Query 000325
Match_columns 1665
No_of_seqs 443 out of 1659
Neff 4.0
Searched_HMMs 29240
Date Tue Mar 26 17:34:39 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000325.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_103-106//hhsearch_pdb/000325hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5n_A E3 ubiquitin-protein li 1.0 1 1 140.2 4.4 137 369-512 2-157 (207)
2 3o36_A Transcription intermedi 1.0 1 1 136.2 4.3 133 372-512 2-156 (184)
3 3kv4_A PHD finger protein 8; e 1.0 1 1 131.5 -1.0 60 1308-1367 2-61 (447)
4 3kv5_D JMJC domain-containing 1.0 1 1 129.2 0.1 62 1307-1368 33-94 (488)
5 2ro1_A Transcription intermedi 1.0 1 1 127.1 6.4 141 374-521 2-159 (189)
6 3kqi_A GRC5, PHD finger protei 1.0 1 1 117.0 0.8 60 1307-1366 6-65 (75)
7 1wep_A PHF8; structural genomi 1.0 1 1 116.0 3.8 62 1305-1366 6-67 (79)
8 3pur_A Lysine-specific demethy 1.0 1 1 115.1 2.9 59 1311-1369 40-101 (528)
9 2xb1_A Pygopus homolog 2, B-ce 1.0 1 1 109.9 -0.1 57 1310-1366 3-65 (105)
10 2vpb_A Hpygo1, pygopus homolog 1.0 1 1 109.5 -1.6 55 1307-1361 5-65 (65)
No 1
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=1.00 E-value=1 Score=140.22 Aligned_cols=137 Identities=26% Similarity=0.489 Sum_probs=94.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCH
Q ss_conf 6533210111003467101578887423222226666899999831333742546873234676-----66650033341
Q 000325 369 DVDGNGDECRICGMDGTLLCCDGCPSAYHTRCIGVSKMYVPEGSWYCPECAINKVGPIVTIGTS-----LRGAELFGIDL 443 (1665)
Q Consensus 369 e~d~ndd~C~VC~~gG~LLcCD~Cp~afHl~CL~PpL~~iPeGeW~Cp~C~~~~~~p~~E~g~~-----~rg~EllGcD~ 443 (1665)
+++.++++|.+|+++|+|||||+|+++||+.|++|++..+|+|+|+|+.|..... ++.+.++. ..+...-+...
T Consensus 2 ~~d~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~-~~~~~~c~~~~~s~k~~~~~~ls~ 80 (207)
T 3u5n_A 2 DDDPNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK-PEVEYDCDNLQHSKKGKTAQGLSP 80 (207)
T ss_dssp -CCSSCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS-CSSCCSCC----------CCSSCH
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCEECCCC-CCCCCCCCCCCCHHHHHHHHCCCH
T ss_conf 8788889898889999367769999843871589998888998878684268664-664323333331011223310569
Q ss_pred HHHHHHHHCCCCEEE---------C-CCCCCHHHCCCCC----CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 555777221542051---------2-5789222002358----7776789998701441023375799999998427666
Q 000325 444 YERVFLGTCNHLLVL---------N-ASSNTEQYIRYYN----PIDIPKVLQALLSSVQHVSLYLGICKAILHYWDIPES 509 (1665)
Q Consensus 444 cgR~Yh~kCerLll~---------~-~s~D~e~e~~YYs----t~DL~~Vl~vLy~sDih~~~y~eI~~~I~~y~~ip~N 509 (1665)
..+ ..|++++.. + ..++ .....||. ||||..|.++|.... ...|..+..++.+...|+.|
T Consensus 81 ~~~---~~c~~il~~l~~~~~s~~F~~Pv~-~~~pdY~~iIk~PmdL~tI~~kl~~~~--~~~Y~s~~~f~~Dv~li~~N 154 (207)
T 3u5n_A 81 VDQ---RKCERLLLYLYCHELSIEFQEPVP-ASIPNYYKIIKKPMDLSTVKKKLQKKH--SQHYQIPDDFVADVRLIFKN 154 (207)
T ss_dssp HHH---HHHHHHHHHHHTSTTCGGGSSCCC-TTSTTHHHHCSSCCCHHHHHHHHSTTS--TTCCSSHHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHHCCCHHHHHCCCC-HHHCCHHHHHCCCCCHHHHHHHHHCCC--CCCCCCHHHHHHHHHHHHHH
T ss_conf 999---999999999984642341221588-665007677078637999999985536--88869999999999999999
Q ss_pred CCC
Q ss_conf 366
Q 000325 510 VVP 512 (1665)
Q Consensus 510 L~n 512 (1665)
...
T Consensus 155 a~~ 157 (207)
T 3u5n_A 155 CER 157 (207)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 2
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=1.00 E-value=1 Score=136.24 Aligned_cols=133 Identities=25% Similarity=0.523 Sum_probs=92.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCC-CCCCCH
Q ss_conf 321011100346710157888742322222666689999983133374254687323467-------666650-033341
Q 000325 372 GNGDECRICGMDGTLLCCDGCPSAYHTRCIGVSKMYVPEGSWYCPECAINKVGPIVTIGT-------SLRGAE-LFGIDL 443 (1665)
Q Consensus 372 ~ndd~C~VC~~gG~LLcCD~Cp~afHl~CL~PpL~~iPeGeW~Cp~C~~~~~~p~~E~g~-------~~rg~E-llGcD~ 443 (1665)
.|+++|.||+++|+|||||+|+++||+.|++|++..+|+|+|+|+.|..... +..++.+ ..+..+ ..+...
T Consensus 2 ~~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~-~~~e~dc~~~~~~s~~~~~~~~~~l~~ 80 (184)
T 3o36_A 2 PNEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK-PEVEYDCDAPSHNSEKKKTEGLVKLTP 80 (184)
T ss_dssp CSCSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS-CSSCCGGGCCSSCTTTSCCTTCCCCCH
T ss_pred CCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 9999541179999056629999530811368987879998878925568655-555334344443442110001123698
Q ss_pred HHHHHHHHCCCCEEE---------C-CCCCCHHHCCCCC----CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 555777221542051---------2-5789222002358----7776789998701441023375799999998427666
Q 000325 444 YERVFLGTCNHLLVL---------N-ASSNTEQYIRYYN----PIDIPKVLQALLSSVQHVSLYLGICKAILHYWDIPES 509 (1665)
Q Consensus 444 cgR~Yh~kCerLll~---------~-~s~D~e~e~~YYs----t~DL~~Vl~vLy~sDih~~~y~eI~~~I~~y~~ip~N 509 (1665)
..+ ..|++++.. + ..++ .....||. ||||..|.++|.... ..|..+.+++.++..|+.|
T Consensus 81 ~~~---~~c~~il~~l~~~~~s~~F~~Pv~-~~~pdY~~iIk~PmdL~tI~~kl~~~~---~~Y~s~~ef~~Dv~li~~N 153 (184)
T 3o36_A 81 IDK---RKCERLLLFLYCHEMSLAFQDPVP-LTVPDYYKIIKNPMDLSTIKKRLQEDY---SMYSKPEDFVADFRLIFQN 153 (184)
T ss_dssp HHH---HHHHHHHHHHHHSTTCHHHHSCCC-TTSTTHHHHCSSCCCHHHHHHHHHSTT---CSCCSHHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHHCHHHHHHCCCCC-CCCCCHHHHCCCCCCHHHHHHHHHHCC---CCCCCHHHHHHHHHHHHHH
T ss_conf 999---999999999984602333236433-679856553588879999999998467---7899999999999999999
Q ss_pred CCC
Q ss_conf 366
Q 000325 510 VVP 512 (1665)
Q Consensus 510 L~n 512 (1665)
...
T Consensus 154 a~~ 156 (184)
T 3o36_A 154 CAE 156 (184)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 3
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=1.00 E-value=1 Score=131.51 Aligned_cols=60 Identities=37% Similarity=0.835 Sum_probs=55.0
Q ss_pred CCCCEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 999701015889899966286589986002544535733668964056068543488888
Q 000325 1308 HLEPVCDLCKQPYNSNLMYIHCETCQRWFHADAVELEESKLSDVVGFKCCRCRRIGGPEC 1367 (1665)
Q Consensus 1308 ~~~~vcCiC~kPyn~d~~MI~CD~C~~WFHg~CVgIte~~a~~i~~Y~Cp~Crr~~~P~c 1367 (1665)
+..++||+|++||+++.+||+||.|++|||++||||++..+..++.|+|+.|++.++|..
T Consensus 2 ~~~~~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~~~~ 61 (447)
T 3kv4_A 2 ASVPVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGPSI 61 (447)
T ss_dssp -CCCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHCCCE
T ss_pred CCCCEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCH
T ss_conf 987859867993799997587678886414013786701004799899989866347720
No 4
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=1.00 E-value=1 Score=129.17 Aligned_cols=62 Identities=32% Similarity=0.751 Sum_probs=56.1
Q ss_pred CCCCCEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 99997010158898999662865899860025445357336689640560685434888888
Q 000325 1307 AHLEPVCDLCKQPYNSNLMYIHCETCQRWFHADAVELEESKLSDVVGFKCCRCRRIGGPECP 1368 (1665)
Q Consensus 1307 ~~~~~vcCiC~kPyn~d~~MI~CD~C~~WFHg~CVgIte~~a~~i~~Y~Cp~Crr~~~P~cp 1368 (1665)
.....+||+|++||+++.+||+||.|++|||+.||||++..+..++.|+|+.|+..++|...
T Consensus 33 ~~~~~~yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~~~~ 94 (488)
T 3kv5_D 33 PPPPPVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHGSSLM 94 (488)
T ss_dssp CCCCCEETTTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHHCSCEE
T ss_pred CCCCCEEEECCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCHH
T ss_conf 78887487679967999876874688875642106757443468887988998677685020
No 5
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=127.14 Aligned_cols=141 Identities=15% Similarity=0.283 Sum_probs=92.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-C---C-CCCCCCCCHHHHHH
Q ss_conf 10111003467101578887423222226666899999831333742546873234676-6---6-65003334155577
Q 000325 374 GDECRICGMDGTLLCCDGCPSAYHTRCIGVSKMYVPEGSWYCPECAINKVGPIVTIGTS-L---R-GAELFGIDLYERVF 448 (1665)
Q Consensus 374 dd~C~VC~~gG~LLcCD~Cp~afHl~CL~PpL~~iPeGeW~Cp~C~~~~~~p~~E~g~~-~---r-g~EllGcD~cgR~Y 448 (1665)
+++|.+|+++|+||+||+|+++||++|+.|++..+|.|+|+|+.|........ +.+.. . + .+..-+.....+
T Consensus 2 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~~~~~-~~g~~s~~~~~~~~~~~~m~~~~~-- 78 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKE-EDGSLSLDGADSTGVVAKLSPANQ-- 78 (189)
T ss_dssp CCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSCCTTC-SCSSCCSSSSSSSCSSCSSCHHHH--
T ss_pred CCCCCCCCCCCCEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCHHHH--
T ss_conf 88276479999456899998333102289875668998788927047777775-544201134542000147999999--
Q ss_pred HHHCCCCEEE-CCCCCCHH-----HCCCCC------CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 7221542051-25789222-----002358------77767899987014410233757999999984276663668887
Q 000325 449 LGTCNHLLVL-NASSNTEQ-----YIRYYN------PIDIPKVLQALLSSVQHVSLYLGICKAILHYWDIPESVVPFMGM 516 (1665)
Q Consensus 449 h~kCerLll~-~~s~D~e~-----e~~YYs------t~DL~~Vl~vLy~sDih~~~y~eI~~~I~~y~~ip~NL~nl~~~ 516 (1665)
..|++++.. ..+..++. -..||. ||||..|.++|..... ..|..+.+++.++..|+.|..... .
T Consensus 79 -~~c~~iL~~l~~~~~s~pF~~pV~~~Yy~iIk~~~PMDL~tIk~kL~~~~~--~~Y~s~~eF~~Dv~Lif~N~~~yN-~ 154 (189)
T 2ro1_A 79 -RKCERVLLALFCHEPCRPLHQLATDSTFSLDQPGGTLDLTLIRARLQEKLS--PPYSSPQEFAQDVGRMFKQFNKLT-E 154 (189)
T ss_dssp -HHHHHHHHHHHHSTTHHHHHSCSCCTTCSSSCSSCCCCHHHHHHHHHTSSS--SCCSCHHHHHHHHHHHHHHHHHHC-C
T ss_pred -HHHHHHHHHCCCCCCCHHHCCCCCHHHHCCCCCCCCCCHHHHHHHHHCCCC--CCCCCHHHHHHHHHHHHHHHHHHC-C
T ss_conf -999999753035853211147897565230047882269999999966997--666999999999999999999988-9
Q ss_pred CCCCC
Q ss_conf 66520
Q 000325 517 ETNTI 521 (1665)
Q Consensus 517 ~~Sl~ 521 (1665)
+.++.
T Consensus 155 ~s~~~ 159 (189)
T 2ro1_A 155 DKADV 159 (189)
T ss_dssp SSCSS
T ss_pred CCHHH
T ss_conf 98899
No 6
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=1.00 E-value=1 Score=116.96 Aligned_cols=60 Identities=30% Similarity=0.776 Sum_probs=54.9
Q ss_pred CCCCCEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 999970101588989996628658998600254453573366896405606854348888
Q 000325 1307 AHLEPVCDLCKQPYNSNLMYIHCETCQRWFHADAVELEESKLSDVVGFKCCRCRRIGGPE 1366 (1665)
Q Consensus 1307 ~~~~~vcCiC~kPyn~d~~MI~CD~C~~WFHg~CVgIte~~a~~i~~Y~Cp~Crr~~~P~ 1366 (1665)
.+.+++||+|++||+++.+||+||.|++|||+.||||++.++..++.|+|+.|+...+|.
T Consensus 6 ~~~~~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~~~~ 65 (75)
T 3kqi_A 6 MATVPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHGKS 65 (75)
T ss_dssp TCCCCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHHCCC
T ss_pred CCCCEEEEECCCCCCCCCCEEECCCCCCCEECCCCCCCCCCCCCCCEEECCCCCCCCCCC
T ss_conf 788823877789379997778737999877334066263444789989999896667978
No 7
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=1.00 E-value=1 Score=115.96 Aligned_cols=62 Identities=42% Similarity=0.832 Sum_probs=55.5
Q ss_pred CCCCCCCEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 98999970101588989996628658998600254453573366896405606854348888
Q 000325 1305 SVAHLEPVCDLCKQPYNSNLMYIHCETCQRWFHADAVELEESKLSDVVGFKCCRCRRIGGPE 1366 (1665)
Q Consensus 1305 ~~~~~~~vcCiC~kPyn~d~~MI~CD~C~~WFHg~CVgIte~~a~~i~~Y~Cp~Crr~~~P~ 1366 (1665)
...+...+||+|++||+++.+||+||.|++|||+.||||+...+..++.|+|+.|+..++|.
T Consensus 6 ~~~~~~~~~C~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~~ 67 (79)
T 1wep_A 6 SGMALVPVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGPS 67 (79)
T ss_dssp CCCCCCCCCSTTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCSC
T ss_pred CCCCCCCCEEECCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCC
T ss_conf 47667860887399068998567767899738702157463312689849998866666877
No 8
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=1.00 E-value=1 Score=115.11 Aligned_cols=59 Identities=24% Similarity=0.442 Sum_probs=48.1
Q ss_pred CEEECCCC---CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 70101588---989996628658998600254453573366896405606854348888887
Q 000325 1311 PVCDLCKQ---PYNSNLMYIHCETCQRWFHADAVELEESKLSDVVGFKCCRCRRIGGPECPY 1369 (1665)
Q Consensus 1311 ~vcCiC~k---Pyn~d~~MI~CD~C~~WFHg~CVgIte~~a~~i~~Y~Cp~Crr~~~P~cp~ 1369 (1665)
++++.+.+ +++++.+||+||.|++|||+.||||++++++.++.|+||.|...++|....
T Consensus 40 ~~~~s~kk~~~~~n~~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~~~gps~~k 101 (528)
T 3pur_A 40 KPLMSKKKSHHHKKNDFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPHTGHSIRY 101 (528)
T ss_dssp --CCSCCCTTTTTTSTTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTTTHHHHCSCEEC
T ss_pred HCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHCCCCEEECCCCCCCCCCCCEE
T ss_conf 11355430016899699877789998678972899994684189719995784777995234
No 9
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=109.90 Aligned_cols=57 Identities=26% Similarity=0.592 Sum_probs=49.2
Q ss_pred CCEEECCCCCCCCCCCEEECC-CCCCCCCCCCCCCCCCCCCCC-----CCEEECCCCCCCCCC
Q ss_conf 970101588989996628658-998600254453573366896-----405606854348888
Q 000325 1310 EPVCDLCKQPYNSNLMYIHCE-TCQRWFHADAVELEESKLSDV-----VGFKCCRCRRIGGPE 1366 (1665)
Q Consensus 1310 ~~vcCiC~kPyn~d~~MI~CD-~C~~WFHg~CVgIte~~a~~i-----~~Y~Cp~Crr~~~P~ 1366 (1665)
...|.+|++||+++..||+|| .|++|||++||||++..++.+ ..|+||.|.....+.
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~~ 65 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEGS 65 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTTC
T ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCC
T ss_conf 679879999448999898826875602630347868899986312789879991440838779
No 10
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=1.00 E-value=1 Score=109.48 Aligned_cols=55 Identities=25% Similarity=0.591 Sum_probs=48.6
Q ss_pred CCCCCEEECCCCCCCCCCCEEECC-CCCCCCCCCCCCCCCCCCCCCC-----CEEECCCCC
Q ss_conf 999970101588989996628658-9986002544535733668964-----056068543
Q 000325 1307 AHLEPVCDLCKQPYNSNLMYIHCE-TCQRWFHADAVELEESKLSDVV-----GFKCCRCRR 1361 (1665)
Q Consensus 1307 ~~~~~vcCiC~kPyn~d~~MI~CD-~C~~WFHg~CVgIte~~a~~i~-----~Y~Cp~Crr 1361 (1665)
.+....|++|++||+++.+||+|| .|++|||+.||||+++.++.++ .|+|+.|..
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~~ 65 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMA 65 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHHC
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHCCCCCHHHHHHHHCCCCCCEECCCCCC
T ss_conf 7776747468796589977584255756248332168799999875315787677927359
Done!