Query 000324
Match_columns 1665
No_of_seqs 816 out of 6043
Neff 7.9
Searched_HMMs 29240
Date Tue Mar 26 16:48:12 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000324.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_103-106//hhsearch_pdb/000324hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f92_B U5 small nuclear ribonu 1.0 1 1 2099.3 121.6 1243 418-1665 2-1245(1724)
2 4f92_B U5 small nuclear ribonu 1.0 1 1 1155.1 85.5 819 460-1301 888-1723(1724)
3 2p6r_A Afuhel308 helicase; pro 1.0 1 1 785.1 49.6 653 482-1204 10-692 (702)
4 2va8_A SSO2462, SKI2-type heli 1.0 1 1 778.7 57.1 658 481-1200 14-715 (715)
5 2zj8_A DNA helicase, putative 1.0 1 1 775.0 57.9 657 481-1198 7-704 (720)
6 2q0z_X Protein Pro2281; SEC63, 1.0 1 1 498.9 29.0 308 991-1304 10-330 (339)
7 3im1_A Protein SNU246, PRE-mRN 1.0 1 1 490.6 26.4 307 990-1302 5-326 (328)
8 3l9o_A ATP-dependent RNA helic 1.0 1 1 432.9 34.8 396 492-918 181-628 (1108)
9 2xgj_A ATP-dependent RNA helic 1.0 1 1 421.6 40.3 386 492-917 84-529 (1010)
10 3i5x_A ATP-dependent RNA helic 1.0 1 1 404.7 38.8 370 475-899 72-459 (563)
No 1
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=1.00 E-value=1 Score=2099.31 Aligned_cols=1243 Identities=65% Similarity=1.091 Sum_probs=1200.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf 77652013444221357743454302189997434688705770699999999998875336899933585218999999
Q 000324 418 LGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLN 497 (1665)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~~~~~~~~eei~ip~~~~~~~~~~~~l~~i~~lp~~~~~~f~g~~~l~ 497 (1665)
.+|++++||+++.|+||+|+|+|+++.+|+|+.+...++|||+++|++.+.|....+.++++++||+|++.+|+||++||
T Consensus 2 ~~p~~~~dl~~l~~~~~~~~~~~~~~~lp~~s~~~~~~~~eei~vp~~~~~~~~~~~~l~~i~~Lp~~~~~~f~g~~~ln 81 (1724)
T 4f92_B 2 LAPRQVLDLEDLVFTQGSHFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLN 81 (1724)
T ss_dssp CCCCCCCCHHHHSCTTGGGCCCCCCCCCCSCCCEEECSSEEEEEECCCCCCCCCSSCCCCBTTTSCGGGSTTCTTCSBCC
T ss_pred CCCCCEECHHHHCCCCCCCCCCCCCEECCCCCEECCCCCCCEEECCCCCCCCCCCCCCCCCHHHCCHHHHHHCCCCCCCC
T ss_conf 99610234766345332210247843089997630368961585488778999876776525765998887447899999
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999988389909998248986099999999999984289999998997099999354878999999998731038
Q 000324 498 RVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMY 577 (1665)
Q Consensus 498 ~iQ~~~i~~~l~~~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP~kaLa~q~~~~~~~~~~~~ 577 (1665)
++|+++++.++++++|+++|||||||||++|+++|++.+..+....+.....++++||++|+||||+|+++.|.++++.+
T Consensus 82 ~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~~ 161 (1724)
T 4f92_B 82 RIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATY 161 (1724)
T ss_dssp HHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999997589939999688146999999999999986234344445799889998997999999999999777547
Q ss_pred CCEEEEEECCCCCCHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 94999997888636764403649992723599998314998644540089992531001688048999999999998511
Q 000324 578 DVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETT 657 (1665)
Q Consensus 578 gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEvH~l~d~rg~~le~iv~r~~~~~~~~ 657 (1665)
|++|+.++||.+.+++....++|+|||||+||.++|++.+..+++.+++|||||+|+++|+||+++|.+++|+++.....
T Consensus 162 gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~~~~~ 241 (1724)
T 4f92_B 162 GITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMT 241 (1724)
T ss_dssp TCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCCCCCCCCCEEEECHHHHHHHHCCCCCCHHHCCCCEEEEECCHHCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 98899997998887143589999998879999997588530445475889995554429956799999999999999737
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 68700999933378968899997002468569834997542322899852037635788987799999999983898299
Q 000324 658 KEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVL 737 (1665)
Q Consensus 658 ~~~~riv~lSATl~n~~dva~~l~~~~~~~~~~f~~~~rp~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vL 737 (1665)
+.++|+||||||+||+++++.||++.+..++++|+.++||+|+.++++++..+....++..++..+++.+.+...++++|
T Consensus 242 ~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~L 321 (1724)
T 4f92_B 242 QEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVL 321 (1724)
T ss_dssp TCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEE
T ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 99980999954569999999986788888869979997667317999656875414566778899999999975699689
Q ss_pred EEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCCCEEEECCCCCHHHHHHHHHHHH
Q ss_conf 99658267999999999974101322445556801399998521013641034210785799368999788999999970
Q 000324 738 IFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFG 817 (1665)
Q Consensus 738 IFv~sr~~~~~la~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagl~~~dR~~v~~~F~ 817 (1665)
|||+||+.|+.+|..|.+.....+....+........+.+........+..|++++++||++|||||++.+|..+|+.|+
T Consensus 322 VF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~ 401 (1724)
T 4f92_B 322 VFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFA 401 (1724)
T ss_dssp EECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHH
T ss_conf 98788899999999999987645521221333305788877664024448899986457788759999999999999987
Q ss_pred CCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHHH
Q ss_conf 99977687430000245898628999635013799997543899889843123689999982289999088738999984
Q 000324 818 DGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSL 897 (1665)
Q Consensus 818 ~g~i~VLVaT~tla~GVnlP~~~vVI~~t~~yd~~~g~~~~ls~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~l 897 (1665)
+|.++|||||+|+|||||+|+++|||++++.|++..|++.++|+.+|+||+|||||+|+|..|++++++++.+..+|.++
T Consensus 402 ~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~l 481 (1724)
T 4f92_B 402 DKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSL 481 (1724)
T ss_dssp TTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHH
T ss_pred CCCCEEEEECCHHHHHCCCCCCEEEEECCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHH
T ss_conf 79974999842667138888706998288770476787563899999876401268888876479998350259999999
Q ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 20887632000475699999998825524958999999765889876119865589921013501389998899999999
Q 000324 898 MNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAAT 977 (1665)
Q Consensus 898 l~~~~piES~l~~~l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~d~~l~~~~~~li~~a~~ 977 (1665)
++.+.||||+|...+.|++|+||++|++.+.+++++|+++||+|+||.+||.+|++..+....|+.+.+++.++|++++.
T Consensus 482 l~~~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~~~~~~~i~~~~~ 561 (1724)
T 4f92_B 482 LNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAAL 561 (1724)
T ss_dssp TTTCSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HCCCCCCHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 74998510203310788999999870247899999999643788775327465436710012363789999999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 98676874323578942259389999982589888999997419999989899985079347879678148999999850
Q 000324 978 ILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLD 1057 (1665)
Q Consensus 978 ~L~~~~~i~~~~~~~~~~~t~lG~i~s~~yi~~~T~~~~~~~l~~~~~~~~ll~ils~s~EF~~i~vR~~E~~eL~~L~~ 1057 (1665)
.|++++||.+|+++|.+.+|++||+||+|||++.||..|+..+++.+++.++|+++|.|.||+++++|++|+.+|.+|.+
T Consensus 562 ~L~~~~li~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~i~~R~~E~~~l~~l~~ 641 (1724)
T 4f92_B 562 MLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLE 641 (1724)
T ss_dssp HHHHTTSEEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTTCCCCGGGHHHHHHHHH
T ss_pred HHHHCCCEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHH
T ss_conf 99887990140677864344487999983689999999986358889999999997577521667707789999999982
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 39998889898927999999999874988899830301999999299999999999997299999999999999987256
Q 000324 1058 RVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRM 1137 (1665)
Q Consensus 1058 ~~p~p~~~~~~~~~~Kv~iLLqa~isr~~l~~~~L~~D~~~I~q~a~Rl~ral~ei~~~~~~~~~a~~~l~l~k~i~q~~ 1137 (1665)
++|+|+++++++++.|+|+|||+|||+.++++++|.+|+.||.|+|+||+||++||++.+||+..+.++++|||||++|+
T Consensus 642 ~~~~~~~~~~~~~~~Kv~~Llq~~i~~~~~~~~~l~~D~~~i~~~a~ri~ra~~ei~~~~~~~~~~~~~l~l~k~i~~~~ 721 (1724)
T 4f92_B 642 RVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQLAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRM 721 (1724)
T ss_dssp HSSSCCCSCCSSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf 39977688788858999999999976998665428989999999999999999999998598999999999999998288
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEEE
Q ss_conf 79998633469999999999991898711001589478733313832268999998408940198999522575389999
Q 000324 1138 WSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVEL 1217 (1665)
Q Consensus 1138 W~~~~pL~Q~~~i~~~~i~~le~~~~~~~~l~~l~~~el~~ll~~~~~~~~i~~~~~~~P~l~i~~~v~pit~~~l~v~l 1217 (1665)
|++++||+|||++|.++++++++++++|+++.++++.|+++++++|++|+.|++++++||++++++++||+|+++++|++
T Consensus 722 w~~~~~L~q~~~i~~~~~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~g~~i~~~~~~~P~~~~~~~~~p~~~~~~~~~~ 801 (1724)
T 4f92_B 722 WQSMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVEL 801 (1724)
T ss_dssp CTTSCGGGGSTTSCHHHHHHHHTSSCCGGGGGGCCHHHHHHHHTCSTTHHHHHHHHTTSCCEEEEEEEEESSSSEEEEEE
T ss_pred CCCCCCEECCCCCCHHHHHHHHHCCCCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCEEEEEE
T ss_conf 99888330689999999999982699999997289889999977945799999999978985389999716775599999
Q ss_pred EECCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 98159744778888756489999917998488776554331233465067774136799999338999504655666644
Q 000324 1218 TITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVL 1297 (1665)
Q Consensus 1218 ~i~~~~~w~~~~h~~~~~~wi~v~d~~~~~il~~~~~~l~~~~~~~~~~~~f~vp~~~p~~~~~~i~viSD~wlg~e~~~ 1297 (1665)
+++|+|.|++++||..|+|||||||++++.|||+++|.+++++..++|.++|++|+++|+||+|+|+++||+|+||+..+
T Consensus 802 ~~~~~~~w~~~~h~~~~~~~~~v~d~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~p~~~~i~~~sd~w~~~~~~~ 881 (1724)
T 4f92_B 802 TITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQL 881 (1724)
T ss_dssp EEEECSCCCTTTTTTEEEEEEEEECTTSCBEEEEEEEEEEGGGTTSCEEEEEEEECCSSCCSEEEEEEEESSSTTCEEEE
T ss_pred EEEECCCCCHHHCCCCEEEEEEEEECCCCEEEEEEEEEEEEECCCCCEEEEEEEECCCCCCCEEEEEEEECCCCCCCCEE
T ss_conf 98644635532257730599999946988388888998630026774599999988889998189999974010777346
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHC-CCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHH
Q ss_conf 4333445799999999877889998522334468999863-999899989999999873999199987899738999999
Q 000324 1298 PVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEF 1376 (1665)
Q Consensus 1298 ~vsl~~l~lp~~~~~~t~ll~l~p~~~~~L~~~~~~~l~~-~f~~~~~iQ~q~i~~l~~~~dnvii~apTGSGKTl~~~l 1376 (1665)
+++|+|+++|+++|++|+++|++|+|+++|+++.++.+|. +|.+|||+|+|+|+.+|++++|++++||||||||++|++
T Consensus 882 ~~~~~~~~~p~~~~~~t~lldl~plp~s~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliael 961 (1724)
T 4f92_B 882 PVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEF 961 (1724)
T ss_dssp EEECTTCCCCCCCCCCCCCCCCCCCBGGGSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHH
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH
T ss_conf 54242344788889987434588788554468889999972678999799999999966899689993798874699999
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHCCCCCCEEEECHHHHHHHHHHH
Q ss_conf 99999985048998099998553999999999999986178895899994887211200279959998825689999720
Q 000324 1377 AILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRW 1456 (1665)
Q Consensus 1377 ail~~l~~~~~~~~~raivI~Pt~eLa~q~~~~~~~~f~~~~~~~V~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~~~~ 1456 (1665)
||++.+.+. +++ ++|||+|+++|+.|++.+|+++|+...+++|+.++|+...+.+.+..++|+|+|||+|+.++++|
T Consensus 962 ail~~l~~~-~~~--kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~ 1038 (1724)
T 4f92_B 962 AILRMLLQS-SEG--RCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRW 1038 (1724)
T ss_dssp HHHHHHHHC-TTC--CEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTT
T ss_pred HHHHHHHHC-CCC--EEEEECCHHHHHHHHHHHHHHHHCHHCCCEEEEEECCCCCCHHHCCCCCEEEECHHHHHHHHHCC
T ss_conf 999999858-998--79998682999999999999984422097899997997812111589999998879999998384
Q ss_pred HCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf 00246787018986045312888860599999999999862389970999954489968999986366892783599987
Q 000324 1457 KQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVR 1536 (1665)
Q Consensus 1457 ~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riI~lSATl~n~~dl~~wl~~~~~~~~~f~~~~r 1536 (1665)
..+..+++++++|+||+|++++.+|+.+|.++++|+++..+.+.++|+|+||||++|++++++|+++....+++|.+..|
T Consensus 1039 ~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~R 1118 (1724)
T 4f92_B 1039 KQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVR 1118 (1724)
T ss_dssp TTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGC
T ss_pred CCCCCCCEEEEEEEECHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCCCEEEECCCCC
T ss_conf 44641352318970101104787876399999999999863688863999928889999999986799877589488888
Q ss_pred CCCEEEEEEECCCCHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 63529998402223135788721926999999873499979999586278999999998701358873211246993320
Q 000324 1537 PVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEV 1616 (1665)
Q Consensus 1537 p~~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l~~~~~~IIFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l 1616 (1665)
|+|++.++++++..+...++..+.++.+..+..+ .+.+++||||+||++|+.+|..|...+..+....+ ++....+++
T Consensus 1119 PvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~-~~~~~~~~l 1196 (1724)
T 4f92_B 1119 PVPLELHIQGFNISHTQTRLLSMAKPVYHAITKH-SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQR-FLHCTEKDL 1196 (1724)
T ss_dssp SSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHH-CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTT-TBCSCHHHH
T ss_pred CCCEEEEEEECCCCCCHHHHHHHCCHHHHHHHHH-CCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCHHH-HHCCCHHHH
T ss_conf 8870899980367771666653201499999985-37997215578889999999999988762643022-201339999
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 3557554499999874245899858999999999999995399608989
Q 000324 1617 EPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1617 ~~~~~~i~d~~L~~~l~~gV~~~H~~l~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
..+++.+.|..|++.+.+||++||+||++.+|..|+++|++|.++||||
T Consensus 1197 ~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLva 1245 (1724)
T 4f92_B 1197 IPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVA 1245 (1724)
T ss_dssp HHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEE
T ss_pred HHHHHHCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9998641428899987478899779999999999999997799849998
No 2
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=1.00 E-value=1 Score=1155.11 Aligned_cols=819 Identities=29% Similarity=0.476 Sum_probs=742.1
Q ss_pred EECCCCCCCCCC-CCCCCCCCCCCC-HHHHHHC-CCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 706999999999-988753368999-3358521-8999999999999999883899099982489860999999999999
Q 000324 460 IHVPAMKHKPLD-PNEKLIKISEMP-EWAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQL 536 (1665)
Q Consensus 460 i~ip~~~~~~~~-~~~~l~~i~~lp-~~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nilv~APTGsGKT~va~l~il~~l 536 (1665)
+..|...+++.. .+-+.+|++.|. +.+...| .+|.+|||+|+++|+.++++++|++++||||||||++|+++|++.+
T Consensus 888 ~~~p~~~~~~t~lldl~plp~s~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l 967 (1724)
T 4f92_B 888 LILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRML 967 (1724)
T ss_dssp CCCCCCCCCCCCCCCCCCCBGGGSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 44788889987434588788554468889999972678999799999999966899689993798874699999999999
Q ss_pred HHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHC-CCCCEEEEEECCCCCCHHHHCCCCEEEECHHHHHHHHHHC
Q ss_conf 842899999989970999993548789999999987310-3894999997888636764403649992723599998314
Q 000324 537 ALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS 615 (1665)
Q Consensus 537 ~~~~~~~g~~~~~~~kii~iaP~kaLa~q~~~~~~~~~~-~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~ 615 (1665)
.... +.++||++|+|+||.|++++|.++++ .+|++|+.++||...+.+....++|+|||||+|+.++|++
T Consensus 968 ~~~~---------~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~ 1038 (1724)
T 4f92_B 968 LQSS---------EGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRW 1038 (1724)
T ss_dssp HHCT---------TCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTT
T ss_pred HHCC---------CCEEEEECCHHHHHHHHHHHHHHHHCHHCCCEEEEEECCCCCCHHHCCCCCEEEECHHHHHHHHHCC
T ss_conf 8589---------9879998682999999999999984422097899997997812111589999998879999998384
Q ss_pred CCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEECCCC
Q ss_conf 99864454008999253100168804899999999999851168700999933378968899997002468569834997
Q 000324 616 GDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSY 695 (1665)
Q Consensus 616 ~~~~~l~~v~liIiDEvH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATl~n~~dva~~l~~~~~~~~~~f~~~~ 695 (1665)
.....++.+++||+||+|++.+.||+++|.+++++.+.....+.++|+|+||||++|+++++.||++.+ .+++.|.+++
T Consensus 1039 ~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~-~~~~~~~~~~ 1117 (1724)
T 4f92_B 1039 KQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSA-TSTFNFHPNV 1117 (1724)
T ss_dssp TTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCS-TTEEECCGGG
T ss_pred CCCCCCCEEEEEEEECHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCC-CCEEEECCCC
T ss_conf 446413523189701011047878763999999999998636888639999288899999999867998-7758948888
Q ss_pred CCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf 54232289985203763578898779999999998389829999658267999999999974101322445556801399
Q 000324 696 RPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSRE 775 (1665)
Q Consensus 696 rp~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLIFv~sr~~~~~la~~L~~~~~~~~~l~~~~~~~~~~~~ 775 (1665)
||+|+..++.++.......++..++..++..+.....++++||||+||+.|..+|..|............++.. ..+
T Consensus 1118 RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~---~~~ 1194 (1724)
T 4f92_B 1118 RPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHC---TEK 1194 (1724)
T ss_dssp CSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCS---CHH
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHCCHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHCC---CHH
T ss_conf 88870899980367771666653201499999985379972155788899999999999887626430222013---399
Q ss_pred HHHHHHHCCCCCHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 99852101364103421078579936899978899999997099977687430000245898628999635013799997
Q 000324 776 ILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGA 855 (1665)
Q Consensus 776 ~l~~~~~~~~~~~l~~ll~~gv~~~Hagl~~~dR~~v~~~F~~g~i~VLVaT~tla~GVnlP~~~vVI~~t~~yd~~~g~ 855 (1665)
.+........+..|++++.+||++|||||++.+|..++++|++|.++|||||+++|||||+|+++|||.+++.|++..++
T Consensus 1195 ~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~ 1274 (1724)
T 4f92_B 1195 DLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHA 1274 (1724)
T ss_dssp HHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTE
T ss_pred HHHHHHHHCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECHHHHCCCCCCCCEEEEECCCCCCCCCCC
T ss_conf 99999864142889998747889977999999999999999779984999886997578988618999567113675556
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 54389988984312368999998228999908873899998420887632000475699999998825524958999999
Q 000324 856 WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWI 935 (1665)
Q Consensus 856 ~~~ls~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~piES~l~~~l~d~lnaeI~~g~i~~~~~~~~wl 935 (1665)
+.+++..+|+||+|||||+|+|..|.+++++...+..+|.++++.++|+||+|...+.+++|+||+.|++.+.+++++|+
T Consensus 1275 ~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~~~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l 1354 (1724)
T 4f92_B 1275 YVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYL 1354 (1724)
T ss_dssp EEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTTSCBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 67799999997615135788788628999965457789999737997035454411178999999854348899999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHH
Q ss_conf 76588987611986558992101350138999889999999998676874323578942259389999982589888999
Q 000324 936 GYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTIST 1015 (1665)
Q Consensus 936 ~~t~~~~r~~~np~~y~~~~~~~~~d~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~t~lG~i~s~~yi~~~T~~~ 1015 (1665)
++||+|+|+.+||.+|++... +...++.++.++|++++..|.+++||..++ ++.+.+|++|+++|+|||+|.|+..
T Consensus 1355 ~~Tfl~~r~~~nP~~y~l~~~---~~~~~~~~l~~lv~~~l~~L~~~~~I~~~~-~~~l~~T~lG~i~s~~yi~~~t~~~ 1430 (1724)
T 4f92_B 1355 TWTFLYRRMTQNPNYYNLQGI---SHRHLSDHLSELVEQTLSDLEQSKCISIED-EMDVAPLNLGMIAAYYYINYTTIEL 1430 (1724)
T ss_dssp TTSSHHHHHHHSGGGTTCSCC---SHHHHHHHHHHHHHHHHHHHHHTTSEEEET-TTEEEECHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCC---CHHHHHHHHHHHHHHHHHHHHHCCCEEECC-CCCEEECHHHHHHHHHCCCHHHHHH
T ss_conf 730799987307320256653---355678999999999999999888999869-9878666899999997789999999
Q ss_pred HHHHCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 99741999998989998507934787967814899999985039998889-89892799999999987498889983030
Q 000324 1016 YNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKE-SLEEPSAKINVLLQAYISQLKLEGLSLTS 1094 (1665)
Q Consensus 1016 ~~~~l~~~~~~~~ll~ils~s~EF~~i~vR~~E~~eL~~L~~~~p~p~~~-~~~~~~~Kv~iLLqa~isr~~l~~~~L~~ 1094 (1665)
|...+++.++..++|+++|.|.||..+++|++|+..+.+|.+.+|+++.. .+++|+.|+++|||||++|++++ .+|.+
T Consensus 1431 ~~~~l~~~~~~~~~L~il~~a~ef~~i~~R~~E~~~l~~l~~~~~~~~~~~~~~~~~~K~~lLlqa~~~r~~l~-~~~~~ 1509 (1724)
T 4f92_B 1431 FSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLS-AELQS 1509 (1724)
T ss_dssp HHHHCCTTCCHHHHHHHHHTSGGGTTCCCCTTHHHHHHHHHHHSSSCCSSCCTTCHHHHHHHHHHHHHTTCCCC-HHHHH
T ss_pred HHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC-HHHHH
T ss_conf 99854436988889988407845456643606899999998638977774445788999999999997788677-67999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCC-CCHHHCCCCH
Q ss_conf 199999929999999999999729999999999999998725679998633469999999999991898-7110015894
Q 000324 1095 DMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF-AWERYYDLSP 1173 (1665)
Q Consensus 1095 D~~~I~q~a~Rl~ral~ei~~~~~~~~~a~~~l~l~k~i~q~~W~~~~pL~Q~~~i~~~~i~~le~~~~-~~~~l~~l~~ 1173 (1665)
|+..|++++.||++|++|+|...||+..+..+++|+|||.|++|++.+||+|+|+|+...+++|..+|+ ++.++.++++
T Consensus 1510 D~~~i~~~~~rl~~a~~d~~~~~g~~~~~~~~~~l~q~l~~~~w~~~~~L~qip~i~~~~ar~l~~~gi~t~~dl~~~~~ 1589 (1724)
T 4f92_B 1510 DTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMED 1589 (1724)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHTTCCTTSCGGGGSTTCCHHHHHHHHHHTCCSHHHHHSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCHHHHHHHHHCCCCCHHHHHHCCH
T ss_conf 99999999999999999999978988999999999999994788677687347998989999999779999999985899
Q ss_pred HHHHHHHCC-CHHHHHHHHHHHCCCCCEEEEEEEECC----CCEEEEEEEECCCCCCCCCCCCCC------CCEEEEEEE
Q ss_conf 787333138-322689999984089401989995225----753899999815974477888875------648999991
Q 000324 1174 QELGELIRF-PKMGRTLHKFVHQFPKLILAAHVQPIT----RTVLKVELTITPDFLWDDKVHGYV------EPFWVIVED 1242 (1665)
Q Consensus 1174 ~el~~ll~~-~~~~~~i~~~~~~~P~l~i~~~v~pit----~~~l~v~l~i~~~~~w~~~~h~~~------~~~wi~v~d 1242 (1665)
++++.+++. ++++.+|.+++++||++++++.+.+.. +..+.+.++++++...+..++++. |.||++|+|
T Consensus 1590 ~~~~~ll~~~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~p~~k~e~w~~vvg~ 1669 (1724)
T 4f92_B 1590 EERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGD 1669 (1724)
T ss_dssp HHHTTSSCCCHHHHHHHHHHHHHSCCEEEEEEEETSSSCCTTSEEEEEEEEEESSCCCSCCCCTTSCSCCCCCEEEEEEE
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCEEEEEEEEEECCCCCCEEECCCCCCCCCCCEEEEEEE
T ss_conf 99999977996899999999986896389999805731347975999999985477787065678998872277999998
Q ss_pred CCCCEEEEEEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCC
Q ss_conf 79984887765543312334650677741367999993389995046556666444333
Q 000324 1243 NDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSF 1301 (1665)
Q Consensus 1243 ~~~~~il~~~~~~l~~~~~~~~~~~~f~vp~~~p~~~~~~i~viSD~wlg~e~~~~vsl 1301 (1665)
.+++.++.++++.+++. ....++|++| ++|+++|.++++||+|+|+|.+..+++
T Consensus 1670 ~~~~~l~~~kr~~~~~~---~~~~l~f~~p--~~g~~~~~~~~~~d~y~g~d~~~~~~~ 1723 (1724)
T 4f92_B 1670 AKSNSLISIKRLTLQQK---AKVKLDFVAP--ATGAHNYTLYFMSDAYMGCDQEYKFSV 1723 (1724)
T ss_dssp TTTTEEEEEEEECCSSE---EEEEEEEECC--SSSCEEEEEEEEESSCSSCCEEEEEEE
T ss_pred CCCCEEEEEEEEECCCC---CEEEEEEEEC--CCCCEEEEEEEEECCCCCCCEEEEEEC
T ss_conf 89994999998814778---6389999937--999546999998357345563688745
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=1.00 E-value=1 Score=785.09 Aligned_cols=653 Identities=25% Similarity=0.366 Sum_probs=545.1
Q ss_pred CCHHHHHHC--CCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCC
Q ss_conf 993358521--899999999999999988389909998248986099999999999984289999998997099999354
Q 000324 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1665)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP~ 559 (1665)
||+++...| .||..|+++|+++++.++ .++|++++||||||||+++.+++++.+.. +.+++|++|+
T Consensus 10 l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~-~~~~~lv~apTGsGKT~~~~l~il~~~~~-----------~~~~l~i~P~ 77 (702)
T 2p6r_A 10 ISSYAVGILKEEGIEELFPPQAEAVEKVF-SGKNLLLAMPTAAGKTLLAEMAMVREAIK-----------GGKSLYVVPL 77 (702)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHHHT-TCSCEEEECSSHHHHHHHHHHHHHHHHHT-----------TCCEEEEESS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHHHHHHHH-----------CCCEEEEECC
T ss_conf 59999999986899889999999999983-89968998689617999999999999986-----------8959999370
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCC-C
Q ss_conf 878999999998731038949999978886367644036499927235999983149986445400899925310016-8
Q 000324 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (1665)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEvH~l~d-~ 638 (1665)
++|+.|++++|+ .+..+|++|+.++|+..........++|+|+|||+|+.+.++.. .+++.+++||+||+|++.+ .
T Consensus 78 r~La~q~~~~~~-~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~~~--~~l~~~~~vIiDE~H~l~~~~ 154 (702)
T 2p6r_A 78 RALAGEKYESFK-KWEKIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRA--SWIKAVSCLVVDEIHLLDSEK 154 (702)
T ss_dssp HHHHHHHHHHHT-TTTTTTCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTC--SGGGGCCEEEETTGGGGGCTT
T ss_pred HHHHHHHHHHHH-HHHHCCCEEEEEECCCCCCHHHCCCCCEEEECHHHHHHHHHCCH--HHHHHCCEEEEEEEEECCCCC
T ss_conf 999999999999-77704988999838877664352699999989899999997575--577625989885025547877
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEEEEEC---CCHH--
Q ss_conf 80489999999999985116870099993337896889999700246856983499754232289985203---7635--
Q 000324 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQV---KKPL-- 713 (1665)
Q Consensus 639 rg~~le~iv~r~~~~~~~~~~~~riv~lSATl~n~~dva~~l~~~~~~~~~~f~~~~rp~~l~~~~~~~~~---~~~~-- 713 (1665)
||+.++.+++++.+ ..+.+|+|+||||++|..+++.|++.. .+...+||+|+...+..... ....
T Consensus 155 r~~~~~~ll~~l~~----~~~~~~ii~lSATl~n~~~~~~~l~~~------~~~~~~r~~~l~~~~~~~~~~~~~~~~~~ 224 (702)
T 2p6r_A 155 RGATLEILVTKMRR----MNKALRVIGLSATAPNVTEIAEWLDAD------YYVSDWRPVPLVEGVLCEGTLELFDGAFS 224 (702)
T ss_dssp THHHHHHHHHHHHH----HCTTCEEEEEECCCTTHHHHHHHTTCE------EEECCCCSSCEEEEEECSSEEEEEETTEE
T ss_pred CCCHHHHHHHHHHH----CCCCCEEEEECCCCCCHHHHHHHHCCC------CCCCCCCCCCCEEEEEECCEEECCCCCHH
T ss_conf 65279999999984----386765999788768999999984897------23688877664688861782310576301
Q ss_pred --HHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHH
Q ss_conf --788987799999999983898299996582679999999999741013224455568013999985210136410342
Q 000324 714 --QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (1665)
Q Consensus 714 --~~~~~l~~~~~~~i~~~~~~~~vLIFv~sr~~~~~la~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 791 (1665)
.... +...+.+.+ ..++++||||++++++..++..|.+.... ++........+ ........+..+++
T Consensus 225 ~~~~~~-~~~~~~~~~---~~~~~~LVF~~s~~~~~~~a~~L~~~~~~------~~~~~~~~~~i-~~~~~~~~~~~l~~ 293 (702)
T 2p6r_A 225 TSRRVK-FEELVEECV---AENGGVLVFESTRRGAEKTAVKLSAITAK------YVENEGLEKAI-LEENEGEMSRKLAE 293 (702)
T ss_dssp EEEECC-HHHHHHHHH---HTTCCEEEECSSHHHHHHHHHHHHHHHHT------TCCCSSHHHHH-HTTCCSHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHH---HCCCCEEEECCCHHHHHHHHHHHHHHHHH------HCCHHHHHHHH-HHHCCCCCCHHHHH
T ss_conf 444546-999999999---66997899838878999999999999876------46958899999-86245532199999
Q ss_pred HCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 10785799368999788999999970999776874300002458986289996350137999975438998898431236
Q 000324 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871 (1665)
Q Consensus 792 ll~~gv~~~Hagl~~~dR~~v~~~F~~g~i~VLVaT~tla~GVnlP~~~vVI~~t~~yd~~~g~~~~ls~~~~~Qr~GRA 871 (1665)
+++.|+++|||+|+..+|..+++.|++|.++|||||++++||||+|++++||+++..|| +.+.++|..+|+||+|||
T Consensus 294 ~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd---~~~~~~s~~~~~Qr~GRa 370 (702)
T 2p6r_A 294 CVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFD---GYSKRIKVSEYKQMAGRA 370 (702)
T ss_dssp HHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEES---SSEEECCHHHHHHHHTTB
T ss_pred HHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEEEEECCCEEEC---CCCCCCCHHHHHHHHHHC
T ss_conf 98469288669999999999999998799849997838866578873399984762307---877758999999984332
Q ss_pred CCCCCCCCEEEEEEECCCCHHHHH-HHH-CCCCCCCCCHHH--HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 899999822899990887389999-842-088763200047--5699999998825524958999999765889876119
Q 000324 872 GRPQYDSYGEGIIITGHSELRYYL-SLM-NQQLPIESQFVS--KLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRN 947 (1665)
Q Consensus 872 GR~g~d~~G~~iil~~~~~~~~y~-~ll-~~~~piES~l~~--~l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~~r~~~n 947 (1665)
||+|+|..|.|+++++..+...+. +++ +.+.|++|++.. .+.++++++++.|.+.+.+++.+|+++||+|+++. .
T Consensus 371 GR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~-~ 449 (702)
T 2p6r_A 371 GRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNE-I 449 (702)
T ss_dssp SCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHC-C
T ss_pred CCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH-H
T ss_conf 799999873699995573189999999608998846516860558999999997177888999999998506777501-7
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCC-CCH
Q ss_conf 8655899210135013899988999999999867687432357894225938999998258988899999741999-998
Q 000324 948 PALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPT-MGD 1026 (1665)
Q Consensus 948 p~~y~~~~~~~~~d~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~t~lG~i~s~~yi~~~T~~~~~~~l~~~-~~~ 1026 (1665)
| ..+.+++++..|.+.|+|..+ +.+.+|++|+++|+||++|.++++|...++.. .+.
T Consensus 450 ~-------------------~~~~~~~al~~L~~~g~i~~~---~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (702)
T 2p6r_A 450 S-------------------LSYELERVVRQLENWGMVVEA---AHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSD 507 (702)
T ss_dssp C-------------------CHHHHHHHHHHHHHTTSEEES---SSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCH
T ss_pred H-------------------HHHHHHHHHHHHHHCCCEEEC---CEECCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCH
T ss_conf 8-------------------999999999999988594289---906648699999998578989999999743046878
Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCC-----CCCC-CCCC-CC--CHHHHHHHHHHHHHCCCCCCC----CCC-
Q ss_conf 98999850793478796781489999998503-----9998-8898-98--927999999999874988899----830-
Q 000324 1027 IELCRLFSLSEEFKYVTVRQDEKMELAKLLDR-----VPIP-VKES-LE--EPSAKINVLLQAYISQLKLEG----LSL- 1092 (1665)
Q Consensus 1027 ~~ll~ils~s~EF~~i~vR~~E~~eL~~L~~~-----~p~p-~~~~-~~--~~~~Kv~iLLqa~isr~~l~~----~~L- 1092 (1665)
.+++.++|++.||.++++|++| .++.+++.+ .++| +++. .+ .++.|+++|||+||+|.+++. |.+
T Consensus 508 ~~~l~~i~~~~e~~~i~~r~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~~~~ 586 (702)
T 2p6r_A 508 IGALHLICRTPDMERLTVRKTD-SWVEEEAFRLRKELSYYPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIA 586 (702)
T ss_dssp HHHHHHHHHSTTSCCCCCCTTT-HHHHHHHHHHGGGSSCCCCTTSTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCC
T ss_pred HHHHHHHHCCCCCCCCCCCCCH-HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
T ss_conf 9999995377444457778765-999999986546666786300001234566699999999998279868899885776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCC-CCHHHCCC
Q ss_conf 30199999929999999999999729999999999999998725679998633469999999999991898-71100158
Q 000324 1093 TSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF-AWERYYDL 1171 (1665)
Q Consensus 1093 ~~D~~~I~q~a~Rl~ral~ei~~~~~~~~~a~~~l~l~k~i~q~~W~~~~pL~Q~~~i~~~~i~~le~~~~-~~~~l~~l 1171 (1665)
.+|+.+|+++|.||++|+++||...||. .++.|+|||.+++|+..+||+|+|+++...+++|+++++ ++.++.++
T Consensus 587 ~gdl~~i~~~a~~l~~a~~~i~~~~g~~----~l~~l~~ri~~gv~~~~~~L~qlp~v~~~~ar~l~~~g~~s~~~l~~~ 662 (702)
T 2p6r_A 587 PGDLRRIVETAEWLSNAMNRIAEEVGNT----SVSGLTERIKHGVKEELLELVRIRHIGRVRARKLYNAGIRNAEDIVRH 662 (702)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCC----SSTTHHHHHHHTCCGGGHHHHTSTTCCHHHHHHHHTTTCCSHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHH
T ss_conf 7759999999999999999999973999----999999999808982227561589999999999997699989999861
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 947873331383226899999840894019899
Q 000324 1172 SPQELGELIRFPKMGRTLHKFVHQFPKLILAAH 1204 (1665)
Q Consensus 1172 ~~~el~~ll~~~~~~~~i~~~~~~~P~l~i~~~ 1204 (1665)
+ +++..+++ +++|+.+++.++ +|.+++++.
T Consensus 663 ~-~~l~~ll~-~~~~~~i~~~~~-~p~~~~~~~ 692 (702)
T 2p6r_A 663 R-EKVASLIG-RGIAERVVEGIS-VKSLNPESA 692 (702)
T ss_dssp H-HHHHHHHC-HHHHHHHHHHHH-HHC------
T ss_pred H-HHHHHHHC-HHHHHHHHHHCC-CCCCCCCHH
T ss_conf 5-89999858-457999999568-885681045
No 4
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=778.71 Aligned_cols=658 Identities=26% Similarity=0.377 Sum_probs=548.7
Q ss_pred CCCHHHHHHC--CCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECC
Q ss_conf 9993358521--89999999999999998838990999824898609999999999998428999999899709999935
Q 000324 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1665)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP 558 (1665)
.||+++...| .||..|+++|.++++.++..++|++++||||||||+++.+++++.+... +.+++|++|
T Consensus 14 ~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----------~~~il~i~P 83 (715)
T 2va8_A 14 KLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN----------GGKAIYVTP 83 (715)
T ss_dssp SSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS----------CSEEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHC----------CCEEEEEEC
T ss_conf 9999999999867998799999999999864899489984898759999999999999977----------984999908
Q ss_pred CHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCC-
Q ss_conf 4878999999998731038949999978886367644036499927235999983149986445400899925310016-
Q 000324 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD- 637 (1665)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEvH~l~d- 637 (1665)
+++|+.|++++|+ .+..+|++|+.++|+..........++|+|+|||+|+.+.++.. .+++.+++||+||+|.+.+
T Consensus 84 ~r~La~q~~~~~~-~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~--~~l~~~~~vIiDE~H~l~~~ 160 (715)
T 2va8_A 84 LRALTNEKYLTFK-DWELIGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHRP--EWLNEVNYFVLDELHYLNDP 160 (715)
T ss_dssp CHHHHHHHHHHHG-GGGGGTCCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHHCC--GGGGGEEEEEECSGGGGGCT
T ss_pred CHHHHHHHHHHHH-HHHCCCCEEEEEECCCCCCHHHCCCCCEEEECHHHHHHHHHCCH--HHHHCCCEEEEECHHHCCCC
T ss_conf 5999999999998-76527988999848977762013799999985899999996785--57643698999535552786
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEEEEECC-------
Q ss_conf 8804899999999999851168700999933378968899997002468569834997542322899852037-------
Q 000324 638 NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVK------- 710 (1665)
Q Consensus 638 ~rg~~le~iv~r~~~~~~~~~~~~riv~lSATl~n~~dva~~l~~~~~~~~~~f~~~~rp~~l~~~~~~~~~~------- 710 (1665)
.||+.++.++.++. .+|+|+||||++|+.+++.|++.. .+...+||+|+...+......
T Consensus 161 ~~~~~l~~i~~~~~--------~~~ii~lSATl~n~~~~~~~l~~~------~~~~~~r~~~l~~~~~~~~~~~~~~~~~ 226 (715)
T 2va8_A 161 ERGPVVESVTIRAK--------RRNLLALSATISNYKQIAKWLGAE------PVATNWRPVPLIEGVIYPERKKKEYNVI 226 (715)
T ss_dssp TTHHHHHHHHHHHH--------TSEEEEEESCCTTHHHHHHHHTCE------EEECCCCSSCEEEEEEEECSSTTEEEEE
T ss_pred CCCHHHHHHHHHCC--------CCCEEEECCCCCCHHHHHHHHCCC------CCCCCCCCCCCEEEEEECCCCCCCEEEE
T ss_conf 62229999998653--------672899717879999999984997------4579999887468888358766540465
Q ss_pred --C-HHHHHHHHHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHC---
Q ss_conf --6-3578898779999999998-38982999965826799999999997410132244555680139999852101---
Q 000324 711 --K-PLQRFQLMNDLCYEKVVAV-AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDM--- 783 (1665)
Q Consensus 711 --~-~~~~~~~l~~~~~~~i~~~-~~~~~vLIFv~sr~~~~~la~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~--- 783 (1665)
. ....+. .....+..+... ..++++||||++++++..++..|.+..... ++. ......+......
T Consensus 227 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~-----~~~--~~~~~~~~~~~~~i~~ 298 (715)
T 2va8_A 227 FKDNTTKKVH-GDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFV-----SLD--ENALSEILKQLDDIEE 298 (715)
T ss_dssp ETTSCEEEEE-SSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSS-----CCC--HHHHHHHHHHHHTCCS
T ss_pred CCCCHHHHCC-CCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHC-----CCC--HHHHHHHHHHHHHHHH
T ss_conf 2760443213-4438999999998669977999798899999999999987654-----288--6778999999998663
Q ss_pred ---CCCCHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCC-CCCCC
Q ss_conf ---36410342107857993689997889999999709997768743000024589862899963501379999-75438
Q 000324 784 ---VKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKG-AWTEL 859 (1665)
Q Consensus 784 ---~~~~~l~~ll~~gv~~~Hagl~~~dR~~v~~~F~~g~i~VLVaT~tla~GVnlP~~~vVI~~t~~yd~~~g-~~~~l 859 (1665)
..+..++++++.|+++|||+|+..+|..+++.|++|.++|||||++++||||+|++++||+++..|++..+ .+.++
T Consensus 299 ~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~ 378 (715)
T 2va8_A 299 GGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEI 378 (715)
T ss_dssp SCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------
T ss_pred CCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECHHHHCCCCCCCEEEEEECCEECCCCCCCCCCCC
T ss_conf 45532299999996687887899999999999999986998599978087661688854999918756446677787759
Q ss_pred CHHHHHHHHCCCCCCCCCCCEEEEEEECCCC-H-HHHHHHH-CCCCCCCCCHHH--HHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 9988984312368999998228999908873-8-9999842-088763200047--569999999882552495899999
Q 000324 860 SPLDIMQMLGRAGRPQYDSYGEGIIITGHSE-L-RYYLSLM-NQQLPIESQFVS--KLADQLNAEIVLGTVQNAKEACNW 934 (1665)
Q Consensus 860 s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~-~-~~y~~ll-~~~~piES~l~~--~l~d~lnaeI~~g~i~~~~~~~~w 934 (1665)
|..+|+||+|||||+|+|..|.|++++++.+ . .++.+++ +.+.|++|++.. .+.++++++++.|.+.+.+++.+|
T Consensus 379 s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~ 458 (715)
T 2va8_A 379 PIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENF 458 (715)
T ss_dssp CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHH
T ss_pred CHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 99999998424279988887569999678067999999997089987353378666799999999851566889999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHH
Q ss_conf 97658898761198655899210135013899988999999999867687432357894225938999998258988899
Q 000324 935 IGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTIS 1014 (1665)
Q Consensus 935 l~~t~~~~r~~~np~~y~~~~~~~~~d~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~t~lG~i~s~~yi~~~T~~ 1014 (1665)
+++||+|+++.. .-+++|+..|.+.|+|..++ +.+.+|++|+++|+||++|.+++
T Consensus 459 l~~~~~~~~~~~-----------------------~~~~~al~~L~~~g~i~~~~--~~~~~t~lG~~~~~~~~~~~~~~ 513 (715)
T 2va8_A 459 AYESLLAKQLVD-----------------------VYFDRAIRWLLEHSFIKEEG--NTFALTNFGKRVADLYINPFTAD 513 (715)
T ss_dssp HTTSSSCHHHHH-----------------------HHHHHHHHHHHHTTSEEECS--SEEEECHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHCCH-----------------------HHHHHHHHHHHHCCCEEECC--CEEEECHHHHHHHHHCCCHHHHH
T ss_conf 985078764263-----------------------88999999998884976669--86866768999999748986799
Q ss_pred HHHHHCCC--CCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCC------CCCCCCCC-CCC--HHHHHHHHHHHHHC
Q ss_conf 99974199--999898999850793478796781489999998503------99988898-989--27999999999874
Q 000324 1015 TYNEHLKP--TMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDR------VPIPVKES-LEE--PSAKINVLLQAYIS 1083 (1665)
Q Consensus 1015 ~~~~~l~~--~~~~~~ll~ils~s~EF~~i~vR~~E~~eL~~L~~~------~p~p~~~~-~~~--~~~Kv~iLLqa~is 1083 (1665)
+|...++. ..+..+++.++|++.||.++++|++|+.+|.+++.. .+.|++.. .++ ++.|+++|||+||+
T Consensus 514 ~~~~~~~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~ 593 (715)
T 2va8_A 514 IIRKGLEGHKASCELAYLHLLAFTPDGPLVSVGRNEEEELIELLEDLDCELLIEEPYEEDEYSLYINALKVALIMKDWMD 593 (715)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHHHSTTSCCCCCCHHHHHHHHHHHTTCSSCCSSCCCSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 99998654257878999999526843345764867899999999852111113666543102345777999999999984
Q ss_pred CCCCCC----CCC-HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 988899----830-301999999299999999999997299999999999999987256799986334699999999999
Q 000324 1084 QLKLEG----LSL-TSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKL 1158 (1665)
Q Consensus 1084 r~~l~~----~~L-~~D~~~I~q~a~Rl~ral~ei~~~~~~~~~a~~~l~l~k~i~q~~W~~~~pL~Q~~~i~~~~i~~l 1158 (1665)
|.+++. |.+ .+|+.+++++|.|+++|+++||...||...+..+..|++||.+++|+..+||+|||++++.+++++
T Consensus 594 ~~~~~~i~~~y~~~~gdl~~l~~~a~~l~~a~~~i~~~~~~~~~~~~l~~l~~rl~~gv~~e~~~L~qlp~i~~~rar~L 673 (715)
T 2va8_A 594 EVDEDTILSKYNIGSGDLRNMVETMDWLTYSAYHLSRELKLNEHADKLRILNLRVRDGIKEELLELVQISGVGRKRARLL 673 (715)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCGGGHHHHTSTTCCHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHCCHHHCCCCCHHHHHHH
T ss_conf 99878999997898244999999999999999999999494889999999999998289832140541899998999999
Q ss_pred HHCCC-CCHHHCCCCHHHHHHHHCCCHHHHHHHH-HHHCCCCCE
Q ss_conf 91898-7110015894787333138322689999-984089401
Q 000324 1159 EKKDF-AWERYYDLSPQELGELIRFPKMGRTLHK-FVHQFPKLI 1200 (1665)
Q Consensus 1159 e~~~~-~~~~l~~l~~~el~~ll~~~~~~~~i~~-~~~~~P~l~ 1200 (1665)
+++++ ++.++. .+++++..+++ +++|+.+++ +..++|.++
T Consensus 674 ~~~g~~s~~~l~-~~~~~l~~~l~-~~~~~~i~~~~~~~~~~~~ 715 (715)
T 2va8_A 674 YNNGIKELGDVV-MNPDKVKNLLG-QKLGEKVVQEAARLLNRFH 715 (715)
T ss_dssp HHTTCCSHHHHH-HCHHHHHHHHC-HHHHHHHHHHHHHHHC---
T ss_pred HHCCCCCHHHHH-CCHHHHHHHHC-HHHHHHHHHHHHHHHCCCC
T ss_conf 985999899982-79999999967-5489999999987625579
No 5
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=1.00 E-value=1 Score=775.05 Aligned_cols=657 Identities=25% Similarity=0.370 Sum_probs=541.3
Q ss_pred CCCHHHHHHC--CCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECC
Q ss_conf 9993358521--89999999999999998838990999824898609999999999998428999999899709999935
Q 000324 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1665)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP 558 (1665)
.||+++...| .||..|+++|.++++.++..++|++++||||||||+++++++++.+... +.+++|++|
T Consensus 7 ~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----------~~~~l~i~P 76 (720)
T 2zj8_A 7 RVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ----------GGKAVYIVP 76 (720)
T ss_dssp CSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH----------CSEEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHC----------CCEEEEECC
T ss_conf 9998999999877998899999999999855799489986996379999999999999867----------998999859
Q ss_pred CHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCC-
Q ss_conf 4878999999998731038949999978886367644036499927235999983149986445400899925310016-
Q 000324 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD- 637 (1665)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEvH~l~d- 637 (1665)
+++|+.|++++|. .+..+|++|+.++|+..........++|+|+|||+|+.+.++.. .+++.+++||+||+|++.+
T Consensus 77 ~raLa~q~~~~~~-~l~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~--~~l~~~~~vIiDE~H~l~~~ 153 (720)
T 2zj8_A 77 LKALAEEKFQEFQ-DWEKIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGS--SWIKDVKILVADEIHLIGSR 153 (720)
T ss_dssp SGGGHHHHHHHTG-GGGGGTCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHTC--TTGGGEEEEEEETGGGGGCT
T ss_pred CHHHHHHHHHHHH-HHHHCCCEEEEECCCCCCCCCCCCCCCEEEECHHHHHHHHHCCH--HHHHCCCEEEEECCCCCCCC
T ss_conf 6999999999999-88735977999638977641214799999988899999997571--46652798999898556787
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEEEEEC---CCH-H
Q ss_conf 880489999999999985116870099993337896889999700246856983499754232289985203---763-5
Q 000324 638 NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQV---KKP-L 713 (1665)
Q Consensus 638 ~rg~~le~iv~r~~~~~~~~~~~~riv~lSATl~n~~dva~~l~~~~~~~~~~f~~~~rp~~l~~~~~~~~~---~~~-~ 713 (1665)
+||+.++.++.++. ..+|+|+||||++|+.+++.|++.. .+...+||+|+...+..-.. ... .
T Consensus 154 ~r~~~~~~ll~~l~-------~~~~ii~lSATl~n~~~~~~~l~~~------~~~~~~rp~~l~~~~~~~~~~~~~~~~~ 220 (720)
T 2zj8_A 154 DRGATLEVILAHML-------GKAQIIGLSATIGNPEELAEWLNAE------LIVSDWRPVKLRRGVFYQGFVTWEDGSI 220 (720)
T ss_dssp TTHHHHHHHHHHHB-------TTBEEEEEECCCSCHHHHHHHTTEE------EEECCCCSSEEEEEEEETTEEEETTSCE
T ss_pred CCCHHHHHHHHHHH-------CCCEEEEECCCCCCHHHHHHHHCCC------CCCCCCCCCCCEEEEEECCEEECCCCCH
T ss_conf 64479999999864-------0776999758868999999982986------0378988876368897578131165320
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH----HCCCCCHH
Q ss_conf 78898779999999998389829999658267999999999974101322445556801399998521----01364103
Q 000324 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHT----DMVKSNDL 789 (1665)
Q Consensus 714 ~~~~~l~~~~~~~i~~~~~~~~vLIFv~sr~~~~~la~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~----~~~~~~~l 789 (1665)
.........+.+. ...++++||||+++++++.++..|.+..... +. ......+.... ....+..|
T Consensus 221 ~~~~~~~~~~~~~---~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~------~~--~~~~~~~~~~~~~i~~~~~~~~l 289 (720)
T 2zj8_A 221 DRFSSWEELVYDA---IRKKKGALIFVNMRRKAERVALELSKKVKSL------LT--KPEIRALNELADSLEENPTNEKL 289 (720)
T ss_dssp EECSSTTHHHHHH---HHTTCCEEEECSCHHHHHHHHHHHHHHHGGG------SC--HHHHHHHHHHHHTSCSCHHHHHH
T ss_pred HHHHHHHHHHHHH---HHCCCCEEEEECCHHHHHHHHHHHHHHHHHH------CC--HHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 0016999999999---8679988999658799999999999999874------59--06689999999987516650889
Q ss_pred HHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 42107857993689997889999999709997768743000024589862899963501379999754389988984312
Q 000324 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLG 869 (1665)
Q Consensus 790 ~~ll~~gv~~~Hagl~~~dR~~v~~~F~~g~i~VLVaT~tla~GVnlP~~~vVI~~t~~yd~~~g~~~~ls~~~~~Qr~G 869 (1665)
+++++.||++|||+|++.+|..+++.|++|.++|||||++++||||+|++++||++++.|| .. ++.++|..+|+||+|
T Consensus 290 ~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd-~~-g~~~~s~~~~~Qr~G 367 (720)
T 2zj8_A 290 AKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYS-DF-GMERIPIIEVHQMLG 367 (720)
T ss_dssp HHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECC-SS-SCEECCHHHHHHHHT
T ss_pred HHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEEEEECCCEEEC-CC-CCCCCCHHHHHHHHH
T ss_conf 9998519463248999999999999997799759998818666288885289984872406-88-876089999999875
Q ss_pred CCCCCCCCCCEEEEEEECCCCHHH-HHHHH-CCCCCCCCCHHH--HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 368999998228999908873899-99842-088763200047--56999999988255249589999997658898761
Q 000324 870 RAGRPQYDSYGEGIIITGHSELRY-YLSLM-NQQLPIESQFVS--KLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRML 945 (1665)
Q Consensus 870 RAGR~g~d~~G~~iil~~~~~~~~-y~~ll-~~~~piES~l~~--~l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~~r~~ 945 (1665)
||||+|+|..|.|+++++..+... +..++ +.+.|++|++.. .+.++++++++.|.+.+.+++.+|+++||+|+++.
T Consensus 368 RaGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~ 447 (720)
T 2zj8_A 368 RAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRK 447 (720)
T ss_dssp TBCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCS
T ss_pred HCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHCC
T ss_conf 44899888876699996671099999999618998717656860439999999997177889999999998276877436
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCC--
Q ss_conf 198655899210135013899988999999999867687432357894225938999998258988899999741999--
Q 000324 946 RNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPT-- 1023 (1665)
Q Consensus 946 ~np~~y~~~~~~~~~d~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~t~lG~i~s~~yi~~~T~~~~~~~l~~~-- 1023 (1665)
. + .+..+.+++++..|...|+|..+. .+.+.+|++|+++|+||++|.+++.|...++..
T Consensus 448 ~--------------~----~~~~~~~~~~l~~L~~~~~i~~~~-~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (720)
T 2zj8_A 448 D--------------T----YSLEEKIRNILYFLLENEFIEISL-EDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVK 508 (720)
T ss_dssp C--------------C----HHHHHHHHHHHHHHHHTTSEEECT-TSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred C--------------H----HHHHHHHHHHHHHHHHCCCEEECC-CCCEEECHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 4--------------5----789999999999999887935778-98275576999999973899999999999876425
Q ss_pred -CCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCC------CCCCCCCCCCC-------HHHHHHHHHHHHHCCCCCCC
Q ss_conf -99898999850793478796781489999998503------99988898989-------27999999999874988899
Q 000324 1024 -MGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDR------VPIPVKESLEE-------PSAKINVLLQAYISQLKLEG 1089 (1665)
Q Consensus 1024 -~~~~~ll~ils~s~EF~~i~vR~~E~~eL~~L~~~------~p~p~~~~~~~-------~~~Kv~iLLqa~isr~~l~~ 1089 (1665)
.+..++|.++|++.||.++++|++|+.+|.+++.. .++|++.+.+. +..|+++|||+||+|.+++.
T Consensus 509 ~~~~~~~l~i~~~~~e~~~i~~r~~e~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~~~l~~ 588 (720)
T 2zj8_A 509 DPNPIGIFHLISLTPDITPFNYSKREFERLEEEYYEFKDRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGE 588 (720)
T ss_dssp SCCHHHHHHHHHTSTTCCCCCCCHHHHHHHHHHHHHHGGGCSSCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred CCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 89888999975058532126637778999999998563201236553344420135567777999999999981798788
Q ss_pred ----CC-CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCC-
Q ss_conf ----83-030199999929999999999999729999999999999998725679998633469999999999991898-
Q 000324 1090 ----LS-LTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF- 1163 (1665)
Q Consensus 1090 ----~~-L~~D~~~I~q~a~Rl~ral~ei~~~~~~~~~a~~~l~l~k~i~q~~W~~~~pL~Q~~~i~~~~i~~le~~~~- 1163 (1665)
|+ +.+|+.+++++|.||++|+++||...||...+..+..|+|||.+++|+..+||.|+||++...+++|.+.++
T Consensus 589 i~~~~~~~~gdl~~~~~~a~~l~~a~~~i~~~~g~~~~~~~l~~l~~rl~~gv~~e~~~L~qlp~v~~~rar~L~~~G~~ 668 (720)
T 2zj8_A 589 IVEKYSVEPGDIYRIVETAEWLVYSLKEIAKVLGAYEIVDYLETLRVRVKYGIREELIPLMQLPLVGRRRARALYNSGFR 668 (720)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHTCCGGGGGGTTSTTCCHHHHHHHHTTTCC
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHCCCC
T ss_conf 88883887676999999999999999999997496999999999999997589801003562799989999999976999
Q ss_pred CCHHHCCCCHHHHHHHHCCCHHHH----HHHHHHHCCCC
Q ss_conf 711001589478733313832268----99999840894
Q 000324 1164 AWERYYDLSPQELGELIRFPKMGR----TLHKFVHQFPK 1198 (1665)
Q Consensus 1164 ~~~~l~~l~~~el~~ll~~~~~~~----~i~~~~~~~P~ 1198 (1665)
++.++.+++++++..+ +++|+ .+..++.++|.
T Consensus 669 s~~dl~~~~~~~l~~~---~~~~~~i~~~~~~~~~~~~~ 704 (720)
T 2zj8_A 669 SIEDISQARPEELLKI---EGIGVKTVEAIFKFLGKNVK 704 (720)
T ss_dssp SHHHHHTCCHHHHHTS---TTCCHHHHHHHHHHHC----
T ss_pred CHHHHHHCCHHHHHHH---HHHHHHHHHHHHHHCCCCCC
T ss_conf 8999984899999874---74899999999986332233
No 6
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=1.00 E-value=1 Score=498.91 Aligned_cols=308 Identities=24% Similarity=0.392 Sum_probs=289.8
Q ss_pred CCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC-CCCCC
Q ss_conf 89422593899999825898889999974199999898999850793478796781489999998503999888-98989
Q 000324 991 SGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVK-ESLEE 1069 (1665)
Q Consensus 991 ~~~~~~t~lG~i~s~~yi~~~T~~~~~~~l~~~~~~~~ll~ils~s~EF~~i~vR~~E~~eL~~L~~~~p~p~~-~~~~~ 1069 (1665)
.|.+.+|++|||||+|||+|.||+.|+..+++.++..++|+++|.|.||+++++|++|+.+|.+|.+++|+|++ +.+++
T Consensus 10 ~g~l~~t~lGriaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~EF~~i~vR~~E~~~l~~L~~~~~~~~~~~~~~~ 89 (339)
T 2q0z_X 10 HMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFND 89 (339)
T ss_dssp ---------------------------------CCHHHHHHHHHTSGGGTTCCCCTTCHHHHHHHHHHSSSCCSSCCTTC
T ss_pred CCEECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 76463684789999978798899999997152699889999971538775277784449999999985877566678998
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 27999999999874988899830301999999299999999999997299999999999999987256799986334699
Q 000324 1070 PSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNG 1149 (1665)
Q Consensus 1070 ~~~Kv~iLLqa~isr~~l~~~~L~~D~~~I~q~a~Rl~ral~ei~~~~~~~~~a~~~l~l~k~i~q~~W~~~~pL~Q~~~ 1149 (1665)
|+.|+|+||||||||++++ .+|.+|+.+|+++|.||++||+||++.+||+.++.++++|||||+||+|+.++||+||||
T Consensus 90 ~~~K~~lLLqa~isr~~l~-~~l~~D~~~V~~~a~RLl~al~di~~~~g~~~~~~~~l~L~q~i~q~~w~~~~pL~Qlp~ 168 (339)
T 2q0z_X 90 PHVKTNLLLQAHLSRMQLS-AELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPH 168 (339)
T ss_dssp HHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTCCTTSCGGGGSTT
T ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCEECCCC
T ss_conf 8999999999997478897-689999999999999999999999997688999999999999999743899995006999
Q ss_pred CCHHHHHHHHHCCC-CCHHHCCCCHHHHHHHHCCC-HHHHHHHHHHHCCCCCEEEEEEEE---C-CCCEEEEEEEECCCC
Q ss_conf 99999999991898-71100158947873331383-226899999840894019899952---2-575389999981597
Q 000324 1150 IPNEILMKLEKKDF-AWERYYDLSPQELGELIRFP-KMGRTLHKFVHQFPKLILAAHVQP---I-TRTVLKVELTITPDF 1223 (1665)
Q Consensus 1150 i~~~~i~~le~~~~-~~~~l~~l~~~el~~ll~~~-~~~~~i~~~~~~~P~l~i~~~v~p---i-t~~~l~v~l~i~~~~ 1223 (1665)
++++++++++++++ +++++.++++++++.+++++ .+++++++++++||++++++.++| | +++.+++.+++++++
T Consensus 169 i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~l~~~~~~~i~~~~~~~P~l~v~~~v~~~~~i~~~~~~~l~v~l~~~~ 248 (339)
T 2q0z_X 169 FTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREE 248 (339)
T ss_dssp CCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHHCCCHHHHHHHHHHHTTSCCEEEEEEETTGGGCBTTSEEEEEEEEEECS
T ss_pred CCHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCEEEEEEEEECC
T ss_conf 79999999986599979999749999999997899999999999998689679999981686123897089999999888
Q ss_pred CCCCCCCCCC------CCEEEEEEECCCCEEEEEEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 4477888875------6489999917998488776554331233465067774136799999338999504655666644
Q 000324 1224 LWDDKVHGYV------EPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVL 1297 (1665)
Q Consensus 1224 ~w~~~~h~~~------~~~wi~v~d~~~~~il~~~~~~l~~~~~~~~~~~~f~vp~~~p~~~~~~i~viSD~wlg~e~~~ 1297 (1665)
.|+..+|+|. |+||+||+|++++.|++++++.+++. ..+.++|++| +||+++|+++++||+|+|+|.+.
T Consensus 249 ~~~~~v~aP~fp~~k~e~wwi~v~d~~~~~ll~~~r~~l~~~---~~~~l~f~~P--~~g~~~~~v~~vSD~ylG~D~~~ 323 (339)
T 2q0z_X 249 EVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQK---AKVKLDFVAP--ATGAHNYTLYFMSDAYMGCDQEY 323 (339)
T ss_dssp SCCSSCCCTTCSSCCCCCEEEEEEETTTTEEEEEEEECCSSE---EEEEEEEECC--SSEEEEEEEEEEESSCSSCCEEE
T ss_pred CCCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCC---EEEEEEEECC--CCCCEEEEEEEECCCCCCCCEEE
T ss_conf 778724589899888775899999889998999999822664---4899999778--89981399999744666764599
Q ss_pred CCCCCCC
Q ss_conf 4333445
Q 000324 1298 PVSFRHL 1304 (1665)
Q Consensus 1298 ~vsl~~l 1304 (1665)
++++.-.
T Consensus 324 ~i~~~v~ 330 (339)
T 2q0z_X 324 KFSVDVK 330 (339)
T ss_dssp EEEEEEB
T ss_pred EEEEEEE
T ss_conf 9999970
No 7
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=1.00 E-value=1 Score=490.55 Aligned_cols=307 Identities=23% Similarity=0.366 Sum_probs=283.8
Q ss_pred CCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC--CCCC
Q ss_conf 78942259389999982589888999997419999989899985079347879678148999999850399988--8989
Q 000324 990 KSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPV--KESL 1067 (1665)
Q Consensus 990 ~~~~~~~t~lG~i~s~~yi~~~T~~~~~~~l~~~~~~~~ll~ils~s~EF~~i~vR~~E~~eL~~L~~~~p~p~--~~~~ 1067 (1665)
.++.+.+|++|+|||+|||+|.||+.|+..+++.++..++|+++|.|.||+.+++|++|+.+|.+|.+.+|+|+ ++++
T Consensus 5 ~~~~l~~t~lG~iaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~~~~~~~~~~~ 84 (328)
T 3im1_A 5 ATEIISTLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRALLVKLSKRLPLRFPEHTSS 84 (328)
T ss_dssp CCCCCTTSSSCBCCCCCCCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGGGSCCCTTHHHHHHHHHTTSSSCCCTTSCS
T ss_pred CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 79876678166999987878999999999733248999999984467888746358206899999997688766666778
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 89279999999998749888998303019999992999999999999972999999999999999872567999863346
Q 000324 1068 EEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQF 1147 (1665)
Q Consensus 1068 ~~~~~Kv~iLLqa~isr~~l~~~~L~~D~~~I~q~a~Rl~ral~ei~~~~~~~~~a~~~l~l~k~i~q~~W~~~~pL~Q~ 1147 (1665)
++|+.|+|+||||||||+++++ +|.+|+.+|+++|.||++||+||+..+||+. +.++++|||||+||+|+.++||+||
T Consensus 85 ~~~~~K~~lLLqa~isr~~l~~-~l~~D~~~V~~~a~rLl~al~di~~~~g~~~-~~~~l~L~q~i~q~~w~~~~pL~Ql 162 (328)
T 3im1_A 85 GSVSFKVFLLLQAYFSRLELPV-DFQNDLKDILEKVVPLINVVVDILSANGYLN-ATTAMDLAQMLIQGVWDVDNPLRQI 162 (328)
T ss_dssp SSHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTBTT-HHHHHHHHHHHHHTSCTTSCGGGGS
T ss_pred CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHCCCCCCCEECC
T ss_conf 9878999999999977999976-8999999999999999999999997289389-9999999999995369999961579
Q ss_pred CCCCHHHHHHHHHCCC-CCHHHCCCCHHHHHHHHCCC-HHHHHHHHHHHCCCCCEEEEEEEE---C-CCCEEEEEEEECC
Q ss_conf 9999999999991898-71100158947873331383-226899999840894019899952---2-5753899999815
Q 000324 1148 NGIPNEILMKLEKKDF-AWERYYDLSPQELGELIRFP-KMGRTLHKFVHQFPKLILAAHVQP---I-TRTVLKVELTITP 1221 (1665)
Q Consensus 1148 ~~i~~~~i~~le~~~~-~~~~l~~l~~~el~~ll~~~-~~~~~i~~~~~~~P~l~i~~~v~p---i-t~~~l~v~l~i~~ 1221 (1665)
|||+++++++++++++ +++++.++++++++++++.+ ++++++++++++||++++++.+++ | +++.+++.|+++|
T Consensus 163 p~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~~~P~l~v~~~v~~~~~i~~~~~~~l~v~l~~ 242 (328)
T 3im1_A 163 PHFNNKILEKCKEINVETVYDIMALEDEERDEILTLTDSQLAQVAAFVNNYPNVELTYSLNNSDSLISGVKQKITIQLTR 242 (328)
T ss_dssp TTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEETTGGGCCTTSEEEEEEEEEE
T ss_pred CCCCHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEEEEEEEEE
T ss_conf 99898999998757998899986089999986728999999999999986898799999658773168972899999998
Q ss_pred CCCCCC-C------CCCCCCCEEEEEEECCCCEEEEEEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 974477-8------888756489999917998488776554331233465067774136799999338999504655666
Q 000324 1222 DFLWDD-K------VHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQ 1294 (1665)
Q Consensus 1222 ~~~w~~-~------~h~~~~~~wi~v~d~~~~~il~~~~~~l~~~~~~~~~~~~f~vp~~~p~~~~~~i~viSD~wlg~e 1294 (1665)
+|.|++ . .|++.|+||+||+|.++++|++.+++.+.+. ..++.++|.+|. +|+++|+++++||+|+|+|
T Consensus 243 ~~~~~~~~~~ap~fp~~k~e~ww~~v~d~~~~~l~~~kr~~~~~~--~~~~~~~f~~p~--~g~~~~~v~~vsD~ylG~d 318 (328)
T 3im1_A 243 DVEPENLQVTSEKYPFDKLESWWLVLGEVSKKELYAIKKVTLNKE--TQQYELEFDTPT--SGKHNLTIWCVCDSYLDAD 318 (328)
T ss_dssp SSCCSCCBCCCSSCCBCCBCCEEEEEEEGGGTEEEEEEEECCCSS--EEEEEEEEECCC--SEEEEEEEEEEESSCSSCC
T ss_pred CCCCCCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCC--CEEEEEEEECCC--CCCEEEEEEEEECCCCCEE
T ss_conf 888878717789999986478899999888996999853314666--517999997689--9857899999956876503
Q ss_pred CCCCCCCC
Q ss_conf 64443334
Q 000324 1295 TVLPVSFR 1302 (1665)
Q Consensus 1295 ~~~~vsl~ 1302 (1665)
++.++.+.
T Consensus 319 ~~~~~~l~ 326 (328)
T 3im1_A 319 KELSFEIN 326 (328)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
T ss_conf 79879888
No 8
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=432.87 Aligned_cols=396 Identities=26% Similarity=0.362 Sum_probs=296.2
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 99999999999999988389909998248986099999999999984289999998997099999354878999999998
Q 000324 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1665)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP~kaLa~q~~~~~~ 571 (1665)
++..|+++|.++++.+..+ .+++++||||||||++|+++++..+.. +.+++|++|+++|+.|+++.|.
T Consensus 181 ~~f~ltp~Q~~AI~~i~~g-~dvLV~ApTGSGKTlva~l~i~~~l~~-----------g~rvlvl~PtraLa~Q~~~~l~ 248 (1108)
T 3l9o_A 181 YPFTLDPFQDTAISCIDRG-ESVLVSAHTSAGKTVVAEYAIAQSLKN-----------KQRVIYTSPIKALSNQKYRELL 248 (1108)
T ss_dssp CSSCCCHHHHHHHHHHTTT-CCEEEECCSSSHHHHHHHHHHHHHHHT-----------TCEEEEEESSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCC-CCEEEECCCCCCHHHHHHHHHHHHHHC-----------CCEEEEECCCHHHHHHHHHHHH
T ss_conf 7999999999999999769-988998899997199999999999755-----------9749999084999999999999
Q ss_pred HHHCCCCCEEEEEECCCCCCHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCC-CCCHHHHHHHHHH
Q ss_conf 731038949999978886367644036499927235999983149986445400899925310016-8804899999999
Q 000324 572 NRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVART 650 (1665)
Q Consensus 572 ~~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEvH~l~d-~rg~~le~iv~r~ 650 (1665)
..++ .|+.++|+.+... +++|+|+|||++........ ..+..+++|||||||++.+ +||..++.++..
T Consensus 249 ~~~~----~VglltGd~~~~~----~~~IlV~Tpe~L~~~L~~~~--~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~- 317 (1108)
T 3l9o_A 249 AEFG----DVGLMTGDITINP----DAGCLVMTTEILRSMLYRGS--EVMREVAWVIFDEVHYMRDKERGVVWEETIIL- 317 (1108)
T ss_dssp HHTS----SEEEECSSCBCCC----SCSEEEEEHHHHHHHHHHCS--SHHHHEEEEEEETGGGTTSHHHHHHHHHHHHH-
T ss_pred HHHC----CCCEEECCCCCCC----CCCEEEECHHHHHHHHHCCC--CCCCCCCEEEEHHHHHCCCCCHHHHHHHHHHH-
T ss_conf 9828----9218967652689----99989967699999997475--43223789987002120230068999999986-
Q ss_pred HHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEEEEEC---------CCH--HHHHH-H
Q ss_conf 99985116870099993337896889999700246856983499754232289985203---------763--57889-8
Q 000324 651 VRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQV---------KKP--LQRFQ-L 718 (1665)
Q Consensus 651 ~~~~~~~~~~~riv~lSATl~n~~dva~~l~~~~~~~~~~f~~~~rp~~l~~~~~~~~~---------~~~--~~~~~-~ 718 (1665)
.+..+++|+||||+||..+++.|++.........+....+|+|+..+++.... ... ...+. .
T Consensus 318 ------l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~ 391 (1108)
T 3l9o_A 318 ------LPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKA 391 (1108)
T ss_dssp ------SCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHH
T ss_pred ------CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEECCCCCHHHHHHHHH
T ss_conf ------47776499972888987999999985158982798347875540689862477642564144220115668999
Q ss_pred H---------------------------------HHHHHHHH--HHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 7---------------------------------79999999--998389829999658267999999999974101322
Q 000324 719 M---------------------------------NDLCYEKV--VAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTL 763 (1665)
Q Consensus 719 l---------------------------------~~~~~~~i--~~~~~~~~vLIFv~sr~~~~~la~~L~~~~~~~~~l 763 (1665)
+ ...++..+ +...+.+++||||++++.|..++..|...+......
T Consensus 392 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e 471 (1108)
T 3l9o_A 392 MASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDE 471 (1108)
T ss_dssp HTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC--
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99987541133211234332222344555443205689999999996289988999584878999999998646997778
Q ss_pred CCCCCC-CCHHHHHHHH-HHHCCCCCHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEE
Q ss_conf 445556-8013999985-21013641034210785799368999788999999970999776874300002458986289
Q 000324 764 GRFLKE-DSVSREILQS-HTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTV 841 (1665)
Q Consensus 764 ~~~~~~-~~~~~~~l~~-~~~~~~~~~l~~ll~~gv~~~Hagl~~~dR~~v~~~F~~g~i~VLVaT~tla~GVnlP~~~v 841 (1665)
...+.. -......+.. .........+..++..||++|||+|++.+|..+++.|++|.++|||||+++++|||+|++++
T Consensus 472 ~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~ 551 (1108)
T 3l9o_A 472 KEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTV 551 (1108)
T ss_dssp --CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEE
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCEE
T ss_conf 99999999988750464433005688787765157565258998999999999986799849998727765778787459
Q ss_pred EEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCC-CHHHHHHHHC-CCCCCCCCHHHHHHHHHHH
Q ss_conf 996350137999975438998898431236899999822899990887-3899998420-8876320004756999999
Q 000324 842 IIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS-ELRYYLSLMN-QQLPIESQFVSKLADQLNA 918 (1665)
Q Consensus 842 VI~~t~~yd~~~g~~~~ls~~~~~Qr~GRAGR~g~d~~G~~iil~~~~-~~~~y~~ll~-~~~piES~l~~~l~d~lna 918 (1665)
||+++.+|++.. ..++|..+|+||+|||||.|.+..|.++++++.. +...+..++. ...|+.|+|.......+|.
T Consensus 552 VI~~~~~~d~~~--~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~~~~L~S~f~~~y~~ilnl 628 (1108)
T 3l9o_A 552 VFTSVRKWDGQQ--FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNL 628 (1108)
T ss_dssp EESCSEEESSSC--EEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_pred EEECCCCCCCCC--CCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 996576668644--56389999997636347789998559999955886899999996199963122657859999999
No 9
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=421.62 Aligned_cols=386 Identities=25% Similarity=0.369 Sum_probs=291.1
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 99999999999999988389909998248986099999999999984289999998997099999354878999999998
Q 000324 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1665)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP~kaLa~q~~~~~~ 571 (1665)
+| .|+++|.++++.+..+ ++++++||||||||++|.++++..+.. +.+++|++|+++|+.|+++.|.
T Consensus 84 ~f-~L~~~Q~eai~~l~~g-~~vLV~apTGSGKTlva~lai~~~l~~-----------g~rvL~l~PtkaLa~Q~~~~l~ 150 (1010)
T 2xgj_A 84 PF-TLDPFQDTAISCIDRG-ESVLVSAHTSAGKTVVAEYAIAQSLKN-----------KQRVIYTSPIKALSNQKYRELL 150 (1010)
T ss_dssp SS-CCCHHHHHHHHHHHHT-CEEEEECCTTSCHHHHHHHHHHHHHHT-----------TCEEEEEESSHHHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHCC-CCEEEECCCCCCHHHHHHHHHHHHHCC-----------CCEEEEECCHHHHHHHHHHHHH
T ss_conf 99-9989999999999739-989998899998099999999997515-----------9869998795999999999999
Q ss_pred HHHCCCCCEEEEEECCCCCCHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCC-CCCHHHHHHHHHH
Q ss_conf 731038949999978886367644036499927235999983149986445400899925310016-8804899999999
Q 000324 572 NRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVART 650 (1665)
Q Consensus 572 ~~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEvH~l~d-~rg~~le~iv~r~ 650 (1665)
..++ .|+.++||..... .++|+|+|||++..+..+.. ..+..+++|||||+|.+.+ .||..++.++..
T Consensus 151 ~~~~----~vglltGd~~~~~----~~~IvV~Tpe~L~~~L~~~~--~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~- 219 (1010)
T 2xgj_A 151 AEFG----DVGLMTGDITINP----DAGCLVMTTEILRSMLYRGS--EVMREVAWVIFDEVHYMRDKERGVVWEETIIL- 219 (1010)
T ss_dssp HHHS----CEEEECSSCEECT----TCSEEEEEHHHHHHHHHHTC--TTGGGEEEEEEETGGGGGCTTTHHHHHHHHHH-
T ss_pred HHHC----CEEEEECCCCCCC----CCCEEEECHHHHHHHHHCCC--CHHHCCCEEEEECHHHHCCCCHHHHHHHHHHH-
T ss_conf 9718----7789968876689----99999970999999997084--01202788997044352354235999999985-
Q ss_pred HHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEEEEE---------CCCH--HHHH---
Q ss_conf 9998511687009999333789688999970024685698349975423228998520---------3763--5788---
Q 000324 651 VRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQ---------VKKP--LQRF--- 716 (1665)
Q Consensus 651 ~~~~~~~~~~~riv~lSATl~n~~dva~~l~~~~~~~~~~f~~~~rp~~l~~~~~~~~---------~~~~--~~~~--- 716 (1665)
.+..+++|+||||++|..+++.|+..........+....+|+|+.++++... .... ...+
T Consensus 220 ------l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (1010)
T 2xgj_A 220 ------LPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKA 293 (1010)
T ss_dssp ------SCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHH
T ss_pred ------CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEECCCCCCCHHHHHHH
T ss_conf ------68888699980888988999999986348974898258876650699995487651464355433134778999
Q ss_pred -----------------------------------HHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCC
Q ss_conf -----------------------------------987799999999983898299996582679999999999741013
Q 000324 717 -----------------------------------QLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALEND 761 (1665)
Q Consensus 717 -----------------------------------~~l~~~~~~~i~~~~~~~~vLIFv~sr~~~~~la~~L~~~~~~~~ 761 (1665)
..+.. +... +...+..++||||++++.|..++..|...+....
T Consensus 294 ~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~-l~~~-l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~ 371 (1010)
T 2xgj_A 294 MASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYK-IVKM-IWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSD 371 (1010)
T ss_dssp HHTCC------------------------------CHHHH-HHHH-HHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCH
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH-HHHH-HHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCH
T ss_conf 9997543033543222345544455566544433678999-9999-9846999889997889999999999983789976
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCC--------CCCHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCC
Q ss_conf 22445556801399998521013--------6410342107857993689997889999999709997768743000024
Q 000324 762 TLGRFLKEDSVSREILQSHTDMV--------KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWG 833 (1665)
Q Consensus 762 ~l~~~~~~~~~~~~~l~~~~~~~--------~~~~l~~ll~~gv~~~Hagl~~~dR~~v~~~F~~g~i~VLVaT~tla~G 833 (1665)
.- ...-........... ....+..++..||++|||||++.+|..+++.|++|.++|||||+++++|
T Consensus 372 ~e------~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~G 445 (1010)
T 2xgj_A 372 DE------KEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIG 445 (1010)
T ss_dssp HH------HHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGS
T ss_pred HH------HHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHCC
T ss_conf 77------999999999998743643311025799999873782677788999999999999866997299981276525
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCC-CHHHHHHHH-CCCCCCCCCHHHH
Q ss_conf 58986289996350137999975438998898431236899999822899990887-389999842-0887632000475
Q 000324 834 VNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS-ELRYYLSLM-NQQLPIESQFVSK 911 (1665)
Q Consensus 834 VnlP~~~vVI~~t~~yd~~~g~~~~ls~~~~~Qr~GRAGR~g~d~~G~~iil~~~~-~~~~y~~ll-~~~~piES~l~~~ 911 (1665)
||+|++++||++...||+.. +.++++.+|+||+|||||.|.|..|.+++++++. +...+..++ ....|++|+|...
T Consensus 446 IDiP~~~vVI~~~~kfd~~~--~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~~~~~l~s~f~~~ 523 (1010)
T 2xgj_A 446 LNMPAKTVVFTSVRKWDGQQ--FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLG 523 (1010)
T ss_dssp TTCCBSEEEESCSEEECSSC--EEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSCCCCCCCCCCCCC
T ss_pred CCCCCCEEEEECCCCCCCCC--CCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 78888649996773037767--7518999996764210568899855999997998799999999848984100466776
Q ss_pred HHHHHH
Q ss_conf 699999
Q 000324 912 LADQLN 917 (1665)
Q Consensus 912 l~d~ln 917 (1665)
+...+|
T Consensus 524 ~~~iln 529 (1010)
T 2xgj_A 524 YNMILN 529 (1010)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
No 10
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=1.00 E-value=1 Score=404.67 Aligned_cols=370 Identities=19% Similarity=0.248 Sum_probs=278.4
Q ss_pred CCCCCCCCCHHHHHHC--CCCCCCCHHHHHHHHHHHCC-CCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 7533689993358521--89999999999999998838-99099982489860999999999999842899999989970
Q 000324 475 KLIKISEMPEWAQPAF--KGMTQLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNY 551 (1665)
Q Consensus 475 ~l~~i~~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~-~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~ 551 (1665)
.+.....|+++....+ .||..|+++|.++++.++.+ +.+++++||||+|||++|++|+++.+....... ..++
T Consensus 72 ~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~----~~~~ 147 (563)
T 3i5x_A 72 SLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDS----QYMV 147 (563)
T ss_dssp HHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSS----TTSC
T ss_pred HHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCC----CCCE
T ss_conf 875517889999999997799999999999999996679972999878999742999999999987423466----6770
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHCC----CCCEEEEEECCCCCCHHH----HCCCCEEEECHHHHHHHHHHCCCCCCCCC
Q ss_conf 9999935487899999999873103----894999997888636764----40364999272359999831499864454
Q 000324 552 KIVYVAPMKALVAEVVGNLSNRLQM----YDVKVRELSGDQTLTRQQ----IEETQIIVTTPEKWDIITRKSGDRTYTQL 623 (1665)
Q Consensus 552 kii~iaP~kaLa~q~~~~~~~~~~~----~gi~V~~ltGd~~~~~~~----~~~~~IiV~TPekld~l~r~~~~~~~l~~ 623 (1665)
++||++|+++|+.|+++.+.+.+.. .+..+..++|+....... ...++|+|+||+++..+.++.. ...++.
T Consensus 148 ~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~-~~~~~~ 226 (563)
T 3i5x_A 148 KAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS-NKFFRF 226 (563)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH-HHHCTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHCC-CCCCCC
T ss_conf 4999828499999999999999742356676049999899077999999746899989989299999998344-111255
Q ss_pred EEEEEEECCCCCCC-CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCH-HHHHHHHHCCCCCCEEEEC--CCCCC--
Q ss_conf 00899925310016-880489999999999985116870099993337896-8899997002468569834--99754--
Q 000324 624 VKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY-EDVALFLRVNLEKGLFYFD--NSYRP-- 697 (1665)
Q Consensus 624 v~liIiDEvH~l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATl~n~-~dva~~l~~~~~~~~~~f~--~~~rp-- 697 (1665)
+++||+||||++.+ ++++.++.++..+..........+|+++||||+++. ..++.++...+ ....+. ....+
T Consensus 227 ~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~ 304 (563)
T 3i5x_A 227 VDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKK--ECLFLDTVDKNEPEA 304 (563)
T ss_dssp CCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSS--EEEEEESSCSSSCSS
T ss_pred CEEEEEECHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCC--CEEEEECCCCCCCCC
T ss_conf 109998377877505509999999986111035676675599998168878999999863887--617874157777552
Q ss_pred -CCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf -2322899852037635788987799999999983898299996582679999999999741013224455568013999
Q 000324 698 -VPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREI 776 (1665)
Q Consensus 698 -~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLIFv~sr~~~~~la~~L~~~~~~~~~l~~~~~~~~~~~~~ 776 (1665)
..+.+.+.... . ...........+...+.....++++||||++++.+..++..|......
T Consensus 305 ~~~~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~----------------- 365 (563)
T 3i5x_A 305 HERIDQSVVISE-K-FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKK----------------- 365 (563)
T ss_dssp CTTEEEEEEEES-S-TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTT-----------------
T ss_pred CCCCCEEEEECC-H-HHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCCC-----------------
T ss_conf 103754899872-2-676699999999999861378872899948179999999999874247-----------------
Q ss_pred HHHHHHCCCCCHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 98521013641034210785799368999788999999970999776874300002458986289996350137999975
Q 000324 777 LQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAW 856 (1665)
Q Consensus 777 l~~~~~~~~~~~l~~ll~~gv~~~Hagl~~~dR~~v~~~F~~g~i~VLVaT~tla~GVnlP~~~vVI~~t~~yd~~~g~~ 856 (1665)
...+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ |++|.
T Consensus 366 -----------------~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~~~p~--- 421 (563)
T 3i5x_A 366 -----------------DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ----IGVPS--- 421 (563)
T ss_dssp -----------------TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE----ESCCS---
T ss_pred -----------------CCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCEEEE----ECCCC---
T ss_conf -----------------960898258899999999999986689988998366646898426777999----79999---
Q ss_pred CCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHHHHC
Q ss_conf 4389988984312368999998228999908873899998420
Q 000324 857 TELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMN 899 (1665)
Q Consensus 857 ~~ls~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~ 899 (1665)
+..+|+||+|||||.| ..|.+++++...+..++..+..
T Consensus 422 ---s~~~y~Qr~GRagR~g--~~g~~i~~~~~~e~~~~~~l~~ 459 (563)
T 3i5x_A 422 ---ELANYIHRIGRTARSG--KEGSSVLFICKDELPFVRELED 459 (563)
T ss_dssp ---STTHHHHHHTTSSCTT--CCEEEEEEEEGGGHHHHHHHHH
T ss_pred ---CHHHHHHHCCCCCCCC--CCCEEEEEECHHHHHHHHHHHH
T ss_conf ---6424646427235699--9853999975048899999999
Done!