--------------------di~~f~----------fldpP~ 447 (1283)
T TIGR01967 404 EDFNSRP---EFTDP--EILRTNLASVILQMLALRL-G--------------------DIAAFP----------FIEAPD 447 (1283)
T ss_pred HHHHhhh---hccCc--ccccccHHHHHHHHHhcCC-C--------------------Cccccc----------CCCCCC
Confidence 6543321 11112 1111222222222112221 1 111110 011111
Q ss_pred HHHHHHHHHHHhHcCCcccccCCCccccChHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHhcCCccCCCCcCChhH
Q 000324 969 ADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDE 1048 (1665)
Q Consensus 969 ~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~~s~s~Ef~~i~~R~~E 1048 (1665)
.+.|..|+..|...|+|+.++ +...+|++|+.+|.++++|...+++..+....|. .+++.|.|+-++ .++..|+.+
T Consensus 448 ~~~i~~A~~~L~~LGAld~~~--~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gcl-~e~l~IaA~Ls~-~dp~~~p~~ 523 (1283)
T TIGR01967 448 PRAIRDGFRLLEELGALDDDE--AEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCL-QEVLIIASALSI-QDPRERPME 523 (1283)
T ss_pred HHHHHHHHHHHHHCCCCCCCC--CCccccHHHHHHhhcCCChHHHHHHHHhhhcCCH-HHHHHHHHHHcC-CCcCCCcch
Confidence 356889999999999997543 3367999999999999999999999988776664 556666555443 556666555
Q ss_pred HHH
Q 000324 1049 KME 1051 (1665)
Q Consensus 1049 ~~~ 1051 (1665)
+..
T Consensus 524 ~~~ 526 (1283)
T TIGR01967 524 KQQ 526 (1283)
T ss_pred hHH
Confidence 443
No 60
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=3.7e-35 Score=325.07 Aligned_cols=326 Identities=21% Similarity=0.280 Sum_probs=249.6
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
.|+.++||||.+-+|.++.+.+ +|-.|-||||||++|.||++.........-.-....++..++|+|.|+||.|.++-+
T Consensus 188 KGI~~PTpIQvQGlPvvLsGRD-mIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~ii 266 (610)
T KOG0341|consen 188 KGIVHPTPIQVQGLPVVLSGRD-MIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDII 266 (610)
T ss_pred cCCCCCCceeecCcceEeecCc-eeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHH
Confidence 7999999999999999998877 999999999999999999887654432111112235788999999999999999887
Q ss_pred HHhhccC------CcEEEEEECCCcccHhh---hccccEEEeChhhH-HHHHhhcCCCccccceeEEEEeccccccc-CC
Q 000324 571 SNRLQMY------DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NR 639 (1665)
Q Consensus 571 ~~~~~~~------gi~V~~ltGd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~r 639 (1665)
..++..+ .++...+.|+.....+. ..+.||+|+||+++ |++.++.. .+.-.+++.+|||++|.| +|
T Consensus 267 e~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~---sLd~CRyL~lDEADRmiDmGF 343 (610)
T KOG0341|consen 267 EQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIM---SLDACRYLTLDEADRMIDMGF 343 (610)
T ss_pred HHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhc---cHHHHHHhhhhhHHHHhhccc
Confidence 7766533 36788899999877653 45889999999998 77777654 567789999999999999 78
Q ss_pred chHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHH---
Q 000324 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRF--- 716 (1665)
Q Consensus 640 g~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~--- 716 (1665)
...+..++..+ ....|.+++|||+| ..+..|.+....+ |+.+..--.|...-+.....
T Consensus 344 Eddir~iF~~F-------K~QRQTLLFSATMP--~KIQ~FAkSALVK----------PvtvNVGRAGAAsldViQevEyV 404 (610)
T KOG0341|consen 344 EDDIRTIFSFF-------KGQRQTLLFSATMP--KKIQNFAKSALVK----------PVTVNVGRAGAASLDVIQEVEYV 404 (610)
T ss_pred hhhHHHHHHHH-------hhhhheeeeecccc--HHHHHHHHhhccc----------ceEEecccccccchhHHHHHHHH
Confidence 88888877765 34568899999998 4566666554322 33322211111111111111
Q ss_pred HHHHHHHHHHHHHHhC--CCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcC
Q 000324 717 QLMNDLCYEKVVAVAG--KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLP 794 (1665)
Q Consensus 717 ~~~~~~~~~~i~~~~~--~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~ 794 (1665)
..-++++| +++... ..|+||||..+.++..+.++|--.+...
T Consensus 405 kqEaKiVy--lLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlKGVEa---------------------------------- 448 (610)
T KOG0341|consen 405 KQEAKIVY--LLECLQKTSPPVLIFAEKKADVDDIHEYLLLKGVEA---------------------------------- 448 (610)
T ss_pred Hhhhhhhh--HHHHhccCCCceEEEeccccChHHHHHHHHHcccee----------------------------------
Confidence 11122232 233333 5799999999999999988887655432
Q ss_pred CcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCC
Q 000324 795 YGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRP 874 (1665)
Q Consensus 795 ~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~ 874 (1665)
...|||-.++||....+.|+.|+-+|||||++++.|+|+|++.+||+ ||.|. .+..|+||+||+||.
T Consensus 449 ---vaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVIN----yDMP~------eIENYVHRIGRTGRs 515 (610)
T KOG0341|consen 449 ---VAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVIN----YDMPE------EIENYVHRIGRTGRS 515 (610)
T ss_pred ---EEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhcc----CCChH------HHHHHHHHhcccCCC
Confidence 34599999999999999999999999999999999999999999999 99887 789999999999999
Q ss_pred CCCCceEEEEEeCCCc
Q 000324 875 QYDSYGEGIIITGHSE 890 (1665)
Q Consensus 875 g~d~~G~~iil~~~~~ 890 (1665)
| +.|.+..|.+...
T Consensus 516 g--~~GiATTfINK~~ 529 (610)
T KOG0341|consen 516 G--KTGIATTFINKNQ 529 (610)
T ss_pred C--Ccceeeeeecccc
Confidence 8 8899998887754
No 61
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=4.5e-33 Score=365.28 Aligned_cols=310 Identities=20% Similarity=0.260 Sum_probs=228.6
Q ss_pred CCCCCCHHHHHHHHHHHcC-----CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000324 492 GMTQLNRVQSRVYKSALSS-----ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (1665)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~-----~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~ 566 (1665)
+| ++|++|.+|++.++.+ ..++++|||||||||.+|+++++..+.. +.+++|++||++||.|+
T Consensus 449 ~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~-----------g~qvlvLvPT~~LA~Q~ 516 (926)
T TIGR00580 449 PF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD-----------GKQVAVLVPTTLLAQQH 516 (926)
T ss_pred CC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh-----------CCeEEEEeCcHHHHHHH
Confidence 56 5999999999999875 2469999999999999999999988754 34799999999999999
Q ss_pred HHHHHHhhccCCcEEEEEECCCcccHhh-------hccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCC
Q 000324 567 VGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNR 639 (1665)
Q Consensus 567 ~~~~~~~~~~~gi~V~~ltGd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~r 639 (1665)
++.|+++++.+++++..++|..+...+. ...++|||+||. .+. +. ..++++++|||||+|+++
T Consensus 517 ~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~---ll~-~~---v~f~~L~llVIDEahrfg--- 586 (926)
T TIGR00580 517 FETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHK---LLQ-KD---VKFKDLGLLIIDEEQRFG--- 586 (926)
T ss_pred HHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH---Hhh-CC---CCcccCCEEEeecccccc---
Confidence 9999999998899999999987643221 125899999995 232 21 356889999999999853
Q ss_pred chHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHHH
Q 000324 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLM 719 (1665)
Q Consensus 640 g~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~ 719 (1665)
......+ .....++++++||||+. ...+...+.......++...+.. ..++...+.... . ..+
T Consensus 587 -v~~~~~L-------~~~~~~~~vL~~SATpi-prtl~~~l~g~~d~s~I~~~p~~-R~~V~t~v~~~~---~----~~i 649 (926)
T TIGR00580 587 -VKQKEKL-------KELRTSVDVLTLSATPI-PRTLHMSMSGIRDLSIIATPPED-RLPVRTFVMEYD---P----ELV 649 (926)
T ss_pred -hhHHHHH-------HhcCCCCCEEEEecCCC-HHHHHHHHhcCCCcEEEecCCCC-ccceEEEEEecC---H----HHH
Confidence 2222222 23456789999999953 34444333221111122222221 223443333221 1 111
Q ss_pred HHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEE
Q 000324 720 NDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAI 799 (1665)
Q Consensus 720 ~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~ 799 (1665)
...+.. ....+++++|||++++.+..++..|..... ...++.
T Consensus 650 ~~~i~~---el~~g~qv~if~n~i~~~e~l~~~L~~~~p-----------------------------------~~~v~~ 691 (926)
T TIGR00580 650 REAIRR---ELLRGGQVFYVHNRIESIEKLATQLRELVP-----------------------------------EARIAI 691 (926)
T ss_pred HHHHHH---HHHcCCeEEEEECCcHHHHHHHHHHHHhCC-----------------------------------CCeEEE
Confidence 111111 123478999999999999999888876421 135889
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCc
Q 000324 800 HHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSY 879 (1665)
Q Consensus 800 ~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~ 879 (1665)
+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||. ++++. ++..+|.||+||+||.| ..
T Consensus 692 lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi----~~a~~-----~gls~l~Qr~GRvGR~g--~~ 760 (926)
T TIGR00580 692 AHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIII----ERADK-----FGLAQLYQLRGRVGRSK--KK 760 (926)
T ss_pred ecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEE----ecCCC-----CCHHHHHHHhcCCCCCC--CC
Confidence 999999999999999999999999999999999999999999998 66654 36778999999999987 78
Q ss_pred eEEEEEeCCC
Q 000324 880 GEGIIITGHS 889 (1665)
Q Consensus 880 G~~iil~~~~ 889 (1665)
|.||+++++.
T Consensus 761 g~aill~~~~ 770 (926)
T TIGR00580 761 AYAYLLYPHQ 770 (926)
T ss_pred eEEEEEECCc
Confidence 9999998764
No 62
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-33 Score=319.61 Aligned_cols=341 Identities=18% Similarity=0.259 Sum_probs=255.3
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEccc
Q 000324 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1665)
Q Consensus 482 Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (1665)
|++.+.++. .||..+|-||+.+||-++++.+ ++..|.||||||.+|++|+++.+......+ -...++.+++++||
T Consensus 26 LD~RllkAi~~lG~ekpTlIQs~aIplaLEgKD-vvarArTGSGKT~AYliPllqkll~~k~t~--~~e~~~sa~iLvPT 102 (569)
T KOG0346|consen 26 LDSRLLKAITKLGWEKPTLIQSSAIPLALEGKD-VVARARTGSGKTAAYLIPLLQKLLAEKKTN--DGEQGPSAVILVPT 102 (569)
T ss_pred CCHHHHHHHHHhCcCCcchhhhcccchhhcCcc-eeeeeccCCCchHHHHHHHHHHHHHhhhcc--cccccceeEEEech
Confidence 444555554 5999999999999999999875 999999999999999999999998765432 23457789999999
Q ss_pred HHHHHHHHHHHHHhhccCC--cEEEEEECCCcccHh---hhccccEEEeChhhH-HHHHhhcCCCccccceeEEEEeccc
Q 000324 560 KALVAEVVGNLSNRLQMYD--VKVRELSGDQTLTRQ---QIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIH 633 (1665)
Q Consensus 560 raLa~q~~~~~~~~~~~~g--i~V~~ltGd~~~~~~---~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH 633 (1665)
|+||+|++..+.++...++ +++.-++.+++-+.. ....++|+|+||.++ ..+.-... ..+..++++|+||||
T Consensus 103 kEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~--~~~~~l~~LVvDEAD 180 (569)
T KOG0346|consen 103 KELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVL--EYLDSLSFLVVDEAD 180 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccc--hhhhheeeEEechhh
Confidence 9999999999988766443 555556655543332 346899999999996 33333222 578889999999999
Q ss_pred cccc-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCC-hHHHHHHHhccccCceEEecCCCcc--ccceEEEEeeec
Q 000324 634 LLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYRP--VPLSQQYIGIQV 709 (1665)
Q Consensus 634 ~l~d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n-~~dv~~~l~~~~~~~~~~f~~~~rp--v~l~~~~~~~~~ 709 (1665)
++.. ++...+..+. ..+++..|.++||||+.+ ...+...+..+|. +..+....-| ..+.|+++.+.+
T Consensus 181 LllsfGYeedlk~l~-------~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPv--iLkl~e~el~~~dqL~Qy~v~cse 251 (569)
T KOG0346|consen 181 LLLSFGYEEDLKKLR-------SHLPRIYQCFLMSATLSDDVQALKKLFLHNPV--ILKLTEGELPNPDQLTQYQVKCSE 251 (569)
T ss_pred hhhhcccHHHHHHHH-------HhCCchhhheeehhhhhhHHHHHHHHhccCCe--EEEeccccCCCcccceEEEEEecc
Confidence 9986 4433333333 345788899999999973 3333333333332 3344444333 567777776664
Q ss_pred CchhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchh
Q 000324 710 KKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (1665)
Q Consensus 710 ~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l 789 (1665)
... +.. +|..+.-..-.+++||||||...|.++-..|...++..
T Consensus 252 ~DK---fll----lyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiks----------------------------- 295 (569)
T KOG0346|consen 252 EDK---FLL----LYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKS----------------------------- 295 (569)
T ss_pred chh---HHH----HHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHh-----------------------------
Confidence 432 221 22222222226899999999999999998888776543
Q ss_pred hhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccc-----------------------------------ccccc
Q 000324 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTAT-----------------------------------LAWGV 834 (1665)
Q Consensus 790 ~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~t-----------------------------------la~GV 834 (1665)
.++.|.|+..-|..+++.|..|..+++|||+. .+|||
T Consensus 296 --------ciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGI 367 (569)
T KOG0346|consen 296 --------CILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGI 367 (569)
T ss_pred --------hhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccc
Confidence 34489999999999999999999999999981 46999
Q ss_pred CCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcHH
Q 000324 835 NLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR 892 (1665)
Q Consensus 835 dlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~ 892 (1665)
|+..|..||+ ||.|. ++..|+||+||++|.+ +.|.++.++.+.+..
T Consensus 368 DF~~V~~VlN----FD~P~------t~~sYIHRvGRTaRg~--n~GtalSfv~P~e~~ 413 (569)
T KOG0346|consen 368 DFHHVSNVLN----FDFPE------TVTSYIHRVGRTARGN--NKGTALSFVSPKEEF 413 (569)
T ss_pred cchheeeeee----cCCCC------chHHHHHhccccccCC--CCCceEEEecchHHh
Confidence 9999999999 99887 8999999999999987 889999999886644
No 63
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=8.3e-33 Score=359.94 Aligned_cols=307 Identities=23% Similarity=0.313 Sum_probs=220.4
Q ss_pred CCCCCHHHHHHHHHHHcCC-----CcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHH
Q 000324 493 MTQLNRVQSRVYKSALSSA-----DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (1665)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~-----~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~ 567 (1665)
| +||++|.++++.+..+- .|+|++||||||||.+|+++++..+.. +.+++|++||++||.|++
T Consensus 260 f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~-----------g~q~lilaPT~~LA~Q~~ 327 (681)
T PRK10917 260 F-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA-----------GYQAALMAPTEILAEQHY 327 (681)
T ss_pred C-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc-----------CCeEEEEeccHHHHHHHH
Confidence 5 69999999999988753 379999999999999999999988743 458999999999999999
Q ss_pred HHHHHhhccCCcEEEEEECCCcccHhh-------hccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCc
Q 000324 568 GNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRG 640 (1665)
Q Consensus 568 ~~~~~~~~~~gi~V~~ltGd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg 640 (1665)
+.+++++..+|++|..++|+.+...+. ...++|+|+||+.+. ....+.+++++||||+|.+...
T Consensus 328 ~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~-------~~v~~~~l~lvVIDE~Hrfg~~-- 398 (681)
T PRK10917 328 ENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQ-------DDVEFHNLGLVIIDEQHRFGVE-- 398 (681)
T ss_pred HHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhc-------ccchhcccceEEEechhhhhHH--
Confidence 999999999999999999998754321 125899999998642 1134678999999999986421
Q ss_pred hHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHHHH
Q 000324 641 PVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMN 720 (1665)
Q Consensus 641 ~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~ 720 (1665)
.... +......+++++||||.. ...++.............-.+..| .|+...+.. .... .
T Consensus 399 --qr~~-------l~~~~~~~~iL~~SATp~-prtl~~~~~g~~~~s~i~~~p~~r-~~i~~~~~~--~~~~----~--- 458 (681)
T PRK10917 399 --QRLA-------LREKGENPHVLVMTATPI-PRTLAMTAYGDLDVSVIDELPPGR-KPITTVVIP--DSRR----D--- 458 (681)
T ss_pred --HHHH-------HHhcCCCCCEEEEeCCCC-HHHHHHHHcCCCceEEEecCCCCC-CCcEEEEeC--cccH----H---
Confidence 1111 112345688999999953 344332222111111111111111 133333322 1111 1
Q ss_pred HHHHHHHHHH-hCCCeEEEEecChhHHHH--------HHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhh
Q 000324 721 DLCYEKVVAV-AGKHQVLIFVHSRKETAK--------TARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (1665)
Q Consensus 721 ~~~~~~i~~~-~~~~~vLVFv~sr~~~~~--------~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 791 (1665)
.+++.+... ..+++++|||+..++... +++.|. .
T Consensus 459 -~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~------------------------------------~ 501 (681)
T PRK10917 459 -EVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQ------------------------------------E 501 (681)
T ss_pred -HHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHH------------------------------------H
Confidence 112222222 347799999997654432 222222 1
Q ss_pred hc-CCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcc
Q 000324 792 LL-PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGR 870 (1665)
Q Consensus 792 ll-~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GR 870 (1665)
.+ ...++++||+|++.+|..+++.|++|.++|||||+++++|||+|++++||. |+++. .+...+.||+||
T Consensus 502 ~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi----~~~~r-----~gls~lhQ~~GR 572 (681)
T PRK10917 502 AFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVI----ENAER-----FGLAQLHQLRGR 572 (681)
T ss_pred HCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEE----eCCCC-----CCHHHHHHHhhc
Confidence 12 256999999999999999999999999999999999999999999999998 88775 367889999999
Q ss_pred cCCCCCCCceEEEEEeCC
Q 000324 871 AGRPQYDSYGEGIIITGH 888 (1665)
Q Consensus 871 AGR~g~d~~G~~iil~~~ 888 (1665)
+||.| ..|.|+++++.
T Consensus 573 vGR~g--~~g~~ill~~~ 588 (681)
T PRK10917 573 VGRGA--AQSYCVLLYKD 588 (681)
T ss_pred ccCCC--CceEEEEEECC
Confidence 99987 78999999964
No 64
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.5e-34 Score=316.82 Aligned_cols=281 Identities=22% Similarity=0.294 Sum_probs=225.2
Q ss_pred ccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHH
Q 000324 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (1665)
Q Consensus 1326 ~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~ 1404 (1665)
++.++++++.-. +|..|++||++++|.++.|+| ||..|.||||||.+|.+||++++.+.+.. ++++|++||||||.
T Consensus 67 gv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~d-vIglAeTGSGKT~afaLPIl~~LL~~p~~--~~~lVLtPtRELA~ 143 (476)
T KOG0330|consen 67 GVHPELLEACQELGWKKPTKIQSEAIPVALGGRD-VIGLAETGSGKTGAFALPILQRLLQEPKL--FFALVLTPTRELAQ 143 (476)
T ss_pred CcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCc-EEEEeccCCCchhhhHHHHHHHHHcCCCC--ceEEEecCcHHHHH
Confidence 455677777765 799999999999999999888 99999999999999999999999995433 59999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEeCCCccc---hhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCc
Q 000324 1405 ERYRDWEIKFGQGLGMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (1665)
Q Consensus 1405 Q~~~~~~~~~~~~~~i~v~~l~G~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g 1481 (1665)
|+...+. .++...|+++..+.||.... ..+.+++||+||||+++.+++...+ ...+..++++|+||||+++++.
T Consensus 144 QI~e~fe-~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tk-gf~le~lk~LVlDEADrlLd~d- 220 (476)
T KOG0330|consen 144 QIAEQFE-ALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTK-GFSLEQLKFLVLDEADRLLDMD- 220 (476)
T ss_pred HHHHHHH-HhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhcc-CccHHHhHHHhhchHHhhhhhh-
Confidence 9999999 89999999999999998765 4467889999999999999887533 3568899999999999999876
Q ss_pred hhHHHHHHHHHHHHhhcCCCCeEEEEcccCCChH-HHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcC
Q 000324 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANAK-DLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT 1560 (1665)
Q Consensus 1482 ~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~~-dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~ 1560 (1665)
|...+.+|...++...|.+++|||++..- .+. ... -.+|+.+.+.-.....++..+.+..+.
T Consensus 221 -----F~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~---ras---------l~~p~~v~~s~ky~tv~~lkQ~ylfv~ 283 (476)
T KOG0330|consen 221 -----FEEELDYILKVIPRERQTFLFSATMTKKVRKLQ---RAS---------LDNPVKVAVSSKYQTVDHLKQTYLFVP 283 (476)
T ss_pred -----hHHHHHHHHHhcCccceEEEEEeecchhhHHHH---hhc---------cCCCeEEeccchhcchHHhhhheEecc
Confidence 66777777788899999999999998742 222 111 113444433333333334433332222
Q ss_pred ---hhH-HHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccE
Q 000324 1561 ---KPT-FTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGV 1636 (1665)
Q Consensus 1561 ---k~~-~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI 1636 (1665)
|++ +-.|+.+ ..+.++||||+|...++.++..| ..+++..
T Consensus 284 ~k~K~~yLV~ll~e-~~g~s~iVF~~t~~tt~~la~~L-----------------------------------~~lg~~a 327 (476)
T KOG0330|consen 284 GKDKDTYLVYLLNE-LAGNSVIVFCNTCNTTRFLALLL-----------------------------------RNLGFQA 327 (476)
T ss_pred ccccchhHHHHHHh-hcCCcEEEEEeccchHHHHHHHH-----------------------------------HhcCcce
Confidence 222 3345555 56789999999999999999766 4577778
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1637 GYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1637 ~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
..+||.|++..|.-.++.|++|...||||
T Consensus 328 ~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~ 356 (476)
T KOG0330|consen 328 IPLHGQMSQSKRLGALNKFKAGARSILVC 356 (476)
T ss_pred ecccchhhHHHHHHHHHHHhccCCcEEEe
Confidence 89999999999999999999999999999
No 65
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-33 Score=351.07 Aligned_cols=363 Identities=21% Similarity=0.335 Sum_probs=277.2
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000324 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1665)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (1665)
||..++|||.+|+|+++.+.+ ||..|-||||||++|.||+++++...+... ..+++.+|+++|||+||.|+.+.+.
T Consensus 384 ~y~k~~~IQ~qAiP~ImsGrd-vIgvakTgSGKT~af~LPmirhi~dQr~~~---~gdGPi~li~aPtrela~QI~r~~~ 459 (997)
T KOG0334|consen 384 GYEKPTPIQAQAIPAIMSGRD-VIGVAKTGSGKTLAFLLPMIRHIKDQRPLE---EGDGPIALILAPTRELAMQIHREVR 459 (997)
T ss_pred cCCCCcchhhhhcchhccCcc-eEEeeccCCccchhhhcchhhhhhcCCChh---hCCCceEEEEcCCHHHHHHHHHHHH
Confidence 789999999999999998877 999999999999999999998887654322 1258899999999999999999999
Q ss_pred HhhccCCcEEEEEECCCcccHhh---hccccEEEeChhhH-HHHHhhcCCCccccceeEEEEeccccccc-CCchHHHHH
Q 000324 572 NRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESI 646 (1665)
Q Consensus 572 ~~~~~~gi~V~~ltGd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~i 646 (1665)
++++.+|+++...+|+...+.+. ...+.|+||||+++ |.+.-.......+.++.++|+||+|.|.+ .+-|..-.|
T Consensus 460 kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~I 539 (997)
T KOG0334|consen 460 KFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRI 539 (997)
T ss_pred HHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchH
Confidence 99999999999999999887763 24699999999995 88888877777788888999999999998 677877666
Q ss_pred HHHHHHHHhhccCCeeEEEEcccCCC-hHHHHHHHhccccCceEEecCCCc-cccceEEEEeeecCchhHHHHHHHHHHH
Q 000324 647 VARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYR-PVPLSQQYIGIQVKKPLQRFQLMNDLCY 724 (1665)
Q Consensus 647 v~r~~~~~~~~~~~~riV~lSATl~n-~~dv~~~l~~~~~~~~~~f~~~~r-pv~l~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1665)
+.++ ++..|.|.+|||+|. .+.++.-....|.. ..+...-. --.+.+.+..+.. ...++..+.++
T Consensus 540 i~nl-------rpdrQtvlfSatfpr~m~~la~~vl~~Pve--iiv~~~svV~k~V~q~v~V~~~--e~eKf~kL~eL-- 606 (997)
T KOG0334|consen 540 LQNL-------RPDRQTVLFSATFPRSMEALARKVLKKPVE--IIVGGRSVVCKEVTQVVRVCAI--ENEKFLKLLEL-- 606 (997)
T ss_pred Hhhc-------chhhhhhhhhhhhhHHHHHHHHHhhcCCee--EEEccceeEeccceEEEEEecC--chHHHHHHHHH--
Confidence 5544 678899999999986 34444444444322 22222111 1123333333331 11223322222
Q ss_pred HHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCC
Q 000324 725 EKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGM 804 (1665)
Q Consensus 725 ~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm 804 (1665)
+.......++||||.+...|..+.+.|...+..+.. +|||.
T Consensus 607 --l~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~s-------------------------------------lHGgv 647 (997)
T KOG0334|consen 607 --LGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDS-------------------------------------LHGGV 647 (997)
T ss_pred --HHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhh-------------------------------------hcCCC
Confidence 233334789999999999999999999876655433 39999
Q ss_pred CHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEE
Q 000324 805 TRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGII 884 (1665)
Q Consensus 805 ~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~ii 884 (1665)
++.+|..+++.|++|.+++||||+++++|+|++...+||+ ||.+. -..+|+||+||+||+| ..|.|+.
T Consensus 648 ~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvn----yd~pn------h~edyvhR~gRTgrag--rkg~Avt 715 (997)
T KOG0334|consen 648 DQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVN----YDFPN------HYEDYVHRVGRTGRAG--RKGAAVT 715 (997)
T ss_pred chHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEE----cccch------hHHHHHHHhcccccCC--ccceeEE
Confidence 9999999999999999999999999999999999999999 99988 4667999999999998 8999999
Q ss_pred EeCCCcHHHHHH----hhcCCCccccchhHhhHHHHHHHHHhc
Q 000324 885 ITGHSELRYYLS----LMNQQLPIESQFVSKLADQLNAEIVLG 923 (1665)
Q Consensus 885 l~~~~~~~~y~~----ll~~~~piES~l~~~l~d~lnaeI~~g 923 (1665)
|.++.+..+--. +.....|+. .++..+..-+.++...|
T Consensus 716 Fi~p~q~~~a~dl~~al~~~~~~~P-~~l~~l~~~f~~~~~~~ 757 (997)
T KOG0334|consen 716 FITPDQLKYAGDLCKALELSKQPVP-KLLQALSERFKAKQKAG 757 (997)
T ss_pred EeChHHhhhHHHHHHHHHhccCCCc-hHHHHHHHHHHhhhhcc
Confidence 999855443221 222222222 55555655555555544
No 66
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=8.6e-33 Score=357.76 Aligned_cols=312 Identities=24% Similarity=0.339 Sum_probs=220.5
Q ss_pred CCCCCCHHHHHHHHHHHcCC-----CcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000324 492 GMTQLNRVQSRVYKSALSSA-----DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (1665)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~-----~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~ 566 (1665)
+| +||++|.+|++.++.+- .|.+++||||||||.+|+++++..+.. +.+++|++||++||.|+
T Consensus 233 pf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~-----------g~qvlilaPT~~LA~Q~ 300 (630)
T TIGR00643 233 PF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA-----------GYQVALMAPTEILAEQH 300 (630)
T ss_pred CC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc-----------CCcEEEECCHHHHHHHH
Confidence 46 79999999999988652 368999999999999999999988753 45799999999999999
Q ss_pred HHHHHHhhccCCcEEEEEECCCcccHhh-------hccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCC
Q 000324 567 VGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNR 639 (1665)
Q Consensus 567 ~~~~~~~~~~~gi~V~~ltGd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~r 639 (1665)
++.+++.++.+|+++..++|+.....+. ..+++|+|+||+.+. . ...+.++++|||||+|.++...
T Consensus 301 ~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~---~----~~~~~~l~lvVIDEaH~fg~~q 373 (630)
T TIGR00643 301 YNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQ---E----KVEFKRLALVIIDEQHRFGVEQ 373 (630)
T ss_pred HHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHh---c----cccccccceEEEechhhccHHH
Confidence 9999999998999999999998765421 135799999998542 1 1346789999999999864321
Q ss_pred chHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHHH
Q 000324 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLM 719 (1665)
Q Consensus 640 g~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~ 719 (1665)
...+. .. ......+++++||||... ..++..+............+..| .|+...+.. ... +
T Consensus 374 ----r~~l~---~~-~~~~~~~~~l~~SATp~p-rtl~l~~~~~l~~~~i~~~p~~r-~~i~~~~~~--~~~---~---- 434 (630)
T TIGR00643 374 ----RKKLR---EK-GQGGFTPHVLVMSATPIP-RTLALTVYGDLDTSIIDELPPGR-KPITTVLIK--HDE---K---- 434 (630)
T ss_pred ----HHHHH---Hh-cccCCCCCEEEEeCCCCc-HHHHHHhcCCcceeeeccCCCCC-CceEEEEeC--cch---H----
Confidence 11111 10 001126789999999543 33332221111111111111111 233333321 111 1
Q ss_pred HHHHHHHHHHH-hCCCeEEEEecChhHHHHH--------HHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhh
Q 000324 720 NDLCYEKVVAV-AGKHQVLIFVHSRKETAKT--------ARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790 (1665)
Q Consensus 720 ~~~~~~~i~~~-~~~~~vLVFv~sr~~~~~~--------a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~ 790 (1665)
..++..+.+. ..+++++|||+..++...+ ++.|.+.
T Consensus 435 -~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~---------------------------------- 479 (630)
T TIGR00643 435 -DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKA---------------------------------- 479 (630)
T ss_pred -HHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhh----------------------------------
Confidence 2233334333 3478999999987554332 2222111
Q ss_pred hhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcc
Q 000324 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGR 870 (1665)
Q Consensus 791 ~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GR 870 (1665)
+-...|+++||+|++.+|..+++.|++|+++|||||+++++|||+|++++||. |+++. ++..+|.||+||
T Consensus 480 -~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi----~~~~r-----~gls~lhQ~~GR 549 (630)
T TIGR00643 480 -FPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVI----EDAER-----FGLSQLHQLRGR 549 (630)
T ss_pred -CCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEE----eCCCc-----CCHHHHHHHhhh
Confidence 12356999999999999999999999999999999999999999999999998 88764 367899999999
Q ss_pred cCCCCCCCceEEEEEeCC
Q 000324 871 AGRPQYDSYGEGIIITGH 888 (1665)
Q Consensus 871 AGR~g~d~~G~~iil~~~ 888 (1665)
|||.| ..|.|++++..
T Consensus 550 vGR~g--~~g~~il~~~~ 565 (630)
T TIGR00643 550 VGRGD--HQSYCLLVYKN 565 (630)
T ss_pred cccCC--CCcEEEEEECC
Confidence 99987 78999999843
No 67
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-32 Score=328.99 Aligned_cols=441 Identities=16% Similarity=0.184 Sum_probs=315.7
Q ss_pred HHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc-cCCcEEEEE
Q 000324 506 SALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVREL 584 (1665)
Q Consensus 506 ~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~-~~gi~V~~l 584 (1665)
.+++.++.+||.|+||||||+.....+...-.. ...+|.+..|+|-.|..+++++....+ .+|-.|+..
T Consensus 61 ~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~----------~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~ 130 (674)
T KOG0922|consen 61 YAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFA----------SSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYT 130 (674)
T ss_pred HHHHHCCEEEEEcCCCCCccccHhHHHHhcccc----------cCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeE
Confidence 456788999999999999999776665554322 133599999999999999999987554 344445443
Q ss_pred ECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEE
Q 000324 585 SGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLV 664 (1665)
Q Consensus 585 tGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV 664 (1665)
.. +++.....+.|.+.|.+ +|+|.....+.++++++||+|||| +|.-..+.++.-+.+. -+..+..|+|
T Consensus 131 IR---Fed~ts~~TrikymTDG---~LLRE~l~Dp~LskYsvIIlDEAH----ERsl~TDiLlGlLKki-~~~R~~LklI 199 (674)
T KOG0922|consen 131 IR---FEDSTSKDTRIKYMTDG---MLLREILKDPLLSKYSVIILDEAH----ERSLHTDILLGLLKKI-LKKRPDLKLI 199 (674)
T ss_pred EE---ecccCCCceeEEEecch---HHHHHHhcCCccccccEEEEechh----hhhhHHHHHHHHHHHH-HhcCCCceEE
Confidence 32 23333347999999999 788888777899999999999999 5555556566544443 3456789999
Q ss_pred EEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEecChh
Q 000324 665 GLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRK 744 (1665)
Q Consensus 665 ~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~ 744 (1665)
.+|||+ |.+.+..|++..+ ++... .|..|++..|..-+.. ....+....+.+ ++...+.+.+|||.+.++
T Consensus 200 imSATl-da~kfS~yF~~a~---i~~i~--GR~fPVei~y~~~p~~---dYv~a~~~tv~~-Ih~~E~~GDILvFLtGqe 269 (674)
T KOG0922|consen 200 IMSATL-DAEKFSEYFNNAP---ILTIP--GRTFPVEILYLKEPTA---DYVDAALITVIQ-IHLTEPPGDILVFLTGQE 269 (674)
T ss_pred EEeeee-cHHHHHHHhcCCc---eEeec--CCCCceeEEeccCCch---hhHHHHHHHHHH-HHccCCCCCEEEEeCCHH
Confidence 999999 7899999998754 44444 4555666655542222 222222222333 333455789999999999
Q ss_pred HHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeE
Q 000324 745 ETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVL 824 (1665)
Q Consensus 745 ~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VL 824 (1665)
+.+.+++.|.+........ .+.-+...||.|+.+++..|++.-..|..+|+
T Consensus 270 EIe~~~~~l~e~~~~~~~~-----------------------------~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvI 320 (674)
T KOG0922|consen 270 EIEAACELLRERAKSLPED-----------------------------CPELILPLYGALPSEEQSRVFDPAPPGKRKVI 320 (674)
T ss_pred HHHHHHHHHHHHhhhcccc-----------------------------CcceeeeecccCCHHHhhccccCCCCCcceEE
Confidence 9999999998875332211 01124567999999999999999999999999
Q ss_pred EeccccccccCCCceEEEEec----ccccCCCCCC----cccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcHHHHHH
Q 000324 825 VSTATLAWGVNLPAHTVIIKG----TQIYNPEKGA----WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLS 896 (1665)
Q Consensus 825 VaT~tla~GVdlP~v~vVI~~----t~~yd~~~g~----~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ 896 (1665)
+||++++..|.+|++.+||+. ...|+|..|. .+++|.++..||.|||||.| .|.||.+++.++ |.+
T Consensus 321 lsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~---pGkcyRLYte~~---~~~ 394 (674)
T KOG0922|consen 321 LSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG---PGKCYRLYTESA---YDK 394 (674)
T ss_pred EEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC---CceEEEeeeHHH---Hhh
Confidence 999999999999999999995 5679998873 47899999999999999986 899999999766 355
Q ss_pred hhcCCCccccchhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHHHHHHHH
Q 000324 897 LMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAA 976 (1665)
Q Consensus 897 ll~~~~piES~l~~~l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~ 976 (1665)
+..++.|-.. ...|...+..-.++| ..||.-+... +.+..+.+.+|+
T Consensus 395 ~~~~~~PEI~--R~~Ls~~vL~Lkalg---------------------i~d~l~F~f~----------d~P~~~~l~~AL 441 (674)
T KOG0922|consen 395 MPLQTVPEIQ--RVNLSSAVLQLKALG---------------------INDPLRFPFI----------DPPPPEALEEAL 441 (674)
T ss_pred cccCCCCcee--eechHHHHHHHHhcC---------------------CCCcccCCCC----------CCCChHHHHHHH
Confidence 6555555111 112222222211222 1223222211 112235678999
Q ss_pred HHHhHcCCcccccCCCccccCh-HHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHhcCCccCCCCcCChhHHHHH
Q 000324 977 TILDRNNLVKYDRKSGYFQVTD-LGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMEL 1052 (1665)
Q Consensus 977 ~~L~~~~~i~~~~~~~~~~~T~-lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~~s~s~Ef~~i~~R~~E~~~l 1052 (1665)
..|...|.|+.+ | .+|+ +|+.||.++++|...++...+-...|+ .+++.+.|+-+ -.++..|..++..-
T Consensus 442 ~~L~~lgald~~---g--~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~-~e~l~i~a~Ls-v~~~f~~p~~~~~~ 511 (674)
T KOG0922|consen 442 EELYSLGALDDR---G--KLTSPLGRQMAELPLEPHLSKMLLKSSELGCS-EEILTIAAMLS-VQSVFSRPKDKKAE 511 (674)
T ss_pred HHHHhcCcccCc---C--CcCchHHhhhhhcCCCcchhhhhhhccccCCc-chhhhheeeee-ccceecCccchhhh
Confidence 999999999843 4 4555 999999999999999999988777776 67787777765 56777777665544
No 68
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.3e-32 Score=336.48 Aligned_cols=327 Identities=21% Similarity=0.315 Sum_probs=250.4
Q ss_pred hHhhcCCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHH
Q 000324 486 AQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565 (1665)
Q Consensus 486 ~~~~f~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q 565 (1665)
++..| |+..|++-|.++|..++.+ +++|+..|||+||++||.+|.+-. .+-+|+|.|..+|...
T Consensus 9 L~~~f-Gy~~FR~gQ~evI~~~l~g-~d~lvvmPTGgGKSlCyQiPAll~--------------~G~TLVVSPLiSLM~D 72 (590)
T COG0514 9 LKQVF-GYASFRPGQQEIIDALLSG-KDTLVVMPTGGGKSLCYQIPALLL--------------EGLTLVVSPLISLMKD 72 (590)
T ss_pred HHHHh-CccccCCCHHHHHHHHHcC-CcEEEEccCCCCcchHhhhHHHhc--------------CCCEEEECchHHHHHH
Confidence 44445 7999999999999999988 559999999999999999998754 1258999999999999
Q ss_pred HHHHHHHhhccCCcEEEEEECCCcccHhh-------hccccEEEeChhhH--HHHHhhcCCCccccceeEEEEecccccc
Q 000324 566 VVGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKW--DIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (1665)
Q Consensus 566 ~~~~~~~~~~~~gi~V~~ltGd~~~~~~~-------~~~~~IiV~TPekl--d~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (1665)
+++.+... |+.+..+.+..+..... ....++++-+||++ ..+.+... -..+.+++||||||+.
T Consensus 73 QV~~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~----~~~i~l~vIDEAHCiS 144 (590)
T COG0514 73 QVDQLEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLK----RLPISLVAIDEAHCIS 144 (590)
T ss_pred HHHHHHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHH----hCCCceEEechHHHHh
Confidence 99998764 78888887775544321 13579999999996 22222211 3458899999999997
Q ss_pred c---CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCC--hHHHHHHHhccccCceEEecCCCccccceEEEEeeecCc
Q 000324 637 D---NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKK 711 (1665)
Q Consensus 637 d---~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n--~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~ 711 (1665)
. +|.|.|..+-.-. ... +++.+++||||.++ ..|+..-|+... ...+..+-.||. +...+ ....+
T Consensus 145 qWGhdFRP~Y~~lg~l~----~~~-~~~p~~AlTATA~~~v~~DI~~~L~l~~--~~~~~~sfdRpN-i~~~v--~~~~~ 214 (590)
T COG0514 145 QWGHDFRPDYRRLGRLR----AGL-PNPPVLALTATATPRVRDDIREQLGLQD--ANIFRGSFDRPN-LALKV--VEKGE 214 (590)
T ss_pred hcCCccCHhHHHHHHHH----hhC-CCCCEEEEeCCCChHHHHHHHHHhcCCC--cceEEecCCCch-hhhhh--hhccc
Confidence 6 4778877554422 233 38899999999875 467888887653 223334444552 11111 11111
Q ss_pred hhHHHHHHHHHHHHHHHH--HhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchh
Q 000324 712 PLQRFQLMNDLCYEKVVA--VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (1665)
Q Consensus 712 ~~~~~~~~~~~~~~~i~~--~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l 789 (1665)
...+ .. .+.+ ....++.||||.||+.++.+|.+|...+
T Consensus 215 ~~~q------~~--fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g-------------------------------- 254 (590)
T COG0514 215 PSDQ------LA--FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNG-------------------------------- 254 (590)
T ss_pred HHHH------HH--HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCC--------------------------------
Confidence 1111 11 1221 3336679999999999999999998864
Q ss_pred hhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhc
Q 000324 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLG 869 (1665)
Q Consensus 790 ~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~G 869 (1665)
..++++||||+..+|..+++.|..+.++|+|||.++++|||-|++++||| ||.|. |+.+|.|-+|
T Consensus 255 -----~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH----~~lP~------s~EsYyQE~G 319 (590)
T COG0514 255 -----ISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIH----YDLPG------SIESYYQETG 319 (590)
T ss_pred -----CceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEE----ecCCC------CHHHHHHHHh
Confidence 23688899999999999999999999999999999999999999999999 99987 9999999999
Q ss_pred ccCCCCCCCceEEEEEeCCCcHHHHHHhhcCCCc
Q 000324 870 RAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLP 903 (1665)
Q Consensus 870 RAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~p 903 (1665)
||||.| ...+|++++++.+......++....|
T Consensus 320 RAGRDG--~~a~aill~~~~D~~~~~~~i~~~~~ 351 (590)
T COG0514 320 RAGRDG--LPAEAILLYSPEDIRWQRYLIEQSKP 351 (590)
T ss_pred hccCCC--CcceEEEeeccccHHHHHHHHHhhcc
Confidence 999999 88999999999998877777777666
No 69
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.8e-33 Score=328.91 Aligned_cols=329 Identities=18% Similarity=0.281 Sum_probs=254.6
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
.+|..+++||..|||.++.+-+ +||.|..|+|||++|...+++.+... .....+++++|||++|.|+...+
T Consensus 43 n~f~~ptkiQaaAIP~~~~kmD-liVQaKSGTGKTlVfsv~av~sl~~~--------~~~~q~~Iv~PTREiaVQI~~tv 113 (980)
T KOG4284|consen 43 NAFALPTKIQAAAIPAIFSKMD-LIVQAKSGTGKTLVFSVLAVESLDSR--------SSHIQKVIVTPTREIAVQIKETV 113 (980)
T ss_pred hcccCCCchhhhhhhhhhcccc-eEEEecCCCCceEEEEeeeehhcCcc--------cCcceeEEEecchhhhhHHHHHH
Confidence 4789999999999999988766 99999999999999998888876442 23568999999999999999999
Q ss_pred HHhhcc-CCcEEEEEECCCcccHh--hhccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc--CCchHHHH
Q 000324 571 SNRLQM-YDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD--NRGPVLES 645 (1665)
Q Consensus 571 ~~~~~~-~gi~V~~ltGd~~~~~~--~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d--~rg~~le~ 645 (1665)
.+.... .|.+|..+.||+..... .+++++|+|+||+++..|..... ...++++|+|+||||.|.+ .+...+..
T Consensus 114 ~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~--~n~s~vrlfVLDEADkL~~t~sfq~~In~ 191 (980)
T KOG4284|consen 114 RKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGA--MNMSHVRLFVLDEADKLMDTESFQDDINI 191 (980)
T ss_pred HHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcC--CCccceeEEEeccHHhhhchhhHHHHHHH
Confidence 987763 48999999999876543 56799999999999876665543 4678999999999999987 35555554
Q ss_pred HHHHHHHHHhhccCCeeEEEEcccCCC--hHHHHHHHhccccCceEEecCCC-ccccceEEEEeeecC-chhHHHHHHHH
Q 000324 646 IVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFDNSY-RPVPLSQQYIGIQVK-KPLQRFQLMND 721 (1665)
Q Consensus 646 iv~r~~~~~~~~~~~~riV~lSATl~n--~~dv~~~l~~~~~~~~~~f~~~~-rpv~l~~~~~~~~~~-~~~~~~~~~~~ 721 (1665)
|+. .++...|++++|||-|. ...+++|++.. .++.|..+. .-.-+.|+++..... ...+.+..+..
T Consensus 192 ii~-------slP~~rQv~a~SATYp~nLdn~Lsk~mrdp---~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq 261 (980)
T KOG4284|consen 192 IIN-------SLPQIRQVAAFSATYPRNLDNLLSKFMRDP---ALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQ 261 (980)
T ss_pred HHH-------hcchhheeeEEeccCchhHHHHHHHHhccc---ceeecccCCceeechhheeeeccCCcchHHHHHHHHH
Confidence 444 45778999999999984 23455666532 133333221 122445555544333 22333333333
Q ss_pred HHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEec
Q 000324 722 LCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHH 801 (1665)
Q Consensus 722 ~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~H 801 (1665)
.+ ..+....+-.|.||||+....|+.+|..|...++. +-+..
T Consensus 262 ~L-~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d-------------------------------------~~~IS 303 (980)
T KOG4284|consen 262 KL-THVFKSIPYVQALVFCDQISRAEPIATHLKSSGLD-------------------------------------VTFIS 303 (980)
T ss_pred HH-HHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCC-------------------------------------eEEec
Confidence 22 23444455679999999999999999999876644 45568
Q ss_pred CCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceE
Q 000324 802 AGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 881 (1665)
Q Consensus 802 agm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~ 881 (1665)
|.|++.+|..+++.++.-+++|||+|+..+||||-|.+.+||+ .|++. +-.+|+||+|||||-| ..|.
T Consensus 304 gaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVN----iD~p~------d~eTY~HRIGRAgRFG--~~G~ 371 (980)
T KOG4284|consen 304 GAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVN----IDAPA------DEETYFHRIGRAGRFG--AHGA 371 (980)
T ss_pred cccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEe----cCCCc------chHHHHHHhhhccccc--ccce
Confidence 9999999999999999999999999999999999999999999 67664 6678999999999976 8999
Q ss_pred EEEEeCCCc
Q 000324 882 GIIITGHSE 890 (1665)
Q Consensus 882 ~iil~~~~~ 890 (1665)
+|.++...+
T Consensus 372 aVT~~~~~~ 380 (980)
T KOG4284|consen 372 AVTLLEDER 380 (980)
T ss_pred eEEEeccch
Confidence 999887744
No 70
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.6e-33 Score=326.81 Aligned_cols=339 Identities=21% Similarity=0.276 Sum_probs=247.0
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
.+|..++|+|.+++|.++.. .+++.|||||||||++|.+||+..+....... ...+.+++|+.|||+||.|++.++
T Consensus 154 ~~F~~Pt~iq~~aipvfl~~-r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~---~~~gl~a~Il~ptreLa~Qi~re~ 229 (593)
T KOG0344|consen 154 LGFDEPTPIQKQAIPVFLEK-RDVLACAPTGSGKTLAFNLPILQHLKDLSQEK---HKVGLRALILSPTRELAAQIYREM 229 (593)
T ss_pred CCCCCCCcccchhhhhhhcc-cceEEeccCCCcchhhhhhHHHHHHHHhhccc---CccceEEEEecchHHHHHHHHHHH
Confidence 68999999999999988776 45999999999999999999999998764211 235789999999999999999999
Q ss_pred HHhh--ccCCcEEEEEECCCcccHh----hhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHH
Q 000324 571 SNRL--QMYDVKVRELSGDQTLTRQ----QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLE 644 (1665)
Q Consensus 571 ~~~~--~~~gi~V~~ltGd~~~~~~----~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le 644 (1665)
.++. ...+.++..+......... ....++|+|+||-++-.+.....-...+..|.++|+||++++.+. ..+-
T Consensus 230 ~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~--~~f~ 307 (593)
T KOG0344|consen 230 RKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEP--EFFV 307 (593)
T ss_pred HhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhCh--hhHH
Confidence 9877 4555666666554332221 234689999999986444444332346788999999999999764 1233
Q ss_pred HHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCcc---ccceEEEEeeecCchhHHHHHHHH
Q 000324 645 SIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRP---VPLSQQYIGIQVKKPLQRFQLMND 721 (1665)
Q Consensus 645 ~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rp---v~l~~~~~~~~~~~~~~~~~~~~~ 721 (1665)
.-++.+...+ ..+.+++-+||||++ ..+.+|......... ...-..++ ..+.|..+.+... . .++.++.+
T Consensus 308 ~Qla~I~sac--~s~~i~~a~FSat~~--~~VEE~~~~i~~~~~-~vivg~~~sa~~~V~QelvF~gse-~-~K~lA~rq 380 (593)
T KOG0344|consen 308 EQLADIYSAC--QSPDIRVALFSATIS--VYVEEWAELIKSDLK-RVIVGLRNSANETVDQELVFCGSE-K-GKLLALRQ 380 (593)
T ss_pred HHHHHHHHHh--cCcchhhhhhhcccc--HHHHHHHHHhhccce-eEEEecchhHhhhhhhhheeeecc-h-hHHHHHHH
Confidence 3333333322 247888899999987 578888876532211 11111121 1222222222211 1 11222111
Q ss_pred HHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEec
Q 000324 722 LCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHH 801 (1665)
Q Consensus 722 ~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~H 801 (1665)
.+ ...-..|+||||.+.+.|..+...|... + .-.|++.|
T Consensus 381 ----~v-~~g~~PP~lIfVQs~eRak~L~~~L~~~----~--------------------------------~i~v~vIh 419 (593)
T KOG0344|consen 381 ----LV-ASGFKPPVLIFVQSKERAKQLFEELEIY----D--------------------------------NINVDVIH 419 (593)
T ss_pred ----HH-hccCCCCeEEEEecHHHHHHHHHHhhhc----c--------------------------------CcceeeEe
Confidence 11 1112679999999999999888877411 0 12478889
Q ss_pred CCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceE
Q 000324 802 AGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 881 (1665)
Q Consensus 802 agm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~ 881 (1665)
|..++.+|..+++.|+.|++.||+||++++||+|+.++..||+ ||.+. |..+|+||+||+||+| +.|.
T Consensus 420 ~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VIn----yD~p~------s~~syihrIGRtgRag--~~g~ 487 (593)
T KOG0344|consen 420 GERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVIN----YDFPQ------SDLSYIHRIGRTGRAG--RSGK 487 (593)
T ss_pred cccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEe----cCCCc------hhHHHHHHhhccCCCC--CCcc
Confidence 9999999999999999999999999999999999999999999 99887 8999999999999998 8999
Q ss_pred EEEEeCCCcHHHHH
Q 000324 882 GIIITGHSELRYYL 895 (1665)
Q Consensus 882 ~iil~~~~~~~~y~ 895 (1665)
||.+++..+..+..
T Consensus 488 Aitfytd~d~~~ir 501 (593)
T KOG0344|consen 488 AITFYTDQDMPRIR 501 (593)
T ss_pred eEEEeccccchhhh
Confidence 99999997766654
No 71
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=2.5e-32 Score=345.21 Aligned_cols=297 Identities=22% Similarity=0.301 Sum_probs=240.3
Q ss_pred cccchhHHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhc---CCCCeEEEEEcccHH
Q 000324 1325 TALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS---ETGVMRAVYIAPLEA 1401 (1665)
Q Consensus 1325 ~~L~~~~~~~l~~~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~---~~~~~r~l~I~Ptre 1401 (1665)
..|++...+.+...|..|||.|.+||+.++.| .|+||+||||||||++|.||++..+.... +..+..+|||+|.||
T Consensus 6 ~~l~~~v~~~~~~~~~~~t~~Q~~a~~~i~~G-~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkA 84 (814)
T COG1201 6 NILDPRVREWFKRKFTSLTPPQRYAIPEIHSG-ENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKA 84 (814)
T ss_pred hhcCHHHHHHHHHhcCCCCHHHHHHHHHHhCC-CceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHH
Confidence 44556666666668999999999999999974 55999999999999999999999998852 334579999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEEeCCCccchh---ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccC-
Q 000324 1402 LAKERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG- 1477 (1665)
Q Consensus 1402 La~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~- 1477 (1665)
|.+++..++. ..+..+|+.|...+|+++...+ ..+.+||+|+|||.+..++..-+.+..+.+|+++||||+|.+.
T Consensus 85 Ln~Di~~rL~-~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~ 163 (814)
T COG1201 85 LNNDIRRRLE-EPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAE 163 (814)
T ss_pred HHHHHHHHHH-HHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhc
Confidence 9999999999 6677889999999999987633 3345699999999998888765677889999999999999776
Q ss_pred CCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCChHHHHHHhcccC-CcEEecCCCCCccceEEEEeecccchhhHHH
Q 000324 1478 GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATS-HGLFNFPPGVRPVPLEIHIQGVDITNFEARM 1556 (1665)
Q Consensus 1478 ~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~~dl~~wl~~~~-~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~ 1556 (1665)
+.+|..+...+.|++.+.. +.|.||||||..+..++++|++... .....-.+..++..+.+..........
T Consensus 164 sKRG~~Lsl~LeRL~~l~~----~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~---- 235 (814)
T COG1201 164 SKRGVQLALSLERLRELAG----DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYD---- 235 (814)
T ss_pred cccchhhhhhHHHHHhhCc----ccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccc----
Confidence 4789999999999998753 8999999999999999999998875 333333344455555554433332222
Q ss_pred HhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccE
Q 000324 1557 QAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGV 1636 (1665)
Q Consensus 1557 ~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI 1636 (1665)
.......+..+.......+.+|||+|||.+|+.++..|. ......|
T Consensus 236 ~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~----------------------------------~~~~~~i 281 (814)
T COG1201 236 EELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLK----------------------------------KLGPDII 281 (814)
T ss_pred cchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHH----------------------------------HhcCCce
Confidence 222344555566666667899999999999999998873 2233679
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1637 GYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1637 ~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
..|||.++.+.|..+++.|++|.++++||
T Consensus 282 ~~HHgSlSre~R~~vE~~lk~G~lravV~ 310 (814)
T COG1201 282 EVHHGSLSRELRLEVEERLKEGELKAVVA 310 (814)
T ss_pred eeecccccHHHHHHHHHHHhcCCceEEEE
Confidence 99999999999999999999999999999
No 72
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.1e-31 Score=341.01 Aligned_cols=327 Identities=18% Similarity=0.180 Sum_probs=220.3
Q ss_pred HHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHH---------HHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHH
Q 000324 498 RVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTI---------LQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (1665)
Q Consensus 498 ~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~i---------l~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~ 568 (1665)
.+|.++++.+.++ +++|++|+||||||.+....+ +..+..-. . .....++++++|||+||.|+..
T Consensus 167 ~iQ~qil~~i~~g-kdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~-~----~~~~~~ilvt~PrreLa~qi~~ 240 (675)
T PHA02653 167 DVQLKIFEAWISR-KPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID-P----NFIERPIVLSLPRVALVRLHSI 240 (675)
T ss_pred HHHHHHHHHHHhC-CCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc-c----ccCCcEEEEECcHHHHHHHHHH
Confidence 4899999998766 459999999999999844333 33222110 0 1124589999999999999999
Q ss_pred HHHHhhcc---CCcEEEEEECCCccc--HhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHH
Q 000324 569 NLSNRLQM---YDVKVRELSGDQTLT--RQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVL 643 (1665)
Q Consensus 569 ~~~~~~~~---~gi~V~~ltGd~~~~--~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~l 643 (1665)
++.+.++. .|..|....|+.... .......+|+|+|+.. ....++.+++|||||||.+... +..+
T Consensus 241 ~i~~~vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L---------~l~~L~~v~~VVIDEaHEr~~~-~Dll 310 (675)
T PHA02653 241 TLLKSLGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKL---------TLNKLFDYGTVIIDEVHEHDQI-GDII 310 (675)
T ss_pred HHHHHhCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcc---------cccccccCCEEEccccccCccc-hhHH
Confidence 99876653 367788899988632 1122357899999762 1135778999999999987643 3333
Q ss_pred HHHHHHHHHHHhhccCCeeEEEEcccCCC-hHHHHHHHhccccCceEEecCCCccccceEEEEeeecCch--hHHHHHHH
Q 000324 644 ESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKP--LQRFQLMN 720 (1665)
Q Consensus 644 e~iv~r~~~~~~~~~~~~riV~lSATl~n-~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~--~~~~~~~~ 720 (1665)
..++... .+...|+++||||++. .+.+..|++.. ..+.... ....|+++.++....... ......-.
T Consensus 311 L~llk~~------~~~~rq~ILmSATl~~dv~~l~~~~~~p---~~I~I~g-rt~~pV~~~yi~~~~~~~~~~~y~~~~k 380 (675)
T PHA02653 311 IAVARKH------IDKIRSLFLMTATLEDDRDRIKEFFPNP---AFVHIPG-GTLFPISEVYVKNKYNPKNKRAYIEEEK 380 (675)
T ss_pred HHHHHHh------hhhcCEEEEEccCCcHhHHHHHHHhcCC---cEEEeCC-CcCCCeEEEEeecCcccccchhhhHHHH
Confidence 3333322 1223489999999983 55677777532 2233322 112566666654321100 00000001
Q ss_pred HHHHHHHHHH--hCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEE
Q 000324 721 DLCYEKVVAV--AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFA 798 (1665)
Q Consensus 721 ~~~~~~i~~~--~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~ 798 (1665)
..+...+... ..++++||||+++.++..+++.|..... ...+.
T Consensus 381 ~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~-----------------------------------~~~v~ 425 (675)
T PHA02653 381 KNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLP-----------------------------------IYDFY 425 (675)
T ss_pred HHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcC-----------------------------------CceEE
Confidence 1112222222 1256899999999999999998876420 12367
Q ss_pred EecCCCCHHHHHHHHHHH-hCCCCCeEEeccccccccCCCceEEEEecccccCCC--CCCcccCCHHHHHhhhcccCCCC
Q 000324 799 IHHAGMTRGDRQLVEDLF-GDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPE--KGAWTELSPLDIMQMLGRAGRPQ 875 (1665)
Q Consensus 799 ~~Hagm~~~dR~~v~~~F-~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~--~g~~~~~s~~~~~Qr~GRAGR~g 875 (1665)
.+||+|++. +.+++.| ++|..+|||||+++++|||+|++++||+....+.|. .|...++|.++|.||+|||||.
T Consensus 426 ~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~- 502 (675)
T PHA02653 426 IIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV- 502 (675)
T ss_pred eccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-
Confidence 789999975 4555666 789999999999999999999999999965444432 3445678999999999999997
Q ss_pred CCCceEEEEEeCCCc
Q 000324 876 YDSYGEGIIITGHSE 890 (1665)
Q Consensus 876 ~d~~G~~iil~~~~~ 890 (1665)
..|.|+.+++..+
T Consensus 503 --~~G~c~rLyt~~~ 515 (675)
T PHA02653 503 --SPGTYVYFYDLDL 515 (675)
T ss_pred --CCCeEEEEECHHH
Confidence 4799999998765
No 73
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1.3e-31 Score=358.71 Aligned_cols=310 Identities=19% Similarity=0.263 Sum_probs=224.4
Q ss_pred CCCCCCHHHHHHHHHHHcC-----CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000324 492 GMTQLNRVQSRVYKSALSS-----ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (1665)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~-----~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~ 566 (1665)
+| .+|++|.+|++.++.+ ..++|+|||||+|||.+|+.+++..+.. +.+++|++||++||.|+
T Consensus 598 ~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~-----------g~qvlvLvPT~eLA~Q~ 665 (1147)
T PRK10689 598 PF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN-----------HKQVAVLVPTTLLAQQH 665 (1147)
T ss_pred CC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc-----------CCeEEEEeCcHHHHHHH
Confidence 35 7999999999998875 2569999999999999999988876542 45899999999999999
Q ss_pred HHHHHHhhccCCcEEEEEECCCcccHhh--h-----ccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCC
Q 000324 567 VGNLSNRLQMYDVKVRELSGDQTLTRQQ--I-----EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNR 639 (1665)
Q Consensus 567 ~~~~~~~~~~~gi~V~~ltGd~~~~~~~--~-----~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~r 639 (1665)
++.|.+++..+++++..++|..+...+. + ..++|+|+||+. + ++. ..++++++|||||+|+++.
T Consensus 666 ~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~l---L-~~~---v~~~~L~lLVIDEahrfG~-- 736 (1147)
T PRK10689 666 YDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKL---L-QSD---VKWKDLGLLIVDEEHRFGV-- 736 (1147)
T ss_pred HHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHH---H-hCC---CCHhhCCEEEEechhhcch--
Confidence 9999999988889999999987654432 1 368999999973 2 221 2457899999999998732
Q ss_pred chHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHHH
Q 000324 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLM 719 (1665)
Q Consensus 640 g~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~ 719 (1665)
..... +...+.++++++||||+.+ ..+...+........+...+. ...++...+..+. .. . +
T Consensus 737 --~~~e~-------lk~l~~~~qvLl~SATpip-rtl~l~~~gl~d~~~I~~~p~-~r~~v~~~~~~~~--~~-~----~ 798 (1147)
T PRK10689 737 --RHKER-------IKAMRADVDILTLTATPIP-RTLNMAMSGMRDLSIIATPPA-RRLAVKTFVREYD--SL-V----V 798 (1147)
T ss_pred --hHHHH-------HHhcCCCCcEEEEcCCCCH-HHHHHHHhhCCCcEEEecCCC-CCCCceEEEEecC--cH-H----H
Confidence 11111 2234678999999999643 222211111111112222222 2223433322211 10 0 0
Q ss_pred HHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEE
Q 000324 720 NDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAI 799 (1665)
Q Consensus 720 ~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~ 799 (1665)
...+ ..+...+++++||||+++.+..++..|..... ..+|+.
T Consensus 799 k~~i---l~el~r~gqv~vf~n~i~~ie~la~~L~~~~p-----------------------------------~~~v~~ 840 (1147)
T PRK10689 799 REAI---LREILRGGQVYYLYNDVENIQKAAERLAELVP-----------------------------------EARIAI 840 (1147)
T ss_pred HHHH---HHHHhcCCeEEEEECCHHHHHHHHHHHHHhCC-----------------------------------CCcEEE
Confidence 1111 12223478999999999999999988876421 135888
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCc
Q 000324 800 HHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSY 879 (1665)
Q Consensus 800 ~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~ 879 (1665)
+||+|++.+|..++..|++|+++|||||+++++|||+|++++||. +++.. ++..+|+||+||+||.| ..
T Consensus 841 lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi----~~ad~-----fglaq~~Qr~GRvGR~g--~~ 909 (1147)
T PRK10689 841 GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII----ERADH-----FGLAQLHQLRGRVGRSH--HQ 909 (1147)
T ss_pred EeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEE----ecCCC-----CCHHHHHHHhhccCCCC--Cc
Confidence 999999999999999999999999999999999999999999985 33332 36678999999999987 78
Q ss_pred eEEEEEeCCC
Q 000324 880 GEGIIITGHS 889 (1665)
Q Consensus 880 G~~iil~~~~ 889 (1665)
|.|++++...
T Consensus 910 g~a~ll~~~~ 919 (1147)
T PRK10689 910 AYAWLLTPHP 919 (1147)
T ss_pred eEEEEEeCCC
Confidence 9999998754
No 74
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-32 Score=329.03 Aligned_cols=280 Identities=20% Similarity=0.281 Sum_probs=216.8
Q ss_pred cchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhh----cCCCCeEEEEEcccHH
Q 000324 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA----SETGVMRAVYIAPLEA 1401 (1665)
Q Consensus 1327 L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~----~~~~~~r~l~I~Ptre 1401 (1665)
|..+....+.. ||..|+|||.+++|.++.|+| ++..|.||||||++|++|++.++... ....+|++||++||||
T Consensus 98 ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD-~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRE 176 (519)
T KOG0331|consen 98 LSEELMKALKEQGFEKPTPIQAQGWPIALSGRD-LVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRE 176 (519)
T ss_pred ccHHHHHHHHhcCCCCCchhhhcccceeccCCc-eEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHH
Confidence 34455666665 899999999999999999888 99999999999999999999999862 1333579999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEEeCCCccchh---ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCC
Q 000324 1402 LAKERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (1665)
Q Consensus 1402 La~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~ 1478 (1665)
||.|+..++. .|+..++++..+++|+.+...+ +.++.+|+||||+++.+++.. +...++++.++|+||||+|++
T Consensus 177 LA~QV~~~~~-~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~--g~~~l~~v~ylVLDEADrMld 253 (519)
T KOG0331|consen 177 LAVQVQAEAR-EFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEE--GSLNLSRVTYLVLDEADRMLD 253 (519)
T ss_pred HHHHHHHHHH-HHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHc--CCccccceeEEEeccHHhhhc
Confidence 9999999999 8888888999999999887633 445679999999999999987 677899999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhhcC-CCCeEEEEcccCCC-hHHHHHHhcccCCcEEecCCCCCccceEEEEeec----ccchh
Q 000324 1479 QGGPVLEVIVSRMRYIASQVE-NKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGV----DITNF 1552 (1665)
Q Consensus 1479 ~~g~~~e~~~srl~~i~~~~~-~~~riI~lSATl~n-~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~----~~~~~ 1552 (1665)
++ |-..++.|..+++ +..|++++|||.|. .+.++.-+-... +.+.+-.. ...++
T Consensus 254 mG------Fe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~--------------~~i~ig~~~~~~a~~~i 313 (519)
T KOG0331|consen 254 MG------FEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNP--------------IQINVGNKKELKANHNI 313 (519)
T ss_pred cc------cHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCc--------------eEEEecchhhhhhhcch
Confidence 88 7788888888884 44579999999987 445655443322 11111111 01111
Q ss_pred hHHHHhcChh----HHHHHHHHh--cCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHH
Q 000324 1553 EARMQAMTKP----TFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEE 1626 (1665)
Q Consensus 1553 ~~~~~~~~k~----~~~~i~~~l--~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~ 1626 (1665)
.+........ .+..++... ....++||||+|++.|..++..|.
T Consensus 314 ~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~------------------------------- 362 (519)
T KOG0331|consen 314 RQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLR------------------------------- 362 (519)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHH-------------------------------
Confidence 1111111111 122222222 345689999999999999997772
Q ss_pred HHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1627 MLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1627 ~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
..++++..+||+.++.+|..+++.|++|+..||||
T Consensus 363 ----~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVA 397 (519)
T KOG0331|consen 363 ----RKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVA 397 (519)
T ss_pred ----hcCcceeeecccccHHHHHHHHHhcccCCcceEEE
Confidence 23477999999999999999999999999999998
No 75
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.3e-31 Score=341.45 Aligned_cols=430 Identities=18% Similarity=0.204 Sum_probs=307.9
Q ss_pred HHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEE
Q 000324 502 RVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKV 581 (1665)
Q Consensus 502 ~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V 581 (1665)
.-+-.++..+..++|+||||||||+...+.++..... .+.+|+++.|+|--|..+++++.+.++ .++
T Consensus 56 ~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~----------~~g~I~~tQPRRlAArsvA~RvAeel~---~~~ 122 (845)
T COG1643 56 DEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLG----------IAGKIGCTQPRRLAARSVAERVAEELG---EKL 122 (845)
T ss_pred HHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcc----------cCCeEEecCchHHHHHHHHHHHHHHhC---CCc
Confidence 3445567788889999999999999988888876541 245899999999999999999988765 334
Q ss_pred EEEEC-CCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCC
Q 000324 582 RELSG-DQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEH 660 (1665)
Q Consensus 582 ~~ltG-d~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~ 660 (1665)
+..+| -..++......+.|-++|.+ +|+|.......++.+++|||||+| +|.-..+.++.-+.......+.+
T Consensus 123 G~~VGY~iRfe~~~s~~Trik~mTdG---iLlrei~~D~~Ls~ys~vIiDEaH----ERSl~tDilLgllk~~~~~rr~D 195 (845)
T COG1643 123 GETVGYSIRFESKVSPRTRIKVMTDG---ILLREIQNDPLLSGYSVVIIDEAH----ERSLNTDILLGLLKDLLARRRDD 195 (845)
T ss_pred CceeeEEEEeeccCCCCceeEEeccH---HHHHHHhhCcccccCCEEEEcchh----hhhHHHHHHHHHHHHHHhhcCCC
Confidence 44333 12233334457999999999 777777777889999999999999 67777777888777766776778
Q ss_pred eeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 000324 661 IRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFV 740 (1665)
Q Consensus 661 ~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv 740 (1665)
.|+|.||||+ |.+.++.+++..| + +..+.|..|++.+|........ .....+...+.. ....+.+.+|||.
T Consensus 196 LKiIimSATl-d~~rfs~~f~~ap---v--i~i~GR~fPVei~Y~~~~~~d~-~l~~ai~~~v~~--~~~~~~GdILvFL 266 (845)
T COG1643 196 LKLIIMSATL-DAERFSAYFGNAP---V--IEIEGRTYPVEIRYLPEAEADY-ILLDAIVAAVDI--HLREGSGSILVFL 266 (845)
T ss_pred ceEEEEeccc-CHHHHHHHcCCCC---E--EEecCCccceEEEecCCCCcch-hHHHHHHHHHHH--hccCCCCCEEEEC
Confidence 9999999999 7899999998654 3 4445566777766643322211 122222222211 1122378999999
Q ss_pred cChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCC
Q 000324 741 HSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGH 820 (1665)
Q Consensus 741 ~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~ 820 (1665)
+...+...+++.|.+..... ..-|..+||.|+.+++..+++.-..|.
T Consensus 267 pG~~EI~~~~~~L~~~~l~~---------------------------------~~~i~PLy~~L~~~eQ~rvF~p~~~~~ 313 (845)
T COG1643 267 PGQREIERTAEWLEKAELGD---------------------------------DLEILPLYGALSAEEQVRVFEPAPGGK 313 (845)
T ss_pred CcHHHHHHHHHHHHhccccC---------------------------------CcEEeeccccCCHHHHHhhcCCCCCCc
Confidence 99999999999998721110 123677899999999999999999998
Q ss_pred CCeEEeccccccccCCCceEEEEec----ccccCCCCCC----cccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcHH
Q 000324 821 VQVLVSTATLAWGVNLPAHTVIIKG----TQIYNPEKGA----WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR 892 (1665)
Q Consensus 821 i~VLVaT~tla~GVdlP~v~vVI~~----t~~yd~~~g~----~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~ 892 (1665)
.+|++||++++.++.+|++++||++ ...||+..|- .+++|.++..||.|||||.+ .|.||-+++.++
T Consensus 314 RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~---pGicyRLyse~~-- 388 (845)
T COG1643 314 RKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG---PGICYRLYSEED-- 388 (845)
T ss_pred ceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCC---CceEEEecCHHH--
Confidence 8899999999999999999999995 4578988873 37899999999999999985 899999999744
Q ss_pred HHHHhhcCCCccccchhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHHHH
Q 000324 893 YYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLV 972 (1665)
Q Consensus 893 ~y~~ll~~~~piES~l~~~l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li 972 (1665)
|..+...+.| ||....+. ..+-.+.. ..+..+|..+ +.++.+-...+
T Consensus 389 -~~~~~~~t~P---------------EIlrtdLs---~~vL~l~~----~G~~~d~~~f----------~fld~P~~~~i 435 (845)
T COG1643 389 -FLAFPEFTLP---------------EILRTDLS---GLVLQLKS----LGIGQDIAPF----------PFLDPPPEAAI 435 (845)
T ss_pred -HHhcccCCCh---------------hhhhcchH---HHHHHHHh----cCCCCCcccC----------ccCCCCChHHH
Confidence 3355444444 22211111 11111100 0000122221 12222233567
Q ss_pred HHHHHHHhHcCCcccccCCCccccChHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHhcCCc
Q 000324 973 HTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSE 1037 (1665)
Q Consensus 973 ~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~~s~s~ 1037 (1665)
..|+..|...|++..+. .+|++|+.||.++++|+-+++...+-...|. .+++.|.|+-+
T Consensus 436 ~~A~~~L~~LGAld~~g-----~LT~lG~~ms~lpldprLA~mLl~a~~~g~~-~e~~~Ias~Ls 494 (845)
T COG1643 436 QAALTLLQELGALDDSG-----KLTPLGKQMSLLPLDPRLARMLLTAPEGGCL-GEAATIASMLS 494 (845)
T ss_pred HHHHHHHHHcCCcCCCC-----CCCHHHHHHHhCCCChHHHHHHHhccccCcH-HHHHHHHHhhc
Confidence 88999999999998653 5999999999999999999999987775553 45555555433
No 76
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.1e-33 Score=317.62 Aligned_cols=283 Identities=20% Similarity=0.259 Sum_probs=226.0
Q ss_pred ccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCC-CeEEEEEcccHHHH
Q 000324 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETG-VMRAVYIAPLEALA 1403 (1665)
Q Consensus 1326 ~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~-~~r~l~I~PtreLa 1403 (1665)
.|+.+++.++-. ||..|||||.++||..+-|+| ++.||.||||||.+|.+|+|.++...+.+. .-|+||++|||||+
T Consensus 187 NLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkD-Ica~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELa 265 (691)
T KOG0338|consen 187 NLSRPLLKACSTLGYKKPTPIQVATIPVALLGKD-ICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELA 265 (691)
T ss_pred ccchHHHHHHHhcCCCCCCchhhhcccHHhhcch-hhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHH
Confidence 355678888876 999999999999999999888 999999999999999999999998743221 23899999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEeCCCccchh---ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCC
Q 000324 1404 KERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG 1480 (1665)
Q Consensus 1404 ~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~ 1480 (1665)
.|++...+ .++....+.|++..||.+...+ +...+||||+||++|.+++++.. ...+.++..+|+||||+|++.+
T Consensus 266 iQv~sV~~-qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~-sf~ldsiEVLvlDEADRMLeeg 343 (691)
T KOG0338|consen 266 IQVHSVTK-QLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSP-SFNLDSIEVLVLDEADRMLEEG 343 (691)
T ss_pred HHHHHHHH-HHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCC-CccccceeEEEechHHHHHHHH
Confidence 99999998 7888888999999999887633 45678999999999999998743 4578999999999999998777
Q ss_pred chhHHHHHHHHHHHHhhcCCCCeEEEEcccCCC-hHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhc
Q 000324 1481 GPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAM 1559 (1665)
Q Consensus 1481 g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n-~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~ 1559 (1665)
|...|+.|...++.+.|.++||||+.. .++++..--..+..+|.-++...+..+ .+.+..+
T Consensus 344 ------FademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~L------------tQEFiRI 405 (691)
T KOG0338|consen 344 ------FADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKL------------TQEFIRI 405 (691)
T ss_pred ------HHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhh------------hHHHhee
Confidence 999999999999999999999999987 456666544444444443333322222 1222111
Q ss_pred C------hh-HHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHh
Q 000324 1560 T------KP-TFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL 1632 (1665)
Q Consensus 1560 ~------k~-~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l 1632 (1665)
. ++ .+..++.. .-...+||||.|+++|..+-..| -.+
T Consensus 406 R~~re~dRea~l~~l~~r-tf~~~~ivFv~tKk~AHRl~Ill-----------------------------------GLl 449 (691)
T KOG0338|consen 406 RPKREGDREAMLASLITR-TFQDRTIVFVRTKKQAHRLRILL-----------------------------------GLL 449 (691)
T ss_pred ccccccccHHHHHHHHHH-hcccceEEEEehHHHHHHHHHHH-----------------------------------HHh
Confidence 1 22 22333333 23567999999999999887555 557
Q ss_pred cccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1633 RHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1633 ~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
+..++-+||.|++.+|...++.|++++|.||||
T Consensus 450 gl~agElHGsLtQ~QRlesL~kFk~~eidvLia 482 (691)
T KOG0338|consen 450 GLKAGELHGSLTQEQRLESLEKFKKEEIDVLIA 482 (691)
T ss_pred hchhhhhcccccHHHHHHHHHHHHhccCCEEEE
Confidence 888999999999999999999999999999998
No 77
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.7e-31 Score=335.09 Aligned_cols=286 Identities=18% Similarity=0.278 Sum_probs=216.3
Q ss_pred ccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcC----CCCeEEEEEcccH
Q 000324 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE----TGVMRAVYIAPLE 1400 (1665)
Q Consensus 1326 ~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~----~~~~r~l~I~Ptr 1400 (1665)
.|.+.+++.+.. ||..|||+|.+|++.++++++ ++++||||||||+||++|++..+..... ...+++|||+||+
T Consensus 7 ~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~d-vlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~Ptr 85 (456)
T PRK10590 7 GLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRD-LMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTR 85 (456)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCC-EEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcH
Confidence 355677777776 899999999999999999766 9999999999999999999999876321 1234899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchh---ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccC
Q 000324 1401 ALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1401 eLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~ 1477 (1665)
+||.|+++.+. .+....++++..++|+.+.+.+ +...++|+|+||++|..+... ....+.++++|||||||+++
T Consensus 86 eLa~Qi~~~~~-~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~--~~~~l~~v~~lViDEah~ll 162 (456)
T PRK10590 86 ELAAQIGENVR-DYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQ--NAVKLDQVEILVLDEADRML 162 (456)
T ss_pred HHHHHHHHHHH-HHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHc--CCcccccceEEEeecHHHHh
Confidence 99999999998 5666778999999999876632 345679999999999888765 44568899999999999998
Q ss_pred CCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCC-hHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHH
Q 000324 1478 GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARM 1556 (1665)
Q Consensus 1478 ~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n-~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~ 1556 (1665)
+.+ +...++.+...++...|++++|||+++ ..+++.++...+..+...........+..++...+...
T Consensus 163 ~~~------~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~----- 231 (456)
T PRK10590 163 DMG------FIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKR----- 231 (456)
T ss_pred ccc------cHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHH-----
Confidence 765 555666677777888999999999988 46777777654433322222222222222222111110
Q ss_pred HhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccE
Q 000324 1557 QAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGV 1636 (1665)
Q Consensus 1557 ~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI 1636 (1665)
.......+... ....++||||+|+..|..++..|. ..+..+
T Consensus 232 ---k~~~l~~l~~~-~~~~~~lVF~~t~~~~~~l~~~L~-----------------------------------~~g~~~ 272 (456)
T PRK10590 232 ---KRELLSQMIGK-GNWQQVLVFTRTKHGANHLAEQLN-----------------------------------KDGIRS 272 (456)
T ss_pred ---HHHHHHHHHHc-CCCCcEEEEcCcHHHHHHHHHHHH-----------------------------------HCCCCE
Confidence 01112222222 345689999999999999997772 235568
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1637 GYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1637 ~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
..+||+|++.+|..+++.|++|+++||||
T Consensus 273 ~~lhg~~~~~~R~~~l~~F~~g~~~iLVa 301 (456)
T PRK10590 273 AAIHGNKSQGARTRALADFKSGDIRVLVA 301 (456)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCCcEEEE
Confidence 99999999999999999999999999998
No 78
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.4e-31 Score=349.32 Aligned_cols=304 Identities=17% Similarity=0.225 Sum_probs=223.0
Q ss_pred cchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHH
Q 000324 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (1665)
Q Consensus 1327 L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q 1405 (1665)
|.+.+.+.+.. ||..|+|+|.+|++.+++|++ ++++||||||||+||.+|+++.+... +. +++|||+||+||+.|
T Consensus 21 l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~n-vvv~apTGSGKTla~~LPiL~~l~~~-~~--~~aL~l~PtraLa~q 96 (742)
T TIGR03817 21 AHPDVVAALEAAGIHRPWQHQARAAELAHAGRH-VVVATGTASGKSLAYQLPVLSALADD-PR--ATALYLAPTKALAAD 96 (742)
T ss_pred CCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCC-EEEECCCCCcHHHHHHHHHHHHHhhC-CC--cEEEEEcChHHHHHH
Confidence 44566666665 899999999999999998665 99999999999999999999999763 33 399999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEeCCCccchh--ccCCCcEEEEChhhHHHH-HH-hhhccccCCCccEEEeecccccCCCCc
Q 000324 1406 RYRDWEIKFGQGLGMRVVELTGETAMDLK--LLEKGQIIISTPEKWDAL-SR-RWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (1665)
Q Consensus 1406 ~~~~~~~~~~~~~~i~v~~l~G~~~~~~~--~l~~~~IIV~TPe~l~~l-~r-~~~~~~~l~~v~llViDEaH~l~~~~g 1481 (1665)
++..++ .++ ..++++..++|+++.+.+ +.++++|||+||+++... +. ..+.+..++++++|||||||.+.+.+|
T Consensus 97 ~~~~l~-~l~-~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg 174 (742)
T TIGR03817 97 QLRAVR-ELT-LRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFG 174 (742)
T ss_pred HHHHHH-Hhc-cCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccH
Confidence 999999 565 457899999999876533 345689999999998642 21 111224588999999999999987788
Q ss_pred hhHHHHHHHHHHHHhhcCCCCeEEEEcccCCChHHHHHHhcccCCcEEecCCCCCccce-EEEEeecccchhhH----HH
Q 000324 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPL-EIHIQGVDITNFEA----RM 1556 (1665)
Q Consensus 1482 ~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~~dl~~wl~~~~~~~~~f~~~~rpv~l-~i~i~~~~~~~~~~----~~ 1556 (1665)
..+..++.+++.+....+.++|++++|||++|..++++++...+. ..+.....|... .+.+.......... ..
T Consensus 175 ~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~--~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 252 (742)
T TIGR03817 175 SHVALVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIGAPV--VAVTEDGSPRGARTVALWEPPLTELTGENGAPV 252 (742)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCe--EEECCCCCCcCceEEEEecCCcccccccccccc
Confidence 999999999999998888899999999999999888887754432 223332222221 11110000000000 00
Q ss_pred -HhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhccc
Q 000324 1557 -QAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHG 1635 (1665)
Q Consensus 1557 -~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~g 1635 (1665)
..........+...+..+.++||||+||+.|+.++..|...... ....++.+
T Consensus 253 r~~~~~~~~~~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~---------------------------~~~~l~~~ 305 (742)
T TIGR03817 253 RRSASAEAADLLADLVAEGARTLTFVRSRRGAELVAAIARRLLGE---------------------------VDPDLAER 305 (742)
T ss_pred ccchHHHHHHHHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHh---------------------------hccccccc
Confidence 00001122233333345689999999999999999887432210 00123567
Q ss_pred EEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1636 VGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1636 I~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
|..|||+|++++|+.++++|++|++++|||
T Consensus 306 v~~~hgg~~~~eR~~ie~~f~~G~i~vLVa 335 (742)
T TIGR03817 306 VAAYRAGYLPEDRRELERALRDGELLGVAT 335 (742)
T ss_pred hhheecCCCHHHHHHHHHHHHcCCceEEEE
Confidence 899999999999999999999999999998
No 79
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-31 Score=311.53 Aligned_cols=477 Identities=17% Similarity=0.178 Sum_probs=329.6
Q ss_pred HHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCc
Q 000324 500 QSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDV 579 (1665)
Q Consensus 500 Q~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi 579 (1665)
-.+.+ .++..+..+||.|.||||||+.....+...-.. ..+.+|-+..|+|-.|..++.++.+- +|+
T Consensus 270 kdell-~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGyt---------k~gk~IgcTQPRRVAAmSVAaRVA~E---Mgv 336 (902)
T KOG0923|consen 270 KDELL-KAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYT---------KGGKKIGCTQPRRVAAMSVAARVAEE---MGV 336 (902)
T ss_pred HHHHH-HHHHhCcEEEEEcCCCCCccccccHHHHhcccc---------cCCceEeecCcchHHHHHHHHHHHHH---hCc
Confidence 33444 456778889999999999999766655443222 23556999999999999999998874 445
Q ss_pred EEEEEEC-CCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhcc
Q 000324 580 KVRELSG-DQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTK 658 (1665)
Q Consensus 580 ~V~~ltG-d~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~ 658 (1665)
+.+--+| ...+.+.....+-|-++|.+ +|+|.....+.+..+++|||||||. |.-..+.++.-+.. +....
T Consensus 337 kLG~eVGYsIRFEdcTSekTvlKYMTDG---mLlREfL~epdLasYSViiiDEAHE----RTL~TDILfgLvKD-Iar~R 408 (902)
T KOG0923|consen 337 KLGHEVGYSIRFEDCTSEKTVLKYMTDG---MLLREFLSEPDLASYSVIIVDEAHE----RTLHTDILFGLVKD-IARFR 408 (902)
T ss_pred ccccccceEEEeccccCcceeeeeecch---hHHHHHhccccccceeEEEeehhhh----hhhhhhHHHHHHHH-HHhhC
Confidence 5443333 22233333457889999999 7888887778899999999999994 33333333332222 22346
Q ss_pred CCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEE
Q 000324 659 EHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLI 738 (1665)
Q Consensus 659 ~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLV 738 (1665)
+..+++..|||+ +++.+..|+...| +|.+.+ |..|+..+|-..++.. .+.+....+.+ |+...+.+.+||
T Consensus 409 pdLKllIsSAT~-DAekFS~fFDdap---IF~iPG--RRyPVdi~Yt~~PEAd---YldAai~tVlq-IH~tqp~GDILV 478 (902)
T KOG0923|consen 409 PDLKLLISSATM-DAEKFSAFFDDAP---IFRIPG--RRYPVDIFYTKAPEAD---YLDAAIVTVLQ-IHLTQPLGDILV 478 (902)
T ss_pred CcceEEeecccc-CHHHHHHhccCCc---EEeccC--cccceeeecccCCchh---HHHHHHhhhee-eEeccCCccEEE
Confidence 899999999998 7899999998765 666655 4455555544333322 22221111111 222233689999
Q ss_pred EecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhC
Q 000324 739 FVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGD 818 (1665)
Q Consensus 739 Fv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~ 818 (1665)
|.....+.+.+...|.+.....+.- .+++ -|..+||.|+.+.+..|++.-..
T Consensus 479 FltGQeEIEt~~e~l~~~~~~LGsk-------------------------i~el---iv~PiYaNLPselQakIFePtP~ 530 (902)
T KOG0923|consen 479 FLTGQEEIETVKENLKERCRRLGSK-------------------------IREL---IVLPIYANLPSELQAKIFEPTPP 530 (902)
T ss_pred EeccHHHHHHHHHHHHHHHHHhccc-------------------------cceE---EEeeccccCChHHHHhhcCCCCC
Confidence 9999999988888887764322110 1111 25667999999999999999999
Q ss_pred CCCCeEEeccccccccCCCceEEEEec----ccccCCCCC----CcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCc
Q 000324 819 GHVQVLVSTATLAWGVNLPAHTVIIKG----TQIYNPEKG----AWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (1665)
Q Consensus 819 g~i~VLVaT~tla~GVdlP~v~vVI~~----t~~yd~~~g----~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~ 890 (1665)
|..+|++||++++.++.++++.+||+- ...|+|.+| ..+++|.++..||+|||||.| +|.|+.+++...
T Consensus 531 gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg---PGKCfRLYt~~a 607 (902)
T KOG0923|consen 531 GARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG---PGKCFRLYTAWA 607 (902)
T ss_pred CceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC---CCceEEeechhh
Confidence 999999999999999999999999984 356888887 347899999999999999997 899999999654
Q ss_pred HHHHHHhhcCCCccccchhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHH
Q 000324 891 LRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRAD 970 (1665)
Q Consensus 891 ~~~y~~ll~~~~piES~l~~~l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~ 970 (1665)
....+. ..++..-...+|......--++|. .|.++| -| . +.| ..+
T Consensus 608 Y~~eLE----~~t~PEIqRtnL~nvVL~LkSLGI----~Dl~~F---dF-----------m--------DpP-----p~e 652 (902)
T KOG0923|consen 608 YEHELE----EMTVPEIQRTNLGNVVLLLKSLGI----HDLIHF---DF-----------L--------DPP-----PTE 652 (902)
T ss_pred hhhhhc----cCCCcceeeccchhHHHHHHhcCc----chhccc---cc-----------C--------CCC-----ChH
Confidence 332221 122222223344444444444442 222221 11 1 111 124
Q ss_pred HHHHHHHHHhHcCCcccccCCCccccChHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHhcCCccCCCCcCChhHHH
Q 000324 971 LVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKM 1050 (1665)
Q Consensus 971 li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~~s~s~Ef~~i~~R~~E~~ 1050 (1665)
.+..|+..|-..|.+.-. | .+|.+||.||.|+++|...+++..+-+..|+ .+|+.|.|+.+.+..++.|+.++.
T Consensus 653 tL~~aLE~LyaLGALn~~---G--eLTk~GrrMaEfP~dPmlsKmi~as~ky~cs-~EiitiaamlS~~~svfyrpk~~~ 726 (902)
T KOG0923|consen 653 TLLKALEQLYALGALNHL---G--ELTKLGRRMAEFPVDPMLSKMIVASEKYKCS-EEIITIAAMLSVGASVFYRPKDKQ 726 (902)
T ss_pred HHHHHHHHHHHhhccccc---c--chhhhhhhhhhcCCCHHHHhHHhhhccccch-HHHHHHHHHHhcCchheecchhhh
Confidence 567789999999998644 3 8999999999999999999999988888876 899999999999999999998876
Q ss_pred HHHHHhccCCCCCCCCCCChHHHHHHHHHHHHcCCC
Q 000324 1051 ELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLK 1086 (1665)
Q Consensus 1051 ~l~~l~~~~~~~~~~~~~~~~~K~~~Llqa~is~~~ 1086 (1665)
.-..-+.+ + +..+..--.+||+.|-+...
T Consensus 727 v~ad~a~~---~----f~~~~gDhi~~L~vyn~w~e 755 (902)
T KOG0923|consen 727 VHADNARK---N----FEEPVGDHIVLLNVYNQWKE 755 (902)
T ss_pred hhhhhhhh---c----cCCCCcchhhhhHHHHHHhh
Confidence 44332211 1 22334445667777776543
No 80
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=3.7e-31 Score=333.63 Aligned_cols=282 Identities=19% Similarity=0.282 Sum_probs=213.5
Q ss_pred cchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHH
Q 000324 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (1665)
Q Consensus 1327 L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q 1405 (1665)
|.+.+++.+.. ||..|||+|.+|++.++++++ ++++||||||||++|.+|++.++..... .+++||++||+||+.|
T Consensus 11 l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~d-vi~~a~TGsGKT~a~~lpil~~l~~~~~--~~~~lil~PtreLa~Q 87 (460)
T PRK11776 11 LPPALLANLNELGYTEMTPIQAQSLPAILAGKD-VIAQAKTGSGKTAAFGLGLLQKLDVKRF--RVQALVLCPTRELADQ 87 (460)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCC-EEEECCCCCcHHHHHHHHHHHHhhhccC--CceEEEEeCCHHHHHH
Confidence 55667777776 899999999999999999766 9999999999999999999999876322 3489999999999999
Q ss_pred HHHHHHHHhcCC-CCcEEEEEeCCCccchh---ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCc
Q 000324 1406 RYRDWEIKFGQG-LGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (1665)
Q Consensus 1406 ~~~~~~~~~~~~-~~i~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g 1481 (1665)
+.+.++ .++.. .++++..++|+.+.+.+ +...++|+|+||++|..++++ ....+.++++||+||||++++.+
T Consensus 88 ~~~~~~-~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~--~~~~l~~l~~lViDEad~~l~~g- 163 (460)
T PRK11776 88 VAKEIR-RLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRK--GTLDLDALNTLVLDEADRMLDMG- 163 (460)
T ss_pred HHHHHH-HHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHc--CCccHHHCCEEEEECHHHHhCcC-
Confidence 999998 45443 47899999999876532 335679999999999998876 44568899999999999998765
Q ss_pred hhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh-HHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcC
Q 000324 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT 1560 (1665)
Q Consensus 1482 ~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~-~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~ 1560 (1665)
+...+..+...++...|++++|||+++. ..++..+...+.. +.+.+......+........... .
T Consensus 164 -----~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~-i~~~~~~~~~~i~~~~~~~~~~~---k----- 229 (460)
T PRK11776 164 -----FQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVE-VKVESTHDLPAIEQRFYEVSPDE---R----- 229 (460)
T ss_pred -----cHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEE-EEECcCCCCCCeeEEEEEeCcHH---H-----
Confidence 5556666777778899999999999874 4555554333322 22222222222333222221111 1
Q ss_pred hhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEc
Q 000324 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640 (1665)
Q Consensus 1561 k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H 1640 (1665)
......++.. ....++||||+|++.|+.++..|. ..+..+..+|
T Consensus 230 ~~~l~~ll~~-~~~~~~lVF~~t~~~~~~l~~~L~-----------------------------------~~~~~v~~~h 273 (460)
T PRK11776 230 LPALQRLLLH-HQPESCVVFCNTKKECQEVADALN-----------------------------------AQGFSALALH 273 (460)
T ss_pred HHHHHHHHHh-cCCCceEEEECCHHHHHHHHHHHH-----------------------------------hCCCcEEEEe
Confidence 1122223333 345679999999999999998883 2356789999
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1641 EGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1641 ~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
|+|++.+|..+++.|++|.++||||
T Consensus 274 g~~~~~eR~~~l~~F~~g~~~vLVa 298 (460)
T PRK11776 274 GDLEQRDRDQVLVRFANRSCSVLVA 298 (460)
T ss_pred CCCCHHHHHHHHHHHHcCCCcEEEE
Confidence 9999999999999999999999998
No 81
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-31 Score=333.66 Aligned_cols=284 Identities=21% Similarity=0.323 Sum_probs=216.5
Q ss_pred cchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhh-cCCCCeEEEEEcccHHHHH
Q 000324 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA-SETGVMRAVYIAPLEALAK 1404 (1665)
Q Consensus 1327 L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~-~~~~~~r~l~I~PtreLa~ 1404 (1665)
|...+++.+.. ||..|+|||.+++|.++.|+| +++.|+||||||++|.+|+++.+... ..... .+||++||||||.
T Consensus 36 l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~D-vi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~-~aLil~PTRELA~ 113 (513)
T COG0513 36 LSPELLQALKDLGFEEPTPIQLAAIPLILAGRD-VLGQAQTGTGKTAAFLLPLLQKILKSVERKYV-SALILAPTRELAV 113 (513)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCC-EEEECCCCChHHHHHHHHHHHHHhcccccCCC-ceEEECCCHHHHH
Confidence 66778888887 899999999999999999877 99999999999999999999998742 22221 2999999999999
Q ss_pred HHHHHHHHHhcCCC-CcEEEEEeCCCccchh--ccC-CCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCC
Q 000324 1405 ERYRDWEIKFGQGL-GMRVVELTGETAMDLK--LLE-KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG 1480 (1665)
Q Consensus 1405 Q~~~~~~~~~~~~~-~i~v~~l~G~~~~~~~--~l~-~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~ 1480 (1665)
|+++.+. .++... ++++..++|+.+...+ .++ ++|||||||+|+.+++.+ ....+.++.++|+||||.|++++
T Consensus 114 Qi~~~~~-~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~--~~l~l~~v~~lVlDEADrmLd~G 190 (513)
T COG0513 114 QIAEELR-KLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKR--GKLDLSGVETLVLDEADRMLDMG 190 (513)
T ss_pred HHHHHHH-HHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHc--CCcchhhcCEEEeccHhhhhcCC
Confidence 9999999 788777 7999999999877633 333 589999999999999987 46789999999999999999987
Q ss_pred chhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh-HHHHHHhcccCCcEEecCC-CC--CccceEEEEeecccchhhHHH
Q 000324 1481 GPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPP-GV--RPVPLEIHIQGVDITNFEARM 1556 (1665)
Q Consensus 1481 g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~-~dl~~wl~~~~~~~~~f~~-~~--rpv~l~i~i~~~~~~~~~~~~ 1556 (1665)
|...+..|.+.++.+.|+++||||+++. ..++.-+-..+. .....+ .. .+..+...+... .....
T Consensus 191 ------f~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~-~i~v~~~~~~~~~~~i~q~~~~v--~~~~~-- 259 (513)
T COG0513 191 ------FIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPV-EIEVSVEKLERTLKKIKQFYLEV--ESEEE-- 259 (513)
T ss_pred ------CHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCc-EEEEccccccccccCceEEEEEe--CCHHH--
Confidence 8889999999999999999999999983 133322222221 222221 11 111111111111 11000
Q ss_pred HhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccE
Q 000324 1557 QAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGV 1636 (1665)
Q Consensus 1557 ~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI 1636 (1665)
....+..++.. ....++||||+|++.|..++..| ...++.+
T Consensus 260 ---k~~~L~~ll~~-~~~~~~IVF~~tk~~~~~l~~~l-----------------------------------~~~g~~~ 300 (513)
T COG0513 260 ---KLELLLKLLKD-EDEGRVIVFVRTKRLVEELAESL-----------------------------------RKRGFKV 300 (513)
T ss_pred ---HHHHHHHHHhc-CCCCeEEEEeCcHHHHHHHHHHH-----------------------------------HHCCCeE
Confidence 01112222222 23346999999999999999777 3456779
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1637 GYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1637 ~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
+.+||+|++.+|..+++.|++|.++||||
T Consensus 301 ~~lhG~l~q~~R~~~l~~F~~g~~~vLVa 329 (513)
T COG0513 301 AALHGDLPQEERDRALEKFKDGELRVLVA 329 (513)
T ss_pred EEecCCCCHHHHHHHHHHHHcCCCCEEEE
Confidence 99999999999999999999999999998
No 82
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=2.9e-31 Score=353.17 Aligned_cols=300 Identities=22% Similarity=0.351 Sum_probs=221.6
Q ss_pred HHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcC----CCCeEEEEEcccHHHHHH
Q 000324 1331 LYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE----TGVMRAVYIAPLEALAKE 1405 (1665)
Q Consensus 1331 ~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~----~~~~r~l~I~PtreLa~Q 1405 (1665)
.+...+. +|..|||+|++|++.++.++ |++++||||||||++|++|++.++..... ..++++|||+|++||+.|
T Consensus 21 ~v~~~~~~~~~~~tpiQ~~Ai~~il~g~-nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~d 99 (876)
T PRK13767 21 YVREWFKEKFGTFTPPQRYAIPLIHEGK-NVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNND 99 (876)
T ss_pred HHHHHHHHccCCCCHHHHHHHHHHHcCC-CEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHH
Confidence 3444444 79999999999999998865 59999999999999999999998875321 224589999999999999
Q ss_pred HHHHHHHHh----------cCCC-CcEEEEEeCCCccchh--cc-CCCcEEEEChhhHHHHHHhhhccccCCCccEEEee
Q 000324 1406 RYRDWEIKF----------GQGL-GMRVVELTGETAMDLK--LL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIID 1471 (1665)
Q Consensus 1406 ~~~~~~~~~----------~~~~-~i~v~~l~G~~~~~~~--~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViD 1471 (1665)
+++++...+ +... ++++..++|+++.+.+ .+ ..++|+|+|||+|..++.....+..+.++++||+|
T Consensus 100 i~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVID 179 (876)
T PRK13767 100 IHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVD 179 (876)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEe
Confidence 998765322 2222 7889999999887643 33 46799999999999888765444568899999999
Q ss_pred cccccCC-CCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCChHHHHHHhcccC-----Cc-EEecCCCCCccceEEEE
Q 000324 1472 ELHLIGG-QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATS-----HG-LFNFPPGVRPVPLEIHI 1544 (1665)
Q Consensus 1472 EaH~l~~-~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~~dl~~wl~~~~-----~~-~~~f~~~~rpv~l~i~i 1544 (1665)
|+|.+.+ .+|..++..+.++..+. +.+.|+|++|||++|..+++.|++... .. .+......++..+.+..
T Consensus 180 E~H~l~~~~RG~~l~~~L~rL~~l~---~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~ 256 (876)
T PRK13767 180 EIHSLAENKRGVHLSLSLERLEELA---GGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVIS 256 (876)
T ss_pred chhhhccCccHHHHHHHHHHHHHhc---CCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEec
Confidence 9999985 56999999999988774 457899999999999999999997642 11 11112222333333221
Q ss_pred eecccchhhHHHHhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhh
Q 000324 1545 QGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQ 1624 (1665)
Q Consensus 1545 ~~~~~~~~~~~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~ 1624 (1665)
....... .....+....+..+...+..++++||||||+++|+.++..|...+..
T Consensus 257 p~~~l~~--~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~------------------------ 310 (876)
T PRK13767 257 PVDDLIH--TPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPE------------------------ 310 (876)
T ss_pred cCccccc--cccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchh------------------------
Confidence 1110000 00011223344555555566789999999999999999888532210
Q ss_pred HHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1625 EEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1625 d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
.....+|++|||+|++.+|..+++.|++|.++||||
T Consensus 311 -----~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVa 346 (876)
T PRK13767 311 -----EYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVS 346 (876)
T ss_pred -----hccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEE
Confidence 023568999999999999999999999999999998
No 83
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=5.6e-31 Score=334.96 Aligned_cols=287 Identities=18% Similarity=0.227 Sum_probs=214.2
Q ss_pred ccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhc---CCCCeEEEEEcccHH
Q 000324 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS---ETGVMRAVYIAPLEA 1401 (1665)
Q Consensus 1326 ~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~---~~~~~r~l~I~Ptre 1401 (1665)
.+.+.+++.|.. ||..|+|+|.+++|.++.+++ ++++||||||||++|++|++.++...+ ...++++|||+||+|
T Consensus 136 ~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~d-vI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTre 214 (545)
T PTZ00110 136 SFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRD-MIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRE 214 (545)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCC-EEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHH
Confidence 456677888876 899999999999999999876 999999999999999999998876532 223468999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEEeCCCccch---hccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCC
Q 000324 1402 LAKERYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (1665)
Q Consensus 1402 La~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~ 1478 (1665)
||.|+.+.++ .|+...++++..++|+.+... .+...++|+|+||++|..++.. ....+.++++||+||||++++
T Consensus 215 La~Qi~~~~~-~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~--~~~~l~~v~~lViDEAd~mld 291 (545)
T PTZ00110 215 LAEQIREQCN-KFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLES--NVTNLRRVTYLVLDEADRMLD 291 (545)
T ss_pred HHHHHHHHHH-HHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHc--CCCChhhCcEEEeehHHhhhh
Confidence 9999999998 787777889999999876542 2445679999999999988876 345688999999999999987
Q ss_pred CCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh-HHHHHHhcccCCcEEecCCCCCc--cceEEEEeecccchhhHH
Q 000324 1479 QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRP--VPLEIHIQGVDITNFEAR 1555 (1665)
Q Consensus 1479 ~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~-~dl~~wl~~~~~~~~~f~~~~rp--v~l~i~i~~~~~~~~~~~ 1555 (1665)
++ +...++.+..++.+..|++++|||++.. ..++.++.......++....... ..+...+.... ...
T Consensus 292 ~g------f~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~--~~~-- 361 (545)
T PTZ00110 292 MG------FEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVE--EHE-- 361 (545)
T ss_pred cc------hHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEe--chh--
Confidence 66 5556667777778899999999999873 46666654322222222111100 01111111111 000
Q ss_pred HHhcChhHHHHHHHHhc-CCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcc
Q 000324 1556 MQAMTKPTFTAIVQHAK-NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRH 1634 (1665)
Q Consensus 1556 ~~~~~k~~~~~i~~~l~-~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~ 1634 (1665)
....+..++..+. ...++||||+|++.|+.++..|. ..++
T Consensus 362 ----k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~-----------------------------------~~g~ 402 (545)
T PTZ00110 362 ----KRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELR-----------------------------------LDGW 402 (545)
T ss_pred ----HHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHH-----------------------------------HcCC
Confidence 0111222333322 56789999999999999998772 2345
Q ss_pred cEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1635 GVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1635 gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
.+..+||+|++.+|..+++.|++|+++||||
T Consensus 403 ~~~~ihg~~~~~eR~~il~~F~~G~~~ILVa 433 (545)
T PTZ00110 403 PALCIHGDKKQEERTWVLNEFKTGKSPIMIA 433 (545)
T ss_pred cEEEEECCCcHHHHHHHHHHHhcCCCcEEEE
Confidence 6789999999999999999999999999998
No 84
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.98 E-value=3.1e-31 Score=346.16 Aligned_cols=352 Identities=21% Similarity=0.280 Sum_probs=265.4
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
.|+..|+++|.+|+..+.++ +|+||++|||||||.+|++||+..+.+.. ..++|||.||+|||+.|.++|
T Consensus 66 ~g~~~lY~HQ~~A~~~~~~G-~~vvVtTgTgSGKTe~FllPIld~~l~~~---------~a~AL~lYPtnALa~DQ~~rl 135 (851)
T COG1205 66 AGIERLYSHQVDALRLIREG-RNVVVTTGTGSGKTESFLLPILDHLLRDP---------SARALLLYPTNALANDQAERL 135 (851)
T ss_pred hccccccHHHHHHHHHHHCC-CCEEEECCCCCchhHHHHHHHHHHHhhCc---------CccEEEEechhhhHhhHHHHH
Confidence 57778999999999988776 77999999999999999999999998763 238999999999999999999
Q ss_pred HHhhccCC--cEEEEEECCCcccHhh---hccccEEEeChhhHHH-HHhhcCC-CccccceeEEEEecccccccCCchHH
Q 000324 571 SNRLQMYD--VKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDI-ITRKSGD-RTYTQLVKLLIIDEIHLLHDNRGPVL 643 (1665)
Q Consensus 571 ~~~~~~~g--i~V~~ltGd~~~~~~~---~~~~~IiV~TPekld~-l~r~~~~-~~~l~~v~liIiDEaH~l~d~rg~~l 643 (1665)
++....++ +.+..++||+..+... .+.++|++|||.+|+. ++|.... ...+.++++||+||+|..-.-+|..+
T Consensus 136 ~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~v 215 (851)
T COG1205 136 RELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEV 215 (851)
T ss_pred HHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHH
Confidence 99988776 8999999999988773 5789999999999976 5555432 34567799999999999987899999
Q ss_pred HHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHH---HHHH
Q 000324 644 ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRF---QLMN 720 (1665)
Q Consensus 644 e~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~---~~~~ 720 (1665)
..++.|+++.+...+.+.++|+.|||+.|..+.+.-+....-. ..++.+..|-.....+...+........ ....
T Consensus 216 A~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~--~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~ 293 (851)
T COG1205 216 ALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFE--VPVDEDGSPRGLRYFVRREPPIRELAESIRRSALA 293 (851)
T ss_pred HHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcce--eeccCCCCCCCceEEEEeCCcchhhhhhcccchHH
Confidence 9999999999998889999999999999977666554332111 1134444444443333332211100000 1111
Q ss_pred HHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEe
Q 000324 721 DLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIH 800 (1665)
Q Consensus 721 ~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~ 800 (1665)
..-.-.-.....+-++|+|+.+|+.++.++...+....... . -+..-+..|
T Consensus 294 ~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~-~----------------------------~l~~~v~~~ 344 (851)
T COG1205 294 ELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREG-G----------------------------KLLDAVSTY 344 (851)
T ss_pred HHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcc-h----------------------------hhhhheeec
Confidence 11000111122367999999999999998765554432211 0 011347889
Q ss_pred cCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCce
Q 000324 801 HAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYG 880 (1665)
Q Consensus 801 Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G 880 (1665)
||+|...+|.+++..|+.|++.++++|++++-|||+-++..||. +.-|. -|..+++||+|||||.+ ..+
T Consensus 345 ~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~----~g~P~-----~s~~~~~Q~~GRaGR~~--~~~ 413 (851)
T COG1205 345 RAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIA----YGYPG-----VSVLSFRQRAGRAGRRG--QES 413 (851)
T ss_pred cccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhh----cCCCC-----chHHHHHHhhhhccCCC--CCc
Confidence 99999999999999999999999999999999999999999998 44332 16889999999999987 566
Q ss_pred EEEEEeCCCcHHHH
Q 000324 881 EGIIITGHSELRYY 894 (1665)
Q Consensus 881 ~~iil~~~~~~~~y 894 (1665)
..+++...+-.+.|
T Consensus 414 l~~~v~~~~~~d~y 427 (851)
T COG1205 414 LVLVVLRSDPLDSY 427 (851)
T ss_pred eEEEEeCCCccchh
Confidence 66766665544433
No 85
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.98 E-value=1.2e-30 Score=325.38 Aligned_cols=284 Identities=19% Similarity=0.273 Sum_probs=207.1
Q ss_pred ccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcC-----CCCeEEEEEccc
Q 000324 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE-----TGVMRAVYIAPL 1399 (1665)
Q Consensus 1326 ~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~-----~~~~r~l~I~Pt 1399 (1665)
.|++.+++.+.. ||..|+|+|++|+|.++.|++ ++++||||||||+||++|++..+...+. ..++++|||+||
T Consensus 14 ~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~d-vi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~Pt 92 (423)
T PRK04837 14 ALHPQVVEALEKKGFHNCTPIQALALPLTLAGRD-VAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPT 92 (423)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCc-EEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCc
Confidence 466778888877 899999999999999999776 9999999999999999999998875322 123589999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchh---ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeeccccc
Q 000324 1400 EALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 1476 (1665)
Q Consensus 1400 reLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l 1476 (1665)
+|||.|+++.+. .+....++++..++|+...+.. +..+++|+|+||+++..+++. ....+.+++++|+||||++
T Consensus 93 reLa~Qi~~~~~-~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~--~~~~l~~v~~lViDEad~l 169 (423)
T PRK04837 93 RELAVQIHADAE-PLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQ--NHINLGAIQVVVLDEADRM 169 (423)
T ss_pred HHHHHHHHHHHH-HHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHc--CCcccccccEEEEecHHHH
Confidence 999999999988 6776778999999998765422 334579999999999988865 4556889999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHhhcCC--CCeEEEEcccCCCh-HHHH-HHhcccCCcEEecCCCCCc-cceEEEEeecccch
Q 000324 1477 GGQGGPVLEVIVSRMRYIASQVEN--KIRIVALSTSLANA-KDLG-EWIGATSHGLFNFPPGVRP-VPLEIHIQGVDITN 1551 (1665)
Q Consensus 1477 ~~~~g~~~e~~~srl~~i~~~~~~--~~riI~lSATl~n~-~dl~-~wl~~~~~~~~~f~~~~rp-v~l~i~i~~~~~~~ 1551 (1665)
.+.+ +...+..+...++. ..+.+++|||++.. ..++ .++.. .....+.+.... ..+.... +. ..
T Consensus 170 ~~~~------f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~--p~~i~v~~~~~~~~~i~~~~--~~-~~ 238 (423)
T PRK04837 170 FDLG------FIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNN--PEYVEVEPEQKTGHRIKEEL--FY-PS 238 (423)
T ss_pred hhcc------cHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCC--CEEEEEcCCCcCCCceeEEE--Ee-CC
Confidence 8765 44555555555553 45679999999864 2333 23322 122222222211 1111111 10 01
Q ss_pred hhHHHHhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHH
Q 000324 1552 FEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKAT 1631 (1665)
Q Consensus 1552 ~~~~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~ 1631 (1665)
.... ...+..++.. ....++||||+++..|+.++..|. .
T Consensus 239 ~~~k-----~~~l~~ll~~-~~~~~~lVF~~t~~~~~~l~~~L~-----------------------------------~ 277 (423)
T PRK04837 239 NEEK-----MRLLQTLIEE-EWPDRAIIFANTKHRCEEIWGHLA-----------------------------------A 277 (423)
T ss_pred HHHH-----HHHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHHH-----------------------------------h
Confidence 1111 1112222222 345679999999999999997772 2
Q ss_pred hcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1632 LRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1632 l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
.++.+.++||+|++.+|..+++.|++|+++||||
T Consensus 278 ~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVa 311 (423)
T PRK04837 278 DGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVA 311 (423)
T ss_pred CCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEE
Confidence 4567999999999999999999999999999998
No 86
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.98 E-value=6.6e-31 Score=318.10 Aligned_cols=301 Identities=21% Similarity=0.233 Sum_probs=202.2
Q ss_pred HHHHHHHHHHcCCC-cEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhcc-
Q 000324 499 VQSRVYKSALSSAD-NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQM- 576 (1665)
Q Consensus 499 iQ~~~i~~~l~~~~-nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~- 576 (1665)
+|.++|+++++++. +++++||||||||.+|+++++.. ..+++|++|+++|+.|++++|.+.+..
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~--------------~~~~~~~~P~~aL~~~~~~~~~~~~~~~ 66 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG--------------ENDTIALYPTNALIEDQTEAIKEFVDVF 66 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc--------------CCCEEEEeChHHHHHHHHHHHHHHHHhc
Confidence 49999999999875 68999999999999999998842 236899999999999999999998753
Q ss_pred ---CCcEEEEEECCCcccHh-----------------------hhccccEEEeChhhHHHHHhhcCC------Cccccce
Q 000324 577 ---YDVKVRELSGDQTLTRQ-----------------------QIEETQIIVTTPEKWDIITRKSGD------RTYTQLV 624 (1665)
Q Consensus 577 ---~gi~V~~ltGd~~~~~~-----------------------~~~~~~IiV~TPekld~l~r~~~~------~~~l~~v 624 (1665)
.++.+..++|+...+.+ ....++|++|||+.|+.++|.+.. ..++..+
T Consensus 67 ~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~ 146 (357)
T TIGR03158 67 KPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKF 146 (357)
T ss_pred CCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCC
Confidence 36788888987332200 013578999999999998887522 1236889
Q ss_pred eEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhcc--ccCceEEecC---------
Q 000324 625 KLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN--LEKGLFYFDN--------- 693 (1665)
Q Consensus 625 ~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~--~~~~~~~f~~--------- 693 (1665)
++|||||+|.+.......+...+..+ ..+.......|+|+||||++. .+..++... ....+....+
T Consensus 147 ~~iV~DE~H~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~i~lSAT~~~--~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~ 223 (357)
T TIGR03158 147 STVIFDEFHLYDAKQLVGMLFLLAYM-QLIRFFECRRKFVFLSATPDP--ALILRLQNAKQAGVKIAPIDGEKYQFPDNP 223 (357)
T ss_pred CEEEEecccccCcccchhhhhhhHHH-HHHHhhhcCCcEEEEecCCCH--HHHHHHHhccccCceeeeecCcccccCCCh
Confidence 99999999998754433333222222 222222335799999999874 444444321 1111111111
Q ss_pred ---------CCccc--cceEEEEeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccc
Q 000324 694 ---------SYRPV--PLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDT 762 (1665)
Q Consensus 694 ---------~~rpv--~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~ 762 (1665)
.+||+ ++.+.+.. ........+..+.+.+.+.+ ....++++||||+|++.+..++..|.+.+.
T Consensus 224 ~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~-~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~---- 297 (357)
T TIGR03158 224 ELEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERF-RQLPGERGAIILDSLDEVNRLSDLLQQQGL---- 297 (357)
T ss_pred hhhccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHH-hccCCCeEEEEECCHHHHHHHHHHHhhhCC----
Confidence 24443 34443332 21111111222222211111 112467999999999999999999986421
Q ss_pred cccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEE
Q 000324 763 LGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVI 842 (1665)
Q Consensus 763 l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vV 842 (1665)
...+..+||.+++.+|..+ +..+|||||+++++|||+|.+. |
T Consensus 298 -------------------------------~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~~-v 339 (357)
T TIGR03158 298 -------------------------------GDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRDW-L 339 (357)
T ss_pred -------------------------------CceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCce-E
Confidence 1235678999999998754 4789999999999999999874 4
Q ss_pred EecccccCCCCCCcccCCHHHHHhhhcccC
Q 000324 843 IKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (1665)
Q Consensus 843 I~~t~~yd~~~g~~~~~s~~~~~Qr~GRAG 872 (1665)
|. +|. +..+|+||+||+|
T Consensus 340 i~-----~p~-------~~~~yiqR~GR~g 357 (357)
T TIGR03158 340 IF-----SAR-------DAAAFWQRLGRLG 357 (357)
T ss_pred EE-----CCC-------CHHHHhhhcccCC
Confidence 42 332 6789999999998
No 87
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.98 E-value=8.1e-31 Score=332.73 Aligned_cols=287 Identities=20% Similarity=0.265 Sum_probs=208.6
Q ss_pred ccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhc-----CCCCeEEEEEccc
Q 000324 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-----ETGVMRAVYIAPL 1399 (1665)
Q Consensus 1326 ~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~-----~~~~~r~l~I~Pt 1399 (1665)
.|.+.+++.+.. ||..|||+|.+|++.++.+++ ++++||||||||++|++|++.++.... ...++++|||+||
T Consensus 127 ~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~d-viv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PT 205 (518)
T PLN00206 127 GLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRS-LLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPT 205 (518)
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCC-EEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCC
Confidence 466778888876 899999999999999998665 999999999999999999998876421 1234699999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccch---hccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeeccccc
Q 000324 1400 EALAKERYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 1476 (1665)
Q Consensus 1400 reLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l 1476 (1665)
+|||.|+.+.++ .+....++++..+.|+..... ++..+++|||+||++|..++.+ ....+.++++||+||||++
T Consensus 206 reLa~Qi~~~~~-~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~--~~~~l~~v~~lViDEad~m 282 (518)
T PLN00206 206 RELCVQVEDQAK-VLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSK--HDIELDNVSVLVLDEVDCM 282 (518)
T ss_pred HHHHHHHHHHHH-HHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHc--CCccchheeEEEeecHHHH
Confidence 999999999888 777777888888888765542 2345679999999999888876 3567899999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh-HHHHHHhcccCCcEEecCCCCCccc-eEEEEeecccchhhH
Q 000324 1477 GGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVP-LEIHIQGVDITNFEA 1554 (1665)
Q Consensus 1477 ~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~-~dl~~wl~~~~~~~~~f~~~~rpv~-l~i~i~~~~~~~~~~ 1554 (1665)
++.+ +...+..+...+ ++.|++++|||+++. ..++.++.... ..+.+....++.. +...........
T Consensus 283 l~~g------f~~~i~~i~~~l-~~~q~l~~SATl~~~v~~l~~~~~~~~-~~i~~~~~~~~~~~v~q~~~~~~~~~--- 351 (518)
T PLN00206 283 LERG------FRDQVMQIFQAL-SQPQVLLFSATVSPEVEKFASSLAKDI-ILISIGNPNRPNKAVKQLAIWVETKQ--- 351 (518)
T ss_pred hhcc------hHHHHHHHHHhC-CCCcEEEEEeeCCHHHHHHHHHhCCCC-EEEEeCCCCCCCcceeEEEEeccchh---
Confidence 8765 333344444444 467999999999874 46777765432 2333333222221 111111111000
Q ss_pred HHHhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcc
Q 000324 1555 RMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRH 1634 (1665)
Q Consensus 1555 ~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~ 1634 (1665)
. ....+..+........++||||+|+..|+.++..|. ...+.
T Consensus 352 k----~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~----------------------------------~~~g~ 393 (518)
T PLN00206 352 K----KQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAIT----------------------------------VVTGL 393 (518)
T ss_pred H----HHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHh----------------------------------hccCc
Confidence 0 011122222221224579999999999999987662 12345
Q ss_pred cEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1635 GVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1635 gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
.+..+||+|++.+|..+++.|++|+++||||
T Consensus 394 ~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVa 424 (518)
T PLN00206 394 KALSIHGEKSMKERREVMKSFLVGEVPVIVA 424 (518)
T ss_pred ceEEeeCCCCHHHHHHHHHHHHCCCCCEEEE
Confidence 6889999999999999999999999999998
No 88
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.98 E-value=8e-31 Score=334.41 Aligned_cols=285 Identities=22% Similarity=0.333 Sum_probs=208.7
Q ss_pred cchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhc-----CCCCeEEEEEcccH
Q 000324 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-----ETGVMRAVYIAPLE 1400 (1665)
Q Consensus 1327 L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~-----~~~~~r~l~I~Ptr 1400 (1665)
|.+.+++.|.. ||..|||+|.++||.++.++| ++++||||||||++|++|+++++.... ....+++|||+||+
T Consensus 16 l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~D-vi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTr 94 (572)
T PRK04537 16 LHPALLAGLESAGFTRCTPIQALTLPVALPGGD-VAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTR 94 (572)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCC-EEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcH
Confidence 56677777776 899999999999999999776 999999999999999999999886521 11135999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchh---ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccC
Q 000324 1401 ALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1401 eLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~ 1477 (1665)
||+.|+++.+. .|+...++++..++|+...+.+ +...++|||+||++|..+++++. ...+..+++|||||||+++
T Consensus 95 eLa~Qi~~~~~-~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~-~~~l~~v~~lViDEAh~ll 172 (572)
T PRK04537 95 ELAIQIHKDAV-KFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHK-VVSLHACEICVLDEADRMF 172 (572)
T ss_pred HHHHHHHHHHH-HHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhcc-ccchhheeeeEecCHHHHh
Confidence 99999999998 7777788999999999876532 23456999999999998876532 2457889999999999998
Q ss_pred CCCchhHHHHHHHHHHHHhhcCC--CCeEEEEcccCCCh-HHHH-HHhcccCCcEEecCCCCCccceEEEEeecccchhh
Q 000324 1478 GQGGPVLEVIVSRMRYIASQVEN--KIRIVALSTSLANA-KDLG-EWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFE 1553 (1665)
Q Consensus 1478 ~~~g~~~e~~~srl~~i~~~~~~--~~riI~lSATl~n~-~dl~-~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~ 1553 (1665)
+.+ +...+..+...++. ..|+++||||+++. ..+. .++.. +..+..-........+...+. .....
T Consensus 173 d~g------f~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~-p~~i~v~~~~~~~~~i~q~~~---~~~~~ 242 (572)
T PRK04537 173 DLG------FIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNE-PEKLVVETETITAARVRQRIY---FPADE 242 (572)
T ss_pred hcc------hHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcC-CcEEEeccccccccceeEEEE---ecCHH
Confidence 755 55566666666664 68999999999873 2333 33332 212221111111111111111 11100
Q ss_pred HHHHhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhc
Q 000324 1554 ARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLR 1633 (1665)
Q Consensus 1554 ~~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~ 1633 (1665)
.. ...+..++.. ....++||||+|+..|+.++..|. ..+
T Consensus 243 ~k-----~~~L~~ll~~-~~~~k~LVF~nt~~~ae~l~~~L~-----------------------------------~~g 281 (572)
T PRK04537 243 EK-----QTLLLGLLSR-SEGARTMVFVNTKAFVERVARTLE-----------------------------------RHG 281 (572)
T ss_pred HH-----HHHHHHHHhc-ccCCcEEEEeCCHHHHHHHHHHHH-----------------------------------HcC
Confidence 00 1112222222 456789999999999999998773 235
Q ss_pred ccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1634 HGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1634 ~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
+.+.++||+|++.+|..+++.|++|+++||||
T Consensus 282 ~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVa 313 (572)
T PRK04537 282 YRVGVLSGDVPQKKRESLLNRFQKGQLEILVA 313 (572)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEE
Confidence 56999999999999999999999999999998
No 89
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.98 E-value=9.2e-31 Score=332.96 Aligned_cols=326 Identities=17% Similarity=0.159 Sum_probs=215.1
Q ss_pred hhHhhcCCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHH
Q 000324 485 WAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (1665)
Q Consensus 485 ~~~~~f~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~ 564 (1665)
++..+ .||+ |+|||.++++.++.+.++++++||||||||.++.++.+.. ... . ....++||++|||+||.
T Consensus 7 ff~~~-~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~--~-----~~~~rLv~~vPtReLa~ 76 (844)
T TIGR02621 7 WYQGL-HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIG--A-----KVPRRLVYVVNRRTVVD 76 (844)
T ss_pred HHHHH-hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-ccc--c-----cccceEEEeCchHHHHH
Confidence 34443 4887 9999999999999887778999999999998665444422 111 0 11236777899999999
Q ss_pred HHHHHHHHhhccC-----------------------CcEEEEEECCCcccHhhh---ccccEEEeChhhHHHHHhhcCC-
Q 000324 565 EVVGNLSNRLQMY-----------------------DVKVRELSGDQTLTRQQI---EETQIIVTTPEKWDIITRKSGD- 617 (1665)
Q Consensus 565 q~~~~~~~~~~~~-----------------------gi~V~~ltGd~~~~~~~~---~~~~IiV~TPekld~l~r~~~~- 617 (1665)
|+++.+.+..+.+ +++|..++|+.....+.. .+++|||+|++ .+.++...
T Consensus 77 Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D---~i~sr~L~~ 153 (844)
T TIGR02621 77 QVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVD---MIGSRLLFS 153 (844)
T ss_pred HHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHH---HHcCCcccc
Confidence 9999999877644 488999999988776543 46899999965 45443321
Q ss_pred ------------CccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCC-hHHHHHHHhccc
Q 000324 618 ------------RTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNL 684 (1665)
Q Consensus 618 ------------~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n-~~dv~~~l~~~~ 684 (1665)
...++++++||+|||| +...+...++.|+..+.+ .....+.|+++||||++. ..+....+..++
T Consensus 154 gYg~~~~~~pi~ag~L~~v~~LVLDEAD-Ld~gF~~~l~~Il~~l~r--p~~~rprQtLLFSAT~p~ei~~l~~~~~~~p 230 (844)
T TIGR02621 154 GYGCGFKSRPLHAGFLGQDALIVHDEAH-LEPAFQELLKQIMNEQQR--PPDFLPLRVVELTATSRTDGPDRTTLLSAED 230 (844)
T ss_pred ccccccccccchhhhhccceEEEEehhh-hccccHHHHHHHHHhccc--CcccccceEEEEecCCCccHHHHHHHHccCC
Confidence 1136889999999999 433566666666554210 011123799999999985 233333333222
Q ss_pred cCceEEecCCCccccceEEEEeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccc
Q 000324 685 EKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLG 764 (1665)
Q Consensus 685 ~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~ 764 (1665)
. .+.+.......+-..+++.... ..+...+...+.... ...++++||||||++.|..+++.|...+
T Consensus 231 ~--~i~V~~~~l~a~ki~q~v~v~~---e~Kl~~lv~~L~~ll--~e~g~~vLVF~NTv~~Aq~L~~~L~~~g------- 296 (844)
T TIGR02621 231 Y--KHPVLKKRLAAKKIVKLVPPSD---EKFLSTMVKELNLLM--KDSGGAILVFCRTVKHVRKVFAKLPKEK------- 296 (844)
T ss_pred c--eeecccccccccceEEEEecCh---HHHHHHHHHHHHHHH--hhCCCcEEEEECCHHHHHHHHHHHHhcC-------
Confidence 1 1111111111111122322221 111211111111111 1236789999999999999999887532
Q ss_pred cccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHH-----HHHHHHhC----CC-------CCeEEecc
Q 000324 765 RFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ-----LVEDLFGD----GH-------VQVLVSTA 828 (1665)
Q Consensus 765 ~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~-----~v~~~F~~----g~-------i~VLVaT~ 828 (1665)
+..+||+|++.+|. .+++.|++ |. .+|||||+
T Consensus 297 --------------------------------~~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATd 344 (844)
T TIGR02621 297 --------------------------------FELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTS 344 (844)
T ss_pred --------------------------------CeEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccc
Confidence 35679999999999 88999987 44 68999999
Q ss_pred ccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEE
Q 000324 829 TLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885 (1665)
Q Consensus 829 tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil 885 (1665)
++++|||++. .+||+ +.. +..+|+||+||+||.|....+.++++
T Consensus 345 VaerGLDId~-d~VI~----d~a--------P~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 345 AGEVGVNISA-DHLVC----DLA--------PFESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred hhhhcccCCc-ceEEE----CCC--------CHHHHHHHhcccCCCCCCCCceEEEE
Confidence 9999999998 56665 332 46799999999999884333333444
No 90
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.98 E-value=1.9e-30 Score=304.86 Aligned_cols=456 Identities=16% Similarity=0.182 Sum_probs=316.8
Q ss_pred HHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc-c
Q 000324 498 RVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-M 576 (1665)
Q Consensus 498 ~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~-~ 576 (1665)
..+.+.+. .+..++.++|.+.||||||+.....++..-.. ++..|.+..|+|..|..++++++..++ .
T Consensus 359 ~~R~~ll~-~ir~n~vvvivgETGSGKTTQl~QyL~edGY~----------~~GmIGcTQPRRvAAiSVAkrVa~EM~~~ 427 (1042)
T KOG0924|consen 359 ACRDQLLS-VIRENQVVVIVGETGSGKTTQLAQYLYEDGYA----------DNGMIGCTQPRRVAAISVAKRVAEEMGVT 427 (1042)
T ss_pred HHHHHHHH-HHhhCcEEEEEecCCCCchhhhHHHHHhcccc----------cCCeeeecCchHHHHHHHHHHHHHHhCCc
Confidence 34555554 45677889999999999999766555443221 234788999999999999999987654 3
Q ss_pred CCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhh
Q 000324 577 YDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIET 656 (1665)
Q Consensus 577 ~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~ 656 (1665)
+|-.|+.... +++-....+.|-++|.+ +|+|.......+.++++||+||||. |.-..+.++.- ++..-.
T Consensus 428 lG~~VGYsIR---FEdvT~~~T~IkymTDG---iLLrEsL~d~~L~kYSviImDEAHE----RslNtDilfGl-lk~~la 496 (1042)
T KOG0924|consen 428 LGDTVGYSIR---FEDVTSEDTKIKYMTDG---ILLRESLKDRDLDKYSVIIMDEAHE----RSLNTDILFGL-LKKVLA 496 (1042)
T ss_pred cccccceEEE---eeecCCCceeEEEeccc---hHHHHHhhhhhhhheeEEEechhhh----cccchHHHHHH-HHHHHH
Confidence 4544544332 22222246789999999 7888876667889999999999994 43334433332 233333
Q ss_pred ccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHHHHHHHHHHHHHHhCCCeE
Q 000324 657 TKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQV 736 (1665)
Q Consensus 657 ~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v 736 (1665)
...+.++|..|||+ |++.++.|++..| .|+.. .|..|+...|...+.. ....+...... .|......+.+
T Consensus 497 rRrdlKliVtSATm-~a~kf~nfFgn~p---~f~Ip--GRTyPV~~~~~k~p~e---DYVeaavkq~v-~Ihl~~~~Gdi 566 (1042)
T KOG0924|consen 497 RRRDLKLIVTSATM-DAQKFSNFFGNCP---QFTIP--GRTYPVEIMYTKTPVE---DYVEAAVKQAV-QIHLSGPPGDI 566 (1042)
T ss_pred hhccceEEEeeccc-cHHHHHHHhCCCc---eeeec--CCccceEEEeccCchH---HHHHHHHhhhe-EeeccCCCCCE
Confidence 46799999999998 8899999999655 44444 4555655544432221 11111111110 11222335789
Q ss_pred EEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHH
Q 000324 737 LIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLF 816 (1665)
Q Consensus 737 LVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F 816 (1665)
|||.+.+..++.++..+.......... ..-...|..+++.|+..-+..+++..
T Consensus 567 lIfmtGqediE~t~~~i~~~l~ql~~~---------------------------~~~~L~vlpiYSQLp~dlQ~kiFq~a 619 (1042)
T KOG0924|consen 567 LIFMTGQEDIECTCDIIKEKLEQLDSA---------------------------PTTDLAVLPIYSQLPADLQAKIFQKA 619 (1042)
T ss_pred EEecCCCcchhHHHHHHHHHHHhhhcC---------------------------CCCceEEEeehhhCchhhhhhhcccC
Confidence 999999999999998887765332211 00123477789999999999999999
Q ss_pred hCCCCCeEEeccccccccCCCceEEEEec----ccccCCCCC----CcccCCHHHHHhhhcccCCCCCCCceEEEEEeCC
Q 000324 817 GDGHVQVLVSTATLAWGVNLPAHTVIIKG----TQIYNPEKG----AWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (1665)
Q Consensus 817 ~~g~i~VLVaT~tla~GVdlP~v~vVI~~----t~~yd~~~g----~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (1665)
..|..+++|||++++.++.+|++.+||+- -.+|++..| ...++|.+...||.|||||.| .|.||.+++.
T Consensus 620 ~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~---pG~cYRlYTe 696 (1042)
T KOG0924|consen 620 EGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG---PGTCYRLYTE 696 (1042)
T ss_pred CCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC---Ccceeeehhh
Confidence 99999999999999999999999999983 467999887 458899999999999999986 8999999986
Q ss_pred CcHHHHHHhhcCCCccccchhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHH
Q 000324 889 SELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERR 968 (1665)
Q Consensus 889 ~~~~~y~~ll~~~~piES~l~~~l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~ 968 (1665)
.. |...++....| .-...+|...+.---++ .++|+.+| -| .+ .+.
T Consensus 697 ~a--y~~eml~stvP--EIqRTNl~nvVLlLksl----gV~dll~F---dF-------------------mD-----~Pp 741 (1042)
T KOG0924|consen 697 DA--YKNEMLPSTVP--EIQRTNLSNVVLLLKSL----GVDDLLKF---DF-------------------MD-----PPP 741 (1042)
T ss_pred hH--HHhhcccCCCc--hhhhcchhhHHHHHHhc----ChhhhhCC---Cc-------------------CC-----CCH
Confidence 33 33345555444 11112222222222222 23443332 11 11 112
Q ss_pred HHHHHHHHHHHhHcCCcccccCCCccccChHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHhcCCccCCCCcCChhH
Q 000324 969 ADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDE 1048 (1665)
Q Consensus 969 ~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~~s~s~Ef~~i~~R~~E 1048 (1665)
.+.+.+++..|.-.|+|... | .+|++|+-|+.|+++|...++++-+..-.|. .+||.|+|+-+- ..++.|+.|
T Consensus 742 ed~~~~sly~Lw~LGAl~~~---g--~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~-dEilsIvSmLSv-p~VF~rpke 814 (1042)
T KOG0924|consen 742 EDNLLNSLYQLWTLGALDNT---G--QLTPLGRKMVEFPLDPPLSKMLLMAARMGCS-DEILSIVSMLSV-PAVFYRPKE 814 (1042)
T ss_pred HHHHHHHHHHHHHhhccccC---C--ccchhhHHhhhCCCCchHHHHHHHHhccCcH-HHHHHHHHHhcc-cceeecccc
Confidence 36788999999999999754 3 8999999999999999999999987777765 788888887543 678889888
Q ss_pred HHHHHHHhc
Q 000324 1049 KMELAKLLD 1057 (1665)
Q Consensus 1049 ~~~l~~l~~ 1057 (1665)
+.+-..++.
T Consensus 815 r~eead~ar 823 (1042)
T KOG0924|consen 815 REEEADAAR 823 (1042)
T ss_pred chhhhhhHH
Confidence 887766553
No 91
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=3.2e-31 Score=299.06 Aligned_cols=334 Identities=21% Similarity=0.366 Sum_probs=253.4
Q ss_pred hhhHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHH
Q 000324 484 EWAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (1665)
Q Consensus 484 ~~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raL 562 (1665)
+.++..| .||++|+.||+.|+..++.+.+ +++.|++|+|||.+|.+++++.+... .....+++++|+++|
T Consensus 36 ~LLrgiy~yGFekPSaIQqraI~p~i~G~d-v~~qaqsgTgKt~af~i~iLq~iD~~--------~ke~qalilaPtreL 106 (397)
T KOG0327|consen 36 SLLRGIYAYGFEKPSAIQQRAILPCIKGHD-VIAQAQSGTGKTAAFLISILQQIDMS--------VKETQALILAPTREL 106 (397)
T ss_pred HHHhHHHhhccCCchHHHhccccccccCCc-eeEeeeccccchhhhHHHHHhhcCcc--------hHHHHHHHhcchHHH
Confidence 3445555 6999999999999999988854 99999999999999999999987432 234578999999999
Q ss_pred HHHHHHHHHHhhccCCcEEEEEECCCcccHh--hh--ccccEEEeChhhH-HHHHhhcCCCccccceeEEEEeccccccc
Q 000324 563 VAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QI--EETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (1665)
Q Consensus 563 a~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~--~~--~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~l~d 637 (1665)
|.|+...........+++|..++|+.....+ .+ ..++|+|+||++. +.+.+.. .....++++|+||++.+..
T Consensus 107 a~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~---l~~~~iKmfvlDEaDEmLs 183 (397)
T KOG0327|consen 107 AQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGS---LSTDGIKMFVLDEADEMLS 183 (397)
T ss_pred HHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhcccc---ccccceeEEeecchHhhhc
Confidence 9999988888888889999999998876533 23 3579999999995 5555542 4566799999999999876
Q ss_pred -CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCC-hHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHH
Q 000324 638 -NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQR 715 (1665)
Q Consensus 638 -~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n-~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~ 715 (1665)
++...+..+... .++++|++++|||+|. ..++.+-+..+|.. +..-.....---+.+.|+.+.... +
T Consensus 184 ~gfkdqI~~if~~-------lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~-i~vkk~~ltl~gikq~~i~v~k~~---k 252 (397)
T KOG0327|consen 184 RGFKDQIYDIFQE-------LPSDVQVVLLSATMPSDVLEVTKKFMREPVR-ILVKKDELTLEGIKQFYINVEKEE---K 252 (397)
T ss_pred cchHHHHHHHHHH-------cCcchhheeecccCcHHHHHHHHHhccCceE-EEecchhhhhhheeeeeeeccccc---c
Confidence 666666666554 4788999999999985 33444433333211 111111111112233333333222 2
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCC
Q 000324 716 FQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPY 795 (1665)
Q Consensus 716 ~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~ 795 (1665)
+..+.. +|+ .-.+.+|||||++.+..+...|...+ +
T Consensus 253 ~~~l~d-l~~------~~~q~~if~nt~r~v~~l~~~L~~~~-------------------------------------~ 288 (397)
T KOG0327|consen 253 LDTLCD-LYR------RVTQAVIFCNTRRKVDNLTDKLRAHG-------------------------------------F 288 (397)
T ss_pred ccHHHH-HHH------hhhcceEEecchhhHHHHHHHHhhCC-------------------------------------c
Confidence 222221 122 35689999999999999998885543 2
Q ss_pred cEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCC
Q 000324 796 GFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQ 875 (1665)
Q Consensus 796 gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g 875 (1665)
.+...|+.|.+.+|..+.+.|+.|..+|||.|+.+|+|+|+-.+..||+ |+.|. ...+|+||+||+||.|
T Consensus 289 ~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvin----ydlP~------~~~~yihR~gr~gr~g 358 (397)
T KOG0327|consen 289 TVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVN----YDLPA------RKENYIHRIGRAGRFG 358 (397)
T ss_pred eEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeee----ecccc------chhhhhhhcccccccC
Confidence 3566799999999999999999999999999999999999999999999 88886 6889999999999977
Q ss_pred CCCceEEEEEeCCCcHHHHHH
Q 000324 876 YDSYGEGIIITGHSELRYYLS 896 (1665)
Q Consensus 876 ~d~~G~~iil~~~~~~~~y~~ 896 (1665)
.+|.++.+++..+...+.+
T Consensus 359 --rkg~~in~v~~~d~~~lk~ 377 (397)
T KOG0327|consen 359 --RKGVAINFVTEEDVRDLKD 377 (397)
T ss_pred --CCceeeeeehHhhHHHHHh
Confidence 8999999999877666554
No 92
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.97 E-value=5.1e-30 Score=321.26 Aligned_cols=285 Identities=19% Similarity=0.272 Sum_probs=210.4
Q ss_pred cchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhc--CCCCeEEEEEcccHHHH
Q 000324 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS--ETGVMRAVYIAPLEALA 1403 (1665)
Q Consensus 1327 L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~--~~~~~r~l~I~PtreLa 1403 (1665)
|...+++.+.. ||..|+++|.+|++.++++++ ++++||||+|||+||++|+++++...+ ..+.+++||++||++|+
T Consensus 8 l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d-~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa 86 (434)
T PRK11192 8 LDESLLEALQDKGYTRPTAIQAEAIPPALDGRD-VLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELA 86 (434)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCC-EEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHH
Confidence 34455666655 899999999999999998766 999999999999999999999987532 12235999999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEeCCCccchh---ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCC
Q 000324 1404 KERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG 1480 (1665)
Q Consensus 1404 ~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~ 1480 (1665)
.|+++.+. .+....++++..++|+...... +..+++|+|+||+++..++.. ....+.++++||+||||++++++
T Consensus 87 ~Q~~~~~~-~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~--~~~~~~~v~~lViDEah~~l~~~ 163 (434)
T PRK11192 87 MQVADQAR-ELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKE--ENFDCRAVETLILDEADRMLDMG 163 (434)
T ss_pred HHHHHHHH-HHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc--CCcCcccCCEEEEECHHHHhCCC
Confidence 99999998 6777788999999999876532 335679999999999888765 34457899999999999998765
Q ss_pred chhHHHHHHHHHHHHhhcCCCCeEEEEcccCCC--hHHHHHHhcccCCcEEecCCCCCcc-ceEEEEeecccchhhHHHH
Q 000324 1481 GPVLEVIVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHGLFNFPPGVRPV-PLEIHIQGVDITNFEARMQ 1557 (1665)
Q Consensus 1481 g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n--~~dl~~wl~~~~~~~~~f~~~~rpv-~l~i~i~~~~~~~~~~~~~ 1557 (1665)
+...+..+...++...|+++||||++. ..+++.++...+.. +...+..+.. .+....... .....
T Consensus 164 ------~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~i~~~~~~~--~~~~~--- 231 (434)
T PRK11192 164 ------FAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVE-VEAEPSRRERKKIHQWYYRA--DDLEH--- 231 (434)
T ss_pred ------cHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEE-EEecCCcccccCceEEEEEe--CCHHH---
Confidence 334444555566778899999999975 45788887654332 2222222211 111111111 00000
Q ss_pred hcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEE
Q 000324 1558 AMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (1665)
Q Consensus 1558 ~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~ 1637 (1665)
....+..+... ....++||||+|+.+|+.++..|. ..+..+.
T Consensus 232 --k~~~l~~l~~~-~~~~~~lVF~~s~~~~~~l~~~L~-----------------------------------~~~~~~~ 273 (434)
T PRK11192 232 --KTALLCHLLKQ-PEVTRSIVFVRTRERVHELAGWLR-----------------------------------KAGINCC 273 (434)
T ss_pred --HHHHHHHHHhc-CCCCeEEEEeCChHHHHHHHHHHH-----------------------------------hCCCCEE
Confidence 01112222222 245789999999999999998773 1345689
Q ss_pred EEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1638 YLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1638 ~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
++||+|++.+|..+++.|++|+++||||
T Consensus 274 ~l~g~~~~~~R~~~l~~f~~G~~~vLVa 301 (434)
T PRK11192 274 YLEGEMVQAKRNEAIKRLTDGRVNVLVA 301 (434)
T ss_pred EecCCCCHHHHHHHHHHHhCCCCcEEEE
Confidence 9999999999999999999999999998
No 93
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.97 E-value=6.9e-30 Score=327.23 Aligned_cols=284 Identities=21% Similarity=0.275 Sum_probs=210.2
Q ss_pred ccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHH
Q 000324 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (1665)
Q Consensus 1326 ~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~ 1404 (1665)
.|++.+++++.. ||.+|+|+|.++++.++.+++ ++++||||||||+||.+|++..+..... .+++|||+||++||.
T Consensus 12 ~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~d-vl~~ApTGsGKT~af~lpll~~l~~~~~--~~~~LIL~PTreLa~ 88 (629)
T PRK11634 12 GLKAPILEALNDLGYEKPSPIQAECIPHLLNGRD-VLGMAQTGSGKTAAFSLPLLHNLDPELK--APQILVLAPTRELAV 88 (629)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCC-EEEEcCCCCcHHHHHHHHHHHHhhhccC--CCeEEEEeCcHHHHH
Confidence 366677888876 899999999999999998766 9999999999999999999998866322 349999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEeCCCccchh---ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCc
Q 000324 1405 ERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (1665)
Q Consensus 1405 Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g 1481 (1665)
|+++.+........++.+..++|+.+.+.+ +...++|||+||+++..++.+ ....+.++++||+||||.++..+
T Consensus 89 Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r--~~l~l~~l~~lVlDEAd~ml~~g- 165 (629)
T PRK11634 89 QVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKR--GTLDLSKLSGLVLDEADEMLRMG- 165 (629)
T ss_pred HHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHc--CCcchhhceEEEeccHHHHhhcc-
Confidence 999999843333357899999998776532 334679999999999888765 44568899999999999998766
Q ss_pred hhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh-HHHHHHhcccCCcEEecCCCCCcc-ceEEEEeecccchhhHHHHhc
Q 000324 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPV-PLEIHIQGVDITNFEARMQAM 1559 (1665)
Q Consensus 1482 ~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~-~dl~~wl~~~~~~~~~f~~~~rpv-~l~i~i~~~~~~~~~~~~~~~ 1559 (1665)
+...+..+...++...|+++||||+++. ..++..+...+..+ ......... .+....... ... .
T Consensus 166 -----f~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i-~i~~~~~~~~~i~q~~~~v--~~~-~----- 231 (629)
T PRK11634 166 -----FIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEV-RIQSSVTTRPDISQSYWTV--WGM-R----- 231 (629)
T ss_pred -----cHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEE-EccCccccCCceEEEEEEe--chh-h-----
Confidence 5566666777788899999999999874 34554443322222 111111111 111111100 000 0
Q ss_pred ChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEE
Q 000324 1560 TKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYL 1639 (1665)
Q Consensus 1560 ~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~ 1639 (1665)
....+..++.. ....++||||+|+..|..++..|. ..++.+..+
T Consensus 232 k~~~L~~~L~~-~~~~~~IVF~~tk~~a~~l~~~L~-----------------------------------~~g~~~~~l 275 (629)
T PRK11634 232 KNEALVRFLEA-EDFDAAIIFVRTKNATLEVAEALE-----------------------------------RNGYNSAAL 275 (629)
T ss_pred HHHHHHHHHHh-cCCCCEEEEeccHHHHHHHHHHHH-----------------------------------hCCCCEEEe
Confidence 01112222232 344679999999999999998772 245678999
Q ss_pred cCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1640 HEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1640 H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
||+|++.+|..+++.|++|+++||||
T Consensus 276 hgd~~q~~R~~il~~Fr~G~~~ILVA 301 (629)
T PRK11634 276 NGDMNQALREQTLERLKDGRLDILIA 301 (629)
T ss_pred eCCCCHHHHHHHHHHHhCCCCCEEEE
Confidence 99999999999999999999999998
No 94
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.97 E-value=2.3e-30 Score=316.78 Aligned_cols=304 Identities=17% Similarity=0.189 Sum_probs=196.6
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEECCCcccH-
Q 000324 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR- 592 (1665)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~- 592 (1665)
++|+||||||||.+|++++++.+... ...+++|++|+++|+.|+++++...++. .++.++|+.....
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~~---------~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~ 69 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKSQ---------KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRI 69 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhC---------CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHH
Confidence 79999999999999999999886543 2348999999999999999999997653 4555555432100
Q ss_pred --------------------hhhccccEEEeChhhHH-HHHhhcCC-Ccccc--ceeEEEEecccccccCCchHHHHHHH
Q 000324 593 --------------------QQIEETQIIVTTPEKWD-IITRKSGD-RTYTQ--LVKLLIIDEIHLLHDNRGPVLESIVA 648 (1665)
Q Consensus 593 --------------------~~~~~~~IiV~TPekld-~l~r~~~~-~~~l~--~v~liIiDEaH~l~d~rg~~le~iv~ 648 (1665)
.....++|+|+||+++. .+.+.... ...+. ..++|||||+|.+.+.....+..++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~ 149 (358)
T TIGR01587 70 KEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLE 149 (358)
T ss_pred hccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 01124689999999963 33331111 01111 23789999999997642222333333
Q ss_pred HHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccc-cceEEEEeeecCchhHHHHHHHHHHHHHH
Q 000324 649 RTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPV-PLSQQYIGIQVKKPLQRFQLMNDLCYEKV 727 (1665)
Q Consensus 649 r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv-~l~~~~~~~~~~~~~~~~~~~~~~~~~~i 727 (1665)
.+ . ..+.|+++||||+| +.+..|+........ .......+. ....+.+.............+.. .+
T Consensus 150 ~l----~--~~~~~~i~~SATlp--~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----l~ 216 (358)
T TIGR01587 150 VL----K--DNDVPILLMSATLP--KFLKEYAEKIGYVEF-NEPLDLKEERRFERHRFIKIESDKVGEISSLER----LL 216 (358)
T ss_pred HH----H--HcCCCEEEEecCch--HHHHHHHhcCCCccc-ccCCCCccccccccccceeeccccccCHHHHHH----HH
Confidence 32 2 34689999999998 456666643211100 000000000 01111111111111111111111 12
Q ss_pred HHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHH
Q 000324 728 VAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRG 807 (1665)
Q Consensus 728 ~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~ 807 (1665)
.....++++||||+|++.|+.++..|.+.+.. ..+..+||+|++.
T Consensus 217 ~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~-----------------------------------~~~~~~h~~~~~~ 261 (358)
T TIGR01587 217 EFIKKGGKIAIIVNTVDRAQEFYQQLKENAPE-----------------------------------EEIMLLHSRFTEK 261 (358)
T ss_pred HHhhCCCeEEEEECCHHHHHHHHHHHHhhcCC-----------------------------------CeEEEEECCCCHH
Confidence 22234689999999999999999999875421 2478889999999
Q ss_pred HHHHH----HHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCC--CceE
Q 000324 808 DRQLV----EDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD--SYGE 881 (1665)
Q Consensus 808 dR~~v----~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d--~~G~ 881 (1665)
+|..+ ++.|++|..+|||||+++++|||+| +.+||. |.. +..+|+||+||+||.|.. ..|.
T Consensus 262 ~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~----~~~--------~~~~~iqr~GR~gR~g~~~~~~~~ 328 (358)
T TIGR01587 262 DRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMIT----ELA--------PIDSLIQRLGRLHRYGRKNGENFE 328 (358)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEE----cCC--------CHHHHHHHhccccCCCCCCCCCCe
Confidence 99764 7889999999999999999999997 455565 332 567899999999998853 2357
Q ss_pred EEEEeCCCc
Q 000324 882 GIIITGHSE 890 (1665)
Q Consensus 882 ~iil~~~~~ 890 (1665)
.+++....+
T Consensus 329 ~~v~~~~~~ 337 (358)
T TIGR01587 329 VYIITIAPE 337 (358)
T ss_pred EEEEeecCC
Confidence 888876654
No 95
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.97 E-value=1e-29 Score=321.32 Aligned_cols=285 Identities=21% Similarity=0.285 Sum_probs=209.3
Q ss_pred ccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCC-----CCeEEEEEccc
Q 000324 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASET-----GVMRAVYIAPL 1399 (1665)
Q Consensus 1326 ~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~-----~~~r~l~I~Pt 1399 (1665)
.|.+.+.+.|.. ||.+|+|+|.+|++.+++|++ ++++||||||||+||++|++..+.+.+.. +.+++|||+||
T Consensus 93 ~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~d-vi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~Pt 171 (475)
T PRK01297 93 NLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHD-AIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPT 171 (475)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCC-EEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCc
Confidence 356677788877 899999999999999999766 99999999999999999999998764321 13599999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccch--hcc--CCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccc
Q 000324 1400 EALAKERYRDWEIKFGQGLGMRVVELTGETAMDL--KLL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHL 1475 (1665)
Q Consensus 1400 reLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~--~~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~ 1475 (1665)
+||+.|+++.++ .+....++++..++|+.+.+. +.+ ..++|+|+||++|..+..+| ...+.++++|||||||+
T Consensus 172 reLa~Q~~~~~~-~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~--~~~l~~l~~lViDEah~ 248 (475)
T PRK01297 172 RELVVQIAKDAA-ALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRG--EVHLDMVEVMVLDEADR 248 (475)
T ss_pred HHHHHHHHHHHH-HhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcC--CcccccCceEEechHHH
Confidence 999999999998 666677899999999876542 222 35799999999998887764 45688999999999999
Q ss_pred cCCCCchhHHHHHHHHHHHHhhcCC--CCeEEEEcccCCC-hHHHHHHhcccCCcEEecCCCCC-ccceEEEEeecccch
Q 000324 1476 IGGQGGPVLEVIVSRMRYIASQVEN--KIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVR-PVPLEIHIQGVDITN 1551 (1665)
Q Consensus 1476 l~~~~g~~~e~~~srl~~i~~~~~~--~~riI~lSATl~n-~~dl~~wl~~~~~~~~~f~~~~r-pv~l~i~i~~~~~~~ 1551 (1665)
+.+.+ +..+++.+..+++. ..|++++|||+++ ...++.++...+ ..+.+.+... ...+..++.......
T Consensus 249 l~~~~------~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~ 321 (475)
T PRK01297 249 MLDMG------FIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDP-AIVEIEPENVASDTVEQHVYAVAGSD 321 (475)
T ss_pred HHhcc------cHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCC-EEEEeccCcCCCCcccEEEEEecchh
Confidence 98765 55666666666643 5799999999875 345555443322 2222222111 111222222111110
Q ss_pred hhHHHHhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHH
Q 000324 1552 FEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKAT 1631 (1665)
Q Consensus 1552 ~~~~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~ 1631 (1665)
. ......++.. ....++||||+++++|+.++..|. .
T Consensus 322 k--------~~~l~~ll~~-~~~~~~IVF~~s~~~~~~l~~~L~-----------------------------------~ 357 (475)
T PRK01297 322 K--------YKLLYNLVTQ-NPWERVMVFANRKDEVRRIEERLV-----------------------------------K 357 (475)
T ss_pred H--------HHHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHH-----------------------------------H
Confidence 0 0111122222 344689999999999999997772 2
Q ss_pred hcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1632 LRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1632 l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
.+..+..+||+|++.+|..+++.|++|+++||||
T Consensus 358 ~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLva 391 (475)
T PRK01297 358 DGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVA 391 (475)
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEE
Confidence 3456889999999999999999999999999998
No 96
>PTZ00424 helicase 45; Provisional
Probab=99.97 E-value=1.1e-29 Score=316.00 Aligned_cols=285 Identities=17% Similarity=0.265 Sum_probs=204.4
Q ss_pred ccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHH
Q 000324 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (1665)
Q Consensus 1326 ~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~ 1404 (1665)
.+.+.++++++. ||..|+|+|.+|++.++++.+ ++++||||||||++|++|++..+...... .++|||+|+++|+.
T Consensus 34 ~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d-~ii~apTGsGKT~~~~l~~l~~~~~~~~~--~~~lil~Pt~~L~~ 110 (401)
T PTZ00424 34 KLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYD-TIGQAQSGTGKTATFVIAALQLIDYDLNA--CQALILAPTRELAQ 110 (401)
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCC-EEEECCCCChHHHHHHHHHHHHhcCCCCC--ceEEEECCCHHHHH
Confidence 466778888888 899999999999999999776 89999999999999999999988653233 38999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEeCCCccch---hccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCc
Q 000324 1405 ERYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (1665)
Q Consensus 1405 Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g 1481 (1665)
|+.+.+. .++...++.+..+.|+..... .....++|+|+||+++..++++ ....+.++++||+||||++.+.+
T Consensus 111 Q~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~--~~~~l~~i~lvViDEah~~~~~~- 186 (401)
T PTZ00424 111 QIQKVVL-ALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDK--RHLRVDDLKLFILDEADEMLSRG- 186 (401)
T ss_pred HHHHHHH-HHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHh--CCcccccccEEEEecHHHHHhcc-
Confidence 9999888 566666788888888865432 2334569999999999887765 34568899999999999997644
Q ss_pred hhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh-HHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcC
Q 000324 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT 1560 (1665)
Q Consensus 1482 ~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~-~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~ 1560 (1665)
+...+..+..+++...|++++|||+++. .++.......+..+...........+........... ..
T Consensus 187 -----~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 254 (401)
T PTZ00424 187 -----FKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEE-------WK 254 (401)
T ss_pred -----hHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHH-------HH
Confidence 2233344455667889999999999873 2333332222222211111111111111111111000 00
Q ss_pred hhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEc
Q 000324 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640 (1665)
Q Consensus 1561 k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H 1640 (1665)
......+... ....++||||+|+++|+.++..|. ..+.++..+|
T Consensus 255 ~~~l~~~~~~-~~~~~~ivF~~t~~~~~~l~~~l~-----------------------------------~~~~~~~~~h 298 (401)
T PTZ00424 255 FDTLCDLYET-LTITQAIIYCNTRRKVDYLTKKMH-----------------------------------ERDFTVSCMH 298 (401)
T ss_pred HHHHHHHHHh-cCCCeEEEEecCcHHHHHHHHHHH-----------------------------------HCCCcEEEEe
Confidence 1112222222 345679999999999999997762 2356799999
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1641 EGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1641 ~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
|+|++.+|..+++.|++|+++||||
T Consensus 299 ~~~~~~~R~~i~~~f~~g~~~vLva 323 (401)
T PTZ00424 299 GDMDQKDRDLIMREFRSGSTRVLIT 323 (401)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEE
Confidence 9999999999999999999999998
No 97
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2.7e-31 Score=299.43 Aligned_cols=337 Identities=19% Similarity=0.289 Sum_probs=260.2
Q ss_pred hHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHH
Q 000324 486 AQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (1665)
Q Consensus 486 ~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~ 564 (1665)
++..+ .||+.++|||++.+|.++.+.+ ++..|-||||||.+|++|+++.+..+. ..+.+++++.|+++||.
T Consensus 33 ~raI~kkg~~~ptpiqRKTipliLe~~d-vv~martgsgktaaf~ipm~e~Lk~~s-------~~g~RalilsptreLa~ 104 (529)
T KOG0337|consen 33 LRAIHKKGFNTPTPIQRKTIPLILEGRD-VVGMARTGSGKTAAFLIPMIEKLKSHS-------QTGLRALILSPTRELAL 104 (529)
T ss_pred HHHHHHhhcCCCCchhcccccceeeccc-cceeeecCCcchhhHHHHHHHHHhhcc-------ccccceeeccCcHHHHH
Confidence 34444 7899999999999999998866 999999999999999999999998764 23679999999999999
Q ss_pred HHHHHHHHhhccCCcEEEEEECCCcccHhhh---ccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc-CCc
Q 000324 565 EVVGNLSNRLQMYDVKVRELSGDQTLTRQQI---EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRG 640 (1665)
Q Consensus 565 q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~~---~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg 640 (1665)
|..+.++...+..++++..++|+.++.++.. .+++||++||+++..+.-... ..++.|.+||+||++.|.. ++.
T Consensus 105 qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~--l~l~sveyVVfdEadrlfemgfq 182 (529)
T KOG0337|consen 105 QTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMT--LTLSSVEYVVFDEADRLFEMGFQ 182 (529)
T ss_pred HHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhee--ccccceeeeeehhhhHHHhhhhH
Confidence 9999999988888899999999888887643 479999999998754443333 4578899999999999987 577
Q ss_pred hHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEE-ecCCCccc-cceEEEEeeecCchhHHHHH
Q 000324 641 PVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY-FDNSYRPV-PLSQQYIGIQVKKPLQRFQL 718 (1665)
Q Consensus 641 ~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~-f~~~~rpv-~l~~~~~~~~~~~~~~~~~~ 718 (1665)
+.+..+++|+ +...|.++||||+|+ ++..|.+.....++.+ .+.+-+-. .++..+..+. + ..+..+
T Consensus 183 eql~e~l~rl-------~~~~QTllfSatlp~--~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~--~-a~K~aa 250 (529)
T KOG0337|consen 183 EQLHEILSRL-------PESRQTLLFSATLPR--DLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVR--K-AEKEAA 250 (529)
T ss_pred HHHHHHHHhC-------CCcceEEEEeccCch--hhHHHHHccCCCCceEEeehhhhcchhhhhheeeec--c-HHHHHH
Confidence 8888888775 566799999999994 6777776654333222 11111111 1122222221 1 122222
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEE
Q 000324 719 MNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFA 798 (1665)
Q Consensus 719 ~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~ 798 (1665)
+..+ +.......+++|||.|+..++.+...|...+.. +.
T Consensus 251 Ll~i----l~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~-------------------------------------~s 289 (529)
T KOG0337|consen 251 LLSI----LGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGE-------------------------------------GS 289 (529)
T ss_pred HHHH----HhccccccceeEEecccchHHHHHHHHHhcCCC-------------------------------------cc
Confidence 2211 222233568999999999999988888776533 34
Q ss_pred EecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCC
Q 000324 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDS 878 (1665)
Q Consensus 799 ~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~ 878 (1665)
..+|.|.+..|..-...|..++..+||.|+++++|+|+|-..-||+ ||.+. +..-|+||+||+.|.| .
T Consensus 290 ~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvin----yd~p~------~~klFvhRVgr~arag--r 357 (529)
T KOG0337|consen 290 DIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVIN----YDFPP------DDKLFVHRVGRVARAG--R 357 (529)
T ss_pred ccccccChHhhhhccccccCCccceEEEehhhhccCCCcccccccc----ccCCC------CCceEEEEecchhhcc--c
Confidence 4589999999999999999999999999999999999999999999 66543 3345999999999988 8
Q ss_pred ceEEEEEeCCCcHHHHHHh
Q 000324 879 YGEGIIITGHSELRYYLSL 897 (1665)
Q Consensus 879 ~G~~iil~~~~~~~~y~~l 897 (1665)
.|.+|-++.+.+..|...+
T Consensus 358 tg~aYs~V~~~~~~yl~DL 376 (529)
T KOG0337|consen 358 TGRAYSLVASTDDPYLLDL 376 (529)
T ss_pred cceEEEEEecccchhhhhh
Confidence 8999999999998887664
No 98
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.97 E-value=3.9e-29 Score=291.19 Aligned_cols=341 Identities=22% Similarity=0.347 Sum_probs=237.9
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
++.-+++.+|...+..++.+ |.|++.|||-|||.+|++.|...+... ++ ++|+++|||-|+.|.++.+
T Consensus 11 p~~ie~R~YQ~~i~a~al~~--NtLvvlPTGLGKT~IA~~V~~~~l~~~---------~~-kvlfLAPTKPLV~Qh~~~~ 78 (542)
T COG1111 11 PNTIEPRLYQLNIAAKALFK--NTLVVLPTGLGKTFIAAMVIANRLRWF---------GG-KVLFLAPTKPLVLQHAEFC 78 (542)
T ss_pred cccccHHHHHHHHHHHHhhc--CeEEEecCCccHHHHHHHHHHHHHHhc---------CC-eEEEecCCchHHHHHHHHH
Confidence 34557889999999988876 899999999999999999999888764 23 8999999999999999999
Q ss_pred HHhhccCCcEEEEEECCCcccHh--hhccccEEEeChhhH-HHHHhhcCCCccccceeEEEEecccccccCCchHHHHHH
Q 000324 571 SNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIV 647 (1665)
Q Consensus 571 ~~~~~~~gi~V~~ltGd~~~~~~--~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv 647 (1665)
.+.++-..-.++.+||....+.+ .+...+|+|+||... ..+... +..+.++.|+||||||+-..+. .|-.+.
T Consensus 79 ~~v~~ip~~~i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~G---rid~~dv~~lifDEAHRAvGny--AYv~Va 153 (542)
T COG1111 79 RKVTGIPEDEIAALTGEVRPEEREELWAKKKVFVATPQVVENDLKAG---RIDLDDVSLLIFDEAHRAVGNY--AYVFVA 153 (542)
T ss_pred HHHhCCChhheeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcC---ccChHHceEEEechhhhccCcc--hHHHHH
Confidence 99876445578999999987754 467899999999975 233222 2467889999999999865332 233333
Q ss_pred HHHHHHHhhccCCeeEEEEcccCCC----hHHHHHHHhccccCceEEe---cCCCcccc--ceEEEEeeecC--------
Q 000324 648 ARTVRQIETTKEHIRLVGLSATLPN----YEDVALFLRVNLEKGLFYF---DNSYRPVP--LSQQYIGIQVK-------- 710 (1665)
Q Consensus 648 ~r~~~~~~~~~~~~riV~lSATl~n----~~dv~~~l~~~~~~~~~~f---~~~~rpv~--l~~~~~~~~~~-------- 710 (1665)
.... ....+++++|||||..+ ..+|.+-|+... +.+- +.+.+|.- ....++.++..
T Consensus 154 ~~y~----~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~---vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~ 226 (542)
T COG1111 154 KEYL----RSAKNPLILGLTASPGSDLEKIQEVVENLGIEK---VEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRD 226 (542)
T ss_pred HHHH----HhccCceEEEEecCCCCCHHHHHHHHHhCCcce---EEEecCCCccHHHhhccceeEEEeccCcHHHHHHHH
Confidence 3332 24678899999999765 233444444321 1111 11122110 11111100000
Q ss_pred ----------------------c---------------------hhHHHHHHH------------H--------HH----
Q 000324 711 ----------------------K---------------------PLQRFQLMN------------D--------LC---- 723 (1665)
Q Consensus 711 ----------------------~---------------------~~~~~~~~~------------~--------~~---- 723 (1665)
. ....+..|. + ..
T Consensus 227 ~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl 306 (542)
T COG1111 227 LLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYL 306 (542)
T ss_pred HHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Confidence 0 000000000 0 00
Q ss_pred -----------------------------------------------HHHHHHHh---CCCeEEEEecChhHHHHHHHHH
Q 000324 724 -----------------------------------------------YEKVVAVA---GKHQVLIFVHSRKETAKTARAI 753 (1665)
Q Consensus 724 -----------------------------------------------~~~i~~~~---~~~~vLVFv~sr~~~~~~a~~L 753 (1665)
.+.+.+.. ++.++|||++-|..++.++..|
T Consensus 307 ~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L 386 (542)
T COG1111 307 EKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFL 386 (542)
T ss_pred HHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHH
Confidence 00111111 2458999999999999999999
Q ss_pred HHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccc
Q 000324 754 RDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWG 833 (1665)
Q Consensus 754 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~G 833 (1665)
...+.... ..|+.. +-.-+..||++.++..+++.|+.|..+|||||++.+.|
T Consensus 387 ~~~~~~~~--~rFiGQ--------------------------a~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEG 438 (542)
T COG1111 387 KKIGIKAR--VRFIGQ--------------------------ASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEG 438 (542)
T ss_pred HhcCCcce--eEEeec--------------------------cccccccccCHHHHHHHHHHHhcCCceEEEEccccccc
Confidence 98876543 234321 11123489999999999999999999999999999999
Q ss_pred cCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCC--cHHHHHH
Q 000324 834 VNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS--ELRYYLS 896 (1665)
Q Consensus 834 VdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~--~~~~y~~ 896 (1665)
+|+|++++||. |+|-. |..-++||.||+||. +.|.++++.+.. +..||.+
T Consensus 439 LDIp~vDlVif----YEpvp------SeIR~IQR~GRTGR~---r~Grv~vLvt~gtrdeayy~~ 490 (542)
T COG1111 439 LDIPEVDLVIF----YEPVP------SEIRSIQRKGRTGRK---RKGRVVVLVTEGTRDEAYYYS 490 (542)
T ss_pred CCCCcccEEEE----ecCCc------HHHHHHHhhCccccC---CCCeEEEEEecCchHHHHHHH
Confidence 99999999998 99876 888999999999994 789999999886 4555553
No 99
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.97 E-value=8.6e-30 Score=341.38 Aligned_cols=294 Identities=21% Similarity=0.341 Sum_probs=207.5
Q ss_pred EECCCCChHHHHHHHHHHHHHHhhc--------CCCCeEEEEEcccHHHHHHHHHHHHHHh----------cC-CCCcEE
Q 000324 1362 VAAPTGSGKTICSEFAILRNHQKAS--------ETGVMRAVYIAPLEALAKERYRDWEIKF----------GQ-GLGMRV 1422 (1665)
Q Consensus 1362 v~ApTGSGKTl~a~l~il~~l~~~~--------~~~~~r~l~I~PtreLa~Q~~~~~~~~~----------~~-~~~i~v 1422 (1665)
|+||||||||+||+||++..+.... ...++++|||+|++||+.|++++++..+ +. ..+++|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5899999999999999999887532 1124599999999999999999987422 22 257899
Q ss_pred EEEeCCCccchh--cc-CCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCC-CchhHHHHHHHHHHHHhhc
Q 000324 1423 VELTGETAMDLK--LL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEVIVSRMRYIASQV 1498 (1665)
Q Consensus 1423 ~~l~G~~~~~~~--~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~-~g~~~e~~~srl~~i~~~~ 1498 (1665)
..++|+++.+.+ .+ +.+||||+|||+|..++.+ +.+..+++|++|||||+|.+.+. +|..++..++|+..+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLts-k~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~--- 156 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTS-RARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALL--- 156 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhh-hhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhC---
Confidence 999999988753 33 4679999999999988764 34567999999999999999874 6999999999998873
Q ss_pred CCCCeEEEEcccCCChHHHHHHhcccCC-cEEecCCCCCccceEEEEeecccchhh------------HHHHhcChhHHH
Q 000324 1499 ENKIRIVALSTSLANAKDLGEWIGATSH-GLFNFPPGVRPVPLEIHIQGVDITNFE------------ARMQAMTKPTFT 1565 (1665)
Q Consensus 1499 ~~~~riI~lSATl~n~~dl~~wl~~~~~-~~~~f~~~~rpv~l~i~i~~~~~~~~~------------~~~~~~~k~~~~ 1565 (1665)
+.+.|+|+||||++|.+++++|++.... .+++ .+..++.++.+.+...+..... .+...+......
T Consensus 157 ~~~~QrIgLSATI~n~eevA~~L~g~~pv~Iv~-~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~ 235 (1490)
T PRK09751 157 HTSAQRIGLSATVRSASDVAAFLGGDRPVTVVN-PPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIET 235 (1490)
T ss_pred CCCCeEEEEEeeCCCHHHHHHHhcCCCCEEEEC-CCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHH
Confidence 5689999999999999999999987533 3443 5666777776655332211110 011111222233
Q ss_pred HHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHh---cccEEEEcCC
Q 000324 1566 AIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL---RHGVGYLHEG 1642 (1665)
Q Consensus 1566 ~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l---~~gI~~~H~~ 1642 (1665)
.++..+..++++|||||||+.|+.++..|.......... . ..............+....... ...+.+|||+
T Consensus 236 ~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGs 310 (1490)
T PRK09751 236 GILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQR-S----PSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGS 310 (1490)
T ss_pred HHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccc-c----ccccchhhhhhhccccchhccccccceeeeecccc
Confidence 445544567889999999999999999996533210000 0 0000000011111111111111 2347899999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEC
Q 000324 1643 LNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1643 m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
|++++|..+++.|++|+++||||
T Consensus 311 LSkeeR~~IE~~fK~G~LrvLVA 333 (1490)
T PRK09751 311 VSKEQRAITEQALKSGELRCVVA 333 (1490)
T ss_pred CCHHHHHHHHHHHHhCCceEEEe
Confidence 99999999999999999999998
No 100
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=5e-30 Score=283.97 Aligned_cols=284 Identities=18% Similarity=0.234 Sum_probs=214.9
Q ss_pred cccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHH
Q 000324 1325 TALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403 (1665)
Q Consensus 1325 ~~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa 1403 (1665)
-+|.+.+.+.+.. |+..|||+|+.|+|.++.|+| ++.||.||||||.+|.+|+++.|...+.+. -++|+.|||||+
T Consensus 12 LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrd-cig~AkTGsGKT~AFaLPil~rLsedP~gi--FalvlTPTrELA 88 (442)
T KOG0340|consen 12 LGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRD-CIGCAKTGSGKTAAFALPILNRLSEDPYGI--FALVLTPTRELA 88 (442)
T ss_pred cCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccc-cccccccCCCcchhhhHHHHHhhccCCCcc--eEEEecchHHHH
Confidence 3444455555555 899999999999999999988 999999999999999999999999965544 899999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEeCCCccc---hhccCCCcEEEEChhhHHHHHHhhhc--cccCCCccEEEeecccccCC
Q 000324 1404 KERYRDWEIKFGQGLGMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRWKQ--RKYVQQVSLFIIDELHLIGG 1478 (1665)
Q Consensus 1404 ~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~~~--~~~l~~v~llViDEaH~l~~ 1478 (1665)
.|+.+.|. .+++.+++++..+.|+++.- ..+.+++|+||+|||++..+++.... ...+++++++|+||||.+++
T Consensus 89 ~QiaEQF~-alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~ 167 (442)
T KOG0340|consen 89 LQIAEQFI-ALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLA 167 (442)
T ss_pred HHHHHHHH-HhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhc
Confidence 99999999 88999999999999997653 45667899999999999988875311 23578999999999999987
Q ss_pred CCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCChHHHHHHhcccCCc--EEecCC-CCCccceEEEEeecccchhhHH
Q 000324 1479 QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHG--LFNFPP-GVRPVPLEIHIQGVDITNFEAR 1555 (1665)
Q Consensus 1479 ~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~~dl~~wl~~~~~~--~~~f~~-~~rpv~l~i~i~~~~~~~~~~~ 1555 (1665)
.. +-..+.-+.+.+|.+.|.++||||+.+. +....++.... .|.+.. ..-+++-... +.
T Consensus 168 ~~------f~d~L~~i~e~lP~~RQtLlfSATitd~--i~ql~~~~i~k~~a~~~e~~~~vstvetL~----------q~ 229 (442)
T KOG0340|consen 168 GC------FPDILEGIEECLPKPRQTLLFSATITDT--IKQLFGCPITKSIAFELEVIDGVSTVETLY----------QG 229 (442)
T ss_pred cc------hhhHHhhhhccCCCccceEEEEeehhhH--HHHhhcCCcccccceEEeccCCCCchhhhh----------hh
Confidence 65 5555666667778889999999999775 33344443221 222111 0111111111 11
Q ss_pred HHhcC---hhH--HHHHHHHh-cCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHH
Q 000324 1556 MQAMT---KPT--FTAIVQHA-KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLK 1629 (1665)
Q Consensus 1556 ~~~~~---k~~--~~~i~~~l-~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~ 1629 (1665)
+.... +.+ +..+...- ...+.++|||++.+.|+.++.-|
T Consensus 230 yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l----------------------------------- 274 (442)
T KOG0340|consen 230 YILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTL----------------------------------- 274 (442)
T ss_pred eeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHH-----------------------------------
Confidence 11111 111 22222221 13677999999999999999777
Q ss_pred HHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1630 ATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1630 ~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
+.+...++.+||.|++++|...+.+|+++.++||||
T Consensus 275 ~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~ilia 310 (442)
T KOG0340|consen 275 KNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIA 310 (442)
T ss_pred hhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEE
Confidence 446778999999999999999999999999999998
No 101
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=3.2e-30 Score=276.43 Aligned_cols=287 Identities=17% Similarity=0.316 Sum_probs=225.6
Q ss_pred CCCCcccccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEc
Q 000324 1319 LQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397 (1665)
Q Consensus 1319 l~p~~~~~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~ 1397 (1665)
.+.+...+|++++++.+|. ||..|+.||+.|++.++.|++ |+++|..|+|||.+|.+.+++.+.-..... +++++.
T Consensus 26 ~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrd-ViaQaqSGTGKTa~~si~vlq~~d~~~r~t--Q~lils 102 (400)
T KOG0328|consen 26 IPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRD-VIAQAQSGTGKTATFSISVLQSLDISVRET--QALILS 102 (400)
T ss_pred ccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccc-eEEEecCCCCceEEEEeeeeeeccccccee--eEEEec
Confidence 3444556889999999999 999999999999999999888 999999999999999999998777644444 899999
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCcc--chhccC-CCcEEEEChhhHHHHHHhhhccccCCCccEEEeeccc
Q 000324 1398 PLEALAKERYRDWEIKFGQGLGMRVVELTGETAM--DLKLLE-KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH 1474 (1665)
Q Consensus 1398 PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~--~~~~l~-~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH 1474 (1665)
|||||+.|+.+... .++..+++++-.+.|+.+. |.+.+. +.|++.+||+++.+++++ .......++++|+||+|
T Consensus 103 PTRELa~Qi~~vi~-alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr--~~L~tr~vkmlVLDEaD 179 (400)
T KOG0328|consen 103 PTRELAVQIQKVIL-ALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKR--RSLRTRAVKMLVLDEAD 179 (400)
T ss_pred ChHHHHHHHHHHHH-HhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHh--ccccccceeEEEeccHH
Confidence 99999999999998 7898999999999998774 344444 449999999999999987 55567899999999999
Q ss_pred ccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh-HHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhh
Q 000324 1475 LIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFE 1553 (1665)
Q Consensus 1475 ~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~-~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~ 1553 (1665)
.+++.+ +-..+-.+.+.+++..|++++|||+|.. .++.+.+... |+.+-+.-...+.....
T Consensus 180 emL~kg------fk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtd------------pvrilvkrdeltlEgIK 241 (400)
T KOG0328|consen 180 EMLNKG------FKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTD------------PVRILVKRDELTLEGIK 241 (400)
T ss_pred HHHHhh------HHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCC------------ceeEEEecCCCchhhhh
Confidence 988765 6677777778889999999999999863 3444444332 33333333333333334
Q ss_pred HHHHhcChhH--HHHHH---HHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHH
Q 000324 1554 ARMQAMTKPT--FTAIV---QHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEML 1628 (1665)
Q Consensus 1554 ~~~~~~~k~~--~~~i~---~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L 1628 (1665)
+.+....+.. +..++ .. ..-.+++|||||++.+.++...+.
T Consensus 242 qf~v~ve~EewKfdtLcdLYd~-LtItQavIFcnTk~kVdwLtekm~--------------------------------- 287 (400)
T KOG0328|consen 242 QFFVAVEKEEWKFDTLCDLYDT-LTITQAVIFCNTKRKVDWLTEKMR--------------------------------- 287 (400)
T ss_pred hheeeechhhhhHhHHHHHhhh-hehheEEEEecccchhhHHHHHHH---------------------------------
Confidence 4443333322 22232 33 234579999999999999998773
Q ss_pred HHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1629 KATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1629 ~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
...+.|..+||+|++++|..++..|++|+.+||||
T Consensus 288 --~~nftVssmHGDm~qkERd~im~dFRsg~SrvLit 322 (400)
T KOG0328|consen 288 --EANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLIT 322 (400)
T ss_pred --hhCceeeeccCCcchhHHHHHHHHhhcCCceEEEE
Confidence 24456999999999999999999999999999997
No 102
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.97 E-value=3.5e-29 Score=288.85 Aligned_cols=315 Identities=23% Similarity=0.282 Sum_probs=229.8
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCCCCCcccccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCC
Q 000324 1290 WLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGS 1368 (1665)
Q Consensus 1290 wl~~e~~~~vs~~~l~lp~~~~~~t~ll~l~p~~~~~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGS 1368 (1665)
|-.......+++.+-.+|.+-... .-+.++.+.+..+.. ||..|+|||.+|+|..++.+| +|..|.|||
T Consensus 224 wri~redynis~kg~~lpnplrnw---------EE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD-~igvaETgs 293 (673)
T KOG0333|consen 224 WRIFREDYNISIKGGRLPNPLRNW---------EESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRD-PIGVAETGS 293 (673)
T ss_pred ceeeecceeeeecCCCCCccccCh---------hhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCC-eeeEEeccC
Confidence 545555566777777777643322 223344556665555 899999999999999888666 999999999
Q ss_pred hHHHHHHHHHHHHHHhhcC-------CCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchh---ccCC
Q 000324 1369 GKTICSEFAILRNHQKASE-------TGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEK 1438 (1665)
Q Consensus 1369 GKTl~a~l~il~~l~~~~~-------~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~---~l~~ 1438 (1665)
|||++|.+|++..+...++ ..+|++++++|||+|+.|+..+-. +|++.+|++++.+.|+.+.+.+ +-.+
T Consensus 294 Gktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~-kf~~~lg~r~vsvigg~s~EEq~fqls~g 372 (673)
T KOG0333|consen 294 GKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETN-KFGKPLGIRTVSVIGGLSFEEQGFQLSMG 372 (673)
T ss_pred CccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHH-HhcccccceEEEEecccchhhhhhhhhcc
Confidence 9999999999998877542 235799999999999999999998 8999999999999999998744 5568
Q ss_pred CcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCC-chhHHHHHHHHHHHH------------------hhcC
Q 000324 1439 GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIA------------------SQVE 1499 (1665)
Q Consensus 1439 ~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~-g~~~e~~~srl~~i~------------------~~~~ 1499 (1665)
|+|+||||++|.+.+.+ ....+..+.+||+|||+.+.+++ -+.+..+++.|-... ....
T Consensus 373 ceiviatPgrLid~Len--r~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k 450 (673)
T KOG0333|consen 373 CEIVIATPGRLIDSLEN--RYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSK 450 (673)
T ss_pred ceeeecCchHHHHHHHH--HHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhccccc
Confidence 89999999999887765 44567899999999999998866 444444554442110 0000
Q ss_pred CCCeEEEEcccCCCh-HHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcC----hhHHHHHHHHhcCC
Q 000324 1500 NKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT----KPTFTAIVQHAKNE 1574 (1665)
Q Consensus 1500 ~~~riI~lSATl~n~-~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~----k~~~~~i~~~l~~~ 1574 (1665)
.-.|.++||||++.+ ..++.-+-. +|+-+.+...+-+.+...+....|. ...+..++.. ...
T Consensus 451 ~yrqT~mftatm~p~verlar~ylr------------~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~-~~~ 517 (673)
T KOG0333|consen 451 KYRQTVMFTATMPPAVERLARSYLR------------RPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILES-NFD 517 (673)
T ss_pred ceeEEEEEecCCChHHHHHHHHHhh------------CCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHh-CCC
Confidence 127899999999984 345544322 2222222222222222222222221 1122233333 346
Q ss_pred CCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHH
Q 000324 1575 KPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSAL 1654 (1665)
Q Consensus 1575 ~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~ 1654 (1665)
.|+|||||+++.|..+|..| +..++.+..+||+-++++|..+++.
T Consensus 518 ppiIIFvN~kk~~d~lAk~L-----------------------------------eK~g~~~~tlHg~k~qeQRe~aL~~ 562 (673)
T KOG0333|consen 518 PPIIIFVNTKKGADALAKIL-----------------------------------EKAGYKVTTLHGGKSQEQRENALAD 562 (673)
T ss_pred CCEEEEEechhhHHHHHHHH-----------------------------------hhccceEEEeeCCccHHHHHHHHHH
Confidence 78999999999999999888 5577889999999999999999999
Q ss_pred HhcCCceEEEC
Q 000324 1655 FEAGKIKICYR 1665 (1665)
Q Consensus 1655 F~~G~i~VLVC 1665 (1665)
|++|..+||||
T Consensus 563 fr~~t~dIlVa 573 (673)
T KOG0333|consen 563 FREGTGDILVA 573 (673)
T ss_pred HHhcCCCEEEE
Confidence 99999999998
No 103
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.96 E-value=1.9e-28 Score=309.97 Aligned_cols=310 Identities=15% Similarity=0.163 Sum_probs=204.4
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000324 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (1665)
..|+++|.++++.++.++ +.+++||||+|||.++...+...+.. ...+++|++||++|+.|+.++|.++
T Consensus 113 ~~~r~~Q~~av~~~l~~~-~~il~apTGsGKT~i~~~l~~~~~~~----------~~~~vLilvpt~eL~~Q~~~~l~~~ 181 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNN-RRLLNLPTSAGKSLIQYLLSRYYLEN----------YEGKVLIIVPTTSLVTQMIDDFVDY 181 (501)
T ss_pred CCCCHHHHHHHHHHHhcC-ceEEEeCCCCCHHHHHHHHHHHHHhc----------CCCeEEEEECcHHHHHHHHHHHHHh
Confidence 489999999999988764 58999999999999875433222222 1338999999999999999999986
Q ss_pred hccCCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHH
Q 000324 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ 653 (1665)
Q Consensus 574 ~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~ 653 (1665)
+......+..+.|+.... ...+|+|+||+++. +... .+++.+++||+||||++.+ ..++.++..+
T Consensus 182 ~~~~~~~~~~i~~g~~~~----~~~~I~VaT~qsl~---~~~~--~~~~~~~~iIvDEaH~~~~---~~~~~il~~~--- 246 (501)
T PHA02558 182 RLFPREAMHKIYSGTAKD----TDAPIVVSTWQSAV---KQPK--EWFDQFGMVIVDECHLFTG---KSLTSIITKL--- 246 (501)
T ss_pred ccccccceeEEecCcccC----CCCCEEEeeHHHHh---hchh--hhccccCEEEEEchhcccc---hhHHHHHHhh---
Confidence 543334454555554332 35789999999752 2221 3567899999999999864 3355444432
Q ss_pred HhhccCCeeEEEEcccCCChHH----HHHHHhccccCceEEecC-----CCccccceEEEEe--eecC--------chhH
Q 000324 654 IETTKEHIRLVGLSATLPNYED----VALFLRVNLEKGLFYFDN-----SYRPVPLSQQYIG--IQVK--------KPLQ 714 (1665)
Q Consensus 654 ~~~~~~~~riV~lSATl~n~~d----v~~~l~~~~~~~~~~f~~-----~~rpv~l~~~~~~--~~~~--------~~~~ 714 (1665)
+...+++|||||+++... +..+++.. ...... ....+++....+. ++.. ....
T Consensus 247 ----~~~~~~lGLTATp~~~~~~~~~~~~~fG~i----~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 318 (501)
T PHA02558 247 ----DNCKFKFGLTGSLRDGKANILQYVGLFGDI----FKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQE 318 (501)
T ss_pred ----hccceEEEEeccCCCccccHHHHHHhhCCc----eEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHH
Confidence 345678999999865221 11122210 000000 0000111111110 0000 0000
Q ss_pred HH------HHHHHHHHHHHHHHh-CCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccc
Q 000324 715 RF------QLMNDLCYEKVVAVA-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSN 787 (1665)
Q Consensus 715 ~~------~~~~~~~~~~i~~~~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 787 (1665)
.+ ..-+..+...+.... .+++++|||.+.+++..+++.|...+.
T Consensus 319 ~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~----------------------------- 369 (501)
T PHA02558 319 EIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYD----------------------------- 369 (501)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCC-----------------------------
Confidence 00 011122222222222 356889999999999999988876432
Q ss_pred hhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEec-cccccccCCCceEEEEecccccCCCCCCcccCCHHHHHh
Q 000324 788 DLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVST-ATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQ 866 (1665)
Q Consensus 788 ~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT-~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Q 866 (1665)
.+.++||+|+..+|..+++.|++|...||||| +++++|+|+|.+++||. +.|.+ |...|+|
T Consensus 370 --------~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl----~~p~~------s~~~~~Q 431 (501)
T PHA02558 370 --------KVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIF----AHPSK------SKIIVLQ 431 (501)
T ss_pred --------CEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEE----ecCCc------chhhhhh
Confidence 36778999999999999999999999999998 89999999999999998 77776 7788999
Q ss_pred hhcccCCCCCCCceEEEEE
Q 000324 867 MLGRAGRPQYDSYGEGIII 885 (1665)
Q Consensus 867 r~GRAGR~g~d~~G~~iil 885 (1665)
|+||++|++.+ ...|+++
T Consensus 432 riGR~~R~~~~-K~~~~i~ 449 (501)
T PHA02558 432 SIGRVLRKHGS-KSIATVW 449 (501)
T ss_pred hhhccccCCCC-CceEEEE
Confidence 99999998733 3345554
No 104
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.96 E-value=1e-28 Score=286.89 Aligned_cols=282 Identities=24% Similarity=0.380 Sum_probs=223.3
Q ss_pred HHHHHhc--CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHH
Q 000324 1331 LYEALYQ--GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYR 1408 (1665)
Q Consensus 1331 ~~~~l~~--~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~ 1408 (1665)
.++.++. |+..+.|+|+-|+.+-+-.++|.+|+++|+||||++.++|=+..+.. .++ +.||++|..+||+|.+.
T Consensus 204 ~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~--~g~--KmlfLvPLVALANQKy~ 279 (830)
T COG1202 204 KFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS--GGK--KMLFLVPLVALANQKYE 279 (830)
T ss_pred HHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh--CCC--eEEEEehhHHhhcchHH
Confidence 3455544 79999999999999966556779999999999999999999988877 244 89999999999999999
Q ss_pred HHHHHhcCCCCcEEEEEeCCCccc-------hhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCC-CC
Q 000324 1409 DWEIKFGQGLGMRVVELTGETAMD-------LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QG 1480 (1665)
Q Consensus 1409 ~~~~~~~~~~~i~v~~l~G~~~~~-------~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~-~~ 1480 (1665)
+|+.++++ +|+++..-.|-.-.. ...-..+||||+|.|-++.++|.. ..+.+|+.|||||+|++.+ .+
T Consensus 280 dF~~rYs~-LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg---~~lgdiGtVVIDEiHtL~deER 355 (830)
T COG1202 280 DFKERYSK-LGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG---KDLGDIGTVVIDEIHTLEDEER 355 (830)
T ss_pred HHHHHhhc-ccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC---CcccccceEEeeeeeeccchhc
Confidence 99999965 577777766643222 112346799999999999999863 6789999999999999987 77
Q ss_pred chhHHHHHHHHHHHHhhcCCCCeEEEEcccCCChHHHHHHhcccCCcEEecCCCCCccceEEEEeeccc-chhhHHHHhc
Q 000324 1481 GPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDI-TNFEARMQAM 1559 (1665)
Q Consensus 1481 g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~-~~~~~~~~~~ 1559 (1665)
|+.+.-++.|++++. +..|+|+||||+.|+.++|..+|... +....||||++-|+.-... .........+
T Consensus 356 G~RLdGLI~RLr~l~----~~AQ~i~LSATVgNp~elA~~l~a~l-----V~y~~RPVplErHlvf~~~e~eK~~ii~~L 426 (830)
T COG1202 356 GPRLDGLIGRLRYLF----PGAQFIYLSATVGNPEELAKKLGAKL-----VLYDERPVPLERHLVFARNESEKWDIIARL 426 (830)
T ss_pred ccchhhHHHHHHHhC----CCCeEEEEEeecCChHHHHHHhCCee-----EeecCCCCChhHeeeeecCchHHHHHHHHH
Confidence 999999999999884 48999999999999999999999864 3345699999988753321 1111222222
Q ss_pred ChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEE
Q 000324 1560 TKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYL 1639 (1665)
Q Consensus 1560 ~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~ 1639 (1665)
.+..+...... .-.+++|||++||+.|..+|..|. .-+..+..|
T Consensus 427 ~k~E~~~~ssk-g~rGQtIVFT~SRrr~h~lA~~L~-----------------------------------~kG~~a~pY 470 (830)
T COG1202 427 VKREFSTESSK-GYRGQTIVFTYSRRRCHELADALT-----------------------------------GKGLKAAPY 470 (830)
T ss_pred HHHHHhhhhcc-CcCCceEEEecchhhHHHHHHHhh-----------------------------------cCCcccccc
Confidence 23223222222 335789999999999999997772 124567899
Q ss_pred cCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1640 HEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1640 H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
|+||+..+|+.|+..|.+|.+.++|.
T Consensus 471 HaGL~y~eRk~vE~~F~~q~l~~VVT 496 (830)
T COG1202 471 HAGLPYKERKSVERAFAAQELAAVVT 496 (830)
T ss_pred cCCCcHHHHHHHHHHHhcCCcceEee
Confidence 99999999999999999999999873
No 105
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=1.9e-28 Score=280.45 Aligned_cols=287 Identities=19% Similarity=0.269 Sum_probs=213.3
Q ss_pred cchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcC---CCCeEEEEEcccHHH
Q 000324 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE---TGVMRAVYIAPLEAL 1402 (1665)
Q Consensus 1327 L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~---~~~~r~l~I~PtreL 1402 (1665)
|.+.+.+.+-. ||.++||+|..++|.++.+.| |++.||||||||+||++|++..+..... .+.+-+|||+|||||
T Consensus 13 L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KD-VvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTREL 91 (567)
T KOG0345|consen 13 LSPWLLEALDESGFEKMTPVQAATIPLLLKNKD-VVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTREL 91 (567)
T ss_pred ccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCc-eEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHH
Confidence 45567777766 899999999999999999777 9999999999999999999999954322 223569999999999
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEeCCCccchh----ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCC
Q 000324 1403 AKERYRDWEIKFGQGLGMRVVELTGETAMDLK----LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (1665)
Q Consensus 1403 a~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~----~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~ 1478 (1665)
+.|+.++.........++++.++.||.+.+.. .-++++|+||||||+.+++++-.....+.++.++|+||||++++
T Consensus 92 a~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLld 171 (567)
T KOG0345|consen 92 ARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLD 171 (567)
T ss_pred HHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhc
Confidence 99999999955455578899999999766522 23567899999999999998854455677999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCChH-HHHHHhcccCCcEEecCCCCCccceEEEEeeccc-ch-hhHH
Q 000324 1479 QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAK-DLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDI-TN-FEAR 1555 (1665)
Q Consensus 1479 ~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~~-dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~-~~-~~~~ 1555 (1665)
.+ |...++.|.+.+|+..|+=+||||..... +++.. |.. +|+.+.+....... +. ....
T Consensus 172 mg------Fe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~ra-GLR-----------Npv~V~V~~k~~~~tPS~L~~~ 233 (567)
T KOG0345|consen 172 MG------FEASVNTILSFLPKQRRTGLFSATQTQEVEDLARA-GLR-----------NPVRVSVKEKSKSATPSSLALE 233 (567)
T ss_pred cc------HHHHHHHHHHhcccccccccccchhhHHHHHHHHh-hcc-----------CceeeeecccccccCchhhcce
Confidence 98 99999999999999999999999987643 44432 222 23333322222100 00 0000
Q ss_pred -HHhcChhHHHHHHHHh--cCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHh
Q 000324 1556 -MQAMTKPTFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL 1632 (1665)
Q Consensus 1556 -~~~~~k~~~~~i~~~l--~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l 1632 (1665)
+..-....+..+...+ ...+++|||.+|...++..+..+..+ ..
T Consensus 234 Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~---------------------------------l~ 280 (567)
T KOG0345|consen 234 YLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRL---------------------------------LK 280 (567)
T ss_pred eeEecHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHH---------------------------------hC
Confidence 0000111122222222 34578999999999888877666321 13
Q ss_pred cccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1633 RHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1633 ~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
...+..+||.|++..|..+++.|++-.-.||+|
T Consensus 281 ~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~ 313 (567)
T KOG0345|consen 281 KREIFSIHGKMSQKARAKVLEAFRKLSNGVLFC 313 (567)
T ss_pred CCcEEEecchhcchhHHHHHHHHHhccCceEEe
Confidence 456899999999999999999999988889988
No 106
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=7.5e-30 Score=277.69 Aligned_cols=279 Identities=18% Similarity=0.283 Sum_probs=215.4
Q ss_pred cccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHH
Q 000324 1325 TALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403 (1665)
Q Consensus 1325 ~~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa 1403 (1665)
.-|+.+++..+|. ||..|+|+|.+++|..+.|+| +++.|..|+|||.+|.+|+|..+... ....++++++||||||
T Consensus 90 ~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrd-iLaRaKNGTGKT~a~~IP~Lekid~~--~~~IQ~~ilVPtrelA 166 (459)
T KOG0326|consen 90 YCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRD-ILARAKNGTGKTAAYCIPVLEKIDPK--KNVIQAIILVPTRELA 166 (459)
T ss_pred hhhhHHHHHHHHHhccCCCCCccccccceeecchh-hhhhccCCCCCccceechhhhhcCcc--ccceeEEEEeecchhh
Confidence 4567889999998 899999999999999999887 99999999999999999999998873 3345999999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEeCCCccch---hccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCC-
Q 000324 1404 KERYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ- 1479 (1665)
Q Consensus 1404 ~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~- 1479 (1665)
.|+.+.++ .+++.+|++|...+|+++... ++....|++|+||+++.++..+ .-..++++..+|+||||.+++.
T Consensus 167 LQtSqvc~-~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~K--gVa~ls~c~~lV~DEADKlLs~~ 243 (459)
T KOG0326|consen 167 LQTSQVCK-ELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKK--GVADLSDCVILVMDEADKLLSVD 243 (459)
T ss_pred HHHHHHHH-HHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhc--ccccchhceEEEechhhhhhchh
Confidence 99999888 889999999999999998763 3445569999999999999876 5556889999999999999874
Q ss_pred CchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh-HHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHh
Q 000324 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQA 1558 (1665)
Q Consensus 1480 ~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~-~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~ 1558 (1665)
+++.++. +...+|+..|++++|||+|.. ..+....-.. ....|.-....+ ....+.+..
T Consensus 244 F~~~~e~-------li~~lP~~rQillySATFP~tVk~Fm~~~l~k-Py~INLM~eLtl------------~GvtQyYaf 303 (459)
T KOG0326|consen 244 FQPIVEK-------LISFLPKERQILLYSATFPLTVKGFMDRHLKK-PYEINLMEELTL------------KGVTQYYAF 303 (459)
T ss_pred hhhHHHH-------HHHhCCccceeeEEecccchhHHHHHHHhccC-cceeehhhhhhh------------cchhhheee
Confidence 4444444 445679999999999999974 2332222111 112221111111 111111111
Q ss_pred cC----hhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcc
Q 000324 1559 MT----KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRH 1634 (1665)
Q Consensus 1559 ~~----k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~ 1634 (1665)
+. -..+..+... ..-.++||||||...++.+|..+ ..+++
T Consensus 304 V~e~qKvhCLntLfsk-LqINQsIIFCNS~~rVELLAkKI-----------------------------------TelGy 347 (459)
T KOG0326|consen 304 VEERQKVHCLNTLFSK-LQINQSIIFCNSTNRVELLAKKI-----------------------------------TELGY 347 (459)
T ss_pred echhhhhhhHHHHHHH-hcccceEEEeccchHhHHHHHHH-----------------------------------Hhccc
Confidence 11 1122333333 34467999999999999999887 34788
Q ss_pred cEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1635 GVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1635 gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
.+-|+|+.|-+++|..|.+.|++|+.+.|||
T Consensus 348 scyyiHakM~Q~hRNrVFHdFr~G~crnLVc 378 (459)
T KOG0326|consen 348 SCYYIHAKMAQEHRNRVFHDFRNGKCRNLVC 378 (459)
T ss_pred hhhHHHHHHHHhhhhhhhhhhhccccceeee
Confidence 8999999999999999999999999999999
No 107
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.96 E-value=1.7e-28 Score=283.29 Aligned_cols=291 Identities=19% Similarity=0.194 Sum_probs=228.7
Q ss_pred cchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhc--CCCCeEEEEEcccHHHH
Q 000324 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS--ETGVMRAVYIAPLEALA 1403 (1665)
Q Consensus 1327 L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~--~~~~~r~l~I~PtreLa 1403 (1665)
|....+.++.. ||.++|++|..+++.++.|.| +++.|.||||||++|++|++..+...+ +..+..+|||+||||||
T Consensus 89 LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkD-vl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA 167 (543)
T KOG0342|consen 89 LSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKD-VLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELA 167 (543)
T ss_pred cCHHHHHHHHhcCccchhHHHHhhcCccCCCcc-ceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHH
Confidence 44455666666 999999999999999999886 999999999999999999999988753 23345899999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEeCCCccc---hhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCC
Q 000324 1404 KERYRDWEIKFGQGLGMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG 1480 (1665)
Q Consensus 1404 ~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~ 1480 (1665)
.|++.+.++.+....++.+..+.||.... .++...++|+|||||+|.+++.+... ....+++++|+||||++++.+
T Consensus 168 ~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~-f~~r~~k~lvlDEADrlLd~G 246 (543)
T KOG0342|consen 168 MQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSG-FLFRNLKCLVLDEADRLLDIG 246 (543)
T ss_pred HHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCc-chhhccceeEeecchhhhhcc
Confidence 99999999665544489999999998765 33555779999999999999987554 456788999999999999888
Q ss_pred chhHHHHHHHHHHHHhhcCCCCeEEEEcccCCC-hHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhc
Q 000324 1481 GPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAM 1559 (1665)
Q Consensus 1481 g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n-~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~ 1559 (1665)
|-..|..|...++...|.++||||.+. .++++.-.-.......+......+...+---+++-......++
T Consensus 247 ------F~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f--- 317 (543)
T KOG0342|consen 247 ------FEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRF--- 317 (543)
T ss_pred ------cHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchH---
Confidence 788888888999999999999999987 5677766544444455555555444443333333222222221
Q ss_pred ChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEE
Q 000324 1560 TKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYL 1639 (1665)
Q Consensus 1560 ~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~ 1639 (1665)
...+..+.++ ....++||||+|...+..+|..| ..+...|--+
T Consensus 318 -~ll~~~LKk~-~~~~KiiVF~sT~~~vk~~~~lL-----------------------------------~~~dlpv~ei 360 (543)
T KOG0342|consen 318 -SLLYTFLKKN-IKRYKIIVFFSTCMSVKFHAELL-----------------------------------NYIDLPVLEI 360 (543)
T ss_pred -HHHHHHHHHh-cCCceEEEEechhhHHHHHHHHH-----------------------------------hhcCCchhhh
Confidence 1233444444 33478999999999999999666 3456678899
Q ss_pred cCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1640 HEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1640 H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
||++++..|..+...|++-+--||||
T Consensus 361 Hgk~~Q~kRT~~~~~F~kaesgIL~c 386 (543)
T KOG0342|consen 361 HGKQKQNKRTSTFFEFCKAESGILVC 386 (543)
T ss_pred hcCCcccccchHHHHHhhcccceEEe
Confidence 99999999999999999999999999
No 108
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.96 E-value=1.1e-27 Score=303.38 Aligned_cols=428 Identities=17% Similarity=0.176 Sum_probs=291.1
Q ss_pred HHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc-cCC
Q 000324 500 QSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYD 578 (1665)
Q Consensus 500 Q~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~-~~g 578 (1665)
+.+.+-.+++.+.+++|+|.||||||+.....||....... ...+|++..|+|--|..+++++..... ..|
T Consensus 177 ~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~--------~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g 248 (924)
T KOG0920|consen 177 MRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG--------AACNIICTQPRRISAISVAERVAKERGESLG 248 (924)
T ss_pred HHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC--------CCCeEEecCCchHHHHHHHHHHHHHhccccC
Confidence 34445456788899999999999999999999998876542 356899999999999999999886543 345
Q ss_pred cEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhcc
Q 000324 579 VKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTK 658 (1665)
Q Consensus 579 i~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~ 658 (1665)
-.|+.-.+-.+ +...++.+.+||.+ +++|+......+..+.+||+||+|.-+-+ ...+-.++..++ ...
T Consensus 249 ~~VGYqvrl~~---~~s~~t~L~fcTtG---vLLr~L~~~~~l~~vthiivDEVHER~i~-~DflLi~lk~lL----~~~ 317 (924)
T KOG0920|consen 249 EEVGYQVRLES---KRSRETRLLFCTTG---VLLRRLQSDPTLSGVTHIIVDEVHERSIN-TDFLLILLKDLL----PRN 317 (924)
T ss_pred CeeeEEEeeec---ccCCceeEEEecHH---HHHHHhccCcccccCceeeeeeEEEccCC-cccHHHHHHHHh----hhC
Confidence 45554443322 22235899999999 77777766788999999999999965431 112333333332 245
Q ss_pred CCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEe-------e----------ecCc----------
Q 000324 659 EHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIG-------I----------QVKK---------- 711 (1665)
Q Consensus 659 ~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~-------~----------~~~~---------- 711 (1665)
++.++|+||||+ |.+.+..|++..+ ++... .|..|+..+|.. + .+..
T Consensus 318 p~LkvILMSAT~-dae~fs~YF~~~p---vi~i~--grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (924)
T KOG0920|consen 318 PDLKVILMSATL-DAELFSDYFGGCP---VITIP--GRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLW 391 (924)
T ss_pred CCceEEEeeeec-chHHHHHHhCCCc---eEeec--CCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhc
Confidence 899999999999 6889999998554 22222 222232222210 0 0000
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhh
Q 000324 712 PLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (1665)
Q Consensus 712 ~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 791 (1665)
.......+...+...+.+....+.+|||.++-.++..+...|.......+.
T Consensus 392 ~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~----------------------------- 442 (924)
T KOG0920|consen 392 EPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADS----------------------------- 442 (924)
T ss_pred cccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccc-----------------------------
Confidence 000001111112222323333689999999999999999888764432221
Q ss_pred hcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEec----ccccCCCCC----CcccCCHHH
Q 000324 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKG----TQIYNPEKG----AWTELSPLD 863 (1665)
Q Consensus 792 ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~----t~~yd~~~g----~~~~~s~~~ 863 (1665)
..+-+...|+.|+..+++.|+.....|..+|++||++++.+|.+|++.+||+. -..||+..+ ..+|+|.+.
T Consensus 443 -~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAn 521 (924)
T KOG0920|consen 443 -LKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKAN 521 (924)
T ss_pred -cceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccc
Confidence 11235677999999999999999999999999999999999999999999985 456888765 347899999
Q ss_pred HHhhhcccCCCCCCCceEEEEEeCCCcHHHHHHhhcCCCccccchhHhhHHHHHHHHHhcc-ccChHHHHHHHHhhHHHH
Q 000324 864 IMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGT-VQNAKEACNWIGYTYLYI 942 (1665)
Q Consensus 864 ~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~piES~l~~~l~d~lnaeI~~g~-i~~~~~~~~wl~~t~~~~ 942 (1665)
..||.|||||. ..|.||-+++... |.+++. ..++.+.++..|- |+++.. +-...+...+|+
T Consensus 522 a~QR~GRAGRv---~~G~cy~L~~~~~---~~~~~~-----~~q~PEilR~pL~-~l~L~iK~l~~~~~~~fLs------ 583 (924)
T KOG0920|consen 522 AKQRRGRAGRV---RPGICYHLYTRSR---YEKLML-----AYQLPEILRTPLE-ELCLHIKVLEQGSIKAFLS------ 583 (924)
T ss_pred hHHhcccccCc---cCCeeEEeechhh---hhhccc-----ccCChHHHhChHH-HhhheeeeccCCCHHHHHH------
Confidence 99999999998 4899999998654 333322 2333333333222 233221 223333334443
Q ss_pred HhhcCCcccCCCccccccchhHHHHHHHHHHHHHHHHhHcCCcccccCCCccccChHHHHHHHhcCCHHHHHHHHHhcCC
Q 000324 943 RMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKP 1022 (1665)
Q Consensus 943 r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~ 1022 (1665)
+++..| ..+-|..|+..|.+.|.+..++ .+|+||+.+|.+++++.-.++..-..-.
T Consensus 584 kaldpP-------------------~~~~v~~a~~~L~~igaL~~~e-----~LT~LG~~la~lPvd~~igK~ll~g~if 639 (924)
T KOG0920|consen 584 KALDPP-------------------PADAVDLAIERLKQIGALDESE-----ELTPLGLHLASLPVDVRIGKLLLFGAIF 639 (924)
T ss_pred HhcCCC-------------------ChHHHHHHHHHHHHhccccCcc-----cchHHHHHHHhCCCccccchhheehhhc
Confidence 222222 1246889999999999998664 8999999999999999988887644333
Q ss_pred CC
Q 000324 1023 TM 1024 (1665)
Q Consensus 1023 ~~ 1024 (1665)
.|
T Consensus 640 ~c 641 (924)
T KOG0920|consen 640 GC 641 (924)
T ss_pred cc
Confidence 33
No 109
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.96 E-value=2.4e-28 Score=274.56 Aligned_cols=330 Identities=18% Similarity=0.300 Sum_probs=234.8
Q ss_pred hHhhcCCCCC-CCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHH
Q 000324 486 AQPAFKGMTQ-LNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (1665)
Q Consensus 486 ~~~~f~g~~~-l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~ 564 (1665)
+.+.| |+.+ =++.|.+++..+..++.+|.||+|||+||++||.||.|-. +..+|++.|..||+.
T Consensus 11 LKK~F-Gh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~--------------~gITIV~SPLiALIk 75 (641)
T KOG0352|consen 11 LKKLF-GHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH--------------GGITIVISPLIALIK 75 (641)
T ss_pred HHHHh-CchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh--------------CCeEEEehHHHHHHH
Confidence 44555 4543 3689999999999999999999999999999999998854 226899999999999
Q ss_pred HHHHHHHHhhccCCcEEEEEECCCcccHh---------hhccccEEEeChhhH-----HHHHhhcCCCccccceeEEEEe
Q 000324 565 EVVGNLSNRLQMYDVKVRELSGDQTLTRQ---------QIEETQIIVTTPEKW-----DIITRKSGDRTYTQLVKLLIID 630 (1665)
Q Consensus 565 q~~~~~~~~~~~~gi~V~~ltGd~~~~~~---------~~~~~~IiV~TPekl-----d~l~r~~~~~~~l~~v~liIiD 630 (1665)
.+.+.+.++ .+.+..+.+..+.... ...+..+++-|||.. .-++... ..-+.++++|+|
T Consensus 76 DQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L---~~r~~L~Y~vVD 148 (641)
T KOG0352|consen 76 DQIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGL---ANRDVLRYIVVD 148 (641)
T ss_pred HHHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHH---hhhceeeeEEec
Confidence 999998763 3445445443332211 123567999999973 2222222 233457899999
Q ss_pred ccccccc---CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCC--hHHHHHHHhccccCceEEe-cCCCccccceEEE
Q 000324 631 EIHLLHD---NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYF-DNSYRPVPLSQQY 704 (1665)
Q Consensus 631 EaH~l~d---~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n--~~dv~~~l~~~~~~~~~~f-~~~~rpv~l~~~~ 704 (1665)
|||++.. ++.|.+-.+-+ +.+..+++..|+|+||... -+|+..-|+.. +++-.| .+.||..- |
T Consensus 149 EAHCVSQWGHDFRPDYL~LG~-----LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~--~PVAiFkTP~FR~NL----F 217 (641)
T KOG0352|consen 149 EAHCVSQWGHDFRPDYLTLGS-----LRSVCPGVPWVALTATANAKVQEDIAFQLKLR--NPVAIFKTPTFRDNL----F 217 (641)
T ss_pred hhhhHhhhccccCcchhhhhh-----HHhhCCCCceEEeecccChhHHHHHHHHHhhc--CcHHhccCcchhhhh----h
Confidence 9999965 46676654332 2345678999999999754 46777777654 333333 23444311 1
Q ss_pred EeeecCch-hHHHHHHHHHHHHHHHH-----HhC---CCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHH
Q 000324 705 IGIQVKKP-LQRFQLMNDLCYEKVVA-----VAG---KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSRE 775 (1665)
Q Consensus 705 ~~~~~~~~-~~~~~~~~~~~~~~i~~-----~~~---~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~ 775 (1665)
+.+..++. ..-+..+.+.+...+-. ..+ .+..||||.||.+|+++|-.|...++..
T Consensus 218 YD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A--------------- 282 (641)
T KOG0352|consen 218 YDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPA--------------- 282 (641)
T ss_pred HHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcch---------------
Confidence 11111111 01122222222221110 001 4578999999999999999887766433
Q ss_pred HHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCC
Q 000324 776 ILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGA 855 (1665)
Q Consensus 776 ~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~ 855 (1665)
-.+|+||-..+|.+|.+.+.+|++.||+||..+++|||-|+|++||+ ||++.
T Consensus 283 ----------------------~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViH----W~~~q-- 334 (641)
T KOG0352|consen 283 ----------------------MAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIH----WSPSQ-- 334 (641)
T ss_pred ----------------------HHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEe----cCchh--
Confidence 23599999999999999999999999999999999999999999999 99987
Q ss_pred cccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcHHHHHHh
Q 000324 856 WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSL 897 (1665)
Q Consensus 856 ~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~l 897 (1665)
++.-|.|..|||||.| ....|-++++.++.....-+
T Consensus 335 ----n~AgYYQESGRAGRDG--k~SyCRLYYsR~D~~~i~FL 370 (641)
T KOG0352|consen 335 ----NLAGYYQESGRAGRDG--KRSYCRLYYSRQDKNALNFL 370 (641)
T ss_pred ----hhHHHHHhccccccCC--CccceeeeecccchHHHHHH
Confidence 8999999999999998 77889999998887665433
No 110
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=1.8e-27 Score=299.58 Aligned_cols=271 Identities=21% Similarity=0.339 Sum_probs=197.1
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHH
Q 000324 1332 YEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (1665)
Q Consensus 1332 ~~~l~~~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~ 1411 (1665)
++..| ||..|+|+|.++++.++.+++ ++++||||||||+||++|++. ..+ .+|||+|+++|+.|++..+.
T Consensus 3 l~~~~-g~~~~r~~Q~~ai~~~l~g~d-vlv~apTGsGKTl~y~lp~l~------~~~--~~lVi~P~~~L~~dq~~~l~ 72 (470)
T TIGR00614 3 LKTVF-GLSSFRPVQLEVINAVLLGRD-CFVVMPTGGGKSLCYQLPALC------SDG--ITLVISPLISLMEDQVLQLK 72 (470)
T ss_pred hHhhc-CCCCCCHHHHHHHHHHHcCCC-EEEEcCCCCcHhHHHHHHHHH------cCC--cEEEEecHHHHHHHHHHHHH
Confidence 34444 599999999999999999875 999999999999999999983 233 79999999999999999887
Q ss_pred HHhcCCCCcEEEEEeCCCccchh-----c--cCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhH
Q 000324 1412 IKFGQGLGMRVVELTGETAMDLK-----L--LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVL 1484 (1665)
Q Consensus 1412 ~~~~~~~~i~v~~l~G~~~~~~~-----~--l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~ 1484 (1665)
. .|+.+..++|+...+.. . ....+|+++||+++....+.+.......++++|||||||++++ +|..+
T Consensus 73 -~----~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~-~g~~f 146 (470)
T TIGR00614 73 -A----SGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQ-WGHDF 146 (470)
T ss_pred -H----cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCc-ccccc
Confidence 3 36788888887665411 1 1246899999999864322211111467899999999999975 45566
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEcccCCCh--HHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcChh
Q 000324 1485 EVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKP 1562 (1665)
Q Consensus 1485 e~~~srl~~i~~~~~~~~riI~lSATl~n~--~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~ 1562 (1665)
+..+.++..+...+ ++.++++||||+++. .++..+++.....++..+. .+| .+...+...... ....
T Consensus 147 r~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~-~r~-nl~~~v~~~~~~--------~~~~ 215 (470)
T TIGR00614 147 RPDYKALGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTSF-DRP-NLYYEVRRKTPK--------ILED 215 (470)
T ss_pred HHHHHHHHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCC-CCC-CcEEEEEeCCcc--------HHHH
Confidence 66666666666554 478899999999874 5888998876655544322 233 222222211100 0011
Q ss_pred HHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCC
Q 000324 1563 TFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEG 1642 (1665)
Q Consensus 1563 ~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~ 1642 (1665)
....+... .+++.+||||+|+++|+.++..|. ..+..++.|||+
T Consensus 216 l~~~l~~~-~~~~~~IIF~~s~~~~e~la~~L~-----------------------------------~~g~~~~~~H~~ 259 (470)
T TIGR00614 216 LLRFIRKE-FKGKSGIIYCPSRKKSEQVTASLQ-----------------------------------NLGIAAGAYHAG 259 (470)
T ss_pred HHHHHHHh-cCCCceEEEECcHHHHHHHHHHHH-----------------------------------hcCCCeeEeeCC
Confidence 12222222 355668999999999999998872 245678999999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEC
Q 000324 1643 LNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1643 m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
|++.+|..+++.|++|.++||||
T Consensus 260 l~~~eR~~i~~~F~~g~~~vLVa 282 (470)
T TIGR00614 260 LEISARDDVHHKFQRDEIQVVVA 282 (470)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEE
Confidence 99999999999999999999997
No 111
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.96 E-value=1.1e-27 Score=292.05 Aligned_cols=366 Identities=26% Similarity=0.391 Sum_probs=236.2
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (1665)
.+..+|.+.+.. ...++.++|+|||.+|||.+...+|=..+... +...+||++|+++|++|+...+..++
T Consensus 511 ~Pd~WQ~elLDs-vDr~eSavIVAPTSaGKTfisfY~iEKVLRes---------D~~VVIyvaPtKaLVnQvsa~VyaRF 580 (1330)
T KOG0949|consen 511 CPDEWQRELLDS-VDRNESAVIVAPTSAGKTFISFYAIEKVLRES---------DSDVVIYVAPTKALVNQVSANVYARF 580 (1330)
T ss_pred CCcHHHHHHhhh-hhcccceEEEeeccCCceeccHHHHHHHHhhc---------CCCEEEEecchHHHhhhhhHHHHHhh
Confidence 578899999986 46678899999999999999888877776554 23479999999999999999998888
Q ss_pred c-cCCcEEEEEECCCcccHhh-hccccEEEeChhhHHHHHhh-cCCCccccceeEEEEeccccccc-CCchHHHHHHHHH
Q 000324 575 Q-MYDVKVRELSGDQTLTRQQ-IEETQIIVTTPEKWDIITRK-SGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVART 650 (1665)
Q Consensus 575 ~-~~gi~V~~ltGd~~~~~~~-~~~~~IiV~TPekld~l~r~-~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~r~ 650 (1665)
. ..-.+...+-|+...+-+. .-+|+|+||-||.++.++-. .....+..+++++|+||+|+++. +.|..+|.++--
T Consensus 581 ~~~t~~rg~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~l- 659 (1330)
T KOG0949|consen 581 DTKTFLRGVSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLL- 659 (1330)
T ss_pred ccCccccchhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHh-
Confidence 4 2212223333443322221 13799999999999776655 22346889999999999999987 466666655432
Q ss_pred HHHHhhccCCeeEEEEcccCCChHHHHHHHhccc-----cCceEEecCC---------------------------Cccc
Q 000324 651 VRQIETTKEHIRLVGLSATLPNYEDVALFLRVNL-----EKGLFYFDNS---------------------------YRPV 698 (1665)
Q Consensus 651 ~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~-----~~~~~~f~~~---------------------------~rpv 698 (1665)
.++.++++|||+.|+..+..|+.... ...+..+... .|.+
T Consensus 660 --------i~CP~L~LSATigN~~l~qkWlnq~~R~~sr~~eli~~~erySel~l~v~n~~~e~n~~yl~~~falgerai 731 (1330)
T KOG0949|consen 660 --------IPCPFLVLSATIGNPNLFQKWLNQRGRAMSRNAELIDYGERYSELGLVVYNRMNEGNAYYLLKLFALGERAI 731 (1330)
T ss_pred --------cCCCeeEEecccCCHHHHHHHHHHHHhhcCCCeeeeehhhhhhhhcceeeccCCCCcchHHHHHHhhchhhc
Confidence 36789999999999999999997210 0001111000 0000
Q ss_pred cc----------eEEEEeeec----------------------------CchhH-----------H----------HHHH
Q 000324 699 PL----------SQQYIGIQV----------------------------KKPLQ-----------R----------FQLM 719 (1665)
Q Consensus 699 ~l----------~~~~~~~~~----------------------------~~~~~-----------~----------~~~~ 719 (1665)
.. ...+..+.. ..... . ....
T Consensus 732 ~~~~~~~~~s~dd~~~lafe~~~~l~~~k~~kl~~k~~p~~~fe~~~~~~k~~~e~~r~~~~l~~~f~e~s~~q~kik~~ 811 (1330)
T KOG0949|consen 732 IVSLRELSESEDDNVVLAFEPLSCLTLRKLNKLLIKITPENFFESNIVTKKEVGEYGRHLLELFQGFIEDSLTQKQIKYV 811 (1330)
T ss_pred cchhhccccCCCCceEeeccchhHHHHHHHHHHHhhcCHHHhhhhhhheechHHHHHHHHHHHHHHhhhcChHHHHHHHH
Confidence 00 000000000 00000 0 0000
Q ss_pred H-------------------HHHHHHHH----HHh--CCCeEEEEecChhHHHHHHHHHHHHhhhcc-------------
Q 000324 720 N-------------------DLCYEKVV----AVA--GKHQVLIFVHSRKETAKTARAIRDTALEND------------- 761 (1665)
Q Consensus 720 ~-------------------~~~~~~i~----~~~--~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~------------- 761 (1665)
. +.+.+.+. ... ..-|.|+|-..|..|+++|...........
T Consensus 812 ~ki~~k~Vnkqle~~~~ys~e~i~~nil~ll~dLkEK~~lpaicfn~dr~fcekla~kv~~~Le~~e~Ee~k~k~m~k~k 891 (1330)
T KOG0949|consen 812 YKLQTKEVNKQLESVVDYSSEYILENILDLLMDLKEKNMLPAICFNTDRDFCEKLALKVHRQLESMEMEEKKDKLMEKMK 891 (1330)
T ss_pred HHhhhhhhhhHhhhcccCcHHHHHHHHHHHHHHHHhccccchhcccchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 0 00000111 111 134899999999888877765432211000
Q ss_pred ----cc-------ccccc------------------------cCch-hHHHHHhhhhcc--ccchhhhhcCCcEEEecCC
Q 000324 762 ----TL-------GRFLK------------------------EDSV-SREILQSHTDMV--KSNDLKDLLPYGFAIHHAG 803 (1665)
Q Consensus 762 ----~l-------~~~~~------------------------~~~~-~~~~l~~~~~~~--~~~~l~~ll~~gv~~~Hag 803 (1665)
.+ ..+.+ +... ....+..+.... .+..+-+++..|+|+||||
T Consensus 892 k~~~~a~~r~Kt~e~~~k~~~~~ek~~~~k~d~~~~~~~f~dp~~~~~~~~f~~~~~~~g~~~~~~id~lyRGiG~HHag 971 (1330)
T KOG0949|consen 892 KEAKRARDREKTKESWIKESIAAEKSFQMKNDKKNIKYTFLDPLTKLTDYEFEEETKFIGNTDFEFIDMLYRGIGVHHAG 971 (1330)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccceEEecCcccccchhhhhhhccccCCCcHHHHHHHHhcccccccc
Confidence 00 00000 0000 000000001111 2445677888999999999
Q ss_pred CCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEE
Q 000324 804 MTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883 (1665)
Q Consensus 804 m~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~i 883 (1665)
|++..|..|+-+|+.|++.||+||.||+-|||+|..+||+-|+. -.+++..|.||+|||||.|||..|.++
T Consensus 972 lNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDs---------LQL~plny~QmaGRAGRRGFD~lGnV~ 1042 (1330)
T KOG0949|consen 972 LNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDS---------LQLDPLNYKQMAGRAGRRGFDTLGNVV 1042 (1330)
T ss_pred cchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccc---------cccCchhHHhhhccccccccccccceE
Confidence 99999999999999999999999999999999999999997542 235778899999999999999999988
Q ss_pred EEeCC
Q 000324 884 IITGH 888 (1665)
Q Consensus 884 il~~~ 888 (1665)
.+--+
T Consensus 1043 FmgiP 1047 (1330)
T KOG0949|consen 1043 FMGIP 1047 (1330)
T ss_pred EEeCc
Confidence 87554
No 112
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.96 E-value=2.6e-27 Score=292.14 Aligned_cols=341 Identities=24% Similarity=0.368 Sum_probs=222.2
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
++.-.|+.+|.+....|+ .+|+||++|||+|||.+|...+++++.... ++|||++||++-|+.|+...+
T Consensus 58 p~~~~lR~YQ~eivq~AL--gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p---------~~KiVF~aP~~pLv~QQ~a~~ 126 (746)
T KOG0354|consen 58 PTNLELRNYQEELVQPAL--GKNTIIALPTGSGKTFIAAVIMKNHFEWRP---------KGKVVFLAPTRPLVNQQIACF 126 (746)
T ss_pred cCcccccHHHHHHhHHhh--cCCeEEEeecCCCccchHHHHHHHHHhcCC---------cceEEEeeCCchHHHHHHHHH
Confidence 345589999999999999 578999999999999999999999987653 469999999999999999888
Q ss_pred HHhhccCCcEEEEEECCC-cccH--hhhccccEEEeChhhH-HHHHhhcCCCccccceeEEEEecccccccCCchHHHHH
Q 000324 571 SNRLQMYDVKVRELSGDQ-TLTR--QQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESI 646 (1665)
Q Consensus 571 ~~~~~~~gi~V~~ltGd~-~~~~--~~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~i 646 (1665)
+..+.+ ..+....||. .... ......+|+|+||.-+ +.|.....+. ++.+.++||||||.-.. ...|-.+
T Consensus 127 ~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~--ls~fs~iv~DE~Hra~k--n~~Y~~V 200 (746)
T KOG0354|consen 127 SIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDE--LSDFSLIVFDECHRTSK--NHPYNNI 200 (746)
T ss_pred hhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccc--cceEEEEEEcccccccc--cccHHHH
Confidence 776554 3444445553 3222 2356889999999986 4444433332 78899999999997643 2345555
Q ss_pred HHHHHHHHhhccCCeeEEEEcccCCC-hHHHHHHHhc---cc--------------------------------------
Q 000324 647 VARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRV---NL-------------------------------------- 684 (1665)
Q Consensus 647 v~r~~~~~~~~~~~~riV~lSATl~n-~~dv~~~l~~---~~-------------------------------------- 684 (1665)
+...+.. .....||+|||||+.+ .+.+...+.. ..
T Consensus 201 mr~~l~~---k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~ 277 (746)
T KOG0354|consen 201 MREYLDL---KNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGM 277 (746)
T ss_pred HHHHHHh---hhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHH
Confidence 5444332 2223499999999874 2222222210 00
Q ss_pred ----------cCceEEe---cCCCc--c----------ccceEE--EE---------------eee------------cC
Q 000324 685 ----------EKGLFYF---DNSYR--P----------VPLSQQ--YI---------------GIQ------------VK 710 (1665)
Q Consensus 685 ----------~~~~~~f---~~~~r--p----------v~l~~~--~~---------------~~~------------~~ 710 (1665)
..+++.. ...+. + .+-.++ +. ++. ..
T Consensus 278 ~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e 357 (746)
T KOG0354|consen 278 IIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEE 357 (746)
T ss_pred HHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccc
Confidence 0000000 00000 0 000001 00 000 00
Q ss_pred chhHH--------------HHHHHHH----------------HHHHHHHH---hCCCeEEEEecChhHHHHHHHHHHHHh
Q 000324 711 KPLQR--------------FQLMNDL----------------CYEKVVAV---AGKHQVLIFVHSRKETAKTARAIRDTA 757 (1665)
Q Consensus 711 ~~~~~--------------~~~~~~~----------------~~~~i~~~---~~~~~vLVFv~sr~~~~~~a~~L~~~~ 757 (1665)
...++ ...|++. +.+.+.++ ....++||||.+|..|..+-.+|....
T Consensus 358 ~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~ 437 (746)
T KOG0354|consen 358 VALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLH 437 (746)
T ss_pred cchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhh
Confidence 00000 0011110 11111222 235689999999999999999887521
Q ss_pred hhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCC
Q 000324 758 LENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLP 837 (1665)
Q Consensus 758 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP 837 (1665)
........ ++..|-+.-..||++.++.++++.|++|.++|||||++++.|+|+|
T Consensus 438 ~~~ir~~~--------------------------fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ 491 (746)
T KOG0354|consen 438 ELGIKAEI--------------------------FIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIG 491 (746)
T ss_pred hcccccce--------------------------eeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcc
Confidence 11000011 1222222234799999999999999999999999999999999999
Q ss_pred ceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcH
Q 000324 838 AHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (1665)
Q Consensus 838 ~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~ 891 (1665)
.+++||. ||..+ ++...+||.|| ||. +.|+++++++..+.
T Consensus 492 ec~lVIc----Yd~~s------npIrmIQrrGR-gRa---~ns~~vll~t~~~~ 531 (746)
T KOG0354|consen 492 ECNLVIC----YDYSS------NPIRMVQRRGR-GRA---RNSKCVLLTTGSEV 531 (746)
T ss_pred cccEEEE----ecCCc------cHHHHHHHhcc-ccc---cCCeEEEEEcchhH
Confidence 9999999 99877 78999999999 996 58999999985443
No 113
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=2.1e-27 Score=283.98 Aligned_cols=454 Identities=17% Similarity=0.184 Sum_probs=287.8
Q ss_pred HHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEE
Q 000324 504 YKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRE 583 (1665)
Q Consensus 504 i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V~~ 583 (1665)
|..+++.+..+||||.||||||+.....+...-..... ..++..|-+..|+|-.|..++.++...++.+|-.|+.
T Consensus 264 IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~-----~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsY 338 (1172)
T KOG0926|consen 264 IMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQ-----SSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSY 338 (1172)
T ss_pred HHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCcc-----CCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeE
Confidence 34456778889999999999999876665554322111 1124477899999999999999999888777767765
Q ss_pred EECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccC----
Q 000324 584 LSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKE---- 659 (1665)
Q Consensus 584 ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~---- 659 (1665)
... ++......+.|.++|.| +|+|.......+..++.||+||||.-. -....+-.+++|+.+.......
T Consensus 339 qIR---fd~ti~e~T~IkFMTDG---VLLrEi~~DflL~kYSvIIlDEAHERS-vnTDILiGmLSRiV~LR~k~~ke~~~ 411 (1172)
T KOG0926|consen 339 QIR---FDGTIGEDTSIKFMTDG---VLLREIENDFLLTKYSVIILDEAHERS-VNTDILIGMLSRIVPLRQKYYKEQCQ 411 (1172)
T ss_pred EEE---eccccCCCceeEEecch---HHHHHHHHhHhhhhceeEEechhhhcc-chHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 443 11122246889999999 788887777889999999999999542 1234455566676665554444
Q ss_pred --CeeEEEEcccCCChHHHHHHHhccc-cCceEEecCCCccccceEEEEeeecCchhHHHHHHHHHHHHHHHHHhCCCeE
Q 000324 660 --HIRLVGLSATLPNYEDVALFLRVNL-EKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQV 736 (1665)
Q Consensus 660 --~~riV~lSATl~n~~dv~~~l~~~~-~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v 736 (1665)
+.++|.|||||. ..|+..--+..| ..+++.++ -|..|+..||-.-+.... ...+..+.| +|++..+.+.+
T Consensus 412 ~kpLKLIIMSATLR-VsDFtenk~LFpi~pPlikVd--ARQfPVsIHF~krT~~DY--i~eAfrKtc--~IH~kLP~G~I 484 (1172)
T KOG0926|consen 412 IKPLKLIIMSATLR-VSDFTENKRLFPIPPPLIKVD--ARQFPVSIHFNKRTPDDY--IAEAFRKTC--KIHKKLPPGGI 484 (1172)
T ss_pred cCceeEEEEeeeEE-ecccccCceecCCCCceeeee--cccCceEEEeccCCCchH--HHHHHHHHH--HHhhcCCCCcE
Confidence 889999999984 233321111111 11233333 355566666553332211 112222222 34556668899
Q ss_pred EEEecChhHHHHHHHHHHHHhhhccc------ccccccc--------------CchhHHHHHhhhh--------------
Q 000324 737 LIFVHSRKETAKTARAIRDTALENDT------LGRFLKE--------------DSVSREILQSHTD-------------- 782 (1665)
Q Consensus 737 LVFv~sr~~~~~~a~~L~~~~~~~~~------l~~~~~~--------------~~~~~~~l~~~~~-------------- 782 (1665)
||||....++..+++.|++.....-. .....+. .+...+.+....+
T Consensus 485 LVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~ 564 (1172)
T KOG0926|consen 485 LVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASL 564 (1172)
T ss_pred EEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhh
Confidence 99999999999999999987431100 0000000 0000000000000
Q ss_pred -----cccc----------chhhh-------------hcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEecccccccc
Q 000324 783 -----MVKS----------NDLKD-------------LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGV 834 (1665)
Q Consensus 783 -----~~~~----------~~l~~-------------ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GV 834 (1665)
...| ++..+ .-+.-|..+++=|+.+++..|++.-..|..=++|||++++.++
T Consensus 565 raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSL 644 (1172)
T KOG0926|consen 565 RAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSL 644 (1172)
T ss_pred hhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhccc
Confidence 0000 01110 1123367789999999999999999999999999999999999
Q ss_pred CCCceEEEEec----ccccCCCCC----CcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcHH-HHHHhh---cCCC
Q 000324 835 NLPAHTVIIKG----TQIYNPEKG----AWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR-YYLSLM---NQQL 902 (1665)
Q Consensus 835 dlP~v~vVI~~----t~~yd~~~g----~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~-~y~~ll---~~~~ 902 (1665)
.+|++.+||++ +..||..+| ...|+|.++--||+|||||.| .|+||.+++..-.+ .+..+- -...
T Consensus 645 TIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg---pGHcYRLYSSAVf~~~Fe~fS~PEIlk~ 721 (1172)
T KOG0926|consen 645 TIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG---PGHCYRLYSSAVFSNDFEEFSLPEILKK 721 (1172)
T ss_pred ccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC---CCceeehhhhHHhhcchhhhccHHHhhC
Confidence 99999999995 567888877 236899999999999999987 89999998864322 111110 0011
Q ss_pred ccccchhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHHHHHHHHHHHhHc
Q 000324 903 PIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRN 982 (1665)
Q Consensus 903 piES~l~~~l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~~ 982 (1665)
|+|+-.+ .+-...|.+ .-+.+. .+.|. ...++.|.+.|...
T Consensus 722 Pve~lvL---------qMKsMnI~k----------------------VvnFPF---PtpPd-----~~~L~~Aer~L~~L 762 (1172)
T KOG0926|consen 722 PVESLVL---------QMKSMNIDK----------------------VVNFPF---PTPPD-----RSALEKAERRLKAL 762 (1172)
T ss_pred cHHHHHH---------HHHhcCccc----------------------eecCCC---CCCcc-----HHHHHHHHHHHHHh
Confidence 2222111 111111111 111111 11221 13468899999999
Q ss_pred CCcccccCCCccccChHHHHHHHhcCCHHHHHHHHHhcCCC
Q 000324 983 NLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPT 1023 (1665)
Q Consensus 983 ~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~ 1023 (1665)
|.++.+ | .+|.||..||+|+++|+-.+++.-+-...
T Consensus 763 gALd~~---g--~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~ 798 (1172)
T KOG0926|consen 763 GALDSN---G--GLTKLGKAMSLFPLSPRFSKMLATSDQHN 798 (1172)
T ss_pred cccccc---C--CcccccchhcccccChhHHHHHHHHHhhc
Confidence 999864 3 78999999999999999999887544333
No 114
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.95 E-value=1e-27 Score=277.63 Aligned_cols=285 Identities=19% Similarity=0.221 Sum_probs=218.9
Q ss_pred hhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhc--CCCCeEEEEEcccHHHHHH
Q 000324 1329 NPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS--ETGVMRAVYIAPLEALAKE 1405 (1665)
Q Consensus 1329 ~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~--~~~~~r~l~I~PtreLa~Q 1405 (1665)
.+..++|.. +|..+|.||.++||..+.|+| |+..|.||||||++|++|+|.++.... +..|+-||||.||||||.|
T Consensus 78 ~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~D-vlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~Q 156 (758)
T KOG0343|consen 78 QKTLKGLKEAKFVKMTEIQRDTIPMALQGHD-VLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQ 156 (758)
T ss_pred hHHHHhHhhcCCccHHHHHHhhcchhccCcc-cccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHH
Confidence 455666655 799999999999999999998 999999999999999999999988752 3445689999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEeCCCccc--hhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchh
Q 000324 1406 RYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483 (1665)
Q Consensus 1406 ~~~~~~~~~~~~~~i~v~~l~G~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~ 1483 (1665)
++..+. +.++..+.+.+++.||.... ...+.+.+|+||||+|+..++.... .....++.++|+||||++++++
T Consensus 157 tFevL~-kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~-~f~t~~lQmLvLDEADR~LDMG--- 231 (758)
T KOG0343|consen 157 TFEVLN-KVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENP-NFSTSNLQMLVLDEADRMLDMG--- 231 (758)
T ss_pred HHHHHH-HHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcC-CCCCCcceEEEeccHHHHHHHh---
Confidence 999999 88988899999999998766 3456778999999999998887532 3356789999999999999988
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEEcccCCC-hHHHHHHhcccCCcEEecC---CCCCccceEEEEeecccchhhHHHHhc
Q 000324 1484 LEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFP---PGVRPVPLEIHIQGVDITNFEARMQAM 1559 (1665)
Q Consensus 1484 ~e~~~srl~~i~~~~~~~~riI~lSATl~n-~~dl~~wl~~~~~~~~~f~---~~~rpv~l~i~i~~~~~~~~~~~~~~~ 1559 (1665)
|-..|..|.+.+|...|.++||||-.. ..|++..--..+ .+..++ ....|..+.....-.+..+-
T Consensus 232 ---Fk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP-~~vsvhe~a~~atP~~L~Q~y~~v~l~~K------- 300 (758)
T KOG0343|consen 232 ---FKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDP-VYVSVHENAVAATPSNLQQSYVIVPLEDK------- 300 (758)
T ss_pred ---HHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCC-cEEEEeccccccChhhhhheEEEEehhhH-------
Confidence 888889999999999999999999876 457776432222 222111 11122222222111111110
Q ss_pred ChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEE
Q 000324 1560 TKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYL 1639 (1665)
Q Consensus 1560 ~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~ 1639 (1665)
....+..|..| ...++|||++|.++++.++..++... .+..+-.+
T Consensus 301 i~~L~sFI~sh--lk~K~iVF~SscKqvkf~~e~F~rlr---------------------------------pg~~l~~L 345 (758)
T KOG0343|consen 301 IDMLWSFIKSH--LKKKSIVFLSSCKQVKFLYEAFCRLR---------------------------------PGIPLLAL 345 (758)
T ss_pred HHHHHHHHHhc--cccceEEEEehhhHHHHHHHHHHhcC---------------------------------CCCceeee
Confidence 11223344444 45679999999999999997774311 34457789
Q ss_pred cCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1640 HEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1640 H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
||+|++..|..|...|....--||+|
T Consensus 346 ~G~~~Q~~R~ev~~~F~~~~~~vLF~ 371 (758)
T KOG0343|consen 346 HGTMSQKKRIEVYKKFVRKRAVVLFC 371 (758)
T ss_pred ccchhHHHHHHHHHHHHHhcceEEEe
Confidence 99999999999999999999999998
No 115
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=9.8e-28 Score=274.88 Aligned_cols=285 Identities=21% Similarity=0.300 Sum_probs=221.4
Q ss_pred ccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhc---CCCCeEEEEEcccHH
Q 000324 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS---ETGVMRAVYIAPLEA 1401 (1665)
Q Consensus 1326 ~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~---~~~~~r~l~I~Ptre 1401 (1665)
++...++.++.. .|.+|+|+|.|++|..+.+++ |+..|-||||||.+|..|++-|+...+ ++.+|.+||+|||||
T Consensus 229 gfDkqLm~airk~Ey~kptpiq~qalptalsgrd-vigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTre 307 (731)
T KOG0339|consen 229 GFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRD-VIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRE 307 (731)
T ss_pred CchHHHHHHHhhhhcccCCccccccccccccccc-chheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHH
Confidence 445566777766 599999999999999999888 999999999999999999999998753 455789999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEEeCCCccchh---ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCC
Q 000324 1402 LAKERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (1665)
Q Consensus 1402 La~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~ 1478 (1665)
||.|++.+++ +|++..|++++.++|+.+...+ +-.++.||||||+|+.+++.. ...++.++.++|+||+++|.+
T Consensus 308 la~Qi~~eaK-kf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~Vkm--Katn~~rvS~LV~DEadrmfd 384 (731)
T KOG0339|consen 308 LASQIFSEAK-KFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKM--KATNLSRVSYLVLDEADRMFD 384 (731)
T ss_pred HHHHHHHHHH-HhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHh--hcccceeeeEEEEechhhhhc
Confidence 9999999999 8999999999999999887633 336789999999999999886 556799999999999999998
Q ss_pred CCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh-HHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHH
Q 000324 1479 QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQ 1557 (1665)
Q Consensus 1479 ~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~-~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~ 1557 (1665)
.+ +...++.|..+..++.|.++||||++-. .-++.-+-..+. |.|..++...+-.+......+.
T Consensus 385 mG------fe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpV---------rvVqg~vgean~dITQ~V~V~~ 449 (731)
T KOG0339|consen 385 MG------FEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPV---------RVVQGEVGEANEDITQTVSVCP 449 (731)
T ss_pred cc------cHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCe---------eEEEeehhccccchhheeeecc
Confidence 88 7888899999999999999999999763 233333322221 2222222221111111111111
Q ss_pred hcChhHHHHHHHHh---cCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcc
Q 000324 1558 AMTKPTFTAIVQHA---KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRH 1634 (1665)
Q Consensus 1558 ~~~k~~~~~i~~~l---~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~ 1634 (1665)
+ ....+..++.++ ...+++||||.....++.++..| ..-++
T Consensus 450 s-~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~L-----------------------------------klk~~ 493 (731)
T KOG0339|consen 450 S-EEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANL-----------------------------------KLKGF 493 (731)
T ss_pred C-cHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHh-----------------------------------ccccc
Confidence 0 111222333332 45678999999999999999777 33567
Q ss_pred cEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1635 GVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1635 gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
.|..+||.|.+.+|..++..|+.+...|||.
T Consensus 494 ~v~llhgdkdqa~rn~~ls~fKkk~~~Vlva 524 (731)
T KOG0339|consen 494 NVSLLHGDKDQAERNEVLSKFKKKRKPVLVA 524 (731)
T ss_pred eeeeecCchhhHHHHHHHHHHhhcCCceEEE
Confidence 8999999999999999999999999999984
No 116
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.95 E-value=1.2e-27 Score=271.05 Aligned_cols=289 Identities=19% Similarity=0.237 Sum_probs=215.6
Q ss_pred ccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhc----CCCCeEEEEEcccH
Q 000324 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS----ETGVMRAVYIAPLE 1400 (1665)
Q Consensus 1326 ~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~----~~~~~r~l~I~Ptr 1400 (1665)
+|...+++++.. ||.+||-||+.|||.++.|.| +++.|.||||||.+|++|+++.+.... ...++.+++++||+
T Consensus 25 gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKD-vvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTk 103 (569)
T KOG0346|consen 25 GLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKD-VVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTK 103 (569)
T ss_pred CCCHHHHHHHHHhCcCCcchhhhcccchhhcCcc-eeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechH
Confidence 455677777777 899999999999999999886 999999999999999999999987642 22357999999999
Q ss_pred HHHHHHHHHHHHHhcCCC--CcEEEEEeCCCccc---hhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccc
Q 000324 1401 ALAKERYRDWEIKFGQGL--GMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHL 1475 (1665)
Q Consensus 1401 eLa~Q~~~~~~~~~~~~~--~i~v~~l~G~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~ 1475 (1665)
|||.|+++.+. ++.... .+++..++.+.+.. .-+...++|||+||+++..+..... ...+..+.++|+||||+
T Consensus 104 EL~qQvy~vie-kL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~-~~~~~~l~~LVvDEADL 181 (569)
T KOG0346|consen 104 ELAQQVYKVIE-KLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGV-LEYLDSLSFLVVDEADL 181 (569)
T ss_pred HHHHHHHHHHH-HHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhcc-chhhhheeeEEechhhh
Confidence 99999999998 444432 35566666544433 3366788999999999998876522 25778999999999999
Q ss_pred cCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCChHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHH
Q 000324 1476 IGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEAR 1555 (1665)
Q Consensus 1476 l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~ 1555 (1665)
+++-+ .-..|+.+.+.+|+..|.+++|||+.+.-.-..-+-+....+..+....-|.|-.+..........
T Consensus 182 llsfG------Yeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~--- 252 (569)
T KOG0346|consen 182 LLSFG------YEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEE--- 252 (569)
T ss_pred hhhcc------cHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccc---
Confidence 98766 556788888899999999999999977433333344444455555554444333332222221111
Q ss_pred HHhcChhHH-HHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcc
Q 000324 1556 MQAMTKPTF-TAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRH 1634 (1665)
Q Consensus 1556 ~~~~~k~~~-~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~ 1634 (1665)
.+... .++++.-.-.+++||||||...|..+-..| +.++.
T Consensus 253 ----DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfL-----------------------------------eqFGi 293 (569)
T KOG0346|consen 253 ----DKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFL-----------------------------------EQFGI 293 (569)
T ss_pred ----hhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHH-----------------------------------HHhCc
Confidence 12211 122222234578999999999999888666 45566
Q ss_pred cEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1635 GVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1635 gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
..++++|.||..-|..|++.|..|.++++|+
T Consensus 294 ksciLNseLP~NSR~Hii~QFNkG~YdivIA 324 (569)
T KOG0346|consen 294 KSCILNSELPANSRCHIIEQFNKGLYDIVIA 324 (569)
T ss_pred HhhhhcccccccchhhHHHHhhCcceeEEEE
Confidence 6789999999999999999999999999984
No 117
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.95 E-value=3.6e-27 Score=303.06 Aligned_cols=282 Identities=19% Similarity=0.270 Sum_probs=197.7
Q ss_pred CCcccccchhHHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccH
Q 000324 1321 PLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLE 1400 (1665)
Q Consensus 1321 p~~~~~L~~~~~~~l~~~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~Ptr 1400 (1665)
++|++.--+..+...| |+..|+|+|.++++.++.|++ ++++||||+|||+||++|++.. .+ .+|||+|++
T Consensus 441 ~fpw~~~L~~~lk~~F-G~~sFRp~Q~eaI~aiL~GrD-VLVimPTGSGKSLcYQLPAL~~------~G--iTLVISPLi 510 (1195)
T PLN03137 441 NFPWTKKLEVNNKKVF-GNHSFRPNQREIINATMSGYD-VFVLMPTGGGKSLTYQLPALIC------PG--ITLVISPLV 510 (1195)
T ss_pred CCCchHHHHHHHHHHc-CCCCCCHHHHHHHHHHHcCCC-EEEEcCCCccHHHHHHHHHHHc------CC--cEEEEeCHH
Confidence 3444432234445555 599999999999999999877 9999999999999999999842 23 899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchh-----cc----CCCcEEEEChhhHHH---HHHhhhccccCCCccEE
Q 000324 1401 ALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK-----LL----EKGQIIISTPEKWDA---LSRRWKQRKYVQQVSLF 1468 (1665)
Q Consensus 1401 eLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~-----~l----~~~~IIV~TPe~l~~---l~r~~~~~~~l~~v~ll 1468 (1665)
+|+.++...+.. .|+++..+.|+.....+ .+ ...+|+++|||+|.. +.+.+........+.+|
T Consensus 511 SLmqDQV~~L~~-----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslI 585 (1195)
T PLN03137 511 SLIQDQIMNLLQ-----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARF 585 (1195)
T ss_pred HHHHHHHHHHHh-----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcccccee
Confidence 999977766652 36889999998765421 11 356999999999852 34333222223568999
Q ss_pred EeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCC--hHHHHHHhcccCCcEEecCCCCCccceEEEEee
Q 000324 1469 IIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQG 1546 (1665)
Q Consensus 1469 ViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n--~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~ 1546 (1665)
||||||++..+ |..++.-...+..+...+ +.+++++||||++. ..++...++.....++. ....|| .+...+..
T Consensus 586 VIDEAHcVSqW-GhDFRpdYr~L~~Lr~~f-p~vPilALTATAT~~V~eDI~~~L~l~~~~vfr-~Sf~Rp-NL~y~Vv~ 661 (1195)
T PLN03137 586 VIDEAHCVSQW-GHDFRPDYQGLGILKQKF-PNIPVLALTATATASVKEDVVQALGLVNCVVFR-QSFNRP-NLWYSVVP 661 (1195)
T ss_pred ccCcchhhhhc-ccchHHHHHHHHHHHHhC-CCCCeEEEEecCCHHHHHHHHHHcCCCCcEEee-cccCcc-ceEEEEec
Confidence 99999999754 455555555555554444 46789999999876 35788888765433332 222344 33322221
Q ss_pred cccchhhHHHHhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHH
Q 000324 1547 VDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEE 1626 (1665)
Q Consensus 1547 ~~~~~~~~~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~ 1626 (1665)
.. . . ........+... ....++||||+||++|+.++..|.
T Consensus 662 k~--k--k----~le~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L~------------------------------- 701 (1195)
T PLN03137 662 KT--K--K----CLEDIDKFIKEN-HFDECGIIYCLSRMDCEKVAERLQ------------------------------- 701 (1195)
T ss_pred cc--h--h----HHHHHHHHHHhc-ccCCCceeEeCchhHHHHHHHHHH-------------------------------
Confidence 10 0 0 001111122222 235679999999999999998772
Q ss_pred HHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1627 MLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1627 ~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
..+..+++|||||++.+|..+++.|++|+++||||
T Consensus 702 ----~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVA 736 (1195)
T PLN03137 702 ----EFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICA 736 (1195)
T ss_pred ----HCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEE
Confidence 34667999999999999999999999999999997
No 118
>PRK14701 reverse gyrase; Provisional
Probab=99.95 E-value=5.2e-27 Score=320.83 Aligned_cols=328 Identities=18% Similarity=0.213 Sum_probs=219.0
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
.|| +|+++|.++++.++.+.+ ++++||||||||++++++.+.... .+.+++||+||++|+.|+++.+
T Consensus 76 ~G~-~pt~iQ~~~i~~il~G~d-~li~APTGsGKTl~~~~~al~~~~-----------~g~~aLVl~PTreLa~Qi~~~l 142 (1638)
T PRK14701 76 TGF-EFWSIQKTWAKRILRGKS-FSIVAPTGMGKSTFGAFIALFLAL-----------KGKKCYIILPTTLLVKQTVEKI 142 (1638)
T ss_pred hCC-CCCHHHHHHHHHHHcCCC-EEEEEcCCCCHHHHHHHHHHHHHh-----------cCCeEEEEECHHHHHHHHHHHH
Confidence 478 699999999999998865 999999999999976665554321 2458999999999999999999
Q ss_pred HHhhccC--CcEEEEEECCCcccHhh-----h--ccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc----
Q 000324 571 SNRLQMY--DVKVRELSGDQTLTRQQ-----I--EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD---- 637 (1665)
Q Consensus 571 ~~~~~~~--gi~V~~ltGd~~~~~~~-----~--~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d---- 637 (1665)
+.....+ ++++..++|+.+...+. + ..++|+|+||+.+....... ...++++|||||||++.+
T Consensus 143 ~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l----~~~~i~~iVVDEAD~ml~~~kn 218 (1638)
T PRK14701 143 ESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM----KHLKFDFIFVDDVDAFLKASKN 218 (1638)
T ss_pred HHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH----hhCCCCEEEEECceeccccccc
Confidence 9977654 56778889988765432 1 25899999999763222211 125689999999999864
Q ss_pred --------CCchHHHH----HHH---------------HHHHHHhhccCCee-EEEEcccCCChHHHHHHHhccccCceE
Q 000324 638 --------NRGPVLES----IVA---------------RTVRQIETTKEHIR-LVGLSATLPNYEDVALFLRVNLEKGLF 689 (1665)
Q Consensus 638 --------~rg~~le~----iv~---------------r~~~~~~~~~~~~r-iV~lSATl~n~~dv~~~l~~~~~~~~~ 689 (1665)
++.+.+.. ++. ++.......+...+ ++.+|||++...+...+++... .|
T Consensus 219 id~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l---~f 295 (1638)
T PRK14701 219 IDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELL---GF 295 (1638)
T ss_pred cchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCe---EE
Confidence 45555442 211 11111112233444 5679999986556666664321 12
Q ss_pred EecCCCccc--cceEEEEeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHH---HHHHHHHHHHhhhccccc
Q 000324 690 YFDNSYRPV--PLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKET---AKTARAIRDTALENDTLG 764 (1665)
Q Consensus 690 ~f~~~~rpv--~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~---~~~a~~L~~~~~~~~~l~ 764 (1665)
.... .++. .+.+.++.... ..+ ..+ .+.+ ... +.++||||+|++.+ +.++..|...+.
T Consensus 296 ~v~~-~~~~lr~i~~~yi~~~~---~~k-~~L----~~ll-~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi------ 358 (1638)
T PRK14701 296 EVGS-GRSALRNIVDVYLNPEK---IIK-EHV----RELL-KKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGF------ 358 (1638)
T ss_pred EecC-CCCCCCCcEEEEEECCH---HHH-HHH----HHHH-HhC-CCCeEEEEeccccchHHHHHHHHHHHCCC------
Confidence 2222 2221 23333332211 111 111 1222 222 46899999998864 788888877543
Q ss_pred cccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEecc----ccccccCCCc-e
Q 000324 765 RFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTA----TLAWGVNLPA-H 839 (1665)
Q Consensus 765 ~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~----tla~GVdlP~-v 839 (1665)
.++.+||+ |..+++.|++|+++|||||+ +++||||+|+ +
T Consensus 359 -------------------------------~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~V 402 (1638)
T PRK14701 359 -------------------------------KIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERI 402 (1638)
T ss_pred -------------------------------eEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCcc
Confidence 35667885 88999999999999999994 8999999999 9
Q ss_pred EEEEecccccCCCCCCcccCCHH-------------HHHhhhcccCCCCCCCceEEEEEeCCCcHHHHHHhhcC
Q 000324 840 TVIIKGTQIYNPEKGAWTELSPL-------------DIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQ 900 (1665)
Q Consensus 840 ~vVI~~t~~yd~~~g~~~~~s~~-------------~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~ 900 (1665)
++||+ |+.|+.++ |+. -.+++.|||||.| ..+.++..+..........++..
T Consensus 403 ryvi~----~~~Pk~~~---~~e~~~~~~~~~~~~~~~~~~~~~a~~~g--~~~~~~~~~~~~~~~~~~~~l~~ 467 (1638)
T PRK14701 403 RFAVF----YGVPKFRF---RVDLEDPTIYRILGLLSEILKIEEELKEG--IPIEGVLDVFPEDVEFLRSILKD 467 (1638)
T ss_pred CEEEE----eCCCCCCc---chhhcccchhhhhcchHHHHHhhhhcccC--CcchhHHHhHHHHHHHHHHHhcc
Confidence 99999 88887432 222 3456779999988 45666544444444555555544
No 119
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.95 E-value=3.1e-27 Score=305.26 Aligned_cols=328 Identities=23% Similarity=0.276 Sum_probs=251.0
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
.|...|++-|.+++...+.+.+ ++|.+|||+||++||+||++-. +..+|+|.|..+|++.+...+
T Consensus 260 Fg~~~FR~~Q~eaI~~~l~Gkd-~fvlmpTG~GKSLCYQlPA~l~--------------~gitvVISPL~SLm~DQv~~L 324 (941)
T KOG0351|consen 260 FGHKGFRPNQLEAINATLSGKD-CFVLMPTGGGKSLCYQLPALLL--------------GGVTVVISPLISLMQDQVTHL 324 (941)
T ss_pred hccccCChhHHHHHHHHHcCCc-eEEEeecCCceeeEeecccccc--------------CCceEEeccHHHHHHHHHHhh
Confidence 4789999999999998887766 9999999999999999998743 236899999999999998887
Q ss_pred HHhhccCCcEEEEEECCCcccHh-----hh--c--cccEEEeChhhH---HHHHhhcCCCccccceeEEEEeccccccc-
Q 000324 571 SNRLQMYDVKVRELSGDQTLTRQ-----QI--E--ETQIIVTTPEKW---DIITRKSGDRTYTQLVKLLIIDEIHLLHD- 637 (1665)
Q Consensus 571 ~~~~~~~gi~V~~ltGd~~~~~~-----~~--~--~~~IiV~TPekl---d~l~r~~~~~~~l~~v~liIiDEaH~l~d- 637 (1665)
.. .+|....+.|+.....+ .+ + ..+|++.|||++ ..+.+..........+.++||||||++..
T Consensus 325 ~~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqW 400 (941)
T KOG0351|consen 325 SK----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQW 400 (941)
T ss_pred hh----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhh
Confidence 33 47889999998776432 11 2 578999999986 22222222222223389999999999965
Q ss_pred --CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCC--hHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchh
Q 000324 638 --NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713 (1665)
Q Consensus 638 --~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n--~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~ 713 (1665)
+|.|.|..+..-. ...+.+.+|+||||.+. .+||.+-|+... .-.|..++.+-.+...+..-....
T Consensus 401 gHdFRp~Yk~l~~l~-----~~~~~vP~iALTATAT~~v~~DIi~~L~l~~---~~~~~~sfnR~NL~yeV~~k~~~~-- 470 (941)
T KOG0351|consen 401 GHDFRPSYKRLGLLR-----IRFPGVPFIALTATATERVREDVIRSLGLRN---PELFKSSFNRPNLKYEVSPKTDKD-- 470 (941)
T ss_pred cccccHHHHHHHHHH-----hhCCCCCeEEeehhccHHHHHHHHHHhCCCC---cceecccCCCCCceEEEEeccCcc--
Confidence 4667776544322 12345899999999853 578888888752 225566666655544433222111
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhc
Q 000324 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (1665)
Q Consensus 714 ~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll 793 (1665)
. ...+...+........+||||.+|++|+.++..|+..+..
T Consensus 471 ---~--~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~---------------------------------- 511 (941)
T KOG0351|consen 471 ---A--LLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKS---------------------------------- 511 (941)
T ss_pred ---c--hHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchh----------------------------------
Confidence 0 1112233445556789999999999999999999987633
Q ss_pred CCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCC
Q 000324 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (1665)
Q Consensus 794 ~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (1665)
.+++||||+..+|..|.+.|..++++|+|||=++++|||.|+|+.||| |+.|+ |...|.|-+|||||
T Consensus 512 ---a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH----~~lPk------s~E~YYQE~GRAGR 578 (941)
T KOG0351|consen 512 ---AAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIH----YSLPK------SFEGYYQEAGRAGR 578 (941)
T ss_pred ---hHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEE----CCCch------hHHHHHHhccccCc
Confidence 356799999999999999999999999999999999999999999999 99888 99999999999999
Q ss_pred CCCCCceEEEEEeCCCcHHHHHHhhcCC
Q 000324 874 PQYDSYGEGIIITGHSELRYYLSLMNQQ 901 (1665)
Q Consensus 874 ~g~d~~G~~iil~~~~~~~~y~~ll~~~ 901 (1665)
.| ....|++++...+......++...
T Consensus 579 DG--~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 579 DG--LPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred CC--CcceeEEecchhHHHHHHHHHHcc
Confidence 99 678999999998877777766554
No 120
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.95 E-value=2.4e-26 Score=298.11 Aligned_cols=369 Identities=21% Similarity=0.187 Sum_probs=235.5
Q ss_pred CCCHHHHHHHHHHHcC--CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000324 495 QLNRVQSRVYKSALSS--ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~--~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (1665)
.||+.|.++++.+..+ ..+++++||||||||.+|+.++...+.. +.+++|++|+++|+.|++++|++
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~-----------g~~vLvLvPt~~L~~Q~~~~l~~ 212 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ-----------GKQALVLVPEIALTPQMLARFRA 212 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc-----------CCeEEEEeCcHHHHHHHHHHHHH
Confidence 6899999999999874 5679999999999999999888777653 34799999999999999999988
Q ss_pred hhccCCcEEEEEECCCcccHhh-------hccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc--CCchHH
Q 000324 573 RLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD--NRGPVL 643 (1665)
Q Consensus 573 ~~~~~gi~V~~ltGd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d--~rg~~l 643 (1665)
.+ |.++..++|+.+...+. ....+|+|+||..+ . ..+.++++|||||+|.... ..++.+
T Consensus 213 ~f---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal---~------~p~~~l~liVvDEeh~~s~~~~~~p~y 280 (679)
T PRK05580 213 RF---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL---F------LPFKNLGLIIVDEEHDSSYKQQEGPRY 280 (679)
T ss_pred Hh---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh---c------ccccCCCEEEEECCCccccccCcCCCC
Confidence 65 57899999987654321 13579999999853 1 3467899999999997653 234443
Q ss_pred HH-HHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccc-eEEEEeeecCchhHHHHHHHH
Q 000324 644 ES-IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPL-SQQYIGIQVKKPLQRFQLMND 721 (1665)
Q Consensus 644 e~-iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l-~~~~~~~~~~~~~~~~~~~~~ 721 (1665)
.. -++. ......+.++|++|||. ..+........ .-........+...++ ...++.............+..
T Consensus 281 ~~r~va~----~ra~~~~~~~il~SATp-s~~s~~~~~~g--~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~ 353 (679)
T PRK05580 281 HARDLAV----VRAKLENIPVVLGSATP-SLESLANAQQG--RYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSP 353 (679)
T ss_pred cHHHHHH----HHhhccCCCEEEEcCCC-CHHHHHHHhcc--ceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCH
Confidence 21 1111 11235688999999994 44433332211 1112222222211122 222332211000000012334
Q ss_pred HHHHHHHHHhC-CCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhh----------hcc------
Q 000324 722 LCYEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHT----------DMV------ 784 (1665)
Q Consensus 722 ~~~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~----------~~~------ 784 (1665)
.+++.+.+... ++|+|||+|.|..+..+...-+.....+...+..+..+.......+..+ ..+
T Consensus 354 ~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~ 433 (679)
T PRK05580 354 PLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLV 433 (679)
T ss_pred HHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeE
Confidence 55555665554 6699999999987765555555443333322222211111111011111 001
Q ss_pred --------ccchhhhhcC-CcEEEecCCCC--HHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEE--ecccccCC
Q 000324 785 --------KSNDLKDLLP-YGFAIHHAGMT--RGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVII--KGTQIYNP 851 (1665)
Q Consensus 785 --------~~~~l~~ll~-~gv~~~Hagm~--~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI--~~t~~yd~ 851 (1665)
-.+.|+..++ ..|...|+.+. ..+++.+++.|++|+.+|||+|+.+++|+|+|++++|+ +.+...+.
T Consensus 434 ~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~ 513 (679)
T PRK05580 434 PVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFS 513 (679)
T ss_pred EeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccC
Confidence 1223444443 47888999987 46799999999999999999999999999999999874 43333333
Q ss_pred CCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcHHHHH
Q 000324 852 EKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYL 895 (1665)
Q Consensus 852 ~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~ 895 (1665)
+..+-.+-....|+|++|||||.+ ..|.+++.+...+...+.
T Consensus 514 pdfra~Er~~~~l~q~~GRagR~~--~~g~viiqT~~p~~~~~~ 555 (679)
T PRK05580 514 PDFRASERTFQLLTQVAGRAGRAE--KPGEVLIQTYHPEHPVIQ 555 (679)
T ss_pred CccchHHHHHHHHHHHHhhccCCC--CCCEEEEEeCCCCCHHHH
Confidence 333333345688999999999965 789999998876644433
No 121
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=4.1e-27 Score=277.98 Aligned_cols=307 Identities=19% Similarity=0.298 Sum_probs=216.3
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCCcccccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHH
Q 000324 1296 VLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICS 1374 (1665)
Q Consensus 1296 ~~~vs~~~l~lp~~~~~~t~ll~l~p~~~~~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a 1374 (1665)
.+++...+...|...+ .+.-..+...+..++.. ++..|||+|+-++|.+.+|++ +++||+||||||.+|
T Consensus 59 ~i~v~~~G~~~p~~i~---------~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grd-l~acAqTGsGKT~aF 128 (482)
T KOG0335|consen 59 DIPVKVSGRDVPPHIP---------TFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRD-LMACAQTGSGKTAAF 128 (482)
T ss_pred ceeeeccCCccCCCcc---------cccccchhHHHhhccccccccCCCcceeeccceeecCCc-eEEEccCCCcchHHH
Confidence 4556566666655433 11122333444445544 799999999999999999888 999999999999999
Q ss_pred HHHHHHHHHhhcC--------CCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccc---hhccCCCcEEE
Q 000324 1375 EFAILRNHQKASE--------TGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD---LKLLEKGQIII 1443 (1665)
Q Consensus 1375 ~l~il~~l~~~~~--------~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~---~~~l~~~~IIV 1443 (1665)
++|++.++..... ...|+++|++||||||.|++++.+ +|.-..+++++.++|+.+.. ...-+++||+|
T Consensus 129 LiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~-k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlv 207 (482)
T KOG0335|consen 129 LIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEAR-KFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILV 207 (482)
T ss_pred HHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHH-hhcccccceeeeeeCCcchhhhhhhhccCccEEE
Confidence 9999999987521 124799999999999999999999 78777889999999996554 33556789999
Q ss_pred EChhhHHHHHHhhhccccCCCccEEEeecccccCC-CC-chhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh-HHHH-H
Q 000324 1444 STPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLG-E 1519 (1665)
Q Consensus 1444 ~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~-~~-g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~-~dl~-~ 1519 (1665)
|||+++.++..+ ....+++++++|+||||.|++ .+ +|.++.++.++... -....|.++||||++.. ..++ .
T Consensus 208 aTpGrL~d~~e~--g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~---~~~~~qt~mFSAtfp~~iq~l~~~ 282 (482)
T KOG0335|consen 208 ATPGRLKDLIER--GKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMP---PKNNRQTLLFSATFPKEIQRLAAD 282 (482)
T ss_pred ecCchhhhhhhc--ceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCC---CccceeEEEEeccCChhhhhhHHH
Confidence 999999999886 667899999999999999988 44 44444444332211 01478999999999873 2233 2
Q ss_pred HhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcC----hhHHHHHHHHhc---CCC-----CEEEEeCchHHH
Q 000324 1520 WIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT----KPTFTAIVQHAK---NEK-----PALVFVPSRKYV 1587 (1665)
Q Consensus 1520 wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~----k~~~~~i~~~l~---~~~-----~~IVFv~sr~~a 1587 (1665)
++... |+ -+.+...+-...+..+....+. +..+..++.... ... .++|||.|++.|
T Consensus 283 fl~~~----yi--------~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~ 350 (482)
T KOG0335|consen 283 FLKDN----YI--------FLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGA 350 (482)
T ss_pred Hhhcc----ce--------EEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchh
Confidence 33211 11 1222222222222222222221 111222222111 122 599999999999
Q ss_pred HHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1588 RLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1588 ~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
..++..|. ..++....+||.-++.+|...+++|++|++.||||
T Consensus 351 d~l~~~l~-----------------------------------~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVa 393 (482)
T KOG0335|consen 351 DELAAFLS-----------------------------------SNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVA 393 (482)
T ss_pred hHHHHHHh-----------------------------------cCCCCceeecchhhhhHHHHHHHHhhcCCcceEEE
Confidence 99998873 24556789999999999999999999999999998
No 122
>PRK09401 reverse gyrase; Reviewed
Probab=99.95 E-value=2.1e-26 Score=309.62 Aligned_cols=304 Identities=22% Similarity=0.215 Sum_probs=203.5
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000324 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1665)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (1665)
|+ .|+++|..+++.++.+ ++++++||||+|||.. .++++..+.. .+.+++||+||++||.|+++.++
T Consensus 78 G~-~pt~iQ~~~i~~il~g-~dv~i~ApTGsGKT~f-~l~~~~~l~~----------~g~~alIL~PTreLa~Qi~~~l~ 144 (1176)
T PRK09401 78 GS-KPWSLQRTWAKRLLLG-ESFAIIAPTGVGKTTF-GLVMSLYLAK----------KGKKSYIIFPTRLLVEQVVEKLE 144 (1176)
T ss_pred CC-CCcHHHHHHHHHHHCC-CcEEEEcCCCCCHHHH-HHHHHHHHHh----------cCCeEEEEeccHHHHHHHHHHHH
Confidence 56 8999999999999877 5599999999999964 4444444332 24589999999999999999999
Q ss_pred HhhccCCcEEEEEECCCcccH---h-h-----hccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc-----
Q 000324 572 NRLQMYDVKVRELSGDQTLTR---Q-Q-----IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD----- 637 (1665)
Q Consensus 572 ~~~~~~gi~V~~ltGd~~~~~---~-~-----~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d----- 637 (1665)
......++.+..++|+..... . . ...++|+|+||+++...... .....+++||+||||.+.+
T Consensus 145 ~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~----l~~~~~~~lVvDEaD~~L~~~k~i 220 (1176)
T PRK09401 145 KFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE----LPKKKFDFVFVDDVDAVLKSSKNI 220 (1176)
T ss_pred HHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh----ccccccCEEEEEChHHhhhcccch
Confidence 998888888888888765321 1 1 13589999999986433331 2345599999999999875
Q ss_pred -------CCc-hHHHHHHHHHHH----------------HHhh-ccCCeeEEEEcccCCChHHHH-HHHhccccCceEEe
Q 000324 638 -------NRG-PVLESIVARTVR----------------QIET-TKEHIRLVGLSATLPNYEDVA-LFLRVNLEKGLFYF 691 (1665)
Q Consensus 638 -------~rg-~~le~iv~r~~~----------------~~~~-~~~~~riV~lSATl~n~~dv~-~~l~~~~~~~~~~f 691 (1665)
++. ..++.++..+.. .+.. .....|++++|||++.. .+. .+++... .|..
T Consensus 221 d~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~-~~~~~l~~~ll---~~~v 296 (1176)
T PRK09401 221 DKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPR-GNRVKLFRELL---GFEV 296 (1176)
T ss_pred hhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCcc-chHHHHhhccc---eEEe
Confidence 221 344444433311 0000 12267899999999742 121 1222110 1111
Q ss_pred cCC-CccccceEEEEeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhH---HHHHHHHHHHHhhhcccccccc
Q 000324 692 DNS-YRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKE---TAKTARAIRDTALENDTLGRFL 767 (1665)
Q Consensus 692 ~~~-~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~---~~~~a~~L~~~~~~~~~l~~~~ 767 (1665)
... ...-.+.+.++... .+...+.. +.... +.++||||++++. +..++..|...+.
T Consensus 297 ~~~~~~~rnI~~~yi~~~-----~k~~~L~~-----ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~gi--------- 356 (1176)
T PRK09401 297 GSPVFYLRNIVDSYIVDE-----DSVEKLVE-----LVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDLGI--------- 356 (1176)
T ss_pred cCcccccCCceEEEEEcc-----cHHHHHHH-----HHHhc-CCCEEEEEecccChHHHHHHHHHHHHCCC---------
Confidence 111 11122344444322 11122221 22222 4689999999888 9999998887653
Q ss_pred ccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEe----ccccccccCCCc-eEEE
Q 000324 768 KEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVS----TATLAWGVNLPA-HTVI 842 (1665)
Q Consensus 768 ~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVa----T~tla~GVdlP~-v~vV 842 (1665)
.++.+||+| +| .++.|++|+++|||| |++++||||+|+ +++|
T Consensus 357 ----------------------------~v~~~hg~l---~~--~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryV 403 (1176)
T PRK09401 357 ----------------------------NAELAISGF---ER--KFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYA 403 (1176)
T ss_pred ----------------------------cEEEEeCcH---HH--HHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEE
Confidence 356679999 22 349999999999999 689999999999 8999
Q ss_pred EecccccCCCCCCcccCCHHHHHhhhcccCC
Q 000324 843 IKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (1665)
Q Consensus 843 I~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (1665)
|+ |+.|+.++.---...+.||+||+-+
T Consensus 404 I~----y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 404 IF----YGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred EE----eCCCCEEEeccccccCHHHHHHHHh
Confidence 99 8888644322234568999999863
No 123
>PRK13766 Hef nuclease; Provisional
Probab=99.95 E-value=2.6e-25 Score=298.18 Aligned_cols=336 Identities=22% Similarity=0.311 Sum_probs=220.7
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000324 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1665)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (1665)
.-+++++|.+++..++.+ |+|+++|||+|||.+|.+++...+.. .+.++|||+|+++|+.|+.+.+++
T Consensus 13 ~~~~r~yQ~~~~~~~l~~--n~lv~~ptG~GKT~~a~~~i~~~l~~----------~~~~vLvl~Pt~~L~~Q~~~~~~~ 80 (773)
T PRK13766 13 TIEARLYQQLLAATALKK--NTLVVLPTGLGKTAIALLVIAERLHK----------KGGKVLILAPTKPLVEQHAEFFRK 80 (773)
T ss_pred cCCccHHHHHHHHHHhcC--CeEEEcCCCccHHHHHHHHHHHHHHh----------CCCeEEEEeCcHHHHHHHHHHHHH
Confidence 347899999999988876 79999999999999999998887732 144899999999999999999998
Q ss_pred hhccCCcEEEEEECCCcccHh--hhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHH
Q 000324 573 RLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVART 650 (1665)
Q Consensus 573 ~~~~~gi~V~~ltGd~~~~~~--~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~ 650 (1665)
.+...+.++..++|+...... ...+.+|+|+||+.+...... ....+..+++|||||||++....+ +..+..+.
T Consensus 81 ~~~~~~~~v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~--~~~~~~~~~liVvDEaH~~~~~~~--~~~i~~~~ 156 (773)
T PRK13766 81 FLNIPEEKIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIA--GRISLEDVSLLIFDEAHRAVGNYA--YVYIAERY 156 (773)
T ss_pred HhCCCCceEEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHc--CCCChhhCcEEEEECCcccccccc--HHHHHHHH
Confidence 776445688899998765432 345789999999986322211 123567899999999999865322 22232222
Q ss_pred HHHHhhccCCeeEEEEcccCCC-hHHHHHHHhccccCceEEecCCCcc----c--cceEEEEeeecCchh----------
Q 000324 651 VRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYRP----V--PLSQQYIGIQVKKPL---------- 713 (1665)
Q Consensus 651 ~~~~~~~~~~~riV~lSATl~n-~~dv~~~l~~~~~~~~~~f~~~~rp----v--~l~~~~~~~~~~~~~---------- 713 (1665)
.......+++|||||... ...+...+..-. ...+.+.+.+.+ . +....++.+......
T Consensus 157 ----~~~~~~~~il~lTaTP~~~~~~i~~~~~~L~-i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~ 231 (773)
T PRK13766 157 ----HEDAKNPLVLGLTASPGSDEEKIKEVCENLG-IEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEA 231 (773)
T ss_pred ----HhcCCCCEEEEEEcCCCCCHHHHHHHHHhCC-ceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHH
Confidence 223456789999999642 333333322110 001111111110 0 000000000000000
Q ss_pred ------------------------------HH------------HH----------------------------------
Q 000324 714 ------------------------------QR------------FQ---------------------------------- 717 (1665)
Q Consensus 714 ------------------------------~~------------~~---------------------------------- 717 (1665)
.. +.
T Consensus 232 ~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~ 311 (773)
T PRK13766 232 LKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLR 311 (773)
T ss_pred HHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 00 00
Q ss_pred -----------------------HH---H---------HHHHHHHHH---HhCCCeEEEEecChhHHHHHHHHHHHHhhh
Q 000324 718 -----------------------LM---N---------DLCYEKVVA---VAGKHQVLIFVHSRKETAKTARAIRDTALE 759 (1665)
Q Consensus 718 -----------------------~~---~---------~~~~~~i~~---~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~ 759 (1665)
.+ . ..+.+.+.+ ..+++++||||++++.|..++..|...+..
T Consensus 312 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~ 391 (773)
T PRK13766 312 EEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIK 391 (773)
T ss_pred hhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCc
Confidence 00 0 000001111 134679999999999999999998654432
Q ss_pred ccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCce
Q 000324 760 NDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAH 839 (1665)
Q Consensus 760 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v 839 (1665)
...+ .. .+-.--|+||++.+|..+++.|++|.++|||||+++++|+|+|++
T Consensus 392 ~~~~---~g--------------------------~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~ 442 (773)
T PRK13766 392 AVRF---VG--------------------------QASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSV 442 (773)
T ss_pred eEEE---Ec--------------------------cccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccC
Confidence 2110 00 000001567999999999999999999999999999999999999
Q ss_pred EEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcH
Q 000324 840 TVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (1665)
Q Consensus 840 ~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~ 891 (1665)
++||+ ||++. +...|+||+||+||.| .|.+++++.....
T Consensus 443 ~~VI~----yd~~~------s~~r~iQR~GR~gR~~---~~~v~~l~~~~t~ 481 (773)
T PRK13766 443 DLVIF----YEPVP------SEIRSIQRKGRTGRQE---EGRVVVLIAKGTR 481 (773)
T ss_pred CEEEE----eCCCC------CHHHHHHHhcccCcCC---CCEEEEEEeCCCh
Confidence 99999 88875 8889999999999975 4888888876543
No 124
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=2.8e-25 Score=277.82 Aligned_cols=319 Identities=17% Similarity=0.145 Sum_probs=218.4
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (1665)
.++++|..+++.++.+. |..+.||+|||++|.+|++..... +..+++++||+.||.|.++.+...+
T Consensus 103 ~p~~VQ~~~~~~ll~G~---Iae~~TGeGKTla~~lp~~~~al~-----------G~~v~VvTptreLA~qdae~~~~l~ 168 (656)
T PRK12898 103 RHFDVQLMGGLALLSGR---LAEMQTGEGKTLTATLPAGTAALA-----------GLPVHVITVNDYLAERDAELMRPLY 168 (656)
T ss_pred CCChHHHHHHHHHhCCC---eeeeeCCCCcHHHHHHHHHHHhhc-----------CCeEEEEcCcHHHHHHHHHHHHHHH
Confidence 67899999999998775 999999999999999999987543 4579999999999999999999999
Q ss_pred ccCCcEEEEEECCCcccHh-hhccccEEEeChhhH--HHHHhhcC----------------------CCccccceeEEEE
Q 000324 575 QMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKSG----------------------DRTYTQLVKLLII 629 (1665)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~~-~~~~~~IiV~TPekl--d~l~r~~~----------------------~~~~l~~v~liIi 629 (1665)
..+|++|+.++|+.+...+ ....++|+|+|...+ |.|..+.. .......+.+.||
T Consensus 169 ~~lGlsv~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIv 248 (656)
T PRK12898 169 EALGLTVGCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIV 248 (656)
T ss_pred hhcCCEEEEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEe
Confidence 9999999999999764332 345899999999985 55543321 1123355788999
Q ss_pred ecccccc-cC-C----------ch---HHHHHHHHHHHHHhh--------------------------------------
Q 000324 630 DEIHLLH-DN-R----------GP---VLESIVARTVRQIET-------------------------------------- 656 (1665)
Q Consensus 630 DEaH~l~-d~-r----------g~---~le~iv~r~~~~~~~-------------------------------------- 656 (1665)
||||.+. |+ + .. .+-..+.++.+.+..
T Consensus 249 DEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~ 328 (656)
T PRK12898 249 DEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAV 328 (656)
T ss_pred ecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccch
Confidence 9999652 11 1 11 000000111000000
Q ss_pred -----------------------------------c-----------------------------------------cCC
Q 000324 657 -----------------------------------T-----------------------------------------KEH 660 (1665)
Q Consensus 657 -----------------------------------~-----------------------------------------~~~ 660 (1665)
+ ...
T Consensus 329 ~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y 408 (656)
T PRK12898 329 RREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRY 408 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhh
Confidence 0 001
Q ss_pred eeEEEEcccCCCh-HHHHHHHhccccCceEEecCCCccccceE--EEEeeecCchhHHHHHHHHHHHHHHHH-HhCCCeE
Q 000324 661 IRLVGLSATLPNY-EDVALFLRVNLEKGLFYFDNSYRPVPLSQ--QYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQV 736 (1665)
Q Consensus 661 ~riV~lSATl~n~-~dv~~~l~~~~~~~~~~f~~~~rpv~l~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~v 736 (1665)
.++.|||||++.. +++..+.+.++ ..-+..+|..... .++..+ ...+...+... +.. +..+.++
T Consensus 409 ~kl~GmTGTa~~~~~El~~~y~l~v-----v~IPt~kp~~r~~~~~~v~~t---~~~K~~aL~~~----i~~~~~~~~pv 476 (656)
T PRK12898 409 LRLAGMTGTAREVAGELWSVYGLPV-----VRIPTNRPSQRRHLPDEVFLT---AAAKWAAVAAR----VRELHAQGRPV 476 (656)
T ss_pred HHHhcccCcChHHHHHHHHHHCCCe-----EEeCCCCCccceecCCEEEeC---HHHHHHHHHHH----HHHHHhcCCCE
Confidence 2678888888752 24444444432 2234444442111 112111 22233333332 222 2235789
Q ss_pred EEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHH
Q 000324 737 LIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLF 816 (1665)
Q Consensus 737 LVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F 816 (1665)
||||+|++.++.++..|...+.. +..+||.+...++..+ .|
T Consensus 477 LIft~t~~~se~L~~~L~~~gi~-------------------------------------~~~Lhg~~~~rE~~ii--~~ 517 (656)
T PRK12898 477 LVGTRSVAASERLSALLREAGLP-------------------------------------HQVLNAKQDAEEAAIV--AR 517 (656)
T ss_pred EEEeCcHHHHHHHHHHHHHCCCC-------------------------------------EEEeeCCcHHHHHHHH--HH
Confidence 99999999999999999876532 4566998765555544 45
Q ss_pred hCCCCCeEEeccccccccCCC---ceE-----EEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCC
Q 000324 817 GDGHVQVLVSTATLAWGVNLP---AHT-----VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (1665)
Q Consensus 817 ~~g~i~VLVaT~tla~GVdlP---~v~-----vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (1665)
+.+...|+|||++++||+|+| ++. +||+ |+.+. |...|.||+|||||.| ..|.++.+.+.
T Consensus 518 ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~----~d~P~------s~r~y~hr~GRTGRqG--~~G~s~~~is~ 585 (656)
T PRK12898 518 AGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVIL----TERHD------SARIDRQLAGRCGRQG--DPGSYEAILSL 585 (656)
T ss_pred cCCCCcEEEEccchhcccCcCCccchhhcCCCEEEE----cCCCC------CHHHHHHhcccccCCC--CCeEEEEEech
Confidence 555567999999999999999 665 8998 88876 7889999999999988 78999999887
Q ss_pred Cc
Q 000324 889 SE 890 (1665)
Q Consensus 889 ~~ 890 (1665)
++
T Consensus 586 eD 587 (656)
T PRK12898 586 ED 587 (656)
T ss_pred hH
Confidence 54
No 125
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=2e-26 Score=280.86 Aligned_cols=293 Identities=28% Similarity=0.493 Sum_probs=228.2
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000324 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i 1420 (1665)
.+-++|++||-++..|. +|+|.|+|.+|||++|+.||.-.-.. .. |++|-+|.++|-+|.+++|+..|+.
T Consensus 297 elD~FQk~Ai~~lerg~-SVFVAAHTSAGKTvVAEYAialaq~h---~T--R~iYTSPIKALSNQKfRDFk~tF~D---- 366 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLERGD-SVFVAAHTSAGKTVVAEYAIALAQKH---MT--RTIYTSPIKALSNQKFRDFKETFGD---- 366 (1248)
T ss_pred CccHHHHHHHHHHHcCC-eEEEEecCCCCcchHHHHHHHHHHhh---cc--ceEecchhhhhccchHHHHHHhccc----
Confidence 68899999999988755 49999999999999999998743322 33 9999999999999999999999985
Q ss_pred EEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCC-CCchhHHHHHHHHHHHHhhcC
Q 000324 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQVE 1499 (1665)
Q Consensus 1421 ~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~-~~g~~~e~~~srl~~i~~~~~ 1499 (1665)
|+.+||+.... ..+.++|.|.|.|-+++.+ +...++++.+||+||+|-+.+ ++|.+||.++= .+|
T Consensus 367 -vgLlTGDvqin----PeAsCLIMTTEILRsMLYr--gadliRDvE~VIFDEVHYiND~eRGvVWEEViI-------MlP 432 (1248)
T KOG0947|consen 367 -VGLLTGDVQIN----PEASCLIMTTEILRSMLYR--GADLIRDVEFVIFDEVHYINDVERGVVWEEVII-------MLP 432 (1248)
T ss_pred -cceeecceeeC----CCcceEeehHHHHHHHHhc--ccchhhccceEEEeeeeecccccccccceeeee-------ecc
Confidence 55899987655 6789999999999998876 566788999999999999988 67999988762 468
Q ss_pred CCCeEEEEcccCCChHHHHHHhcccCC-cEEecCCCCCccceEEEEeecccc-----------------hhhHH-----H
Q 000324 1500 NKIRIVALSTSLANAKDLGEWIGATSH-GLFNFPPGVRPVPLEIHIQGVDIT-----------------NFEAR-----M 1556 (1665)
Q Consensus 1500 ~~~riI~lSATl~n~~dl~~wl~~~~~-~~~~f~~~~rpv~l~i~i~~~~~~-----------------~~~~~-----~ 1556 (1665)
..+++|+||||+||..++|.|+|..+. .++..+...||||++..+..-..- +..+. .
T Consensus 433 ~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~ 512 (1248)
T KOG0947|consen 433 RHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKF 512 (1248)
T ss_pred ccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccc
Confidence 999999999999999999999999875 466677779999999877321000 00000 0
Q ss_pred H------------------------------h--c-Ch--hHHHHHHHHhc--CCCCEEEEeCchHHHHHHHHHHHHhcc
Q 000324 1557 Q------------------------------A--M-TK--PTFTAIVQHAK--NEKPALVFVPSRKYVRLTAVDLMTYSS 1599 (1665)
Q Consensus 1557 ~------------------------------~--~-~k--~~~~~i~~~l~--~~~~~IVFv~sr~~a~~la~~L~~~~~ 1599 (1665)
. . - .+ +.+..++.++. ..-|+||||-||+.|+..|+.|.....
T Consensus 513 ~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL 592 (1248)
T KOG0947|consen 513 VDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNL 592 (1248)
T ss_pred cccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCc
Confidence 0 0 0 01 24555555543 345899999999999999999976555
Q ss_pred cCCCcccccccCCcccchhhHh----hhh--H------HHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1600 MDGDQKSAFLLWPAEEVEPFID----NIQ--E------EMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1600 ~~~~~~~~~l~~~~~~l~~~~~----~i~--d------~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
.++.++ +++.-+++ +++ | -.+++.+..|+++||||+-+--+..|+.+|..|-++||++
T Consensus 593 ~~~~EK--------seV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFA 662 (1248)
T KOG0947|consen 593 TDSKEK--------SEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFA 662 (1248)
T ss_pred ccchhH--------HHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEee
Confidence 443332 23333333 232 2 2456788899999999999999999999999999999984
No 126
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=1.5e-26 Score=257.78 Aligned_cols=298 Identities=17% Similarity=0.233 Sum_probs=219.6
Q ss_pred CCCCCCCCCCCcccccchhHHHHHhc-CCCCCCHHHHHHHHHHHc-CCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCC
Q 000324 1312 PPTELLDLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYN-TDDNVLVAAPTGSGKTICSEFAILRNHQKASETG 1389 (1665)
Q Consensus 1312 ~~t~ll~l~p~~~~~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~-~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~ 1389 (1665)
|.+|+.....+.--.|++++++++|. +|..|+.||..|+|.++. ...|.|.++..|+|||.||.|.+|.+.... ..
T Consensus 82 pnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~--~~ 159 (477)
T KOG0332|consen 82 PNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD--VV 159 (477)
T ss_pred CCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc--cc
Confidence 56777777777778899999999998 999999999999999886 557999999999999999999999888764 33
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEE
Q 000324 1390 VMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFI 1469 (1665)
Q Consensus 1390 ~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llV 1469 (1665)
.|++++|+|+||||.|+.+.+. ..|+..++++....-+........-..+|+|+||+.+.++..+++ ...++.++.+|
T Consensus 160 ~PQ~iCLaPtrELA~Q~~eVv~-eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk-~id~~kikvfV 237 (477)
T KOG0332|consen 160 VPQCICLAPTRELAPQTGEVVE-EMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLK-CIDLEKIKVFV 237 (477)
T ss_pred CCCceeeCchHHHHHHHHHHHH-HhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHH-hhChhhceEEE
Confidence 4599999999999999999998 788877777666555442221111234899999999988877643 45688999999
Q ss_pred eecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCChH-HHHHHhcccCCcEEecCCCCCccceEEEEeecc
Q 000324 1470 IDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAK-DLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVD 1548 (1665)
Q Consensus 1470 iDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~~-dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~ 1548 (1665)
+||||.+.+..| +-..-..|...++++.|+++||||+.... .++.-+-..+ .++.+.-....
T Consensus 238 lDEAD~Mi~tqG-----~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~------------n~i~Lk~eel~ 300 (477)
T KOG0332|consen 238 LDEADVMIDTQG-----FQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNA------------NVIILKREELA 300 (477)
T ss_pred ecchhhhhhccc-----ccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCC------------ceeeeehhhcc
Confidence 999998877543 22222223344578999999999997743 4444442222 12222222222
Q ss_pred cchhhHHHHhc--ChhHHHHHHHHh--cCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhh
Q 000324 1549 ITNFEARMQAM--TKPTFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQ 1624 (1665)
Q Consensus 1549 ~~~~~~~~~~~--~k~~~~~i~~~l--~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~ 1624 (1665)
...+.+.+... ....|+.+.... ..-+++||||.|++.|.+++..|
T Consensus 301 L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m------------------------------ 350 (477)
T KOG0332|consen 301 LDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEM------------------------------ 350 (477)
T ss_pred ccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHH------------------------------
Confidence 22222222111 223444444421 34478999999999999999888
Q ss_pred HHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1625 EEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1625 d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
...++.|..+||+|...+|..+++.|+.|.-+|||.
T Consensus 351 -----~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLit 386 (477)
T KOG0332|consen 351 -----RAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLIT 386 (477)
T ss_pred -----HhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEE
Confidence 346788999999999999999999999999999983
No 127
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.94 E-value=1.2e-25 Score=291.49 Aligned_cols=268 Identities=21% Similarity=0.304 Sum_probs=199.6
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHH
Q 000324 1331 LYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDW 1410 (1665)
Q Consensus 1331 ~~~~l~~~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~ 1410 (1665)
.++..| ||.+|+|+|.++++.+++|++ ++++||||+|||+||++|++. ..+ .++||+|+++|+.|++..+
T Consensus 4 ~l~~~f-g~~~fr~~Q~~~i~~il~g~d-vlv~~PTG~GKTl~y~lpal~------~~g--~~lVisPl~sL~~dq~~~l 73 (591)
T TIGR01389 4 VLKRTF-GYDDFRPGQEEIISHVLDGRD-VLVVMPTGGGKSLCYQVPALL------LKG--LTVVISPLISLMKDQVDQL 73 (591)
T ss_pred HHHHhc-CCCCCCHHHHHHHHHHHcCCC-EEEEcCCCccHhHHHHHHHHH------cCC--cEEEEcCCHHHHHHHHHHH
Confidence 445555 499999999999999999875 999999999999999999983 233 7999999999999999988
Q ss_pred HHHhcCCCCcEEEEEeCCCccchh-------ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchh
Q 000324 1411 EIKFGQGLGMRVVELTGETAMDLK-------LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483 (1665)
Q Consensus 1411 ~~~~~~~~~i~v~~l~G~~~~~~~-------~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~ 1483 (1665)
+. + |+.+..++|+.+.+.. .....+|+++||+++... .|.......++++|||||||++. .+|..
T Consensus 74 ~~-~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~--~~~~~l~~~~l~~iViDEaH~i~-~~g~~ 145 (591)
T TIGR01389 74 RA-A----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQD--YFLNMLQRIPIALVAVDEAHCVS-QWGHD 145 (591)
T ss_pred HH-c----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcCh--HHHHHHhcCCCCEEEEeCCcccc-cccCc
Confidence 83 3 5788889988765521 113458999999998532 22233445789999999999996 45677
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEEcccCCCh--HHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcCh
Q 000324 1484 LEVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTK 1561 (1665)
Q Consensus 1484 ~e~~~srl~~i~~~~~~~~riI~lSATl~n~--~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k 1561 (1665)
++..+.++..+...++. .++++||||.+.. .++..|++......+. .+..|| .+...+.... . ...
T Consensus 146 frp~y~~l~~l~~~~~~-~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~-~~~~r~-nl~~~v~~~~--~-------~~~ 213 (591)
T TIGR01389 146 FRPEYQRLGSLAERFPQ-VPRIALTATADAETRQDIRELLRLADANEFI-TSFDRP-NLRFSVVKKN--N-------KQK 213 (591)
T ss_pred cHHHHHHHHHHHHhCCC-CCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe-cCCCCC-CcEEEEEeCC--C-------HHH
Confidence 77777888777766654 4499999998763 5799999876655443 333344 2222221110 0 001
Q ss_pred hHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcC
Q 000324 1562 PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHE 1641 (1665)
Q Consensus 1562 ~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~ 1641 (1665)
.....+.. ..+.++||||+|++.|+.++..|. ..+..++.|||
T Consensus 214 ~l~~~l~~--~~~~~~IIf~~sr~~~e~la~~L~-----------------------------------~~g~~~~~~H~ 256 (591)
T TIGR01389 214 FLLDYLKK--HRGQSGIIYASSRKKVEELAERLE-----------------------------------SQGISALAYHA 256 (591)
T ss_pred HHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHH-----------------------------------hCCCCEEEEEC
Confidence 12222222 235789999999999999998772 23556899999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1642 GLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1642 ~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
+|+..+|..+++.|.+|.++||||
T Consensus 257 ~l~~~~R~~i~~~F~~g~~~vlVa 280 (591)
T TIGR01389 257 GLSNKVRAENQEDFLYDDVKVMVA 280 (591)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEE
Confidence 999999999999999999999997
No 128
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=1.8e-25 Score=282.55 Aligned_cols=319 Identities=16% Similarity=0.205 Sum_probs=204.8
Q ss_pred CCCCHHHHHHHHHHHcCC--CcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000324 494 TQLNRVQSRVYKSALSSA--DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~--~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (1665)
..|+|+|.+++..++..+ .+.++++|||+|||++++.++.. + +.++|||||+..|+.|+.++|.
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-l-------------~k~tLILvps~~Lv~QW~~ef~ 319 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-V-------------KKSCLVLCTSAVSVEQWKQQFK 319 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-h-------------CCCEEEEeCcHHHHHHHHHHHH
Confidence 478999999999988654 47899999999999999766543 2 1259999999999999999999
Q ss_pred HhhccCCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCC----Cccc--cceeEEEEecccccccCCchHHHH
Q 000324 572 NRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGD----RTYT--QLVKLLIIDEIHLLHDNRGPVLES 645 (1665)
Q Consensus 572 ~~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~----~~~l--~~v~liIiDEaH~l~d~rg~~le~ 645 (1665)
+++......+..++|+.... ......|+|+|+..+....++... ...+ ..+++||+||||++.. +.+..
T Consensus 320 ~~~~l~~~~I~~~tg~~k~~--~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA---~~fr~ 394 (732)
T TIGR00603 320 MWSTIDDSQICRFTSDAKER--FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA---AMFRR 394 (732)
T ss_pred HhcCCCCceEEEEecCcccc--cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH---HHHHH
Confidence 87643346788888865322 123478999999854322111100 0112 3578999999998842 33333
Q ss_pred HHHHHHHHHhhccCCeeEEEEcccCCChH----HHHHHHhccccCceEEec-------CCCccccceEEEEeeecC----
Q 000324 646 IVARTVRQIETTKEHIRLVGLSATLPNYE----DVALFLRVNLEKGLFYFD-------NSYRPVPLSQQYIGIQVK---- 710 (1665)
Q Consensus 646 iv~r~~~~~~~~~~~~riV~lSATl~n~~----dv~~~l~~~~~~~~~~f~-------~~~rpv~l~~~~~~~~~~---- 710 (1665)
++.. .. ....+|||||+...+ ++...++- .++... .-.-++......+..+..
T Consensus 395 il~~-------l~-a~~RLGLTATP~ReD~~~~~L~~LiGP----~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~ 462 (732)
T TIGR00603 395 VLTI-------VQ-AHCKLGLTATLVREDDKITDLNFLIGP----KLYEANWMELQKKGFIANVQCAEVWCPMTPEFYRE 462 (732)
T ss_pred HHHh-------cC-cCcEEEEeecCcccCCchhhhhhhcCC----eeeecCHHHHHhCCccccceEEEEEecCCHHHHHH
Confidence 3322 22 234699999976322 22222221 111110 001111111111111110
Q ss_pred ------chhHHHHHHHHHHHH---HHHH-H-hCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHh
Q 000324 711 ------KPLQRFQLMNDLCYE---KVVA-V-AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQS 779 (1665)
Q Consensus 711 ------~~~~~~~~~~~~~~~---~i~~-~-~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~ 779 (1665)
.....+..++..-+. .++. + ..+.++||||.+...+..++..|
T Consensus 463 yl~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L-------------------------- 516 (732)
T TIGR00603 463 YLRENSRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL-------------------------- 516 (732)
T ss_pred HHHhcchhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc--------------------------
Confidence 000111122211111 1222 2 24679999999988776666544
Q ss_pred hhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCC-CCCeEEeccccccccCCCceEEEEecccccCCCCCCccc
Q 000324 780 HTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDG-HVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTE 858 (1665)
Q Consensus 780 ~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g-~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~ 858 (1665)
|+.+.||+++..+|..+++.|++| .+++||+|.++.+|||+|++++||+ ++++.|
T Consensus 517 ----------------~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~----~s~~~g---- 572 (732)
T TIGR00603 517 ----------------GKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQ----ISSHYG---- 572 (732)
T ss_pred ----------------CCceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEE----eCCCCC----
Confidence 124469999999999999999865 8899999999999999999999999 776644
Q ss_pred CCHHHHHhhhcccCCCCCCCc-----eEEEEEeCCCcHHHH
Q 000324 859 LSPLDIMQMLGRAGRPQYDSY-----GEGIIITGHSELRYY 894 (1665)
Q Consensus 859 ~s~~~~~Qr~GRAGR~g~d~~-----G~~iil~~~~~~~~y 894 (1665)
|..+|+||+||++|++.++. ...|.+++.+..+.+
T Consensus 573 -S~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~ 612 (732)
T TIGR00603 573 -SRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMY 612 (732)
T ss_pred -CHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHH
Confidence 88999999999999984432 233777777665544
No 129
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.94 E-value=4.7e-26 Score=251.73 Aligned_cols=330 Identities=20% Similarity=0.291 Sum_probs=241.8
Q ss_pred hhhHhhcCCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHH
Q 000324 484 EWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563 (1665)
Q Consensus 484 ~~~~~~f~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa 563 (1665)
+.++..|. .+.|+|.|..++...+.+.+ +++..|||.||++||.||.|-. +.-+++|+|..+|+
T Consensus 84 ~ilk~~f~-lekfrplq~~ain~~ma~ed-~~lil~tgggkslcyqlpal~a--------------dg~alvi~plislm 147 (695)
T KOG0353|consen 84 DILKEQFH-LEKFRPLQLAAINATMAGED-AFLILPTGGGKSLCYQLPALCA--------------DGFALVICPLISLM 147 (695)
T ss_pred HHHHHHhh-HHhcChhHHHHhhhhhccCc-eEEEEeCCCccchhhhhhHHhc--------------CCceEeechhHHHH
Confidence 34555553 67899999999999988866 8888999999999999998853 33689999999999
Q ss_pred HHHHHHHHHhhccCCcEEEEEECCCcccHhh---------hccccEEEeChhhH---HHHHhhcCCCccccceeEEEEec
Q 000324 564 AEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---------IEETQIIVTTPEKW---DIITRKSGDRTYTQLVKLLIIDE 631 (1665)
Q Consensus 564 ~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~---------~~~~~IiV~TPekl---d~l~r~~~~~~~l~~v~liIiDE 631 (1665)
..+.-.++. +|+....+...++..... -.+..+|+.|||++ ..+..+.........+++|-|||
T Consensus 148 edqil~lkq----lgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaide 223 (695)
T KOG0353|consen 148 EDQILQLKQ----LGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDE 223 (695)
T ss_pred HHHHHHHHH----hCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecc
Confidence 988777665 477777666655543321 12567999999996 22222221112345689999999
Q ss_pred cccccc---CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCC--hHHHHHHHhccccCceEEecCCCccccceEEEEe
Q 000324 632 IHLLHD---NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIG 706 (1665)
Q Consensus 632 aH~l~d---~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n--~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~ 706 (1665)
+|+... ++.|.+..+ .-+.| .-++..++||+||.+| ..|+...|+.. ..|.|...|....+...+..
T Consensus 224 vhccsqwghdfr~dy~~l-~ilkr----qf~~~~iigltatatn~vl~d~k~il~ie---~~~tf~a~fnr~nl~yev~q 295 (695)
T KOG0353|consen 224 VHCCSQWGHDFRPDYKAL-GILKR----QFKGAPIIGLTATATNHVLDDAKDILCIE---AAFTFRAGFNRPNLKYEVRQ 295 (695)
T ss_pred eeehhhhCcccCcchHHH-HHHHH----hCCCCceeeeehhhhcchhhHHHHHHhHH---hhheeecccCCCCceeEeee
Confidence 999864 466776543 22222 3568899999999887 56777888764 36777777765555433322
Q ss_pred eecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhcccc
Q 000324 707 IQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKS 786 (1665)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~ 786 (1665)
-+. +...-.. -+...+.....+...||||-|+++|++++..|...++..
T Consensus 296 kp~-n~dd~~e----di~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a-------------------------- 344 (695)
T KOG0353|consen 296 KPG-NEDDCIE----DIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHA-------------------------- 344 (695)
T ss_pred CCC-ChHHHHH----HHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccc--------------------------
Confidence 111 1111111 122223333446688999999999999999999876543
Q ss_pred chhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHh
Q 000324 787 NDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQ 866 (1665)
Q Consensus 787 ~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Q 866 (1665)
+.+|+.|.+.||.-+-+.+..|+++|+|||-++++|||-|++++||+ .+.++ |+..|.|
T Consensus 345 -----------~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvih----hsl~k------sienyyq 403 (695)
T KOG0353|consen 345 -----------GAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIH----HSLPK------SIENYYQ 403 (695)
T ss_pred -----------cccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEe----cccch------hHHHHHH
Confidence 44699999999999999999999999999999999999999999999 66666 8888999
Q ss_pred -------------------------------------------hhcccCCCCCCCceEEEEEeCCCcHHHHH
Q 000324 867 -------------------------------------------MLGRAGRPQYDSYGEGIIITGHSELRYYL 895 (1665)
Q Consensus 867 -------------------------------------------r~GRAGR~g~d~~G~~iil~~~~~~~~y~ 895 (1665)
..|||||.+ ....||+++.-.+.-...
T Consensus 404 asarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~--~~a~cilyy~~~difk~s 473 (695)
T KOG0353|consen 404 ASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDD--MKADCILYYGFADIFKIS 473 (695)
T ss_pred HHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCC--CcccEEEEechHHHHhHH
Confidence 789999976 678899988766554433
No 130
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=4.1e-25 Score=282.05 Aligned_cols=324 Identities=19% Similarity=0.211 Sum_probs=217.3
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000324 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1665)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (1665)
|+ .++++|..+...+..+ -|+.+.||+|||++|.+|++..... +..+.+++|++.||.|.+..+.
T Consensus 76 g~-~p~~vQl~~~~~l~~G---~Iaem~TGeGKTL~a~lp~~l~al~-----------G~~v~VvTpt~~LA~qd~e~~~ 140 (790)
T PRK09200 76 GM-RPYDVQLIGALVLHEG---NIAEMQTGEGKTLTATMPLYLNALE-----------GKGVHLITVNDYLAKRDAEEMG 140 (790)
T ss_pred CC-CCchHHHHhHHHHcCC---ceeeecCCCcchHHHHHHHHHHHHc-----------CCCeEEEeCCHHHHHHHHHHHH
Confidence 44 7889999998866544 3999999999999999999865543 3469999999999999999999
Q ss_pred HhhccCCcEEEEEECCCc-cc-HhhhccccEEEeChhhH--HHHHhhcC---CCccccceeEEEEecccccc-c-CCch-
Q 000324 572 NRLQMYDVKVRELSGDQT-LT-RQQIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLLH-D-NRGP- 641 (1665)
Q Consensus 572 ~~~~~~gi~V~~ltGd~~-~~-~~~~~~~~IiV~TPekl--d~l~r~~~---~~~~l~~v~liIiDEaH~l~-d-~rg~- 641 (1665)
..+..+|++|+.++|+.+ .. ++....++|+|+||+.+ |.+..+.. ....+..+.++||||||.+. | .+.|
T Consensus 141 ~l~~~lGl~v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpl 220 (790)
T PRK09200 141 QVYEFLGLTVGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPL 220 (790)
T ss_pred HHHhhcCCeEEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCce
Confidence 999999999999999987 22 33446799999999996 66655431 22356788999999999763 2 1222
Q ss_pred ----------HHHHHHHHHHHHHhhc-----cCCe---------------------------------------------
Q 000324 642 ----------VLESIVARTVRQIETT-----KEHI--------------------------------------------- 661 (1665)
Q Consensus 642 ----------~le~iv~r~~~~~~~~-----~~~~--------------------------------------------- 661 (1665)
.+-.++.++...+... ....
T Consensus 221 iisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~ 300 (790)
T PRK09200 221 IISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFK 300 (790)
T ss_pred eeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhh
Confidence 1111222222111100 0011
Q ss_pred ----------------------------------------------------------------eEEEEcccCCChHHHH
Q 000324 662 ----------------------------------------------------------------RLVGLSATLPNYEDVA 677 (1665)
Q Consensus 662 ----------------------------------------------------------------riV~lSATl~n~~dv~ 677 (1665)
++.|||.|....+ .
T Consensus 301 ~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~--~ 378 (790)
T PRK09200 301 RDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEE--K 378 (790)
T ss_pred cCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHH--H
Confidence 2333333322100 1
Q ss_pred HHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHHHHHHHHHHHHH-HhCCCeEEEEecChhHHHHHHHHHHHH
Q 000324 678 LFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVHSRKETAKTARAIRDT 756 (1665)
Q Consensus 678 ~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~vLVFv~sr~~~~~~a~~L~~~ 756 (1665)
+|.... .-.+ ..-|..+|+.....--.+.. ....+..++. +.+.. +..+.|+||||+|++.+..++..|...
T Consensus 379 e~~~~Y-~l~v-~~IPt~kp~~r~d~~~~i~~-~~~~K~~al~----~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~ 451 (790)
T PRK09200 379 EFFEVY-NMEV-VQIPTNRPIIRIDYPDKVFV-TLDEKYKAVI----EEVKERHETGRPVLIGTGSIEQSETFSKLLDEA 451 (790)
T ss_pred HHHHHh-CCcE-EECCCCCCcccccCCCeEEc-CHHHHHHHHH----HHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC
Confidence 111111 0011 12233334322110000000 1112222222 22222 234789999999999999999999876
Q ss_pred hhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCC
Q 000324 757 ALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNL 836 (1665)
Q Consensus 757 ~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdl 836 (1665)
+.. +..+||.+.+.++..+...+..| +|+|||+.++||+|+
T Consensus 452 gi~-------------------------------------~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI 492 (790)
T PRK09200 452 GIP-------------------------------------HNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDI 492 (790)
T ss_pred CCC-------------------------------------EEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCC
Confidence 432 45679999999998888887776 799999999999999
Q ss_pred ---CceE-----EEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCc
Q 000324 837 ---PAHT-----VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (1665)
Q Consensus 837 ---P~v~-----vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~ 890 (1665)
|++. +||+ |+.+. |...|.||+|||||.| ..|.++.+++..+
T Consensus 493 ~l~~~V~~~GGL~VI~----~d~p~------s~r~y~qr~GRtGR~G--~~G~s~~~is~eD 542 (790)
T PRK09200 493 KLGEGVHELGGLAVIG----TERME------SRRVDLQLRGRSGRQG--DPGSSQFFISLED 542 (790)
T ss_pred CcccccccccCcEEEe----ccCCC------CHHHHHHhhccccCCC--CCeeEEEEEcchH
Confidence 7998 9999 88776 8889999999999988 8899999888644
No 131
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=1.8e-25 Score=255.47 Aligned_cols=440 Identities=17% Similarity=0.206 Sum_probs=287.3
Q ss_pred HHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCC
Q 000324 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYD 578 (1665)
Q Consensus 499 iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~g 578 (1665)
-|+.-|...+..+..++++|.||||||.......+.....+. ..+.+..|.|--|.+++.++... ++
T Consensus 50 ~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~----------~~v~CTQprrvaamsva~RVadE---MD 116 (699)
T KOG0925|consen 50 EQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL----------TGVACTQPRRVAAMSVAQRVADE---MD 116 (699)
T ss_pred HhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc----------cceeecCchHHHHHHHHHHHHHH---hc
Confidence 467778888999998999999999999877766666554432 24889999999999999998774 45
Q ss_pred cEEEEEECCC-cccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhc
Q 000324 579 VKVRELSGDQ-TLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETT 657 (1665)
Q Consensus 579 i~V~~ltGd~-~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~ 657 (1665)
+..+.-.|-. .+.+....++-+-+||.+ +++|.......+..+++||+|||| +|.-..+.++.-+...+ ..
T Consensus 117 v~lG~EVGysIrfEdC~~~~T~Lky~tDg---mLlrEams~p~l~~y~viiLDeah----ERtlATDiLmGllk~v~-~~ 188 (699)
T KOG0925|consen 117 VTLGEEVGYSIRFEDCTSPNTLLKYCTDG---MLLREAMSDPLLGRYGVIILDEAH----ERTLATDILMGLLKEVV-RN 188 (699)
T ss_pred cccchhccccccccccCChhHHHHHhcch---HHHHHHhhCcccccccEEEechhh----hhhHHHHHHHHHHHHHH-hh
Confidence 6666555532 222222233445567777 778887777889999999999999 44444444444333333 33
Q ss_pred cCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHHHHHHHHHHHHHHhCCCeEE
Q 000324 658 KEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVL 737 (1665)
Q Consensus 658 ~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vL 737 (1665)
.++.++|.+|||+ ....+..|++..| +..+.+ ..|+.+ .| ........+.+....+++... ....+.++
T Consensus 189 rpdLk~vvmSatl-~a~Kfq~yf~n~P---ll~vpg-~~PvEi--~Y---t~e~erDylEaairtV~qih~-~ee~GDil 257 (699)
T KOG0925|consen 189 RPDLKLVVMSATL-DAEKFQRYFGNAP---LLAVPG-THPVEI--FY---TPEPERDYLEAAIRTVLQIHM-CEEPGDIL 257 (699)
T ss_pred CCCceEEEeeccc-chHHHHHHhCCCC---eeecCC-CCceEE--Ee---cCCCChhHHHHHHHHHHHHHh-ccCCCCEE
Confidence 5799999999998 5678888887654 444444 344433 22 222233445555555554332 23378999
Q ss_pred EEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHh
Q 000324 738 IFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFG 817 (1665)
Q Consensus 738 VFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~ 817 (1665)
||..+..+.+..++.+.....+.. .+..+..|..+| +.++..+++...
T Consensus 258 vFLtgeeeIe~aC~~i~re~~~L~----------------------------~~~g~l~v~PLy----P~~qq~iFep~p 305 (699)
T KOG0925|consen 258 VFLTGEEEIEDACRKISREVDNLG----------------------------PQVGPLKVVPLY----PAQQQRIFEPAP 305 (699)
T ss_pred EEecCHHHHHHHHHHHHHHHHhhc----------------------------cccCCceEEecC----chhhccccCCCC
Confidence 999999999999988875432211 112233455556 334444444332
Q ss_pred C---C--CCCeEEeccccccccCCCceEEEEec----ccccCCCCC----CcccCCHHHHHhhhcccCCCCCCCceEEEE
Q 000324 818 D---G--HVQVLVSTATLAWGVNLPAHTVIIKG----TQIYNPEKG----AWTELSPLDIMQMLGRAGRPQYDSYGEGII 884 (1665)
Q Consensus 818 ~---g--~i~VLVaT~tla~GVdlP~v~vVI~~----t~~yd~~~g----~~~~~s~~~~~Qr~GRAGR~g~d~~G~~ii 884 (1665)
. | ..+|+|+|++++..+.++++.+||+- .++|+|... -..++|..+..||.|||||. ..|.|+.
T Consensus 306 ~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt---~pGkcfr 382 (699)
T KOG0925|consen 306 EKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFR 382 (699)
T ss_pred cccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC---CCCceEE
Confidence 1 2 35899999999999999999999983 678998753 23689999999999999996 6899999
Q ss_pred EeCCCcHHHHHHhhcCCCccccchhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhH
Q 000324 885 ITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITL 964 (1665)
Q Consensus 885 l~~~~~~~~y~~ll~~~~piES~l~~~l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l 964 (1665)
+++.+- |.+-+..+ ...+.++.+|.+-+..-.-..+ .++-.+. +.+.|.
T Consensus 383 LYte~~---~~~em~~~-----typeilrsNL~s~VL~LKklgI-----------------~dlvhfd-----fmDpPA- 431 (699)
T KOG0925|consen 383 LYTEEA---FEKEMQPQ-----TYPEILRSNLSSTVLQLKKLGI-----------------DDLVHFD-----FMDPPA- 431 (699)
T ss_pred eecHHh---hhhcCCCC-----CcHHHHHHhhHHHHHHHHhcCc-----------------ccccCCc-----CCCCCC-
Confidence 998643 22212111 1112233333222211110111 1111111 111121
Q ss_pred HHHHHHHHHHHHHHHhHcCCcccccCCCccccChHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHhcCCccCCCCcC
Q 000324 965 GERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTV 1044 (1665)
Q Consensus 965 ~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~~s~s~Ef~~i~~ 1044 (1665)
-+....|++.|.-.+++..| | .+|++|.+||.|+++|..+++++.+....|+ .++|.|-++-+- .+..+
T Consensus 432 ----PEtLMrALE~LnYLaaLdDd---G--nLT~lG~imSEFPLdPqLAkmLi~S~efnCs-nEiLsisAMLsv-PncFv 500 (699)
T KOG0925|consen 432 ----PETLMRALEVLNYLAALDDD---G--NLTSLGEIMSEFPLDPQLAKMLIGSCEFNCS-NEILSISAMLSV-PNCFV 500 (699)
T ss_pred ----hHHHHHHHHHhhhhhhhCCC---c--ccchhhhhhhcCCCChHHHHHHhhcCCCCch-HHHHHHHhcccC-Ccccc
Confidence 13345677777777776544 4 7899999999999999999999999988887 678876665332 45567
Q ss_pred Chh
Q 000324 1045 RQD 1047 (1665)
Q Consensus 1045 R~~ 1047 (1665)
|..
T Consensus 501 Rp~ 503 (699)
T KOG0925|consen 501 RPT 503 (699)
T ss_pred CCC
Confidence 765
No 132
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=7e-27 Score=247.19 Aligned_cols=328 Identities=22% Similarity=0.300 Sum_probs=232.0
Q ss_pred CCCCCccccCCCceEEecCCCCCCCCCCCCCccccCCCChhhHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCc
Q 000324 445 LPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAG 523 (1665)
Q Consensus 445 lp~g~~~~~~~~~eei~vp~~~~~~~~~~~~l~~i~~Lp~~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsG 523 (1665)
.|.|..+..+.+|-.||-......- --|+.++... .||++|+.+|.+|+|.++.+-+ ++..|..|.|
T Consensus 24 ~~~~~~~d~kgsyv~ihssgfrdfl-----------lkpellraivdcgfehpsevqhecipqailgmd-vlcqaksgmg 91 (387)
T KOG0329|consen 24 APAGPKKDKKGSYVSIHSSGFRDFL-----------LKPELLRAIVDCGFEHPSEVQHECIPQAILGMD-VLCQAKSGMG 91 (387)
T ss_pred CCCCccccccCcEEEEeccchhhhh-----------cCHHHHHHHHhccCCCchHhhhhhhhHHhhcch-hheecccCCC
Confidence 3455555556668887765432111 1144555544 7999999999999999999877 9999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccC-CcEEEEEECCCcccHhh---hcccc
Q 000324 524 KTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ---IEETQ 599 (1665)
Q Consensus 524 KT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~-gi~V~~ltGd~~~~~~~---~~~~~ 599 (1665)
||.+|.|+-|+.+..- + +...+++++.||+||-|+..++.++.+.+ +++|..+.|+..+.+.. .+-++
T Consensus 92 ktavfvl~tlqqiepv---~-----g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~Ph 163 (387)
T KOG0329|consen 92 KTAVFVLATLQQIEPV---D-----GQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPH 163 (387)
T ss_pred ceeeeehhhhhhcCCC---C-----CeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCe
Confidence 9999999999988643 1 25679999999999999988776655533 79999999999876542 24679
Q ss_pred EEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc---CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCC-hHH
Q 000324 600 IIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD---NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YED 675 (1665)
Q Consensus 600 IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d---~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n-~~d 675 (1665)
|+|+||+++..+.|... ..+++++.+|+|||+.+.+ .|..+-| +...++...|++.+|||+++ ..-
T Consensus 164 ivVgTPGrilALvr~k~--l~lk~vkhFvlDEcdkmle~lDMrRDvQE--------ifr~tp~~KQvmmfsatlskeiRp 233 (387)
T KOG0329|consen 164 IVVGTPGRILALVRNRS--LNLKNVKHFVLDECDKMLEQLDMRRDVQE--------IFRMTPHEKQVMMFSATLSKEIRP 233 (387)
T ss_pred EEEcCcHHHHHHHHhcc--CchhhcceeehhhHHHHHHHHHHHHHHHH--------HhhcCcccceeeeeeeecchhhHH
Confidence 99999999988888765 5789999999999998754 2322222 23347888999999999985 223
Q ss_pred HHHHHhccccCceEEecC-CCccccceEEEEeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHH
Q 000324 676 VALFLRVNLEKGLFYFDN-SYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIR 754 (1665)
Q Consensus 676 v~~~l~~~~~~~~~~f~~-~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~ 754 (1665)
+..-+..+|- .+|.-+. ...---++|+|+...+....+++.. ++....-+|++|||.|....
T Consensus 234 vC~kFmQdPm-Ei~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~d--------LLd~LeFNQVvIFvKsv~Rl-------- 296 (387)
T KOG0329|consen 234 VCHKFMQDPM-EIFVDDEAKLTLHGLQQYYVKLKENEKNRKLND--------LLDVLEFNQVVIFVKSVQRL-------- 296 (387)
T ss_pred HHHhhhcCch-hhhccchhhhhhhhHHHHHHhhhhhhhhhhhhh--------hhhhhhhcceeEeeehhhhh--------
Confidence 3332222221 1111111 1112235556655554433333222 22333467999999775430
Q ss_pred HHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEecccccccc
Q 000324 755 DTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGV 834 (1665)
Q Consensus 755 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GV 834 (1665)
+ | ..+ ||||+.++||+
T Consensus 297 --------------------------------------------------~----------f---~kr-~vat~lfgrgm 312 (387)
T KOG0329|consen 297 --------------------------------------------------S----------F---QKR-LVATDLFGRGM 312 (387)
T ss_pred --------------------------------------------------h----------h---hhh-hHHhhhhcccc
Confidence 0 2 123 89999999999
Q ss_pred CCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcHHHHH
Q 000324 835 NLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYL 895 (1665)
Q Consensus 835 dlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~ 895 (1665)
|+-.+..||+ ||.|. +..+|+||+|||||-| +.|.+|.+.+..+....+
T Consensus 313 diervNi~~N----Ydmp~------~~DtYlHrv~rAgrfG--tkglaitfvs~e~da~iL 361 (387)
T KOG0329|consen 313 DIERVNIVFN----YDMPE------DSDTYLHRVARAGRFG--TKGLAITFVSDENDAKIL 361 (387)
T ss_pred Ccccceeeec----cCCCC------CchHHHHHhhhhhccc--cccceeehhcchhhHHHh
Confidence 9999999999 88887 7789999999999977 999999999886655443
No 133
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.94 E-value=7.8e-25 Score=276.53 Aligned_cols=347 Identities=16% Similarity=0.177 Sum_probs=220.2
Q ss_pred CCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc
Q 000324 496 LNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ 575 (1665)
Q Consensus 496 l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~ 575 (1665)
++|+|.+++..+..... .++.++||+|||++|.+|++..... +..++|++|++.||.|.++.+...+.
T Consensus 69 lrpydVQlig~l~l~~G-~Iaem~TGeGKTLta~Lpa~l~aL~-----------g~~V~VVTpn~yLA~Rdae~m~~l~~ 136 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQG-NIAEMKTGEGKTLTATMPLYLNALT-----------GKGAMLVTTNDYLAKRDAEEMGPVYE 136 (762)
T ss_pred CCccHHHHHHHHHhcCC-ceeEecCCcchHHHHHHHHHHHhhc-----------CCceEEeCCCHHHHHHHHHHHHHHHh
Confidence 45555556655444434 6999999999999999998765543 23599999999999999999999989
Q ss_pred cCCcEEEEEECCCc---cc---HhhhccccEEEeChhhH--HHHHhhc---CCCccccceeEEEEecccccc-cC-Cch-
Q 000324 576 MYDVKVRELSGDQT---LT---RQQIEETQIIVTTPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLLH-DN-RGP- 641 (1665)
Q Consensus 576 ~~gi~V~~ltGd~~---~~---~~~~~~~~IiV~TPekl--d~l~r~~---~~~~~l~~v~liIiDEaH~l~-d~-rg~- 641 (1665)
.+|++|+..+++.. .. ++....++|+++||+.+ |.+..+. .....+..+.++|+||||.++ |+ |-|
T Consensus 137 ~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpl 216 (762)
T TIGR03714 137 WLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPL 216 (762)
T ss_pred hcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCe
Confidence 99999999887632 22 22345899999999997 5553331 122356789999999999873 21 211
Q ss_pred ----------HHHHHHHHHHHHHhhc-----cCCe---------------------------------------------
Q 000324 642 ----------VLESIVARTVRQIETT-----KEHI--------------------------------------------- 661 (1665)
Q Consensus 642 ----------~le~iv~r~~~~~~~~-----~~~~--------------------------------------------- 661 (1665)
.+-..+.++.+.+... ...-
T Consensus 217 iisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~ 296 (762)
T TIGR03714 217 VISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFK 296 (762)
T ss_pred eeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHh
Confidence 1111111121111000 0011
Q ss_pred ----------------------------------------------------------------eEEEEcccCCChHHHH
Q 000324 662 ----------------------------------------------------------------RLVGLSATLPNYEDVA 677 (1665)
Q Consensus 662 ----------------------------------------------------------------riV~lSATl~n~~dv~ 677 (1665)
++.|||.|... .-.
T Consensus 297 ~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~--~~~ 374 (762)
T TIGR03714 297 RNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKV--AEK 374 (762)
T ss_pred cCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChh--HHH
Confidence 33444444321 112
Q ss_pred HHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHHHHHHHHHHHHH-HhCCCeEEEEecChhHHHHHHHHHHHH
Q 000324 678 LFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVHSRKETAKTARAIRDT 756 (1665)
Q Consensus 678 ~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~vLVFv~sr~~~~~~a~~L~~~ 756 (1665)
+|.... .--+..-|..+|+.....--.+.. ....++.++.. .+.+ +..+.|+||||+|+..++.++..|...
T Consensus 375 Ef~~iY--~l~v~~IPt~kp~~r~d~~d~i~~-~~~~K~~ai~~----~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~ 447 (762)
T TIGR03714 375 EFIETY--SLSVVKIPTNKPIIRIDYPDKIYA-TLPEKLMATLE----DVKEYHETGQPVLLITGSVEMSEIYSELLLRE 447 (762)
T ss_pred HHHHHh--CCCEEEcCCCCCeeeeeCCCeEEE-CHHHHHHHHHH----HHHHHhhCCCCEEEEECcHHHHHHHHHHHHHC
Confidence 222211 001122333444322211000000 11223333322 2222 244789999999999999999999876
Q ss_pred hhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCC
Q 000324 757 ALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNL 836 (1665)
Q Consensus 757 ~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdl 836 (1665)
+.. +.++||.+.+.+|..+...++.| +|+|||+.++||+|+
T Consensus 448 gi~-------------------------------------~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI 488 (762)
T TIGR03714 448 GIP-------------------------------------HNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDI 488 (762)
T ss_pred CCC-------------------------------------EEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCC
Confidence 532 45569999999998888877777 799999999999999
Q ss_pred C---------ceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcHH----------HHHHh
Q 000324 837 P---------AHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR----------YYLSL 897 (1665)
Q Consensus 837 P---------~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~----------~y~~l 897 (1665)
| ++.|||+ |++++ ...+ .||+|||||.| .+|.++.+++.++.- .+...
T Consensus 489 ~l~~~v~~~GGL~vIit----~~~ps------~rid-~qr~GRtGRqG--~~G~s~~~is~eD~l~~~~~~~~~~~~~~~ 555 (762)
T TIGR03714 489 KLGKGVAELGGLAVIGT----ERMEN------SRVD-LQLRGRSGRQG--DPGSSQFFVSLEDDLIKRWSPSWLKKYYKK 555 (762)
T ss_pred CCCccccccCCeEEEEe----cCCCC------cHHH-HHhhhcccCCC--CceeEEEEEccchhhhhhcchHHHHHHHHH
Confidence 9 9999999 88886 3445 99999999988 889999988875421 12222
Q ss_pred hc--C----CCccccchhHhhHHH
Q 000324 898 MN--Q----QLPIESQFVSKLADQ 915 (1665)
Q Consensus 898 l~--~----~~piES~l~~~l~d~ 915 (1665)
+. + ..||++.+.....++
T Consensus 556 ~~~~~~~~~~~~i~~~~~~~~i~~ 579 (762)
T TIGR03714 556 YSVKDSKLKPSALFKRRFRKIVEK 579 (762)
T ss_pred cCCCcccccCcccccHHHHHHHHH
Confidence 21 1 267888876655444
No 134
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=7.3e-26 Score=261.86 Aligned_cols=312 Identities=18% Similarity=0.189 Sum_probs=200.4
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhc----CCCCeEEEEEcccHHHHHHHHHHHHHH
Q 000324 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS----ETGVMRAVYIAPLEALAKERYRDWEIK 1413 (1665)
Q Consensus 1338 ~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~----~~~~~r~l~I~PtreLa~Q~~~~~~~~ 1413 (1665)
+|..||.+|+|+||.+++++| ++|.|+||||||++|++|+++.+.... ...|+-+||||||||||.|+|+.+++.
T Consensus 156 ~i~~pTsVQkq~IP~lL~grD-~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKL 234 (708)
T KOG0348|consen 156 KISAPTSVQKQAIPVLLEGRD-ALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKL 234 (708)
T ss_pred ccCccchHhhcchhhhhcCcc-eEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHH
Confidence 599999999999999999888 999999999999999999999998743 233579999999999999999999965
Q ss_pred hcCCCCcEEEEEeCCCccc---hhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCC-chhHHHHHH
Q 000324 1414 FGQGLGMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVS 1489 (1665)
Q Consensus 1414 ~~~~~~i~v~~l~G~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~-g~~~e~~~s 1489 (1665)
+....=+--+.+.||.... .++.++.+|+|+||||+.+++.+... ..+++++++|+||+|+|++.+ +..+..++.
T Consensus 235 l~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~-i~~s~LRwlVlDEaDrlleLGfekdit~Il~ 313 (708)
T KOG0348|consen 235 LKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKS-IKFSRLRWLVLDEADRLLELGFEKDITQILK 313 (708)
T ss_pred hcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccch-heeeeeeEEEecchhHHHhccchhhHHHHHH
Confidence 5544323345555654433 45667779999999999999886443 356789999999999999855 667777776
Q ss_pred HHHHHHhh------cCCCCeEEEEcccCCCh-HHHHHHhcccCCcEEec-------CCCC------CccceEEEEeeccc
Q 000324 1490 RMRYIASQ------VENKIRIVALSTSLANA-KDLGEWIGATSHGLFNF-------PPGV------RPVPLEIHIQGVDI 1549 (1665)
Q Consensus 1490 rl~~i~~~------~~~~~riI~lSATl~n~-~dl~~wl~~~~~~~~~f-------~~~~------rpv~l~i~i~~~~~ 1549 (1665)
.+..+... ++...|-+++||||.+. ..++..--..+ -++.. .|.. .++|-.-.+..+.+
T Consensus 314 ~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDp-v~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~i 392 (708)
T KOG0348|consen 314 AVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDP-VYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAI 392 (708)
T ss_pred HHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCc-eeeeccchhhhcCcchhhhhhcCCcccccccccccC
Confidence 66443222 22347889999999874 24443211111 11110 0000 11110000111222
Q ss_pred chh-hHHHHhc-Chh---HHHH-HHHHh--cCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHh
Q 000324 1550 TNF-EARMQAM-TKP---TFTA-IVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFID 1621 (1665)
Q Consensus 1550 ~~~-~~~~~~~-~k~---~~~~-i~~~l--~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~ 1621 (1665)
+.. .+++..+ .+- .+.+ +...+ ....++|||+++...++--+..|......+....++ ....+.+-+
T Consensus 393 PeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~--~~~s~g~~~--- 467 (708)
T KOG0348|consen 393 PEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSG--APDSEGLPP--- 467 (708)
T ss_pred cHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccC--CcccCCChh---
Confidence 211 1111111 011 1111 11111 344579999999999988777775544332111000 000111111
Q ss_pred hhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1622 NIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1622 ~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
-.....+--+||+|++++|..+++.|+.-.--||+|
T Consensus 468 --------l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLc 503 (708)
T KOG0348|consen 468 --------LFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLC 503 (708)
T ss_pred --------hhhcceEEEecCchhHHHHHHHHHhhccccceEEEe
Confidence 123445788999999999999999999988889998
No 135
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=2.6e-26 Score=256.84 Aligned_cols=284 Identities=18% Similarity=0.258 Sum_probs=208.9
Q ss_pred hhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhc----CCCCeEEEEEcccHHHH
Q 000324 1329 NPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS----ETGVMRAVYIAPLEALA 1403 (1665)
Q Consensus 1329 ~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~----~~~~~r~l~I~PtreLa 1403 (1665)
.++++++.. ||.+|+|||+||+|.++.|.| ++.+|.||+|||++|++|-+-|+...+ ...+|.+|+++||++|+
T Consensus 229 pevmenIkK~GFqKPtPIqSQaWPI~LQG~D-liGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLa 307 (629)
T KOG0336|consen 229 PEVMENIKKTGFQKPTPIQSQAWPILLQGID-LIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELA 307 (629)
T ss_pred HHHHHHHHhccCCCCCcchhcccceeecCcc-eEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHH
Confidence 367888877 899999999999999999988 999999999999999999988776532 34457999999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEeCCCccchh---ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCC
Q 000324 1404 KERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG 1480 (1665)
Q Consensus 1404 ~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~ 1480 (1665)
.|+.-..+ ++.- -|.+.++++|+.+.+.+ +-++.+||++||++|.++... ...++.++.++|+||||.|++++
T Consensus 308 lqie~e~~-kysy-ng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~--n~i~l~siTYlVlDEADrMLDMg 383 (629)
T KOG0336|consen 308 LQIEGEVK-KYSY-NGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMD--NVINLASITYLVLDEADRMLDMG 383 (629)
T ss_pred HHHHhHHh-Hhhh-cCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhc--CeeeeeeeEEEEecchhhhhccc
Confidence 99988877 4443 36677777777666532 345669999999999998765 66789999999999999999987
Q ss_pred chhHHHHHHHHHHHHhhcCCCCeEEEEcccCCC-hHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhc
Q 000324 1481 GPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAM 1559 (1665)
Q Consensus 1481 g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n-~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~ 1559 (1665)
|-..++.|.-...++.|+++.|||.|. .+.++.-.-..+..+++ .+..-+.....-+.+-.++-....
T Consensus 384 ------FEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~v--GsLdL~a~~sVkQ~i~v~~d~~k~--- 452 (629)
T KOG0336|consen 384 ------FEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYV--GSLDLVAVKSVKQNIIVTTDSEKL--- 452 (629)
T ss_pred ------ccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEe--cccceeeeeeeeeeEEecccHHHH---
Confidence 445555555566789999999999988 45666554433333332 111111111111111111111111
Q ss_pred ChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEE
Q 000324 1560 TKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYL 1639 (1665)
Q Consensus 1560 ~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~ 1639 (1665)
...+.+....+...++||||.++..|..+..+|+- -+.....+
T Consensus 453 --~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l-----------------------------------~gi~~q~l 495 (629)
T KOG0336|consen 453 --EIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCL-----------------------------------KGISSQSL 495 (629)
T ss_pred --HHHHHHHHhcCCCceEEEEEechhhhhhccchhhh-----------------------------------cccchhhc
Confidence 23334444547788999999999988888877631 23445689
Q ss_pred cCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1640 HEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1640 H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
||+-.+.||...++.|++|+++|||+
T Consensus 496 HG~r~Q~DrE~al~~~ksG~vrILva 521 (629)
T KOG0336|consen 496 HGNREQSDREMALEDFKSGEVRILVA 521 (629)
T ss_pred cCChhhhhHHHHHHhhhcCceEEEEE
Confidence 99999999999999999999999984
No 136
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=1e-25 Score=288.46 Aligned_cols=298 Identities=29% Similarity=0.475 Sum_probs=227.3
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000324 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~ 1419 (1665)
..+-++|++++..+-. +++|+||||||||||++++.|+...+.. +. +++|.+|.+||.+|.+.++..+|++. -
T Consensus 118 F~LD~fQ~~a~~~Ler-~esVlV~ApTssGKTvVaeyAi~~al~~---~q--rviYTsPIKALsNQKyrdl~~~fgdv-~ 190 (1041)
T COG4581 118 FELDPFQQEAIAILER-GESVLVCAPTSSGKTVVAEYAIALALRD---GQ--RVIYTSPIKALSNQKYRDLLAKFGDV-A 190 (1041)
T ss_pred CCcCHHHHHHHHHHhC-CCcEEEEccCCCCcchHHHHHHHHHHHc---CC--ceEeccchhhhhhhHHHHHHHHhhhh-h
Confidence 3689999999998866 5569999999999999999999988877 33 89999999999999999999999854 2
Q ss_pred cEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCC-CCchhHHHHHHHHHHHHhhc
Q 000324 1420 MRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQV 1498 (1665)
Q Consensus 1420 i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~-~~g~~~e~~~srl~~i~~~~ 1498 (1665)
-.++.+||+.+.+ ..+.++|.|.|.+-+++.+ ....+..+..||+||+|.|++ ++|.+||.++- .+
T Consensus 191 ~~vGL~TGDv~IN----~~A~clvMTTEILRnMlyr--g~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii-------~l 257 (1041)
T COG4581 191 DMVGLMTGDVSIN----PDAPCLVMTTEILRNMLYR--GSESLRDIEWVVFDEVHYIGDRERGVVWEEVII-------LL 257 (1041)
T ss_pred hhccceecceeeC----CCCceEEeeHHHHHHHhcc--CcccccccceEEEEeeeeccccccchhHHHHHH-------hc
Confidence 3468999988776 6789999999999999877 556789999999999999998 66999998763 45
Q ss_pred CCCCeEEEEcccCCChHHHHHHhcccC-CcEEecCCCCCccceEEEEeec-------cc------chhhHHHHhcC----
Q 000324 1499 ENKIRIVALSTSLANAKDLGEWIGATS-HGLFNFPPGVRPVPLEIHIQGV-------DI------TNFEARMQAMT---- 1560 (1665)
Q Consensus 1499 ~~~~riI~lSATl~n~~dl~~wl~~~~-~~~~~f~~~~rpv~l~i~i~~~-------~~------~~~~~~~~~~~---- 1560 (1665)
+..+|+|+||||++|+.++++|++... ..++.+....||+|++.++..- +. .++.+-+....
T Consensus 258 P~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~ 337 (1041)
T COG4581 258 PDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSE 337 (1041)
T ss_pred CCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccch
Confidence 888999999999999999999998664 4566677888999999887432 00 11110000000
Q ss_pred -------------------------hhH-HHHHHHHh--cCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCC
Q 000324 1561 -------------------------KPT-FTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWP 1612 (1665)
Q Consensus 1561 -------------------------k~~-~~~i~~~l--~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~ 1612 (1665)
.+. ...+..++ ...-|+|+||-|++.|+..|..+...-.....+
T Consensus 338 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~-------- 409 (1041)
T COG4581 338 KVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEE-------- 409 (1041)
T ss_pred hccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCc--------
Confidence 000 01122221 345689999999999999998885433222222
Q ss_pred ccc-chhhH----hhh---------hHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1613 AEE-VEPFI----DNI---------QEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1613 ~~~-l~~~~----~~i---------~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
.+. +..++ ..+ +-..+...|..|+++||+||-+..|..|+++|..|-++||+.
T Consensus 410 ~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFa 476 (1041)
T COG4581 410 KERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFA 476 (1041)
T ss_pred HHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEee
Confidence 222 22222 222 224567788999999999999999999999999999999974
No 137
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.94 E-value=3.6e-25 Score=285.73 Aligned_cols=272 Identities=18% Similarity=0.296 Sum_probs=193.7
Q ss_pred cccchhHHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHH
Q 000324 1325 TALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (1665)
Q Consensus 1325 ~~L~~~~~~~l~~~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~ 1404 (1665)
..+..+.++..| ||..|+|+|.++++.++++++ ++++||||+|||+||++|++.. .+ .+|||+|+++|+.
T Consensus 10 ~~~~~~~l~~~f-G~~~~r~~Q~~ai~~il~g~d-vlv~apTGsGKTl~y~lpal~~------~g--~tlVisPl~sL~~ 79 (607)
T PRK11057 10 ESLAKQVLQETF-GYQQFRPGQQEIIDAVLSGRD-CLVVMPTGGGKSLCYQIPALVL------DG--LTLVVSPLISLMK 79 (607)
T ss_pred hhHHHHHHHHHc-CCCCCCHHHHHHHHHHHcCCC-EEEEcCCCchHHHHHHHHHHHc------CC--CEEEEecHHHHHH
Confidence 334455666666 599999999999999999776 9999999999999999999832 33 7999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEeCCCccchh-----cc--CCCcEEEEChhhHHH--HHHhhhccccCCCccEEEeecccc
Q 000324 1405 ERYRDWEIKFGQGLGMRVVELTGETAMDLK-----LL--EKGQIIISTPEKWDA--LSRRWKQRKYVQQVSLFIIDELHL 1475 (1665)
Q Consensus 1405 Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~-----~l--~~~~IIV~TPe~l~~--l~r~~~~~~~l~~v~llViDEaH~ 1475 (1665)
|+...++. + |+.+..+.+..+.+.. .+ ...+++++||+++.. +... ....++++|||||||+
T Consensus 80 dqv~~l~~-~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~----l~~~~l~~iVIDEaH~ 150 (607)
T PRK11057 80 DQVDQLLA-N----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEH----LAHWNPALLAVDEAHC 150 (607)
T ss_pred HHHHHHHH-c----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHH----HhhCCCCEEEEeCccc
Confidence 99998873 2 5777778777654421 11 235899999999863 2222 2235789999999999
Q ss_pred cCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh--HHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhh
Q 000324 1476 IGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFE 1553 (1665)
Q Consensus 1476 l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~--~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~ 1553 (1665)
+..+ |..++..+..+..+...+ ++.+++++|||+++. .++..+++.....++ .....||. +...+... ..
T Consensus 151 i~~~-G~~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~-~~~~~r~n-l~~~v~~~--~~-- 222 (607)
T PRK11057 151 ISQW-GHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSFDRPN-IRYTLVEK--FK-- 222 (607)
T ss_pred cccc-cCcccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEE-ECCCCCCc-ceeeeeec--cc--
Confidence 9753 445555555565555444 478899999999874 367788776543332 22223332 11111100 00
Q ss_pred HHHHhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhc
Q 000324 1554 ARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLR 1633 (1665)
Q Consensus 1554 ~~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~ 1633 (1665)
. .......+ .. ..++++||||+|+++|+.++..|. ..+
T Consensus 223 -~----~~~l~~~l-~~-~~~~~~IIFc~tr~~~e~la~~L~-----------------------------------~~g 260 (607)
T PRK11057 223 -P----LDQLMRYV-QE-QRGKSGIIYCNSRAKVEDTAARLQ-----------------------------------SRG 260 (607)
T ss_pred -h----HHHHHHHH-Hh-cCCCCEEEEECcHHHHHHHHHHHH-----------------------------------hCC
Confidence 0 01111112 22 356789999999999999998873 235
Q ss_pred ccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1634 HGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1634 ~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
..++.|||+|++.+|..+++.|++|.++||||
T Consensus 261 ~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVa 292 (607)
T PRK11057 261 ISAAAYHAGLDNDVRADVQEAFQRDDLQIVVA 292 (607)
T ss_pred CCEEEecCCCCHHHHHHHHHHHHCCCCCEEEE
Confidence 56899999999999999999999999999997
No 138
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.94 E-value=1.2e-26 Score=268.99 Aligned_cols=297 Identities=20% Similarity=0.249 Sum_probs=202.9
Q ss_pred ccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhc---------CCCCeE--E
Q 000324 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS---------ETGVMR--A 1393 (1665)
Q Consensus 1326 ~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~---------~~~~~r--~ 1393 (1665)
.|+.+++++|-. ||..|+|||+.++|.+..++-+|+..|.||||||+||-+||+..+.... ...+++ +
T Consensus 187 ~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~ 266 (731)
T KOG0347|consen 187 FLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIA 266 (731)
T ss_pred CCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCccee
Confidence 455678888866 9999999999999999999777999999999999999999998554421 112234 9
Q ss_pred EEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccch--hcc-CCCcEEEEChhhHHHHHHhhhc-cccCCCccEEE
Q 000324 1394 VYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL--KLL-EKGQIIISTPEKWDALSRRWKQ-RKYVQQVSLFI 1469 (1665)
Q Consensus 1394 l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~--~~l-~~~~IIV~TPe~l~~l~r~~~~-~~~l~~v~llV 1469 (1665)
||++||||||.|+.+.+. ......++++..++||.+... +++ ..++|||||||||..++..... ...+..+.++|
T Consensus 267 LV~tPTRELa~QV~~Hl~-ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLV 345 (731)
T KOG0347|consen 267 LVVTPTRELAHQVKQHLK-AIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLV 345 (731)
T ss_pred EEecChHHHHHHHHHHHH-HhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEE
Confidence 999999999999999999 677789999999999988752 333 4679999999999988875332 34678899999
Q ss_pred eecccccCCCCchhHHHHHHHHHHHH-hhcCCCCeEEEEcccCCChH--HHHHHhcccCCc------------EEecCCC
Q 000324 1470 IDELHLIGGQGGPVLEVIVSRMRYIA-SQVENKIRIVALSTSLANAK--DLGEWIGATSHG------------LFNFPPG 1534 (1665)
Q Consensus 1470 iDEaH~l~~~~g~~~e~~~srl~~i~-~~~~~~~riI~lSATl~n~~--dl~~wl~~~~~~------------~~~f~~~ 1534 (1665)
+||+|+|...+ +++.+-.-+..+. .+.....|.+.||||+.-.. .+..-....... ...|.
T Consensus 346 lDEaDRmvekg--hF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~-- 421 (731)
T KOG0347|consen 346 LDEADRMVEKG--HFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFR-- 421 (731)
T ss_pred EccHHHHhhhc--cHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCcc--
Confidence 99999998766 3444444444443 45557789999999986421 111110000000 00011
Q ss_pred CCccceEEEEeecccch-hhHHHHhc--ChhH--HHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccc
Q 000324 1535 VRPVPLEIHIQGVDITN-FEARMQAM--TKPT--FTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFL 1609 (1665)
Q Consensus 1535 ~rpv~l~i~i~~~~~~~-~~~~~~~~--~k~~--~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l 1609 (1665)
..|.-+...-+.-.... ...++... .+.. |..|.. --+++|||||+..-+..++..|
T Consensus 422 ~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~r---yPGrTlVF~NsId~vKRLt~~L--------------- 483 (731)
T KOG0347|consen 422 GKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTR---YPGRTLVFCNSIDCVKRLTVLL--------------- 483 (731)
T ss_pred CCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEee---cCCceEEEechHHHHHHHHHHH---------------
Confidence 11211111111100000 01111100 0000 001111 1356999999999999999776
Q ss_pred cCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1610 LWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1610 ~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
..+...--.+|+.|.++.|...++.|++..--||||
T Consensus 484 --------------------~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLia 519 (731)
T KOG0347|consen 484 --------------------NNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIA 519 (731)
T ss_pred --------------------hhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEe
Confidence 234455568999999999999999999999999998
No 139
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=1.4e-25 Score=258.25 Aligned_cols=285 Identities=21% Similarity=0.279 Sum_probs=190.5
Q ss_pred CCCCCCHHHHHHHHHHHcC--------CCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHH
Q 000324 1338 GFKHFNPIQTQVFTVLYNT--------DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (1665)
Q Consensus 1338 ~f~~~~~iQ~qa~~~ll~~--------~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~ 1409 (1665)
+++...|+|.+++|.++.. ..+|.|.||||||||+||.+||++.+... +-..+|||||+||++|+.|++..
T Consensus 156 ~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R-~v~~LRavVivPtr~L~~QV~~~ 234 (620)
T KOG0350|consen 156 AISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSR-PVKRLRAVVIVPTRELALQVYDT 234 (620)
T ss_pred hcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccC-CccceEEEEEeeHHHHHHHHHHH
Confidence 5899999999999999641 23499999999999999999999999884 33447999999999999999999
Q ss_pred HHHHhcCCCCcEEEEEeCCCccch---hccC-----CCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCC-
Q 000324 1410 WEIKFGQGLGMRVVELTGETAMDL---KLLE-----KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG- 1480 (1665)
Q Consensus 1410 ~~~~~~~~~~i~v~~l~G~~~~~~---~~l~-----~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~- 1480 (1665)
|. ++....|+.|+.++|..+... ++.. ..||+|+||+||.++++.. ....+++++++||||||+|++..
T Consensus 235 f~-~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~-k~f~Lk~LrfLVIDEADRll~qsf 312 (620)
T KOG0350|consen 235 FK-RLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNT-KSFDLKHLRFLVIDEADRLLDQSF 312 (620)
T ss_pred HH-HhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCC-CCcchhhceEEEechHHHHHHHHH
Confidence 99 788888999999999877652 2221 3389999999999999863 35678999999999999997532
Q ss_pred ---chhHHHHHHHHH------HHHhh------------------cCCCCeEEEEcccCCC-hHHHHHHhcccCCcEEecC
Q 000324 1481 ---GPVLEVIVSRMR------YIASQ------------------VENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFP 1532 (1665)
Q Consensus 1481 ---g~~~e~~~srl~------~i~~~------------------~~~~~riI~lSATl~n-~~dl~~wl~~~~~~~~~f~ 1532 (1665)
=+.....+..++ .+..+ ..++.+.+.+|||+.. +..+.+ +......++...
T Consensus 313 Q~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~-l~l~~Prl~~v~ 391 (620)
T KOG0350|consen 313 QEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKD-LTLHIPRLFHVS 391 (620)
T ss_pred HHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhh-hhcCCCceEEee
Confidence 111111111110 11110 1123446667777754 222222 211111222211
Q ss_pred CCCCccceEEEEeecccchhhHH----HHhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCccccc
Q 000324 1533 PGVRPVPLEIHIQGVDITNFEAR----MQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAF 1608 (1665)
Q Consensus 1533 ~~~rpv~l~i~i~~~~~~~~~~~----~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~ 1608 (1665)
. | .+..+..+..... .....+|.+..-+-+.....++|+|++|..++..++..|.-..
T Consensus 392 ~---~-----~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~---------- 453 (620)
T KOG0350|consen 392 K---P-----LIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEF---------- 453 (620)
T ss_pred c---c-----cceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHh----------
Confidence 0 0 0011111111111 1111233333322232567789999999999999998884211
Q ss_pred ccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1609 LLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1609 l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
......+..+.|+++.+.|...++.|..|.|+||||
T Consensus 454 ---------------------~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIc 489 (620)
T KOG0350|consen 454 ---------------------CSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLIC 489 (620)
T ss_pred ---------------------ccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEe
Confidence 112334566899999999999999999999999999
No 140
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=3.4e-25 Score=277.67 Aligned_cols=343 Identities=20% Similarity=0.210 Sum_probs=214.0
Q ss_pred EEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhh
Q 000324 515 LLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ 594 (1665)
Q Consensus 515 lv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~ 594 (1665)
|+.||||||||.+|+.++...+.. +.+++|++|+++|+.|++++|++.+ |.++..++|+.+...+.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~-----------g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~ 66 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL-----------GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKL 66 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc-----------CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHH
Confidence 578999999999998777666543 3479999999999999999999876 56788999987654321
Q ss_pred -------hccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc--CCchHHHHH-HHHHHHHHhhccCCeeEE
Q 000324 595 -------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD--NRGPVLESI-VARTVRQIETTKEHIRLV 664 (1665)
Q Consensus 595 -------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d--~rg~~le~i-v~r~~~~~~~~~~~~riV 664 (1665)
....+|+|+|+..+ . ..+.++++|||||+|.... ..+|.+..- ++.+ .....+.++|
T Consensus 67 ~~~~~~~~g~~~IVVGTrsal---f------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~----ra~~~~~~vi 133 (505)
T TIGR00595 67 QAWRKVKNGEILVVIGTRSAL---F------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVY----RAKKFNCPVV 133 (505)
T ss_pred HHHHHHHcCCCCEEECChHHH---c------CcccCCCEEEEECCCccccccccCCCCcHHHHHHH----HHHhcCCCEE
Confidence 13679999999843 1 2467899999999998753 334443210 1111 1234578999
Q ss_pred EEcccCCChHHHHHHHhccccCceEEecCCC--ccccceEEEEeeecCchhHHHHHHHHHHHHHHHHHhC-CCeEEEEec
Q 000324 665 GLSATLPNYEDVALFLRVNLEKGLFYFDNSY--RPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAG-KHQVLIFVH 741 (1665)
Q Consensus 665 ~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~--rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~vLVFv~ 741 (1665)
++||| |..+.......... ........+ ++.| ...++...... . ...+...+++.+.+... ++|+|||+|
T Consensus 134 l~SAT-Psles~~~~~~g~~--~~~~l~~r~~~~~~p-~v~vid~~~~~--~-~~~ls~~l~~~i~~~l~~g~qvLvfln 206 (505)
T TIGR00595 134 LGSAT-PSLESYHNAKQKAY--RLLVLTRRVSGRKPP-EVKLIDMRKEP--R-QSFLSPELITAIEQTLAAGEQSILFLN 206 (505)
T ss_pred EEeCC-CCHHHHHHHhcCCe--EEeechhhhcCCCCC-eEEEEeccccc--c-cCCccHHHHHHHHHHHHcCCcEEEEEe
Confidence 99999 66555544432110 111111111 1111 22233222111 0 01233445555555444 679999999
Q ss_pred ChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhh----------hccc--------------cchhhhhcC-Cc
Q 000324 742 SRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHT----------DMVK--------------SNDLKDLLP-YG 796 (1665)
Q Consensus 742 sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~----------~~~~--------------~~~l~~ll~-~g 796 (1665)
+|..+-.+...=+.....+...+..+..+.......+..+ ..+. .+.|+..++ ..
T Consensus 207 rrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~ 286 (505)
T TIGR00595 207 RRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGAR 286 (505)
T ss_pred CCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCc
Confidence 9987654444333333333322222211111111111111 0111 234555554 57
Q ss_pred EEEecCCCCHHHH--HHHHHHHhCCCCCeEEeccccccccCCCceEEE--EecccccCCCCCCcccCCHHHHHhhhcccC
Q 000324 797 FAIHHAGMTRGDR--QLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVI--IKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (1665)
Q Consensus 797 v~~~Hagm~~~dR--~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vV--I~~t~~yd~~~g~~~~~s~~~~~Qr~GRAG 872 (1665)
|...|+.++...+ +.+++.|++|+.+|||+|+.+++|+|+|++++| ++.+...+.+..+-.+-....|+|++||||
T Consensus 287 v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRag 366 (505)
T TIGR00595 287 IARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAG 366 (505)
T ss_pred EEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccC
Confidence 8899999987766 899999999999999999999999999999876 454433333433334446788999999999
Q ss_pred CCCCCCceEEEEEeCCCcHHH
Q 000324 873 RPQYDSYGEGIIITGHSELRY 893 (1665)
Q Consensus 873 R~g~d~~G~~iil~~~~~~~~ 893 (1665)
|.+ ..|.+++.+...+...
T Consensus 367 R~~--~~g~viiqt~~p~~~~ 385 (505)
T TIGR00595 367 RAE--DPGQVIIQTYNPNHPA 385 (505)
T ss_pred CCC--CCCEEEEEeCCCCCHH
Confidence 966 7899998887765433
No 141
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=5.6e-26 Score=256.72 Aligned_cols=286 Identities=21% Similarity=0.295 Sum_probs=220.6
Q ss_pred CcccccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccH
Q 000324 1322 LPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLE 1400 (1665)
Q Consensus 1322 ~~~~~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~Ptr 1400 (1665)
++.-+|....++++.. ||+.|+|||.+++|.++.+.+ ++..|-||||||.||.+|++.++.... ..+.|++++.||+
T Consensus 23 fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~d-vv~martgsgktaaf~ipm~e~Lk~~s-~~g~Ralilsptr 100 (529)
T KOG0337|consen 23 FQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRD-VVGMARTGSGKTAAFLIPMIEKLKSHS-QTGLRALILSPTR 100 (529)
T ss_pred ccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccc-cceeeecCCcchhhHHHHHHHHHhhcc-ccccceeeccCcH
Confidence 3445677888899887 899999999999999999888 999999999999999999999999865 5667999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchh---ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccC
Q 000324 1401 ALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1401 eLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~ 1477 (1665)
+|+.|+.+..+ .++...+++..+++|+.+...+ +..++|||+|||+++..+.-. -...++.|.+||+||+|.|.
T Consensus 101 eLa~qtlkvvk-dlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~ve--m~l~l~sveyVVfdEadrlf 177 (529)
T KOG0337|consen 101 ELALQTLKVVK-DLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVE--MTLTLSSVEYVVFDEADRLF 177 (529)
T ss_pred HHHHHHHHHHH-HhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehh--eeccccceeeeeehhhhHHH
Confidence 99999999888 8999899999988887766533 445789999999998766543 23458899999999999998
Q ss_pred CCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCChHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHH
Q 000324 1478 GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQ 1557 (1665)
Q Consensus 1478 ~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~ 1557 (1665)
+++ +..++..+.++++...|.++||||+|+. +.++-... ...|+.+.+.+..--......+..
T Consensus 178 emg------fqeql~e~l~rl~~~~QTllfSatlp~~--lv~fakaG---------l~~p~lVRldvetkise~lk~~f~ 240 (529)
T KOG0337|consen 178 EMG------FQEQLHEILSRLPESRQTLLFSATLPRD--LVDFAKAG---------LVPPVLVRLDVETKISELLKVRFF 240 (529)
T ss_pred hhh------hHHHHHHHHHhCCCcceEEEEeccCchh--hHHHHHcc---------CCCCceEEeehhhhcchhhhhhee
Confidence 776 7888889999999999999999999875 33333221 113333333322221122222222
Q ss_pred hcChh----HHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhc
Q 000324 1558 AMTKP----TFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLR 1633 (1665)
Q Consensus 1558 ~~~k~----~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~ 1633 (1665)
...+. ++..++......++++|||+|+.+++.+..-| ...+
T Consensus 241 ~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll-----------------------------------~~~g 285 (529)
T KOG0337|consen 241 RVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLL-----------------------------------RDFG 285 (529)
T ss_pred eeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHH-----------------------------------HhcC
Confidence 22221 22223332233457999999999999888665 3467
Q ss_pred ccEEEEcCCCCHHHHHHHHHHHhcCCceEEE
Q 000324 1634 HGVGYLHEGLNKTDQEVVSALFEAGKIKICY 1664 (1665)
Q Consensus 1634 ~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLV 1664 (1665)
.++..++|.|.+.-|..-...|+.|+..+||
T Consensus 286 ~~~s~iysslD~~aRk~~~~~F~~~k~~~lv 316 (529)
T KOG0337|consen 286 GEGSDIYSSLDQEARKINGRDFRGRKTSILV 316 (529)
T ss_pred CCccccccccChHhhhhccccccCCccceEE
Confidence 7788999999999999999999999999887
No 142
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=3.1e-25 Score=264.47 Aligned_cols=297 Identities=26% Similarity=0.439 Sum_probs=223.9
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000324 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i 1420 (1665)
.+-|+|.+++.++=+ +++|+|+|.|.+|||++|+.||...+.. +. |++|-.|.++|.+|.|+++...|+
T Consensus 129 ~LDpFQ~~aI~Cidr-~eSVLVSAHTSAGKTVVAeYAIA~sLr~---kQ--RVIYTSPIKALSNQKYREl~~EF~----- 197 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDR-GESVLVSAHTSAGKTVVAEYAIAMSLRE---KQ--RVIYTSPIKALSNQKYRELLEEFK----- 197 (1041)
T ss_pred ccCchHhhhhhhhcC-CceEEEEeecCCCcchHHHHHHHHHHHh---cC--eEEeeChhhhhcchhHHHHHHHhc-----
Confidence 688999999988855 5669999999999999999999999887 33 999999999999999999999997
Q ss_pred EEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCC-CCchhHHHHHHHHHHHHhhcC
Q 000324 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQVE 1499 (1665)
Q Consensus 1421 ~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~-~~g~~~e~~~srl~~i~~~~~ 1499 (1665)
.|+++||+.+.+ ..+..+|.|.|.|.+++.+ +...++.|.+||+||+|-|-+ .+|-+||.-+- .+|
T Consensus 198 DVGLMTGDVTIn----P~ASCLVMTTEILRsMLYR--GSEvmrEVaWVIFDEIHYMRDkERGVVWEETII-------llP 264 (1041)
T KOG0948|consen 198 DVGLMTGDVTIN----PDASCLVMTTEILRSMLYR--GSEVMREVAWVIFDEIHYMRDKERGVVWEETII-------LLP 264 (1041)
T ss_pred ccceeecceeeC----CCCceeeeHHHHHHHHHhc--cchHhheeeeEEeeeehhccccccceeeeeeEE-------ecc
Confidence 589999998876 5678999999999998876 667789999999999999977 67999987441 358
Q ss_pred CCCeEEEEcccCCChHHHHHHhcccC-CcEEecCCCCCccceEEEEee---------------cccchhhHHHHhcCh--
Q 000324 1500 NKIRIVALSTSLANAKDLGEWIGATS-HGLFNFPPGVRPVPLEIHIQG---------------VDITNFEARMQAMTK-- 1561 (1665)
Q Consensus 1500 ~~~riI~lSATl~n~~dl~~wl~~~~-~~~~~f~~~~rpv~l~i~i~~---------------~~~~~~~~~~~~~~k-- 1561 (1665)
.++++|+||||+||+.++|+|+-... ..+..+=...||.|+..++.. |...++...|....+
T Consensus 265 ~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~ 344 (1041)
T KOG0948|consen 265 DNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAG 344 (1041)
T ss_pred ccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccC
Confidence 99999999999999999999986543 333333457799999877532 222233333332211
Q ss_pred -------------------------hHHHHHHHHh-cCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCccc
Q 000324 1562 -------------------------PTFTAIVQHA-KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEE 1615 (1665)
Q Consensus 1562 -------------------------~~~~~i~~~l-~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~ 1615 (1665)
..+..+..-. ....|+|||+-|++.|+..|..+.+.-..+..++... .+-
T Consensus 345 ~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V----~~i 420 (1041)
T KOG0948|consen 345 ESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELV----ETI 420 (1041)
T ss_pred CCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHH----HHH
Confidence 1122222111 3467899999999999999999865544433332200 000
Q ss_pred chhhHhhhh--------HHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1616 VEPFIDNIQ--------EEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1616 l~~~~~~i~--------d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
....++.+. -++....+..|||+||+||-+--+..|+-+|.+|-++||++
T Consensus 421 F~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFA 478 (1041)
T KOG0948|consen 421 FNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFA 478 (1041)
T ss_pred HHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHh
Confidence 011111111 13456678999999999999999999999999999999874
No 143
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.93 E-value=8.6e-26 Score=251.08 Aligned_cols=282 Identities=18% Similarity=0.249 Sum_probs=216.4
Q ss_pred chhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhh------cCCCCeEEEEEcccH
Q 000324 1328 RNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA------SETGVMRAVYIAPLE 1400 (1665)
Q Consensus 1328 ~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~------~~~~~~r~l~I~Ptr 1400 (1665)
+.++++.+.. |+.+|||||.|-+|.++.|+| .+..|-||||||++|.||++....+. ..+.+|..|||||+|
T Consensus 178 P~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRD-mIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSR 256 (610)
T KOG0341|consen 178 PKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRD-MIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSR 256 (610)
T ss_pred CHHHHHHHHhcCCCCCCceeecCcceEeecCc-eeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcH
Confidence 3566777766 899999999999999999998 99999999999999999998765553 134467999999999
Q ss_pred HHHHHHHHHHHHHhcC-----CCCcEEEEEeCCCccchh---ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeec
Q 000324 1401 ALAKERYRDWEIKFGQ-----GLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDE 1472 (1665)
Q Consensus 1401 eLa~Q~~~~~~~~~~~-----~~~i~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDE 1472 (1665)
|||.|++..+...+.. ...++...+.|+.+...+ ...+.||+|+||++|.+++.. ...++.-++++++||
T Consensus 257 ELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K--K~~sLd~CRyL~lDE 334 (610)
T KOG0341|consen 257 ELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK--KIMSLDACRYLTLDE 334 (610)
T ss_pred HHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH--hhccHHHHHHhhhhh
Confidence 9999999988744432 134678888898876633 334559999999999999875 556788899999999
Q ss_pred ccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh-HHHHHHhcccCCcEEecCCCCCccceEEEEeecccch
Q 000324 1473 LHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITN 1551 (1665)
Q Consensus 1473 aH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~-~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~ 1551 (1665)
||++.+.+ |-..++.+...+....|.++||||+|.. ..++. +.-+.|+.+.+.--+...-+
T Consensus 335 ADRmiDmG------FEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAk------------SALVKPvtvNVGRAGAAsld 396 (610)
T KOG0341|consen 335 ADRMIDMG------FEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAK------------SALVKPVTVNVGRAGAASLD 396 (610)
T ss_pred HHHHhhcc------chhhHHHHHHHHhhhhheeeeeccccHHHHHHHH------------hhcccceEEecccccccchh
Confidence 99999888 7788888888888999999999999864 22222 23346666666555544444
Q ss_pred hhHHHHhcCh-hHHHHHHHHhcC-CCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHH
Q 000324 1552 FEARMQAMTK-PTFTAIVQHAKN-EKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLK 1629 (1665)
Q Consensus 1552 ~~~~~~~~~k-~~~~~i~~~l~~-~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~ 1629 (1665)
..+....+.. ...-.+++.+.. ..|+||||..+..+..+...|.
T Consensus 397 ViQevEyVkqEaKiVylLeCLQKT~PpVLIFaEkK~DVD~IhEYLL---------------------------------- 442 (610)
T KOG0341|consen 397 VIQEVEYVKQEAKIVYLLECLQKTSPPVLIFAEKKADVDDIHEYLL---------------------------------- 442 (610)
T ss_pred HHHHHHHHHhhhhhhhHHHHhccCCCceEEEeccccChHHHHHHHH----------------------------------
Confidence 4444333322 122334444433 4569999999999988887772
Q ss_pred HHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1630 ATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1630 ~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
.-+..+..+|||-.++||...++.|+.|+-.|||+
T Consensus 443 -lKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVA 477 (610)
T KOG0341|consen 443 -LKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVA 477 (610)
T ss_pred -HccceeEEeecCcchhHHHHHHHHHhcCCCceEEE
Confidence 12445688999999999999999999999999984
No 144
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.93 E-value=3.2e-24 Score=289.09 Aligned_cols=284 Identities=19% Similarity=0.199 Sum_probs=188.4
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000324 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1665)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (1665)
...|+++|+.+++.++.+. +++++||||||||. |.++++..+... +.+++||+||++||.|+++.+..
T Consensus 76 g~~p~~iQ~~~i~~il~G~-d~vi~ApTGsGKT~-f~l~~~~~l~~~----------g~~vLIL~PTreLa~Qi~~~l~~ 143 (1171)
T TIGR01054 76 GSEPWSIQKMWAKRVLRGD-SFAIIAPTGVGKTT-FGLAMSLFLAKK----------GKRCYIILPTTLLVIQVAEKISS 143 (1171)
T ss_pred CCCCcHHHHHHHHHHhCCC-eEEEECCCCCCHHH-HHHHHHHHHHhc----------CCeEEEEeCHHHHHHHHHHHHHH
Confidence 3479999999999998875 59999999999997 556665554331 45899999999999999999999
Q ss_pred hhccCCcEE---EEEECCCcccHhh-----h--ccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc-C---
Q 000324 573 RLQMYDVKV---RELSGDQTLTRQQ-----I--EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N--- 638 (1665)
Q Consensus 573 ~~~~~gi~V---~~ltGd~~~~~~~-----~--~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~--- 638 (1665)
.....|+.+ +.++|+.+...+. + ..++|+|+||+++........ .+++++|+||||.+.+ .
T Consensus 144 l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~-----~~~~~iVvDEaD~~L~~~k~v 218 (1171)
T TIGR01054 144 LAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG-----PKFDFIFVDDVDALLKASKNV 218 (1171)
T ss_pred HHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc-----CCCCEEEEeChHhhhhccccH
Confidence 887766654 3578887655431 1 248999999998643333221 1789999999999976 2
Q ss_pred --------Cch-HHHHHHHHH---------------HHHHhhccCCee--EEEEcccCCChHHHH-HHHhccccCceEEe
Q 000324 639 --------RGP-VLESIVART---------------VRQIETTKEHIR--LVGLSATLPNYEDVA-LFLRVNLEKGLFYF 691 (1665)
Q Consensus 639 --------rg~-~le~iv~r~---------------~~~~~~~~~~~r--iV~lSATl~n~~dv~-~~l~~~~~~~~~~f 691 (1665)
+.+ .++.++..+ .......+...| ++.+|||..+. .+. .+++... .+..
T Consensus 219 d~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~-~~~~~l~r~ll---~~~v 294 (1171)
T TIGR01054 219 DKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPR-GKRAKLFRELL---GFEV 294 (1171)
T ss_pred HHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCcc-ccHHHHccccc---ceEe
Confidence 222 234433211 111112233333 67789994332 122 2222111 1122
Q ss_pred cCCCc-cccceEEEEeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEecCh---hHHHHHHHHHHHHhhhcccccccc
Q 000324 692 DNSYR-PVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSR---KETAKTARAIRDTALENDTLGRFL 767 (1665)
Q Consensus 692 ~~~~r-pv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr---~~~~~~a~~L~~~~~~~~~l~~~~ 767 (1665)
..... .-.+.+.++.... ....+. + ++... +.++||||+++ +.|..++..|...+.
T Consensus 295 ~~~~~~~r~I~~~~~~~~~-----~~~~L~----~-ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~--------- 354 (1171)
T TIGR01054 295 GGGSDTLRNVVDVYVEDED-----LKETLL----E-IVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGV--------- 354 (1171)
T ss_pred cCccccccceEEEEEeccc-----HHHHHH----H-HHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCc---------
Confidence 21111 1123333332111 111111 2 22223 46899999999 999999998876542
Q ss_pred ccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEec----cccccccCCCc-eEEE
Q 000324 768 KEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVST----ATLAWGVNLPA-HTVI 842 (1665)
Q Consensus 768 ~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT----~tla~GVdlP~-v~vV 842 (1665)
.+..+||+|+ ..+++.|++|+++||||| ++++||||+|+ +++|
T Consensus 355 ----------------------------~a~~lhg~~~----~~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~v 402 (1171)
T TIGR01054 355 ----------------------------KAVAYHATKP----KEDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYA 402 (1171)
T ss_pred ----------------------------eEEEEeCCCC----HHHHHHHHcCCCCEEEEeccccCcccccCCCCccccEE
Confidence 3567799997 368899999999999994 89999999999 8999
Q ss_pred EecccccCCCC
Q 000324 843 IKGTQIYNPEK 853 (1665)
Q Consensus 843 I~~t~~yd~~~ 853 (1665)
|+ |+.|+
T Consensus 403 I~----~~~P~ 409 (1171)
T TIGR01054 403 VF----LGVPK 409 (1171)
T ss_pred EE----ECCCC
Confidence 99 99886
No 145
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.93 E-value=7.7e-24 Score=265.71 Aligned_cols=323 Identities=15% Similarity=0.118 Sum_probs=212.7
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (1665)
.++++|..+...+..+ .|..++||+|||++|.+|++-.... +..+.+++|++.||.|.++.+...+
T Consensus 56 ~p~~vQlig~~~l~~G---~Iaem~TGeGKTLva~lpa~l~aL~-----------G~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 56 RPFDVQLIGGIALHKG---KIAEMKTGEGKTLTATLPAYLNALT-----------GKGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred CccchHHhhhhhhcCC---ceeeecCCCccHHHHHHHHHHHHHh-----------CCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 6778888887765443 4999999999999999999543332 2258999999999999999999999
Q ss_pred ccCCcEEEEEECCCcccHh-hhccccEEEeChhhH--HHHHhhc---CCCccccceeEEEEeccccccc--CCchHH---
Q 000324 575 QMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLLHD--NRGPVL--- 643 (1665)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~~-~~~~~~IiV~TPekl--d~l~r~~---~~~~~l~~v~liIiDEaH~l~d--~rg~~l--- 643 (1665)
..+|++|+.++|+.+...+ ....++|+|+||.++ |.+..+. .+...++.+.++||||+|.++- .|.|.+
T Consensus 122 ~~LGLsv~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg 201 (745)
T TIGR00963 122 RFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISG 201 (745)
T ss_pred ccCCCeEEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcC
Confidence 9999999999998775543 334689999999986 6665442 1224567899999999997742 232211
Q ss_pred --------HHHHHHHHHHHhhc-----cCCe-------------------------------------------------
Q 000324 644 --------ESIVARTVRQIETT-----KEHI------------------------------------------------- 661 (1665)
Q Consensus 644 --------e~iv~r~~~~~~~~-----~~~~------------------------------------------------- 661 (1665)
-.....+.+.+... ...-
T Consensus 202 ~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~d 281 (745)
T TIGR00963 202 PAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVD 281 (745)
T ss_pred CCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCc
Confidence 11111121111100 0011
Q ss_pred ------------------------------------------------------------eEEEEcccCCChHHHHHHHh
Q 000324 662 ------------------------------------------------------------RLVGLSATLPNYEDVALFLR 681 (1665)
Q Consensus 662 ------------------------------------------------------------riV~lSATl~n~~dv~~~l~ 681 (1665)
++.|||.|... +-..|..
T Consensus 282 YiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~t--e~~E~~~ 359 (745)
T TIGR00963 282 YIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKT--EEEEFEK 359 (745)
T ss_pred EEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHH--HHHHHHH
Confidence 22333333221 1111111
Q ss_pred ccccCceEEecCCCccccceEEEEeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhcc
Q 000324 682 VNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALEND 761 (1665)
Q Consensus 682 ~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~ 761 (1665)
... - -+..-|..+|+.....--.+. .....++.++. .+....+..+.|+||||+|...++.++..|...+..
T Consensus 360 iY~-l-~vv~IPtnkp~~R~d~~d~i~-~t~~~k~~ai~---~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~-- 431 (745)
T TIGR00963 360 IYN-L-EVVVVPTNRPVIRKDLSDLVY-KTEEEKWKAVV---DEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIP-- 431 (745)
T ss_pred HhC-C-CEEEeCCCCCeeeeeCCCeEE-cCHHHHHHHHH---HHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCC--
Confidence 110 0 011122233321111000000 01112222222 222223445889999999999999999999886533
Q ss_pred ccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCc---
Q 000324 762 TLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPA--- 838 (1665)
Q Consensus 762 ~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~--- 838 (1665)
..++||+ +.+|+..+..|+.+...|+|||+.++||+|++.
T Consensus 432 -----------------------------------~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V 474 (745)
T TIGR00963 432 -----------------------------------HNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEV 474 (745)
T ss_pred -----------------------------------eEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccch
Confidence 3455888 789999999999999999999999999999998
Q ss_pred ----eEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCc
Q 000324 839 ----HTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (1665)
Q Consensus 839 ----v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~ 890 (1665)
..+||. |+.+. |...+.|+.|||||.| ..|.+..+.+..+
T Consensus 475 ~~~GGl~VI~----t~~p~------s~ri~~q~~GRtGRqG--~~G~s~~~ls~eD 518 (745)
T TIGR00963 475 KELGGLYVIG----TERHE------SRRIDNQLRGRSGRQG--DPGSSRFFLSLED 518 (745)
T ss_pred hhcCCcEEEe----cCCCC------cHHHHHHHhccccCCC--CCcceEEEEeccH
Confidence 558998 77766 8889999999999998 7899988887654
No 146
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.93 E-value=3.2e-25 Score=278.15 Aligned_cols=290 Identities=21% Similarity=0.312 Sum_probs=210.7
Q ss_pred ccccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhc---CCCCeEEEEEccc
Q 000324 1324 VTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS---ETGVMRAVYIAPL 1399 (1665)
Q Consensus 1324 ~~~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~---~~~~~r~l~I~Pt 1399 (1665)
..++...+++.+.. ||..++|||.||+|+++.|++ ||.+|-||||||++|.||+++|....+ ...+|.+||++||
T Consensus 369 q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrd-vIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPt 447 (997)
T KOG0334|consen 369 QCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRD-VIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPT 447 (997)
T ss_pred hCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcc-eEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCC
Confidence 35566677788855 799999999999999999998 999999999999999999999987753 2336899999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchh---ccCCCcEEEEChhhHHHHHHhhhcc-ccCCCccEEEeecccc
Q 000324 1400 EALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQR-KYVQQVSLFIIDELHL 1475 (1665)
Q Consensus 1400 reLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~-~~l~~v~llViDEaH~ 1475 (1665)
++|+.|+.+.++ +|.+.+++++++.+|+.....+ +-+++.|+||||++..+++-....+ -++..+.++|+||||+
T Consensus 448 rela~QI~r~~~-kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDr 526 (997)
T KOG0334|consen 448 RELAMQIHREVR-KFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADR 526 (997)
T ss_pred HHHHHHHHHHHH-HHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhh
Confidence 999999999888 8888899999999999876532 3356799999999998876553333 2566677999999999
Q ss_pred cCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh-HHHHHHhcccCCcE-EecCCCC-CccceEEEEeecccchh
Q 000324 1476 IGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGL-FNFPPGV-RPVPLEIHIQGVDITNF 1552 (1665)
Q Consensus 1476 l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~-~dl~~wl~~~~~~~-~~f~~~~-rpv~l~i~i~~~~~~~~ 1552 (1665)
+.+.+ ++. ....|...+++..|++++|||++.. ..++.-+...+..+ +.....+ ..+...+.+.......+
T Consensus 527 mfdmg---feP---q~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf 600 (997)
T KOG0334|consen 527 MFDMG---FEP---QITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKF 600 (997)
T ss_pred hheec---cCc---ccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHH
Confidence 98655 222 2222555567899999999999885 23444433222111 1100000 11122222211111111
Q ss_pred hHHHHhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHh
Q 000324 1553 EARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL 1632 (1665)
Q Consensus 1553 ~~~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l 1632 (1665)
.. +..++.......++||||.+..+|..+..+|+. .
T Consensus 601 ~k---------L~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~-----------------------------------a 636 (997)
T KOG0334|consen 601 LK---------LLELLGERYEDGKTIIFVDKQEKADALLRDLQK-----------------------------------A 636 (997)
T ss_pred HH---------HHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHh-----------------------------------c
Confidence 11 122333335678999999999999999988842 3
Q ss_pred cccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1633 RHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1633 ~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
++.+..+|||.++.+|..+++.|++|.+.+|||
T Consensus 637 g~~~~slHGgv~q~dR~sti~dfK~~~~~LLva 669 (997)
T KOG0334|consen 637 GYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVA 669 (997)
T ss_pred CcchhhhcCCCchHHHHhHHHHHhccCceEEEe
Confidence 444566999999999999999999999999997
No 147
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=2.4e-25 Score=251.84 Aligned_cols=281 Identities=18% Similarity=0.319 Sum_probs=215.4
Q ss_pred cccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHH
Q 000324 1325 TALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403 (1665)
Q Consensus 1325 ~~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa 1403 (1665)
..|++.++..+|+ ||..|+.||+.|+..+..|.+ +++.+++|+|||.+|.+++++.+...... ..+++++|+++|+
T Consensus 31 m~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~d-v~~qaqsgTgKt~af~i~iLq~iD~~~ke--~qalilaPtreLa 107 (397)
T KOG0327|consen 31 MNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHD-VIAQAQSGTGKTAAFLISILQQIDMSVKE--TQALILAPTRELA 107 (397)
T ss_pred cCCCHHHHhHHHhhccCCchHHHhccccccccCCc-eeEeeeccccchhhhHHHHHhhcCcchHH--HHHHHhcchHHHH
Confidence 3566789999999 999999999999999999877 99999999999999999999987653222 3899999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEeCCCccc--hhcc--CCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCC
Q 000324 1404 KERYRDWEIKFGQGLGMRVVELTGETAMD--LKLL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479 (1665)
Q Consensus 1404 ~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~--~~~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~ 1479 (1665)
.|+.+... .++..++.++..+.|+.... ...+ ..++|+|+||+++..++.+ .......++++|+||+|.+++.
T Consensus 108 ~qi~~v~~-~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~--~~l~~~~iKmfvlDEaDEmLs~ 184 (397)
T KOG0327|consen 108 QQIQKVVR-ALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNR--GSLSTDGIKMFVLDEADEMLSR 184 (397)
T ss_pred HHHHHHHH-hhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhcc--ccccccceeEEeecchHhhhcc
Confidence 99998777 78888899999888887654 2222 3469999999999998876 3556677999999999999877
Q ss_pred CchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh-HHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHh
Q 000324 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQA 1558 (1665)
Q Consensus 1480 ~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~-~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~ 1558 (1665)
+ +...+..+..+++.++|++++|||.+.. .++.+-+... |+++.+.-+........+....
T Consensus 185 g------fkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~------------pv~i~vkk~~ltl~gikq~~i~ 246 (397)
T KOG0327|consen 185 G------FKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMRE------------PVRILVKKDELTLEGIKQFYIN 246 (397)
T ss_pred c------hHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccC------------ceEEEecchhhhhhheeeeeee
Confidence 7 7888888889999999999999999873 3555544332 2222222222111111111111
Q ss_pred cCh-hHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEE
Q 000324 1559 MTK-PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (1665)
Q Consensus 1559 ~~k-~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~ 1637 (1665)
..+ +.+..+........+++|||||++.+..+...| ...++.+.
T Consensus 247 v~k~~k~~~l~dl~~~~~q~~if~nt~r~v~~l~~~L-----------------------------------~~~~~~~s 291 (397)
T KOG0327|consen 247 VEKEEKLDTLCDLYRRVTQAVIFCNTRRKVDNLTDKL-----------------------------------RAHGFTVS 291 (397)
T ss_pred ccccccccHHHHHHHhhhcceEEecchhhHHHHHHHH-----------------------------------hhCCceEE
Confidence 111 112222222235567999999999999998776 34567789
Q ss_pred EEcCCCCHHHHHHHHHHHhcCCceEEE
Q 000324 1638 YLHEGLNKTDQEVVSALFEAGKIKICY 1664 (1665)
Q Consensus 1638 ~~H~~m~~~dR~~v~~~F~~G~i~VLV 1664 (1665)
.+|+.|.+.+|..++..|+.|..+|||
T Consensus 292 ~~~~d~~q~~R~~~~~ef~~gssrvlI 318 (397)
T KOG0327|consen 292 AIHGDMEQNERDTLMREFRSGSSRVLI 318 (397)
T ss_pred EeecccchhhhhHHHHHhhcCCceEEe
Confidence 999999999999999999999999997
No 148
>PRK09694 helicase Cas3; Provisional
Probab=99.93 E-value=1.5e-23 Score=272.71 Aligned_cols=314 Identities=19% Similarity=0.201 Sum_probs=195.1
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000324 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1665)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (1665)
...++|+|..+... -.+...+||.||||+|||.+++.++.+.+... ...+++|..||+++++++++++.+
T Consensus 284 ~~~p~p~Q~~~~~~-~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~---------~~~gi~~aLPT~Atan~m~~Rl~~ 353 (878)
T PRK09694 284 GYQPRQLQTLVDAL-PLQPGLTIIEAPTGSGKTEAALAYAWRLIDQG---------LADSIIFALPTQATANAMLSRLEA 353 (878)
T ss_pred CCCChHHHHHHHhh-ccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhC---------CCCeEEEECcHHHHHHHHHHHHHH
Confidence 44899999987543 23456799999999999999988776554332 134799999999999999999986
Q ss_pred hhccC--CcEEEEEECCCcccH-----------------------hhh-------ccccEEEeChhhH-HHHHhhcCCCc
Q 000324 573 RLQMY--DVKVRELSGDQTLTR-----------------------QQI-------EETQIIVTTPEKW-DIITRKSGDRT 619 (1665)
Q Consensus 573 ~~~~~--gi~V~~ltGd~~~~~-----------------------~~~-------~~~~IiV~TPekl-d~l~r~~~~~~ 619 (1665)
.+... ..+|..++|....+. +.. --++|+|||+.++ ..++.... .
T Consensus 354 ~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh--~ 431 (878)
T PRK09694 354 LASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKH--R 431 (878)
T ss_pred HHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccch--H
Confidence 44322 346777787654321 001 1268999999985 33332211 1
Q ss_pred cccce----eEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChH--HHHHHHhcc-c---c--Cc
Q 000324 620 YTQLV----KLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYE--DVALFLRVN-L---E--KG 687 (1665)
Q Consensus 620 ~l~~v----~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~--dv~~~l~~~-~---~--~~ 687 (1665)
++..+ ++|||||+|.+.. .+..++.++++.... ...++|+||||+|... .+..-.+.. + . -+
T Consensus 432 ~lR~~~La~svvIiDEVHAyD~----ym~~lL~~~L~~l~~--~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YP 505 (878)
T PRK09694 432 FIRGFGLGRSVLIVDEVHAYDA----YMYGLLEAVLKAQAQ--AGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYP 505 (878)
T ss_pred HHHHHhhccCeEEEechhhCCH----HHHHHHHHHHHHHHh--cCCcEEEEeCCCCHHHHHHHHHHhccccccccccccc
Confidence 22222 5899999998732 333444445444333 3567999999998521 121111110 0 0 00
Q ss_pred eE---------EecCCCc----cccceEEEEeeecCchhHHHHHHHHHHHHHHHHH-hCCCeEEEEecChhHHHHHHHHH
Q 000324 688 LF---------YFDNSYR----PVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAV-AGKHQVLIFVHSRKETAKTARAI 753 (1665)
Q Consensus 688 ~~---------~f~~~~r----pv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~vLVFv~sr~~~~~~a~~L 753 (1665)
+. .|....+ +.+....+.......... ...+.+.+.+. ..+++++|||||++.++.+++.|
T Consensus 506 lvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~-----~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L 580 (878)
T PRK09694 506 LITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLP-----DLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRL 580 (878)
T ss_pred cccccccccceeeeccccccccCcceEEEEEeeccccccC-----HHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHH
Confidence 00 0100001 111111111010000000 01223333332 34789999999999999999998
Q ss_pred HHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHH----HHHHHH-hCCC---CCeEE
Q 000324 754 RDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ----LVEDLF-GDGH---VQVLV 825 (1665)
Q Consensus 754 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~----~v~~~F-~~g~---i~VLV 825 (1665)
++.... ...+..+||+++..+|. .+++.| ++|. .+|||
T Consensus 581 ~~~~~~----------------------------------~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILV 626 (878)
T PRK09694 581 KELNNT----------------------------------QVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILV 626 (878)
T ss_pred HhhCCC----------------------------------CceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEE
Confidence 864211 12378899999999995 456677 6665 47999
Q ss_pred eccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCC
Q 000324 826 STATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876 (1665)
Q Consensus 826 aT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~ 876 (1665)
||+++++|||++ .+++|. ... ++..++||+||+||.+.
T Consensus 627 aTQViE~GLDId-~DvlIt----dla--------PidsLiQRaGR~~R~~~ 664 (878)
T PRK09694 627 ATQVVEQSLDLD-FDWLIT----QLC--------PVDLLFQRLGRLHRHHR 664 (878)
T ss_pred ECcchhheeecC-CCeEEE----CCC--------CHHHHHHHHhccCCCCC
Confidence 999999999995 578886 222 56789999999999875
No 149
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.92 E-value=4.5e-24 Score=279.22 Aligned_cols=301 Identities=21% Similarity=0.263 Sum_probs=224.1
Q ss_pred HHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHH
Q 000324 1332 YEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDW 1410 (1665)
Q Consensus 1332 ~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~ 1410 (1665)
...+.. |+..|.++|.+|+..+.+|+ |++|++|||||||.||++||+.++.+.+ .. ++|||.||+||++++.+++
T Consensus 60 ~~~l~~~g~~~lY~HQ~~A~~~~~~G~-~vvVtTgTgSGKTe~FllPIld~~l~~~-~a--~AL~lYPtnALa~DQ~~rl 135 (851)
T COG1205 60 KSALVKAGIERLYSHQVDALRLIREGR-NVVVTTGTGSGKTESFLLPILDHLLRDP-SA--RALLLYPTNALANDQAERL 135 (851)
T ss_pred HHHHHHhccccccHHHHHHHHHHHCCC-CEEEECCCCCchhHHHHHHHHHHHhhCc-Cc--cEEEEechhhhHhhHHHHH
Confidence 444444 67779999999999999974 5999999999999999999999999943 33 8999999999999999999
Q ss_pred HHHhcCCC-CcEEEEEeCCCccchh---ccCCCcEEEEChhhHHHH-HHhhh-ccccCCCccEEEeecccccCCCCchhH
Q 000324 1411 EIKFGQGL-GMRVVELTGETAMDLK---LLEKGQIIISTPEKWDAL-SRRWK-QRKYVQQVSLFIIDELHLIGGQGGPVL 1484 (1665)
Q Consensus 1411 ~~~~~~~~-~i~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~l-~r~~~-~~~~l~~v~llViDEaH~l~~~~g~~~ 1484 (1665)
.+...... ++.+..++|++....+ ....++|+++||.+|+.+ ++.+. .+..+.++++||+||+|.+-+-.|..+
T Consensus 136 ~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~v 215 (851)
T COG1205 136 RELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEV 215 (851)
T ss_pred HHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHH
Confidence 95444432 5899999999988755 356779999999999884 44322 233567899999999999998999999
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEcccCCChHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHH-H-hcChh
Q 000324 1485 EVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARM-Q-AMTKP 1562 (1665)
Q Consensus 1485 e~~~srl~~i~~~~~~~~riI~lSATl~n~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~-~-~~~k~ 1562 (1665)
..++.|++.+....+.+.|+|+.|||++|..++++-+.......- +..+..|-.....+...+........ . +....
T Consensus 216 A~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~-v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~ 294 (851)
T COG1205 216 ALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVP-VDEDGSPRGLRYFVRREPPIRELAESIRRSALAE 294 (851)
T ss_pred HHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceee-ccCCCCCCCceEEEEeCCcchhhhhhcccchHHH
Confidence 999999999999989999999999999998887776655443331 33333343333333333211111111 0 11111
Q ss_pred HHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCC
Q 000324 1563 TFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEG 1642 (1665)
Q Consensus 1563 ~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~ 1642 (1665)
.-..+...+..+-++|+|+.|+++++.++..........+ ..+...|..|||+
T Consensus 295 ~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~---------------------------~~l~~~v~~~~~~ 347 (851)
T COG1205 295 LATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREG---------------------------GKLLDAVSTYRAG 347 (851)
T ss_pred HHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcc---------------------------hhhhhheeecccc
Confidence 1122223335678899999999999999855432221111 1234568999999
Q ss_pred CCHHHHHHHHHHHhcCCceEEE
Q 000324 1643 LNKTDQEVVSALFEAGKIKICY 1664 (1665)
Q Consensus 1643 m~~~dR~~v~~~F~~G~i~VLV 1664 (1665)
|...+|..++..|++|++.+++
T Consensus 348 ~~~~er~~ie~~~~~g~~~~~~ 369 (851)
T COG1205 348 LHREERRRIEAEFKEGELLGVI 369 (851)
T ss_pred CCHHHHHHHHHHHhcCCccEEe
Confidence 9999999999999999999987
No 150
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.92 E-value=8.2e-24 Score=278.35 Aligned_cols=256 Identities=18% Similarity=0.225 Sum_probs=186.5
Q ss_pred CCCCCHHHHHHHHHHHcC-----CCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 000324 1339 FKHFNPIQTQVFTVLYNT-----DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIK 1413 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~~-----~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~ 1413 (1665)
| .+||+|.+|++.++++ ..+++++||||||||.+|++|++..+.. +. +++|++||++||.|+++.+++.
T Consensus 450 f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---g~--qvlvLvPT~~LA~Q~~~~f~~~ 523 (926)
T TIGR00580 450 F-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---GK--QVAVLVPTTLLAQQHFETFKER 523 (926)
T ss_pred C-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---CC--eEEEEeCcHHHHHHHHHHHHHH
Confidence 6 5999999999999874 3469999999999999999999988765 23 9999999999999999999976
Q ss_pred hcCCCCcEEEEEeCCCccch-----hccC--CCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHH
Q 000324 1414 FGQGLGMRVVELTGETAMDL-----KLLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEV 1486 (1665)
Q Consensus 1414 ~~~~~~i~v~~l~G~~~~~~-----~~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~ 1486 (1665)
|.. .++++..++|..+... +.+. .++|||+||..+ . ....+.+++++||||+|+++.. .
T Consensus 524 ~~~-~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~---~~v~f~~L~llVIDEahrfgv~----~-- 589 (926)
T TIGR00580 524 FAN-FPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----Q---KDVKFKDLGLLIIDEEQRFGVK----Q-- 589 (926)
T ss_pred hcc-CCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----h---CCCCcccCCEEEeecccccchh----H--
Confidence 664 5789999999876431 1122 469999999432 2 2345789999999999997421 1
Q ss_pred HHHHHHHHHhhcCCCCeEEEEcccCCChHHHHHH-hcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcChhHHH
Q 000324 1487 IVSRMRYIASQVENKIRIVALSTSLANAKDLGEW-IGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFT 1565 (1665)
Q Consensus 1487 ~~srl~~i~~~~~~~~riI~lSATl~n~~dl~~w-l~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~ 1565 (1665)
... ...+..++++++||||+.+ +.+... .+.....++...|..| .++..++..+. ......
T Consensus 590 -~~~----L~~~~~~~~vL~~SATpip-rtl~~~l~g~~d~s~I~~~p~~R-~~V~t~v~~~~-----------~~~i~~ 651 (926)
T TIGR00580 590 -KEK----LKELRTSVDVLTLSATPIP-RTLHMSMSGIRDLSIIATPPEDR-LPVRTFVMEYD-----------PELVRE 651 (926)
T ss_pred -HHH----HHhcCCCCCEEEEecCCCH-HHHHHHHhcCCCcEEEecCCCCc-cceEEEEEecC-----------HHHHHH
Confidence 112 2334678999999999644 444333 3433333444444433 23443333221 112233
Q ss_pred HHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCH
Q 000324 1566 AIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNK 1645 (1665)
Q Consensus 1566 ~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~ 1645 (1665)
.+...+..+++++||||++++++.++..|.... -+..|+.+||+|++
T Consensus 652 ~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~---------------------------------p~~~v~~lHG~m~~ 698 (926)
T TIGR00580 652 AIRRELLRGGQVFYVHNRIESIEKLATQLRELV---------------------------------PEARIAIAHGQMTE 698 (926)
T ss_pred HHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhC---------------------------------CCCeEEEecCCCCH
Confidence 444555678899999999999999997773211 13569999999999
Q ss_pred HHHHHHHHHHhcCCceEEEC
Q 000324 1646 TDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1646 ~dR~~v~~~F~~G~i~VLVC 1665 (1665)
.+|..+++.|++|+++||||
T Consensus 699 ~eRe~im~~F~~Gk~~ILVa 718 (926)
T TIGR00580 699 NELEEVMLEFYKGEFQVLVC 718 (926)
T ss_pred HHHHHHHHHHHcCCCCEEEE
Confidence 99999999999999999998
No 151
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.92 E-value=2.1e-23 Score=254.06 Aligned_cols=316 Identities=24% Similarity=0.345 Sum_probs=224.4
Q ss_pred CCCHHHHHHHHHHHcC---C--CcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000324 495 QLNRVQSRVYKSALSS---A--DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~---~--~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (1665)
+||.-|++++..+... . -|=|+.|.-|||||++|+++++..+.. ++.+..++||--||.|-+..
T Consensus 262 ~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~-----------G~Q~ALMAPTEILA~QH~~~ 330 (677)
T COG1200 262 KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA-----------GYQAALMAPTEILAEQHYES 330 (677)
T ss_pred CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc-----------CCeeEEeccHHHHHHHHHHH
Confidence 7899999999988653 2 266999999999999999999999865 56899999999999999999
Q ss_pred HHHhhccCCcEEEEEECCCcccHhh-------hccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchH
Q 000324 570 LSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPV 642 (1665)
Q Consensus 570 ~~~~~~~~gi~V~~ltGd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~ 642 (1665)
+.+++.++|++|..+||...-..+. ..+.+|+|+|.- |.. +...++++.|+|+||=|+.+- .
T Consensus 331 ~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHA----LiQ---d~V~F~~LgLVIiDEQHRFGV----~ 399 (677)
T COG1200 331 LRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHA----LIQ---DKVEFHNLGLVIIDEQHRFGV----H 399 (677)
T ss_pred HHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcch----hhh---cceeecceeEEEEeccccccH----H
Confidence 9999999999999999987654332 246899999975 222 234678899999999997642 2
Q ss_pred HHHHHHHHHHHHhhccC-CeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHHHHH
Q 000324 643 LESIVARTVRQIETTKE-HIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMND 721 (1665)
Q Consensus 643 le~iv~r~~~~~~~~~~-~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~ 721 (1665)
- | ..+...+. .+.++.|||| |-+.-++--.-.+.....+.--+..| .|+....+. ......
T Consensus 400 Q-----R--~~L~~KG~~~Ph~LvMTAT-PIPRTLAlt~fgDldvS~IdElP~GR-kpI~T~~i~--~~~~~~------- 461 (677)
T COG1200 400 Q-----R--LALREKGEQNPHVLVMTAT-PIPRTLALTAFGDLDVSIIDELPPGR-KPITTVVIP--HERRPE------- 461 (677)
T ss_pred H-----H--HHHHHhCCCCCcEEEEeCC-CchHHHHHHHhccccchhhccCCCCC-CceEEEEec--cccHHH-------
Confidence 1 1 11223344 6889999999 44454443333222211111111111 233333332 221111
Q ss_pred HHHHHHHH-HhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhc-CCcEEE
Q 000324 722 LCYEKVVA-VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL-PYGFAI 799 (1665)
Q Consensus 722 ~~~~~i~~-~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll-~~gv~~ 799 (1665)
+++.+.. ...++|+.|.|+-..+.+++-..-.... ...|+..+ .+.|+.
T Consensus 462 -v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~----------------------------~~~L~~~~~~~~vgL 512 (677)
T COG1200 462 -VYERIREEIAKGRQAYVVCPLIEESEKLELQAAEEL----------------------------YEELKSFLPELKVGL 512 (677)
T ss_pred -HHHHHHHHHHcCCEEEEEeccccccccchhhhHHHH----------------------------HHHHHHHcccceeEE
Confidence 2233332 2348899999998777663321000000 01112222 245999
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCc
Q 000324 800 HHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSY 879 (1665)
Q Consensus 800 ~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~ 879 (1665)
.||.|+..+++.|++.|++|+++|||||.+.+.|||+|+.++.|- +|++. +..++.-|--||.||.+ ..
T Consensus 513 ~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVI----e~AER-----FGLaQLHQLRGRVGRG~--~q 581 (677)
T COG1200 513 VHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVI----ENAER-----FGLAQLHQLRGRVGRGD--LQ 581 (677)
T ss_pred EecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEE----echhh-----hhHHHHHHhccccCCCC--cc
Confidence 999999999999999999999999999999999999999999776 78775 48999999999999965 78
Q ss_pred eEEEEEeCCCc
Q 000324 880 GEGIIITGHSE 890 (1665)
Q Consensus 880 G~~iil~~~~~ 890 (1665)
+.|++++.+..
T Consensus 582 SyC~Ll~~~~~ 592 (677)
T COG1200 582 SYCVLLYKPPL 592 (677)
T ss_pred eEEEEEeCCCC
Confidence 99999998755
No 152
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=2.9e-24 Score=254.51 Aligned_cols=286 Identities=26% Similarity=0.355 Sum_probs=209.6
Q ss_pred chhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhc---CCCCeEEEEEcccHHHH
Q 000324 1328 RNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS---ETGVMRAVYIAPLEALA 1403 (1665)
Q Consensus 1328 ~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~---~~~~~r~l~I~PtreLa 1403 (1665)
...+++++-. +|..|+|+|.+|+|.+++.++ ++.|||||||||++|.+|++.++.... ...+.+++|+.|+++|+
T Consensus 144 ~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~-~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa 222 (593)
T KOG0344|consen 144 NKRLLENLQELGFDEPTPIQKQAIPVFLEKRD-VLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELA 222 (593)
T ss_pred cHHHHHhHhhCCCCCCCcccchhhhhhhcccc-eEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHH
Confidence 4455666655 799999999999999999766 999999999999999999999998853 25567999999999999
Q ss_pred HHHHHHHHHHhc--CCCCcEEEEEeCCCccchh----ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccC
Q 000324 1404 KERYRDWEIKFG--QGLGMRVVELTGETAMDLK----LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1404 ~Q~~~~~~~~~~--~~~~i~v~~l~G~~~~~~~----~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~ 1477 (1665)
.|++.++. .+. ...+.++..+......+.+ ....++|+|+||-++..++........+.+|.++|+||+|++.
T Consensus 223 ~Qi~re~~-k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lf 301 (593)
T KOG0344|consen 223 AQIYREMR-KYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLF 301 (593)
T ss_pred HHHHHHHH-hcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhh
Confidence 99999998 666 5566666666665333321 2345699999999988887764444578999999999999998
Q ss_pred CCCchhHHHHHHHHHHHHhhcC-CCCeEEEEcccCCChHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHH
Q 000324 1478 GQGGPVLEVIVSRMRYIASQVE-NKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARM 1556 (1665)
Q Consensus 1478 ~~~g~~~e~~~srl~~i~~~~~-~~~riI~lSATl~n~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~ 1556 (1665)
+. +.+...+..|.+.+. +.+++-+||||++ ..+.+|.........+..-..++... ....+..
T Consensus 302 e~-----~~f~~Qla~I~sac~s~~i~~a~FSat~~--~~VEE~~~~i~~~~~~vivg~~~sa~---------~~V~Qel 365 (593)
T KOG0344|consen 302 EP-----EFFVEQLADIYSACQSPDIRVALFSATIS--VYVEEWAELIKSDLKRVIVGLRNSAN---------ETVDQEL 365 (593)
T ss_pred Ch-----hhHHHHHHHHHHHhcCcchhhhhhhcccc--HHHHHHHHHhhccceeEEEecchhHh---------hhhhhhh
Confidence 76 336677766666554 5677889999975 45778887665444443222222111 1111111
Q ss_pred Hh--cChhHHHHHHHHhc--CCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHh
Q 000324 1557 QA--MTKPTFTAIVQHAK--NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL 1632 (1665)
Q Consensus 1557 ~~--~~k~~~~~i~~~l~--~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l 1632 (1665)
.. -.+..+.++.+.+. -..|++|||.|..+|..+...|- .+-
T Consensus 366 vF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~----------------------------------~~~ 411 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELE----------------------------------IYD 411 (593)
T ss_pred eeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhh----------------------------------hcc
Confidence 11 11222333333332 34679999999999999997772 112
Q ss_pred cccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1633 RHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1633 ~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
...|+++||+.++.+|..++++|+.|+|+||||
T Consensus 412 ~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLic 444 (593)
T KOG0344|consen 412 NINVDVIHGERSQKQRDETMERFRIGKIWVLIC 444 (593)
T ss_pred CcceeeEecccchhHHHHHHHHHhccCeeEEEe
Confidence 345899999999999999999999999999999
No 153
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.91 E-value=3.1e-23 Score=264.62 Aligned_cols=270 Identities=17% Similarity=0.192 Sum_probs=171.8
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCe-EEEEEcccHHHHHHHHHHHHHHhcC
Q 000324 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVM-RAVYIAPLEALAKERYRDWEIKFGQ 1416 (1665)
Q Consensus 1338 ~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~-r~l~I~PtreLa~Q~~~~~~~~~~~ 1416 (1665)
||. |+|||.++++.++.|+++++++||||||||.++.++++..... ...+ +.||++|||+|+.|+++.+. ++++
T Consensus 13 G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~---~~~~~rLv~~vPtReLa~Qi~~~~~-~~~k 87 (844)
T TIGR02621 13 GYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIG---AKVPRRLVYVVNRRTVVDQVTEEAE-KIGE 87 (844)
T ss_pred CCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccccc---ccccceEEEeCchHHHHHHHHHHHH-HHHH
Confidence 688 9999999999999998779999999999999765444422111 1122 45568899999999999998 4554
Q ss_pred CC-----------------------CcEEEEEeCCCccchh---ccCCCcEEEEChhhHHH-HH-Hhhh--------ccc
Q 000324 1417 GL-----------------------GMRVVELTGETAMDLK---LLEKGQIIISTPEKWDA-LS-RRWK--------QRK 1460 (1665)
Q Consensus 1417 ~~-----------------------~i~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~-l~-r~~~--------~~~ 1460 (1665)
.+ ++++..++|+.+.+.+ +-.+++|||+|++.+.. .+ +.+. ..-
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag 167 (844)
T TIGR02621 88 RLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAG 167 (844)
T ss_pred HhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhh
Confidence 32 4889999999877633 33567999999755431 00 0000 001
Q ss_pred cCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhc--CC---CCeEEEEcccCCC-hHHHHHHhcccCCcEEecCCC
Q 000324 1461 YVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV--EN---KIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPG 1534 (1665)
Q Consensus 1461 ~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~--~~---~~riI~lSATl~n-~~dl~~wl~~~~~~~~~f~~~ 1534 (1665)
.+.++.++|+|||| + ..+ +...+..|.+.+ +. +.|+++||||++. ..+++..+..... .+.+...
T Consensus 168 ~L~~v~~LVLDEAD-L-d~g------F~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~-~i~V~~~ 238 (844)
T TIGR02621 168 FLGQDALIVHDEAH-L-EPA------FQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDY-KHPVLKK 238 (844)
T ss_pred hhccceEEEEehhh-h-ccc------cHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCc-eeecccc
Confidence 26789999999999 3 333 444555555532 22 3699999999976 3345555543321 1111111
Q ss_pred CCccceEEEEeecccchhhHHHHhcChhHHHHHHHH-hcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCc
Q 000324 1535 VRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQH-AKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPA 1613 (1665)
Q Consensus 1535 ~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~-l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~ 1613 (1665)
. .......+.+...... ... .....+... ...++++||||||++.|+.++..|.
T Consensus 239 ~--l~a~ki~q~v~v~~e~-Kl~----~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~------------------ 293 (844)
T TIGR02621 239 R--LAAKKIVKLVPPSDEK-FLS----TMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLP------------------ 293 (844)
T ss_pred c--ccccceEEEEecChHH-HHH----HHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHH------------------
Confidence 1 1110001111111100 000 011111111 1345789999999999999998872
Q ss_pred ccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHH-----HHHHHHhc----CC-------ceEEEC
Q 000324 1614 EEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQE-----VVSALFEA----GK-------IKICYR 1665 (1665)
Q Consensus 1614 ~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~-----~v~~~F~~----G~-------i~VLVC 1665 (1665)
..++..+||+|++.+|. .+++.|++ |. .+||||
T Consensus 294 -------------------~~g~~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVA 342 (844)
T TIGR02621 294 -------------------KEKFELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVC 342 (844)
T ss_pred -------------------hcCCeEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEec
Confidence 12348999999999999 88999987 54 789987
No 154
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.91 E-value=1.9e-24 Score=253.80 Aligned_cols=293 Identities=17% Similarity=0.224 Sum_probs=222.6
Q ss_pred cccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHH
Q 000324 1325 TALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403 (1665)
Q Consensus 1325 ~~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa 1403 (1665)
.+|..+++..|.. +|..|++||..|||.++.+=| +||+|..|+|||++|..+++..+... ...++++|++||||++
T Consensus 30 l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmD-liVQaKSGTGKTlVfsv~av~sl~~~--~~~~q~~Iv~PTREia 106 (980)
T KOG4284|consen 30 LALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMD-LIVQAKSGTGKTLVFSVLAVESLDSR--SSHIQKVIVTPTREIA 106 (980)
T ss_pred HHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccc-eEEEecCCCCceEEEEeeeehhcCcc--cCcceeEEEecchhhh
Confidence 4566678888876 799999999999999998777 99999999999999999998888763 3345999999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEeCCCccc--hhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCc
Q 000324 1404 KERYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (1665)
Q Consensus 1404 ~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g 1481 (1665)
-|+...+.+......|.++..+.||+... ...++.++|+|+||||+..+... ...++.+++|+|+||||.+.+..
T Consensus 107 VQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el--~~~n~s~vrlfVLDEADkL~~t~- 183 (980)
T KOG4284|consen 107 VQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVEL--GAMNMSHVRLFVLDEADKLMDTE- 183 (980)
T ss_pred hHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHh--cCCCccceeEEEeccHHhhhchh-
Confidence 99999999443345789999999997654 56778999999999999988876 56678999999999999987633
Q ss_pred hhHHHHHHHHHHHHhhcCCCCeEEEEcccCCC--hHHHHHHhcccCCcEEecCCCC-CccceEEEEeecccchhhHHHHh
Q 000324 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHGLFNFPPGV-RPVPLEIHIQGVDITNFEARMQA 1558 (1665)
Q Consensus 1482 ~~~e~~~srl~~i~~~~~~~~riI~lSATl~n--~~dl~~wl~~~~~~~~~f~~~~-rpv~l~i~i~~~~~~~~~~~~~~ 1558 (1665)
.+-..+..|...+|...|++++|||.+. ...++.++.... +..|.... .-.-+..++.....++.......
T Consensus 184 ----sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~--lVr~n~~d~~L~GikQyv~~~~s~nnsveemr 257 (980)
T KOG4284|consen 184 ----SFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPA--LVRFNADDVQLFGIKQYVVAKCSPNNSVEEMR 257 (980)
T ss_pred ----hHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccc--eeecccCCceeechhheeeeccCCcchHHHHH
Confidence 2778888888999999999999999987 335667765432 33332211 11112222222222222222111
Q ss_pred cChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEE
Q 000324 1559 MTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGY 1638 (1665)
Q Consensus 1559 ~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~ 1638 (1665)
.....+..+... .+..++||||+....|+.+|..| ..-+..+.+
T Consensus 258 lklq~L~~vf~~-ipy~QAlVF~~~~sra~~~a~~L-----------------------------------~ssG~d~~~ 301 (980)
T KOG4284|consen 258 LKLQKLTHVFKS-IPYVQALVFCDQISRAEPIATHL-----------------------------------KSSGLDVTF 301 (980)
T ss_pred HHHHHHHHHHhh-CchHHHHhhhhhhhhhhHHHHHh-----------------------------------hccCCCeEE
Confidence 222233333333 45667999999999999999777 234566899
Q ss_pred EcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1639 LHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1639 ~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
+.|.|++.+|..+++.+++-..+|||.
T Consensus 302 ISgaM~Q~~Rl~a~~~lr~f~~rILVs 328 (980)
T KOG4284|consen 302 ISGAMSQKDRLLAVDQLRAFRVRILVS 328 (980)
T ss_pred eccccchhHHHHHHHHhhhceEEEEEe
Confidence 999999999999999999999999984
No 155
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.91 E-value=5.9e-23 Score=275.93 Aligned_cols=256 Identities=18% Similarity=0.245 Sum_probs=184.0
Q ss_pred CCCCCHHHHHHHHHHHcC-----CCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 000324 1339 FKHFNPIQTQVFTVLYNT-----DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIK 1413 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~~-----~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~ 1413 (1665)
| .+|++|.+|++.++.+ ..+++++||||+|||.+|+.+++..+.. +. +++||+||++||.|+++.|++.
T Consensus 599 ~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~---g~--qvlvLvPT~eLA~Q~~~~f~~~ 672 (1147)
T PRK10689 599 F-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN---HK--QVAVLVPTTLLAQQHYDNFRDR 672 (1147)
T ss_pred C-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc---CC--eEEEEeCcHHHHHHHHHHHHHh
Confidence 5 7999999999999875 2469999999999999999888766543 33 9999999999999999999976
Q ss_pred hcCCCCcEEEEEeCCCccchh--cc-----CCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHH
Q 000324 1414 FGQGLGMRVVELTGETAMDLK--LL-----EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEV 1486 (1665)
Q Consensus 1414 ~~~~~~i~v~~l~G~~~~~~~--~l-----~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~ 1486 (1665)
|+. .++++..++|..+...+ .+ ..++|||+||+.+ + ....+.+++++||||+|+++..
T Consensus 673 ~~~-~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~---~~v~~~~L~lLVIDEahrfG~~------- 737 (1147)
T PRK10689 673 FAN-WPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----Q---SDVKWKDLGLLIVDEEHRFGVR------- 737 (1147)
T ss_pred hcc-CCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----h---CCCCHhhCCEEEEechhhcchh-------
Confidence 764 46888889887765422 11 2569999999643 2 2234678999999999998421
Q ss_pred HHHHHHHHHhhcCCCCeEEEEcccCCC-hHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcChhHHH
Q 000324 1487 IVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFT 1565 (1665)
Q Consensus 1487 ~~srl~~i~~~~~~~~riI~lSATl~n-~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~ 1565 (1665)
....+ ..++.++|+++||||+.+ ...++. .+.....++...|..+ .++......+.. .....
T Consensus 738 ~~e~l----k~l~~~~qvLl~SATpiprtl~l~~-~gl~d~~~I~~~p~~r-~~v~~~~~~~~~-----------~~~k~ 800 (1147)
T PRK10689 738 HKERI----KAMRADVDILTLTATPIPRTLNMAM-SGMRDLSIIATPPARR-LAVKTFVREYDS-----------LVVRE 800 (1147)
T ss_pred HHHHH----HhcCCCCcEEEEcCCCCHHHHHHHH-hhCCCcEEEecCCCCC-CCceEEEEecCc-----------HHHHH
Confidence 11222 345678999999999754 233332 2232333444444333 233333322210 11233
Q ss_pred HHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCH
Q 000324 1566 AIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNK 1645 (1665)
Q Consensus 1566 ~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~ 1645 (1665)
.+...+..+++++||||+++.++.++..|.... -+.+|+++||+|++
T Consensus 801 ~il~el~r~gqv~vf~n~i~~ie~la~~L~~~~---------------------------------p~~~v~~lHG~m~q 847 (1147)
T PRK10689 801 AILREILRGGQVYYLYNDVENIQKAAERLAELV---------------------------------PEARIAIGHGQMRE 847 (1147)
T ss_pred HHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhC---------------------------------CCCcEEEEeCCCCH
Confidence 444555667899999999999999997773211 14579999999999
Q ss_pred HHHHHHHHHHhcCCceEEEC
Q 000324 1646 TDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1646 ~dR~~v~~~F~~G~i~VLVC 1665 (1665)
.+|..++..|++|+++||||
T Consensus 848 ~eRe~im~~Fr~Gk~~VLVa 867 (1147)
T PRK10689 848 RELERVMNDFHHQRFNVLVC 867 (1147)
T ss_pred HHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999998
No 156
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.91 E-value=6.3e-23 Score=267.62 Aligned_cols=263 Identities=22% Similarity=0.304 Sum_probs=177.7
Q ss_pred CCCHHHHHHHHHHHcCC-----CcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhc
Q 000324 1341 HFNPIQTQVFTVLYNTD-----DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll~~~-----dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~ 1415 (1665)
.||++|.+|++.+..+- .|++++||||||||++|++|++..+.. +. +++|++||++||.|+++.+++.+
T Consensus 261 ~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---g~--q~lilaPT~~LA~Q~~~~l~~l~- 334 (681)
T PRK10917 261 ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---GY--QAALMAPTEILAEQHYENLKKLL- 334 (681)
T ss_pred CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---CC--eEEEEeccHHHHHHHHHHHHHHH-
Confidence 59999999999998752 479999999999999999999987754 33 99999999999999999999544
Q ss_pred CCCCcEEEEEeCCCccchh-----ccC--CCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHH
Q 000324 1416 QGLGMRVVELTGETAMDLK-----LLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488 (1665)
Q Consensus 1416 ~~~~i~v~~l~G~~~~~~~-----~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~ 1488 (1665)
...|+++..++|+.+...+ .+. .++|+|+||+.+.. ...+.+++++|+||+|+++... .
T Consensus 335 ~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-------~v~~~~l~lvVIDE~Hrfg~~q-------r 400 (681)
T PRK10917 335 EPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-------DVEFHNLGLVIIDEQHRFGVEQ-------R 400 (681)
T ss_pred hhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-------cchhcccceEEEechhhhhHHH-------H
Confidence 4468999999999875321 222 47999999987632 2347789999999999985221 1
Q ss_pred HHHHHHHhhcCCCCeEEEEcccCCChHHHHHH-hcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcChhHHHHH
Q 000324 1489 SRMRYIASQVENKIRIVALSTSLANAKDLGEW-IGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAI 1567 (1665)
Q Consensus 1489 srl~~i~~~~~~~~riI~lSATl~n~~dl~~w-l~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i 1567 (1665)
..+ .....++++++||||+.+ +.++.. .+........-.|..+. ++...+.... . ....+..+
T Consensus 401 ~~l----~~~~~~~~iL~~SATp~p-rtl~~~~~g~~~~s~i~~~p~~r~-~i~~~~~~~~--~--------~~~~~~~i 464 (681)
T PRK10917 401 LAL----REKGENPHVLVMTATPIP-RTLAMTAYGDLDVSVIDELPPGRK-PITTVVIPDS--R--------RDEVYERI 464 (681)
T ss_pred HHH----HhcCCCCCEEEEeCCCCH-HHHHHHHcCCCceEEEecCCCCCC-CcEEEEeCcc--c--------HHHHHHHH
Confidence 111 122456889999999744 333322 23222222222233222 3333322111 0 12234455
Q ss_pred HHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHh-cccEEEEcCCCCHH
Q 000324 1568 VQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL-RHGVGYLHEGLNKT 1646 (1665)
Q Consensus 1568 ~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l-~~gI~~~H~~m~~~ 1646 (1665)
...+..+++++|||+..+.++.+. +. .... + -+.|...+ ...|+++||+|++.
T Consensus 465 ~~~~~~g~q~~v~~~~ie~s~~l~--~~-------------------~~~~----~-~~~L~~~~~~~~v~~lHG~m~~~ 518 (681)
T PRK10917 465 REEIAKGRQAYVVCPLIEESEKLD--LQ-------------------SAEE----T-YEELQEAFPELRVGLLHGRMKPA 518 (681)
T ss_pred HHHHHcCCcEEEEEcccccccchh--HH-------------------HHHH----H-HHHHHHHCCCCcEEEEeCCCCHH
Confidence 555567889999999765443210 00 0000 0 01222222 36799999999999
Q ss_pred HHHHHHHHHhcCCceEEEC
Q 000324 1647 DQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1647 dR~~v~~~F~~G~i~VLVC 1665 (1665)
+|..+++.|++|+++||||
T Consensus 519 eR~~i~~~F~~g~~~ILVa 537 (681)
T PRK10917 519 EKDAVMAAFKAGEIDILVA 537 (681)
T ss_pred HHHHHHHHHHcCCCCEEEE
Confidence 9999999999999999998
No 157
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.91 E-value=1.3e-22 Score=263.22 Aligned_cols=268 Identities=21% Similarity=0.307 Sum_probs=177.9
Q ss_pred CCCCCCHHHHHHHHHHHcC-----CCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHH
Q 000324 1338 GFKHFNPIQTQVFTVLYNT-----DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEI 1412 (1665)
Q Consensus 1338 ~f~~~~~iQ~qa~~~ll~~-----~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~ 1412 (1665)
+| .||++|.+|++.++.+ ..|++++||||||||++|++|++..+.. +. +++|++||++||.|+++.+++
T Consensus 233 pf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---g~--qvlilaPT~~LA~Q~~~~~~~ 306 (630)
T TIGR00643 233 PF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---GY--QVALMAPTEILAEQHYNSLRN 306 (630)
T ss_pred CC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---CC--cEEEECCHHHHHHHHHHHHHH
Confidence 46 7999999999999864 2368999999999999999999988765 33 899999999999999999995
Q ss_pred HhcCCCCcEEEEEeCCCccchh-----ccC--CCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHH
Q 000324 1413 KFGQGLGMRVVELTGETAMDLK-----LLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE 1485 (1665)
Q Consensus 1413 ~~~~~~~i~v~~l~G~~~~~~~-----~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e 1485 (1665)
.+. ..|+++..++|+.+...+ .+. .++|||+||+.+.. ...+.+++++|+||+|+++... .
T Consensus 307 l~~-~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-------~~~~~~l~lvVIDEaH~fg~~q----r 374 (630)
T TIGR00643 307 LLA-PLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-------KVEFKRLALVIIDEQHRFGVEQ----R 374 (630)
T ss_pred Hhc-ccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-------cccccccceEEEechhhccHHH----H
Confidence 554 458999999999876422 222 45999999987642 2346889999999999975321 1
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcccCCChHHHHHHh-cccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcChhHH
Q 000324 1486 VIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWI-GATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTF 1564 (1665)
Q Consensus 1486 ~~~srl~~i~~~~~~~~riI~lSATl~n~~dl~~wl-~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~ 1564 (1665)
..+..... ....++++++|||+.+ +.++..+ +..........|..+ .++...+.... . ....+
T Consensus 375 ---~~l~~~~~-~~~~~~~l~~SATp~p-rtl~l~~~~~l~~~~i~~~p~~r-~~i~~~~~~~~--~--------~~~~~ 438 (630)
T TIGR00643 375 ---KKLREKGQ-GGFTPHVLVMSATPIP-RTLALTVYGDLDTSIIDELPPGR-KPITTVLIKHD--E--------KDIVY 438 (630)
T ss_pred ---HHHHHhcc-cCCCCCEEEEeCCCCc-HHHHHHhcCCcceeeeccCCCCC-CceEEEEeCcc--h--------HHHHH
Confidence 11111110 0126789999999754 2233222 222212222222222 13333322111 1 02344
Q ss_pred HHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHH-hcccEEEEcCCC
Q 000324 1565 TAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKAT-LRHGVGYLHEGL 1643 (1665)
Q Consensus 1565 ~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~-l~~gI~~~H~~m 1643 (1665)
..+...+..+++++|||+....++.+... ..+... ..|.+. .+..|+++||+|
T Consensus 439 ~~i~~~l~~g~q~~v~~~~i~~s~~~~~~---------------------~a~~~~-----~~L~~~~~~~~v~~lHG~m 492 (630)
T TIGR00643 439 EFIEEEIAKGRQAYVVYPLIEESEKLDLK---------------------AAEALY-----ERLKKAFPKYNVGLLHGRM 492 (630)
T ss_pred HHHHHHHHhCCcEEEEEccccccccchHH---------------------HHHHHH-----HHHHhhCCCCcEEEEeCCC
Confidence 55555656788999999987544322000 000000 112222 356799999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEC
Q 000324 1644 NKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1644 ~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
++.+|..+++.|++|+++||||
T Consensus 493 ~~~eR~~i~~~F~~g~~~ILVa 514 (630)
T TIGR00643 493 KSDEKEAVMEEFREGEVDILVA 514 (630)
T ss_pred CHHHHHHHHHHHHcCCCCEEEE
Confidence 9999999999999999999997
No 158
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.90 E-value=8.2e-23 Score=250.72 Aligned_cols=268 Identities=22% Similarity=0.335 Sum_probs=201.6
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHH
Q 000324 1330 PLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (1665)
Q Consensus 1330 ~~~~~l~~~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~ 1409 (1665)
..+..+|. +..|+|-|.+++..++++++ +++.+|||+||++||++|.+-. .| -+|||.|..+|..++...
T Consensus 7 ~~L~~~fG-y~~FR~gQ~evI~~~l~g~d-~lvvmPTGgGKSlCyQiPAll~------~G--~TLVVSPLiSLM~DQV~~ 76 (590)
T COG0514 7 QVLKQVFG-YASFRPGQQEIIDALLSGKD-TLVVMPTGGGKSLCYQIPALLL------EG--LTLVVSPLISLMKDQVDQ 76 (590)
T ss_pred HHHHHHhC-ccccCCCHHHHHHHHHcCCc-EEEEccCCCCcchHhhhHHHhc------CC--CEEEECchHHHHHHHHHH
Confidence 34556654 99999999999999999865 9999999999999999999832 34 799999999999999998
Q ss_pred HHHHhcCCCCcEEEEEeCCCccchh-----ccCC--CcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCch
Q 000324 1410 WEIKFGQGLGMRVVELTGETAMDLK-----LLEK--GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 1482 (1665)
Q Consensus 1410 ~~~~~~~~~~i~v~~l~G~~~~~~~-----~l~~--~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~ 1482 (1665)
++. .|+.+..+.+..+.+.+ .+.. -+++.-+||++..-.-. ....-..+.++|||||||+. .+|.
T Consensus 77 l~~-----~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~--~~L~~~~i~l~vIDEAHCiS-qWGh 148 (590)
T COG0514 77 LEA-----AGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFL--ELLKRLPISLVAIDEAHCIS-QWGH 148 (590)
T ss_pred HHH-----cCceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHH--HHHHhCCCceEEechHHHHh-hcCC
Confidence 883 26899999988776622 2333 48999999998542110 11114579999999999996 5567
Q ss_pred hHHHHHHHHHHHHhhcCCCCeEEEEcccCCC--hHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcC
Q 000324 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT 1560 (1665)
Q Consensus 1483 ~~e~~~srl~~i~~~~~~~~riI~lSATl~n--~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~ 1560 (1665)
.++.-..++..+...++ ++++++||||-++ ..|+.+-|+.....+|.-+. .|| +.........
T Consensus 149 dFRP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sf-dRp-------------Ni~~~v~~~~ 213 (590)
T COG0514 149 DFRPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSF-DRP-------------NLALKVVEKG 213 (590)
T ss_pred ccCHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecC-CCc-------------hhhhhhhhcc
Confidence 88888888888887777 8889999999766 45888989887654444222 222 2222221111
Q ss_pred --hhHHHHHHH-HhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEE
Q 000324 1561 --KPTFTAIVQ-HAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (1665)
Q Consensus 1561 --k~~~~~i~~-~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~ 1637 (1665)
...+..+.. .....++.||||.||+.|+.+|..|. .-+..++
T Consensus 214 ~~~~q~~fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~-----------------------------------~~g~~a~ 258 (590)
T COG0514 214 EPSDQLAFLATVLPQLSKSGIIYCLTRKKVEELAEWLR-----------------------------------KNGISAG 258 (590)
T ss_pred cHHHHHHHHHhhccccCCCeEEEEeeHHhHHHHHHHHH-----------------------------------HCCCceE
Confidence 111113332 11455679999999999999998883 2366799
Q ss_pred EEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1638 YLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1638 ~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
.|||||+..+|..+.+.|..+.++|+||
T Consensus 259 ~YHaGl~~~eR~~~q~~f~~~~~~iiVA 286 (590)
T COG0514 259 AYHAGLSNEERERVQQAFLNDEIKVMVA 286 (590)
T ss_pred EecCCCCHHHHHHHHHHHhcCCCcEEEE
Confidence 9999999999999999999999999998
No 159
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.90 E-value=3.6e-22 Score=242.06 Aligned_cols=268 Identities=20% Similarity=0.241 Sum_probs=175.4
Q ss_pred HHHHHHHHHHcCCC-cEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCC---CCc
Q 000324 1345 IQTQVFTVLYNTDD-NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG---LGM 1420 (1665)
Q Consensus 1345 iQ~qa~~~ll~~~d-nvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~---~~i 1420 (1665)
+|+++|+++++++. +++++||||||||.||++|++. ... +++|++|+++|++|++++|++.+... .+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~------~~~--~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH------GEN--DTIALYPTNALIEDQTEAIKEFVDVFKPERDV 72 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH------cCC--CEEEEeChHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 59999999999875 6899999999999999999983 123 78999999999999999999776432 367
Q ss_pred EEEEEeCCCccchhc-----------------------cCCCcEEEEChhhHHHHHHhhhccc------cCCCccEEEee
Q 000324 1421 RVVELTGETAMDLKL-----------------------LEKGQIIISTPEKWDALSRRWKQRK------YVQQVSLFIID 1471 (1665)
Q Consensus 1421 ~v~~l~G~~~~~~~~-----------------------l~~~~IIV~TPe~l~~l~r~~~~~~------~l~~v~llViD 1471 (1665)
.+..++|++..+.+. ...++|+++||+.|..++++|.... .+.+++++|+|
T Consensus 73 ~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~D 152 (357)
T TIGR03158 73 NLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFD 152 (357)
T ss_pred eEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEe
Confidence 788888874443111 2357899999999998888753222 36899999999
Q ss_pred cccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh--HHHHHH--hccc----CCcEEecCC----------
Q 000324 1472 ELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEW--IGAT----SHGLFNFPP---------- 1533 (1665)
Q Consensus 1472 EaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~--~dl~~w--l~~~----~~~~~~f~~---------- 1533 (1665)
|+|.+.......+...+..+..+... ....+++++|||++.. +.+.+- +|.. ....+.|..
T Consensus 153 E~H~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~ 231 (357)
T TIGR03158 153 EFHLYDAKQLVGMLFLLAYMQLIRFF-ECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKT 231 (357)
T ss_pred cccccCcccchhhhhhhHHHHHHHhh-hcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccc
Confidence 99999865554555444555544332 3357999999999763 122221 1111 011111211
Q ss_pred -CCCcc--ceEEEEeecccchhhHHHHhcChhHHHHHHHHh--cCCCCEEEEeCchHHHHHHHHHHHHhcccCCCccccc
Q 000324 1534 -GVRPV--PLEIHIQGVDITNFEARMQAMTKPTFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAF 1608 (1665)
Q Consensus 1534 -~~rpv--~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l--~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~ 1608 (1665)
..||+ +++..+.. ........+ +.....+.+.+ .+++++||||+|++.|+.++..|...
T Consensus 232 ~~~~~~~~~i~~~~~~-~~~~~~~~l----~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~----------- 295 (357)
T TIGR03158 232 QSFRPVLPPVELELIP-APDFKEEEL----SELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQ----------- 295 (357)
T ss_pred cccceeccceEEEEEe-CCchhHHHH----HHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhh-----------
Confidence 12322 33333322 111111111 11122222222 24678999999999999999877310
Q ss_pred ccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1609 LLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1609 l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
..+..+..+||.+++.+|..+ ++++||||
T Consensus 296 ----------------------~~~~~~~~l~g~~~~~~R~~~------~~~~iLVa 324 (357)
T TIGR03158 296 ----------------------GLGDDIGRITGFAPKKDRERA------MQFDILLG 324 (357)
T ss_pred ----------------------CCCceEEeeecCCCHHHHHHh------ccCCEEEE
Confidence 022357889999999998654 47889987
No 160
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.89 E-value=4.5e-23 Score=255.18 Aligned_cols=311 Identities=25% Similarity=0.403 Sum_probs=231.4
Q ss_pred CCCCCCHHHHHHHH--HHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhc
Q 000324 1338 GFKHFNPIQTQVFT--VLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (1665)
Q Consensus 1338 ~f~~~~~iQ~qa~~--~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~ 1415 (1665)
|...+..+|..|+. .++ ++.|.+.++||+.|||+++++-+++..... .. .++.+.|..+.+.+-...+. .|.
T Consensus 220 gi~~~fewq~ecls~~~~~-e~~nliys~Pts~gktlvaeilml~~~l~~--rr--~~llilp~vsiv~Ek~~~l~-~~~ 293 (1008)
T KOG0950|consen 220 GILKLFEWQAECLSLPRLL-ERKNLIYSLPTSAGKTLVAEILMLREVLCR--RR--NVLLILPYVSIVQEKISALS-PFS 293 (1008)
T ss_pred hHHHHHHHHHHHhcchhhh-cccceEEeCCCccchHHHHHHHHHHHHHHH--hh--ceeEecceeehhHHHHhhhh-hhc
Confidence 57789999999984 465 678899999999999999999999887763 22 68899999999988888777 677
Q ss_pred CCCCcEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCC-CCchhHHHHHHHHHHH
Q 000324 1416 QGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYI 1494 (1665)
Q Consensus 1416 ~~~~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~-~~g~~~e~~~srl~~i 1494 (1665)
...|+.|..++|..+.. +..+.-++.|||.|+-+.+..+.-....+..+++|||||.|++++ .+|..+|.++..+.+.
T Consensus 294 ~~~G~~ve~y~g~~~p~-~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~ 372 (1008)
T KOG0950|consen 294 IDLGFPVEEYAGRFPPE-KRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYE 372 (1008)
T ss_pred cccCCcchhhcccCCCC-CcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHh
Confidence 77899999888766544 445666899999999988887765555688899999999999998 4599999999999887
Q ss_pred HhhcCCCCeEEEEcccCCChHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcCh-------------
Q 000324 1495 ASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTK------------- 1561 (1665)
Q Consensus 1495 ~~~~~~~~riI~lSATl~n~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k------------- 1561 (1665)
.. ....|+||+|||++|..++..|+.. +.+....||+|+.-++..-.......++.....
T Consensus 373 ~~--~~~~~iIGMSATi~N~~lL~~~L~A-----~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~d 445 (1008)
T KOG0950|consen 373 NL--ETSVQIIGMSATIPNNSLLQDWLDA-----FVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDED 445 (1008)
T ss_pred cc--ccceeEeeeecccCChHHHHHHhhh-----hheecccCcccchhccCCCcccccchhhHHHHHhhhhhhhhcccCC
Confidence 54 3448899999999999999999984 345667799998766632222211112111110
Q ss_pred --hHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhh------HhhhhHHHHHHHhc
Q 000324 1562 --PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPF------IDNIQEEMLKATLR 1633 (1665)
Q Consensus 1562 --~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~------~~~i~d~~L~~~l~ 1633 (1665)
.....+.+.+..+.++||||++|+.|+.+|..+............ ++. .-++... ....-|..|+.++.
T Consensus 446 pD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~-~~~--~~~~~s~s~~lr~~~~~ld~Vl~~ti~ 522 (1008)
T KOG0950|consen 446 PDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEK-RLG--LWELLSISNLLRRIPGILDPVLAKTIP 522 (1008)
T ss_pred CcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhh-hhh--HHHHHHHHhHhhcCCcccchHHheecc
Confidence 111122233344566999999999999999888665543321111 110 0011111 11123567899999
Q ss_pred ccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1634 HGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1634 ~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
+||+|||+|++..+|+.|+..|++|.+.|++|
T Consensus 523 ~GvAyHhaGLT~eER~~iE~afr~g~i~vl~a 554 (1008)
T KOG0950|consen 523 YGVAYHHAGLTSEEREIIEAAFREGNIFVLVA 554 (1008)
T ss_pred ccceecccccccchHHHHHHHHHhcCeEEEEe
Confidence 99999999999999999999999999999997
No 161
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.89 E-value=1.5e-21 Score=216.18 Aligned_cols=311 Identities=22% Similarity=0.281 Sum_probs=211.7
Q ss_pred CCCCHHHHHHHHHHH---cCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 494 TQLNRVQSRVYKSAL---SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l---~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
.+|++.|..+-..++ +..+.+||.|-||||||......|-..+.+ +.++.+..|+...|-|++.++
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~-----------G~~vciASPRvDVclEl~~Rl 164 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQ-----------GGRVCIASPRVDVCLELYPRL 164 (441)
T ss_pred cccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhc-----------CCeEEEecCcccchHHHHHHH
Confidence 389999999877664 456779999999999999776666666543 558999999999999999999
Q ss_pred HHhhccCCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHH
Q 000324 571 SNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVART 650 (1665)
Q Consensus 571 ~~~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~ 650 (1665)
+..|. ++.+..++||+...- .++++|+|..+ +.|.. +.++++||||+|...-.-.+.+...+...
T Consensus 165 k~aF~--~~~I~~Lyg~S~~~f----r~plvVaTtHQ---LlrFk------~aFD~liIDEVDAFP~~~d~~L~~Av~~a 229 (441)
T COG4098 165 KQAFS--NCDIDLLYGDSDSYF----RAPLVVATTHQ---LLRFK------QAFDLLIIDEVDAFPFSDDQSLQYAVKKA 229 (441)
T ss_pred HHhhc--cCCeeeEecCCchhc----cccEEEEehHH---HHHHH------hhccEEEEeccccccccCCHHHHHHHHHh
Confidence 99877 567888999876433 38899999885 44432 34789999999987544455566555543
Q ss_pred HHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCce--EEecCCC--ccccceEEEEeeecCchhHHHHHHHHHHHHH
Q 000324 651 VRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGL--FYFDNSY--RPVPLSQQYIGIQVKKPLQRFQLMNDLCYEK 726 (1665)
Q Consensus 651 ~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~--~~f~~~~--rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1665)
....--+|.||||.++ .+.+-+. ...+ ......| +|.|+...+....-.+...+. .+.-.++..
T Consensus 230 ------rk~~g~~IylTATp~k--~l~r~~~---~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~-kl~~kl~~~ 297 (441)
T COG4098 230 ------RKKEGATIYLTATPTK--KLERKIL---KGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRN-KLPLKLKRW 297 (441)
T ss_pred ------hcccCceEEEecCChH--HHHHHhh---hCCeeEeecchhhcCCCCCCCceEEeccHHHHhhhc-cCCHHHHHH
Confidence 2345567999999764 2222221 1111 2222222 344444322211111111110 011122333
Q ss_pred HHHHhC-CCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCC
Q 000324 727 VVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMT 805 (1665)
Q Consensus 727 i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~ 805 (1665)
+..+.. +.|++||+++....+++|..|...... ..++..|+.
T Consensus 298 lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~-----------------------------------~~i~~Vhs~-- 340 (441)
T COG4098 298 LEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPK-----------------------------------ETIASVHSE-- 340 (441)
T ss_pred HHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCc-----------------------------------cceeeeecc--
Confidence 333333 689999999999999999988664321 124555653
Q ss_pred HHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEE
Q 000324 806 RGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885 (1665)
Q Consensus 806 ~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil 885 (1665)
..+|.+..+.|++|++++|++|.+|+|||.+|.+.|.+-|... .-++.+.++|++||+||.-....|..+.+
T Consensus 341 d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh--------~vfTesaLVQIaGRvGRs~~~PtGdv~FF 412 (441)
T COG4098 341 DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEH--------RVFTESALVQIAGRVGRSLERPTGDVLFF 412 (441)
T ss_pred CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCc--------ccccHHHHHHHhhhccCCCcCCCCcEEEE
Confidence 5678888999999999999999999999999999998864321 22477899999999999754455665555
Q ss_pred eC
Q 000324 886 TG 887 (1665)
Q Consensus 886 ~~ 887 (1665)
-.
T Consensus 413 H~ 414 (441)
T COG4098 413 HY 414 (441)
T ss_pred ec
Confidence 43
No 162
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.89 E-value=7.5e-22 Score=244.95 Aligned_cols=297 Identities=21% Similarity=0.276 Sum_probs=194.0
Q ss_pred CCCCCHHHHHHHHHHHcC---CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000324 493 MTQLNRVQSRVYKSALSS---ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (1665)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~---~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (1665)
...++++|.+++..+... ....++++|||+|||.+++..+-.. ..+++||+|+++|+.|+.+.
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~--------------~~~~Lvlv~~~~L~~Qw~~~ 99 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL--------------KRSTLVLVPTKELLDQWAEA 99 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh--------------cCCEEEEECcHHHHHHHHHH
Confidence 347999999999998884 5669999999999999997766543 12399999999999999988
Q ss_pred HHHhhccCCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhc-CCCccccceeEEEEecccccccCCchHHHHHHH
Q 000324 570 LSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS-GDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVA 648 (1665)
Q Consensus 570 ~~~~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~-~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~ 648 (1665)
+...+.. +..++.+.|+...... ..|.|+|.. .+.+.. ......+..++||+||||++.... +..+..
T Consensus 100 ~~~~~~~-~~~~g~~~~~~~~~~~----~~i~vat~q---tl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~---~~~~~~ 168 (442)
T COG1061 100 LKKFLLL-NDEIGIYGGGEKELEP----AKVTVATVQ---TLARRQLLDEFLGNEFGLIIFDEVHHLPAPS---YRRILE 168 (442)
T ss_pred HHHhcCC-ccccceecCceeccCC----CcEEEEEhH---HHhhhhhhhhhcccccCEEEEEccccCCcHH---HHHHHH
Confidence 7776542 2346666666543221 569999988 454431 111233468999999999986532 232332
Q ss_pred HHHHHHhhccCCee-EEEEcccCCC-----hHHHHHHHhccccCceEEecC-----CCccccceEEEEee--ecCc----
Q 000324 649 RTVRQIETTKEHIR-LVGLSATLPN-----YEDVALFLRVNLEKGLFYFDN-----SYRPVPLSQQYIGI--QVKK---- 711 (1665)
Q Consensus 649 r~~~~~~~~~~~~r-iV~lSATl~n-----~~dv~~~l~~~~~~~~~~f~~-----~~rpv~l~~~~~~~--~~~~---- 711 (1665)
.+ .... ++|||||++- ..++...++ .-++.+.. ...-.|.....+.. ....
T Consensus 169 ~~--------~~~~~~LGLTATp~R~D~~~~~~l~~~~g----~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~ 236 (442)
T COG1061 169 LL--------SAAYPRLGLTATPEREDGGRIGDLFDLIG----PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREY 236 (442)
T ss_pred hh--------hcccceeeeccCceeecCCchhHHHHhcC----CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHh
Confidence 22 1223 8999999762 122333332 00111110 00111211111111 1100
Q ss_pred --hhHHHH-------------------HHHH----HHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccc
Q 000324 712 --PLQRFQ-------------------LMND----LCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRF 766 (1665)
Q Consensus 712 --~~~~~~-------------------~~~~----~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~ 766 (1665)
...+.. ..+. .+...+..+..+.+++||+.+...+..++..+...+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~--------- 307 (442)
T COG1061 237 AKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPG--------- 307 (442)
T ss_pred hhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCC---------
Confidence 000000 0000 111111112135699999999999999988765432
Q ss_pred cccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecc
Q 000324 767 LKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGT 846 (1665)
Q Consensus 767 ~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t 846 (1665)
++....+..+..+|..+++.|+.|.+++||++.++..|+|+|++.++|.
T Consensus 308 -----------------------------~~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~-- 356 (442)
T COG1061 308 -----------------------------IVEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLII-- 356 (442)
T ss_pred -----------------------------ceEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEE--
Confidence 1345689999999999999999999999999999999999999999997
Q ss_pred cccCCCCCCcccCCHHHHHhhhcccCCC
Q 000324 847 QIYNPEKGAWTELSPLDIMQMLGRAGRP 874 (1665)
Q Consensus 847 ~~yd~~~g~~~~~s~~~~~Qr~GRAGR~ 874 (1665)
-.|.. |...|+||+||.-|+
T Consensus 357 --~~~t~------S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 357 --LRPTG------SRRLFIQRLGRGLRP 376 (442)
T ss_pred --eCCCC------cHHHHHHHhhhhccC
Confidence 55543 899999999999996
No 163
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.88 E-value=1.5e-22 Score=227.92 Aligned_cols=320 Identities=18% Similarity=0.250 Sum_probs=201.2
Q ss_pred CCcEEEEEcccHHHHHHHHHHHHHh---hccCCcEEEEEECCCcccHh---hhccccEEEeChhhHHHHHhhcCCCcccc
Q 000324 549 SNYKIVYVAPMKALVAEVVGNLSNR---LQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKWDIITRKSGDRTYTQ 622 (1665)
Q Consensus 549 ~~~kil~iaP~raLa~q~~~~~~~~---~~~~gi~V~~ltGd~~~~~~---~~~~~~IiV~TPekld~l~r~~~~~~~l~ 622 (1665)
+.+++|++-|.|+|+.|.++.+.++ .....++-..+.|+.....+ ...+++|+|+||++++.+..+.. ..+.
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~--~~lt 362 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGL--VTLT 362 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccc--eeee
Confidence 5678999999999999999966553 32223444456665544433 34689999999999865555443 4678
Q ss_pred ceeEEEEecccccccCCchHHHHHHHHHHHHHhhc---cCCeeEEEEcccCCCh--HHHHH-------HHhcccc----C
Q 000324 623 LVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETT---KEHIRLVGLSATLPNY--EDVAL-------FLRVNLE----K 686 (1665)
Q Consensus 623 ~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~---~~~~riV~lSATl~n~--~dv~~-------~l~~~~~----~ 686 (1665)
+++++|+||++.++.. .+...+.|+..++.+. ....+.+.+|||+.-. ..+++ |...... .
T Consensus 363 ~crFlvlDead~lL~q---gy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpe 439 (725)
T KOG0349|consen 363 HCRFLVLDEADLLLGQ---GYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPE 439 (725)
T ss_pred eeEEEEecchhhhhhc---ccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccch
Confidence 8999999999998752 2445555655444332 3567889999998642 22332 2211100 0
Q ss_pred ceEEe--------cCCCccc--cc-------eEEEEe--eecCchhHHHHHH-HHHHHHHHHHHhCCCeEEEEecChhHH
Q 000324 687 GLFYF--------DNSYRPV--PL-------SQQYIG--IQVKKPLQRFQLM-NDLCYEKVVAVAGKHQVLIFVHSRKET 746 (1665)
Q Consensus 687 ~~~~f--------~~~~rpv--~l-------~~~~~~--~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~vLVFv~sr~~~ 746 (1665)
.+..+ +.+|-.. ++ .+.... ............+ .+.+...+.++ ...++||||.|+.+|
T Consensus 440 tvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h-~mdkaiifcrtk~dc 518 (725)
T KOG0349|consen 440 TVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH-AMDKAIIFCRTKQDC 518 (725)
T ss_pred hhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh-ccCceEEEEeccccc
Confidence 00000 1111100 00 000000 0011111111111 11222222222 356899999999999
Q ss_pred HHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEe
Q 000324 747 AKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVS 826 (1665)
Q Consensus 747 ~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVa 826 (1665)
..+-+.+.+.+.. .+....+||...+.+|...++.|+.+.++.|||
T Consensus 519 DnLer~~~qkgg~----------------------------------~~scvclhgDrkP~Erk~nle~Fkk~dvkflic 564 (725)
T KOG0349|consen 519 DNLERMMNQKGGK----------------------------------HYSCVCLHGDRKPDERKANLESFKKFDVKFLIC 564 (725)
T ss_pred hHHHHHHHHcCCc----------------------------------cceeEEEecCCChhHHHHHHHhhhhcCeEEEEE
Confidence 9999998886532 144677899999999999999999999999999
Q ss_pred ccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCC-CcHHHHH--Hh-----h
Q 000324 827 TATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH-SELRYYL--SL-----M 898 (1665)
Q Consensus 827 T~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~-~~~~~y~--~l-----l 898 (1665)
|+++|+|+|+..+.++|+-|.+-| ...|+||+||.||+- +-|.+|.++.. .++-.|- +- .
T Consensus 565 tdvaargldi~g~p~~invtlpd~----------k~nyvhrigrvgrae--rmglaislvat~~ekvwyh~c~srgr~c~ 632 (725)
T KOG0349|consen 565 TDVAARGLDITGLPFMINVTLPDD----------KTNYVHRIGRVGRAE--RMGLAISLVATVPEKVWYHWCKSRGRSCN 632 (725)
T ss_pred ehhhhccccccCCceEEEEecCcc----------cchhhhhhhccchhh--hcceeEEEeeccchheeehhhhccCCccc
Confidence 999999999999999999665544 446999999999975 77888877654 3332221 10 1
Q ss_pred cCCC---------ccccchhHhhHHHHHHHH
Q 000324 899 NQQL---------PIESQFVSKLADQLNAEI 920 (1665)
Q Consensus 899 ~~~~---------piES~l~~~l~d~lnaeI 920 (1665)
|..+ --|-+|++.+.||||--|
T Consensus 633 nt~l~e~~gc~iwyne~~llaeve~hln~ti 663 (725)
T KOG0349|consen 633 NTNLTEVRGCCIWYNEPNLLAEVEDHLNITI 663 (725)
T ss_pred CCccccccceEEEeCchhHHHHHHHhhccee
Confidence 1111 126677777788887544
No 164
>PRK09401 reverse gyrase; Reviewed
Probab=99.88 E-value=1.1e-21 Score=264.39 Aligned_cols=265 Identities=19% Similarity=0.241 Sum_probs=169.6
Q ss_pred HHHHHhc---CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHH
Q 000324 1331 LYEALYQ---GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (1665)
Q Consensus 1331 ~~~~l~~---~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~ 1407 (1665)
.++.+|. |+ .|+|+|.++++.++.+++ ++++||||||||.+ .++++..+.. .+. ++|||+||++|+.|++
T Consensus 68 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~g~d-v~i~ApTGsGKT~f-~l~~~~~l~~--~g~--~alIL~PTreLa~Qi~ 140 (1176)
T PRK09401 68 EFEKFFKKKTGS-KPWSLQRTWAKRLLLGES-FAIIAPTGVGKTTF-GLVMSLYLAK--KGK--KSYIIFPTRLLVEQVV 140 (1176)
T ss_pred HHHHHHHHhcCC-CCcHHHHHHHHHHHCCCc-EEEEcCCCCCHHHH-HHHHHHHHHh--cCC--eEEEEeccHHHHHHHH
Confidence 4555664 34 899999999999998765 99999999999964 4555444433 233 9999999999999999
Q ss_pred HHHHHHhcCCCCcEEEEEeCCCcc--c-----hhcc--CCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCC
Q 000324 1408 RDWEIKFGQGLGMRVVELTGETAM--D-----LKLL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (1665)
Q Consensus 1408 ~~~~~~~~~~~~i~v~~l~G~~~~--~-----~~~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~ 1478 (1665)
+.++ .++...++.+..+.|+... + ...+ ..++|+|+||+++..+... .....++++|+||||+++.
T Consensus 141 ~~l~-~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~----l~~~~~~~lVvDEaD~~L~ 215 (1176)
T PRK09401 141 EKLE-KFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE----LPKKKFDFVFVDDVDAVLK 215 (1176)
T ss_pred HHHH-HHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh----ccccccCEEEEEChHHhhh
Confidence 9999 6766677888777776532 1 1122 2479999999998876552 2345699999999999875
Q ss_pred CC----------c---hhHHHHHHHHH-------------HHHhhc----CCCCeEEEEcccCCCh-HH---HHHHhccc
Q 000324 1479 QG----------G---PVLEVIVSRMR-------------YIASQV----ENKIRIVALSTSLANA-KD---LGEWIGAT 1524 (1665)
Q Consensus 1479 ~~----------g---~~~e~~~srl~-------------~i~~~~----~~~~riI~lSATl~n~-~d---l~~wl~~~ 1524 (1665)
+. | ..++.++..++ .+.... +...|++++|||+++. .. +.+.++
T Consensus 216 ~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~-- 293 (1176)
T PRK09401 216 SSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLG-- 293 (1176)
T ss_pred cccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccce--
Confidence 21 1 12222332221 111111 1268999999999752 11 112221
Q ss_pred CCcEEecCCCCCc-cceEEEEeecccchhhHHHHhcChhHHHHHHHHhcCCCCEEEEeCchHH---HHHHHHHHHHhccc
Q 000324 1525 SHGLFNFPPGVRP-VPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKY---VRLTAVDLMTYSSM 1600 (1665)
Q Consensus 1525 ~~~~~~f~~~~rp-v~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~---a~~la~~L~~~~~~ 1600 (1665)
|........ -.+... +.... . .......++..+ +.++||||+|++. |+.++..|
T Consensus 294 ----~~v~~~~~~~rnI~~~---yi~~~--~-----k~~~L~~ll~~l--~~~~LIFv~t~~~~~~ae~l~~~L------ 351 (1176)
T PRK09401 294 ----FEVGSPVFYLRNIVDS---YIVDE--D-----SVEKLVELVKRL--GDGGLIFVPSDKGKEYAEELAEYL------ 351 (1176)
T ss_pred ----EEecCcccccCCceEE---EEEcc--c-----HHHHHHHHHHhc--CCCEEEEEecccChHHHHHHHHHH------
Confidence 111111000 011111 10000 0 111222233332 3579999999888 98888777
Q ss_pred CCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1601 DGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1601 ~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
...+..++.+||+| +| .++.|++|+++||||
T Consensus 352 -----------------------------~~~gi~v~~~hg~l---~~--~l~~F~~G~~~VLVa 382 (1176)
T PRK09401 352 -----------------------------EDLGINAELAISGF---ER--KFEKFEEGEVDVLVG 382 (1176)
T ss_pred -----------------------------HHCCCcEEEEeCcH---HH--HHHHHHCCCCCEEEE
Confidence 23466789999999 22 349999999999997
No 165
>KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.2e-21 Score=216.03 Aligned_cols=279 Identities=24% Similarity=0.365 Sum_probs=222.8
Q ss_pred CCCCHHHHHHHhcCCccC-----CCCcCChhHHHHHHHHhccCCC---CCCCC-CC-ChHHHHHHHHHHHHcCCCCCCCc
Q 000324 1022 PTMGDIELCRLFSLSEEF-----KYVTVRQDEKMELAKLLDRVPI---PVKES-LE-EPSAKINVLLQAYISQLKLEGLS 1091 (1665)
Q Consensus 1022 ~~~~~~~ll~~~s~s~Ef-----~~i~~R~~E~~~l~~l~~~~~~---~~~~~-~~-~~~~K~~~Llqa~is~~~~~~~~ 1091 (1665)
|.|.+.-++-+||.|.|| +.+.-|+.+..++-+|+..++- .-++. .. .-+.|+.+||.||+||++|+.-.
T Consensus 9 p~M~~kR~imVLags~EFdkqyNk~iqeR~tDn~evP~Lirqi~~vN~K~kE~PL~~pYslKaRvlLhahLsRmpl~~dt 88 (520)
T KOG4434|consen 9 PRMEIKRMIMVLAGSFEFDKQYNKEIQERETDNYEVPRLIRQIAGVNDKGKEQPLSQPYSLKARVLLHAHLSRMPLESDT 88 (520)
T ss_pred chhHHHHHHHHHhcccccChhhchhhhccCCcchHHHHHHHHcccccccccCCCccCchhHHHHHHHHHHHhcCCCChhh
Confidence 566667888999999999 4578888888888888876553 22221 12 34789999999999999999889
Q ss_pred chhhHHHHHHhHHHHHHHHHHHHHHc----------C--CHHHHHHHHHHHHHHHcccCCCCCcccccCCCCHHHHHHHH
Q 000324 1092 LTSDMVFITQSAGRLLRALFEIVLKR----------G--WAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLE 1159 (1665)
Q Consensus 1092 l~~D~~~i~~~a~rl~~a~~ei~~~~----------g--~~~~a~~~l~L~k~i~~~~W~~~~pL~Q~~~i~~~~~~~l~ 1159 (1665)
|.-|..||+..++||+..|+..+... . -.....+||.|+.|++||+|...|||.|+|||++.-++.+.
T Consensus 89 LEeDqqfiikkcp~lvqEMVnc~~qLi~May~r~~~r~psiet~eNcmKlspM~vQgLwqfkSPLLQLPHitednL~~~~ 168 (520)
T KOG4434|consen 89 LEEDQQFIIKKCPRLVQEMVNCSQQLIVMAYSRHTRRIPSIETFENCMKLSPMFVQGLWQFKSPLLQLPHITEDNLQHLR 168 (520)
T ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccCccHHHHHHHHhccHHHHHHHHHhcChhhcCCccchHHHHHHh
Confidence 99999999999999999998754221 1 13567889999999999999999999999999999999998
Q ss_pred hCC-C-CchhhccCChHHHhhhhcCc--hhhHHHHHHHhcCCcceEEEEEeecc---------CceEEEEEEEccC----
Q 000324 1160 KKD-F-AWERYYDLSPQELGELIRFP--KMGRTLHKFVHQFPKLILAAHVQPIT---------RTVLKVELTITPD---- 1222 (1665)
Q Consensus 1160 ~~~-~-~~~~l~~l~~~el~~ll~~~--~~~~~i~~~~~~~P~l~l~~~v~pit---------~~~l~v~l~i~~~---- 1222 (1665)
++- + +++++..|.++++..||++- ..-+.+...+..||++.++..-+.+. +.+++|.|++++.
T Consensus 169 KKr~vks~qdla~lk~e~rr~lL~~LsdeeYe~vM~VLg~mP~~~~~ik~~V~dded~n~~TaG~vVTv~Vtl~R~~l~d 248 (520)
T KOG4434|consen 169 KKRKVKSCQDLAVLKAETRRSLLRSLSDEEYEDVMVVLGMMPRLQIEIKTVVEDDEDKNELTAGCVVTVKVTLRRSRLID 248 (520)
T ss_pred hhcccccHHHHhhcCHHHHHHHHHhcchHHHHHHHHHHccCcceEEEeeEEEecCCcccceeeeeEEEEEEEEEeccccC
Confidence 664 4 88999999999999999853 33488999999999999987765442 4577788887541
Q ss_pred --------------------------------------------------------------------------------
Q 000324 1223 -------------------------------------------------------------------------------- 1222 (1665)
Q Consensus 1223 -------------------------------------------------------------------------------- 1222 (1665)
T Consensus 249 ~~e~~~~d~~k~paedG~~de~n~ea~g~~~eaaa~~~~~~vKK~kpw~K~Kpk~~kkpaq~Q~~qK~v~~~aas~at~k 328 (520)
T KOG4434|consen 249 PQEAGLADQYKKPAEDGGDDENNLEASGAPEEAAATVEEEEVKKRKPWEKNKPKQKKKPAQGQGQQKFVKKNAASPATEK 328 (520)
T ss_pred hHhhhhhhhhhCchhhCCCcccchhccCChhhhccccchhhhhhcCchhhcCCCcccCccccchhhhhcccccCChhhhh
Confidence
Q ss_pred -----------------------------------------------CccCC-------------------CCCCCccc-
Q 000324 1223 -----------------------------------------------FLWDD-------------------KVHGYVEP- 1235 (1665)
Q Consensus 1223 -----------------------------------------------~~w~~-------------------~~h~~~e~- 1235 (1665)
-+|.+ .||++++|
T Consensus 329 a~eeea~~~~sD~E~e~~n~Ds~dees~asd~~~D~e~~~~~ddddd~EWe~lqa~~~kr~~lEtKs~~tHtVh~pyFPe 408 (520)
T KOG4434|consen 329 ALEEEAKDKGSDSEEEETNRDSQDEESDASDRDSDREQDEKQDDDDDAEWEELQASIQKRALLETKSKITHTVHSPYFPE 408 (520)
T ss_pred hhHHHhhhcCcchhhhhhcccccccccccCccccchhhccccccccHHHHHHHHHHHHHHHhhhcccccceeeccCCCcc
Confidence 01221 18888877
Q ss_pred -----EEEEEEeCCCCeEEEEeeeeeeecccccceeEEEeeccCCCCCCceEEEEeeccccccccccccccc
Q 000324 1236 -----FWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFR 1302 (1665)
Q Consensus 1236 -----~wi~v~d~~~~~il~~~~~~l~~~~~~~~~~~~f~vp~~~p~p~~y~v~~vSD~wl~~e~~~~vs~~ 1302 (1665)
||++|.|.++..++-..+..-+- .-.++..+.|+.|- .||.+.|.|.+-||+|+|.++..+..+.
T Consensus 409 EKqEwWW~Yi~drKsrtLlt~PyhV~tL-~d~eei~lkF~AP~-~pG~Ytytv~lrSDSYmg~dq~~~lKld 478 (520)
T KOG4434|consen 409 EKQEWWWLYIADRKSRTLLTMPYHVCTL-KDTEEIELKFPAPG-KPGNYTYTVFLRSDSYMGLDQIKPLKLD 478 (520)
T ss_pred hhhheeeeeeecccccceecchhhhhcc-cccceeEEeccCCC-CCCceEEEEEEecccccChhhccceeee
Confidence 99999999999988766643221 11578899999997 8999999999999999999998776553
No 166
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.87 E-value=2.9e-21 Score=236.50 Aligned_cols=254 Identities=17% Similarity=0.175 Sum_probs=159.3
Q ss_pred EEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccc-------
Q 000324 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD------- 1432 (1665)
Q Consensus 1360 vlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~------- 1432 (1665)
++++||||||||++|++|++..+.. .... +++|++|+++|+.|+++++...|+. .++.++|.....
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~-~~~~--~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~~~~~~~~ 74 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKS-QKAD--RVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFKRIKEMGD 74 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhh-CCCC--eEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHHHHhccCC
Confidence 8999999999999999999988765 2334 9999999999999999999977764 345555543210
Q ss_pred --------------hhccCCCcEEEEChhhHHHHHHh-hhcc-ccC--CCccEEEeecccccCCCCchhHHHHHHHHHHH
Q 000324 1433 --------------LKLLEKGQIIISTPEKWDALSRR-WKQR-KYV--QQVSLFIIDELHLIGGQGGPVLEVIVSRMRYI 1494 (1665)
Q Consensus 1433 --------------~~~l~~~~IIV~TPe~l~~l~r~-~~~~-~~l--~~v~llViDEaH~l~~~~g~~~e~~~srl~~i 1494 (1665)
...+..++|+|+||+++...+.. .... ..+ -..+++|+||+|.+.+..... +...+..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~---l~~~l~~l 151 (358)
T TIGR01587 75 SEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL---ILAVLEVL 151 (358)
T ss_pred chhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH---HHHHHHHH
Confidence 00123468999999998765443 1110 111 123899999999998643222 33333333
Q ss_pred HhhcCCCCeEEEEcccCCChHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcChhHHHHHHHHhcCC
Q 000324 1495 ASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNE 1574 (1665)
Q Consensus 1495 ~~~~~~~~riI~lSATl~n~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l~~~ 1574 (1665)
. ..+.|++++|||+++ .+.+|+...............+.. ....+.+... .. ...........+......+
T Consensus 152 ~---~~~~~~i~~SATlp~--~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~-~~~~~~~~l~~l~~~~~~~ 222 (358)
T TIGR01587 152 K---DNDVPILLMSATLPK--FLKEYAEKIGYVEFNEPLDLKEER-RFERHRFIKI--ES-DKVGEISSLERLLEFIKKG 222 (358)
T ss_pred H---HcCCCEEEEecCchH--HHHHHHhcCCCcccccCCCCcccc-ccccccceee--cc-ccccCHHHHHHHHHHhhCC
Confidence 2 347899999999973 355555332111000000000000 0000000000 00 0001112233344444567
Q ss_pred CCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHH---
Q 000324 1575 KPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV--- 1651 (1665)
Q Consensus 1575 ~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v--- 1651 (1665)
+++||||+|+++|+.++..|.... ....+..+||+|++.+|..+
T Consensus 223 ~~~lVf~~t~~~~~~~~~~L~~~~---------------------------------~~~~~~~~h~~~~~~~r~~~~~~ 269 (358)
T TIGR01587 223 GKIAIIVNTVDRAQEFYQQLKENA---------------------------------PEEEIMLLHSRFTEKDRAKKEAE 269 (358)
T ss_pred CeEEEEECCHHHHHHHHHHHHhhc---------------------------------CCCeEEEEECCCCHHHHHHHHHH
Confidence 899999999999999998874211 12358999999999999764
Q ss_pred -HHHHhcCCceEEEC
Q 000324 1652 -SALFEAGKIKICYR 1665 (1665)
Q Consensus 1652 -~~~F~~G~i~VLVC 1665 (1665)
++.|++|..+||||
T Consensus 270 ~~~~f~~~~~~ilva 284 (358)
T TIGR01587 270 LLEEMKKNEKFVIVA 284 (358)
T ss_pred HHHHhcCCCCeEEEE
Confidence 88999999999998
No 167
>PRK14701 reverse gyrase; Provisional
Probab=99.87 E-value=4.9e-21 Score=262.65 Aligned_cols=264 Identities=19% Similarity=0.191 Sum_probs=172.8
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000324 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (1665)
Q Consensus 1338 ~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~ 1417 (1665)
|| .|+++|.++++.++.+++ ++++||||||||++++++.+.... .+. ++|||+||++|+.|+++.++ .++..
T Consensus 77 G~-~pt~iQ~~~i~~il~G~d-~li~APTGsGKTl~~~~~al~~~~---~g~--~aLVl~PTreLa~Qi~~~l~-~l~~~ 148 (1638)
T PRK14701 77 GF-EFWSIQKTWAKRILRGKS-FSIVAPTGMGKSTFGAFIALFLAL---KGK--KCYIILPTTLLVKQTVEKIE-SFCEK 148 (1638)
T ss_pred CC-CCCHHHHHHHHHHHcCCC-EEEEEcCCCCHHHHHHHHHHHHHh---cCC--eEEEEECHHHHHHHHHHHHH-HHHhh
Confidence 68 699999999999999876 999999999999987766654422 233 89999999999999999999 45544
Q ss_pred --CCcEEEEEeCCCccchh-----ccC--CCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCC--------
Q 000324 1418 --LGMRVVELTGETAMDLK-----LLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-------- 1480 (1665)
Q Consensus 1418 --~~i~v~~l~G~~~~~~~-----~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~-------- 1480 (1665)
.++++..++|+.+...+ .+. .++|+|+||+++....... . ..+++++|+||||+++.++
T Consensus 149 ~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l---~-~~~i~~iVVDEAD~ml~~~knid~~L~ 224 (1638)
T PRK14701 149 ANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM---K-HLKFDFIFVDDVDAFLKASKNIDRSLQ 224 (1638)
T ss_pred cCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH---h-hCCCCEEEEECceeccccccccchhhh
Confidence 35778889999876532 222 3699999999987655432 1 2679999999999997521
Q ss_pred ----chhHHH----HH---------------HHHHHHHhhcCCCCe-EEEEcccCCChHHHHHHhcccCCcEEecCCCCC
Q 000324 1481 ----GPVLEV----IV---------------SRMRYIASQVENKIR-IVALSTSLANAKDLGEWIGATSHGLFNFPPGVR 1536 (1665)
Q Consensus 1481 ----g~~~e~----~~---------------srl~~i~~~~~~~~r-iI~lSATl~n~~dl~~wl~~~~~~~~~f~~~~r 1536 (1665)
.+.+.. ++ .++......++...| ++.+|||++...+....+... -.|..... +
T Consensus 225 llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~--l~f~v~~~-~ 301 (1638)
T PRK14701 225 LLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYREL--LGFEVGSG-R 301 (1638)
T ss_pred cCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcC--eEEEecCC-C
Confidence 222211 11 112222223344555 577999998755555555221 11222211 1
Q ss_pred ccceEEEEeecccchhhHHHHhcChhHHHHHHHHhcCCCCEEEEeCchHH---HHHHHHHHHHhcccCCCcccccccCCc
Q 000324 1537 PVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKY---VRLTAVDLMTYSSMDGDQKSAFLLWPA 1613 (1665)
Q Consensus 1537 pv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~---a~~la~~L~~~~~~~~~~~~~~l~~~~ 1613 (1665)
+ .+.-..+.+....... +.....++..+ +.++||||+|++. |+.++..|.
T Consensus 302 ~-~lr~i~~~yi~~~~~~------k~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~------------------ 354 (1638)
T PRK14701 302 S-ALRNIVDVYLNPEKII------KEHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLL------------------ 354 (1638)
T ss_pred C-CCCCcEEEEEECCHHH------HHHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHH------------------
Confidence 1 1111111111111010 11222333332 4679999999886 477786662
Q ss_pred ccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1614 EEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1614 ~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
..+..+..+||+ |..+++.|++|+++||||
T Consensus 355 -----------------~~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVa 384 (1638)
T PRK14701 355 -----------------EDGFKIELVSAK-----NKKGFDLFEEGEIDYLIG 384 (1638)
T ss_pred -----------------HCCCeEEEecch-----HHHHHHHHHcCCCCEEEE
Confidence 246678999995 999999999999999997
No 168
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.87 E-value=8.6e-21 Score=240.37 Aligned_cols=264 Identities=17% Similarity=0.174 Sum_probs=169.4
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000324 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~ 1418 (1665)
...|+++|.+|++.++.+++ .+++||||+|||+++...+ +.+.. ...+ ++|||+||++|+.|+.++++ .|....
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~-~il~apTGsGKT~i~~~l~-~~~~~-~~~~--~vLilvpt~eL~~Q~~~~l~-~~~~~~ 185 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNR-RLLNLPTSAGKSLIQYLLS-RYYLE-NYEG--KVLIIVPTTSLVTQMIDDFV-DYRLFP 185 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCc-eEEEeCCCCCHHHHHHHHH-HHHHh-cCCC--eEEEEECcHHHHHHHHHHHH-Hhcccc
Confidence 35899999999999988554 8999999999999875533 33233 2233 89999999999999999998 555433
Q ss_pred CcEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhc
Q 000324 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV 1498 (1665)
Q Consensus 1419 ~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~ 1498 (1665)
...+..+.|+.... ..++|+|+||+++....+ ..+.++++||+||||++.+. .++.++ ..+
T Consensus 186 ~~~~~~i~~g~~~~----~~~~I~VaT~qsl~~~~~-----~~~~~~~~iIvDEaH~~~~~---~~~~il-------~~~ 246 (501)
T PHA02558 186 REAMHKIYSGTAKD----TDAPIVVSTWQSAVKQPK-----EWFDQFGMVIVDECHLFTGK---SLTSII-------TKL 246 (501)
T ss_pred ccceeEEecCcccC----CCCCEEEeeHHHHhhchh-----hhccccCEEEEEchhcccch---hHHHHH-------Hhh
Confidence 34454555554332 457999999999864332 24678999999999999743 233333 333
Q ss_pred CCCCeEEEEcccCCChHH----HHHHhcccCCcEEecCC-----CCCccceEEEE--eeccc--------chhhHHHHh-
Q 000324 1499 ENKIRIVALSTSLANAKD----LGEWIGATSHGLFNFPP-----GVRPVPLEIHI--QGVDI--------TNFEARMQA- 1558 (1665)
Q Consensus 1499 ~~~~riI~lSATl~n~~d----l~~wl~~~~~~~~~f~~-----~~rpv~l~i~i--~~~~~--------~~~~~~~~~- 1558 (1665)
++..+++|||||+.+... +..++|... +.+.. .....++.+.. ..++. ..+...+..
T Consensus 247 ~~~~~~lGLTATp~~~~~~~~~~~~~fG~i~---~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l 323 (501)
T PHA02558 247 DNCKFKFGLTGSLRDGKANILQYVGLFGDIF---KPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYI 323 (501)
T ss_pred hccceEEEEeccCCCccccHHHHHHhhCCce---EEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHH
Confidence 456789999999976431 223344211 11100 00001111111 01110 011111100
Q ss_pred cC-h----hHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhc
Q 000324 1559 MT-K----PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLR 1633 (1665)
Q Consensus 1559 ~~-k----~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~ 1633 (1665)
.. . .....+......+.+++|||+++++|+.++..|. ..+
T Consensus 324 ~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~-----------------------------------~~g 368 (501)
T PHA02558 324 TSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLK-----------------------------------KVY 368 (501)
T ss_pred hccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHH-----------------------------------HcC
Confidence 01 1 1111122222356789999999999999997773 234
Q ss_pred ccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1634 HGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1634 ~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
..+.++||+|+..+|..+++.|++|+.+||||
T Consensus 369 ~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLva 400 (501)
T PHA02558 369 DKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVA 400 (501)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEE
Confidence 56899999999999999999999999999986
No 169
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.86 E-value=1.2e-20 Score=254.78 Aligned_cols=270 Identities=17% Similarity=0.122 Sum_probs=170.4
Q ss_pred HHHHHhc--CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHH
Q 000324 1331 LYEALYQ--GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYR 1408 (1665)
Q Consensus 1331 ~~~~l~~--~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~ 1408 (1665)
.++..|. ....|+|+|.++++.++.|.+ ++++||||||||. |.+|++..+.. .+ ++++||+||++||.|+++
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d-~vi~ApTGsGKT~-f~l~~~~~l~~--~g--~~vLIL~PTreLa~Qi~~ 139 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLRGDS-FAIIAPTGVGKTT-FGLAMSLFLAK--KG--KRCYIILPTTLLVIQVAE 139 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhCCCe-EEEECCCCCCHHH-HHHHHHHHHHh--cC--CeEEEEeCHHHHHHHHHH
Confidence 3555554 345899999999999999776 9999999999997 55676665544 23 399999999999999999
Q ss_pred HHHHHhcCCCCcEE---EEEeCCCccchh-----cc-C-CCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCC
Q 000324 1409 DWEIKFGQGLGMRV---VELTGETAMDLK-----LL-E-KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (1665)
Q Consensus 1409 ~~~~~~~~~~~i~v---~~l~G~~~~~~~-----~l-~-~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~ 1478 (1665)
.++ .+....++.+ +.++|+.+...+ .+ . .++|+|+||+++......+. .+++++|+||||.+++
T Consensus 140 ~l~-~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~-----~~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 140 KIS-SLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG-----PKFDFIFVDDVDALLK 213 (1171)
T ss_pred HHH-HHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc-----CCCCEEEEeChHhhhh
Confidence 999 5555555443 457888765532 12 2 37999999999887665421 1899999999999986
Q ss_pred CC----------ch---hHHHHHH---------------HHHHHHhhcCCCCe--EEEEcccC-CChHHHHHHhcccCCc
Q 000324 1479 QG----------GP---VLEVIVS---------------RMRYIASQVENKIR--IVALSTSL-ANAKDLGEWIGATSHG 1527 (1665)
Q Consensus 1479 ~~----------g~---~~e~~~s---------------rl~~i~~~~~~~~r--iI~lSATl-~n~~dl~~wl~~~~~~ 1527 (1665)
.+ |- .++.++. .+..+...++...| ++++|||+ +.... ..++.. ..
T Consensus 214 ~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~-~~l~r~-ll- 290 (1171)
T TIGR01054 214 ASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKR-AKLFRE-LL- 290 (1171)
T ss_pred ccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccH-HHHccc-cc-
Confidence 32 11 1222221 11122223344444 67789995 43211 111111 00
Q ss_pred EEecCCCCCccceEEEEeecccchhhHHHHhcChhHHHHHHHHhcCCCCEEEEeCch---HHHHHHHHHHHHhcccCCCc
Q 000324 1528 LFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSR---KYVRLTAVDLMTYSSMDGDQ 1604 (1665)
Q Consensus 1528 ~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr---~~a~~la~~L~~~~~~~~~~ 1604 (1665)
.+....... .+.--.+.+..... . ...+..++..+ +.++||||+|+ +.|+.++..|.
T Consensus 291 ~~~v~~~~~--~~r~I~~~~~~~~~--~-----~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~--------- 350 (1171)
T TIGR01054 291 GFEVGGGSD--TLRNVVDVYVEDED--L-----KETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLE--------- 350 (1171)
T ss_pred ceEecCccc--cccceEEEEEeccc--H-----HHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHH---------
Confidence 111111111 11100111100000 0 11222333332 46799999999 99999997772
Q ss_pred ccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1605 KSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1605 ~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
..+..+..+||+|++ .+++.|++|+++||||
T Consensus 351 --------------------------~~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVa 381 (1171)
T TIGR01054 351 --------------------------NHGVKAVAYHATKPK----EDYEKFAEGEIDVLIG 381 (1171)
T ss_pred --------------------------hCCceEEEEeCCCCH----HHHHHHHcCCCCEEEE
Confidence 245678999999973 6899999999999997
No 170
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.86 E-value=6.1e-20 Score=235.48 Aligned_cols=307 Identities=19% Similarity=0.242 Sum_probs=225.3
Q ss_pred CCCHHHHHHHHHHHcC---CC--cEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000324 495 QLNRVQSRVYKSALSS---AD--NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~---~~--nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (1665)
.-|+=|..||..+... .. +=||||.-|-|||-+|+-|++..++. +..+.+++||--||+|-+++
T Consensus 594 eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~-----------GKQVAvLVPTTlLA~QHy~t 662 (1139)
T COG1197 594 EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD-----------GKQVAVLVPTTLLAQQHYET 662 (1139)
T ss_pred cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC-----------CCeEEEEcccHHhHHHHHHH
Confidence 5689999999988643 22 45999999999999999999998865 45799999999999999999
Q ss_pred HHHhhccCCcEEEEEECCCcccHhh-------hccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchH
Q 000324 570 LSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPV 642 (1665)
Q Consensus 570 ~~~~~~~~gi~V~~ltGd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~ 642 (1665)
|+++|+.++++|..+..-.+...+. ....+|||+|.- |+.+. ..+.+++|+||||=|+.+ -.
T Consensus 663 FkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr----LL~kd---v~FkdLGLlIIDEEqRFG----Vk 731 (1139)
T COG1197 663 FKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR----LLSKD---VKFKDLGLLIIDEEQRFG----VK 731 (1139)
T ss_pred HHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH----hhCCC---cEEecCCeEEEechhhcC----cc
Confidence 9999999999999998765543321 247899999964 33333 357789999999999764 22
Q ss_pred HHHHHHHHHHHHhhccCCeeEEEEcccCCChHHH-HHHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHHHHH
Q 000324 643 LESIVARTVRQIETTKEHIRLVGLSATLPNYEDV-ALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMND 721 (1665)
Q Consensus 643 le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv-~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~ 721 (1665)
-. ..++....++-++-||||.= +.-+ ....+... -.++. .+..+..|+..++..+...
T Consensus 732 ~K-------EkLK~Lr~~VDvLTLSATPI-PRTL~Msm~GiRd-lSvI~-TPP~~R~pV~T~V~~~d~~----------- 790 (1139)
T COG1197 732 HK-------EKLKELRANVDVLTLSATPI-PRTLNMSLSGIRD-LSVIA-TPPEDRLPVKTFVSEYDDL----------- 790 (1139)
T ss_pred HH-------HHHHHHhccCcEEEeeCCCC-cchHHHHHhcchh-hhhcc-CCCCCCcceEEEEecCChH-----------
Confidence 22 22233467899999999942 2222 12222210 11111 1222333444433322211
Q ss_pred HHHHHH-HHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEe
Q 000324 722 LCYEKV-VAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIH 800 (1665)
Q Consensus 722 ~~~~~i-~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~ 800 (1665)
.+.+.+ .+...++|+-..+|..+..++.+..|++.-.+. .|++-
T Consensus 791 ~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEa-----------------------------------rI~va 835 (1139)
T COG1197 791 LIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEA-----------------------------------RIAVA 835 (1139)
T ss_pred HHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCce-----------------------------------EEEEe
Confidence 122222 244558999888899999999999998865432 48889
Q ss_pred cCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCce
Q 000324 801 HAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYG 880 (1665)
Q Consensus 801 Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G 880 (1665)
||.|+..+-+.++..|-+|..+|||||.+.+.|||+|+.+-+|- .+.. -+..++..|.-||.||.. ..|
T Consensus 836 HGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiII----e~AD-----~fGLsQLyQLRGRVGRS~--~~A 904 (1139)
T COG1197 836 HGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIII----ERAD-----KFGLAQLYQLRGRVGRSN--KQA 904 (1139)
T ss_pred ecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEE----eccc-----cccHHHHHHhccccCCcc--ceE
Confidence 99999999999999999999999999999999999999866554 3333 257899999999999965 889
Q ss_pred EEEEEeCCCc
Q 000324 881 EGIIITGHSE 890 (1665)
Q Consensus 881 ~~iil~~~~~ 890 (1665)
.||.++.+.+
T Consensus 905 YAYfl~p~~k 914 (1139)
T COG1197 905 YAYFLYPPQK 914 (1139)
T ss_pred EEEEeecCcc
Confidence 9999998744
No 171
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.85 E-value=5.1e-20 Score=240.46 Aligned_cols=250 Identities=18% Similarity=0.240 Sum_probs=174.8
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchhc
Q 000324 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKL 1435 (1665)
Q Consensus 1356 ~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~ 1435 (1665)
++.+++++||||||||.++.++++..... .+ +++++.|+|++|.|+++++.+.++...|..|+...+..+ ..
T Consensus 16 ~~~~vIi~a~TGSGKTT~vpl~lL~~~~~---~~--~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~---~~ 87 (819)
T TIGR01970 16 AHPQVVLEAPPGAGKSTAVPLALLDAPGI---GG--KIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN---KV 87 (819)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHhhcc---CC--eEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc---cc
Confidence 46679999999999999999999977632 33 899999999999999999987787767777776555422 22
Q ss_pred cCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccc-cCC-CCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCC
Q 000324 1436 LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHL-IGG-QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1436 l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~-l~~-~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n 1513 (1665)
-...+|+|+||+++..++.. ...+.++++|||||+|. ..+ +.+ +.-++.+...++.+.|+|+||||++.
T Consensus 88 s~~t~I~v~T~G~Llr~l~~---d~~L~~v~~VIiDEaHER~L~~Dl~------L~ll~~i~~~lr~dlqlIlmSATl~~ 158 (819)
T TIGR01970 88 SRRTRLEVVTEGILTRMIQD---DPELDGVGALIFDEFHERSLDADLG------LALALDVQSSLREDLKILAMSATLDG 158 (819)
T ss_pred CCCCcEEEECCcHHHHHHhh---CcccccCCEEEEeccchhhhccchH------HHHHHHHHHhcCCCceEEEEeCCCCH
Confidence 24579999999999877654 45689999999999994 443 321 22233344445778999999999976
Q ss_pred hHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcChhHHHHHHHHh-cCCCCEEEEeCchHHHHHHHH
Q 000324 1514 AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHA-KNEKPALVFVPSRKYVRLTAV 1592 (1665)
Q Consensus 1514 ~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l-~~~~~~IVFv~sr~~a~~la~ 1592 (1665)
. .+.++++.. .++.. ..+..|++++........ .+. ......+...+ ...+.+|||||++.+++.++.
T Consensus 159 ~-~l~~~l~~~--~vI~~--~gr~~pVe~~y~~~~~~~---~~~---~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~ 227 (819)
T TIGR01970 159 E-RLSSLLPDA--PVVES--EGRSFPVEIRYLPLRGDQ---RLE---DAVSRAVEHALASETGSILVFLPGQAEIRRVQE 227 (819)
T ss_pred H-HHHHHcCCC--cEEEe--cCcceeeeeEEeecchhh---hHH---HHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHH
Confidence 4 467777532 22322 224445554443221111 010 00111122221 235789999999999999998
Q ss_pred HHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1593 DLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1593 ~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
.|..... .+..|..+||+|++.+|..+++.|++|+.+||||
T Consensus 228 ~L~~~~~--------------------------------~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVA 268 (819)
T TIGR01970 228 QLAERLD--------------------------------SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLA 268 (819)
T ss_pred HHHhhcC--------------------------------CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEe
Confidence 7742110 1345889999999999999999999999999997
No 172
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.85 E-value=4.1e-20 Score=242.10 Aligned_cols=249 Identities=17% Similarity=0.203 Sum_probs=173.9
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchhcc
Q 000324 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLL 1436 (1665)
Q Consensus 1357 ~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~l 1436 (1665)
+.+++++||||||||+++.++++..... .+ ++++++|+|++|.|+++.+.+.++...|..|+...++.+.. -
T Consensus 20 ~~~vvv~A~TGSGKTt~~pl~lL~~~~~---~~--~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~~---~ 91 (812)
T PRK11664 20 APQVLLKAPTGAGKSTWLPLQLLQHGGI---NG--KIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKV---G 91 (812)
T ss_pred CCCEEEEcCCCCCHHHHHHHHHHHcCCc---CC--eEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcccc---C
Confidence 4569999999999999999999865322 33 89999999999999999998778777788888777654321 2
Q ss_pred CCCcEEEEChhhHHHHHHhhhccccCCCccEEEeeccccc-CC-CCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh
Q 000324 1437 EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI-GG-QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA 1514 (1665)
Q Consensus 1437 ~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l-~~-~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~ 1514 (1665)
...+|+|+||+++..++.. ...+.++++||+||+|.. .+ +. .+.-+..+...++.+.|+|+||||++..
T Consensus 92 ~~t~I~v~T~G~Llr~l~~---d~~L~~v~~IIlDEaHER~l~~Dl------~L~ll~~i~~~lr~~lqlilmSATl~~~ 162 (812)
T PRK11664 92 PNTRLEVVTEGILTRMIQR---DPELSGVGLVILDEFHERSLQADL------ALALLLDVQQGLRDDLKLLIMSATLDND 162 (812)
T ss_pred CCCcEEEEChhHHHHHHhh---CCCcCcCcEEEEcCCCccccccch------HHHHHHHHHHhCCccceEEEEecCCCHH
Confidence 3458999999999877664 346899999999999963 22 22 2222334445567789999999999654
Q ss_pred HHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcChhHHHHHHHHh-cCCCCEEEEeCchHHHHHHHHH
Q 000324 1515 KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHA-KNEKPALVFVPSRKYVRLTAVD 1593 (1665)
Q Consensus 1515 ~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l-~~~~~~IVFv~sr~~a~~la~~ 1593 (1665)
.+.++++.. .++.. ..+..|++.+....+.... .. ......+...+ ...+.+|||||++++++.++..
T Consensus 163 -~l~~~~~~~--~~I~~--~gr~~pV~~~y~~~~~~~~---~~---~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~ 231 (812)
T PRK11664 163 -RLQQLLPDA--PVIVS--EGRSFPVERRYQPLPAHQR---FD---EAVARATAELLRQESGSLLLFLPGVGEIQRVQEQ 231 (812)
T ss_pred -HHHHhcCCC--CEEEe--cCccccceEEeccCchhhh---HH---HHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHH
Confidence 567776532 22222 2244455544432221111 10 01111222222 2357899999999999999988
Q ss_pred HHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1594 LMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1594 L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
|..... .+..|..+||+|++.+|..+++.|++|+.+||||
T Consensus 232 L~~~~~--------------------------------~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvA 271 (812)
T PRK11664 232 LASRVA--------------------------------SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLA 271 (812)
T ss_pred HHHhcc--------------------------------CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEe
Confidence 842110 1244888999999999999999999999999997
No 173
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.85 E-value=2.7e-20 Score=209.13 Aligned_cols=177 Identities=25% Similarity=0.377 Sum_probs=140.8
Q ss_pred cchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHH
Q 000324 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (1665)
Q Consensus 1327 L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q 1405 (1665)
++..+++.+.. |+..|+++|.++++.++++ .|+++++|||+|||++|.+|++..+.......+++++|++|+++|+.|
T Consensus 6 ~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~-~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q 84 (203)
T cd00268 6 LSPELLRGIYALGFEKPTPIQARAIPPLLSG-RDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQ 84 (203)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHH
Confidence 34456666665 7999999999999999985 559999999999999999999999988521234599999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEeCCCccc--hhcc-CCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCch
Q 000324 1406 RYRDWEIKFGQGLGMRVVELTGETAMD--LKLL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 1482 (1665)
Q Consensus 1406 ~~~~~~~~~~~~~~i~v~~l~G~~~~~--~~~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~ 1482 (1665)
+...+. .+....++++..++|+.+.. ...+ .+++|+|+||+++..++.+. ...+.+++++|+||+|.+.+..
T Consensus 85 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~l~~lIvDE~h~~~~~~-- 159 (203)
T cd00268 85 IAEVAR-KLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERG--KLDLSKVKYLVLDEADRMLDMG-- 159 (203)
T ss_pred HHHHHH-HHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcC--CCChhhCCEEEEeChHHhhccC--
Confidence 999998 56655688999999987753 2233 37799999999998888763 3567899999999999987543
Q ss_pred hHHHHHHHHHHHHhhcCCCCeEEEEcccCCC
Q 000324 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1483 ~~e~~~srl~~i~~~~~~~~riI~lSATl~n 1513 (1665)
+...+..+.+.++.+.+++++|||+++
T Consensus 160 ----~~~~~~~~~~~l~~~~~~~~~SAT~~~ 186 (203)
T cd00268 160 ----FEDQIREILKLLPKDRQTLLFSATMPK 186 (203)
T ss_pred ----hHHHHHHHHHhCCcccEEEEEeccCCH
Confidence 222233333445668999999999985
No 174
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.85 E-value=7.8e-19 Score=230.30 Aligned_cols=319 Identities=19% Similarity=0.229 Sum_probs=192.8
Q ss_pred CCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000324 495 QLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (1665)
.|.|+|..+...++.. ...+|++-.+|.|||..+.+.+-..+.... ..+++||||. +|+.|+..++.++
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~---------~~rvLIVvP~-sL~~QW~~El~~k 221 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGR---------AERVLILVPE-TLQHQWLVEMLRR 221 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCC---------CCcEEEEcCH-HHHHHHHHHHHHH
Confidence 5899999998877654 346999999999999999666555443321 2379999997 8999999998776
Q ss_pred hccCCcEEEEEECCCccc-----HhhhccccEEEeChhhHHHHHhhc--CCCccccceeEEEEecccccccC---CchHH
Q 000324 574 LQMYDVKVRELSGDQTLT-----RQQIEETQIIVTTPEKWDIITRKS--GDRTYTQLVKLLIIDEIHLLHDN---RGPVL 643 (1665)
Q Consensus 574 ~~~~gi~V~~ltGd~~~~-----~~~~~~~~IiV~TPekld~l~r~~--~~~~~l~~v~liIiDEaH~l~d~---rg~~l 643 (1665)
|. +.+..+.++.... .......+++|+|.+.+ .+.. .....-..+++||+||||++... ....+
T Consensus 222 F~---l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l---~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y 295 (956)
T PRK04914 222 FN---LRFSLFDEERYAEAQHDADNPFETEQLVICSLDFL---RRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREY 295 (956)
T ss_pred hC---CCeEEEcCcchhhhcccccCccccCcEEEEEHHHh---hhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHH
Confidence 63 4454444432111 01223578999998843 2211 00011235799999999999631 11122
Q ss_pred HHHHHHHHHHHhhccCCeeEEEEcccCCC--hHHH---------------HHHHh-----------------ccc-c---
Q 000324 644 ESIVARTVRQIETTKEHIRLVGLSATLPN--YEDV---------------ALFLR-----------------VNL-E--- 685 (1665)
Q Consensus 644 e~iv~r~~~~~~~~~~~~riV~lSATl~n--~~dv---------------~~~l~-----------------~~~-~--- 685 (1665)
. .+..+. .....+++||||.-. .+++ ..|.. ..+ .
T Consensus 296 ~-~v~~La------~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~ 368 (956)
T PRK04914 296 Q-VVEQLA------EVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDA 368 (956)
T ss_pred H-HHHHHh------hccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHH
Confidence 2 222221 123467999999541 1111 11110 000 0
Q ss_pred -------------------------------------------CceEEecCCCcc---cc-ceEEEEeeecCchhH----
Q 000324 686 -------------------------------------------KGLFYFDNSYRP---VP-LSQQYIGIQVKKPLQ---- 714 (1665)
Q Consensus 686 -------------------------------------------~~~~~f~~~~rp---v~-l~~~~~~~~~~~~~~---- 714 (1665)
.+-+.|.....- .| ...+.+.+.......
T Consensus 369 ~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~ 448 (956)
T PRK04914 369 LNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIK 448 (956)
T ss_pred HHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHH
Confidence 000011110000 00 000011111000000
Q ss_pred ---------------HHHHH------------HHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhcccccccc
Q 000324 715 ---------------RFQLM------------NDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFL 767 (1665)
Q Consensus 715 ---------------~~~~~------------~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~ 767 (1665)
.+..+ .+.+.+ ++....+.++||||+++..+..++..|....
T Consensus 449 ~~~~~~~~~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~-~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~---------- 517 (956)
T PRK04914 449 VSLEARARDMLYPEQIYQEFEDNATWWNFDPRVEWLID-FLKSHRSEKVLVICAKAATALQLEQALRERE---------- 517 (956)
T ss_pred HhHHHHHHhhcCHHHHHHHHhhhhhccccCHHHHHHHH-HHHhcCCCeEEEEeCcHHHHHHHHHHHhhcc----------
Confidence 00000 001111 1222336799999999999999998885421
Q ss_pred ccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCC--CCCeEEeccccccccCCCceEEEEec
Q 000324 768 KEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDG--HVQVLVSTATLAWGVNLPAHTVIIKG 845 (1665)
Q Consensus 768 ~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g--~i~VLVaT~tla~GVdlP~v~vVI~~ 845 (1665)
.+.+..+||+|+..+|..+.+.|+++ ..+|||||+++++|+|++.+++||+
T Consensus 518 --------------------------Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VIn- 570 (956)
T PRK04914 518 --------------------------GIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVL- 570 (956)
T ss_pred --------------------------CeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEE-
Confidence 12356679999999999999999974 6999999999999999999999999
Q ss_pred ccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEE
Q 000324 846 TQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885 (1665)
Q Consensus 846 t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil 885 (1665)
||.|. ++..|.||+||+||.|. .|.+.++
T Consensus 571 ---fDlP~------nP~~~eQRIGR~~RiGQ--~~~V~i~ 599 (956)
T PRK04914 571 ---FDLPF------NPDLLEQRIGRLDRIGQ--KHDIQIH 599 (956)
T ss_pred ---ecCCC------CHHHHHHHhcccccCCC--CceEEEE
Confidence 77775 78889999999999984 4544433
No 175
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=2.2e-19 Score=228.47 Aligned_cols=127 Identities=17% Similarity=0.125 Sum_probs=97.2
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (1665)
.++++|--.--. ++.+ -|..++||+|||++|.+|++..+... ..+.+++|++.||.|.++.+...+
T Consensus 82 ~~ydvQliGg~~-Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~G-----------~~V~VvTpn~yLA~qd~e~m~~l~ 147 (896)
T PRK13104 82 RHFDVQLIGGMV-LHEG--NIAEMRTGEGKTLVATLPAYLNAISG-----------RGVHIVTVNDYLAKRDSQWMKPIY 147 (896)
T ss_pred CcchHHHhhhhh-hccC--ccccccCCCCchHHHHHHHHHHHhcC-----------CCEEEEcCCHHHHHHHHHHHHHHh
Confidence 445666544333 3322 48899999999999999999766432 248999999999999999999999
Q ss_pred ccCCcEEEEEECCCcccHh-hhccccEEEeChhhH--HHHHhhcCC---CccccceeEEEEeccccc
Q 000324 575 QMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKSGD---RTYTQLVKLLIIDEIHLL 635 (1665)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~~-~~~~~~IiV~TPekl--d~l~r~~~~---~~~l~~v~liIiDEaH~l 635 (1665)
..+|++|+.++|+.+...+ ....++|+|+||+++ |.|..+... ......+.++||||||.+
T Consensus 148 ~~lGLtv~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsi 214 (896)
T PRK13104 148 EFLGLTVGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSI 214 (896)
T ss_pred cccCceEEEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhh
Confidence 9999999999999876543 334789999999994 666554221 112367899999999976
No 176
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.84 E-value=6.5e-20 Score=205.99 Aligned_cols=182 Identities=21% Similarity=0.286 Sum_probs=143.0
Q ss_pred ChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccH
Q 000324 483 PEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMK 560 (1665)
Q Consensus 483 p~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~r 560 (1665)
++.....+ .|+..|+++|.++++.+++ ++|++++||||+|||.+++++++..+..... ..+++++|++|++
T Consensus 7 ~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~------~~~~~viii~p~~ 79 (203)
T cd00268 7 SPELLRGIYALGFEKPTPIQARAIPPLLS-GRDVIGQAQTGSGKTAAFLIPILEKLDPSPK------KDGPQALILAPTR 79 (203)
T ss_pred CHHHHHHHHHcCCCCCCHHHHHHHHHHhc-CCcEEEECCCCCcHHHHHHHHHHHHHHhhcc------cCCceEEEEcCCH
Confidence 44444444 4789999999999999887 4679999999999999999999998876421 1356899999999
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEEECCCcccHh--hh-ccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc
Q 000324 561 ALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QI-EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (1665)
Q Consensus 561 aLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~--~~-~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d 637 (1665)
+|+.|+...+.......++++..++|+...... .. .+++|+|+||+++..+.++.. ..+..++++|+||+|.+.+
T Consensus 80 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~--~~~~~l~~lIvDE~h~~~~ 157 (203)
T cd00268 80 ELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK--LDLSKVKYLVLDEADRMLD 157 (203)
T ss_pred HHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC--CChhhCCEEEEeChHHhhc
Confidence 999999999998877778999999998875432 22 378999999999865555443 4678899999999999876
Q ss_pred -CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhc
Q 000324 638 -NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV 682 (1665)
Q Consensus 638 -~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~ 682 (1665)
.++..+..++.+ ...+.+++++|||+++ ++..++..
T Consensus 158 ~~~~~~~~~~~~~-------l~~~~~~~~~SAT~~~--~~~~~~~~ 194 (203)
T cd00268 158 MGFEDQIREILKL-------LPKDRQTLLFSATMPK--EVRDLARK 194 (203)
T ss_pred cChHHHHHHHHHh-------CCcccEEEEEeccCCH--HHHHHHHH
Confidence 456666655553 3458999999999984 45555544
No 177
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.84 E-value=3.4e-19 Score=239.00 Aligned_cols=336 Identities=17% Similarity=0.207 Sum_probs=193.9
Q ss_pred CCCCHHHHHHHHHHH----cCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000324 494 TQLNRVQSRVYKSAL----SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l----~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (1665)
..++++|.+++..+. ++.++.|+++|||||||.+++..+.+.+... ...+||+++|+++|+.|..+.
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~---------~~~rVLfLvDR~~L~~Qa~~~ 482 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAK---------RFRRILFLVDRSALGEQAEDA 482 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcC---------ccCeEEEEecHHHHHHHHHHH
Confidence 368999999998765 3456799999999999998755554443322 134899999999999999999
Q ss_pred HHHhhccCCcEEEEEECCCcccHh-hhccccEEEeChhhHHH-HHhhc--CCCccccceeEEEEeccccccc-CC--c--
Q 000324 570 LSNRLQMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKWDI-ITRKS--GDRTYTQLVKLLIIDEIHLLHD-NR--G-- 640 (1665)
Q Consensus 570 ~~~~~~~~gi~V~~ltGd~~~~~~-~~~~~~IiV~TPekld~-l~r~~--~~~~~l~~v~liIiDEaH~l~d-~r--g-- 640 (1665)
|.......+..+..+.+-..+... .....+|+|||..++.. +.... .....+..+++||+||||+-.. +. +
T Consensus 483 F~~~~~~~~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~ 562 (1123)
T PRK11448 483 FKDTKIEGDQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEG 562 (1123)
T ss_pred HHhcccccccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccc
Confidence 987532212122112111111111 12357899999998522 22111 1113467889999999998421 00 0
Q ss_pred ----hHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEec-------C---CCc-cccceEEEE
Q 000324 641 ----PVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFD-------N---SYR-PVPLSQQYI 705 (1665)
Q Consensus 641 ----~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~-------~---~~r-pv~l~~~~~ 705 (1665)
.............+.. . +...||||||.. .....+++. + ++.+. + .+. |......+.
T Consensus 563 ~~~~~~~~~~~~~yr~iL~y-F-dA~~IGLTATP~--r~t~~~FG~-p---v~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~ 634 (1123)
T PRK11448 563 ELQFRDQLDYVSKYRRVLDY-F-DAVKIGLTATPA--LHTTEIFGE-P---VYTYSYREAVIDGYLIDHEPPIRIETRLS 634 (1123)
T ss_pred hhccchhhhHHHHHHHHHhh-c-CccEEEEecCCc--cchhHHhCC-e---eEEeeHHHHHhcCCcccCcCCEEEEEEec
Confidence 0001111222222221 1 356799999953 233344442 1 11110 0 000 111111000
Q ss_pred --eeecCc------------h------hH----HHHH---------HHHHHHHHHHHHh---CCCeEEEEecChhHHHHH
Q 000324 706 --GIQVKK------------P------LQ----RFQL---------MNDLCYEKVVAVA---GKHQVLIFVHSRKETAKT 749 (1665)
Q Consensus 706 --~~~~~~------------~------~~----~~~~---------~~~~~~~~i~~~~---~~~~vLVFv~sr~~~~~~ 749 (1665)
|+.... . .. .... .++.+.+.+.... +.+++||||.++.+|..+
T Consensus 635 ~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i 714 (1123)
T PRK11448 635 QEGIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMV 714 (1123)
T ss_pred cccccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHH
Confidence 000000 0 00 0001 1112222232222 247999999999999999
Q ss_pred HHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCC-CeEEecc
Q 000324 750 ARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV-QVLVSTA 828 (1665)
Q Consensus 750 a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i-~VLVaT~ 828 (1665)
+..|.+....... ..-...+..+||+++ ++..+++.|+++.. +|+|+++
T Consensus 715 ~~~L~~~f~~~~~----------------------------~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvd 764 (1123)
T PRK11448 715 VRLLKEAFKKKYG----------------------------QVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVD 764 (1123)
T ss_pred HHHHHHHHHhhcC----------------------------CcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEec
Confidence 9988765311100 000112445677775 56789999999887 6999999
Q ss_pred ccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCC-CceEEEEEe
Q 000324 829 TLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD-SYGEGIIIT 886 (1665)
Q Consensus 829 tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d-~~G~~iil~ 886 (1665)
.+.+|+|+|.+.+||. +.+.. |...|+||+||+.|.-.+ .+-.++|+-
T Consensus 765 mL~TG~DvP~v~~vVf----~rpvk------S~~lf~QmIGRgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 765 LLTTGIDVPSICNLVF----LRRVR------SRILYEQMLGRATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred ccccCCCcccccEEEE----ecCCC------CHHHHHHHHhhhccCCccCCCceEEEEe
Confidence 9999999999999997 67665 899999999999996432 233444443
No 178
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=2.1e-20 Score=198.43 Aligned_cols=185 Identities=22% Similarity=0.303 Sum_probs=154.2
Q ss_pred cchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHH
Q 000324 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (1665)
Q Consensus 1327 L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q 1405 (1665)
|++++++++-. ||.+|+.+|.+|+|....|-| |+.+|..|.|||.+|.++-|+.+.. -.+.+.++++|+|||||.|
T Consensus 49 lkpellraivdcgfehpsevqhecipqailgmd-vlcqaksgmgktavfvl~tlqqiep--v~g~vsvlvmchtrelafq 125 (387)
T KOG0329|consen 49 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMD-VLCQAKSGMGKTAVFVLATLQQIEP--VDGQVSVLVMCHTRELAFQ 125 (387)
T ss_pred cCHHHHHHHHhccCCCchHhhhhhhhHHhhcch-hheecccCCCceeeeehhhhhhcCC--CCCeEEEEEEeccHHHHHH
Confidence 56678888877 999999999999999888777 9999999999999999999988876 3445689999999999999
Q ss_pred HHHHHHHHhcCC-CCcEEEEEeCCCccc--hhccCC-CcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCc
Q 000324 1406 RYRDWEIKFGQG-LGMRVVELTGETAMD--LKLLEK-GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (1665)
Q Consensus 1406 ~~~~~~~~~~~~-~~i~v~~l~G~~~~~--~~~l~~-~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g 1481 (1665)
+.+++. +|+++ .++++..+.||.+.. ...+++ +||+|+||+++..+.|. ....+.+++.+|+||||.++++-.
T Consensus 126 i~~ey~-rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~--k~l~lk~vkhFvlDEcdkmle~lD 202 (387)
T KOG0329|consen 126 ISKEYE-RFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRN--RSLNLKNVKHFVLDECDKMLEQLD 202 (387)
T ss_pred HHHHHH-HHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHh--ccCchhhcceeehhhHHHHHHHHH
Confidence 999998 88877 689999999998765 444444 49999999999999997 567899999999999998865321
Q ss_pred hhHHHHHHHHHHHHhhcCCCCeEEEEcccCCC-hHHHHHHhc
Q 000324 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIG 1522 (1665)
Q Consensus 1482 ~~~e~~~srl~~i~~~~~~~~riI~lSATl~n-~~dl~~wl~ 1522 (1665)
.-..+..|.+.+|...|+..+|||++. .+-++..+.
T Consensus 203 -----MrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFm 239 (387)
T KOG0329|consen 203 -----MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFM 239 (387)
T ss_pred -----HHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhh
Confidence 345566777788999999999999987 344554443
No 179
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=6.9e-19 Score=223.37 Aligned_cols=352 Identities=16% Similarity=0.171 Sum_probs=220.7
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (1665)
.++++|--.--.+ +.+ -|.-..||+|||+++.+|++..... +..+-+++|+--||.+-++.+...+
T Consensus 80 ~~~dvQlig~l~l-~~G--~iaEm~TGEGKTLvA~l~a~l~al~-----------G~~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 80 RPFDVQIIGGIVL-HEG--NIAEMKTGEGKTLTATLPVYLNALT-----------GKGVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred CCchhHHHHHHHH-hcC--CcccccCCCCCcHHHHHHHHHHHHc-----------CCCeEEEeccHHHHHhhHHHHHHHH
Confidence 5667776665443 333 3889999999999999999887765 3468899999999999999999999
Q ss_pred ccCCcEEEEEECCCcccH-hhhccccEEEeChhhH--HHHHhhc---CCCccccceeEEEEecccccc-c-CCch-----
Q 000324 575 QMYDVKVRELSGDQTLTR-QQIEETQIIVTTPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLLH-D-NRGP----- 641 (1665)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~-~~~~~~~IiV~TPekl--d~l~r~~---~~~~~l~~v~liIiDEaH~l~-d-~rg~----- 641 (1665)
..+|++|+.++|+.+... +..-.++|+++|...+ |.|..+. .+........+.||||||.++ | .|.|
T Consensus 146 ~~LGl~vg~i~~~~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg 225 (796)
T PRK12906 146 RWLGLTVGLNLNSMSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISG 225 (796)
T ss_pred HhcCCeEEEeCCCCCHHHHHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCC
Confidence 999999999999865543 3456899999999875 6555442 122234567889999999662 2 1211
Q ss_pred ------HHHHHHHHHHHHHhhc----------------cCCeeEEEEcc----------cCCC---hH--HHHHHHhccc
Q 000324 642 ------VLESIVARTVRQIETT----------------KEHIRLVGLSA----------TLPN---YE--DVALFLRVNL 684 (1665)
Q Consensus 642 ------~le~iv~r~~~~~~~~----------------~~~~riV~lSA----------Tl~n---~~--dv~~~l~~~~ 684 (1665)
.+-..+.++...+... ....+.|.++. .++| .+ .+..|+....
T Consensus 226 ~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al 305 (796)
T PRK12906 226 QAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQAL 305 (796)
T ss_pred CCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHH
Confidence 1111222222211110 01122233321 0111 01 1223321100
Q ss_pred ---------------cCceEEe----------------------------------------------------------
Q 000324 685 ---------------EKGLFYF---------------------------------------------------------- 691 (1665)
Q Consensus 685 ---------------~~~~~~f---------------------------------------------------------- 691 (1665)
...+..+
T Consensus 306 ~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa 385 (796)
T PRK12906 306 RANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTA 385 (796)
T ss_pred HHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCC
Confidence 0000001
Q ss_pred -----------------cCCCccccceEEEEeeecCchhHHHHHHHHHHHHHHH-HHhCCCeEEEEecChhHHHHHHHHH
Q 000324 692 -----------------DNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVV-AVAGKHQVLIFVHSRKETAKTARAI 753 (1665)
Q Consensus 692 -----------------~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~vLVFv~sr~~~~~~a~~L 753 (1665)
-|..+|+.....--.+. .....++.+ +.+.+. .+..+.|+||||+|+..++.++..|
T Consensus 386 ~~e~~Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~-~t~~~K~~a----l~~~i~~~~~~g~pvLI~t~si~~se~ls~~L 460 (796)
T PRK12906 386 KTEEEEFREIYNMEVITIPTNRPVIRKDSPDLLY-PTLDSKFNA----VVKEIKERHAKGQPVLVGTVAIESSERLSHLL 460 (796)
T ss_pred HHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEE-cCHHHHHHH----HHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHH
Confidence 11112211100000000 001112222 222232 2345789999999999999999999
Q ss_pred HHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccc
Q 000324 754 RDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWG 833 (1665)
Q Consensus 754 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~G 833 (1665)
.+.+.. ...+||++...++..+.+.++.|. |+|||+.++||
T Consensus 461 ~~~gi~-------------------------------------~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRG 501 (796)
T PRK12906 461 DEAGIP-------------------------------------HAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRG 501 (796)
T ss_pred HHCCCC-------------------------------------eeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCC
Confidence 886533 346699999888888888888886 99999999999
Q ss_pred cCCC---ceE-----EEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCc-H-H-----HHHHhh
Q 000324 834 VNLP---AHT-----VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE-L-R-----YYLSLM 898 (1665)
Q Consensus 834 VdlP---~v~-----vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~-~-~-----~y~~ll 898 (1665)
.|++ ++. +||. ++.+. |...+.|+.|||||.| .+|.+..+++-++ + . .+.+++
T Consensus 502 tDI~l~~~V~~~GGLhVI~----te~pe------s~ri~~Ql~GRtGRqG--~~G~s~~~~sleD~l~~~f~~~~~~~~~ 569 (796)
T PRK12906 502 TDIKLGPGVKELGGLAVIG----TERHE------SRRIDNQLRGRSGRQG--DPGSSRFYLSLEDDLMRRFGSDRVKAFL 569 (796)
T ss_pred CCCCCCcchhhhCCcEEEe----eecCC------cHHHHHHHhhhhccCC--CCcceEEEEeccchHHHhhCcHHHHHHH
Confidence 9995 788 9998 77665 7889999999999988 8899988887653 1 1 122232
Q ss_pred ------cCCCccccchhHhhHHHH
Q 000324 899 ------NQQLPIESQFVSKLADQL 916 (1665)
Q Consensus 899 ------~~~~piES~l~~~l~d~l 916 (1665)
....||++.+.....+..
T Consensus 570 ~~~~~~~~~~~i~~~~~~~~i~~a 593 (796)
T PRK12906 570 DRLGMNDDDQVIESRMITRQVESA 593 (796)
T ss_pred HHcCCCCCCCcccchHHHHHHHHH
Confidence 345788888876655543
No 180
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.83 E-value=2.1e-19 Score=227.23 Aligned_cols=401 Identities=21% Similarity=0.207 Sum_probs=263.2
Q ss_pred CCCCCHHHHHHHHHHHcC---CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000324 493 MTQLNRVQSRVYKSALSS---ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (1665)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~---~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (1665)
...+|+-|+.++..+..+ ....++.+.||||||.+|+-+|-..+.++ ..+|+++|-.+|..|+..+
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G-----------kqvLvLVPEI~Ltpq~~~r 264 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG-----------KQVLVLVPEIALTPQLLAR 264 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC-----------CEEEEEeccccchHHHHHH
Confidence 347899999999998766 46789999999999999999998888763 4799999999999999999
Q ss_pred HHHhhccCCcEEEEEECCCcccHhh-------hccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc--CCc
Q 000324 570 LSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD--NRG 640 (1665)
Q Consensus 570 ~~~~~~~~gi~V~~ltGd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d--~rg 640 (1665)
|+.+|+ .+|.+++++.+...+. ..+.+|+|+| ++.-...+.++++|||||=|--.- ..+
T Consensus 265 f~~rFg---~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt---------RSAlF~Pf~~LGLIIvDEEHD~sYKq~~~ 332 (730)
T COG1198 265 FKARFG---AKVAVLHSGLSPGERYRVWRRARRGEARVVIGT---------RSALFLPFKNLGLIIVDEEHDSSYKQEDG 332 (730)
T ss_pred HHHHhC---CChhhhcccCChHHHHHHHHHHhcCCceEEEEe---------chhhcCchhhccEEEEeccccccccCCcC
Confidence 999885 7899999987765432 3578999999 333345688999999999996532 334
Q ss_pred hHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhcccc-CceEEecCCCc-cccceEEEEeeecCchhHHHHH
Q 000324 641 PVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLE-KGLFYFDNSYR-PVPLSQQYIGIQVKKPLQRFQL 718 (1665)
Q Consensus 641 ~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~-~~~~~f~~~~r-pv~l~~~~~~~~~~~~~~~~~~ 718 (1665)
|.+. +|-.........++.+|+-|||. . +..|.++... ...+.+...+. ..+-...++.......... ..
T Consensus 333 prYh---ARdvA~~Ra~~~~~pvvLgSATP-S---LES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~-~~ 404 (730)
T COG1198 333 PRYH---ARDVAVLRAKKENAPVVLGSATP-S---LESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETG-RS 404 (730)
T ss_pred CCcC---HHHHHHHHHHHhCCCEEEecCCC-C---HHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccC-cc
Confidence 4443 22223333456789999999994 4 4444444211 12333333333 2233444444332211110 01
Q ss_pred HHHHHHHHHHHHhC-CCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhc----------cc--
Q 000324 719 MNDLCYEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDM----------VK-- 785 (1665)
Q Consensus 719 ~~~~~~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~----------~~-- 785 (1665)
+...+++.+.+... +.|+|+|+|.|.-+-.+...=+..-..+...+..+..+.......+.++.. |.
T Consensus 405 lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 405 LSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSE 484 (730)
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCC
Confidence 44556666665554 789999999998776655544444444444444443333333333333221 11
Q ss_pred ------------cchhhhhcC-CcEEEecCCCCHH--HHHHHHHHHhCCCCCeEEeccccccccCCCceEEE--Eecccc
Q 000324 786 ------------SNDLKDLLP-YGFAIHHAGMTRG--DRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVI--IKGTQI 848 (1665)
Q Consensus 786 ------------~~~l~~ll~-~gv~~~Hagm~~~--dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vV--I~~t~~ 848 (1665)
.+.|+.+++ ..|...-+..+.. .-+..++.|.+|+.+|||.|..++.|.|+|+++.| ++.+..
T Consensus 485 ~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~ 564 (730)
T COG1198 485 HLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTG 564 (730)
T ss_pred eeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhh
Confidence 234555553 4455555554433 24567889999999999999999999999999875 444444
Q ss_pred cCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcHHHHHHhhcCCCccccchhHhhHHHHHHHHHhccccCh
Q 000324 849 YNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNA 928 (1665)
Q Consensus 849 yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~piES~l~~~l~d~lnaeI~~g~i~~~ 928 (1665)
...+..|-.+-..+-+.|-+|||||.+ ..|.++|-|...+-..+..++++
T Consensus 565 L~~~DfRA~Er~fqll~QvaGRAgR~~--~~G~VvIQT~~P~hp~i~~~~~~---------------------------- 614 (730)
T COG1198 565 LGSPDFRASERTFQLLMQVAGRAGRAG--KPGEVVIQTYNPDHPAIQALKRG---------------------------- 614 (730)
T ss_pred hcCCCcchHHHHHHHHHHHHhhhccCC--CCCeEEEEeCCCCcHHHHHHHhc----------------------------
Confidence 444444556778889999999999975 78999999988774444333222
Q ss_pred HHHHHHHHhhHHHHHhhcCCcccCCCc
Q 000324 929 KEACNWIGYTYLYIRMLRNPALYGLAP 955 (1665)
Q Consensus 929 ~~~~~wl~~t~~~~r~~~np~~y~~~~ 955 (1665)
|...|.....-.|+...-|.++-+..
T Consensus 615 -dy~~F~~~El~~Rk~~~~PPf~~l~~ 640 (730)
T COG1198 615 -DYEAFYEQELAERKELGLPPFSRLAA 640 (730)
T ss_pred -CHHHHHHHHHHHHHhcCCCChhhhee
Confidence 23334444445566777788876543
No 181
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.83 E-value=5.4e-19 Score=206.99 Aligned_cols=174 Identities=22% Similarity=0.251 Sum_probs=137.4
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcC
Q 000324 1337 QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (1665)
Q Consensus 1337 ~~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~ 1416 (1665)
.+.-.++.+|.......+.+ |.|++.|||-|||++|.+-+...+... ++ ++|+++||+-|+.|.+..+.+.++
T Consensus 11 p~~ie~R~YQ~~i~a~al~~--NtLvvlPTGLGKT~IA~~V~~~~l~~~--~~--kvlfLAPTKPLV~Qh~~~~~~v~~- 83 (542)
T COG1111 11 PNTIEPRLYQLNIAAKALFK--NTLVVLPTGLGKTFIAAMVIANRLRWF--GG--KVLFLAPTKPLVLQHAEFCRKVTG- 83 (542)
T ss_pred cccccHHHHHHHHHHHHhhc--CeEEEecCCccHHHHHHHHHHHHHHhc--CC--eEEEecCCchHHHHHHHHHHHHhC-
Confidence 34568899999999887764 799999999999999999999888872 33 899999999999999999985443
Q ss_pred CCCcEEEEEeCCCccch--hccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHH
Q 000324 1417 GLGMRVVELTGETAMDL--KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYI 1494 (1665)
Q Consensus 1417 ~~~i~v~~l~G~~~~~~--~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i 1494 (1665)
...-.++.++|....+. ..+..++|+|+||+.+.+-+.. ++..+.++.++|+||||+-.+.. .|-.+.....
T Consensus 84 ip~~~i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~--Grid~~dv~~lifDEAHRAvGny--AYv~Va~~y~-- 157 (542)
T COG1111 84 IPEDEIAALTGEVRPEEREELWAKKKVFVATPQVVENDLKA--GRIDLDDVSLLIFDEAHRAVGNY--AYVFVAKEYL-- 157 (542)
T ss_pred CChhheeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhc--CccChHHceEEEechhhhccCcc--hHHHHHHHHH--
Confidence 34457899999998873 4678899999999998665554 67889999999999999875443 4444443222
Q ss_pred HhhcCCCCeEEEEcccCCCh----HHHHHHhcccC
Q 000324 1495 ASQVENKIRIVALSTSLANA----KDLGEWIGATS 1525 (1665)
Q Consensus 1495 ~~~~~~~~riI~lSATl~n~----~dl~~wl~~~~ 1525 (1665)
....+++++|||||+.+. .++.+-||...
T Consensus 158 --~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~ 190 (542)
T COG1111 158 --RSAKNPLILGLTASPGSDLEKIQEVVENLGIEK 190 (542)
T ss_pred --HhccCceEEEEecCCCCCHHHHHHHHHhCCcce
Confidence 235688999999999873 35667777654
No 182
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.82 E-value=8.7e-20 Score=236.69 Aligned_cols=267 Identities=22% Similarity=0.329 Sum_probs=199.9
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000324 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (1665)
Q Consensus 1338 ~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~ 1417 (1665)
|...|+|-|.+|+..++.|.+ ++|.+|||+||++||++|++ -..+ -.|||.|..+|+..+...+. .
T Consensus 261 g~~~FR~~Q~eaI~~~l~Gkd-~fvlmpTG~GKSLCYQlPA~------l~~g--itvVISPL~SLm~DQv~~L~-----~ 326 (941)
T KOG0351|consen 261 GHKGFRPNQLEAINATLSGKD-CFVLMPTGGGKSLCYQLPAL------LLGG--VTVVISPLISLMQDQVTHLS-----K 326 (941)
T ss_pred ccccCChhHHHHHHHHHcCCc-eEEEeecCCceeeEeecccc------ccCC--ceEEeccHHHHHHHHHHhhh-----h
Confidence 689999999999999999888 99999999999999999987 1233 79999999999999887663 2
Q ss_pred CCcEEEEEeCCCccc-----hhccC----CCcEEEEChhhHHHHHHhhhccccCCC---ccEEEeecccccCCCCchhHH
Q 000324 1418 LGMRVVELTGETAMD-----LKLLE----KGQIIISTPEKWDALSRRWKQRKYVQQ---VSLFIIDELHLIGGQGGPVLE 1485 (1665)
Q Consensus 1418 ~~i~v~~l~G~~~~~-----~~~l~----~~~IIV~TPe~l~~l~r~~~~~~~l~~---v~llViDEaH~l~~~~g~~~e 1485 (1665)
.++....+.|+.... .+.+. ..+|+..|||++...-+.......+.. +.++||||||++. .+|..++
T Consensus 327 ~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVS-qWgHdFR 405 (941)
T KOG0351|consen 327 KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVS-QWGHDFR 405 (941)
T ss_pred cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhh-hhccccc
Confidence 368888999987764 22233 338999999998653332222233444 9999999999996 4567788
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcccCCC--hHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcChhH
Q 000324 1486 VIVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPT 1563 (1665)
Q Consensus 1486 ~~~srl~~i~~~~~~~~riI~lSATl~n--~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~ 1563 (1665)
.-..++..+....+. +.+|+||||... ..|+..-|+.....++. .+..+..+...+..-.... .....
T Consensus 406 p~Yk~l~~l~~~~~~-vP~iALTATAT~~v~~DIi~~L~l~~~~~~~--~sfnR~NL~yeV~~k~~~~-------~~~~~ 475 (941)
T KOG0351|consen 406 PSYKRLGLLRIRFPG-VPFIALTATATERVREDVIRSLGLRNPELFK--SSFNRPNLKYEVSPKTDKD-------ALLDI 475 (941)
T ss_pred HHHHHHHHHHhhCCC-CCeEEeehhccHHHHHHHHHHhCCCCcceec--ccCCCCCceEEEEeccCcc-------chHHH
Confidence 888888777766554 899999999855 56999999988766544 3333334444443322100 00111
Q ss_pred HHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCC
Q 000324 1564 FTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGL 1643 (1665)
Q Consensus 1564 ~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m 1643 (1665)
...+ ....+..++||||.+|+.|+.++..|. ..+...++||+||
T Consensus 476 ~~~~-~~~~~~~s~IIYC~sr~~ce~vs~~L~-----------------------------------~~~~~a~~YHAGl 519 (941)
T KOG0351|consen 476 LEES-KLRHPDQSGIIYCLSRKECEQVSAVLR-----------------------------------SLGKSAAFYHAGL 519 (941)
T ss_pred HHHh-hhcCCCCCeEEEeCCcchHHHHHHHHH-----------------------------------HhchhhHhhhcCC
Confidence 1122 233677889999999999999998883 2446688999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEC
Q 000324 1644 NKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1644 ~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
++.+|..|.+.|..|+++|+|+
T Consensus 520 ~~~~R~~Vq~~w~~~~~~VivA 541 (941)
T KOG0351|consen 520 PPKERETVQKAWMSDKIRVIVA 541 (941)
T ss_pred CHHHHHHHHHHHhcCCCeEEEE
Confidence 9999999999999999999874
No 183
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.82 E-value=8.1e-19 Score=224.08 Aligned_cols=267 Identities=16% Similarity=0.119 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHcCCCcEEEECCCCChHHHH---------HHHHHHHHHHhhc-CCCCeEEEEEcccHHHHHHHHHHHHHH
Q 000324 1344 PIQTQVFTVLYNTDDNVLVAAPTGSGKTIC---------SEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYRDWEIK 1413 (1665)
Q Consensus 1344 ~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~---------a~l~il~~l~~~~-~~~~~r~l~I~PtreLa~Q~~~~~~~~ 1413 (1665)
.+|.++++.+.++++ ++++|+||||||.+ |++|.+..+.... .....++++++||+|||.|+..++.+.
T Consensus 167 ~iQ~qil~~i~~gkd-vIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~ 245 (675)
T PHA02653 167 DVQLKIFEAWISRKP-VVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHHHHhCCC-EEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHH
Confidence 589999999998776 99999999999997 4445555443211 112238999999999999999998855
Q ss_pred hcC--CCCcEEEEEeCCCccc--hhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHH
Q 000324 1414 FGQ--GLGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVS 1489 (1665)
Q Consensus 1414 ~~~--~~~i~v~~l~G~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~s 1489 (1665)
.+. ..+..+....|+.+.. ....+..+|+|+|++.. ...+.++++||+||||.....+ .. ++.
T Consensus 246 vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~---------l~~L~~v~~VVIDEaHEr~~~~-Dl---lL~ 312 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLT---------LNKLFDYGTVIIDEVHEHDQIG-DI---IIA 312 (675)
T ss_pred hCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCccc---------ccccccCCEEEccccccCccch-hH---HHH
Confidence 542 2467788899988643 22334669999997531 1247889999999999886543 22 222
Q ss_pred HHHHHHhhcCCCCeEEEEcccCCC-hHHHHHHhcccCCcEEecCCCCCccceEEEEeecccc-hhhH-HHHhcChhHHHH
Q 000324 1490 RMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIT-NFEA-RMQAMTKPTFTA 1566 (1665)
Q Consensus 1490 rl~~i~~~~~~~~riI~lSATl~n-~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~-~~~~-~~~~~~k~~~~~ 1566 (1665)
-++.+ .+...|+++||||++. ...+..+++.. ..+.... ....|++......... .... ............
T Consensus 313 llk~~---~~~~rq~ILmSATl~~dv~~l~~~~~~p--~~I~I~g-rt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~ 386 (675)
T PHA02653 313 VARKH---IDKIRSLFLMTATLEDDRDRIKEFFPNP--AFVHIPG-GTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTA 386 (675)
T ss_pred HHHHh---hhhcCEEEEEccCCcHhHHHHHHHhcCC--cEEEeCC-CcCCCeEEEEeecCcccccchhhhHHHHHHHHHH
Confidence 22222 1223589999999974 55677777632 2333322 1123444333211100 0000 000111112222
Q ss_pred HHHHh-cCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCH
Q 000324 1567 IVQHA-KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNK 1645 (1665)
Q Consensus 1567 i~~~l-~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~ 1645 (1665)
+.... ...+++||||+++.+|+.++..|.... -+..+..+||+|++
T Consensus 387 L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~---------------------------------~~~~v~~LHG~Lsq 433 (675)
T PHA02653 387 LKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRL---------------------------------PIYDFYIIHGKVPN 433 (675)
T ss_pred HHHhhcccCCcEEEEECcHHHHHHHHHHHHhhc---------------------------------CCceEEeccCCcCH
Confidence 32221 134679999999999999997773210 13558899999998
Q ss_pred HHHHHHHHHH-hcCCceEEEC
Q 000324 1646 TDQEVVSALF-EAGKIKICYR 1665 (1665)
Q Consensus 1646 ~dR~~v~~~F-~~G~i~VLVC 1665 (1665)
. ..+++.| ++|+.+||||
T Consensus 434 ~--eq~l~~ff~~gk~kILVA 452 (675)
T PHA02653 434 I--DEILEKVYSSKNPSIIIS 452 (675)
T ss_pred H--HHHHHHHhccCceeEEec
Confidence 5 4566676 7999999997
No 184
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.82 E-value=9.9e-20 Score=201.96 Aligned_cols=285 Identities=19% Similarity=0.303 Sum_probs=207.2
Q ss_pred CCCCCcccccchhHHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEc
Q 000324 1318 DLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397 (1665)
Q Consensus 1318 ~l~p~~~~~L~~~~~~~l~~~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~ 1397 (1665)
+-..+|++.-...++...|. ...|+|.|..++++.+.+.+ +++..|||.||++||.||.| ..++ -+|+|+
T Consensus 72 dkd~fpws~e~~~ilk~~f~-lekfrplq~~ain~~ma~ed-~~lil~tgggkslcyqlpal------~adg--~alvi~ 141 (695)
T KOG0353|consen 72 DKDDFPWSDEAKDILKEQFH-LEKFRPLQLAAINATMAGED-AFLILPTGGGKSLCYQLPAL------CADG--FALVIC 141 (695)
T ss_pred ccCCCCCchHHHHHHHHHhh-HHhcChhHHHHhhhhhccCc-eEEEEeCCCccchhhhhhHH------hcCC--ceEeec
Confidence 44567777777777888776 88999999999999999887 99999999999999999998 3455 899999
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccch-h-----cc---CCCcEEEEChhhHHH---HHHhhhccccCCCc
Q 000324 1398 PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL-K-----LL---EKGQIIISTPEKWDA---LSRRWKQRKYVQQV 1465 (1665)
Q Consensus 1398 PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~-~-----~l---~~~~IIV~TPe~l~~---l~r~~~~~~~l~~v 1465 (1665)
|...|++++.-.++ .+ |+....+....+... + +. ..-.+|..||+++.. ++.+.........+
T Consensus 142 plislmedqil~lk-ql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~ 216 (695)
T KOG0353|consen 142 PLISLMEDQILQLK-QL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFF 216 (695)
T ss_pred hhHHHHHHHHHHHH-Hh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhccee
Confidence 99999999888777 33 566666666655431 1 11 123799999999854 44444444556789
Q ss_pred cEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCC--hHHHHHHhcccCCcEEecCCCCCccceEEE
Q 000324 1466 SLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHGLFNFPPGVRPVPLEIH 1543 (1665)
Q Consensus 1466 ~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n--~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~ 1543 (1665)
.++-+||+|+... +|..++.-.+.+.-+.+++ ++..++||+||-.| -.|....++... .|.|........+...
T Consensus 217 ~~iaidevhccsq-wghdfr~dy~~l~ilkrqf-~~~~iigltatatn~vl~d~k~il~ie~--~~tf~a~fnr~nl~ye 292 (695)
T KOG0353|consen 217 KLIAIDEVHCCSQ-WGHDFRPDYKALGILKRQF-KGAPIIGLTATATNHVLDDAKDILCIEA--AFTFRAGFNRPNLKYE 292 (695)
T ss_pred EEEeecceeehhh-hCcccCcchHHHHHHHHhC-CCCceeeeehhhhcchhhHHHHHHhHHh--hheeecccCCCCceeE
Confidence 9999999999864 4455555555555555565 47889999999877 345555665543 3555555544455555
Q ss_pred EeecccchhhHHHHhcChhHHHHHHHHh---cCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhH
Q 000324 1544 IQGVDITNFEARMQAMTKPTFTAIVQHA---KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFI 1620 (1665)
Q Consensus 1544 i~~~~~~~~~~~~~~~~k~~~~~i~~~l---~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~ 1620 (1665)
+..-+... ......|...+ -.+...||||-|++.|+.++..|
T Consensus 293 v~qkp~n~---------dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~al-------------------------- 337 (695)
T KOG0353|consen 293 VRQKPGNE---------DDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKAL-------------------------- 337 (695)
T ss_pred eeeCCCCh---------HHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHH--------------------------
Confidence 54333221 11122222222 34567999999999999999888
Q ss_pred hhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1621 DNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1621 ~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
...+...+.||+.|.+.||.-+.+.|..|+|+|+|+
T Consensus 338 ---------kn~gi~a~~yha~lep~dks~~hq~w~a~eiqviva 373 (695)
T KOG0353|consen 338 ---------KNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVA 373 (695)
T ss_pred ---------HhcCccccccccccCccccccccccccccceEEEEE
Confidence 234555789999999999999999999999999984
No 185
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.82 E-value=1.1e-19 Score=197.63 Aligned_cols=158 Identities=30% Similarity=0.458 Sum_probs=127.0
Q ss_pred CHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhcc
Q 000324 497 NRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQM 576 (1665)
Q Consensus 497 ~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~ 576 (1665)
||+|.++++.++ ++++++++||||+|||+++++++++.+... . ..+++|++|+++|+.|+++++...+..
T Consensus 1 t~~Q~~~~~~i~-~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~--------~~~~lii~P~~~l~~q~~~~~~~~~~~ 70 (169)
T PF00270_consen 1 TPLQQEAIEAII-SGKNVLISAPTGSGKTLAYILPALNRLQEG-K--------DARVLIIVPTRALAEQQFERLRKFFSN 70 (169)
T ss_dssp -HHHHHHHHHHH-TTSEEEEECSTTSSHHHHHHHHHHHHHHTT-S--------SSEEEEEESSHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHH-cCCCEEEECCCCCccHHHHHHHHHhhhccC-C--------CceEEEEeecccccccccccccccccc
Confidence 689999999998 557799999999999999999999988764 1 238999999999999999999999887
Q ss_pred CCcEEEEEECCCcccHh---hh-ccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc-CCchHHHHHHHHHH
Q 000324 577 YDVKVRELSGDQTLTRQ---QI-EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTV 651 (1665)
Q Consensus 577 ~gi~V~~ltGd~~~~~~---~~-~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~r~~ 651 (1665)
.++++..++|+...... .+ .+++|+|+||+++..+.+.... .+.++++||+||+|.+.+ .++..+..++.++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~--~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~ 148 (169)
T PF00270_consen 71 TNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKI--NISRLSLIVIDEAHHLSDETFRAMLKSILRRLK 148 (169)
T ss_dssp TTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSS--TGTTESEEEEETHHHHHHTTHHHHHHHHHHHSH
T ss_pred cccccccccccccccccccccccccccccccCcchhhcccccccc--ccccceeeccCcccccccccHHHHHHHHHHHhc
Confidence 78899999998875422 22 4699999999998666665332 455599999999999987 45665665555432
Q ss_pred HHHhhccCCeeEEEEcccCC
Q 000324 652 RQIETTKEHIRLVGLSATLP 671 (1665)
Q Consensus 652 ~~~~~~~~~~riV~lSATl~ 671 (1665)
. ..+.++|++|||++
T Consensus 149 ----~-~~~~~~i~~SAT~~ 163 (169)
T PF00270_consen 149 ----R-FKNIQIILLSATLP 163 (169)
T ss_dssp ----T-TTTSEEEEEESSST
T ss_pred ----C-CCCCcEEEEeeCCC
Confidence 2 33689999999997
No 186
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.81 E-value=3.2e-19 Score=194.10 Aligned_cols=158 Identities=30% Similarity=0.521 Sum_probs=124.5
Q ss_pred CHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEE
Q 000324 1343 NPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRV 1422 (1665)
Q Consensus 1343 ~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v 1422 (1665)
||+|.++++.++. +.++++.||||+|||+++.++++..+.+. ... +++|++|+++|+.|+++.+.+.+. ..+.++
T Consensus 1 t~~Q~~~~~~i~~-~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~--~~lii~P~~~l~~q~~~~~~~~~~-~~~~~~ 75 (169)
T PF00270_consen 1 TPLQQEAIEAIIS-GKNVLISAPTGSGKTLAYILPALNRLQEG-KDA--RVLIIVPTRALAEQQFERLRKFFS-NTNVRV 75 (169)
T ss_dssp -HHHHHHHHHHHT-TSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSS--EEEEEESSHHHHHHHHHHHHHHTT-TTTSSE
T ss_pred CHHHHHHHHHHHc-CCCEEEECCCCCccHHHHHHHHHhhhccC-CCc--eEEEEeeccccccccccccccccc-cccccc
Confidence 6999999999995 55699999999999999999999999884 334 999999999999999999995544 467889
Q ss_pred EEEeCCCccc---hhcc-CCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCC-chhHHHHHHHHHHHHhh
Q 000324 1423 VELTGETAMD---LKLL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQ 1497 (1665)
Q Consensus 1423 ~~l~G~~~~~---~~~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~-g~~~e~~~srl~~i~~~ 1497 (1665)
..++|+.+.+ ...+ .+++|+|+||+++..+.+.+.. .+.++++||+||+|.+.... +..+..++..+. .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~--~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~----~ 149 (169)
T PF00270_consen 76 VLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKI--NISRLSLIVIDEAHHLSDETFRAMLKSILRRLK----R 149 (169)
T ss_dssp EEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSS--TGTTESEEEEETHHHHHHTTHHHHHHHHHHHSH----T
T ss_pred ccccccccccccccccccccccccccCcchhhcccccccc--ccccceeeccCcccccccccHHHHHHHHHHHhc----C
Confidence 9999988744 2233 4689999999999998887332 55669999999999997642 333333333321 1
Q ss_pred cCCCCeEEEEcccCC
Q 000324 1498 VENKIRIVALSTSLA 1512 (1665)
Q Consensus 1498 ~~~~~riI~lSATl~ 1512 (1665)
..+.+++++|||++
T Consensus 150 -~~~~~~i~~SAT~~ 163 (169)
T PF00270_consen 150 -FKNIQIILLSATLP 163 (169)
T ss_dssp -TTTSEEEEEESSST
T ss_pred -CCCCcEEEEeeCCC
Confidence 23689999999997
No 187
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.81 E-value=2.9e-19 Score=202.03 Aligned_cols=269 Identities=19% Similarity=0.258 Sum_probs=185.1
Q ss_pred HHHHHhcCCCCC-CHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHH
Q 000324 1331 LYEALYQGFKHF-NPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (1665)
Q Consensus 1331 ~~~~l~~~f~~~-~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~ 1409 (1665)
.+..+|. +..| ++.|.+|+.++..++.+|.|++|||+||++||.||.|- .++ ..|++.|..+|+.++.+.
T Consensus 10 aLKK~FG-h~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~------~~g--ITIV~SPLiALIkDQiDH 80 (641)
T KOG0352|consen 10 ALKKLFG-HKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALV------HGG--ITIVISPLIALIKDQIDH 80 (641)
T ss_pred HHHHHhC-chhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHH------hCC--eEEEehHHHHHHHHHHHH
Confidence 4555554 5555 89999999999999988999999999999999999983 244 899999999999999998
Q ss_pred HHHHhcCCCCcEEEEEeCCCccchh--------c-cCCCcEEEEChhhHHH-----HHHhhhccccCCCccEEEeecccc
Q 000324 1410 WEIKFGQGLGMRVVELTGETAMDLK--------L-LEKGQIIISTPEKWDA-----LSRRWKQRKYVQQVSLFIIDELHL 1475 (1665)
Q Consensus 1410 ~~~~~~~~~~i~v~~l~G~~~~~~~--------~-l~~~~IIV~TPe~l~~-----l~r~~~~~~~l~~v~llViDEaH~ 1475 (1665)
+. ++ .+.+..+.+..+...+ . -..-.++..|||+... +++... .-..+.++|+||||+
T Consensus 81 L~-~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~---~r~~L~Y~vVDEAHC 152 (641)
T KOG0352|consen 81 LK-RL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLA---NRDVLRYIVVDEAHC 152 (641)
T ss_pred HH-hc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHh---hhceeeeEEechhhh
Confidence 88 33 3566667766655422 1 1123799999998632 333222 234589999999999
Q ss_pred cCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCC--hHHHHHHhcccCCc-EEecCCCCCccceEEEEeecccchh
Q 000324 1476 IGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHG-LFNFPPGVRPVPLEIHIQGVDITNF 1552 (1665)
Q Consensus 1476 l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n--~~dl~~wl~~~~~~-~~~f~~~~rpv~l~i~i~~~~~~~~ 1552 (1665)
+. .+|..++.-.-++..+.+.++ .+..++|+||-.. .+|+..-|...... +|. .|..|..- |-..++
T Consensus 153 VS-QWGHDFRPDYL~LG~LRS~~~-~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFk-TP~FR~NL-------FYD~~~ 222 (641)
T KOG0352|consen 153 VS-QWGHDFRPDYLTLGSLRSVCP-GVPWVALTATANAKVQEDIAFQLKLRNPVAIFK-TPTFRDNL-------FYDNHM 222 (641)
T ss_pred Hh-hhccccCcchhhhhhHHhhCC-CCceEEeecccChhHHHHHHHHHhhcCcHHhcc-Ccchhhhh-------hHHHHH
Confidence 96 445666665666667766654 7778999999655 35777777654322 222 23333211 100111
Q ss_pred hHHHHhcChhHHHHHH----HHhc-----------CCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccch
Q 000324 1553 EARMQAMTKPTFTAIV----QHAK-----------NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVE 1617 (1665)
Q Consensus 1553 ~~~~~~~~k~~~~~i~----~~l~-----------~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~ 1617 (1665)
.. .....+..+. ..+. ..+-.||||.||.+|+.+|..|
T Consensus 223 K~----~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l----------------------- 275 (641)
T KOG0352|consen 223 KS----FITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIML----------------------- 275 (641)
T ss_pred HH----HhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHh-----------------------
Confidence 11 1111111111 1111 1233899999999999999777
Q ss_pred hhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1618 PFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1618 ~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
...+.+...||+||...+|..|.+.|.+|++-|++.
T Consensus 276 ------------~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~A 311 (641)
T KOG0352|consen 276 ------------EIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAA 311 (641)
T ss_pred ------------hhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEE
Confidence 445667788999999999999999999999999873
No 188
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.81 E-value=9.2e-19 Score=229.87 Aligned_cols=328 Identities=19% Similarity=0.247 Sum_probs=201.9
Q ss_pred CCHHHHHHHHHHHcC--CC-cEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000324 496 LNRVQSRVYKSALSS--AD-NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1665)
Q Consensus 496 l~~iQ~~~i~~~l~~--~~-nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (1665)
..+.|..++..+... .. .+++.||||+|||.+++.+.+..+..... ...+++|+.|++++++++++++..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~-------~~~r~i~vlP~~t~ie~~~~r~~~ 268 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIK-------LKSRVIYVLPFRTIIEDMYRRAKE 268 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcccc-------ccceEEEEccHHHHHHHHHHHHHh
Confidence 478999999887654 23 68999999999999999998887765311 356999999999999999999998
Q ss_pred hhccCCcEEEEEECCCcccH----hh-------------hccccEEEeChhhHHH-HHhhcCCCc-cccceeEEEEeccc
Q 000324 573 RLQMYDVKVRELSGDQTLTR----QQ-------------IEETQIIVTTPEKWDI-ITRKSGDRT-YTQLVKLLIIDEIH 633 (1665)
Q Consensus 573 ~~~~~gi~V~~ltGd~~~~~----~~-------------~~~~~IiV~TPekld~-l~r~~~~~~-~l~~v~liIiDEaH 633 (1665)
.++..++....+.|.....- .. ..-..++++||-.+-. ......... ..=..+++|+||+|
T Consensus 269 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h 348 (733)
T COG1203 269 IFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVH 348 (733)
T ss_pred hhcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHH
Confidence 77654433332333222110 00 0123455566654322 111111110 00123789999999
Q ss_pred ccccCCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccC-ceEEecCCCccccceEEEEeeecCch
Q 000324 634 LLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEK-GLFYFDNSYRPVPLSQQYIGIQVKKP 712 (1665)
Q Consensus 634 ~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~-~~~~f~~~~rpv~l~~~~~~~~~~~~ 712 (1665)
.+.++. .+ .++..+.... ...+.++|++|||+|.. +.+.+...... ........ .++...... +..+..
T Consensus 349 ~~~~~~--~~-~~l~~~i~~l--~~~g~~ill~SATlP~~--~~~~l~~~~~~~~~~~~~~~--~~~~~~e~~-~~~~~~ 418 (733)
T COG1203 349 LYADET--ML-AALLALLEAL--AEAGVPVLLMSATLPPF--LKEKLKKALGKGREVVENAK--FCPKEDEPG-LKRKER 418 (733)
T ss_pred hhcccc--hH-HHHHHHHHHH--HhCCCCEEEEecCCCHH--HHHHHHHHHhcccceecccc--ccccccccc-cccccc
Confidence 998763 12 2222233322 23478899999999963 33333322111 11111111 111111000 000000
Q ss_pred hHHHHHHHHHHHHHHH-HHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhh
Q 000324 713 LQRFQLMNDLCYEKVV-AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (1665)
Q Consensus 713 ~~~~~~~~~~~~~~i~-~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 791 (1665)
..............+. ....+++++|-|||.+.|.+++..|+....
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~--------------------------------- 465 (733)
T COG1203 419 VDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGP--------------------------------- 465 (733)
T ss_pred hhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCC---------------------------------
Confidence 0000000000111122 223378999999999999999999987642
Q ss_pred hcCCcEEEecCCCCHHHHHHHHHHH----hCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhh
Q 000324 792 LLPYGFAIHHAGMTRGDRQLVEDLF----GDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQM 867 (1665)
Q Consensus 792 ll~~gv~~~Hagm~~~dR~~v~~~F----~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr 867 (1665)
.+..+||.+...||...++.+ +.+...|+|||.+.+.|||+. .+++|- ++. ++.+++||
T Consensus 466 ----~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mIT-----e~a-------PidSLIQR 528 (733)
T COG1203 466 ----KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLIT-----ELA-------PIDSLIQR 528 (733)
T ss_pred ----CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeee-----cCC-------CHHHHHHH
Confidence 267789999999999888864 457889999999999999996 666663 322 67889999
Q ss_pred hcccCCCCCCCceEEEEEeCCCc
Q 000324 868 LGRAGRPQYDSYGEGIIITGHSE 890 (1665)
Q Consensus 868 ~GRAGR~g~d~~G~~iil~~~~~ 890 (1665)
+||++|-|.+..|..++......
T Consensus 529 ~GRv~R~g~~~~~~~~v~~~~~~ 551 (733)
T COG1203 529 AGRVNRHGKKENGKIYVYNDEER 551 (733)
T ss_pred HHHHhhcccccCCceeEeecccC
Confidence 99999998766788777766543
No 189
>PRK13766 Hef nuclease; Provisional
Probab=99.80 E-value=9.1e-18 Score=225.52 Aligned_cols=160 Identities=24% Similarity=0.300 Sum_probs=123.2
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000324 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~ 1418 (1665)
.-.++++|.+++..++.+ |+++++|||+|||++|.+++...+.. +.+ ++|||+||++|+.|+...+++.++ ..
T Consensus 13 ~~~~r~yQ~~~~~~~l~~--n~lv~~ptG~GKT~~a~~~i~~~l~~--~~~--~vLvl~Pt~~L~~Q~~~~~~~~~~-~~ 85 (773)
T PRK13766 13 TIEARLYQQLLAATALKK--NTLVVLPTGLGKTAIALLVIAERLHK--KGG--KVLILAPTKPLVEQHAEFFRKFLN-IP 85 (773)
T ss_pred cCCccHHHHHHHHHHhcC--CeEEEcCCCccHHHHHHHHHHHHHHh--CCC--eEEEEeCcHHHHHHHHHHHHHHhC-CC
Confidence 457899999999988875 79999999999999999999988743 344 999999999999999999985443 33
Q ss_pred CcEEEEEeCCCccch--hccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHh
Q 000324 1419 GMRVVELTGETAMDL--KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIAS 1496 (1665)
Q Consensus 1419 ~i~v~~l~G~~~~~~--~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~ 1496 (1665)
+.++..++|+.+.+. ..+..++|+|+||+.+...+.. .+..+.+++++|+||||++.+..+ +..+.....
T Consensus 86 ~~~v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~--~~~~~~~~~liVvDEaH~~~~~~~--~~~i~~~~~---- 157 (773)
T PRK13766 86 EEKIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIA--GRISLEDVSLLIFDEAHRAVGNYA--YVYIAERYH---- 157 (773)
T ss_pred CceEEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHc--CCCChhhCcEEEEECCcccccccc--HHHHHHHHH----
Confidence 457888999877653 3566889999999998665433 345678899999999999865432 222332221
Q ss_pred hcCCCCeEEEEcccCCC
Q 000324 1497 QVENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1497 ~~~~~~riI~lSATl~n 1513 (1665)
......++++||||+..
T Consensus 158 ~~~~~~~il~lTaTP~~ 174 (773)
T PRK13766 158 EDAKNPLVLGLTASPGS 174 (773)
T ss_pred hcCCCCEEEEEEcCCCC
Confidence 22456789999999854
No 190
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=1.3e-17 Score=212.77 Aligned_cols=126 Identities=17% Similarity=0.130 Sum_probs=96.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHH-HHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTIL-QQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il-~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (1665)
.++++|--.--. ++.+ -|..++||+|||++|.+|++ +.+ . +..+-+++|+..||.|.++.+...
T Consensus 81 ~~~dvQlig~l~-L~~G--~Iaem~TGeGKTLva~lpa~l~aL-~-----------G~~V~IvTpn~yLA~rd~e~~~~l 145 (830)
T PRK12904 81 RHFDVQLIGGMV-LHEG--KIAEMKTGEGKTLVATLPAYLNAL-T-----------GKGVHVVTVNDYLAKRDAEWMGPL 145 (830)
T ss_pred CCCccHHHhhHH-hcCC--chhhhhcCCCcHHHHHHHHHHHHH-c-----------CCCEEEEecCHHHHHHHHHHHHHH
Confidence 456677655543 3332 48899999999999999996 444 2 123669999999999999999999
Q ss_pred hccCCcEEEEEECCCcccHh-hhccccEEEeChhhH--HHHHhhcC---CCccccceeEEEEeccccc
Q 000324 574 LQMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (1665)
Q Consensus 574 ~~~~gi~V~~ltGd~~~~~~-~~~~~~IiV~TPekl--d~l~r~~~---~~~~l~~v~liIiDEaH~l 635 (1665)
+..+|++|+.++|+.+...+ ..-.++|+++||..+ |.+..+.. .....+.+.++||||||.+
T Consensus 146 ~~~LGlsv~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsi 213 (830)
T PRK12904 146 YEFLGLSVGVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSI 213 (830)
T ss_pred HhhcCCeEEEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhh
Confidence 99999999999998776543 334689999999996 66644431 1124567899999999976
No 191
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.79 E-value=5.7e-18 Score=220.34 Aligned_cols=301 Identities=18% Similarity=0.183 Sum_probs=186.8
Q ss_pred CCCCHHHHHHHHHHHcC--CCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000324 1340 KHFNPIQTQVFTVLYNT--DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll~~--~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~ 1417 (1665)
..+++.|.++++.+.++ ..++++.||||||||.+|+.++...+.. +. ++||++|+++|+.|+++.+++.|+
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---g~--~vLvLvPt~~L~~Q~~~~l~~~fg-- 215 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---GK--QALVLVPEIALTPQMLARFRARFG-- 215 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc---CC--eEEEEeCcHHHHHHHHHHHHHHhC--
Confidence 36999999999999874 5669999999999999999888777654 33 899999999999999999997664
Q ss_pred CCcEEEEEeCCCccchh------cc-CCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCC--CchhHHHHH
Q 000324 1418 LGMRVVELTGETAMDLK------LL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ--GGPVLEVIV 1488 (1665)
Q Consensus 1418 ~~i~v~~l~G~~~~~~~------~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~--~g~~~e~~~ 1488 (1665)
.++..++|+.+...+ .. ..++|||+|++.+. ..+.++++|||||+|..+-. .++.|..
T Consensus 216 --~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~---------~p~~~l~liVvDEeh~~s~~~~~~p~y~~-- 282 (679)
T PRK05580 216 --APVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF---------LPFKNLGLIIVDEEHDSSYKQQEGPRYHA-- 282 (679)
T ss_pred --CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc---------ccccCCCEEEEECCCccccccCcCCCCcH--
Confidence 579999998776422 11 34699999997653 34678999999999977532 2443311
Q ss_pred HHHHHHHhhcCCCCeEEEEcccCCChHHHHHHhcccCCcEEecCCC--CCccceEEEEeecccchhhHHHHhcChhHHHH
Q 000324 1489 SRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPG--VRPVPLEIHIQGVDITNFEARMQAMTKPTFTA 1566 (1665)
Q Consensus 1489 srl~~i~~~~~~~~riI~lSATl~n~~dl~~wl~~~~~~~~~f~~~--~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~ 1566 (1665)
..+.... ....+.++|++|||++ .+.+..-. ......+..... .++.| .+.+..............+....+..
T Consensus 283 r~va~~r-a~~~~~~~il~SATps-~~s~~~~~-~g~~~~~~l~~r~~~~~~p-~v~~id~~~~~~~~~~~~ls~~l~~~ 358 (679)
T PRK05580 283 RDLAVVR-AKLENIPVVLGSATPS-LESLANAQ-QGRYRLLRLTKRAGGARLP-EVEIIDMRELLRGENGSFLSPPLLEA 358 (679)
T ss_pred HHHHHHH-hhccCCCEEEEcCCCC-HHHHHHHh-ccceeEEEeccccccCCCC-eEEEEechhhhhhcccCCCCHHHHHH
Confidence 1111111 2246789999999964 33222211 111222222211 11122 22222221100000011345667778
Q ss_pred HHHHhcCCCCEEEEeCchHHHHHHHHHHHH------------------------hcccCCCcccccccCCcccchh---h
Q 000324 1567 IVQHAKNEKPALVFVPSRKYVRLTAVDLMT------------------------YSSMDGDQKSAFLLWPAEEVEP---F 1619 (1665)
Q Consensus 1567 i~~~l~~~~~~IVFv~sr~~a~~la~~L~~------------------------~~~~~~~~~~~~l~~~~~~l~~---~ 1619 (1665)
+.+.+..++++|||+|+|..+-.+.-.-+. +|...........+|....+.. -
T Consensus 359 i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G 438 (679)
T PRK05580 359 IKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPG 438 (679)
T ss_pred HHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeecc
Confidence 888888888999999997654332222211 1111110000011222222222 1
Q ss_pred HhhhhHHHHHHHh-cccEEEEcCCCC--HHHHHHHHHHHhcCCceEEEC
Q 000324 1620 IDNIQEEMLKATL-RHGVGYLHEGLN--KTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1620 ~~~i~d~~L~~~l-~~gI~~~H~~m~--~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
.+++. +.|+..+ +..|..+|+++. ..+|..+++.|++|+++|||+
T Consensus 439 ~e~~~-e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVg 486 (679)
T PRK05580 439 TERLE-EELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIG 486 (679)
T ss_pred HHHHH-HHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEE
Confidence 22222 2334433 568999999987 467999999999999999986
No 192
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=7.6e-17 Score=204.77 Aligned_cols=132 Identities=17% Similarity=0.187 Sum_probs=107.8
Q ss_pred CCCCC---CHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHH
Q 000324 492 GMTQL---NRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (1665)
Q Consensus 492 g~~~l---~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~ 568 (1665)
||..+ +|+|.++++.++.+.+ +++.|+||+|||++|.+|++..+... ..+++|+|++.||.|.++
T Consensus 86 G~~~p~~~tp~qvQ~I~~i~l~~g-vIAeaqTGeGKTLAf~LP~l~~aL~g-----------~~v~IVTpTrELA~Qdae 153 (970)
T PRK12899 86 GYHQQWDMVPYDVQILGAIAMHKG-FITEMQTGEGKTLTAVMPLYLNALTG-----------KPVHLVTVNDYLAQRDCE 153 (970)
T ss_pred cccCCCCCChHHHHHhhhhhcCCC-eEEEeCCCCChHHHHHHHHHHHHhhc-----------CCeEEEeCCHHHHHHHHH
Confidence 56655 9999999999888755 99999999999999999999877542 137889999999999999
Q ss_pred HHHHhhccCCcEEEEEECCCcccHhh-hccccEEEeChhhH--HHHHhhcCCCc----cccceeEEEEeccccc
Q 000324 569 NLSNRLQMYDVKVRELSGDQTLTRQQ-IEETQIIVTTPEKW--DIITRKSGDRT----YTQLVKLLIIDEIHLL 635 (1665)
Q Consensus 569 ~~~~~~~~~gi~V~~ltGd~~~~~~~-~~~~~IiV~TPekl--d~l~r~~~~~~----~l~~v~liIiDEaH~l 635 (1665)
.+....+.+|++|+.++|+.....+. .-.++|+|+||+++ |.+.++..... ....+.++||||||.+
T Consensus 154 ~m~~L~k~lGLsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsm 227 (970)
T PRK12899 154 WVGSVLRWLGLTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSI 227 (970)
T ss_pred HHHHHHhhcCCeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhh
Confidence 99999888999999999998877653 33699999999997 66655432211 2245689999999976
No 193
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.77 E-value=4.9e-17 Score=206.46 Aligned_cols=128 Identities=16% Similarity=0.106 Sum_probs=96.7
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (1665)
.++++|--.--. ++. .-|..++||.|||++|.+|++...... ..+.+|+|+..||.+.++.+...+
T Consensus 82 ~~ydVQliGgl~-L~~--G~IaEm~TGEGKTL~a~lp~~l~al~g-----------~~VhIvT~ndyLA~RD~e~m~~l~ 147 (908)
T PRK13107 82 RHFDVQLLGGMV-LDS--NRIAEMRTGEGKTLTATLPAYLNALTG-----------KGVHVITVNDYLARRDAENNRPLF 147 (908)
T ss_pred CcCchHHhcchH-hcC--CccccccCCCCchHHHHHHHHHHHhcC-----------CCEEEEeCCHHHHHHHHHHHHHHH
Confidence 345555433322 333 258899999999999999998766542 249999999999999999999999
Q ss_pred ccCCcEEEEEECCCcccHhhh-ccccEEEeChhhH--HHHHhhcC---CCccccceeEEEEecccccc
Q 000324 575 QMYDVKVRELSGDQTLTRQQI-EETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLLH 636 (1665)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~~~~-~~~~IiV~TPekl--d~l~r~~~---~~~~l~~v~liIiDEaH~l~ 636 (1665)
..+|++|+.++|+.+...... -.++|+++||..+ |.|..+.. .......+.++||||||.++
T Consensus 148 ~~lGlsv~~i~~~~~~~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiL 215 (908)
T PRK13107 148 EFLGLTVGINVAGLGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSIL 215 (908)
T ss_pred HhcCCeEEEecCCCCHHHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhc
Confidence 999999999999887644333 3799999999995 76655422 12234678899999999764
No 194
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.77 E-value=2.6e-17 Score=209.05 Aligned_cols=260 Identities=14% Similarity=0.239 Sum_probs=164.0
Q ss_pred CCCCHHHHHHHHHHHcCC--CcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000324 1340 KHFNPIQTQVFTVLYNTD--DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll~~~--dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~ 1417 (1665)
..++|+|.+++..++..+ .+.++++|||+|||++++.++.. +. + ++|||||+.+|+.|+.+.+. +|...
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-l~-----k--~tLILvps~~Lv~QW~~ef~-~~~~l 324 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-VK-----K--SCLVLCTSAVSVEQWKQQFK-MWSTI 324 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-hC-----C--CEEEEeCcHHHHHHHHHHHH-HhcCC
Confidence 468999999999998533 46899999999999999766542 22 2 79999999999999999999 55444
Q ss_pred CCcEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhh------ccccCCCccEEEeecccccCCCCchhHHHHHHHH
Q 000324 1418 LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWK------QRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRM 1491 (1665)
Q Consensus 1418 ~~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~------~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl 1491 (1665)
....+..++|+.... .....+|+|+|...+....++.. ....-...++||+||||++.. +.+..++
T Consensus 325 ~~~~I~~~tg~~k~~--~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA---~~fr~il--- 396 (732)
T TIGR00603 325 DDSQICRFTSDAKER--FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA---AMFRRVL--- 396 (732)
T ss_pred CCceEEEEecCcccc--cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH---HHHHHHH---
Confidence 445677888864332 22346899999987653222110 011124678999999999953 2333333
Q ss_pred HHHHhhcCCCCeEEEEcccCCChH----HHHHHhcccCCcEEecCC-------CCCccc-eEEEEeecccch--------
Q 000324 1492 RYIASQVENKIRIVALSTSLANAK----DLGEWIGATSHGLFNFPP-------GVRPVP-LEIHIQGVDITN-------- 1551 (1665)
Q Consensus 1492 ~~i~~~~~~~~riI~lSATl~n~~----dl~~wl~~~~~~~~~f~~-------~~rpv~-l~i~i~~~~~~~-------- 1551 (1665)
..+. ....+|||||+...+ ++...+|. .+|.... ..-++. .++.+. .+...
T Consensus 397 ----~~l~-a~~RLGLTATP~ReD~~~~~L~~LiGP---~vye~~~~eLi~~G~LA~~~~~ev~v~-~t~~~~~~yl~~~ 467 (732)
T TIGR00603 397 ----TIVQ-AHCKLGLTATLVREDDKITDLNFLIGP---KLYEANWMELQKKGFIANVQCAEVWCP-MTPEFYREYLREN 467 (732)
T ss_pred ----HhcC-cCcEEEEeecCcccCCchhhhhhhcCC---eeeecCHHHHHhCCccccceEEEEEec-CCHHHHHHHHHhc
Confidence 2222 334699999997533 22222332 2222210 111111 111111 11100
Q ss_pred --hhHHHHhcChhHHHH---HHH-HhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhH
Q 000324 1552 --FEARMQAMTKPTFTA---IVQ-HAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQE 1625 (1665)
Q Consensus 1552 --~~~~~~~~~k~~~~~---i~~-~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d 1625 (1665)
.......|+...+.. ++. +...+.++||||.+..++..++..|
T Consensus 468 ~~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L------------------------------- 516 (732)
T TIGR00603 468 SRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL------------------------------- 516 (732)
T ss_pred chhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc-------------------------------
Confidence 111223344333333 222 2236678999999999888887544
Q ss_pred HHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcC-CceEEEC
Q 000324 1626 EMLKATLRHGVGYLHEGLNKTDQEVVSALFEAG-KIKICYR 1665 (1665)
Q Consensus 1626 ~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G-~i~VLVC 1665 (1665)
++.++||++++.+|..+++.|++| .+++|||
T Consensus 517 ---------~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~ 548 (732)
T TIGR00603 517 ---------GKPFIYGPTSQQERMQILQNFQHNPKVNTIFL 548 (732)
T ss_pred ---------CCceEECCCCHHHHHHHHHHHHhCCCccEEEE
Confidence 356899999999999999999975 8899885
No 195
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.76 E-value=1.8e-17 Score=205.57 Aligned_cols=166 Identities=17% Similarity=0.269 Sum_probs=125.6
Q ss_pred HHhcCCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 000324 1334 ALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIK 1413 (1665)
Q Consensus 1334 ~l~~~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~ 1413 (1665)
..|...-.++.+|.+.....+ ..|+||++|||+|||.+|...++.++... +.+ ++|+++|++-|+.|+...+. .
T Consensus 55 ~~~p~~~~lR~YQ~eivq~AL--gkNtii~lPTG~GKTfIAa~Vm~nh~rw~-p~~--KiVF~aP~~pLv~QQ~a~~~-~ 128 (746)
T KOG0354|consen 55 WIYPTNLELRNYQEELVQPAL--GKNTIIALPTGSGKTFIAAVIMKNHFEWR-PKG--KVVFLAPTRPLVNQQIACFS-I 128 (746)
T ss_pred ccccCcccccHHHHHHhHHhh--cCCeEEEeecCCCccchHHHHHHHHHhcC-Ccc--eEEEeeCCchHHHHHHHHHh-h
Confidence 334456689999999999988 56799999999999999999999999984 445 99999999999999997666 5
Q ss_pred hcCCCCcEEEEEeCC-Cccc--hhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHH
Q 000324 1414 FGQGLGMRVVELTGE-TAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSR 1490 (1665)
Q Consensus 1414 ~~~~~~i~v~~l~G~-~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~sr 1490 (1665)
++.. ..+....|| .+.. .......+|+|+||+.+.+-+....... +..+.++||||||+-.. ...|-.++..
T Consensus 129 ~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~-ls~fs~iv~DE~Hra~k--n~~Y~~Vmr~ 203 (746)
T KOG0354|consen 129 YLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDE-LSDFSLIVFDECHRTSK--NHPYNNIMRE 203 (746)
T ss_pred ccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccc-cceEEEEEEcccccccc--cccHHHHHHH
Confidence 5432 455555555 3333 3456677999999999977666533222 78899999999998753 3456666654
Q ss_pred HHHHHhhcCCCCeEEEEcccCCC
Q 000324 1491 MRYIASQVENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1491 l~~i~~~~~~~~riI~lSATl~n 1513 (1665)
+..... ...|++|||||+.+
T Consensus 204 ~l~~k~---~~~qILgLTASpG~ 223 (746)
T KOG0354|consen 204 YLDLKN---QGNQILGLTASPGS 223 (746)
T ss_pred HHHhhh---ccccEEEEecCCCc
Confidence 444322 23499999999986
No 196
>PRK09694 helicase Cas3; Provisional
Probab=99.76 E-value=7.9e-17 Score=210.48 Aligned_cols=279 Identities=17% Similarity=0.189 Sum_probs=167.7
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCC-
Q 000324 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG- 1417 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~- 1417 (1665)
...|+|+|+.+-... .++..+++.||||+|||.++++++.+.... .... +++|..||+++++|+++++.+.+...
T Consensus 284 ~~~p~p~Q~~~~~~~-~~pgl~ileApTGsGKTEAAL~~A~~l~~~-~~~~--gi~~aLPT~Atan~m~~Rl~~~~~~~f 359 (878)
T PRK09694 284 GYQPRQLQTLVDALP-LQPGLTIIEAPTGSGKTEAALAYAWRLIDQ-GLAD--SIIFALPTQATANAMLSRLEALASKLF 359 (878)
T ss_pred CCCChHHHHHHHhhc-cCCCeEEEEeCCCCCHHHHHHHHHHHHHHh-CCCC--eEEEECcHHHHHHHHHHHHHHHHHHhc
Confidence 458999999885443 346679999999999999998877765544 2233 89999999999999999987433222
Q ss_pred CCcEEEEEeCCCccch-----------------------hccC-------CCcEEEEChhhHHHHHHhhhccccCCC---
Q 000324 1418 LGMRVVELTGETAMDL-----------------------KLLE-------KGQIIISTPEKWDALSRRWKQRKYVQQ--- 1464 (1665)
Q Consensus 1418 ~~i~v~~l~G~~~~~~-----------------------~~l~-------~~~IIV~TPe~l~~l~r~~~~~~~l~~--- 1464 (1665)
....+..++|....+. ..+. .++|+|||+.++..-.-..+ ...++.
T Consensus 360 ~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~k-h~~lR~~~L 438 (878)
T PRK09694 360 PSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVK-HRFIRGFGL 438 (878)
T ss_pred CCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccc-hHHHHHHhh
Confidence 1346777777653210 1111 26999999999864221111 112222
Q ss_pred -ccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCChH--HHHHHhcccCC----c---E------
Q 000324 1465 -VSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAK--DLGEWIGATSH----G---L------ 1528 (1665)
Q Consensus 1465 -v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~~--dl~~wl~~~~~----~---~------ 1528 (1665)
-++|||||+|.+-......++.++.. + . ....++|+||||+|... .+.+-++.... . .
T Consensus 439 a~svvIiDEVHAyD~ym~~lL~~~L~~---l-~--~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~ 512 (878)
T PRK09694 439 GRSVLIVDEVHAYDAYMYGLLEAVLKA---Q-A--QAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGV 512 (878)
T ss_pred ccCeEEEechhhCCHHHHHHHHHHHHH---H-H--hcCCcEEEEeCCCCHHHHHHHHHHhcccccccccccccccccccc
Confidence 35899999999843222233333322 2 2 23567999999998742 34433332100 0 0
Q ss_pred -----EecCC--CCCccceEEEEeecccchhhHHHHhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccC
Q 000324 1529 -----FNFPP--GVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMD 1601 (1665)
Q Consensus 1529 -----~~f~~--~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~ 1601 (1665)
+.... ...+.+..+.+........ ......+..+...+..+++++|||||++.|+.++..|.....
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~-----~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~-- 585 (878)
T PRK09694 513 NGAQRFDLSAHPEQLPARFTIQLEPICLADM-----LPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNN-- 585 (878)
T ss_pred ccceeeeccccccccCcceEEEEEeeccccc-----cCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCC--
Confidence 00000 0001111122111100000 001233445555556778999999999999999988842110
Q ss_pred CCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHH----HHHHHH-hcCC---ceEEEC
Q 000324 1602 GDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQE----VVSALF-EAGK---IKICYR 1665 (1665)
Q Consensus 1602 ~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~----~v~~~F-~~G~---i~VLVC 1665 (1665)
-...+..+||+++..+|. .+++.| ++|+ .+||||
T Consensus 586 ------------------------------~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVa 627 (878)
T PRK09694 586 ------------------------------TQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVA 627 (878)
T ss_pred ------------------------------CCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEE
Confidence 013489999999999994 567778 6776 478886
No 197
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.73 E-value=2.5e-16 Score=192.86 Aligned_cols=262 Identities=24% Similarity=0.346 Sum_probs=183.4
Q ss_pred CCCHHHHHHHHHHHcC-----CCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhc
Q 000324 1341 HFNPIQTQVFTVLYNT-----DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll~~-----~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~ 1415 (1665)
.+|.-|.+++..+... .-|-++++--|||||++|.++++..+.. +. ++...+||.-||+|.+..+.+.|.
T Consensus 262 ~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~---G~--Q~ALMAPTEILA~QH~~~~~~~l~ 336 (677)
T COG1200 262 KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA---GY--QAALMAPTEILAEQHYESLRKWLE 336 (677)
T ss_pred CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc---CC--eeEEeccHHHHHHHHHHHHHHHhh
Confidence 7999999999998751 2378999999999999999999988876 33 999999999999999999996665
Q ss_pred CCCCcEEEEEeCCCccchh-----ccCC--CcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHH
Q 000324 1416 QGLGMRVVELTGETAMDLK-----LLEK--GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488 (1665)
Q Consensus 1416 ~~~~i~v~~l~G~~~~~~~-----~l~~--~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~ 1488 (1665)
. .|++|..++|......+ .+.. .+|||+|= .+++ ....++++.++|+||-|+.+ +.
T Consensus 337 ~-~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTH----ALiQ---d~V~F~~LgLVIiDEQHRFG---------V~ 399 (677)
T COG1200 337 P-LGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTH----ALIQ---DKVEFHNLGLVIIDEQHRFG---------VH 399 (677)
T ss_pred h-cCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcc----hhhh---cceeecceeEEEEecccccc---------HH
Confidence 4 57999999998776522 2222 49999993 3333 35568899999999999997 55
Q ss_pred HHHHHHHhhcCC-CCeEEEEcccCCChHHHH-HHhcccCCc-EEecCCCCCccceEEEEeecccchhhHHHHhcChhHHH
Q 000324 1489 SRMRYIASQVEN-KIRIVALSTSLANAKDLG-EWIGATSHG-LFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFT 1565 (1665)
Q Consensus 1489 srl~~i~~~~~~-~~riI~lSATl~n~~dl~-~wl~~~~~~-~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~ 1565 (1665)
.|..-.. -.. .+.++.||||+-+ +.+| ..+|..... +-..+|...|+.-. .... . .....+.
T Consensus 400 QR~~L~~--KG~~~Ph~LvMTATPIP-RTLAlt~fgDldvS~IdElP~GRkpI~T~--~i~~--~--------~~~~v~e 464 (677)
T COG1200 400 QRLALRE--KGEQNPHVLVMTATPIP-RTLALTAFGDLDVSIIDELPPGRKPITTV--VIPH--E--------RRPEVYE 464 (677)
T ss_pred HHHHHHH--hCCCCCcEEEEeCCCch-HHHHHHHhccccchhhccCCCCCCceEEE--Eecc--c--------cHHHHHH
Confidence 5544332 234 5788999999644 2222 223333322 23334444443322 2111 1 1223455
Q ss_pred HHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHh-cccEEEEcCCCC
Q 000324 1566 AIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL-RHGVGYLHEGLN 1644 (1665)
Q Consensus 1566 ~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l-~~gI~~~H~~m~ 1644 (1665)
.+...+..++++.|.||-..+.+.+-..-. ++ .-..|+..+ +..|+.+||.|+
T Consensus 465 ~i~~ei~~GrQaY~VcPLIeESE~l~l~~a------------------~~--------~~~~L~~~~~~~~vgL~HGrm~ 518 (677)
T COG1200 465 RIREEIAKGRQAYVVCPLIEESEKLELQAA------------------EE--------LYEELKSFLPELKVGLVHGRMK 518 (677)
T ss_pred HHHHHHHcCCEEEEEeccccccccchhhhH------------------HH--------HHHHHHHHcccceeEEEecCCC
Confidence 667777889999999997776652220000 00 012333333 456999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEC
Q 000324 1645 KTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1645 ~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
..++..|++.|++|+++||||
T Consensus 519 ~~eKd~vM~~Fk~~e~~ILVa 539 (677)
T COG1200 519 PAEKDAVMEAFKEGEIDILVA 539 (677)
T ss_pred hHHHHHHHHHHHcCCCcEEEE
Confidence 999999999999999999997
No 198
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.73 E-value=2.7e-15 Score=201.56 Aligned_cols=203 Identities=17% Similarity=0.227 Sum_probs=120.2
Q ss_pred eeEEEEcccCC---ChHHHHHHHhccccCceEEe-cCCCccccceEEEEeeecC-----chhHHHHHHHHHHHHHHHHHh
Q 000324 661 IRLVGLSATLP---NYEDVALFLRVNLEKGLFYF-DNSYRPVPLSQQYIGIQVK-----KPLQRFQLMNDLCYEKVVAVA 731 (1665)
Q Consensus 661 ~riV~lSATl~---n~~dv~~~l~~~~~~~~~~f-~~~~rpv~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~ 731 (1665)
..+|++||||. +.+-+.+.++... .....+ .+.|....-..-++.-... +.......+...+.+.+ ..
T Consensus 596 ~~~il~SATL~~~~~~~~~~~~lGl~~-~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~-~~- 672 (850)
T TIGR01407 596 KSLIFTSATLKFSHSFESFPQLLGLTD-VHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEIT-AI- 672 (850)
T ss_pred CeEEEEecccccCCChHHHHHhcCCCc-cccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHH-Hh-
Confidence 36889999997 5666777777642 111122 2222211111112111111 11122223333333322 22
Q ss_pred CCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHH
Q 000324 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (1665)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~ 811 (1665)
.++++|||++|.+....++..|...... .++.++..+.. ..|..
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~-----------------------------------~~~~~l~q~~~-~~r~~ 716 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEF-----------------------------------EGYEVLAQGIN-GSRAK 716 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccc-----------------------------------cCceEEecCCC-ccHHH
Confidence 3578999999999999999888653211 11222233333 57889
Q ss_pred HHHHHhCCCCCeEEeccccccccCCCceE--EEEecccccCCCCC----------------CcccC----CHHHHHhhhc
Q 000324 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHT--VIIKGTQIYNPEKG----------------AWTEL----SPLDIMQMLG 869 (1665)
Q Consensus 812 v~~~F~~g~i~VLVaT~tla~GVdlP~v~--vVI~~t~~yd~~~g----------------~~~~~----s~~~~~Qr~G 869 (1665)
+++.|++|...||+||+.+++|||+|+.. .||--..||.++.. .|.++ ....+.|.+|
T Consensus 717 ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~G 796 (850)
T TIGR01407 717 IKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALG 796 (850)
T ss_pred HHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhc
Confidence 99999999999999999999999999854 34444556665431 22333 3467889999
Q ss_pred ccCCCCCCCceEEEEEeCCCcHHHHHHhhcCCCc
Q 000324 870 RAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLP 903 (1665)
Q Consensus 870 RAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~p 903 (1665)
|.-|... ..|..+++-..-....|-+.+-+.+|
T Consensus 797 RlIRs~~-D~G~v~ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 797 RLIRREN-DRGSIVILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred cccccCC-ceEEEEEEccccccchHHHHHHHhCC
Confidence 9999764 46876666555444566555555555
No 199
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.71 E-value=7.6e-16 Score=191.54 Aligned_cols=261 Identities=15% Similarity=0.174 Sum_probs=163.0
Q ss_pred CCCCCHHHHHHHHHHHcC---CCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhc
Q 000324 1339 FKHFNPIQTQVFTVLYNT---DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~~---~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~ 1415 (1665)
...++++|.+|+..+.+. ....++++|||+|||+++..++-. +.. +++||||+++|+.|+.+.+.+.+.
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~-~~~-------~~Lvlv~~~~L~~Qw~~~~~~~~~ 105 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAE-LKR-------STLVLVPTKELLDQWAEALKKFLL 105 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHH-hcC-------CEEEEECcHHHHHHHHHHHHHhcC
Confidence 457999999999999984 556999999999999999776642 222 599999999999999987775544
Q ss_pred CCCCcEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHH
Q 000324 1416 QGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIA 1495 (1665)
Q Consensus 1416 ~~~~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~ 1495 (1665)
. +..++.+.|+...- ....|+|+|-..+...- .-........++||+||||++.... +..+...+
T Consensus 106 ~--~~~~g~~~~~~~~~----~~~~i~vat~qtl~~~~--~l~~~~~~~~~liI~DE~Hh~~a~~---~~~~~~~~---- 170 (442)
T COG1061 106 L--NDEIGIYGGGEKEL----EPAKVTVATVQTLARRQ--LLDEFLGNEFGLIIFDEVHHLPAPS---YRRILELL---- 170 (442)
T ss_pred C--ccccceecCceecc----CCCcEEEEEhHHHhhhh--hhhhhcccccCEEEEEccccCCcHH---HHHHHHhh----
Confidence 2 13456666654322 11579999977765421 0011122369999999999997554 22222211
Q ss_pred hhcCCCCeEEEEcccCCChH-----HHHHHhcccCCcEEecCC-------CCCccceEEEEeecccch------hh----
Q 000324 1496 SQVENKIRIVALSTSLANAK-----DLGEWIGATSHGLFNFPP-------GVRPVPLEIHIQGVDITN------FE---- 1553 (1665)
Q Consensus 1496 ~~~~~~~riI~lSATl~n~~-----dl~~wl~~~~~~~~~f~~-------~~rpv~l~i~i~~~~~~~------~~---- 1553 (1665)
.....++|||||++..+ ++...+| ..+|.+.. ...|..+........... ..
T Consensus 171 ---~~~~~~LGLTATp~R~D~~~~~~l~~~~g---~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~ 244 (442)
T COG1061 171 ---SAAYPRLGLTATPEREDGGRIGDLFDLIG---PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFR 244 (442)
T ss_pred ---hcccceeeeccCceeecCCchhHHHHhcC---CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhh
Confidence 21222899999987533 3334443 22333321 112211111111011000 00
Q ss_pred ---------------HHHHhcChhHHHHHHHHhc---CCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCccc
Q 000324 1554 ---------------ARMQAMTKPTFTAIVQHAK---NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEE 1615 (1665)
Q Consensus 1554 ---------------~~~~~~~k~~~~~i~~~l~---~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~ 1615 (1665)
.............+...+. .+.+++|||.+..++..++..+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~------------------- 305 (442)
T COG1061 245 ELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLA------------------- 305 (442)
T ss_pred hhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcC-------------------
Confidence 1111112222222222222 467899999999999999977721
Q ss_pred chhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEE
Q 000324 1616 VEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICY 1664 (1665)
Q Consensus 1616 l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLV 1664 (1665)
..++..+.+..+..+|..+++.|+.|.+++||
T Consensus 306 -----------------~~~~~~it~~t~~~eR~~il~~fr~g~~~~lv 337 (442)
T COG1061 306 -----------------PGIVEAITGETPKEEREAILERFRTGGIKVLV 337 (442)
T ss_pred -----------------CCceEEEECCCCHHHHHHHHHHHHcCCCCEEE
Confidence 11267999999999999999999999999987
No 200
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.70 E-value=2.7e-16 Score=197.70 Aligned_cols=277 Identities=18% Similarity=0.175 Sum_probs=167.1
Q ss_pred EEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchh------
Q 000324 1361 LVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK------ 1434 (1665)
Q Consensus 1361 lv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~------ 1434 (1665)
|+.||||||||.+|+.++...+.. ++ ++||++|+++|+.|+++++++.|+ .++..++|+.+...+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~---g~--~vLvlvP~i~L~~Q~~~~l~~~f~----~~v~vlhs~~~~~er~~~~~~ 71 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL---GK--SVLVLVPEIALTPQMIQRFKYRFG----SQVAVLHSGLSDSEKLQAWRK 71 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc---CC--eEEEEeCcHHHHHHHHHHHHHHhC----CcEEEEECCCCHHHHHHHHHH
Confidence 478999999999997776655544 33 899999999999999999997774 578889998765422
Q ss_pred cc-CCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCC--CchhHHHHHHHHHHHHhhcCCCCeEEEEcccC
Q 000324 1435 LL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ--GGPVLEVIVSRMRYIASQVENKIRIVALSTSL 1511 (1665)
Q Consensus 1435 ~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~--~g~~~e~~~srl~~i~~~~~~~~riI~lSATl 1511 (1665)
.. ..++|||+|+..+. ..+.++++|||||+|...-. .++.|.. ..+..+... ..+.++|++|||+
T Consensus 72 ~~~g~~~IVVGTrsalf---------~p~~~l~lIIVDEeh~~sykq~~~p~y~a--r~~a~~ra~-~~~~~vil~SATP 139 (505)
T TIGR00595 72 VKNGEILVVIGTRSALF---------LPFKNLGLIIVDEEHDSSYKQEEGPRYHA--RDVAVYRAK-KFNCPVVLGSATP 139 (505)
T ss_pred HHcCCCCEEECChHHHc---------CcccCCCEEEEECCCccccccccCCCCcH--HHHHHHHHH-hcCCCEEEEeCCC
Confidence 11 24689999987652 24678999999999987642 2444321 111112222 3478899999994
Q ss_pred CChHHHHHHhcccCCcEEecC--CCCCccceEEEEeecccchhhHHHHhcChhHHHHHHHHhcCCCCEEEEeCchHHHHH
Q 000324 1512 ANAKDLGEWIGATSHGLFNFP--PGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRL 1589 (1665)
Q Consensus 1512 ~n~~dl~~wl~~~~~~~~~f~--~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~ 1589 (1665)
..+.+...... ........ +..++.| .+.+....... ....+....+..+.+.+..++++|||+|+|.-+-.
T Consensus 140 -sles~~~~~~g-~~~~~~l~~r~~~~~~p-~v~vid~~~~~---~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~ 213 (505)
T TIGR00595 140 -SLESYHNAKQK-AYRLLVLTRRVSGRKPP-EVKLIDMRKEP---RQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKN 213 (505)
T ss_pred -CHHHHHHHhcC-CeEEeechhhhcCCCCC-eEEEEeccccc---ccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCe
Confidence 44443332211 11111111 1112222 22222211111 01234556778888888888999999999875322
Q ss_pred HH-----HH-------------------HHHhcccCCCcccccccCCcccchhh---HhhhhHHHHHHHh-cccEEEEcC
Q 000324 1590 TA-----VD-------------------LMTYSSMDGDQKSAFLLWPAEEVEPF---IDNIQEEMLKATL-RHGVGYLHE 1641 (1665)
Q Consensus 1590 la-----~~-------------------L~~~~~~~~~~~~~~l~~~~~~l~~~---~~~i~d~~L~~~l-~~gI~~~H~ 1641 (1665)
+. .. .+.+|...........+|....+... .+++. +.|+..+ +..|..+|+
T Consensus 214 ~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~-e~l~~~fp~~~v~~~d~ 292 (505)
T TIGR00595 214 LLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVE-EELAKLFPGARIARIDS 292 (505)
T ss_pred eEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHH-HHHHhhCCCCcEEEEec
Confidence 11 00 01112111111111223333333322 23332 3344444 578999999
Q ss_pred CCCHHHH--HHHHHHHhcCCceEEEC
Q 000324 1642 GLNKTDQ--EVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1642 ~m~~~dR--~~v~~~F~~G~i~VLVC 1665 (1665)
+++...+ ..+++.|++|+++|||+
T Consensus 293 d~~~~~~~~~~~l~~f~~g~~~ILVg 318 (505)
T TIGR00595 293 DTTSRKGAHEALLNQFANGKADILIG 318 (505)
T ss_pred ccccCccHHHHHHHHHhcCCCCEEEe
Confidence 9987766 89999999999999985
No 201
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=2e-15 Score=189.91 Aligned_cols=129 Identities=16% Similarity=0.118 Sum_probs=102.2
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000324 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~ 1419 (1665)
-.|+|+|..+++.++.|+ |+.|.||+|||++|.+|++.+... + +.++|++||++||.|.++.+. .+...+|
T Consensus 102 ~~p~~VQ~~~~~~ll~G~---Iae~~TGeGKTla~~lp~~~~al~---G--~~v~VvTptreLA~qdae~~~-~l~~~lG 172 (656)
T PRK12898 102 QRHFDVQLMGGLALLSGR---LAEMQTGEGKTLTATLPAGTAALA---G--LPVHVITVNDYLAERDAELMR-PLYEALG 172 (656)
T ss_pred CCCChHHHHHHHHHhCCC---eeeeeCCCCcHHHHHHHHHHHhhc---C--CeEEEEcCcHHHHHHHHHHHH-HHHhhcC
Confidence 478899999999999876 999999999999999999977654 2 289999999999999999888 5666789
Q ss_pred cEEEEEeCCCccch-hccCCCcEEEEChhhH-HHHHHhh-h----------------------ccccCCCccEEEeeccc
Q 000324 1420 MRVVELTGETAMDL-KLLEKGQIIISTPEKW-DALSRRW-K----------------------QRKYVQQVSLFIIDELH 1474 (1665)
Q Consensus 1420 i~v~~l~G~~~~~~-~~l~~~~IIV~TPe~l-~~l~r~~-~----------------------~~~~l~~v~llViDEaH 1474 (1665)
++|+.++|+.+... +....+||+++|...+ .+++|.. . .......+.+.||||+|
T Consensus 173 lsv~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvD 252 (656)
T PRK12898 173 LTVGCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEAD 252 (656)
T ss_pred CEEEEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeeccc
Confidence 99999999976653 3456789999999987 2233321 0 01123457899999999
Q ss_pred ccC
Q 000324 1475 LIG 1477 (1665)
Q Consensus 1475 ~l~ 1477 (1665)
.++
T Consensus 253 SiL 255 (656)
T PRK12898 253 SVL 255 (656)
T ss_pred cee
Confidence 653
No 202
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.68 E-value=2.8e-15 Score=190.49 Aligned_cols=132 Identities=17% Similarity=0.198 Sum_probs=99.8
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000324 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~ 1418 (1665)
...++|+|.|++..+..... .++.++||+|||++|.+|++.+... +. .++|++|+++||.|..+.+. .+...+
T Consensus 66 ~lglrpydVQlig~l~l~~G-~Iaem~TGeGKTLta~Lpa~l~aL~---g~--~V~VVTpn~yLA~Rdae~m~-~l~~~L 138 (762)
T TIGR03714 66 VLGMFPYDVQVLGAIVLHQG-NIAEMKTGEGKTLTATMPLYLNALT---GK--GAMLVTTNDYLAKRDAEEMG-PVYEWL 138 (762)
T ss_pred hcCCCccHHHHHHHHHhcCC-ceeEecCCcchHHHHHHHHHHHhhc---CC--ceEEeCCCHHHHHHHHHHHH-HHHhhc
Confidence 34568888888887765455 7999999999999999998766554 22 69999999999999998777 666678
Q ss_pred CcEEEEEeCCC-----ccc-hhccCCCcEEEEChhhH-HHHHHhh----hccccCCCccEEEeecccccC
Q 000324 1419 GMRVVELTGET-----AMD-LKLLEKGQIIISTPEKW-DALSRRW----KQRKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1419 ~i~v~~l~G~~-----~~~-~~~l~~~~IIV~TPe~l-~~l~r~~----~~~~~l~~v~llViDEaH~l~ 1477 (1665)
|++|+...++. ... .+....++|+++||+++ .++++.. .....+..+.++|+||||.++
T Consensus 139 GLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsIL 208 (762)
T TIGR03714 139 GLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVL 208 (762)
T ss_pred CCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHh
Confidence 99998877752 111 23446789999999999 3444321 122346789999999999874
No 203
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.67 E-value=2.5e-15 Score=192.98 Aligned_cols=128 Identities=22% Similarity=0.183 Sum_probs=101.9
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000324 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i 1420 (1665)
.|+++|..+...+..|+ ++.|.||+|||++|.+|++..... +. .+.+++||++||.|.+..+. .+...+|+
T Consensus 78 ~p~~vQl~~~~~l~~G~---Iaem~TGeGKTL~a~lp~~l~al~---G~--~v~VvTpt~~LA~qd~e~~~-~l~~~lGl 148 (790)
T PRK09200 78 RPYDVQLIGALVLHEGN---IAEMQTGEGKTLTATMPLYLNALE---GK--GVHLITVNDYLAKRDAEEMG-QVYEFLGL 148 (790)
T ss_pred CCchHHHHhHHHHcCCc---eeeecCCCcchHHHHHHHHHHHHc---CC--CeEEEeCCHHHHHHHHHHHH-HHHhhcCC
Confidence 78889988888776543 999999999999999999865554 22 79999999999999999888 66667899
Q ss_pred EEEEEeCCCc-cc-hhccCCCcEEEEChhhH-HHHHHh-h---hccccCCCccEEEeecccccC
Q 000324 1421 RVVELTGETA-MD-LKLLEKGQIIISTPEKW-DALSRR-W---KQRKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1421 ~v~~l~G~~~-~~-~~~l~~~~IIV~TPe~l-~~l~r~-~---~~~~~l~~v~llViDEaH~l~ 1477 (1665)
+++.+.|+.+ .. .+....++|+++||+++ .++++. . .....+..+.++|+||||.++
T Consensus 149 ~v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 149 TVGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSIL 212 (790)
T ss_pred eEEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccce
Confidence 9999999987 43 44556789999999998 333332 1 122356789999999999764
No 204
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.65 E-value=2.8e-15 Score=184.69 Aligned_cols=169 Identities=23% Similarity=0.407 Sum_probs=133.9
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000324 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i 1420 (1665)
.|..+|.+.+..+=. ++.++|+|||.+|||.+-..+|-.+++.. ..+ -+||++|+++|++|+......+|....-.
T Consensus 511 ~Pd~WQ~elLDsvDr-~eSavIVAPTSaGKTfisfY~iEKVLRes-D~~--VVIyvaPtKaLVnQvsa~VyaRF~~~t~~ 586 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDR-NESAVIVAPTSAGKTFISFYAIEKVLRES-DSD--VVIYVAPTKALVNQVSANVYARFDTKTFL 586 (1330)
T ss_pred CCcHHHHHHhhhhhc-ccceEEEeeccCCceeccHHHHHHHHhhc-CCC--EEEEecchHHHhhhhhHHHHHhhccCccc
Confidence 477899999888744 55699999999999999889998888883 444 79999999999999999999898544334
Q ss_pred EEEEEeCCCccchhc-cCCCcEEEEChhhHHHHHHh-hhccccCCCccEEEeecccccCCCC-chhHHHHHHHHHHHHhh
Q 000324 1421 RVVELTGETAMDLKL-LEKGQIIISTPEKWDALSRR-WKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQ 1497 (1665)
Q Consensus 1421 ~v~~l~G~~~~~~~~-l~~~~IIV~TPe~l~~l~r~-~~~~~~l~~v~llViDEaH~l~~~~-g~~~e~~~srl~~i~~~ 1497 (1665)
+...+.|..+.+.++ .-+|+|+|+-|+.+..++-. .....+..+++++|+||+|.++... |..+|.++.-
T Consensus 587 rg~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~l------- 659 (1330)
T KOG0949|consen 587 RGVSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLL------- 659 (1330)
T ss_pred cchhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHh-------
Confidence 555666766665442 23789999999999887654 2234578899999999999999844 5555554421
Q ss_pred cCCCCeEEEEcccCCChHHHHHHhc
Q 000324 1498 VENKIRIVALSTSLANAKDLGEWIG 1522 (1665)
Q Consensus 1498 ~~~~~riI~lSATl~n~~dl~~wl~ 1522 (1665)
.+++++++|||+.|+..+-.|+.
T Consensus 660 --i~CP~L~LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 660 --IPCPFLVLSATIGNPNLFQKWLN 682 (1330)
T ss_pred --cCCCeeEEecccCCHHHHHHHHH
Confidence 36789999999999999999997
No 205
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.65 E-value=1e-14 Score=194.03 Aligned_cols=251 Identities=17% Similarity=0.216 Sum_probs=151.9
Q ss_pred cCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEccc----HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCc
Q 000324 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPL----EALAKERYRDWEIKFGQGLGMRVVELTGETA 1430 (1665)
Q Consensus 1355 ~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~Pt----reLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~ 1430 (1665)
.+++.++|+|+||||||. .+|.+..-......+ ++++.-|. ++||.++...+...++...|.+| .
T Consensus 87 ~~~~VviI~GeTGSGKTT--qlPq~lle~g~g~~g--~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~v-------r 155 (1294)
T PRK11131 87 RDHQVVIVAGETGSGKTT--QLPKICLELGRGVKG--LIGHTQPRRLAARTVANRIAEELETELGGCVGYKV-------R 155 (1294)
T ss_pred HhCCeEEEECCCCCCHHH--HHHHHHHHcCCCCCC--ceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceee-------c
Confidence 346668899999999999 578443222111222 45556675 56666666666544444333222 1
Q ss_pred cchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeeccc-ccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcc
Q 000324 1431 MDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH-LIGGQGGPVLEVIVSRMRYIASQVENKIRIVALST 1509 (1665)
Q Consensus 1431 ~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH-~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSA 1509 (1665)
.+.+.-..++|+|+||+++...+.. ...+.++++||||||| +..+.. - ++..++.+... .++.|+|++||
T Consensus 156 f~~~~s~~t~I~v~TpG~LL~~l~~---d~~Ls~~~~IIIDEAHERsLn~D-f----LLg~Lk~lL~~-rpdlKvILmSA 226 (1294)
T PRK11131 156 FNDQVSDNTMVKLMTDGILLAEIQQ---DRLLMQYDTIIIDEAHERSLNID-F----ILGYLKELLPR-RPDLKVIITSA 226 (1294)
T ss_pred CccccCCCCCEEEEChHHHHHHHhc---CCccccCcEEEecCccccccccc-h----HHHHHHHhhhc-CCCceEEEeeC
Confidence 1222235679999999999887764 3468999999999999 454432 1 22334444332 24689999999
Q ss_pred cCCChHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcChhHHHHHHHH-hcCCCCEEEEeCchHHHH
Q 000324 1510 SLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQH-AKNEKPALVFVPSRKYVR 1588 (1665)
Q Consensus 1510 Tl~n~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~-l~~~~~~IVFv~sr~~a~ 1588 (1665)
|++ ...++++++..+ ++.... +..|++++............ ..........+... ....+.+||||+++..++
T Consensus 227 Tid-~e~fs~~F~~ap--vI~V~G--r~~pVei~y~p~~~~~~~~~-~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe 300 (1294)
T PRK11131 227 TID-PERFSRHFNNAP--IIEVSG--RTYPVEVRYRPIVEEADDTE-RDQLQAIFDAVDELGREGPGDILIFMSGEREIR 300 (1294)
T ss_pred CCC-HHHHHHHcCCCC--EEEEcC--ccccceEEEeecccccchhh-HHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHH
Confidence 994 567888876432 344443 33344444432211110000 00001111112111 134567999999999999
Q ss_pred HHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1589 LTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1589 ~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
.++..|.... .-...|..+||+|++.+|..+++. .|..+||||
T Consensus 301 ~lae~L~~~~--------------------------------~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVA 343 (1294)
T PRK11131 301 DTADALNKLN--------------------------------LRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLA 343 (1294)
T ss_pred HHHHHHHhcC--------------------------------CCcceEeecccCCCHHHHHHHhcc--cCCeeEEEe
Confidence 9998884210 001237789999999999999886 588999987
No 206
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.65 E-value=4.4e-16 Score=176.24 Aligned_cols=234 Identities=18% Similarity=0.240 Sum_probs=144.5
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHhcCC---CCcEEEEEeCCCccc---hhccCCCcEEEEChhhHHHHHHhhhccccCCC
Q 000324 1391 MRAVYIAPLEALAKERYRDWEIKFGQG---LGMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQ 1464 (1665)
Q Consensus 1391 ~r~l~I~PtreLa~Q~~~~~~~~~~~~---~~i~v~~l~G~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~ 1464 (1665)
|.+||+-|++||++|+++.+. .|... ..++...+.|+.... .++..+.||+|+||+|++.++.. ....+.+
T Consensus 287 p~avivepsrelaEqt~N~i~-~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~--g~~~lt~ 363 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIE-EFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISK--GLVTLTH 363 (725)
T ss_pred cceeEecCcHHHHHHHHhhHH-HHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhc--cceeeee
Confidence 689999999999999999777 55543 234444555654333 23445669999999999998876 5667889
Q ss_pred ccEEEeecccccCCCCchhHHHHHHHH----HHHHhhcCCCCeEEEEcccCCCh--HHHH-------HHhcccCCcE---
Q 000324 1465 VSLFIIDELHLIGGQGGPVLEVIVSRM----RYIASQVENKIRIVALSTSLANA--KDLG-------EWIGATSHGL--- 1528 (1665)
Q Consensus 1465 v~llViDEaH~l~~~~g~~~e~~~srl----~~i~~~~~~~~riI~lSATl~n~--~dl~-------~wl~~~~~~~--- 1528 (1665)
++++|+||++.+++.+ |...+.|+ ..+.+. ....|.+..|||+.-. .-++ .|........
T Consensus 364 crFlvlDead~lL~qg---y~d~I~r~h~qip~~tsd-g~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpe 439 (725)
T KOG0349|consen 364 CRFLVLDEADLLLGQG---YDDKIYRFHGQIPHMTSD-GFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPE 439 (725)
T ss_pred eEEEEecchhhhhhcc---cHHHHHHHhccchhhhcC-CcccccceeeeEEeEEEeeehhhhhccCceeEecccccccch
Confidence 9999999999988654 23334333 333221 2578999999998652 2333 2332221111
Q ss_pred --Eec----CCCCCc----c--ceE---EEEe-----ecccchhhHHHHhcCh--hHHHHHHHHhcCCCCEEEEeCchHH
Q 000324 1529 --FNF----PPGVRP----V--PLE---IHIQ-----GVDITNFEARMQAMTK--PTFTAIVQHAKNEKPALVFVPSRKY 1586 (1665)
Q Consensus 1529 --~~f----~~~~rp----v--~l~---i~i~-----~~~~~~~~~~~~~~~k--~~~~~i~~~l~~~~~~IVFv~sr~~ 1586 (1665)
..+ .|+... . +++ +|-. +...+...+....+.+ ....++.++ ...++||||.|+..
T Consensus 440 tvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h--~mdkaiifcrtk~d 517 (725)
T KOG0349|consen 440 TVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH--AMDKAIIFCRTKQD 517 (725)
T ss_pred hhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh--ccCceEEEEecccc
Confidence 111 010000 0 000 0000 0000000111111111 222233333 45679999999999
Q ss_pred HHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1587 VRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1587 a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
|..+-+.+..... -.+.+..+||+..+.+|+..++.|+.+.++.|||
T Consensus 518 cDnLer~~~qkgg--------------------------------~~~scvclhgDrkP~Erk~nle~Fkk~dvkflic 564 (725)
T KOG0349|consen 518 CDNLERMMNQKGG--------------------------------KHYSCVCLHGDRKPDERKANLESFKKFDVKFLIC 564 (725)
T ss_pred chHHHHHHHHcCC--------------------------------ccceeEEEecCCChhHHHHHHHhhhhcCeEEEEE
Confidence 9998877743211 2456899999999999999999999999999999
No 207
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.65 E-value=1.7e-14 Score=187.86 Aligned_cols=343 Identities=16% Similarity=0.148 Sum_probs=176.2
Q ss_pred CCHHHHHHHHHHHcC---------CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000324 496 LNRVQSRVYKSALSS---------ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (1665)
Q Consensus 496 l~~iQ~~~i~~~l~~---------~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~ 566 (1665)
+++.|..++..++.. .++.+++.|||||||+++...+...+... ...++|+|+|+++|..|+
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~---------~~~~vl~lvdR~~L~~Q~ 309 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELL---------KNPKVFFVVDRRELDYQL 309 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhc---------CCCeEEEEECcHHHHHHH
Confidence 567888888776432 35799999999999998876665544221 246899999999999999
Q ss_pred HHHHHHhhccCCcEEEEEECCC-cccHhh-hccccEEEeChhhHHHHHhhcCCCcccc-ceeEEEEecccccccCCchHH
Q 000324 567 VGNLSNRLQMYDVKVRELSGDQ-TLTRQQ-IEETQIIVTTPEKWDIITRKSGDRTYTQ-LVKLLIIDEIHLLHDNRGPVL 643 (1665)
Q Consensus 567 ~~~~~~~~~~~gi~V~~ltGd~-~~~~~~-~~~~~IiV~TPekld~l~r~~~~~~~l~-~v~liIiDEaH~l~d~rg~~l 643 (1665)
.+.|....... + ...+.. .+.... .....|+|+|..++.............. .--+||+||||+... | .+
T Consensus 310 ~~~f~~~~~~~---~-~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~--~-~~ 382 (667)
T TIGR00348 310 MKEFQSLQKDC---A-ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY--G-EL 382 (667)
T ss_pred HHHHHhhCCCC---C-cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc--h-HH
Confidence 99998864210 1 001110 010111 1246899999998753222211101111 112899999997642 1 12
Q ss_pred HHHHHHHHHHHhhccCCeeEEEEcccCCChHHH--HHHHhccccCceEEecC-----CCccccceEEEEeeec-----Cc
Q 000324 644 ESIVARTVRQIETTKEHIRLVGLSATLPNYEDV--ALFLRVNLEKGLFYFDN-----SYRPVPLSQQYIGIQV-----KK 711 (1665)
Q Consensus 644 e~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv--~~~l~~~~~~~~~~f~~-----~~rpv~l~~~~~~~~~-----~~ 711 (1665)
...+. ..-++..++|||||.-...+- ...++......++.+.- ..-.+|+ .|.+... ..
T Consensus 383 ~~~l~-------~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i--~Y~~~~~~~~~~~~ 453 (667)
T TIGR00348 383 AKNLK-------KALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKI--DYEDRLPEDHLDRK 453 (667)
T ss_pred HHHHH-------hhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeE--EEEecchhhccChH
Confidence 22221 123467899999996422111 11111100011111100 0011111 1111100 00
Q ss_pred hhH------------------------HHHH---------HHHHHHHHHHHHh----C--CCeEEEEecChhHHHHHHHH
Q 000324 712 PLQ------------------------RFQL---------MNDLCYEKVVAVA----G--KHQVLIFVHSRKETAKTARA 752 (1665)
Q Consensus 712 ~~~------------------------~~~~---------~~~~~~~~i~~~~----~--~~~vLVFv~sr~~~~~~a~~ 752 (1665)
... .... ....+...+.++. . +++++|||.+|..|..++..
T Consensus 454 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~ 533 (667)
T TIGR00348 454 KLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNA 533 (667)
T ss_pred HHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHH
Confidence 000 0000 0011111222221 1 47999999999999999998
Q ss_pred HHHHhhhcc-ccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCC-CHHHHHHHHHHHhC-CCCCeEEeccc
Q 000324 753 IRDTALEND-TLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGM-TRGDRQLVEDLFGD-GHVQVLVSTAT 829 (1665)
Q Consensus 753 L~~~~~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm-~~~dR~~v~~~F~~-g~i~VLVaT~t 829 (1665)
|.+...... .....+.............. ..+... +..- .......+.+.|++ +.++|||+++.
T Consensus 534 l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~---------~~~~~~----~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdm 600 (667)
T TIGR00348 534 LDEELNEKFEASAIVMTGKESDDAEIRDYN---------KHIRTK----FDKSDGFEIYYKDLERFKKEENPKLLIVVDM 600 (667)
T ss_pred HHhhcccccCCeeEEecCCccchhHHHHHH---------HHhccc----cccchhhhHHHHHHHHhcCCCCceEEEEEcc
Confidence 877643220 00000000000000011100 001000 0000 01133567888976 68999999999
Q ss_pred cccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeC
Q 000324 830 LAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITG 887 (1665)
Q Consensus 830 la~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~ 887 (1665)
+-.|+|.|.+.+++. |-+- .-..++|++||+.|+-...+-.++|+.-
T Consensus 601 llTGFDaP~l~tLyl-----dKpl------k~h~LlQai~R~nR~~~~~K~~g~IvDy 647 (667)
T TIGR00348 601 LLTGFDAPILNTLYL-----DKPL------KYHGLLQAIARTNRIDGKDKTFGLIVDY 647 (667)
T ss_pred cccccCCCccceEEE-----eccc------cccHHHHHHHHhccccCCCCCCEEEEEC
Confidence 999999999988875 3221 2235899999999952222223455543
No 208
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.65 E-value=1.1e-14 Score=183.89 Aligned_cols=129 Identities=17% Similarity=0.056 Sum_probs=100.9
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000324 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~ 1419 (1665)
-.|+++|..+...+..| .++.++||+|||++|.+|++-.... +. .+.+++||++||.|.++.+. .+...+|
T Consensus 55 ~~p~~vQlig~~~l~~G---~Iaem~TGeGKTLva~lpa~l~aL~---G~--~V~VvTpt~~LA~qdae~~~-~l~~~LG 125 (745)
T TIGR00963 55 MRPFDVQLIGGIALHKG---KIAEMKTGEGKTLTATLPAYLNALT---GK--GVHVVTVNDYLAQRDAEWMG-QVYRFLG 125 (745)
T ss_pred CCccchHHhhhhhhcCC---ceeeecCCCccHHHHHHHHHHHHHh---CC--CEEEEcCCHHHHHHHHHHHH-HHhccCC
Confidence 36777777777766543 4999999999999999999644333 22 69999999999999999877 6667789
Q ss_pred cEEEEEeCCCccchh-ccCCCcEEEEChhhH-HHHHHhhh----ccccCCCccEEEeecccccC
Q 000324 1420 MRVVELTGETAMDLK-LLEKGQIIISTPEKW-DALSRRWK----QRKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1420 i~v~~l~G~~~~~~~-~l~~~~IIV~TPe~l-~~l~r~~~----~~~~l~~v~llViDEaH~l~ 1477 (1665)
++++.++|+.+...+ ....++|+++||+++ .++++... ....++.+.++||||+|.++
T Consensus 126 Lsv~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~L 189 (745)
T TIGR00963 126 LSVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSIL 189 (745)
T ss_pred CeEEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHh
Confidence 999999998776533 334579999999999 66666421 12356789999999999775
No 209
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.64 E-value=3.3e-14 Score=158.60 Aligned_cols=258 Identities=19% Similarity=0.239 Sum_probs=179.2
Q ss_pred CCCCHHHHHHHHHHH---cCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcC
Q 000324 1340 KHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll---~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~ 1416 (1665)
.+++|.|..+-..+. +.....+|.|-||+|||.+..-.|-..+.+ ++ ++.+..|....|.+.+.+++..|.
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~---G~--~vciASPRvDVclEl~~Rlk~aF~- 169 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQ---GG--RVCIASPRVDVCLELYPRLKQAFS- 169 (441)
T ss_pred cccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhc---CC--eEEEecCcccchHHHHHHHHHhhc-
Confidence 489999998877765 345569999999999999987777766665 44 999999999999999999998887
Q ss_pred CCCcEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHh
Q 000324 1417 GLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIAS 1496 (1665)
Q Consensus 1417 ~~~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~ 1496 (1665)
+..+..++|+.... -.+++||+|..++..+- +.++++||||+|...-...+.+...+..-+
T Consensus 170 --~~~I~~Lyg~S~~~----fr~plvVaTtHQLlrFk---------~aFD~liIDEVDAFP~~~d~~L~~Av~~ar---- 230 (441)
T COG4098 170 --NCDIDLLYGDSDSY----FRAPLVVATTHQLLRFK---------QAFDLLIIDEVDAFPFSDDQSLQYAVKKAR---- 230 (441)
T ss_pred --cCCeeeEecCCchh----ccccEEEEehHHHHHHH---------hhccEEEEeccccccccCCHHHHHHHHHhh----
Confidence 46899999987655 23899999998877443 468999999999886555556665554433
Q ss_pred hcCCCCeEEEEcccCCChHHHHHHhcccCCcEEe----cCCCCCccceEEEEeecccchhhHHHHhcChhHHHHHHHHhc
Q 000324 1497 QVENKIRIVALSTSLANAKDLGEWIGATSHGLFN----FPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAK 1572 (1665)
Q Consensus 1497 ~~~~~~riI~lSATl~n~~dl~~wl~~~~~~~~~----f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l~ 1572 (1665)
....-+|.||||.++.-+ .-+....-...+ |+...-|+|--+.+..+ .....+ ..+....+..+..+..
T Consensus 231 --k~~g~~IylTATp~k~l~--r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~~--~k~l~r-~kl~~kl~~~lekq~~ 303 (441)
T COG4098 231 --KKEGATIYLTATPTKKLE--RKILKGNLRILKLPARFHGKPLPVPKFVWIGNW--NKKLQR-NKLPLKLKRWLEKQRK 303 (441)
T ss_pred --cccCceEEEecCChHHHH--HHhhhCCeeEeecchhhcCCCCCCCceEEeccH--HHHhhh-ccCCHHHHHHHHHHHh
Confidence 345568999999876421 111111111111 22222333333333222 111111 1122234555666656
Q ss_pred CCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHH
Q 000324 1573 NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVS 1652 (1665)
Q Consensus 1573 ~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~ 1652 (1665)
.+.|++||+|+....+.+|..|.... -...+++.|+. ..+|....
T Consensus 304 ~~~P~liF~p~I~~~eq~a~~lk~~~---------------------------------~~~~i~~Vhs~--d~~R~EkV 348 (441)
T COG4098 304 TGRPVLIFFPEIETMEQVAAALKKKL---------------------------------PKETIASVHSE--DQHRKEKV 348 (441)
T ss_pred cCCcEEEEecchHHHHHHHHHHHhhC---------------------------------Cccceeeeecc--CccHHHHH
Confidence 78999999999999999997773211 12347889986 67899999
Q ss_pred HHHhcCCceEEE
Q 000324 1653 ALFEAGKIKICY 1664 (1665)
Q Consensus 1653 ~~F~~G~i~VLV 1664 (1665)
+.|++|++.+||
T Consensus 349 ~~fR~G~~~lLi 360 (441)
T COG4098 349 EAFRDGKITLLI 360 (441)
T ss_pred HHHHcCceEEEE
Confidence 999999999998
No 210
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.63 E-value=3.6e-15 Score=175.10 Aligned_cols=291 Identities=22% Similarity=0.296 Sum_probs=192.3
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEECCCccc
Q 000324 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLT 591 (1665)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~ 591 (1665)
.-++-+|||.||||--| |+.+... .+.+|--|.|-||.|+++++.+. |+.|..+||.....
T Consensus 192 kIi~H~GPTNSGKTy~A----Lqrl~~a-----------ksGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~ 252 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYRA----LQRLKSA-----------KSGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRF 252 (700)
T ss_pred eEEEEeCCCCCchhHHH----HHHHhhh-----------ccceecchHHHHHHHHHHHhhhc----CCCccccccceeee
Confidence 33777899999999755 4455442 24799999999999999998774 89999999976543
Q ss_pred Hhh-hccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc-CCchHHHHHHHHHHHHHhhccCCeeEEEEccc
Q 000324 592 RQQ-IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (1665)
Q Consensus 592 ~~~-~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSAT 669 (1665)
... -..++.+-||-|+.. .-..+.+.||||+++|.| .||..+...+--+ ....+.+.|=-|-
T Consensus 253 ~~~~~~~a~hvScTVEM~s----------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl------~AdEiHLCGepsv 316 (700)
T KOG0953|consen 253 VLDNGNPAQHVSCTVEMVS----------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGL------AADEIHLCGEPSV 316 (700)
T ss_pred cCCCCCcccceEEEEEEee----------cCCceEEEEehhHHhhcCcccchHHHHHHHhh------hhhhhhccCCchH
Confidence 321 235778889988522 234478999999999999 6998776544333 2234444444344
Q ss_pred CCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHH
Q 000324 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKT 749 (1665)
Q Consensus 670 l~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~ 749 (1665)
++=.+++..-.+.. +....-.|-.|+... +.....+ .....+.++| |-||++...+
T Consensus 317 ldlV~~i~k~TGd~-----vev~~YeRl~pL~v~-----------------~~~~~sl-~nlk~GDCvV-~FSkk~I~~~ 372 (700)
T KOG0953|consen 317 LDLVRKILKMTGDD-----VEVREYERLSPLVVE-----------------ETALGSL-SNLKPGDCVV-AFSKKDIFTV 372 (700)
T ss_pred HHHHHHHHhhcCCe-----eEEEeecccCcceeh-----------------hhhhhhh-ccCCCCCeEE-EeehhhHHHH
Confidence 43222332222221 111111222232210 0111111 1223455544 5578888888
Q ss_pred HHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhC--CCCCeEEec
Q 000324 750 ARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGD--GHVQVLVST 827 (1665)
Q Consensus 750 a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~--g~i~VLVaT 827 (1665)
...+...+. ..+++.+|+|+++.|...-.+|.+ +..+|||||
T Consensus 373 k~kIE~~g~------------------------------------~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAs 416 (700)
T KOG0953|consen 373 KKKIEKAGN------------------------------------HKCAVIYGSLPPETRLAQAALFNDPSNECDVLVAS 416 (700)
T ss_pred HHHHHHhcC------------------------------------cceEEEecCCCCchhHHHHHHhCCCCCccceEEee
Confidence 777766542 236888999999999999999987 899999999
Q ss_pred cccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEe-CCCcHHHHHHhhcC
Q 000324 828 ATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT-GHSELRYYLSLMNQ 900 (1665)
Q Consensus 828 ~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~-~~~~~~~y~~ll~~ 900 (1665)
++.++|+|+.-.++|+..-..|+... ..+++..+..|.+|||||-|- +...+++-+ ..+++..+.+.+..
T Consensus 417 DAIGMGLNL~IrRiiF~sl~Kysg~e--~~~it~sqikQIAGRAGRf~s-~~~~G~vTtl~~eDL~~L~~~l~~ 487 (700)
T KOG0953|consen 417 DAIGMGLNLNIRRIIFYSLIKYSGRE--TEDITVSQIKQIAGRAGRFGS-KYPQGEVTTLHSEDLKLLKRILKR 487 (700)
T ss_pred cccccccccceeEEEEeecccCCccc--ceeccHHHHHHHhhccccccc-CCcCceEEEeeHhhHHHHHHHHhC
Confidence 99999999988888887777787543 688999999999999999763 222333333 23555666555543
No 211
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.62 E-value=6.7e-14 Score=184.73 Aligned_cols=325 Identities=18% Similarity=0.219 Sum_probs=185.2
Q ss_pred CCCHHHHHHHHHHH---cCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000324 495 QLNRVQSRVYKSAL---SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l---~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (1665)
+|.++|.+.+..++ ..+.+.|++-..|.|||+.++.. +..+...... ...+|||+|. ++..++.+.|.
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIal-L~~L~~~~~~-------~gp~LIVvP~-SlL~nW~~Ei~ 239 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISL-LGYLHEYRGI-------TGPHMVVAPK-STLGNWMNEIR 239 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHH-HHHHHHhcCC-------CCCEEEEeCh-HHHHHHHHHHH
Confidence 78999999998765 34567899999999999987443 3334332111 2368999995 67788999998
Q ss_pred HhhccCCcEEEEEECCCcccHhh------hccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHH
Q 000324 572 NRLQMYDVKVRELSGDQTLTRQQ------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES 645 (1665)
Q Consensus 572 ~~~~~~gi~V~~ltGd~~~~~~~------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~ 645 (1665)
+++. .+++..++|+....... ....+|+|+|++.+. +.... ..--..++|||||+|.+-....
T Consensus 240 kw~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~---~e~~~-L~k~~W~~VIvDEAHrIKN~~S----- 308 (1033)
T PLN03142 240 RFCP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAI---KEKTA-LKRFSWRYIIIDEAHRIKNENS----- 308 (1033)
T ss_pred HHCC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHH---HHHHH-hccCCCCEEEEcCccccCCHHH-----
Confidence 8764 46788888865432211 235789999999642 21110 0112368999999999865321
Q ss_pred HHHHHHHHHhhccCCeeEEEEcccCC--ChHHHHHHHhccccCceEE----e------cC-------------CCcc---
Q 000324 646 IVARTVRQIETTKEHIRLVGLSATLP--NYEDVALFLRVNLEKGLFY----F------DN-------------SYRP--- 697 (1665)
Q Consensus 646 iv~r~~~~~~~~~~~~riV~lSATl~--n~~dv~~~l~~~~~~~~~~----f------~~-------------~~rp--- 697 (1665)
.+++.++.+ ... ..++||+|.- |..++...+..-. .++|. | .. -.+|
T Consensus 309 klskalr~L---~a~-~RLLLTGTPlqNnl~ELwsLL~FL~-P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~L 383 (1033)
T PLN03142 309 LLSKTMRLF---STN-YRLLITGTPLQNNLHELWALLNFLL-PEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLL 383 (1033)
T ss_pred HHHHHHHHh---hcC-cEEEEecCCCCCCHHHHHHHHhcCC-CCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHh
Confidence 122332222 223 3478999943 2444433332110 00000 0 00 0000
Q ss_pred ----------c-cceEEEEeeecCchhHH-HHHHH-----------------HHHH------------------------
Q 000324 698 ----------V-PLSQQYIGIQVKKPLQR-FQLMN-----------------DLCY------------------------ 724 (1665)
Q Consensus 698 ----------v-~l~~~~~~~~~~~~~~~-~~~~~-----------------~~~~------------------------ 724 (1665)
. |.....+.+........ +..+. ..+.
T Consensus 384 RR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~ 463 (1033)
T PLN03142 384 RRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTG 463 (1033)
T ss_pred hhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccch
Confidence 0 11112222221110000 00000 0000
Q ss_pred -------------HHHHHH--hCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchh
Q 000324 725 -------------EKVVAV--AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (1665)
Q Consensus 725 -------------~~i~~~--~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l 789 (1665)
..++.. ..+.++|||+........+...|.
T Consensus 464 e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~----------------------------------- 508 (1033)
T PLN03142 464 EHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLM----------------------------------- 508 (1033)
T ss_pred hHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHH-----------------------------------
Confidence 000000 012344444433322222222221
Q ss_pred hhhcCCcEEEecCCCCHHHHHHHHHHHhCC---CCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHh
Q 000324 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDG---HVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQ 866 (1665)
Q Consensus 790 ~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g---~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Q 866 (1665)
...+++..+||+++..+|..+.+.|... ..-+|+||.+.+.||||...++||. ||+.- ++....|
T Consensus 509 --~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIi----yD~dW------NP~~d~Q 576 (1033)
T PLN03142 509 --YRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVIL----YDSDW------NPQVDLQ 576 (1033)
T ss_pred --HcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEE----eCCCC------ChHHHHH
Confidence 1235567789999999999999999753 3457899999999999999999999 55442 5667999
Q ss_pred hhcccCCCCCCCceEEEEEeCCCcH
Q 000324 867 MLGRAGRPQYDSYGEGIIITGHSEL 891 (1665)
Q Consensus 867 r~GRAGR~g~d~~G~~iil~~~~~~ 891 (1665)
++|||-|.|..+.-.+|.+++....
T Consensus 577 AidRaHRIGQkk~V~VyRLIt~gTI 601 (1033)
T PLN03142 577 AQDRAHRIGQKKEVQVFRFCTEYTI 601 (1033)
T ss_pred HHHHhhhcCCCceEEEEEEEeCCcH
Confidence 9999999997666566666666543
No 212
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.62 E-value=4.9e-14 Score=181.86 Aligned_cols=259 Identities=18% Similarity=0.229 Sum_probs=195.2
Q ss_pred CCC-CCCHHHHHHHHHHHc-----CCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHH
Q 000324 1338 GFK-HFNPIQTQVFTVLYN-----TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (1665)
Q Consensus 1338 ~f~-~~~~iQ~qa~~~ll~-----~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~ 1411 (1665)
+|. .-||=|..|+..+.. ..-+-+||+--|.|||.+|+=|++..... ++ ++.++|||--||.|.++.|+
T Consensus 590 ~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~---GK--QVAvLVPTTlLA~QHy~tFk 664 (1139)
T COG1197 590 SFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD---GK--QVAVLVPTTLLAQQHYETFK 664 (1139)
T ss_pred cCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC---CC--eEEEEcccHHhHHHHHHHHH
Confidence 454 579999999999874 22357999999999999999999887776 33 99999999999999999999
Q ss_pred HHhcCCCCcEEEEEeCCCccc-----hhccCCC--cEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhH
Q 000324 1412 IKFGQGLGMRVVELTGETAMD-----LKLLEKG--QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVL 1484 (1665)
Q Consensus 1412 ~~~~~~~~i~v~~l~G~~~~~-----~~~l~~~--~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~ 1484 (1665)
++|.. .+++|..+.-=.+.. .+.++.+ ||||+|= .++ .....+.+++|+||||-|+.+=..
T Consensus 665 eRF~~-fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH----rLL---~kdv~FkdLGLlIIDEEqRFGVk~---- 732 (1139)
T COG1197 665 ERFAG-FPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH----RLL---SKDVKFKDLGLLIIDEEQRFGVKH---- 732 (1139)
T ss_pred HHhcC-CCeeEEEecccCCHHHHHHHHHHHhcCCccEEEech----Hhh---CCCcEEecCCeEEEechhhcCccH----
Confidence 99986 478888887655544 2233444 9999992 222 245568899999999999997322
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEcccCCChHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcChhHH
Q 000324 1485 EVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTF 1564 (1665)
Q Consensus 1485 e~~~srl~~i~~~~~~~~riI~lSATl~n~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~ 1564 (1665)
-.+++.+ ..++-++-||||+-+-.--..-.|...-.+..-+|. +..|+..++..++. ....
T Consensus 733 ---KEkLK~L----r~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~-~R~pV~T~V~~~d~-----------~~ir 793 (1139)
T COG1197 733 ---KEKLKEL----RANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPE-DRLPVKTFVSEYDD-----------LLIR 793 (1139)
T ss_pred ---HHHHHHH----hccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCC-CCcceEEEEecCCh-----------HHHH
Confidence 2344433 568889999999755332233345544444444444 44477777766542 2344
Q ss_pred HHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCC
Q 000324 1565 TAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLN 1644 (1665)
Q Consensus 1565 ~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~ 1644 (1665)
.+|+..+..++++-..+|..+....++..|....+ ...|++-||.|+
T Consensus 794 eAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVP---------------------------------EarI~vaHGQM~ 840 (1139)
T COG1197 794 EAILRELLRGGQVFYVHNRVESIEKKAERLRELVP---------------------------------EARIAVAHGQMR 840 (1139)
T ss_pred HHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCC---------------------------------ceEEEEeecCCC
Confidence 56777778999999999999999999988853322 235999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEC
Q 000324 1645 KTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1645 ~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
..+-..|+..|.+|+.+||||
T Consensus 841 e~eLE~vM~~F~~g~~dVLv~ 861 (1139)
T COG1197 841 ERELEEVMLDFYNGEYDVLVC 861 (1139)
T ss_pred HHHHHHHHHHHHcCCCCEEEE
Confidence 999999999999999999999
No 213
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.60 E-value=4.5e-13 Score=177.39 Aligned_cols=84 Identities=20% Similarity=0.337 Sum_probs=64.7
Q ss_pred cCCCCCCCHHHHH---HHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000324 490 FKGMTQLNRVQSR---VYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (1665)
Q Consensus 490 f~g~~~l~~iQ~~---~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~ 566 (1665)
+.|| +.++-|.+ ++..++.++..+++.|+||+|||++|++|++... .+.++|+++||++|++|+
T Consensus 241 ~~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~------------~~~~vvI~t~T~~Lq~Ql 307 (820)
T PRK07246 241 LLGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS------------DQRQIIVSVPTKILQDQI 307 (820)
T ss_pred cCCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc------------CCCcEEEEeCcHHHHHHH
Confidence 3566 68999999 5555677788899999999999999999988643 134799999999999999
Q ss_pred H-HHHHHhhccCCcEEEEEEC
Q 000324 567 V-GNLSNRLQMYDVKVRELSG 586 (1665)
Q Consensus 567 ~-~~~~~~~~~~gi~V~~ltG 586 (1665)
. +.+..+.+.+++++..+.|
T Consensus 308 ~~~~i~~l~~~~~~~~~~~kg 328 (820)
T PRK07246 308 MAEEVKAIQEVFHIDCHSLKG 328 (820)
T ss_pred HHHHHHHHHHhcCCcEEEEEC
Confidence 5 5555544445666665554
No 214
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.59 E-value=3.6e-13 Score=173.37 Aligned_cols=114 Identities=18% Similarity=0.230 Sum_probs=96.1
Q ss_pred CCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHH
Q 000324 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (1665)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~ 811 (1665)
.+.++||||+|++.++.++..|.+.+. .+.++||+++..+|..
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~gi-------------------------------------~~~~lh~~~~~~eR~~ 483 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELGI-------------------------------------KVRYLHSEIDTLERVE 483 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhcc-------------------------------------ceeeeeCCCCHHHHHH
Confidence 367999999999999999999987642 2566799999999999
Q ss_pred HHHHHhCCCCCeEEeccccccccCCCceEEEEec-ccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCc
Q 000324 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKG-TQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (1665)
Q Consensus 812 v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~-t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~ 890 (1665)
+++.|+.|.+.|||||+.+++|+|+|++.+||.. ...+..+. +..+|+||+|||||. ..|.++++++..+
T Consensus 484 ~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~DadifG~p~------~~~~~iqriGRagR~---~~G~vi~~~~~~~ 554 (655)
T TIGR00631 484 IIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLR------SERSLIQTIGRAARN---VNGKVIMYADKIT 554 (655)
T ss_pred HHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCcccccCCC------CHHHHHHHhcCCCCC---CCCEEEEEEcCCC
Confidence 9999999999999999999999999999988872 12222333 788999999999996 4799999988655
Q ss_pred H
Q 000324 891 L 891 (1665)
Q Consensus 891 ~ 891 (1665)
.
T Consensus 555 ~ 555 (655)
T TIGR00631 555 D 555 (655)
T ss_pred H
Confidence 3
No 215
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.59 E-value=1.1e-13 Score=171.35 Aligned_cols=312 Identities=18% Similarity=0.235 Sum_probs=181.7
Q ss_pred CCCCCHHHHHHHHHHH----cCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHH
Q 000324 493 MTQLNRVQSRVYKSAL----SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (1665)
Q Consensus 493 ~~~l~~iQ~~~i~~~l----~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~ 568 (1665)
-..++.+|..|+..+. .++..+|+++.||+|||..|+..| ..|.+... -.+||+++-+++|+.|.+.
T Consensus 163 ~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii-~rL~r~~~--------~KRVLFLaDR~~Lv~QA~~ 233 (875)
T COG4096 163 AIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAII-DRLIKSGW--------VKRVLFLADRNALVDQAYG 233 (875)
T ss_pred cccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHH-HHHHhcch--------hheeeEEechHHHHHHHHH
Confidence 3578999999997654 345569999999999999986544 44444322 3489999999999999999
Q ss_pred HHHHhhccCCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhc---CCCccccceeEEEEecccccccCCchHHHH
Q 000324 569 NLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS---GDRTYTQLVKLLIIDEIHLLHDNRGPVLES 645 (1665)
Q Consensus 569 ~~~~~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~---~~~~~l~~v~liIiDEaH~l~d~rg~~le~ 645 (1665)
.|...+ +.+-.+..+.+-.... .++|.|+|...+....... ........++||||||||+=.- ..+..
T Consensus 234 af~~~~-P~~~~~n~i~~~~~~~-----s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~---~~~~~ 304 (875)
T COG4096 234 AFEDFL-PFGTKMNKIEDKKGDT-----SSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIY---SEWSS 304 (875)
T ss_pred HHHHhC-CCccceeeeecccCCc-----ceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHH---hhhHH
Confidence 988755 4454454444432221 5789999999863333222 1223445689999999996321 11223
Q ss_pred HHHHHHHHHhhccCCeeEEEEcccCCChHHHH--HHHhccccCceEE--------ecCCCccccceEE--EEeeecCch-
Q 000324 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVA--LFLRVNLEKGLFY--------FDNSYRPVPLSQQ--YIGIQVKKP- 712 (1665)
Q Consensus 646 iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~--~~l~~~~~~~~~~--------f~~~~rpv~l~~~--~~~~~~~~~- 712 (1665)
|+..+ ...++|++||+.+-.+.. .|+...|. ..+. |-..++++.+... .-|+.....
T Consensus 305 I~dYF---------dA~~~gLTATP~~~~d~~T~~~F~g~Pt-~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~s 374 (875)
T COG4096 305 ILDYF---------DAATQGLTATPKETIDRSTYGFFNGEPT-YAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGS 374 (875)
T ss_pred HHHHH---------HHHHHhhccCcccccccccccccCCCcc-eeecHHHHhhccccCCCCceEEeeeccccCcCcCccc
Confidence 44332 122367799976533332 23311110 0000 0011222221111 111111100
Q ss_pred ---------------------hH-------HHHHHHHHHHHHHHHH-hC--CCeEEEEecChhHHHHHHHHHHHHhhhcc
Q 000324 713 ---------------------LQ-------RFQLMNDLCYEKVVAV-AG--KHQVLIFVHSRKETAKTARAIRDTALEND 761 (1665)
Q Consensus 713 ---------------------~~-------~~~~~~~~~~~~i~~~-~~--~~~vLVFv~sr~~~~~~a~~L~~~~~~~~ 761 (1665)
.. +...+...+-+.+... .+ -+++||||.+..+|+.+...|.......+
T Consensus 375 erek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~ 454 (875)
T COG4096 375 EREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYN 454 (875)
T ss_pred hhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCcccc
Confidence 00 0111111122222221 11 36899999999999999999987654321
Q ss_pred ccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHh-CCCCCeEEeccccccccCCCceE
Q 000324 762 TLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFG-DGHVQVLVSTATLAWGVNLPAHT 840 (1665)
Q Consensus 762 ~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~-~g~i~VLVaT~tla~GVdlP~v~ 840 (1665)
+.+ +-...+. ...++..+-+.+. +.--+|.|+.+.+..|||+|.+.
T Consensus 455 --~~~------------------------------a~~IT~d-~~~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~ 501 (875)
T COG4096 455 --GRY------------------------------AMKITGD-AEQAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVV 501 (875)
T ss_pred --Cce------------------------------EEEEecc-chhhHHHHHHHHhcCCCCceEEehhhhhcCCCchhee
Confidence 000 1111222 2344455544444 44567899999999999999999
Q ss_pred EEEecccccCCCCCCcccCCHHHHHhhhcccCCCC
Q 000324 841 VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQ 875 (1665)
Q Consensus 841 vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g 875 (1665)
.++- +-.- .|..-|.||+||+-|.-
T Consensus 502 nlVF-----~r~V-----rSktkF~QMvGRGTRl~ 526 (875)
T COG4096 502 NLVF-----DRKV-----RSKTKFKQMVGRGTRLC 526 (875)
T ss_pred eeee-----hhhh-----hhHHHHHHHhcCccccC
Confidence 8884 3222 28889999999999953
No 216
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.58 E-value=4e-14 Score=164.98 Aligned_cols=355 Identities=13% Similarity=0.048 Sum_probs=230.5
Q ss_pred hhhHhhcCCC--CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHH
Q 000324 484 EWAQPAFKGM--TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (1665)
Q Consensus 484 ~~~~~~f~g~--~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ra 561 (1665)
+.++..+.|. +.+..+|.+++..+-+ ++|+++.-.|.+||.+++.++....+.... ....+|+.||++
T Consensus 273 E~~~~~~~~~~~E~~~~~~~~~~~~~~~-G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~---------~s~~~~~~~~~~ 342 (1034)
T KOG4150|consen 273 ESIRSLLNKNTGESGIAISLELLKFASE-GRADGGNEARQAGKGTCPTSGSRKFQTLCH---------ATNSLLPSEMVE 342 (1034)
T ss_pred HHHHHHHhcccccchhhhhHHHHhhhhh-cccccccchhhcCCccCcccchhhhhhcCc---------ccceecchhHHH
Confidence 3444555444 4678899999997654 577999999999999999998887765532 235789999999
Q ss_pred HHHHHHHHHHHhhccC----CcEEEEEECCCcccHhh--hccccEEEeChhhH-HHHHhhc-CCCccccceeEEEEeccc
Q 000324 562 LVAEVVGNLSNRLQMY----DVKVRELSGDQTLTRQQ--IEETQIIVTTPEKW-DIITRKS-GDRTYTQLVKLLIIDEIH 633 (1665)
Q Consensus 562 La~q~~~~~~~~~~~~----gi~V~~ltGd~~~~~~~--~~~~~IiV~TPekl-d~l~r~~-~~~~~l~~v~liIiDEaH 633 (1665)
+++...+-+.-.+... +--|....|++..++.. ..+.+++++.|... ..++-+. --..++-...++++||+|
T Consensus 343 ~~~~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~ 422 (1034)
T KOG4150|consen 343 HLRNGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCA 422 (1034)
T ss_pred HhhccCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhccccee
Confidence 9987654443222111 22244445555544443 35789999999874 3333332 223344556889999999
Q ss_pred ccccCCchHHHHHHHHHHHHHhh--ccCCeeEEEEcccCCChHHH-HHHHhccccCceEEecCCCccccceEEEEeee--
Q 000324 634 LLHDNRGPVLESIVARTVRQIET--TKEHIRLVGLSATLPNYEDV-ALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQ-- 708 (1665)
Q Consensus 634 ~l~d~rg~~le~iv~r~~~~~~~--~~~~~riV~lSATl~n~~dv-~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~-- 708 (1665)
.....+|......+.++.+.+.. ...+.+++-.|||+.+.... .+..+.+ ...++..+++ |..-...++.-+
T Consensus 423 ~Y~~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~-E~~Li~~DGS--Ps~~K~~V~WNP~~ 499 (1034)
T KOG4150|consen 423 LYLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLS-ELELVTIDGS--PSSEKLFVLWNPSA 499 (1034)
T ss_pred eeecchhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCc-ceEEEEecCC--CCccceEEEeCCCC
Confidence 98877887777777777665543 24678999999999875443 3344433 2234444433 222221111111
Q ss_pred -c---CchhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhcc
Q 000324 709 -V---KKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMV 784 (1665)
Q Consensus 709 -~---~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~ 784 (1665)
. .+..........++.+.+. .+-++|-||++|+-|+-+....++...+... . +..
T Consensus 500 ~P~~~~~~~~~i~E~s~~~~~~i~---~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~------------~-LV~----- 558 (1034)
T KOG4150|consen 500 PPTSKSEKSSKVVEVSHLFAEMVQ---HGLRCIAFCPSRKLCELVLCLTREILAETAP------------H-LVE----- 558 (1034)
T ss_pred CCcchhhhhhHHHHHHHHHHHHHH---cCCcEEEeccHHHHHHHHHHHHHHHHHHhhH------------H-HHH-----
Confidence 1 1111222222333333332 2568999999999998887766665433211 0 000
Q ss_pred ccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHH
Q 000324 785 KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDI 864 (1665)
Q Consensus 785 ~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~ 864 (1665)
.|.-+.||-+.+||+.++...-.|++.-+|||++|+-|||+-..+.|++ ...| +|++.+
T Consensus 559 -----------~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~----~GFP------~S~aNl 617 (1034)
T KOG4150|consen 559 -----------AITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLH----LGFP------GSIANL 617 (1034)
T ss_pred -----------HHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEE----ccCc------hhHHHH
Confidence 1233489999999999999999999999999999999999999999998 4444 388999
Q ss_pred HhhhcccCCCCCCCceEEEEEeCCC-cHHHHH
Q 000324 865 MQMLGRAGRPQYDSYGEGIIITGHS-ELRYYL 895 (1665)
Q Consensus 865 ~Qr~GRAGR~g~d~~G~~iil~~~~-~~~~y~ 895 (1665)
.|.+|||||.. +...++.+.... --++|.
T Consensus 618 ~QQ~GRAGRRN--k~SLavyva~~~PVDQ~Y~ 647 (1034)
T KOG4150|consen 618 WQQAGRAGRRN--KPSLAVYVAFLGPVDQYYM 647 (1034)
T ss_pred HHHhccccccC--CCceEEEEEeccchhhHhh
Confidence 99999999977 445555554432 234554
No 217
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.58 E-value=1.3e-13 Score=184.47 Aligned_cols=257 Identities=15% Similarity=0.190 Sum_probs=161.9
Q ss_pred HHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 000324 1350 FTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGET 1429 (1665)
Q Consensus 1350 ~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~ 1429 (1665)
|...+.+++.++|+|+||||||. .+|.+-.-......+ ++++.-|.|--|..++.++.+.++...|..|+.-.
T Consensus 75 Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~~~~~~--~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~v--- 147 (1283)
T TIGR01967 75 IAEAIAENQVVIIAGETGSGKTT--QLPKICLELGRGSHG--LIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKV--- 147 (1283)
T ss_pred HHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcCCCCCc--eEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEE---
Confidence 33344456678999999999999 456543222111223 77788999999999998888777655555554322
Q ss_pred ccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeeccc-ccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEc
Q 000324 1430 AMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH-LIGGQGGPVLEVIVSRMRYIASQVENKIRIVALS 1508 (1665)
Q Consensus 1430 ~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH-~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lS 1508 (1665)
..+.+.-...+|+++|||.+...+.. ...+.++++|||||+| +..+.. .++..++.+... .++.|+|+||
T Consensus 148 R~~~~~s~~T~I~~~TdGiLLr~l~~---d~~L~~~~~IIIDEaHERsL~~D-----~LL~lLk~il~~-rpdLKlIlmS 218 (1283)
T TIGR01967 148 RFHDQVSSNTLVKLMTDGILLAETQQ---DRFLSRYDTIIIDEAHERSLNID-----FLLGYLKQLLPR-RPDLKIIITS 218 (1283)
T ss_pred cCCcccCCCceeeeccccHHHHHhhh---CcccccCcEEEEcCcchhhccch-----hHHHHHHHHHhh-CCCCeEEEEe
Confidence 12222234678999999999876653 3568999999999999 454422 133334444433 3578999999
Q ss_pred ccCCChHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchh---hHHHHhcChhHHHHHHHHh-cCCCCEEEEeCch
Q 000324 1509 TSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNF---EARMQAMTKPTFTAIVQHA-KNEKPALVFVPSR 1584 (1665)
Q Consensus 1509 ATl~n~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~---~~~~~~~~k~~~~~i~~~l-~~~~~~IVFv~sr 1584 (1665)
||+. ...++++++..+ ++.... +..|++++......... ..... .....+.... ...+.+|||+|++
T Consensus 219 ATld-~~~fa~~F~~ap--vI~V~G--r~~PVev~Y~~~~~~~~~~~~~~~~----~i~~~I~~l~~~~~GdILVFLpg~ 289 (1283)
T TIGR01967 219 ATID-PERFSRHFNNAP--IIEVSG--RTYPVEVRYRPLVEEQEDDDLDQLE----AILDAVDELFAEGPGDILIFLPGE 289 (1283)
T ss_pred CCcC-HHHHHHHhcCCC--EEEECC--CcccceeEEecccccccchhhhHHH----HHHHHHHHHHhhCCCCEEEeCCCH
Confidence 9994 678888886432 344333 33445544432211110 00111 1111222211 2346799999999
Q ss_pred HHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEE
Q 000324 1585 KYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICY 1664 (1665)
Q Consensus 1585 ~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLV 1664 (1665)
++++.++..|..... -...|..+||+|++.+|..+++.+ +..+|||
T Consensus 290 ~EI~~l~~~L~~~~~--------------------------------~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVL 335 (1283)
T TIGR01967 290 REIRDAAEILRKRNL--------------------------------RHTEILPLYARLSNKEQQRVFQPH--SGRRIVL 335 (1283)
T ss_pred HHHHHHHHHHHhcCC--------------------------------CCcEEEeccCCCCHHHHHHHhCCC--CCceEEE
Confidence 999999988742110 012378899999999999986554 3468888
Q ss_pred C
Q 000324 1665 R 1665 (1665)
Q Consensus 1665 C 1665 (1665)
|
T Consensus 336 A 336 (1283)
T TIGR01967 336 A 336 (1283)
T ss_pred e
Confidence 6
No 218
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.57 E-value=1e-13 Score=186.70 Aligned_cols=175 Identities=16% Similarity=0.112 Sum_probs=108.7
Q ss_pred CCCCHHHHHHHHHHH----cCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhc
Q 000324 1340 KHFNPIQTQVFTVLY----NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll----~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~ 1415 (1665)
..++++|.+|+..+. ++..++++++|||||||.++...+.+.+.. .... ++|||+|+++|+.|..+.|. .++
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~-~~~~--rVLfLvDR~~L~~Qa~~~F~-~~~ 487 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKA-KRFR--RILFLVDRSALGEQAEDAFK-DTK 487 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhc-CccC--eEEEEecHHHHHHHHHHHHH-hcc
Confidence 358999999998876 356679999999999999976555444443 2333 99999999999999999988 443
Q ss_pred CCCCcEEEEEeCCCcc-chhccCCCcEEEEChhhHHHHHHhhh---ccccCCCccEEEeecccccCC------CC---ch
Q 000324 1416 QGLGMRVVELTGETAM-DLKLLEKGQIIISTPEKWDALSRRWK---QRKYVQQVSLFIIDELHLIGG------QG---GP 1482 (1665)
Q Consensus 1416 ~~~~i~v~~l~G~~~~-~~~~l~~~~IIV~TPe~l~~l~r~~~---~~~~l~~v~llViDEaH~l~~------~~---g~ 1482 (1665)
...+..+..+.+.... +...-..++|+|||...+........ ....+..+++||+||||+... .+ ..
T Consensus 488 ~~~~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~ 567 (1123)
T PRK11448 488 IEGDQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFR 567 (1123)
T ss_pred cccccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccc
Confidence 2112122111111110 11112356999999998765432111 113467899999999998531 11 01
Q ss_pred hHHHHHHHHHHHHhhcCCCCeEEEEcccCCChHHHHHHhc
Q 000324 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIG 1522 (1665)
Q Consensus 1483 ~~e~~~srl~~i~~~~~~~~riI~lSATl~n~~dl~~wl~ 1522 (1665)
......+..+.+...+ +...||||||+.. .-...+|
T Consensus 568 ~~~~~~~~yr~iL~yF--dA~~IGLTATP~r--~t~~~FG 603 (1123)
T PRK11448 568 DQLDYVSKYRRVLDYF--DAVKIGLTATPAL--HTTEIFG 603 (1123)
T ss_pred hhhhHHHHHHHHHhhc--CccEEEEecCCcc--chhHHhC
Confidence 1111234455555443 3567999999863 3344455
No 219
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.57 E-value=1.8e-12 Score=174.98 Aligned_cols=204 Identities=16% Similarity=0.204 Sum_probs=120.8
Q ss_pred eEEEEcccCCC---hHHHHHHHhccccC-ceEEecCCCccccceEEEEe--eecC---chhHHHHHHHHHHHHHHHHHhC
Q 000324 662 RLVGLSATLPN---YEDVALFLRVNLEK-GLFYFDNSYRPVPLSQQYIG--IQVK---KPLQRFQLMNDLCYEKVVAVAG 732 (1665)
Q Consensus 662 riV~lSATl~n---~~dv~~~l~~~~~~-~~~~f~~~~rpv~l~~~~~~--~~~~---~~~~~~~~~~~~~~~~i~~~~~ 732 (1665)
.+|++||||.. ..-+...++..... ....+.+.|....-..-++. ++.. ........+.+.+.+. .. ..
T Consensus 674 ~~iltSATL~~~~~f~~~~~~lGl~~~~~~~~~~~SpF~~~~q~~l~vp~d~p~~~~~~~~~~~~~la~~i~~l-~~-~~ 751 (928)
T PRK08074 674 SVILTSATLTVNGSFDYIIERLGLEDFYPRTLQIPSPFSYEEQAKLMIPTDMPPIKDVPIEEYIEEVAAYIAKI-AK-AT 751 (928)
T ss_pred cEEEEeeecccCCCcHHHHHhcCCCCCCccEEEeCCCCCHHHhcEEEeecCCCCCCCCChHHHHHHHHHHHHHH-HH-hC
Confidence 57888999873 44455667654211 23344444322111111221 1111 1112223333333332 22 23
Q ss_pred CCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHH
Q 000324 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (1665)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v 812 (1665)
++++|||++|.+....++..|...... .++.+.--|++...|..+
T Consensus 752 ~g~~LVLFtSy~~l~~v~~~l~~~~~~-----------------------------------~~~~ll~Qg~~~~~r~~l 796 (928)
T PRK08074 752 KGRMLVLFTSYEMLKKTYYNLKNEEEL-----------------------------------EGYVLLAQGVSSGSRARL 796 (928)
T ss_pred CCCEEEEECCHHHHHHHHHHHhhcccc-----------------------------------cCceEEecCCCCCCHHHH
Confidence 679999999999999999888753211 011112224555668889
Q ss_pred HHHHhCCCCCeEEeccccccccCCCce--EEEEecccccCCCCC----------------CcccC----CHHHHHhhhcc
Q 000324 813 EDLFGDGHVQVLVSTATLAWGVNLPAH--TVIIKGTQIYNPEKG----------------AWTEL----SPLDIMQMLGR 870 (1665)
Q Consensus 813 ~~~F~~g~i~VLVaT~tla~GVdlP~v--~vVI~~t~~yd~~~g----------------~~~~~----s~~~~~Qr~GR 870 (1665)
.+.|+.+.-.||++|..+..|||+|+- ..||--..||.+|.. .|.++ .+..+.|-+||
T Consensus 797 ~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GR 876 (928)
T PRK08074 797 TKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGR 876 (928)
T ss_pred HHHHHhcCCeEEEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhh
Confidence 999999888999999999999999984 555555567765542 13333 25677899999
Q ss_pred cCCCCCCCceEEEEEeCCCcHHHHHHhhcCCCc
Q 000324 871 AGRPQYDSYGEGIIITGHSELRYYLSLMNQQLP 903 (1665)
Q Consensus 871 AGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~p 903 (1665)
.-|... ..|..+++-..-....|-+.+-..+|
T Consensus 877 lIRs~~-D~G~v~ilD~R~~~k~Yg~~~l~sLP 908 (928)
T PRK08074 877 LIRTET-DRGTVFVLDRRLTTTSYGKYFLESLP 908 (928)
T ss_pred hcccCC-ceEEEEEecCccccchHHHHHHHhCC
Confidence 999764 46876666665445556555455555
No 220
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.57 E-value=9.5e-14 Score=154.36 Aligned_cols=174 Identities=21% Similarity=0.244 Sum_probs=127.3
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000324 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (1665)
Q Consensus 1338 ~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~ 1417 (1665)
++..++++|.++++.++++..++++++|||+|||.++..+++..+.... .. +++|++|+++++.|+...+.+.+...
T Consensus 5 ~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-~~--~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 5 GFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK-GK--RVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC-CC--cEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 4788999999999999986356999999999999999999998887732 23 89999999999999999998555432
Q ss_pred CCcEEEEEeCCCccc--hhccCCC-cEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCC-CCchhHHHHHHHHHH
Q 000324 1418 LGMRVVELTGETAMD--LKLLEKG-QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRY 1493 (1665)
Q Consensus 1418 ~~i~v~~l~G~~~~~--~~~l~~~-~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~-~~g~~~e~~~srl~~ 1493 (1665)
.......+.+..... ....... +++++|++.+........ .....++++|+||+|.+.. .... .+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~--~~~~~~~~iIiDE~h~~~~~~~~~-------~~~~ 152 (201)
T smart00487 82 GLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL--LELSNVDLVILDEAHRLLDGGFGD-------QLEK 152 (201)
T ss_pred CeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC--cCHhHCCEEEEECHHHHhcCCcHH-------HHHH
Confidence 224455555543221 1233344 999999999988777632 4567899999999999975 3322 3333
Q ss_pred HHhhcCCCCeEEEEcccCCChHHHHHHhcc
Q 000324 1494 IASQVENKIRIVALSTSLANAKDLGEWIGA 1523 (1665)
Q Consensus 1494 i~~~~~~~~riI~lSATl~n~~dl~~wl~~ 1523 (1665)
+........+++++|||+++..+...|...
T Consensus 153 ~~~~~~~~~~~v~~saT~~~~~~~~~~~~~ 182 (201)
T smart00487 153 LLKLLPKNVQLLLLSATPPEEIENLLELFL 182 (201)
T ss_pred HHHhCCccceEEEEecCCchhHHHHHHHhc
Confidence 333346688999999999875544444433
No 221
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.56 E-value=9.9e-14 Score=154.24 Aligned_cols=166 Identities=27% Similarity=0.351 Sum_probs=122.2
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000324 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1665)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (1665)
++.+++++|.+++..++....++++++|||+|||.++..++++.+.... ..+++|++|+++++.|+...+.
T Consensus 5 ~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~---------~~~~l~~~p~~~~~~~~~~~~~ 75 (201)
T smart00487 5 GFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK---------GKRVLVLVPTRELAEQWAEELK 75 (201)
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC---------CCcEEEEeCCHHHHHHHHHHHH
Confidence 4678999999999998876467999999999999999999988876531 3479999999999999999999
Q ss_pred HhhccCC-cEEEEEECCCcccH--hhhccc-cEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc-CCchHHHHH
Q 000324 572 NRLQMYD-VKVRELSGDQTLTR--QQIEET-QIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESI 646 (1665)
Q Consensus 572 ~~~~~~g-i~V~~ltGd~~~~~--~~~~~~-~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~i 646 (1665)
..+.... ..+..+.|...... ...... +|+++|++.+........ .....++++|+||+|.+.. .+...+..+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~--~~~~~~~~iIiDE~h~~~~~~~~~~~~~~ 153 (201)
T smart00487 76 KLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL--LELSNVDLVILDEAHRLLDGGFGDQLEKL 153 (201)
T ss_pred HHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC--cCHhHCCEEEEECHHHHhcCCcHHHHHHH
Confidence 8776544 44444444432111 112233 999999998755555443 3456789999999999986 555554444
Q ss_pred HHHHHHHHhhccCCeeEEEEcccCCChHH
Q 000324 647 VARTVRQIETTKEHIRLVGLSATLPNYED 675 (1665)
Q Consensus 647 v~r~~~~~~~~~~~~riV~lSATl~n~~d 675 (1665)
+.. .....+++++|||+++..+
T Consensus 154 ~~~-------~~~~~~~v~~saT~~~~~~ 175 (201)
T smart00487 154 LKL-------LPKNVQLLLLSATPPEEIE 175 (201)
T ss_pred HHh-------CCccceEEEEecCCchhHH
Confidence 432 2567899999999875433
No 222
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.55 E-value=2.9e-13 Score=173.29 Aligned_cols=129 Identities=18% Similarity=0.151 Sum_probs=95.9
Q ss_pred CCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcE
Q 000324 1342 FNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMR 1421 (1665)
Q Consensus 1342 ~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~ 1421 (1665)
++|+-.|.+-.+.-... -++.|+||+|||++|.+|++..... +. .+++++||++||.|.++.+. .+...+|++
T Consensus 81 ~~~ydvQliGg~~Lh~G-~Iaem~TGeGKTL~a~Lpa~~~al~---G~--~V~VvTpn~yLA~qd~e~m~-~l~~~lGLt 153 (896)
T PRK13104 81 LRHFDVQLIGGMVLHEG-NIAEMRTGEGKTLVATLPAYLNAIS---GR--GVHIVTVNDYLAKRDSQWMK-PIYEFLGLT 153 (896)
T ss_pred CCcchHHHhhhhhhccC-ccccccCCCCchHHHHHHHHHHHhc---CC--CEEEEcCCHHHHHHHHHHHH-HHhcccCce
Confidence 44444444544322222 5899999999999999999977654 22 68999999999999998777 667778999
Q ss_pred EEEEeCCCccchh-ccCCCcEEEEChhhH-HHHHHhhhcc----ccCCCccEEEeecccccC
Q 000324 1422 VVELTGETAMDLK-LLEKGQIIISTPEKW-DALSRRWKQR----KYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1422 v~~l~G~~~~~~~-~l~~~~IIV~TPe~l-~~l~r~~~~~----~~l~~v~llViDEaH~l~ 1477 (1665)
|+.++|+.+...+ ....+||+++||+++ .++++..... .....+.++||||||.++
T Consensus 154 v~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 154 VGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred EEEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhh
Confidence 9999999776533 334689999999998 6666642110 122589999999999764
No 223
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.55 E-value=8.4e-13 Score=171.54 Aligned_cols=113 Identities=18% Similarity=0.272 Sum_probs=95.2
Q ss_pred CCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHH
Q 000324 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (1665)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~ 811 (1665)
.+.++||||+|++.++.++..|.+.+. .+.++||+++..+|..
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~gi-------------------------------------~~~~~h~~~~~~~R~~ 487 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELGI-------------------------------------KVRYLHSDIDTLERVE 487 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcce-------------------------------------eEEEEECCCCHHHHHH
Confidence 367999999999999999999877542 3567799999999999
Q ss_pred HHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCC
Q 000324 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889 (1665)
Q Consensus 812 v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~ 889 (1665)
+++.|+.|.+.|||||+.+++|+|+|++.+||. +|.+..+ -+-+..+|+||+||+||. ..|.++++++..
T Consensus 488 ~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii----~d~eifG-~~~~~~~yiqr~GR~gR~---~~G~~i~~~~~~ 557 (652)
T PRK05298 488 IIRDLRLGEFDVLVGINLLREGLDIPEVSLVAI----LDADKEG-FLRSERSLIQTIGRAARN---VNGKVILYADKI 557 (652)
T ss_pred HHHHHHcCCceEEEEeCHHhCCccccCCcEEEE----eCCcccc-cCCCHHHHHHHhccccCC---CCCEEEEEecCC
Confidence 999999999999999999999999999998887 4432111 012788999999999994 579999999854
No 224
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.54 E-value=8.2e-13 Score=168.87 Aligned_cols=109 Identities=19% Similarity=0.208 Sum_probs=89.4
Q ss_pred hCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHH
Q 000324 731 AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ 810 (1665)
Q Consensus 731 ~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~ 810 (1665)
..+.|+||||+|+..++.++..|...+... .++|+ .+.+|+
T Consensus 596 ~~grpVLIft~Sve~sE~Ls~~L~~~gI~h-------------------------------------~vLna--kq~~RE 636 (1025)
T PRK12900 596 KKGQPVLVGTASVEVSETLSRMLRAKRIAH-------------------------------------NVLNA--KQHDRE 636 (1025)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHcCCCc-------------------------------------eeecC--CHHHhH
Confidence 347899999999999999999998876432 34476 578999
Q ss_pred HHHHHHhCCCCCeEEeccccccccCCC---ceE-----EEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEE
Q 000324 811 LVEDLFGDGHVQVLVSTATLAWGVNLP---AHT-----VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 882 (1665)
Q Consensus 811 ~v~~~F~~g~i~VLVaT~tla~GVdlP---~v~-----vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~ 882 (1665)
..+..|+.+...|+|||+.++||+|++ .+. +||. +..+. |...|.|+.|||||.| .+|.+
T Consensus 637 a~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIg----terhe------s~Rid~Ql~GRtGRqG--dpGsS 704 (1025)
T PRK12900 637 AEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILG----SERHE------SRRIDRQLRGRAGRQG--DPGES 704 (1025)
T ss_pred HHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeC----CCCCc------hHHHHHHHhhhhhcCC--CCcce
Confidence 999999999999999999999999999 442 3354 33333 6778999999999988 89999
Q ss_pred EEEeCCCc
Q 000324 883 IIITGHSE 890 (1665)
Q Consensus 883 iil~~~~~ 890 (1665)
+.+++.++
T Consensus 705 ~ffvSleD 712 (1025)
T PRK12900 705 VFYVSLED 712 (1025)
T ss_pred EEEechhH
Confidence 99988754
No 225
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.52 E-value=1.2e-12 Score=164.35 Aligned_cols=281 Identities=21% Similarity=0.252 Sum_probs=174.0
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000324 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1665)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (1665)
|+ .|...|+-....++.+ ++.-+.||||.|||+-.++..+-...+ +.+++||+||..|+.|.++++.
T Consensus 80 G~-~~ws~QR~WakR~~rg-~SFaiiAPTGvGKTTfg~~~sl~~a~k-----------gkr~yii~PT~~Lv~Q~~~kl~ 146 (1187)
T COG1110 80 GF-RPWSAQRVWAKRLVRG-KSFAIIAPTGVGKTTFGLLMSLYLAKK-----------GKRVYIIVPTTTLVRQVYERLK 146 (1187)
T ss_pred CC-CchHHHHHHHHHHHcC-CceEEEcCCCCchhHHHHHHHHHHHhc-----------CCeEEEEecCHHHHHHHHHHHH
Confidence 44 8999999999998876 559999999999998665555443322 4589999999999999999999
Q ss_pred HhhccCC-cEEEE-EECCCcccHh-----h--hccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc-CC--
Q 000324 572 NRLQMYD-VKVRE-LSGDQTLTRQ-----Q--IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NR-- 639 (1665)
Q Consensus 572 ~~~~~~g-i~V~~-ltGd~~~~~~-----~--~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~r-- 639 (1665)
++....| ..+.. ++|..+.... . ..+.+|+|+|.. .+.++...... -++++|++|.+|.+.- .+
T Consensus 147 ~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~---FL~k~~e~L~~-~kFdfifVDDVDA~LkaskNv 222 (1187)
T COG1110 147 KFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ---FLSKRFEELSK-LKFDFIFVDDVDAILKASKNV 222 (1187)
T ss_pred HHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH---HHHhhHHHhcc-cCCCEEEEccHHHHHhccccH
Confidence 8775444 33333 5665443321 1 236899999987 34333321111 2579999999997642 11
Q ss_pred ----------chHHHHH--HHHHHHHHh---------------------hccCCeeEEEEcccCCChH----HHHHHHhc
Q 000324 640 ----------GPVLESI--VARTVRQIE---------------------TTKEHIRLVGLSATLPNYE----DVALFLRV 682 (1665)
Q Consensus 640 ----------g~~le~i--v~r~~~~~~---------------------~~~~~~riV~lSATl~n~~----dv~~~l~~ 682 (1665)
..+++.. +.++.+... ...+..++|..|||..... -+...|+.
T Consensus 223 DriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgF 302 (1187)
T COG1110 223 DRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGF 302 (1187)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCC
Confidence 1111110 011111110 1234568899999986532 33344443
Q ss_pred cccCceEEecCCCccccceEEEEeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEecC---hhHHHHHHHHHHHHhhh
Q 000324 683 NLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHS---RKETAKTARAIRDTALE 759 (1665)
Q Consensus 683 ~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~s---r~~~~~~a~~L~~~~~~ 759 (1665)
... ....-+...+-.+.......+ +.+ +.+.. +.-.||||+. +..++.++..|+..+.+
T Consensus 303 evG---------~~~~~LRNIvD~y~~~~~~e~-------~~e-lvk~l-G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~ 364 (1187)
T COG1110 303 EVG---------SGGEGLRNIVDIYVESESLEK-------VVE-LVKKL-GDGGLIFVPIDYGREKAEELAEYLRSHGIN 364 (1187)
T ss_pred ccC---------ccchhhhheeeeeccCccHHH-------HHH-HHHHh-CCCeEEEEEcHHhHHHHHHHHHHHHhcCce
Confidence 322 211222211111111111111 111 22223 4578999999 88888899988887654
Q ss_pred ccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEecc----ccccccC
Q 000324 760 NDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTA----TLAWGVN 835 (1665)
Q Consensus 760 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~----tla~GVd 835 (1665)
. ...|++ +...++.|..|+++|||..+ ++.||+|
T Consensus 365 a-------------------------------------~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlD 402 (1187)
T COG1110 365 A-------------------------------------ELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLD 402 (1187)
T ss_pred E-------------------------------------EEeecc-----chhhhhhhccCceeEEEEecccccceeecCC
Confidence 3 333652 36788999999999999874 7999999
Q ss_pred CCc-eEEEEecccccCCCC
Q 000324 836 LPA-HTVIIKGTQIYNPEK 853 (1665)
Q Consensus 836 lP~-v~vVI~~t~~yd~~~ 853 (1665)
+|. +.++|- |..|+
T Consensus 403 LP~rirYaIF----~GvPk 417 (1187)
T COG1110 403 LPHRIRYAVF----YGVPK 417 (1187)
T ss_pred chhheeEEEE----ecCCc
Confidence 997 455554 77775
No 226
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.52 E-value=7.3e-14 Score=178.00 Aligned_cols=143 Identities=15% Similarity=0.181 Sum_probs=114.3
Q ss_pred ccchhHHHHHh------cCCCCC---CHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEE
Q 000324 1326 ALRNPLYEALY------QGFKHF---NPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI 1396 (1665)
Q Consensus 1326 ~L~~~~~~~l~------~~f~~~---~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I 1396 (1665)
++..+....+. .||..| +|+|.|+++.+..+.+ +++.|+||+|||++|.+|++..+.. +. .+++|
T Consensus 68 al~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~g-vIAeaqTGeGKTLAf~LP~l~~aL~---g~--~v~IV 141 (970)
T PRK12899 68 GVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKG-FITEMQTGEGKTLTAVMPLYLNALT---GK--PVHLV 141 (970)
T ss_pred CCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCC-eEEEeCCCCChHHHHHHHHHHHHhh---cC--CeEEE
Confidence 34444555544 278888 9999999999998777 9999999999999999999987765 22 48899
Q ss_pred cccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchhc-cCCCcEEEEChhhH-HHHHHhhhccccC-------CCccE
Q 000324 1397 APLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKL-LEKGQIIISTPEKW-DALSRRWKQRKYV-------QQVSL 1467 (1665)
Q Consensus 1397 ~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~-l~~~~IIV~TPe~l-~~l~r~~~~~~~l-------~~v~l 1467 (1665)
+||++||.|..+.+. .+...+|++++.+.|+.+...+. .-.+||+||||+++ .++++.. ...+ ..+.+
T Consensus 142 TpTrELA~Qdae~m~-~L~k~lGLsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~--~~~~~~~~~vqr~~~~ 218 (970)
T PRK12899 142 TVNDYLAQRDCEWVG-SVLRWLGLTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDN--SIATRKEEQVGRGFYF 218 (970)
T ss_pred eCCHHHHHHHHHHHH-HHHhhcCCeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCC--CCCcCHHHhhcccccE
Confidence 999999999999887 67777899999999998876431 22689999999999 8887752 1222 35689
Q ss_pred EEeecccccC
Q 000324 1468 FIIDELHLIG 1477 (1665)
Q Consensus 1468 lViDEaH~l~ 1477 (1665)
+||||||.|+
T Consensus 219 ~IIDEADsmL 228 (970)
T PRK12899 219 AIIDEVDSIL 228 (970)
T ss_pred EEEechhhhh
Confidence 9999999775
No 227
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.50 E-value=5.3e-12 Score=157.57 Aligned_cols=127 Identities=13% Similarity=0.071 Sum_probs=100.0
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (1665)
.++++|--..-.++.+ -|....||+|||+++.+|++..... +..+.+++|+--||.+-++.+...+
T Consensus 78 r~ydvQlig~l~Ll~G---~VaEM~TGEGKTLvA~l~a~l~AL~-----------G~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 78 RPFDVQLLGALRLLAG---DVIEMATGEGKTLAGAIAAAGYALQ-----------GRRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred CcchHHHHHHHHHhCC---CcccccCCCCHHHHHHHHHHHHHHc-----------CCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 5678888887776654 3778999999999999998877654 3468899999999999999999999
Q ss_pred ccCCcEEEEEECCCcccH-hhhccccEEEeChhhH--HHHHhhcC---CCccccceeEEEEeccccc
Q 000324 575 QMYDVKVRELSGDQTLTR-QQIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (1665)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~-~~~~~~~IiV~TPekl--d~l~r~~~---~~~~l~~v~liIiDEaH~l 635 (1665)
..+|++|+.++++.+... +..-.++|+++|..-+ |.|..+.. +......+.+.||||||.+
T Consensus 144 ~~LGLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSi 210 (764)
T PRK12326 144 EALGLTVGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSV 210 (764)
T ss_pred HhcCCEEEEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhh
Confidence 999999999999876543 3445899999999874 55544431 1223455789999999966
No 228
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.46 E-value=2.7e-12 Score=164.60 Aligned_cols=128 Identities=17% Similarity=0.102 Sum_probs=94.1
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000324 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i 1420 (1665)
.|+++|--.--.+ +.+ -+..++||+|||++|.+|++-.... +. .+-+++||..||.|.++.+. .+...+|+
T Consensus 81 ~~~dvQlig~l~L-~~G--~Iaem~TGeGKTLva~lpa~l~aL~---G~--~V~IvTpn~yLA~rd~e~~~-~l~~~LGl 151 (830)
T PRK12904 81 RHFDVQLIGGMVL-HEG--KIAEMKTGEGKTLVATLPAYLNALT---GK--GVHVVTVNDYLAKRDAEWMG-PLYEFLGL 151 (830)
T ss_pred CCCccHHHhhHHh-cCC--chhhhhcCCCcHHHHHHHHHHHHHc---CC--CEEEEecCHHHHHHHHHHHH-HHHhhcCC
Confidence 4455554444333 322 4899999999999999999633333 22 46699999999999999887 66677899
Q ss_pred EEEEEeCCCccchh-ccCCCcEEEEChhhH-HHHHHhhhc----cccCCCccEEEeecccccC
Q 000324 1421 RVVELTGETAMDLK-LLEKGQIIISTPEKW-DALSRRWKQ----RKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1421 ~v~~l~G~~~~~~~-~l~~~~IIV~TPe~l-~~l~r~~~~----~~~l~~v~llViDEaH~l~ 1477 (1665)
+|+.++|+.+...+ ..-.++|+++||+++ .++++.... ....+.+.++||||||.++
T Consensus 152 sv~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 152 SVGVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL 214 (830)
T ss_pred eEEEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhe
Confidence 99999998776633 234589999999999 667764221 1235679999999999764
No 229
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.45 E-value=1.1e-11 Score=146.15 Aligned_cols=170 Identities=20% Similarity=0.259 Sum_probs=119.1
Q ss_pred CeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHHHHHHHHHHHHH-HhCCCeEEE
Q 000324 660 HIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLI 738 (1665)
Q Consensus 660 ~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~vLV 738 (1665)
..|+|..|||..+++ +..- . -..+..-.||.-|-.-.+.+.... .+... ++..+.. ...+.++||
T Consensus 386 ~~q~i~VSATPg~~E-~e~s------~-~~vveQiIRPTGLlDP~ievRp~~--~QvdD----L~~EI~~r~~~~eRvLV 451 (663)
T COG0556 386 IPQTIYVSATPGDYE-LEQS------G-GNVVEQIIRPTGLLDPEIEVRPTK--GQVDD----LLSEIRKRVAKNERVLV 451 (663)
T ss_pred cCCEEEEECCCChHH-HHhc------c-CceeEEeecCCCCCCCceeeecCC--CcHHH----HHHHHHHHHhcCCeEEE
Confidence 568999999976543 2111 1 012233445544433222222221 12222 2223333 334679999
Q ss_pred EecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhC
Q 000324 739 FVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGD 818 (1665)
Q Consensus 739 Fv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~ 818 (1665)
-+-|++-++.+..+|.+.+.. +.+.|+.+..-+|..++...+.
T Consensus 452 TtLTKkmAEdLT~Yl~e~gik-------------------------------------v~YlHSdidTlER~eIirdLR~ 494 (663)
T COG0556 452 TTLTKKMAEDLTEYLKELGIK-------------------------------------VRYLHSDIDTLERVEIIRDLRL 494 (663)
T ss_pred EeehHHHHHHHHHHHHhcCce-------------------------------------EEeeeccchHHHHHHHHHHHhc
Confidence 999999999999999887643 6788999999999999999999
Q ss_pred CCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCC
Q 000324 819 GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (1665)
Q Consensus 819 g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (1665)
|.++|||.-+.|-.|+|+|.|..|.- .|..+.++ --|-.+++|-+|||.|. ..|.+|++...
T Consensus 495 G~~DvLVGINLLREGLDiPEVsLVAI----lDADKeGF-LRse~SLIQtIGRAARN---~~GkvIlYAD~ 556 (663)
T COG0556 495 GEFDVLVGINLLREGLDLPEVSLVAI----LDADKEGF-LRSERSLIQTIGRAARN---VNGKVILYADK 556 (663)
T ss_pred CCccEEEeehhhhccCCCcceeEEEE----eecCcccc-ccccchHHHHHHHHhhc---cCCeEEEEchh
Confidence 99999999999999999999998865 55543222 12778899999999995 57888887654
No 230
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.45 E-value=2.3e-13 Score=157.42 Aligned_cols=365 Identities=18% Similarity=0.205 Sum_probs=210.7
Q ss_pred eeCCCCCccccCCCceEEecCCCCCCCCCCCC--CccccCCCChhhHhhcCCCCCCCHHHHHHHHHHHcCCC--cEEEEc
Q 000324 443 CDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNE--KLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSAD--NILLCA 518 (1665)
Q Consensus 443 ~~lp~g~~~~~~~~~eei~vp~~~~~~~~~~~--~l~~i~~Lp~~~~~~f~g~~~l~~iQ~~~i~~~l~~~~--nvlv~A 518 (1665)
+.+...+....+|.+-|+..|-..-..+..+. +-+.|. | +.-..++|+|.+++...+.++. +-||+.
T Consensus 257 fei~~e~vE~vkkRCieidyPlLeEYDFRND~~npdl~id-L--------KPst~iRpYQEksL~KMFGNgRARSGiIVL 327 (776)
T KOG1123|consen 257 FEIKQESVETVKKRCIEIDYPLLEEYDFRNDNVNPDLDID-L--------KPSTQIRPYQEKSLSKMFGNGRARSGIIVL 327 (776)
T ss_pred eeecHHHHHHHHHhhhccCchhhhhhccccCCCCCCCCcC-c--------CcccccCchHHHHHHHHhCCCcccCceEEE
Confidence 34444444445566666666654433332211 111221 1 2245789999999999987643 678889
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhhhccc
Q 000324 519 PTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEET 598 (1665)
Q Consensus 519 PTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~~~~~ 598 (1665)
|.|+|||++..-++.. + +.++|+++..---+.|+...|..+..--.-.++.+|.|..-.. ..++
T Consensus 328 PCGAGKtLVGvTAa~t-i-------------kK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFTsd~Ke~~--~~~~ 391 (776)
T KOG1123|consen 328 PCGAGKTLVGVTAACT-I-------------KKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTSDAKERF--PSGA 391 (776)
T ss_pred ecCCCCceeeeeeeee-e-------------cccEEEEecCccCHHHHHHHHHhhcccCccceEEeeccccccC--CCCC
Confidence 9999999987655432 1 2368999998888999988888765444456888888765322 2578
Q ss_pred cEEEeChhhHHHHHhhcC------CCccccceeEEEEeccccccc-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCC
Q 000324 599 QIIVTTPEKWDIITRKSG------DRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671 (1665)
Q Consensus 599 ~IiV~TPekld~l~r~~~------~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~ 671 (1665)
.|+|+|..++..-.+++. +...-+..+++|+||+|.+.. .+.-++. .+ +.+++ +||+|||-
T Consensus 392 gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVls--------iv---~aHcK-LGLTATLv 459 (776)
T KOG1123|consen 392 GVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLS--------IV---QAHCK-LGLTATLV 459 (776)
T ss_pred cEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHH--------HH---HHHhh-ccceeEEe
Confidence 899999875422222211 111224578999999998754 2222222 11 22233 89999985
Q ss_pred ChH----H----------HHHHHhccccCceEEecCCCccccceEEEEeeecC-chhHH--HHHHHH----HHHHHHHHH
Q 000324 672 NYE----D----------VALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVK-KPLQR--FQLMND----LCYEKVVAV 730 (1665)
Q Consensus 672 n~~----d----------v~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~-~~~~~--~~~~~~----~~~~~i~~~ 730 (1665)
..+ | -++|+.......+-.+....--+|....|+.-... +..++ +..||. .|--.+.-+
T Consensus 460 REDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~H 539 (776)
T KOG1123|consen 460 REDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFH 539 (776)
T ss_pred eccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHH
Confidence 321 1 24555443222222222111112221111100000 00000 011211 111112222
Q ss_pred h-CCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHH
Q 000324 731 A-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDR 809 (1665)
Q Consensus 731 ~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR 809 (1665)
. .+.++|||..+.-.....|.. .|--+++|..++.+|
T Consensus 540 E~RgDKiIVFsDnvfALk~YAik------------------------------------------l~KpfIYG~Tsq~ER 577 (776)
T KOG1123|consen 540 ERRGDKIIVFSDNVFALKEYAIK------------------------------------------LGKPFIYGPTSQNER 577 (776)
T ss_pred HhcCCeEEEEeccHHHHHHHHHH------------------------------------------cCCceEECCCchhHH
Confidence 2 356888888765443333322 223456999999999
Q ss_pred HHHHHHHhC-CCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCC--CC--ceEEEE
Q 000324 810 QLVEDLFGD-GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY--DS--YGEGII 884 (1665)
Q Consensus 810 ~~v~~~F~~-g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~--d~--~G~~ii 884 (1665)
..+++.|+- ..++.++-..+...++|+|..+|+|.-...|. |..+=.||.||.-|+.. |. ...-|.
T Consensus 578 m~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~G---------SRRQEAQRLGRILRAKk~~de~fnafFYS 648 (776)
T KOG1123|consen 578 MKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGG---------SRRQEAQRLGRILRAKKRNDEEFNAFFYS 648 (776)
T ss_pred HHHHHhcccCCccceEEEeeccCccccCCcccEEEEEccccc---------chHHHHHHHHHHHHHhhcCccccceeeee
Confidence 999999985 56888899999999999999999998555444 55678899998777532 11 234455
Q ss_pred EeCCCcHHHHH
Q 000324 885 ITGHSELRYYL 895 (1665)
Q Consensus 885 l~~~~~~~~y~ 895 (1665)
+++.+..+.|-
T Consensus 649 LVS~DTqEM~Y 659 (776)
T KOG1123|consen 649 LVSKDTQEMYY 659 (776)
T ss_pred eeecchHHHHh
Confidence 66666655444
No 231
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.45 E-value=1.6e-12 Score=166.88 Aligned_cols=330 Identities=15% Similarity=0.053 Sum_probs=191.4
Q ss_pred ccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhh---
Q 000324 518 APTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ--- 594 (1665)
Q Consensus 518 APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~--- 594 (1665)
+.+|||||.+|+-.+-..+.. +..+|+++|..+|+.|+.++|+++|+ +..|..++++.+...+.
T Consensus 167 ~~~GSGKTevyl~~i~~~l~~-----------Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w 233 (665)
T PRK14873 167 ALPGEDWARRLAAAAAATLRA-----------GRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRW 233 (665)
T ss_pred cCCCCcHHHHHHHHHHHHHHc-----------CCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHH
Confidence 335999999998888877765 33699999999999999999999885 25688899887655432
Q ss_pred ----hccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccc--cCCchHHHHHHHHHHHHHhhccCCeeEEEEcc
Q 000324 595 ----IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH--DNRGPVLESIVARTVRQIETTKEHIRLVGLSA 668 (1665)
Q Consensus 595 ----~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~--d~rg~~le~iv~r~~~~~~~~~~~~riV~lSA 668 (1665)
..+.+|+|+|- +.-...+.++++|||||=|--. ++++|.+.. |-.........++.+|+-||
T Consensus 234 ~~~~~G~~~IViGtR---------SAvFaP~~~LgLIIvdEEhd~sykq~~~p~yha---RdvA~~Ra~~~~~~lvLgSa 301 (665)
T PRK14873 234 LAVLRGQARVVVGTR---------SAVFAPVEDLGLVAIWDDGDDLLAEPRAPYPHA---REVALLRAHQHGCALLIGGH 301 (665)
T ss_pred HHHhCCCCcEEEEcc---------eeEEeccCCCCEEEEEcCCchhhcCCCCCCccH---HHHHHHHHHHcCCcEEEECC
Confidence 24678999993 3334567889999999999542 245555432 11111122356889999999
Q ss_pred cCCChHHHHHHHhccccCceEEecCC---CccccceEEEEeeecC----chhHHHHHHHHHHHHHHHHHhCCCeEEEEec
Q 000324 669 TLPNYEDVALFLRVNLEKGLFYFDNS---YRPVPLSQQYIGIQVK----KPLQRFQLMNDLCYEKVVAVAGKHQVLIFVH 741 (1665)
Q Consensus 669 Tl~n~~dv~~~l~~~~~~~~~~f~~~---~rpv~l~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~ 741 (1665)
|. ..+ .|..+.... ....... .+...-..++++.... +....-..+...+++.+.+....+|+|||+|
T Consensus 302 TP-Sle---s~~~~~~g~-~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~gqvll~ln 376 (665)
T PRK14873 302 AR-TAE---AQALVESGW-AHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHGPVLVQVP 376 (665)
T ss_pred CC-CHH---HHHHHhcCc-ceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcCcEEEEec
Confidence 94 333 333332111 1111111 0110111223322110 0000000134455666666666559999999
Q ss_pred ChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhh---------ccc--------------cchhhhhcCCcEE
Q 000324 742 SRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTD---------MVK--------------SNDLKDLLPYGFA 798 (1665)
Q Consensus 742 sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~---------~~~--------------~~~l~~ll~~gv~ 798 (1665)
.|..+-.+...=+.....+......+..+.......+..+. .|. .+.|+.+++
T Consensus 377 RrGyap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP---- 452 (665)
T PRK14873 377 RRGYVPSLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFP---- 452 (665)
T ss_pred CCCCCCeeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCC----
Confidence 99877665555444444444333333322111111122221 111 122333333
Q ss_pred EecCCCCHHHHHHHHHHHhCCCCCeEEecc----ccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCC
Q 000324 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTA----TLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRP 874 (1665)
Q Consensus 799 ~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~----tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~ 874 (1665)
....-+.|++.+++.|. ++.+|||+|. .++ | ++ ...+|++.+...+.+..+-.+-...-++|-+|||||.
T Consensus 453 --~~~V~r~d~d~~l~~~~-~~~~IlVGTqgaepm~~-g-~~-~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~ 526 (665)
T PRK14873 453 --GVPVVTSGGDQVVDTVD-AGPALVVATPGAEPRVE-G-GY-GAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPR 526 (665)
T ss_pred --CCCEEEEChHHHHHhhc-cCCCEEEECCCCccccc-C-Cc-eEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCC
Confidence 11222345566888997 5899999998 666 3 22 2334555544444444444555678889999999996
Q ss_pred CCCCceEEEEEeCCC
Q 000324 875 QYDSYGEGIIITGHS 889 (1665)
Q Consensus 875 g~d~~G~~iil~~~~ 889 (1665)
. ..|+++|.+.++
T Consensus 527 ~--~~G~V~iq~~p~ 539 (665)
T PRK14873 527 A--DGGQVVVVAESS 539 (665)
T ss_pred C--CCCEEEEEeCCC
Confidence 4 779999886433
No 232
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.43 E-value=2.4e-11 Score=155.38 Aligned_cols=127 Identities=17% Similarity=0.149 Sum_probs=96.6
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (1665)
.++++|--.--. ++.+ -|.-..||+|||+++.+|++-.... +..+.+++|+.-||.+-+..+...+
T Consensus 82 ~~ydVQliGg~~-Lh~G--~iaEM~TGEGKTLvA~l~a~l~al~-----------G~~VhvvT~ndyLA~RD~e~m~~l~ 147 (913)
T PRK13103 82 RHFDVQLIGGMT-LHEG--KIAEMRTGEGKTLVGTLAVYLNALS-----------GKGVHVVTVNDYLARRDANWMRPLY 147 (913)
T ss_pred CcchhHHHhhhH-hccC--ccccccCCCCChHHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 455666544333 3332 5888999999999999999876554 3468899999999999999999999
Q ss_pred ccCCcEEEEEECCCcccH-hhhccccEEEeChhhH--HHHHhhcC---CCccccceeEEEEeccccc
Q 000324 575 QMYDVKVRELSGDQTLTR-QQIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (1665)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~-~~~~~~~IiV~TPekl--d~l~r~~~---~~~~l~~v~liIiDEaH~l 635 (1665)
..+|++|+.++|+.+... +..-.++|+++|..-+ |.|..+.. .......+.++||||+|.+
T Consensus 148 ~~lGl~v~~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsi 214 (913)
T PRK13103 148 EFLGLSVGIVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSI 214 (913)
T ss_pred cccCCEEEEECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhhe
Confidence 999999999999876543 3445799999999874 55544421 1233467899999999976
No 233
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.39 E-value=4.5e-12 Score=132.36 Aligned_cols=141 Identities=29% Similarity=0.368 Sum_probs=102.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEECCCccc
Q 000324 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLT 591 (1665)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~ 591 (1665)
+++++++|||+|||.+++..+.+....+ ...+++|++|+++++.++...+...... ++.+..+.+.....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~---------~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 70 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL---------KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIK 70 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc---------cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchh
Confidence 3689999999999999998888876542 2348999999999999999999887765 67888888876554
Q ss_pred Hhh---hccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEcc
Q 000324 592 RQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSA 668 (1665)
Q Consensus 592 ~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSA 668 (1665)
... ....+|+++|++.+........ ......+++|+||+|.+......... ...........+++++||
T Consensus 71 ~~~~~~~~~~~i~i~t~~~~~~~~~~~~--~~~~~~~~iiiDE~h~~~~~~~~~~~------~~~~~~~~~~~~~i~~sa 142 (144)
T cd00046 71 QQEKLLSGKTDIVVGTPGRLLDELERLK--LSLKKLDLLILDEAHRLLNQGFGLLG------LKILLKLPKDRQVLLLSA 142 (144)
T ss_pred HHHHHhcCCCCEEEECcHHHHHHHHcCC--cchhcCCEEEEeCHHHHhhcchHHHH------HHHHhhCCccceEEEEec
Confidence 432 4689999999998643333322 23456889999999998753211110 111122467789999999
Q ss_pred cC
Q 000324 669 TL 670 (1665)
Q Consensus 669 Tl 670 (1665)
|+
T Consensus 143 Tp 144 (144)
T cd00046 143 TP 144 (144)
T ss_pred cC
Confidence 94
No 234
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.37 E-value=2.6e-12 Score=157.54 Aligned_cols=421 Identities=17% Similarity=0.128 Sum_probs=247.7
Q ss_pred HHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEE
Q 000324 504 YKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRE 583 (1665)
Q Consensus 504 i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V~~ 583 (1665)
+-.+...++.+++-+.||+|||..+...||..+..+... ..+.+++..|++..+..+++++..--. -.++.
T Consensus 386 i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g------~~~na~v~qprrisaisiaerva~er~---e~~g~ 456 (1282)
T KOG0921|consen 386 ILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNG------ASFNAVVSQPRRISAISLAERVANERG---EEVGE 456 (1282)
T ss_pred HHHHHhcCceeeEeecccccchhHHHHHHHHHHhhcccc------ccccceeccccccchHHHHHHHHHhhH---Hhhcc
Confidence 334566778899999999999999999999998875321 245688899999999999998875322 12222
Q ss_pred EECCCcccHh--hhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCe
Q 000324 584 LSGDQTLTRQ--QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHI 661 (1665)
Q Consensus 584 ltGd~~~~~~--~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~ 661 (1665)
..|-...-.. ....--|+.||-| .+.|... .-+..+.++|+||+|...- -+ .++..+.+-+..+.+.+
T Consensus 457 tvgy~vRf~Sa~prpyg~i~fctvg---vllr~~e--~glrg~sh~i~deiherdv-~~----dfll~~lr~m~~ty~dl 526 (1282)
T KOG0921|consen 457 TCGYNVRFDSATPRPYGSIMFCTVG---VLLRMME--NGLRGISHVIIDEIHERDV-DT----DFVLIVLREMISTYRDL 526 (1282)
T ss_pred cccccccccccccccccceeeeccc---hhhhhhh--hcccccccccchhhhhhcc-ch----HHHHHHHHhhhccchhh
Confidence 2221111111 1123458899998 5666554 3456789999999996532 12 22223333344567789
Q ss_pred eEEEEcccCCChHHHHHHHhccccCceEE------------------ecCCCccccceEEEEee----------------
Q 000324 662 RLVGLSATLPNYEDVALFLRVNLEKGLFY------------------FDNSYRPVPLSQQYIGI---------------- 707 (1665)
Q Consensus 662 riV~lSATl~n~~dv~~~l~~~~~~~~~~------------------f~~~~rpv~l~~~~~~~---------------- 707 (1665)
+++++|||+ |.+-+..|++..+...+.. |.+ -++.+....+...
T Consensus 527 ~v~lmsatI-dTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp-~~~~~~k~k~~~~~~~~~~ddK~~n~n~~ 604 (1282)
T KOG0921|consen 527 RVVLMSATI-DTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVP-SEPSQKKRKKDDDEEDEEVDDKGRNMNIL 604 (1282)
T ss_pred hhhhhhccc-chhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccC-CCcCccchhhcccccCchhhhcccccccc
Confidence 999999998 5566777776543211100 000 0111111111000
Q ss_pred ecCch-hHHHHHHHH--------HHHHHHHHHh----CCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhH
Q 000324 708 QVKKP-LQRFQLMND--------LCYEKVVAVA----GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSR 774 (1665)
Q Consensus 708 ~~~~~-~~~~~~~~~--------~~~~~i~~~~----~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~ 774 (1665)
..... .....+|.. -+.+++.... -.+-++||.+.-.....+..++......
T Consensus 605 ~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~f--------------- 669 (1282)
T KOG0921|consen 605 CDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEF--------------- 669 (1282)
T ss_pred cChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhh---------------
Confidence 00000 000001100 0111222111 1567899999988888887777654321
Q ss_pred HHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCC--C
Q 000324 775 EILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNP--E 852 (1665)
Q Consensus 775 ~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~--~ 852 (1665)
+++-.+.+...|+.+...++..|.+....|..+++++|.++...+.+-++..||.....|-. .
T Consensus 670 ---------------g~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~ 734 (1282)
T KOG0921|consen 670 ---------------GQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFT 734 (1282)
T ss_pred ---------------ccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeec
Confidence 12223455666999999999999999999999999999999999999998888875433321 1
Q ss_pred ------CCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcHHHHHHhhcCCCccccchhHhhHHHHHHHHHhcccc
Q 000324 853 ------KGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQ 926 (1665)
Q Consensus 853 ------~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~piES~l~~~l~d~lnaeI~~g~i~ 926 (1665)
.-..++.|.....||.||+||. +.|.|+.+|+.-..+.+..-... .+..+...|+.+-.
T Consensus 735 s~nn~~~~Atvw~sktn~eqr~gr~grv---R~G~~f~lcs~arF~~l~~~~t~----------em~r~plhemalTi-- 799 (1282)
T KOG0921|consen 735 SHNNMTHYATVWASKTNLEQRKGRAGRV---RPGFCFHLCSRARFEALEDHGTA----------EMFRTPLHEIALTI-- 799 (1282)
T ss_pred cccceeeeeeecccccchHhhcccCcee---cccccccccHHHHHHHHHhcCcH----------hhhcCccHHHHhhH--
Confidence 1134788999999999999996 68999999886555444332111 11111111111100
Q ss_pred ChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHHHHHHHHHHHhHcCCcccccCCCccccChHHHHHHHh
Q 000324 927 NAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYY 1006 (1665)
Q Consensus 927 ~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~ 1006 (1665)
.---...++++.. ..|.++..+.|..+-..|...++.+.++ .+|++|+..++.
T Consensus 800 --------kll~l~SI~~fl~--------------kal~~~p~dav~e~e~~l~~m~~ld~n~-----elt~lg~~la~l 852 (1282)
T KOG0921|consen 800 --------KLLRLGSIGEFLG--------------KALQPPPYDAVIEAEAVLREMGALDAND-----ELTPLGRMLARL 852 (1282)
T ss_pred --------HHHHhhhHHHHHh--------------hccCCCchhhccCchHHHHHhhhhhccC-----cccchhhhhhhc
Confidence 0000000111110 0111112233444445566666665543 789999999999
Q ss_pred cCCHHHHHHHH
Q 000324 1007 YISHGTISTYN 1017 (1665)
Q Consensus 1007 yi~~~t~~~~~ 1017 (1665)
+|.+...+++.
T Consensus 853 ~iep~~~k~~~ 863 (1282)
T KOG0921|consen 853 PIEPRIGKMMI 863 (1282)
T ss_pred cCcccccceee
Confidence 99998877765
No 235
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.36 E-value=2.4e-12 Score=141.80 Aligned_cols=151 Identities=23% Similarity=0.333 Sum_probs=100.5
Q ss_pred CCCHHHHHHHHHHHc------CCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q 000324 1341 HFNPIQTQVFTVLYN------TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKF 1414 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll~------~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~ 1414 (1665)
.|+|+|.+|+..+.+ ...++++.+|||||||.++...+.+... +++|++|+..|+.|..+.|. .+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~--------~~l~~~p~~~l~~Q~~~~~~-~~ 73 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR--------KVLIVAPNISLLEQWYDEFD-DF 73 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC--------EEEEEESSHHHHHHHHHHHH-HH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc--------ceeEecCHHHHHHHHHHHHH-Hh
Confidence 478999999999884 2567999999999999999865554333 79999999999999999996 44
Q ss_pred cCCCCcEEEEEe------------CCCccc---hhccCCCcEEEEChhhHHHHHHh---------hhccccCCCccEEEe
Q 000324 1415 GQGLGMRVVELT------------GETAMD---LKLLEKGQIIISTPEKWDALSRR---------WKQRKYVQQVSLFII 1470 (1665)
Q Consensus 1415 ~~~~~i~v~~l~------------G~~~~~---~~~l~~~~IIV~TPe~l~~l~r~---------~~~~~~l~~v~llVi 1470 (1665)
... ...+.... ...... .......+++++|..+|....+. ..........++||+
T Consensus 74 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~ 152 (184)
T PF04851_consen 74 GSE-KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVII 152 (184)
T ss_dssp STT-SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEE
T ss_pred hhh-hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEE
Confidence 432 11111100 000000 11334668999999999876553 112234557899999
Q ss_pred ecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCC
Q 000324 1471 DELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (1665)
Q Consensus 1471 DEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~ 1512 (1665)
||||++....+ +..++. .....+|+||||+.
T Consensus 153 DEaH~~~~~~~--~~~i~~---------~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 153 DEAHHYPSDSS--YREIIE---------FKAAFILGLTATPF 183 (184)
T ss_dssp ETGGCTHHHHH--HHHHHH---------SSCCEEEEEESS-S
T ss_pred ehhhhcCCHHH--HHHHHc---------CCCCeEEEEEeCcc
Confidence 99999964321 222222 45778999999985
No 236
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.36 E-value=1.1e-11 Score=129.30 Aligned_cols=140 Identities=31% Similarity=0.449 Sum_probs=102.5
Q ss_pred cEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchh---c
Q 000324 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK---L 1435 (1665)
Q Consensus 1359 nvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~---~ 1435 (1665)
++++.+|||+|||.++...+.+.+... ..+ +++|++|++.++.|....+...+.. +..+..+.+....... .
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~-~~~--~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 76 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSL-KGG--QVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLL 76 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcc-cCC--CEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHh
Confidence 589999999999999999988877652 233 8999999999999999988855442 5677777776554432 3
Q ss_pred cCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccC
Q 000324 1436 LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSL 1511 (1665)
Q Consensus 1436 l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl 1511 (1665)
....+|+++|++.+........ ......+++|+||+|.+......... + ..........+++++|||+
T Consensus 77 ~~~~~i~i~t~~~~~~~~~~~~--~~~~~~~~iiiDE~h~~~~~~~~~~~-----~-~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 77 SGKTDIVVGTPGRLLDELERLK--LSLKKLDLLILDEAHRLLNQGFGLLG-----L-KILLKLPKDRQVLLLSATP 144 (144)
T ss_pred cCCCCEEEECcHHHHHHHHcCC--cchhcCCEEEEeCHHHHhhcchHHHH-----H-HHHhhCCccceEEEEeccC
Confidence 5678999999999876665422 23557899999999999754311100 1 1112235688999999996
No 237
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.35 E-value=2.2e-11 Score=155.72 Aligned_cols=112 Identities=18% Similarity=0.116 Sum_probs=87.9
Q ss_pred EEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchhcc-CC
Q 000324 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLL-EK 1438 (1665)
Q Consensus 1360 vlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~l-~~ 1438 (1665)
-++.++||.|||++|.+|++.+... +. .+.||+|+..||.+..+.+. .+...+|++|.++.|+.+...+.- -.
T Consensus 98 ~IaEm~TGEGKTL~a~lp~~l~al~---g~--~VhIvT~ndyLA~RD~e~m~-~l~~~lGlsv~~i~~~~~~~~r~~~Y~ 171 (908)
T PRK13107 98 RIAEMRTGEGKTLTATLPAYLNALT---GK--GVHVITVNDYLARRDAENNR-PLFEFLGLTVGINVAGLGQQEKKAAYN 171 (908)
T ss_pred ccccccCCCCchHHHHHHHHHHHhc---CC--CEEEEeCCHHHHHHHHHHHH-HHHHhcCCeEEEecCCCCHHHHHhcCC
Confidence 5899999999999999999866655 22 59999999999999988776 566678999999999877654433 37
Q ss_pred CcEEEEChhhH-HHHHHhh-hc---cccCCCccEEEeecccccC
Q 000324 1439 GQIIISTPEKW-DALSRRW-KQ---RKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1439 ~~IIV~TPe~l-~~l~r~~-~~---~~~l~~v~llViDEaH~l~ 1477 (1665)
+||+++||+.+ .+++|.. .. ......+.++||||+|.++
T Consensus 172 ~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiL 215 (908)
T PRK13107 172 ADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSIL 215 (908)
T ss_pred CCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhc
Confidence 89999999998 6666642 11 1123678999999999765
No 238
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.34 E-value=8.3e-11 Score=155.50 Aligned_cols=160 Identities=17% Similarity=0.197 Sum_probs=102.9
Q ss_pred CCCCHHHHHHHHHHHc-CCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000324 1340 KHFNPIQTQVFTVLYN-TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll~-~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~ 1418 (1665)
..|.|+|..+...++. ...++|+.-..|-|||+-+.+.+-..+.. .... ++|||||. .|+.|+..++.++|.
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~-g~~~--rvLIVvP~-sL~~QW~~El~~kF~--- 223 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT-GRAE--RVLILVPE-TLQHQWLVEMLRRFN--- 223 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc-CCCC--cEEEEcCH-HHHHHHHHHHHHHhC---
Confidence 3699999999887654 23469999999999999997666555544 3334 89999997 899999999987875
Q ss_pred CcEEEEEeCCCccc-----hhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCC-chhHHHHHHHHH
Q 000324 1419 GMRVVELTGETAMD-----LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMR 1492 (1665)
Q Consensus 1419 ~i~v~~l~G~~~~~-----~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~-g~~~e~~~srl~ 1492 (1665)
+.+..+.++.... ...+...+++|+|.+.+..-.. +.....-...+++|+||||++.... .+.- ....+.
T Consensus 224 -l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~-~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~--~y~~v~ 299 (956)
T PRK04914 224 -LRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQ-RLEQALAAEWDLLVVDEAHHLVWSEEAPSR--EYQVVE 299 (956)
T ss_pred -CCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHH-HHHHHhhcCCCEEEEechhhhccCCCCcCH--HHHHHH
Confidence 3444444432111 1233456899999776543111 1111122468999999999996321 1111 122233
Q ss_pred HHHhhcCCCCeEEEEcccCCC
Q 000324 1493 YIASQVENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1493 ~i~~~~~~~~riI~lSATl~n 1513 (1665)
.+.. ....+++||||+..
T Consensus 300 ~La~---~~~~~LLLTATP~q 317 (956)
T PRK04914 300 QLAE---VIPGVLLLTATPEQ 317 (956)
T ss_pred HHhh---ccCCEEEEEcCccc
Confidence 3322 23467899999863
No 239
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.34 E-value=4.5e-10 Score=142.50 Aligned_cols=72 Identities=25% Similarity=0.278 Sum_probs=55.0
Q ss_pred HHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh-cc--CCcEEE
Q 000324 506 SALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL-QM--YDVKVR 582 (1665)
Q Consensus 506 ~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~-~~--~gi~V~ 582 (1665)
.++..+..+++.||||+|||++|++|++..+... .+.++||++||++|+.|+++.+.... +. ..+++.
T Consensus 11 ~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~---------~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~ 81 (636)
T TIGR03117 11 TSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER---------PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAG 81 (636)
T ss_pred HHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc---------cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEE
Confidence 3456677899999999999999999999876532 13589999999999999999887655 22 244555
Q ss_pred EEEC
Q 000324 583 ELSG 586 (1665)
Q Consensus 583 ~ltG 586 (1665)
.+.|
T Consensus 82 ~lkG 85 (636)
T TIGR03117 82 FFPG 85 (636)
T ss_pred EEEC
Confidence 4443
No 240
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.34 E-value=6.7e-12 Score=130.07 Aligned_cols=105 Identities=33% Similarity=0.509 Sum_probs=91.2
Q ss_pred CCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHH
Q 000324 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (1665)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~ 811 (1665)
.++++||||+++..++.+++.|.+. ..++.++||+++..+|..
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~-------------------------------------~~~~~~~~~~~~~~~~~~ 69 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKP-------------------------------------GIKVAALHGDGSQEEREE 69 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhc-------------------------------------CCcEEEEECCCCHHHHHH
Confidence 4679999999999999999888651 145889999999999999
Q ss_pred HHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEE
Q 000324 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885 (1665)
Q Consensus 812 v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil 885 (1665)
+.+.|.+|..+||+||.++++|+|+|...+||. ++++. +..+++|++||+||.| ..|.++++
T Consensus 70 ~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~----~~~~~------~~~~~~Q~~GR~~R~~--~~~~~~~~ 131 (131)
T cd00079 70 VLKDFREGEIVVLVATDVIARGIDLPNVSVVIN----YDLPW------SPSSYLQRIGRAGRAG--QKGTAILL 131 (131)
T ss_pred HHHHHHcCCCcEEEEcChhhcCcChhhCCEEEE----eCCCC------CHHHheecccccccCC--CCceEEeC
Confidence 999999999999999999999999999988887 55543 7889999999999998 47777653
No 241
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.33 E-value=3e-12 Score=120.11 Aligned_cols=73 Identities=36% Similarity=0.578 Sum_probs=67.8
Q ss_pred cCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccC
Q 000324 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (1665)
Q Consensus 793 l~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAG 872 (1665)
....+.++||+|+..+|..+++.|.+|..+|||||+++++|||+|++++||. |+++. +..+|.|++||+|
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~----~~~~~------~~~~~~Q~~GR~~ 75 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIF----YDPPW------SPEEYIQRIGRAG 75 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEE----SSSES------SHHHHHHHHTTSS
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccc----cccCC------CHHHHHHHhhcCC
Confidence 3467899999999999999999999999999999999999999999999999 77764 8899999999999
Q ss_pred CCC
Q 000324 873 RPQ 875 (1665)
Q Consensus 873 R~g 875 (1665)
|.|
T Consensus 76 R~g 78 (78)
T PF00271_consen 76 RIG 78 (78)
T ss_dssp TTT
T ss_pred CCC
Confidence 975
No 242
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.33 E-value=3.5e-11 Score=158.76 Aligned_cols=278 Identities=20% Similarity=0.199 Sum_probs=164.7
Q ss_pred CCC-CHHHHHHHHHHHc--CCC-cEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhc
Q 000324 1340 KHF-NPIQTQVFTVLYN--TDD-NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (1665)
Q Consensus 1340 ~~~-~~iQ~qa~~~ll~--~~d-nvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~ 1415 (1665)
.+. .+.|..++..+.. ... .+++.||||+|||.+++.+++..+... .....|++++.|++.++++++++++..++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-~~~~~r~i~vlP~~t~ie~~~~r~~~~~~ 271 (733)
T COG1203 193 EHEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-IKLKSRVIYVLPFRTIIEDMYRRAKEIFG 271 (733)
T ss_pred CchhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-ccccceEEEEccHHHHHHHHHHHHHhhhc
Confidence 344 8999999998875 233 689999999999999999988877762 11233999999999999999999996665
Q ss_pred CCCCcEEEE-EeCCCccchh-----------------ccCCCcEEEEChhhHHHHHHhhhccccC--CCccEEEeecccc
Q 000324 1416 QGLGMRVVE-LTGETAMDLK-----------------LLEKGQIIISTPEKWDALSRRWKQRKYV--QQVSLFIIDELHL 1475 (1665)
Q Consensus 1416 ~~~~i~v~~-l~G~~~~~~~-----------------~l~~~~IIV~TPe~l~~l~r~~~~~~~l--~~v~llViDEaH~ 1475 (1665)
.. + .... ++|....... ......++++||-++...+-.......+ -...++|+||+|.
T Consensus 272 ~~-~-~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~ 349 (733)
T COG1203 272 LF-S-VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHL 349 (733)
T ss_pred cc-c-cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHh
Confidence 42 1 1111 3343222100 1112256677777665532211111001 2357999999999
Q ss_pred cCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh--HHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhh
Q 000324 1476 IGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFE 1553 (1665)
Q Consensus 1476 l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~--~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~ 1553 (1665)
+.... ....++ .+..... ..+..+|++|||+|.. +.+...++.......+.. ..+..-+..+.........
T Consensus 350 ~~~~~--~~~~l~-~~i~~l~--~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~--~~~~~~e~~~~~~~~~~~~ 422 (733)
T COG1203 350 YADET--MLAALL-ALLEALA--EAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAK--FCPKEDEPGLKRKERVDVE 422 (733)
T ss_pred hcccc--hHHHHH-HHHHHHH--hCCCCEEEEecCCCHHHHHHHHHHHhcccceecccc--ccccccccccccccchhhh
Confidence 98663 222232 2322222 3478899999999984 344444444322222111 0000000000000000000
Q ss_pred HHHHhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhc
Q 000324 1554 ARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLR 1633 (1665)
Q Consensus 1554 ~~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~ 1633 (1665)
.... ......+......+++++|-|||++.|..++..|... -.
T Consensus 423 ~~~~---~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~----------------------------------~~ 465 (733)
T COG1203 423 DGPQ---EELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEK----------------------------------GP 465 (733)
T ss_pred hhhh---HhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhc----------------------------------CC
Confidence 0000 0112223344467889999999999999999887321 11
Q ss_pred ccEEEEcCCCCHHHHHHHHHHHh----cCCceEEEC
Q 000324 1634 HGVGYLHEGLNKTDQEVVSALFE----AGKIKICYR 1665 (1665)
Q Consensus 1634 ~gI~~~H~~m~~~dR~~v~~~F~----~G~i~VLVC 1665 (1665)
.+.++||.+...+|...++.++ .+.-.|+|+
T Consensus 466 -~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVa 500 (733)
T COG1203 466 -KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVA 500 (733)
T ss_pred -CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEE
Confidence 5899999999999999999654 456666664
No 243
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.33 E-value=8.5e-11 Score=147.94 Aligned_cols=265 Identities=20% Similarity=0.199 Sum_probs=163.3
Q ss_pred hHHHHHhcC--CCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHH
Q 000324 1330 PLYEALYQG--FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (1665)
Q Consensus 1330 ~~~~~l~~~--f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~ 1407 (1665)
+.++.+|.. ...|...|.-....++.|.. .-+.||||.|||.--++..+..-.+ +. +++||+||..|+.|++
T Consensus 69 e~~~~fF~k~~G~~~ws~QR~WakR~~rg~S-FaiiAPTGvGKTTfg~~~sl~~a~k---gk--r~yii~PT~~Lv~Q~~ 142 (1187)
T COG1110 69 EEFEEFFKKATGFRPWSAQRVWAKRLVRGKS-FAIIAPTGVGKTTFGLLMSLYLAKK---GK--RVYIIVPTTTLVRQVY 142 (1187)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHcCCc-eEEEcCCCCchhHHHHHHHHHHHhc---CC--eEEEEecCHHHHHHHH
Confidence 345666652 34899999999999998666 9999999999998766555433322 34 9999999999999999
Q ss_pred HHHHHHhcCCC---CcEEEEEeCCCccch-----hccCC--CcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccC
Q 000324 1408 RDWEIKFGQGL---GMRVVELTGETAMDL-----KLLEK--GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1408 ~~~~~~~~~~~---~i~v~~l~G~~~~~~-----~~l~~--~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~ 1477 (1665)
+++. .|+... ++.++ ++|..+... ..+++ .||+|+|..-+..-..... --+++++++|++|.++
T Consensus 143 ~kl~-~~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~----~~kFdfifVDDVDA~L 216 (1187)
T COG1110 143 ERLK-KFAEDAGSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELS----KLKFDFIFVDDVDAIL 216 (1187)
T ss_pred HHHH-HHHhhcCCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhc----ccCCCEEEEccHHHHH
Confidence 9999 666443 34444 777755542 24444 4899999765543322211 1368999999999775
Q ss_pred CCC----------c---hhH----HHHH-----------HHHHHHHh--------hcCCCCeEEEEcccCCChH----HH
Q 000324 1478 GQG----------G---PVL----EVIV-----------SRMRYIAS--------QVENKIRIVALSTSLANAK----DL 1517 (1665)
Q Consensus 1478 ~~~----------g---~~~----e~~~-----------srl~~i~~--------~~~~~~riI~lSATl~n~~----dl 1517 (1665)
..+ | ..+ +.+. .+++.+.. +-.+..++|..|||..... -+
T Consensus 217 kaskNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~Lf 296 (1187)
T COG1110 217 KASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLF 296 (1187)
T ss_pred hccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHH
Confidence 321 1 111 1110 11111111 1124578899999986532 23
Q ss_pred HHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcChhHHHHHHHHhcCCCCEEEEeCc---hHHHHHHHHHH
Q 000324 1518 GEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPS---RKYVRLTAVDL 1594 (1665)
Q Consensus 1518 ~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l~~~~~~IVFv~s---r~~a~~la~~L 1594 (1665)
.+.+ +|.+.....-+.-.+..+... ........+++.+ +...||||+. +..++.++..|
T Consensus 297 ReLl--------gFevG~~~~~LRNIvD~y~~~--------~~~e~~~elvk~l--G~GgLIfV~~d~G~e~aeel~e~L 358 (1187)
T COG1110 297 RELL--------GFEVGSGGEGLRNIVDIYVES--------ESLEKVVELVKKL--GDGGLIFVPIDYGREKAEELAEYL 358 (1187)
T ss_pred HHHh--------CCccCccchhhhheeeeeccC--------ccHHHHHHHHHHh--CCCeEEEEEcHHhHHHHHHHHHHH
Confidence 3333 344333222222111111111 1111222333442 3458999999 77777777666
Q ss_pred HHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEE
Q 000324 1595 MTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICY 1664 (1665)
Q Consensus 1595 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLV 1664 (1665)
+..+..+..+|++ +...++.|..|+++|||
T Consensus 359 -----------------------------------r~~Gi~a~~~~a~-----~~~~le~F~~GeidvLV 388 (1187)
T COG1110 359 -----------------------------------RSHGINAELIHAE-----KEEALEDFEEGEVDVLV 388 (1187)
T ss_pred -----------------------------------HhcCceEEEeecc-----chhhhhhhccCceeEEE
Confidence 3356678888873 37889999999999998
No 244
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.32 E-value=7.3e-12 Score=138.00 Aligned_cols=151 Identities=24% Similarity=0.297 Sum_probs=98.6
Q ss_pred CCCHHHHHHHHHHHc------CCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHH
Q 000324 495 QLNRVQSRVYKSALS------SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~------~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~ 568 (1665)
+|+++|.+++..+.. ...++++.||||||||.++...+.+... ++++++|++.|+.|+..
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~--------------~~l~~~p~~~l~~Q~~~ 68 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR--------------KVLIVAPNISLLEQWYD 68 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC--------------EEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc--------------ceeEecCHHHHHHHHHH
Confidence 579999999999874 2578999999999999999866665542 69999999999999999
Q ss_pred HHHHhhccCCcEEEEEE------------CCCcccH---hhhccccEEEeChhhHHHHHhhcC---------CCccccce
Q 000324 569 NLSNRLQMYDVKVRELS------------GDQTLTR---QQIEETQIIVTTPEKWDIITRKSG---------DRTYTQLV 624 (1665)
Q Consensus 569 ~~~~~~~~~gi~V~~lt------------Gd~~~~~---~~~~~~~IiV~TPekld~l~r~~~---------~~~~l~~v 624 (1665)
.|...... ...+.... ....... ......+++++|..+|....+... ........
T Consensus 69 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (184)
T PF04851_consen 69 EFDDFGSE-KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKF 147 (184)
T ss_dssp HHHHHSTT-SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSE
T ss_pred HHHHhhhh-hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccC
Confidence 99654332 11111110 0001111 113467899999999855544321 11234567
Q ss_pred eEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEcccCC
Q 000324 625 KLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671 (1665)
Q Consensus 625 ~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~ 671 (1665)
++||+||||......+ +..++. .....+|+||||++
T Consensus 148 ~~vI~DEaH~~~~~~~--~~~i~~---------~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 148 DLVIIDEAHHYPSDSS--YREIIE---------FKAAFILGLTATPF 183 (184)
T ss_dssp SEEEEETGGCTHHHHH--HHHHHH---------SSCCEEEEEESS-S
T ss_pred CEEEEehhhhcCCHHH--HHHHHc---------CCCCeEEEEEeCcc
Confidence 8999999998753211 222222 56778999999964
No 245
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.32 E-value=9.2e-11 Score=151.69 Aligned_cols=252 Identities=19% Similarity=0.215 Sum_probs=175.1
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchhcc
Q 000324 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLL 1436 (1665)
Q Consensus 1357 ~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~l 1436 (1665)
+.-++|++|||||||..--..++..-.. ..+ ++.+.-|.|--|..+.++..+.++...|-.|+.-.-- +...-
T Consensus 65 ~~vvii~getGsGKTTqlP~~lle~g~~--~~g--~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRf---e~~~s 137 (845)
T COG1643 65 NQVVIIVGETGSGKTTQLPQFLLEEGLG--IAG--KIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRF---ESKVS 137 (845)
T ss_pred CCEEEEeCCCCCChHHHHHHHHHhhhcc--cCC--eEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEe---eccCC
Confidence 5668999999999999866666554432 234 8999999999999999998888887666555432211 11122
Q ss_pred CCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCChHH
Q 000324 1437 EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKD 1516 (1665)
Q Consensus 1437 ~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~~d 1516 (1665)
....|-+.|.|.|...+.. ...+..++.||+||+|.=. -....++.-++.+....+.+.++|.+|||+ |++.
T Consensus 138 ~~Trik~mTdGiLlrei~~---D~~Ls~ys~vIiDEaHERS----l~tDilLgllk~~~~~rr~DLKiIimSATl-d~~r 209 (845)
T COG1643 138 PRTRIKVMTDGILLREIQN---DPLLSGYSVVIIDEAHERS----LNTDILLGLLKDLLARRRDDLKLIIMSATL-DAER 209 (845)
T ss_pred CCceeEEeccHHHHHHHhh---CcccccCCEEEEcchhhhh----HHHHHHHHHHHHHHhhcCCCceEEEEeccc-CHHH
Confidence 4568999999998876653 4568999999999999321 112236666777777777789999999998 7888
Q ss_pred HHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcChhHHHHHHHHh-cCCCCEEEEeCchHHHHHHHHHHH
Q 000324 1517 LGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHA-KNEKPALVFVPSRKYVRLTAVDLM 1595 (1665)
Q Consensus 1517 l~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l-~~~~~~IVFv~sr~~a~~la~~L~ 1595 (1665)
++++++..+ ++. ...|..|++++...-...++. +.......+..++ ...+.+|||.+..+..+.++..|.
T Consensus 210 fs~~f~~ap--vi~--i~GR~fPVei~Y~~~~~~d~~-----l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~ 280 (845)
T COG1643 210 FSAYFGNAP--VIE--IEGRTYPVEIRYLPEAEADYI-----LLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLE 280 (845)
T ss_pred HHHHcCCCC--EEE--ecCCccceEEEecCCCCcchh-----HHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHH
Confidence 999998532 333 344667777776333222221 1111222232332 235669999999999999998885
Q ss_pred H-hcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEE
Q 000324 1596 T-YSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICY 1664 (1665)
Q Consensus 1596 ~-~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLV 1664 (1665)
. .+. -..-|..+||.|+.++...|++---.|+-+|++
T Consensus 281 ~~~l~--------------------------------~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVl 318 (845)
T COG1643 281 KAELG--------------------------------DDLEILPLYGALSAEEQVRVFEPAPGGKRKVVL 318 (845)
T ss_pred hcccc--------------------------------CCcEEeeccccCCHHHHHhhcCCCCCCcceEEE
Confidence 3 110 123488999999999999999988888777765
No 246
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.32 E-value=3.3e-11 Score=153.56 Aligned_cols=299 Identities=18% Similarity=0.227 Sum_probs=189.3
Q ss_pred CCCCCHHHHHHHHHHHcC---CCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhc
Q 000324 1339 FKHFNPIQTQVFTVLYNT---DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~~---~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~ 1415 (1665)
...+|+-|.+|+..+... ....++.+.||||||.+|+-+|-..+.+ +. .+|+++|-.+|..|+.++++.+|+
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~---Gk--qvLvLVPEI~Ltpq~~~rf~~rFg 270 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ---GK--QVLVLVPEIALTPQLLARFKARFG 270 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc---CC--EEEEEeccccchHHHHHHHHHHhC
Confidence 346889999999998765 4668999999999999999999888887 33 899999999999999999999987
Q ss_pred CCCCcEEEEEeCCCccchh-------ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccC--CCCchhHHH
Q 000324 1416 QGLGMRVVELTGETAMDLK-------LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG--GQGGPVLEV 1486 (1665)
Q Consensus 1416 ~~~~i~v~~l~G~~~~~~~-------~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~--~~~g~~~e~ 1486 (1665)
.+|+.++++.+...+ ....+.|||+|=. .-...+.++++|||||=|--. ...++.|..
T Consensus 271 ----~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRS---------AlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhA 337 (730)
T COG1198 271 ----AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRS---------ALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHA 337 (730)
T ss_pred ----CChhhhcccCChHHHHHHHHHHhcCCceEEEEech---------hhcCchhhccEEEEeccccccccCCcCCCcCH
Confidence 578999999887633 2245689999922 233457899999999999543 233444422
Q ss_pred HHHHHHHHHhhcCCCCeEEEEcccCCChHHHHHHhcccCC--cEEecCCCC-CccceEEEEeecccchhhHHHHhcChhH
Q 000324 1487 IVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSH--GLFNFPPGV-RPVPLEIHIQGVDITNFEARMQAMTKPT 1563 (1665)
Q Consensus 1487 ~~srl~~i~~~~~~~~riI~lSATl~n~~dl~~wl~~~~~--~~~~f~~~~-rpv~l~i~i~~~~~~~~~~~~~~~~k~~ 1563 (1665)
..+..+.++ ..+.++|+-|||++ +-.|...... ..+.+.... +..+..+++........... .....+.
T Consensus 338 --RdvA~~Ra~-~~~~pvvLgSATPS----LES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~-~~lS~~L 409 (730)
T COG1198 338 --RDVAVLRAK-KENAPVVLGSATPS----LESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETG-RSLSPAL 409 (730)
T ss_pred --HHHHHHHHH-HhCCCEEEecCCCC----HHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccC-ccCCHHH
Confidence 233333222 34788999999974 3334433222 223332222 12123333322221111110 1156788
Q ss_pred HHHHHHHhcCCCCEEEEeCchHHHHHHHHHH------------------------HHhcccCCCcccccccCCcccchhh
Q 000324 1564 FTAIVQHAKNEKPALVFVPSRKYVRLTAVDL------------------------MTYSSMDGDQKSAFLLWPAEEVEPF 1619 (1665)
Q Consensus 1564 ~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L------------------------~~~~~~~~~~~~~~l~~~~~~l~~~ 1619 (1665)
+..|.+.+..+.++|+|+|.|--+-.+.-.= +.+|............|..+.+...
T Consensus 410 l~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~ 489 (730)
T COG1198 410 LEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAV 489 (730)
T ss_pred HHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEe
Confidence 8999999999999999999987543222110 1112111111111222222222222
Q ss_pred ---HhhhhHHHHHHHh-cccEEEEcCCCCHHH--HHHHHHHHhcCCceEEE
Q 000324 1620 ---IDNIQEEMLKATL-RHGVGYLHEGLNKTD--QEVVSALFEAGKIKICY 1664 (1665)
Q Consensus 1620 ---~~~i~d~~L~~~l-~~gI~~~H~~m~~~d--R~~v~~~F~~G~i~VLV 1664 (1665)
.+++ .+.|+..+ +..|..+-++.+... =+..+..|.+|++.|||
T Consensus 490 G~Gteri-eeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILi 539 (730)
T COG1198 490 GPGTERI-EEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILI 539 (730)
T ss_pred cccHHHH-HHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeee
Confidence 2222 24455555 678888888866533 46778999999999997
No 247
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.32 E-value=3.4e-10 Score=145.90 Aligned_cols=161 Identities=22% Similarity=0.199 Sum_probs=99.1
Q ss_pred CHHHHHHHHHHHc----CC--C-cEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000324 497 NRVQSRVYKSALS----SA--D-NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (1665)
Q Consensus 497 ~~iQ~~~i~~~l~----~~--~-nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (1665)
..+|-+|++.+.. +. . =++-.|.||||||++=. =|+..+... ..+++..+..-.|.|.-|.-+.
T Consensus 410 F~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNA-RImyaLsd~--------~~g~RfsiALGLRTLTLQTGda 480 (1110)
T TIGR02562 410 FRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANA-RAMYALRDD--------KQGARFAIALGLRSLTLQTGHA 480 (1110)
T ss_pred cchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHH-HHHHHhCCC--------CCCceEEEEccccceeccchHH
Confidence 4689999987754 11 1 24456999999998543 233333321 2467888899999999999888
Q ss_pred HHHhhccCCcEEEEEECCCccc---------------------------Hh---------------------------hh
Q 000324 570 LSNRLQMYDVKVRELSGDQTLT---------------------------RQ---------------------------QI 595 (1665)
Q Consensus 570 ~~~~~~~~gi~V~~ltGd~~~~---------------------------~~---------------------------~~ 595 (1665)
++++++--.-.+++++|+.... .+ ..
T Consensus 481 ~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rl 560 (1110)
T TIGR02562 481 LKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTL 560 (1110)
T ss_pred HHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhh
Confidence 8888753333455555532100 00 00
Q ss_pred ccccEEEeChhhHHHHH---hhcCCC-cccc-ceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEcccC
Q 000324 596 EETQIIVTTPEKWDIIT---RKSGDR-TYTQ-LVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670 (1665)
Q Consensus 596 ~~~~IiV~TPekld~l~---r~~~~~-~~l~-~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl 670 (1665)
-.+.|+|||+..+-... |..... ..+. .-+.|||||+|.. .+..-.++.+++..... -+.++++|||||
T Consensus 561 l~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaY----D~~~~~~L~rlL~w~~~--lG~~VlLmSATL 634 (1110)
T TIGR02562 561 LAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDY----EPEDLPALLRLVQLAGL--LGSRVLLSSATL 634 (1110)
T ss_pred hcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccC----CHHHHHHHHHHHHHHHH--cCCCEEEEeCCC
Confidence 13569999999863322 211100 0011 1268999999965 44455566666665444 467899999999
Q ss_pred CC
Q 000324 671 PN 672 (1665)
Q Consensus 671 ~n 672 (1665)
|.
T Consensus 635 P~ 636 (1110)
T TIGR02562 635 PP 636 (1110)
T ss_pred CH
Confidence 96
No 248
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.31 E-value=1.2e-09 Score=143.51 Aligned_cols=198 Identities=17% Similarity=0.190 Sum_probs=111.0
Q ss_pred eEEEEcccCCCh---HHHHHHHhccc--cCceEEecCCCccccceEEEEee-e-c-CchhHHHHHHHHHHHHHHHHHhCC
Q 000324 662 RLVGLSATLPNY---EDVALFLRVNL--EKGLFYFDNSYRPVPLSQQYIGI-Q-V-KKPLQRFQLMNDLCYEKVVAVAGK 733 (1665)
Q Consensus 662 riV~lSATl~n~---~dv~~~l~~~~--~~~~~~f~~~~rpv~l~~~~~~~-~-~-~~~~~~~~~~~~~~~~~i~~~~~~ 733 (1665)
.+|++||||... ..+.+.++... ......+.+.|..-.....++.- . . .........+.+.+.+.+ . . +
T Consensus 458 ~vIltSATL~~~~~f~~~~~~lGL~~~~~~~~~~~~SpF~~~~q~~l~vp~~~~~p~~~~~~~~~~~~~i~~l~-~-~-~ 534 (697)
T PRK11747 458 GAVLTSATLRSLNSFDRFQEQSGLPEKDGDRFLALPSPFDYPNQGKLVIPKMRAEPDNEEAHTAEMAEFLPELL-E-K-H 534 (697)
T ss_pred EEEEEeeeCCCCCchHHHHHHcCCCCCCCceEEEcCCCCCHHHccEEEeCCCCCCCCCcHHHHHHHHHHHHHHH-h-c-C
Confidence 468889998753 33444455532 12233344433221111111111 0 1 112223334444443333 2 3 4
Q ss_pred CeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHH
Q 000324 734 HQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVE 813 (1665)
Q Consensus 734 ~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~ 813 (1665)
+.+|||++|.+....++..|..... ..+.. ++. ..|..++
T Consensus 535 gg~LVlFtSy~~l~~v~~~l~~~~~------------------------------------~~ll~-Q~~---~~~~~ll 574 (697)
T PRK11747 535 KGSLVLFASRRQMQKVADLLPRDLR------------------------------------LMLLV-QGD---QPRQRLL 574 (697)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHhcC------------------------------------CcEEE-eCC---chHHHHH
Confidence 4589999999999988887764210 11222 332 2466677
Q ss_pred HHHh----CCCCCeEEeccccccccCCCc--eEEEEecccccCCCCC----------------CcccC----CHHHHHhh
Q 000324 814 DLFG----DGHVQVLVSTATLAWGVNLPA--HTVIIKGTQIYNPEKG----------------AWTEL----SPLDIMQM 867 (1665)
Q Consensus 814 ~~F~----~g~i~VLVaT~tla~GVdlP~--v~vVI~~t~~yd~~~g----------------~~~~~----s~~~~~Qr 867 (1665)
+.|+ .|.-.||++|..+..|||+|+ .+.||....||.++.. .|.++ -...+.|.
T Consensus 575 ~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg 654 (697)
T PRK11747 575 EKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQA 654 (697)
T ss_pred HHHHHHhccCCCeEEEEeccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 6665 467789999999999999997 4555555566655432 12222 34578899
Q ss_pred hcccCCCCCCCceEEEEEeCCCcHHHHHHhhcCCCc
Q 000324 868 LGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLP 903 (1665)
Q Consensus 868 ~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~p 903 (1665)
+||.-|... ..|..+++-..-....|-+.+-+.+|
T Consensus 655 ~GRlIRs~~-D~G~i~ilD~R~~~~~Yg~~~l~sLP 689 (697)
T PRK11747 655 VGRLIRSEQ-DRGRVTILDRRLLTKRYGKRLLDALP 689 (697)
T ss_pred hccccccCC-ceEEEEEEcccccchhHHHHHHHhCC
Confidence 999999754 47876666665444556544444455
No 249
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.29 E-value=3.8e-10 Score=152.17 Aligned_cols=89 Identities=19% Similarity=0.320 Sum_probs=64.1
Q ss_pred HHHhc-CCCCCCHHHHHHHHHHH---cCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHH
Q 000324 1333 EALYQ-GFKHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYR 1408 (1665)
Q Consensus 1333 ~~l~~-~f~~~~~iQ~qa~~~ll---~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~ 1408 (1665)
+.++. ||. ++|.|.+..+.++ ..+.++++.||||+|||++|++|++..... +. ++||.+||++|..|++.
T Consensus 237 ~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~---~~--~vvi~t~t~~Lq~Ql~~ 310 (850)
T TIGR01407 237 KNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAIT---EK--PVVISTNTKVLQSQLLE 310 (850)
T ss_pred HhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcC---CC--eEEEEeCcHHHHHHHHH
Confidence 33433 455 8999998666433 345569999999999999999999876552 33 89999999999999876
Q ss_pred -HHHHHhcCCCC--cEEEEEeCC
Q 000324 1409 -DWEIKFGQGLG--MRVVELTGE 1428 (1665)
Q Consensus 1409 -~~~~~~~~~~~--i~v~~l~G~ 1428 (1665)
++. .+.+.++ ++++.+.|.
T Consensus 311 ~~~~-~l~~~~~~~~~~~~~kG~ 332 (850)
T TIGR01407 311 KDIP-LLNEILNFKINAALIKGK 332 (850)
T ss_pred HHHH-HHHHHcCCCceEEEEEcc
Confidence 344 4444333 566665553
No 250
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.29 E-value=1.8e-10 Score=152.40 Aligned_cols=199 Identities=18% Similarity=0.226 Sum_probs=115.1
Q ss_pred eEEEEcccCCChHHHHHHHhccccCceE---EecCCCccccceEEEEeeecCchh--HHHHHHHHHHHHHHHHHhCCCeE
Q 000324 662 RLVGLSATLPNYEDVALFLRVNLEKGLF---YFDNSYRPVPLSQQYIGIQVKKPL--QRFQLMNDLCYEKVVAVAGKHQV 736 (1665)
Q Consensus 662 riV~lSATl~n~~dv~~~l~~~~~~~~~---~f~~~~rpv~l~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~v 736 (1665)
-+|++||||.....+..+++.......+ ...+.+........+++....... .....+...+.+.+ ... ++.+
T Consensus 405 ~~vl~SaTL~~~~~f~~~~~~~~~~~~~~~~~~~spf~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~-~~~-~~~~ 482 (654)
T COG1199 405 SVVLTSATLSPLDSFSSLLGLLGLEEKLRFLSLPSPFNYEEQGQLYVPTDLPEPREPELLAKLAAYLREIL-KAS-PGGV 482 (654)
T ss_pred cEEEeeeeccCCCcHHHHHHHcCCccccceeccCCCCChhhcceEeccccCCCCCChHHHHHHHHHHHHHH-hhc-CCCE
Confidence 5899999999877777777765433222 112222211111122222222111 22233333333322 222 4589
Q ss_pred EEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHH
Q 000324 737 LIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLF 816 (1665)
Q Consensus 737 LVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F 816 (1665)
|||++|.+....++..+...... + ....++.- .+...++.|
T Consensus 483 lvlF~Sy~~l~~~~~~~~~~~~~---~---------------------------------~v~~q~~~---~~~~~l~~f 523 (654)
T COG1199 483 LVLFPSYEYLKRVAERLKDERST---L---------------------------------PVLTQGED---EREELLEKF 523 (654)
T ss_pred EEEeccHHHHHHHHHHHhhcCcc---c---------------------------------eeeecCCC---cHHHHHHHH
Confidence 99999999999888887764311 0 01123433 334566666
Q ss_pred hCCCC-CeEEeccccccccCCCce---EEEEecccccCCCCC----------------Cc----ccCCHHHHHhhhcccC
Q 000324 817 GDGHV-QVLVSTATLAWGVNLPAH---TVIIKGTQIYNPEKG----------------AW----TELSPLDIMQMLGRAG 872 (1665)
Q Consensus 817 ~~g~i-~VLVaT~tla~GVdlP~v---~vVI~~t~~yd~~~g----------------~~----~~~s~~~~~Qr~GRAG 872 (1665)
..+.- -++|+|..++.|||+|+- .|||. ..||-.+.. .| ....+..+.|.+||+-
T Consensus 524 ~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~-~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlI 602 (654)
T COG1199 524 KASGEGLILVGGGSFWEGVDFPGDALRLVVIV-GLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLI 602 (654)
T ss_pred HHhcCCeEEEeeccccCcccCCCCCeeEEEEE-ecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhcccc
Confidence 55443 899999999999999985 44554 444443322 11 2235678899999999
Q ss_pred CCCCCCceEEEEEeCCCcHHHHHHhhcCCCc
Q 000324 873 RPQYDSYGEGIIITGHSELRYYLSLMNQQLP 903 (1665)
Q Consensus 873 R~g~d~~G~~iil~~~~~~~~y~~ll~~~~p 903 (1665)
|. .+..|..+++-..-....|.+.+...+|
T Consensus 603 R~-~~D~G~ivllD~R~~~~~y~~~l~~~l~ 632 (654)
T COG1199 603 RS-EDDRGVIVLLDKRYATKRYGKLLLDSLP 632 (654)
T ss_pred cc-CCCceEEEEecccchhhhHHHHHHHhCC
Confidence 94 5668888887766555556666555554
No 251
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.27 E-value=7.5e-11 Score=154.08 Aligned_cols=154 Identities=17% Similarity=0.232 Sum_probs=98.3
Q ss_pred CCCHHHHHHHHHHHc---------CCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHH
Q 000324 1341 HFNPIQTQVFTVLYN---------TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll~---------~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~ 1411 (1665)
.+++.|..|+..++. +.++.++++|||||||+++...+...+.. ... +++|+|+|+.+|..|+.+.|.
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~-~~~--~~vl~lvdR~~L~~Q~~~~f~ 314 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL-LKN--PKVFFVVDRRELDYQLMKEFQ 314 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh-cCC--CeEEEEECcHHHHHHHHHHHH
Confidence 378889999988653 24579999999999999987777655533 223 399999999999999999998
Q ss_pred HHhcCCCCcEEEEEeCCCccch-hccC--CCcEEEEChhhHHHHHHhhhccccCCC-ccEEEeecccccCCCCchhHHHH
Q 000324 1412 IKFGQGLGMRVVELTGETAMDL-KLLE--KGQIIISTPEKWDALSRRWKQRKYVQQ-VSLFIIDELHLIGGQGGPVLEVI 1487 (1665)
Q Consensus 1412 ~~~~~~~~i~v~~l~G~~~~~~-~~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~-v~llViDEaH~l~~~~g~~~e~~ 1487 (1665)
.++.. .+. ..+ ...+. +.+. .+.|+|+|..++......+........ --+||+||||+..... +
T Consensus 315 -~~~~~---~~~-~~~-s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~------~ 382 (667)
T TIGR00348 315 -SLQKD---CAE-RIE-SIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGE------L 382 (667)
T ss_pred -hhCCC---CCc-ccC-CHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchH------H
Confidence 44421 010 001 11111 1222 358999999998754333211111111 1289999999875322 2
Q ss_pred HHHHHHHHhhcCCCCeEEEEcccCCC
Q 000324 1488 VSRMRYIASQVENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1488 ~srl~~i~~~~~~~~riI~lSATl~n 1513 (1665)
...|+. .+ ++..++|||||+-.
T Consensus 383 ~~~l~~---~~-p~a~~lGfTaTP~~ 404 (667)
T TIGR00348 383 AKNLKK---AL-KNASFFGFTGTPIF 404 (667)
T ss_pred HHHHHh---hC-CCCcEEEEeCCCcc
Confidence 222322 22 35678999999864
No 252
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.24 E-value=7.2e-10 Score=135.38 Aligned_cols=328 Identities=20% Similarity=0.233 Sum_probs=189.4
Q ss_pred CCCCHHHHHHHHHH---HcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 494 TQLNRVQSRVYKSA---LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~---l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
..++++|-+-+..+ +..+-|.|+.-.-|-|||+.. ++.+..+.....-.| --+|++|.-.|. .+.++|
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~~~~G-------PfLVi~P~StL~-NW~~Ef 236 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRKGIPG-------PFLVIAPKSTLD-NWMNEF 236 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhcCCCC-------CeEEEeeHhhHH-HHHHHH
Confidence 37889999887764 455668999999999999865 334444433222112 367899987775 456777
Q ss_pred HHhhccCCcEEEEEECCCcccHhh------hccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHH
Q 000324 571 SNRLQMYDVKVRELSGDQTLTRQQ------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLE 644 (1665)
Q Consensus 571 ~~~~~~~gi~V~~ltGd~~~~~~~------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le 644 (1665)
+++.. +++|..++||..-.... ....+|+|||.|. ..+.... ..--..+++||||+|+|-+. .
T Consensus 237 ~rf~P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi---~i~dk~~-lk~~~W~ylvIDEaHRiKN~-----~ 305 (971)
T KOG0385|consen 237 KRFTP--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEI---AIKDKSF-LKKFNWRYLVIDEAHRIKNE-----K 305 (971)
T ss_pred HHhCC--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHH---HHhhHHH-HhcCCceEEEechhhhhcch-----h
Confidence 77644 68999999987433221 1368999999995 3222110 01123589999999999753 2
Q ss_pred HHHHHHHHHHhhccCCeeEEEEcccC-C-------------------ChHHHHHHHhccccCc----eEEecC-------
Q 000324 645 SIVARTVRQIETTKEHIRLVGLSATL-P-------------------NYEDVALFLRVNLEKG----LFYFDN------- 693 (1665)
Q Consensus 645 ~iv~r~~~~~~~~~~~~riV~lSATl-~-------------------n~~dv~~~l~~~~~~~----~~~f~~------- 693 (1665)
+.+.++++.+.. .-| ++++.|. . ..+++..|+......+ +.....
T Consensus 306 s~L~~~lr~f~~---~nr-LLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlL 381 (971)
T KOG0385|consen 306 SKLSKILREFKT---DNR-LLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLL 381 (971)
T ss_pred hHHHHHHHHhcc---cce-eEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHH
Confidence 234444443322 233 6677772 1 2356666765421000 000000
Q ss_pred ---------CCccccceEEEEeeec-------------------CchhHHHHHHHH------------------------
Q 000324 694 ---------SYRPVPLSQQYIGIQV-------------------KKPLQRFQLMND------------------------ 721 (1665)
Q Consensus 694 ---------~~rpv~l~~~~~~~~~-------------------~~~~~~~~~~~~------------------------ 721 (1665)
+.-|-.--..|++... .....+...+|-
T Consensus 382 RR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyt 461 (971)
T KOG0385|consen 382 RRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYT 461 (971)
T ss_pred HHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCC
Confidence 0001000011111110 000000111110
Q ss_pred ------------HHHHHHHH--HhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccc
Q 000324 722 ------------LCYEKVVA--VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSN 787 (1665)
Q Consensus 722 ------------~~~~~i~~--~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 787 (1665)
.+.++++. ...+++||||..- ..+-..|.+++.
T Consensus 462 tdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQm----t~mLDILeDyc~----------------------------- 508 (971)
T KOG0385|consen 462 TDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQM----TRMLDILEDYCM----------------------------- 508 (971)
T ss_pred cchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHH----HHHHHHHHHHHH-----------------------------
Confidence 01122221 1236677777532 122222332221
Q ss_pred hhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCC---CCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHH
Q 000324 788 DLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGH---VQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDI 864 (1665)
Q Consensus 788 ~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~---i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~ 864 (1665)
+..+...-+-|.++.++|...++.|.... .-.|++|.+.+-|||+-+.++||.+++-|+|.. =
T Consensus 509 ----~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~----------D 574 (971)
T KOG0385|consen 509 ----LRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQV----------D 574 (971)
T ss_pred ----hcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchh----------h
Confidence 12233455589999999999999997643 457899999999999999999999666666653 4
Q ss_pred HhhhcccCCCCCCCceEEEEEeCCCcHH
Q 000324 865 MQMLGRAGRPQYDSYGEGIIITGHSELR 892 (1665)
Q Consensus 865 ~Qr~GRAGR~g~d~~G~~iil~~~~~~~ 892 (1665)
+|.+-||-|-|..+.-.+|.+++.+..+
T Consensus 575 LQAmDRaHRIGQ~K~V~V~RLitentVE 602 (971)
T KOG0385|consen 575 LQAMDRAHRIGQKKPVVVYRLITENTVE 602 (971)
T ss_pred hHHHHHHHhhCCcCceEEEEEeccchHH
Confidence 6777777777766788889898887654
No 253
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.23 E-value=1.7e-09 Score=137.25 Aligned_cols=127 Identities=12% Similarity=0.094 Sum_probs=92.6
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (1665)
.++++|--.--. ++.+ -|.-..||-|||+++.+|+.-.... +..+-+|+..--||.-=+..+...+
T Consensus 78 r~ydVQliGglv-Lh~G--~IAEMkTGEGKTLvAtLpayLnAL~-----------GkgVhVVTvNdYLA~RDae~mg~vy 143 (925)
T PRK12903 78 RPYDVQIIGGII-LDLG--SVAEMKTGEGKTITSIAPVYLNALT-----------GKGVIVSTVNEYLAERDAEEMGKVF 143 (925)
T ss_pred CcCchHHHHHHH-HhcC--CeeeecCCCCccHHHHHHHHHHHhc-----------CCceEEEecchhhhhhhHHHHHHHH
Confidence 556677655543 3332 4789999999999999988644333 2347778888899998888888888
Q ss_pred ccCCcEEEEEECCCcccH-hhhccccEEEeChhhH--HHHHhhcC---CCccccceeEEEEeccccc
Q 000324 575 QMYDVKVRELSGDQTLTR-QQIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (1665)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~-~~~~~~~IiV~TPekl--d~l~r~~~---~~~~l~~v~liIiDEaH~l 635 (1665)
..+|++|+....+..... +..-.++|.++|..-| |.|..+.. +......+.+.||||||.+
T Consensus 144 ~fLGLsvG~i~~~~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSI 210 (925)
T PRK12903 144 NFLGLSVGINKANMDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSI 210 (925)
T ss_pred HHhCCceeeeCCCCChHHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhe
Confidence 899999999988765443 3445799999999874 66654432 2233456789999999966
No 254
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.20 E-value=1.5e-10 Score=144.11 Aligned_cols=153 Identities=19% Similarity=0.163 Sum_probs=103.5
Q ss_pred CCCCHHHHHHHHHHH----cCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhc
Q 000324 1340 KHFNPIQTQVFTVLY----NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll----~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~ 1415 (1665)
..++.+|..|+..+. .++..+|++|.||+|||.+|..-|. .|.+....+ |+|+++-+++|+.|.+..+. .|-
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~-rL~r~~~~K--RVLFLaDR~~Lv~QA~~af~-~~~ 239 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIID-RLIKSGWVK--RVLFLADRNALVDQAYGAFE-DFL 239 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHH-HHHhcchhh--eeeEEechHHHHHHHHHHHH-HhC
Confidence 478999999998764 4677799999999999999955444 444434444 99999999999999999888 443
Q ss_pred CCCCcEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhh---hccccCCCccEEEeecccccCCCCchhHHHHHHHHH
Q 000324 1416 QGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRW---KQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMR 1492 (1665)
Q Consensus 1416 ~~~~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~---~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~ 1492 (1665)
.. +-.+..+.+... + ..++|.|+|-..+......- ..+.....+++|||||||+-.-. .++.+++-+.
T Consensus 240 P~-~~~~n~i~~~~~-~----~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~---~~~~I~dYFd 310 (875)
T COG4096 240 PF-GTKMNKIEDKKG-D----TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYS---EWSSILDYFD 310 (875)
T ss_pred CC-ccceeeeecccC-C----cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHh---hhHHHHHHHH
Confidence 32 233333333211 1 25799999999887655432 12334567999999999975321 1222333222
Q ss_pred HHHhhcCCCCeEEEEcccCCCh
Q 000324 1493 YIASQVENKIRIVALSTSLANA 1514 (1665)
Q Consensus 1493 ~i~~~~~~~~riI~lSATl~n~ 1514 (1665)
.+ .+|++||+.+.
T Consensus 311 A~---------~~gLTATP~~~ 323 (875)
T COG4096 311 AA---------TQGLTATPKET 323 (875)
T ss_pred HH---------HHhhccCcccc
Confidence 22 36779998763
No 255
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.18 E-value=4.2e-09 Score=134.70 Aligned_cols=127 Identities=17% Similarity=0.104 Sum_probs=94.1
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (1665)
.++++|--..-. +. +.-|+-+.||.|||+++.+|+.-.... +..+-+|+++..||..-++.+...+
T Consensus 76 r~ydvQlig~l~-L~--~G~IaEm~TGEGKTL~a~l~ayl~aL~-----------G~~VhVvT~NdyLA~RD~e~m~pvy 141 (870)
T CHL00122 76 RHFDVQLIGGLV-LN--DGKIAEMKTGEGKTLVATLPAYLNALT-----------GKGVHIVTVNDYLAKRDQEWMGQIY 141 (870)
T ss_pred CCCchHhhhhHh-hc--CCccccccCCCCchHHHHHHHHHHHhc-----------CCceEEEeCCHHHHHHHHHHHHHHH
Confidence 356667554432 22 337889999999999999988543322 3358899999999999999999999
Q ss_pred ccCCcEEEEEECCCcccHh-hhccccEEEeChhhH--HHHHhhcC---CCccccceeEEEEeccccc
Q 000324 575 QMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (1665)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~~-~~~~~~IiV~TPekl--d~l~r~~~---~~~~l~~v~liIiDEaH~l 635 (1665)
..+|++|+...++.+...+ ..-.++|+++|..-+ |.|..+.. .......+.+.||||||.+
T Consensus 142 ~~LGLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSi 208 (870)
T CHL00122 142 RFLGLTVGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSI 208 (870)
T ss_pred HHcCCceeeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhh
Confidence 9999999999887765543 345789999999864 65554432 1223456789999999966
No 256
>COG4889 Predicted helicase [General function prediction only]
Probab=99.18 E-value=2.6e-10 Score=139.50 Aligned_cols=341 Identities=19% Similarity=0.268 Sum_probs=183.0
Q ss_pred CCCCCCHHHHHHHHHHHcC---CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHH
Q 000324 492 GMTQLNRVQSRVYKSALSS---ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (1665)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~---~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~ 568 (1665)
.-++|+|+|+.+++.++.+ ++.-=+.+..|+|||..++ -|...+. ..+++|++|..+|..|..+
T Consensus 158 ~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsL-kisEala------------~~~iL~LvPSIsLLsQTlr 224 (1518)
T COG4889 158 KPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSL-KISEALA------------AARILFLVPSISLLSQTLR 224 (1518)
T ss_pred CCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHH-HHHHHHh------------hhheEeecchHHHHHHHHH
Confidence 3468999999999998754 3333344567999999874 4444443 3589999999999999999
Q ss_pred HHHHhhccCCcEEEEEECCCcccHhh----------------------------hccccEEEeChhhHHHHHhhcCCCcc
Q 000324 569 NLSNRLQMYDVKVRELSGDQTLTRQQ----------------------------IEETQIIVTTPEKWDIITRKSGDRTY 620 (1665)
Q Consensus 569 ~~~~~~~~~gi~V~~ltGd~~~~~~~----------------------------~~~~~IiV~TPekld~l~r~~~~~~~ 620 (1665)
.|..- +.+.++...+++|...++.. ..+--|+++|...+..+-..- ..-
T Consensus 225 ew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQ--e~G 301 (1518)
T COG4889 225 EWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQ--EAG 301 (1518)
T ss_pred HHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHH--HcC
Confidence 99874 45567777777665533210 113448899998764443221 234
Q ss_pred ccceeEEEEeccccccc--CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceE------Eec
Q 000324 621 TQLVKLLIIDEIHLLHD--NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLF------YFD 692 (1665)
Q Consensus 621 l~~v~liIiDEaH~l~d--~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~------~f~ 692 (1665)
+..++|||+||||+-.. .-|.. .+...++.. .+.-+..+.+.|+||..-+.+-.+--.......+. .|.
T Consensus 302 ~~~fDliicDEAHRTtGa~~a~dd-~saFt~vHs--~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fG 378 (1518)
T COG4889 302 LDEFDLIICDEAHRTTGATLAGDD-KSAFTRVHS--DQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFG 378 (1518)
T ss_pred CCCccEEEecchhccccceecccC-cccceeecC--cchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhc
Confidence 67789999999997532 01100 011111100 00112234577788843221111100000000000 111
Q ss_pred CCCcccc---------c---eEEEEeeecCchhHHHH-------------HHHH--HHHHHHHHHhC-------------
Q 000324 693 NSYRPVP---------L---SQQYIGIQVKKPLQRFQ-------------LMND--LCYEKVVAVAG------------- 732 (1665)
Q Consensus 693 ~~~rpv~---------l---~~~~~~~~~~~~~~~~~-------------~~~~--~~~~~i~~~~~------------- 732 (1665)
+.+.... | ..-+..+........++ .... -|+.-+.+..+
T Consensus 379 eef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~a 458 (1518)
T COG4889 379 EEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTA 458 (1518)
T ss_pred hhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCch
Confidence 1111100 0 01111111111001110 0000 01222222211
Q ss_pred -CCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEec--CCCCHHHH
Q 000324 733 -KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHH--AGMTRGDR 809 (1665)
Q Consensus 733 -~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~H--agm~~~dR 809 (1665)
..+.|-||.+.+....++..+... +..+... ..++.....+.+-| |.|...+|
T Consensus 459 p~~RAIaF~k~I~tSK~i~~sFe~V--------------------ve~Y~~E----lk~d~~nL~iSi~HvDGtmNal~R 514 (1518)
T COG4889 459 PMQRAIAFAKDIKTSKQIAESFETV--------------------VEAYDEE----LKKDFKNLKISIDHVDGTMNALER 514 (1518)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH--------------------HHHHHHH----HHhcCCCceEEeecccccccHHHH
Confidence 113445555555555444443321 1111100 11112334455555 77998888
Q ss_pred HHHHHH---HhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEe
Q 000324 810 QLVEDL---FGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT 886 (1665)
Q Consensus 810 ~~v~~~---F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~ 886 (1665)
...+.+ |....++||---..|+.|||+|+.+-||- |||.+ |.-|++|-+||.-|-.. ..-.+||+.
T Consensus 515 ~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViF----f~pr~------smVDIVQaVGRVMRKa~-gK~yGYIIL 583 (1518)
T COG4889 515 LDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIF----FDPRS------SMVDIVQAVGRVMRKAK-GKKYGYIIL 583 (1518)
T ss_pred HHHHhccCCCCcchheeeccchhhhcCCCccccceEEE----ecCch------hHHHHHHHHHHHHHhCc-CCccceEEE
Confidence 544443 46678999999999999999999999997 99988 99999999999999532 223455554
No 257
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.18 E-value=5.9e-09 Score=132.87 Aligned_cols=127 Identities=16% Similarity=0.092 Sum_probs=95.0
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (1665)
.+.++|--.--.+ +.+ -|.-+.||-|||+++.+|+.-.... +..+-+|++.--||..=++.+...+
T Consensus 85 r~ydVQliGgl~L-h~G--~IAEM~TGEGKTL~atlpaylnAL~-----------GkgVhVVTvNdYLA~RDae~m~~vy 150 (939)
T PRK12902 85 RHFDVQLIGGMVL-HEG--QIAEMKTGEGKTLVATLPSYLNALT-----------GKGVHVVTVNDYLARRDAEWMGQVH 150 (939)
T ss_pred CcchhHHHhhhhh-cCC--ceeeecCCCChhHHHHHHHHHHhhc-----------CCCeEEEeCCHHHHHhHHHHHHHHH
Confidence 4566665444333 322 5889999999999999988765443 3358899999999999999999999
Q ss_pred ccCCcEEEEEECCCcccHh-hhccccEEEeChhhH--HHHHhhcC---CCccccceeEEEEeccccc
Q 000324 575 QMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (1665)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~~-~~~~~~IiV~TPekl--d~l~r~~~---~~~~l~~v~liIiDEaH~l 635 (1665)
..+|++|+...++.+...+ ..-.++|+++|+..+ |.|..+.. .......+.+.||||||.+
T Consensus 151 ~~LGLtvg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSI 217 (939)
T PRK12902 151 RFLGLSVGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSI 217 (939)
T ss_pred HHhCCeEEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccce
Confidence 9999999999887765433 345899999999985 55544432 1234566889999999966
No 258
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.14 E-value=1.3e-08 Score=134.90 Aligned_cols=73 Identities=21% Similarity=0.274 Sum_probs=59.2
Q ss_pred CCCCCCHHHHHHHHHH---HcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHH
Q 000324 492 GMTQLNRVQSRVYKSA---LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (1665)
Q Consensus 492 g~~~l~~iQ~~~i~~~---l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~ 568 (1665)
.|..++|.|.+....+ +..++++++-||||+|||++.+.+.|....... ...||+|.+.|.+=..|..+
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~--------~~~kIiy~sRThsQl~q~i~ 78 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP--------EVRKIIYASRTHSQLEQATE 78 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc--------ccccEEEEcccchHHHHHHH
Confidence 3778899999988765 456788999999999999999999998765431 13578888888888888888
Q ss_pred HHHH
Q 000324 569 NLSN 572 (1665)
Q Consensus 569 ~~~~ 572 (1665)
++++
T Consensus 79 Elk~ 82 (705)
T TIGR00604 79 ELRK 82 (705)
T ss_pred HHHh
Confidence 8877
No 259
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.11 E-value=5.4e-09 Score=127.87 Aligned_cols=253 Identities=17% Similarity=0.204 Sum_probs=168.7
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHHHHHhh--cCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccch
Q 000324 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKA--SETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL 1433 (1665)
Q Consensus 1356 ~~dnvlv~ApTGSGKTl~a~l~il~~l~~~--~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~ 1433 (1665)
.+..++|.++||||||.-- | +.+... ...+ ++.+.-|.|--|.-++++.....+..+|-.|+.-.- .+.
T Consensus 65 ~nqvlIviGeTGsGKSTQi--p--QyL~eaG~~~~g--~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IR---Fed 135 (674)
T KOG0922|consen 65 DNQVLIVIGETGSGKSTQI--P--QYLAEAGFASSG--KIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIR---FED 135 (674)
T ss_pred HCCEEEEEcCCCCCccccH--h--HHHHhcccccCC--cEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEE---ecc
Confidence 3666899999999999842 2 122221 1234 688999999998888888887777666665543221 011
Q ss_pred hccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeeccc--ccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccC
Q 000324 1434 KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH--LIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSL 1511 (1665)
Q Consensus 1434 ~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH--~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl 1511 (1665)
..-....|.+.|-|.|..-. .....+...+.||+|||| .+..+ .++--++.+... .++.++|.+|||+
T Consensus 136 ~ts~~TrikymTDG~LLRE~---l~Dp~LskYsvIIlDEAHERsl~TD------iLlGlLKki~~~-R~~LklIimSATl 205 (674)
T KOG0922|consen 136 STSKDTRIKYMTDGMLLREI---LKDPLLSKYSVIILDEAHERSLHTD------ILLGLLKKILKK-RPDLKLIIMSATL 205 (674)
T ss_pred cCCCceeEEEecchHHHHHH---hcCCccccccEEEEechhhhhhHHH------HHHHHHHHHHhc-CCCceEEEEeeee
Confidence 11134579999999876433 245678999999999999 33322 255556666543 5578999999998
Q ss_pred CChHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHH
Q 000324 1512 ANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTA 1591 (1665)
Q Consensus 1512 ~n~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la 1591 (1665)
++.-+.++++.- .++.+.. |..|+++.....+..++..... ....+ |... .+.+-+|||.+.+.+.+.++
T Consensus 206 -da~kfS~yF~~a--~i~~i~G--R~fPVei~y~~~p~~dYv~a~~---~tv~~-Ih~~-E~~GDILvFLtGqeEIe~~~ 275 (674)
T KOG0922|consen 206 -DAEKFSEYFNNA--PILTIPG--RTFPVEILYLKEPTADYVDAAL---ITVIQ-IHLT-EPPGDILVFLTGQEEIEAAC 275 (674)
T ss_pred -cHHHHHHHhcCC--ceEeecC--CCCceeEEeccCCchhhHHHHH---HHHHH-HHcc-CCCCCEEEEeCCHHHHHHHH
Confidence 788899999763 3444443 6667777776655444433221 11111 2222 34456999999999999999
Q ss_pred HHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEE
Q 000324 1592 VDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICY 1664 (1665)
Q Consensus 1592 ~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLV 1664 (1665)
..|.......... ...-+..+||.|+.+++..|..---.|.-+|++
T Consensus 276 ~~l~e~~~~~~~~---------------------------~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIl 321 (674)
T KOG0922|consen 276 ELLRERAKSLPED---------------------------CPELILPLYGALPSEEQSRVFDPAPPGKRKVIL 321 (674)
T ss_pred HHHHHHhhhcccc---------------------------CcceeeeecccCCHHHhhccccCCCCCcceEEE
Confidence 8886544322211 111256799999999999999888888888876
No 260
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.09 E-value=2.6e-09 Score=137.03 Aligned_cols=128 Identities=19% Similarity=0.115 Sum_probs=92.6
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000324 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i 1420 (1665)
.|+++|--.--.+.. . -+..+.||+|||+++.+|++..... +. .+-+++|+.-||.|-+..+.. +-..+|+
T Consensus 80 ~~~dvQlig~l~l~~--G-~iaEm~TGEGKTLvA~l~a~l~al~---G~--~v~vvT~neyLA~Rd~e~~~~-~~~~LGl 150 (796)
T PRK12906 80 RPFDVQIIGGIVLHE--G-NIAEMKTGEGKTLTATLPVYLNALT---GK--GVHVVTVNEYLSSRDATEMGE-LYRWLGL 150 (796)
T ss_pred CCchhHHHHHHHHhc--C-CcccccCCCCCcHHHHHHHHHHHHc---CC--CeEEEeccHHHHHhhHHHHHH-HHHhcCC
Confidence 455555554443333 2 3899999999999999999877776 23 688999999999999998874 4456799
Q ss_pred EEEEEeCCCccc-hhccCCCcEEEEChhhHHH-HHHh-h---hccccCCCccEEEeecccccC
Q 000324 1421 RVVELTGETAMD-LKLLEKGQIIISTPEKWDA-LSRR-W---KQRKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1421 ~v~~l~G~~~~~-~~~l~~~~IIV~TPe~l~~-l~r~-~---~~~~~l~~v~llViDEaH~l~ 1477 (1665)
+|+.++|+.+.. .+..-.++|+.+|...+-. ++|. . ..........+.||||+|.++
T Consensus 151 ~vg~i~~~~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiL 213 (796)
T PRK12906 151 TVGLNLNSMSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSIL 213 (796)
T ss_pred eEEEeCCCCCHHHHHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhee
Confidence 999999987665 3345578999999998732 3332 1 111223467888999999653
No 261
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.04 E-value=6.4e-08 Score=123.10 Aligned_cols=367 Identities=18% Similarity=0.132 Sum_probs=201.6
Q ss_pred CCCCHHHHHHHHHHHcC---------CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHH
Q 000324 494 TQLNRVQSRVYKSALSS---------ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~---------~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~ 564 (1665)
..++|+|.+.|.-++.. ..-+|++=..|+|||+...-.|...+.+++.... .-.+.+||+|. .|+.
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~----~~~k~lVV~P~-sLv~ 311 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKP----LINKPLVVAPS-SLVN 311 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccc----cccccEEEccH-HHHH
Confidence 47899999999866531 1236777778999999876666666666543211 11478999995 7889
Q ss_pred HHHHHHHHhhccCCcEEEEEECCCccc---Hh-------hhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccc
Q 000324 565 EVVGNLSNRLQMYDVKVRELSGDQTLT---RQ-------QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (1665)
Q Consensus 565 q~~~~~~~~~~~~gi~V~~ltGd~~~~---~~-------~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~ 634 (1665)
-+.++|.+++....+.+..+.|..... .. ..-.+.|++.+.|.+....+. .....++++|+||.|.
T Consensus 312 nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~----il~~~~glLVcDEGHr 387 (776)
T KOG0390|consen 312 NWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK----ILLIRPGLLVCDEGHR 387 (776)
T ss_pred HHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH----HhcCCCCeEEECCCCC
Confidence 999999998876567777777766530 00 112455778888876322332 2345689999999999
Q ss_pred cccCCchHHHHHHHHHHHHHhhccCCeeEEEEcccCC--ChHHHHHHHhccccCceEEecCCCccc----cceEEE--Ee
Q 000324 635 LHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP--NYEDVALFLRVNLEKGLFYFDNSYRPV----PLSQQY--IG 706 (1665)
Q Consensus 635 l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~--n~~dv~~~l~~~~~~~~~~f~~~~rpv----~l~~~~--~~ 706 (1665)
+-+...-.+.+ +.... -.|-|+||.|+= |..++-..|.... .+..--..+++-. .+...- ..
T Consensus 388 lkN~~s~~~ka--------L~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvr-P~~Lgs~~sf~k~~~~~i~~~~~~~~s 457 (776)
T KOG0390|consen 388 LKNSDSLTLKA--------LSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVR-PGFLGSISSFKKKFEIPILRGRDADAS 457 (776)
T ss_pred ccchhhHHHHH--------HHhcC-CCceEEeeCCcccccHHHHHHHHhhcC-hhhccchHHHHHHhhcccccccCCCcc
Confidence 86544322222 22233 345588899953 2333333333211 1111111111110 000000 00
Q ss_pred eecCchhHHHHHHHHHHHHHH--------HHHhC-CCeEEEEecChhHHHHHHHHHHHHh---------hh---------
Q 000324 707 IQVKKPLQRFQLMNDLCYEKV--------VAVAG-KHQVLIFVHSRKETAKTARAIRDTA---------LE--------- 759 (1665)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~i--------~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~---------~~--------- 759 (1665)
-.......+.+.|..++-..+ .+..+ ..-.+|||+....=..+...|.... ..
T Consensus 458 ~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~c 537 (776)
T KOG0390|consen 458 EEDREREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLC 537 (776)
T ss_pred hhhhhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHh
Confidence 000011222333333322222 12223 2356788876544333443333310 00
Q ss_pred -cccccc----------ccc-----------c--Cchh--HH--HHHh----hhhccc---------------cchhhhh
Q 000324 760 -NDTLGR----------FLK-----------E--DSVS--RE--ILQS----HTDMVK---------------SNDLKDL 792 (1665)
Q Consensus 760 -~~~l~~----------~~~-----------~--~~~~--~~--~l~~----~~~~~~---------------~~~l~~l 792 (1665)
...+.. +.. . ...+ .- .|.. ..+... -..+...
T Consensus 538 nhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~ 617 (776)
T KOG0390|consen 538 NHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRW 617 (776)
T ss_pred cCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhh
Confidence 000000 000 0 0000 00 0000 000000 1123333
Q ss_pred cCCcEEEecCCCCHHHHHHHHHHHhCCCC--C-eEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhc
Q 000324 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHV--Q-VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLG 869 (1665)
Q Consensus 793 l~~gv~~~Hagm~~~dR~~v~~~F~~g~i--~-VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~G 869 (1665)
..+.+..+||.|+..+|+.+.+.|.+..- . .|.+|-+.+.||||=+..-||..+..|||. .=.|.++
T Consensus 618 ~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa----------~d~QAma 687 (776)
T KOG0390|consen 618 RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPA----------VDQQAMA 687 (776)
T ss_pred cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCch----------hHHHHHH
Confidence 45678889999999999999999987543 3 566888999999999988888855555554 4789999
Q ss_pred ccCCCCCCCceEEEEEeCCC
Q 000324 870 RAGRPQYDSYGEGIIITGHS 889 (1665)
Q Consensus 870 RAGR~g~d~~G~~iil~~~~ 889 (1665)
||=|+|.-+.-..|.+.+..
T Consensus 688 R~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 688 RAWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred HhccCCCcceEEEEEeecCC
Confidence 99999976666666666653
No 262
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.02 E-value=5.4e-10 Score=105.42 Aligned_cols=72 Identities=32% Similarity=0.570 Sum_probs=65.4
Q ss_pred CCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCC
Q 000324 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (1665)
Q Consensus 794 ~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (1665)
..++..+||+|+..+|..+++.|.+|...|||+|+++++|+|+|.+..||. ++++. +..+|.||+||+||
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~----~~~~~------~~~~~~Q~~gR~~R 80 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVII----YDLPW------SPASYIQRIGRAGR 80 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEE----eCCCC------CHHHHHHhhccccc
Confidence 467889999999999999999999999999999999999999999888887 66543 88899999999999
Q ss_pred CC
Q 000324 874 PQ 875 (1665)
Q Consensus 874 ~g 875 (1665)
.|
T Consensus 81 ~g 82 (82)
T smart00490 81 AG 82 (82)
T ss_pred CC
Confidence 65
No 263
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.02 E-value=2.9e-08 Score=132.20 Aligned_cols=81 Identities=16% Similarity=0.238 Sum_probs=62.4
Q ss_pred CCCHHHHHHHHH---HHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHH-HHHHHHhcC
Q 000324 1341 HFNPIQTQVFTV---LYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY-RDWEIKFGQ 1416 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~---ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~-~~~~~~~~~ 1416 (1665)
.++|-|.+.... .+..+..+++.|+||+|||++|++|++... ... ++||++||++|+.|++ +++. .+++
T Consensus 245 e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~----~~~--~vvI~t~T~~Lq~Ql~~~~i~-~l~~ 317 (820)
T PRK07246 245 EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS----DQR--QIIVSVPTKILQDQIMAEEVK-AIQE 317 (820)
T ss_pred ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc----CCC--cEEEEeCcHHHHHHHHHHHHH-HHHH
Confidence 589999984444 445667799999999999999999988643 123 8999999999999995 5555 6666
Q ss_pred CCCcEEEEEeCC
Q 000324 1417 GLGMRVVELTGE 1428 (1665)
Q Consensus 1417 ~~~i~v~~l~G~ 1428 (1665)
..++++..+.|+
T Consensus 318 ~~~~~~~~~kg~ 329 (820)
T PRK07246 318 VFHIDCHSLKGP 329 (820)
T ss_pred hcCCcEEEEECC
Confidence 667777665553
No 264
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.99 E-value=1.7e-07 Score=109.89 Aligned_cols=154 Identities=19% Similarity=0.208 Sum_probs=99.5
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000324 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1665)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (1665)
+..|-|+|.+-+.-+++.+..+++.-.-|-|||..| ++|...... ..-+++|+|- +|-..+++.+.+
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQA-laIA~yyra-----------EwplliVcPA-svrftWa~al~r 262 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQA-LAIARYYRA-----------EWPLLIVCPA-SVRFTWAKALNR 262 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHH-HHHHHHHhh-----------cCcEEEEecH-HHhHHHHHHHHH
Confidence 346779999999999999888999999999999988 455554433 1248889995 344456666666
Q ss_pred hhccCCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHH
Q 000324 573 RLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVR 652 (1665)
Q Consensus 573 ~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~ 652 (1665)
++.... .+..+.+....-...-....|.|.+.+.+..+-.... -...++||+||.|.|-+.+......++.-
T Consensus 263 ~lps~~-pi~vv~~~~D~~~~~~t~~~v~ivSye~ls~l~~~l~----~~~~~vvI~DEsH~Lk~sktkr~Ka~~dl--- 334 (689)
T KOG1000|consen 263 FLPSIH-PIFVVDKSSDPLPDVCTSNTVAIVSYEQLSLLHDILK----KEKYRVVIFDESHMLKDSKTKRTKAATDL--- 334 (689)
T ss_pred hccccc-ceEEEecccCCccccccCCeEEEEEHHHHHHHHHHHh----cccceEEEEechhhhhccchhhhhhhhhH---
Confidence 665332 2444444333222112234588888887654433322 22368999999999987543333333321
Q ss_pred HHhhccCCeeEEEEcccCC
Q 000324 653 QIETTKEHIRLVGLSATLP 671 (1665)
Q Consensus 653 ~~~~~~~~~riV~lSATl~ 671 (1665)
...-.++|+||.|..
T Consensus 335 ----lk~akhvILLSGTPa 349 (689)
T KOG1000|consen 335 ----LKVAKHVILLSGTPA 349 (689)
T ss_pred ----HHHhhheEEecCCcc
Confidence 234567899999953
No 265
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=98.97 E-value=2e-08 Score=129.69 Aligned_cols=273 Identities=16% Similarity=0.211 Sum_probs=175.6
Q ss_pred CHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEE
Q 000324 1343 NPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRV 1422 (1665)
Q Consensus 1343 ~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v 1422 (1665)
...+.+.+.++-+ +..++|++.||+|||.-.---||....... +..++++--|.|--|-.++++....-+...|-.|
T Consensus 175 ~~~r~~Il~~i~~-~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~--~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~V 251 (924)
T KOG0920|consen 175 YKMRDTILDAIEE-NQVVVISGETGCGKTTQVPQFILDEAIESG--AACNIICTQPRRISAISVAERVAKERGESLGEEV 251 (924)
T ss_pred HHHHHHHHHHHHh-CceEEEeCCCCCCchhhhhHHHHHHHHhcC--CCCeEEecCCchHHHHHHHHHHHHHhccccCCee
Confidence 4455555655544 677999999999999987777777766544 3348999999999999999888766665556555
Q ss_pred EEEeCCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccc--cCCCCchhHHHHHHHHHHHHhhcCC
Q 000324 1423 VELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHL--IGGQGGPVLEVIVSRMRYIASQVEN 1500 (1665)
Q Consensus 1423 ~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~--l~~~~g~~~e~~~srl~~i~~~~~~ 1500 (1665)
+.-.+-.+ +.-....+.+||.|.+...+. ....+.++..+|+||+|. +..+. ++--++.+... .+
T Consensus 252 GYqvrl~~---~~s~~t~L~fcTtGvLLr~L~---~~~~l~~vthiivDEVHER~i~~Df------lLi~lk~lL~~-~p 318 (924)
T KOG0920|consen 252 GYQVRLES---KRSRETRLLFCTTGVLLRRLQ---SDPTLSGVTHIIVDEVHERSINTDF------LLILLKDLLPR-NP 318 (924)
T ss_pred eEEEeeec---ccCCceeEEEecHHHHHHHhc---cCcccccCceeeeeeEEEccCCccc------HHHHHHHHhhh-CC
Confidence 44333222 112346899999998776554 366789999999999994 33344 44444444433 57
Q ss_pred CCeEEEEcccCCChHHHHHHhcccCCcEEecCCCCCccceEEEEe-------ecccchhhHH----------------HH
Q 000324 1501 KIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQ-------GVDITNFEAR----------------MQ 1557 (1665)
Q Consensus 1501 ~~riI~lSATl~n~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~-------~~~~~~~~~~----------------~~ 1557 (1665)
+.++|+||||+ |++.+..++|..+ ++......- |+..++. .+........ ..
T Consensus 319 ~LkvILMSAT~-dae~fs~YF~~~p--vi~i~grtf--pV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (924)
T KOG0920|consen 319 DLKVILMSATL-DAELFSDYFGGCP--VITIPGRTF--PVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEP 393 (924)
T ss_pred CceEEEeeeec-chHHHHHHhCCCc--eEeecCCCc--chHHHHHHHHHHHhcccccccccccccccCccccccchhccc
Confidence 99999999998 5888999998432 222221111 1111110 0000000000 00
Q ss_pred hcChhHHHHHHHHhc---CCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcc
Q 000324 1558 AMTKPTFTAIVQHAK---NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRH 1634 (1665)
Q Consensus 1558 ~~~k~~~~~i~~~l~---~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~ 1634 (1665)
.+.......+..++. ..+.+|||.|.-.....+...|...+...+ ..++
T Consensus 394 ~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~----------------------------~~~~ 445 (924)
T KOG0920|consen 394 EIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFAD----------------------------SLKF 445 (924)
T ss_pred cccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhcccccc----------------------------ccce
Confidence 122233334444432 345699999999999999988854332211 1223
Q ss_pred cEEEEcCCCCHHHHHHHHHHHhcCCceEEE
Q 000324 1635 GVGYLHEGLNKTDQEVVSALFEAGKIKICY 1664 (1665)
Q Consensus 1635 gI~~~H~~m~~~dR~~v~~~F~~G~i~VLV 1664 (1665)
-|-.+|+.|+..+++.|....-.|.-+|++
T Consensus 446 ~ilplHs~~~s~eQ~~VF~~pp~g~RKIIl 475 (924)
T KOG0920|consen 446 AILPLHSSIPSEEQQAVFKRPPKGTRKIIL 475 (924)
T ss_pred EEEeccccCChHHHHHhcCCCCCCcchhhh
Confidence 478899999999999999988888877765
No 266
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.97 E-value=1.3e-07 Score=119.75 Aligned_cols=303 Identities=14% Similarity=0.159 Sum_probs=161.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEECCCcc
Q 000324 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590 (1665)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~ 590 (1665)
+...+|.||.|||||.+..-.+-..+. ..+.++++|+-+++|+.+...+|+...- .|.....-.++..+
T Consensus 49 ~~V~vVRSpMGTGKTtaLi~wLk~~l~----------~~~~~VLvVShRrSL~~sL~~rf~~~~l-~gFv~Y~d~~~~~i 117 (824)
T PF02399_consen 49 RGVLVVRSPMGTGKTTALIRWLKDALK----------NPDKSVLVVSHRRSLTKSLAERFKKAGL-SGFVNYLDSDDYII 117 (824)
T ss_pred CCeEEEECCCCCCcHHHHHHHHHHhcc----------CCCCeEEEEEhHHHHHHHHHHHHhhcCC-Ccceeeeccccccc
Confidence 455789999999999865443322221 1356899999999999999999976421 12222211122222
Q ss_pred cHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc-CCchHH---HHHHHHHHHHHhhccCCeeEEEE
Q 000324 591 TRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVL---ESIVARTVRQIETTKEHIRLVGL 666 (1665)
Q Consensus 591 ~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~l---e~iv~r~~~~~~~~~~~~riV~l 666 (1665)
.. ...+-++++.+ +|-|... ..+.++++|||||+-.+.. -+.+.+ +.+...+... .....++|++
T Consensus 118 ~~---~~~~rLivqId---SL~R~~~--~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~l---I~~ak~VI~~ 186 (824)
T PF02399_consen 118 DG---RPYDRLIVQID---SLHRLDG--SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKEL---IRNAKTVIVM 186 (824)
T ss_pred cc---cccCeEEEEeh---hhhhccc--ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHH---HHhCCeEEEe
Confidence 11 12445555555 5555443 4577799999999975533 122222 2222222222 2345688999
Q ss_pred cccCCChHHHHHHHh-ccccCceEEecCCCccccceEEEE---------------eeecCc--------------hhHHH
Q 000324 667 SATLPNYEDVALFLR-VNLEKGLFYFDNSYRPVPLSQQYI---------------GIQVKK--------------PLQRF 716 (1665)
Q Consensus 667 SATl~n~~dv~~~l~-~~~~~~~~~f~~~~rpv~l~~~~~---------------~~~~~~--------------~~~~~ 716 (1665)
-||+.+ ..-+|+. ..|...+.++.++|........-. ..+... .....
T Consensus 187 DA~ln~--~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (824)
T PF02399_consen 187 DADLND--QTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAI 264 (824)
T ss_pred cCCCCH--HHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCcccccccc
Confidence 999964 2333332 223344444444332211111000 000000 00000
Q ss_pred HHHHHHHHHHHHHH-hCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCC
Q 000324 717 QLMNDLCYEKVVAV-AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPY 795 (1665)
Q Consensus 717 ~~~~~~~~~~i~~~-~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~ 795 (1665)
..-....+..+... ..++.+-||++|...+..+++...... .
T Consensus 265 ~~~~~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~-------------------------------------~ 307 (824)
T PF02399_consen 265 SNDETTFFSELLARLNAGKNICVFSSTVSFAEIVARFCARFT-------------------------------------K 307 (824)
T ss_pred ccchhhHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcC-------------------------------------C
Confidence 00001123333333 347788899988888777776655431 2
Q ss_pred cEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceE--EEEecccccCCCCCCcccCCHHHHHhhhcccCC
Q 000324 796 GFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHT--VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (1665)
Q Consensus 796 gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~--vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (1665)
.|.++++.-... .++. =+..+|++=|+++..|+++-... -+.-+-. ....| .+..++.||+||.-.
T Consensus 308 ~Vl~l~s~~~~~---dv~~---W~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk--~~~~g----pd~~s~~Q~lgRvR~ 375 (824)
T PF02399_consen 308 KVLVLNSTDKLE---DVES---WKKYDVVIYTPVITVGLSFEEKHFDSMFAYVK--PMSYG----PDMVSVYQMLGRVRS 375 (824)
T ss_pred eEEEEcCCCCcc---cccc---ccceeEEEEeceEEEEeccchhhceEEEEEec--CCCCC----CcHHHHHHHHHHHHh
Confidence 244555544433 2222 35689999999999999986431 1222111 11111 256789999999977
Q ss_pred CCCCCceEEEEEeCCC
Q 000324 874 PQYDSYGEGIIITGHS 889 (1665)
Q Consensus 874 ~g~d~~G~~iil~~~~ 889 (1665)
.. ..+.++.++..
T Consensus 376 l~---~~ei~v~~d~~ 388 (824)
T PF02399_consen 376 LL---DNEIYVYIDAS 388 (824)
T ss_pred hc---cCeEEEEEecc
Confidence 64 45666666553
No 267
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=98.97 E-value=1e-09 Score=127.75 Aligned_cols=262 Identities=14% Similarity=0.251 Sum_probs=158.5
Q ss_pred CCCCCHHHHHHHHHHHcCC--CcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcC
Q 000324 1339 FKHFNPIQTQVFTVLYNTD--DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~~~--dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~ 1416 (1665)
-+.++|+|..++..++.++ .+-+|+.|.|+|||++..-|+.. -++ ++|+++.+---+.|+...++ .+..
T Consensus 300 st~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t------ikK--~clvLcts~VSVeQWkqQfk-~wst 370 (776)
T KOG1123|consen 300 STQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT------IKK--SCLVLCTSAVSVEQWKQQFK-QWST 370 (776)
T ss_pred ccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee------ecc--cEEEEecCccCHHHHHHHHH-hhcc
Confidence 4678999999999998533 35799999999999987665531 223 89999999999999988888 7777
Q ss_pred CCCcEEEEEeCCCccchhccCCCcEEEEChhhHHHHH-Hhhhccc-----cCCCccEEEeecccccCCCCchhHHHHHHH
Q 000324 1417 GLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALS-RRWKQRK-----YVQQVSLFIIDELHLIGGQGGPVLEVIVSR 1490 (1665)
Q Consensus 1417 ~~~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~-r~~~~~~-----~l~~v~llViDEaH~l~~~~g~~~e~~~sr 1490 (1665)
...-.++.+|++.... .-.++.|+|+|-.++..-- |.|...+ .-+..+++|+||+|.+... .++.+++-
T Consensus 371 i~d~~i~rFTsd~Ke~--~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~---MFRRVlsi 445 (776)
T KOG1123|consen 371 IQDDQICRFTSDAKER--FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAK---MFRRVLSI 445 (776)
T ss_pred cCccceEEeecccccc--CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHH---HHHHHHHH
Confidence 6667788999876543 2346789999987664311 1111111 1246799999999998532 23333332
Q ss_pred HHHHHhhcCCCCeEEEEcccCCChHH--------------HHHHhcccCCcEE-ecC--CCCCccceEEEEeecccchhh
Q 000324 1491 MRYIASQVENKIRIVALSTSLANAKD--------------LGEWIGATSHGLF-NFP--PGVRPVPLEIHIQGVDITNFE 1553 (1665)
Q Consensus 1491 l~~i~~~~~~~~riI~lSATl~n~~d--------------l~~wl~~~~~~~~-~f~--~~~rpv~l~i~i~~~~~~~~~ 1553 (1665)
+. ++ --+||+|||-..+| =|.|+...+.+.+ ++. .-+-|..-+.+-.... ....
T Consensus 446 v~---aH-----cKLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~-~~t~ 516 (776)
T KOG1123|consen 446 VQ---AH-----CKLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLR-ENTR 516 (776)
T ss_pred HH---HH-----hhccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHh-hhhh
Confidence 22 22 24899999965432 2456655443322 111 0001110000000000 0011
Q ss_pred H--HHHhcChhHHHH----HHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHH
Q 000324 1554 A--RMQAMTKPTFTA----IVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEM 1627 (1665)
Q Consensus 1554 ~--~~~~~~k~~~~~----i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~ 1627 (1665)
. .+..|+...+.+ |.-|-..+.++|||..+.-.....|.
T Consensus 517 kr~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAi----------------------------------- 561 (776)
T KOG1123|consen 517 KRMLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAI----------------------------------- 561 (776)
T ss_pred hhheeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHH-----------------------------------
Confidence 1 112233333322 22333566778888877665555553
Q ss_pred HHHHhcccEEEEcCCCCHHHHHHHHHHHhcC-CceEE
Q 000324 1628 LKATLRHGVGYLHEGLNKTDQEVVSALFEAG-KIKIC 1663 (1665)
Q Consensus 1628 L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G-~i~VL 1663 (1665)
+.|-.+++|..++.+|..|++.|+-+ .++.+
T Consensus 562 -----kl~KpfIYG~Tsq~ERm~ILqnFq~n~~vNTI 593 (776)
T KOG1123|consen 562 -----KLGKPFIYGPTSQNERMKILQNFQTNPKVNTI 593 (776)
T ss_pred -----HcCCceEECCCchhHHHHHHHhcccCCccceE
Confidence 33456899999999999999999864 44433
No 268
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.92 E-value=6.4e-09 Score=119.68 Aligned_cols=168 Identities=15% Similarity=0.166 Sum_probs=140.8
Q ss_pred CCHHHHHHHHHhcCCCCCHHHHHHHhcCCccCCCCcCChhHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHcCCCC
Q 000324 1008 ISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKL 1087 (1665)
Q Consensus 1008 i~~~t~~~~~~~l~~~~~~~~ll~~~s~s~Ef~~i~~R~~E~~~l~~l~~~~~~~~~~~~~~~~~K~~~Llqa~is~~~~ 1087 (1665)
|.+-||.+|...+....+..+||.+||.|.||..+. | ..|..-.--|||.||.|.+-
T Consensus 227 vh~vT~~~f~~~~~~SlTlDelLslfasskElt~~~----------------p-------k~pk~~~ekll~dhlnr~~s 283 (610)
T COG5407 227 VHFVTMEMFYERIDGSLTLDELLSLFASSKELTRMN----------------P-------KGPKCTLEKLLGDHLNRARS 283 (610)
T ss_pred eeeeeHHHHHHhhcccchHHHHHHHHhhhHHHHHhC----------------C-------CCCchhHHHHHHHHHhHhhc
Confidence 667789999998888899999999999999986551 1 12333455699999999877
Q ss_pred CCCcchhhHHHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHcccCCC-CCcccccCCCCHHHHHHHHhCCC-Cc
Q 000324 1088 EGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSV-QTPLRQFNGIPNEILMKLEKKDF-AW 1165 (1665)
Q Consensus 1088 ~~~~l~~D~~~i~~~a~rl~~a~~ei~~~~g~~~~a~~~l~L~k~i~~~~W~~-~~pL~Q~~~i~~~~~~~l~~~~~-~~ 1165 (1665)
..|. ...|..++.-|+.|+.+|+...+.+..+...+++.|+|+|++.-+ ..|+.|+|+...+-++++--+.| ++
T Consensus 284 ~~fn----~~ri~s~~~~ll~aLL~ia~~F~f~~~~~g~~n~~q~iVqAiPld~~f~ilQlp~~d~E~~~~~s~r~I~~~ 359 (610)
T COG5407 284 VEFN----EYRIKSNVEGLLGALLRIASNFAFPLKECGKENKGQYIVQAIPLDHLFRILQLPRSDVEYAQRVSLRLIEGM 359 (610)
T ss_pred ccch----heehhhhhHHHHHHHHHHHhhccCCchhhccchhhheeeEeccCCCCchhhcccchhHHHHHHhhhhhhhhh
Confidence 6555 567889999999999999999999999999999999999999886 68999999999998888776666 67
Q ss_pred hhhccCChHHHhhhhcCc--hhhHHHHHHHhcCCcceEE
Q 000324 1166 ERYYDLSPQELGELIRFP--KMGRTLHKFVHQFPKLILA 1202 (1665)
Q Consensus 1166 ~~l~~l~~~el~~ll~~~--~~~~~i~~~~~~~P~l~l~ 1202 (1665)
..+..|.+++.++.+++- ...+.+.+.++.+|++.+-
T Consensus 360 ~~~~sL~~~~~g~vl~n~~~~~l~e~~~va~gIPr~~~~ 398 (610)
T COG5407 360 KAIGSLIAKRYGNVLKNLVVLELMEIQAVADGIPRYFLL 398 (610)
T ss_pred hhHhhHHHHHHhhhhhhHHHHHHHHHHHHhcCCCceEEE
Confidence 788889999999998753 3457889999999998873
No 269
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=98.92 E-value=9.7e-08 Score=127.26 Aligned_cols=152 Identities=17% Similarity=0.144 Sum_probs=99.1
Q ss_pred CCCHHHHHHHHHHH---cCCCcEEEECCCCChHHHHHHHHHHHHHHhh-cCCCCeEEEEEcccHHHHHHHHHHHHHHhcC
Q 000324 1341 HFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKA-SETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll---~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~-~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~ 1416 (1665)
.++|+|.+.+..++ ..+.+.|++-..|.|||+.++.. +..+... ...+ .+|||||. .++.++.+.+. +|..
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIal-L~~L~~~~~~~g--p~LIVvP~-SlL~nW~~Ei~-kw~p 243 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISL-LGYLHEYRGITG--PHMVVAPK-STLGNWMNEIR-RFCP 243 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHH-HHHHHHhcCCCC--CEEEEeCh-HHHHHHHHHHH-HHCC
Confidence 68899999998765 34556899999999999987444 3334331 2233 68999996 77788999888 5553
Q ss_pred CCCcEEEEEeCCCccchh------ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHH
Q 000324 1417 GLGMRVVELTGETAMDLK------LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSR 1490 (1665)
Q Consensus 1417 ~~~i~v~~l~G~~~~~~~------~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~sr 1490 (1665)
..++..++|....... .....+|+|+|.+.+........ --+.++||+||||++-......
T Consensus 244 --~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L~----k~~W~~VIvDEAHrIKN~~Skl------- 310 (1033)
T PLN03142 244 --VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTALK----RFSWRYIIIDEAHRIKNENSLL------- 310 (1033)
T ss_pred --CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHhc----cCCCCEEEEcCccccCCHHHHH-------
Confidence 4678888886543211 12345899999988754322211 1256899999999996543211
Q ss_pred HHHHHhhcCCCCeEEEEcccCC
Q 000324 1491 MRYIASQVENKIRIVALSTSLA 1512 (1665)
Q Consensus 1491 l~~i~~~~~~~~riI~lSATl~ 1512 (1665)
......+.... .++||+|+-
T Consensus 311 -skalr~L~a~~-RLLLTGTPl 330 (1033)
T PLN03142 311 -SKTMRLFSTNY-RLLITGTPL 330 (1033)
T ss_pred -HHHHHHhhcCc-EEEEecCCC
Confidence 11112223333 478888874
No 270
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.78 E-value=1.5e-07 Score=113.69 Aligned_cols=265 Identities=17% Similarity=0.194 Sum_probs=169.7
Q ss_pred HHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhh-cCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEE
Q 000324 1345 IQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA-SETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVV 1423 (1665)
Q Consensus 1345 iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~-~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~ 1423 (1665)
+-.+.+.++-. +.-++|.+.||||||.- +|=. |... ..+++.++-+--|.|--|..+..+..+.++..+|..|+
T Consensus 269 ykdell~av~e-~QVLiI~GeTGSGKTTQ--iPQy--L~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVG 343 (902)
T KOG0923|consen 269 YKDELLKAVKE-HQVLIIVGETGSGKTTQ--IPQY--LYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVG 343 (902)
T ss_pred hHHHHHHHHHh-CcEEEEEcCCCCCcccc--ccHH--HHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccccccc
Confidence 33444444433 55578999999999984 3322 2221 12333358889999999999998888777655554443
Q ss_pred EEe--CCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCC
Q 000324 1424 ELT--GETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENK 1501 (1665)
Q Consensus 1424 ~l~--G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~ 1501 (1665)
.-. -+.+. +..-|=+.|-|.|. |.+.....+....++||||||-=. -.-..++.-++.|... .+.
T Consensus 344 YsIRFEdcTS-----ekTvlKYMTDGmLl---REfL~epdLasYSViiiDEAHERT----L~TDILfgLvKDIar~-Rpd 410 (902)
T KOG0923|consen 344 YSIRFEDCTS-----EKTVLKYMTDGMLL---REFLSEPDLASYSVIIVDEAHERT----LHTDILFGLVKDIARF-RPD 410 (902)
T ss_pred eEEEeccccC-----cceeeeeecchhHH---HHHhccccccceeEEEeehhhhhh----hhhhHHHHHHHHHHhh-CCc
Confidence 211 11111 23456788988765 444456678899999999999321 1122255556666544 578
Q ss_pred CeEEEEcccCCChHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcChhHHHHHHH-H-hcCCCCEEE
Q 000324 1502 IRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQ-H-AKNEKPALV 1579 (1665)
Q Consensus 1502 ~riI~lSATl~n~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~-~-l~~~~~~IV 1579 (1665)
.+++..|||+ +++.+..+++.. .+|+++. |..|+.++....+..++..- ++..+++ | -.+.+-+||
T Consensus 411 LKllIsSAT~-DAekFS~fFDda--pIF~iPG--RRyPVdi~Yt~~PEAdYldA-------ai~tVlqIH~tqp~GDILV 478 (902)
T KOG0923|consen 411 LKLLISSATM-DAEKFSAFFDDA--PIFRIPG--RRYPVDIFYTKAPEADYLDA-------AIVTVLQIHLTQPLGDILV 478 (902)
T ss_pred ceEEeecccc-CHHHHHHhccCC--cEEeccC--cccceeeecccCCchhHHHH-------HHhhheeeEeccCCccEEE
Confidence 9999999998 888999999765 4777665 55566676655544443321 1122221 1 134566999
Q ss_pred EeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCC
Q 000324 1580 FVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGK 1659 (1665)
Q Consensus 1580 Fv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~ 1659 (1665)
|..-....+.+...|...+..-+... ...-|..+|++||...+..|.+---.|.
T Consensus 479 FltGQeEIEt~~e~l~~~~~~LGski--------------------------~eliv~PiYaNLPselQakIFePtP~ga 532 (902)
T KOG0923|consen 479 FLTGQEEIETVKENLKERCRRLGSKI--------------------------RELIVLPIYANLPSELQAKIFEPTPPGA 532 (902)
T ss_pred EeccHHHHHHHHHHHHHHHHHhcccc--------------------------ceEEEeeccccCChHHHHhhcCCCCCCc
Confidence 99999988877777754332211110 1123688999999999999998888888
Q ss_pred ceEEEC
Q 000324 1660 IKICYR 1665 (1665)
Q Consensus 1660 i~VLVC 1665 (1665)
-+|+++
T Consensus 533 RKVVLA 538 (902)
T KOG0923|consen 533 RKVVLA 538 (902)
T ss_pred eeEEEe
Confidence 888763
No 271
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.76 E-value=1.1e-07 Score=122.23 Aligned_cols=323 Identities=21% Similarity=0.259 Sum_probs=189.1
Q ss_pred CCCCHHHHHHHHHHHc---CCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 494 TQLNRVQSRVYKSALS---SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l~---~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
.+|+.+|-+-++.++. .+.|+|+.-.-|-|||+.- ++.|..+.....-.| -.|+|+|.-.+. .+.+.|
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqt-i~fl~~l~~~~~~~g-------pflvvvplst~~-~W~~ef 439 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQT-ITFLSYLFHSLQIHG-------PFLVVVPLSTIT-AWEREF 439 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHH-HHHHHHHHHhhhccC-------CeEEEeehhhhH-HHHHHH
Confidence 6899999998887654 3678999999999999754 233333333221112 357788986654 455566
Q ss_pred HHhhccCCcEEEEEECCCcccHhh------------hccccEEEeChhhHHHHHhhcCCCccccc--eeEEEEecccccc
Q 000324 571 SNRLQMYDVKVRELSGDQTLTRQQ------------IEETQIIVTTPEKWDIITRKSGDRTYTQL--VKLLIIDEIHLLH 636 (1665)
Q Consensus 571 ~~~~~~~gi~V~~ltGd~~~~~~~------------~~~~~IiV~TPekld~l~r~~~~~~~l~~--v~liIiDEaH~l~ 636 (1665)
..+. .+++..++|+.....-. .-..++++||.|. ++.-. ..++. ..+++|||||.|-
T Consensus 440 ~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~---~LkDk---~~L~~i~w~~~~vDeahrLk 510 (1373)
T KOG0384|consen 440 ETWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEI---VLKDK---AELSKIPWRYLLVDEAHRLK 510 (1373)
T ss_pred HHHh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHH---HhccH---hhhccCCcceeeecHHhhcC
Confidence 6544 57889999976532210 0147899999995 32221 22332 4789999999997
Q ss_pred cCCchHHHHHHHHHHHHHhhccCCeeEEEEcccC-CC-hHHHHHHHhccccCceEE--------ec-----------CCC
Q 000324 637 DNRGPVLESIVARTVRQIETTKEHIRLVGLSATL-PN-YEDVALFLRVNLEKGLFY--------FD-----------NSY 695 (1665)
Q Consensus 637 d~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl-~n-~~dv~~~l~~~~~~~~~~--------f~-----------~~~ 695 (1665)
+.-...++.+ .. ...+-| ++++.|. .| .+++...+..-. .+-|. |+ ...
T Consensus 511 N~~~~l~~~l-~~-------f~~~~r-llitgTPlQNsikEL~sLl~Fl~-P~kf~~~~~f~~~~~~~~e~~~~~L~~~L 580 (1373)
T KOG0384|consen 511 NDESKLYESL-NQ-------FKMNHR-LLITGTPLQNSLKELWSLLHFLM-PGKFDSWDEFLEEFDEETEEQVRKLQQIL 580 (1373)
T ss_pred chHHHHHHHH-HH-------hcccce-eeecCCCccccHHHHHHHhcccC-CCCCCcHHHHHHhhcchhHHHHHHHHHHh
Confidence 5433333331 11 122334 5666663 33 556665553211 00000 00 000
Q ss_pred cc--------------ccceEEEEeeecCch------------------------hHHHHHHHH----------------
Q 000324 696 RP--------------VPLSQQYIGIQVKKP------------------------LQRFQLMND---------------- 721 (1665)
Q Consensus 696 rp--------------v~l~~~~~~~~~~~~------------------------~~~~~~~~~---------------- 721 (1665)
+| -|-...++.+....- ...++.|.+
T Consensus 581 ~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee 660 (1373)
T KOG0384|consen 581 KPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEE 660 (1373)
T ss_pred hHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHH
Confidence 11 011112222111100 000111110
Q ss_pred ------------HH-------------HHHHHHH--hCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhH
Q 000324 722 ------------LC-------------YEKVVAV--AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSR 774 (1665)
Q Consensus 722 ------------~~-------------~~~i~~~--~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~ 774 (1665)
.. .++++.. .++++||||..-.+--.-++.+|..++
T Consensus 661 ~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~----------------- 723 (1373)
T KOG0384|consen 661 KILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRG----------------- 723 (1373)
T ss_pred HHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcC-----------------
Confidence 01 1222221 136788888766666556666665543
Q ss_pred HHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCC---CCCeEEeccccccccCCCceEEEEecccccCC
Q 000324 775 EILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDG---HVQVLVSTATLAWGVNLPAHTVIIKGTQIYNP 851 (1665)
Q Consensus 775 ~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g---~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~ 851 (1665)
+.+--+-|++..+-|+..++.|... ..-.|+||.+.+-||||-+.+-||-++.-|||
T Consensus 724 --------------------ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNP 783 (1373)
T KOG0384|consen 724 --------------------YPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNP 783 (1373)
T ss_pred --------------------CcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCc
Confidence 2233347999999999999999753 45689999999999999987777765555655
Q ss_pred CCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcH
Q 000324 852 EKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (1665)
Q Consensus 852 ~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~ 891 (1665)
. .=+|-.-||-|-|.-+.-.+|.+++....
T Consensus 784 Q----------NDLQAqARaHRIGQkk~VnVYRLVTk~Tv 813 (1373)
T KOG0384|consen 784 Q----------NDLQAQARAHRIGQKKHVNVYRLVTKNTV 813 (1373)
T ss_pred c----------hHHHHHHHHHhhcccceEEEEEEecCCch
Confidence 5 46888889999887777888999888653
No 272
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.75 E-value=4.4e-08 Score=115.47 Aligned_cols=304 Identities=8% Similarity=-0.041 Sum_probs=187.7
Q ss_pred hHHHHHhcC--CCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHH
Q 000324 1330 PLYEALYQG--FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (1665)
Q Consensus 1330 ~~~~~l~~~--f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~ 1407 (1665)
+....+|.+ -..+..+|..++..+-.|. |+++.-.|.+||.+|+.++....+... +.. ..+|+.|+++++....
T Consensus 273 E~~~~~~~~~~~E~~~~~~~~~~~~~~~G~-~~~~~~~~~~GK~~~~~~~s~~~~~~~-~~s--~~~~~~~~~~~~~~~~ 348 (1034)
T KOG4150|consen 273 ESIRSLLNKNTGESGIAISLELLKFASEGR-ADGGNEARQAGKGTCPTSGSRKFQTLC-HAT--NSLLPSEMVEHLRNGS 348 (1034)
T ss_pred HHHHHHHhcccccchhhhhHHHHhhhhhcc-cccccchhhcCCccCcccchhhhhhcC-ccc--ceecchhHHHHhhccC
Confidence 455566665 4578899999999987755 599999999999999999988777663 344 7899999999998755
Q ss_pred HHHHHHhcCCC---CcEEEEEeCCCccchh--ccCCCcEEEEChhhHHH--HHHhhhccccCCCccEEEeecccccCCCC
Q 000324 1408 RDWEIKFGQGL---GMRVVELTGETAMDLK--LLEKGQIIISTPEKWDA--LSRRWKQRKYVQQVSLFIIDELHLIGGQG 1480 (1665)
Q Consensus 1408 ~~~~~~~~~~~---~i~v~~l~G~~~~~~~--~l~~~~IIV~TPe~l~~--l~r~~~~~~~l~~v~llViDEaH~l~~~~ 1480 (1665)
+-+.-.+.... +--|....|++....+ ...+.+++.+.|..... +-.....+..+-...++++||+|.+....
T Consensus 349 ~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~ 428 (1034)
T KOG4150|consen 349 KGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPT 428 (1034)
T ss_pred CceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecch
Confidence 43321111110 1112233343333322 22456899999988754 22332334456678899999999998877
Q ss_pred chhHHHHHHHHHHHHhhc--CCCCeEEEEcccCCChH-HHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHH
Q 000324 1481 GPVLEVIVSRMRYIASQV--ENKIRIVALSTSLANAK-DLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQ 1557 (1665)
Q Consensus 1481 g~~~e~~~srl~~i~~~~--~~~~riI~lSATl~n~~-dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~ 1557 (1665)
|......+.++..+..-+ ..+.+++-.|||+.+.. ...+..|...-.+.....+.....+-+.......+.....-.
T Consensus 429 ~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~ 508 (1034)
T KOG4150|consen 429 KALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKS 508 (1034)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhh
Confidence 777777777766665433 35799999999998754 455555555444444332211111111111111111111111
Q ss_pred hcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEE
Q 000324 1558 AMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (1665)
Q Consensus 1558 ~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~ 1637 (1665)
.........+.+.+..+-++|.||++|+-|+.+-......+.... .. +--.|.
T Consensus 509 ~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~-----------------------~~----LV~~i~ 561 (1034)
T KOG4150|consen 509 SKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETA-----------------------PH----LVEAIT 561 (1034)
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhh-----------------------HH----HHHHHH
Confidence 111222223344445678899999999999887654432111110 01 122356
Q ss_pred EEcCCCCHHHHHHHHHHHhcCCceEEE
Q 000324 1638 YLHEGLNKTDQEVVSALFEAGKIKICY 1664 (1665)
Q Consensus 1638 ~~H~~m~~~dR~~v~~~F~~G~i~VLV 1664 (1665)
.|.||.+.+||+.++...-.|++.-+|
T Consensus 562 SYRGGY~A~DRRKIE~~~F~G~L~giI 588 (1034)
T KOG4150|consen 562 SYRGGYIAEDRRKIESDLFGGKLCGII 588 (1034)
T ss_pred hhcCccchhhHHHHHHHhhCCeeeEEE
Confidence 788999999999999998888877665
No 273
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.74 E-value=2.9e-07 Score=111.24 Aligned_cols=265 Identities=18% Similarity=0.208 Sum_probs=163.9
Q ss_pred HHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhh--cCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEE
Q 000324 1345 IQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA--SETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRV 1422 (1665)
Q Consensus 1345 iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~--~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v 1422 (1665)
.+.+.+..+-. ++-|+|++.||||||.-. | +.|... ..++ .+-+--|.|.-|..++++....++-.+|..|
T Consensus 360 ~R~~ll~~ir~-n~vvvivgETGSGKTTQl--~--QyL~edGY~~~G--mIGcTQPRRvAAiSVAkrVa~EM~~~lG~~V 432 (1042)
T KOG0924|consen 360 CRDQLLSVIRE-NQVVVIVGETGSGKTTQL--A--QYLYEDGYADNG--MIGCTQPRRVAAISVAKRVAEEMGVTLGDTV 432 (1042)
T ss_pred HHHHHHHHHhh-CcEEEEEecCCCCchhhh--H--HHHHhcccccCC--eeeecCchHHHHHHHHHHHHHHhCCcccccc
Confidence 44455555543 555889999999999853 2 222222 2344 6778899999999999998877765555554
Q ss_pred EEEe--CCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCC
Q 000324 1423 VELT--GETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVEN 1500 (1665)
Q Consensus 1423 ~~l~--G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~ 1500 (1665)
+.-. -+.+. +..-|=..|-+.|..- .-....+.+...||+||||.=.-. ...++--++...+. ..
T Consensus 433 GYsIRFEdvT~-----~~T~IkymTDGiLLrE---sL~d~~L~kYSviImDEAHERslN----tDilfGllk~~lar-Rr 499 (1042)
T KOG0924|consen 433 GYSIRFEDVTS-----EDTKIKYMTDGILLRE---SLKDRDLDKYSVIIMDEAHERSLN----TDILFGLLKKVLAR-RR 499 (1042)
T ss_pred ceEEEeeecCC-----CceeEEEeccchHHHH---HhhhhhhhheeEEEechhhhcccc----hHHHHHHHHHHHHh-hc
Confidence 3321 11111 2345778888876532 223456788999999999943211 11233333333332 45
Q ss_pred CCeEEEEcccCCChHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcChhHHHHHHHHhc-CCCCEEE
Q 000324 1501 KIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAK-NEKPALV 1579 (1665)
Q Consensus 1501 ~~riI~lSATl~n~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l~-~~~~~IV 1579 (1665)
+.++|..|||+ |++.++.++|.- ..|+++. |..|+++.....+..++.. +..+. .+.-|+. +.+-+||
T Consensus 500 dlKliVtSATm-~a~kf~nfFgn~--p~f~IpG--RTyPV~~~~~k~p~eDYVe---aavkq---~v~Ihl~~~~GdilI 568 (1042)
T KOG0924|consen 500 DLKLIVTSATM-DAQKFSNFFGNC--PQFTIPG--RTYPVEIMYTKTPVEDYVE---AAVKQ---AVQIHLSGPPGDILI 568 (1042)
T ss_pred cceEEEeeccc-cHHHHHHHhCCC--ceeeecC--CccceEEEeccCchHHHHH---HHHhh---heEeeccCCCCCEEE
Confidence 89999999998 899999999932 2455444 6667776665544443332 22221 1222222 3356999
Q ss_pred EeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCC
Q 000324 1580 FVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGK 1659 (1665)
Q Consensus 1580 Fv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~ 1659 (1665)
|++.+...+-++..+...+..-.. .......|-.+++.|+..-+..+.+.--.|.
T Consensus 569 fmtGqediE~t~~~i~~~l~ql~~-------------------------~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~v 623 (1042)
T KOG0924|consen 569 FMTGQEDIECTCDIIKEKLEQLDS-------------------------APTTDLAVLPIYSQLPADLQAKIFQKAEGGV 623 (1042)
T ss_pred ecCCCcchhHHHHHHHHHHHhhhc-------------------------CCCCceEEEeehhhCchhhhhhhcccCCCCc
Confidence 999988887777666432211000 0112334788999999999999988888888
Q ss_pred ceEEEC
Q 000324 1660 IKICYR 1665 (1665)
Q Consensus 1660 i~VLVC 1665 (1665)
-+|+|+
T Consensus 624 RK~IvA 629 (1042)
T KOG0924|consen 624 RKCIVA 629 (1042)
T ss_pred eeEEEe
Confidence 888874
No 274
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.72 E-value=1e-07 Score=97.20 Aligned_cols=135 Identities=16% Similarity=0.228 Sum_probs=75.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEECCCcc
Q 000324 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590 (1665)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~ 590 (1665)
++--++-..+|+|||.-.+--++++.... +.++|+++|||.++.++.+.++.. ++++. +.-..
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~----------~~rvLvL~PTRvva~em~~aL~~~----~~~~~--t~~~~- 66 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKR----------RLRVLVLAPTRVVAEEMYEALKGL----PVRFH--TNARM- 66 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHT----------T--EEEEESSHHHHHHHHHHTTTS----SEEEE--STTSS-
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHc----------cCeEEEecccHHHHHHHHHHHhcC----CcccC--ceeee-
Confidence 34467889999999986655555544432 458999999999999998887542 33332 21111
Q ss_pred cHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEcccC
Q 000324 591 TRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670 (1665)
Q Consensus 591 ~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl 670 (1665)
.....+.-|-|+|...+-...-.. ....++++||+||+|.... .--.....+... . .....++|.+|||.
T Consensus 67 -~~~~g~~~i~vMc~at~~~~~~~p---~~~~~yd~II~DEcH~~Dp----~sIA~rg~l~~~-~-~~g~~~~i~mTATP 136 (148)
T PF07652_consen 67 -RTHFGSSIIDVMCHATYGHFLLNP---CRLKNYDVIIMDECHFTDP----TSIAARGYLREL-A-ESGEAKVIFMTATP 136 (148)
T ss_dssp -----SSSSEEEEEHHHHHHHHHTS---SCTTS-SEEEECTTT--SH----HHHHHHHHHHHH-H-HTTS-EEEEEESS-
T ss_pred -ccccCCCcccccccHHHHHHhcCc---ccccCccEEEEeccccCCH----HHHhhheeHHHh-h-hccCeeEEEEeCCC
Confidence 122345667788888653322222 3457899999999997531 111111222221 1 23357899999998
Q ss_pred CC
Q 000324 671 PN 672 (1665)
Q Consensus 671 ~n 672 (1665)
|-
T Consensus 137 PG 138 (148)
T PF07652_consen 137 PG 138 (148)
T ss_dssp TT
T ss_pred CC
Confidence 74
No 275
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.68 E-value=1.2e-07 Score=120.67 Aligned_cols=69 Identities=20% Similarity=0.259 Sum_probs=53.1
Q ss_pred cCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhc-CC--CCcEEEEEeC
Q 000324 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG-QG--LGMRVVELTG 1427 (1665)
Q Consensus 1355 ~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~-~~--~~i~v~~l~G 1427 (1665)
..+..+++.||||+|||++|++|++...... .+. ++||++||++|+.|++++|. .+. +. ..++++.+.|
T Consensus 14 ~~~~~lliEA~TGtGKTlAYLlpal~~~~~~-~~~--rvlIstpT~~Lq~Ql~~~l~-~l~~~~l~~~i~~~~lkG 85 (636)
T TIGR03117 14 RQKRIGMLEASTGVGKTLAMIMAALTMLKER-PDQ--KIAIAVPTLALMGQLWSELE-RLTAEGLAGPVQAGFFPG 85 (636)
T ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc-cCc--eEEEECCcHHHHHHHHHHHH-HHHHhhcCCCeeEEEEEC
Confidence 3466699999999999999999999877642 233 99999999999999999888 555 32 2345555443
No 276
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.67 E-value=2.3e-06 Score=110.87 Aligned_cols=111 Identities=16% Similarity=0.171 Sum_probs=80.9
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEEC-CCc-cc
Q 000324 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSG-DQT-LT 591 (1665)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V~~ltG-d~~-~~ 591 (1665)
-|.-+.||-|||+++.+|+.-....+ ..+-+|+..--||.-=++.....+..+|++|++... +.. ..
T Consensus 185 ~IAEM~TGEGKTLvAtlp~yLnAL~G-----------kgVHvVTVNDYLA~RDaewmgply~fLGLsvg~i~~~~~~~~~ 253 (1112)
T PRK12901 185 KIAEMATGEGKTLVATLPVYLNALTG-----------NGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVDCIDKHQPNSEA 253 (1112)
T ss_pred ceeeecCCCCchhHHHHHHHHHHHcC-----------CCcEEEEechhhhhccHHHHHHHHHHhCCceeecCCCCCCHHH
Confidence 57889999999999999987665543 235667777788887777888888889999998865 322 23
Q ss_pred HhhhccccEEEeChhhH--HHHHhhcC---CCccccceeEEEEeccccc
Q 000324 592 RQQIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (1665)
Q Consensus 592 ~~~~~~~~IiV~TPekl--d~l~r~~~---~~~~l~~v~liIiDEaH~l 635 (1665)
++..-.++|.++|..-| |.|..+.. +......+.+.||||||.+
T Consensus 254 rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSI 302 (1112)
T PRK12901 254 RRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSV 302 (1112)
T ss_pred HHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhh
Confidence 34456899999999874 65544432 2234455789999999965
No 277
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.64 E-value=4.7e-06 Score=103.54 Aligned_cols=362 Identities=18% Similarity=0.192 Sum_probs=188.7
Q ss_pred CCCCCHHHHHHHHHHHc---CCCcEEEEccCCCchHHHH--HHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHH
Q 000324 493 MTQLNRVQSRVYKSALS---SADNILLCAPTGAGKTNVA--VLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (1665)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~---~~~nvlv~APTGsGKT~~a--~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~ 567 (1665)
+..|.++|+..+..+++ .+.--|+.-.-|-|||... .|+.|++-. +. ...+|||||. .++.|+.
T Consensus 203 ~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~--k~--------~~paLIVCP~-Tii~qW~ 271 (923)
T KOG0387|consen 203 WSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSG--KL--------TKPALIVCPA-TIIHQWM 271 (923)
T ss_pred HHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcc--cc--------cCceEEEccH-HHHHHHH
Confidence 35788999999987653 3344688889999999643 333333211 11 1368999996 5678899
Q ss_pred HHHHHhhccCCcEEEEEECCCcc----------------cHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEec
Q 000324 568 GNLSNRLQMYDVKVRELSGDQTL----------------TRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDE 631 (1665)
Q Consensus 568 ~~~~~~~~~~gi~V~~ltGd~~~----------------~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDE 631 (1665)
.+|+.++.+ .+|.+++|..+- .+......+|+++|.+.+ |..++...-....++|+||
T Consensus 272 ~E~~~w~p~--~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~----r~~~d~l~~~~W~y~ILDE 345 (923)
T KOG0387|consen 272 KEFQTWWPP--FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGF----RIQGDDLLGILWDYVILDE 345 (923)
T ss_pred HHHHHhCcc--eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhh----cccCcccccccccEEEecC
Confidence 999998764 578888775541 112233567999999864 2222222233468999999
Q ss_pred ccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEcccC-CC-hHHHHHHHhc-cccC--ceEEecCCCccccceE-EEE
Q 000324 632 IHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL-PN-YEDVALFLRV-NLEK--GLFYFDNSYRPVPLSQ-QYI 705 (1665)
Q Consensus 632 aH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl-~n-~~dv~~~l~~-~~~~--~~~~f~~~~rpv~l~~-~~~ 705 (1665)
.|.+-+.-.... ++ . .+.+..-| |+||.|. .| ..++...+.. .|.. ..-+|...|. .|+.. .+.
T Consensus 346 GH~IrNpns~is---la--c---kki~T~~R-iILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~-~pI~~Ggya 415 (923)
T KOG0387|consen 346 GHRIRNPNSKIS---LA--C---KKIRTVHR-IILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFE-HPINRGGYA 415 (923)
T ss_pred cccccCCccHHH---HH--H---Hhccccce-EEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhh-hheeccccC
Confidence 999965322211 11 1 12233344 5667663 33 3333332221 1110 0111211111 11110 000
Q ss_pred eeecC---chhHHHHHHHHHHHHHHH--------H-H-hCCCeEEEEecChhHHHHHHHHHHHH-hh----h--------
Q 000324 706 GIQVK---KPLQRFQLMNDLCYEKVV--------A-V-AGKHQVLIFVHSRKETAKTARAIRDT-AL----E-------- 759 (1665)
Q Consensus 706 ~~~~~---~~~~~~~~~~~~~~~~i~--------~-~-~~~~~vLVFv~sr~~~~~~a~~L~~~-~~----~-------- 759 (1665)
..+.. ...+....+...+-..++ . . .++.-.+|||.=...-.++++.+... .. +
T Consensus 416 NAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~G 495 (923)
T KOG0387|consen 416 NASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSG 495 (923)
T ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceec
Confidence 00000 000111111111111111 1 1 12456899998665555555544321 00 0
Q ss_pred -------cccccccccc---------------CchhHHHHHhhhh-------cc----c----cchhhhhcC----CcEE
Q 000324 760 -------NDTLGRFLKE---------------DSVSREILQSHTD-------MV----K----SNDLKDLLP----YGFA 798 (1665)
Q Consensus 760 -------~~~l~~~~~~---------------~~~~~~~l~~~~~-------~~----~----~~~l~~ll~----~gv~ 798 (1665)
++....+-+. .+...+++..... .+ + -..|..++. +.+.
T Consensus 496 i~iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysyl 575 (923)
T KOG0387|consen 496 IDILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYL 575 (923)
T ss_pred hHHHHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEE
Confidence 0000000000 0111111111100 00 0 112333333 3344
Q ss_pred EecCCCCHHHHHHHHHHHhCCCC-C-eEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCC
Q 000324 799 IHHAGMTRGDRQLVEDLFGDGHV-Q-VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876 (1665)
Q Consensus 799 ~~Hagm~~~dR~~v~~~F~~g~i-~-VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~ 876 (1665)
-.-|..+...|....+.|.++.. . .|++|.+.+-|+||-...-||-++.-|||. .=.|-.-||=|-|.
T Consensus 576 RmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPS----------tD~QAreRawRiGQ 645 (923)
T KOG0387|consen 576 RMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPS----------TDNQARERAWRIGQ 645 (923)
T ss_pred EecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCc----------cchHHHHHHHhhcC
Confidence 45788899999999999997653 3 578999999999999877777644444443 45677788888776
Q ss_pred CCceEEEEEeCCCcH
Q 000324 877 DSYGEGIIITGHSEL 891 (1665)
Q Consensus 877 d~~G~~iil~~~~~~ 891 (1665)
.+.-.+|.+.+....
T Consensus 646 kkdV~VYRL~t~gTI 660 (923)
T KOG0387|consen 646 KKDVVVYRLMTAGTI 660 (923)
T ss_pred ccceEEEEEecCCcH
Confidence 555666777776543
No 278
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=7.1e-07 Score=109.83 Aligned_cols=223 Identities=21% Similarity=0.240 Sum_probs=137.4
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHHH-HHh--hcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccc
Q 000324 1356 TDDNVLVAAPTGSGKTICSEFAILRN-HQK--ASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD 1432 (1665)
Q Consensus 1356 ~~dnvlv~ApTGSGKTl~a~l~il~~-l~~--~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~ 1432 (1665)
.++-||||+.||||||.-----+... +.. ....+ .+=|--|.|--|-.+.++....++. ++.+|....- .+
T Consensus 270 ~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~g--mIGITqPRRVAaiamAkRVa~EL~~-~~~eVsYqIR---fd 343 (1172)
T KOG0926|consen 270 ENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPG--MIGITQPRRVAAIAMAKRVAFELGV-LGSEVSYQIR---FD 343 (1172)
T ss_pred cCCeEEEecCCCCCccccchHHHHHcccCCccCCCCC--eeeecCchHHHHHHHHHHHHHHhcc-CccceeEEEE---ec
Confidence 36669999999999997421111111 001 01122 5667889998888888877766665 3444433221 11
Q ss_pred hhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCC------CCeEEE
Q 000324 1433 LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVEN------KIRIVA 1506 (1665)
Q Consensus 1433 ~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~------~~riI~ 1506 (1665)
...-....|-+.|-|.|..-+ .....+.....||+||||.=. .....+--+++|+-.+...+.. +.++|.
T Consensus 344 ~ti~e~T~IkFMTDGVLLrEi---~~DflL~kYSvIIlDEAHERS-vnTDILiGmLSRiV~LR~k~~ke~~~~kpLKLII 419 (1172)
T KOG0926|consen 344 GTIGEDTSIKFMTDGVLLREI---ENDFLLTKYSVIILDEAHERS-VNTDILIGMLSRIVPLRQKYYKEQCQIKPLKLII 419 (1172)
T ss_pred cccCCCceeEEecchHHHHHH---HHhHhhhhceeEEechhhhcc-chHHHHHHHHHHHHHHHHHHhhhhcccCceeEEE
Confidence 122245689999999876433 345567889999999999432 1223344477887777665554 899999
Q ss_pred EcccCCChHHHHHHhcccCCcEEecCC-----CCCccceEEEEeecccchhhHHHHhcChhHHHHHHHHhcCCCCEEEEe
Q 000324 1507 LSTSLANAKDLGEWIGATSHGLFNFPP-----GVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFV 1581 (1665)
Q Consensus 1507 lSATl~n~~dl~~wl~~~~~~~~~f~~-----~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l~~~~~~IVFv 1581 (1665)
|||||- ..|+.+ ...+|...| ..|..|+.+|++.-...+|..... . ....|.+. .+.+.+||||
T Consensus 420 MSATLR-VsDFte-----nk~LFpi~pPlikVdARQfPVsIHF~krT~~DYi~eAf--r--Ktc~IH~k-LP~G~ILVFv 488 (1172)
T KOG0926|consen 420 MSATLR-VSDFTE-----NKRLFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAEAF--R--KTCKIHKK-LPPGGILVFV 488 (1172)
T ss_pred EeeeEE-eccccc-----CceecCCCCceeeeecccCceEEEeccCCCchHHHHHH--H--HHHHHhhc-CCCCcEEEEE
Confidence 999983 223321 122333333 337778888887655444433211 1 11123333 4667799999
Q ss_pred CchHHHHHHHHHHHHhcc
Q 000324 1582 PSRKYVRLTAVDLMTYSS 1599 (1665)
Q Consensus 1582 ~sr~~a~~la~~L~~~~~ 1599 (1665)
.....+..++..|.+...
T Consensus 489 TGQqEV~qL~~kLRK~~p 506 (1172)
T KOG0926|consen 489 TGQQEVDQLCEKLRKRFP 506 (1172)
T ss_pred eChHHHHHHHHHHHhhCc
Confidence 999999999999987643
No 279
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.58 E-value=7.6e-07 Score=115.14 Aligned_cols=198 Identities=16% Similarity=0.109 Sum_probs=122.1
Q ss_pred CCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchh------ccC
Q 000324 1364 APTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK------LLE 1437 (1665)
Q Consensus 1364 ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~------~l~ 1437 (1665)
+.+|||||.+|+-.+-..+.. ++ ++|+++|...|..|+.+.+++.|+. ..|+.++++.+...+ ...
T Consensus 167 ~~~GSGKTevyl~~i~~~l~~---Gk--~vLvLvPEi~lt~q~~~rl~~~f~~---~~v~~lhS~l~~~~R~~~w~~~~~ 238 (665)
T PRK14873 167 ALPGEDWARRLAAAAAATLRA---GR--GALVVVPDQRDVDRLEAALRALLGA---GDVAVLSAGLGPADRYRRWLAVLR 238 (665)
T ss_pred cCCCCcHHHHHHHHHHHHHHc---CC--eEEEEecchhhHHHHHHHHHHHcCC---CcEEEECCCCCHHHHHHHHHHHhC
Confidence 346999999998888777765 33 8999999999999999999988862 468889998876632 222
Q ss_pred -CCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccC--CCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh
Q 000324 1438 -KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG--GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA 1514 (1665)
Q Consensus 1438 -~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~--~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~ 1514 (1665)
.+.|||+|- ..-...+.++++|||||-|--. +..++.|.. ..+.....+ ..+..+|+-|||++ .
T Consensus 239 G~~~IViGtR---------SAvFaP~~~LgLIIvdEEhd~sykq~~~p~yha--RdvA~~Ra~-~~~~~lvLgSaTPS-l 305 (665)
T PRK14873 239 GQARVVVGTR---------SAVFAPVEDLGLVAIWDDGDDLLAEPRAPYPHA--REVALLRAH-QHGCALLIGGHART-A 305 (665)
T ss_pred CCCcEEEEcc---------eeEEeccCCCCEEEEEcCCchhhcCCCCCCccH--HHHHHHHHH-HcCCcEEEECCCCC-H
Confidence 358999992 2234468899999999999443 333444322 222222222 34788999999964 2
Q ss_pred HHHHHHhcccCCcEEecCCCC----CccceEEEEeecccchhh----HHHHhcChhHHHHHHHHhcCCCCEEEEeCchHH
Q 000324 1515 KDLGEWIGATSHGLFNFPPGV----RPVPLEIHIQGVDITNFE----ARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKY 1586 (1665)
Q Consensus 1515 ~dl~~wl~~~~~~~~~f~~~~----rpv~l~i~i~~~~~~~~~----~~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~ 1586 (1665)
+. |.......+....... ...| .+++.+....... .....+.......+.+.+..+ ++|||+|.|--
T Consensus 306 es---~~~~~~g~~~~~~~~~~~~~~~~P-~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~g-qvll~lnRrGy 380 (665)
T PRK14873 306 EA---QALVESGWAHDLVAPRPVVRARAP-RVRALGDSGLALERDPAARAARLPSLAFRAARDALEHG-PVLVQVPRRGY 380 (665)
T ss_pred HH---HHHHhcCcceeeccccccccCCCC-eEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcC-cEEEEecCCCC
Confidence 22 2211111111111110 1111 2333322110000 000125667788888887877 99999998874
Q ss_pred H
Q 000324 1587 V 1587 (1665)
Q Consensus 1587 a 1587 (1665)
+
T Consensus 381 a 381 (665)
T PRK14873 381 V 381 (665)
T ss_pred C
Confidence 4
No 280
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=98.58 E-value=4e-06 Score=108.96 Aligned_cols=69 Identities=17% Similarity=0.200 Sum_probs=57.6
Q ss_pred hHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcC
Q 000324 1562 PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHE 1641 (1665)
Q Consensus 1562 ~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~ 1641 (1665)
..+..+......+.++||||+|+++|+.++..|. ..+..+.++||
T Consensus 430 ~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~-----------------------------------~~gi~~~~lh~ 474 (655)
T TIGR00631 430 DLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLK-----------------------------------ELGIKVRYLHS 474 (655)
T ss_pred HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHh-----------------------------------hhccceeeeeC
Confidence 3444555555677889999999999999997772 23456889999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1642 GLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1642 ~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
++++.+|..+++.|+.|.++||||
T Consensus 475 ~~~~~eR~~~l~~fr~G~i~VLV~ 498 (655)
T TIGR00631 475 EIDTLERVEIIRDLRLGEFDVLVG 498 (655)
T ss_pred CCCHHHHHHHHHHHhcCCceEEEE
Confidence 999999999999999999999987
No 281
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.58 E-value=2.6e-07 Score=110.34 Aligned_cols=167 Identities=22% Similarity=0.235 Sum_probs=96.1
Q ss_pred HHHHHHHHHHc------------CCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000324 499 VQSRVYKSALS------------SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (1665)
Q Consensus 499 iQ~~~i~~~l~------------~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~ 566 (1665)
+|.+++..++. ....+|++-.+|+|||..++..+. .+....... ...++|||+|. ++..++
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~~-----~~~~~LIv~P~-~l~~~W 73 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFPQR-----GEKKTLIVVPS-SLLSQW 73 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCTTS-----S-S-EEEEE-T-TTHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhccccc-----cccceeEeecc-chhhhh
Confidence 46666665432 335799999999999988865554 333321110 12259999999 888999
Q ss_pred HHHHHHhhccCCcEEEEEECCCc---ccHhhhccccEEEeChhhHHHHHhhc-CCCccccceeEEEEecccccccCCchH
Q 000324 567 VGNLSNRLQMYDVKVRELSGDQT---LTRQQIEETQIIVTTPEKWDIITRKS-GDRTYTQLVKLLIIDEIHLLHDNRGPV 642 (1665)
Q Consensus 567 ~~~~~~~~~~~gi~V~~ltGd~~---~~~~~~~~~~IiV~TPekld~l~r~~-~~~~~l~~v~liIiDEaH~l~d~rg~~ 642 (1665)
..++.+.+.+...++..+.|+.. .........+++|+|.+.+....... .....--..++||+||+|.+.+.....
T Consensus 74 ~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~ 153 (299)
T PF00176_consen 74 KEEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKR 153 (299)
T ss_dssp HHHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHH
T ss_pred hhhhccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccccccccc
Confidence 99999988655678888888761 11223457899999999754110111 100111237899999999996543333
Q ss_pred HHHHHHHHHHHHhhccCCeeEEEEcccCC-C-hHHHHHHHh
Q 000324 643 LESIVARTVRQIETTKEHIRLVGLSATLP-N-YEDVALFLR 681 (1665)
Q Consensus 643 le~iv~r~~~~~~~~~~~~riV~lSATl~-n-~~dv~~~l~ 681 (1665)
...+ .... ....++||||.- | +.|+...+.
T Consensus 154 ~~~l--------~~l~-~~~~~lLSgTP~~n~~~dl~~~l~ 185 (299)
T PF00176_consen 154 YKAL--------RKLR-ARYRWLLSGTPIQNSLEDLYSLLR 185 (299)
T ss_dssp HHHH--------HCCC-ECEEEEE-SS-SSSGSHHHHHHHH
T ss_pred cccc--------cccc-cceEEeeccccccccccccccchh
Confidence 3222 1222 556688999943 2 455555443
No 282
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.54 E-value=1.5e-06 Score=111.52 Aligned_cols=157 Identities=20% Similarity=0.266 Sum_probs=99.6
Q ss_pred CCCHHHHHHHHHH--HcCCC-cEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000324 495 QLNRVQSRVYKSA--LSSAD-NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~--l~~~~-nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (1665)
.|+.+|.+-+..+ ++.-+ +-|+|-.-|=|||+..+-.+.....+.+ .+......+-.++|||. .|+--+..+|.
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~--s~~~e~~~~PSLIVCPs-TLtGHW~~E~~ 1051 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRR--SESSEFNRLPSLIVCPS-TLTGHWKSEVK 1051 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhc--ccchhhccCCeEEECCc-hhhhHHHHHHH
Confidence 6788999988764 33322 6799999999999988655544444331 12222234447899996 78888999998
Q ss_pred HhhccCCcEEEEEECCCccc---HhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHH
Q 000324 572 NRLQMYDVKVRELSGDQTLT---RQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVA 648 (1665)
Q Consensus 572 ~~~~~~gi~V~~ltGd~~~~---~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~ 648 (1665)
+++.. ++|..++|.-... +.+.++++|||+.++.+ |+..+...-..+.+.|+||-|-+-+.+ +
T Consensus 1052 kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~----RnD~d~l~~~~wNYcVLDEGHVikN~k--------t 1117 (1549)
T KOG0392|consen 1052 KFFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVV----RNDVDYLIKIDWNYCVLDEGHVIKNSK--------T 1117 (1549)
T ss_pred Hhcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHH----HHHHHHHHhcccceEEecCcceecchH--------H
Confidence 87765 6788888865433 23456789999999864 111100001125789999999886533 1
Q ss_pred HHHHHHhhccCCeeEEEEccc
Q 000324 649 RTVRQIETTKEHIRLVGLSAT 669 (1665)
Q Consensus 649 r~~~~~~~~~~~~riV~lSAT 669 (1665)
++...+.+...+.| +.||.|
T Consensus 1118 kl~kavkqL~a~hR-LILSGT 1137 (1549)
T KOG0392|consen 1118 KLTKAVKQLRANHR-LILSGT 1137 (1549)
T ss_pred HHHHHHHHHhhcce-EEeeCC
Confidence 22233334444555 556777
No 283
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.54 E-value=5.8e-07 Score=91.80 Aligned_cols=135 Identities=17% Similarity=0.225 Sum_probs=77.4
Q ss_pred CcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchhccC
Q 000324 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLE 1437 (1665)
Q Consensus 1358 dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~l~ 1437 (1665)
+-.++-..+|+|||.-.+--+++.-.. .+. |+|+++|||.++..+.+.++ +..+..-+.-.. .....
T Consensus 5 ~~~~~d~hpGaGKTr~vlp~~~~~~i~--~~~--rvLvL~PTRvva~em~~aL~-------~~~~~~~t~~~~--~~~~g 71 (148)
T PF07652_consen 5 ELTVLDLHPGAGKTRRVLPEIVREAIK--RRL--RVLVLAPTRVVAEEMYEALK-------GLPVRFHTNARM--RTHFG 71 (148)
T ss_dssp EEEEEE--TTSSTTTTHHHHHHHHHHH--TT----EEEEESSHHHHHHHHHHTT-------TSSEEEESTTSS------S
T ss_pred ceeEEecCCCCCCcccccHHHHHHHHH--ccC--eEEEecccHHHHHHHHHHHh-------cCCcccCceeee--ccccC
Confidence 335788999999999766656654444 244 99999999999999998665 122222111111 11224
Q ss_pred CCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh
Q 000324 1438 KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA 1514 (1665)
Q Consensus 1438 ~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~ 1514 (1665)
+.-|-|.|-..+...+-. ...+.+.+++|+||||...... -.+...+..... .....+|.+|||+|-.
T Consensus 72 ~~~i~vMc~at~~~~~~~---p~~~~~yd~II~DEcH~~Dp~s----IA~rg~l~~~~~--~g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 72 SSIIDVMCHATYGHFLLN---PCRLKNYDVIIMDECHFTDPTS----IAARGYLRELAE--SGEAKVIFMTATPPGS 139 (148)
T ss_dssp SSSEEEEEHHHHHHHHHT---SSCTTS-SEEEECTTT--SHHH----HHHHHHHHHHHH--TTS-EEEEEESS-TT-
T ss_pred CCcccccccHHHHHHhcC---cccccCccEEEEeccccCCHHH----HhhheeHHHhhh--ccCeeEEEEeCCCCCC
Confidence 456788888876655443 3346899999999999864221 112223333322 2347899999998764
No 284
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.52 E-value=6.9e-07 Score=106.74 Aligned_cols=164 Identities=18% Similarity=0.185 Sum_probs=93.5
Q ss_pred HHHHHHHHHH------------cCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHH
Q 000324 1345 IQTQVFTVLY------------NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEI 1412 (1665)
Q Consensus 1345 iQ~qa~~~ll------------~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~ 1412 (1665)
+|.+++..++ .....++++-.+|+|||+.+...+..........+.-.+|||+|. .+..|+..++.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 4666666553 233568999999999999986665533333111111159999999 888999999994
Q ss_pred HhcCCCCcEEEEEeCCCc---cchhccCCCcEEEEChhhHHHHHHhhh-ccccCCCccEEEeecccccCCCCchhHHHHH
Q 000324 1413 KFGQGLGMRVVELTGETA---MDLKLLEKGQIIISTPEKWDALSRRWK-QRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488 (1665)
Q Consensus 1413 ~~~~~~~i~v~~l~G~~~---~~~~~l~~~~IIV~TPe~l~~l~r~~~-~~~~l~~v~llViDEaH~l~~~~g~~~e~~~ 1488 (1665)
+......++..+.|... .........+++|+|.+.+......+. ....-.+.++||+||+|.+.+.....+..+.
T Consensus 80 -~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~l~ 158 (299)
T PF00176_consen 80 -WFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKALR 158 (299)
T ss_dssp -HSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHHHHHHH
T ss_pred -ccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEeccccccccccccccccc
Confidence 44322468888888761 112345567999999998871100000 0001134899999999999654432222221
Q ss_pred HHHHHHHhhcCCCCeEEEEcccCCC--hHHHHH
Q 000324 1489 SRMRYIASQVENKIRIVALSTSLAN--AKDLGE 1519 (1665)
Q Consensus 1489 srl~~i~~~~~~~~riI~lSATl~n--~~dl~~ 1519 (1665)
.+. ....+++|||+.. ..|+..
T Consensus 159 --------~l~-~~~~~lLSgTP~~n~~~dl~~ 182 (299)
T PF00176_consen 159 --------KLR-ARYRWLLSGTPIQNSLEDLYS 182 (299)
T ss_dssp --------CCC-ECEEEEE-SS-SSSGSHHHHH
T ss_pred --------ccc-cceEEeecccccccccccccc
Confidence 223 5667889999754 345444
No 285
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.51 E-value=7.4e-06 Score=103.63 Aligned_cols=128 Identities=17% Similarity=0.097 Sum_probs=94.7
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000324 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i 1420 (1665)
.|+++|--..-.++.| -++.+.||+|||+++.+|++..... +. .+-+++|+.-||.|-++.+. .+-..+|+
T Consensus 78 r~ydvQlig~l~Ll~G---~VaEM~TGEGKTLvA~l~a~l~AL~---G~--~VhvvT~NdyLA~RDae~m~-~ly~~LGL 148 (764)
T PRK12326 78 RPFDVQLLGALRLLAG---DVIEMATGEGKTLAGAIAAAGYALQ---GR--RVHVITVNDYLARRDAEWMG-PLYEALGL 148 (764)
T ss_pred CcchHHHHHHHHHhCC---CcccccCCCCHHHHHHHHHHHHHHc---CC--CeEEEcCCHHHHHHHHHHHH-HHHHhcCC
Confidence 5667777666666653 3789999999999999999876655 33 68899999999999999877 44456899
Q ss_pred EEEEEeCCCccc-hhccCCCcEEEEChhhHHH-HHHh-h---hccccCCCccEEEeecccccC
Q 000324 1421 RVVELTGETAMD-LKLLEKGQIIISTPEKWDA-LSRR-W---KQRKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1421 ~v~~l~G~~~~~-~~~l~~~~IIV~TPe~l~~-l~r~-~---~~~~~l~~v~llViDEaH~l~ 1477 (1665)
+|+.++++.+.+ .+..-.+||+.+|...+-. ++|. . ........+.+.||||+|.++
T Consensus 149 svg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 149 TVGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred EEEEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 999999987765 3344578999999998621 2221 1 111233458899999999664
No 286
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.48 E-value=1e-06 Score=103.95 Aligned_cols=75 Identities=19% Similarity=0.203 Sum_probs=56.7
Q ss_pred CCCCCHHHHHHHHH---HHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000324 493 MTQLNRVQSRVYKS---ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (1665)
Q Consensus 493 ~~~l~~iQ~~~i~~---~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (1665)
|. ++|.|.+.+.. .+..++++++.||||+|||+++++|++..+...... ..+.+++|.++|.++..+....
T Consensus 7 y~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-----~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00489 7 YE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-----IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-----ccccceeEEeccHHHHHHHHHH
Confidence 54 49999995544 345567899999999999999999998776543211 0234899999999998887777
Q ss_pred HHHh
Q 000324 570 LSNR 573 (1665)
Q Consensus 570 ~~~~ 573 (1665)
+++.
T Consensus 81 l~~~ 84 (289)
T smart00489 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 6654
No 287
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.48 E-value=1e-06 Score=103.95 Aligned_cols=75 Identities=19% Similarity=0.203 Sum_probs=56.7
Q ss_pred CCCCCHHHHHHHHH---HHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000324 493 MTQLNRVQSRVYKS---ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (1665)
Q Consensus 493 ~~~l~~iQ~~~i~~---~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (1665)
|. ++|.|.+.+.. .+..++++++.||||+|||+++++|++..+...... ..+.+++|.++|.++..+....
T Consensus 7 y~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-----~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00488 7 YE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-----IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-----ccccceeEEeccHHHHHHHHHH
Confidence 54 49999995544 345567899999999999999999998776543211 0234899999999998887777
Q ss_pred HHHh
Q 000324 570 LSNR 573 (1665)
Q Consensus 570 ~~~~ 573 (1665)
+++.
T Consensus 81 l~~~ 84 (289)
T smart00488 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 6654
No 288
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.45 E-value=1.5e-06 Score=102.51 Aligned_cols=71 Identities=20% Similarity=0.271 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHH---cCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCC-CCeEEEEEcccHHHHHHHHHHHHH
Q 000324 1342 FNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASET-GVMRAVYIAPLEALAKERYRDWEI 1412 (1665)
Q Consensus 1342 ~~~iQ~qa~~~ll---~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~-~~~r~l~I~PtreLa~Q~~~~~~~ 1412 (1665)
++|.|.+....++ ..++++++.||||+|||+++++|++..+...... .+.+++|.++|..+..|....+++
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 5999999655543 3456799999999999999999999877653221 123799999999999998887764
No 289
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.45 E-value=1.5e-06 Score=102.51 Aligned_cols=71 Identities=20% Similarity=0.271 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHH---cCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCC-CCeEEEEEcccHHHHHHHHHHHHH
Q 000324 1342 FNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASET-GVMRAVYIAPLEALAKERYRDWEI 1412 (1665)
Q Consensus 1342 ~~~iQ~qa~~~ll---~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~-~~~r~l~I~PtreLa~Q~~~~~~~ 1412 (1665)
++|.|.+....++ ..++++++.||||+|||+++++|++..+...... .+.+++|.++|..+..|....+++
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 5999999655543 3456799999999999999999999877653221 123799999999999998887764
No 290
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.44 E-value=1.2e-05 Score=100.01 Aligned_cols=379 Identities=20% Similarity=0.216 Sum_probs=202.0
Q ss_pred CCCHHHHHHHHHH---HcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000324 495 QLNRVQSRVYKSA---LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~---l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (1665)
+|-++|.--+..+ ++.+=|.|+.-.-|-|||..+ ++.+..+.+... .+ .=+||||.-.| ..+.++|.
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQv-IaFlayLkq~g~-------~g-pHLVVvPsSTl-eNWlrEf~ 468 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQV-IAFLAYLKQIGN-------PG-PHLVVVPSSTL-ENWLREFA 468 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhHH-HHHHHHHHHcCC-------CC-CcEEEecchhH-HHHHHHHH
Confidence 4777887776653 455557899999999999754 333334433221 12 34778998776 44667787
Q ss_pred HhhccCCcEEEEEECCCcccHhh-------hccccEEEeChhhHHHHHhhcCCCccc--cceeEEEEecccccccCCchH
Q 000324 572 NRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYT--QLVKLLIIDEIHLLHDNRGPV 642 (1665)
Q Consensus 572 ~~~~~~gi~V~~ltGd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l--~~v~liIiDEaH~l~d~rg~~ 642 (1665)
+++. .++|..++|...-..+. ....+|+|||.... .....++.++ .++.++|+||.|.|-+.....
T Consensus 469 kwCP--sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la---~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeR 543 (941)
T KOG0389|consen 469 KWCP--SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLA---ASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSER 543 (941)
T ss_pred HhCC--ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecc---cCChHHHHHHHhccccEEEecchhhhhccchHH
Confidence 7765 57888888876433221 12689999998743 2222222333 346899999999997633222
Q ss_pred HHHHHHHHHHHHhhccCCeeEEEEccc-CCC-hHHHHHHHhccccCceEEecCCCccccceEEEEe----eec-----Cc
Q 000324 643 LESIVARTVRQIETTKEHIRLVGLSAT-LPN-YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIG----IQV-----KK 711 (1665)
Q Consensus 643 le~iv~r~~~~~~~~~~~~riV~lSAT-l~n-~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~----~~~-----~~ 711 (1665)
+..++ ..+.+.| ++|+.| |.| ..++-..|..-.. .+ |+.+......-..... -.+ ..
T Consensus 544 y~~LM--------~I~An~R-lLLTGTPLQNNL~ELiSLL~FvlP-~v--F~~~~~dl~~if~~k~~~d~d~e~~~l~qe 611 (941)
T KOG0389|consen 544 YKHLM--------SINANFR-LLLTGTPLQNNLKELISLLAFVLP-KV--FDSSMEDLDVIFKAKKTSDGDIENALLSQE 611 (941)
T ss_pred HHHhc--------cccccce-EEeeCCcccccHHHHHHHHHHHhh-Hh--hhccchHHHHHHhccCCccchhhHHHHHHH
Confidence 33322 2345556 556666 333 4444444432211 11 2221111000000000 000 00
Q ss_pred hhHHHHHHHH-H----HHHHHHHHhC-CCeEEEEecChhHHHHHHHHHHHHhh---hcc--c---cc-------------
Q 000324 712 PLQRFQLMND-L----CYEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTAL---END--T---LG------------- 764 (1665)
Q Consensus 712 ~~~~~~~~~~-~----~~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~---~~~--~---l~------------- 764 (1665)
...+...|.. . .-+.++...+ +.+.|.||.-.+.-..++..+.+... ... . ..
T Consensus 612 rIsrAK~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnH 691 (941)
T KOG0389|consen 612 RISRAKTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANH 691 (941)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcC
Confidence 1112222211 1 1223344444 55788888755544444444433220 000 0 00
Q ss_pred cccc------------------c---CchhHHHHHhh------------hh-----------------ccccchhhhhc-
Q 000324 765 RFLK------------------E---DSVSREILQSH------------TD-----------------MVKSNDLKDLL- 793 (1665)
Q Consensus 765 ~~~~------------------~---~~~~~~~l~~~------------~~-----------------~~~~~~l~~ll- 793 (1665)
.++. . .......+.+. +. ..+...|+.+|
T Consensus 692 PLL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp 771 (941)
T KOG0389|consen 692 PLLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLP 771 (941)
T ss_pred hhHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHH
Confidence 0000 0 00000000000 00 00122233332
Q ss_pred -----------------------------CCcEEEecCCCCHHHHHHHHHHHhCCC-C-CeEEeccccccccCCCceEEE
Q 000324 794 -----------------------------PYGFAIHHAGMTRGDRQLVEDLFGDGH-V-QVLVSTATLAWGVNLPAHTVI 842 (1665)
Q Consensus 794 -----------------------------~~gv~~~Hagm~~~dR~~v~~~F~~g~-i-~VLVaT~tla~GVdlP~v~vV 842 (1665)
.+++.-+-|...-.+|+.+.+.|...+ + -.|++|.+.+.|||+-+..+|
T Consensus 772 ~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~V 851 (941)
T KOG0389|consen 772 KIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTV 851 (941)
T ss_pred HHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceE
Confidence 234455678889999999999997543 4 358899999999999999999
Q ss_pred EecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcHHH-HHHhhcCCCccccchhH
Q 000324 843 IKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRY-YLSLMNQQLPIESQFVS 910 (1665)
Q Consensus 843 I~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~-y~~ll~~~~piES~l~~ 910 (1665)
|..+.-|+|-. =.|.--||-|.|..+.-.++.+.+.+..+. ...+-+..+-+|+.+.+
T Consensus 852 IihD~dFNP~d----------D~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~ 910 (941)
T KOG0389|consen 852 IIHDIDFNPYD----------DKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTE 910 (941)
T ss_pred EEeecCCCCcc----------cchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhcc
Confidence 88666666542 356666666666667778888888877654 44455666666666544
No 291
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.43 E-value=1.8e-05 Score=94.73 Aligned_cols=153 Identities=18% Similarity=0.190 Sum_probs=93.5
Q ss_pred CccEEEeecccccCCCCchhHHHHHHHHHHHHhh---cC---------------CCCeEEEEcccCCChHHHHHHhcccC
Q 000324 1464 QVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQ---VE---------------NKIRIVALSTSLANAKDLGEWIGATS 1525 (1665)
Q Consensus 1464 ~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~---~~---------------~~~riI~lSATl~n~~dl~~wl~~~~ 1525 (1665)
.=-++||||-|.-...-|..|.-=.+|=..+... +| ...|+|..|||+.+.+ +..--|...
T Consensus 331 ~d~Ll~IDESHvTvPQi~gMynGDrsRK~~LVeyGFRLPSAlDNRPL~feEf~~~~~q~i~VSATPg~~E-~e~s~~~vv 409 (663)
T COG0556 331 DDFLLFIDESHVTVPQIGGMYNGDRSRKQTLVEYGFRLPSALDNRPLKFEEFEAKIPQTIYVSATPGDYE-LEQSGGNVV 409 (663)
T ss_pred cceEEEEeccccchHhhhchhcccHHHHHHHHHhcCcCcccccCCCCCHHHHHHhcCCEEEEECCCChHH-HHhccCcee
Confidence 4468999999965543333443333333222211 11 3589999999987642 111111111
Q ss_pred CcEEecCCCCCccceEEEEeecccchhhHHHHhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcc
Q 000324 1526 HGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQK 1605 (1665)
Q Consensus 1526 ~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~ 1605 (1665)
..+ +.|..-.-| .+.+.... .-....+..|......+.+++|-+-|++-|+.++..|
T Consensus 410 eQi--IRPTGLlDP-~ievRp~~---------~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl----------- 466 (663)
T COG0556 410 EQI--IRPTGLLDP-EIEVRPTK---------GQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYL----------- 466 (663)
T ss_pred EEe--ecCCCCCCC-ceeeecCC---------CcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHH-----------
Confidence 111 111111001 11121110 0112345556666677889999999999999888777
Q ss_pred cccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEE
Q 000324 1606 SAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICY 1664 (1665)
Q Consensus 1606 ~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLV 1664 (1665)
.-++..|.|+|++...-+|..++...+.|.+.|||
T Consensus 467 ------------------------~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLV 501 (663)
T COG0556 467 ------------------------KELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLV 501 (663)
T ss_pred ------------------------HhcCceEEeeeccchHHHHHHHHHHHhcCCccEEE
Confidence 33677799999999999999999999999999998
No 292
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.39 E-value=2.3e-05 Score=102.76 Aligned_cols=69 Identities=14% Similarity=0.190 Sum_probs=57.5
Q ss_pred hHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcC
Q 000324 1562 PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHE 1641 (1665)
Q Consensus 1562 ~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~ 1641 (1665)
.....+......+.++||||+|+++|+.++..|. ..+..+.++||
T Consensus 434 ~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~-----------------------------------~~gi~~~~~h~ 478 (652)
T PRK05298 434 DLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLK-----------------------------------ELGIKVRYLHS 478 (652)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHh-----------------------------------hcceeEEEEEC
Confidence 3344555555677889999999999999998772 23456889999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1642 GLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1642 ~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
++++.+|..+++.|+.|.++||||
T Consensus 479 ~~~~~~R~~~l~~f~~g~i~vlV~ 502 (652)
T PRK05298 479 DIDTLERVEIIRDLRLGEFDVLVG 502 (652)
T ss_pred CCCHHHHHHHHHHHHcCCceEEEE
Confidence 999999999999999999999987
No 293
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.33 E-value=1.6e-05 Score=103.78 Aligned_cols=163 Identities=17% Similarity=0.137 Sum_probs=100.4
Q ss_pred CCHHHHHHHHHHHc----CC---CcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q 000324 1342 FNPIQTQVFTVLYN----TD---DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKF 1414 (1665)
Q Consensus 1342 ~~~iQ~qa~~~ll~----~~---dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~ 1414 (1665)
-..+|-+|+..+.. +. =-++--|.||+|||++=.= |+..+.. +..++|..|-.-.|.|--|+-..+++++
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR-ImyaLsd--~~~g~RfsiALGLRTLTLQTGda~r~rL 485 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR-AMYALRD--DKQGARFAIALGLRSLTLQTGHALKTRL 485 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH-HHHHhCC--CCCCceEEEEccccceeccchHHHHHhc
Confidence 35699999998764 11 1245569999999998533 3333443 3344589999999999999999888776
Q ss_pred cCCCCcEEEEEeCCCcc------------------------------------------------------chhccCCCc
Q 000324 1415 GQGLGMRVVELTGETAM------------------------------------------------------DLKLLEKGQ 1440 (1665)
Q Consensus 1415 ~~~~~i~v~~l~G~~~~------------------------------------------------------~~~~l~~~~ 1440 (1665)
+- .+-..+++.|+... ..+.+-.++
T Consensus 486 ~L-~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~ap 564 (1110)
T TIGR02562 486 NL-SDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAP 564 (1110)
T ss_pred CC-CccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCC
Confidence 52 12233333332100 001112458
Q ss_pred EEEEChhhHHHHHHhhhccccC-C----CccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh
Q 000324 1441 IIISTPEKWDALSRRWKQRKYV-Q----QVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA 1514 (1665)
Q Consensus 1441 IIV~TPe~l~~l~r~~~~~~~l-~----~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~ 1514 (1665)
++|||+.++....-..+..... . .-+.|||||+|.+.... -.++.++-..... -..+++++|||||..
T Consensus 565 v~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~----~~~L~rlL~w~~~--lG~~VlLmSATLP~~ 637 (1110)
T TIGR02562 565 VLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPED----LPALLRLVQLAGL--LGSRVLLSSATLPPA 637 (1110)
T ss_pred eEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHH----HHHHHHHHHHHHH--cCCCEEEEeCCCCHH
Confidence 9999999997765222221111 1 24689999999885322 2234444333333 367899999999984
No 294
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.30 E-value=0.00022 Score=87.22 Aligned_cols=302 Identities=15% Similarity=0.185 Sum_probs=181.7
Q ss_pred CCCcEEEEEcccHHHHHHHHHHHHHhhcc-------------CCcE-------EE-------------EEECCCc-----
Q 000324 548 HSNYKIVYVAPMKALVAEVVGNLSNRLQM-------------YDVK-------VR-------------ELSGDQT----- 589 (1665)
Q Consensus 548 ~~~~kil~iaP~raLa~q~~~~~~~~~~~-------------~gi~-------V~-------------~ltGd~~----- 589 (1665)
-..+||++++|+|..|-++++.+.+.+.. +|+. .. .+.|+..
T Consensus 35 ftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~Frl 114 (442)
T PF06862_consen 35 FTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRL 114 (442)
T ss_pred CCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEE
Confidence 35789999999999999999888776543 1200 00 0011100
Q ss_pred ---ccHh------hhccccEEEeChhhHHHHHh----hcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHH--
Q 000324 590 ---LTRQ------QIEETQIIVTTPEKWDIITR----KSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQI-- 654 (1665)
Q Consensus 590 ---~~~~------~~~~~~IiV~TPekld~l~r----~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~-- 654 (1665)
+++. ...++|||||+|=-+..+.. +..+..+++.|.++|+|.+|.+.=.--..+..++..+..+-
T Consensus 115 Gik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~ 194 (442)
T PF06862_consen 115 GIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKK 194 (442)
T ss_pred eEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCC
Confidence 0111 12368999999987755544 34566789999999999999875433334444444432110
Q ss_pred ---------------hhccCCeeEEEEcccCCChHHHHHHHhc--cccCceEEecCCC--------ccccceEEEEeeec
Q 000324 655 ---------------ETTKEHIRLVGLSATLPNYEDVALFLRV--NLEKGLFYFDNSY--------RPVPLSQQYIGIQV 709 (1665)
Q Consensus 655 ---------------~~~~~~~riV~lSATl~n~~dv~~~l~~--~~~~~~~~f~~~~--------rpv~l~~~~~~~~~ 709 (1665)
.....-.|.|++|+... ++ +...++. ....|...+...+ -.+++.|.|..++.
T Consensus 195 ~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~-pe-~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~ 272 (442)
T PF06862_consen 195 SHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQT-PE-INSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDC 272 (442)
T ss_pred CCCCCHHHHHHHHHcCcchheeEeEEecCCCC-HH-HHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecC
Confidence 11123468999999864 33 3333322 1112222222222 23567777777665
Q ss_pred Cch----hHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccc
Q 000324 710 KKP----LQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVK 785 (1665)
Q Consensus 710 ~~~----~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 785 (1665)
... ..++....+.++..+......+.+|||++|=-+=.++-..|+...
T Consensus 273 ~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~---------------------------- 324 (442)
T PF06862_consen 273 SSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKEN---------------------------- 324 (442)
T ss_pred CCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcC----------------------------
Confidence 443 334555555455555433346789999999888777777776322
Q ss_pred cchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEecc--ccccccCCCceEEEEecccccCCCCCCcccCCHHH
Q 000324 786 SNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTA--TLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLD 863 (1665)
Q Consensus 786 ~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~--tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~ 863 (1665)
..++..|.-.+..+-...-..|..|+.+||+-|- -.=+=..+.++..||- |.+|.. +-=..+
T Consensus 325 ---------~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viF----Y~~P~~---p~fY~E 388 (442)
T PF06862_consen 325 ---------ISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIF----YGPPEN---PQFYSE 388 (442)
T ss_pred ---------CeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEE----ECCCCC---hhHHHH
Confidence 1255668888889989999999999999999995 2234456677777887 888762 112345
Q ss_pred HHhhhcccCC-CCCCCceEEEEEeCCCcHHHHH
Q 000324 864 IMQMLGRAGR-PQYDSYGEGIIITGHSELRYYL 895 (1665)
Q Consensus 864 ~~Qr~GRAGR-~g~d~~G~~iil~~~~~~~~y~ 895 (1665)
++.|++.... .+....+.|.++++.-+.-.++
T Consensus 389 l~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LE 421 (442)
T PF06862_consen 389 LLNMLDESSGGEVDAADATVTVLYSKYDALRLE 421 (442)
T ss_pred HHhhhcccccccccccCceEEEEecHhHHHHHH
Confidence 5555554432 1122356788888765544333
No 295
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.22 E-value=2.6e-06 Score=110.19 Aligned_cols=129 Identities=18% Similarity=0.188 Sum_probs=90.9
Q ss_pred CCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcE
Q 000324 1342 FNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMR 1421 (1665)
Q Consensus 1342 ~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~ 1421 (1665)
++|+=.|.+-.+.-... -|+.+.||+|||+++.+|++..... +. .+-+++|+.-||.+-+..+. .+-..+|++
T Consensus 81 m~~ydVQliGg~~Lh~G-~iaEM~TGEGKTLvA~l~a~l~al~---G~--~VhvvT~ndyLA~RD~e~m~-~l~~~lGl~ 153 (913)
T PRK13103 81 MRHFDVQLIGGMTLHEG-KIAEMRTGEGKTLVGTLAVYLNALS---GK--GVHVVTVNDYLARRDANWMR-PLYEFLGLS 153 (913)
T ss_pred CCcchhHHHhhhHhccC-ccccccCCCCChHHHHHHHHHHHHc---CC--CEEEEeCCHHHHHHHHHHHH-HHhcccCCE
Confidence 33444444444322122 5899999999999999999866555 23 68899999999999998777 555568999
Q ss_pred EEEEeCCCccc-hhccCCCcEEEEChhhH--HHHHHhh---hccccCCCccEEEeecccccC
Q 000324 1422 VVELTGETAMD-LKLLEKGQIIISTPEKW--DALSRRW---KQRKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1422 v~~l~G~~~~~-~~~l~~~~IIV~TPe~l--~~l~r~~---~~~~~l~~v~llViDEaH~l~ 1477 (1665)
|++++|+.+.. .+..-.++|+++|...+ +.+..+. ........+.++||||+|.++
T Consensus 154 v~~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 154 VGIVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred EEEECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 99999987665 33444589999999886 2221111 112234678999999999764
No 296
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.19 E-value=0.00018 Score=97.63 Aligned_cols=138 Identities=17% Similarity=0.147 Sum_probs=82.8
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEECCCccc
Q 000324 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLT 591 (1665)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~ 591 (1665)
..-+|.=-||||||+.....+-..+ .. ...+++++|+-++.|-.|+.+.|+........ +. -......-
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~-~~--------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~-~~-~~~s~~~L 342 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLL-EL--------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFN-DP-KAESTSEL 342 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHH-hc--------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhh-cc-cccCHHHH
Confidence 3578899999999986644433333 22 23668999999999999999999986442211 11 11111111
Q ss_pred Hhhhc--cccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEccc
Q 000324 592 RQQIE--ETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (1665)
Q Consensus 592 ~~~~~--~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSAT 669 (1665)
++.+. ...|||||-.||............-.+=-+||+||||+-..+. . ..++. ..-++...+|+|.|
T Consensus 343 k~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G~--~----~~~~~----~~~~~a~~~gFTGT 412 (962)
T COG0610 343 KELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYGE--L----AKLLK----KALKKAIFIGFTGT 412 (962)
T ss_pred HHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccccH--H----HHHHH----HHhccceEEEeeCC
Confidence 12222 3489999999985554433111112223478999999754321 1 12221 12334788999999
Q ss_pred C
Q 000324 670 L 670 (1665)
Q Consensus 670 l 670 (1665)
.
T Consensus 413 P 413 (962)
T COG0610 413 P 413 (962)
T ss_pred c
Confidence 4
No 297
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=5.1e-05 Score=90.48 Aligned_cols=347 Identities=18% Similarity=0.228 Sum_probs=198.0
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCC---Cch--HHHHHHHHHHHHHhcCCC----------C--C--------CCCC
Q 000324 494 TQLNRVQSRVYKSALSSADNILLCAPTG---AGK--TNVAVLTILQQLALNRND----------D--G--------SFNH 548 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTG---sGK--T~~a~l~il~~l~~~~~~----------~--g--------~~~~ 548 (1665)
..|++.|.+.+..+.+=.+ ++ .||+ .|+ +-+|.|-+++++.+.+.. . | -...
T Consensus 215 ~pltalQ~~L~~~m~~YrD-l~--y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~ 291 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRD-LL--YPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGF 291 (698)
T ss_pred CcchHHHHHHHHHHHhhhh-hc--cccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCC
Confidence 4689999999988776655 43 3444 455 567888888887654310 0 1 0123
Q ss_pred CCcEEEEEcccHHHHHHHHHHHHHhhccCCc---E-------EEEEECCCc-----------------------------
Q 000324 549 SNYKIVYVAPMKALVAEVVGNLSNRLQMYDV---K-------VRELSGDQT----------------------------- 589 (1665)
Q Consensus 549 ~~~kil~iaP~raLa~q~~~~~~~~~~~~gi---~-------V~~ltGd~~----------------------------- 589 (1665)
..+++|+|+|+|+-|-.+++.+..++....- . -+++.|+..
T Consensus 292 tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ 371 (698)
T KOG2340|consen 292 TRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLA 371 (698)
T ss_pred CCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHH
Confidence 5689999999999999999999887542210 0 122333211
Q ss_pred ccHh------hhccccEEEeChhhHHHHHhh----cCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhh---
Q 000324 590 LTRQ------QIEETQIIVTTPEKWDIITRK----SGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIET--- 656 (1665)
Q Consensus 590 ~~~~------~~~~~~IiV~TPekld~l~r~----~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~--- 656 (1665)
++++ ....++|+||+|=-+.++... ..+..+++.+.++|||-+|.+.-..-..+..++..+..+=..
T Consensus 372 ftkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEhl~~ifdHLn~~P~k~h~ 451 (698)
T KOG2340|consen 372 FTKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEHLLHIFDHLNLQPSKQHD 451 (698)
T ss_pred HHHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHhhcCcccccC
Confidence 0111 123689999999888777663 345678999999999999988754444455555544211000
Q ss_pred --------------ccCCeeEEEEcccCCChHHHHHHHhccc--cCceEEecC-----CC--ccccceEEEEeeecCchh
Q 000324 657 --------------TKEHIRLVGLSATLPNYEDVALFLRVNL--EKGLFYFDN-----SY--RPVPLSQQYIGIQVKKPL 713 (1665)
Q Consensus 657 --------------~~~~~riV~lSATl~n~~dv~~~l~~~~--~~~~~~f~~-----~~--rpv~l~~~~~~~~~~~~~ 713 (1665)
..-..|++++|+-.. .++..++...- ..|...+.+ +. --+|+.|.+..+......
T Consensus 452 ~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~--~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~ 529 (698)
T KOG2340|consen 452 VDFSRVRMWYLDGQSRYFRQTLLFSRYSH--PLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSII 529 (698)
T ss_pred CChhheehheeccHHHHHHHHHHHHhhcc--HHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcc
Confidence 001234555555421 23333332110 112111111 11 124555555444433322
Q ss_pred ----HHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchh
Q 000324 714 ----QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (1665)
Q Consensus 714 ----~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l 789 (1665)
.++......+...+... ...-+||+++|--+-.++-..+++....-. .+
T Consensus 530 ~~~D~RFkyFv~~ImPq~~k~-t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~--------------~i------------ 582 (698)
T KOG2340|consen 530 ETPDARFKYFVDKIMPQLIKR-TESGILIYIPSYFDFVRVRNYMKKEEISFV--------------MI------------ 582 (698)
T ss_pred cCchHHHHHHHHhhchhhccc-ccCceEEEecchhhHHHHHHHhhhhhcchH--------------HH------------
Confidence 23333222211111111 134589999998887777776665432211 11
Q ss_pred hhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccc--cccccCCCceEEEEecccccCCCCCCcccCCHHHHHhh
Q 000324 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTAT--LAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQM 867 (1665)
Q Consensus 790 ~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~t--la~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr 867 (1665)
|.--+++.-...-+.|-.|..+||+-|-- .-+-.++.++.-||. |.||+. +.=..+++.|
T Consensus 583 -----------~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVf----YqpP~~---P~FYsEiinm 644 (698)
T KOG2340|consen 583 -----------NEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVF----YQPPNN---PHFYSEIINM 644 (698)
T ss_pred -----------hhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEE----ecCCCC---cHHHHHHHhh
Confidence 22223334445567899999999999953 345678889988898 777752 2235688999
Q ss_pred hcccCCCC--CCCceEEEEEeCCCc
Q 000324 868 LGRAGRPQ--YDSYGEGIIITGHSE 890 (1665)
Q Consensus 868 ~GRAGR~g--~d~~G~~iil~~~~~ 890 (1665)
.||+.--| ....-.|.++++.-+
T Consensus 645 ~~k~~~~gn~d~d~~t~~ilytKyD 669 (698)
T KOG2340|consen 645 SDKTTSQGNTDLDIFTVRILYTKYD 669 (698)
T ss_pred hhhhhccCCccccceEEEEEeechh
Confidence 99875433 334456777777644
No 298
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.15 E-value=1.5e-05 Score=108.52 Aligned_cols=66 Identities=17% Similarity=0.192 Sum_probs=53.5
Q ss_pred CCCCHHHHHHHHHHH---cCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHH
Q 000324 1340 KHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll---~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~ 1409 (1665)
-.++|-|.+....+. ..+..+++.||||+|||++|++|++..... .+. ++||-++|+.|.+|.+.+
T Consensus 256 ~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~--~~~--~vvIsT~T~~LQ~Ql~~k 324 (928)
T PRK08074 256 YEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKK--KEE--PVVISTYTIQLQQQLLEK 324 (928)
T ss_pred CcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhc--cCC--eEEEEcCCHHHHHHHHHh
Confidence 378999999665544 456668999999999999999999865554 234 899999999999998763
No 299
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.15 E-value=7e-05 Score=92.07 Aligned_cols=179 Identities=18% Similarity=0.224 Sum_probs=113.4
Q ss_pred CCCHHHHHHHHHHHcC----CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 495 QLNRVQSRVYKSALSS----ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~----~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
.+-|.|..++..++-. ..--|+...-|-|||+..+-.|+..-......++...... +++||||. +|+.|+..++
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~-~TLII~Pa-Sli~qW~~Ev 402 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESAS-KTLIICPA-SLIHQWEAEV 402 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccC-CeEEeCcH-HHHHHHHHHH
Confidence 6778999999876532 2246788899999999666566654333222222222233 69999996 6788999999
Q ss_pred HHhhccCCcEEEEEECCC--cccHhhhccccEEEeChhhHHH----HHhhcCCCccccce--eEEEEecccccccCCchH
Q 000324 571 SNRLQMYDVKVRELSGDQ--TLTRQQIEETQIIVTTPEKWDI----ITRKSGDRTYTQLV--KLLIIDEIHLLHDNRGPV 642 (1665)
Q Consensus 571 ~~~~~~~gi~V~~ltGd~--~~~~~~~~~~~IiV~TPekld~----l~r~~~~~~~l~~v--~liIiDEaH~l~d~rg~~ 642 (1665)
.+++...-++|..++|.. ......+..++|+|||+.-... =+........+..| .-||+||||.+-+... .
T Consensus 403 ~~rl~~n~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~t-q 481 (901)
T KOG4439|consen 403 ARRLEQNALSVYLYHGPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNSNT-Q 481 (901)
T ss_pred HHHHhhcceEEEEecCCccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcccch-h
Confidence 999998889999999987 3445667899999999873211 11122333444444 4699999999875432 2
Q ss_pred HHHHHHHHHHHHhhccCCeeEEEEcccC-CC-hH---HHHHHHhccc
Q 000324 643 LESIVARTVRQIETTKEHIRLVGLSATL-PN-YE---DVALFLRVNL 684 (1665)
Q Consensus 643 le~iv~r~~~~~~~~~~~~riV~lSATl-~n-~~---dv~~~l~~~~ 684 (1665)
-...|.++ ....| -++|+|. .| .- .+-+||++.|
T Consensus 482 ~S~AVC~L-------~a~~R-WclTGTPiqNn~~DvysLlrFLr~~p 520 (901)
T KOG4439|consen 482 CSKAVCKL-------SAKSR-WCLTGTPIQNNLWDVYSLLRFLRCPP 520 (901)
T ss_pred HHHHHHHH-------hhcce-eecccCccccchhHHHHHHHHhcCCC
Confidence 22233333 23344 4566663 33 22 3445565543
No 300
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=98.13 E-value=1.6e-05 Score=95.36 Aligned_cols=218 Identities=20% Similarity=0.238 Sum_probs=135.0
Q ss_pred EEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchh-ccCC
Q 000324 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK-LLEK 1438 (1665)
Q Consensus 1360 vlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~-~l~~ 1438 (1665)
++-++||.||||.-| |+++.. .+ +++|--|.|-||.++++++.+ .|+.+..+||+...... --..
T Consensus 194 i~H~GPTNSGKTy~A----Lqrl~~---ak--sGvycGPLrLLA~EV~~r~na-----~gipCdL~TGeE~~~~~~~~~~ 259 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRA----LQRLKS---AK--SGVYCGPLRLLAHEVYDRLNA-----LGIPCDLLTGEERRFVLDNGNP 259 (700)
T ss_pred EEEeCCCCCchhHHH----HHHHhh---hc--cceecchHHHHHHHHHHHhhh-----cCCCccccccceeeecCCCCCc
Confidence 667899999999876 566665 23 789999999999999998872 37888999997443211 1123
Q ss_pred CcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCC-CCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCChHHH
Q 000324 1439 GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDL 1517 (1665)
Q Consensus 1439 ~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~-~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~~dl 1517 (1665)
++.+-||.|+.. .-..++..||||+++|.+ .+|..|-..+--+. ...+.+.|=-|-++=.+.+
T Consensus 260 a~hvScTVEM~s----------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~------AdEiHLCGepsvldlV~~i 323 (700)
T KOG0953|consen 260 AQHVSCTVEMVS----------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLA------ADEIHLCGEPSVLDLVRKI 323 (700)
T ss_pred ccceEEEEEEee----------cCCceEEEEehhHHhhcCcccchHHHHHHHhhh------hhhhhccCCchHHHHHHHH
Confidence 578888887643 123578999999999987 55777766543221 2233333322222222233
Q ss_pred HHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHh
Q 000324 1518 GEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTY 1597 (1665)
Q Consensus 1518 ~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~ 1597 (1665)
++-.|.. +....-.|-.|+.+. ......+ ..+.++. -|.|-|++..-.+...+
T Consensus 324 ~k~TGd~----vev~~YeRl~pL~v~-----------------~~~~~sl-~nlk~GD--CvV~FSkk~I~~~k~kI--- 376 (700)
T KOG0953|consen 324 LKMTGDD----VEVREYERLSPLVVE-----------------ETALGSL-SNLKPGD--CVVAFSKKDIFTVKKKI--- 376 (700)
T ss_pred HhhcCCe----eEEEeecccCcceeh-----------------hhhhhhh-ccCCCCC--eEEEeehhhHHHHHHHH---
Confidence 3333321 111111222232221 1111111 1213332 35566787776666555
Q ss_pred cccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhc--CCceEEEC
Q 000324 1598 SSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA--GKIKICYR 1665 (1665)
Q Consensus 1598 ~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~--G~i~VLVC 1665 (1665)
.....+.+++++|+++++-|..--.+|.+ +..+|||+
T Consensus 377 -------------------------------E~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVA 415 (700)
T KOG0953|consen 377 -------------------------------EKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVA 415 (700)
T ss_pred -------------------------------HHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEe
Confidence 13345669999999999999999999998 99999984
No 301
>COG4889 Predicted helicase [General function prediction only]
Probab=98.03 E-value=2.4e-05 Score=97.35 Aligned_cols=128 Identities=20% Similarity=0.294 Sum_probs=91.8
Q ss_pred CCCCCHHHHHHHHHHHc---CCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhc
Q 000324 1339 FKHFNPIQTQVFTVLYN---TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~---~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~ 1415 (1665)
-..|+|+|++|+...+. .++.-=+.+..|+|||..++- |...+.. . ++|+++|+.+|..|.++.|...
T Consensus 159 ~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala~----~--~iL~LvPSIsLLsQTlrew~~~-- 229 (1518)
T COG4889 159 PKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALAA----A--RILFLVPSISLLSQTLREWTAQ-- 229 (1518)
T ss_pred CCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHhh----h--heEeecchHHHHHHHHHHHhhc--
Confidence 46899999999999875 345566778899999999844 3333333 2 8999999999999999999843
Q ss_pred CCCCcEEEEEeCCCccc------------------hh----------ccCCCcEEEEChhhHHHHHHhhhccccCCCccE
Q 000324 1416 QGLGMRVVELTGETAMD------------------LK----------LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSL 1467 (1665)
Q Consensus 1416 ~~~~i~v~~l~G~~~~~------------------~~----------~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~l 1467 (1665)
+.+.++...++++.... .+ .-.+--||++|-+.+..+-.- ++.-+..+++
T Consensus 230 ~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA--Qe~G~~~fDl 307 (1518)
T COG4889 230 KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA--QEAGLDEFDL 307 (1518)
T ss_pred cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH--HHcCCCCccE
Confidence 23456666666653221 00 011225888998887666543 5667889999
Q ss_pred EEeecccccC
Q 000324 1468 FIIDELHLIG 1477 (1665)
Q Consensus 1468 lViDEaH~l~ 1477 (1665)
||.||||+-.
T Consensus 308 iicDEAHRTt 317 (1518)
T COG4889 308 IICDEAHRTT 317 (1518)
T ss_pred EEecchhccc
Confidence 9999999753
No 302
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.03 E-value=4.1e-05 Score=88.14 Aligned_cols=128 Identities=16% Similarity=0.127 Sum_probs=93.6
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (1665)
.|+++|--+.-.+..+ -|+...||=|||+++.++..-.... +..+-+|+...-||..=++.+...+
T Consensus 77 ~p~~vQll~~l~L~~G---~laEm~TGEGKTli~~l~a~~~AL~-----------G~~V~vvT~NdyLA~RD~~~~~~~y 142 (266)
T PF07517_consen 77 RPYDVQLLGALALHKG---RLAEMKTGEGKTLIAALPAALNALQ-----------GKGVHVVTSNDYLAKRDAEEMRPFY 142 (266)
T ss_dssp ---HHHHHHHHHHHTT---SEEEESTTSHHHHHHHHHHHHHHTT-----------SS-EEEEESSHHHHHHHHHHHHHHH
T ss_pred cccHHHHhhhhhcccc---eeEEecCCCCcHHHHHHHHHHHHHh-----------cCCcEEEeccHHHhhccHHHHHHHH
Confidence 6778888777655333 4899999999999988777655443 3468889999999999999999999
Q ss_pred ccCCcEEEEEECCCcccH-hhhccccEEEeChhhH--HHHHhhcCC---CccccceeEEEEecccccc
Q 000324 575 QMYDVKVRELSGDQTLTR-QQIEETQIIVTTPEKW--DIITRKSGD---RTYTQLVKLLIIDEIHLLH 636 (1665)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~-~~~~~~~IiV~TPekl--d~l~r~~~~---~~~l~~v~liIiDEaH~l~ 636 (1665)
..+|++|+..+++.+... +..-.++|+++|...+ |.|..+... ........++||||||.+.
T Consensus 143 ~~LGlsv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 143 EFLGLSVGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHTT--EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHhhhccccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 999999999999887543 3455789999999985 666554422 1224678999999999653
No 303
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=97.94 E-value=0.00049 Score=88.55 Aligned_cols=156 Identities=19% Similarity=0.244 Sum_probs=99.0
Q ss_pred CCCCCHHHHHHHHHHHc---C-----C-CcEEEECCCCChHHHHHHHHHHHHHHhhcCC-----CCeEEEEEcccHHHHH
Q 000324 1339 FKHFNPIQTQVFTVLYN---T-----D-DNVLVAAPTGSGKTICSEFAILRNHQKASET-----GVMRAVYIAPLEALAK 1404 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~---~-----~-dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~-----~~~r~l~I~PtreLa~ 1404 (1665)
...++|+|.+.|.-++. | + .-.|+.=..|+|||+....-|...+.+. +. . ++|||+|. .|+.
T Consensus 236 ~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~-P~~~~~~~--k~lVV~P~-sLv~ 311 (776)
T KOG0390|consen 236 KKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQF-PQAKPLIN--KPLVVAPS-SLVN 311 (776)
T ss_pred hhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhC-cCcccccc--ccEEEccH-HHHH
Confidence 35789999999998874 1 1 1256666789999999877777777774 44 3 79999996 6777
Q ss_pred HHHHHHHHHhcCCCCcEEEEEeCCCccc---h-hcc------CCCcEEEEChhhHHHHHHhhhccccCCCccEEEeeccc
Q 000324 1405 ERYRDWEIKFGQGLGMRVVELTGETAMD---L-KLL------EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH 1474 (1665)
Q Consensus 1405 Q~~~~~~~~~~~~~~i~v~~l~G~~~~~---~-~~l------~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH 1474 (1665)
-+.++|.+-.+. ..+....++|..... . .++ -...|.+.+-+.+....+. .....++++|+||.|
T Consensus 312 nWkkEF~KWl~~-~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~----il~~~~glLVcDEGH 386 (776)
T KOG0390|consen 312 NWKKEFGKWLGN-HRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK----ILLIRPGLLVCDEGH 386 (776)
T ss_pred HHHHHHHHhccc-cccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH----HhcCCCCeEEECCCC
Confidence 777777643332 245566666665531 0 011 1124666676666544433 346789999999999
Q ss_pred ccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCC
Q 000324 1475 LIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (1665)
Q Consensus 1475 ~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~ 1512 (1665)
++-+... .+......+..+.| |+||.|+-
T Consensus 387 rlkN~~s--------~~~kaL~~l~t~rR-VLLSGTp~ 415 (776)
T KOG0390|consen 387 RLKNSDS--------LTLKALSSLKTPRR-VLLTGTPI 415 (776)
T ss_pred Cccchhh--------HHHHHHHhcCCCce-EEeeCCcc
Confidence 9965432 22222333444444 67788863
No 304
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.93 E-value=0.0003 Score=90.77 Aligned_cols=112 Identities=15% Similarity=0.133 Sum_probs=83.7
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEECCCcccH
Q 000324 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR 592 (1665)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~ 592 (1665)
.-+.-.-||-|||+++.+|+.-.... +..+.+|...--||.--+......+..+|++|+....+.+...
T Consensus 95 g~iaEM~TGEGKTL~atlp~ylnaL~-----------gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~~~~~m~~~e 163 (822)
T COG0653 95 GDIAEMRTGEGKTLVATLPAYLNALA-----------GKGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGVILAGMSPEE 163 (822)
T ss_pred CceeeeecCCchHHHHHHHHHHHhcC-----------CCCcEEeeehHHhhhhCHHHHHHHHHHcCCceeeccCCCChHH
Confidence 35788999999999999987644332 2247778888889988888888889999999999988886653
Q ss_pred -hhhccccEEEeChhhH--HHHHhhc---CCCccccceeEEEEeccccc
Q 000324 593 -QQIEETQIIVTTPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLL 635 (1665)
Q Consensus 593 -~~~~~~~IiV~TPekl--d~l~r~~---~~~~~l~~v~liIiDEaH~l 635 (1665)
+..-.++|.++|-..+ |.+.-+. .+..+.....+-|+||++.+
T Consensus 164 k~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSI 212 (822)
T COG0653 164 KRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSI 212 (822)
T ss_pred HHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhe
Confidence 3456899999998874 5443332 12234455788899999865
No 305
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.89 E-value=0.00039 Score=82.34 Aligned_cols=220 Identities=16% Similarity=0.238 Sum_probs=126.1
Q ss_pred CCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcE
Q 000324 1342 FNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMR 1421 (1665)
Q Consensus 1342 ~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~ 1421 (1665)
|-=-|+.-|-.++..+.-+++++.||||||.-.--..+...... .+ .+..--|.|--|.++..+....+. +.
T Consensus 47 Pvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~--~~--~v~CTQprrvaamsva~RVadEMD----v~ 118 (699)
T KOG0925|consen 47 PVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH--LT--GVACTQPRRVAAMSVAQRVADEMD----VT 118 (699)
T ss_pred chHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh--cc--ceeecCchHHHHHHHHHHHHHHhc----cc
Confidence 33346677777887788789999999999975322222222221 12 577788999999888877664443 33
Q ss_pred EEEEeCCCccchhccCCCcEEEEChhhHHH------HHHhhhccccCCCccEEEeecccc--cCCCCchhHHHHHHHHHH
Q 000324 1422 VVELTGETAMDLKLLEKGQIIISTPEKWDA------LSRRWKQRKYVQQVSLFIIDELHL--IGGQGGPVLEVIVSRMRY 1493 (1665)
Q Consensus 1422 v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~------l~r~~~~~~~l~~v~llViDEaH~--l~~~~g~~~e~~~srl~~ 1493 (1665)
.+.-.|-. .. .+. .+||..+.. ++|.-.....+...+.+|+||||. +..+ .++--++.
T Consensus 119 lG~EVGys-Ir---fEd----C~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATD------iLmGllk~ 184 (699)
T KOG0925|consen 119 LGEEVGYS-IR---FED----CTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATD------ILMGLLKE 184 (699)
T ss_pred cchhcccc-cc---ccc----cCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHH------HHHHHHHH
Confidence 32222211 11 111 134444322 233333455688899999999993 3222 24444555
Q ss_pred HHhhcCCCCeEEEEcccCCChHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcChhHHHHHHHHhcC
Q 000324 1494 IASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKN 1573 (1665)
Q Consensus 1494 i~~~~~~~~riI~lSATl~n~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l~~ 1573 (1665)
+.... ++.++|.+|||+ .+..+..+++..+ +..++. .. |+++....-...+ ++.+..+..++.... ..
T Consensus 185 v~~~r-pdLk~vvmSatl-~a~Kfq~yf~n~P--ll~vpg-~~--PvEi~Yt~e~erD---ylEaairtV~qih~~--ee 252 (699)
T KOG0925|consen 185 VVRNR-PDLKLVVMSATL-DAEKFQRYFGNAP--LLAVPG-TH--PVEIFYTPEPERD---YLEAAIRTVLQIHMC--EE 252 (699)
T ss_pred HHhhC-CCceEEEeeccc-chHHHHHHhCCCC--eeecCC-CC--ceEEEecCCCChh---HHHHHHHHHHHHHhc--cC
Confidence 55554 599999999998 5556667776543 344333 33 4454332222222 222222333222222 33
Q ss_pred CCCEEEEeCchHHHHHHHHHHH
Q 000324 1574 EKPALVFVPSRKYVRLTAVDLM 1595 (1665)
Q Consensus 1574 ~~~~IVFv~sr~~a~~la~~L~ 1595 (1665)
.+-++||.......+..+..+.
T Consensus 253 ~GDilvFLtgeeeIe~aC~~i~ 274 (699)
T KOG0925|consen 253 PGDILVFLTGEEEIEDACRKIS 274 (699)
T ss_pred CCCEEEEecCHHHHHHHHHHHH
Confidence 4569999999998888887775
No 306
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=97.88 E-value=0.00067 Score=87.06 Aligned_cols=148 Identities=16% Similarity=0.179 Sum_probs=85.2
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchhcc
Q 000324 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLL 1436 (1665)
Q Consensus 1357 ~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~l 1436 (1665)
+.-.+|-||.|||||.+..-.+-..+. .+.. ++++|+..++|+.+...+++.. + ..|.....-.++...+ .
T Consensus 49 ~~V~vVRSpMGTGKTtaLi~wLk~~l~--~~~~--~VLvVShRrSL~~sL~~rf~~~-~-l~gFv~Y~d~~~~~i~---~ 119 (824)
T PF02399_consen 49 RGVLVVRSPMGTGKTTALIRWLKDALK--NPDK--SVLVVSHRRSLTKSLAERFKKA-G-LSGFVNYLDSDDYIID---G 119 (824)
T ss_pred CCeEEEECCCCCCcHHHHHHHHHHhcc--CCCC--eEEEEEhHHHHHHHHHHHHhhc-C-CCcceeeecccccccc---c
Confidence 333688999999999876443322222 2344 8999999999999999988732 1 1122211111111111 0
Q ss_pred CCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCC-Cchh---HHHHHHHHHHHHhhcCCCCeEEEEcccCC
Q 000324 1437 EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPV---LEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (1665)
Q Consensus 1437 ~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~-~g~~---~e~~~srl~~i~~~~~~~~riI~lSATl~ 1512 (1665)
+..+-++++.+.+..+ ....+.+.++|||||+-.+... ..+. .+.+...+..+ +....++|++-|++.
T Consensus 120 ~~~~rLivqIdSL~R~-----~~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~l---I~~ak~VI~~DA~ln 191 (824)
T PF02399_consen 120 RPYDRLIVQIDSLHRL-----DGSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKEL---IRNAKTVIVMDADLN 191 (824)
T ss_pred cccCeEEEEehhhhhc-----ccccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHH---HHhCCeEEEecCCCC
Confidence 1235555655544322 2234677999999999855432 1222 23344444444 345678999999997
Q ss_pred Ch-HHHHHHh
Q 000324 1513 NA-KDLGEWI 1521 (1665)
Q Consensus 1513 n~-~dl~~wl 1521 (1665)
+. -++.+-+
T Consensus 192 ~~tvdFl~~~ 201 (824)
T PF02399_consen 192 DQTVDFLASC 201 (824)
T ss_pred HHHHHHHHHh
Confidence 63 2444444
No 307
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.88 E-value=7.1e-05 Score=86.18 Aligned_cols=129 Identities=18% Similarity=0.159 Sum_probs=88.2
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000324 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~ 1419 (1665)
..|++.|--+.-.+.. +-|+.+.||-|||+++.+|+.-+... +. .+=+|+.+.-||..=++.+...| ..+|
T Consensus 76 ~~p~~vQll~~l~L~~---G~laEm~TGEGKTli~~l~a~~~AL~---G~--~V~vvT~NdyLA~RD~~~~~~~y-~~LG 146 (266)
T PF07517_consen 76 LRPYDVQLLGALALHK---GRLAEMKTGEGKTLIAALPAALNALQ---GK--GVHVVTSNDYLAKRDAEEMRPFY-EFLG 146 (266)
T ss_dssp ----HHHHHHHHHHHT---TSEEEESTTSHHHHHHHHHHHHHHTT---SS---EEEEESSHHHHHHHHHHHHHHH-HHTT
T ss_pred CcccHHHHhhhhhccc---ceeEEecCCCCcHHHHHHHHHHHHHh---cC--CcEEEeccHHHhhccHHHHHHHH-HHhh
Confidence 3566666666544533 24999999999999998888765554 22 67889999999999998887444 4689
Q ss_pred cEEEEEeCCCccch-hccCCCcEEEEChhhHHH-HHH-hhhc---cccCCCccEEEeecccccC
Q 000324 1420 MRVVELTGETAMDL-KLLEKGQIIISTPEKWDA-LSR-RWKQ---RKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1420 i~v~~l~G~~~~~~-~~l~~~~IIV~TPe~l~~-l~r-~~~~---~~~l~~v~llViDEaH~l~ 1477 (1665)
++|+..+++.+.+. +..-.++|+.+|...+.. .+| ++.. ........++||||+|.++
T Consensus 147 lsv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 147 LSVGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp --EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred hccccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 99999999877552 344467999999998743 333 2221 1124689999999999664
No 308
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.79 E-value=9.3e-05 Score=84.79 Aligned_cols=75 Identities=32% Similarity=0.380 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (1665)
+||+-|.+++..++....-.+|.||.|+|||.+..-.+...+.... ......+.++++++|+.+.+.++..++.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~---~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFK---SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH----------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchh---hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 4799999999988876544899999999999655443333321000 00012356899999999999999999988
No 309
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.77 E-value=0.00018 Score=94.72 Aligned_cols=53 Identities=28% Similarity=0.233 Sum_probs=44.0
Q ss_pred CCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEE
Q 000324 820 HVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 882 (1665)
Q Consensus 820 ~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~ 882 (1665)
.++.|++-++|..|-|-|.+-+|.. ..... |...-.|.+||.-|...|..|+-
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~----l~~~~------s~~~~~q~~gr~lr~~vnq~G~R 553 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAK----LRSSG------SETSKLQEVGRGLRLPVDENGHR 553 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEE----eccCC------chHHHHHHhccceeccccccCcc
Confidence 6789999999999999999988876 43332 67788999999999888777754
No 310
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.76 E-value=0.0001 Score=90.06 Aligned_cols=81 Identities=22% Similarity=0.302 Sum_probs=66.6
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
+|+..||.-|+.|+..++... --||.||.|+|||.+..-.+.+.+..+ .+.|++++|.-..+.|+++.+
T Consensus 406 ~~lpkLN~SQ~~AV~~VL~rp-lsLIQGPPGTGKTvtsa~IVyhl~~~~----------~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 406 PNLPKLNASQSNAVKHVLQRP-LSLIQGPPGTGKTVTSATIVYHLARQH----------AGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred CCchhhchHHHHHHHHHHcCC-ceeeecCCCCCceehhHHHHHHHHHhc----------CCceEEEcccchhHHHHHHHH
Confidence 578899999999999998764 489999999999998876666666554 457999999999999998887
Q ss_pred HHhhccCCcEEEEEEC
Q 000324 571 SNRLQMYDVKVRELSG 586 (1665)
Q Consensus 571 ~~~~~~~gi~V~~ltG 586 (1665)
.+ .|++|..+..
T Consensus 475 h~----tgLKVvRl~a 486 (935)
T KOG1802|consen 475 HK----TGLKVVRLCA 486 (935)
T ss_pred Hh----cCceEeeeeh
Confidence 65 3778777654
No 311
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.76 E-value=0.00017 Score=95.00 Aligned_cols=143 Identities=15% Similarity=0.192 Sum_probs=86.2
Q ss_pred CcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHH-----HHhcCC-CC--cEEEEEeCCC
Q 000324 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE-----IKFGQG-LG--MRVVELTGET 1429 (1665)
Q Consensus 1358 dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~-----~~~~~~-~~--i~v~~l~G~~ 1429 (1665)
-|+.+.|+||+|||.+|+-.|+...... ... +.||+||+.++...+.+-+. ..|... .+ +....+.++.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~-~~~--~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k 136 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKY-GLF--KFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGD 136 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHc-CCc--EEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCc
Confidence 3799999999999999999988776662 233 89999999999888876544 334322 22 3444454432
Q ss_pred ---------ccchh-ccC-------CCcEEEEChhhHHHH-H-Hhh------hcc-c---cCC-CccEEEeecccccCCC
Q 000324 1430 ---------AMDLK-LLE-------KGQIIISTPEKWDAL-S-RRW------KQR-K---YVQ-QVSLFIIDELHLIGGQ 1479 (1665)
Q Consensus 1430 ---------~~~~~-~l~-------~~~IIV~TPe~l~~l-~-r~~------~~~-~---~l~-~v~llViDEaH~l~~~ 1479 (1665)
....+ ... .-+|+|.|.+.+..- . +.. .+. . .++ .-=.||+||.|++...
T Consensus 137 ~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~ 216 (986)
T PRK15483 137 KKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD 216 (986)
T ss_pred ccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc
Confidence 11111 111 248999999988641 1 111 001 1 111 2247899999999542
Q ss_pred CchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCC
Q 000324 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1480 ~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n 1513 (1665)
+..++.+ . .+. +.-++.+|||.++
T Consensus 217 -~k~~~~i----~----~ln-pl~~lrysAT~~~ 240 (986)
T PRK15483 217 -NKFYQAI----E----ALK-PQMIIRFGATFPD 240 (986)
T ss_pred -hHHHHHH----H----hcC-cccEEEEeeecCC
Confidence 2333322 1 122 3335779999976
No 312
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.74 E-value=0.0001 Score=84.43 Aligned_cols=70 Identities=19% Similarity=0.255 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHH-----hhcCCCCeEEEEEcccHHHHHHHHHHHHH
Q 000324 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQ-----KASETGVMRAVYIAPLEALAKERYRDWEI 1412 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~-----~~~~~~~~r~l~I~PtreLa~Q~~~~~~~ 1412 (1665)
++|+-|.+|+..++....-.+|.+|+|+|||.+..-.+...+. ....+. ++++++|+..-++++...+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~--~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGK--KILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS---EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccc--cceeecCCchhHHHHHHHHHh
Confidence 4789999999999875443799999999999665444443321 122344 899999999999999999884
No 313
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.70 E-value=3.7e-05 Score=85.01 Aligned_cols=147 Identities=20% Similarity=0.245 Sum_probs=72.1
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHH------
Q 000324 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV------ 566 (1665)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~------ 566 (1665)
++..|.-|..++..++ ..+.+++.||.|||||++++.+.++.+.... --+++|+-|..+...++
T Consensus 2 I~p~~~~Q~~~~~al~-~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~---------~~kiii~Rp~v~~~~~lGflpG~ 71 (205)
T PF02562_consen 2 IKPKNEEQKFALDALL-NNDLVIVNGPAGTGKTFLALAAALELVKEGE---------YDKIIITRPPVEAGEDLGFLPGD 71 (205)
T ss_dssp ----SHHHHHHHHHHH-H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS----------SEEEEEE-S--TT----SS---
T ss_pred ccCCCHHHHHHHHHHH-hCCeEEEECCCCCcHHHHHHHHHHHHHHhCC---------CcEEEEEecCCCCccccccCCCC
Confidence 3457899999999988 5677999999999999999999999887632 23899998887542221
Q ss_pred -HHHHHHhhccCCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHH
Q 000324 567 -VGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES 645 (1665)
Q Consensus 567 -~~~~~~~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~ 645 (1665)
.+.+.-++.++--....+.|... -........|-+..+.- .|.. . ++ -.+||+|||+.+. ...+..
T Consensus 72 ~~eK~~p~~~p~~d~l~~~~~~~~-~~~~~~~~~Ie~~~~~~----iRGr---t-~~-~~~iIvDEaQN~t---~~~~k~ 138 (205)
T PF02562_consen 72 LEEKMEPYLRPIYDALEELFGKEK-LEELIQNGKIEIEPLAF----IRGR---T-FD-NAFIIVDEAQNLT---PEELKM 138 (205)
T ss_dssp ------TTTHHHHHHHTTTS-TTC-HHHHHHTTSEEEEEGGG----GTT------B--SEEEEE-SGGG-----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhChHh-HHHHhhcCeEEEEehhh----hcCc---c-cc-ceEEEEecccCCC---HHHHHH
Confidence 11111111000000000001111 12223445566666551 2211 1 22 2799999999764 334555
Q ss_pred HHHHHHHHHhhccCCeeEEEEccc
Q 000324 646 IVARTVRQIETTKEHIRLVGLSAT 669 (1665)
Q Consensus 646 iv~r~~~~~~~~~~~~riV~lSAT 669 (1665)
+++|+ ..+.++|++.-.
T Consensus 139 ilTR~-------g~~skii~~GD~ 155 (205)
T PF02562_consen 139 ILTRI-------GEGSKIIITGDP 155 (205)
T ss_dssp HHTTB--------TT-EEEEEE--
T ss_pred HHccc-------CCCcEEEEecCc
Confidence 55543 667787776433
No 314
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=97.70 E-value=0.00012 Score=94.47 Aligned_cols=129 Identities=16% Similarity=0.132 Sum_probs=89.6
Q ss_pred CCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcE
Q 000324 1342 FNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMR 1421 (1665)
Q Consensus 1342 ~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~ 1421 (1665)
++|+=.|.+-.+.-... -|+.+.||-|||+++.+|+.-.... +. .+-+|+++.-||..-.+.+. .+-..+|++
T Consensus 84 ~r~ydVQliGgl~Lh~G-~IAEM~TGEGKTL~atlpaylnAL~---Gk--gVhVVTvNdYLA~RDae~m~-~vy~~LGLt 156 (939)
T PRK12902 84 MRHFDVQLIGGMVLHEG-QIAEMKTGEGKTLVATLPSYLNALT---GK--GVHVVTVNDYLARRDAEWMG-QVHRFLGLS 156 (939)
T ss_pred CCcchhHHHhhhhhcCC-ceeeecCCCChhHHHHHHHHHHhhc---CC--CeEEEeCCHHHHHhHHHHHH-HHHHHhCCe
Confidence 44444444544332222 5899999999999999998754444 22 58899999999998777555 555668999
Q ss_pred EEEEeCCCccc-hhccCCCcEEEEChhhH--HHHHHhh---hccccCCCccEEEeecccccC
Q 000324 1422 VVELTGETAMD-LKLLEKGQIIISTPEKW--DALSRRW---KQRKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1422 v~~l~G~~~~~-~~~l~~~~IIV~TPe~l--~~l~r~~---~~~~~l~~v~llViDEaH~l~ 1477 (1665)
|+...++.+.. .+..-.+||+.+|+..+ +.+-.+. ........+.+.||||+|.++
T Consensus 157 vg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 157 VGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred EEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 99998877665 34556789999999987 2111111 112234678899999999664
No 315
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=97.68 E-value=0.00038 Score=86.70 Aligned_cols=155 Identities=21% Similarity=0.274 Sum_probs=100.0
Q ss_pred CCCCHHHHHHHHHH---HcCCCcEEEECCCCChHHHHHHHHHHHHHHhhc-CCCCeEEEEEcccHHHHHHHHHHHHHHhc
Q 000324 1340 KHFNPIQTQVFTVL---YNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~l---l~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~-~~~~~r~l~I~PtreLa~Q~~~~~~~~~~ 1415 (1665)
..++++|.+-++.+ ++.+-|.|+.-.-|-|||+-. ++++.++.... -.| .-+||+|.--| ..+.++++ +|.
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~~~~G--PfLVi~P~StL-~NW~~Ef~-rf~ 240 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRKGIPG--PFLVIAPKSTL-DNWMNEFK-RFT 240 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhcCCCC--CeEEEeeHhhH-HHHHHHHH-HhC
Confidence 47888998877654 556667999999999999864 33333333321 233 57899998766 44666677 666
Q ss_pred CCCCcEEEEEeCCCccchh----ccC--CCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHH
Q 000324 1416 QGLGMRVVELTGETAMDLK----LLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVS 1489 (1665)
Q Consensus 1416 ~~~~i~v~~l~G~~~~~~~----~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~s 1489 (1665)
+ ++++..++|+...... .+. .-+|+|+|-|....--.-.+ --+-+++||||+|+|-... +
T Consensus 241 P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~lk----~~~W~ylvIDEaHRiKN~~--------s 306 (971)
T KOG0385|consen 241 P--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSFLK----KFNWRYLVIDEAHRIKNEK--------S 306 (971)
T ss_pred C--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHHHh----cCCceEEEechhhhhcchh--------h
Confidence 4 6899999998754422 222 34999999998753211111 1246799999999997544 3
Q ss_pred HHHHHHhhcCCCCeEEEEcccCCC
Q 000324 1490 RMRYIASQVENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1490 rl~~i~~~~~~~~riI~lSATl~n 1513 (1665)
++..+.+.+....++++..+++.|
T Consensus 307 ~L~~~lr~f~~~nrLLlTGTPLQN 330 (971)
T KOG0385|consen 307 KLSKILREFKTDNRLLLTGTPLQN 330 (971)
T ss_pred HHHHHHHHhcccceeEeeCCcccc
Confidence 333444455556665554444544
No 316
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.62 E-value=0.00031 Score=78.35 Aligned_cols=64 Identities=25% Similarity=0.385 Sum_probs=47.0
Q ss_pred CCCHHHHHHHHHHHcCCC-cEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000324 495 QLNRVQSRVYKSALSSAD-NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~-nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (1665)
+||+-|.+++..++.+++ -.+|+||.|+|||.+. -.+...+... +.++++++||...+.++.+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~~----------g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEAA----------GKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHHT----------T--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHhC----------CCeEEEECCcHHHHHHHHHh
Confidence 478999999999987765 4677899999999854 3455555442 45899999999998886655
No 317
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=97.60 E-value=0.0001 Score=95.40 Aligned_cols=128 Identities=19% Similarity=0.120 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEE
Q 000324 1343 NPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRV 1422 (1665)
Q Consensus 1343 ~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v 1422 (1665)
+|+=.|.+..+.-. +.-++.+.||.|||+++.+|+.-.... +. .+-||+++..||.+-++.+. .+-..+|++|
T Consensus 76 r~ydvQlig~l~L~-~G~IaEm~TGEGKTL~a~l~ayl~aL~---G~--~VhVvT~NdyLA~RD~e~m~-pvy~~LGLsv 148 (870)
T CHL00122 76 RHFDVQLIGGLVLN-DGKIAEMKTGEGKTLVATLPAYLNALT---GK--GVHIVTVNDYLAKRDQEWMG-QIYRFLGLTV 148 (870)
T ss_pred CCCchHhhhhHhhc-CCccccccCCCCchHHHHHHHHHHHhc---CC--ceEEEeCCHHHHHHHHHHHH-HHHHHcCCce
Confidence 33344444444332 237899999999999999998633333 22 68899999999999888666 5555689999
Q ss_pred EEEeCCCccch-hccCCCcEEEEChhhHH-HHHHh-hh---ccccCCCccEEEeecccccC
Q 000324 1423 VELTGETAMDL-KLLEKGQIIISTPEKWD-ALSRR-WK---QRKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1423 ~~l~G~~~~~~-~~l~~~~IIV~TPe~l~-~l~r~-~~---~~~~l~~v~llViDEaH~l~ 1477 (1665)
+...++.+... +..-.++|+.+|...+- +.+|. .. .......+.+.||||+|.++
T Consensus 149 g~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 149 GLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred eeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 99988877653 34456799999998652 22322 11 11234568899999999654
No 318
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=97.60 E-value=0.00068 Score=80.59 Aligned_cols=155 Identities=15% Similarity=0.158 Sum_probs=101.3
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000324 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~ 1418 (1665)
++.+-|+|.+-+...++.+..+++.-.-|-|||+-| ++|...... .. -.|||||. .+-..+.+.+...|....
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQA-laIA~yyra---Ew--plliVcPA-svrftWa~al~r~lps~~ 268 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQA-LAIARYYRA---EW--PLLIVCPA-SVRFTWAKALNRFLPSIH 268 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHH-HHHHHHHhh---cC--cEEEEecH-HHhHHHHHHHHHhccccc
Confidence 456778999999888887777999999999999988 455555444 22 58899996 344556666664444433
Q ss_pred CcEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhc
Q 000324 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV 1498 (1665)
Q Consensus 1419 ~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~ 1498 (1665)
. |..+.++...-......+.|.|.+-+.+..+-..... ...+++|+||+|++-+........++.- +
T Consensus 269 p--i~vv~~~~D~~~~~~t~~~v~ivSye~ls~l~~~l~~----~~~~vvI~DEsH~Lk~sktkr~Ka~~dl-------l 335 (689)
T KOG1000|consen 269 P--IFVVDKSSDPLPDVCTSNTVAIVSYEQLSLLHDILKK----EKYRVVIFDESHMLKDSKTKRTKAATDL-------L 335 (689)
T ss_pred c--eEEEecccCCccccccCCeEEEEEHHHHHHHHHHHhc----ccceEEEEechhhhhccchhhhhhhhhH-------H
Confidence 3 4344444333222334557889998887655443222 3478999999999976543333333322 2
Q ss_pred CCCCeEEEEcccCCC
Q 000324 1499 ENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1499 ~~~~riI~lSATl~n 1513 (1665)
..-.++|+||.|++=
T Consensus 336 k~akhvILLSGTPav 350 (689)
T KOG1000|consen 336 KVAKHVILLSGTPAV 350 (689)
T ss_pred HHhhheEEecCCccc
Confidence 335678999999864
No 319
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=97.60 E-value=0.0012 Score=86.72 Aligned_cols=112 Identities=16% Similarity=0.155 Sum_probs=74.6
Q ss_pred EEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccc-hhccCC
Q 000324 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD-LKLLEK 1438 (1665)
Q Consensus 1360 vlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~-~~~l~~ 1438 (1665)
-|.-+.||-|||+++.||+.-.... +. .+=+|+..--||..=. .|...+-..+|++|+++..+.+.+ .+..-.
T Consensus 154 ~IAEM~TGEGKTLvatlp~yLnAL~---G~--gVHvVTvNDYLA~RDa-ewm~p~y~flGLtVg~i~~~~~~~~Rr~aY~ 227 (1025)
T PRK12900 154 KISEMATGEGKTLVSTLPTFLNALT---GR--GVHVVTVNDYLAQRDK-EWMNPVFEFHGLSVGVILNTMRPEERREQYL 227 (1025)
T ss_pred CccccCCCCCcchHhHHHHHHHHHc---CC--CcEEEeechHhhhhhH-HHHHHHHHHhCCeeeeeCCCCCHHHHHHhCC
Confidence 4789999999999999999755554 22 2445555555665544 355455566899999997776655 445567
Q ss_pred CcEEEEChhhHH-HHHHh-h---hccccCCCccEEEeecccccC
Q 000324 1439 GQIIISTPEKWD-ALSRR-W---KQRKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1439 ~~IIV~TPe~l~-~l~r~-~---~~~~~l~~v~llViDEaH~l~ 1477 (1665)
+||+.+|...|- +.+|. . ..........+.||||+|.++
T Consensus 228 ~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvL 271 (1025)
T PRK12900 228 CDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVL 271 (1025)
T ss_pred CcceecCCCccccccchhccccchhhhhccCCceEEEechhhhh
Confidence 899999998761 12221 1 111223567899999999653
No 320
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.59 E-value=9.8e-05 Score=81.73 Aligned_cols=147 Identities=24% Similarity=0.284 Sum_probs=76.1
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHH---HHHHHHhcC
Q 000324 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY---RDWEIKFGQ 1416 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~---~~~~~~~~~ 1416 (1665)
.-.|+-|..++.++++ .+.+++.+|.|+|||+++....++.+.. ..-. +++|+-|..+..+.+- ....+++..
T Consensus 3 ~p~~~~Q~~~~~al~~-~~~v~~~G~AGTGKT~LA~a~Al~~v~~-g~~~--kiii~Rp~v~~~~~lGflpG~~~eK~~p 78 (205)
T PF02562_consen 3 KPKNEEQKFALDALLN-NDLVIVNGPAGTGKTFLALAAALELVKE-GEYD--KIIITRPPVEAGEDLGFLPGDLEEKMEP 78 (205)
T ss_dssp ---SHHHHHHHHHHHH--SEEEEE--TTSSTTHHHHHHHHHHHHT-TS-S--EEEEEE-S--TT----SS---------T
T ss_pred cCCCHHHHHHHHHHHh-CCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCc--EEEEEecCCCCccccccCCCCHHHHHHH
Confidence 3468899999999994 6679999999999999999999998887 3344 8999988875421110 000111110
Q ss_pred CCCc---EEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHH
Q 000324 1417 GLGM---RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRY 1493 (1665)
Q Consensus 1417 ~~~i---~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~ 1493 (1665)
...- ....+.+. ..-...+..+.|-+..+.-+ | ++ .+. -.+||+|||+.+. ...++.
T Consensus 79 ~~~p~~d~l~~~~~~-~~~~~~~~~~~Ie~~~~~~i----R---Gr-t~~-~~~iIvDEaQN~t----------~~~~k~ 138 (205)
T PF02562_consen 79 YLRPIYDALEELFGK-EKLEELIQNGKIEIEPLAFI----R---GR-TFD-NAFIIVDEAQNLT----------PEELKM 138 (205)
T ss_dssp TTHHHHHHHTTTS-T-TCHHHHHHTTSEEEEEGGGG----T---T---B--SEEEEE-SGGG------------HHHHHH
T ss_pred HHHHHHHHHHHHhCh-HhHHHHhhcCeEEEEehhhh----c---Cc-ccc-ceEEEEecccCCC----------HHHHHH
Confidence 0000 00000011 11122445566777765432 2 22 232 3899999999883 455666
Q ss_pred HHhhcCCCCeEEEEccc
Q 000324 1494 IASQVENKIRIVALSTS 1510 (1665)
Q Consensus 1494 i~~~~~~~~riI~lSAT 1510 (1665)
+.+....+.++|++.-+
T Consensus 139 ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 139 ILTRIGEGSKIIITGDP 155 (205)
T ss_dssp HHTTB-TT-EEEEEE--
T ss_pred HHcccCCCcEEEEecCc
Confidence 66777888888887643
No 321
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=97.58 E-value=0.0023 Score=82.85 Aligned_cols=128 Identities=20% Similarity=0.114 Sum_probs=84.7
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000324 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i 1420 (1665)
.|+++|--.--.+ +.+ -|..+.||-|||+++.+|+.-+... +. .+=+++...-||..=...+. .+-..+|+
T Consensus 78 r~ydVQliGglvL-h~G--~IAEMkTGEGKTLvAtLpayLnAL~---Gk--gVhVVTvNdYLA~RDae~mg-~vy~fLGL 148 (925)
T PRK12903 78 RPYDVQIIGGIIL-DLG--SVAEMKTGEGKTITSIAPVYLNALT---GK--GVIVSTVNEYLAERDAEEMG-KVFNFLGL 148 (925)
T ss_pred CcCchHHHHHHHH-hcC--CeeeecCCCCccHHHHHHHHHHHhc---CC--ceEEEecchhhhhhhHHHHH-HHHHHhCC
Confidence 4555554444333 322 4799999999999999998754444 22 45577777788876655444 55566899
Q ss_pred EEEEEeCCCccc-hhccCCCcEEEEChhhHHH-HHHhh----hccccCCCccEEEeecccccC
Q 000324 1421 RVVELTGETAMD-LKLLEKGQIIISTPEKWDA-LSRRW----KQRKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1421 ~v~~l~G~~~~~-~~~l~~~~IIV~TPe~l~~-l~r~~----~~~~~l~~v~llViDEaH~l~ 1477 (1665)
+|++...+.+.. .+..-.+||+.+|...|-. .+|.. ........+.+.||||+|.++
T Consensus 149 svG~i~~~~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 149 SVGINKANMDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred ceeeeCCCCChHHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 999998876654 3344578999999998632 33321 111233567889999999654
No 322
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=97.55 E-value=0.0019 Score=81.24 Aligned_cols=155 Identities=22% Similarity=0.298 Sum_probs=99.4
Q ss_pred CCCCCHHHHHHHHHHHc---CCCcEEEECCCCChHHHH--HHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 000324 1339 FKHFNPIQTQVFTVLYN---TDDNVLVAAPTGSGKTIC--SEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIK 1413 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~---~~dnvlv~ApTGSGKTl~--a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~ 1413 (1665)
+..+.|+|+..+..+++ .+.--|++-.-|=|||+- +.|+.|.+-.. -.+ .+|||||. .++.|+.++|. .
T Consensus 203 ~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k--~~~--paLIVCP~-Tii~qW~~E~~-~ 276 (923)
T KOG0387|consen 203 WSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGK--LTK--PALIVCPA-TIIHQWMKEFQ-T 276 (923)
T ss_pred HHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhccc--ccC--ceEEEccH-HHHHHHHHHHH-H
Confidence 45788999999988763 333478889999999964 55555555422 123 79999997 67889999999 4
Q ss_pred hcCCCCcEEEEEeCCCcc------------ch----hccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccC
Q 000324 1414 FGQGLGMRVVELTGETAM------------DL----KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1414 ~~~~~~i~v~~l~G~~~~------------~~----~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~ 1477 (1665)
+.. ..+|..++|..+. +. .....++|+|+|-+.+...- ....-..-+++|+||.|.|-
T Consensus 277 w~p--~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~----d~l~~~~W~y~ILDEGH~Ir 350 (923)
T KOG0387|consen 277 WWP--PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQG----DDLLGILWDYVILDEGHRIR 350 (923)
T ss_pred hCc--ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccC----cccccccccEEEecCccccc
Confidence 443 4688888886552 11 12335589999977654221 11112246899999999997
Q ss_pred CCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCC
Q 000324 1478 GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1478 ~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n 1513 (1665)
....... ....++....|||+..+++.|
T Consensus 351 Npns~is--------lackki~T~~RiILSGTPiQN 378 (923)
T KOG0387|consen 351 NPNSKIS--------LACKKIRTVHRIILSGTPIQN 378 (923)
T ss_pred CCccHHH--------HHHHhccccceEEeeCccccc
Confidence 6542211 122344556666555455555
No 323
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.54 E-value=0.0011 Score=84.99 Aligned_cols=127 Identities=22% Similarity=0.281 Sum_probs=81.9
Q ss_pred CCCCHHHHHHHHH---HHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 494 TQLNRVQSRVYKS---ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~---~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
.++.++|.+.+.. +|+++=|-|+.-.+|-|||...+--|.. ++.+....| --++|+|+-.|.+ +..+|
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitY-LmE~K~~~G-------P~LvivPlstL~N-W~~Ef 463 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITY-LMEHKQMQG-------PFLIIVPLSTLVN-WSSEF 463 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHH-HHHHcccCC-------CeEEeccccccCC-chhhc
Confidence 3788889888765 4677778999999999999876544443 444433222 2577899988875 23344
Q ss_pred HHhhccCCcEEEEEECCCccc----Hhh-hccccEEEeChhhHHHHHhhcCCCccccce--eEEEEeccccccc
Q 000324 571 SNRLQMYDVKVRELSGDQTLT----RQQ-IEETQIIVTTPEKWDIITRKSGDRTYTQLV--KLLIIDEIHLLHD 637 (1665)
Q Consensus 571 ~~~~~~~gi~V~~ltGd~~~~----~~~-~~~~~IiV~TPekld~l~r~~~~~~~l~~v--~liIiDEaH~l~d 637 (1665)
..+.. .+....+.|..... .+. ....+|+++|.|.. .+ +...++.| .++||||-|.|.+
T Consensus 464 ~kWaP--Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyi---ik---dk~lLsKI~W~yMIIDEGHRmKN 529 (1157)
T KOG0386|consen 464 PKWAP--SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYI---IK---DKALLSKISWKYMIIDEGHRMKN 529 (1157)
T ss_pred ccccc--ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHh---cC---CHHHHhccCCcceeecccccccc
Confidence 44322 45566666643322 222 25789999999963 22 22344444 5799999999964
No 324
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.49 E-value=0.00067 Score=88.62 Aligned_cols=68 Identities=31% Similarity=0.383 Sum_probs=56.2
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000324 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (1665)
..||+.|.+++..++...+.++|.||+|+|||.+..-.+.+.+.. +.+|++++|+...|.++.+++..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~-----------g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR-----------GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc-----------CCCEEEEcCcHHHHHHHHHHHHh
Confidence 478999999999998877889999999999998765544444432 34799999999999999988876
No 325
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.44 E-value=0.008 Score=73.83 Aligned_cols=192 Identities=16% Similarity=0.147 Sum_probs=105.8
Q ss_pred CCCcEEEEChhhHHHHHHh----hhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHH-----------------H
Q 000324 1437 EKGQIIISTPEKWDALSRR----WKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYI-----------------A 1495 (1665)
Q Consensus 1437 ~~~~IIV~TPe~l~~l~r~----~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i-----------------~ 1495 (1665)
.++|||||+|=-|-..+.. -....+++.|.++|+|.||.+.=..=.++..++..++.+ -
T Consensus 130 y~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ld 209 (442)
T PF06862_consen 130 YSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLD 209 (442)
T ss_pred ccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHc
Confidence 4679999999877665552 123347899999999999977522111222233322211 1
Q ss_pred hhcCCCCeEEEEcccCCCh-HHHHHHhcccCCcEEecCCCC--------CccceEEEEeecccchh----hHHHHhcChh
Q 000324 1496 SQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGV--------RPVPLEIHIQGVDITNF----EARMQAMTKP 1562 (1665)
Q Consensus 1496 ~~~~~~~riI~lSATl~n~-~dl~~wl~~~~~~~~~f~~~~--------rpv~l~i~i~~~~~~~~----~~~~~~~~k~ 1562 (1665)
.+...-.|+|++|+..... ..+-.--...-.+...+.+.. -.+++....+.++.... ..++....+.
T Consensus 210 g~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~ 289 (442)
T PF06862_consen 210 GQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKK 289 (442)
T ss_pred CcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHH
Confidence 1111248999999876442 222221000111111111111 11223333333333322 2223333333
Q ss_pred HHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCC
Q 000324 1563 TFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEG 1642 (1665)
Q Consensus 1563 ~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~ 1642 (1665)
.+..+.. -...+.+|||+||=-.=..+-..|. .-....+.+|.-
T Consensus 290 iLP~l~~-~~~~~~~LIfIPSYfDfVRlRN~lk-----------------------------------~~~~sF~~i~EY 333 (442)
T PF06862_consen 290 ILPQLKR-DSKMSGTLIFIPSYFDFVRLRNYLK-----------------------------------KENISFVQISEY 333 (442)
T ss_pred HHHHhhh-ccCCCcEEEEecchhhhHHHHHHHH-----------------------------------hcCCeEEEeccc
Confidence 3333332 1355679999999765555554441 223446788999
Q ss_pred CCHHHHHHHHHHHhcCCceEEE
Q 000324 1643 LNKTDQEVVSALFEAGKIKICY 1664 (1665)
Q Consensus 1643 m~~~dR~~v~~~F~~G~i~VLV 1664 (1665)
.+..+-..+-..|..|+.+||+
T Consensus 334 ts~~~isRAR~~F~~G~~~iLL 355 (442)
T PF06862_consen 334 TSNSDISRARSQFFHGRKPILL 355 (442)
T ss_pred CCHHHHHHHHHHHHcCCceEEE
Confidence 9999999999999999999997
No 326
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.40 E-value=0.0011 Score=78.57 Aligned_cols=167 Identities=22% Similarity=0.256 Sum_probs=105.1
Q ss_pred CCCHHHHHHHHHHHcCCC----cEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 495 QLNRVQSRVYKSALSSAD----NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~----nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
.|-|+|.+-+..+....+ --|+.-.-|.|||..+.-.++... .+...++++|+.||. |+.+++
T Consensus 184 ~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~------------~ra~tLVvaP~VAlm-QW~nEI 250 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEV------------DRAPTLVVAPTVALM-QWKNEI 250 (791)
T ss_pred cchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcc------------ccCCeeEEccHHHHH-HHHHHH
Confidence 344667766655433222 246778999999987765555432 133589999999985 556666
Q ss_pred HHhhccCCcEEEEEECCCc-ccHhhhccccEEEeChhhHHHHHhhcC-----------CCcccccee--EEEEecccccc
Q 000324 571 SNRLQMYDVKVRELSGDQT-LTRQQIEETQIIVTTPEKWDIITRKSG-----------DRTYTQLVK--LLIIDEIHLLH 636 (1665)
Q Consensus 571 ~~~~~~~gi~V~~ltGd~~-~~~~~~~~~~IiV~TPekld~l~r~~~-----------~~~~l~~v~--liIiDEaH~l~ 636 (1665)
..... -..+|..++|... .+-+.+.+++++.+|...+....|+.. ..+.+..++ -||+||||-+.
T Consensus 251 ~~~T~-gslkv~~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK 329 (791)
T KOG1002|consen 251 ERHTS-GSLKVYIYHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIK 329 (791)
T ss_pred HHhcc-CceEEEEEecccccCCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccc
Confidence 65443 3578888898654 334567899999999998888877721 234455554 59999999997
Q ss_pred cCCchHHHHHHHHHHHHHhhccCCeeEEEEcccCC-C-hH---HHHHHHhccc
Q 000324 637 DNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP-N-YE---DVALFLRVNL 684 (1665)
Q Consensus 637 d~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~-n-~~---dv~~~l~~~~ 684 (1665)
+.+..+-..+.+ + + ..+..+||.|.- | .. .+-+||+.+|
T Consensus 330 ~R~snTArAV~~-L----~----tt~rw~LSGTPLQNrigElySLiRFL~i~P 373 (791)
T KOG1002|consen 330 DRQSNTARAVFA-L----E----TTYRWCLSGTPLQNRIGELYSLIRFLNINP 373 (791)
T ss_pred cccccHHHHHHh-h----H----hhhhhhccCCcchhhHHHHHHHHHHHccCc
Confidence 643333322222 1 1 123478888842 3 11 3456666654
No 327
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=97.37 E-value=0.0069 Score=74.81 Aligned_cols=137 Identities=18% Similarity=0.220 Sum_probs=86.3
Q ss_pred CCCHHHHHHHHHH---HcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000324 495 QLNRVQSRVYKSA---LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~---l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (1665)
+|-.+|-+.+..+ |..+=|-|+.-.-|-|||...+-.+.+....+.-- | --++|+|--.| ..+++++.
T Consensus 567 tLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIw-G-------PFLVVtpaStL-~NWaqEis 637 (1185)
T KOG0388|consen 567 TLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIW-G-------PFLVVTPASTL-HNWAQEIS 637 (1185)
T ss_pred hhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCC-C-------ceEEeehHHHH-hHHHHHHH
Confidence 5667777776653 55666889999999999998865554444443211 2 35778887666 45667777
Q ss_pred HhhccCCcEEEEEECCCcccHh------------hhccccEEEeChhhHHHHHhhcCCCccccc--eeEEEEeccccccc
Q 000324 572 NRLQMYDVKVRELSGDQTLTRQ------------QIEETQIIVTTPEKWDIITRKSGDRTYTQL--VKLLIIDEIHLLHD 637 (1665)
Q Consensus 572 ~~~~~~gi~V~~ltGd~~~~~~------------~~~~~~IiV~TPekld~l~r~~~~~~~l~~--v~liIiDEaH~l~d 637 (1665)
+++. .++|.-+-|+.+-.+. .....||+|||...+ ++. ..++++ ..+.|+|||+.+-.
T Consensus 638 rFlP--~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlv--VtD----eky~qkvKWQYMILDEAQAIKS 709 (1185)
T KOG0388|consen 638 RFLP--SFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLV--VTD----EKYLQKVKWQYMILDEAQAIKS 709 (1185)
T ss_pred HhCc--cceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeee--ech----HHHHHhhhhhheehhHHHHhhh
Confidence 7665 4688888887653321 123678999988752 111 122333 35799999998865
Q ss_pred CCchHHHHHHH
Q 000324 638 NRGPVLESIVA 648 (1665)
Q Consensus 638 ~rg~~le~iv~ 648 (1665)
.....+..+++
T Consensus 710 SsS~RWKtLLs 720 (1185)
T KOG0388|consen 710 SSSSRWKTLLS 720 (1185)
T ss_pred hhhhHHHHHhh
Confidence 43333444443
No 328
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.36 E-value=0.00064 Score=83.33 Aligned_cols=80 Identities=20% Similarity=0.323 Sum_probs=64.3
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000324 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (1665)
Q Consensus 1338 ~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~ 1417 (1665)
++..+|.-|..|+..++...= .||++|+|+|||++..-.+.+.... ..+ .+|+.+|+.--++|....+.+
T Consensus 407 ~lpkLN~SQ~~AV~~VL~rpl-sLIQGPPGTGKTvtsa~IVyhl~~~--~~~--~VLvcApSNiAVDqLaeKIh~----- 476 (935)
T KOG1802|consen 407 NLPKLNASQSNAVKHVLQRPL-SLIQGPPGTGKTVTSATIVYHLARQ--HAG--PVLVCAPSNIAVDQLAEKIHK----- 476 (935)
T ss_pred CchhhchHHHHHHHHHHcCCc-eeeecCCCCCceehhHHHHHHHHHh--cCC--ceEEEcccchhHHHHHHHHHh-----
Confidence 578999999999999998544 8999999999999986655555444 344 899999999999999988772
Q ss_pred CCcEEEEEeC
Q 000324 1418 LGMRVVELTG 1427 (1665)
Q Consensus 1418 ~~i~v~~l~G 1427 (1665)
+|++|+.+..
T Consensus 477 tgLKVvRl~a 486 (935)
T KOG1802|consen 477 TGLKVVRLCA 486 (935)
T ss_pred cCceEeeeeh
Confidence 3577776654
No 329
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.36 E-value=0.0011 Score=73.91 Aligned_cols=64 Identities=23% Similarity=0.327 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHHHcCCCc-EEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHH
Q 000324 1341 HFNPIQTQVFTVLYNTDDN-VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll~~~dn-vlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~ 1409 (1665)
++++-|.+++..++.++++ +++.+|.|+|||.+. -.+...+.. .+. ++++++||...+....+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~--~g~--~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEA--AGK--RVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHH--TT----EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHh--CCC--eEEEECCcHHHHHHHHHh
Confidence 4789999999999876665 567799999999864 445556665 223 899999999888875554
No 330
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.33 E-value=0.0013 Score=73.45 Aligned_cols=134 Identities=20% Similarity=0.242 Sum_probs=93.9
Q ss_pred CCCCHHHHHHHHHHHcC--CCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000324 1340 KHFNPIQTQVFTVLYNT--DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll~~--~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~ 1417 (1665)
-..+|.|.++...+.+. +.|.+.++-.|.|||.+. +|++.....+ +. --+.+++| ++|..|.++.+..+|+..
T Consensus 22 iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI-~Pmla~~LAd--g~-~LvrviVp-k~Ll~q~~~~L~~~lg~l 96 (229)
T PF12340_consen 22 ILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVI-VPMLALALAD--GS-RLVRVIVP-KALLEQMRQMLRSRLGGL 96 (229)
T ss_pred ceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchH-HHHHHHHHcC--CC-cEEEEEcC-HHHHHHHHHHHHHHHHHH
Confidence 36899999999999863 468999999999999985 7877776663 22 13445555 579999999999999988
Q ss_pred CCcEEEEEeCCCccc--h-----------hccCCCcEEEEChhhHHHHHHhhhc----------------cccCCCccEE
Q 000324 1418 LGMRVVELTGETAMD--L-----------KLLEKGQIIISTPEKWDALSRRWKQ----------------RKYVQQVSLF 1468 (1665)
Q Consensus 1418 ~~i~v~~l~G~~~~~--~-----------~~l~~~~IIV~TPe~l~~l~r~~~~----------------~~~l~~v~ll 1468 (1665)
.+.+|..+.=+.... . ...+.+-|+++|||.+.++.-.+.. ...+.....=
T Consensus 97 ~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~rd 176 (229)
T PF12340_consen 97 LNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHSRD 176 (229)
T ss_pred hCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCe
Confidence 888877665433222 1 1224567999999998664221110 1123456667
Q ss_pred EeecccccCC
Q 000324 1469 IIDELHLIGG 1478 (1665)
Q Consensus 1469 ViDEaH~l~~ 1478 (1665)
|+||+|.+++
T Consensus 177 ilDEsDe~L~ 186 (229)
T PF12340_consen 177 ILDESDEILS 186 (229)
T ss_pred EeECchhccC
Confidence 9999997763
No 331
>PRK10536 hypothetical protein; Provisional
Probab=97.32 E-value=0.00045 Score=78.48 Aligned_cols=60 Identities=20% Similarity=0.226 Sum_probs=44.4
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHH
Q 000324 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (1665)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ra 561 (1665)
++...|..|...+..+. ..+.+++.||+|+|||+.+....++.+.... --++++.-|...
T Consensus 56 ~i~p~n~~Q~~~l~al~-~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~---------~~kIiI~RP~v~ 115 (262)
T PRK10536 56 PILARNEAQAHYLKAIE-SKQLIFATGEAGCGKTWISAAKAAEALIHKD---------VDRIIVTRPVLQ 115 (262)
T ss_pred cccCCCHHHHHHHHHHh-cCCeEEEECCCCCCHHHHHHHHHHHHHhcCC---------eeEEEEeCCCCC
Confidence 45667899999888654 4678999999999999999887776664321 225677767654
No 332
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.28 E-value=0.0013 Score=89.55 Aligned_cols=140 Identities=17% Similarity=0.189 Sum_probs=89.2
Q ss_pred CcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccc-hhcc
Q 000324 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD-LKLL 1436 (1665)
Q Consensus 1358 dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~-~~~l 1436 (1665)
...+|+=-||||||+.....+-..+.. ...+.+++|+-+++|-.|+.+.+. .|+....... ..+.... .+.+
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~---~~~~~v~fvvDR~dLd~Q~~~~f~-~~~~~~~~~~---~~~s~~~Lk~~l 346 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLEL---PKNPKVLFVVDRKDLDDQTSDEFQ-SFGKVAFNDP---KAESTSELKELL 346 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhc---cCCCeEEEEechHHHHHHHHHHHH-HHHHhhhhcc---cccCHHHHHHHH
Confidence 358999999999999976655443433 333499999999999999999999 6664321111 1111111 2233
Q ss_pred C--CCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh
Q 000324 1437 E--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA 1514 (1665)
Q Consensus 1437 ~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~ 1514 (1665)
+ ...|||+|..+|............-.+==+||+||||+-.... ...+|+... ++...+|||.|+--.
T Consensus 347 ~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G~------~~~~~~~~~----~~a~~~gFTGTPi~~ 416 (962)
T COG0610 347 EDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYGE------LAKLLKKAL----KKAIFIGFTGTPIFK 416 (962)
T ss_pred hcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccccH------HHHHHHHHh----ccceEEEeeCCcccc
Confidence 3 3489999999998766442111122233478999999864322 334444332 347899999997543
No 333
>PF13245 AAA_19: Part of AAA domain
Probab=97.27 E-value=0.00096 Score=62.00 Aligned_cols=61 Identities=25% Similarity=0.393 Sum_probs=43.7
Q ss_pred HHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 503 VYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 503 ~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
++..++.++.-++|.||.|||||....-.+...+..... .+.++++++|++..+.++.+++
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~-------~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARAD-------PGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC-------CCCeEEEECCCHHHHHHHHHHH
Confidence 455455544545669999999997776666666532111 1347999999999999988887
No 334
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.24 E-value=0.00063 Score=83.55 Aligned_cols=67 Identities=27% Similarity=0.399 Sum_probs=57.9
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000324 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (1665)
+.+++-|.+++..+++..+-+++.||+|+|||.....-|.+.+.+ +.+|++.+|+..-+..+.+++.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~-----------~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ-----------KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc-----------CCeEEEEcCchHHHHHHHHHhc
Confidence 478999999999999887778999999999999888877777765 3489999999999999888754
No 335
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.16 E-value=0.0022 Score=76.05 Aligned_cols=168 Identities=18% Similarity=0.235 Sum_probs=106.4
Q ss_pred CCCCHHHHHHHHHHHcCCC----cEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhc
Q 000324 1340 KHFNPIQTQVFTVLYNTDD----NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll~~~d----nvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~ 1415 (1665)
-.+-|+|.+-+..+....+ --++.-.-|.|||+-+...++.. ..+. ..|+++|+.+| .|+.+++. ++.
T Consensus 183 i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae----~~ra--~tLVvaP~VAl-mQW~nEI~-~~T 254 (791)
T KOG1002|consen 183 IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAE----VDRA--PTLVVAPTVAL-MQWKNEIE-RHT 254 (791)
T ss_pred ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhc----cccC--CeeEEccHHHH-HHHHHHHH-Hhc
Confidence 3567888887766543222 24666789999999876555542 2223 69999999998 57777777 554
Q ss_pred CCCCcEEEEEeCCCc-cchhccCCCcEEEEChhhHHHHHHhhhc-----------cccCCC--ccEEEeecccccCCCCc
Q 000324 1416 QGLGMRVVELTGETA-MDLKLLEKGQIIISTPEKWDALSRRWKQ-----------RKYVQQ--VSLFIIDELHLIGGQGG 1481 (1665)
Q Consensus 1416 ~~~~i~v~~l~G~~~-~~~~~l~~~~IIV~TPe~l~~l~r~~~~-----------~~~l~~--v~llViDEaH~l~~~~g 1481 (1665)
. ...+|..++|... .+.+.+.+.++|++|...+.+..|+-.. ...+.+ .-.||+||||-|-+...
T Consensus 255 ~-gslkv~~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~s 333 (791)
T KOG1002|consen 255 S-GSLKVYIYHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQS 333 (791)
T ss_pred c-CceEEEEEecccccCCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccccccc
Confidence 4 4578888888643 3466778889999999998887765211 112333 45689999999976443
Q ss_pred hhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh--H---HHHHHhcccC
Q 000324 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANA--K---DLGEWIGATS 1525 (1665)
Q Consensus 1482 ~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~--~---dl~~wl~~~~ 1525 (1665)
..-+.+. .+ . ....++||.|+-.. . .+..+|...+
T Consensus 334 nTArAV~-~L-------~-tt~rw~LSGTPLQNrigElySLiRFL~i~P 373 (791)
T KOG1002|consen 334 NTARAVF-AL-------E-TTYRWCLSGTPLQNRIGELYSLIRFLNINP 373 (791)
T ss_pred cHHHHHH-hh-------H-hhhhhhccCCcchhhHHHHHHHHHHHccCc
Confidence 2222222 11 1 23347888886432 1 3445555544
No 336
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.11 E-value=0.0026 Score=83.20 Aligned_cols=68 Identities=19% Similarity=0.232 Sum_probs=55.7
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHH
Q 000324 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEI 1412 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~ 1412 (1665)
..+|+.|.+|+..++...+.++|.+|+|+|||.+..-.+...+.. +. ++++++||..-++++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~---g~--~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR---GL--RVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc---CC--CEEEEcCcHHHHHHHHHHHHh
Confidence 578999999999998877889999999999998765544444433 22 899999999999999888774
No 337
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.01 E-value=0.002 Score=86.09 Aligned_cols=72 Identities=21% Similarity=0.342 Sum_probs=61.5
Q ss_pred CCCCCHHHHHHHHHHH---cCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHH
Q 000324 1339 FKHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEI 1412 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll---~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~ 1412 (1665)
|..++|.|.+....++ ..+.++++.||||+|||++.+.|.+......+.. ++++|.+.|..=..|..+++++
T Consensus 8 y~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~--~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 8 YEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEV--RKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcccc--ccEEEEcccchHHHHHHHHHHh
Confidence 7778999999988866 3567799999999999999999999877653322 3999999999999999999994
No 338
>PRK10536 hypothetical protein; Provisional
Probab=96.96 E-value=0.012 Score=67.08 Aligned_cols=144 Identities=15% Similarity=0.198 Sum_probs=83.5
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHH----------HHH
Q 000324 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK----------ERY 1407 (1665)
Q Consensus 1338 ~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~----------Q~~ 1407 (1665)
++.-.|..|...+..+.+ .+.+++.+|+|+|||..+....+..+... .-. ++++.-|+.+..+ +.+
T Consensus 56 ~i~p~n~~Q~~~l~al~~-~~lV~i~G~aGTGKT~La~a~a~~~l~~~-~~~--kIiI~RP~v~~ge~LGfLPG~~~eK~ 131 (262)
T PRK10536 56 PILARNEAQAHYLKAIES-KQLIFATGEAGCGKTWISAAKAAEALIHK-DVD--RIIVTRPVLQADEDLGFLPGDIAEKF 131 (262)
T ss_pred cccCCCHHHHHHHHHHhc-CCeEEEECCCCCCHHHHHHHHHHHHHhcC-Cee--EEEEeCCCCCchhhhCcCCCCHHHHH
Confidence 355678899999998876 56899999999999999988888766542 222 6777777754321 222
Q ss_pred HHHHHHhcCCCCcEEEEEeCCCccchhc--cCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHH
Q 000324 1408 RDWEIKFGQGLGMRVVELTGETAMDLKL--LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE 1485 (1665)
Q Consensus 1408 ~~~~~~~~~~~~i~v~~l~G~~~~~~~~--l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e 1485 (1665)
.-|..-+-..+.. +.|.... ... .+.+.|-|.... ++|. + .+ +-++||+|||+.+.
T Consensus 132 ~p~~~pi~D~L~~----~~~~~~~-~~~~~~~~~~Iei~~l~----ymRG---r-tl-~~~~vIvDEaqn~~-------- 189 (262)
T PRK10536 132 APYFRPVYDVLVR----RLGASFM-QYCLRPEIGKVEIAPFA----YMRG---R-TF-ENAVVILDEAQNVT-------- 189 (262)
T ss_pred HHHHHHHHHHHHH----HhChHHH-HHHHHhccCcEEEecHH----HhcC---C-cc-cCCEEEEechhcCC--------
Confidence 2222111111100 0111111 111 134556666532 3332 2 22 34899999999995
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcc
Q 000324 1486 VIVSRMRYIASQVENKIRIVALST 1509 (1665)
Q Consensus 1486 ~~~srl~~i~~~~~~~~riI~lSA 1509 (1665)
...++.+.+..+.+.++|+..-
T Consensus 190 --~~~~k~~ltR~g~~sk~v~~GD 211 (262)
T PRK10536 190 --AAQMKMFLTRLGENVTVIVNGD 211 (262)
T ss_pred --HHHHHHHHhhcCCCCEEEEeCC
Confidence 2344555556677888877653
No 339
>PF13245 AAA_19: Part of AAA domain
Probab=96.93 E-value=0.0034 Score=58.35 Aligned_cols=60 Identities=22% Similarity=0.197 Sum_probs=41.7
Q ss_pred HHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhh-cCCCCeEEEEEcccHHHHHHHHHHH
Q 000324 1349 VFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA-SETGVMRAVYIAPLEALAKERYRDW 1410 (1665)
Q Consensus 1349 a~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~-~~~~~~r~l~I~PtreLa~Q~~~~~ 1410 (1665)
|+...+.++.-++|.+|+|||||....-.+...+... .... ++++++|++..++++.+++
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~--~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGK--RVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCC--eEEEECCCHHHHHHHHHHH
Confidence 3443334344355699999999977766666666421 1233 8999999999999888766
No 340
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.92 E-value=0.003 Score=78.29 Aligned_cols=175 Identities=21% Similarity=0.214 Sum_probs=108.9
Q ss_pred CCCHHHHHHHHHHHc----CCCcEEEECCCCChHHHHHHHHHHHHHHhh------cCCCCeEEEEEcccHHHHHHHHHHH
Q 000324 1341 HFNPIQTQVFTVLYN----TDDNVLVAAPTGSGKTICSEFAILRNHQKA------SETGVMRAVYIAPLEALAKERYRDW 1410 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll~----~~dnvlv~ApTGSGKTl~a~l~il~~l~~~------~~~~~~r~l~I~PtreLa~Q~~~~~ 1410 (1665)
.+-|.|.+++..+.- .++-.|+.-.-|-|||+...-.|+..-... .+... .+|||||- .|+.|+..++
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~-~TLII~Pa-Sli~qW~~Ev 402 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESAS-KTLIICPA-SLIHQWEAEV 402 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccC-CeEEeCcH-HHHHHHHHHH
Confidence 577899999987763 233478888899999997655444322211 11111 58999996 6889999999
Q ss_pred HHHhcCCCCcEEEEEeCCCcc--chhccCCCcEEEEChhhHHH----HHHhhhccccCCC--ccEEEeecccccCCCCch
Q 000324 1411 EIKFGQGLGMRVVELTGETAM--DLKLLEKGQIIISTPEKWDA----LSRRWKQRKYVQQ--VSLFIIDELHLIGGQGGP 1482 (1665)
Q Consensus 1411 ~~~~~~~~~i~v~~l~G~~~~--~~~~l~~~~IIV~TPe~l~~----l~r~~~~~~~l~~--v~llViDEaH~l~~~~g~ 1482 (1665)
.+++... -++|..++|.... ..+.++..||||+|..-+.. -+........+.+ ...||+||||.+-....
T Consensus 403 ~~rl~~n-~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~t- 480 (901)
T KOG4439|consen 403 ARRLEQN-ALSVYLYHGPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNSNT- 480 (901)
T ss_pred HHHHhhc-ceEEEEecCCccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcccch-
Confidence 9888754 5789999997643 35677889999999765543 1111111122333 35799999999965431
Q ss_pred hHHHHHHHHHHHHhhcCCCCeEEEEcccCC-Ch-H---HHHHHhcccCCc
Q 000324 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLA-NA-K---DLGEWIGATSHG 1527 (1665)
Q Consensus 1483 ~~e~~~srl~~i~~~~~~~~riI~lSATl~-n~-~---dl~~wl~~~~~~ 1527 (1665)
.-...+-+++ ...| .++|+|+- |. - .+..|+++.+..
T Consensus 481 q~S~AVC~L~-------a~~R-WclTGTPiqNn~~DvysLlrFLr~~pF~ 522 (901)
T KOG4439|consen 481 QCSKAVCKLS-------AKSR-WCLTGTPIQNNLWDVYSLLRFLRCPPFG 522 (901)
T ss_pred hHHHHHHHHh-------hcce-eecccCccccchhHHHHHHHHhcCCCcc
Confidence 1112222222 2333 67777753 32 1 355666666543
No 341
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.0078 Score=72.57 Aligned_cols=152 Identities=16% Similarity=0.249 Sum_probs=96.3
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEE-EECCCCChH--HHHHHHHHHHHHHhhc------------C--------------CC
Q 000324 1339 FKHFNPIQTQVFTVLYNTDDNVL-VAAPTGSGK--TICSEFAILRNHQKAS------------E--------------TG 1389 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~~~dnvl-v~ApTGSGK--Tl~a~l~il~~l~~~~------------~--------------~~ 1389 (1665)
-..+|+.|.+.+..+.+-+| ++ ....-+.|+ +-+|.+-+++|+.... . -.
T Consensus 214 s~pltalQ~~L~~~m~~YrD-l~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 214 SEPLTALQKELFKIMFNYRD-LLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred cCcchHHHHHHHHHHHhhhh-hccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 35789999999999887666 43 222334455 5678888888876531 0 01
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHhc-CCCCcEEE--------EEeC---------------------CCccc-------
Q 000324 1390 VMRAVYIAPLEALAKERYRDWEIKFG-QGLGMRVV--------ELTG---------------------ETAMD------- 1432 (1665)
Q Consensus 1390 ~~r~l~I~PtreLa~Q~~~~~~~~~~-~~~~i~v~--------~l~G---------------------~~~~~------- 1432 (1665)
.|++||+||+|+-|..+.+.+...+. ...|+..+ .+.| ++...
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 37999999999999999999886633 22221111 1122 11110
Q ss_pred ----hh---ccCCCcEEEEChhhHHHHHHhh----hccccCCCccEEEeecccccCCCCchhHHHHHHHHHHH
Q 000324 1433 ----LK---LLEKGQIIISTPEKWDALSRRW----KQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYI 1494 (1665)
Q Consensus 1433 ----~~---~l~~~~IIV~TPe~l~~l~r~~----~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i 1494 (1665)
.+ ....+||+||+|=-+..++... +...+++.+.++|||-+|.++-.. ||.++.-+..+
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QN---wEhl~~ifdHL 442 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQN---WEHLLHIFDHL 442 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhh---HHHHHHHHHHh
Confidence 00 2346799999998887766521 122368899999999999886432 55555444444
No 342
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=96.85 E-value=0.0043 Score=63.89 Aligned_cols=66 Identities=26% Similarity=0.286 Sum_probs=54.8
Q ss_pred HHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCC
Q 000324 1565 TAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLN 1644 (1665)
Q Consensus 1565 ~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~ 1644 (1665)
..+......++++||||+++.+++.++..|.. ...++.++||+++
T Consensus 19 ~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~-----------------------------------~~~~~~~~~~~~~ 63 (131)
T cd00079 19 ELLKEHLKKGGKVLIFCPSKKMLDELAELLRK-----------------------------------PGIKVAALHGDGS 63 (131)
T ss_pred HHHHhcccCCCcEEEEeCcHHHHHHHHHHHHh-----------------------------------cCCcEEEEECCCC
Confidence 33434433577899999999999999977731 3567999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEC
Q 000324 1645 KTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1645 ~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
+.+|..+.+.|++|..+||||
T Consensus 64 ~~~~~~~~~~f~~~~~~ili~ 84 (131)
T cd00079 64 QEEREEVLKDFREGEIVVLVA 84 (131)
T ss_pred HHHHHHHHHHHHcCCCcEEEE
Confidence 999999999999999999987
No 343
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=96.80 E-value=0.0067 Score=67.89 Aligned_cols=145 Identities=21% Similarity=0.289 Sum_probs=92.4
Q ss_pred CCChhhHhhcCCCCCCCHHHHHHHHHHHcC--CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcc
Q 000324 481 EMPEWAQPAFKGMTQLNRVQSRVYKSALSS--ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1665)
Q Consensus 481 ~Lp~~~~~~f~g~~~l~~iQ~~~i~~~l~~--~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (1665)
+-|+|+---+.+--.+++.|.++....+.. +.|.+...-+|.|||.|. +|++..+.... ..-+.+++|
T Consensus 9 ~~P~wLl~E~e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI-~Pmla~~LAdg---------~~LvrviVp 78 (229)
T PF12340_consen 9 EYPDWLLFEIESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVI-VPMLALALADG---------SRLVRVIVP 78 (229)
T ss_pred hChHHHHHHHHcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchH-HHHHHHHHcCC---------CcEEEEEcC
Confidence 457776655544447999999999988864 578999999999999876 67776665431 123444455
Q ss_pred cHHHHHHHHHHHHHhhccC-CcEEE--EEECCCcccHh-----------hhccccEEEeChhhHHHHHhhcC------C-
Q 000324 559 MKALVAEVVGNLSNRLQMY-DVKVR--ELSGDQTLTRQ-----------QIEETQIIVTTPEKWDIITRKSG------D- 617 (1665)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~-gi~V~--~ltGd~~~~~~-----------~~~~~~IiV~TPekld~l~r~~~------~- 617 (1665)
++|..|....+..+++.. +-+|. .+.-+...+.. ......|+++|||.+.++.-+.. .
T Consensus 79 -k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~ 157 (229)
T PF12340_consen 79 -KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKP 157 (229)
T ss_pred -HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCH
Confidence 689999999999888743 33333 33344444332 12356699999998533321111 0
Q ss_pred ---------CccccceeEEEEecccccc
Q 000324 618 ---------RTYTQLVKLLIIDEIHLLH 636 (1665)
Q Consensus 618 ---------~~~l~~v~liIiDEaH~l~ 636 (1665)
..+++....=|+||+|.+.
T Consensus 158 ~~~~~l~~~q~~l~~~~rdilDEsDe~L 185 (229)
T PF12340_consen 158 EEARELLKIQKWLDEHSRDILDESDEIL 185 (229)
T ss_pred HHHHHHHHHHHHHHhcCCeEeECchhcc
Confidence 1233444556888888654
No 344
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.79 E-value=0.0026 Score=69.11 Aligned_cols=128 Identities=20% Similarity=0.318 Sum_probs=75.4
Q ss_pred CCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHH
Q 000324 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (1665)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v 812 (1665)
++.+|||++|.+..+.+...+....... ++.++.. ...++..+
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~-----------------------------------~~~v~~q--~~~~~~~~ 51 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEK-----------------------------------GIPVFVQ--GSKSRDEL 51 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-E-----------------------------------TSCEEES--TCCHHHHH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccc-----------------------------------cceeeec--CcchHHHH
Confidence 5899999999998888877665432111 1122222 35678889
Q ss_pred HHHHhCCCCCeEEecc--ccccccCCCc--eEEEEecccccCCCCC----------------Cc----ccCCHHHHHhhh
Q 000324 813 EDLFGDGHVQVLVSTA--TLAWGVNLPA--HTVIIKGTQIYNPEKG----------------AW----TELSPLDIMQML 868 (1665)
Q Consensus 813 ~~~F~~g~i~VLVaT~--tla~GVdlP~--v~vVI~~t~~yd~~~g----------------~~----~~~s~~~~~Qr~ 868 (1665)
.+.|+.+.-.||+|+. .+..|||+|+ .+.||-...||-++.. .+ .+.....+.|.+
T Consensus 52 l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~ 131 (167)
T PF13307_consen 52 LEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAI 131 (167)
T ss_dssp HHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHH
T ss_pred HHHHHhccCeEEEEEecccEEEeecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhc
Confidence 9999999999999998 9999999996 4344444455543321 01 112345677999
Q ss_pred cccCCCCCCCceEEEEEeCCCcHHHHHHhh
Q 000324 869 GRAGRPQYDSYGEGIIITGHSELRYYLSLM 898 (1665)
Q Consensus 869 GRAGR~g~d~~G~~iil~~~~~~~~y~~ll 898 (1665)
||+-|.. +..|..+++-..-....|.+.+
T Consensus 132 GR~iR~~-~D~g~i~llD~R~~~~~y~~~l 160 (167)
T PF13307_consen 132 GRLIRSE-DDYGVIILLDSRFLSKRYGKYL 160 (167)
T ss_dssp HCC--ST-T-EEEEEEESGGGGGHHHHHH-
T ss_pred Ccceecc-CCcEEEEEEcCccccchhhhcC
Confidence 9999975 3467666665543334454443
No 345
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.76 E-value=0.0047 Score=81.95 Aligned_cols=83 Identities=17% Similarity=0.055 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHHH---cC-----CCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHH
Q 000324 1341 HFNPIQTQVFTVLY---NT-----DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEI 1412 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll---~~-----~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~ 1412 (1665)
.+++-|.+....++ .+ +..++|-||||+|||++|++|++..... .+. ++||=+.|+.|-+|....=--
T Consensus 25 e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~--~~k--~vVIST~T~~LQeQL~~kDlP 100 (697)
T PRK11747 25 IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARA--EKK--KLVISTATVALQEQLVSKDLP 100 (697)
T ss_pred CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHH--cCC--eEEEEcCCHHHHHHHHhhhhh
Confidence 68999999776665 44 3568899999999999999999876554 234 899999999999998643221
Q ss_pred HhcCCC--CcEEEEEeC
Q 000324 1413 KFGQGL--GMRVVELTG 1427 (1665)
Q Consensus 1413 ~~~~~~--~i~v~~l~G 1427 (1665)
.+.+.+ .++++.+.|
T Consensus 101 ~l~~~l~~~~~~~llKG 117 (697)
T PRK11747 101 LLLKISGLDFKFTLAKG 117 (697)
T ss_pred HHHHHcCCCceEEEEcC
Confidence 333322 355555543
No 346
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=96.76 E-value=0.02 Score=66.52 Aligned_cols=162 Identities=20% Similarity=0.209 Sum_probs=99.4
Q ss_pred CCCHHHHHHHHHHHc---------CCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHH
Q 000324 1341 HFNPIQTQVFTVLYN---------TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll~---------~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~ 1411 (1665)
.++..|-+++-...+ .+.-.+++=.||.||.....-.|+.+|.+. .. |+|+|..+..|-.+..++|+
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G--r~--r~vwvS~s~dL~~Da~RDl~ 112 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG--RK--RAVWVSVSNDLKYDAERDLR 112 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC--CC--ceEEEECChhhhhHHHHHHH
Confidence 456666666544321 233478888999999988878888888873 22 79999999999999999999
Q ss_pred HHhcCCCCcEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhh---hccc-----cC--CCccEEEeecccccCCCCc
Q 000324 1412 IKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRW---KQRK-----YV--QQVSLFIIDELHLIGGQGG 1481 (1665)
Q Consensus 1412 ~~~~~~~~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~---~~~~-----~l--~~v~llViDEaH~l~~~~g 1481 (1665)
-++.. .+.+..+..-...+...+ ...||.+|-..|..-.+.. ..|. .+ ..=.+||+||||...+..+
T Consensus 113 -DIG~~-~i~v~~l~~~~~~~~~~~-~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~ 189 (303)
T PF13872_consen 113 -DIGAD-NIPVHPLNKFKYGDIIRL-KEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSS 189 (303)
T ss_pred -HhCCC-cccceechhhccCcCCCC-CCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCc
Confidence 45432 333333332111111111 2359999988887664310 1110 01 1236899999998865322
Q ss_pred -----hhHHHHHHHHHHHHhhcCCCCeEEEEcccCCC
Q 000324 1482 -----PVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1482 -----~~~e~~~srl~~i~~~~~~~~riI~lSATl~n 1513 (1665)
......+. .+..++ ++.|+|..|||-+.
T Consensus 190 ~~~~~sk~g~avl---~LQ~~L-P~ARvvY~SATgas 222 (303)
T PF13872_consen 190 GSKKPSKTGIAVL---ELQNRL-PNARVVYASATGAS 222 (303)
T ss_pred cCccccHHHHHHH---HHHHhC-CCCcEEEecccccC
Confidence 22222332 333344 46789999999653
No 347
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=96.75 E-value=0.0044 Score=80.14 Aligned_cols=138 Identities=15% Similarity=0.217 Sum_probs=93.6
Q ss_pred CCCCHHHHHHHHH---HHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhc-CCCCeEEEEEcccHHHHHHHHHHHHHHhc
Q 000324 1340 KHFNPIQTQVFTV---LYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~---ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~-~~~~~r~l~I~PtreLa~Q~~~~~~~~~~ 1415 (1665)
..++.+|..-++. +|+.+=|-|+.-.-|-|||+-- +.+|.|+.... +-| --||||||--+.+ +.-+|+ +|+
T Consensus 614 GqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQt-ISllAhLACeegnWG--PHLIVVpTsviLn-WEMElK-Rwc 688 (1958)
T KOG0391|consen 614 GQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQT-ISLLAHLACEEGNWG--PHLIVVPTSVILN-WEMELK-RWC 688 (1958)
T ss_pred HHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHH-HHHHHHHHhcccCCC--CceEEeechhhhh-hhHHHh-hhC
Confidence 3678889887765 6777888999999999999875 45555665532 333 4688899965544 444555 665
Q ss_pred CCCCcEEEEEeCCCccc---hhccCCC---cEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHH
Q 000324 1416 QGLGMRVVELTGETAMD---LKLLEKG---QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488 (1665)
Q Consensus 1416 ~~~~i~v~~l~G~~~~~---~~~l~~~---~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~ 1488 (1665)
. |++|..++|..... .+-+.++ ||-|++...+..-.+.++. .+..++|+||+|.|-++....|+.++
T Consensus 689 P--glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AFkr----krWqyLvLDEaqnIKnfksqrWQAll 761 (1958)
T KOG0391|consen 689 P--GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAFKR----KRWQYLVLDEAQNIKNFKSQRWQALL 761 (1958)
T ss_pred C--cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHHHh----hccceeehhhhhhhcchhHHHHHHHh
Confidence 4 78999999975443 2222222 8888887766544433332 25679999999999876655555554
No 348
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.71 E-value=0.017 Score=74.68 Aligned_cols=154 Identities=13% Similarity=0.168 Sum_probs=85.4
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHh-hcCCCCeEEEEEcccHHHHHHHHHH
Q 000324 1331 LYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQK-ASETGVMRAVYIAPLEALAKERYRD 1409 (1665)
Q Consensus 1331 ~~~~l~~~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~-~~~~~~~r~l~I~PtreLa~Q~~~~ 1409 (1665)
.+..++.... -.+.|+.|+..++.+ .-.+|.++.|+|||.+..-.+ ..+.. .+..+.+++++.+||---+..+.+.
T Consensus 136 ~l~~~~~~~~-~~~~Qk~A~~~al~~-~~~vitGgpGTGKTt~v~~ll-~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~ 212 (586)
T TIGR01447 136 ILENLFPLLN-EQNWQKVAVALALKS-NFSLITGGPGTGKTTTVARLL-LALVKQSPKQGKLRIALAAPTGKAAARLAES 212 (586)
T ss_pred HHHHhhcccc-ccHHHHHHHHHHhhC-CeEEEEcCCCCCHHHHHHHHH-HHHHHhccccCCCcEEEECCcHHHHHHHHHH
Confidence 3445544222 237999999999885 448999999999998753322 22222 1111124899999998887776666
Q ss_pred HHHHhcCCCCcEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHh---hh-ccccCCCccEEEeecccccCCCCchhHH
Q 000324 1410 WEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRR---WK-QRKYVQQVSLFIIDELHLIGGQGGPVLE 1485 (1665)
Q Consensus 1410 ~~~~~~~~~~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~---~~-~~~~l~~v~llViDEaH~l~~~~g~~~e 1485 (1665)
....+... +.. . + ....-.+-..|-.++...... +. ...+.-.+++|||||+=++..
T Consensus 213 ~~~~~~~l-~~~-----~----~--~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~------- 273 (586)
T TIGR01447 213 LRKAVKNL-AAA-----E----A--LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDL------- 273 (586)
T ss_pred HHhhhccc-ccc-----h----h--hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCH-------
Confidence 55332211 100 0 0 000001113343333322110 00 112234689999999998851
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcc
Q 000324 1486 VIVSRMRYIASQVENKIRIVALST 1509 (1665)
Q Consensus 1486 ~~~srl~~i~~~~~~~~riI~lSA 1509 (1665)
.-|..+...++...|+|++.=
T Consensus 274 ---~l~~~ll~al~~~~rlIlvGD 294 (586)
T TIGR01447 274 ---PLMAKLLKALPPNTKLILLGD 294 (586)
T ss_pred ---HHHHHHHHhcCCCCEEEEECC
Confidence 233444455677899998873
No 349
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.71 E-value=0.016 Score=75.21 Aligned_cols=85 Identities=20% Similarity=0.210 Sum_probs=55.5
Q ss_pred hhhHhhcCCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHH
Q 000324 484 EWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563 (1665)
Q Consensus 484 ~~~~~~f~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa 563 (1665)
..+...|..-....+.|+.++..++.+ .-++|.|++|+|||.+.. .++..+..... ....+|++++||---|
T Consensus 141 ~~l~~lf~~~~~~~d~Qk~Av~~a~~~-~~~vItGgpGTGKTt~v~-~ll~~l~~~~~------~~~~~i~l~APTgkAA 212 (615)
T PRK10875 141 QTLDALFGPVTDEVDWQKVAAAVALTR-RISVISGGPGTGKTTTVA-KLLAALIQLAD------GERCRIRLAAPTGKAA 212 (615)
T ss_pred HHHHHhcCcCCCCCHHHHHHHHHHhcC-CeEEEEeCCCCCHHHHHH-HHHHHHHHhcC------CCCcEEEEECCcHHHH
Confidence 344444521112458999999988765 458999999999998652 22333322110 0235788999999999
Q ss_pred HHHHHHHHHhhcc
Q 000324 564 AEVVGNLSNRLQM 576 (1665)
Q Consensus 564 ~q~~~~~~~~~~~ 576 (1665)
..+.+........
T Consensus 213 ~rL~e~~~~~~~~ 225 (615)
T PRK10875 213 ARLTESLGKALRQ 225 (615)
T ss_pred HHHHHHHHhhhhc
Confidence 9888877665443
No 350
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=96.70 E-value=0.028 Score=71.09 Aligned_cols=234 Identities=16% Similarity=0.242 Sum_probs=130.8
Q ss_pred CCHHHHHHHH---HHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000324 1342 FNPIQTQVFT---VLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (1665)
Q Consensus 1342 ~~~iQ~qa~~---~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~ 1418 (1665)
+.++|.--++ .+|+.+=|.|+.-.-|-|||+-. ++.+..|.+....+ .-|||||.--| +-+.+++. +|++
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQv-IaFlayLkq~g~~g--pHLVVvPsSTl-eNWlrEf~-kwCP-- 472 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQV-IAFLAYLKQIGNPG--PHLVVVPSSTL-ENWLREFA-KWCP-- 472 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhHH-HHHHHHHHHcCCCC--CcEEEecchhH-HHHHHHHH-HhCC--
Confidence 5566654444 45566667899999999999764 44455555533333 57889998665 45666666 6665
Q ss_pred CcEEEEEeCCCccchh----cc---CCCcEEEEChhhHHH------HHHhhhccccCCCccEEEeecccccCCCCchhHH
Q 000324 1419 GMRVVELTGETAMDLK----LL---EKGQIIISTPEKWDA------LSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE 1485 (1665)
Q Consensus 1419 ~i~v~~l~G~~~~~~~----~l---~~~~IIV~TPe~l~~------l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e 1485 (1665)
.++|..++|......+ +- ...+|+|+|-.-... ++++ ++++++|+||.|++-......|.
T Consensus 473 sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~-------~~~n~viyDEgHmLKN~~SeRy~ 545 (941)
T KOG0389|consen 473 SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKN-------QKFNYVIYDEGHMLKNRTSERYK 545 (941)
T ss_pred ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHh-------ccccEEEecchhhhhccchHHHH
Confidence 5789999997654422 11 144899999765421 2222 46889999999999765544444
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcccCCC-hHHHHHHhcccCCcEEecCCCC-------CccceEEEEe-ecccchhhHHH
Q 000324 1486 VIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGV-------RPVPLEIHIQ-GVDITNFEARM 1556 (1665)
Q Consensus 1486 ~~~srl~~i~~~~~~~~riI~lSATl~n-~~dl~~wl~~~~~~~~~f~~~~-------rpv~l~i~i~-~~~~~~~~~~~ 1556 (1665)
.+++ .+.+.|+++...+|.| -.++...|.-.-..+|.-.-.. +..+ .-.+. ..-....-.+.
T Consensus 546 ~LM~--------I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~-d~d~e~~~l~qerIsrA 616 (941)
T KOG0389|consen 546 HLMS--------INANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTS-DGDIENALLSQERISRA 616 (941)
T ss_pred Hhcc--------ccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCc-cchhhHHHHHHHHHHHH
Confidence 4332 2456666555555555 3344433322112222211000 0000 00000 00001122333
Q ss_pred HhcChh-----HHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhc
Q 000324 1557 QAMTKP-----TFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYS 1598 (1665)
Q Consensus 1557 ~~~~k~-----~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~ 1598 (1665)
..|.+| ....++..+-+..+.|.||.=.+.=+.++..++...
T Consensus 617 K~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~ 663 (941)
T KOG0389|consen 617 KTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELY 663 (941)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHH
Confidence 344433 234455565666779999987777777777776544
No 351
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.68 E-value=0.0093 Score=61.66 Aligned_cols=119 Identities=19% Similarity=0.290 Sum_probs=57.6
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEE-cccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchhc
Q 000324 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI-APLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKL 1435 (1665)
Q Consensus 1357 ~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I-~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~ 1435 (1665)
+..++|.+|+|+|||.+...-+-...........+.++++ +|...-.......+...++.....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--------------- 68 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--------------- 68 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS---------------
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc---------------
Confidence 4458999999999999876554433322110112244443 443332445555555455432111
Q ss_pred cCCCcEEEEChhhHHHHH-HhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcc
Q 000324 1436 LEKGQIIISTPEKWDALS-RRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALST 1509 (1665)
Q Consensus 1436 l~~~~IIV~TPe~l~~l~-r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSA 1509 (1665)
-.++..+...+ +.+.. ....+|||||+|.+. . ..++..++.+.. ..++++|+.+.
T Consensus 69 -------~~~~~~l~~~~~~~l~~----~~~~~lviDe~~~l~--~----~~~l~~l~~l~~--~~~~~vvl~G~ 124 (131)
T PF13401_consen 69 -------RQTSDELRSLLIDALDR----RRVVLLVIDEADHLF--S----DEFLEFLRSLLN--ESNIKVVLVGT 124 (131)
T ss_dssp -------TS-HHHHHHHHHHHHHH----CTEEEEEEETTHHHH--T----HHHHHHHHHHTC--SCBEEEEEEES
T ss_pred -------cCCHHHHHHHHHHHHHh----cCCeEEEEeChHhcC--C----HHHHHHHHHHHh--CCCCeEEEEEC
Confidence 11333332222 22221 123799999999974 1 335555555543 45666555443
No 352
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.62 E-value=0.0041 Score=74.77 Aligned_cols=123 Identities=21% Similarity=0.214 Sum_probs=76.8
Q ss_pred CCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc
Q 000324 496 LNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ 575 (1665)
Q Consensus 496 l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~ 575 (1665)
||+-|.+++.. .+.+++|.|+.|||||.+...-++..+..... +..+|+++++|++.|.++..++...+.
T Consensus 1 l~~eQ~~~i~~---~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~-------~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 1 LTDEQRRIIRS---TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGV-------PPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp S-HHHHHHHHS----SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSS-------TGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC---CCCCEEEEeCCCCCchHHHHHHHHHhhccccC-------ChHHheecccCHHHHHHHHHHHHHhcC
Confidence 58889999986 45679999999999999988888877765421 244799999999999999999998765
Q ss_pred cCCcEEEEEECCCcccHhhhccccEEEeChhhH-HHHHhhc-CCCccccceeEEEEeccc
Q 000324 576 MYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKS-GDRTYTQLVKLLIIDEIH 633 (1665)
Q Consensus 576 ~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekl-d~l~r~~-~~~~~l~~v~liIiDEaH 633 (1665)
..+... ..+..+.........+.|+|-..| ..+++.. ...... -.+-|+|+..
T Consensus 71 ~~~~~~---~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~--~~~~i~~~~~ 125 (315)
T PF00580_consen 71 EEQQES---SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGID--PNFEILDEEE 125 (315)
T ss_dssp HCCHCC---TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSH--TTTEEECHHH
T ss_pred cccccc---cccccccccccccchheeehhhhhhhhhhhhhhhhhhcc--ccceeecchh
Confidence 321000 000011111122456788898875 3344433 211111 2355666665
No 353
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.62 E-value=0.021 Score=73.88 Aligned_cols=142 Identities=18% Similarity=0.211 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccC
Q 000324 498 RVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMY 577 (1665)
Q Consensus 498 ~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~ 577 (1665)
..|+.++..++.+ ..++|+|+.|+|||.+..- ++..+....... .+.+|++.+||---|..+.+........+
T Consensus 148 ~~Qk~A~~~al~~-~~~vitGgpGTGKTt~v~~-ll~~l~~~~~~~-----~~~~I~l~APTGkAA~rL~e~~~~~~~~l 220 (586)
T TIGR01447 148 NWQKVAVALALKS-NFSLITGGPGTGKTTTVAR-LLLALVKQSPKQ-----GKLRIALAAPTGKAAARLAESLRKAVKNL 220 (586)
T ss_pred HHHHHHHHHHhhC-CeEEEEcCCCCCHHHHHHH-HHHHHHHhcccc-----CCCcEEEECCcHHHHHHHHHHHHhhhccc
Confidence 7999999998876 5699999999999986532 233332211100 12479999999988888777766543322
Q ss_pred CcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhh---c-CCCccccceeEEEEecccccccCCchHHHHHHHHHHHH
Q 000324 578 DVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRK---S-GDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ 653 (1665)
Q Consensus 578 gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~---~-~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~ 653 (1665)
+.. ........+-..|-.+|-..... . ......-.+++|||||+-++. .+.+..++.
T Consensus 221 ~~~-----------~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd---~~l~~~ll~----- 281 (586)
T TIGR01447 221 AAA-----------EALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD---LPLMAKLLK----- 281 (586)
T ss_pred ccc-----------hhhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC---HHHHHHHHH-----
Confidence 211 00000111113333332111000 0 000112347999999999875 222333332
Q ss_pred HhhccCCeeEEEEc
Q 000324 654 IETTKEHIRLVGLS 667 (1665)
Q Consensus 654 ~~~~~~~~riV~lS 667 (1665)
..+...|+|++.
T Consensus 282 --al~~~~rlIlvG 293 (586)
T TIGR01447 282 --ALPPNTKLILLG 293 (586)
T ss_pred --hcCCCCEEEEEC
Confidence 245678888775
No 354
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=96.61 E-value=0.018 Score=66.74 Aligned_cols=162 Identities=17% Similarity=0.093 Sum_probs=98.7
Q ss_pred CCCCHHHHHHHHHHHc---------CCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHH
Q 000324 494 TQLNRVQSRVYKSALS---------SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l~---------~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~ 564 (1665)
..|+..|-+++--+.+ .+.-.++--.||.||.-...-.|+..+.+. ..|.|++...-.|-.
T Consensus 36 g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G----------r~r~vwvS~s~dL~~ 105 (303)
T PF13872_consen 36 GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG----------RKRAVWVSVSNDLKY 105 (303)
T ss_pred ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC----------CCceEEEECChhhhh
Confidence 3678889888765532 133578888999999877766777777664 336999999999999
Q ss_pred HHHHHHHHhhccCCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhc-CCCccc---------cceeEEEEecccc
Q 000324 565 EVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS-GDRTYT---------QLVKLLIIDEIHL 634 (1665)
Q Consensus 565 q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~-~~~~~l---------~~v~liIiDEaH~ 634 (1665)
...++|+..... .+.+..+..- .......-...|+++|.-.+-.-.++. .....+ ..=.+||+||+|.
T Consensus 106 Da~RDl~DIG~~-~i~v~~l~~~-~~~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~ 183 (303)
T PF13872_consen 106 DAERDLRDIGAD-NIPVHPLNKF-KYGDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHK 183 (303)
T ss_pred HHHHHHHHhCCC-cccceechhh-ccCcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchh
Confidence 999999875432 3444433321 101111124469999988653332211 111111 1125899999998
Q ss_pred cccC-C----chHHHHHHHHHHHHHhhccCCeeEEEEcccCC
Q 000324 635 LHDN-R----GPVLESIVARTVRQIETTKEHIRLVGLSATLP 671 (1665)
Q Consensus 635 l~d~-r----g~~le~iv~r~~~~~~~~~~~~riV~lSATl~ 671 (1665)
..+. . +......+..+. ..-++.|+|.+|||-.
T Consensus 184 akn~~~~~~~~sk~g~avl~LQ----~~LP~ARvvY~SATga 221 (303)
T PF13872_consen 184 AKNLSSGSKKPSKTGIAVLELQ----NRLPNARVVYASATGA 221 (303)
T ss_pred cCCCCccCccccHHHHHHHHHH----HhCCCCcEEEeccccc
Confidence 8652 2 122222232222 2346789999999953
No 355
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.57 E-value=0.017 Score=78.12 Aligned_cols=61 Identities=13% Similarity=0.119 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~ 566 (1665)
.|++-|.+++..++.+++.++|.|+.|+|||++ +-++...+.. .+.+++.++||--.|..+
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~----------~G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA----------AGYEVRGAALSGIAAENL 406 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH----------cCCeEEEecCcHHHHHHH
Confidence 799999999999998777789999999999986 3444444433 245899999998766544
No 356
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.54 E-value=0.02 Score=76.59 Aligned_cols=63 Identities=14% Similarity=0.190 Sum_probs=48.2
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHH
Q 000324 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~ 567 (1665)
..|++-|.+++..++.++..++|.|+.|+|||.+. -++...+... +.++++++||--.|..+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~~~----------g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWEAA----------GYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHHhC----------CCeEEEEeCcHHHHHHHH
Confidence 36899999999999887777899999999999764 3344444332 457999999977666543
No 357
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.45 E-value=0.0068 Score=74.27 Aligned_cols=95 Identities=16% Similarity=0.216 Sum_probs=59.8
Q ss_pred cEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchhccCC
Q 000324 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEK 1438 (1665)
Q Consensus 1359 nvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~l~~ 1438 (1665)
-++|.+..|||||+++.-.+.. +....... +++++++..+|.......+...... ..
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~-l~~~~~~~--~~~~l~~n~~l~~~l~~~l~~~~~~--------------------~~ 59 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKE-LQNSEEGK--KVLYLCGNHPLRNKLREQLAKKYNP--------------------KL 59 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHH-hhccccCC--ceEEEEecchHHHHHHHHHhhhccc--------------------ch
Confidence 4789999999999998554443 32112233 8999999999999888877643200 00
Q ss_pred CcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCC
Q 000324 1439 GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (1665)
Q Consensus 1439 ~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~ 1478 (1665)
....+..|..+..-.. .........++|||||||++..
T Consensus 60 ~~~~~~~~~~~i~~~~--~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 60 KKSDFRKPTSFINNYS--ESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhhhhhhhHHHHhhcc--cccccCCcCCEEEEehhHhhhh
Confidence 1122333333322111 1233457899999999999976
No 358
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.44 E-value=0.0069 Score=74.20 Aligned_cols=95 Identities=20% Similarity=0.291 Sum_probs=59.1
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEECCCcccH
Q 000324 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR 592 (1665)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~ 592 (1665)
.++|.|..|||||++++-.+ ..+... ..+.+++|+++..+|...+...+......
T Consensus 3 v~~I~G~aGTGKTvla~~l~-~~l~~~--------~~~~~~~~l~~n~~l~~~l~~~l~~~~~~---------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLA-KELQNS--------EEGKKVLYLCGNHPLRNKLREQLAKKYNP---------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHHHHH-HHhhcc--------ccCCceEEEEecchHHHHHHHHHhhhccc----------------
Confidence 57899999999999885443 333111 12457899999999999888888664300
Q ss_pred hhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc
Q 000324 593 QQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (1665)
Q Consensus 593 ~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d 637 (1665)
......+..|..+ +............+++|||||||++.+
T Consensus 58 ---~~~~~~~~~~~~~--i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 58 ---KLKKSDFRKPTSF--INNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred ---chhhhhhhhhHHH--HhhcccccccCCcCCEEEEehhHhhhh
Confidence 0111233333332 110001123456789999999999976
No 359
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=96.43 E-value=0.0092 Score=79.57 Aligned_cols=69 Identities=19% Similarity=0.233 Sum_probs=58.2
Q ss_pred CCCCCHHHHHHHHHHH---cCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHH
Q 000324 1339 FKHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll---~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~ 1411 (1665)
...+++.|.+....+. .++..+++.||||+|||++|++|++...... +. +++|.++|+.|.+|..++..
T Consensus 13 ~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~--~~--~viist~t~~lq~q~~~~~~ 84 (654)
T COG1199 13 GFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREE--GK--KVIISTRTKALQEQLLEEDL 84 (654)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHc--CC--cEEEECCCHHHHHHHHHhhc
Confidence 5689999999887654 4566699999999999999999999877662 23 89999999999999887765
No 360
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.43 E-value=0.028 Score=72.95 Aligned_cols=155 Identities=15% Similarity=0.132 Sum_probs=85.9
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHH
Q 000324 1331 LYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDW 1410 (1665)
Q Consensus 1331 ~~~~l~~~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~ 1410 (1665)
.+..+|..-....++|+.|+-..+..+ -.+|.+++|+|||.+..-. +..+.........++++.+||.--+....+..
T Consensus 142 ~l~~lf~~~~~~~d~Qk~Av~~a~~~~-~~vItGgpGTGKTt~v~~l-l~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~ 219 (615)
T PRK10875 142 TLDALFGPVTDEVDWQKVAAAVALTRR-ISVISGGPGTGKTTTVAKL-LAALIQLADGERCRIRLAAPTGKAAARLTESL 219 (615)
T ss_pred HHHHhcCcCCCCCHHHHHHHHHHhcCC-eEEEEeCCCCCHHHHHHHH-HHHHHHhcCCCCcEEEEECCcHHHHHHHHHHH
Confidence 344555411123589999999888754 4899999999999875322 22222211112237889999988888777766
Q ss_pred HHHhcCCCCcEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHh---hh-ccccCCCccEEEeecccccCCCCchhHHH
Q 000324 1411 EIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRR---WK-QRKYVQQVSLFIIDELHLIGGQGGPVLEV 1486 (1665)
Q Consensus 1411 ~~~~~~~~~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~---~~-~~~~l~~v~llViDEaH~l~~~~g~~~e~ 1486 (1665)
....... +. .. +.+ ..-..-..|-.++...... +. ...+.-..+++||||+-++.
T Consensus 220 ~~~~~~~-~~-----~~----~~~--~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd--------- 278 (615)
T PRK10875 220 GKALRQL-PL-----TD----EQK--KRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD--------- 278 (615)
T ss_pred Hhhhhcc-cc-----ch----hhh--hcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc---------
Confidence 5333211 10 00 000 0001112333333221110 00 11223457999999999984
Q ss_pred HHHHHHHHHhhcCCCCeEEEEcc
Q 000324 1487 IVSRMRYIASQVENKIRIVALST 1509 (1665)
Q Consensus 1487 ~~srl~~i~~~~~~~~riI~lSA 1509 (1665)
+.-|..+...+++..|+|++.=
T Consensus 279 -~~lm~~ll~al~~~~rlIlvGD 300 (615)
T PRK10875 279 -LPMMARLIDALPPHARVIFLGD 300 (615)
T ss_pred -HHHHHHHHHhcccCCEEEEecc
Confidence 2334445556688899999873
No 361
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.38 E-value=0.0099 Score=61.47 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=15.9
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHH
Q 000324 510 SADNILLCAPTGAGKTNVAVLTILQ 534 (1665)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l~il~ 534 (1665)
++..++|+||+|+|||.++...+-.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHH
Confidence 3456899999999999877554443
No 362
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=96.23 E-value=0.2 Score=66.91 Aligned_cols=230 Identities=12% Similarity=0.140 Sum_probs=0.0
Q ss_pred HhhhccccEEEeChhhH--HHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEccc
Q 000324 592 RQQIEETQIIVTTPEKW--DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (1665)
Q Consensus 592 ~~~~~~~~IiV~TPekl--d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSAT 669 (1665)
.+......|+++||.-+ |.|+.+.. +..|..|||||||.+. |...+..+.++.+ +..+..-|.||||.
T Consensus 2 ~~ly~~ggi~~~T~rIl~~DlL~~ri~----~~~itgiiv~~Ahr~~---~~~~eaFI~rlyr---~~n~~gfIkafSds 71 (814)
T TIGR00596 2 EKVYLEGGIFSITSRILVVDLLTGIIP----PELITGILVLRADRII---ESSQEAFILRLYR---QKNKTGFIKAFSDN 71 (814)
T ss_pred hhHhhcCCEEEEechhhHhHHhcCCCC----HHHccEEEEeeccccc---ccccHHHHHHHHH---HhCCCcceEEecCC
Q ss_pred CCCh----HHHHHHHhccccCceEEecC-------CCccccceEEEEeeecCchhHHHHHHHHHH---------------
Q 000324 670 LPNY----EDVALFLRVNLEKGLFYFDN-------SYRPVPLSQQYIGIQVKKPLQRFQLMNDLC--------------- 723 (1665)
Q Consensus 670 l~n~----~dv~~~l~~~~~~~~~~f~~-------~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~--------------- 723 (1665)
.... ..+.+-+..=....++.+.. ...+.+.....+.++........+.....|
T Consensus 72 P~~~~~g~~~l~~vmk~L~i~~v~l~prf~~~V~~~l~~~~~~V~ei~V~l~~~m~~Iq~~l~~~l~~~l~eLkr~n~~l 151 (814)
T TIGR00596 72 PEAFTMGFSPLETKMRNLFLRHVYLWPRFHVEVASSLEKHKAEVIELHVSLTDSMSQIQSAILECLNKCIAELKRKNPEL 151 (814)
T ss_pred CcccccchHHHHHHHHHhCcCeEEEeCCCchHHHHHhccCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q ss_pred -----------------------------------------------------------HHHHHHH--------------
Q 000324 724 -----------------------------------------------------------YEKVVAV-------------- 730 (1665)
Q Consensus 724 -----------------------------------------------------------~~~i~~~-------------- 730 (1665)
|..+...
T Consensus 152 d~~dl~~en~l~~~F~~~i~~qL~~~wh~~~~~tkqlv~Dl~~Lr~ll~~L~t~D~vtF~~yL~~~l~~~~~~~~sk~~~ 231 (814)
T TIGR00596 152 DMEDWNLENALTKSFDRIIRRQLDPNWHRLSYKTKQLVGDLKILRHLLQSLVTYDAVSFLGLLDTSLRANKPAVSRKYSE 231 (814)
T ss_pred CHHHhHHhhhhhhhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccccccccC
Q ss_pred -------------------------------------------------------------hCCCeEEEEecChhHHHHH
Q 000324 731 -------------------------------------------------------------AGKHQVLIFVHSRKETAKT 749 (1665)
Q Consensus 731 -------------------------------------------------------------~~~~~vLVFv~sr~~~~~~ 749 (1665)
.+.+++||||+.++.|..+
T Consensus 232 S~Wl~~daa~~lf~~ak~Rvy~~~~~~~~~~e~~lEe~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL 311 (814)
T TIGR00596 232 SPWLLLDAAQLIFSYARQRVYYEGEGPNMKNEPVLEENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQL 311 (814)
T ss_pred CcchhhHHHHHHHHHHHHHHhccccccccccccCcccCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHH
Q ss_pred HHHHHH-----------------------------------------------------------HhhhccccccccccC
Q 000324 750 ARAIRD-----------------------------------------------------------TALENDTLGRFLKED 770 (1665)
Q Consensus 750 a~~L~~-----------------------------------------------------------~~~~~~~l~~~~~~~ 770 (1665)
.+.|.. ..
T Consensus 312 ~~~L~~~~~~~~~~~fm~~~l~~y~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~krrr------------- 378 (814)
T TIGR00596 312 RDYLTTSNKKRGSRAFLLNKLRWYRKWREETSKLAKEVQSQDTFPENASSNVNKTFRKEQVPTKRRR------------- 378 (814)
T ss_pred HHHHHhccccccHHHHHHHHHHHHHhhhhhhhhhhHhhhhccccccccccccccccccccccccccc-------------
Q ss_pred chhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCC---------eE-----------------
Q 000324 771 SVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQ---------VL----------------- 824 (1665)
Q Consensus 771 ~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~---------VL----------------- 824 (1665)
+.||++.. ...|+.|... ++
T Consensus 379 ------------------------------~rG~s~~~----~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 424 (814)
T TIGR00596 379 ------------------------------VRGGSEVA----VEKLRNANTNDMQHFEEDHELEEEGDDLEDGPAQEINA 424 (814)
T ss_pred ------------------------------cccchhHH----Hhhhcccccccccccchhhhhhhhhhhhcccccccccc
Q ss_pred ------EeccccccccCCCc----------------------e----------EEEEecccccCCCCCCcccCCHHHHHh
Q 000324 825 ------VSTATLAWGVNLPA----------------------H----------TVIIKGTQIYNPEKGAWTELSPLDIMQ 866 (1665)
Q Consensus 825 ------VaT~tla~GVdlP~----------------------v----------~vVI~~t~~yd~~~g~~~~~s~~~~~Q 866 (1665)
|+|+....|+|+|. + ++||. |+|.- .++-
T Consensus 425 ~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~e~~P~~VIm----YEP~~---------sfIR 491 (814)
T TIGR00596 425 ANDSKIFEIIDEENDIDIYSGAEFDNLPQHITHFLWGERDEYVLRCSLEELMPRYVIM----YEPDI---------SFIR 491 (814)
T ss_pred ccccccccccccccccccchhhccccccceeeeecccccchhhHHHHHhhhCCCEEEE----ECCCh---------HHHH
Q ss_pred hhc--ccCCCCCCCceEEEEEeCCCcHHH
Q 000324 867 MLG--RAGRPQYDSYGEGIIITGHSELRY 893 (1665)
Q Consensus 867 r~G--RAGR~g~d~~G~~iil~~~~~~~~ 893 (1665)
++= ||||+| ..|.+|+++..+..+.
T Consensus 492 ~IEvyra~r~~--r~~rVyfL~y~~S~EE 518 (814)
T TIGR00596 492 QLEVYKASRPL--RPLRVYFLYYGGSIEE 518 (814)
T ss_pred HHHHHHccCCC--CCcEEEEEEECCcHHH
No 363
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.23 E-value=0.028 Score=74.92 Aligned_cols=64 Identities=17% Similarity=0.229 Sum_probs=47.0
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHH
Q 000324 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~ 567 (1665)
..+++-|.+++..+..+ ..++|.|+.|+|||.+. -+++..+.... ....++.++||-..|..+.
T Consensus 322 ~~l~~~Q~~Ai~~~~~~-~~~iitGgpGTGKTt~l-~~i~~~~~~~~--------~~~~v~l~ApTg~AA~~L~ 385 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQH-KVVILTGGPGTGKTTIT-RAIIELAEELG--------GLLPVGLAAPTGRAAKRLG 385 (720)
T ss_pred CCCCHHHHHHHHHHHhC-CeEEEECCCCCCHHHHH-HHHHHHHHHcC--------CCceEEEEeCchHHHHHHH
Confidence 37899999999998654 57999999999999865 34444443321 0146888999988876543
No 364
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.12 E-value=0.023 Score=72.92 Aligned_cols=79 Identities=25% Similarity=0.257 Sum_probs=51.2
Q ss_pred CCCHHHHHHHHHHHc---CCCcEEEEccCCCchHHHHHHHHHHHHHhcC--C--------C-----------CCC----C
Q 000324 495 QLNRVQSRVYKSALS---SADNILLCAPTGAGKTNVAVLTILQQLALNR--N--------D-----------DGS----F 546 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~---~~~nvlv~APTGsGKT~~a~l~il~~l~~~~--~--------~-----------~g~----~ 546 (1665)
++++.|...+..++. ...|.++-.|||+|||+..+-..|.-..... . . .|. .
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 568889877766543 4557899999999999865443332221111 0 0 000 0
Q ss_pred C------CCCcEEEEEcccHHHHHHHHHHHHHh
Q 000324 547 N------HSNYKIVYVAPMKALVAEVVGNLSNR 573 (1665)
Q Consensus 547 ~------~~~~kil~iaP~raLa~q~~~~~~~~ 573 (1665)
. ...++|.|-.-|-+-..|+++++++.
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT 133 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRT 133 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhc
Confidence 0 13578888888888888999888764
No 365
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.07 E-value=0.023 Score=59.26 Aligned_cols=20 Identities=45% Similarity=0.735 Sum_probs=16.5
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 000324 511 ADNILLCAPTGAGKTNVAVL 530 (1665)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l 530 (1665)
...+++.||+|+|||..+..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~ 38 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARA 38 (151)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 56799999999999975543
No 366
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.04 E-value=0.11 Score=63.78 Aligned_cols=132 Identities=14% Similarity=0.168 Sum_probs=73.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEECCCccc
Q 000324 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLT 591 (1665)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~ 591 (1665)
..++++||||+|||+++.-.+.+........ | ....++.+=+.|.-+.++...+.+.+ |+.+.
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~-g----~~V~lit~Dt~R~aa~eQL~~~a~~l---gvpv~--------- 237 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDK-S----LNIKIITIDNYRIGAKKQIQTYGDIM---GIPVK--------- 237 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccC-C----CeEEEEeccCccHHHHHHHHHHhhcC---CcceE---------
Confidence 4689999999999987644333222211000 1 12334455566777777766665543 44332
Q ss_pred HhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCC-eeEEEEcccC
Q 000324 592 RQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEH-IRLVGLSATL 670 (1665)
Q Consensus 592 ~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~-~riV~lSATl 670 (1665)
.+-++..+.....+ +...++||||++...+.+ .. -+.++...+.....+ -.++.+|||.
T Consensus 238 ---------~~~~~~~l~~~L~~------~~~~DlVLIDTaGr~~~~----~~-~l~el~~~l~~~~~~~e~~LVlsat~ 297 (388)
T PRK12723 238 ---------AIESFKDLKEEITQ------SKDFDLVLVDTIGKSPKD----FM-KLAEMKELLNACGRDAEFHLAVSSTT 297 (388)
T ss_pred ---------eeCcHHHHHHHHHH------hCCCCEEEEcCCCCCccC----HH-HHHHHHHHHHhcCCCCeEEEEEcCCC
Confidence 12234444332222 245799999999987531 11 144444444433333 4678899997
Q ss_pred CChHHHHHHHh
Q 000324 671 PNYEDVALFLR 681 (1665)
Q Consensus 671 ~n~~dv~~~l~ 681 (1665)
. ..++.+.+.
T Consensus 298 ~-~~~~~~~~~ 307 (388)
T PRK12723 298 K-TSDVKEIFH 307 (388)
T ss_pred C-HHHHHHHHH
Confidence 5 566665554
No 367
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.00 E-value=0.073 Score=69.26 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=25.6
Q ss_pred cE-EEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcc
Q 000324 513 NI-LLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1665)
Q Consensus 513 nv-lv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (1665)
++ +|+||||+|||.+.-.. ++.+....... ....+.++||=-
T Consensus 782 nvLYIyG~PGTGKTATVK~V-LrELqeeaeqk---~lp~f~vVYINC 824 (1164)
T PTZ00112 782 QILYISGMPGTGKTATVYSV-IQLLQHKTKQK---LLPSFNVFEING 824 (1164)
T ss_pred ceEEEECCCCCCHHHHHHHH-HHHHHHHHhhc---cCCCceEEEEeC
Confidence 45 59999999999987553 45553321111 123467888844
No 368
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.99 E-value=0.11 Score=64.05 Aligned_cols=145 Identities=22% Similarity=0.250 Sum_probs=75.1
Q ss_pred EccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc-cCCcEEEEEECCCc------
Q 000324 517 CAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVRELSGDQT------ 589 (1665)
Q Consensus 517 ~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~-~~gi~V~~ltGd~~------ 589 (1665)
.+.||||||++..-.||....++. ..-++.+..-....-....|..-.. .+=.+-....+|..
T Consensus 3 ~matgsgkt~~ma~lil~~y~kgy----------r~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkv 72 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKGY----------RNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKV 72 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhch----------hhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeee
Confidence 468999999988888888776542 2355656555554444444432111 00000011112211
Q ss_pred --ccHhhhccccEEEeChhhH-HHHHhhcCC---CccccceeE-EEEecccccccC-C---------chHHHHHHHHHHH
Q 000324 590 --LTRQQIEETQIIVTTPEKW-DIITRKSGD---RTYTQLVKL-LIIDEIHLLHDN-R---------GPVLESIVARTVR 652 (1665)
Q Consensus 590 --~~~~~~~~~~IiV~TPekl-d~l~r~~~~---~~~l~~v~l-iIiDEaH~l~d~-r---------g~~le~iv~r~~~ 652 (1665)
++. ......|.++|...+ ..++|..-. ...+.+.++ ++-||+|+|... . -..+++.|....
T Consensus 73 n~fse-hnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~- 150 (812)
T COG3421 73 NNFSE-HNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLAL- 150 (812)
T ss_pred cccCc-cCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHH-
Confidence 111 223567999999986 334443321 223444455 466999999541 1 122344333222
Q ss_pred HHhhccCCeeEEEEcccCCChHHH
Q 000324 653 QIETTKEHIRLVGLSATLPNYEDV 676 (1665)
Q Consensus 653 ~~~~~~~~~riV~lSATl~n~~dv 676 (1665)
+ ..++--++.+|||+|.-.+|
T Consensus 151 --~-~nkd~~~lef~at~~k~k~v 171 (812)
T COG3421 151 --E-QNKDNLLLEFSATIPKEKSV 171 (812)
T ss_pred --h-cCCCceeehhhhcCCccccH
Confidence 2 23445566789999853344
No 369
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.93 E-value=0.042 Score=73.22 Aligned_cols=62 Identities=23% Similarity=0.212 Sum_probs=46.2
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHH
Q 000324 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q 1405 (1665)
..+++-|.+|+..+... ..+++.++.|+|||.+. -+++..+....... ++++++||---+..
T Consensus 322 ~~l~~~Q~~Ai~~~~~~-~~~iitGgpGTGKTt~l-~~i~~~~~~~~~~~--~v~l~ApTg~AA~~ 383 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQH-KVVILTGGPGTGKTTIT-RAIIELAEELGGLL--PVGLAAPTGRAAKR 383 (720)
T ss_pred CCCCHHHHHHHHHHHhC-CeEEEECCCCCCHHHHH-HHHHHHHHHcCCCc--eEEEEeCchHHHHH
Confidence 47899999999999764 46899999999999875 34555555421112 78889999777764
No 370
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=95.89 E-value=0.029 Score=71.78 Aligned_cols=197 Identities=17% Similarity=0.205 Sum_probs=102.5
Q ss_pred CCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcHHHHHHhh
Q 000324 819 GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLM 898 (1665)
Q Consensus 819 g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll 898 (1665)
...+.|++-.+|-.|-|=|+|-.|.+ ..+.. |..+=+|-+||.-|---+..|.-+.= .-+...++.++
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIck----L~~S~------SeiSK~QeVGRGLRLaVNe~G~RV~~--~~~~~n~L~vl 549 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICK----LRSSG------SEISKLQEVGRGLRLAVNENGERVTK--DFDFPNELTVL 549 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEE----ecCCC------cchHHHHHhccceeeeeccccceecc--cccccceEEEE
Confidence 45899999999999999999999998 55444 77888999999999766666655431 00111111111
Q ss_pred cCCCccccchhHhhHHHHHHHHHhcccc--ChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHHHHHHHH
Q 000324 899 NQQLPIESQFVSKLADQLNAEIVLGTVQ--NAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAA 976 (1665)
Q Consensus 899 ~~~~piES~l~~~l~d~lnaeI~~g~i~--~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~ 976 (1665)
-.. .|-.|.+.|.+-++.+-..+... ...+..... .+ .++.+.+. .+...-.
T Consensus 550 v~~--sek~Fv~~LqkEI~~~s~i~~~~~~~~e~~~~~i----------~~-e~~~v~~e-------------~~~~~~f 603 (985)
T COG3587 550 VNE--SEKDFVKALQKEINDESFIKQGFAKDEEELSKLI----------LK-ERGKVLPE-------------TLEKLLF 603 (985)
T ss_pred ecc--cHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHH----------hh-ccccccHH-------------HHHHHHh
Confidence 110 13344555555555543332221 111221111 11 11222211 0111112
Q ss_pred HHHhHcCCcccccCCCccccChHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHhcCCccCC--CCcCChhHHHHHHH
Q 000324 977 TILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFK--YVTVRQDEKMELAK 1054 (1665)
Q Consensus 977 ~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~~s~s~Ef~--~i~~R~~E~~~l~~ 1054 (1665)
..|.+...+..++..-.=.-+.++..-+.+|-.+..+.-+.+. .+. .-..+..+.+=+ .|.+|.+-.++++.
T Consensus 604 ~dl~~~d~l~~n~n~f~~~~~~~d~lk~e~~~~f~~~~~~~~~---~l~---~~~~I~Na~~~k~~~i~~r~~n~kefk~ 677 (985)
T COG3587 604 GDLIKDDYLDLNENEFAEKEPELDKLKDELYEAFEKIKDLIKD---RLI---GADRIRNAKERKKEKIKIRKENFKEFKA 677 (985)
T ss_pred hhhcccccccccchhhccccchhhhcCHHHHHHhHHHHHHHHh---hhh---hhhhhccCCcccccceehhhhhHHHHHH
Confidence 3333334332221100112356788888888877777666542 111 112445555544 45667777778887
Q ss_pred HhccC
Q 000324 1055 LLDRV 1059 (1665)
Q Consensus 1055 l~~~~ 1059 (1665)
|.+.+
T Consensus 678 LW~~i 682 (985)
T COG3587 678 LWEKI 682 (985)
T ss_pred HHHHh
Confidence 77653
No 371
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.84 E-value=0.078 Score=62.22 Aligned_cols=64 Identities=25% Similarity=0.272 Sum_probs=49.3
Q ss_pred CCCCCCHHHHHHHHHHHcCC-CcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHH
Q 000324 492 GMTQLNRVQSRVYKSALSSA-DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563 (1665)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~-~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa 563 (1665)
|++-.|..|.-++..++..+ +=|.+.++.|||||+.|+-+.+.+....+. ..|+|+.=|+..+-
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~--------y~KiiVtRp~vpvG 289 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR--------YRKIIVTRPTVPVG 289 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh--------hceEEEecCCcCcc
Confidence 78888999999999877653 345678999999999999888877665422 33788888876654
No 372
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=95.82 E-value=0.016 Score=69.68 Aligned_cols=71 Identities=21% Similarity=0.134 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcC
Q 000324 1342 FNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (1665)
Q Consensus 1342 ~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~ 1416 (1665)
+|+-|.+++.. ...+++|.|+.|||||.+...-++..+.... -..-++|++++|+..+.++..++...++.
T Consensus 1 l~~eQ~~~i~~---~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-~~~~~Il~lTft~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 1 LTDEQRRIIRS---TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-VPPERILVLTFTNAAAQEMRERIRELLEE 71 (315)
T ss_dssp S-HHHHHHHHS----SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-STGGGEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC---CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-CChHHheecccCHHHHHHHHHHHHHhcCc
Confidence 57889999987 3557999999999999998887777776641 11228999999999999999999876653
No 373
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.80 E-value=0.099 Score=58.28 Aligned_cols=130 Identities=19% Similarity=0.164 Sum_probs=70.4
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEECCCcccH
Q 000324 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR 592 (1665)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~ 592 (1665)
.++++||||+|||+...--..+...+. .+...+.+=..|.=|.++.+.+.+.+ |+.+....-..
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~---------~~v~lis~D~~R~ga~eQL~~~a~~l---~vp~~~~~~~~---- 66 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKG---------KKVALISADTYRIGAVEQLKTYAEIL---GVPFYVARTES---- 66 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT-----------EEEEEESTSSTHHHHHHHHHHHHH---TEEEEESSTTS----
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhcc---------ccceeecCCCCCccHHHHHHHHHHHh---ccccchhhcch----
Confidence 478899999999886654444433321 12334445567888888888887765 44433211000
Q ss_pred hhhccccEEEeChhh-HHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEcccCC
Q 000324 593 QQIEETQIIVTTPEK-WDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671 (1665)
Q Consensus 593 ~~~~~~~IiV~TPek-ld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~ 671 (1665)
.|.. +....++. ..+++++|+||-+-+. +.-...+..+........+.--++.+|||..
T Consensus 67 -----------~~~~~~~~~l~~~----~~~~~D~vlIDT~Gr~-----~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~ 126 (196)
T PF00448_consen 67 -----------DPAEIAREALEKF----RKKGYDLVLIDTAGRS-----PRDEELLEELKKLLEALNPDEVHLVLSATMG 126 (196)
T ss_dssp -----------CHHHHHHHHHHHH----HHTTSSEEEEEE-SSS-----STHHHHHHHHHHHHHHHSSSEEEEEEEGGGG
T ss_pred -----------hhHHHHHHHHHHH----hhcCCCEEEEecCCcc-----hhhHHHHHHHHHHhhhcCCccceEEEecccC
Confidence 1211 11111111 1234689999988643 3334444555444444556667788999986
Q ss_pred ChHHHHHH
Q 000324 672 NYEDVALF 679 (1665)
Q Consensus 672 n~~dv~~~ 679 (1665)
. +++...
T Consensus 127 ~-~~~~~~ 133 (196)
T PF00448_consen 127 Q-EDLEQA 133 (196)
T ss_dssp G-HHHHHH
T ss_pred h-HHHHHH
Confidence 4 444433
No 374
>PRK12377 putative replication protein; Provisional
Probab=95.79 E-value=0.073 Score=61.39 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=31.1
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHH
Q 000324 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (1665)
Q Consensus 1356 ~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~ 1409 (1665)
+..++++.+|+|+|||-.+. +|...+.. .+ ..++.++..+|..++...
T Consensus 100 ~~~~l~l~G~~GtGKThLa~-AIa~~l~~---~g--~~v~~i~~~~l~~~l~~~ 147 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAA-AIGNRLLA---KG--RSVIVVTVPDVMSRLHES 147 (248)
T ss_pred cCCeEEEECCCCCCHHHHHH-HHHHHHHH---cC--CCeEEEEHHHHHHHHHHH
Confidence 34579999999999998874 44445544 12 334445666777765543
No 375
>PRK12377 putative replication protein; Provisional
Probab=95.72 E-value=0.062 Score=61.96 Aligned_cols=47 Identities=15% Similarity=0.322 Sum_probs=30.0
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000324 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (1665)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (1665)
..+++++||+|+|||..+ .+|.+.+... +..++| .+..+|..++...
T Consensus 101 ~~~l~l~G~~GtGKThLa-~AIa~~l~~~----------g~~v~~-i~~~~l~~~l~~~ 147 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLA-AAIGNRLLAK----------GRSVIV-VTVPDVMSRLHES 147 (248)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHHHc----------CCCeEE-EEHHHHHHHHHHH
Confidence 457999999999999876 3455555432 223444 4555666665443
No 376
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.72 E-value=0.024 Score=69.67 Aligned_cols=109 Identities=23% Similarity=0.366 Sum_probs=65.0
Q ss_pred CCCHHHHHHHHHHH-----cCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHH--H
Q 000324 495 QLNRVQSRVYKSAL-----SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV--V 567 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l-----~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~--~ 567 (1665)
+||+-|++++..++ ....+++|.||-|+|||.+.- ++...+.. .+..++++|||-..|..+ -
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~-~i~~~~~~----------~~~~~~~~a~tg~AA~~i~~G 69 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIK-AIIDYLRS----------RGKKVLVTAPTGIAAFNIPGG 69 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHH-HHHHHhcc----------ccceEEEecchHHHHHhccCC
Confidence 47899999988773 345689999999999997552 22333221 244799999998877665 2
Q ss_pred HHHHHhhccCCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc
Q 000324 568 GNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (1665)
Q Consensus 568 ~~~~~~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d 637 (1665)
..+...| ++.+.. .. ... +.+++ .......+..+++|||||+=+++.
T Consensus 70 ~T~hs~f---~i~~~~----~~-------~~~---~~~~~------~~~~~~~l~~~~~lIiDEism~~~ 116 (364)
T PF05970_consen 70 RTIHSFF---GIPINN----NE-------KSQ---CKISK------NSRLRERLRKADVLIIDEISMVSA 116 (364)
T ss_pred cchHHhc---Cccccc----cc-------ccc---ccccc------cchhhhhhhhheeeecccccchhH
Confidence 2333322 222110 00 000 12221 111223567789999999998853
No 377
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=95.71 E-value=0.097 Score=71.09 Aligned_cols=125 Identities=17% Similarity=0.188 Sum_probs=78.2
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000324 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~ 1419 (1665)
..+++-|.+|+..++.+++-++|.++.|+|||.+ +-++...+.. .+. +++.++||---+.... ...|
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~--~G~--~V~~~ApTGkAA~~L~--------e~tG 411 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA--AGY--EVRGAALSGIAAENLE--------GGSG 411 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH--cCC--eEEEecCcHHHHHHHh--------hccC
Confidence 4699999999999998777789999999999987 3445555554 233 8999999976554322 1112
Q ss_pred cEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhh-ccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhc
Q 000324 1420 MRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWK-QRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV 1498 (1665)
Q Consensus 1420 i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~-~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~ 1498 (1665)
+.. .|..+| ...|. ....+...++|||||+-++... .+..++. . ..
T Consensus 412 i~a---------------------~TI~sl---l~~~~~~~~~l~~~~vlIVDEASMv~~~---~m~~LL~----~--a~ 458 (988)
T PRK13889 412 IAS---------------------RTIASL---EHGWGQGRDLLTSRDVLVIDEAGMVGTR---QLERVLS----H--AA 458 (988)
T ss_pred cch---------------------hhHHHH---HhhhcccccccccCcEEEEECcccCCHH---HHHHHHH----h--hh
Confidence 211 132222 22332 2334667899999999998632 1222221 1 11
Q ss_pred CCCCeEEEEccc
Q 000324 1499 ENKIRIVALSTS 1510 (1665)
Q Consensus 1499 ~~~~riI~lSAT 1510 (1665)
....++|++.=+
T Consensus 459 ~~garvVLVGD~ 470 (988)
T PRK13889 459 DAGAKVVLVGDP 470 (988)
T ss_pred hCCCEEEEECCH
Confidence 456788887643
No 378
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=95.71 E-value=0.097 Score=71.45 Aligned_cols=62 Identities=18% Similarity=0.185 Sum_probs=47.6
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000324 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~ 566 (1665)
..|++-|.+++..+..++.-++|.|+.|+|||++.- ++...+.. .+.+++-++||-.-|..+
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~-~~~~~~e~----------~G~~V~g~ApTgkAA~~L 441 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMK-AAREAWEA----------AGYRVVGGALAGKAAEGL 441 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHH-HHHHHHHH----------cCCeEEEEcCcHHHHHHH
Confidence 479999999999887667778999999999997543 34444433 256899999997777655
No 379
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=95.66 E-value=0.018 Score=71.23 Aligned_cols=67 Identities=21% Similarity=0.258 Sum_probs=58.9
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHH
Q 000324 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~ 1411 (1665)
..+++-|++|+....+..+-.++.+|+|+|||.+-..-|.+.+.+ +. ++|+.+||.+-++-+.+++.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~---~k--~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ---KK--RVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc---CC--eEEEEcCchHHHHHHHHHhc
Confidence 578999999999999887778999999999999988888888777 33 99999999999999988644
No 380
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.64 E-value=0.095 Score=70.22 Aligned_cols=101 Identities=18% Similarity=0.236 Sum_probs=66.4
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000324 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~ 1419 (1665)
..+++-|.+|+..++.++.-++|.+++|+|||.+.- ++...+.. .+. ++++++||---+....+ ..|
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~-~i~~~~~~--~g~--~V~~~ApTg~Aa~~L~~--------~~g 417 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLK-AAREAWEA--AGY--RVIGAALSGKAAEGLQA--------ESG 417 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHH-HHHHHHHh--CCC--eEEEEeCcHHHHHHHHh--------ccC
Confidence 468999999999998876668999999999998753 34444444 233 89999999665544321 112
Q ss_pred cEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhh-ccccCCCccEEEeecccccC
Q 000324 1420 MRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWK-QRKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1420 i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~-~~~~l~~v~llViDEaH~l~ 1477 (1665)
+.. .|-.+|. ..|. ....+...++|||||+-++.
T Consensus 418 ~~a---------------------~Ti~~~~---~~~~~~~~~~~~~~llIvDEasMv~ 452 (744)
T TIGR02768 418 IES---------------------RTLASLE---YAWANGRDLLSDKDVLVIDEAGMVG 452 (744)
T ss_pred Cce---------------------eeHHHHH---hhhccCcccCCCCcEEEEECcccCC
Confidence 211 1322321 1121 22346688999999999996
No 381
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.61 E-value=0.048 Score=63.91 Aligned_cols=64 Identities=22% Similarity=0.283 Sum_probs=49.1
Q ss_pred CCCCCCHHHHHHHHHHHcCC-CcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHH
Q 000324 1338 GFKHFNPIQTQVFTVLYNTD-DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403 (1665)
Q Consensus 1338 ~f~~~~~iQ~qa~~~ll~~~-dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa 1403 (1665)
|+.--|-.|.-|+..++..+ +=|.+.++.|||||+.|+.|.+......+.-. ++|+--|+..+.
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~--KiiVtRp~vpvG 289 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYR--KIIVTRPTVPVG 289 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhc--eEEEecCCcCcc
Confidence 46677888999999998744 45678999999999999988887766644333 788877776554
No 382
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.59 E-value=0.35 Score=58.57 Aligned_cols=143 Identities=17% Similarity=0.239 Sum_probs=81.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEECCCcc
Q 000324 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590 (1665)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~ 590 (1665)
+..+.+.||||.|||+...--+.+..+.... .+..+|=+=..|.=|.++...+.+.+ |+.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~-------~kVaiITtDtYRIGA~EQLk~Ya~im---~vp~--------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKK-------KKVAIITTDTYRIGAVEQLKTYADIM---GVPL--------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccC-------cceEEEEeccchhhHHHHHHHHHHHh---CCce---------
Confidence 6779999999999987543333333322211 12233434456777788777776654 3333
Q ss_pred cHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEcccC
Q 000324 591 TRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670 (1665)
Q Consensus 591 ~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl 670 (1665)
.+|-+|.-|+.-.. .+++.++|.||=+-+ ++.=...++.+........+--..+.||||.
T Consensus 264 ---------~vv~~~~el~~ai~------~l~~~d~ILVDTaGr-----s~~D~~~i~el~~~~~~~~~i~~~Lvlsat~ 323 (407)
T COG1419 264 ---------EVVYSPKELAEAIE------ALRDCDVILVDTAGR-----SQYDKEKIEELKELIDVSHSIEVYLVLSATT 323 (407)
T ss_pred ---------EEecCHHHHHHHHH------HhhcCCEEEEeCCCC-----CccCHHHHHHHHHHHhccccceEEEEEecCc
Confidence 34555654532221 345568888887743 3333334444444444444445667899995
Q ss_pred CChHHHHHHHhccccCceEEecCCCccccceEEEE
Q 000324 671 PNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI 705 (1665)
Q Consensus 671 ~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~ 705 (1665)
.++|+..-+. .|+.+|+...++
T Consensus 324 -K~~dlkei~~------------~f~~~~i~~~I~ 345 (407)
T COG1419 324 -KYEDLKEIIK------------QFSLFPIDGLIF 345 (407)
T ss_pred -chHHHHHHHH------------HhccCCcceeEE
Confidence 6677766654 345666665544
No 383
>PRK06526 transposase; Provisional
Probab=95.43 E-value=0.12 Score=60.00 Aligned_cols=24 Identities=29% Similarity=0.635 Sum_probs=19.4
Q ss_pred HcCCCcEEEEccCCCchHHHHHHH
Q 000324 508 LSSADNILLCAPTGAGKTNVAVLT 531 (1665)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a~l~ 531 (1665)
+....|++++||+|+|||..+.-.
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al 118 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGL 118 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHH
Confidence 345679999999999999877543
No 384
>PRK06526 transposase; Provisional
Probab=95.42 E-value=0.092 Score=60.99 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=20.1
Q ss_pred cCCCcEEEECCCCChHHHHHHHHHH
Q 000324 1355 NTDDNVLVAAPTGSGKTICSEFAIL 1379 (1665)
Q Consensus 1355 ~~~dnvlv~ApTGSGKTl~a~l~il 1379 (1665)
..+.|+++++|+|+|||..+.....
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~ 120 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGI 120 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHH
Confidence 4567899999999999998755443
No 385
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.39 E-value=0.28 Score=62.74 Aligned_cols=157 Identities=15% Similarity=0.184 Sum_probs=88.6
Q ss_pred CCHHHHHHHHHHHc--CCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000324 496 LNRVQSRVYKSALS--SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (1665)
Q Consensus 496 l~~iQ~~~i~~~l~--~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (1665)
++|.=.+-++.+++ ...-.++.+|=|.|||.+..+.+...+.. .+.+|+|++|...-++++++++...
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f----------~Gi~IlvTAH~~~ts~evF~rv~~~ 239 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF----------LEIDIVVQAQRKTMCLTLYNRVETV 239 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh----------cCCeEEEECCChhhHHHHHHHHHHH
Confidence 34444444444432 23346778999999999887776654432 1458999999999999999998888
Q ss_pred hccCC--------cEEEEEECCCc-c--cH--hhh-ccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCC
Q 000324 574 LQMYD--------VKVRELSGDQT-L--TR--QQI-EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNR 639 (1665)
Q Consensus 574 ~~~~g--------i~V~~ltGd~~-~--~~--~~~-~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~r 639 (1665)
+..+| -.+....|+.. . .. ... ..+.|.+++-. . +...-..++++|+|||+.+.+
T Consensus 240 le~lg~~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars--------~-~s~RG~~~DLLIVDEAAfI~~-- 308 (752)
T PHA03333 240 VHAYQHKPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS--------P-NAARGQNPDLVIVDEAAFVNP-- 308 (752)
T ss_pred HHHhccccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc--------C-CCcCCCCCCEEEEECcccCCH--
Confidence 76433 12222333221 0 00 000 11233332211 1 111113468999999999864
Q ss_pred chHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHh
Q 000324 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLR 681 (1665)
Q Consensus 640 g~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~ 681 (1665)
+.++.++--+ . ..+.+++.+|.+-. ....-.+|.
T Consensus 309 -~~l~aIlP~l----~--~~~~k~IiISS~~~-~~s~tS~L~ 342 (752)
T PHA03333 309 -GALLSVLPLM----A--VKGTKQIHISSPVD-ADSWISRVG 342 (752)
T ss_pred -HHHHHHHHHH----c--cCCCceEEEeCCCC-cchHHHHhh
Confidence 4455544432 2 24677888888742 333344443
No 386
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.37 E-value=0.22 Score=61.16 Aligned_cols=130 Identities=15% Similarity=0.177 Sum_probs=71.9
Q ss_pred CcEEEECCCCChHHHHHHHHHHHHHHhh-cCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchhcc
Q 000324 1358 DNVLVAAPTGSGKTICSEFAILRNHQKA-SETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLL 1436 (1665)
Q Consensus 1358 dnvlv~ApTGSGKTl~a~l~il~~l~~~-~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~l 1436 (1665)
..+++++|||+|||.+..--+.+..... ..+..+..+-+=+.|.-+..+...|. ..+|+.+..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a----~~lgvpv~~------------ 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYG----DIMGIPVKA------------ 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHh----hcCCcceEe------------
Confidence 4688999999999988643332222211 12232233334455555555554444 334444321
Q ss_pred CCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCC-CeEEEEcccCCChH
Q 000324 1437 EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENK-IRIVALSTSLANAK 1515 (1665)
Q Consensus 1437 ~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~-~riI~lSATl~n~~ 1515 (1665)
+-++..+...+.. +.+.++||||++.+...+ .. -+.++..+......+ -.++.+|||.. ..
T Consensus 239 ------~~~~~~l~~~L~~------~~~~DlVLIDTaGr~~~~----~~-~l~el~~~l~~~~~~~e~~LVlsat~~-~~ 300 (388)
T PRK12723 239 ------IESFKDLKEEITQ------SKDFDLVLVDTIGKSPKD----FM-KLAEMKELLNACGRDAEFHLAVSSTTK-TS 300 (388)
T ss_pred ------eCcHHHHHHHHHH------hCCCCEEEEcCCCCCccC----HH-HHHHHHHHHHhcCCCCeEEEEEcCCCC-HH
Confidence 2244444443332 357899999999987522 11 255666665544433 46788999975 44
Q ss_pred HHHHHh
Q 000324 1516 DLGEWI 1521 (1665)
Q Consensus 1516 dl~~wl 1521 (1665)
++.+.+
T Consensus 301 ~~~~~~ 306 (388)
T PRK12723 301 DVKEIF 306 (388)
T ss_pred HHHHHH
Confidence 554444
No 387
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=95.33 E-value=0.052 Score=70.44 Aligned_cols=123 Identities=20% Similarity=0.197 Sum_probs=85.0
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000324 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~ 1418 (1665)
+..+|.-|.+|+-.++...+-.+|.+=+|+|||......| +.+.. .++ ++|..+-|..-++.+.-.++ .++
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LI-kiL~~--~gk--kVLLtsyThsAVDNILiKL~-~~~--- 737 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLI-KILVA--LGK--KVLLTSYTHSAVDNILIKLK-GFG--- 737 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHH-HHHHH--cCC--eEEEEehhhHHHHHHHHHHh-ccC---
Confidence 5689999999999999988888999999999998865443 33332 233 89999999999998888777 333
Q ss_pred CcEEEEEe---------------CCCccc-----hhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccC
Q 000324 1419 GMRVVELT---------------GETAMD-----LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1419 ~i~v~~l~---------------G~~~~~-----~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~ 1477 (1665)
+.+..+. .+.+.+ .+.+....||.||-=-+...+.. .+.++++|||||-.+.
T Consensus 738 -i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf~------~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 738 -IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLFV------NRQFDYCIIDEASQIL 809 (1100)
T ss_pred -cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhhh------ccccCEEEEccccccc
Confidence 2222222 222211 24667778999985444332221 2458999999998764
No 388
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.30 E-value=0.037 Score=73.00 Aligned_cols=90 Identities=26% Similarity=0.251 Sum_probs=66.9
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000324 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (1665)
..||+-|.+++. ...++++|.|..|||||.+..--+...+..... .+-+|++++.++..|.++.+++..+
T Consensus 195 ~~L~~~Q~~av~---~~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~-------~~~~IL~ltft~~AA~em~eRL~~~ 264 (684)
T PRK11054 195 SPLNPSQARAVV---NGEDSLLVLAGAGSGKTSVLVARAGWLLARGQA-------QPEQILLLAFGRQAAEEMDERIRER 264 (684)
T ss_pred CCCCHHHHHHHh---CCCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCC-------CHHHeEEEeccHHHHHHHHHHHHHh
Confidence 368999999886 345678999999999999887666665544311 2447999999999999999999876
Q ss_pred hccCCcEEEEEECCCcccHhhhccccEEEeChhhH-HHHHhh
Q 000324 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRK 614 (1665)
Q Consensus 574 ~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekl-d~l~r~ 614 (1665)
++ ...|-|+|-..| ..+.+.
T Consensus 265 lg---------------------~~~v~v~TFHSlal~Il~~ 285 (684)
T PRK11054 265 LG---------------------TEDITARTFHALALHIIQQ 285 (684)
T ss_pred cC---------------------CCCcEEEeHHHHHHHHHHH
Confidence 42 035788998886 334443
No 389
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.23 E-value=0.15 Score=62.13 Aligned_cols=123 Identities=19% Similarity=0.185 Sum_probs=64.4
Q ss_pred HcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEc--ccHHHHHHHHHHHHHhhccCCcEEEEEE
Q 000324 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA--PMKALVAEVVGNLSNRLQMYDVKVRELS 585 (1665)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~ia--P~raLa~q~~~~~~~~~~~~gi~V~~lt 585 (1665)
+..+.+++++||||+|||+.+...+.+...... ..++.++. +.|.-+.++...|.+.+ |+.+.
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G---------~~~V~lit~D~~R~ga~EqL~~~a~~~---gv~~~--- 198 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFG---------ASKVALLTTDSYRIGGHEQLRIFGKIL---GVPVH--- 198 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC---------CCeEEEEecccccccHHHHHHHHHHHc---CCceE---
Confidence 345678999999999999876544443332210 12343333 23444666666666543 33332
Q ss_pred CCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEE
Q 000324 586 GDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVG 665 (1665)
Q Consensus 586 Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~ 665 (1665)
.+.+++.+.....+ +.+.++|+||.+-... +...+...+..+. ......-+++.
T Consensus 199 ---------------~~~~~~~l~~~l~~------l~~~DlVLIDTaG~~~--~d~~l~e~La~L~---~~~~~~~~lLV 252 (374)
T PRK14722 199 ---------------AVKDGGDLQLALAE------LRNKHMVLIDTIGMSQ--RDRTVSDQIAMLH---GADTPVQRLLL 252 (374)
T ss_pred ---------------ecCCcccHHHHHHH------hcCCCEEEEcCCCCCc--ccHHHHHHHHHHh---ccCCCCeEEEE
Confidence 23333333222222 2345899999996442 2222322333221 11223456788
Q ss_pred EcccCC
Q 000324 666 LSATLP 671 (1665)
Q Consensus 666 lSATl~ 671 (1665)
+|||..
T Consensus 253 LsAts~ 258 (374)
T PRK14722 253 LNATSH 258 (374)
T ss_pred ecCccC
Confidence 999964
No 390
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.23 E-value=0.18 Score=52.40 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=16.9
Q ss_pred CCcEEEECCCCChHHHHHHHH
Q 000324 1357 DDNVLVAAPTGSGKTICSEFA 1377 (1665)
Q Consensus 1357 ~dnvlv~ApTGSGKTl~a~l~ 1377 (1665)
...+++.+|+|+|||..+...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i 39 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAI 39 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 556999999999999766443
No 391
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.20 E-value=0.036 Score=73.54 Aligned_cols=92 Identities=20% Similarity=0.153 Sum_probs=68.1
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (1665)
.||+-|.+++.. ...+++|.|..|||||.+..--+.+.+.... .+..+|++++.|+..|.++.+++.+.+
T Consensus 2 ~Ln~~Q~~av~~---~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~-------v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG-------YQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC-------CCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 489999999864 3467999999999999998877777775421 123479999999999999999998765
Q ss_pred ccCCcEEEEEECCCcccHhhhccccEEEeChhhH-HHHHhh
Q 000324 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRK 614 (1665)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekl-d~l~r~ 614 (1665)
+.. ....+.|+|...| ..++|.
T Consensus 72 ~~~------------------~~~~v~i~TfHS~~~~iLr~ 94 (672)
T PRK10919 72 GRK------------------EARGLMISTFHTLGLDIIKR 94 (672)
T ss_pred Ccc------------------cccCcEEEcHHHHHHHHHHH
Confidence 310 0134788999886 344444
No 392
>PRK08181 transposase; Validated
Probab=95.14 E-value=0.18 Score=59.00 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHH---HHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHH
Q 000324 1341 HFNPIQTQVFTV---LYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~---ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~ 1407 (1665)
.+++.|..++.. +...+.|+++++|+|+|||-.+... ...+.. .+. +++|+ +..+|+.+..
T Consensus 87 ~~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Ai-a~~a~~--~g~--~v~f~-~~~~L~~~l~ 150 (269)
T PRK08181 87 MVSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAI-GLALIE--NGW--RVLFT-RTTDLVQKLQ 150 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHH-HHHHHH--cCC--ceeee-eHHHHHHHHH
Confidence 455666666643 3456778999999999999877533 333333 122 45444 5566666553
No 393
>PRK08181 transposase; Validated
Probab=95.14 E-value=0.21 Score=58.43 Aligned_cols=59 Identities=27% Similarity=0.468 Sum_probs=35.5
Q ss_pred CCHHHHHHHH---HHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000324 496 LNRVQSRVYK---SALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (1665)
Q Consensus 496 l~~iQ~~~i~---~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~ 566 (1665)
+++.|..++. ..+....|++++||+|+|||-.+. ++.+.+... +.+++|+ +...|+.++
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~-Aia~~a~~~----------g~~v~f~-~~~~L~~~l 149 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAA-AIGLALIEN----------GWRVLFT-RTTDLVQKL 149 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHH-HHHHHHHHc----------CCceeee-eHHHHHHHH
Confidence 3455555553 234567899999999999997664 344444332 3356555 445555554
No 394
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.14 E-value=0.12 Score=60.60 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=17.2
Q ss_pred CcEEEEccCCCchHHHHHHH
Q 000324 512 DNILLCAPTGAGKTNVAVLT 531 (1665)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~ 531 (1665)
.++++.||+|+|||.++-..
T Consensus 43 ~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHH
Confidence 47999999999999988554
No 395
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=94.99 E-value=0.026 Score=74.61 Aligned_cols=112 Identities=16% Similarity=0.180 Sum_probs=73.7
Q ss_pred EEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeC-CCcc-chhccC
Q 000324 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTG-ETAM-DLKLLE 1437 (1665)
Q Consensus 1360 vlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G-~~~~-~~~~l~ 1437 (1665)
-|.-+.||-|||+++.+|+.-.... +. -+-+|+..--||..=.+ |...+-..+|++|+++.. +.+. ..+..-
T Consensus 185 ~IAEM~TGEGKTLvAtlp~yLnAL~---Gk--gVHvVTVNDYLA~RDae-wmgply~fLGLsvg~i~~~~~~~~~rr~aY 258 (1112)
T PRK12901 185 KIAEMATGEGKTLVATLPVYLNALT---GN--GVHVVTVNDYLAKRDSE-WMGPLYEFHGLSVDCIDKHQPNSEARRKAY 258 (1112)
T ss_pred ceeeecCCCCchhHHHHHHHHHHHc---CC--CcEEEEechhhhhccHH-HHHHHHHHhCCceeecCCCCCCHHHHHHhC
Confidence 5899999999999999998755554 22 24455666667765444 444555567999998866 3333 345556
Q ss_pred CCcEEEEChhhHH-HHHHh-h---hccccCCCccEEEeecccccC
Q 000324 1438 KGQIIISTPEKWD-ALSRR-W---KQRKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1438 ~~~IIV~TPe~l~-~l~r~-~---~~~~~l~~v~llViDEaH~l~ 1477 (1665)
.+||+.+|...|- +.+|. . ..........+.||||+|.++
T Consensus 259 ~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 259 NADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred CCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 7899999998762 12221 1 111223458889999999653
No 396
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.97 E-value=0.093 Score=61.24 Aligned_cols=115 Identities=19% Similarity=0.262 Sum_probs=72.4
Q ss_pred CcEEEECCCCChHHHHHHHHHHHHHHhhcCC----C---CeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCc
Q 000324 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASET----G---VMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETA 1430 (1665)
Q Consensus 1358 dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~----~---~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~ 1430 (1665)
.|++++++||.|||.+. +++....+. . -|-+++-+|...-....|..+-..++...+- .
T Consensus 62 p~lLivG~snnGKT~Ii-----~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~------~--- 127 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII-----ERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRP------R--- 127 (302)
T ss_pred CceEEecCCCCcHHHHH-----HHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCC------C---
Confidence 47999999999999854 444432111 1 1345666777777777777666555432100 0
Q ss_pred cchhccCCCcEEEEChhhH----HHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEE
Q 000324 1431 MDLKLLEKGQIIISTPEKW----DALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVA 1506 (1665)
Q Consensus 1431 ~~~~~l~~~~IIV~TPe~l----~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~ 1506 (1665)
.+...+ ..+++. .+++++||||+|.++...+..-+.++.-++++.+.+ .+.+|+
T Consensus 128 -------------~~~~~~~~~~~~llr~-------~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL--~ipiV~ 185 (302)
T PF05621_consen 128 -------------DRVAKLEQQVLRLLRR-------LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL--QIPIVG 185 (302)
T ss_pred -------------CCHHHHHHHHHHHHHH-------cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc--CCCeEE
Confidence 011222 223332 478999999999987766666778899999987655 455666
Q ss_pred Ec
Q 000324 1507 LS 1508 (1665)
Q Consensus 1507 lS 1508 (1665)
+.
T Consensus 186 vG 187 (302)
T PF05621_consen 186 VG 187 (302)
T ss_pred ec
Confidence 54
No 397
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.97 E-value=0.47 Score=57.59 Aligned_cols=129 Identities=15% Similarity=0.147 Sum_probs=65.2
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEc--ccHHHHHHHHHHHHHhhccCCcEEEEEECCCc
Q 000324 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA--PMKALVAEVVGNLSNRLQMYDVKVRELSGDQT 589 (1665)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~ia--P~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~ 589 (1665)
..+.++||||+|||+.+....... ... +.++.++. |.|.-+.++...+.+. .|+.+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L-~~~----------GkkVglI~aDt~RiaAvEQLk~yae~---lgipv~------- 300 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQF-HGK----------KKTVGFITTDHSRIGTVQQLQDYVKT---IGFEVI------- 300 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHH-HHc----------CCcEEEEecCCcchHHHHHHHHHhhh---cCCcEE-------
Confidence 468899999999988665443332 221 22344333 4555455554444432 232221
Q ss_pred ccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEccc
Q 000324 590 LTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (1665)
Q Consensus 590 ~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSAT 669 (1665)
.+.+|..+....+.... ..+.++|+||-+=..+.. . ..+..+.+.+....+...++.+|||
T Consensus 301 -----------v~~d~~~L~~aL~~lk~---~~~~DvVLIDTaGRs~kd-~----~lm~EL~~~lk~~~PdevlLVLsAT 361 (436)
T PRK11889 301 -----------AVRDEAAMTRALTYFKE---EARVDYILIDTAGKNYRA-S----ETVEEMIETMGQVEPDYICLTLSAS 361 (436)
T ss_pred -----------ecCCHHHHHHHHHHHHh---ccCCCEEEEeCccccCcC-H----HHHHHHHHHHhhcCCCeEEEEECCc
Confidence 23356654222222110 124789999988654422 1 2233333333333344445669998
Q ss_pred CCChHHHHHHHh
Q 000324 670 LPNYEDVALFLR 681 (1665)
Q Consensus 670 l~n~~dv~~~l~ 681 (1665)
.. ..++...+.
T Consensus 362 tk-~~d~~~i~~ 372 (436)
T PRK11889 362 MK-SKDMIEIIT 372 (436)
T ss_pred cC-hHHHHHHHH
Confidence 64 345444443
No 398
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.93 E-value=0.061 Score=55.50 Aligned_cols=45 Identities=24% Similarity=0.402 Sum_probs=28.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000324 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (1665)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~ 566 (1665)
..+++++||+|+|||..+...+ ..+... ...++++.+........
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~-~~~~~~----------~~~~~~~~~~~~~~~~~ 46 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALA-RELGPP----------GGGVIYIDGEDILEEVL 46 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHH-hccCCC----------CCCEEEECCEEccccCH
Confidence 3579999999999998764432 222111 12477887776654433
No 399
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.86 E-value=0.1 Score=60.83 Aligned_cols=121 Identities=19% Similarity=0.136 Sum_probs=64.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEECCCccc
Q 000324 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLT 591 (1665)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~ 591 (1665)
.|++++|+||.|||.+..- ....+....+.-...-+.+++-+|..+=....+..+-..+. ..... .+
T Consensus 62 p~lLivG~snnGKT~Ii~r----F~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lg---aP~~~--~~---- 128 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIER----FRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALG---APYRP--RD---- 128 (302)
T ss_pred CceEEecCCCCcHHHHHHH----HHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhC---cccCC--CC----
Confidence 4899999999999975422 22233221111011124455667877766666666544432 21110 00
Q ss_pred HhhhccccEEEeChhh----HHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEE
Q 000324 592 RQQIEETQIIVTTPEK----WDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGL 666 (1665)
Q Consensus 592 ~~~~~~~~IiV~TPek----ld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~l 666 (1665)
+..+ ...++|.. .++++||||+|.+..+....-..++.-+..... .-.+.+|++
T Consensus 129 ------------~~~~~~~~~~~llr~~-------~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~N--eL~ipiV~v 186 (302)
T PF05621_consen 129 ------------RVAKLEQQVLRLLRRL-------GVRMLIIDEFHNLLAGSYRKQREFLNALKFLGN--ELQIPIVGV 186 (302)
T ss_pred ------------CHHHHHHHHHHHHHHc-------CCcEEEeechHHHhcccHHHHHHHHHHHHHHhh--ccCCCeEEe
Confidence 1111 12344433 379999999999877554444555554433322 335666665
No 400
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=94.85 E-value=0.011 Score=64.03 Aligned_cols=130 Identities=20% Similarity=0.273 Sum_probs=56.1
Q ss_pred EEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhh
Q 000324 515 LLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ 594 (1665)
Q Consensus 515 lv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~ 594 (1665)
++.|+-|-|||.+.-+++...+.. ...+|++.+|..+-++..++.....+..++.+............-.
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~----------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~~~~~~~~ 70 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK----------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRIGQIIKLR 70 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS---------------EEEE-SS--S-HHHHHCC------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh----------cCceEEEecCCHHHHHHHHHHHHhhccccccccccccccccccccc
Confidence 578999999998766555433322 2357999999999999888777666665554441100000000011
Q ss_pred hccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChH
Q 000324 595 IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYE 674 (1665)
Q Consensus 595 ~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~ 674 (1665)
.....|-+..|+. +.... ...+++|||||=.+. -|.+ .++ -.....|.||.|+..|+
T Consensus 71 ~~~~~i~f~~Pd~---l~~~~------~~~DlliVDEAAaIp---~p~L----~~l-------l~~~~~vv~stTi~GYE 127 (177)
T PF05127_consen 71 FNKQRIEFVAPDE---LLAEK------PQADLLIVDEAAAIP---LPLL----KQL-------LRRFPRVVFSTTIHGYE 127 (177)
T ss_dssp --CCC--B--HHH---HCCT----------SCEEECTGGGS----HHHH----HHH-------HCCSSEEEEEEEBSSTT
T ss_pred cccceEEEECCHH---HHhCc------CCCCEEEEechhcCC---HHHH----HHH-------HhhCCEEEEEeeccccc
Confidence 1245677777773 22221 234899999998774 1122 222 12334578899988776
Q ss_pred HHH
Q 000324 675 DVA 677 (1665)
Q Consensus 675 dv~ 677 (1665)
--.
T Consensus 128 GtG 130 (177)
T PF05127_consen 128 GTG 130 (177)
T ss_dssp BB-
T ss_pred cCC
Confidence 543
No 401
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.83 E-value=0.66 Score=53.49 Aligned_cols=62 Identities=11% Similarity=0.112 Sum_probs=35.8
Q ss_pred CCCCCHHHHHHHHHHHc-------CCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHH
Q 000324 1339 FKHFNPIQTQVFTVLYN-------TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER 1406 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~-------~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~ 1406 (1665)
|...++-|.+++..+.. +..++++.+++|+|||..+. ++...+.. .+. .++|+ +..+|....
T Consensus 74 f~~~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~-aia~~l~~--~g~--~v~~i-t~~~l~~~l 142 (244)
T PRK07952 74 YRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAA-AICNELLL--RGK--SVLII-TVADIMSAM 142 (244)
T ss_pred ccCCCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHH-HHHHHHHh--cCC--eEEEE-EHHHHHHHH
Confidence 33334556556554432 12469999999999998874 44555554 122 45555 444554443
No 402
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.81 E-value=0.52 Score=53.65 Aligned_cols=123 Identities=18% Similarity=0.276 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHcCCC----cEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000324 1343 NPIQTQVFTVLYNTDD----NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (1665)
Q Consensus 1343 ~~iQ~qa~~~ll~~~d----nvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~ 1418 (1665)
|..=..+...+..+.+ .+++.+|+|+|||-. +.++...+....++. +++|+... +........+..
T Consensus 16 N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHL-L~Ai~~~~~~~~~~~--~v~y~~~~-~f~~~~~~~~~~------ 85 (219)
T PF00308_consen 16 NELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHL-LQAIANEAQKQHPGK--RVVYLSAE-EFIREFADALRD------ 85 (219)
T ss_dssp THHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHH-HHHHHHHHHHHCTTS---EEEEEHH-HHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHH-HHHHHHHHHhccccc--cceeecHH-HHHHHHHHHHHc------
Confidence 3333444444544332 489999999999995 455666565533444 78877533 444444433320
Q ss_pred CcEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhc
Q 000324 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV 1498 (1665)
Q Consensus 1419 ~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~ 1498 (1665)
+.+..+... +...++++||++|.+.+.. ..-+.+...+..+..
T Consensus 86 ----------------------------~~~~~~~~~------~~~~DlL~iDDi~~l~~~~-~~q~~lf~l~n~~~~-- 128 (219)
T PF00308_consen 86 ----------------------------GEIEEFKDR------LRSADLLIIDDIQFLAGKQ-RTQEELFHLFNRLIE-- 128 (219)
T ss_dssp ----------------------------TSHHHHHHH------HCTSSEEEEETGGGGTTHH-HHHHHHHHHHHHHHH--
T ss_pred ----------------------------ccchhhhhh------hhcCCEEEEecchhhcCch-HHHHHHHHHHHHHHh--
Confidence 011222222 4578999999999996432 233455555555543
Q ss_pred CCCCeEEEEcccCCC
Q 000324 1499 ENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1499 ~~~~riI~lSATl~n 1513 (1665)
.+.++|+.|...|.
T Consensus 129 -~~k~li~ts~~~P~ 142 (219)
T PF00308_consen 129 -SGKQLILTSDRPPS 142 (219)
T ss_dssp -TTSEEEEEESS-TT
T ss_pred -hCCeEEEEeCCCCc
Confidence 35677777766554
No 403
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.77 E-value=0.38 Score=55.44 Aligned_cols=26 Identities=27% Similarity=0.537 Sum_probs=19.8
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHh
Q 000324 512 DNILLCAPTGAGKTNVAVLTILQQLAL 538 (1665)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~ 538 (1665)
.+++++||+|+|||..+. +|...+..
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l~~ 125 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNELLL 125 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHh
Confidence 479999999999998764 55555544
No 404
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=94.77 E-value=0.09 Score=68.73 Aligned_cols=138 Identities=16% Similarity=0.181 Sum_probs=87.5
Q ss_pred CCCHHHHHHHHH---HHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000324 495 QLNRVQSRVYKS---ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1665)
Q Consensus 495 ~l~~iQ~~~i~~---~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (1665)
.|+.+|..-++. +|+.+=|-|+.-.-|-|||..- +.+|.++.-.... -++ =+||+||--+.+ +.-+|+
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQt-ISllAhLACeegn------WGP-HLIVVpTsviLn-WEMElK 685 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQT-ISLLAHLACEEGN------WGP-HLIVVPTSVILN-WEMELK 685 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHH-HHHHHHHHhcccC------CCC-ceEEeechhhhh-hhHHHh
Confidence 577888887765 5777789999999999999755 3334343322111 123 467788865543 334566
Q ss_pred HhhccCCcEEEEEECCCcccHhh---h---ccccEEEeChhhH-HHHHhhcCCCccccceeEEEEecccccccCCchHHH
Q 000324 572 NRLQMYDVKVRELSGDQTLTRQQ---I---EETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLE 644 (1665)
Q Consensus 572 ~~~~~~gi~V~~ltGd~~~~~~~---~---~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le 644 (1665)
+++. |++|..++|...-.+.. + +..||.|+++..+ ..+.- ..-.+++++|+||+|.+.+.+...+.
T Consensus 686 RwcP--glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~A-----FkrkrWqyLvLDEaqnIKnfksqrWQ 758 (1958)
T KOG0391|consen 686 RWCP--GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTA-----FKRKRWQYLVLDEAQNIKNFKSQRWQ 758 (1958)
T ss_pred hhCC--cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHH-----HHhhccceeehhhhhhhcchhHHHHH
Confidence 6544 88999999976533322 2 2458888888753 11111 11224689999999999876655666
Q ss_pred HHHH
Q 000324 645 SIVA 648 (1665)
Q Consensus 645 ~iv~ 648 (1665)
.++.
T Consensus 759 Alln 762 (1958)
T KOG0391|consen 759 ALLN 762 (1958)
T ss_pred HHhc
Confidence 6554
No 405
>PRK14974 cell division protein FtsY; Provisional
Probab=94.70 E-value=0.36 Score=58.17 Aligned_cols=122 Identities=20% Similarity=0.265 Sum_probs=63.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcc--cHHHHHHHHHHHHHhhccCCcEEEEEECCCc
Q 000324 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP--MKALVAEVVGNLSNRLQMYDVKVRELSGDQT 589 (1665)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP--~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~ 589 (1665)
..++++||+|+|||+...-.+ ..+... +.+++++.. .|+-+.++...+... +|+.+.. +...
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA-~~l~~~----------g~~V~li~~Dt~R~~a~eqL~~~a~~---lgv~v~~--~~~g 204 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLA-YYLKKN----------GFSVVIAAGDTFRAGAIEQLEEHAER---LGVKVIK--HKYG 204 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHH-HHHHHc----------CCeEEEecCCcCcHHHHHHHHHHHHH---cCCceec--ccCC
Confidence 358899999999998554333 233321 346666653 345555555555443 3554432 1111
Q ss_pred ccHhhhccccEEEeChhh--HHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000324 590 LTRQQIEETQIIVTTPEK--WDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1665)
Q Consensus 590 ~~~~~~~~~~IiV~TPek--ld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lS 667 (1665)
. .|.. ++.+.... ....++||||.+++++... . ++..+........+...++.++
T Consensus 205 ~-------------dp~~v~~~ai~~~~-----~~~~DvVLIDTaGr~~~~~-~----lm~eL~~i~~~~~pd~~iLVl~ 261 (336)
T PRK14974 205 A-------------DPAAVAYDAIEHAK-----ARGIDVVLIDTAGRMHTDA-N----LMDELKKIVRVTKPDLVIFVGD 261 (336)
T ss_pred C-------------CHHHHHHHHHHHHH-----hCCCCEEEEECCCccCCcH-H----HHHHHHHHHHhhCCceEEEeec
Confidence 1 1111 12222111 1246799999999886321 1 2222222223345667788889
Q ss_pred ccCCC
Q 000324 668 ATLPN 672 (1665)
Q Consensus 668 ATl~n 672 (1665)
||..+
T Consensus 262 a~~g~ 266 (336)
T PRK14974 262 ALAGN 266 (336)
T ss_pred cccch
Confidence 98764
No 406
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=94.69 E-value=0.13 Score=66.98 Aligned_cols=122 Identities=20% Similarity=0.284 Sum_probs=81.1
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000324 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1665)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (1665)
...||.-|++|+..++...+-.+|.|-+|+|||......| +.+.. .+.+|+..+=|-..+..+.-++..
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LI-kiL~~----------~gkkVLLtsyThsAVDNILiKL~~ 735 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLI-KILVA----------LGKKVLLTSYTHSAVDNILIKLKG 735 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHH-HHHHH----------cCCeEEEEehhhHHHHHHHHHHhc
Confidence 4589999999999999998989999999999997654333 33322 255899999998887777655544
Q ss_pred hhccCCcEEEEEECCCcccH--------------------hhhccccEEEeChhhH-HHHHhhcCCCccccceeEEEEec
Q 000324 573 RLQMYDVKVRELSGDQTLTR--------------------QQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDE 631 (1665)
Q Consensus 573 ~~~~~gi~V~~ltGd~~~~~--------------------~~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDE 631 (1665)
.++.+..+..+....+ ...+++.|+.||==-+ +.|. ..+.+++.||||
T Consensus 736 ----~~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf-------~~R~FD~cIiDE 804 (1100)
T KOG1805|consen 736 ----FGIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF-------VNRQFDYCIIDE 804 (1100)
T ss_pred ----cCcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh-------hccccCEEEEcc
Confidence 3554443333332221 1234677888773222 2222 224479999999
Q ss_pred ccccc
Q 000324 632 IHLLH 636 (1665)
Q Consensus 632 aH~l~ 636 (1665)
|-.++
T Consensus 805 ASQI~ 809 (1100)
T KOG1805|consen 805 ASQIL 809 (1100)
T ss_pred ccccc
Confidence 98775
No 407
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=94.63 E-value=0.092 Score=69.73 Aligned_cols=160 Identities=20% Similarity=0.251 Sum_probs=96.8
Q ss_pred CCCCHHHHHHHHHHHc---CCCcEEEECCCCChHHHHHHHHHHHHHHhhc-CCCCeEEEEEcccHHHHHHHHHHHHHHhc
Q 000324 1340 KHFNPIQTQVFTVLYN---TDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll~---~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~-~~~~~r~l~I~PtreLa~Q~~~~~~~~~~ 1415 (1665)
..++.+|-.-++-++. .+.|+|+.-.-|-|||+--.- .|..+.... -.| -.|+|+|.--+. .|...|.
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~-fl~~l~~~~~~~g--pflvvvplst~~-----~W~~ef~ 440 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTIT-FLSYLFHSLQIHG--PFLVVVPLSTIT-----AWEREFE 440 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHH-HHHHHHHhhhccC--CeEEEeehhhhH-----HHHHHHH
Confidence 5788888887776543 467799999999999975422 222222211 233 467888875543 3444444
Q ss_pred CCCCcEEEEEeCCCccch--h----cc------CCCcEEEEChhhHHHHHHhhhccccCC--CccEEEeecccccCCCCc
Q 000324 1416 QGLGMRVVELTGETAMDL--K----LL------EKGQIIISTPEKWDALSRRWKQRKYVQ--QVSLFIIDELHLIGGQGG 1481 (1665)
Q Consensus 1416 ~~~~i~v~~l~G~~~~~~--~----~l------~~~~IIV~TPe~l~~l~r~~~~~~~l~--~v~llViDEaH~l~~~~g 1481 (1665)
.-...++++++|+..... + .. -+.+++++|-+.+..- +..+. ...+++|||||++-....
T Consensus 441 ~w~~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkD------k~~L~~i~w~~~~vDeahrLkN~~~ 514 (1373)
T KOG0384|consen 441 TWTDMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKD------KAELSKIPWRYLLVDEAHRLKNDES 514 (1373)
T ss_pred HHhhhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhcc------HhhhccCCcceeeecHHhhcCchHH
Confidence 334678999999865431 1 01 1358999998876421 11222 346899999999975543
Q ss_pred hhHHHHHHHHHHHHhhcCCCCeEEEEcccCCC-hHHHHHHh
Q 000324 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWI 1521 (1665)
Q Consensus 1482 ~~~e~~~srl~~i~~~~~~~~riI~lSATl~n-~~dl~~wl 1521 (1665)
..|+. +.++..+.+++...++|.| .+++...+
T Consensus 515 ~l~~~--------l~~f~~~~rllitgTPlQNsikEL~sLl 547 (1373)
T KOG0384|consen 515 KLYES--------LNQFKMNHRLLITGTPLQNSLKELWSLL 547 (1373)
T ss_pred HHHHH--------HHHhcccceeeecCCCccccHHHHHHHh
Confidence 33333 2234456666555555665 45665444
No 408
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.59 E-value=0.34 Score=59.82 Aligned_cols=26 Identities=31% Similarity=0.599 Sum_probs=19.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHH
Q 000324 511 ADNILLCAPTGAGKTNVAVLTILQQLA 537 (1665)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~ 537 (1665)
..+++|+||+|+|||.++ ..+++.+.
T Consensus 40 ~~~i~I~G~~GtGKT~l~-~~~~~~l~ 65 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVT-KYVMKELE 65 (365)
T ss_pred CCcEEEECCCCCCHHHHH-HHHHHHHH
Confidence 357999999999999866 34444443
No 409
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=94.58 E-value=0.44 Score=65.35 Aligned_cols=126 Identities=17% Similarity=0.286 Sum_probs=76.9
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000324 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~ 1418 (1665)
-..+++-|.+|+..+..++.-++|.++.|+|||.+.- ++...|.. .+. +++-++||---+....+ . .
T Consensus 379 ~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~-~~~~~~e~--~G~--~V~g~ApTgkAA~~L~e----~----~ 445 (1102)
T PRK13826 379 HARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMK-AAREAWEA--AGY--RVVGGALAGKAAEGLEK----E----A 445 (1102)
T ss_pred CCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHH-HHHHHHHH--cCC--eEEEEcCcHHHHHHHHH----h----h
Confidence 4579999999999887666667899999999998753 34455544 233 89999999665544322 1 1
Q ss_pred CcEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhh-hccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhh
Q 000324 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRW-KQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQ 1497 (1665)
Q Consensus 1419 ~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~-~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~ 1497 (1665)
|+.. .|-.+|. ..| .....+..-++|||||+-++.... +..++..+.
T Consensus 446 Gi~a---------------------~TIas~l---l~~~~~~~~l~~~~vlVIDEAsMv~~~~---m~~Ll~~~~----- 493 (1102)
T PRK13826 446 GIQS---------------------RTLSSWE---LRWNQGRDQLDNKTVFVLDEAGMVASRQ---MALFVEAVT----- 493 (1102)
T ss_pred CCCe---------------------eeHHHHH---hhhccCccCCCCCcEEEEECcccCCHHH---HHHHHHHHH-----
Confidence 2221 1222221 122 123346667899999999996322 222222211
Q ss_pred cCCCCeEEEEccc
Q 000324 1498 VENKIRIVALSTS 1510 (1665)
Q Consensus 1498 ~~~~~riI~lSAT 1510 (1665)
....++|++.=+
T Consensus 494 -~~garvVLVGD~ 505 (1102)
T PRK13826 494 -RAGAKLVLVGDP 505 (1102)
T ss_pred -hcCCEEEEECCH
Confidence 246777777643
No 410
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=94.56 E-value=0.19 Score=64.98 Aligned_cols=74 Identities=22% Similarity=0.354 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHHc---CCCcEEEECCCCChHHHHHHHHHH---HHHHhh---------c-------------------
Q 000324 1341 HFNPIQTQVFTVLYN---TDDNVLVAAPTGSGKTICSEFAIL---RNHQKA---------S------------------- 1386 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll~---~~dnvlv~ApTGSGKTl~a~l~il---~~l~~~---------~------------------- 1386 (1665)
+|+|.|......++. ...|.++.+|||+|||++-+-..| +++... .
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 567788776666543 345699999999999987554443 333311 0
Q ss_pred --C----CCCeEEEEEcccHHHHHHHHHHHHHHhc
Q 000324 1387 --E----TGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (1665)
Q Consensus 1387 --~----~~~~r~l~I~PtreLa~Q~~~~~~~~~~ 1415 (1665)
+ .+-|++.|-.-|..-..|+.++++ +++
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElr-rT~ 134 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELR-RTG 134 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHh-hcC
Confidence 0 012688888899999999999998 554
No 411
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.52 E-value=0.2 Score=57.78 Aligned_cols=45 Identities=20% Similarity=0.268 Sum_probs=28.8
Q ss_pred cccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEcccCC
Q 000324 620 YTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671 (1665)
Q Consensus 620 ~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~ 671 (1665)
....++.||+||||.|..+-. +.+++.++......|+++..--+.
T Consensus 126 ~~~~fKiiIlDEcdsmtsdaq-------~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSDAQ-------AALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CCCcceEEEEechhhhhHHHH-------HHHHHHHhccccceEEEEEcCChh
Confidence 445579999999999864211 123334455566788888765543
No 412
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.50 E-value=0.42 Score=50.93 Aligned_cols=40 Identities=35% Similarity=0.494 Sum_probs=26.4
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHH
Q 000324 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (1665)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~ 564 (1665)
++|+||+|+|||..+...+..... .+..++|+..-..+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~-----------~~~~v~~~~~e~~~~~ 41 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT-----------KGGKVVYVDIEEEIEE 41 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh-----------cCCEEEEEECCcchHH
Confidence 689999999999877554443322 1346888776555433
No 413
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=94.48 E-value=0.16 Score=62.56 Aligned_cols=124 Identities=24% Similarity=0.371 Sum_probs=73.0
Q ss_pred CCCHHHHHHHHHHH-----cCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHH--HHHHHHH
Q 000324 1341 HFNPIQTQVFTVLY-----NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER--YRDWEIK 1413 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll-----~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~--~~~~~~~ 1413 (1665)
++|+-|.+++..++ ..+.+++|.+|-|+|||.+.-. +...+.. .+. .+++++||-.-|..+ -..+...
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~-i~~~~~~--~~~--~~~~~a~tg~AA~~i~~G~T~hs~ 75 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKA-IIDYLRS--RGK--KVLVTAPTGIAAFNIPGGRTIHSF 75 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHH-HHHHhcc--ccc--eEEEecchHHHHHhccCCcchHHh
Confidence 47889999988873 2456799999999999987632 3333332 222 788999997766655 2222222
Q ss_pred hcCCCCcEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHH
Q 000324 1414 FGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRY 1493 (1665)
Q Consensus 1414 ~~~~~~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~ 1493 (1665)
|+ +.+.. . . ... +.+.+-. ..+..+.+++++|+||+=++.. ..+..+-.+++.
T Consensus 76 f~----i~~~~---~-~-------~~~---~~~~~~~------~~~~~l~~~~~lIiDEism~~~---~~l~~i~~~lr~ 128 (364)
T PF05970_consen 76 FG----IPINN---N-E-------KSQ---CKISKNS------RLRERLRKADVLIIDEISMVSA---DMLDAIDRRLRD 128 (364)
T ss_pred cC----ccccc---c-c-------ccc---ccccccc------hhhhhhhhheeeecccccchhH---HHHHHHHHhhhh
Confidence 22 11100 0 0 000 0111111 1234577899999999998853 345556666776
Q ss_pred HHh
Q 000324 1494 IAS 1496 (1665)
Q Consensus 1494 i~~ 1496 (1665)
+..
T Consensus 129 i~~ 131 (364)
T PF05970_consen 129 IRK 131 (364)
T ss_pred hhc
Confidence 655
No 414
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.47 E-value=0.52 Score=53.65 Aligned_cols=123 Identities=20% Similarity=0.306 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHcCCC----cEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000324 497 NRVQSRVYKSALSSAD----NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1665)
Q Consensus 497 ~~iQ~~~i~~~l~~~~----nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (1665)
|..=..+...+....+ .++++||+|+|||-. +.++.+.+.... ++.+++|+... +...+....+..
T Consensus 16 N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHL-L~Ai~~~~~~~~--------~~~~v~y~~~~-~f~~~~~~~~~~ 85 (219)
T PF00308_consen 16 NELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHL-LQAIANEAQKQH--------PGKRVVYLSAE-EFIREFADALRD 85 (219)
T ss_dssp THHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHH-HHHHHHHHHHHC--------TTS-EEEEEHH-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHH-HHHHHHHHHhcc--------ccccceeecHH-HHHHHHHHHHHc
Confidence 4443444444444322 489999999999984 456666655421 24578887543 344443333321
Q ss_pred hhccCCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHH
Q 000324 573 RLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVR 652 (1665)
Q Consensus 573 ~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~ 652 (1665)
...+ .+.. .+...++++||.+|.+.+. +..+..+-.+..
T Consensus 86 ------------------------------~~~~---~~~~------~~~~~DlL~iDDi~~l~~~--~~~q~~lf~l~n 124 (219)
T PF00308_consen 86 ------------------------------GEIE---EFKD------RLRSADLLIIDDIQFLAGK--QRTQEELFHLFN 124 (219)
T ss_dssp ------------------------------TSHH---HHHH------HHCTSSEEEEETGGGGTTH--HHHHHHHHHHHH
T ss_pred ------------------------------ccch---hhhh------hhhcCCEEEEecchhhcCc--hHHHHHHHHHHH
Confidence 0111 1222 2335789999999998642 222223333333
Q ss_pred HHhhccCCeeEEEEcccCCC
Q 000324 653 QIETTKEHIRLVGLSATLPN 672 (1665)
Q Consensus 653 ~~~~~~~~~riV~lSATl~n 672 (1665)
.+. ..+.++|+.|...|+
T Consensus 125 ~~~--~~~k~li~ts~~~P~ 142 (219)
T PF00308_consen 125 RLI--ESGKQLILTSDRPPS 142 (219)
T ss_dssp HHH--HTTSEEEEEESS-TT
T ss_pred HHH--hhCCeEEEEeCCCCc
Confidence 222 235577777767664
No 415
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.47 E-value=0.31 Score=55.82 Aligned_cols=33 Identities=12% Similarity=0.189 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHc---CCCcEEEEccCCCchHHHHH
Q 000324 497 NRVQSRVYKSALS---SADNILLCAPTGAGKTNVAV 529 (1665)
Q Consensus 497 ~~iQ~~~i~~~l~---~~~nvlv~APTGsGKT~~a~ 529 (1665)
+.....++..+.. ...+++++||+|+|||..+.
T Consensus 25 ~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 25 NAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred cHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHH
Confidence 3344444544433 34679999999999997664
No 416
>PHA02533 17 large terminase protein; Provisional
Probab=94.37 E-value=0.59 Score=60.03 Aligned_cols=123 Identities=12% Similarity=0.048 Sum_probs=74.4
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000324 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i 1420 (1665)
.++|+|...+..+..++- .++..+=..|||.+....++..... .++. .+++++|+++-+..+++.++..+......
T Consensus 59 ~L~p~Q~~i~~~~~~~R~-~ii~~aRq~GKStl~a~~al~~a~~-~~~~--~v~i~A~~~~QA~~vF~~ik~~ie~~P~l 134 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRF-NACNLSRQLGKTTVVAIFLLHYVCF-NKDK--NVGILAHKASMAAEVLDRTKQAIELLPDF 134 (534)
T ss_pred CCcHHHHHHHHHHhcCeE-EEEEEcCcCChHHHHHHHHHHHHHh-CCCC--EEEEEeCCHHHHHHHHHHHHHHHHhCHHH
Confidence 588999999988755444 5788889999999987544443333 2333 89999999999999999888544322111
Q ss_pred -EEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccC
Q 000324 1421 -RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1421 -~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~ 1477 (1665)
+.. +.........+-.++.|.+.|... . . ..=.+..++|+||+|.+.
T Consensus 135 ~~~~-i~~~~~~~I~l~NGS~I~~lss~~-~----t----~rG~~~~~liiDE~a~~~ 182 (534)
T PHA02533 135 LQPG-IVEWNKGSIELENGSKIGAYASSP-D----A----VRGNSFAMIYIDECAFIP 182 (534)
T ss_pred hhcc-eeecCccEEEeCCCCEEEEEeCCC-C----c----cCCCCCceEEEeccccCC
Confidence 111 111111111122344554544221 0 0 111256789999999874
No 417
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=94.29 E-value=0.37 Score=60.16 Aligned_cols=137 Identities=13% Similarity=0.203 Sum_probs=84.4
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHH-HHHHHHHHHHHhhccCCcEEEEEECCCccc
Q 000324 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA-LVAEVVGNLSNRLQMYDVKVRELSGDQTLT 591 (1665)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ra-La~q~~~~~~~~~~~~gi~V~~ltGd~~~~ 591 (1665)
-.+++|..|||||.++.+.++..+.... .+.+++++.|+.. |...++..+...+..+|+....-..+....
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~--------~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~~ 74 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINK--------KQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSME 74 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcC--------CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCccE
Confidence 3678999999999999888887776641 2457999999887 777788888887777665432222222111
Q ss_pred Hhhhc-cccEEEeCh-hhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEccc
Q 000324 592 RQQIE-ETQIIVTTP-EKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (1665)
Q Consensus 592 ~~~~~-~~~IiV~TP-ekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSAT 669 (1665)
-.... +..|++..- +..+.+. ....+.++.+|||..+.. ..++.++.|++. +...+.|.+|.|
T Consensus 75 i~~~~~g~~i~f~g~~d~~~~ik-------~~~~~~~~~idEa~~~~~---~~~~~l~~rlr~-----~~~~~~i~~t~N 139 (396)
T TIGR01547 75 IKILNTGKKFIFKGLNDKPNKLK-------SGAGIAIIWFEEASQLTF---EDIKELIPRLRE-----TGGKKFIIFSSN 139 (396)
T ss_pred EEecCCCeEEEeecccCChhHhh-------CcceeeeehhhhhhhcCH---HHHHHHHHHhhc-----cCCccEEEEEcC
Confidence 11112 345666443 3322221 122368999999998853 367777776421 122224677777
Q ss_pred CCC
Q 000324 670 LPN 672 (1665)
Q Consensus 670 l~n 672 (1665)
.+.
T Consensus 140 P~~ 142 (396)
T TIGR01547 140 PES 142 (396)
T ss_pred cCC
Confidence 554
No 418
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.22 E-value=0.59 Score=61.02 Aligned_cols=143 Identities=20% Similarity=0.265 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHcCCC-cEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhcc
Q 000324 498 RVQSRVYKSALSSAD-NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQM 576 (1665)
Q Consensus 498 ~iQ~~~i~~~l~~~~-nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~ 576 (1665)
.-|.+.|..++..+. .+++.|.=|=|||.++=+++.. +.... ....|++++|+++-++..+.-..+.+..
T Consensus 217 ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~-~~~~~--------~~~~iiVTAP~~~nv~~Lf~fa~~~l~~ 287 (758)
T COG1444 217 AEALEILERLLDAPKRALVLTADRGRGKSAALGIALAA-AARLA--------GSVRIIVTAPTPANVQTLFEFAGKGLEF 287 (758)
T ss_pred HHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHH-HHHhc--------CCceEEEeCCCHHHHHHHHHHHHHhHHH
Confidence 344445666676655 7889999999999988877733 33221 0358999999999999998888887777
Q ss_pred CCcEEEEEECC-CcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHh
Q 000324 577 YDVKVRELSGD-QTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIE 655 (1665)
Q Consensus 577 ~gi~V~~ltGd-~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~ 655 (1665)
+|.+-.+.... ............|=+-+|.. .. + .-+++|||||=.+. -|.++.++.+
T Consensus 288 lg~~~~v~~d~~g~~~~~~~~~~~i~y~~P~~--a~-~---------~~DllvVDEAAaIp---lplL~~l~~~------ 346 (758)
T COG1444 288 LGYKRKVAPDALGEIREVSGDGFRIEYVPPDD--AQ-E---------EADLLVVDEAAAIP---LPLLHKLLRR------ 346 (758)
T ss_pred hCCccccccccccceeeecCCceeEEeeCcch--hc-c---------cCCEEEEehhhcCC---hHHHHHHHhh------
Confidence 76553222211 11111111233466677763 11 1 14799999998775 2334444332
Q ss_pred hccCCeeEEEEcccCCChHH
Q 000324 656 TTKEHIRLVGLSATLPNYED 675 (1665)
Q Consensus 656 ~~~~~~riV~lSATl~n~~d 675 (1665)
.+.++||.|+..|+-
T Consensus 347 -----~~rv~~sTTIhGYEG 361 (758)
T COG1444 347 -----FPRVLFSTTIHGYEG 361 (758)
T ss_pred -----cCceEEEeeeccccc
Confidence 245999999987763
No 419
>CHL00181 cbbX CbbX; Provisional
Probab=94.15 E-value=0.4 Score=56.85 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=17.0
Q ss_pred CcEEEEccCCCchHHHHHHH
Q 000324 512 DNILLCAPTGAGKTNVAVLT 531 (1665)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~ 531 (1665)
-++++.||+|+|||.+|-..
T Consensus 60 ~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 36899999999999988554
No 420
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.15 E-value=0.24 Score=62.56 Aligned_cols=42 Identities=21% Similarity=0.498 Sum_probs=26.5
Q ss_pred ccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000324 619 TYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1665)
Q Consensus 619 ~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lS 667 (1665)
+.....+++||||+|.|.. ..+. .+++.++..++.+.+|+.+
T Consensus 112 P~~~~~KVvIIDEah~Ls~---~A~N----aLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 112 PISSKFKVYIIDEVHMLSN---SAFN----ALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred cccCCceEEEEeChHhCCH---HHHH----HHHHHHhCCCCCeEEEEEe
Confidence 3456789999999999863 2223 3344455555566666543
No 421
>PRK04296 thymidine kinase; Provisional
Probab=94.08 E-value=0.034 Score=61.81 Aligned_cols=35 Identities=11% Similarity=0.161 Sum_probs=24.8
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcc
Q 000324 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1665)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (1665)
-.++.||+|+|||+.++-.+.+.... +.+++|+-|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~-----------g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEER-----------GMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHc-----------CCeEEEEec
Confidence 36889999999998776665554432 346777766
No 422
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.07 E-value=0.13 Score=61.50 Aligned_cols=62 Identities=21% Similarity=0.272 Sum_probs=47.7
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHH
Q 000324 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa 1403 (1665)
...+++.|.+.+..+...+.|++++++||||||... -+++..+...++.. +++.|-.+.||.
T Consensus 126 ~g~~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~~~~--rivtiEd~~El~ 187 (323)
T PRK13833 126 SKIMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASAPED--RLVILEDTAEIQ 187 (323)
T ss_pred cCCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCCCCc--eEEEecCCcccc
Confidence 345788999999998888899999999999999876 45565554323333 888888888873
No 423
>PRK08727 hypothetical protein; Validated
Probab=94.05 E-value=0.37 Score=55.46 Aligned_cols=25 Identities=32% Similarity=0.583 Sum_probs=17.9
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHH
Q 000324 512 DNILLCAPTGAGKTNVAVLTILQQLA 537 (1665)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~ 537 (1665)
+.++++||+|+|||-.+. ++.+.+.
T Consensus 42 ~~l~l~G~~G~GKThL~~-a~~~~~~ 66 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLAL-ALCAAAE 66 (233)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 349999999999997654 4444443
No 424
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=94.04 E-value=0.2 Score=52.73 Aligned_cols=86 Identities=21% Similarity=0.289 Sum_probs=57.3
Q ss_pred EEecCCCCHHHHHHHHHHHhCCC-CCeEEeccccccccCCCce---EEEEecccccCCCCC-----------------Cc
Q 000324 798 AIHHAGMTRGDRQLVEDLFGDGH-VQVLVSTATLAWGVNLPAH---TVIIKGTQIYNPEKG-----------------AW 856 (1665)
Q Consensus 798 ~~~Hagm~~~dR~~v~~~F~~g~-i~VLVaT~tla~GVdlP~v---~vVI~~t~~yd~~~g-----------------~~ 856 (1665)
.++.-+....+...+.+.|+... ..||++|..++.|||+|+. .|||.| .||-++.. .+
T Consensus 25 ~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~g-lPfp~~~d~~~~~~~~~~~~~~~~~~~ 103 (141)
T smart00492 25 LLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDG-LPFPYPDSPILKARLELLRDKGQIRPF 103 (141)
T ss_pred eEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEe-cCCCCCCCHHHHHHHHHHHHhCCCCch
Confidence 44455566667788999998654 3799999889999999984 455655 44432221 11
Q ss_pred cc----CCHHHHHhhhcccCCCCCCCceEEEEE
Q 000324 857 TE----LSPLDIMQMLGRAGRPQYDSYGEGIII 885 (1665)
Q Consensus 857 ~~----~s~~~~~Qr~GRAGR~g~d~~G~~iil 885 (1665)
.. .....+.|.+||+-|... ..|..+++
T Consensus 104 ~~~~~~~a~~~l~Qa~GR~iR~~~-D~g~i~l~ 135 (141)
T smart00492 104 DFVSLPDAMRTLAQCVGRLIRGAN-DYGVVVIA 135 (141)
T ss_pred hHHHHHHHHHHHHHHhCccccCcC-ceEEEEEE
Confidence 21 224678899999999764 46755554
No 425
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.99 E-value=0.088 Score=58.11 Aligned_cols=48 Identities=27% Similarity=0.301 Sum_probs=32.4
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000324 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1665)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (1665)
.++|.||+|+|||..++..+...+.. +.+++|+..- +-..++.+++..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~-----------g~~v~~~s~e-~~~~~~~~~~~~ 48 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR-----------GEPGLYVTLE-ESPEELIENAES 48 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC-----------CCcEEEEECC-CCHHHHHHHHHH
Confidence 37899999999999887766665532 3368888653 445555555543
No 426
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=93.98 E-value=0.16 Score=65.34 Aligned_cols=146 Identities=15% Similarity=0.226 Sum_probs=78.8
Q ss_pred cCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHH---HHHHh-cCC-CCcEEEEEeCCC
Q 000324 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD---WEIKF-GQG-LGMRVVELTGET 1429 (1665)
Q Consensus 1355 ~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~---~~~~~-~~~-~~i~v~~l~G~~ 1429 (1665)
.+.-|+=|.|.||+|||.||+-.|...-... |-.+-|++||+.|.-.-++.. ...-| +.. .+.+.-.+.-+.
T Consensus 72 ~~~lNiDI~METGTGKTy~YlrtmfeLhk~Y---G~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~ 148 (985)
T COG3587 72 DDKLNIDILMETGTGKTYTYLRTMFELHKKY---GLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDE 148 (985)
T ss_pred CCcceeeEEEecCCCceeeHHHHHHHHHHHh---CceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeech
Confidence 3445788999999999999988887655542 223899999999986654333 33344 222 223333332221
Q ss_pred cc---chhccCCCcEEEEChhhHHHH------HH----hhhc-----ccc---CC-CccEEEeecccccCCCCchhHHHH
Q 000324 1430 AM---DLKLLEKGQIIISTPEKWDAL------SR----RWKQ-----RKY---VQ-QVSLFIIDELHLIGGQGGPVLEVI 1487 (1665)
Q Consensus 1430 ~~---~~~~l~~~~IIV~TPe~l~~l------~r----~~~~-----~~~---l~-~v~llViDEaH~l~~~~g~~~e~~ 1487 (1665)
.. ....-..+.+++.|...++.- +. .... ... +. .=-.+||||-|++.++ ...|
T Consensus 149 ~~~~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~-~k~~--- 224 (985)
T COG3587 149 DIEKFKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD-DKTY--- 224 (985)
T ss_pred HHHHHhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccc-hHHH---
Confidence 11 111223446666665544321 00 0000 000 11 1137999999999753 1122
Q ss_pred HHHHHHHHhhcCCCCeEEEEcccCCC
Q 000324 1488 VSRMRYIASQVENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1488 ~srl~~i~~~~~~~~riI~lSATl~n 1513 (1665)
..+..+ .+.-++=+|||.++
T Consensus 225 -~~i~~l-----~pl~ilRfgATfkd 244 (985)
T COG3587 225 -GAIKQL-----NPLLILRFGATFKD 244 (985)
T ss_pred -HHHHhh-----CceEEEEecccchh
Confidence 222222 24446778999875
No 427
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=93.98 E-value=0.57 Score=59.17 Aligned_cols=109 Identities=13% Similarity=0.188 Sum_probs=63.8
Q ss_pred CcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchhccC
Q 000324 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLE 1437 (1665)
Q Consensus 1358 dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~l~ 1437 (1665)
..+++.+++|+|||... -++.+.+....++. +++|+.+ .++..+....+....
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~--~v~yv~~-~~f~~~~~~~l~~~~----------------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFSDL--KVSYMSG-DEFARKAVDILQKTH----------------------- 194 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCCCC--eEEEEEH-HHHHHHHHHHHHHhh-----------------------
Confidence 34899999999999765 45666665533333 7777655 566666555443100
Q ss_pred CCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCC
Q 000324 1438 KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (1665)
Q Consensus 1438 ~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~ 1512 (1665)
+.+..+... +.+++++||||+|.+.... ...+.+..-++.+.. .+.|+|+.|-..|
T Consensus 195 ---------~~~~~~~~~------~~~~dvLiIDDiq~l~~k~-~~~e~lf~l~N~~~~---~~k~iIltsd~~P 250 (450)
T PRK14087 195 ---------KEIEQFKNE------ICQNDVLIIDDVQFLSYKE-KTNEIFFTIFNNFIE---NDKQLFFSSDKSP 250 (450)
T ss_pred ---------hHHHHHHHH------hccCCEEEEeccccccCCH-HHHHHHHHHHHHHHH---cCCcEEEECCCCH
Confidence 112222222 4578999999999885422 234555555555532 3446666555433
No 428
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=93.97 E-value=0.12 Score=69.24 Aligned_cols=86 Identities=20% Similarity=0.148 Sum_probs=65.7
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (1665)
.||+-|.+++.. ...+++|.|..|||||.+..--|.+.+..... ...+|++|+.|+..|.++.+++.+.+
T Consensus 1 ~Ln~~Q~~av~~---~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~-------~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 1 KLNPQQQEAVEY---VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGY-------KARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCC-------CHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 379999998863 34679999999999999888777777754211 23479999999999999999998765
Q ss_pred ccCCcEEEEEECCCcccHhhhccccEEEeChhhH
Q 000324 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW 608 (1665)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekl 608 (1665)
+.. ...++-|+|-..|
T Consensus 71 ~~~------------------~~~~v~v~TfHs~ 86 (664)
T TIGR01074 71 GKG------------------EARGLTISTFHTL 86 (664)
T ss_pred Ccc------------------ccCCeEEEeHHHH
Confidence 310 1245789999986
No 429
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.93 E-value=0.5 Score=55.54 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=28.1
Q ss_pred CCCCCHHHHHHHHHHH---c-CCCcEEEECCCCChHHHHHHH
Q 000324 1339 FKHFNPIQTQVFTVLY---N-TDDNVLVAAPTGSGKTICSEF 1376 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll---~-~~dnvlv~ApTGSGKTl~a~l 1376 (1665)
+-.+++.+.+++..+- . +...+++.+|+|+|||..+..
T Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~ 62 (269)
T TIGR03015 21 FFYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRN 62 (269)
T ss_pred HhCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 4566777777777653 2 344689999999999988754
No 430
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=93.92 E-value=0.13 Score=69.14 Aligned_cols=109 Identities=22% Similarity=0.196 Sum_probs=74.7
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000324 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (1665)
..||+-|.+++.. ...+++|.|..|||||.+..--+.+.+.... .+..+|++++.|+..|.++.+++.+.
T Consensus 3 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~-------v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 3 DGLNDKQREAVAA---PPGNLLVLAGAGSGKTRVLTHRIAWLLSVEN-------ASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred cccCHHHHHHHcC---CCCCEEEEecCCCCHHHHHHHHHHHHHHcCC-------CCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 4689999998863 3457999999999999987766666664321 12447999999999999999999886
Q ss_pred hccCCcEEEEEECCCcccHhhhccccEEEeChhhH-HHHHhhcCC-CccccceeEEEEeccc
Q 000324 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKSGD-RTYTQLVKLLIIDEIH 633 (1665)
Q Consensus 574 ~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekl-d~l~r~~~~-~~~l~~v~liIiDEaH 633 (1665)
++. + ...+.|+|-..| ..++|.... ...-. .+-|+|+.+
T Consensus 73 ~~~----------~---------~~~~~i~TfHs~~~~iLr~~~~~~g~~~--~f~i~d~~d 113 (715)
T TIGR01075 73 LGT----------S---------ARGMWIGTFHGLAHRLLRAHHLDAGLPQ--DFQILDSDD 113 (715)
T ss_pred hcc----------c---------ccCcEEEcHHHHHHHHHHHHHHHhCCCC--CCeecCHHH
Confidence 431 0 125788999986 344444321 11111 244677765
No 431
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=93.92 E-value=0.052 Score=53.74 Aligned_cols=65 Identities=14% Similarity=0.043 Sum_probs=44.3
Q ss_pred HHHHHhHcCCcccccCCCccccChHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHhcCCccCCCCcCCh
Q 000324 975 AATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQ 1046 (1665)
Q Consensus 975 a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~~s~s~Ef~~i~~R~ 1046 (1665)
|+..|...|+|+.+ + .+|++|+.++.++++|+-.+++.......+. .+++.+.|.-++ .++.++.
T Consensus 2 A~~~L~~Lgald~~---~--~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~-~~~~~iaa~ls~-~~~f~~~ 66 (102)
T PF04408_consen 2 ALELLKSLGALDEN---G--NLTPLGRKMSQLPLDPRLAKMLLYGIQFGCL-DEALIIAAILSV-RSPFINP 66 (102)
T ss_dssp HHHHHHHTTSB-TT---S---B-HHHHHHTTSSS-HHHHHHHHHHHHCT-H-HHHHHHHHHHTS-S--B---
T ss_pred HHHHHHHCCCCCCC---C--CcCHHHHHHHHCCCchHhHhHhhhccccccH-HHHHHHHHHHcC-CCcccCc
Confidence 77899999999644 2 8999999999999999999999887777763 556666666555 6666664
No 432
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=93.91 E-value=0.6 Score=61.28 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=24.2
Q ss_pred CCcE-EEECCCCChHHHHHHHHHHHHHHhhcCC---CCeEEEEEc
Q 000324 1357 DDNV-LVAAPTGSGKTICSEFAILRNHQKASET---GVMRAVYIA 1397 (1665)
Q Consensus 1357 ~dnv-lv~ApTGSGKTl~a~l~il~~l~~~~~~---~~~r~l~I~ 1397 (1665)
..++ +|.++||+|||++.-.. ++.+...... ..+..++|-
T Consensus 780 pnnvLYIyG~PGTGKTATVK~V-LrELqeeaeqk~lp~f~vVYIN 823 (1164)
T PTZ00112 780 SNQILYISGMPGTGKTATVYSV-IQLLQHKTKQKLLPSFNVFEIN 823 (1164)
T ss_pred CCceEEEECCCCCCHHHHHHHH-HHHHHHHHhhccCCCceEEEEe
Confidence 3355 59999999999997554 3444331111 124567773
No 433
>PRK08116 hypothetical protein; Validated
Probab=93.90 E-value=0.69 Score=54.33 Aligned_cols=45 Identities=16% Similarity=0.238 Sum_probs=29.9
Q ss_pred cEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHH
Q 000324 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (1665)
Q Consensus 1359 nvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~ 1409 (1665)
.+++.+++|+|||..+. ++.+.+... +. .++|+ +..+++.++...
T Consensus 116 gl~l~G~~GtGKThLa~-aia~~l~~~--~~--~v~~~-~~~~ll~~i~~~ 160 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAA-CIANELIEK--GV--PVIFV-NFPQLLNRIKST 160 (268)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHHHc--CC--eEEEE-EHHHHHHHHHHH
Confidence 39999999999999885 566666652 22 44444 556666554443
No 434
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.90 E-value=0.13 Score=61.66 Aligned_cols=61 Identities=25% Similarity=0.240 Sum_probs=45.8
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHH
Q 000324 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEAL 1402 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreL 1402 (1665)
...+++.|.+.+..+..++.|++++++||||||... -+++..+....+.. ++++|-.+.||
T Consensus 130 ~g~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~aL~~~~~~~~~~~--rivtIEd~~El 190 (319)
T PRK13894 130 RGIMTAAQREAIIAAVRAHRNILVIGGTGSGKTTLV-NAIINEMVIQDPTE--RVFIIEDTGEI 190 (319)
T ss_pred cCCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHhhhhcCCCc--eEEEEcCCCcc
Confidence 345778899999988888899999999999999554 55555443222333 88888888876
No 435
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.90 E-value=0.11 Score=63.91 Aligned_cols=152 Identities=14% Similarity=0.159 Sum_probs=81.1
Q ss_pred EECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchhc------
Q 000324 1362 VAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKL------ 1435 (1665)
Q Consensus 1362 v~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~------ 1435 (1665)
..+.||||||++..-.||....+... .-|+.|..-..++.....+........=..-....++.....+.
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgyr----~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fse 77 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGYR----NFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSE 77 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhchh----hEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCc
Confidence 35789999999988888877666322 57777777777776665554222110000001111222221111
Q ss_pred -cCCCcEEEEChhhHHHHHHhhhcc----ccCCCcc-EEEeecccccCCCC----------chhHHHHHHHHHHHHhhcC
Q 000324 1436 -LEKGQIIISTPEKWDALSRRWKQR----KYVQQVS-LFIIDELHLIGGQG----------GPVLEVIVSRMRYIASQVE 1499 (1665)
Q Consensus 1436 -l~~~~IIV~TPe~l~~l~r~~~~~----~~l~~v~-llViDEaH~l~~~~----------g~~~e~~~srl~~i~~~~~ 1499 (1665)
-..-.|..+|.+.+.....+-+.. ..+.+.. +++-||+|++.... -..|+.. +.... .-.
T Consensus 78 hnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~---v~la~-~~n 153 (812)
T COG3421 78 HNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESV---VKLAL-EQN 153 (812)
T ss_pred cCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHH---HHHHH-hcC
Confidence 122379999999986655442221 1233333 45679999997521 1112221 11111 224
Q ss_pred CCCeEEEEcccCCChHHHHHHh
Q 000324 1500 NKIRIVALSTSLANAKDLGEWI 1521 (1665)
Q Consensus 1500 ~~~riI~lSATl~n~~dl~~wl 1521 (1665)
++.-++.+|||++...++..-.
T Consensus 154 kd~~~lef~at~~k~k~v~~ky 175 (812)
T COG3421 154 KDNLLLEFSATIPKEKSVEDKY 175 (812)
T ss_pred CCceeehhhhcCCccccHHHHh
Confidence 4556678899998655555444
No 436
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.90 E-value=0.19 Score=64.62 Aligned_cols=30 Identities=33% Similarity=0.488 Sum_probs=21.0
Q ss_pred HHHHHHHcCC---CcEEEEccCCCchHHHHHHH
Q 000324 502 RVYKSALSSA---DNILLCAPTGAGKTNVAVLT 531 (1665)
Q Consensus 502 ~~i~~~l~~~---~nvlv~APTGsGKT~~a~l~ 531 (1665)
+.+..++.++ ..+|++||.|+|||.+|.+.
T Consensus 25 ~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriL 57 (702)
T PRK14960 25 RALSSALERGRLHHAYLFTGTRGVGKTTIARIL 57 (702)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 3444555544 35699999999999888543
No 437
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=93.89 E-value=0.23 Score=66.00 Aligned_cols=157 Identities=17% Similarity=0.227 Sum_probs=97.3
Q ss_pred CCCHHHHHHHHHH--HcC-CCcEEEECCCCChHHHHHHHHHHHHHHhhc----CCCCeEEEEEcccHHHHHHHHHHHHHH
Q 000324 1341 HFNPIQTQVFTVL--YNT-DDNVLVAAPTGSGKTICSEFAILRNHQKAS----ETGVMRAVYIAPLEALAKERYRDWEIK 1413 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~l--l~~-~dnvlv~ApTGSGKTl~a~l~il~~l~~~~----~~~~~r~l~I~PtreLa~Q~~~~~~~~ 1413 (1665)
.++.+|.+-++.+ ++. .=+-|+|---|=|||+-..-.+..-....+ .-...-.|||||. .|+.-+..+|. +
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~-k 1052 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVK-K 1052 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHH-H
Confidence 5677888877754 222 225799999999999976444333222211 0111237999997 68888999998 5
Q ss_pred hcCCCCcEEEEEeCCCccchh---ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHH
Q 000324 1414 FGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSR 1490 (1665)
Q Consensus 1414 ~~~~~~i~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~sr 1490 (1665)
|... ++|..+.|....... ..++++|||++.+.+-+-.-.... ....++|+||-|-|-... ++
T Consensus 1053 f~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l~~----~~wNYcVLDEGHVikN~k--------tk 1118 (1549)
T KOG0392|consen 1053 FFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDYLIK----IDWNYCVLDEGHVIKNSK--------TK 1118 (1549)
T ss_pred hcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHHHHh----cccceEEecCcceecchH--------HH
Confidence 6554 677778887655433 445679999998876421111111 245699999999986433 23
Q ss_pred HHHHHhhcCCCCeEEEEcccCCC
Q 000324 1491 MRYIASQVENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1491 l~~i~~~~~~~~riI~lSATl~n 1513 (1665)
+....+++..+.|+|+-.+++.|
T Consensus 1119 l~kavkqL~a~hRLILSGTPIQN 1141 (1549)
T KOG0392|consen 1119 LTKAVKQLRANHRLILSGTPIQN 1141 (1549)
T ss_pred HHHHHHHHhhcceEEeeCCCccc
Confidence 33333344556676654444555
No 438
>PRK08116 hypothetical protein; Validated
Probab=93.84 E-value=0.84 Score=53.61 Aligned_cols=80 Identities=23% Similarity=0.372 Sum_probs=45.7
Q ss_pred cccCCCChhhH-hhcCCCCCCCHHHHHHHHHHH---c-----CCCc--EEEEccCCCchHHHHHHHHHHHHHhcCCCCCC
Q 000324 477 IKISEMPEWAQ-PAFKGMTQLNRVQSRVYKSAL---S-----SADN--ILLCAPTGAGKTNVAVLTILQQLALNRNDDGS 545 (1665)
Q Consensus 477 ~~i~~Lp~~~~-~~f~g~~~l~~iQ~~~i~~~l---~-----~~~n--vlv~APTGsGKT~~a~l~il~~l~~~~~~~g~ 545 (1665)
...+.+|+.+. ..|.+|. .++-|..++..+. . ...+ +++.||+|+|||..+. +|.+.+...
T Consensus 70 ~~~s~i~~~~~~~tFdnf~-~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~-aia~~l~~~------ 141 (268)
T PRK08116 70 KSNSLLDEKFRNSTFENFL-FDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA-CIANELIEK------ 141 (268)
T ss_pred HHhcCCCHHHHhcchhccc-CChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHH-HHHHHHHHc------
Confidence 34444554433 3355665 4666666655432 1 1224 9999999999998775 566666543
Q ss_pred CCCCCcEEEEEcccHHHHHHHHHH
Q 000324 546 FNHSNYKIVYVAPMKALVAEVVGN 569 (1665)
Q Consensus 546 ~~~~~~kil~iaP~raLa~q~~~~ 569 (1665)
+..++|+ +...|..++...
T Consensus 142 ----~~~v~~~-~~~~ll~~i~~~ 160 (268)
T PRK08116 142 ----GVPVIFV-NFPQLLNRIKST 160 (268)
T ss_pred ----CCeEEEE-EHHHHHHHHHHH
Confidence 2245555 445555544333
No 439
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=93.80 E-value=0.15 Score=68.68 Aligned_cols=109 Identities=24% Similarity=0.238 Sum_probs=74.7
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000324 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (1665)
..||+-|.+++.. ...+++|.|..|||||.+..--+.+.+.... ....+|++|+-|+..|.++.+++.+.
T Consensus 8 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~-------v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 8 DSLNDKQREAVAA---PLGNMLVLAGAGSGKTRVLVHRIAWLMQVEN-------ASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred HhcCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHcCC-------CChhHeEeeeccHHHHHHHHHHHHHH
Confidence 4699999999863 3467999999999999988776666664321 12447999999999999999999886
Q ss_pred hccCCcEEEEEECCCcccHhhhccccEEEeChhhH-HHHHhhcCC-CccccceeEEEEeccc
Q 000324 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKSGD-RTYTQLVKLLIIDEIH 633 (1665)
Q Consensus 574 ~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekl-d~l~r~~~~-~~~l~~v~liIiDEaH 633 (1665)
++.. ...+.|+|-..| ..++|.... ..+-. ..-|+|+.+
T Consensus 78 ~~~~-------------------~~~~~i~TfHs~~~~iLr~~~~~~g~~~--~f~i~d~~d 118 (721)
T PRK11773 78 LGTS-------------------QGGMWVGTFHGLAHRLLRAHWQDANLPQ--DFQILDSDD 118 (721)
T ss_pred hccC-------------------CCCCEEEcHHHHHHHHHHHHHHHhCCCC--CCeecCHHH
Confidence 5310 124778999986 344444211 11111 244677765
No 440
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.78 E-value=0.48 Score=57.78 Aligned_cols=121 Identities=13% Similarity=0.187 Sum_probs=63.2
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEc--ccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchh
Q 000324 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA--PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK 1434 (1665)
Q Consensus 1357 ~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~--PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~ 1434 (1665)
+..+++++|||+|||.....-+.+..... ... ++.++. +.+.-+.++...|.+. .|+.+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~-G~~--~V~lit~D~~R~ga~EqL~~~a~~----~gv~~~----------- 198 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRF-GAS--KVALLTTDSYRIGGHEQLRIFGKI----LGVPVH----------- 198 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc-CCC--eEEEEecccccccHHHHHHHHHHH----cCCceE-----------
Confidence 55799999999999998755444433331 112 343332 1222344445444433 233332
Q ss_pred ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCC
Q 000324 1435 LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1435 ~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n 1513 (1665)
.+-+++.+...+.+ +.+.++++||.+-+...+. .+...+..+.......-.++.+|||...
T Consensus 199 -------~~~~~~~l~~~l~~------l~~~DlVLIDTaG~~~~d~-----~l~e~La~L~~~~~~~~~lLVLsAts~~ 259 (374)
T PRK14722 199 -------AVKDGGDLQLALAE------LRNKHMVLIDTIGMSQRDR-----TVSDQIAMLHGADTPVQRLLLLNATSHG 259 (374)
T ss_pred -------ecCCcccHHHHHHH------hcCCCEEEEcCCCCCcccH-----HHHHHHHHHhccCCCCeEEEEecCccCh
Confidence 23344444433433 3456899999996443211 1333344333322334557888999754
No 441
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.78 E-value=1.4 Score=53.64 Aligned_cols=128 Identities=21% Similarity=0.240 Sum_probs=66.8
Q ss_pred CcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEE-c-ccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchhc
Q 000324 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI-A-PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKL 1435 (1665)
Q Consensus 1358 dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I-~-PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~ 1435 (1665)
..+.+++|||+|||.....-... +.. .+. ++.++ + |.|.-+.++...+. ...++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~-L~~--~Gk--kVglI~aDt~RiaAvEQLk~ya----e~lgipv------------- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQ-FHG--KKK--TVGFITTDHSRIGTVQQLQDYV----KTIGFEV------------- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHH-HHH--cCC--cEEEEecCCcchHHHHHHHHHh----hhcCCcE-------------
Confidence 45889999999999986554433 332 122 34433 3 34433333333333 2222222
Q ss_pred cCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCChH
Q 000324 1436 LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAK 1515 (1665)
Q Consensus 1436 l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~~ 1515 (1665)
+++.+|..+...+..... -.+.++|+||-+=+..... ..+..+..+.....+...++.+|||... +
T Consensus 300 -----~v~~d~~~L~~aL~~lk~---~~~~DvVLIDTaGRs~kd~-----~lm~EL~~~lk~~~PdevlLVLsATtk~-~ 365 (436)
T PRK11889 300 -----IAVRDEAAMTRALTYFKE---EARVDYILIDTAGKNYRAS-----ETVEEMIETMGQVEPDYICLTLSASMKS-K 365 (436)
T ss_pred -----EecCCHHHHHHHHHHHHh---ccCCCEEEEeCccccCcCH-----HHHHHHHHHHhhcCCCeEEEEECCccCh-H
Confidence 223467666655544221 1258999999886654221 1344455554443444446678998643 3
Q ss_pred HHHHHh
Q 000324 1516 DLGEWI 1521 (1665)
Q Consensus 1516 dl~~wl 1521 (1665)
++.+.+
T Consensus 366 d~~~i~ 371 (436)
T PRK11889 366 DMIEII 371 (436)
T ss_pred HHHHHH
Confidence 333333
No 442
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=93.76 E-value=0.21 Score=67.21 Aligned_cols=71 Identities=21% Similarity=0.153 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhc-CCCCeEEEEEcccHHHHHHHHHHHHHHhc
Q 000324 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~-~~~~~r~l~I~PtreLa~Q~~~~~~~~~~ 1415 (1665)
..+||-|.+|+.. ...+++|.|..|||||.+..--+...+.... +.. ++|+|+.|+..|.++.+++.+.++
T Consensus 3 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~--~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAA---PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPH--SIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcC---CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHH--HeEeeeccHHHHHHHHHHHHHHhc
Confidence 4699999999864 3456999999999999997776666665421 222 899999999999999998885544
No 443
>PRK11054 helD DNA helicase IV; Provisional
Probab=93.73 E-value=0.17 Score=66.87 Aligned_cols=81 Identities=21% Similarity=0.180 Sum_probs=60.3
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000324 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~ 1419 (1665)
..+|+-|.+|+- .+.++++|.|..|||||.+..--+...+..... .+-++++++.++..|..+.+++..+++. .+
T Consensus 195 ~~L~~~Q~~av~---~~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~-~~~~IL~ltft~~AA~em~eRL~~~lg~-~~ 269 (684)
T PRK11054 195 SPLNPSQARAVV---NGEDSLLVLAGAGSGKTSVLVARAGWLLARGQA-QPEQILLLAFGRQAAEEMDERIRERLGT-ED 269 (684)
T ss_pred CCCCHHHHHHHh---CCCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCC-CHHHeEEEeccHHHHHHHHHHHHHhcCC-CC
Confidence 479999999885 345679999999999999987766665554211 1128999999999999999999877762 24
Q ss_pred cEEEEE
Q 000324 1420 MRVVEL 1425 (1665)
Q Consensus 1420 i~v~~l 1425 (1665)
+.|..+
T Consensus 270 v~v~TF 275 (684)
T PRK11054 270 ITARTF 275 (684)
T ss_pred cEEEeH
Confidence 444443
No 444
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.70 E-value=0.59 Score=58.33 Aligned_cols=38 Identities=26% Similarity=0.464 Sum_probs=24.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEc
Q 000324 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA 557 (1665)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~ia 557 (1665)
..+++|+||+|+|||.++- .+++.+.... .+..++|+-
T Consensus 55 ~~~~lI~G~~GtGKT~l~~-~v~~~l~~~~--------~~~~~v~in 92 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVK-KVFEELEEIA--------VKVVYVYIN 92 (394)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHHhc--------CCcEEEEEE
Confidence 3579999999999998764 3344443321 135677763
No 445
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=93.70 E-value=0.29 Score=55.91 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=17.6
Q ss_pred CCCcEEEEccCCCchHHHHHH
Q 000324 510 SADNILLCAPTGAGKTNVAVL 530 (1665)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l 530 (1665)
...++++.||+|+|||..+..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 456899999999999987754
No 446
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.70 E-value=0.2 Score=59.66 Aligned_cols=62 Identities=31% Similarity=0.310 Sum_probs=47.4
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHH
Q 000324 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa 1403 (1665)
...+++-|.+.+..+...+.|+++++|||||||... -+++..+....+.. ++++|-.+.|+.
T Consensus 114 ~g~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~~~~~--ri~tiEd~~El~ 175 (299)
T TIGR02782 114 AGIMTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKNDPTD--RVVIIEDTRELQ 175 (299)
T ss_pred cCCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhccCCCc--eEEEECCchhhc
Confidence 345778888888888888889999999999999986 44555554422334 899998888873
No 447
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.69 E-value=0.29 Score=63.49 Aligned_cols=41 Identities=24% Similarity=0.490 Sum_probs=25.7
Q ss_pred cccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000324 620 YTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1665)
Q Consensus 620 ~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lS 667 (1665)
.....+++||||+|.|... .+ ..+++.++..+..+.+|+.+
T Consensus 116 ~~gk~KVIIIDEad~Ls~~---A~----NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 116 TAGKYKVYIIDEVHMLSKS---AF----NAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hhCCcEEEEEECccccCHH---HH----HHHHHHHHhCCCCcEEEEEe
Confidence 3456799999999988531 12 23444445555667776654
No 448
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=93.64 E-value=3.3 Score=61.41 Aligned_cols=217 Identities=12% Similarity=0.164 Sum_probs=112.0
Q ss_pred CCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000324 495 QLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (1665)
.|++-|.+++..++.+ +.-.+|.|+.|+|||.+. -+++..+.. .+.+++.++|+-.-+..+.+.....
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l-~~l~~~~~~----------~G~~V~~lAPTgrAA~~L~e~~g~~ 497 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIA-QLLLHLASE----------QGYEIQIITAGSLSAQELRQKIPRL 497 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHH-HHHHHHHHh----------cCCeEEEEeCCHHHHHHHHHHhcch
Confidence 6899999999998876 456789999999999754 344444433 2568999999988776665442211
Q ss_pred hccCCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHH
Q 000324 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ 653 (1665)
Q Consensus 574 ~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~ 653 (1665)
.. .+..+ ....... .-..|...| ..+. ..+..-++|||||+-++.. ..+..++...
T Consensus 498 A~----Ti~~~-------l~~l~~~-~~~~tv~~f---l~~~---~~l~~~~vlIVDEAsMl~~---~~~~~Ll~~a--- 553 (1960)
T TIGR02760 498 AS----TFITW-------VKNLFND-DQDHTVQGL---LDKS---SPFSNKDIFVVDEANKLSN---NELLKLIDKA--- 553 (1960)
T ss_pred hh----hHHHH-------HHhhccc-ccchhHHHh---hccc---CCCCCCCEEEEECCCCCCH---HHHHHHHHHH---
Confidence 00 00000 0000000 011122211 1111 2234568999999998852 2233333222
Q ss_pred HhhccCCeeEEEEccc--CCC--hHHHHHHHhccccCceEEecCCCcc-ccceEEEEeeecCchhHHHHHHHHHHHHHHH
Q 000324 654 IETTKEHIRLVGLSAT--LPN--YEDVALFLRVNLEKGLFYFDNSYRP-VPLSQQYIGIQVKKPLQRFQLMNDLCYEKVV 728 (1665)
Q Consensus 654 ~~~~~~~~riV~lSAT--l~n--~~dv~~~l~~~~~~~~~~f~~~~rp-v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 728 (1665)
...+.|+|++.=+ +|. +-.+-..|... ......+....|. .++ . +.......++..+... ..
T Consensus 554 ---~~~garvVlvGD~~QL~sV~aG~~f~~L~~~-gv~t~~l~~i~rq~~~v--~---i~~~~~~~r~~~ia~~----y~ 620 (1960)
T TIGR02760 554 ---EQHNSKLILLNDSAQRQGMSAGSAIDLLKEG-GVTTYAWVDTKQQKASV--E---ISEAVDKLRVDYIASA----WL 620 (1960)
T ss_pred ---hhcCCEEEEEcChhhcCccccchHHHHHHHC-CCcEEEeecccccCcce--e---eeccCchHHHHHHHHH----HH
Confidence 2456788877543 332 11122222221 1123333322211 111 1 1122222333333322 22
Q ss_pred HHh-CCCeEEEEecChhHHHHHHHHHHHHhhh
Q 000324 729 AVA-GKHQVLIFVHSRKETAKTARAIRDTALE 759 (1665)
Q Consensus 729 ~~~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~ 759 (1665)
... .+..++|+..+.++...+...++.....
T Consensus 621 ~L~~~r~~tliv~~t~~dr~~Ln~~iR~~L~~ 652 (1960)
T TIGR02760 621 DLTPDRQNSQVLATTHREQQDLTQIIRNALKQ 652 (1960)
T ss_pred hcccccCceEEEcCCcHHHHHHHHHHHHHHHH
Confidence 222 3446999999999999998888876543
No 449
>PRK04296 thymidine kinase; Provisional
Probab=93.62 E-value=0.17 Score=56.27 Aligned_cols=34 Identities=12% Similarity=0.133 Sum_probs=23.5
Q ss_pred EEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcc
Q 000324 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP 1398 (1665)
Q Consensus 1360 vlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~P 1398 (1665)
.++.+|+|+|||..+.-.+.+.... +. +++++-|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~---g~--~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEER---GM--KVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHc---CC--eEEEEec
Confidence 5789999999998775554444333 23 7787765
No 450
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=93.61 E-value=0.36 Score=61.43 Aligned_cols=19 Identities=37% Similarity=0.457 Sum_probs=16.6
Q ss_pred cEEEEccCCCchHHHHHHH
Q 000324 513 NILLCAPTGAGKTNVAVLT 531 (1665)
Q Consensus 513 nvlv~APTGsGKT~~a~l~ 531 (1665)
.+|++||.|+|||.++.+.
T Consensus 45 a~Lf~Gp~G~GKTT~Aril 63 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARII 63 (507)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 6999999999999988554
No 451
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.60 E-value=0.4 Score=62.46 Aligned_cols=39 Identities=21% Similarity=0.511 Sum_probs=25.1
Q ss_pred cceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000324 622 QLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1665)
Q Consensus 622 ~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lS 667 (1665)
...+++||||+|.|... .. ..+++.++..+.++++|+.+
T Consensus 118 gr~KVIIIDEah~LT~~---A~----NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNH---AF----NAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHH---HH----HHHHHHHHhcCCCeEEEEEE
Confidence 45799999999999642 12 23344455555667766654
No 452
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=93.58 E-value=0.11 Score=69.01 Aligned_cols=70 Identities=23% Similarity=0.196 Sum_probs=56.4
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhc-CCCCeEEEEEcccHHHHHHHHHHHHHHhc
Q 000324 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~-~~~~~r~l~I~PtreLa~Q~~~~~~~~~~ 1415 (1665)
.+||-|.+|+.. ...+++|.|..|||||.+...-+...+.... +.. ++|+|+.|+..|.++..++.+.++
T Consensus 2 ~Ln~~Q~~av~~---~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~--~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQAR--HIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHH--HeeeEechHHHHHHHHHHHHHHhC
Confidence 489999999864 3456999999999999998877777775421 222 799999999999999999986665
No 453
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.50 E-value=0.3 Score=61.06 Aligned_cols=28 Identities=32% Similarity=0.566 Sum_probs=19.9
Q ss_pred HHHHHcCCC---cEEEEccCCCchHHHHHHH
Q 000324 504 YKSALSSAD---NILLCAPTGAGKTNVAVLT 531 (1665)
Q Consensus 504 i~~~l~~~~---nvlv~APTGsGKT~~a~l~ 531 (1665)
+..++..+. .+|++||.|+|||.+|.+.
T Consensus 30 L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriL 60 (484)
T PRK14956 30 LQNALKSGKIGHAYIFFGPRGVGKTTIARIL 60 (484)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 344444443 3799999999999988543
No 454
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=93.49 E-value=0.36 Score=60.34 Aligned_cols=136 Identities=13% Similarity=0.211 Sum_probs=81.7
Q ss_pred EEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHH-HHHHHHHHHHHHhcCCCCcEEEEEeCCCccchhccC-
Q 000324 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEA-LAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLE- 1437 (1665)
Q Consensus 1360 vlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~Ptre-La~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~l~- 1437 (1665)
.++.+..|||||.+..+.++..+....+.. +++++.|+.. |-.-++..+...+... |+....-....+.......
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~--~~~~~r~~~~sl~~sv~~~l~~~i~~~-g~~~~~~~~~~~~~i~~~~~ 80 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINKKQQ--NILAARKVQNSIRDSVFKDIENLLSIE-GINYEFKKSKSSMEIKILNT 80 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcCCCc--EEEEEehhhhHHHHHHHHHHHHHHHHc-CChhheeecCCccEEEecCC
Confidence 678899999999999888888777742333 8999999988 6667777777555432 3321111111111222222
Q ss_pred CCcEEEECh-hhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCC
Q 000324 1438 KGQIIISTP-EKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1438 ~~~IIV~TP-e~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n 1513 (1665)
+..|++..- +.... .+....++++.+|||..+.. ..++.+..|++. +...+.+.+|.++..
T Consensus 81 g~~i~f~g~~d~~~~-------ik~~~~~~~~~idEa~~~~~---~~~~~l~~rlr~-----~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 81 GKKFIFKGLNDKPNK-------LKSGAGIAIIWFEEASQLTF---EDIKELIPRLRE-----TGGKKFIIFSSNPES 142 (396)
T ss_pred CeEEEeecccCChhH-------hhCcceeeeehhhhhhhcCH---HHHHHHHHHhhc-----cCCccEEEEEcCcCC
Confidence 334555553 22221 12234579999999999842 367777777543 122224677777665
No 455
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=93.49 E-value=0.2 Score=51.51 Aligned_cols=44 Identities=25% Similarity=0.380 Sum_probs=28.0
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHH
Q 000324 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (1665)
Q Consensus 1357 ~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q 1405 (1665)
+.++++.+|+|+|||..+...+. .+.. ... .++++.+.......
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~-~~~~--~~~--~~~~~~~~~~~~~~ 45 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAR-ELGP--PGG--GVIYIDGEDILEEV 45 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHh-ccCC--CCC--CEEEECCEEccccC
Confidence 34699999999999998755433 2222 111 47777777554443
No 456
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=93.47 E-value=0.19 Score=59.30 Aligned_cols=60 Identities=22% Similarity=0.315 Sum_probs=46.4
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHH
Q 000324 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (1665)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raL 562 (1665)
-.|..+++-|...+..+.....|+|+||.||||||+. |+.+...... .. ++|.+--+.+|
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-----LNal~~~i~~------~e-RvItiEDtaEL 212 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-----LNALSGFIDS------DE-RVITIEDTAEL 212 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-----HHHHHhcCCC------cc-cEEEEeehhhh
Confidence 3588999999999999999999999999999999963 3444433222 22 78888777766
No 457
>PRK06893 DNA replication initiation factor; Validated
Probab=93.39 E-value=0.31 Score=55.90 Aligned_cols=25 Identities=8% Similarity=0.178 Sum_probs=17.9
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHH
Q 000324 512 DNILLCAPTGAGKTNVAVLTILQQLA 537 (1665)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~ 537 (1665)
..++++||+|+|||..+. ++.+.+.
T Consensus 40 ~~l~l~G~~G~GKThL~~-ai~~~~~ 64 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLK-AVSNHYL 64 (229)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 447999999999997663 4444443
No 458
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.34 E-value=0.26 Score=60.33 Aligned_cols=27 Identities=33% Similarity=0.620 Sum_probs=19.9
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHh
Q 000324 511 ADNILLCAPTGAGKTNVAVLTILQQLAL 538 (1665)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~ 538 (1665)
..|+++-||||+|||.+.. .+++++..
T Consensus 42 p~n~~iyG~~GTGKT~~~~-~v~~~l~~ 68 (366)
T COG1474 42 PSNIIIYGPTGTGKTATVK-FVMEELEE 68 (366)
T ss_pred CccEEEECCCCCCHhHHHH-HHHHHHHh
Confidence 3479999999999998764 44455543
No 459
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.32 E-value=0.53 Score=60.57 Aligned_cols=40 Identities=23% Similarity=0.531 Sum_probs=25.8
Q ss_pred ccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000324 621 TQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1665)
Q Consensus 621 l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lS 667 (1665)
....+++||||+|.|... .. ..+++.++..+.++.+|+.|
T Consensus 122 ~gr~KViIIDEah~Ls~~---Aa----NALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNH---AF----NAMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred cCCceEEEEEChHhcCHH---HH----HHHHHhhccCCCCceEEEEe
Confidence 456799999999999632 12 23444455555667666654
No 460
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.30 E-value=0.41 Score=63.58 Aligned_cols=38 Identities=24% Similarity=0.498 Sum_probs=25.3
Q ss_pred cceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEE
Q 000324 622 QLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGL 666 (1665)
Q Consensus 622 ~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~l 666 (1665)
...+++||||||.|.. .... .+++.++..+..+++|+.
T Consensus 118 gk~KViIIDEAh~LT~---eAqN----ALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSR---SSFN----ALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCH---HHHH----HHHHHHhccCCCeEEEEE
Confidence 4578999999999952 1222 334555666667777775
No 461
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=93.29 E-value=0.15 Score=58.71 Aligned_cols=46 Identities=13% Similarity=0.253 Sum_probs=30.8
Q ss_pred cCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCC
Q 000324 1461 YVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1461 ~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n 1513 (1665)
.....+.||+||||.|..+. -..++.........+++++.+.-+.+
T Consensus 126 ~~~~fKiiIlDEcdsmtsda-------q~aLrr~mE~~s~~trFiLIcnylsr 171 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSDA-------QAALRRTMEDFSRTTRFILICNYLSR 171 (346)
T ss_pred CCCcceEEEEechhhhhHHH-------HHHHHHHHhccccceEEEEEcCChhh
Confidence 34567999999999996542 22333333445678899988876544
No 462
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=93.22 E-value=0.29 Score=50.27 Aligned_cols=46 Identities=13% Similarity=0.286 Sum_probs=27.2
Q ss_pred eeEEEEecccccccCC----chHHHHHHHHHHHHHhhccC---CeeEEEEccc
Q 000324 624 VKLLIIDEIHLLHDNR----GPVLESIVARTVRQIETTKE---HIRLVGLSAT 669 (1665)
Q Consensus 624 v~liIiDEaH~l~d~r----g~~le~iv~r~~~~~~~~~~---~~riV~lSAT 669 (1665)
-.+|+|||+|.+.... ...-..++..+...+..... ++.+|+.|.+
T Consensus 59 ~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp SEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred ceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 4799999999986532 33334444445444444333 3566666655
No 463
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=93.16 E-value=0.44 Score=55.43 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=38.9
Q ss_pred HcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHH
Q 000324 1354 YNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (1665)
Q Consensus 1354 l~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~ 1411 (1665)
+..+.|+++.+|+|+|||..+..... .+.. .+ .-++++++.+|+.++...+.
T Consensus 102 ~~~~~nl~l~G~~G~GKThLa~Ai~~-~l~~---~g--~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 102 FERGENLVLLGPPGVGKTHLAIAIGN-ELLK---AG--ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred hccCCcEEEECCCCCcHHHHHHHHHH-HHHH---cC--CeEEEEEHHHHHHHHHHHHh
Confidence 34677899999999999999854444 4444 23 56778899999888777665
No 464
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.14 E-value=0.36 Score=61.80 Aligned_cols=39 Identities=21% Similarity=0.480 Sum_probs=25.6
Q ss_pred cceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000324 622 QLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1665)
Q Consensus 622 ~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lS 667 (1665)
.+.+++||||||.|... .. ..+++.++..+..+.+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~---a~----naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGH---SF----NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHH---HH----HHHHHHHhccCCCeEEEEEE
Confidence 46799999999998631 22 23444455656677777654
No 465
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=93.12 E-value=0.58 Score=60.97 Aligned_cols=39 Identities=23% Similarity=0.471 Sum_probs=25.2
Q ss_pred ccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEE
Q 000324 621 TQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGL 666 (1665)
Q Consensus 621 l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~l 666 (1665)
....+++||||||.|.. .... .+++.++..+..+++|+.
T Consensus 117 ~g~~KV~IIDEah~Ls~---~a~N----ALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSR---HSFN----ALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred cCCCEEEEEechHhCCH---HHHH----HHHHHHHcCCCCeEEEEe
Confidence 35679999999999863 1222 344445555566676665
No 466
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.10 E-value=0.34 Score=59.65 Aligned_cols=41 Identities=22% Similarity=0.473 Sum_probs=25.2
Q ss_pred cccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000324 620 YTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1665)
Q Consensus 620 ~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lS 667 (1665)
.....+++||||+|.+.. ...+. +++.++..+..+++|+.+
T Consensus 116 ~~~~~kviIIDEa~~l~~---~a~na----LLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 116 SKSRFKVYLIDEVHMLSR---HSFNA----LLKTLEEPPQHIKFILAT 156 (363)
T ss_pred ccCCceEEEEEChhhcCH---HHHHH----HHHHHhcCCCCeEEEEEc
Confidence 345678999999999853 12232 334445555666666654
No 467
>PRK08727 hypothetical protein; Validated
Probab=93.08 E-value=1.1 Score=51.41 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=22.7
Q ss_pred CcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEc
Q 000324 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397 (1665)
Q Consensus 1358 dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~ 1397 (1665)
+.+++.+|+|+|||-.+.. +...+.+ .+. +++|+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a-~~~~~~~--~~~--~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALA-LCAAAEQ--AGR--SSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHH--cCC--cEEEEe
Confidence 3589999999999977653 3333333 122 677764
No 468
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=93.07 E-value=0.22 Score=64.40 Aligned_cols=175 Identities=14% Similarity=0.176 Sum_probs=103.5
Q ss_pred CCCCHHHHHHHHHHHcCC-CcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHH-HHHHHHhcCC
Q 000324 1340 KHFNPIQTQVFTVLYNTD-DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY-RDWEIKFGQG 1417 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll~~~-dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~-~~~~~~~~~~ 1417 (1665)
...+|+|.+...++-... ..|.++.++-+|||.+.+..+...+.. .+. .++++.||.+++.+.. .++.-.+...
T Consensus 15 ~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~-~P~---~~l~v~Pt~~~a~~~~~~rl~Pmi~~s 90 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQ-DPG---PMLYVQPTDDAAKDFSKERLDPMIRAS 90 (557)
T ss_pred CCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEe-CCC---CEEEEEEcHHHHHHHHHHHHHHHHHhC
Confidence 478899999999886532 468999999999999777666555555 233 6999999999999876 3343233221
Q ss_pred CCcE--EEE---EeCCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCC---CCchhHHHHHH
Q 000324 1418 LGMR--VVE---LTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG---QGGPVLEVIVS 1489 (1665)
Q Consensus 1418 ~~i~--v~~---l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~---~~g~~~e~~~s 1489 (1665)
..++ +.. -.++.+...+.+.++.|.++....-..+ .-..++++++||++.+.. ..|..++.+..
T Consensus 91 p~l~~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~S~~~l--------~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~ 162 (557)
T PF05876_consen 91 PVLRRKLSPSKSRDSGNTILYKRFPGGFLYLVGANSPSNL--------RSRPARYLLLDEVDRYPDDVGGEGDPVELAEK 162 (557)
T ss_pred HHHHHHhCchhhcccCCchhheecCCCEEEEEeCCCCccc--------ccCCcCEEEEechhhccccCccCCCHHHHHHH
Confidence 1111 110 1122222344455666666653322111 224689999999998843 34777788777
Q ss_pred HHHHHHhhcCCCCeEEEEcc-cCCChHHHHHHhcccCCcEEe
Q 000324 1490 RMRYIASQVENKIRIVALST-SLANAKDLGEWIGATSHGLFN 1530 (1665)
Q Consensus 1490 rl~~i~~~~~~~~riI~lSA-Tl~n~~dl~~wl~~~~~~~~~ 1530 (1665)
|.... .....++..|. |......+...........|.
T Consensus 163 R~~tf----~~~~K~~~~STPt~~~~~~I~~~~~~sdqr~~~ 200 (557)
T PF05876_consen 163 RTKTF----GSNRKILRISTPTIEGTSRIERLYEESDQRRYY 200 (557)
T ss_pred HHhhh----ccCcEEEEeCCCCCCCCCHHHHHHHhCCceEEE
Confidence 76543 23344444443 333334454444444433433
No 469
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.06 E-value=0.21 Score=59.85 Aligned_cols=60 Identities=23% Similarity=0.399 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHH
Q 000324 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raL 562 (1665)
..+++.|.+.+..++....|++|+||||||||+.. -+++..+.... ..-+++.+-...+|
T Consensus 127 g~~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~--------~~~rivtiEd~~El 186 (323)
T PRK13833 127 KIMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASA--------PEDRLVILEDTAEI 186 (323)
T ss_pred CCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCC--------CCceEEEecCCccc
Confidence 34788999999999999999999999999999754 45555553211 13377877777776
No 470
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.05 E-value=0.49 Score=55.72 Aligned_cols=55 Identities=22% Similarity=0.260 Sum_probs=34.6
Q ss_pred HcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000324 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (1665)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (1665)
+..++.+++.||||+|||..+...+.+.+... +.+++|+.- -.-..++..++...
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~----------g~~vl~iS~-E~~~~~~~~r~~~~ 81 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQH----------GVRVGTISL-EEPVVRTARRLLGQ 81 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhc----------CceEEEEEc-ccCHHHHHHHHHHH
Confidence 44567899999999999987766555544331 346787753 22344555555443
No 471
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.05 E-value=0.91 Score=55.02 Aligned_cols=131 Identities=20% Similarity=0.242 Sum_probs=66.6
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEc--ccHHHHHHHHHHHHHhhccCCcEEEEEECC
Q 000324 510 SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA--PMKALVAEVVGNLSNRLQMYDVKVRELSGD 587 (1665)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~ia--P~raLa~q~~~~~~~~~~~~gi~V~~ltGd 587 (1665)
....++++||||+|||+.+.-........ +.++.++. |.|.-|.++...+.+. +++.+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~-----------g~~V~lItaDtyR~gAveQLk~yae~---lgvpv~----- 265 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ-----------NRTVGFITTDTFRSGAVEQFQGYADK---LDVELI----- 265 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-----------CCeEEEEeCCccCccHHHHHHHHhhc---CCCCEE-----
Confidence 45678999999999997664444332222 12343332 4555555554444432 233221
Q ss_pred CcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000324 588 QTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1665)
Q Consensus 588 ~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lS 667 (1665)
.+.+|+.+....+... ..+..++|+||=+=..+. -+..+..+........+..-++.+|
T Consensus 266 -------------~~~dp~dL~~al~~l~---~~~~~D~VLIDTAGr~~~-----d~~~l~EL~~l~~~~~p~~~~LVLs 324 (407)
T PRK12726 266 -------------VATSPAELEEAVQYMT---YVNCVDHILIDTVGRNYL-----AEESVSEISAYTDVVHPDLTCFTFS 324 (407)
T ss_pred -------------ecCCHHHHHHHHHHHH---hcCCCCEEEEECCCCCcc-----CHHHHHHHHHHhhccCCceEEEECC
Confidence 2245665422222211 123468999998865431 2223333333333333444456778
Q ss_pred ccCCChHHHHHHHh
Q 000324 668 ATLPNYEDVALFLR 681 (1665)
Q Consensus 668 ATl~n~~dv~~~l~ 681 (1665)
||. ...++..++.
T Consensus 325 ag~-~~~d~~~i~~ 337 (407)
T PRK12726 325 SGM-KSADVMTILP 337 (407)
T ss_pred Ccc-cHHHHHHHHH
Confidence 875 4556666554
No 472
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.96 E-value=0.24 Score=59.06 Aligned_cols=60 Identities=28% Similarity=0.438 Sum_probs=45.1
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHH
Q 000324 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raL 562 (1665)
..+++-|.+.+..++..+.|++++||||||||+.. -+++..+.... ...+++++--..++
T Consensus 115 g~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~~--------~~~ri~tiEd~~El 174 (299)
T TIGR02782 115 GIMTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKND--------PTDRVVIIEDTREL 174 (299)
T ss_pred CCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhccC--------CCceEEEECCchhh
Confidence 35778888899999988899999999999999855 45555554310 13478888887776
No 473
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=92.92 E-value=0.2 Score=60.16 Aligned_cols=60 Identities=18% Similarity=0.341 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHH
Q 000324 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raL 562 (1665)
..+++.|.+.+..++..+.|++++||||||||..+ -+++..+.... ...++++|-.+.+|
T Consensus 131 g~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~aL~~~~~~~~--------~~~rivtIEd~~El 190 (319)
T PRK13894 131 GIMTAAQREAIIAAVRAHRNILVIGGTGSGKTTLV-NAIINEMVIQD--------PTERVFIIEDTGEI 190 (319)
T ss_pred CCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHhhhhcC--------CCceEEEEcCCCcc
Confidence 34778899999999999999999999999999643 45555442111 13478888877766
No 474
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=92.90 E-value=0.92 Score=57.33 Aligned_cols=48 Identities=21% Similarity=0.350 Sum_probs=32.2
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
.+++.||+|+|||... .++.+.+.... .+.+++|+.+ ..+..++...+
T Consensus 143 pl~i~G~~G~GKTHLl-~Ai~~~l~~~~--------~~~~v~yv~~-~~f~~~~~~~l 190 (450)
T PRK14087 143 PLFIYGESGMGKTHLL-KAAKNYIESNF--------SDLKVSYMSG-DEFARKAVDIL 190 (450)
T ss_pred ceEEECCCCCcHHHHH-HHHHHHHHHhC--------CCCeEEEEEH-HHHHHHHHHHH
Confidence 4899999999999655 56666655421 2457888766 45666555544
No 475
>PHA02533 17 large terminase protein; Provisional
Probab=92.88 E-value=1 Score=57.91 Aligned_cols=71 Identities=18% Similarity=0.211 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (1665)
.|+|+|...+..+....- .++..+=..|||.++...++...... .+..+++++|++.-|..+++.++...
T Consensus 59 ~L~p~Q~~i~~~~~~~R~-~ii~~aRq~GKStl~a~~al~~a~~~---------~~~~v~i~A~~~~QA~~vF~~ik~~i 128 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRF-NACNLSRQLGKTTVVAIFLLHYVCFN---------KDKNVGILAHKASMAAEVLDRTKQAI 128 (534)
T ss_pred CCcHHHHHHHHHHhcCeE-EEEEEcCcCChHHHHHHHHHHHHHhC---------CCCEEEEEeCCHHHHHHHHHHHHHHH
Confidence 588999999987654444 45777889999988765444433322 13489999999999999998887655
Q ss_pred c
Q 000324 575 Q 575 (1665)
Q Consensus 575 ~ 575 (1665)
.
T Consensus 129 e 129 (534)
T PHA02533 129 E 129 (534)
T ss_pred H
Confidence 4
No 476
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.84 E-value=1.7 Score=54.42 Aligned_cols=130 Identities=18% Similarity=0.241 Sum_probs=65.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEc--ccHHHHHHHHHHHHHhhccCCcEEEEEECCC
Q 000324 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA--PMKALVAEVVGNLSNRLQMYDVKVRELSGDQ 588 (1665)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~ia--P~raLa~q~~~~~~~~~~~~gi~V~~ltGd~ 588 (1665)
+..+++.||||+|||+.+...+....... .+.++.+|. |.|.-+.++...|.+.+ |+.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~---------~g~~V~li~~D~~r~~a~eqL~~~a~~~---~vp~~------ 282 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY---------GKKKVALITLDTYRIGAVEQLKTYAKIM---GIPVE------ 282 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc---------CCCeEEEEECCccHHHHHHHHHHHHHHh---CCceE------
Confidence 45789999999999976654333332111 122444432 45555556666665533 33221
Q ss_pred cccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEcc
Q 000324 589 TLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSA 668 (1665)
Q Consensus 589 ~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSA 668 (1665)
.+.+|+.+....+. +...++||||.+-....+ ...++. +..++.. ...+...++.+||
T Consensus 283 ------------~~~~~~~l~~~l~~------~~~~DlVlIDt~G~~~~d-~~~~~~-L~~ll~~--~~~~~~~~LVl~a 340 (424)
T PRK05703 283 ------------VVYDPKELAKALEQ------LRDCDVILIDTAGRSQRD-KRLIEE-LKALIEF--SGEPIDVYLVLSA 340 (424)
T ss_pred ------------ccCCHHhHHHHHHH------hCCCCEEEEeCCCCCCCC-HHHHHH-HHHHHhc--cCCCCeEEEEEEC
Confidence 12344444333322 224699999999654321 111111 2222220 1123345777999
Q ss_pred cCCChHHHHHHHh
Q 000324 669 TLPNYEDVALFLR 681 (1665)
Q Consensus 669 Tl~n~~dv~~~l~ 681 (1665)
|. ...++.....
T Consensus 341 ~~-~~~~l~~~~~ 352 (424)
T PRK05703 341 TT-KYEDLKDIYK 352 (424)
T ss_pred CC-CHHHHHHHHH
Confidence 96 4455555443
No 477
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=92.81 E-value=0.19 Score=65.10 Aligned_cols=164 Identities=12% Similarity=0.193 Sum_probs=95.7
Q ss_pred CCCCHHHHHHHHHHHcCC-CcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHH-HHHH
Q 000324 494 TQLNRVQSRVYKSALSSA-DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV-GNLS 571 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~-~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~-~~~~ 571 (1665)
...+|+|.+.++++-... +.|.++.++-+|||.+.+-.+...+.. ....++|+.||..+|.... .+|.
T Consensus 15 ~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~----------~P~~~l~v~Pt~~~a~~~~~~rl~ 84 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQ----------DPGPMLYVQPTDDAAKDFSKERLD 84 (557)
T ss_pred CCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEe----------CCCCEEEEEEcHHHHHHHHHHHHH
Confidence 367899999998754332 468999999999999665554444332 3456999999999999876 4555
Q ss_pred HhhccCC-cE--EEE---EECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc---CCchH
Q 000324 572 NRLQMYD-VK--VRE---LSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD---NRGPV 642 (1665)
Q Consensus 572 ~~~~~~g-i~--V~~---ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d---~rg~~ 642 (1665)
..+.... ++ +.. -.++.+.......+..+.++.-. +.....-..++++++||++.... ..|..
T Consensus 85 Pmi~~sp~l~~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~--------S~~~l~s~~~r~~~~DEvD~~p~~~~~eGdp 156 (557)
T PF05876_consen 85 PMIRASPVLRRKLSPSKSRDSGNTILYKRFPGGFLYLVGAN--------SPSNLRSRPARYLLLDEVDRYPDDVGGEGDP 156 (557)
T ss_pred HHHHhCHHHHHHhCchhhcccCCchhheecCCCEEEEEeCC--------CCcccccCCcCEEEEechhhccccCccCCCH
Confidence 5544221 11 111 11222233333334445554322 11111223478999999999843 57888
Q ss_pred HHHHHHHHHHHHhhccCCeeEEEE-cccCCChHHHHHH
Q 000324 643 LESIVARTVRQIETTKEHIRLVGL-SATLPNYEDVALF 679 (1665)
Q Consensus 643 le~iv~r~~~~~~~~~~~~riV~l-SATl~n~~dv~~~ 679 (1665)
++..-.|+.. .....+++.. |.|+.....+...
T Consensus 157 ~~la~~R~~t----f~~~~K~~~~STPt~~~~~~I~~~ 190 (557)
T PF05876_consen 157 VELAEKRTKT----FGSNRKILRISTPTIEGTSRIERL 190 (557)
T ss_pred HHHHHHHHhh----hccCcEEEEeCCCCCCCCCHHHHH
Confidence 8888887743 2233444443 4455432333333
No 478
>PRK14974 cell division protein FtsY; Provisional
Probab=92.81 E-value=1 Score=54.38 Aligned_cols=122 Identities=15% Similarity=0.157 Sum_probs=66.1
Q ss_pred cEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcc--cHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchhcc
Q 000324 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP--LEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLL 1436 (1665)
Q Consensus 1359 nvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~P--treLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~l 1436 (1665)
-+++.+|+|+|||.+..-.+ ..+.. .+. +++++.. .|.-+.++...+...+ |+.+.. +....
T Consensus 142 vi~~~G~~GvGKTTtiakLA-~~l~~--~g~--~V~li~~Dt~R~~a~eqL~~~a~~l----gv~v~~--~~~g~----- 205 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLA-YYLKK--NGF--SVVIAAGDTFRAGAIEQLEEHAERL----GVKVIK--HKYGA----- 205 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHH-HHHHH--cCC--eEEEecCCcCcHHHHHHHHHHHHHc----CCceec--ccCCC-----
Confidence 47789999999998754433 23333 222 5666653 2343333344444333 344321 11111
Q ss_pred CCCcEEEEChhh-HHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCC
Q 000324 1437 EKGQIIISTPEK-WDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1437 ~~~~IIV~TPe~-l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n 1513 (1665)
.|.. +...++.. .....++|+||.+.++.... ..+..|+.+.....+...++.++|+..+
T Consensus 206 --------dp~~v~~~ai~~~----~~~~~DvVLIDTaGr~~~~~-----~lm~eL~~i~~~~~pd~~iLVl~a~~g~ 266 (336)
T PRK14974 206 --------DPAAVAYDAIEHA----KARGIDVVLIDTAGRMHTDA-----NLMDELKKIVRVTKPDLVIFVGDALAGN 266 (336)
T ss_pred --------CHHHHHHHHHHHH----HhCCCCEEEEECCCccCCcH-----HHHHHHHHHHHhhCCceEEEeeccccch
Confidence 1221 11222211 12457899999999886432 2556666666656667778888998754
No 479
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=92.80 E-value=0.15 Score=47.54 Aligned_cols=36 Identities=14% Similarity=0.340 Sum_probs=33.8
Q ss_pred HHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1630 ATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1630 ~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
+..+..+..+||+++..+|..+++.|++|..+||||
T Consensus 4 ~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~ 39 (78)
T PF00271_consen 4 EKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIA 39 (78)
T ss_dssp HHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEE
T ss_pred HHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEe
Confidence 557888999999999999999999999999999997
No 480
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=92.74 E-value=1.8 Score=52.58 Aligned_cols=128 Identities=16% Similarity=0.223 Sum_probs=72.5
Q ss_pred CCcEEEECCCCChHHHH-HHHHHHHHHHhhcCCCCeEEEEEcc-cHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchh
Q 000324 1357 DDNVLVAAPTGSGKTIC-SEFAILRNHQKASETGVMRAVYIAP-LEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK 1434 (1665)
Q Consensus 1357 ~dnvlv~ApTGSGKTl~-a~l~il~~l~~~~~~~~~r~l~I~P-treLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~ 1434 (1665)
+..+.+++|||.|||.. |=||....... .... -++|-.- .|-=|.++.+ .+++.+|+.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~-~~~k--VaiITtDtYRIGA~EQLk----~Ya~im~vp~------------ 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK-KKKK--VAIITTDTYRIGAVEQLK----TYADIMGVPL------------ 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc-cCcc--eEEEEeccchhhHHHHHH----HHHHHhCCce------------
Confidence 55689999999999988 44444333122 1221 2333332 3333333333 3333333433
Q ss_pred ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh
Q 000324 1435 LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA 1514 (1665)
Q Consensus 1435 ~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~ 1514 (1665)
.++-+|.-|..-+.. +++.++|.||=+-+-..+ ...++.|..+.....+--..+.+|||. ..
T Consensus 264 ------~vv~~~~el~~ai~~------l~~~d~ILVDTaGrs~~D-----~~~i~el~~~~~~~~~i~~~Lvlsat~-K~ 325 (407)
T COG1419 264 ------EVVYSPKELAEAIEA------LRDCDVILVDTAGRSQYD-----KEKIEELKELIDVSHSIEVYLVLSATT-KY 325 (407)
T ss_pred ------EEecCHHHHHHHHHH------hhcCCEEEEeCCCCCccC-----HHHHHHHHHHHhccccceEEEEEecCc-ch
Confidence 445567766655543 556788988877543222 235667777766655566678899996 45
Q ss_pred HHHHHHh
Q 000324 1515 KDLGEWI 1521 (1665)
Q Consensus 1515 ~dl~~wl 1521 (1665)
+|+-+-+
T Consensus 326 ~dlkei~ 332 (407)
T COG1419 326 EDLKEII 332 (407)
T ss_pred HHHHHHH
Confidence 5555544
No 481
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=92.72 E-value=0.67 Score=53.45 Aligned_cols=52 Identities=29% Similarity=0.450 Sum_probs=36.9
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhc
Q 000324 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (1665)
Q Consensus 1357 ~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~ 1415 (1665)
+..++|.+|+|+|||+.+.-.+...+.+ +. +++|++ +.+-..++.+.+. .|+
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~---ge--~~lyvs-~ee~~~~i~~~~~-~~g 72 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQM---GE--PGIYVA-LEEHPVQVRRNMA-QFG 72 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc---CC--cEEEEE-eeCCHHHHHHHHH-HhC
Confidence 4568999999999999887666665543 33 788887 5566666666655 443
No 482
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=92.67 E-value=1.1 Score=51.16 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=17.2
Q ss_pred CCCcEEEECCCCChHHHHHHH
Q 000324 1356 TDDNVLVAAPTGSGKTICSEF 1376 (1665)
Q Consensus 1356 ~~dnvlv~ApTGSGKTl~a~l 1376 (1665)
...++++.+|+|+|||..+..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~a 61 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQA 61 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 345799999999999987643
No 483
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=92.65 E-value=0.28 Score=66.21 Aligned_cols=92 Identities=22% Similarity=0.248 Sum_probs=68.5
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000324 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (1665)
..||+-|.+++.. ...+++|.|..|||||.+..--|.+.+.... ...-+|++++-|+..|.++.+++.++
T Consensus 3 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~-------i~P~~IL~lTFT~kAA~em~~Rl~~~ 72 (726)
T TIGR01073 3 AHLNPEQREAVKT---TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKN-------VAPWNILAITFTNKAAREMKERVEKL 72 (726)
T ss_pred cccCHHHHHHHhC---CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCC-------CCHHHeeeeeccHHHHHHHHHHHHHH
Confidence 4689999999863 3467999999999999988777777665421 12347999999999999999999876
Q ss_pred hccCCcEEEEEECCCcccHhhhccccEEEeChhhH-HHHHhh
Q 000324 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRK 614 (1665)
Q Consensus 574 ~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekl-d~l~r~ 614 (1665)
++. ....+.|+|-..| ..++|.
T Consensus 73 ~~~-------------------~~~~~~i~TFHs~~~~iLr~ 95 (726)
T TIGR01073 73 LGP-------------------VAEDIWISTFHSMCVRILRR 95 (726)
T ss_pred hcc-------------------ccCCcEEEcHHHHHHHHHHH
Confidence 431 0135789999886 344444
No 484
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=92.64 E-value=1.2 Score=57.01 Aligned_cols=140 Identities=20% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccC--C
Q 000324 501 SRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMY--D 578 (1665)
Q Consensus 501 ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~--g 578 (1665)
+...-..+..+- .+++.|==.|||.+...-|.-.+... .+.+|+|++|.+..++.+++++..++... +
T Consensus 245 s~~~~~~fkqk~-tVflVPRR~GKTwivv~iI~~ll~s~---------~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~ 314 (738)
T PHA03368 245 SDAAVRHFRQRA-TVFLVPRRHGKTWFLVPLIALALATF---------RGIKIGYTAHIRKATEPVFEEIGARLRQWFGA 314 (738)
T ss_pred cHHHHHHhhccc-eEEEecccCCchhhHHHHHHHHHHhC---------CCCEEEEEcCcHHHHHHHHHHHHHHHhhhcch
Q ss_pred cEEEEEECCCcc--cHhhhccccEEEe-ChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHh
Q 000324 579 VKVRELSGDQTL--TRQQIEETQIIVT-TPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIE 655 (1665)
Q Consensus 579 i~V~~ltGd~~~--~~~~~~~~~IiV~-TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~ 655 (1665)
-.+....| ..+ .-..-....|.++ + +......=+.++++|||||+.+. ...+..++--+
T Consensus 315 ~~v~~vkG-e~I~i~f~nG~kstI~FaSa---------rntNsiRGqtfDLLIVDEAqFIk---~~al~~ilp~l----- 376 (738)
T PHA03368 315 SRVDHVKG-ETISFSFPDGSRSTIVFASS---------HNTNGIRGQDFNLLFVDEANFIR---PDAVQTIMGFL----- 376 (738)
T ss_pred hheeeecC-cEEEEEecCCCccEEEEEec---------cCCCCccCCcccEEEEechhhCC---HHHHHHHHHHH-----
Q ss_pred hccCCeeEEEEccc
Q 000324 656 TTKEHIRLVGLSAT 669 (1665)
Q Consensus 656 ~~~~~~riV~lSAT 669 (1665)
...+.++|.+|-|
T Consensus 377 -~~~n~k~I~ISS~ 389 (738)
T PHA03368 377 -NQTNCKIIFVSST 389 (738)
T ss_pred -hccCccEEEEecC
No 485
>PRK08084 DNA replication initiation factor; Provisional
Probab=92.57 E-value=1.2 Score=51.18 Aligned_cols=34 Identities=24% Similarity=0.288 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHc--CCCcEEEEccCCCchHHHHH
Q 000324 496 LNRVQSRVYKSALS--SADNILLCAPTGAGKTNVAV 529 (1665)
Q Consensus 496 l~~iQ~~~i~~~l~--~~~nvlv~APTGsGKT~~a~ 529 (1665)
.|.....++..+.. +..+++++||+|+|||..+.
T Consensus 28 ~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 28 DNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLH 63 (235)
T ss_pred ccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHH
Confidence 35555555554432 23579999999999998664
No 486
>PRK05642 DNA replication initiation factor; Validated
Probab=92.53 E-value=1.5 Score=50.51 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=23.3
Q ss_pred CcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEc
Q 000324 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397 (1665)
Q Consensus 1358 dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~ 1397 (1665)
.++++++|+|+|||-.+. ++...+.. .+. +++|+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~-a~~~~~~~--~~~--~v~y~~ 80 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQ-AACLRFEQ--RGE--PAVYLP 80 (234)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHh--CCC--cEEEee
Confidence 468899999999998743 44444443 122 677765
No 487
>PRK06893 DNA replication initiation factor; Validated
Probab=92.48 E-value=1.3 Score=50.93 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=27.2
Q ss_pred CCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCC
Q 000324 1462 VQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1462 l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n 1513 (1665)
+.+.+++|+||+|.+..... .-+.+..-++.+. ..+.+++.+|++.++
T Consensus 89 ~~~~dlLilDDi~~~~~~~~-~~~~l~~l~n~~~---~~~~~illits~~~p 136 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEE-WELAIFDLFNRIK---EQGKTLLLISADCSP 136 (229)
T ss_pred cccCCEEEEeChhhhcCChH-HHHHHHHHHHHHH---HcCCcEEEEeCCCCh
Confidence 34678999999998864321 1122333333332 234566677776544
No 488
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=92.45 E-value=0.25 Score=66.49 Aligned_cols=83 Identities=24% Similarity=0.166 Sum_probs=61.3
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhc-CCCCeEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000324 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~-~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~ 1417 (1665)
+..+||-|.+|+.. ...+++|.|..|||||.+..--+...+.... +.. ++|+|+-|+..|.++.+++.+.++..
T Consensus 7 l~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~--~IL~lTFT~kAA~Em~~Rl~~~~~~~ 81 (721)
T PRK11773 7 LDSLNDKQREAVAA---PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPY--SIMAVTFTNKAAAEMRHRIEQLLGTS 81 (721)
T ss_pred HHhcCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChh--HeEeeeccHHHHHHHHHHHHHHhccC
Confidence 34699999999864 3457999999999999998777766665321 222 89999999999999999998666532
Q ss_pred -CCcEEEEEe
Q 000324 1418 -LGMRVVELT 1426 (1665)
Q Consensus 1418 -~~i~v~~l~ 1426 (1665)
.++.|..++
T Consensus 82 ~~~~~i~TfH 91 (721)
T PRK11773 82 QGGMWVGTFH 91 (721)
T ss_pred CCCCEEEcHH
Confidence 234444443
No 489
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=92.44 E-value=0.76 Score=55.54 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHcCCC---cEEEEccCCCchHHHHHHH
Q 000324 496 LNRVQSRVYKSALSSAD---NILLCAPTGAGKTNVAVLT 531 (1665)
Q Consensus 496 l~~iQ~~~i~~~l~~~~---nvlv~APTGsGKT~~a~l~ 531 (1665)
+.|+|...+..++..+. .+|++||.|.|||..+...
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~ 42 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERL 42 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHH
Confidence 46888888888876643 5899999999999877543
No 490
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.42 E-value=0.99 Score=52.14 Aligned_cols=137 Identities=23% Similarity=0.301 Sum_probs=70.9
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEc---ccHHHHHHHHHHHHHHhcCCCCcEEE-EEeCCCcc-
Q 000324 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA---PLEALAKERYRDWEIKFGQGLGMRVV-ELTGETAM- 1431 (1665)
Q Consensus 1357 ~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~---PtreLa~Q~~~~~~~~~~~~~~i~v~-~l~G~~~~- 1431 (1665)
++-++|+|++|+|||..+.--+.+...+. +. +++|+. |..+++..... ... ++... ...|....
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~--g~--~vly~s~E~~~~~~~~r~~~----~~~---~~~~~~~~~~~~~~~ 81 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQ--GK--PVLFFSLEMSKEQLLQRLLA----SES---GISLSKLRTGSLSDE 81 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhC--CC--ceEEEeCCCCHHHHHHHHHH----Hhc---CCCHHHHhcCCCCHH
Confidence 45689999999999988765555555441 22 677776 34444443322 111 11110 01111111
Q ss_pred c-------hhccCCCcEEE-----EChhhHHHHHHhhhccccCCCccEEEeecccccCCCC-----chhHHHHHHHHHHH
Q 000324 1432 D-------LKLLEKGQIII-----STPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-----GPVLEVIVSRMRYI 1494 (1665)
Q Consensus 1432 ~-------~~~l~~~~IIV-----~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~-----g~~~e~~~srl~~i 1494 (1665)
. ...+....+.| .|++.+...++..... .++++||||=++.+.... ...+..++.+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~---~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~l 158 (242)
T cd00984 82 DWERLAEAIGELKELPIYIDDSSSLTVSDIRSRARRLKKE---HGLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLL 158 (242)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHh---cCCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 0 01112223443 2445555444443221 278999999999774321 22344566677766
Q ss_pred HhhcCCCCeEEEEcc
Q 000324 1495 ASQVENKIRIVALST 1509 (1665)
Q Consensus 1495 ~~~~~~~~riI~lSA 1509 (1665)
...+ ++.++++|-
T Consensus 159 a~~~--~~~ii~~~q 171 (242)
T cd00984 159 AKEL--NVPVIALSQ 171 (242)
T ss_pred HHHh--CCeEEEecc
Confidence 5543 566666664
No 491
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=92.42 E-value=0.73 Score=54.67 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=15.9
Q ss_pred cEEEEccCCCchHHHHHH
Q 000324 513 NILLCAPTGAGKTNVAVL 530 (1665)
Q Consensus 513 nvlv~APTGsGKT~~a~l 530 (1665)
++++.||+|+|||.+|..
T Consensus 60 ~vll~G~pGTGKT~lA~~ 77 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALR 77 (284)
T ss_pred eEEEEcCCCCCHHHHHHH
Confidence 699999999999998843
No 492
>PRK06921 hypothetical protein; Provisional
Probab=92.42 E-value=0.76 Score=53.88 Aligned_cols=45 Identities=16% Similarity=0.168 Sum_probs=28.6
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHH
Q 000324 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER 1406 (1665)
Q Consensus 1357 ~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~ 1406 (1665)
..++++.+|+|+|||..+. +|...+... .+. .++|+. ..++..+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~-aia~~l~~~-~g~--~v~y~~-~~~l~~~l 161 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLT-AAANELMRK-KGV--PVLYFP-FVEGFGDL 161 (266)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHhhh-cCc--eEEEEE-HHHHHHHH
Confidence 5679999999999998773 555555541 122 566654 44555443
No 493
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=92.41 E-value=0.42 Score=61.16 Aligned_cols=72 Identities=14% Similarity=0.097 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHcC----C----CcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhc
Q 000324 1344 PIQTQVFTVLYNT----D----DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (1665)
Q Consensus 1344 ~iQ~qa~~~ll~~----~----dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~ 1415 (1665)
|+|.-.+..++.- + ..+++..|=|.|||.......+..+.-.+ ..+..+++.+++++-+..+++.++..+.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g-~~~~~i~~~A~~~~QA~~~f~~~~~~i~ 79 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDG-EPGAEIYCAANTRDQAKIVFDEAKKMIE 79 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCC-ccCceEEEEeCCHHHHHHHHHHHHHHHH
Confidence 6788777777731 1 24888899999999987666665554422 2233899999999999999999986554
Q ss_pred C
Q 000324 1416 Q 1416 (1665)
Q Consensus 1416 ~ 1416 (1665)
.
T Consensus 80 ~ 80 (477)
T PF03354_consen 80 A 80 (477)
T ss_pred h
Confidence 3
No 494
>PRK08084 DNA replication initiation factor; Provisional
Probab=92.38 E-value=1.1 Score=51.64 Aligned_cols=51 Identities=8% Similarity=0.064 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHc--CCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcc
Q 000324 1343 NPIQTQVFTVLYN--TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP 1398 (1665)
Q Consensus 1343 ~~iQ~qa~~~ll~--~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~P 1398 (1665)
|.....++..+.. +..++++++|+|+|||-.+.. +...+.. .+. +++|+.-
T Consensus 29 n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a-~~~~~~~--~~~--~v~y~~~ 81 (235)
T PRK08084 29 NDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHA-ACAELSQ--RGR--AVGYVPL 81 (235)
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHH-HHHHHHh--CCC--eEEEEEH
Confidence 3334444444332 235799999999999987653 3333333 122 6666643
No 495
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=92.36 E-value=0.54 Score=56.34 Aligned_cols=27 Identities=33% Similarity=0.648 Sum_probs=20.5
Q ss_pred HHHHHcCC--CcEEEEccCCCchHHHHHH
Q 000324 504 YKSALSSA--DNILLCAPTGAGKTNVAVL 530 (1665)
Q Consensus 504 i~~~l~~~--~nvlv~APTGsGKT~~a~l 530 (1665)
+..++.++ .++|+.||.|+|||.+|.+
T Consensus 39 lrr~v~~~~l~SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 39 LRRAVEAGHLHSMILWGPPGTGKTTLARL 67 (436)
T ss_pred HHHHHhcCCCceeEEECCCCCCHHHHHHH
Confidence 44455543 4799999999999998854
No 496
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=92.36 E-value=0.77 Score=52.95 Aligned_cols=51 Identities=22% Similarity=0.295 Sum_probs=36.3
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000324 510 SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1665)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (1665)
.+..++|.||+|+|||..++..+...+.. +-+++|++- -+-..++.+++..
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~-----------ge~~lyvs~-ee~~~~i~~~~~~ 70 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM-----------GEPGIYVAL-EEHPVQVRRNMAQ 70 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-----------CCcEEEEEe-eCCHHHHHHHHHH
Confidence 35679999999999999888777766633 336888873 4455566665543
No 497
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=92.35 E-value=0.35 Score=63.31 Aligned_cols=125 Identities=21% Similarity=0.265 Sum_probs=77.7
Q ss_pred CCCHHHHHHHH---HHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000324 1341 HFNPIQTQVFT---VLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (1665)
Q Consensus 1341 ~~~~iQ~qa~~---~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~ 1417 (1665)
.+.++|..-+. .+|+++=|-|+.-.+|-|||+.-.-- +.++.......| --+||||+--|.+ |...|..-
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsL-itYLmE~K~~~G-P~LvivPlstL~N-----W~~Ef~kW 466 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISL-ITYLMEHKQMQG-PFLIIVPLSTLVN-----WSSEFPKW 466 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHH-HHHHHHHcccCC-CeEEeccccccCC-----chhhcccc
Confidence 66777776554 46778888999999999999986443 344444333333 3688999977765 44344322
Q ss_pred -CCcEEEEEeCCCccch----h-ccCCCcEEEEChhhHHHHHHhhhccccCCC--ccEEEeecccccCC
Q 000324 1418 -LGMRVVELTGETAMDL----K-LLEKGQIIISTPEKWDALSRRWKQRKYVQQ--VSLFIIDELHLIGG 1478 (1665)
Q Consensus 1418 -~~i~v~~l~G~~~~~~----~-~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~--v~llViDEaH~l~~ 1478 (1665)
..+..+.+.|...... + ...+.+|+++|-+-+.. .+..++. ..++||||-|+|-.
T Consensus 467 aPSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik------dk~lLsKI~W~yMIIDEGHRmKN 529 (1157)
T KOG0386|consen 467 APSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK------DKALLSKISWKYMIIDEGHRMKN 529 (1157)
T ss_pred ccceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC------CHHHHhccCCcceeecccccccc
Confidence 2344555555432221 1 22456999999876532 1222333 46899999999964
No 498
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.30 E-value=0.66 Score=59.98 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=22.8
Q ss_pred HHHHHHHHcCC---CcEEEEccCCCchHHHHHHHH
Q 000324 501 SRVYKSALSSA---DNILLCAPTGAGKTNVAVLTI 532 (1665)
Q Consensus 501 ~~~i~~~l~~~---~nvlv~APTGsGKT~~a~l~i 532 (1665)
.+.+..++.++ ..+|+++|.|+|||.++.+.+
T Consensus 25 ~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 25 KAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred HHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHH
Confidence 34455555553 368899999999999886544
No 499
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=92.28 E-value=0.89 Score=57.79 Aligned_cols=47 Identities=17% Similarity=0.224 Sum_probs=29.5
Q ss_pred CcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHH
Q 000324 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYR 1408 (1665)
Q Consensus 1358 dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~ 1408 (1665)
..+++.+|+|+|||..+.. +...+....+.. +++|+ +..++..+...
T Consensus 149 ~~l~l~G~~G~GKThL~~a-i~~~~~~~~~~~--~v~yi-~~~~~~~~~~~ 195 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHA-IGNYILEKNPNA--KVVYV-TSEKFTNDFVN 195 (450)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHhCCCC--eEEEE-EHHHHHHHHHH
Confidence 3589999999999988744 444444422233 67776 44555554433
No 500
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.26 E-value=2.3 Score=53.24 Aligned_cols=120 Identities=16% Similarity=0.197 Sum_probs=61.4
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHHH-HhhcCCCCeEEEEEc--ccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccch
Q 000324 1357 DDNVLVAAPTGSGKTICSEFAILRNH-QKASETGVMRAVYIA--PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL 1433 (1665)
Q Consensus 1357 ~dnvlv~ApTGSGKTl~a~l~il~~l-~~~~~~~~~r~l~I~--PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~ 1433 (1665)
+..+++.+|||+|||.+..--+.... .. .+. ++.+|. |.+.-+.++...|...+ ++.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~--~g~--~V~li~~D~~r~~a~eqL~~~a~~~----~vp~----------- 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY--GKK--KVALITLDTYRIGAVEQLKTYAKIM----GIPV----------- 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc--CCC--eEEEEECCccHHHHHHHHHHHHHHh----CCce-----------
Confidence 34688999999999987653333222 22 122 444433 33443444444444322 2222
Q ss_pred hccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHh-hcCCCCeEEEEcccCC
Q 000324 1434 KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIAS-QVENKIRIVALSTSLA 1512 (1665)
Q Consensus 1434 ~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~-~~~~~~riI~lSATl~ 1512 (1665)
.++.+|..+...++. +.+.++||||.+-+...+. . .+..+..+.. .......++.+|||..
T Consensus 282 -------~~~~~~~~l~~~l~~------~~~~DlVlIDt~G~~~~d~-~----~~~~L~~ll~~~~~~~~~~LVl~a~~~ 343 (424)
T PRK05703 282 -------EVVYDPKELAKALEQ------LRDCDVILIDTAGRSQRDK-R----LIEELKALIEFSGEPIDVYLVLSATTK 343 (424)
T ss_pred -------EccCCHHhHHHHHHH------hCCCCEEEEeCCCCCCCCH-H----HHHHHHHHHhccCCCCeEEEEEECCCC
Confidence 122345555444443 3467999999987643221 1 2333333333 1122344778899864
Q ss_pred C
Q 000324 1513 N 1513 (1665)
Q Consensus 1513 n 1513 (1665)
.
T Consensus 344 ~ 344 (424)
T PRK05703 344 Y 344 (424)
T ss_pred H
Confidence 3
Done!