BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000326
(1661 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1C4Z|A Chain A, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1C4Z|B Chain B, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1C4Z|C Chain C, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1D5F|A Chain A, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
pdb|1D5F|B Chain B, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
pdb|1D5F|C Chain C, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
Length = 358
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 102/376 (27%), Positives = 167/376 (44%), Gaps = 83/376 (22%)
Query: 1302 KVRVSRNRILDSAAKVMEMYSSQ-----KAVLEVEYFGEVGTGLGP-TLEFYTLLSRDLQ 1355
+++V R+ I+D A +EM + + K L VE+ GE G G + EF+ L+ ++
Sbjct: 7 RLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIF 66
Query: 1356 RVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPW-PPSADASEGG 1414
+ M+ + S++ LF W PS+ +EG
Sbjct: 67 NPDIGMFTYDESTK-----------------------------LF---WFNPSSFETEGQ 94
Query: 1415 QFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQ 1474
F L+G V+ A+ + +LD+ F Y+ ++G + D L
Sbjct: 95 --------FTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRD-----------LG 135
Query: 1475 ELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFT-----LPGYPD-YILKPGD 1528
+ H ++ Q L+ + L + G +D+ + F L G P Y LK
Sbjct: 136 DSHPVLY--QSLKDL----------LEYEGNVEDDMMITFQISQTDLFGNPMMYDLKENG 183
Query: 1529 ENVDINN--LEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQ-IFTPHELDHLLC 1585
+ + I N +E+++L D + + +Q +AFR GF+ V + + L+ +F P E++ L+C
Sbjct: 184 DKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLIC 243
Query: 1586 GRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGG 1645
G R L + AL E ++D GYT S I EI+ FT +Q+R F QF TG R P GG
Sbjct: 244 GSRNL-DFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGG 302
Query: 1646 LAVLNPKLTIVRKVAP 1661
L L I+ K P
Sbjct: 303 LGKLK---MIIAKNGP 315
>pdb|3TUG|A Chain A, Crystal Structure Of The Hect Domain Of Itch E3 Ubiquitin
Ligase
Length = 398
Score = 97.1 bits (240), Expect = 8e-20, Method: Composition-based stats.
Identities = 73/236 (30%), Positives = 109/236 (46%), Gaps = 31/236 (13%)
Query: 1420 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVI 1479
++YFR +GR +A AL G+ +D FS FYK +L + L D+ D EF
Sbjct: 130 LKYFRFIGRFIAMALFHGKFIDTGFSLPFYKRILNKPVGLKDLESIDPEF---------- 179
Query: 1480 VCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDIN--NLE 1537
L + +N EE DL + +++ L + LKP N+ + N E
Sbjct: 180 ---YNSLIWVKENNIEEC-DLEMYFSVDKEI-----LGEIKSHDLKPNGGNILVTEENKE 230
Query: 1538 EYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL----WEP 1593
EYI +V + + G+ Q +AF GFN++ LQ F EL+ LLCG +E+ W+
Sbjct: 231 EYIRMVAEWRLSRGVEEQTQAFFEGFNEILPQQYLQYFDAKELEVLLCGMQEIDLNDWQR 290
Query: 1594 AALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVL 1649
A+ Y S I+ + + E +++ QFVTG RLP GG A L
Sbjct: 291 HAIYRR------YARTSKQIMWFWQFVKEIDNEKRMRLLQFVTGTCRLPVGGFADL 340
>pdb|1ND7|A Chain A, Conformational Flexibility Underlies Ubiquitin Ligation
Mediated By The Wwp1 Hect Domain E3 Ligase
Length = 374
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 110/251 (43%), Gaps = 35/251 (13%)
Query: 1420 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVI 1479
+ YF +GR +A AL G+ +D FS FYK +L +L + D+ D EF
Sbjct: 111 LSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEF---------- 160
Query: 1480 VCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDIN--NLE 1537
L + +N EE + +E L + LK G N+ + N +
Sbjct: 161 ---YNSLIWIRDNNIEECGLEMYFSVDME------ILGKVTSHDLKLGGSNILVTEENKD 211
Query: 1538 EYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL----WEP 1593
EYI L+ + G+ Q +AF GFN+V + LQ F EL+ +LCG +E+ W+
Sbjct: 212 EYIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQR 271
Query: 1594 AALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVL---- 1649
+ H YT S I+ + + E + + QFVTG RLP GG A L
Sbjct: 272 NTVYRH------YTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAELMGSN 325
Query: 1650 NPKLTIVRKVA 1660
P+ + KV
Sbjct: 326 GPQKFCIEKVG 336
>pdb|2XBB|A Chain A, Nedd4 Hect:ub Complex
pdb|2XBB|B Chain B, Nedd4 Hect:ub Complex
pdb|2XBF|A Chain A, Nedd4 Hect Structure
Length = 386
Score = 90.5 bits (223), Expect = 7e-18, Method: Composition-based stats.
Identities = 91/359 (25%), Positives = 161/359 (44%), Gaps = 72/359 (20%)
Query: 1302 KVRVSRNRIL-DSAAKVMEMYSSQ--KAVLEVEYFGEVGTGLGPTL-EFYTLLSRDLQRV 1357
++++ R +L DS ++M + + KA L +E+ GE G G E++ L+S+++
Sbjct: 30 EMKLRRATVLEDSYRRIMGVKRADFLKARLWIEFDGEKGLDYGGVAREWFFLISKEMFNP 89
Query: 1358 GLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFS 1417
++ S+++N +++I+ + G +
Sbjct: 90 YYGLFEY-SATDNYTLQINPNSGLCNEDH------------------------------- 117
Query: 1418 KVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELH 1477
+ YF+ +GRV A+ G+LLD F FYK++L + LHD+ D+E+ L+ +
Sbjct: 118 --LSYFKFIGRVAGMAVYHGKLLDGFFIRPFYKMMLHKPITLHDMESVDSEYYNSLRWI- 174
Query: 1478 VIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYP-DYILKPGDENVDIN-- 1534
+ +D E +DLRF +D L G + LK G + +
Sbjct: 175 -----------LENDPTE--LDLRF--------IIDEELFGQTHQHELKNGGSEIVVTNK 213
Query: 1535 NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL---- 1590
N +EYI LV+ I +QM AF+ GF ++ ++IF +EL+ L+CG ++
Sbjct: 214 NKKEYIYLVIQWRFVNRIQKQMAAFKEGFFELIPQDLIKIFDENELELLMCGLGDVDVND 273
Query: 1591 WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVL 1649
W EH K+ +GY+A I + + +++ QFVTG R+P G A L
Sbjct: 274 WR-----EHTKYKNGYSANHQVIQWFWKAVLMMDSEKRIRLLQFVTGTSRVPMNGFAEL 327
>pdb|3JW0|C Chain C, E2~ubiquitin-Hect
pdb|3JW0|D Chain D, E2~ubiquitin-Hect
Length = 385
Score = 87.4 bits (215), Expect = 6e-17, Method: Composition-based stats.
Identities = 89/361 (24%), Positives = 157/361 (43%), Gaps = 72/361 (19%)
Query: 1300 RQKVRVSRNRILD-SAAKVMEMYSSQ--KAVLEVEYFGEVGTGLGPTL-EFYTLLSRDLQ 1355
R ++++ RN I + S ++M + KA L +E+ E G G E++ LLS+++
Sbjct: 27 RFEMKLHRNNIFEESYRRIMSVKRPDVLKARLWIEFESEKGLDYGGVAREWFFLLSKEMF 86
Query: 1356 RVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQ 1415
++ S+++N +++I+ + G +
Sbjct: 87 NPYYGLFEY-SATDNYTLQINPNSGLCNEDH----------------------------- 116
Query: 1416 FSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQE 1475
+ YF +GRV A+ G+LLD F FYK++LG ++ L+D+ D+E+ L+
Sbjct: 117 ----LSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSEYYNSLKW 172
Query: 1476 LHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYI-LKPGDENVDIN 1534
+ + +D E +DL F C+D G + LKP + +
Sbjct: 173 I------------LENDPTE--LDLMF--------CIDEENFGQTYQVDLKPNGSEIMVT 210
Query: 1535 --NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL-- 1590
N EYI LV+ + +QM AF GF ++ I ++IF +EL+ L+CG ++
Sbjct: 211 NENKREYIDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGDVDV 270
Query: 1591 --WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAV 1648
W +H + +GY P I + + +++ QFVTG R+P G A
Sbjct: 271 NDWR-----QHSIYKNGYCPNHPVIQWFWKAVLLMDAEKRIRLLQFVTGTSRVPMNGFAE 325
Query: 1649 L 1649
L
Sbjct: 326 L 326
>pdb|3JVZ|C Chain C, E2~ubiquitin-Hect
pdb|3JVZ|D Chain D, E2~ubiquitin-Hect
Length = 385
Score = 87.4 bits (215), Expect = 6e-17, Method: Composition-based stats.
Identities = 89/361 (24%), Positives = 157/361 (43%), Gaps = 72/361 (19%)
Query: 1300 RQKVRVSRNRILD-SAAKVMEMYSSQ--KAVLEVEYFGEVGTGLGPTL-EFYTLLSRDLQ 1355
R ++++ RN I + S ++M + KA L +E+ E G G E++ LLS+++
Sbjct: 27 RFEMKLHRNNIFEESYRRIMSVKRPDVLKARLWIEFESEKGLDYGGVAREWFFLLSKEMF 86
Query: 1356 RVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQ 1415
++ S+++N +++I+ + G +
Sbjct: 87 NPYYGLFEY-SATDNYTLQINPNSGLCNEDH----------------------------- 116
Query: 1416 FSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQE 1475
+ YF +GRV A+ G+LLD F FYK++LG ++ L+D+ D+E+ L+
Sbjct: 117 ----LSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSEYYNSLKW 172
Query: 1476 LHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYI-LKPGDENVDIN 1534
+ + +D E +DL F C+D G + LKP + +
Sbjct: 173 I------------LENDPTE--LDLMF--------CIDEENFGQTYQVDLKPNGSEIMVT 210
Query: 1535 --NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL-- 1590
N EYI LV+ + +QM AF GF ++ I ++IF +EL+ L+CG ++
Sbjct: 211 NENKREYIDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGDVDV 270
Query: 1591 --WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAV 1648
W +H + +GY P I + + +++ QFVTG R+P G A
Sbjct: 271 NDWR-----QHSIYKNGYCPNHPVIQWFWKAVLLMDAEKRIRLLQFVTGTSRVPMNGFAE 325
Query: 1649 L 1649
L
Sbjct: 326 L 326
>pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain
Length = 405
Score = 83.6 bits (205), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 93/361 (25%), Positives = 150/361 (41%), Gaps = 67/361 (18%)
Query: 1297 RLERQKVRVSRNRILDSAAKVMEMYSSQ--KAVLEVEYFGEVGTGLGPTL-EFYTLLSRD 1353
R E V V R+ + + + + + S + K L + + GE G G L E+Y ++SR+
Sbjct: 44 RKEDMAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEGEEGQDAGGLLREWYMIISRE 103
Query: 1354 LQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEG 1413
+ A++R++ GD V + PS+ A+
Sbjct: 104 MFNPMYALFRTSP-----------------------GDRVTYTIN-------PSSHANPN 133
Query: 1414 GQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKIL 1473
+ YF+ +GR++AKA+ D RLL+ F+ +FYK +LG + D+ D F + L
Sbjct: 134 H-----LSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGL 188
Query: 1474 QELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDI 1533
L + +D DL F E F + D LKP N+ +
Sbjct: 189 VYL------------LENDVSTLGYDLTFSTEVQE-----FGVAEVRD--LKPNGANILV 229
Query: 1534 N--NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELW 1591
N +EY+ LV + I +Q+ AF GF ++ + IFT EL+ L+ G
Sbjct: 230 TEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGL---- 285
Query: 1592 EPAALAEHIKFD---HGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAV 1648
P + +K + H Y + S I + F + F QFVTG ++P G A
Sbjct: 286 -PTIDIDDLKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAA 344
Query: 1649 L 1649
L
Sbjct: 345 L 345
>pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
Huwe1
pdb|3G1N|B Chain B, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
Huwe1
Length = 388
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 92/361 (25%), Positives = 149/361 (41%), Gaps = 67/361 (18%)
Query: 1297 RLERQKVRVSRNRILDSAAKVMEMYSSQ--KAVLEVEYFGEVGTGLGPTL-EFYTLLSRD 1353
R E V V R+ + + + + + S + K L + + GE G G L E+Y ++SR+
Sbjct: 27 RKEDMAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEGEEGQDAGGLLREWYMIISRE 86
Query: 1354 LQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEG 1413
+ A++R++ GD V + PS+ +
Sbjct: 87 MFNPMYALFRTSP-----------------------GDRVTYTIN-------PSSHCNPN 116
Query: 1414 GQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKIL 1473
+ YF+ +GR++AKA+ D RLL+ F+ +FYK +LG + D+ D F + L
Sbjct: 117 H-----LSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGL 171
Query: 1474 QELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDI 1533
L + +D DL F E F + D LKP N+ +
Sbjct: 172 VYL------------LENDVSTLGYDLTFSTEVQE-----FGVCEVRD--LKPNGANILV 212
Query: 1534 N--NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELW 1591
N +EY+ LV + I +Q+ AF GF ++ + IFT EL+ L+ G
Sbjct: 213 TEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGL---- 268
Query: 1592 EPAALAEHIKFD---HGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAV 1648
P + +K + H Y + S I + F + F QFVTG ++P G A
Sbjct: 269 -PTIDIDDLKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAA 327
Query: 1649 L 1649
L
Sbjct: 328 L 328
>pdb|2ONI|A Chain A, Catalytic Domain Of The Human Nedd4-Like E3 Ligase
Length = 392
Score = 80.5 bits (197), Expect = 7e-15, Method: Composition-based stats.
Identities = 67/237 (28%), Positives = 105/237 (44%), Gaps = 34/237 (14%)
Query: 1420 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVI 1479
+ YF +GRV A+ G+LLD F FYK LG ++ L+D D+E+ L+ +
Sbjct: 132 LSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKXXLGKQITLNDXESVDSEYYNSLKWI--- 188
Query: 1480 VCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYI-LKPGDENVDIN--NL 1536
+ +D E +DL F C+D G + LKP + + N
Sbjct: 189 ---------LENDPTE--LDLXF--------CIDEENFGQTYQVDLKPNGSEIXVTNENK 229
Query: 1537 EEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL----WE 1592
EYI LV+ + +Q AF GF ++ I ++IF +EL+ L CG ++ W
Sbjct: 230 REYIDLVIQWRFVNRVQKQXNAFLEGFTELLPIDLIKIFDENELELLXCGLGDVDVNDWR 289
Query: 1593 PAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVL 1649
+H + +GY P I + + +++ QFVTG R+P G A L
Sbjct: 290 -----QHSIYKNGYCPNHPVIQWFWKAVLLXDAEKRIRLLQFVTGTSRVPXNGFAEL 341
>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within
The Catalytic Domain Of A Hect Ubiquitin Ligase
Length = 429
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 100/232 (43%), Gaps = 24/232 (10%)
Query: 1420 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVI 1479
+ YF+ +GRV+ + R LD F A YK++L ++ L D+ DAE
Sbjct: 162 LNYFKFIGRVVGLGVFHRRFLDAFFVGALYKMMLRKKVVLQDMEGVDAEV---------- 211
Query: 1480 VCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDIN--NLE 1537
L M ++ + V+DL F A E T+ LKP N+++ N +
Sbjct: 212 ---YNSLNWMLENSIDGVLDLTF-SADDERFGEVVTVD------LKPDGRNIEVTDGNKK 261
Query: 1538 EYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALA 1597
EY+ L + + Q +AF GFN++ + +F EL+ L+ G E+ +
Sbjct: 262 EYVELYTQWRIVDRVQEQFKAFMDGFNELIPEDLVTVFDERELELLIGGIAEI-DIEDWK 320
Query: 1598 EHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVL 1649
+H + GY I + + E+ +Q+ QF TG R+P G L
Sbjct: 321 KHTDY-RGYQESDEVIQWFWKCVSEWDNEQRARLLQFTTGTSRIPVNGFKDL 371
>pdb|1ZVD|A Chain A, Regulation Of Smurf2 Ubiquitin Ligase Activity By Anchoring
The E2 To The Hect Domain
Length = 380
Score = 69.7 bits (169), Expect = 1e-11, Method: Composition-based stats.
Identities = 67/252 (26%), Positives = 109/252 (43%), Gaps = 40/252 (15%)
Query: 1420 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVI 1479
+ YF +GR+ A+ G +D F+ FYK +LG + L D D + LH
Sbjct: 112 LSYFHFVGRIXGXAVFHGHYIDGGFTLPFYKQLLGKSITLDDXELVDPD-------LH-- 162
Query: 1480 VCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPG-YPDYILKPGDENVDIN--NL 1536
L + ++ V+D F C++ G + LKP +++ +N N
Sbjct: 163 ----NSLVWILENDITGVLDHTF--------CVEHNAYGEIIQHELKPNGKSIPVNEENK 210
Query: 1537 EEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL----WE 1592
+EY+ L V+ GI Q A + GFN+V L+ F EL+ ++CG ++ W+
Sbjct: 211 KEYVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKTFDEKELELIICGLGKIDVNDWK 270
Query: 1593 PAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRA-FCQFVTGAPRLPPGGLAVLN- 1650
+H D IV EF +++RA QFVTG+ R+P G L
Sbjct: 271 VNTRLKHCTPDSN-------IVKWFWKAVEFFDEERRARLLQFVTGSSRVPLQGFKALQG 323
Query: 1651 ---PKLTIVRKV 1659
P+L + ++
Sbjct: 324 AAGPRLFTIHQI 335
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 106/225 (47%), Gaps = 9/225 (4%)
Query: 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDI 73
L ++ G+ +D + Q+EA TQ ++LSI + P V L E P +
Sbjct: 76 LPAMIGGVYSD-DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQL 134
Query: 74 MLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT 133
AA ALT++ + V+ +GAV FV +LL D+ EQ++ AL ++ + P
Sbjct: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFV-KLLGSSSDDVREQAVWALGNVAGDSPK 193
Query: 134 A---CLRAGALMAVLSYLDFFST-GVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLL 189
L GAL+ +L+ L+ + + R A T +N C+ P + + A+P L L+
Sbjct: 194 CRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLI 253
Query: 190 QYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLI 234
+D +VL A L+ +++ + DK+ + G+ + L+
Sbjct: 254 HSNDEEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELL 295
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 106/225 (47%), Gaps = 9/225 (4%)
Query: 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDI 73
L ++ G+ +D + Q+EA TQ ++LSI + P V L E P +
Sbjct: 38 LPAMIGGVYSD-DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQL 96
Query: 74 MLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT 133
AA ALT++ + V+ +GAV FV +LL D+ EQ++ AL ++ + P
Sbjct: 97 QFEAAWALTNIASGTSENTKVVIDHGAVPIFV-KLLGSSSDDVREQAVWALGNVAGDSPK 155
Query: 134 A---CLRAGALMAVLSYLDFFST-GVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLL 189
L GAL+ +L+ L+ + + R A T +N C+ P + + A+P L L+
Sbjct: 156 CRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLI 215
Query: 190 QYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLI 234
+D +VL A L+ +++ + DK+ + G+ + L+
Sbjct: 216 HSNDEEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELL 257
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/282 (21%), Positives = 123/282 (43%), Gaps = 23/282 (8%)
Query: 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDI 73
++ I+ G+ ++ E Q++A ++LS + + P V L I
Sbjct: 59 VEDIVKGINSNNLE-SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 74 MLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT 133
+A ALT++ AVV GA+ F++ LL + ++EQ++ AL I+ +
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFIS-LLASPHAHISEQAVWALGNIAGDGSA 176
Query: 134 ---ACLRAGA---LMAVLSYLDF--FSTGVQRVALSTAANMCK-KLPSDAADFVMEAVPL 184
++ GA L+A+L+ D + G R T +N+C+ K P+ D V + +P
Sbjct: 177 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 236
Query: 185 LTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQA 244
L LL ++D +VL + ++ + + ++++ + G+V Q L+ +
Sbjct: 237 LVRLLHHNDPEVLADSCWAISYLTDG---PNERIEMVVKKGVVPQLVKLLGAT------- 286
Query: 245 SLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILS 286
P T +R + +G+ + ++ G + +L+
Sbjct: 287 --ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 326
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/312 (20%), Positives = 132/312 (42%), Gaps = 27/312 (8%)
Query: 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDI 73
++ I+ G+ ++ E Q++A ++LS + + P V L I
Sbjct: 78 VEDIVKGINSNNLES-QLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 136
Query: 74 MLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKIS---QE 130
+A ALT++ AVV GA+ F++ LL + ++EQ++ AL I+
Sbjct: 137 QFESAWALTNIASGTSEQTKAVVDGGAIPAFIS-LLASPHAHISEQAVWALGNIAGAGSA 195
Query: 131 HPTACLRAGA---LMAVLSYLDF--FSTGVQRVALSTAANMCK-KLPSDAADFVMEAVPL 184
++ GA L+A+L+ D + G R T +N+C+ K P+ D V + +P
Sbjct: 196 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 255
Query: 185 LTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQA 244
L LL ++D +VL + ++ + + ++++ + G+V Q L+ +
Sbjct: 256 LVRLLHHNDPEVLADSCWAISYLTDG---PNERIEMVVKKGVVPQLVKLLGAT------- 305
Query: 245 SLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPA 304
P T +R + +G+ + ++ G + +L+ + +S
Sbjct: 306 --ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNIT 363
Query: 305 ----EQIFEIVN 312
+QI ++VN
Sbjct: 364 AGRQDQIQQVVN 375
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/282 (21%), Positives = 123/282 (43%), Gaps = 23/282 (8%)
Query: 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDI 73
++ I+ G+ ++ E Q++A ++LS + + P V L I
Sbjct: 45 VEDIVKGINSNNLE-SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 103
Query: 74 MLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT 133
+A ALT++ AVV GA+ F++ LL + ++EQ++ AL I+ +
Sbjct: 104 QFESAWALTNIASGTSEQTKAVVDGGAIPAFIS-LLASPHAHISEQAVWALGNIAGDGSA 162
Query: 134 ---ACLRAGA---LMAVLSYLDF--FSTGVQRVALSTAANMCK-KLPSDAADFVMEAVPL 184
++ GA L+A+L+ D + G R T +N+C+ K P+ D V + +P
Sbjct: 163 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 222
Query: 185 LTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQA 244
L LL ++D +VL + ++ + + ++++ + G+V Q L+ +
Sbjct: 223 LVRLLHHNDPEVLADSCWAISYLTDG---PNERIEMVVKKGVVPQLVKLLGAT------- 272
Query: 245 SLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILS 286
P T +R + +G+ + ++ G + +L+
Sbjct: 273 --ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 312
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/282 (21%), Positives = 123/282 (43%), Gaps = 23/282 (8%)
Query: 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDI 73
++ I+ G+ ++ E Q++A ++LS + + P V L I
Sbjct: 59 VEDIVKGINSNNLE-SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 74 MLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT 133
+A ALT++ AVV GA+ F++ LL + ++EQ++ AL I+ +
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFIS-LLASPHAHISEQAVWALGNIAGDGSA 176
Query: 134 ---ACLRAGA---LMAVLSYLDF--FSTGVQRVALSTAANMCK-KLPSDAADFVMEAVPL 184
++ GA L+A+L+ D + G R T +N+C+ K P+ D V + +P
Sbjct: 177 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 236
Query: 185 LTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQA 244
L LL ++D +VL + ++ + + ++++ + G+V Q L+ +
Sbjct: 237 LVRLLHHNDPEVLADSCWAISYLTDG---PNERIEMVVKKGVVPQLVKLLGAT------- 286
Query: 245 SLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILS 286
P T +R + +G+ + ++ G + +L+
Sbjct: 287 --ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 326
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/282 (21%), Positives = 123/282 (43%), Gaps = 23/282 (8%)
Query: 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDI 73
++ I+ G+ ++ E Q++A ++LS + + P V L I
Sbjct: 59 VEDIVKGINSNNLE-SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 74 MLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT 133
+A ALT++ AVV GA+ F++ LL + ++EQ++ AL I+ +
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFIS-LLASPHAHISEQAVWALGNIAGDGSA 176
Query: 134 ---ACLRAGA---LMAVLSYLDF--FSTGVQRVALSTAANMCK-KLPSDAADFVMEAVPL 184
++ GA L+A+L+ D + G R T +N+C+ K P+ D V + +P
Sbjct: 177 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 236
Query: 185 LTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQA 244
L LL ++D +VL + ++ + + ++++ + G+V Q L+ +
Sbjct: 237 LVRLLHHNDPEVLADSCWAISYLTDG---PNERIEMVVKKGVVPQLVKLLGAT------- 286
Query: 245 SLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILS 286
P T +R + +G+ + ++ G + +L+
Sbjct: 287 --ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 326
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/282 (21%), Positives = 123/282 (43%), Gaps = 23/282 (8%)
Query: 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDI 73
++ I+ G+ ++ E Q++A ++LS + + P V L I
Sbjct: 15 VEDIVKGINSNNLE-SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 73
Query: 74 MLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT 133
+A ALT++ AVV GA+ F++ LL + ++EQ++ AL I+ +
Sbjct: 74 QFESAWALTNIASGTSEQTKAVVDGGAIPAFIS-LLASPHAHISEQAVWALGNIAGDGSA 132
Query: 134 ---ACLRAGA---LMAVLSYLDF--FSTGVQRVALSTAANMCK-KLPSDAADFVMEAVPL 184
++ GA L+A+L+ D + G R T +N+C+ K P+ D V + +P
Sbjct: 133 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 192
Query: 185 LTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQA 244
L LL ++D +VL + ++ + + ++++ + G+V Q L+ +
Sbjct: 193 LVRLLHHNDPEVLADSCWAISYLTDG---PNERIEMVVKKGVVPQLVKLLGAT------- 242
Query: 245 SLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILS 286
P T +R + +G+ + ++ G + +L+
Sbjct: 243 --ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 282
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/312 (20%), Positives = 133/312 (42%), Gaps = 27/312 (8%)
Query: 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDI 73
++ I+ G+ ++ E Q++A ++LS + + P V L I
Sbjct: 35 VEDIVKGINSNNLES-QLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 93
Query: 74 MLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT 133
+A ALT++ AVV GA+ F++ LL + ++EQ++ AL I+ +
Sbjct: 94 QFESAWALTNIASGTSEQTKAVVDGGAIPAFIS-LLASPHAHISEQAVWALGNIAGDGSA 152
Query: 134 ---ACLRAGA---LMAVLSYLDF--FSTGVQRVALSTAANMCK-KLPSDAADFVMEAVPL 184
++ GA L+A+L+ D + G R T +N+C+ K P+ D V + +P
Sbjct: 153 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 212
Query: 185 LTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQA 244
L LL ++D +VL + ++ + + ++++ + G+V Q L+ +
Sbjct: 213 LVRLLHHNDPEVLADSCWAISYLTDG---PNERIEMVVKKGVVPQLVKLLGAT------- 262
Query: 245 SLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPA 304
P T +R + +G+ + ++ G + +L+ + +S
Sbjct: 263 --ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNIT 320
Query: 305 ----EQIFEIVN 312
+QI ++VN
Sbjct: 321 AGRQDQIQQVVN 332
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/282 (21%), Positives = 123/282 (43%), Gaps = 23/282 (8%)
Query: 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDI 73
++ I+ G+ ++ E Q++A ++LS + + P V L I
Sbjct: 9 VEDIVKGINSNNLE-SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 74 MLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT 133
+A ALT++ AVV GA+ F++ LL + ++EQ++ AL I+ +
Sbjct: 68 QFESAWALTNIASGTSEQTKAVVDGGAIPAFIS-LLASPHAHISEQAVWALGNIAGDGSA 126
Query: 134 ---ACLRAGA---LMAVLSYLDF--FSTGVQRVALSTAANMCK-KLPSDAADFVMEAVPL 184
++ GA L+A+L+ D + G R T +N+C+ K P+ D V + +P
Sbjct: 127 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 186
Query: 185 LTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQA 244
L LL ++D +VL + ++ + + ++++ + G+V Q L+ +
Sbjct: 187 LVRLLHHNDPEVLADSCWAISYLTDG---PNERIEMVVKKGVVPQLVKLLGAT------- 236
Query: 245 SLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILS 286
P T +R + +G+ + ++ G + +L+
Sbjct: 237 --ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 276
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/312 (20%), Positives = 133/312 (42%), Gaps = 27/312 (8%)
Query: 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDI 73
++ I+ G+ ++ E Q++A ++LS + + P V L I
Sbjct: 43 VEDIVKGINSNNLE-SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 101
Query: 74 MLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT 133
+A ALT++ AVV GA+ F++ LL + ++EQ++ AL I+ +
Sbjct: 102 QFESAWALTNIASGTSEQTKAVVDGGAIPAFIS-LLASPHAHISEQAVWALGNIAGDGSA 160
Query: 134 ---ACLRAGA---LMAVLSYLDF--FSTGVQRVALSTAANMCK-KLPSDAADFVMEAVPL 184
++ GA L+A+L+ D + G R T +N+C+ K P+ D V + +P
Sbjct: 161 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 220
Query: 185 LTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQA 244
L LL ++D +VL + ++ + + ++++ + G+V Q L+ +
Sbjct: 221 LVRLLHHNDPEVLADSCWAISYLTDG---PNERIEMVVKKGVVPQLVKLLGAT------- 270
Query: 245 SLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPA 304
P T +R + +G+ + ++ G + +L+ + +S
Sbjct: 271 --ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNIT 328
Query: 305 ----EQIFEIVN 312
+QI ++VN
Sbjct: 329 AGRQDQIQQVVN 340
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 60/282 (21%), Positives = 123/282 (43%), Gaps = 23/282 (8%)
Query: 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDI 73
++ I+ G+ ++ E Q++A ++LS + + P V L I
Sbjct: 9 VEDIVKGINSNNLE-SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 74 MLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT 133
+A ALT++ AVV GA+ F++ LL + ++EQ++ AL I+ +
Sbjct: 68 QFESAWALTNIASGTSEQTKAVVDGGAIPAFIS-LLASPHAHISEQAVWALGNIAGDGSA 126
Query: 134 ---ACLRAGA---LMAVLSYLDF--FSTGVQRVALSTAANMCK-KLPSDAADFVMEAVPL 184
++ GA L+A+L+ D + G R T +N+C+ K P+ D V + +P
Sbjct: 127 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 186
Query: 185 LTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQA 244
L LL ++D +VL + ++ + + ++++ + G+V Q L+ +
Sbjct: 187 LVRLLHHNDPEVLADSCWAISYLTDG---PNERIEMVVKKGVVPQLVKLLGAT------- 236
Query: 245 SLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILS 286
P T +R + +G+ + ++ G + +L+
Sbjct: 237 --ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 276
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 60/282 (21%), Positives = 123/282 (43%), Gaps = 23/282 (8%)
Query: 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDI 73
++ I+ G+ ++ E Q++A ++LS + + P V L I
Sbjct: 4 VEDIVKGINSNNLES-QLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 62
Query: 74 MLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT 133
+A ALT++ AVV GA+ F++ LL + ++EQ++ AL I+ +
Sbjct: 63 QFESAWALTNIASGTSEQTKAVVDGGAIPAFIS-LLASPHAHISEQAVWALGNIAGDGSA 121
Query: 134 ---ACLRAGA---LMAVLSYLDF--FSTGVQRVALSTAANMCK-KLPSDAADFVMEAVPL 184
++ GA L+A+L+ D + G R T +N+C+ K P+ D V + +P
Sbjct: 122 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 181
Query: 185 LTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQA 244
L LL ++D +VL + ++ + + ++++ + G+V Q L+ +
Sbjct: 182 LVRLLHHNDPEVLADSCWAISYLTDG---PNERIEMVVKKGVVPQLVKLLGAT------- 231
Query: 245 SLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILS 286
P T +R + +G+ + ++ G + +L+
Sbjct: 232 --ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 271
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 60/282 (21%), Positives = 123/282 (43%), Gaps = 23/282 (8%)
Query: 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDI 73
++ I+ G+ ++ E Q++A ++LS + + P V L I
Sbjct: 9 VEDIVKGINSNNLE-SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 74 MLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT 133
+A ALT++ AVV GA+ F++ LL + ++EQ++ AL I+ +
Sbjct: 68 QFESAWALTNIASGTSEQTKAVVDGGAIPAFIS-LLASPHAHISEQAVWALGNIAGDGSA 126
Query: 134 ---ACLRAGA---LMAVLSYLDF--FSTGVQRVALSTAANMCK-KLPSDAADFVMEAVPL 184
++ GA L+A+L+ D + G R T +N+C+ K P+ D V + +P
Sbjct: 127 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 186
Query: 185 LTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQA 244
L LL ++D +VL + ++ + + ++++ + G+V Q L+ +
Sbjct: 187 LVRLLHHNDPEVLADSCWAISYLTDG---PNERIEMVVKKGVVPQLVKLLGAT------- 236
Query: 245 SLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILS 286
P T +R + +G+ + ++ G + +L+
Sbjct: 237 --ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 276
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 60/282 (21%), Positives = 123/282 (43%), Gaps = 23/282 (8%)
Query: 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDI 73
++ I+ G+ ++ E Q++A ++LS + + P V L I
Sbjct: 8 VEDIVKGINSNNLE-SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 66
Query: 74 MLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT 133
+A ALT++ AVV GA+ F++ LL + ++EQ++ AL I+ +
Sbjct: 67 QFESAWALTNIASGTSEQTKAVVDGGAIPAFIS-LLASPHAHISEQAVWALGNIAGDGSA 125
Query: 134 ---ACLRAGA---LMAVLSYLDF--FSTGVQRVALSTAANMCK-KLPSDAADFVMEAVPL 184
++ GA L+A+L+ D + G R T +N+C+ K P+ D V + +P
Sbjct: 126 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 185
Query: 185 LTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQA 244
L LL ++D +VL + ++ + + ++++ + G+V Q L+ +
Sbjct: 186 LVRLLHHNDPEVLADSCWAISYLTDG---PNERIEMVVKKGVVPQLVKLLGAT------- 235
Query: 245 SLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILS 286
P T +R + +G+ + ++ G + +L+
Sbjct: 236 --ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 275
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 60/282 (21%), Positives = 123/282 (43%), Gaps = 23/282 (8%)
Query: 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDI 73
++ I+ G+ ++ E Q++A ++LS + + P V L I
Sbjct: 8 VEDIVKGINSNNLE-SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 66
Query: 74 MLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT 133
+A ALT++ AVV GA+ F++ LL + ++EQ++ AL I+ +
Sbjct: 67 QFESAWALTNIASGTSEQTKAVVDGGAIPAFIS-LLASPHAHISEQAVWALGNIAGDGSA 125
Query: 134 ---ACLRAGA---LMAVLSYLDF--FSTGVQRVALSTAANMCK-KLPSDAADFVMEAVPL 184
++ GA L+A+L+ D + G R T +N+C+ K P+ D V + +P
Sbjct: 126 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 185
Query: 185 LTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQA 244
L LL ++D +VL + ++ + + ++++ + G+V Q L+ +
Sbjct: 186 LVRLLHHNDPEVLADSCWAISYLTDG---PNERIEMVVKKGVVPQLVKLLGAT------- 235
Query: 245 SLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILS 286
P T +R + +G+ + ++ G + +L+
Sbjct: 236 --ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 275
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 60/282 (21%), Positives = 123/282 (43%), Gaps = 23/282 (8%)
Query: 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDI 73
++ I+ G+ ++ E Q++A ++LS + + P V L I
Sbjct: 4 VEDIVKGINSNNLES-QLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 62
Query: 74 MLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT 133
+A ALT++ AVV GA+ F++ LL + ++EQ++ AL I+ +
Sbjct: 63 QFESAWALTNIASGTSEQTKAVVDGGAIPAFIS-LLASPHAHISEQAVWALGNIAGDGSA 121
Query: 134 ---ACLRAGA---LMAVLSYLDF--FSTGVQRVALSTAANMCK-KLPSDAADFVMEAVPL 184
++ GA L+A+L+ D + G R T +N+C+ K P+ D V + +P
Sbjct: 122 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 181
Query: 185 LTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQA 244
L LL ++D +VL + ++ + + ++++ + G+V Q L+ +
Sbjct: 182 LVRLLHHNDPEVLADSCWAISYLTDG---PNERIEMVVKKGVVPQLVKLLGAT------- 231
Query: 245 SLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILS 286
P T +R + +G+ + ++ G + +L+
Sbjct: 232 --ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 271
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/279 (21%), Positives = 117/279 (41%), Gaps = 23/279 (8%)
Query: 17 ILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLL 76
I+ G+ + E Q++A ++LS + + P V L I
Sbjct: 13 IVKGINSSNVE-NQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFE 71
Query: 77 AARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT--- 133
+A ALT++ AVV GA+ F++ LL + ++EQ++ AL I+ +
Sbjct: 72 SAWALTNIASGTSEQTKAVVDGGAIPAFIS-LLASPHAHISEQAVWALGNIAGDGSVFRD 130
Query: 134 ACLRAGA---LMAVLSYLDF--FSTGVQRVALSTAANMCK-KLPSDAADFVMEAVPLLTN 187
++ GA L+A+L+ D + G R T +N+C+ K P+ D V + +P L
Sbjct: 131 LVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVR 190
Query: 188 LLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLS 247
LL + D +VL ++ + + +++ + G+V Q L+ S
Sbjct: 191 LLHHDDPEVLADTCWAISYLTDG---PNERIGMVVKTGVVPQLVKLLGAS---------E 238
Query: 248 TPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILS 286
P T +R + +G+ + ++ G + +L+
Sbjct: 239 LPIVTPALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLT 277
>pdb|3EYF|A Chain A, Crystal Structure Of Anti-Human Cytomegalovirus Antibody 8f9
Plus Gb Peptide
pdb|3EYF|C Chain C, Crystal Structure Of Anti-Human Cytomegalovirus Antibody 8f9
Plus Gb Peptide
pdb|3EYO|A Chain A, Crystal Structure Of Anti-Human Cytomegalovirus Antibody 8f9
pdb|3EYO|C Chain C, Crystal Structure Of Anti-Human Cytomegalovirus Antibody 8f9
Length = 216
Score = 34.3 bits (77), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 1542 LVVDATVK-TGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHI 1600
L+ DA+++ TGI + +G + IT L+ P + C +R +W P +
Sbjct: 48 LIFDASIRATGIPARFSGSGSGTDFTLTITRLE---PEDFAVYYCQQRSMWPPVTFGQGT 104
Query: 1601 KFDHGYTAKSPAI 1613
K + T +P++
Sbjct: 105 KLEIKRTVAAPSV 117
>pdb|2YO0|A Chain A, Salmonella Enterica Sada 1049-1304 Fused To Gcn4 Adaptors
(Sadak9-Cfi)
pdb|2YO1|A Chain A, Salmonella Enterica Sada 1049-1304 Fused To Gcn4 Adaptors
(Sadak9-Cfii)
pdb|2YO1|B Chain B, Salmonella Enterica Sada 1049-1304 Fused To Gcn4 Adaptors
(Sadak9-Cfii)
pdb|2YO1|C Chain C, Salmonella Enterica Sada 1049-1304 Fused To Gcn4 Adaptors
(Sadak9-Cfii)
Length = 322
Score = 32.7 bits (73), Expect = 2.0, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 648 IGSGVVAALLNYFSCGYKERMSEANMLKLRQQALKRFKSFIAVALPNSLDAGDVAPMTVL 707
IGSG +AA N + G EAN + + +R + +A + N+ DA +VA M +
Sbjct: 231 IGSGSIAAAENSVALGTNSVADEANTVSVGSSTQQRRITNVAAGV-NNTDAVNVAQMKQI 289
Query: 708 VQKLQNALSSL 718
K++ LS +
Sbjct: 290 EDKIEEILSKI 300
>pdb|3GS3|A Chain A, Structure Of The N-Terminal Heat Domain Of Symplekin From
D. Melanogaster
Length = 257
Score = 30.8 bits (68), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 7/112 (6%)
Query: 304 AEQIFEIVNLAN-ELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEV 362
AEQ + I++L ++L + + +++ F++G VV +S A + D + + ++V
Sbjct: 135 AEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADV 194
Query: 363 SAREKLLSDQPELLQQFGMDLLPVLIQIYG----SSVNSPVRHKCLSVIGKL 410
L + E LQ+ G ++L +L+Q +G SSVN L I K+
Sbjct: 195 PDHCTLF--RREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKM 244
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,996,032
Number of Sequences: 62578
Number of extensions: 1473785
Number of successful extensions: 3162
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 3108
Number of HSP's gapped (non-prelim): 55
length of query: 1661
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1549
effective length of database: 7,964,601
effective search space: 12337166949
effective search space used: 12337166949
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)