Query 000326
Match_columns 1661
No_of_seqs 561 out of 2783
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 04:28:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000326.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000326hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0170 E3 ubiquitin protein l 100.0 9E-124 2E-128 1070.0 37.0 570 1045-1660 1-572 (621)
2 KOG0168 Putative ubiquitin fus 100.0 6.1E-97 1E-101 887.9 48.1 743 9-791 164-947 (1051)
3 KOG0941 E3 ubiquitin protein l 100.0 7.5E-64 1.6E-68 609.7 26.6 391 1164-1659 403-806 (850)
4 COG5021 HUL4 Ubiquitin-protein 100.0 1.1E-62 2.3E-67 626.0 26.9 384 1212-1658 411-827 (872)
5 KOG0942 E3 ubiquitin protein l 100.0 3.3E-62 7.2E-67 594.7 24.7 341 1244-1658 599-956 (1001)
6 cd00078 HECTc HECT domain; C-t 100.0 5.9E-60 1.3E-64 570.8 27.2 299 1302-1660 2-311 (352)
7 smart00119 HECTc Domain Homolo 100.0 2.3E-57 4.9E-62 542.1 24.7 278 1323-1660 6-293 (336)
8 KOG4427 E3 ubiquitin protein l 100.0 6.2E-55 1.3E-59 515.9 26.8 336 1245-1657 670-1026(1096)
9 KOG0939 E3 ubiquitin-protein l 100.0 1.2E-54 2.6E-59 519.3 21.7 337 1229-1659 323-675 (720)
10 COG5064 SRP1 Karyopherin (impo 100.0 7E-51 1.5E-55 449.5 28.2 387 12-482 71-479 (526)
11 KOG0166 Karyopherin (importin) 100.0 1.1E-48 2.4E-53 469.1 33.0 388 12-483 66-470 (514)
12 PF00632 HECT: HECT-domain (ub 100.0 5.3E-46 1.1E-50 444.9 17.1 262 1348-1660 1-272 (317)
13 KOG0940 Ubiquitin protein liga 100.0 8.3E-33 1.8E-37 325.4 11.5 292 1299-1657 15-321 (358)
14 KOG0943 Predicted ubiquitin-pr 100.0 5.4E-29 1.2E-33 301.6 20.5 206 1417-1645 2739-2959(3015)
15 KOG0166 Karyopherin (importin) 100.0 4E-28 8.6E-33 292.4 22.6 298 11-324 108-415 (514)
16 COG5064 SRP1 Karyopherin (impo 99.9 1.9E-26 4.1E-31 256.3 13.4 295 11-323 113-421 (526)
17 PLN03200 cellulose synthase-in 99.9 2E-24 4.2E-29 293.0 34.2 378 11-482 188-621 (2102)
18 PLN03200 cellulose synthase-in 99.9 2.9E-23 6.3E-28 281.8 33.5 395 13-456 405-811 (2102)
19 KOG4224 Armadillo repeat prote 99.7 1.5E-15 3.3E-20 171.5 22.3 291 13-323 127-424 (550)
20 KOG4224 Armadillo repeat prote 99.6 6.6E-15 1.4E-19 166.4 19.2 262 10-290 165-431 (550)
21 KOG0168 Putative ubiquitin fus 99.6 1.5E-12 3.2E-17 160.6 35.9 175 12-193 211-393 (1051)
22 PF05804 KAP: Kinesin-associat 99.5 2.5E-11 5.3E-16 155.7 33.4 349 50-474 284-666 (708)
23 PF05804 KAP: Kinesin-associat 99.2 2.9E-09 6.2E-14 137.0 30.1 319 73-481 265-587 (708)
24 PF10508 Proteasom_PSMB: Prote 99.2 1.8E-08 3.9E-13 128.2 34.5 366 17-457 43-421 (503)
25 PF04826 Arm_2: Armadillo-like 99.2 5.7E-10 1.2E-14 128.5 17.8 196 52-264 8-206 (254)
26 cd00020 ARM Armadillo/beta-cat 99.1 4E-10 8.6E-15 114.5 11.0 115 52-168 3-120 (120)
27 KOG4199 Uncharacterized conser 99.1 5.2E-09 1.1E-13 118.7 20.4 263 13-286 146-426 (461)
28 KOG1048 Neural adherens juncti 99.1 5.9E-09 1.3E-13 131.0 21.3 266 12-288 233-666 (717)
29 PF10508 Proteasom_PSMB: Prote 99.0 4.8E-08 1E-12 124.3 24.7 252 12-290 3-257 (503)
30 PF04826 Arm_2: Armadillo-like 98.9 2.4E-08 5.3E-13 115.1 17.4 221 10-237 10-245 (254)
31 cd00020 ARM Armadillo/beta-cat 98.9 1.1E-08 2.3E-13 104.0 12.9 118 134-263 2-120 (120)
32 KOG4199 Uncharacterized conser 98.9 5.6E-08 1.2E-12 110.5 18.8 276 21-312 115-414 (461)
33 KOG2122 Beta-catenin-binding p 98.5 8.6E-07 1.9E-11 115.1 13.5 235 46-290 329-586 (2195)
34 PTZ00429 beta-adaptin; Provisi 98.4 0.00016 3.6E-09 95.0 33.5 372 10-462 30-439 (746)
35 PRK09687 putative lyase; Provi 98.4 8.6E-06 1.9E-10 96.1 19.4 212 12-287 23-234 (280)
36 KOG1048 Neural adherens juncti 98.4 1.1E-06 2.5E-11 110.9 11.9 198 57-263 234-452 (717)
37 PRK09687 putative lyase; Provi 98.4 1E-05 2.2E-10 95.4 17.7 208 13-286 55-262 (280)
38 PF01602 Adaptin_N: Adaptin N 98.3 6.7E-05 1.4E-09 96.9 25.3 222 26-286 19-241 (526)
39 KOG2122 Beta-catenin-binding p 98.3 4.3E-06 9.3E-11 108.9 13.2 225 28-265 366-603 (2195)
40 PF01602 Adaptin_N: Adaptin N 98.3 4.4E-05 9.5E-10 98.5 22.7 215 15-265 82-298 (526)
41 cd00256 VATPase_H VATPase_H, r 98.3 9.8E-05 2.1E-09 90.8 23.6 355 55-455 52-424 (429)
42 PTZ00429 beta-adaptin; Provisi 98.2 0.0004 8.7E-09 91.5 29.9 306 54-467 30-337 (746)
43 PF03224 V-ATPase_H_N: V-ATPas 98.2 1.4E-05 3E-10 96.3 15.3 219 56-287 55-294 (312)
44 KOG2160 Armadillo/beta-catenin 98.1 0.00012 2.7E-09 86.1 19.7 190 18-210 87-283 (342)
45 KOG0946 ER-Golgi vesicle-tethe 98.1 0.0012 2.5E-08 83.4 26.8 339 54-457 20-400 (970)
46 KOG4500 Rho/Rac GTPase guanine 98.0 0.00014 3.1E-09 85.8 17.0 231 71-324 56-303 (604)
47 KOG2171 Karyopherin (importin) 98.0 0.0028 6.1E-08 83.8 30.2 436 13-480 37-526 (1075)
48 KOG0946 ER-Golgi vesicle-tethe 97.9 0.0063 1.4E-07 77.1 29.9 270 11-289 21-328 (970)
49 KOG2160 Armadillo/beta-catenin 97.9 0.00074 1.6E-08 79.7 20.6 178 70-261 96-280 (342)
50 KOG1293 Proteins containing ar 97.9 0.0023 5E-08 80.0 25.5 239 15-265 12-263 (678)
51 KOG4500 Rho/Rac GTPase guanine 97.9 0.0057 1.2E-07 72.8 26.6 387 18-480 93-501 (604)
52 KOG1241 Karyopherin (importin) 97.8 0.0045 9.8E-08 78.3 26.3 408 15-470 367-825 (859)
53 cd00256 VATPase_H VATPase_H, r 97.8 0.0011 2.4E-08 81.8 20.6 271 12-294 101-414 (429)
54 KOG1241 Karyopherin (importin) 97.8 0.0057 1.2E-07 77.4 25.8 379 17-466 264-678 (859)
55 PRK13800 putative oxidoreducta 97.7 0.00095 2.1E-08 91.4 20.9 184 12-263 621-804 (897)
56 PF00514 Arm: Armadillo/beta-c 97.7 2.4E-05 5.2E-10 64.5 3.4 40 89-129 2-41 (41)
57 KOG2171 Karyopherin (importin) 97.7 0.0007 1.5E-08 89.1 17.9 238 14-264 350-595 (1075)
58 PF03224 V-ATPase_H_N: V-ATPas 97.7 0.00042 9E-09 83.5 15.0 214 16-237 62-295 (312)
59 PRK13800 putative oxidoreducta 97.7 0.0014 3.1E-08 89.7 21.7 197 11-261 651-865 (897)
60 KOG1293 Proteins containing ar 97.6 0.0092 2E-07 74.8 24.3 205 70-288 22-244 (678)
61 KOG2759 Vacuolar H+-ATPase V1 97.5 0.016 3.5E-07 69.5 24.0 352 56-456 65-438 (442)
62 KOG1222 Kinesin associated pro 97.5 0.0086 1.9E-07 71.8 20.9 231 51-288 299-559 (791)
63 KOG2023 Nuclear transport rece 97.5 0.0045 9.8E-08 77.0 18.6 152 100-262 394-548 (885)
64 PF12348 CLASP_N: CLASP N term 97.4 0.0013 2.8E-08 75.5 12.2 191 22-222 16-216 (228)
65 KOG2759 Vacuolar H+-ATPase V1 97.3 0.017 3.6E-07 69.4 20.2 267 14-291 116-424 (442)
66 COG5215 KAP95 Karyopherin (imp 97.3 0.0066 1.4E-07 74.2 16.6 411 15-481 179-628 (858)
67 KOG2023 Nuclear transport rece 97.2 0.011 2.3E-07 73.8 18.3 245 12-274 10-294 (885)
68 KOG1058 Vesicle coat complex C 97.0 0.37 8E-06 61.6 29.1 330 11-425 19-359 (948)
69 KOG3678 SARM protein (with ste 96.9 0.0051 1.1E-07 73.3 11.4 176 52-234 176-360 (832)
70 PF13646 HEAT_2: HEAT repeats; 96.9 0.0038 8.2E-08 60.1 8.7 87 14-125 1-88 (88)
71 PF13646 HEAT_2: HEAT repeats; 96.9 0.0032 7E-08 60.5 8.0 87 58-164 1-88 (88)
72 KOG4646 Uncharacterized conser 96.8 0.0032 6.8E-08 64.3 7.4 132 99-233 16-149 (173)
73 PF12460 MMS19_C: RNAPII trans 96.8 0.37 8.1E-06 60.6 27.3 376 14-467 1-405 (415)
74 KOG1061 Vesicle coat complex A 96.8 0.073 1.6E-06 68.4 20.6 222 12-266 13-234 (734)
75 COG5215 KAP95 Karyopherin (imp 96.7 0.09 1.9E-06 64.8 19.7 375 19-464 270-676 (858)
76 KOG0213 Splicing factor 3b, su 96.7 0.24 5.2E-06 62.8 23.6 234 11-264 715-955 (1172)
77 PF13513 HEAT_EZ: HEAT-like re 96.7 0.0017 3.6E-08 57.1 3.9 55 71-127 1-55 (55)
78 KOG1222 Kinesin associated pro 96.7 0.067 1.5E-06 64.5 18.0 257 11-289 344-603 (791)
79 KOG1242 Protein containing ada 96.7 1.3 2.8E-05 56.3 29.9 335 12-411 96-443 (569)
80 KOG1059 Vesicle coat complex A 96.7 0.83 1.8E-05 58.4 27.8 70 15-92 147-216 (877)
81 PF05536 Neurochondrin: Neuroc 96.7 0.1 2.2E-06 67.4 21.2 241 107-420 12-269 (543)
82 PF13513 HEAT_EZ: HEAT-like re 96.6 0.0021 4.6E-08 56.4 4.0 54 154-207 2-55 (55)
83 smart00185 ARM Armadillo/beta- 96.5 0.0031 6.7E-08 51.5 4.0 39 90-129 3-41 (41)
84 PF05536 Neurochondrin: Neuroc 96.4 0.072 1.6E-06 68.8 17.5 196 10-210 3-214 (543)
85 KOG1062 Vesicle coat complex A 96.4 1.3 2.9E-05 57.4 27.7 265 109-419 116-386 (866)
86 PF13764 E3_UbLigase_R4: E3 ub 96.4 0.12 2.5E-06 68.8 19.4 227 55-284 116-384 (802)
87 COG5369 Uncharacterized conser 96.3 0.06 1.3E-06 66.0 14.6 199 78-286 410-618 (743)
88 PF00514 Arm: Armadillo/beta-c 96.3 0.0088 1.9E-07 49.3 5.5 41 214-263 1-41 (41)
89 KOG3678 SARM protein (with ste 96.3 0.052 1.1E-06 65.1 13.7 176 11-193 179-361 (832)
90 KOG2274 Predicted importin 9 [ 96.2 0.39 8.4E-06 62.7 22.1 220 58-289 451-672 (1005)
91 PF14664 RICTOR_N: Rapamycin-i 96.0 0.21 4.6E-06 61.5 17.7 154 15-174 28-182 (371)
92 KOG1240 Protein kinase contain 95.9 0.11 2.5E-06 69.0 15.6 276 14-326 464-770 (1431)
93 KOG1824 TATA-binding protein-i 95.9 0.08 1.7E-06 68.7 13.9 224 16-265 9-244 (1233)
94 PF10165 Ric8: Guanine nucleot 95.9 0.1 2.2E-06 66.0 14.9 158 50-207 16-216 (446)
95 COG5181 HSH155 U2 snRNP splice 95.8 0.15 3.2E-06 63.4 15.0 262 100-460 605-874 (975)
96 KOG1991 Nuclear transport rece 95.8 0.8 1.7E-05 60.6 22.2 335 56-468 410-772 (1010)
97 KOG1517 Guanine nucleotide bin 95.7 0.25 5.5E-06 64.9 17.2 265 7-285 467-754 (1387)
98 PF12348 CLASP_N: CLASP N term 95.7 0.064 1.4E-06 61.5 11.1 193 66-273 16-216 (228)
99 TIGR02270 conserved hypothetic 95.6 0.28 6.1E-06 61.2 17.1 151 57-261 55-205 (410)
100 KOG1062 Vesicle coat complex A 95.5 3.2 7E-05 54.1 25.7 220 17-265 112-381 (866)
101 COG1413 FOG: HEAT repeat [Ener 95.5 0.34 7.5E-06 58.9 17.2 187 13-264 44-243 (335)
102 TIGR02270 conserved hypothetic 95.5 0.87 1.9E-05 56.9 20.4 153 13-209 55-207 (410)
103 COG5096 Vesicle coat complex, 95.4 3.7 8E-05 54.3 26.4 168 21-209 28-195 (757)
104 PF05004 IFRD: Interferon-rela 95.4 0.35 7.5E-06 58.3 16.1 193 13-211 44-259 (309)
105 KOG1242 Protein containing ada 95.3 0.18 3.9E-06 63.7 13.5 205 13-237 255-465 (569)
106 PF14664 RICTOR_N: Rapamycin-i 95.3 2 4.3E-05 53.2 22.4 190 34-234 4-197 (371)
107 PF10165 Ric8: Guanine nucleot 95.1 1 2.2E-05 57.2 20.0 232 24-268 43-342 (446)
108 COG5181 HSH155 U2 snRNP splice 95.1 0.43 9.3E-06 59.6 15.5 250 13-298 605-863 (975)
109 KOG1059 Vesicle coat complex A 95.0 1.3 2.8E-05 56.7 19.8 210 21-264 118-366 (877)
110 KOG4646 Uncharacterized conser 95.0 0.088 1.9E-06 54.1 8.1 120 50-171 10-131 (173)
111 PF12460 MMS19_C: RNAPII trans 94.9 0.82 1.8E-05 57.6 18.4 203 14-233 191-414 (415)
112 KOG0213 Splicing factor 3b, su 94.9 0.39 8.4E-06 61.0 14.8 242 14-291 801-1051(1172)
113 KOG1517 Guanine nucleotide bin 94.8 0.41 9E-06 63.0 15.2 232 75-321 488-750 (1387)
114 COG5369 Uncharacterized conser 94.8 0.13 2.9E-06 63.1 10.2 179 51-234 426-617 (743)
115 KOG2137 Protein kinase [Signal 94.5 0.51 1.1E-05 60.8 14.8 259 18-323 279-543 (700)
116 KOG1789 Endocytosis protein RM 94.5 2.9 6.2E-05 55.3 21.0 259 12-290 1771-2144(2235)
117 smart00185 ARM Armadillo/beta- 94.5 0.048 1E-06 44.4 3.9 35 134-168 7-41 (41)
118 PF05918 API5: Apoptosis inhib 94.3 9.1 0.0002 49.3 25.0 155 31-206 2-159 (556)
119 PF12717 Cnd1: non-SMC mitotic 94.1 1.1 2.4E-05 49.6 15.0 109 26-149 1-111 (178)
120 KOG0414 Chromosome condensatio 94.0 0.53 1.1E-05 63.2 13.8 186 28-237 895-1083(1251)
121 KOG1060 Vesicle coat complex A 93.8 31 0.00067 45.4 29.6 180 7-209 30-209 (968)
122 KOG2274 Predicted importin 9 [ 93.6 3.6 7.8E-05 54.3 19.7 202 26-236 504-719 (1005)
123 COG5656 SXM1 Importin, protein 93.5 8.5 0.00018 49.9 22.2 148 55-203 407-565 (970)
124 PF11698 V-ATPase_H_C: V-ATPas 93.3 0.12 2.5E-06 52.9 5.0 72 57-129 44-115 (119)
125 KOG4413 26S proteasome regulat 93.1 3 6.5E-05 48.9 16.2 237 13-263 83-377 (524)
126 KOG1061 Vesicle coat complex A 93.0 0.69 1.5E-05 59.9 12.1 295 57-462 122-421 (734)
127 KOG1824 TATA-binding protein-i 92.6 3.7 8E-05 54.3 17.7 275 9-322 888-1191(1233)
128 PF07814 WAPL: Wings apart-lik 92.5 1.5 3.4E-05 54.0 14.2 254 7-266 16-358 (361)
129 KOG2973 Uncharacterized conser 92.5 8.6 0.00019 45.4 18.8 257 12-288 3-297 (353)
130 KOG0212 Uncharacterized conser 92.4 4.8 0.0001 50.6 17.6 224 26-267 180-410 (675)
131 PF06371 Drf_GBD: Diaphanous G 91.9 0.42 9.1E-06 53.0 7.6 115 10-128 64-186 (187)
132 COG5096 Vesicle coat complex, 91.8 3.1 6.7E-05 55.0 16.2 103 58-169 94-196 (757)
133 PF11864 DUF3384: Domain of un 91.5 12 0.00026 47.9 21.1 196 25-237 82-313 (464)
134 KOG1240 Protein kinase contain 91.4 3.5 7.6E-05 55.8 15.8 211 27-265 437-687 (1431)
135 KOG1820 Microtubule-associated 91.0 5.9 0.00013 53.3 17.7 185 17-210 258-444 (815)
136 KOG2973 Uncharacterized conser 90.8 29 0.00063 41.2 20.6 117 141-274 5-122 (353)
137 KOG3036 Protein involved in ce 90.8 18 0.00038 41.6 18.3 199 7-210 21-248 (293)
138 KOG0212 Uncharacterized conser 90.5 9.8 0.00021 48.0 17.6 178 9-198 247-432 (675)
139 KOG0915 Uncharacterized conser 90.5 44 0.00095 47.2 24.8 221 5-237 933-1184(1702)
140 KOG3665 ZYG-1-like serine/thre 90.5 5.4 0.00012 53.3 16.8 261 12-287 306-678 (699)
141 COG1413 FOG: HEAT repeat [Ener 90.3 3.7 8.1E-05 50.0 14.3 157 12-209 74-242 (335)
142 PF12719 Cnd3: Nuclear condens 90.0 3.3 7.1E-05 49.8 13.3 175 99-289 26-210 (298)
143 PF12755 Vac14_Fab1_bd: Vacuol 90.0 1.5 3.2E-05 43.6 8.5 77 157-237 4-80 (97)
144 KOG1248 Uncharacterized conser 89.4 11 0.00024 51.5 17.9 190 63-268 660-861 (1176)
145 PF11865 DUF3385: Domain of un 89.2 1.7 3.7E-05 47.3 9.1 146 57-209 11-157 (160)
146 PF11841 DUF3361: Domain of un 88.9 3.4 7.3E-05 44.6 10.7 123 51-175 6-138 (160)
147 KOG1060 Vesicle coat complex A 88.7 5.7 0.00012 51.7 14.1 171 70-268 156-355 (968)
148 PF09759 Atx10homo_assoc: Spin 88.7 0.77 1.7E-05 45.9 5.4 60 74-133 3-63 (102)
149 KOG4653 Uncharacterized conser 88.4 9.2 0.0002 50.4 15.8 187 12-210 727-919 (982)
150 KOG4535 HEAT and armadillo rep 88.1 0.86 1.9E-05 55.6 6.2 140 70-209 446-603 (728)
151 KOG4413 26S proteasome regulat 88.0 10 0.00022 44.7 14.3 176 57-238 83-268 (524)
152 KOG2956 CLIP-associating prote 87.9 8.2 0.00018 47.9 14.2 186 12-210 286-478 (516)
153 PF12717 Cnd1: non-SMC mitotic 87.8 12 0.00027 41.3 14.9 110 70-190 1-111 (178)
154 COG5240 SEC21 Vesicle coat com 87.8 8.6 0.00019 48.3 14.3 224 16-270 212-449 (898)
155 PF09759 Atx10homo_assoc: Spin 87.6 1.5 3.2E-05 43.9 6.5 67 155-224 2-71 (102)
156 COG5231 VMA13 Vacuolar H+-ATPa 87.1 9.3 0.0002 45.1 13.4 233 16-263 152-428 (432)
157 PF06025 DUF913: Domain of Unk 87.1 13 0.00028 46.3 15.9 194 76-289 3-209 (379)
158 PF12719 Cnd3: Nuclear condens 87.0 15 0.00032 44.2 16.1 168 56-237 26-209 (298)
159 PF12530 DUF3730: Protein of u 86.8 24 0.00052 40.9 17.1 204 57-289 1-216 (234)
160 PF14668 RICTOR_V: Rapamycin-i 86.8 3 6.6E-05 39.1 7.8 67 197-276 4-70 (73)
161 COG5231 VMA13 Vacuolar H+-ATPa 86.7 13 0.00028 44.0 14.2 255 158-456 168-428 (432)
162 PF05918 API5: Apoptosis inhib 86.7 22 0.00048 46.0 17.8 103 12-129 23-125 (556)
163 PF08569 Mo25: Mo25-like; Int 86.6 18 0.00039 44.2 16.4 218 51-287 71-308 (335)
164 PF11841 DUF3361: Domain of un 86.1 7.9 0.00017 41.9 11.5 128 92-222 4-142 (160)
165 KOG1248 Uncharacterized conser 86.1 34 0.00073 47.1 19.5 246 17-287 658-919 (1176)
166 PF06025 DUF913: Domain of Unk 86.1 19 0.00042 44.7 16.7 123 27-149 70-206 (379)
167 KOG2259 Uncharacterized conser 85.6 8.5 0.00018 49.3 13.0 214 21-266 206-477 (823)
168 KOG2032 Uncharacterized conser 85.6 8.6 0.00019 48.0 12.8 192 11-209 212-415 (533)
169 KOG1967 DNA repair/transcripti 85.5 8 0.00017 51.3 13.1 209 28-257 792-1018(1030)
170 KOG1077 Vesicle coat complex A 85.5 27 0.00058 45.4 17.1 238 16-288 115-380 (938)
171 PF10363 DUF2435: Protein of u 85.3 2.9 6.4E-05 41.1 7.3 84 12-108 3-86 (92)
172 KOG2734 Uncharacterized conser 85.3 35 0.00077 42.2 17.4 276 25-321 89-402 (536)
173 KOG1991 Nuclear transport rece 85.3 1.6E+02 0.0035 40.2 24.8 220 26-264 475-712 (1010)
174 PF02985 HEAT: HEAT repeat; I 85.0 1.4 3.1E-05 34.0 4.0 29 181-209 1-29 (31)
175 PF12755 Vac14_Fab1_bd: Vacuol 84.3 2.2 4.9E-05 42.4 6.0 90 118-208 4-95 (97)
176 KOG1077 Vesicle coat complex A 84.3 17 0.00037 47.0 14.8 121 83-213 315-437 (938)
177 COG5098 Chromosome condensatio 84.2 6.6 0.00014 50.2 11.1 185 55-265 891-1078(1128)
178 KOG1943 Beta-tubulin folding c 83.7 24 0.00053 47.9 16.5 139 70-214 557-710 (1133)
179 KOG1058 Vesicle coat complex C 83.7 82 0.0018 41.6 20.3 95 156-270 376-470 (948)
180 PF12530 DUF3730: Protein of u 83.7 54 0.0012 38.0 18.1 202 14-237 2-215 (234)
181 PF02985 HEAT: HEAT repeat; I 83.4 1.6 3.4E-05 33.7 3.6 30 100-130 1-30 (31)
182 KOG1020 Sister chromatid cohes 83.3 1.8E+02 0.0039 41.5 24.4 144 55-208 815-959 (1692)
183 KOG2259 Uncharacterized conser 83.3 5.3 0.00011 51.1 9.8 143 51-210 368-512 (823)
184 KOG2956 CLIP-associating prote 83.2 31 0.00067 43.0 15.9 187 57-263 287-477 (516)
185 PF14500 MMS19_N: Dos2-interac 81.3 1.2E+02 0.0027 35.8 21.6 235 107-419 6-244 (262)
186 PF11701 UNC45-central: Myosin 79.6 1.8 4E-05 46.9 3.9 140 61-206 8-156 (157)
187 KOG1078 Vesicle coat complex C 79.4 29 0.00064 45.6 14.6 182 57-270 246-428 (865)
188 KOG4535 HEAT and armadillo rep 78.9 3.2 6.9E-05 51.0 5.7 180 73-264 407-604 (728)
189 PF08569 Mo25: Mo25-like; Int 78.3 31 0.00068 42.1 14.1 204 62-290 49-268 (335)
190 COG5240 SEC21 Vesicle coat com 77.9 21 0.00045 45.2 12.2 143 57-209 413-555 (898)
191 PF10521 DUF2454: Protein of u 77.8 9.6 0.00021 45.5 9.5 136 57-193 120-278 (282)
192 PF11698 V-ATPase_H_C: V-ATPas 77.0 6.5 0.00014 40.5 6.6 71 180-262 43-114 (119)
193 KOG0211 Protein phosphatase 2A 77.0 1.9E+02 0.0042 39.2 21.7 239 26-289 172-411 (759)
194 PF11864 DUF3384: Domain of un 76.9 2.1E+02 0.0046 36.8 21.8 113 27-149 4-117 (464)
195 KOG1967 DNA repair/transcripti 76.8 9.2 0.0002 50.8 9.3 144 13-162 868-1018(1030)
196 PF04078 Rcd1: Cell differenti 76.6 33 0.00071 40.1 12.8 197 17-222 2-227 (262)
197 PF14668 RICTOR_V: Rapamycin-i 76.1 7.1 0.00015 36.7 6.1 67 155-225 3-70 (73)
198 KOG0915 Uncharacterized conser 75.6 67 0.0015 45.5 17.0 320 33-436 941-1282(1702)
199 PF12231 Rif1_N: Rap1-interact 75.6 1.2E+02 0.0026 37.7 18.6 182 26-211 6-206 (372)
200 KOG4151 Myosin assembly protei 75.4 25 0.00055 46.4 12.7 219 50-287 498-723 (748)
201 KOG1943 Beta-tubulin folding c 75.2 1.5E+02 0.0033 40.9 19.6 208 13-237 342-594 (1133)
202 PF05004 IFRD: Interferon-rela 75.1 57 0.0012 39.6 15.1 180 113-296 56-248 (309)
203 PF08045 CDC14: Cell division 74.9 47 0.001 39.0 13.6 94 74-168 108-207 (257)
204 PF12031 DUF3518: Domain of un 74.8 21 0.00045 41.1 10.3 121 114-237 80-228 (257)
205 KOG1993 Nuclear transport rece 74.3 26 0.00057 46.1 12.2 287 154-470 502-826 (978)
206 KOG2137 Protein kinase [Signal 73.7 19 0.00042 47.0 10.9 135 52-192 385-520 (700)
207 KOG2999 Regulator of Rac1, req 73.6 29 0.00062 44.0 11.9 157 11-173 82-247 (713)
208 PF10363 DUF2435: Protein of u 72.5 15 0.00032 36.2 7.6 69 141-210 5-73 (92)
209 KOG1789 Endocytosis protein RM 72.2 33 0.00072 46.2 12.3 119 156-289 1742-1866(2235)
210 KOG2611 Neurochondrin/leucine- 70.4 2.3E+02 0.005 35.8 18.1 127 107-237 18-164 (698)
211 KOG0567 HEAT repeat-containing 69.7 1.9E+02 0.0042 34.0 16.5 67 50-128 61-128 (289)
212 KOG3665 ZYG-1-like serine/thre 67.6 2.6E+02 0.0056 37.9 19.9 54 203-267 494-547 (699)
213 COG5116 RPN2 26S proteasome re 66.8 70 0.0015 40.7 13.1 123 98-237 550-674 (926)
214 KOG2734 Uncharacterized conser 66.8 2.5E+02 0.0054 35.2 17.4 218 12-235 125-371 (536)
215 PF03378 CAS_CSE1: CAS/CSE pro 66.0 2.3E+02 0.005 36.1 18.2 282 57-456 27-325 (435)
216 PF06685 DUF1186: Protein of u 65.9 1.3E+02 0.0027 35.4 14.5 151 55-228 30-200 (249)
217 KOG3036 Protein involved in ce 65.6 42 0.0009 38.7 10.1 110 22-132 134-250 (293)
218 PF06371 Drf_GBD: Diaphanous G 65.5 21 0.00046 39.4 8.1 59 191-262 127-186 (187)
219 KOG4151 Myosin assembly protei 65.5 45 0.00097 44.2 11.8 187 72-276 434-626 (748)
220 KOG2025 Chromosome condensatio 65.2 4.6E+02 0.0099 35.0 20.4 62 14-82 128-189 (892)
221 KOG2005 26S proteasome regulat 64.1 3.8E+02 0.0083 35.4 18.8 147 12-164 48-228 (878)
222 PF08167 RIX1: rRNA processing 63.6 40 0.00087 36.9 9.6 95 373-468 58-155 (165)
223 KOG2032 Uncharacterized conser 63.6 1.4E+02 0.003 37.9 14.8 186 54-262 179-370 (533)
224 PF01603 B56: Protein phosphat 63.1 1.9E+02 0.0041 36.6 16.7 241 13-272 134-379 (409)
225 COG5116 RPN2 26S proteasome re 62.5 83 0.0018 40.1 12.6 154 13-191 516-673 (926)
226 PLN03076 ARF guanine nucleotid 61.5 1.5E+02 0.0032 44.0 16.9 202 26-235 1150-1403(1780)
227 KOG1243 Protein kinase [Genera 61.3 1.3E+02 0.0029 39.6 14.7 209 30-263 185-398 (690)
228 KOG1078 Vesicle coat complex C 60.9 1E+02 0.0022 41.1 13.4 142 56-209 391-532 (865)
229 PF14225 MOR2-PAG1_C: Cell mor 60.8 1.2E+02 0.0026 35.9 13.4 150 115-288 77-240 (262)
230 PF12726 SEN1_N: SEN1 N termin 58.4 4.6E+02 0.01 35.8 20.3 129 142-285 444-577 (727)
231 PF04063 DUF383: Domain of unk 57.5 26 0.00056 39.4 6.9 77 99-175 52-139 (192)
232 KOG2062 26S proteasome regulat 57.5 1E+02 0.0022 40.7 12.5 102 13-131 519-620 (929)
233 PF08045 CDC14: Cell division 57.4 88 0.0019 36.8 11.3 196 14-259 5-203 (257)
234 PF14500 MMS19_N: Dos2-interac 57.1 2.3E+02 0.005 33.6 15.0 182 19-211 6-239 (262)
235 PF13764 E3_UbLigase_R4: E3 ub 57.0 1.1E+02 0.0025 41.6 13.7 133 135-274 113-269 (802)
236 KOG0211 Protein phosphatase 2A 56.1 1.2E+02 0.0026 41.0 13.7 209 56-286 437-645 (759)
237 cd03568 VHS_STAM VHS domain fa 56.1 43 0.00093 35.9 8.0 90 162-262 20-109 (144)
238 KOG2062 26S proteasome regulat 55.8 2.3E+02 0.005 37.6 15.2 124 98-237 553-677 (929)
239 PF12031 DUF3518: Domain of un 55.5 42 0.00092 38.7 8.0 78 28-105 139-222 (257)
240 KOG0301 Phospholipase A2-activ 53.9 1.2E+02 0.0027 39.6 12.4 60 26-87 557-618 (745)
241 PF04063 DUF383: Domain of unk 53.4 1.1E+02 0.0024 34.5 11.0 82 194-289 72-160 (192)
242 PF01347 Vitellogenin_N: Lipop 52.6 1.4E+02 0.0031 39.7 13.9 117 140-262 396-518 (618)
243 PF08167 RIX1: rRNA processing 52.4 68 0.0015 35.1 9.0 94 141-234 27-125 (165)
244 PF13251 DUF4042: Domain of un 52.2 1.2E+02 0.0027 33.8 11.0 140 29-168 2-174 (182)
245 KOG2999 Regulator of Rac1, req 51.9 1.6E+02 0.0034 37.8 12.6 160 101-274 85-254 (713)
246 KOG2933 Uncharacterized conser 51.6 59 0.0013 38.8 8.6 166 11-189 87-257 (334)
247 KOG0567 HEAT repeat-containing 51.5 57 0.0012 38.1 8.3 95 14-132 156-252 (289)
248 KOG1566 Conserved protein Mo25 51.5 5.2E+02 0.011 31.3 17.7 222 28-290 35-271 (342)
249 smart00638 LPD_N Lipoprotein N 51.1 2E+02 0.0044 37.9 14.9 143 57-220 358-517 (574)
250 PF04821 TIMELESS: Timeless pr 51.0 1.3E+02 0.0029 35.6 11.8 161 57-237 14-190 (266)
251 PF09324 DUF1981: Domain of un 50.5 85 0.0019 30.5 8.3 70 379-453 14-85 (86)
252 PF11865 DUF3385: Domain of un 50.5 79 0.0017 34.5 9.1 111 15-128 13-156 (160)
253 PF11701 UNC45-central: Myosin 50.1 23 0.00051 38.4 4.9 113 12-127 42-157 (157)
254 KOG1243 Protein kinase [Genera 49.5 75 0.0016 41.8 9.8 111 96-209 327-437 (690)
255 PF14225 MOR2-PAG1_C: Cell mor 49.0 4.5E+02 0.0098 31.2 15.6 213 18-265 13-256 (262)
256 PF10521 DUF2454: Protein of u 48.7 66 0.0014 38.4 8.9 35 140-174 120-154 (282)
257 KOG1820 Microtubule-associated 47.9 3.2E+02 0.0069 37.6 15.6 183 59-263 256-443 (815)
258 smart00638 LPD_N Lipoprotein N 47.7 1.1E+02 0.0024 40.3 11.7 176 9-207 354-543 (574)
259 PF12830 Nipped-B_C: Sister ch 46.4 1E+02 0.0022 34.5 9.4 73 13-93 9-81 (187)
260 PF13251 DUF4042: Domain of un 45.2 1.3E+02 0.0028 33.7 9.7 117 11-130 38-175 (182)
261 cd03569 VHS_Hrs_Vps27p VHS dom 43.0 90 0.002 33.4 7.9 76 178-263 39-114 (142)
262 KOG1992 Nuclear export recepto 42.8 8.2E+02 0.018 33.4 17.3 377 32-482 334-735 (960)
263 PF06012 DUF908: Domain of Unk 42.4 7.3E+02 0.016 30.4 16.9 70 194-270 233-304 (329)
264 cd03569 VHS_Hrs_Vps27p VHS dom 41.4 1.5E+02 0.0032 31.8 9.2 111 12-130 3-115 (142)
265 PF01347 Vitellogenin_N: Lipop 40.8 1.7E+02 0.0037 38.9 12.0 173 11-206 394-586 (618)
266 smart00288 VHS Domain present 40.6 1.1E+02 0.0023 32.4 7.9 77 177-262 34-110 (133)
267 COG5110 RPN1 26S proteasome re 40.4 8E+02 0.017 31.8 16.0 151 10-163 45-229 (881)
268 KOG0392 SNF2 family DNA-depend 40.1 2.1E+02 0.0046 40.1 12.0 114 139-263 208-325 (1549)
269 PF07923 N1221: N1221-like pro 38.7 4.4E+02 0.0096 31.7 13.8 71 52-149 56-126 (293)
270 KOG2611 Neurochondrin/leucine- 37.6 9.9E+02 0.021 30.6 16.5 185 17-208 16-224 (698)
271 KOG2933 Uncharacterized conser 37.2 1.2E+02 0.0026 36.4 8.2 143 57-210 89-235 (334)
272 PF08713 DNA_alkylation: DNA a 37.1 2.2E+02 0.0047 32.1 10.5 167 28-224 29-196 (213)
273 PF04078 Rcd1: Cell differenti 36.5 4.6E+02 0.01 31.0 12.7 144 109-264 4-169 (262)
274 COG5098 Chromosome condensatio 36.2 1.5E+02 0.0032 38.9 9.2 145 11-169 890-1038(1128)
275 PF00790 VHS: VHS domain; Int 36.0 65 0.0014 34.2 5.5 76 177-262 39-117 (140)
276 PF12830 Nipped-B_C: Sister ch 35.6 3.1E+02 0.0068 30.6 11.1 129 141-287 10-141 (187)
277 KOG1993 Nuclear transport rece 34.8 8.5E+02 0.019 33.1 15.7 248 16-282 530-832 (978)
278 PRK14707 hypothetical protein; 34.8 2E+03 0.044 33.4 28.1 384 13-480 374-762 (2710)
279 cd03567 VHS_GGA VHS domain fam 34.5 1.2E+02 0.0027 32.2 7.3 81 177-262 35-115 (139)
280 PF11816 DUF3337: Domain of un 33.1 73 0.0016 39.0 6.1 25 1044-1069 291-315 (331)
281 PF11081 DUF2890: Protein of u 32.0 95 0.0021 34.6 6.0 55 371-425 116-175 (187)
282 PF08324 PUL: PUL domain; Int 31.4 1.9E+02 0.004 34.1 9.0 119 112-233 122-252 (268)
283 KOG0170 E3 ubiquitin protein l 31.3 26 0.00056 43.9 1.7 65 1211-1275 128-192 (621)
284 PF04388 Hamartin: Hamartin pr 30.4 9.9E+02 0.022 32.3 16.3 137 100-264 5-141 (668)
285 PF14631 FancD2: Fanconi anaem 30.3 3.6E+02 0.0078 39.6 12.8 150 55-209 430-583 (1426)
286 PF00790 VHS: VHS domain; Int 30.2 2.2E+02 0.0047 30.3 8.3 113 11-131 3-120 (140)
287 cd03568 VHS_STAM VHS domain fa 29.7 1.1E+02 0.0023 32.9 5.9 80 9-89 34-113 (144)
288 KOG4653 Uncharacterized conser 29.5 6.2E+02 0.013 34.6 13.3 185 70-273 740-928 (982)
289 PF14764 SPG48: AP-5 complex s 28.4 4.3E+02 0.0093 33.8 11.5 121 150-272 279-405 (459)
290 PF12397 U3snoRNP10: U3 small 28.3 1.5E+02 0.0032 30.5 6.5 69 57-131 7-76 (121)
291 PF08324 PUL: PUL domain; Int 28.0 84 0.0018 37.0 5.3 125 151-284 122-252 (268)
292 PF07814 WAPL: Wings apart-lik 27.9 7.3E+02 0.016 30.8 13.6 90 59-149 24-116 (361)
293 PF08454 RIH_assoc: RyR and IP 27.7 1.7E+02 0.0037 29.9 6.6 92 192-287 5-107 (109)
294 PF10350 DUF2428: Putative dea 27.7 4.4E+02 0.0095 31.0 11.1 65 94-170 161-228 (255)
295 KOG0414 Chromosome condensatio 27.7 2.3E+02 0.005 39.6 9.5 161 12-191 918-1082(1251)
296 PF12054 DUF3535: Domain of un 27.5 97 0.0021 39.5 6.0 60 8-69 308-367 (441)
297 PF01603 B56: Protein phosphat 27.5 1.2E+03 0.026 29.5 15.6 218 28-266 41-287 (409)
298 PF12074 DUF3554: Domain of un 26.8 9.5E+02 0.021 29.3 14.3 215 54-288 20-256 (339)
299 cd03561 VHS VHS domain family; 26.7 3E+02 0.0065 28.9 8.6 77 178-263 35-112 (133)
300 PF10274 ParcG: Parkin co-regu 26.7 1.9E+02 0.0042 32.3 7.3 74 13-89 39-112 (183)
301 PF14726 RTTN_N: Rotatin, an a 26.7 2.8E+02 0.006 27.9 7.7 96 28-126 2-97 (98)
302 COG5656 SXM1 Importin, protein 26.5 6.7E+02 0.015 33.7 12.7 168 57-237 372-551 (970)
303 PRK14707 hypothetical protein; 26.3 2.7E+03 0.058 32.2 28.2 340 12-434 120-465 (2710)
304 cd03567 VHS_GGA VHS domain fam 26.2 1E+02 0.0023 32.8 5.0 46 436-481 47-92 (139)
305 COG5209 RCD1 Uncharacterized p 25.9 1.1E+03 0.023 27.4 15.3 181 26-209 60-268 (315)
306 PF08767 CRM1_C: CRM1 C termin 25.5 9.6E+02 0.021 29.2 13.8 59 178-236 163-225 (319)
307 KOG2038 CAATT-binding transcri 24.0 2E+03 0.042 29.8 16.8 288 14-326 232-597 (988)
308 KOG2256 Predicted protein invo 23.9 7E+02 0.015 33.1 12.3 197 57-266 242-460 (661)
309 KOG0803 Predicted E3 ubiquitin 23.3 8.3E+02 0.018 35.5 13.9 76 10-88 39-114 (1312)
310 KOG4524 Uncharacterized conser 23.3 2.6E+02 0.0056 38.4 8.6 103 175-287 798-900 (1014)
311 PF10257 RAI16-like: Retinoic 22.8 4.8E+02 0.01 32.3 10.7 140 93-234 3-181 (353)
312 KOG2073 SAP family cell cycle 22.7 1.1E+03 0.024 32.7 14.4 40 52-91 186-225 (838)
313 smart00288 VHS Domain present 22.4 1.7E+02 0.0037 30.8 5.8 46 436-481 46-91 (133)
314 KOG2199 Signal transducing ada 22.3 2.5E+02 0.0054 34.7 7.5 73 160-235 26-98 (462)
315 PF10274 ParcG: Parkin co-regu 22.3 2.6E+02 0.0056 31.3 7.2 52 159-210 58-110 (183)
316 PF12726 SEN1_N: SEN1 N termin 22.3 6.8E+02 0.015 34.2 12.9 143 13-168 442-585 (727)
317 PF11229 DUF3028: Protein of u 22.1 1.8E+03 0.039 28.7 16.8 253 15-286 45-330 (589)
318 KOG1410 Nuclear transport rece 22.0 1.2E+03 0.026 31.1 13.5 144 101-261 7-155 (1082)
319 cd03561 VHS VHS domain family; 22.0 2.3E+02 0.005 29.8 6.6 78 10-89 35-115 (133)
320 PF08506 Cse1: Cse1; InterPro 21.9 1.9E+02 0.0042 36.0 7.0 124 73-204 227-370 (370)
321 PF04821 TIMELESS: Timeless pr 21.8 8.9E+02 0.019 28.7 12.2 59 13-86 14-72 (266)
322 KOG1020 Sister chromatid cohes 21.4 5.8E+02 0.013 37.0 11.5 125 139-288 816-940 (1692)
323 PF11707 Npa1: Ribosome 60S bi 21.0 1.6E+03 0.034 27.5 19.1 151 58-210 58-238 (330)
324 KOG2073 SAP family cell cycle 21.0 5.9E+02 0.013 35.1 11.4 197 70-288 159-377 (838)
325 PF08389 Xpo1: Exportin 1-like 20.5 4.2E+02 0.0091 27.5 8.4 49 153-204 100-148 (148)
No 1
>KOG0170 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-124 Score=1070.00 Aligned_cols=570 Identities=52% Similarity=0.835 Sum_probs=491.9
Q ss_pred eEEEEECCeecCCCccHHHHHHHHhhcccccccccCCCCccCCCCCCCcccceEEEEEeCCCccccccCCCCCCCCCCCC
Q 000326 1045 KLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERFGGSDFISSDGSRLWNDIYTITYQRADSQADRMSAGVSSSATPSKS 1124 (1661)
Q Consensus 1045 ~l~f~~~g~~l~~~~Ti~~av~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ti~y~~~~~~~~~~~~~~~~~~~~~~~ 1124 (1661)
+|.|++.|+.+++++|+||||+|+..+.+++ ..++ +. .... |+.+|||+|++-+.......+++.+...++.+
T Consensus 1 ~l~f~~~g~~l~~~~t~yqav~~~~~~~e~e----~~s~-s~-~~~~-~~~t~~~~~~~~d~~~n~~~vg~~s~~~~~~~ 73 (621)
T KOG0170|consen 1 RLQFYIGGHLLPRNLTVYQAVRQFSIQAEDE----DESN-PL-GRGG-WNKTYTIWYQREDSESNKDCVGGKRGRAQTAP 73 (621)
T ss_pred CceEEeccccccccchHHHHHHHHhhhcccc----ccCC-cc-ccCc-chhhhhhhhhccchhhhhcccccccccccCCc
Confidence 4789999999999999999999998887643 1112 11 2233 99999999997554433334433222222222
Q ss_pred CCCCCCCCCCCccccccchhhhhccCCCCCCccCCCChHHHHHHHHHHHHhhhhchhhhhcccccccccccccccccccC
Q 000326 1125 SKSGSASNSNSDSASRMSLLDSILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELSG 1204 (1661)
Q Consensus 1125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lL~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1204 (1661)
++.........+.+|..+.+...+. ..+..++.++++.|+|+ ....+|.. ++++..
T Consensus 74 ~~~~~~n~~~~~~~h~~~~~~~~~~-----~~e~~~~~~~~i~l~rv--~~~~~~~~-----------------l~d~~~ 129 (621)
T KOG0170|consen 74 TKTSPTNKKHDELSHDPSVSNPLLV-----PLENINPSLDVILLLRV--AIEGYWYY-----------------LDDLAM 129 (621)
T ss_pred ccccCcCCchhhccCChhhcccccc-----chhhcCchHHHHHHHhh--cccchhhh-----------------hhhhhh
Confidence 2222111111122332222221111 23334578899999998 33444433 334444
Q ss_pred CCCCCCchhhhcccchHHHHHHHHHHHHHhcCCCchhHHhhhcCCCcccChhHHHHHHHhhhhchHHHHHHHHHhccCCC
Q 000326 1205 TGVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADG 1284 (1661)
Q Consensus 1205 ~~~~~~~~~F~~~kl~~kl~rql~~~l~~~s~~lp~w~~~l~~~~PFlfpfe~R~~~f~~~~fg~~R~i~~l~~~~~~~~ 1284 (1661)
..+++|.++|+|+|||+|++||++||+++|+|.+|+||.+|++.|||||||+||+.|||+|+||++|++++|++.++.+.
T Consensus 130 ~~~~vp~sefiNsKLt~Kl~rql~d~l~v~sg~lp~w~~~L~~~cpfLfpf~Tr~~~f~~taFg~~R~~~~~k~~s~~~~ 209 (621)
T KOG0170|consen 130 CKEIVPTSEFINSKLTAKLARQLQDPLVVASGALPDWSLFLTRRCPFLFPFDTRMLYFYSTAFGLSRAIQLLKNKSKGSK 209 (621)
T ss_pred hhcCCChHHHHHHHhhHHHHHHhcCcceeecCCCChhhhhhhhcCCeeccHHHHHHHHHHHHhhhhhHHHHHhhcccCCC
Confidence 55889999999999999999999999999999999999999999999999999999999999999999999999887666
Q ss_pred CCCCcchhhhcCccceeEEEEcCchHHHHHHHHHhhccCCcceEEEEEcCCcccCccchHHHHHHHHHHHhccCCCCccc
Q 000326 1285 HGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRS 1364 (1661)
Q Consensus 1285 ~~~~~~~~~~~grl~r~kv~V~R~~il~~a~~~l~~~~~~~~~LeV~F~gE~G~g~GptrEFf~lvs~el~~~~l~lf~~ 1364 (1661)
+.+.++...+.||++|+|++|+|++||++|.++|++|++++.+|||+|++|+|+|+|||+|||++||+||++++++|||+
T Consensus 210 ~~s~~e~~~~~grL~RkK~risR~~Il~sa~kvm~~ygss~~vLEIEY~~EvGTGLGPTLEFYtlVSk~fq~~sLgmWR~ 289 (621)
T KOG0170|consen 210 DGSNDEALQQLGRLTRKKLRISRKTILASALKVMEKYGSSKAVLEIEYEEEVGTGLGPTLEFYTLVSKEFQRASLGMWRC 289 (621)
T ss_pred CCCchHHhHhhcccchhhhhhhHHHHHHHHHHHHHHhcCCcceEEEEeccccccCCCcceeeHHHHHHHHhhcccccccc
Confidence 66667777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccCCCCCCCCCCCCCCCccccCCCCccCCCCCCCCCccCCCchhhHHHHHHhhhhhHHhhhcCCcccccC
Q 000326 1365 NSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPF 1444 (1661)
Q Consensus 1365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yv~~~~gLfP~P~~~~~~~~~~~~~~~~~~~F~~lG~llakAl~d~~~ldl~f 1444 (1661)
+.- .+.+ +++ .++..||..+.||||.||++....+++ .++.++|++||+||||||+|+|++|+||
T Consensus 290 ~s~----s~~~-------~k~-~~~t~~v~~~sgLFp~P~~~ts~~se~---~kvi~~F~~LG~~vAkal~D~Rildlpl 354 (621)
T KOG0170|consen 290 NSV----SYRS-------GKP-QENTKDVYITSGLFPRPWPPTSNSSEN---EKVIELFRLLGTFVAKALQDGRILDLPL 354 (621)
T ss_pred Cce----eecc-------CCC-CCCcchhhhccccCCCCCCCCCCchhH---HHHHHHHHHHHHHHHHHHhcCceEeeec
Confidence 753 2222 222 457889999999999999998766554 6899999999999999999999999999
Q ss_pred cHHHHHHHhCCCCCcCchhhccHHHHHHHHHHHHHHhhhhhhhccccCcchhhhccccCCCccccccceeecCCCCceee
Q 000326 1445 STAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYIL 1524 (1661)
Q Consensus 1445 s~~f~K~llg~~~tl~DL~~vDp~l~~sL~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iedL~L~Ftl~g~~~ieL 1524 (1661)
+++|||+++|++++..|+..|||+++++|.+|...+.+|+.++...|+...+..+++++||.||||+|+||+||+++|||
T Consensus 355 s~~Fykl~l~q~Lt~~dv~~vd~~l~~sL~~Le~vv~~k~~~~~~~~d~~~a~~dltl~g~~iEdL~LdFTLPG~p~ieL 434 (621)
T KOG0170|consen 355 SKAFYKLILGQELTSHDVTTVDPELAKSLLELELVVPRKKKLEKYIGDVANADDDLTLNGCSIEDLSLDFTLPGFPDIEL 434 (621)
T ss_pred cHHHHHHHhcCCcccccceecCHHHHHHHHHHHHHhhhhhhhhhhcccccccccceeecCcchhhceeeEecCCCCCeee
Confidence 99999999999999999999999999999999999999999988888888899999999999999999999999999999
Q ss_pred CCCCc--ccccccHHHHHHHHHHHHHHhcHHHHHHHHHhhcccccccccccCCCHHHHHHhhcCCCCccCHHHHhhhcEe
Q 000326 1525 KPGDE--NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKF 1602 (1661)
Q Consensus 1525 ~pgG~--~VT~~N~~eYv~lv~~~~L~~~v~~q~~afr~GF~~V~p~~~L~~Fsp~EL~~ll~G~~e~wd~e~L~~~~~~ 1602 (1661)
+|||+ +||..|++|||+.|++|++++||.+|++|||.||++|||++.|++|+|+||+.|+||..++|+.++|++|+++
T Consensus 435 ~p~g~~~~V~~~NleEYi~~VId~tv~kGVqkQleAFr~GF~~VF~~~~Lqif~p~EL~~llcg~~e~ws~~TL~~~i~~ 514 (621)
T KOG0170|consen 435 IPGGANKPVTISNLEEYIHGVIDATVGKGVQKQLEAFRSGFSSVFPYEHLQIFTPEELVTLLCGVEEDWSMATLMEHIKA 514 (621)
T ss_pred ccCCCCCccccccHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhheeecCHHHHHHHhccchhhccHHHHHHhccc
Confidence 99999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCChHHHHHHHHHhcCCHHHHHHhcccccCCCCCCcCCccCCCCceEEEecCC
Q 000326 1603 DHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKVA 1660 (1661)
Q Consensus 1603 ~~Gyt~~s~~i~~Fwevl~~fs~eerr~FLqFvTGs~rLP~gGf~~L~P~ltIvrk~~ 1660 (1661)
|||||++||+|+.|++||+.|+.+|||.||||||||||||+|||++|||||||||||+
T Consensus 515 DHGYT~~Sp~i~~li~ils~f~~~qQR~FLQFvTGSprLPiGGfasLNPklTIVrKh~ 572 (621)
T KOG0170|consen 515 DHGYTMDSPIIHDLISILSAFDKEQQRLFLQFVTGSPRLPIGGFASLNPKLTIVRKHA 572 (621)
T ss_pred ccCccCCCcHHHHHHHHhhhhchHHHHHHHHHhcCCCCCCCCcccccCCCeEEEeccC
Confidence 9999999999999999999999999999999999999999999999999999999997
No 2
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-97 Score=887.91 Aligned_cols=743 Identities=47% Similarity=0.638 Sum_probs=594.6
Q ss_pred cccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccC
Q 000326 9 HQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVL 88 (1661)
Q Consensus 9 ~~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~ 88 (1661)
+.++++++|+++|+...|+..|++|+.+||++|+|+|++++..|+++.+||.||.||++++|++||+.|||||+|||++.
T Consensus 164 sasSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl 243 (1051)
T KOG0168|consen 164 SASSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVL 243 (1051)
T ss_pred cchHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhc
Confidence 34569999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhccCChHHHHHHHHHHHHhcc
Q 000326 89 PSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCK 168 (1661)
Q Consensus 89 p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~ 168 (1661)
|+.+..+|++++||+|++||+.|+|+||+||+++||++|+++|+.+|+++|+|.++|+|||||++++||.|+.+++|||.
T Consensus 244 P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 244 PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCCh
Q 000326 169 KLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLST 248 (1661)
Q Consensus 169 ~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~ 248 (1661)
+.+.++|..+.+++|+|..+|++.|.++++.+|.|+.+|+++|.|.+++++.++++|+|.++++||... ++.++.
T Consensus 324 si~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt-----~t~Ls~ 398 (1051)
T KOG0168|consen 324 SIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVT-----PTILSN 398 (1051)
T ss_pred cCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcC-----cccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999876 677899
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhcccCCCCCC-CCCC
Q 000326 249 PTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQ-GTIS 327 (1661)
Q Consensus 249 ~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~-~~~~ 327 (1661)
.+++.++++|..+|++++-....+++.||..+|..+|+++.+.++.+....+.+.++++++++.||.+|||+++. |+|.
T Consensus 399 ~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~ 478 (1051)
T KOG0168|consen 399 GTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFA 478 (1051)
T ss_pred cchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceee
Confidence 999999999999999999999999999999999999999999999998899999999999999999999999998 4553
Q ss_pred CCc---------cc--ccccc---CC------------cccCCCCCCCCCCCCCCCCcchhhhHHHhhccCHHHHHHHHH
Q 000326 328 LPS---------SS--NMFVK---GP------------VVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGM 381 (1661)
Q Consensus 328 ~~~---------~~--~~~~~---g~------------~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~f~~ 381 (1661)
+.. .+ .|.++ |. .++.+..+.+.++. .+...++|+.+++++||++++|++
T Consensus 479 ~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~----dkl~~~~r~~~l~nqpel~q~F~~ 554 (1051)
T KOG0168|consen 479 VDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQ----DKLNGSAREGLLKNQPELLQSFGK 554 (1051)
T ss_pred hhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhh----hhcCCchhhhhhhcCHHHHHHHHH
Confidence 311 01 11121 21 11111111111111 111237899999999999999999
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHhhcCCHHHHHHHhhhcchHHHHHHHhhcCCCchHHhHHHHHHHHHhhCchh
Q 000326 382 DLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGT 461 (1661)
Q Consensus 382 ~l~p~Li~vy~ss~~~~VR~~~L~~i~r~v~~~~~~~L~~~l~~~~~ss~la~il~~~d~~l~~~aL~i~~~Ll~K~pd~ 461 (1661)
.|||+|||||++++++.||||||+||+||+||+++++|+++|++.+++||||+||+++|+.++++|||++++||+|+||+
T Consensus 555 ~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~ 634 (1051)
T KOG0168|consen 555 DLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDT 634 (1051)
T ss_pred HHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHhhcHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCcccCCCCCcCCCCC-CC
Q 000326 462 FSKMFVREGVVHAVDQLILAGNTNTVPSQASSADKDNDSIPGSSRSRRYRRRSGNANPECNSSEESKNPVSVNVGSP-PS 540 (1661)
Q Consensus 462 f~~~f~REGV~~~I~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 540 (1661)
|.++|+||||||+|++|+...+.....+ ++++. ..++.....+.++++..+-+..-.++. +.+ ..
T Consensus 635 F~~~F~REGV~~~v~~L~~~~~~~~~~p-----dk~~n-~~gS~~s~~~~~~ss~~~~~~~~see~--------~~pslt 700 (1051)
T KOG0168|consen 635 FSPSFRREGVFHAVKQLSVDSNPIDANP-----DKANN-ENGSADSEEGDSSSSITECDEHQSEEL--------GYPSLT 700 (1051)
T ss_pred hhhhHhhhhHHHHHHHHhccCCccccCC-----CcccC-CCCccccCCCccccccccccccchhcc--------CCcccc
Confidence 9999999999999999998654433221 11111 111222222222222111111000111 111 11
Q ss_pred CcccCCCcch-------hhHHHHHHHHHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHhhccccchhcccCCccccCCc
Q 000326 541 SVEIPTVNSN-------LRSAVSASAKAFKEKYFPSDPGAAEVGVTDHLLHIKNLCMKLNAGVDDQRTKAKGKSKASGSR 613 (1661)
Q Consensus 541 ~~~~p~~~~~-------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 613 (1661)
+...|....+ .|..+..+||.|..+||++.. ..+.++.+..++++...+.......+++..|+.
T Consensus 701 ~~~~~~s~~~pk~s~~l~R~~~~~~ak~~~p~~~p~~~---~~~~~d~~~~~knl~s~~s~~l~~~np~~~gk~------ 771 (1051)
T KOG0168|consen 701 HSEQPDSVKPPKISDHLLRTRSPKRAKNFGPKYFPSRL---DQGVTDQLANLKNLHSILSSFLASLNPATWGKT------ 771 (1051)
T ss_pred cccCCCccCCchhHHHHHHhhhhhhhhccCCCCCCchh---hhhhhHhhhhhhhhcchhhhhhcccCCCCCCcc------
Confidence 1122222222 233445567778888998733 356778888999998888766555444333321
Q ss_pred ccccchhhHH--HHHHHHHHHHHhhcCCCccccccccccchHHHHHHhhccCcchh--hhhHHHHHHHHHHHHHHHHhHh
Q 000326 614 LADISATKEE--YLIGVISEMLAELSTGDGVSTFEFIGSGVVAALLNYFSCGYKER--MSEANMLKLRQQALKRFKSFIA 689 (1661)
Q Consensus 614 ~~~~~~~~e~--~~~~~l~~l~~~l~~~~~ISsFEl~~SGLV~sLl~~Ls~~~~~~--~~~~~~~~~~~~~~~~f~~F~~ 689 (1661)
++ .|.++|..+...+.+.+.||+|||.++|++++|.+|++.+.+.+ ..+......+++.++.|+.|.+
T Consensus 772 --------e~~~f~g~~~s~~~~~l~g~~~vS~~~l~~~~~~~sisnr~s~~~~sre~~~k~~~~~~e~e~~r~l~vl~~ 843 (1051)
T KOG0168|consen 772 --------EEQPFWGNIWSVLKERLAGDFDVSGFELTEAGVADSISNRESSGTWSREQAAKLVLRYFEQEILRFLNVLQE 843 (1051)
T ss_pred --------cccccccchhhhhhhhhcCCcccchhhhhHHHHHHHHHhhhhcchhhHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 22 38899999999999999999999999999999999999988543 2222223344455555566665
Q ss_pred hccCCCCCCCCCChHHHHHHHHHHHhhcccccceEeccCCCCCCCCCCCCcccccccCc-eEEE-EeecCCCCCcCCCCC
Q 000326 690 VALPNSLDAGDVAPMTVLVQKLQNALSSLERFPVVLSHSARSSTGSARLSSGLSALSQP-FKLR-LCRAQGDKSLRDYSS 767 (1661)
Q Consensus 690 ~~~~~~~~~~~~~pl~~LV~KLq~aLsr~E~FpV~~s~~~~~~~~~~~~~s~~s~Lskq-lKlr-L~~~~d~~~l~~~~~ 767 (1661)
++..-.-..+...+...++.|||++|+.+|+||++++|++..-++....++|...++.+ +|+| +-.......+.+|.-
T Consensus 844 v~t~l~~~ng~v~~~~~~i~~lqssLs~~e~~p~vlsh~~~~kn~~~~lsSg~t~~s~~~i~~~~fl~~f~~~ple~~~~ 923 (1051)
T KOG0168|consen 844 VLTRLLWLNGSVVDCGLLIQKLQSSLSSLEKFPFVLSHSGSKKNILAYLSSGETILSVPCIRLRTFLHVFLRLPLEPMLQ 923 (1051)
T ss_pred HHHHHHhhcCccCcHHHHHHHHHHHHHhhhcCceEecCchhhhhhhhhcccCcchhhhHHHHHHHHHHHHhcCCchhhcc
Confidence 54332212345567999999999999999999999998765444445566665555433 4433 111222345667888
Q ss_pred CeEEEccccCHHHHHHhhhhhhcc
Q 000326 768 NVVLIDPLASLAAVEEFLWPRVQR 791 (1661)
Q Consensus 768 ~~VsIhpiAT~~aLe~yL~~Rv~~ 791 (1661)
..|.|.|++...+..+|.|+.+..
T Consensus 924 ~~~~v~~l~~~~~~a~~~~~~~cl 947 (1051)
T KOG0168|consen 924 PNVQVPPLTSSPAEADVEKENNCL 947 (1051)
T ss_pred ccccCCCccccchhhhhhcccCCc
Confidence 889999999999999999888775
No 3
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-64 Score=609.66 Aligned_cols=391 Identities=31% Similarity=0.509 Sum_probs=327.0
Q ss_pred HHHHHHHHHHHhhhhchhhhhcccccccccccccccccccCCCCCCCchhhhcccchHHHHHHHHHHHH-HhcCCCchhH
Q 000326 1164 TILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELSGTGVRVPYEEFINSKLTPKLARQIQDALA-LCSGSLPSWC 1242 (1661)
Q Consensus 1164 ~il~lL~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~kl~~kl~rql~~~l~-~~s~~lp~w~ 1242 (1661)
..+.+|..||..|.. ...||++.|++.-|...++-+.+-..- .......+||
T Consensus 403 ~~l~~~~lly~vN~~---------------------------~~lip~e~FY~~~l~~~id~~~dy~~w~~~~~~~fsfc 455 (850)
T KOG0941|consen 403 SALKLLELLYKVNCR---------------------------KGLIPYEEFYNEELNDRIDMKEDYVHWRTKQMNCFSFC 455 (850)
T ss_pred hHHHHHHHHHHHhcc---------------------------CCCCCHHHhhhHHHHhHHHHHHHHHHHHHHhcccceee
Confidence 567788888887722 156899999999999988755443322 2233367888
Q ss_pred HhhhcCCCcccChhHHHHHHHhhhhchHHHHHHHHHhccCCCCCCCc-chhhhcCccceeEEEEcCchHHHHHHHHHhhc
Q 000326 1243 YQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVN-EREIRVGRLERQKVRVSRNRILDSAAKVMEMY 1321 (1661)
Q Consensus 1243 ~~l~~~~PFlfpfe~R~~~f~~~~fg~~R~i~~l~~~~~~~~~~~~~-~~~~~~grl~r~kv~V~R~~il~~a~~~l~~~ 1321 (1661)
+|||||+--+|..+++..+ ++++...+..+.-.. ....+...-++.+++|||++|++||+++|+.+
T Consensus 456 -----~ypFIL~~~aK~~lL~yD~--------rlrM~~~~~~a~~~s~~~~~~~~~~p~l~l~VrR~~lv~Dsl~~l~~~ 522 (850)
T KOG0941|consen 456 -----NYPFILNAVAKIELLQYDA--------RLRMESERRKAFLSSLFQGLQLLVSPYLKLTVRRDHLVEDALRQLSMI 522 (850)
T ss_pred -----cCCeecccHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhccCCCCCcEEEEEehhhhHHHHHHHHHhh
Confidence 7999999999999999764 333322111000000 00000003478999999999999999999988
Q ss_pred c--CCcceEEEEEcCCcccCc-cchHHHHHHHHHHHhccCCCCcccCCCCCCCCccccCCCCCCCCCCCCCCCccccCCC
Q 000326 1322 S--SQKAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLG 1398 (1661)
Q Consensus 1322 ~--~~~~~LeV~F~gE~G~g~-GptrEFf~lvs~el~~~~l~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yv~~~~g 1398 (1661)
. +.+++|+|+|.||+|+|+ |+++|||.++.+|+++|++|||.+.++ ..++
T Consensus 523 ~~~Dl~K~L~V~F~gE~g~DaGGv~kEfF~ll~~ei~~p~~GmF~~~e~----------------------s~~~----- 575 (850)
T KOG0941|consen 523 SMSDLKKQLKVEFVGEEGVDAGGVRKEFFQLLVEEIFNPEYGMFTYDEE----------------------SSLL----- 575 (850)
T ss_pred hhhhhhcceEEEECCCcccccCchHHHHHHHHHHHHcCccccCeecccc----------------------ccee-----
Confidence 6 479999999999999999 799999999999999999999999876 2344
Q ss_pred CccCCCCCCCCCccCCCchhhHHHHHHhhhhhHHhhhcCCcccccCcHHHHHHHhCCCCCcCchhhccHHHHHHHHHHHH
Q 000326 1399 LFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHV 1478 (1661)
Q Consensus 1399 LfP~P~~~~~~~~~~~~~~~~~~~F~~lG~llakAl~d~~~ldl~fs~~f~K~llg~~~tl~DL~~vDp~l~~sL~~L~~ 1478 (1661)
||+. .+. ....+|+++|++||+|||++.++|+|||.+|||+|++.+++++||.++.|.++++|+.|++
T Consensus 576 WF~~-~~~-----------~~~~~y~liGil~GLAIyN~~ildlpFPlAlykkLl~~~~sl~DL~elsP~~~~sL~~lL~ 643 (850)
T KOG0941|consen 576 WFNP-SPF-----------EEEKQYHLIGILCGLAIYNNTILDLPFPLALYKKLLDKPPSLEDLKELSPSLGKSLKELLD 643 (850)
T ss_pred eecC-CCC-----------CccceeeehhHHHHHHHhccceecCCCcHHHHHHHhcCCCCHHHHHhhChHhhhhHHHHHh
Confidence 3422 111 1224899999999999999999999999999999999999999999999999999999998
Q ss_pred HHhhhhhhhccccCcchhhhccccCCCcccc-ccceeecC----C-CCceeeCCCCc--ccccccHHHHHHHHHHHHHHh
Q 000326 1479 IVCRKQHLESMTSDNCEEVVDLRFRGAPIED-LCLDFTLP----G-YPDYILKPGDE--NVDINNLEEYISLVVDATVKT 1550 (1661)
Q Consensus 1479 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~ied-L~L~Ftl~----g-~~~ieL~pgG~--~VT~~N~~eYv~lv~~~~L~~ 1550 (1661)
+ .|+++|| ++|+|++. | ..+++|+|||. +||.+|++|||++|++|.++.
T Consensus 644 y-----------------------~gdd~ed~f~l~F~i~~~~~g~~~~~~L~~nG~~i~vt~~Nr~efV~~Yvd~~~n~ 700 (850)
T KOG0941|consen 644 Y-----------------------EGDDVEDVFDLTFQISQDDNGIPRTYELKPNGDEIPVTNENRREFVNLYVDYILNK 700 (850)
T ss_pred c-----------------------cccchhhheeeEEEEEehhcCccceeeccCCCcccccccccHHHHHHHHHHHHHhh
Confidence 5 3445554 99999986 2 24789999999 999999999999999999999
Q ss_pred cHHHHHHHHHhhcccccccccccCCCHHHHHHhhcCCCCccCHHHHhhhcEecCCCCCCChHHHHHHHHHhcCCHHHHHH
Q 000326 1551 GIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRA 1630 (1661)
Q Consensus 1551 ~v~~q~~afr~GF~~V~p~~~L~~Fsp~EL~~ll~G~~e~wd~e~L~~~~~~~~Gyt~~s~~i~~Fwevl~~fs~eerr~ 1630 (1661)
.|++|++||++||++|+....|++|.|+||+.++||+++ +||+.|++.|+|++||+.+||+|+|||++++.|+.++||+
T Consensus 701 sv~~q~~aF~~GF~~v~~~~~l~lf~peEl~~li~G~~~-~Dw~~l~~~~~Y~ggy~~~~~~I~~FWe~~~~~~~~~kkk 779 (850)
T KOG0941|consen 701 SVKKQFEAFRRGFYKVCDENLLRLFQPEELEKLICGSED-YDWKALEETTEYDGGYTSDSPTIQWFWEIFHAFTLEEKKK 779 (850)
T ss_pred hHHHHHHHHHHHHHHHhchhhhhhcCHHHHHHHHhCCCc-cCHHHHhhhceecCcccCCChHHHHHHHHHHhCCHHHhhh
Confidence 999999999999999999999999999999999999998 7999999999999999999999999999999999999999
Q ss_pred hcccccCCCCCCcCCccCCCCceEEEecC
Q 000326 1631 FCQFVTGAPRLPPGGLAVLNPKLTIVRKV 1659 (1661)
Q Consensus 1631 FLqFvTGs~rLP~gGf~~L~P~ltIvrk~ 1659 (1661)
||+|+|||+|+|++|+++| +|+|.+-.
T Consensus 780 fL~F~TGsdRipv~G~~~l--~~~i~~~~ 806 (850)
T KOG0941|consen 780 FLQFLTGSDRIPVGGLAKL--KLVIQKNG 806 (850)
T ss_pred heEeecCCCccccCChhhc--eEEEecCC
Confidence 9999999999999999999 78887654
No 4
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-62 Score=626.04 Aligned_cols=384 Identities=28% Similarity=0.417 Sum_probs=321.7
Q ss_pred hhhhcccchHHHHHHHHHHHHHhcCCCchhHHhhhcCCCcccChhHHHHHHHhhhhchHHHHHHHHHhccCCCCCCC---
Q 000326 1212 EEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSV--- 1288 (1661)
Q Consensus 1212 ~~F~~~kl~~kl~rql~~~l~~~s~~lp~w~~~l~~~~PFlfpfe~R~~~f~~~~fg~~R~i~~l~~~~~~~~~~~~--- 1288 (1661)
..++......++.++.-+++.+++.+.+.|. ....|+++++++|...++...|...|...-+............
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~r~~~~~~~~~~~h~k~~~~~~~~~~g~~~~~~~~ 487 (872)
T COG5021 411 SSTYEDLRREQLGRESDESFYVASNVQQQRA---SREGPLLSGWKTRLNNLYRFYFVEHRKKTLTKNDSRLGSFISLNKL 487 (872)
T ss_pred hhhhhchhhhhhhhhhccchhhhcccccccc---cccccccchHHHHhhhhheeeehhcccceeeecCCCCchhhhhchh
Confidence 3456666777888899999999999999997 6789999999999999998887766543221111100000000
Q ss_pred -------c-chhh-----hc--CccceeEEEEcCchHHHHHHHHHhhccC--CcceEEEEEcCCcccCc-cchHHHHHHH
Q 000326 1289 -------N-EREI-----RV--GRLERQKVRVSRNRILDSAAKVMEMYSS--QKAVLEVEYFGEVGTGL-GPTLEFYTLL 1350 (1661)
Q Consensus 1289 -------~-~~~~-----~~--grl~r~kv~V~R~~il~~a~~~l~~~~~--~~~~LeV~F~gE~G~g~-GptrEFf~lv 1350 (1661)
+ .+.+ +. ...+..+++|+|++|++|++..+...+. .++.|+|+|.||+|+|. |+|||||.++
T Consensus 488 ~~~r~~~~~r~~l~~~~~~~~~~~~~~l~I~VrRd~vf~Dsy~~i~~~~~~~~k~~L~i~F~~EeGiD~GGltrE~~~lL 567 (872)
T COG5021 488 DIRRIKEDKRRKLFYSLKQKAKIFDPYLHIKVRRDRVFEDSYREIMDESGDDLKKTLEIEFVGEEGIDAGGLTREWLFLL 567 (872)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccCcceEEEEecccchHHHHHHHHHhchhhhcceEEEEecCcccccCCccchHHHHHH
Confidence 0 0000 00 1124678999999999999998877653 46679999999999999 7999999999
Q ss_pred HHHHhccCCCCcccCCCCCCCCccccCCCCCCCCCCCCCCCccccCCCCccCCCCCCCCCccCCCchhhHHHHHHhhhhh
Q 000326 1351 SRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVM 1430 (1661)
Q Consensus 1351 s~el~~~~l~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yv~~~~gLfP~P~~~~~~~~~~~~~~~~~~~F~~lG~ll 1430 (1661)
++++++|+++||.+... +.| .++|+|.+.. + .+++++|+|+|++|
T Consensus 568 s~~~Fnp~y~LF~y~t~----------------------d~~-----~~~~n~~s~~-----n---pe~L~yf~fiGrvI 612 (872)
T COG5021 568 SKEMFNPDYGLFEYITE----------------------DLY-----TLPINPLSSI-----N---PEHLSYFKFLGRVI 612 (872)
T ss_pred hHHhcCCcccceeeecc----------------------ccc-----ccCcCccccC-----C---HHHHHHHHHHHHHH
Confidence 99999999999998765 111 3455555441 1 58999999999999
Q ss_pred HHhhhcCCcccccCcHHHHHHHhCCCCCcCchhhccHHHHHHHHHHHHHHhhhhhhhccccCcchhhhccccCCCccccc
Q 000326 1431 AKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDL 1510 (1661)
Q Consensus 1431 akAl~d~~~ldl~fs~~f~K~llg~~~tl~DL~~vDp~l~~sL~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iedL 1510 (1661)
|+||||+++||++|+++|||+||+.+++++|+..+||++|++|.||+++ +.+. ..+
T Consensus 613 GkaIyd~~~LD~~F~~~fyKklL~~~~sl~Dl~s~Dpe~y~sLv~ll~~-----------------------~~d~-~~l 668 (872)
T COG5021 613 GKAIYDSRILDVQFSKAFYKKLLGKPVSLVDLESLDPELYRSLVWLLNN-----------------------DIDE-TIL 668 (872)
T ss_pred HHHHHhcceeeecchHHHHHHHhCCCCchhhhhhcCHHHHHHHHHHHcC-----------------------CCCc-cee
Confidence 9999999999999999999999999999999999999999999999984 1111 168
Q ss_pred cceeecC----C-CCceeeCCCCc--ccccccHHHHHHHHHHHHHHhcHHHHHHHHHhhcccccccccccCCCHHHHHHh
Q 000326 1511 CLDFTLP----G-YPDYILKPGDE--NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHL 1583 (1661)
Q Consensus 1511 ~L~Ftl~----g-~~~ieL~pgG~--~VT~~N~~eYv~lv~~~~L~~~v~~q~~afr~GF~~V~p~~~L~~Fsp~EL~~l 1583 (1661)
+|+|++. | ...|||||||+ +||.+|+.+||.+|++|+|+++|++|++||..||++|||..+|.+|+++||+.|
T Consensus 669 ~l~Fsve~~~fg~~~tVeLipnG~ni~VT~~Nk~eYV~~vvdy~L~k~ie~Q~~AF~~GF~~ii~~~~i~iF~e~ELe~L 748 (872)
T COG5021 669 DLTFTVEDDSFGESRTVELIPNGRNISVTNENKKEYVKKVVDYKLNKRVEKQFSAFKSGFSEIIPPDLLQIFDESELELL 748 (872)
T ss_pred eeeEEEeecccCceeEEEeccCCccccccchHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHhcCHHHHhhcCHHHHHHH
Confidence 8888875 3 36799999999 999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCccCHHHHhhhcEecCCCCCCChHHHHHHHHHhcCCHHHHHHhcccccCCCCCCcCCccCCCC-----ceEEEec
Q 000326 1584 LCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNP-----KLTIVRK 1658 (1661)
Q Consensus 1584 l~G~~e~wd~e~L~~~~~~~~Gyt~~s~~i~~Fwevl~~fs~eerr~FLqFvTGs~rLP~gGf~~L~P-----~ltIvrk 1658 (1661)
|||.++++|+++|+++|.| |||+++||+|+|||++|++|+.|+|++|||||||++|+|++|||+|+| +|+|.+-
T Consensus 749 I~G~~e~iDidd~K~~T~Y-~GY~~~s~~I~wFWeii~~f~~eer~klLQFvTGtsriPi~GFk~L~~~~~~~kf~I~~~ 827 (872)
T COG5021 749 IGGIPEDIDIDDWKSNTAY-HGYTEDSPIIVWFWEIISEFDFEERAKLLQFVTGTSRIPINGFKDLQGSDGVRKFTIEKG 827 (872)
T ss_pred HCCCCccccHHHHhhcccc-cccccCCcHHHHHHHHHHHhCHHHHhhhheeccCCCCCCCCChhhcCCCcccceeeeecC
Confidence 9999986799999999999 899999999999999999999999999999999999999999999999 5555543
No 5
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-62 Score=594.68 Aligned_cols=341 Identities=30% Similarity=0.486 Sum_probs=301.5
Q ss_pred hhhcCCCcccChhHHHHHHHhhhhchHHHHHHHHHhccCCCCCCCcchhhhcCccceeEEEEcCchHHHHHHHHHhhcc-
Q 000326 1244 QLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYS- 1322 (1661)
Q Consensus 1244 ~l~~~~PFlfpfe~R~~~f~~~~fg~~R~i~~l~~~~~~~~~~~~~~~~~~~grl~r~kv~V~R~~il~~a~~~l~~~~- 1322 (1661)
.+++++||++||+.|..+|+. .|..=++..+.+ .. .|+.....++|||++|++||+..|...+
T Consensus 599 ~IL~e~PF~vPF~~RVklfq~-------lla~dKq~~~~~-------~~--F~~g~s~~~tIRRd~iyeDAfd~f~p~~e 662 (1001)
T KOG0942|consen 599 CILKEIPFFVPFEERVKLFQR-------LLALDKQRHGGD-------GP--FGMGFSPSATIRRDHIYEDAFDAFSPKGE 662 (1001)
T ss_pred HHHHcCCeeechHHHHHHHHH-------HHHHHHHhhcCC-------CC--ccCCCCccEEEehhhhHHHHHHhcCccCC
Confidence 478899999999999999995 232222221111 11 2333336799999999999999998776
Q ss_pred -CCcceEEEEEcC-----CcccCc-cchHHHHHHHHHHHhccCCCCcccCCCCCCCCccccCCCCCCCCCCCCCCCcccc
Q 000326 1323 -SQKAVLEVEYFG-----EVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHA 1395 (1661)
Q Consensus 1323 -~~~~~LeV~F~g-----E~G~g~-GptrEFf~lvs~el~~~~l~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yv~~ 1395 (1661)
+.|+.++|+|++ |.|+|. |.+|||.+.++++-++|++|+|+.++.
T Consensus 663 ~dlk~~iRVtfVne~G~~EaGIDGGGIfkEFLtel~ktaFdpn~GlF~~T~~---------------------------- 714 (1001)
T KOG0942|consen 663 PDLKSSIRVTFVNEHGVDEAGIDGGGIFKEFLTELLKTAFDPNYGLFKETED---------------------------- 714 (1001)
T ss_pred cccccceEEEEecccCccccCccCcccHHHHHHHHHHhhcCccccceeeccc----------------------------
Confidence 458889999987 556666 799999999999999999999998865
Q ss_pred CCCCccCCCCCCCCCccCCCchhhHHHHHHhhhhhHHhhhcCCcccccCcHHHHHHHhCCCC--CcCchhhccHHHHHHH
Q 000326 1396 PLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHEL--DLHDIIPFDAEFGKIL 1473 (1661)
Q Consensus 1396 ~~gLfP~P~~~~~~~~~~~~~~~~~~~F~~lG~llakAl~d~~~ldl~fs~~f~K~llg~~~--tl~DL~~vDp~l~~sL 1473 (1661)
+-|||+|-.+..- + ...+++|+|||+++|||||+|.++|+||+.+|.++++|..- +++||..+||++|+.|
T Consensus 715 -~lLYPNp~~~~l~--~----~~~lkhy~FLGrllGK~iYE~iLvdvpFA~FFlaKllg~~~~vd~~dL~SlDPeLY~nL 787 (1001)
T KOG0942|consen 715 -HLLYPNPTAAMLL--D----VDCLKHYYFLGRLLGKCIYEGILVDVPFAEFFLAKLLGTSNDVDLHDLASLDPELYKNL 787 (1001)
T ss_pred -ceecCCCCchhhh--h----hHHHHHHHHHHHHHHHHHHhcceecccHHHHHHHHHhCCCCCCChhhhcccCHHHHHHH
Confidence 2589999776421 1 35789999999999999999999999999999999999865 9999999999999999
Q ss_pred HHHHHHHhhhhhhhccccCcchhhhccccCCCccccccceeecC----C-CCceeeCCCCc--ccccccHHHHHHHHHHH
Q 000326 1474 QELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLP----G-YPDYILKPGDE--NVDINNLEEYISLVVDA 1546 (1661)
Q Consensus 1474 ~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iedL~L~Ftl~----g-~~~ieL~pgG~--~VT~~N~~eYv~lv~~~ 1546 (1661)
..|++| +|+++++|.|+||+- | ...+||+|||. +||.+|+.+||++|++|
T Consensus 788 ifLk~y-----------------------~gddi~eL~L~FtVv~~e~G~~~vVeLkPnGs~i~VTneNvi~YihLVsnY 844 (1001)
T KOG0942|consen 788 IFLKNY-----------------------NGDDISELQLDFTVVNSELGERQVVELKPNGSKIRVTNENVIEYIHLVSNY 844 (1001)
T ss_pred HHHHhc-----------------------CCCchhhccceEEEeccccccceeEEeccCCccceeechhhhhhhHHhhhh
Confidence 999985 677899999999985 3 26799999999 99999999999999999
Q ss_pred HHHhcHHHHHHHHHhhcccccccccccCCCHHHHHHhhcCCCCccCHHHHhhhcEecCCCCCCChHHHHHHHHHhcCCHH
Q 000326 1547 TVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPD 1626 (1661)
Q Consensus 1547 ~L~~~v~~q~~afr~GF~~V~p~~~L~~Fsp~EL~~ll~G~~e~wd~e~L~~~~~~~~Gyt~~s~~i~~Fwevl~~fs~e 1626 (1661)
+|+.+|++|+.||++||..|||++||.||++.||+.||+|.++.+|++||+++|+|.+||+++||+|.+|||||.+|+.|
T Consensus 845 ~LN~rir~~c~AFr~Gls~II~~eWl~MF~~~ELQiLIsG~~~pidldDLr~~teY~Ggy~~~hp~Iv~FWeVl~~F~~e 924 (1001)
T KOG0942|consen 845 KLNQRIRRQCSAFRKGLSQIISPEWLRMFNEHELQILISGAEDPIDLDDLRKNTEYAGGYSPDHPTIVMFWEVLEEFSDE 924 (1001)
T ss_pred HHHHHHHHHHHHHhcchhhcCCHHHHHhhChhheeeeecCCcCcccHHHHHhhccccCCCCCCCCchhHHHHHHHhcchH
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred HHHHhcccccCCCCCCcCCccCCCCceEEEec
Q 000326 1627 QQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRK 1658 (1661)
Q Consensus 1627 err~FLqFvTGs~rLP~gGf~~L~P~ltIvrk 1658 (1661)
+||+||+|||||+|.|+.|||+|.|+|+|..-
T Consensus 925 dKr~fLKFVTscsRpPllGFK~L~P~FcI~n~ 956 (1001)
T KOG0942|consen 925 DKRKFLKFVTSCSRPPLLGFKALDPAFCIRNA 956 (1001)
T ss_pred HHHHHHHHHhcCCCcccccchhcCccceeeeC
Confidence 99999999999999999999999999999864
No 6
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains.
Probab=100.00 E-value=5.9e-60 Score=570.78 Aligned_cols=299 Identities=42% Similarity=0.691 Sum_probs=276.0
Q ss_pred EEEEcCchHHHHHHHHHhhcc--CCcceEEEEEcCCcccCc-cchHHHHHHHHHHHhccCCCCcccCCCCCCCCccccCC
Q 000326 1302 KVRVSRNRILDSAAKVMEMYS--SQKAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGD 1378 (1661)
Q Consensus 1302 kv~V~R~~il~~a~~~l~~~~--~~~~~LeV~F~gE~G~g~-GptrEFf~lvs~el~~~~l~lf~~~~~~~~~~~~~~~~ 1378 (1661)
+++|+|++|++|++++|..+. ..+.+|+|+|.||.|+|. ||+||||+++++|+++++++||+.++++
T Consensus 2 ~i~v~R~~i~~~~~~~l~~~~~~~l~~~l~V~F~gE~g~D~GG~~rE~~~~l~~el~~~~~~lF~~~~~~---------- 71 (352)
T cd00078 2 KITVRRDRILEDALRQLSKVSSSDLKKVLEVEFVGEEGIDAGGVTREFFTLVSKELFNPSYGLFRYTPDD---------- 71 (352)
T ss_pred eEEEECCcHHHHHHHHHHhcCHHHhcCceEEEECCCCccCCCcchHHHHHHHHHHHcCCCCCCeeecCCC----------
Confidence 689999999999999998876 568899999999999996 8999999999999999999999987651
Q ss_pred CCCCCCCCCCCCCccccCCCCccCCCCCCCCCccCCCchhhHHHHHHhhhhhHHhhhcCCcccccCcHHHHHHHhCCCCC
Q 000326 1379 EGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELD 1458 (1661)
Q Consensus 1379 ~~~~~~~~~~~~~yv~~~~gLfP~P~~~~~~~~~~~~~~~~~~~F~~lG~llakAl~d~~~ldl~fs~~f~K~llg~~~t 1458 (1661)
..++||+|..... ..++++|+|+|++||+||+++.+++++||++|||+|+|.+++
T Consensus 72 -----------------~~~~~~~p~~~~~--------~~~~~~f~~~G~lig~al~~~~~l~l~f~~~f~k~L~g~~~t 126 (352)
T cd00078 72 -----------------SGLLYPNPSSFAD--------EDHLKLFRFLGRLLGKALYEGRLLDLPFSRAFYKKLLGKPLS 126 (352)
T ss_pred -----------------CceEEeCCCcccc--------hhHHHHHHHHHHHHHHHHHcCceeCCCCCHHHHHHHhCCCCC
Confidence 1367888876521 357899999999999999999999999999999999999999
Q ss_pred cCchhhccHHHHHHHHHHHHHHhhhhhhhccccCcchhhhccccCCCccccccceeecC------CCCceeeCCCCc--c
Q 000326 1459 LHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLP------GYPDYILKPGDE--N 1530 (1661)
Q Consensus 1459 l~DL~~vDp~l~~sL~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iedL~L~Ftl~------g~~~ieL~pgG~--~ 1530 (1661)
++||+++||++|++|++|+++ +. .+++++|+|++. +..++||+|||+ +
T Consensus 127 ~~Dl~~iD~~~~~sl~~l~~~-----------------------~~-~~~~l~l~F~~~~~~~~~~~~~veL~~~G~~~~ 182 (352)
T cd00078 127 LEDLEELDPELYKSLKELLDN-----------------------DG-DEDDLELTFTIELDSSFGGAVTVELKPGGRDIP 182 (352)
T ss_pred HHHHHHhCHHHHHHHHHHHhc-----------------------CC-chhhhcceeEEEEeecCCCcceEecCCCCCCCc
Confidence 999999999999999999874 11 257789999853 457899999999 9
Q ss_pred cccccHHHHHHHHHHHHHHhcHHHHHHHHHhhcccccccccccCCCHHHHHHhhcCCCCccCHHHHhhhcEecCCCCCCC
Q 000326 1531 VDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKS 1610 (1661)
Q Consensus 1531 VT~~N~~eYv~lv~~~~L~~~v~~q~~afr~GF~~V~p~~~L~~Fsp~EL~~ll~G~~e~wd~e~L~~~~~~~~Gyt~~s 1610 (1661)
||.+|+++||+++++|+++++++.|++|||+||++|+|...|++|+|+||+.++||.++ ||+++|+++++|+|||+.++
T Consensus 183 VT~~N~~eYv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~lvcG~~~-id~~~l~~~~~y~~~~~~~~ 261 (352)
T cd00078 183 VTNENKEEYVDLYVDYRLNKGIEEQVEAFRDGFSEVIPEELLSLFTPEELELLICGSED-IDLEDLKKNTEYKGGYSSDS 261 (352)
T ss_pred CCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHcCHHhhhCCCHHHHHHHhCCCCC-CCHHHHHhceEecCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999965 79999999999999999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHhcccccCCCCCCcCCccCCCCceEEEecCC
Q 000326 1611 PAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKVA 1660 (1661)
Q Consensus 1611 ~~i~~Fwevl~~fs~eerr~FLqFvTGs~rLP~gGf~~L~P~ltIvrk~~ 1660 (1661)
++|+|||+||++||++||++||+|+|||+|||+|||++|+|+|||+++.+
T Consensus 262 ~~i~~Fw~vl~~~s~eer~~fL~F~TG~~rlP~~G~~~l~~~i~i~~~~~ 311 (352)
T cd00078 262 PTIQWFWEVLESFTNEERKKFLQFVTGSSRLPVGGFADLNPKFTIRRVGS 311 (352)
T ss_pred HHHHHHHHHHHhCCHHHHHHhheeecCCCCCCCcchhhcCCCeEEEECCC
Confidence 99999999999999999999999999999999999999999999999865
No 7
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with. E3 ubiquitin-protein ligases. Can bind to E2 enzymes.
Probab=100.00 E-value=2.3e-57 Score=542.13 Aligned_cols=278 Identities=39% Similarity=0.639 Sum_probs=251.9
Q ss_pred CCcce-EEEEEcCCcccCc-cchHHHHHHHHHHHhccCCCCcccCCCCCCCCccccCCCCCCCCCCCCCCCccccCCCCc
Q 000326 1323 SQKAV-LEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLF 1400 (1661)
Q Consensus 1323 ~~~~~-LeV~F~gE~G~g~-GptrEFf~lvs~el~~~~l~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yv~~~~gLf 1400 (1661)
+.+++ |+|+|.||.|+|. ||+||||+++++|+++|+++||++.+++ .++|
T Consensus 6 ~~~~~~l~V~F~gE~g~d~gG~~rEf~~~l~~el~~~~~~lf~~~~~~----------------------------~~~~ 57 (336)
T smart00119 6 DLKKSVLEIEFEGEEGLDGGGVTREFFFLLSKELFNPDYGLFRYSPND----------------------------YLLY 57 (336)
T ss_pred HhCCCeEEEEECCCCCccCCchHHHHHHHHHHHHhCcccCCceEcCCC----------------------------CeEE
Confidence 34556 9999999999877 8999999999999999999999987541 2688
Q ss_pred cCCCCCCCCCccCCCchhhHHHHHHhhhhhHHhhhcCCcccccCcHHHHHHHhCCCCCcCchhhccHHHHHHHHHHHHHH
Q 000326 1401 PRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIV 1480 (1661)
Q Consensus 1401 P~P~~~~~~~~~~~~~~~~~~~F~~lG~llakAl~d~~~ldl~fs~~f~K~llg~~~tl~DL~~vDp~l~~sL~~L~~~~ 1480 (1661)
|+|..... ...++++|+++|++||+||+++.++|++||++|||+|+|.+++++||+++||+++++|++|+..
T Consensus 58 ~~p~~~~~-------~~~~l~~f~~~G~lig~al~~~~~~~l~f~~~f~k~L~~~~~tl~Dl~~~D~~~~~sl~~l~~~- 129 (336)
T smart00119 58 PNPRAFFA-------NPEHLAYFRFIGRVLGKALYDNRLLDLFFARPFYKKLLGKPVTLHDLESLDPELYKSLKWLLLN- 129 (336)
T ss_pred eCCCcccc-------chHHHHHHHHHHHHHHHHHHcCCeeCCCCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHHh-
Confidence 88865421 1357899999999999999999999999999999999999999999999999999999999521
Q ss_pred hhhhhhhccccCcchhhhccccCCCccccccceeec------CCCCceeeCCCCc--ccccccHHHHHHHHHHHHHHhcH
Q 000326 1481 CRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTL------PGYPDYILKPGDE--NVDINNLEEYISLVVDATVKTGI 1552 (1661)
Q Consensus 1481 ~~~~~~~~~~~~~~~~~~~l~~~~~~iedL~L~Ftl------~g~~~ieL~pgG~--~VT~~N~~eYv~lv~~~~L~~~v 1552 (1661)
.+..++++|+|++ ++..++||+|||+ +||.+|+++||+++++|++..++
T Consensus 130 -----------------------~~~~~~~~l~F~~~~~~~~g~~~~~eL~~~G~~~~Vt~~N~~eYv~~~~~~~l~~~~ 186 (336)
T smart00119 130 -----------------------NDTSEELDLTFSIVLTSEFGQVKVVELKPGGSNIPVTEENKKEYVHLVIEYRLNKGI 186 (336)
T ss_pred -----------------------CCCcccccceEEEEeeecCCCcceEecCCCCCCCcCCHHHHHHHHHHHHHHHHhhhH
Confidence 0122457888873 4567899999999 99999999999999999999999
Q ss_pred HHHHHHHHhhcccccccccccCCCHHHHHHhhcCCCCccCHHHHhhhcEecCCCCCCChHHHHHHHHHhcCCHHHHHHhc
Q 000326 1553 MRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFC 1632 (1661)
Q Consensus 1553 ~~q~~afr~GF~~V~p~~~L~~Fsp~EL~~ll~G~~e~wd~e~L~~~~~~~~Gyt~~s~~i~~Fwevl~~fs~eerr~FL 1632 (1661)
+.|++|||+||++|+|.+.|++|+|+||+.++||.++ ||+++|+++++|+|||+.++++|+|||+||++||++||++||
T Consensus 187 ~~~~~afr~Gf~~vip~~~l~~f~~~eL~~licG~~~-i~~~~l~~~~~~~~g~~~~~~~i~~Fw~vl~~~s~ee~~~fL 265 (336)
T smart00119 187 EKQLEAFREGFSEVIPENLLRLFTPEELELLICGSPE-IDVDDLKSNTEYKGGYSENSQTIKWFWEVVESFTNEERRKLL 265 (336)
T ss_pred HHHHHHHHHHHHHHcCHHHhhCCCHHHHHHHhCCCCC-CCHHHHhhheEEcCCCCCCCHHHHHHHHHHHHCCHHHHHHhh
Confidence 9999999999999999999999999999999999987 799999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCcCCccCCCCceEEEecCC
Q 000326 1633 QFVTGAPRLPPGGLAVLNPKLTIVRKVA 1660 (1661)
Q Consensus 1633 qFvTGs~rLP~gGf~~L~P~ltIvrk~~ 1660 (1661)
+|+||++|+|+|||+.|+|+|||+++..
T Consensus 266 ~F~TG~~rlP~~G~~~l~~~~~i~~~~~ 293 (336)
T smart00119 266 QFVTGSSRLPVGGFAALSPKFTIRKAGS 293 (336)
T ss_pred eeccCCCCCCCCchhhcCCceEEEECCC
Confidence 9999999999999999999999999753
No 8
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-55 Score=515.87 Aligned_cols=336 Identities=26% Similarity=0.477 Sum_probs=294.9
Q ss_pred hhcCCCcccChhHHHHHHHhhhhchHHHHHHHHHhc---cCCCCCCCcchhhhcCccceeEEEEcCchHHHHHHHHHhhc
Q 000326 1245 LTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQ---GADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMY 1321 (1661)
Q Consensus 1245 l~~~~PFlfpfe~R~~~f~~~~fg~~R~i~~l~~~~---~~~~~~~~~~~~~~~grl~r~kv~V~R~~il~~a~~~l~~~ 1321 (1661)
|++..|.+||+|.|+.+|+. ..|... +.-+.... .|+. ...+.|+|++|+||.+++++..
T Consensus 670 ll~~mpHviP~edRv~lFR~----------fVqkdKa~~~lv~ts~a------~p~~-~t~IvvrR~rivEDGf~qL~~l 732 (1096)
T KOG4427|consen 670 LLTKMPHVIPHEDRVLLFRE----------FVQKDKASRGLVETSDA------SPAR-STEIVVRRGRIVEDGFQQLNSL 732 (1096)
T ss_pred EeccCCcccChHHHHHHHHH----------HHhhhHHhhcccccccC------Cccc-eeEEEEEcccchhhHHHHHHhc
Confidence 45568999999999999984 233322 11111110 1111 2568999999999999999988
Q ss_pred cC--CcceEEEEEcCCc-----ccCc-cchHHHHHHHHHHHhccCCCCcccCCCCCCCCccccCCCCCCCCCCCCCCCcc
Q 000326 1322 SS--QKAVLEVEYFGEV-----GTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLV 1393 (1661)
Q Consensus 1322 ~~--~~~~LeV~F~gE~-----G~g~-GptrEFf~lvs~el~~~~l~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yv 1393 (1661)
+. .|+.++|.|++|. |+|. |+.+||...+.+..|+|.++||..++. +
T Consensus 733 ~~~alKs~IrVkFVNeqGl~EAGiDqdGvfKEFLeeiiKkvFdp~lnLFstTs~-d------------------------ 787 (1096)
T KOG4427|consen 733 GSPALKSVIRVKFVNEQGLDEAGIDQDGVFKEFLEEIIKKVFDPELNLFSTTST-D------------------------ 787 (1096)
T ss_pred cchhhhceEEEEEecccCCcccccCccchHHHHHHHHHHHHhcccccccccCCC-C------------------------
Confidence 74 6999999998854 5666 899999999999999999999988753 1
Q ss_pred ccCCCCccCCCCCCCCCccCCCchhhHHHHHHhhhhhHHhhhcCCcccccCcHHHHHHHhCCCC--CcCchhhccHHHHH
Q 000326 1394 HAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHEL--DLHDIIPFDAEFGK 1471 (1661)
Q Consensus 1394 ~~~~gLfP~P~~~~~~~~~~~~~~~~~~~F~~lG~llakAl~d~~~ldl~fs~~f~K~llg~~~--tl~DL~~vDp~l~~ 1471 (1661)
.-|||.|.+.. .+.++++|+|+||++|||+|+|+.+|+||+++|+..|||..- .++.|..+||++|+
T Consensus 788 ---~~LyPSPts~~--------~en~lqlfeFvGrmlGKAvYEGIvvDv~fa~vflsqlLG~~~~s~~DELs~LDpElYr 856 (1096)
T KOG4427|consen 788 ---RRLYPSPTSYH--------HENHLQLFEFVGRMLGKAVYEGIVVDVPFASVFLSQLLGRHSLSFIDELSSLDPELYR 856 (1096)
T ss_pred ---ceecCCchhhh--------hhchhHHHHHHHHHHHHHHhcceEEecccHHHHHHHHhcccchhhhhhccccCHHHHh
Confidence 25899987763 247899999999999999999999999999999999999864 78999999999999
Q ss_pred HHHHHHHHHhhhhhhhccccCcchhhhccccCCCccccccceeecC----C-CCceeeCCCCc--ccccccHHHHHHHHH
Q 000326 1472 ILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLP----G-YPDYILKPGDE--NVDINNLEEYISLVV 1544 (1661)
Q Consensus 1472 sL~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iedL~L~Ftl~----g-~~~ieL~pgG~--~VT~~N~~eYv~lv~ 1544 (1661)
+|..++.+ +| ++.||||+|++. | ...+||+|||+ .||++|+..||..++
T Consensus 857 nLtfvKhY-----------------------dg-d~~dL~LtfSvdedfmGkis~~eL~PgGkt~sVtneNKi~YIH~MA 912 (1096)
T KOG4427|consen 857 NLTFVKHY-----------------------DG-DLKDLCLTFSVDEDFMGKISTIELKPGGKTISVTNENKIQYIHAMA 912 (1096)
T ss_pred hhhHHHhh-----------------------cc-cHhhheeeeEechhhccceeEEEeccCCcceeccccchHHHHHHHH
Confidence 99999885 33 688999999987 3 26899999999 999999999999999
Q ss_pred HHHHHhcHHHHHHHHHhhcccccccccccCCCHHHHHHhhcCCCCccCHHHHhhhcEecCCCCCCChHHHHHHHHHhc-C
Q 000326 1545 DATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGE-F 1623 (1661)
Q Consensus 1545 ~~~L~~~v~~q~~afr~GF~~V~p~~~L~~Fsp~EL~~ll~G~~e~wd~e~L~~~~~~~~Gyt~~s~~i~~Fwevl~~-f 1623 (1661)
+|+++.+|..|..||.+||.+++.+.||++|+|.||+.||+|...++|++||++||+|-+||..+|++|+|||+||.. |
T Consensus 913 ~~rmnrqi~eqt~Af~rG~rsii~P~WlslFs~~elq~LiSG~nsdiDl~DLkrnt~Y~GGfh~shrvIkwlWdIl~~dF 992 (1096)
T KOG4427|consen 913 HFRMNRQIVEQTNAFYRGFRSIISPEWLSLFSPPELQRLISGDNSDIDLDDLKRNTKYYGGFHDSHRVIKWLWDILAGDF 992 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHccCcHHHHHHhcCCCCCCCHHHHHhcCEeecccCCcchhHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999888889999999999999999999999999999985 9
Q ss_pred CHHHHHHhcccccCCCCCCcCCccCCCCceEEEe
Q 000326 1624 TPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVR 1657 (1661)
Q Consensus 1624 s~eerr~FLqFvTGs~rLP~gGf~~L~P~ltIvr 1657 (1661)
++|||+.||+|||.|+|.|+-||+.|.|+|.|-+
T Consensus 993 t~eERklfLKFVTSCSrpPlLGFayLePpFsIrC 1026 (1096)
T KOG4427|consen 993 TPEERKLFLKFVTSCSRPPLLGFAYLEPPFSIRC 1026 (1096)
T ss_pred ChHHHHHHHHHHhhcCCCccccccccCCCceEEE
Confidence 9999999999999999999999999999999874
No 9
>KOG0939 consensus E3 ubiquitin-protein ligase/Putative upstream regulatory element binding protein [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=100.00 E-value=1.2e-54 Score=519.34 Aligned_cols=337 Identities=31% Similarity=0.522 Sum_probs=292.6
Q ss_pred HHHHHhcCCCchhHHhhhcCCCcccChhHHHHHHHhhhhchHHHHHHHHHhccCCCCCCCcchhhhcCccceeEEEEcCc
Q 000326 1229 DALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRN 1308 (1661)
Q Consensus 1229 ~~l~~~s~~lp~w~~~l~~~~PFlfpfe~R~~~f~~~~fg~~R~i~~l~~~~~~~~~~~~~~~~~~~grl~r~kv~V~R~ 1308 (1661)
+|-+++.| ..+...+|-+..|+.|+.||+.. ++.... . -....|.|+|+
T Consensus 323 ~~~~L~~~------f~ll~~~~~ll~F~~Kr~yf~r~----------L~~~~~-~--------------~~~~~v~v~R~ 371 (720)
T KOG0939|consen 323 NPNILAAG------FSLLLKNPMLLDFDNKRKYFKRE----------LRKEHA-S--------------SEKLAVLVRRA 371 (720)
T ss_pred Cchhhhcc------hhhheecCcceecccHHHHHHHH----------HHHhhc-c--------------CCcceEEEeHH
Confidence 44556665 45677899999999999999852 222111 0 11345899999
Q ss_pred hHHHHHHHHHhhcc--CCcceEEEEEcCCcccCc-cchHHHHHHHHHHHhccCCCCcccCCCCCCCCccccCCCCCCCCC
Q 000326 1309 RILDSAAKVMEMYS--SQKAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKT 1385 (1661)
Q Consensus 1309 ~il~~a~~~l~~~~--~~~~~LeV~F~gE~G~g~-GptrEFf~lvs~el~~~~l~lf~~~~~~~~~~~~~~~~~~~~~~~ 1385 (1661)
.+|++.++++.... .++..|+|.|.||+|.|. |++||||.++++|+++|+++||....+ +..
T Consensus 372 ~v~~~S~~~~~~~s~~e~~~rl~I~f~gEEg~D~gG~~rEw~~ll~r~ifnp~~alf~~~~~-d~t-------------- 436 (720)
T KOG0939|consen 372 LVLEDSFRALLYKSPEELKTRLEVTFQGEEGSDAGGVTREWLQLLSREIFNPRYALFTTVGS-DQT-------------- 436 (720)
T ss_pred HHHHHHHHHHHhCCHHHHhcceEEEEecccccccchHHHHHHHHHHHHHcCCCcceEEEcCC-Cce--------------
Confidence 99999999886554 567899999999999999 599999999999999999999988765 111
Q ss_pred CCCCCCccccCCCCccCCCCCCCCCccCCCchhhHHHHHHhhhhhHHhhhcCCcccccCcHHHHHHHhCCCCCcCchhhc
Q 000326 1386 SNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPF 1465 (1661)
Q Consensus 1386 ~~~~~~yv~~~~gLfP~P~~~~~~~~~~~~~~~~~~~F~~lG~llakAl~d~~~ldl~fs~~f~K~llg~~~tl~DL~~v 1465 (1661)
-+.|+|.+.- ...++.+|+|.||++||||+|+++++..|++.|||+++|.++++.|++..
T Consensus 437 ------------t~~pn~~s~~--------np~hLs~fkf~GriigKal~d~ql~~c~ftrsfyk~ilG~~v~~~d~es~ 496 (720)
T KOG0939|consen 437 ------------TFHPNPNSYV--------NPEHLSYFKFVGRIIGKALFDGQLLECYFTRSFYKHILGLPVTYHDMESA 496 (720)
T ss_pred ------------EEeeCCcccC--------ChhhhhHHHhhHHHHHHHHhcchhhhheeeHHHHhhccCCceeeeehhhc
Confidence 2335554321 14799999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHhhhhhhhccccCcchhhhccccCCCcccc-ccceeecC----C-CCceeeCCCCc--ccccccHH
Q 000326 1466 DAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIED-LCLDFTLP----G-YPDYILKPGDE--NVDINNLE 1537 (1661)
Q Consensus 1466 Dp~l~~sL~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ied-L~L~Ftl~----g-~~~ieL~pgG~--~VT~~N~~ 1537 (1661)
||++|++|.||++. ++.+ |.++|... | ...+||+|||+ .||.+|+.
T Consensus 497 DP~y~k~l~~il~n--------------------------dis~~l~ltfs~e~~~~g~~~~~eL~p~G~~i~Vt~~nK~ 550 (720)
T KOG0939|consen 497 DPEYYKSLVWILKN--------------------------DISDTLELTFSEEDDEFGVESVVELKPGGAKIYVTEANKQ 550 (720)
T ss_pred ChHHhhceeehhcC--------------------------CcccceeEEEEEeeccccccceeecccCCCceeeccccHH
Confidence 99999999999862 2332 77888765 3 36899999999 99999999
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHhhcccccccccccCCCHHHHHHhhcCCCCccCHHHHhhhcEecCCCCCCChHHHHHH
Q 000326 1538 EYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLL 1617 (1661)
Q Consensus 1538 eYv~lv~~~~L~~~v~~q~~afr~GF~~V~p~~~L~~Fsp~EL~~ll~G~~e~wd~e~L~~~~~~~~Gyt~~s~~i~~Fw 1617 (1661)
+||+++++++|..+|++|++||.+||+.++|...+.+|++.||+.|+||-+++ |+++|+.+++| +||+..+++|+|||
T Consensus 551 ~yv~lv~q~rL~~~ir~ql~afl~Gl~~iip~~li~if~E~ELELLisGlpei-dvdd~k~nt~y-~~~~~~~~~i~wFW 628 (720)
T KOG0939|consen 551 EYVQLVTQYRLTNSIRKQLDAFLAGLHEIIPKVLLSIFDEQELELLISGLPEI-DVDDLKANTEY-LGYTKASSVIQWFW 628 (720)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHcCCCcc-cHHHHHhhhhh-hcccccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999995 99999999999 79999999999999
Q ss_pred HHHhcCCHHHHHHhcccccCCCCCCcCCccCCCC-----ceEEEecC
Q 000326 1618 EIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNP-----KLTIVRKV 1659 (1661)
Q Consensus 1618 evl~~fs~eerr~FLqFvTGs~rLP~gGf~~L~P-----~ltIvrk~ 1659 (1661)
++|.+|+.+||.+|||||||++++|++||+.|.+ +|+|.+..
T Consensus 629 rav~sf~~eeraklLqFvTGtSkvP~~GF~~l~g~ng~q~fqi~~~~ 675 (720)
T KOG0939|consen 629 RAVRSFDQEERAKLLQFVTGTSKVPLGGFAALEGMNGVQKFQIHADP 675 (720)
T ss_pred HHHhhhcHHHHHhhHeeecccccCCcccccccccCCcceeEEEEeCC
Confidence 9999999999999999999999999999999999 89998753
No 10
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=7e-51 Score=449.45 Aligned_cols=387 Identities=22% Similarity=0.293 Sum_probs=346.4
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000326 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1661)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~ 91 (1661)
+.+++|.+.|.|+ |.+.|++|+..+|++|+.++.++++.++..|+||++|++|......-+|++|+|+|+||++++..+
T Consensus 71 ~elp~lt~~l~Sd-Die~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~Q 149 (526)
T COG5064 71 SELPQLTQQLFSD-DIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQ 149 (526)
T ss_pred hhhHHHHHHHhhh-HHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccc
Confidence 4789999999998 999999999999999999999999999999999999999964444668999999999999999999
Q ss_pred hhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc---hhhhcCchHHHHhhhccCC--hHHHHHHHHHHHHh
Q 000326 92 CAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYLDFFS--TGVQRVALSTAANM 166 (1661)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lLd~~~--~~vqr~Al~aLsNl 166 (1661)
+..||++||||.|+ .||.+...+++||++|||+||++|++. .|+++|++.++|.+|.... +++.|++.|+|+|+
T Consensus 150 TkvVvd~~AVPlfi-qlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNl 228 (526)
T COG5064 150 TKVVVDAGAVPLFI-QLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNL 228 (526)
T ss_pred eEEEEeCCchHHHH-HHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHh
Confidence 99999999999999 899999999999999999999999885 7999999999999998654 58999999999999
Q ss_pred ccC-CCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCC
Q 000326 167 CKK-LPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQAS 245 (1661)
Q Consensus 167 c~~-~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~ 245 (1661)
||+ +|+++...+..++|+|.+|+.+.|++|+.+||||++||+++ ..+.++.+++.|+.++|+++|.+.
T Consensus 229 cRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg---~~E~i~avld~g~~~RLvElLs~~-------- 297 (526)
T COG5064 229 CRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDG---PNEKIQAVLDVGIPGRLVELLSHE-------- 297 (526)
T ss_pred hCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccC---cHHHHHHHHhcCCcHHHHHHhcCc--------
Confidence 995 58899999999999999999999999999999999999998 999999999999999999999997
Q ss_pred CChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCC----cccccccccccCCCHHHHHHHHHHhcccCCCC
Q 000326 246 LSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSG----VSANSAVPPALSRPAEQIFEIVNLANELLPPL 321 (1661)
Q Consensus 246 ~s~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~----~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L 321 (1661)
+..++++++|.++||++|++.|++.+|++|+++.+..||.+.+ +++||+++||.+|+.+|+|+||+ ++|+|||
T Consensus 298 -sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid--~nliPpL 374 (526)
T COG5064 298 -SAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVID--ANLIPPL 374 (526)
T ss_pred -cccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHh--cccchHH
Confidence 5668999999999999999999999999999999999998876 48999999999999999999999 7777755
Q ss_pred CCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCcchhhhHHHhhccCHHHHHHHHHHHHHHHHHHHhccCChHHHH
Q 000326 322 PQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRH 401 (1661)
Q Consensus 322 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~f~~~l~p~Li~vy~ss~~~~VR~ 401 (1661)
+ +.. ++.++.+|+
T Consensus 375 i------------------------------------------------------------------~ll-s~ae~k~kK 387 (526)
T COG5064 375 I------------------------------------------------------------------HLL-SSAEYKIKK 387 (526)
T ss_pred H------------------------------------------------------------------HHH-HHHHHHHHH
Confidence 3 222 467788999
Q ss_pred HHHHHHHHHhhcCC--HHHHHHHhhhcchHHHHHHHhhcCCCchHHhHHHHHHHHH----------hhCchhhhhhHHhh
Q 000326 402 KCLSVIGKLMYFSS--AEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILM----------EKLPGTFSKMFVRE 469 (1661)
Q Consensus 402 ~~L~~i~r~v~~~~--~~~L~~~l~~~~~ss~la~il~~~d~~l~~~aL~i~~~Ll----------~K~pd~f~~~f~RE 469 (1661)
++.|||.+..+.+. |++++-++.+..| --|..+|.-.|+.++-.+|..++.++ -|.+.+|..+.++-
T Consensus 388 EACWAisNatsgg~~~PD~iryLv~qG~I-kpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~A 466 (526)
T COG5064 388 EACWAISNATSGGLNRPDIIRYLVSQGFI-KPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKA 466 (526)
T ss_pred HHHHHHHhhhccccCCchHHHHHHHccch-hHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhc
Confidence 99999999998765 4677666665333 23445566688888888899998887 35677999999999
Q ss_pred cHHHHHHHHHhcC
Q 000326 470 GVVHAVDQLILAG 482 (1661)
Q Consensus 470 GV~~~I~~L~~~~ 482 (1661)
|.++.|..+....
T Consensus 467 ggmd~I~~~Q~s~ 479 (526)
T COG5064 467 GGMDAIHGLQDSV 479 (526)
T ss_pred ccHHHHHHhhhcc
Confidence 9999999998753
No 11
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-48 Score=469.08 Aligned_cols=388 Identities=26% Similarity=0.363 Sum_probs=354.9
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000326 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1661)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~ 91 (1661)
...+.+++++.|+ |+..|+.|+..+|++++...++++..++..|+||.||++|...+++.+|++|+||||||+++++++
T Consensus 66 ~~~~~~~~~~~S~-~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~ 144 (514)
T KOG0166|consen 66 SNLELMLAALYSD-DPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQ 144 (514)
T ss_pred hhhHHHHHHHhCC-CHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhh
Confidence 3478899999997 999999999999999999999999888888999999999987778999999999999999999999
Q ss_pred hhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc---hhhhcCchHHHHhhhccC-ChHHHHHHHHHHHHhc
Q 000326 92 CAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYLDFF-STGVQRVALSTAANMC 167 (1661)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lLd~~-~~~vqr~Al~aLsNlc 167 (1661)
+..|+++||||.|+ +|+.++..+++|||+|||+||+++++. .|+++|++.+|+.++... ...+.|+++|+|+|+|
T Consensus 145 T~~vv~agavp~fi-~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlc 223 (514)
T KOG0166|consen 145 TKVVVDAGAVPIFI-QLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLC 223 (514)
T ss_pred ccccccCCchHHHH-HHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999999985 799999999999999865 4599999999999999
Q ss_pred cCC-CCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCC
Q 000326 168 KKL-PSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASL 246 (1661)
Q Consensus 168 ~~~-~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~ 246 (1661)
++. |.+.+..+..++|+|..+|++.|.+|+.+|||||+||+++ .++.++++++.|++++|+.||.+.
T Consensus 224 rgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg---~ne~iq~vi~~gvv~~LV~lL~~~--------- 291 (514)
T KOG0166|consen 224 RGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG---SNEKIQMVIDAGVVPRLVDLLGHS--------- 291 (514)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC---ChHHHHHHHHccchHHHHHHHcCC---------
Confidence 976 9999999999999999999999999999999999999997 999999999999999999999997
Q ss_pred ChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCC-----cccccccccccCCCHHHHHHHHHHhcccCCCC
Q 000326 247 STPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSG-----VSANSAVPPALSRPAEQIFEIVNLANELLPPL 321 (1661)
Q Consensus 247 s~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~-----~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L 321 (1661)
+..++++|||+++||++|++.+|+.+|++|++++|..+|+.+. ++++|+++||.+|+.+|||+|++
T Consensus 292 ~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVid--------- 362 (514)
T KOG0166|consen 292 SPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVID--------- 362 (514)
T ss_pred CcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHH---------
Confidence 4668899999999999999999999999999999999999543 37999999999999999999999
Q ss_pred CCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCcchhhhHHHhhccCHHHHHHHHHHHHHHHHHHHhccCChHHHH
Q 000326 322 PQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRH 401 (1661)
Q Consensus 322 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~f~~~l~p~Li~vy~ss~~~~VR~ 401 (1661)
..++|.|+.+++++. +.+|+
T Consensus 363 -----------------------------------------------------------a~l~p~Li~~l~~~e-f~~rK 382 (514)
T KOG0166|consen 363 -----------------------------------------------------------ANLIPVLINLLQTAE-FDIRK 382 (514)
T ss_pred -----------------------------------------------------------cccHHHHHHHHhccc-hHHHH
Confidence 156788888888665 99999
Q ss_pred HHHHHHHHHhhcCCHHHHHHHhhhcchHHHHHHHhhcCCCchHHhHHHHHHHHH---hhCc----hhhhhhHHhhcHHHH
Q 000326 402 KCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILM---EKLP----GTFSKMFVREGVVHA 474 (1661)
Q Consensus 402 ~~L~~i~r~v~~~~~~~L~~~l~~~~~ss~la~il~~~d~~l~~~aL~i~~~Ll---~K~p----d~f~~~f~REGV~~~ 474 (1661)
++.|+|.++..-.++++++-+++.. +-..+..+|.-.|..++..+|...+.|+ ++.. ..|....+..|-+++
T Consensus 383 EAawaIsN~ts~g~~~qi~yLv~~g-iI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldk 461 (514)
T KOG0166|consen 383 EAAWAISNLTSSGTPEQIKYLVEQG-IIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDK 461 (514)
T ss_pred HHHHHHHhhcccCCHHHHHHHHHcC-CchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhH
Confidence 9999999999999999999888877 4445555668889888888888888887 3443 677888899999999
Q ss_pred HHHHHhcCC
Q 000326 475 VDQLILAGN 483 (1661)
Q Consensus 475 I~~L~~~~~ 483 (1661)
|+.|..+++
T Consensus 462 iE~LQ~hen 470 (514)
T KOG0166|consen 462 IENLQSHEN 470 (514)
T ss_pred HHHhhcccc
Confidence 999998754
No 12
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' []. Proteins containing this domain at the C terminus include ubiquitin-protein ligase, which regulates ubiquitination of CDC25. Ubiquitin-protein ligase accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester, and then directly transfers the ubiquitin to targeted substrates. A cysteine residue is required for ubiquitin-thiolester formation. Human thyroid receptor interacting protein 12, which also contains this domain, is a component of an ATP-dependent multisubunit protein that interacts with the ligand binding domain of the thyroid hormone receptor. It could be an E3 ubiquitin-protein ligase. Human ubiquitin-protein ligase E3A interacts with the E6 protein of the cancer-associated Human papillomavirus type 16 and Human papillomavirus type 18. The E6/E6-AP complex binds to and targets the P53 tumour-suppressor protein for ubiquitin-mediated proteolysis.; GO: 0016881 acid-amino acid ligase activity, 0006464 protein modification process, 0005622 intracellular; PDB: 3TUG_A 1ZVD_A 1C4Z_C 1D5F_B 1ND7_A 2XBB_A 2XBF_A 3PT3_A 3G1N_B 3H1D_A ....
Probab=100.00 E-value=5.3e-46 Score=444.87 Aligned_cols=262 Identities=37% Similarity=0.654 Sum_probs=215.6
Q ss_pred HHHHHHHhccCCCCcccCCCCCCCCccccCCCCCCCCCCCCCCCccccCCCCccCCCCC-CCCCccCCCchhhHHHHHHh
Q 000326 1348 TLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPP-SADASEGGQFSKVIEYFRLL 1426 (1661)
Q Consensus 1348 ~lvs~el~~~~l~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yv~~~~gLfP~P~~~-~~~~~~~~~~~~~~~~F~~l 1426 (1661)
++|++|+++|+++||..+++ ..+ ++|+|... ...... .....+++|+++
T Consensus 1 ~l~~~el~~~~~~lF~~~~~----------------------~~~------~~~~~~~~~~~~~~~--~~~~~~~~~~~l 50 (317)
T PF00632_consen 1 TLLCKELFDPNLGLFYQTSN----------------------NGL------FWPNPNSNRDSPSPA--SSEEHLKMFRFL 50 (317)
T ss_dssp HHHHHHHTSGGGSSEESSTT----------------------TCE------EEEECCH----TTGG--GSTTHHHHHHHH
T ss_pred CHHHHHhcCccCCCceEcCC----------------------CCE------EeCCCcccccccccc--cCHHHHHHHHHH
Confidence 58999999999999966554 111 22333210 000000 013678999999
Q ss_pred hhhhHHhhhcCCcccccCcHHHHHHHh-CCCCCcCchhhccHHHHHHHHHHHHHHhhhhhhhccccCcchhhhccccCCC
Q 000326 1427 GRVMAKALQDGRLLDLPFSTAFYKLVL-GHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGA 1505 (1661)
Q Consensus 1427 G~llakAl~d~~~ldl~fs~~f~K~ll-g~~~tl~DL~~vDp~l~~sL~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 1505 (1661)
|+|||+||+++.+++++|+++|||+|+ |.+++++||..+||+++++|++|+++.. +..
T Consensus 51 G~lig~ai~~~~~l~~~f~~~~~k~l~~g~~~t~~Dl~~iD~~~~~sl~~l~~~~~---------------------~~~ 109 (317)
T PF00632_consen 51 GRLIGKAIRNGIPLPLPFSPAFWKYLLSGEPLTLEDLEEIDPELYKSLKKLLDMDN---------------------DEE 109 (317)
T ss_dssp HHHHHHHHHTTS-ESSEB-HHHHHHHT-T----HHHHHCCSHHHHHHHHHHHHSHS---------------------GSC
T ss_pred HHHHHHHHHcCCccccCcCHHHHHHHhcCCCCccccchhcCchhhcchhhheeccc---------------------ccc
Confidence 999999999999999999999999999 9999999999999999999999987410 223
Q ss_pred ccccccceeecCCC------CceeeCCCCc--ccccccHHHHHHHHHHHHHHhcHHHHHHHHHhhcccccccccccCCCH
Q 000326 1506 PIEDLCLDFTLPGY------PDYILKPGDE--NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTP 1577 (1661)
Q Consensus 1506 ~iedL~L~Ftl~g~------~~ieL~pgG~--~VT~~N~~eYv~lv~~~~L~~~v~~q~~afr~GF~~V~p~~~L~~Fsp 1577 (1661)
.+++++|+|+++.. .++||++||. .||.+|+++||+++++|++.++++.|++|||+||.+|+|...|++|+|
T Consensus 110 ~~~~l~l~F~~~~~~~~~~~~~~eL~~~G~~~~Vt~~N~~eyv~~~~~~~l~~~~~~~~~~~r~Gf~~vi~~~~l~~f~~ 189 (317)
T PF00632_consen 110 DVEDLDLTFSVPSSSGGGQVEEVELIPGGSNIPVTNENKEEYVRLLAQYRLNESVKKQLEAFRKGFYSVIPLELLSLFSP 189 (317)
T ss_dssp TTSGCTEBSEEEEEECTTEEEEEESSTTGGGSB-TTTTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHSSHHHHTTSSH
T ss_pred ceeecceEEEEecccccCceeEeeecCCCcccccchhhhhHHHHhhhhhhcccccchhHHHHhcchhhcchhHHHHcCCH
Confidence 47889999998732 3689999998 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCccCHHHHhhhcEecCCCCCCChHHHHHHHHHhcCCHHHHHHhcccccCCCCCCcCCccCCCCceEEEe
Q 000326 1578 HELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVR 1657 (1661)
Q Consensus 1578 ~EL~~ll~G~~e~wd~e~L~~~~~~~~Gyt~~s~~i~~Fwevl~~fs~eerr~FLqFvTGs~rLP~gGf~~L~P~ltIvr 1657 (1661)
+||+.++||.++.||+++|+++++|++||+.+++.|+|||+||++|+++||++||+|+||++|+|+|||+.|+|+|+|++
T Consensus 190 ~eL~~l~~G~~~~i~~~~l~~~~~~~~g~~~~~~~i~~fw~vl~~~s~~~~~~fL~F~TG~~~lP~~G~~~l~~~i~i~~ 269 (317)
T PF00632_consen 190 EELERLLCGSPEPIDVEDLKSNTRYEGGYTESSPVIQWFWEVLEEFSQEERRKFLRFVTGSSRLPPGGFSNLNPKITIQF 269 (317)
T ss_dssp HHHHHHHHCBSS---HHHHHHTEEEESSS-TTSHHHHHHHHHHHHS-HHHHHHHHHHHHSSSSB-TTGGGGGE-EEEEEE
T ss_pred HHHHHHhcCccccCCHHHHHhcccchhccccccceeeEEeeeeccCCHHHhheeEEEecCCCCCCccccccccceeEEee
Confidence 99999999988767999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 000326 1658 KVA 1660 (1661)
Q Consensus 1658 k~~ 1660 (1661)
++.
T Consensus 270 ~~~ 272 (317)
T PF00632_consen 270 SDD 272 (317)
T ss_dssp ESC
T ss_pred cCC
Confidence 875
No 13
>KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=8.3e-33 Score=325.41 Aligned_cols=292 Identities=26% Similarity=0.403 Sum_probs=256.8
Q ss_pred ceeEEEEcCchHHHHHHHHHhhcc--CCcceEEEEEcCCcccCc-cchHHHHHHHHHHHhccCCCCcccCCCCCCCCccc
Q 000326 1299 ERQKVRVSRNRILDSAAKVMEMYS--SQKAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEI 1375 (1661)
Q Consensus 1299 ~r~kv~V~R~~il~~a~~~l~~~~--~~~~~LeV~F~gE~G~g~-GptrEFf~lvs~el~~~~l~lf~~~~~~~~~~~~~ 1375 (1661)
+..+++|+|+++||++++++.... +.++.+-+.|.||+|.+. |+.||||.++|+|.+.|.+++|.+..+ + ++.++
T Consensus 15 ~~~~~~~~~~~~~e~~f~~iM~~~~~~~~~~l~~~~~~ee~ldy~glprewf~~lS~e~~~p~~~~~~~~~~-~-~tlq~ 92 (358)
T KOG0940|consen 15 QQSHHKVDRDHLLEDSFNQIMNPKPSDLQKRLMREFKGEEGLDYGGLPREWFFLLSHEGFNPWYGLFQHSRK-D-YTLWL 92 (358)
T ss_pred ceeEEEechhhhHHHHHHHHhCCCchhhhhcceeecccccccccCCCCcceeeeeccccCCcceeeeeeccc-c-ccccc
Confidence 467899999999999987665443 468899999999999887 789999999999999999999988765 1 23322
Q ss_pred cCCCCCCCCCCCCCCCccccCCCCccCCCCCCCCCccCCCchhhHHHHHHhhhhhHHhhhcCCcccccCcHHHHHHHhCC
Q 000326 1376 DGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGH 1455 (1661)
Q Consensus 1376 ~~~~~~~~~~~~~~~~yv~~~~gLfP~P~~~~~~~~~~~~~~~~~~~F~~lG~llakAl~d~~~ldl~fs~~f~K~llg~ 1455 (1661)
+|.... ...++.+|+|+|+++|+|+++.+.++-- -..|||.|+++
T Consensus 93 --------------------------~P~sg~--------~p~~l~~~~~vg~~~~l~~~h~~~~~~g-~r~F~~~i~~k 137 (358)
T KOG0940|consen 93 --------------------------NPRSGV--------NPGHLTYFRFVGGVLALAGWHMRFTDTG-QRPFYKHILKK 137 (358)
T ss_pred --------------------------CCccCC--------CCCcccccccccccccccceeeEecCCC-ceehhhhhhcC
Confidence 232220 1358899999999999999999999987 99999999999
Q ss_pred CCCcCchhhccHHHHHHHHHHHHHHhhhhhhhccccCcchhhhccccCCCccccccceeecC----C-CCceeeCCCCc-
Q 000326 1456 ELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLP----G-YPDYILKPGDE- 1529 (1661)
Q Consensus 1456 ~~tl~DL~~vDp~l~~sL~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iedL~L~Ftl~----g-~~~ieL~pgG~- 1529 (1661)
+++++|.+.+|+++|+++.+++.. ++.. ||+|.++ | ....+|+|+|.
T Consensus 138 tt~ldd~e~~d~e~~~s~~~~~en--------------------------~~~~-~~~f~~~~~~~g~~~~~~l~p~g~~ 190 (358)
T KOG0940|consen 138 TTTLDDREAVDPEFYNSLTWIREN--------------------------DPTN-DLTFSVESEVLGQITTQELKPNGAN 190 (358)
T ss_pred ccccCchhhcCccccccccccccC--------------------------Cccc-chhhhcchhhcCCccceeecCCCcc
Confidence 999999999999999999988752 1222 7888876 2 36789999999
Q ss_pred -ccccccHHHHHHHHHHHHHHhcHHHHHHHHHhhcccccccccccCCCHHHHHHhhcCCCCccCHHHHhhhcEecCCCCC
Q 000326 1530 -NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTA 1608 (1661)
Q Consensus 1530 -~VT~~N~~eYv~lv~~~~L~~~v~~q~~afr~GF~~V~p~~~L~~Fsp~EL~~ll~G~~e~wd~e~L~~~~~~~~Gyt~ 1608 (1661)
.||.+|+++||.++.+ ++..++..|..+|.+||..+.|...+++|.+.|++.++||..+. ++++|+.++.|. ||..
T Consensus 191 ~~v~~~n~~~yi~~l~~-r~~~~~~~q~~~l~~~~~~~~p~~~~~~~~e~~~e~~~~~~~~~-~~~d~~~~t~~~-~~~~ 267 (358)
T KOG0940|consen 191 IQVTEENKKEYIMLLQN-RFERGIQEQLKALLQGFNELLPQSLLRIFDEMELELALSGDPEI-DVNDWKQNTEYR-GYSE 267 (358)
T ss_pred cccccccHHHHHHHHHH-HHHHHHHHHHHHHhccccccCCcccccccchhhHHHHhcCCccc-chhHHhhhcccc-cccC
Confidence 9999999999999999 99999999999999999999999999999999999999999985 999999999997 8999
Q ss_pred CChHHHHHHHHHhcCCHHHHHHhcccccCCCCCCcCCccCCCC-----ceEEEe
Q 000326 1609 KSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNP-----KLTIVR 1657 (1661)
Q Consensus 1609 ~s~~i~~Fwevl~~fs~eerr~FLqFvTGs~rLP~gGf~~L~P-----~ltIvr 1657 (1661)
++++|.|||+.+.+|++++|.+.|+|+||++++|.+||+.|+- +|+|-+
T Consensus 268 ~~~~i~wf~~~v~~~~~~~r~r~l~~~tg~~~vp~~~~~~l~~s~~~~~~~ie~ 321 (358)
T KOG0940|consen 268 TDRQIDWFWNNVDEMDNEERIRLLQFVTGTSRVPVEGFAILSGSNGPRKFCIEK 321 (358)
T ss_pred CccccHHHHHhhhhcChHHHHhhhhccCCCccccccchhhccCCCccCceeecC
Confidence 9999999999999999999999999999999999999999974 677655
No 14
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.4e-29 Score=301.58 Aligned_cols=206 Identities=23% Similarity=0.366 Sum_probs=176.4
Q ss_pred hhhHHHHHHhhhhhHHhhhcCCcccccCcHHHHHHHhCCCCCcCchhhccHHHHHHHHHHHHHHhhhhhhhccccCcchh
Q 000326 1417 SKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEE 1496 (1661)
Q Consensus 1417 ~~~~~~F~~lG~llakAl~d~~~ldl~fs~~f~K~llg~~~tl~DL~~vDp~l~~sL~~L~~~~~~~~~~~~~~~~~~~~ 1496 (1661)
...+..|+-+||+||.||..|-+.++.|++.+||++||.++.|.|+..+||.+|.+|+.|... .+....
T Consensus 2739 ~~RLaafRniGRIlGiCL~Qgdi~PirfnRHifk~iL~l~icW~Df~FfDPVlfenLRaLfkA---------hpsSd~-- 2807 (3015)
T KOG0943|consen 2739 EARLAAFRNIGRILGICLLQGDICPIRFNRHIFKVILGLKICWHDFAFFDPVLFENLRALFKA---------HPSSDA-- 2807 (3015)
T ss_pred HHHHHHHHhhhhHhhhhhhcCcccceeehhHHHHHHhcCceehhhhccccHHHHHHHHHHHhc---------CCcccc--
Confidence 467899999999999999999999999999999999999999999999999999999998763 010000
Q ss_pred hhccccCCCccccccceeec-----CCCCceeeCCCCc--ccccccHHHHHHHHHHHHHHhcHHHHHHHHHhhccccccc
Q 000326 1497 VVDLRFRGAPIEDLCLDFTL-----PGYPDYILKPGDE--NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDI 1569 (1661)
Q Consensus 1497 ~~~l~~~~~~iedL~L~Ftl-----~g~~~ieL~pgG~--~VT~~N~~eYv~lv~~~~L~~~v~~q~~afr~GF~~V~p~ 1569 (1661)
+..+.-+.+.|.. .|...++|+|||. +||.+|+.|||.+|++++|...-...++|+|+|+..|+|.
T Consensus 2808 -------DadFS~md~aa~gdlckee~a~qVeL~PNGdeilVnkdNViEYV~KYAE~~llgk~~i~feAiReGiLDViPe 2880 (3015)
T KOG0943|consen 2808 -------DADFSAMDLAAAGDLCKEEGAGQVELIPNGDEILVNKDNVIEYVRKYAEHRLLGKAEIPFEAIREGILDVIPE 2880 (3015)
T ss_pred -------cchhhHHHHhhccchhhhcCceeEEEecCCceeeecchhHHHHHHHHHHhhhheeeeccHHHHHHhHHhhcch
Confidence 0112222222322 2556899999999 9999999999999999999887778899999999999999
Q ss_pred ccccCCCHHHHHHhhcCCCCccCHHHHhhhcEecCCCCCCC--------hHHHHHHHHHhcCCHHHHHHhcccccCCCCC
Q 000326 1570 TSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKS--------PAIVNLLEIMGEFTPDQQRAFCQFVTGAPRL 1641 (1661)
Q Consensus 1570 ~~L~~Fsp~EL~~ll~G~~e~wd~e~L~~~~~~~~Gyt~~s--------~~i~~Fwevl~~fs~eerr~FLqFvTGs~rL 1641 (1661)
..|.-++++++.++|||.++. +++.|.++|-| ..+| +.-+|||.|++.|+..||..++-||||||.|
T Consensus 2881 nmL~~LT~EDfRLiicG~eeV-niqmL~e~TgF----lDES~anaEkL~qFKqWFWqiiEkfs~qEkQdLVfFWTgSPaL 2955 (3015)
T KOG0943|consen 2881 NMLEDLTAEDFRLIICGCEEV-NIQMLIEFTGF----LDESGANAEKLLQFKQWFWQIIEKFSMQEKQDLVFFWTGSPAL 2955 (3015)
T ss_pred hhhcccCHhHheeeeecccce-ehhHhhhhccc----cccccccHHHHHHHHHHHHHHHHHHhhhhhccEEEEecCCCCC
Confidence 999999999999999999985 99999998855 4444 3567999999999999999999999999999
Q ss_pred CcCC
Q 000326 1642 PPGG 1645 (1661)
Q Consensus 1642 P~gG 1645 (1661)
|..|
T Consensus 2956 PAa~ 2959 (3015)
T KOG0943|consen 2956 PAAE 2959 (3015)
T ss_pred Cccc
Confidence 9975
No 15
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4e-28 Score=292.40 Aligned_cols=298 Identities=21% Similarity=0.217 Sum_probs=267.4
Q ss_pred cchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 000326 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPS 90 (1661)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~ 90 (1661)
++.++.+|+.|..++++.+|++|+|+|.++.+...+.+ ..++..|.||.|+.+|.+++ .+++..|.|||+||+..+|.
T Consensus 108 ~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T-~~vv~agavp~fi~Ll~s~~-~~v~eQavWALgNIagds~~ 185 (514)
T KOG0166|consen 108 SGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQT-KVVVDAGAVPIFIQLLSSPS-ADVREQAVWALGNIAGDSPD 185 (514)
T ss_pred cCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhc-cccccCCchHHHHHHhcCCc-HHHHHHHHHHHhccccCChH
Confidence 47899999999876689999999999999999887766 57889999999999999884 99999999999999999999
Q ss_pred chhhhcccccHHHHHHHHhcCCc-HHHHHHHHHHHHHhhccC-cc--hhhhcCchHHHHhhhccCChHHHHHHHHHHHHh
Q 000326 91 SCAAVVHYGAVTCFVARLLTIEY-MDLAEQSLQALKKISQEH-PT--ACLRAGALMAVLSYLDFFSTGVQRVALSTAANM 166 (1661)
Q Consensus 91 ~~~~vV~~GaVp~Lv~kLL~~~~-~dl~Eqal~aL~nIS~~~-~~--~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNl 166 (1661)
++..|+++|++++|+ .++...+ .-+..+++|+|.|+|+.. |. .-.-...++.|+.+|...+..++..|+|+++++
T Consensus 186 ~Rd~vl~~g~l~pLl-~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyL 264 (514)
T KOG0166|consen 186 CRDYVLSCGALDPLL-RLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYL 264 (514)
T ss_pred HHHHHHhhcchHHHH-HHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 999999999999999 6666555 578899999999999875 33 344567899999999999999999999999999
Q ss_pred ccCC-CCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCC
Q 000326 167 CKKL-PSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQAS 245 (1661)
Q Consensus 167 c~~~-~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~ 245 (1661)
..+. +..+.....+++|.|+.+|.+.+..++.-|+.++.||+.| ++++.+.+++.|+++.|..||....
T Consensus 265 sdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG---~d~QTq~vi~~~~L~~l~~ll~~s~------- 334 (514)
T KOG0166|consen 265 TDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTG---SDEQTQVVINSGALPVLSNLLSSSP------- 334 (514)
T ss_pred hcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeec---cHHHHHHHHhcChHHHHHHHhccCc-------
Confidence 9854 4555556679999999999999999999999999999998 9999999999999999999998542
Q ss_pred CChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCC----cccccccccc-cCCCHHHHHHHHHHhcccCCC
Q 000326 246 LSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSG----VSANSAVPPA-LSRPAEQIFEIVNLANELLPP 320 (1661)
Q Consensus 246 ~s~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~----~~~~~~~s~i-~~~~~~qi~~vi~li~~LLP~ 320 (1661)
...+...|+|+|+||++|+.++++.+++.|+++.|..+|.... ++++|+++|+ ..|+++|+..+++ .+++++
T Consensus 335 -~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~--~giI~p 411 (514)
T KOG0166|consen 335 -KESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVE--QGIIKP 411 (514)
T ss_pred -chhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHH--cCCchh
Confidence 3558899999999999999999999999999999999998775 4899999997 5679999999999 999999
Q ss_pred CCCC
Q 000326 321 LPQG 324 (1661)
Q Consensus 321 L~~~ 324 (1661)
+++-
T Consensus 412 lcdl 415 (514)
T KOG0166|consen 412 LCDL 415 (514)
T ss_pred hhhc
Confidence 9983
No 16
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.94 E-value=1.9e-26 Score=256.31 Aligned_cols=295 Identities=17% Similarity=0.151 Sum_probs=257.1
Q ss_pred cchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 000326 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPS 90 (1661)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~ 90 (1661)
.+-++++++.+........|++|.|+|.++.+..++++ ..++..|.||.++++|.+. +.++..+|.|||+||+..++.
T Consensus 113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QT-kvVvd~~AVPlfiqlL~s~-~~~V~eQavWALGNiAGDS~~ 190 (526)
T COG5064 113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQT-KVVVDAGAVPLFIQLLSST-EDDVREQAVWALGNIAGDSEG 190 (526)
T ss_pred ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccce-EEEEeCCchHHHHHHHcCc-hHHHHHHHHHHhccccCCchh
Confidence 45678889988554466889999999999999888776 5788999999999999976 589999999999999999999
Q ss_pred chhhhcccccHHHHHHHHhcCCc--HHHHHHHHHHHHHhhccCc---c-hhhhcCchHHHHhhhccCChHHHHHHHHHHH
Q 000326 91 SCAAVVHYGAVTCFVARLLTIEY--MDLAEQSLQALKKISQEHP---T-ACLRAGALMAVLSYLDFFSTGVQRVALSTAA 164 (1661)
Q Consensus 91 ~~~~vV~~GaVp~Lv~kLL~~~~--~dl~Eqal~aL~nIS~~~~---~-~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLs 164 (1661)
+++.|+++|++.+|+ .|+.+.. +.+...+.|+|.|+|+... + ..+ .-+++.|-.++...++.+...|+|+++
T Consensus 191 ~RD~vL~~galeplL-~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i-sqalpiL~KLiys~D~evlvDA~WAiS 268 (526)
T COG5064 191 CRDYVLQCGALEPLL-GLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI-SQALPILAKLIYSRDPEVLVDACWAIS 268 (526)
T ss_pred HHHHHHhcCchHHHH-HHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH-HHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 999999999999999 5555544 5889999999999998632 2 222 336888889999999999999999999
Q ss_pred HhccCC-CCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCC
Q 000326 165 NMCKKL-PSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQ 243 (1661)
Q Consensus 165 Nlc~~~-~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~ 243 (1661)
.+..+. +......-.++.+.|+.+|.|++.+|+.-|+..+.||+.| ++.+.+.+++.|+++.+..||++.
T Consensus 269 YlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG---~D~QTqviI~~G~L~a~~~lLs~~------ 339 (526)
T COG5064 269 YLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTG---SDDQTQVIINCGALKAFRSLLSSP------ 339 (526)
T ss_pred HhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeec---CccceehheecccHHHHHHHhcCh------
Confidence 999864 3444445568899999999999999999999999999998 999999999999999999999887
Q ss_pred CCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCC----cccccccccccCC---CHHHHHHHHHHhcc
Q 000326 244 ASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSG----VSANSAVPPALSR---PAEQIFEIVNLANE 316 (1661)
Q Consensus 244 ~~~s~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~----~~~~~~~s~i~~~---~~~qi~~vi~li~~ 316 (1661)
...+...++|.|+||.+|+.++++.+++++++|.|..+|.... +++||+++|.+.| -+++|..+++ .+
T Consensus 340 ---ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~--qG 414 (526)
T COG5064 340 ---KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVS--QG 414 (526)
T ss_pred ---hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHH--cc
Confidence 4579999999999999999999999999999999999998764 5999999997554 5688999999 89
Q ss_pred cCCCCCC
Q 000326 317 LLPPLPQ 323 (1661)
Q Consensus 317 LLP~L~~ 323 (1661)
.+-||++
T Consensus 415 ~IkpLc~ 421 (526)
T COG5064 415 FIKPLCD 421 (526)
T ss_pred chhHHHH
Confidence 9998887
No 17
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.93 E-value=2e-24 Score=293.00 Aligned_cols=378 Identities=17% Similarity=0.145 Sum_probs=296.4
Q ss_pred cchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 000326 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPS 90 (1661)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~ 90 (1661)
.+.++.|+..|.++ |+..|.+|++.|..+.... ++....+...|+||.||++|+++.++.+|.+|+|||+||+.++++
T Consensus 188 aGaVp~LV~LLsS~-d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e 265 (2102)
T PLN03200 188 AGGVDILVKLLSSG-NSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKE 265 (2102)
T ss_pred cCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHH
Confidence 56789999999886 9999999999998776654 334567789999999999998766689999999999999999999
Q ss_pred chhhhcccccHHHHHHHHhcCCc---------HHHHHHHHHHHHHhhccCcc-----------------hhhhcCchHHH
Q 000326 91 SCAAVVHYGAVTCFVARLLTIEY---------MDLAEQSLQALKKISQEHPT-----------------ACLRAGALMAV 144 (1661)
Q Consensus 91 ~~~~vV~~GaVp~Lv~kLL~~~~---------~dl~Eqal~aL~nIS~~~~~-----------------~Il~~GgL~~L 144 (1661)
++..|++.|+||.|+ .++..+. ..++|+|+|||+|||++... .....|+|..+
T Consensus 266 ~r~~Iv~aGgIp~LI-~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayl 344 (2102)
T PLN03200 266 AKQAIADAGGIPALI-NATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYA 344 (2102)
T ss_pred HHHHHHHCCCHHHHH-HHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHH
Confidence 999999999999999 7776544 45799999999999996332 12345889999
Q ss_pred HhhhccCChHHH----HHHHHHHHHhccCC-CCchhHHH-------------------hCcHHHHHHhhccCCHHHHHHH
Q 000326 145 LSYLDFFSTGVQ----RVALSTAANMCKKL-PSDAADFV-------------------MEAVPLLTNLLQYHDAKVLEHA 200 (1661)
Q Consensus 145 L~lLd~~~~~vq----r~Al~aLsNlc~~~-~~~~~~~v-------------------~~~lp~L~~lL~~~D~~v~e~A 200 (1661)
+.+++......+ ++++|+|.|+|++. +...+..+ .++++.|+.+|...+.++++++
T Consensus 345 l~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~A 424 (2102)
T PLN03200 345 LMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEEL 424 (2102)
T ss_pred HHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHH
Confidence 999886555444 36789999999965 33322222 3566788888888999999999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHH
Q 000326 201 SVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGI 280 (1661)
Q Consensus 201 ~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~ 280 (1661)
||+|.+|+++ +.+..+.+++.|.++.|+++|.+. +..++..++++|++|+.+++++++.++++|+++.
T Consensus 425 v~aL~~L~~~---~~e~~~aIi~~ggIp~LV~LL~s~---------s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~ 492 (2102)
T PLN03200 425 IRALSSLCCG---KGGLWEALGGREGVQLLISLLGLS---------SEQQQEYAVALLAILTDEVDESKWAITAAGGIPP 492 (2102)
T ss_pred HHHHHHHhCC---CHHHHHHHHHcCcHHHHHHHHcCC---------CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHH
Confidence 9999999996 899999999999999999999986 5789999999999999999999999999999999
Q ss_pred HHHhhcCCCc----ccccccccccCCCHHHHHHHHHHhcccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCC
Q 000326 281 LKDILSGSGV----SANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTN 356 (1661)
Q Consensus 281 L~~LL~~~~~----~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 356 (1661)
|.+||.+.+. .+.|++.|+.. ..+|++.++. .
T Consensus 493 LV~LL~s~~~~iqeeAawAL~NLa~-~~~qir~iV~--~----------------------------------------- 528 (2102)
T PLN03200 493 LVQLLETGSQKAKEDSATVLWNLCC-HSEDIRACVE--S----------------------------------------- 528 (2102)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhC-CcHHHHHHHH--H-----------------------------------------
Confidence 9999986553 56777766543 3445555553 0
Q ss_pred CCcchhhhHHHhhccCHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHhhcCCHHHHHHHhhhcchHHHHHHHh
Q 000326 357 GNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVL 436 (1661)
Q Consensus 357 ~~~~~~~~r~~~~~~~~e~~~~f~~~l~p~Li~vy~ss~~~~VR~~~L~~i~r~v~~~~~~~L~~~l~~~~~ss~la~il 436 (1661)
...+|.|+++..+. ++.++..++++|.++++..+.+.+.. +..+|
T Consensus 529 ------------------------aGAIppLV~LL~sg-d~~~q~~Aa~AL~nLi~~~d~~~I~~----------Lv~LL 573 (2102)
T PLN03200 529 ------------------------AGAVPALLWLLKNG-GPKGQEIAAKTLTKLVRTADAATISQ----------LTALL 573 (2102)
T ss_pred ------------------------CCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhccchhHHHH----------HHHHh
Confidence 14466677776544 78899999999999999988887742 33457
Q ss_pred hcCCCchHHhHHHHHHHHHhhCchh--hhhhHHhhcHHHHHHHHHhcC
Q 000326 437 AWKDPHVLIPSLQIAEILMEKLPGT--FSKMFVREGVVHAVDQLILAG 482 (1661)
Q Consensus 437 ~~~d~~l~~~aL~i~~~Ll~K~pd~--f~~~f~REGV~~~I~~L~~~~ 482 (1661)
.+.++.+...+|..+..++.-.... ...--...|.+..+..|..++
T Consensus 574 lsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg 621 (2102)
T PLN03200 574 LGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS 621 (2102)
T ss_pred cCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC
Confidence 7788888888887776665432221 111122357778888887754
No 18
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.92 E-value=2.9e-23 Score=281.76 Aligned_cols=395 Identities=15% Similarity=0.107 Sum_probs=314.0
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch
Q 000326 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC 92 (1661)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~ 92 (1661)
.++.||..|... +.+.|..++++|+.+... +++.++.+...|++|.|+++|.++ +.++|..|+|+|.||+.++++++
T Consensus 405 aik~LV~LL~~~-~~evQ~~Av~aL~~L~~~-~~e~~~aIi~~ggIp~LV~LL~s~-s~~iQ~~A~~~L~nLa~~ndenr 481 (2102)
T PLN03200 405 AKKVLVGLITMA-TADVQEELIRALSSLCCG-KGGLWEALGGREGVQLLISLLGLS-SEQQQEYAVALLAILTDEVDESK 481 (2102)
T ss_pred chhhhhhhhccC-CHHHHHHHHHHHHHHhCC-CHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHH
Confidence 355667777776 789999999999776655 455567889999999999999987 58999999999999999999999
Q ss_pred hhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc--h-hhhcCchHHHHhhhccCChHHHHHHHHHHHHhccC
Q 000326 93 AAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT--A-CLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKK 169 (1661)
Q Consensus 93 ~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~--~-Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~ 169 (1661)
..|+++|+||.|+ +||.+++.+++++|+|+|+|||.+..+ . |.++|+|++++.+|+..+..+|+.|+|+|+|++.+
T Consensus 482 ~aIieaGaIP~LV-~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~ 560 (2102)
T PLN03200 482 WAITAAGGIPPLV-QLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRT 560 (2102)
T ss_pred HHHHHCCCHHHHH-HHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999 999999999999999999999986554 3 55789999999999999999999999999999875
Q ss_pred CCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChh
Q 000326 170 LPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTP 249 (1661)
Q Consensus 170 ~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~ 249 (1661)
.... .++.|+.+|.++|++++..++.+|.+|...........+.....|.++.|++||.++ +..
T Consensus 561 ~d~~-------~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg---------s~~ 624 (2102)
T PLN03200 561 ADAA-------TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS---------KEE 624 (2102)
T ss_pred cchh-------HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC---------CHH
Confidence 4322 458899999999999999999999998764211222334445679999999999987 678
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCc----ccccccccccC-CCHHHHHHHHHHhcccCCCCCCC
Q 000326 250 TYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGV----SANSAVPPALS-RPAEQIFEIVNLANELLPPLPQG 324 (1661)
Q Consensus 250 i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~----~~~~~~s~i~~-~~~~qi~~vi~li~~LLP~L~~~ 324 (1661)
++..++++|.++|+++.++.+.++..|+++.|..+|.+... .++|++.++.. ++.+|+..++. .+.+|+|++=
T Consensus 625 ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~--~GaV~pL~~L 702 (2102)
T PLN03200 625 TQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAA--EDAIKPLIKL 702 (2102)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHH--cCCHHHHHHH
Confidence 99999999999999999999999999999999999987653 77888777653 57788888888 9999999872
Q ss_pred CCCCCccccccccCCcccCCCCCCCCCCCCCCCCcchhhhHHHhhccCHHHHHHHH-HHHHHHHHHHHhccCChHHHHHH
Q 000326 325 TISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFG-MDLLPVLIQIYGSSVNSPVRHKC 403 (1661)
Q Consensus 325 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~f~-~~l~p~Li~vy~ss~~~~VR~~~ 403 (1661)
.-+ + ..+ -....-.=...+..+++....+. ...+|.|+++..+. ++.+|+.+
T Consensus 703 L~~-~---------------------d~~----v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G-~~~~k~~A 755 (2102)
T PLN03200 703 AKS-S---------------------SIE----VAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREG-TLEGKRNA 755 (2102)
T ss_pred HhC-C---------------------ChH----HHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhC-ChHHHHHH
Confidence 110 0 000 00011122234455666666666 47899999988754 57799999
Q ss_pred HHHHHHHhhcCCHHH-HHHHhhhcchHHHHHHHhhcCCCchHHh--HHHHHHHHHh
Q 000326 404 LSVIGKLMYFSSAEM-IQSLLSVTNISSFLAGVLAWKDPHVLIP--SLQIAEILME 456 (1661)
Q Consensus 404 L~~i~r~v~~~~~~~-L~~~l~~~~~ss~la~il~~~d~~l~~~--aL~i~~~Ll~ 456 (1661)
.++|+.++...+.+. +.+.+....+-.-|..+|...|...+.. ||.....|.+
T Consensus 756 a~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~ 811 (2102)
T PLN03200 756 ARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLAR 811 (2102)
T ss_pred HHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHh
Confidence 999999998888766 7666555555556667777777655554 8888877775
No 19
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=1.5e-15 Score=171.46 Aligned_cols=291 Identities=16% Similarity=0.185 Sum_probs=242.4
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch
Q 000326 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC 92 (1661)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~ 92 (1661)
.+..|+.....+ .-..|..++.++..+.....+. ..+...|.+.+|.++-++++ ..+|..|..+|.||.. ..+++
T Consensus 127 Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~d~nk--~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmTh-s~EnR 201 (550)
T KOG4224|consen 127 GLDLLILQMMTD-GVEVQCNAVGCITNLATFDSNK--VKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTH-SRENR 201 (550)
T ss_pred ChHHHHHHhcCC-CcEEEeeehhhhhhhhccccch--hhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhh-hhhhh
Confidence 466778888776 7789999999998888774432 35778888999999666664 8899999999999986 45788
Q ss_pred hhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc--hhhhcC--chHHHHhhhccCChHHHHHHHHHHHHhcc
Q 000326 93 AAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT--ACLRAG--ALMAVLSYLDFFSTGVQRVALSTAANMCK 168 (1661)
Q Consensus 93 ~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~--~Il~~G--gL~~LL~lLd~~~~~vqr~Al~aLsNlc~ 168 (1661)
..+|.+|++|.|+ .|+.+.+.++++.|..+++||+.+... .+.+.+ .+++|+++++..+..++-.|..++.|++.
T Consensus 202 r~LV~aG~lpvLV-sll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlas 280 (550)
T KOG4224|consen 202 RVLVHAGGLPVLV-SLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLAS 280 (550)
T ss_pred hhhhccCCchhhh-hhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcc
Confidence 9999999999999 999999999999999999999987553 566777 89999999999999999999999999999
Q ss_pred CCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCCh
Q 000326 169 KLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLST 248 (1661)
Q Consensus 169 ~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~ 248 (1661)
...+.....-.+.+|.|+.+|+++--..+-....|+.||+- +|-+--.++++|.+..||+||..++ +.
T Consensus 281 dt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisi----hplNe~lI~dagfl~pLVrlL~~~d--------nE 348 (550)
T KOG4224|consen 281 DTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISI----HPLNEVLIADAGFLRPLVRLLRAGD--------NE 348 (550)
T ss_pred cchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccc----ccCcccceecccchhHHHHHHhcCC--------ch
Confidence 87777666678999999999998877777778889999988 6777778889999999999999886 77
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcccccccc---cccCCCHHHHHHHHHHhcccCCCCCC
Q 000326 249 PTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVP---PALSRPAEQIFEIVNLANELLPPLPQ 323 (1661)
Q Consensus 249 ~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s---~i~~~~~~qi~~vi~li~~LLP~L~~ 323 (1661)
+++..+..+|.|++..+......+++.|.++.+..|+...+.+....++ ..++-+.+--.++++ .+++|.|+.
T Consensus 349 eiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld--~gi~~iLIp 424 (550)
T KOG4224|consen 349 EIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLD--SGIIPILIP 424 (550)
T ss_pred hhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhh--cCCcceeec
Confidence 8999999999999999999999999999999999999876542211111 112334444556777 888888876
No 20
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=6.6e-15 Score=166.36 Aligned_cols=262 Identities=17% Similarity=0.152 Sum_probs=220.8
Q ss_pred ccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCC
Q 000326 10 QSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLP 89 (1661)
Q Consensus 10 ~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p 89 (1661)
+++.+..+...-++. |...|..|+..|..+.....+ .+.+...|.+|.||.+|+.. ++++|..+|.+|.||+-. .
T Consensus 165 ~sGaL~pltrLaksk-dirvqrnatgaLlnmThs~En--Rr~LV~aG~lpvLVsll~s~-d~dvqyycttaisnIaVd-~ 239 (550)
T KOG4224|consen 165 RSGALEPLTRLAKSK-DIRVQRNATGALLNMTHSREN--RRVLVHAGGLPVLVSLLKSG-DLDVQYYCTTAISNIAVD-R 239 (550)
T ss_pred hccchhhhHhhcccc-hhhHHHHHHHHHHHhhhhhhh--hhhhhccCCchhhhhhhccC-ChhHHHHHHHHhhhhhhh-H
Confidence 456677777733565 889999999988776665433 35688999999999999987 599999999999999853 4
Q ss_pred cchhhhcccc--cHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc--hhhhcCchHHHHhhhccCChHHHHHHHHHHHH
Q 000326 90 SSCAAVVHYG--AVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT--ACLRAGALMAVLSYLDFFSTGVQRVALSTAAN 165 (1661)
Q Consensus 90 ~~~~~vV~~G--aVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~--~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsN 165 (1661)
..+..+++.+ .||.|+ .|+......++-||.-||+||+.+... .|+++|+|+.++.+|........-..+.|+.|
T Consensus 240 ~~Rk~Laqaep~lv~~Lv-~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrn 318 (550)
T KOG4224|consen 240 RARKILAQAEPKLVPALV-DLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRN 318 (550)
T ss_pred HHHHHHHhcccchHHHHH-HHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhh
Confidence 5777788888 999999 899999999999999999999998774 79999999999999998888888888999999
Q ss_pred hccCCCCchhHHHhCcHHHHHHhhccCCHH-HHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCC
Q 000326 166 MCKKLPSDAADFVMEAVPLLTNLLQYHDAK-VLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQA 244 (1661)
Q Consensus 166 lc~~~~~~~~~~v~~~lp~L~~lL~~~D~~-v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~ 244 (1661)
++...-......-.+++..|+.+|...|.+ ++-.|...|-+|+.+ ...+...++++|.++++++|+...
T Consensus 319 isihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAas---se~n~~~i~esgAi~kl~eL~lD~------- 388 (550)
T KOG4224|consen 319 ISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAAS---SEHNVSVIRESGAIPKLIELLLDG------- 388 (550)
T ss_pred cccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhh---hhhhhHHHhhcCchHHHHHHHhcC-------
Confidence 998655555555678899999999998855 999999999999996 677889999999999999999876
Q ss_pred CCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCc
Q 000326 245 SLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGV 290 (1661)
Q Consensus 245 ~~s~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~ 290 (1661)
+.+++..+-.+++.++-. +.-...+++.|+++.|..++.+...
T Consensus 389 --pvsvqseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~ 431 (550)
T KOG4224|consen 389 --PVSVQSEISACIAQLALN-DNDKEALLDSGIIPILIPWTGSESE 431 (550)
T ss_pred --ChhHHHHHHHHHHHHHhc-cccHHHHhhcCCcceeecccCccch
Confidence 456888888888888765 4445789999999999998876654
No 21
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.5e-12 Score=160.56 Aligned_cols=175 Identities=13% Similarity=0.104 Sum_probs=130.7
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000326 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1661)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~ 91 (1661)
.-++.|+..|+.+.++++++.|+++|..++.... +....++..+.||.|++=|.-=...++-.++..||-.|.. ++
T Consensus 211 slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP-~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR---~H 286 (1051)
T KOG0168|consen 211 SLVPVLVALLSHEHNFDIMLLACRALTYLCEVLP-RSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISR---RH 286 (1051)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHhhcc-chhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHh---hc
Confidence 4567888889988899999999999988887763 3345677789999999877644467777888888888876 56
Q ss_pred hhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCc----chhhhcCchHHHHhhhccCChHHHHHHHHHHHHhc
Q 000326 92 CAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHP----TACLRAGALMAVLSYLDFFSTGVQRVALSTAANMC 167 (1661)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~----~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc 167 (1661)
-..++++|++-+.+ ..++--.+-.+..|+.+-.|+|..-+ ..|++ +++.|-.+|.+.+......++-|+..++
T Consensus 287 ~~AiL~AG~l~a~L-sylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~ 363 (1051)
T KOG0168|consen 287 PKAILQAGALSAVL-SYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIA 363 (1051)
T ss_pred cHHHHhcccHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 67899999999888 66776678899999999999997533 24554 5888888888888888888888888777
Q ss_pred cCC--CCchhHH--HhCcHHHHHHhhccCC
Q 000326 168 KKL--PSDAADF--VMEAVPLLTNLLQYHD 193 (1661)
Q Consensus 168 ~~~--~~~~~~~--v~~~lp~L~~lL~~~D 193 (1661)
.+- ....++. -.+.+.-...||..++
T Consensus 364 d~f~h~~~kLdql~s~dLi~~~~qLlsvt~ 393 (1051)
T KOG0168|consen 364 DGFQHGPDKLDQLCSHDLITNIQQLLSVTP 393 (1051)
T ss_pred HhcccChHHHHHHhchhHHHHHHHHHhcCc
Confidence 643 2222322 2355666666655443
No 22
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.48 E-value=2.5e-11 Score=155.70 Aligned_cols=349 Identities=19% Similarity=0.234 Sum_probs=252.6
Q ss_pred ccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhc
Q 000326 50 STFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQ 129 (1661)
Q Consensus 50 ~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~ 129 (1661)
..+...|+|+.||++|..+ +.++...+.++|.+|+-. .+++..+.+.|+||.|+ +|+.+++.++.+.++++|.|+|-
T Consensus 284 ~kM~~~~iV~~Lv~~Ldr~-n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~-kLl~s~~~~l~~~aLrlL~NLSf 360 (708)
T PF05804_consen 284 LKMVNKGIVSLLVKCLDRE-NEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLL-KLLPSENEDLVNVALRLLFNLSF 360 (708)
T ss_pred HHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHH-HHhcCCCHHHHHHHHHHHHHhCc
Confidence 4577899999999999876 699999999999999864 47889999999999999 99999999999999999999999
Q ss_pred cCcc--hhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHh-hccCCHHHHHHHHHHHHH
Q 000326 130 EHPT--ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNL-LQYHDAKVLEHASVCLTR 206 (1661)
Q Consensus 130 ~~~~--~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~l-L~~~D~~v~e~A~~aLs~ 206 (1661)
+... .+++.|.++.++.+|.. ...+..|+.++.|+|........-.-.+++|.|+.+ +..++..+-..+.+.+.|
T Consensus 361 d~~~R~~mV~~GlIPkLv~LL~d--~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iN 438 (708)
T PF05804_consen 361 DPELRSQMVSLGLIPKLVELLKD--PNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLIN 438 (708)
T ss_pred CHHHHHHHHHCCCcHHHHHHhCC--CchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHH
Confidence 8774 79999999999999984 456677999999999976666555567899999998 555677787778888888
Q ss_pred HHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCC-------------CCC----------------CCCCChhHHHHHHHH
Q 000326 207 IAEAFASSPDKLDELCNHGLVTQAATLISTSNS-------------GGG----------------QASLSTPTYTGLIRL 257 (1661)
Q Consensus 207 L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~-------------~~~----------------~~~~s~~i~~~alr~ 257 (1661)
++. ++.+.+.+++.|.++.|++....... .|. ...-+.+....|+.+
T Consensus 439 La~----~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGi 514 (708)
T PF05804_consen 439 LAL----NKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGI 514 (708)
T ss_pred Hhc----CHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHH
Confidence 887 67777888877777776654432210 000 000145667777777
Q ss_pred HHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhcccCCCCCCCCCCCCcccccccc
Q 000326 258 LSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVK 337 (1661)
Q Consensus 258 L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~~~~~~~~~~~~ 337 (1661)
|+|+...+.+-.+.+.+.++++.|..+|.... ...+.+.+++-+++ .+
T Consensus 515 LaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~------------~~dDl~LE~Vi~~g-tl------------------- 562 (708)
T PF05804_consen 515 LANLTIPDLDWAQLLQEYNLLPWLKDLLKPGA------------SEDDLLLEVVILLG-TL------------------- 562 (708)
T ss_pred HHhcccCCcCHHHHHHhCCHHHHHHHHhCCCC------------CChHHHHHHHHHHH-HH-------------------
Confidence 77777666666665666777777777776321 12344444444221 11
Q ss_pred CCcccCCCCCCCCCCCCCCCCcchhhhHHHhhccCHHHHHHHH-HHHHHHHHHHHhccC-ChHHHHHHHHHHHHHhhcCC
Q 000326 338 GPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFG-MDLLPVLIQIYGSSV-NSPVRHKCLSVIGKLMYFSS 415 (1661)
Q Consensus 338 g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~f~-~~l~p~Li~vy~ss~-~~~VR~~~L~~i~r~v~~~~ 415 (1661)
..+++....++ ..+.+.|++++.+.. |-.+=-.++.+.++++.+
T Consensus 563 --------------------------------a~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h-- 608 (708)
T PF05804_consen 563 --------------------------------ASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH-- 608 (708)
T ss_pred --------------------------------HCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC--
Confidence 12344444444 378889999986554 566667788899999988
Q ss_pred HHHHHHHhhhcchHHHHHHHhhcCCCchHHhHHHHHHHHHhhCchhhhhhHHhhcHHHH
Q 000326 416 AEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHA 474 (1661)
Q Consensus 416 ~~~L~~~l~~~~~ss~la~il~~~d~~l~~~aL~i~~~Ll~K~pd~f~~~f~REGV~~~ 474 (1661)
++.-..+++...+...+.-++..+++.+--.|=.+..++++--++ |....++|-.-..
T Consensus 609 ~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~-w~~ri~~~kF~~h 666 (708)
T PF05804_consen 609 EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEE-WAERIRREKFRWH 666 (708)
T ss_pred hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHH-HHHHhhHHHHHHH
Confidence 445556777777888888888777776666655666666655443 6666666655444
No 23
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.23 E-value=2.9e-09 Score=136.99 Aligned_cols=319 Identities=18% Similarity=0.165 Sum_probs=236.5
Q ss_pred HHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc--hhhhcCchHHHHhhhcc
Q 000326 73 IMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT--ACLRAGALMAVLSYLDF 150 (1661)
Q Consensus 73 iq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~--~Il~~GgL~~LL~lLd~ 150 (1661)
+...|...|.||++.. +....+++.|+|+.|+ ++|+....++...++++|.+||....+ .+.+.|++++|+.+++.
T Consensus 265 Llrv~~~lLlNLAed~-~ve~kM~~~~iV~~Lv-~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s 342 (708)
T PF05804_consen 265 LLRVAFYLLLNLAEDP-RVELKMVNKGIVSLLV-KCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPS 342 (708)
T ss_pred HHHHHHHHHHHHhcCh-HHHHHHHhcCCHHHHH-HHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcC
Confidence 4446778899999865 5666788999999999 999999999999999999999976554 78999999999999999
Q ss_pred CChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHH
Q 000326 151 FSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQA 230 (1661)
Q Consensus 151 ~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~L 230 (1661)
.+..++..+++++.|++..........-.+++|.|+.+|..+ .....|+..|++|+. +++....+...+.++.|
T Consensus 343 ~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~----dd~~r~~f~~TdcIp~L 416 (708)
T PF05804_consen 343 ENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSM----DDEARSMFAYTDCIPQL 416 (708)
T ss_pred CCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhcc----CHhhHHHHhhcchHHHH
Confidence 889999999999999999877777666779999999999754 455668888889988 67777888888999999
Q ss_pred HHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcccccccccccCCCHHHHHHH
Q 000326 231 ATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEI 310 (1661)
Q Consensus 231 v~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~v 310 (1661)
+++|.... ...+...++.++.|++... ..++.+.+.|.++.|....... ....+..+
T Consensus 417 ~~~Ll~~~--------~~~v~~eliaL~iNLa~~~-rnaqlm~~g~gL~~L~~ra~~~--------------~D~lLlKl 473 (708)
T PF05804_consen 417 MQMLLENS--------EEEVQLELIALLINLALNK-RNAQLMCEGNGLQSLMKRALKT--------------RDPLLLKL 473 (708)
T ss_pred HHHHHhCC--------CccccHHHHHHHHHHhcCH-HHHHHHHhcCcHHHHHHHHHhc--------------ccHHHHHH
Confidence 99887652 3445667888888888764 5568888878777777655431 12233344
Q ss_pred HHHhcccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCcchhhhHHHhhccCHHHHHHHHHHHHHHHHHH
Q 000326 311 VNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQI 390 (1661)
Q Consensus 311 i~li~~LLP~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~f~~~l~p~Li~v 390 (1661)
|+ ++..++ + . ...++..|+ .-|+.+
T Consensus 474 IR-----------NiS~h~--------------------~-------------~-------~k~~f~~~i----~~L~~~ 498 (708)
T PF05804_consen 474 IR-----------NISQHD--------------------G-------------P-------LKELFVDFI----GDLAKI 498 (708)
T ss_pred HH-----------HHHhcC--------------------c-------------h-------HHHHHHHHH----HHHHHH
Confidence 44 110000 0 0 011222233 334455
Q ss_pred HhccCChHHHHHHHHHHHHHhhcCCHHHHHHHhhhcchHHHHHHHhhcC--CCchHHhHHHHHHHHHhhCchhhhhhHHh
Q 000326 391 YGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWK--DPHVLIPSLQIAEILMEKLPGTFSKMFVR 468 (1661)
Q Consensus 391 y~ss~~~~VR~~~L~~i~r~v~~~~~~~L~~~l~~~~~ss~la~il~~~--d~~l~~~aL~i~~~Ll~K~pd~f~~~f~R 468 (1661)
....-+.+.--+||.++.++...- ..-..++++.++-.||..+|... ++.+++.+..++-.+.. -+.-...+.+
T Consensus 499 v~~~~~ee~~vE~LGiLaNL~~~~--ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~--d~~~A~lL~~ 574 (708)
T PF05804_consen 499 VSSGDSEEFVVECLGILANLTIPD--LDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS--DPECAPLLAK 574 (708)
T ss_pred hhcCCcHHHHHHHHHHHHhcccCC--cCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC--CHHHHHHHHh
Confidence 556667888889999999987642 24455777889999999999642 34566666666665553 2457788899
Q ss_pred hcHHHHHHHHHhc
Q 000326 469 EGVVHAVDQLILA 481 (1661)
Q Consensus 469 EGV~~~I~~L~~~ 481 (1661)
.|++..+-.|...
T Consensus 575 sgli~~Li~LL~~ 587 (708)
T PF05804_consen 575 SGLIPTLIELLNA 587 (708)
T ss_pred CChHHHHHHHHHh
Confidence 9999988888763
No 24
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.19 E-value=1.8e-08 Score=128.17 Aligned_cols=366 Identities=17% Similarity=0.188 Sum_probs=254.4
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhc
Q 000326 17 ILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVV 96 (1661)
Q Consensus 17 Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV 96 (1661)
|+..|+.. +.+....++..|.+++...... ....++.+.|...|.++ ++.++..|+++|.+++.........++
T Consensus 43 lf~~L~~~-~~e~v~~~~~iL~~~l~~~~~~----~l~~~~~~~L~~gL~h~-~~~Vr~l~l~~l~~~~~~~~~~~~~~~ 116 (503)
T PF10508_consen 43 LFDCLNTS-NREQVELICDILKRLLSALSPD----SLLPQYQPFLQRGLTHP-SPKVRRLALKQLGRIARHSEGAAQLLV 116 (503)
T ss_pred HHHHHhhc-ChHHHHHHHHHHHHHHhccCHH----HHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence 66677765 7777777888888887754322 12567788999999987 599999999999999988877778889
Q ss_pred ccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc--hhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCC-Cc
Q 000326 97 HYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT--ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLP-SD 173 (1661)
Q Consensus 97 ~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~--~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~-~~ 173 (1661)
+.++++.++ .++..++..+++.|+.+|.+|+..... .++..+.+..+..++...+..++..+..++.++|...+ ..
T Consensus 117 ~~~l~~~i~-~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~ 195 (503)
T PF10508_consen 117 DNELLPLII-QCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA 195 (503)
T ss_pred CccHHHHHH-HHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH
Confidence 999999999 899999999999999999999987665 47788889999999988677788889999999997543 22
Q ss_pred hhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHH
Q 000326 174 AADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTG 253 (1661)
Q Consensus 174 ~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~ 253 (1661)
....-.++++.+...|..+|.-+..+|+-+|..|+. .+...+.+.+.|++++|+++|...... | ..+.-....
T Consensus 196 ~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~----~~~g~~yL~~~gi~~~L~~~l~~~~~d--p-~~~~~~l~g 268 (503)
T PF10508_consen 196 EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE----TPHGLQYLEQQGIFDKLSNLLQDSEED--P-RLSSLLLPG 268 (503)
T ss_pred HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc----ChhHHHHHHhCCHHHHHHHHHhccccC--C-cccchhhhh
Confidence 333335799999999999999999999999999999 678899999999999999999876411 2 122234445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhcccCCCCCCCCCCCCcccc
Q 000326 254 LIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSN 333 (1661)
Q Consensus 254 alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~~~~~~~~ 333 (1661)
.++..++++..++....... -.++..|..++.+.+. .....+++-++.+ -.
T Consensus 269 ~~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~--------------~~~~~A~dtlg~i-gs------------- 319 (503)
T PF10508_consen 269 RMKFFGNLARVSPQEVLELY-PAFLERLFSMLESQDP--------------TIREVAFDTLGQI-GS------------- 319 (503)
T ss_pred HHHHHHHHHhcChHHHHHHH-HHHHHHHHHHhCCCCh--------------hHHHHHHHHHHHH-hC-------------
Confidence 56899999987655443222 2344444444443322 2222233311110 00
Q ss_pred ccccCCcccCCCCCCCCCCCCCCCCcchhhhHHHhhccCHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHhhc
Q 000326 334 MFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYF 413 (1661)
Q Consensus 334 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~f~~~l~p~Li~vy~ss~~~~VR~~~L~~i~r~v~~ 413 (1661)
...-+.-+....++.+..+++.+ . .+..+....+|-++|.++-.|+..
T Consensus 320 ---------------------------t~~G~~~L~~~~~~~~~~~l~~~----~-~~~~~~~~~lk~r~l~al~~il~~ 367 (503)
T PF10508_consen 320 ---------------------------TVEGKQLLLQKQGPAMKHVLKAI----G-DAIKSGSTELKLRALHALASILTS 367 (503)
T ss_pred ---------------------------CHHHHHHHHhhcchHHHHHHHHH----H-HHhcCCchHHHHHHHHHHHHHHhc
Confidence 01112222122333333333221 1 234456677999999999999877
Q ss_pred CCH---HHH----HH---HhhhcchHHHHHHHhhcCCCchHHhHHHHHHHHHhh
Q 000326 414 SSA---EMI----QS---LLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEK 457 (1661)
Q Consensus 414 ~~~---~~L----~~---~l~~~~~ss~la~il~~~d~~l~~~aL~i~~~Ll~K 457 (1661)
..+ +.+ +. .+...+...+|-+++.+.-+.+.+.|+.+..-|...
T Consensus 368 ~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 368 GTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred CCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 664 112 11 223345555777777666677888888777777654
No 25
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.17 E-value=5.7e-10 Score=128.45 Aligned_cols=196 Identities=18% Similarity=0.196 Sum_probs=165.7
Q ss_pred ccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccC
Q 000326 52 FSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEH 131 (1661)
Q Consensus 52 ~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~ 131 (1661)
+...+-+..|+.+|+...+|.+|..|..+|+|.+ +.|.....+.+.|+|+.+. .++..+++.++++|+|||.|+|...
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~a-af~~nq~~Ir~~Ggi~lI~-~lL~~p~~~vr~~AL~aL~Nls~~~ 85 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSA-AFPFNQDIIRDLGGISLIG-SLLNDPNPSVREKALNALNNLSVND 85 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhc-cChhHHHHHHHcCCHHHHH-HHcCCCChHHHHHHHHHHHhcCCCh
Confidence 4455668999999998778999999999999975 4567778888999999999 9999999999999999999999887
Q ss_pred cch-hhhcCchHHHHhhhcc--CChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHH
Q 000326 132 PTA-CLRAGALMAVLSYLDF--FSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIA 208 (1661)
Q Consensus 132 ~~~-Il~~GgL~~LL~lLd~--~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~ 208 (1661)
.+. .++. .+..++..+-. -+..+|..++.+|.|++...... ..+...+|.|..+|...+.++..+++++|.+|+
T Consensus 86 en~~~Ik~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~--~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 86 ENQEQIKM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYH--HMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred hhHHHHHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchh--hhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 763 3333 46666665433 47899999999999998754443 346779999999999999999999999999999
Q ss_pred hhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcC
Q 000326 209 EAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASG 264 (1661)
Q Consensus 209 ~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~ 264 (1661)
. ++.....++.++++..++.|+.... +.++...++.++.||..+
T Consensus 163 ~----np~~~~~Ll~~q~~~~~~~Lf~~~~--------~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 163 E----NPDMTRELLSAQVLSSFLSLFNSSE--------SKENLLRVLTFFENINEN 206 (254)
T ss_pred c----CHHHHHHHHhccchhHHHHHHccCC--------ccHHHHHHHHHHHHHHHh
Confidence 9 8999999999999999999998763 567888899999998654
No 26
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.10 E-value=4e-10 Score=114.54 Aligned_cols=115 Identities=25% Similarity=0.318 Sum_probs=105.8
Q ss_pred ccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccC
Q 000326 52 FSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEH 131 (1661)
Q Consensus 52 ~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~ 131 (1661)
+...|+++.|+++|.+. +++++..|+++|.|++...++....+++.|++|.|+ +++..++..+++.|+|+|+||+...
T Consensus 3 ~~~~~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~-~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 3 VIQAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALV-QLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred HHHcCChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHH-HHHhCCCHHHHHHHHHHHHHHccCc
Confidence 45778999999999976 489999999999999999899999999999999999 8899999999999999999999987
Q ss_pred cc---hhhhcCchHHHHhhhccCChHHHHHHHHHHHHhcc
Q 000326 132 PT---ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCK 168 (1661)
Q Consensus 132 ~~---~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~ 168 (1661)
+. .+.+.|.++.++.+|+..+..+++.|+|++.|+|.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 54 47789999999999999999999999999999983
No 27
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=5.2e-09 Score=118.67 Aligned_cols=263 Identities=14% Similarity=0.127 Sum_probs=212.5
Q ss_pred hHHHHHHHhh-cCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccC---
Q 000326 13 RLKKILSGLR-ADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVL--- 88 (1661)
Q Consensus 13 ~l~~Ll~~L~-s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~--- 88 (1661)
.+.-++..|. +.++.++-..+++.+++...| ++...+.|...++.|.+...|..+.-.....+++|+|..|....
T Consensus 146 g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~-hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiR 224 (461)
T KOG4199|consen 146 AMAVVLKLLALKVESEEVTLLTLQWLQKACIM-HEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIR 224 (461)
T ss_pred cHHHHHHHHhcccchHHHHHHHHHHHHHHHHH-hHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCcee
Confidence 3455566663 223778888888888776665 35555678888999999878776554578889999999998543
Q ss_pred ------CcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCc--chhhhcCchHHHHhhhccCCh----HHH
Q 000326 89 ------PSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHP--TACLRAGALMAVLSYLDFFST----GVQ 156 (1661)
Q Consensus 89 ------p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~--~~Il~~GgL~~LL~lLd~~~~----~vq 156 (1661)
..+...++..|+..+|++.|..-.++++......+|.-|+.+.. +.|.+.|||..++.+++..+. ..-
T Consensus 225 V~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~ 304 (461)
T KOG4199|consen 225 VVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLA 304 (461)
T ss_pred eecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHH
Confidence 24566788889999999777777789999999999999998766 489999999999999986433 355
Q ss_pred HHHHHHHHHhccCCCCchhHHHhCcHHHHHHh-hcc-CCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhh
Q 000326 157 RVALSTAANMCKKLPSDAADFVMEAVPLLTNL-LQY-HDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLI 234 (1661)
Q Consensus 157 r~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~l-L~~-~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL 234 (1661)
+.++..+.-++.+....+-..-++.+|.+..+ ++| +|+.|++.+|.|++.||-+ .|++-..+++.|.-...++-|
T Consensus 305 k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR---~pdhsa~~ie~G~a~~avqAm 381 (461)
T KOG4199|consen 305 KTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLR---SPDHSAKAIEAGAADLAVQAM 381 (461)
T ss_pred HHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhc---CcchHHHHHhcchHHHHHHHH
Confidence 67888888888887777777778999999999 555 5799999999999999996 999999999999999999999
Q ss_pred ccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhc
Q 000326 235 STSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILS 286 (1661)
Q Consensus 235 ~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~ 286 (1661)
..-. .-..++..+++++.||+..+.++...++..|+=..|.+...
T Consensus 382 kahP-------~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~ 426 (461)
T KOG4199|consen 382 KAHP-------VAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKA 426 (461)
T ss_pred HhCc-------HHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHh
Confidence 7541 24579999999999999999999999999997666665444
No 28
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.07 E-value=5.9e-09 Score=131.02 Aligned_cols=266 Identities=22% Similarity=0.207 Sum_probs=206.3
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc-
Q 000326 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPS- 90 (1661)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~- 90 (1661)
-.+++.+..|.+. ++.+|-.|...+ +.++..++.....+-.-|.||.||.+|.+. +.++|..|||||.||.-+...
T Consensus 233 ~~lpe~i~mL~~q-~~~~qsnaaayl-QHlcfgd~~ik~~vrqlggI~kLv~Ll~~~-~~evq~~acgaLRNLvf~~~~~ 309 (717)
T KOG1048|consen 233 PTLPEVISMLMSQ-DPSVQSNAAAYL-QHLCFGDNKIKSRVRQLGGIPKLVALLDHR-NDEVQRQACGALRNLVFGKSTD 309 (717)
T ss_pred cccHHHHHHHhcc-ChhhhHHHHHHH-HHHHhhhHHHHHHHHHhccHHHHHHHhcCC-cHHHHHHHHHHHHhhhcccCCc
Confidence 4678899999987 999999998888 888888776656777889999999999977 699999999999999988766
Q ss_pred -chhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhcc-----------------------C-------c-----c-
Q 000326 91 -SCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQE-----------------------H-------P-----T- 133 (1661)
Q Consensus 91 -~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~-----------------------~-------~-----~- 133 (1661)
..-.|.+++.||.|+..|-.+.+.+++|++.-+|-||+.. + + .
T Consensus 310 ~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~ 389 (717)
T KOG1048|consen 310 SNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDST 389 (717)
T ss_pred ccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccce
Confidence 7778999999999995555568999999999999998653 0 1 0
Q ss_pred ------hhh----------------hcCchHHHHhhhc------cCChHHHHHHHHHHHH--------------------
Q 000326 134 ------ACL----------------RAGALMAVLSYLD------FFSTGVQRVALSTAAN-------------------- 165 (1661)
Q Consensus 134 ------~Il----------------~~GgL~~LL~lLd------~~~~~vqr~Al~aLsN-------------------- 165 (1661)
-++ -.|.|.+|+.++. ..+....++|+.++.|
T Consensus 390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~ 469 (717)
T KOG1048|consen 390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANI 469 (717)
T ss_pred eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcc
Confidence 011 1356777776664 1233334444444444
Q ss_pred ----------------------------------------------------------------------------hccC
Q 000326 166 ----------------------------------------------------------------------------MCKK 169 (1661)
Q Consensus 166 ----------------------------------------------------------------------------lc~~ 169 (1661)
++.+
T Consensus 470 ~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~ 549 (717)
T KOG1048|consen 470 ARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAG 549 (717)
T ss_pred cccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhcc
Confidence 4432
Q ss_pred CCCchh------HHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCC
Q 000326 170 LPSDAA------DFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQ 243 (1661)
Q Consensus 170 ~~~~~~------~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~ 243 (1661)
.....- ...+..+|.|+.+|+.+|..|+..++.+|.||+.+ . ..+.++..++++.|++.|.... +.
T Consensus 550 ~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d----~-rnk~ligk~a~~~lv~~Lp~~~---~~ 621 (717)
T KOG1048|consen 550 LWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD----I-RNKELIGKYAIPDLVRCLPGSG---PS 621 (717)
T ss_pred CCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC----c-hhhhhhhcchHHHHHHhCcCCC---CC
Confidence 211110 01234679999999999999999999999999983 3 4455565889999999997653 34
Q ss_pred CCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCC
Q 000326 244 ASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGS 288 (1661)
Q Consensus 244 ~~~s~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~ 288 (1661)
..++.++...++.+|-+|.+.+...+..+++.+.++.|+-|..+.
T Consensus 622 ~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~ 666 (717)
T KOG1048|consen 622 TSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQ 666 (717)
T ss_pred cCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhccc
Confidence 668899999999999999999999999999999999999998873
No 29
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.97 E-value=4.8e-08 Score=124.34 Aligned_cols=252 Identities=21% Similarity=0.207 Sum_probs=204.4
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000326 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1661)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~ 91 (1661)
+-+..+++.|... ...++++..+...+.... +...-..+.+..+|+.. +.+....+|.+|..+.....
T Consensus 3 ~~~~~~l~~l~~~---~~~~~~L~~l~~~~~~~~------~l~~~~~~~lf~~L~~~-~~e~v~~~~~iL~~~l~~~~-- 70 (503)
T PF10508_consen 3 EWINELLEELSSK---AERLEALPELKTELSSSP------FLERLPEPVLFDCLNTS-NREQVELICDILKRLLSALS-- 70 (503)
T ss_pred hHHHHHHHHHhcc---cchHHHHHHHHHHHhhhh------HHHhchHHHHHHHHhhc-ChHHHHHHHHHHHHHHhccC--
Confidence 3467888888776 456677777766555432 11122234488889865 57777899999999998542
Q ss_pred hhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc---hhhhcCchHHHHhhhccCChHHHHHHHHHHHHhcc
Q 000326 92 CAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCK 168 (1661)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~ 168 (1661)
...+ ..+..+.|. ..|.++++.+++.|+++|++++++... .+.+.+.++.++..|...+..+...|+.++.+++.
T Consensus 71 ~~~l-~~~~~~~L~-~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~ 148 (503)
T PF10508_consen 71 PDSL-LPQYQPFLQ-RGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS 148 (503)
T ss_pred HHHH-HHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC
Confidence 2222 446777777 899999999999999999999987664 47789999999999999999999999999999998
Q ss_pred CCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCCh
Q 000326 169 KLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLST 248 (1661)
Q Consensus 169 ~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~ 248 (1661)
.........-.+.++.|..++...+..+.-.++.++.+|+.. +++..+.+.+.|+++.++..|... +.
T Consensus 149 ~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~---S~~~~~~~~~sgll~~ll~eL~~d---------Di 216 (503)
T PF10508_consen 149 HPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASH---SPEAAEAVVNSGLLDLLLKELDSD---------DI 216 (503)
T ss_pred CchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhc---CHHHHHHHHhccHHHHHHHHhcCc---------cH
Confidence 665444433456799999999988888888999999999985 999999999999999999999885 56
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCc
Q 000326 249 PTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGV 290 (1661)
Q Consensus 249 ~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~ 290 (1661)
-++..++.+|+.||. ++...+.|.+.|+++.|..+|.+...
T Consensus 217 Lvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~ 257 (503)
T PF10508_consen 217 LVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEE 257 (503)
T ss_pred HHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhcccc
Confidence 789999999999999 77778999999999999999987654
No 30
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.92 E-value=2.4e-08 Score=115.09 Aligned_cols=221 Identities=16% Similarity=0.120 Sum_probs=170.1
Q ss_pred ccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCC
Q 000326 10 QSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLP 89 (1661)
Q Consensus 10 ~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p 89 (1661)
.+..++.|+..|....||.+|..|+..+++......++ ..+...|.++.+..+|..+ ++.++..|.+||.|++...
T Consensus 10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq--~~Ir~~Ggi~lI~~lL~~p-~~~vr~~AL~aL~Nls~~~- 85 (254)
T PF04826_consen 10 EAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQ--DIIRDLGGISLIGSLLNDP-NPSVREKALNALNNLSVND- 85 (254)
T ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHH--HHHHHcCCHHHHHHHcCCC-ChHHHHHHHHHHHhcCCCh-
Confidence 45689999999997779999999999999865544332 3466779999999999987 5999999999999998654
Q ss_pred cchhhhcccccHHHHHHHHhcCC-cHHHHHHHHHHHHHhhccCcc-hhhhcCchHHHHhhhccCChHHHHHHHHHHHHhc
Q 000326 90 SSCAAVVHYGAVTCFVARLLTIE-YMDLAEQSLQALKKISQEHPT-ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMC 167 (1661)
Q Consensus 90 ~~~~~vV~~GaVp~Lv~kLL~~~-~~dl~Eqal~aL~nIS~~~~~-~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc 167 (1661)
+....|- ..|+.+|+...... +.+++..++.+|.|++..... .++ .+.++.++.+|...+..+|..+++++.|++
T Consensus 86 en~~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l-~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 86 ENQEQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHML-ANYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred hhHHHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhH-HhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 3444443 36888995555543 579999999999999876554 344 457999999999999999999999999999
Q ss_pred cCCCCchhHHHhCcHHHHHHhhccC-CHHHHHHHHHHHHHHHhhcCCCHH----------HHHHHH-hCC-cHHHHHHhh
Q 000326 168 KKLPSDAADFVMEAVPLLTNLLQYH-DAKVLEHASVCLTRIAEAFASSPD----------KLDELC-NHG-LVTQAATLI 234 (1661)
Q Consensus 168 ~~~~~~~~~~v~~~lp~L~~lL~~~-D~~v~e~A~~aLs~L~~~~~~~~e----------~~~~li-~~g-ll~~Lv~LL 234 (1661)
.+..........++++.|..+++.. +.+++..+++.+.||.++++.... -+-.++ +.+ +.++|..|+
T Consensus 163 ~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~ 242 (254)
T PF04826_consen 163 ENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALA 242 (254)
T ss_pred cCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHHH
Confidence 8766555556678999999998875 799999999999999988644311 111222 222 566666666
Q ss_pred ccC
Q 000326 235 STS 237 (1661)
Q Consensus 235 ~~~ 237 (1661)
.|+
T Consensus 243 ~h~ 245 (254)
T PF04826_consen 243 NHP 245 (254)
T ss_pred cCC
Confidence 665
No 31
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.92 E-value=1.1e-08 Score=104.02 Aligned_cols=118 Identities=26% Similarity=0.273 Sum_probs=103.9
Q ss_pred hhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHh-CcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcC
Q 000326 134 ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVM-EAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFA 212 (1661)
Q Consensus 134 ~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~-~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~ 212 (1661)
.+++.|+++.++.+|...+..++..++|++.|+|...+......+. +++|.|..+|.++|++++..|+|+|++|+..
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~-- 79 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAG-- 79 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccC--
Confidence 3678899999999999888999999999999999975444444444 9999999999999999999999999999996
Q ss_pred CCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhc
Q 000326 213 SSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCAS 263 (1661)
Q Consensus 213 ~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas 263 (1661)
.+...+.+++.|+++.|+++|... +..++..++++|.+||.
T Consensus 80 -~~~~~~~~~~~g~l~~l~~~l~~~---------~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 80 -PEDNKLIVLEAGGVPKLVNLLDSS---------NEDIQKNATGALSNLAS 120 (120)
T ss_pred -cHHHHHHHHHCCChHHHHHHHhcC---------CHHHHHHHHHHHHHhhC
Confidence 778888889999999999999875 57899999999999974
No 32
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=5.6e-08 Score=110.54 Aligned_cols=276 Identities=12% Similarity=0.103 Sum_probs=215.5
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCC-CCHHHHHHHHHHHHHhhccCCcchhhhcccc
Q 000326 21 LRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHE-SNPDIMLLAARALTHLCDVLPSSCAAVVHYG 99 (1661)
Q Consensus 21 L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~-~~~eiq~~A~raL~NLa~~~p~~~~~vV~~G 99 (1661)
|.+..|...-+.+|..|..+... +++ +........++.+|... ++.++-....+++..-|-..-..++.+++.+
T Consensus 115 la~~~~~~~l~ksL~al~~lt~~-qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~ 189 (461)
T KOG4199|consen 115 LAESPNESVLKKSLEAINSLTHK-QPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELK 189 (461)
T ss_pred HhhCCchhHHHHHHHHHHHhhcC-Ccc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 45555888889999999655443 333 44556677788888632 3567777777788777777767788899999
Q ss_pred cHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCc------------chhhhcCchHHHHhhhc-cCChHHHHHHHHHHHHh
Q 000326 100 AVTCFVARLLTIEYMDLAEQSLQALKKISQEHP------------TACLRAGALMAVLSYLD-FFSTGVQRVALSTAANM 166 (1661)
Q Consensus 100 aVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~------------~~Il~~GgL~~LL~lLd-~~~~~vqr~Al~aLsNl 166 (1661)
+.|.+.+-|......++.....|++.-+-.+.. ..|.+.|++..|+..|. +-++.+...++.++..+
T Consensus 190 il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~l 269 (461)
T KOG4199|consen 190 ILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKAL 269 (461)
T ss_pred HHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHH
Confidence 999999777777777888899999999976522 36999999999999997 45788998999998888
Q ss_pred ccCCCCchhHHHhCcHHHHHHhhcc-CCH---HHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCC
Q 000326 167 CKKLPSDAADFVMEAVPLLTNLLQY-HDA---KVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGG 242 (1661)
Q Consensus 167 c~~~~~~~~~~v~~~lp~L~~lL~~-~D~---~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~ 242 (1661)
+-+.+.-....-.+.+.+|..++.. .+. .....+|..|..|+. +++....+++.|.++.++.++..-.
T Consensus 270 AVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG----~DsvKs~IV~~gg~~~ii~l~~~h~---- 341 (461)
T KOG4199|consen 270 AVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG----SDSVKSTIVEKGGLDKIITLALRHS---- 341 (461)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC----CCchHHHHHHhcChHHHHHHHHHcC----
Confidence 8765544445567899999999876 443 355677777777776 7889999999999999999986432
Q ss_pred CCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCc------ccccccccccCCCHHHHHHHHH
Q 000326 243 QASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGV------SANSAVPPALSRPAEQIFEIVN 312 (1661)
Q Consensus 243 ~~~~s~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~------~~~~~~s~i~~~~~~qi~~vi~ 312 (1661)
-++.++..++.+++.||-.+|+.+..+++.|+.+...+.|...+. .+||.+-|+..+..++-.-++.
T Consensus 342 ---~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~ 414 (461)
T KOG4199|consen 342 ---DDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLA 414 (461)
T ss_pred ---CChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHh
Confidence 278899999999999999999999999999999999999987653 5677777776666666555554
No 33
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=98.48 E-value=8.6e-07 Score=115.12 Aligned_cols=235 Identities=17% Similarity=0.145 Sum_probs=181.3
Q ss_pred CcccccccccCcHHHHHHhhcCC-----------CCHHHHHHHHHHHHHhhccCCcchhhhc-ccccHHHHHHHHhcCCc
Q 000326 46 EESLSTFSVDSFAPVLVGLLNHE-----------SNPDIMLLAARALTHLCDVLPSSCAAVV-HYGAVTCFVARLLTIEY 113 (1661)
Q Consensus 46 ~~~l~~~~~~g~vp~Lv~lL~~~-----------~~~eiq~~A~raL~NLa~~~p~~~~~vV-~~GaVp~Lv~kLL~~~~ 113 (1661)
|+....+-.-|.+.++-+||.-+ .+..+...|..+||||.-+.-.+...+. ..|.+.++| .-|.+..
T Consensus 329 EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavV-AQL~s~p 407 (2195)
T KOG2122|consen 329 EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVV-AQLISAP 407 (2195)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHH-HHHhcCh
Confidence 33334555667777777766522 1345778999999999988776666554 779999999 5666666
Q ss_pred HHHHHHHHHHHHHhhccCc---chhh-hcCchHHHHhhh-ccCChHHHHHHHHHHHHhccCC--CCchhHHHhCcHHHHH
Q 000326 114 MDLAEQSLQALKKISQEHP---TACL-RAGALMAVLSYL-DFFSTGVQRVALSTAANMCKKL--PSDAADFVMEAVPLLT 186 (1661)
Q Consensus 114 ~dl~Eqal~aL~nIS~~~~---~~Il-~~GgL~~LL~lL-d~~~~~vqr~Al~aLsNlc~~~--~~~~~~~v~~~lp~L~ 186 (1661)
.+|..-...+|.||+=+-. +.++ +.|-+.+|...- ........+..+.+|.||..+. ....|-.+-++|-.|+
T Consensus 408 eeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLV 487 (2195)
T KOG2122|consen 408 EELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLV 487 (2195)
T ss_pred HHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHH
Confidence 7888888899999984433 3455 467777776654 3445566777777778887754 2345556789999999
Q ss_pred HhhccCC----HHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHh
Q 000326 187 NLLQYHD----AKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCA 262 (1661)
Q Consensus 187 ~lL~~~D----~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLa 262 (1661)
.+|.+.- -.|+++|--.|-|+..-......+.|.+.++++|..|+++|.+. +..++..++.+|.||.
T Consensus 488 g~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~---------SLTiVSNaCGTLWNLS 558 (2195)
T KOG2122|consen 488 GTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH---------SLTIVSNACGTLWNLS 558 (2195)
T ss_pred hhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc---------ceEEeecchhhhhhhh
Confidence 9998873 58999988888777766556888999999999999999999876 5668889999999999
Q ss_pred cCCHHHHHHHHHcCChHHHHHhhcCCCc
Q 000326 263 SGSPLCAKTLLHLGISGILKDILSGSGV 290 (1661)
Q Consensus 263 s~s~~~t~~Ll~~gil~~L~~LL~~~~~ 290 (1661)
..+++-.+.|.+.|+++.|..|+.+..+
T Consensus 559 AR~p~DQq~LwD~gAv~mLrnLIhSKhk 586 (2195)
T KOG2122|consen 559 ARSPEDQQMLWDDGAVPMLRNLIHSKHK 586 (2195)
T ss_pred cCCHHHHHHHHhcccHHHHHHHHhhhhh
Confidence 9999999999999999999999987664
No 34
>PTZ00429 beta-adaptin; Provisional
Probab=98.44 E-value=0.00016 Score=95.00 Aligned_cols=372 Identities=14% Similarity=0.149 Sum_probs=192.1
Q ss_pred ccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCC
Q 000326 10 QSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLP 89 (1661)
Q Consensus 10 ~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p 89 (1661)
+.+++.+|-+.|++. |...+.+|++.+=-+..++. ....+.+..++++... +.+++....-.|.++++..|
T Consensus 30 ~kge~~ELr~~L~s~-~~~~kk~alKkvIa~mt~G~-------DvS~LF~dVvk~~~S~-d~elKKLvYLYL~~ya~~~p 100 (746)
T PTZ00429 30 RRGEGAELQNDLNGT-DSYRKKAAVKRIIANMTMGR-------DVSYLFVDVVKLAPST-DLELKKLVYLYVLSTARLQP 100 (746)
T ss_pred ccchHHHHHHHHHCC-CHHHHHHHHHHHHHHHHCCC-------CchHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcccCh
Confidence 466889999999887 77888888877655555542 2334566666777655 46777666666777766555
Q ss_pred cchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccC
Q 000326 90 SSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKK 169 (1661)
Q Consensus 90 ~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~ 169 (1661)
+..-. +|..|. +=+..+++-++-.|+.+|++|-... +++ -.+.++.+.|.+.++.+.+.|+.|+..+.+.
T Consensus 101 elalL-----aINtl~-KDl~d~Np~IRaLALRtLs~Ir~~~---i~e-~l~~~lkk~L~D~~pYVRKtAalai~Kly~~ 170 (746)
T PTZ00429 101 EKALL-----AVNTFL-QDTTNSSPVVRALAVRTMMCIRVSS---VLE-YTLEPLRRAVADPDPYVRKTAAMGLGKLFHD 170 (746)
T ss_pred HHHHH-----HHHHHH-HHcCCCCHHHHHHHHHHHHcCCcHH---HHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Confidence 44322 344555 4455556666666666666654311 111 2344455555556666666666666666554
Q ss_pred CCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHH-------H-------------------h
Q 000326 170 LPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDEL-------C-------------------N 223 (1661)
Q Consensus 170 ~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~l-------i-------------------~ 223 (1661)
.+.. ....+.++.|..+|...|+.|+.+|+.+|..|... .+..+... + .
T Consensus 171 ~pel--v~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~---~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~ 245 (746)
T PTZ00429 171 DMQL--FYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDY---GSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAA 245 (746)
T ss_pred Cccc--ccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHh
Confidence 4321 22344555566666666666666666666666543 11111110 0 0
Q ss_pred ---------CCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCC-HHHHHHHHHcCChHHHHHhhcCCCcccc
Q 000326 224 ---------HGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGS-PLCAKTLLHLGISGILKDILSGSGVSAN 293 (1661)
Q Consensus 224 ---------~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s-~~~t~~Ll~~gil~~L~~LL~~~~~~~~ 293 (1661)
..++..+...|.+. ++.++..+++++.++.... ++....++. .+...|..|+.+... ..
T Consensus 246 y~P~~~~e~~~il~~l~~~Lq~~---------N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L~ss~~e-iq 314 (746)
T PTZ00429 246 QRPSDKESAETLLTRVLPRMSHQ---------NPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTLSRRDAE-TQ 314 (746)
T ss_pred cCCCCcHHHHHHHHHHHHHhcCC---------CHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHhhCCCcc-HH
Confidence 12445555555554 5678888888888877543 332222221 122345555432221 11
Q ss_pred cccccccCCCHHHHHHHHHHhcccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCcchhhhHHHhhc--c
Q 000326 294 SAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLS--D 371 (1661)
Q Consensus 294 ~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~ 371 (1661)
..+ ...|.+|..--|.+....++ ..|.+ ... + . -....+.+++. .
T Consensus 315 yva-----------Lr~I~~i~~~~P~lf~~~~~-----~Ff~~-----~~D---------p--~-yIK~~KLeIL~~La 361 (746)
T PTZ00429 315 YIV-----------CKNIHALLVIFPNLLRTNLD-----SFYVR-----YSD---------P--P-FVKLEKLRLLLKLV 361 (746)
T ss_pred HHH-----------HHHHHHHHHHCHHHHHHHHH-----hhhcc-----cCC---------c--H-HHHHHHHHHHHHHc
Confidence 110 01112222222322211000 00000 000 0 0 01112222221 1
Q ss_pred CHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHhhcCCHHHHHHHhhhcchHHHHHHHhhcCCCchHHhHHHHH
Q 000326 372 QPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIA 451 (1661)
Q Consensus 372 ~~e~~~~f~~~l~p~Li~vy~ss~~~~VR~~~L~~i~r~v~~~~~~~L~~~l~~~~~ss~la~il~~~d~~l~~~aL~i~ 451 (1661)
+++=+..++++| . -|...++..++++++.+|.++..-. +.... .+-.+|..++..+.. ++..++..+
T Consensus 362 ne~Nv~~IL~EL----~-eYa~d~D~ef~r~aIrAIg~lA~k~-~~~a~------~cV~~Ll~ll~~~~~-~v~e~i~vi 428 (746)
T PTZ00429 362 TPSVAPEILKEL----A-EYASGVDMVFVVEVVRAIASLAIKV-DSVAP------DCANLLLQIVDRRPE-LLPQVVTAA 428 (746)
T ss_pred CcccHHHHHHHH----H-HHhhcCCHHHHHHHHHHHHHHHHhC-hHHHH------HHHHHHHHHhcCCch-hHHHHHHHH
Confidence 222233333333 2 3777899999999999999976432 22222 333455555654333 566788889
Q ss_pred HHHHhhCchhh
Q 000326 452 EILMEKLPGTF 462 (1661)
Q Consensus 452 ~~Ll~K~pd~f 462 (1661)
+.|++|.|+.|
T Consensus 429 k~IlrkyP~~~ 439 (746)
T PTZ00429 429 KDIVRKYPELL 439 (746)
T ss_pred HHHHHHCccHH
Confidence 99999999854
No 35
>PRK09687 putative lyase; Provisional
Probab=98.43 E-value=8.6e-06 Score=96.06 Aligned_cols=212 Identities=15% Similarity=0.085 Sum_probs=157.8
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000326 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1661)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~ 91 (1661)
-.++.|+..|.+. |..++..|+..|.++ ....+++.+..+++++ ++.++..|+|+|+.|-... .
T Consensus 23 ~~~~~L~~~L~d~-d~~vR~~A~~aL~~~------------~~~~~~~~l~~ll~~~-d~~vR~~A~~aLg~lg~~~--~ 86 (280)
T PRK09687 23 LNDDELFRLLDDH-NSLKRISSIRVLQLR------------GGQDVFRLAIELCSSK-NPIERDIGADILSQLGMAK--R 86 (280)
T ss_pred ccHHHHHHHHhCC-CHHHHHHHHHHHHhc------------CcchHHHHHHHHHhCC-CHHHHHHHHHHHHhcCCCc--c
Confidence 3577888889776 999999999999643 1234577888888776 5999999999999985421 1
Q ss_pred hhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCC
Q 000326 92 CAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLP 171 (1661)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~ 171 (1661)
. ..-++|.|...++..++..|+..|+.+|++++...... ....+..+...+...+..+++.|++++.++..
T Consensus 87 ~----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~--~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--- 157 (280)
T PRK09687 87 C----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY--SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--- 157 (280)
T ss_pred c----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc--chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC---
Confidence 1 22467888844478889999999999999996543321 12245556666777788999999999976531
Q ss_pred CchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHH
Q 000326 172 SDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTY 251 (1661)
Q Consensus 172 ~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~ 251 (1661)
..+++.|..+|..+|..|...|+.+|..+... ++ .+++.|+.+|... +..+.
T Consensus 158 -------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~---~~---------~~~~~L~~~L~D~---------~~~VR 209 (280)
T PRK09687 158 -------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYD---NP---------DIREAFVAMLQDK---------NEEIR 209 (280)
T ss_pred -------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC---CH---------HHHHHHHHHhcCC---------ChHHH
Confidence 34899999999999999999999999998432 22 3566788888665 57899
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcC
Q 000326 252 TGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSG 287 (1661)
Q Consensus 252 ~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~ 287 (1661)
..+++.|+.+- ++. +++.|...|..
T Consensus 210 ~~A~~aLg~~~--~~~---------av~~Li~~L~~ 234 (280)
T PRK09687 210 IEAIIGLALRK--DKR---------VLSVLIKELKK 234 (280)
T ss_pred HHHHHHHHccC--Chh---------HHHHHHHHHcC
Confidence 99999999853 333 45666676664
No 36
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=98.41 E-value=1.1e-06 Score=110.90 Aligned_cols=198 Identities=18% Similarity=0.241 Sum_probs=162.6
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc---
Q 000326 57 FAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT--- 133 (1661)
Q Consensus 57 ~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~--- 133 (1661)
-+|..+.+|.+. ++.+|..|+--|-.+|-+..+....|-+.|.||.|| .|+.+...+++.||+|||.||.-....
T Consensus 234 ~lpe~i~mL~~q-~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv-~Ll~~~~~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 234 TLPEVISMLMSQ-DPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLV-ALLDHRNDEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccHHHHHHHhcc-ChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHH-HHhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence 488999999876 589999999999999999888888899999999999 999999999999999999999754332
Q ss_pred --hhhhcCchHHHHhhhcc-CChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhc--cC------------CHHH
Q 000326 134 --ACLRAGALMAVLSYLDF-FSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQ--YH------------DAKV 196 (1661)
Q Consensus 134 --~Il~~GgL~~LL~lLd~-~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~--~~------------D~~v 196 (1661)
+|.+++||+.++.+|.. .+..+++.+.-++.||..+ +.-....+.+++++|...+- +. +..|
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~v 390 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTV 390 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccee
Confidence 69999999999999986 6889999999999999987 44555678889999988742 22 5789
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHhC-CcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhc
Q 000326 197 LEHASVCLTRIAEAFASSPDKLDELCNH-GLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCAS 263 (1661)
Q Consensus 197 ~e~A~~aLs~L~~~~~~~~e~~~~li~~-gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas 263 (1661)
..++..||.|+... ..+..+.+-+. |+|..|+..+.+.-. -...+...+..|+-+|.|+.-
T Consensus 391 f~n~tgcLRNlSs~---~~eaR~~mr~c~GLIdaL~~~iq~~i~---~~~~d~K~VENcvCilRNLSY 452 (717)
T KOG1048|consen 391 FRNVTGCLRNLSSA---GQEAREQMRECDGLIDALLFSIQTAIQ---KSDLDSKSVENCVCILRNLSY 452 (717)
T ss_pred eehhhhhhccccch---hHHHHHHHhhccchHHHHHHHHHHHHH---hccccchhHHHHHHHHhhcCc
Confidence 99999999999985 67777777655 899999999974310 111345577778888888754
No 37
>PRK09687 putative lyase; Provisional
Probab=98.36 E-value=1e-05 Score=95.39 Aligned_cols=208 Identities=12% Similarity=0.022 Sum_probs=154.4
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch
Q 000326 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC 92 (1661)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~ 92 (1661)
-+..+...++++ |+..+..|++.|+++=. .+. .....++.|..++..+.++.++..|+.+|++++...+..
T Consensus 55 ~~~~l~~ll~~~-d~~vR~~A~~aLg~lg~---~~~----~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~- 125 (280)
T PRK09687 55 VFRLAIELCSSK-NPIERDIGADILSQLGM---AKR----CQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY- 125 (280)
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHhcCC---Ccc----chHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-
Confidence 344444444555 99999999999987421 110 123568889988555556999999999999996533211
Q ss_pred hhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCCC
Q 000326 93 AAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPS 172 (1661)
Q Consensus 93 ~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~ 172 (1661)
..-++..|. .++...+..++..++++|++|.. ..+++.|+.+|...+..+...|+.+|.+++.+.
T Consensus 126 ----~~~a~~~l~-~~~~D~~~~VR~~a~~aLg~~~~--------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~-- 190 (280)
T PRK09687 126 ----SPKIVEQSQ-ITAFDKSTNVRFAVAFALSVIND--------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN-- 190 (280)
T ss_pred ----chHHHHHHH-HHhhCCCHHHHHHHHHHHhccCC--------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC--
Confidence 112556666 67777899999999999988753 237899999999988999999999999984321
Q ss_pred chhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHH
Q 000326 173 DAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYT 252 (1661)
Q Consensus 173 ~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~ 252 (1661)
..+++.|..+|...|..|...|.++|.++-+. .+++.|++.|...+ +..
T Consensus 191 ------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~--------------~av~~Li~~L~~~~-----------~~~ 239 (280)
T PRK09687 191 ------PDIREAFVAMLQDKNEEIRIEAIIGLALRKDK--------------RVLSVLIKELKKGT-----------VGD 239 (280)
T ss_pred ------HHHHHHHHHHhcCCChHHHHHHHHHHHccCCh--------------hHHHHHHHHHcCCc-----------hHH
Confidence 25789999999999999999999999986552 47888999997642 567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhc
Q 000326 253 GLIRLLSTCASGSPLCAKTLLHLGISGILKDILS 286 (1661)
Q Consensus 253 ~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~ 286 (1661)
.++.+|+.|-. +. .++.|.+++.
T Consensus 240 ~a~~ALg~ig~--~~---------a~p~L~~l~~ 262 (280)
T PRK09687 240 LIIEAAGELGD--KT---------LLPVLDTLLY 262 (280)
T ss_pred HHHHHHHhcCC--Hh---------HHHHHHHHHh
Confidence 78888888754 22 3566666665
No 38
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.31 E-value=6.7e-05 Score=96.86 Aligned_cols=222 Identities=20% Similarity=0.192 Sum_probs=164.2
Q ss_pred CHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHH
Q 000326 26 EEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFV 105 (1661)
Q Consensus 26 D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv 105 (1661)
+...+.+++..|--+...+. ....+.+.+++++.+. +..++..+--++..+....++.... ++..|.
T Consensus 19 ~~~~~~~~l~kli~~~~~G~-------~~~~~~~~vi~l~~s~-~~~~Krl~yl~l~~~~~~~~~~~~l-----~~n~l~ 85 (526)
T PF01602_consen 19 DISKKKEALKKLIYLMMLGY-------DISFLFMEVIKLISSK-DLELKRLGYLYLSLYLHEDPELLIL-----IINSLQ 85 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTT----------GSTHHHHHCTCSSS-SHHHHHHHHHHHHHHTTTSHHHHHH-----HHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCC-------CCchHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhcchhHHHH-----HHHHHH
Confidence 77888889888877666654 2336788899999854 6899988888888888877763322 566777
Q ss_pred HHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhC-cHHH
Q 000326 106 ARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVME-AVPL 184 (1661)
Q Consensus 106 ~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~-~lp~ 184 (1661)
+=+.++++.++..|+.+|++|+. ..+++ -.++.+..+|.+.++.++++|+-++..+++..|.. +.. .+|.
T Consensus 86 -kdl~~~n~~~~~lAL~~l~~i~~---~~~~~-~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~----~~~~~~~~ 156 (526)
T PF01602_consen 86 -KDLNSPNPYIRGLALRTLSNIRT---PEMAE-PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL----VEDELIPK 156 (526)
T ss_dssp -HHHCSSSHHHHHHHHHHHHHH-S---HHHHH-HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC----HHGGHHHH
T ss_pred -HhhcCCCHHHHHHHHhhhhhhcc---cchhh-HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH----HHHHHHHH
Confidence 66788899999999999999982 22332 36788899999999999999999999999864332 233 6999
Q ss_pred HHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcC
Q 000326 185 LTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASG 264 (1661)
Q Consensus 185 L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~ 264 (1661)
|..+|...|+.|+..|+.++..+ .. ++.... -+-..++..|.+++... ++-.+..++++|..++..
T Consensus 157 l~~lL~d~~~~V~~~a~~~l~~i-~~---~~~~~~-~~~~~~~~~L~~~l~~~---------~~~~q~~il~~l~~~~~~ 222 (526)
T PF01602_consen 157 LKQLLSDKDPSVVSAALSLLSEI-KC---NDDSYK-SLIPKLIRILCQLLSDP---------DPWLQIKILRLLRRYAPM 222 (526)
T ss_dssp HHHHTTHSSHHHHHHHHHHHHHH-HC---THHHHT-THHHHHHHHHHHHHTCC---------SHHHHHHHHHHHTTSTSS
T ss_pred HhhhccCCcchhHHHHHHHHHHH-cc---Ccchhh-hhHHHHHHHhhhccccc---------chHHHHHHHHHHHhcccC
Confidence 99999999999999999999999 21 333222 12223456666666444 688999999999999998
Q ss_pred CHHHHHHHHHcCChHHHHHhhc
Q 000326 265 SPLCAKTLLHLGISGILKDILS 286 (1661)
Q Consensus 265 s~~~t~~Ll~~gil~~L~~LL~ 286 (1661)
.+..... ..+++.+..+|.
T Consensus 223 ~~~~~~~---~~~i~~l~~~l~ 241 (526)
T PF01602_consen 223 EPEDADK---NRIIEPLLNLLQ 241 (526)
T ss_dssp SHHHHHH---HHHHHHHHHHHH
T ss_pred ChhhhhH---HHHHHHHHHHhh
Confidence 8777632 344556777666
No 39
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=98.29 E-value=4.3e-06 Score=108.94 Aligned_cols=225 Identities=17% Similarity=0.126 Sum_probs=166.8
Q ss_pred HHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc-cCCcchhhhcccccHHHHHH
Q 000326 28 GKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCD-VLPSSCAAVVHYGAVTCFVA 106 (1661)
Q Consensus 28 ~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~-~~p~~~~~vV~~GaVp~Lv~ 106 (1661)
.++.-|+.+|.+|--...+-...-+-..||+..+|..|.... .+++..-+-+|.||.= +.......+-+.|-|..|+.
T Consensus 366 aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~p-eeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~ 444 (2195)
T KOG2122|consen 366 ALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAP-EELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAA 444 (2195)
T ss_pred HHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcCh-HHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHH
Confidence 334444455544333221111134778899999999998653 5888889999999973 23334445668899999986
Q ss_pred HHhcCCcHHHHHHHHHHHHHhhccCcc----hhhhcCchHHHHhhhcc----CChHHHHHHHHHHHHhcc----CCCCch
Q 000326 107 RLLTIEYMDLAEQSLQALKKISQEHPT----ACLRAGALMAVLSYLDF----FSTGVQRVALSTAANMCK----KLPSDA 174 (1661)
Q Consensus 107 kLL~~~~~dl~Eqal~aL~nIS~~~~~----~Il~~GgL~~LL~lLd~----~~~~vqr~Al~aLsNlc~----~~~~~~ 174 (1661)
--+......-....|.||-||+.++.. .+---|+|..|+.+|.. .+..+...|--+|.|... ..++..
T Consensus 445 ~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQ 524 (2195)
T KOG2122|consen 445 CALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQ 524 (2195)
T ss_pred HHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHH
Confidence 666766666666788899999887764 35567999999999974 345666666666666554 335555
Q ss_pred hHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHH
Q 000326 175 ADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGL 254 (1661)
Q Consensus 175 ~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~a 254 (1661)
+..-..||.+|...|.+..-.||.++|-+|.||... +++..+.|.+.|.++.|.+||.+. ...+....
T Consensus 525 ILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR---~p~DQq~LwD~gAv~mLrnLIhSK---------hkMIa~GS 592 (2195)
T KOG2122|consen 525 ILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR---SPEDQQMLWDDGAVPMLRNLIHSK---------HKMIAMGS 592 (2195)
T ss_pred HHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcC---CHHHHHHHHhcccHHHHHHHHhhh---------hhhhhhhH
Confidence 666678999999999999999999999999999996 999999999999999999999876 34466667
Q ss_pred HHHHHHHhcCC
Q 000326 255 IRLLSTCASGS 265 (1661)
Q Consensus 255 lr~L~nLas~s 265 (1661)
..+|-|+...-
T Consensus 593 aaALrNLln~R 603 (2195)
T KOG2122|consen 593 AAALRNLLNFR 603 (2195)
T ss_pred HHHHHHHhcCC
Confidence 77777776554
No 40
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.28 E-value=4.4e-05 Score=98.52 Aligned_cols=215 Identities=19% Similarity=0.168 Sum_probs=121.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhh
Q 000326 15 KKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAA 94 (1661)
Q Consensus 15 ~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~ 94 (1661)
..+...|++. |+.++-.|++.|+.+-.. + ....++|.+.++|.++ ++.++..|+-|+..+....|+....
T Consensus 82 n~l~kdl~~~-n~~~~~lAL~~l~~i~~~---~-----~~~~l~~~v~~ll~~~-~~~VRk~A~~~l~~i~~~~p~~~~~ 151 (526)
T PF01602_consen 82 NSLQKDLNSP-NPYIRGLALRTLSNIRTP---E-----MAEPLIPDVIKLLSDP-SPYVRKKAALALLKIYRKDPDLVED 151 (526)
T ss_dssp HHHHHHHCSS-SHHHHHHHHHHHHHH-SH---H-----HHHHHHHHHHHHHHSS-SHHHHHHHHHHHHHHHHHCHCCHHG
T ss_pred HHHHHhhcCC-CHHHHHHHHhhhhhhccc---c-----hhhHHHHHHHHHhcCC-chHHHHHHHHHHHHHhccCHHHHHH
Confidence 3344455554 666666666666664421 1 1223566666777655 3677777777777777665543221
Q ss_pred hcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcch--hhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCCC
Q 000326 95 VVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTA--CLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPS 172 (1661)
Q Consensus 95 vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~--Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~ 172 (1661)
. .++.|. +|+...++.+...|+.+|..| ...++. -+-...+..+.+++...++-.|..++.++..++...+.
T Consensus 152 ---~-~~~~l~-~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~ 225 (526)
T PF01602_consen 152 ---E-LIPKLK-QLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPE 225 (526)
T ss_dssp ---G-HHHHHH-HHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHH
T ss_pred ---H-HHHHHh-hhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChh
Confidence 1 466666 666666677777777777777 222221 11122333344444556666777777777766653322
Q ss_pred chhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHH
Q 000326 173 DAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYT 252 (1661)
Q Consensus 173 ~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~ 252 (1661)
.... ..+++.+..+|++.++.|+-.|+.++..+.. .+. .-..+++.|+.+|.+. +.+++.
T Consensus 226 ~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~----~~~-----~~~~~~~~L~~lL~s~---------~~nvr~ 285 (526)
T PF01602_consen 226 DADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSP----SPE-----LLQKAINPLIKLLSSS---------DPNVRY 285 (526)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS----SHH-----HHHHHHHHHHHHHTSS---------SHHHHH
T ss_pred hhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhc----chH-----HHHhhHHHHHHHhhcc---------cchheh
Confidence 2110 4566666666666677777777777766665 222 1123456666777643 456666
Q ss_pred HHHHHHHHHhcCC
Q 000326 253 GLIRLLSTCASGS 265 (1661)
Q Consensus 253 ~alr~L~nLas~s 265 (1661)
.++++|..|+...
T Consensus 286 ~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 286 IALDSLSQLAQSN 298 (526)
T ss_dssp HHHHHHHHHCCHC
T ss_pred hHHHHHHHhhccc
Confidence 7777777776654
No 41
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.26 E-value=9.8e-05 Score=90.83 Aligned_cols=355 Identities=14% Similarity=0.131 Sum_probs=222.4
Q ss_pred cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhccc-----ccHHHHHHHHhcCCcHHHHHHHHHHHHHhhc
Q 000326 55 DSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHY-----GAVTCFVARLLTIEYMDLAEQSLQALKKISQ 129 (1661)
Q Consensus 55 ~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~-----GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~ 129 (1661)
..++..++.+|+.....++.......+.-|+...|.....+++. ....+++ .++..++.-+.+.|+..|..+..
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl-~lL~~~d~~i~~~a~~iLt~l~~ 130 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFF-NLLNRQDQFIVHMSFSILAKLAC 130 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHH-HHHcCCchhHHHHHHHHHHHHHh
Confidence 46799999999987778888777778888888887777776654 4567778 68888888999999999999976
Q ss_pred cCcchhhhcCchHHHH----hhhcc-CChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccC--CHHHHHHHHH
Q 000326 130 EHPTACLRAGALMAVL----SYLDF-FSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYH--DAKVLEHASV 202 (1661)
Q Consensus 130 ~~~~~Il~~GgL~~LL----~lLd~-~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~--D~~v~e~A~~ 202 (1661)
..+... ....+..++ ..|.. .+...+..|+.++.++.+..+....-.-.+.++.|..+|+.. +..++-++|.
T Consensus 131 ~~~~~~-~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll 209 (429)
T cd00256 131 FGLAKM-EGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIF 209 (429)
T ss_pred cCcccc-chhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHH
Confidence 544311 111222233 33333 357788899999999999877765444566899999998753 5678888888
Q ss_pred HHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCC------HHHHHHHHHcC
Q 000326 203 CLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGS------PLCAKTLLHLG 276 (1661)
Q Consensus 203 aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s------~~~t~~Ll~~g 276 (1661)
|+--|+- +++..+.+...++++.+++++.... ...+..-++.+|.|++..+ ......++++|
T Consensus 210 ~lWlLSF----~~~~~~~~~~~~~i~~l~~i~k~s~--------KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~ 277 (429)
T cd00256 210 CIWLLTF----NPHAAEVLKRLSLIQDLSDILKEST--------KEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCK 277 (429)
T ss_pred HHHHHhc----cHHHHHhhccccHHHHHHHHHHhhh--------hHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcC
Confidence 8877776 5556677777899999999998762 5678888899999998753 23456788899
Q ss_pred ChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhcccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCC
Q 000326 277 ISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTN 356 (1661)
Q Consensus 277 il~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 356 (1661)
+++++..|... .|+ .+.|.+-++.+.+.|-.-.+..-+..-|...+..|.+.+.++ . +.+
T Consensus 278 l~~~l~~L~~r-----k~~--------DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~-H---~se--- 337 (429)
T cd00256 278 VLKTLQSLEQR-----KYD--------DEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPV-H---KSE--- 337 (429)
T ss_pred hHHHHHHHhcC-----CCC--------cHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCC-C---CCc---
Confidence 88877665543 232 233333333333332222221111122223334466655322 0 000
Q ss_pred CCcchhhhHHHhhccCHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHhhcCCHHHHHHHhhhcchHHHHHHHh
Q 000326 357 GNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVL 436 (1661)
Q Consensus 357 ~~~~~~~~r~~~~~~~~e~~~~f~~~l~p~Li~vy~ss~~~~VR~~~L~~i~r~v~~~~~~~L~~~l~~~~~ss~la~il 436 (1661)
.=..++..|.+ .++= .++-.|+++...+-++.+=-=++.=|--.|.+.. .-+.++.....-..+..++
T Consensus 338 ~FW~EN~~kf~--~~~~--------~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P--~gr~i~~~lg~K~~vM~Lm 405 (429)
T cd00256 338 KFWRENADRLN--EKNY--------ELLKILIHLLETSVDPIILAVACHDIGEYVRHYP--RGKDVVEQLGGKQRVMRLL 405 (429)
T ss_pred hHHHHHHHHHH--hcch--------HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCc--cHHHHHHHcCcHHHHHHHh
Confidence 00123333321 1222 4455556665555555322222222222332221 1122333344556677788
Q ss_pred hcCCCchHHhHHHHHHHHH
Q 000326 437 AWKDPHVLIPSLQIAEILM 455 (1661)
Q Consensus 437 ~~~d~~l~~~aL~i~~~Ll 455 (1661)
+.+|+.+--.||+++..||
T Consensus 406 ~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 406 NHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 8999999999999999887
No 42
>PTZ00429 beta-adaptin; Provisional
Probab=98.23 E-value=0.0004 Score=91.46 Aligned_cols=306 Identities=14% Similarity=0.080 Sum_probs=208.5
Q ss_pred ccCcHHHHHHhhcCCCCHHHHHHHH-HHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCc
Q 000326 54 VDSFAPVLVGLLNHESNPDIMLLAA-RALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHP 132 (1661)
Q Consensus 54 ~~g~vp~Lv~lL~~~~~~eiq~~A~-raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~ 132 (1661)
..|=+..|-+.|++.+ ..-+.+|. ++|++|+.|.. ... ..+-.+ +++.+.+.+++.-+--.|.+++...+
T Consensus 30 ~kge~~ELr~~L~s~~-~~~kk~alKkvIa~mt~G~D-vS~------LF~dVv-k~~~S~d~elKKLvYLYL~~ya~~~p 100 (746)
T PTZ00429 30 RRGEGAELQNDLNGTD-SYRKKAAVKRIIANMTMGRD-VSY------LFVDVV-KLAPSTDLELKKLVYLYVLSTARLQP 100 (746)
T ss_pred ccchHHHHHHHHHCCC-HHHHHHHHHHHHHHHHCCCC-chH------HHHHHH-HHhCCCCHHHHHHHHHHHHHHcccCh
Confidence 3556777888887664 44445554 56777777642 222 455666 78899999999999999999998777
Q ss_pred c-hhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhc
Q 000326 133 T-ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAF 211 (1661)
Q Consensus 133 ~-~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~ 211 (1661)
+ +++- +..+.+=+.+.++.++-.|+.+++++.. ..++..+++.|.+.|.+.++-|...|+.|+.+|-..
T Consensus 101 elalLa---INtl~KDl~d~Np~IRaLALRtLs~Ir~------~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~- 170 (746)
T PTZ00429 101 EKALLA---VNTFLQDTTNSSPVVRALAVRTMMCIRV------SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHD- 170 (746)
T ss_pred HHHHHH---HHHHHHHcCCCCHHHHHHHHHHHHcCCc------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-
Confidence 6 4443 4455666667788899999999998753 245677888999999999999999999999999774
Q ss_pred CCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcc
Q 000326 212 ASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVS 291 (1661)
Q Consensus 212 ~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~ 291 (1661)
+++ .+.+.|+++.|.++|... ++.++..|+.+|..|+..++.... +..+.+..|+..|...
T Consensus 171 --~pe---lv~~~~~~~~L~~LL~D~---------dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~--- 231 (746)
T PTZ00429 171 --DMQ---LFYQQDFKKDLVELLNDN---------NPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPEC--- 231 (746)
T ss_pred --Ccc---cccccchHHHHHHHhcCC---------CccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcC---
Confidence 553 334668899999998765 577999999999999876654321 2223333344444332
Q ss_pred cccccccccCCCHHHHHHHHHHhcccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCcchhhhHHHhhcc
Q 000326 292 ANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSD 371 (1661)
Q Consensus 292 ~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 371 (1661)
..|.. + .+++++...-|.
T Consensus 232 ~EW~Q----------i-~IL~lL~~y~P~--------------------------------------------------- 249 (746)
T PTZ00429 232 NEWGQ----------L-YILELLAAQRPS--------------------------------------------------- 249 (746)
T ss_pred ChHHH----------H-HHHHHHHhcCCC---------------------------------------------------
Confidence 23432 2 445543322220
Q ss_pred CHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHhhcCCHHHHHHHhhhcchHHHHHHHhhcCCCchHHhHHHHH
Q 000326 372 QPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIA 451 (1661)
Q Consensus 372 ~~e~~~~f~~~l~p~Li~vy~ss~~~~VR~~~L~~i~r~v~~~~~~~L~~~l~~~~~ss~la~il~~~d~~l~~~aL~i~ 451 (1661)
+.+....++..+.|.| .+.+..|-..|..+++.+..+++++.++.+++. +..-+..+ .++++.+-..+|+.+
T Consensus 250 ~~~e~~~il~~l~~~L-----q~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~r--l~~pLv~L-~ss~~eiqyvaLr~I 321 (746)
T PTZ00429 250 DKESAETLLTRVLPRM-----SHQNPAVVMGAIKVVANLASRCSQELIERCTVR--VNTALLTL-SRRDAETQYIVCKNI 321 (746)
T ss_pred CcHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHH--HHHHHHHh-hCCCccHHHHHHHHH
Confidence 0011234444555543 245789999999999999988877766654432 22222232 457788888999999
Q ss_pred HHHHhhCchhhhhhHH
Q 000326 452 EILMEKLPGTFSKMFV 467 (1661)
Q Consensus 452 ~~Ll~K~pd~f~~~f~ 467 (1661)
..|+++.|.+|.++++
T Consensus 322 ~~i~~~~P~lf~~~~~ 337 (746)
T PTZ00429 322 HALLVIFPNLLRTNLD 337 (746)
T ss_pred HHHHHHCHHHHHHHHH
Confidence 9999999998877643
No 43
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.23 E-value=1.4e-05 Score=96.26 Aligned_cols=219 Identities=18% Similarity=0.220 Sum_probs=163.8
Q ss_pred CcHHHHHHhhcCC-CCHHHHHHHHHHHHHhhccCCcchhhhcc------cccHHHHHHHHhcCCcHHHHHHHHHHHHHhh
Q 000326 56 SFAPVLVGLLNHE-SNPDIMLLAARALTHLCDVLPSSCAAVVH------YGAVTCFVARLLTIEYMDLAEQSLQALKKIS 128 (1661)
Q Consensus 56 g~vp~Lv~lL~~~-~~~eiq~~A~raL~NLa~~~p~~~~~vV~------~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS 128 (1661)
+.+..++.+|+.- ++.+++......|..|+...|.....+.. .....+|+ +++..++.-++++|+..|..|.
T Consensus 55 ~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl-~ll~~~D~~i~~~a~~iLt~Ll 133 (312)
T PF03224_consen 55 QYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFL-KLLDRNDSFIQLKAAFILTSLL 133 (312)
T ss_dssp -------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHH-HH-S-SSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHH-HHhcCCCHHHHHHHHHHHHHHH
Confidence 4577777777765 67899999999999999999977776665 23678899 7999999999999999999998
Q ss_pred ccCcc--hhhhcCchHHHHhhhcc----CChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhh-------ccCCHH
Q 000326 129 QEHPT--ACLRAGALMAVLSYLDF----FSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLL-------QYHDAK 195 (1661)
Q Consensus 129 ~~~~~--~Il~~GgL~~LL~lLd~----~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL-------~~~D~~ 195 (1661)
...+. .-...+.+..++++|.. .+...|..|+.++.++.+.......-.-.+.++.|..+| +..+..
T Consensus 134 ~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q 213 (312)
T PF03224_consen 134 SQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQ 213 (312)
T ss_dssp TSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred HcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence 77664 23236778888888874 345678999999999998776666555578899999999 234578
Q ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHH-HHHHHHH
Q 000326 196 VLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPL-CAKTLLH 274 (1661)
Q Consensus 196 v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~-~t~~Ll~ 274 (1661)
++-+++.|+--|+- +++..+.+...++++.|++++.... ...+..-++.+|.|++..++. ....++.
T Consensus 214 l~Y~~ll~lWlLSF----~~~~~~~~~~~~~i~~L~~i~~~~~--------KEKvvRv~la~l~Nl~~~~~~~~~~~mv~ 281 (312)
T PF03224_consen 214 LQYQALLCLWLLSF----EPEIAEELNKKYLIPLLADILKDSI--------KEKVVRVSLAILRNLLSKAPKSNIELMVL 281 (312)
T ss_dssp HHHHHHHHHHHHTT----SHHHHHHHHTTSHHHHHHHHHHH----------SHHHHHHHHHHHHHTTSSSSTTHHHHHHH
T ss_pred HHHHHHHHHHHHhc----CHHHHHHHhccchHHHHHHHHHhcc--------cchHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 88899999988887 8999999999999999999998763 678999999999999987764 7788999
Q ss_pred cCChHHHHHhhcC
Q 000326 275 LGISGILKDILSG 287 (1661)
Q Consensus 275 ~gil~~L~~LL~~ 287 (1661)
+|+++++..|...
T Consensus 282 ~~~l~~l~~L~~r 294 (312)
T PF03224_consen 282 CGLLKTLQNLSER 294 (312)
T ss_dssp H-HHHHHHHHHSS
T ss_pred ccHHHHHHHHhcC
Confidence 9999988887663
No 44
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=0.00012 Score=86.08 Aligned_cols=190 Identities=19% Similarity=0.171 Sum_probs=150.4
Q ss_pred HHHhh-cCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhc
Q 000326 18 LSGLR-ADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVV 96 (1661)
Q Consensus 18 l~~L~-s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV 96 (1661)
...++ +..++..+..|+..|-.++...++- ..+...|++..|+..|++. +.++...|+|+|+-.+..+|..-..|+
T Consensus 87 ~~~~~~~s~~le~ke~ald~Le~lve~iDnA--ndl~~~ggl~~ll~~l~~~-~~~lR~~Aa~Vigt~~qNNP~~Qe~v~ 163 (342)
T KOG2160|consen 87 IVILNSSSVDLEDKEDALDNLEELVEDIDNA--NDLISLGGLVPLLGYLENS-DAELRELAARVIGTAVQNNPKSQEQVI 163 (342)
T ss_pred hhccCcccCCHHHHHHHHHHHHHHHHhhhhH--HhHhhccCHHHHHHHhcCC-cHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 33444 3458899999999997777765442 3477788888888888876 599999999999999999999999999
Q ss_pred ccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc---hhhhcCchHHHHhhhcc--CChHHHHHHHHHHHHhccCCC
Q 000326 97 HYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYLDF--FSTGVQRVALSTAANMCKKLP 171 (1661)
Q Consensus 97 ~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lLd~--~~~~vqr~Al~aLsNlc~~~~ 171 (1661)
+.|+.+.|+..|-...+..++.+|+.|+..+-+.++. ..+..+|...|...+.. .+...||+++..+.++.....
T Consensus 164 E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~ 243 (342)
T KOG2160|consen 164 ELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK 243 (342)
T ss_pred HcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh
Confidence 9999999995555556678889999999999999885 58889999999999987 678899999999999998654
Q ss_pred CchhHHH-hCcHHHHHHhhccCCHHHHHHHHHHHHHHHhh
Q 000326 172 SDAADFV-MEAVPLLTNLLQYHDAKVLEHASVCLTRIAEA 210 (1661)
Q Consensus 172 ~~~~~~v-~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~ 210 (1661)
...-... ....-.+..+....|..+-+.++.++..+..-
T Consensus 244 s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 244 SDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred hhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 3333333 33444555556677888888888887777764
No 45
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=0.0012 Score=83.40 Aligned_cols=339 Identities=12% Similarity=0.101 Sum_probs=233.0
Q ss_pred ccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhc-CCcHHHHHHHHHHHHHhhccCc
Q 000326 54 VDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLT-IEYMDLAEQSLQALKKISQEHP 132 (1661)
Q Consensus 54 ~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~-~~~~dl~Eqal~aL~nIS~~~~ 132 (1661)
.+..|+.||.-+.+..-++=...|||+|-.++. .++..|.- -++++|++.|-. ..++++...++-+|.++.....
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga-~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd 95 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGA-QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDD 95 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHH-cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc
Confidence 344688888777766667778899999999986 44545544 457888855532 4568999999999999965431
Q ss_pred --------c------------hhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHH---HhCcHHHHHHhh
Q 000326 133 --------T------------ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADF---VMEAVPLLTNLL 189 (1661)
Q Consensus 133 --------~------------~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~---v~~~lp~L~~lL 189 (1661)
. .|...+-|..++.+++.++.++.+.++..++++.+..+..-... ....+..|+.+|
T Consensus 96 ~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL 175 (970)
T KOG0946|consen 96 SPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL 175 (970)
T ss_pred chhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence 1 37778999999999999999999999999999988765443222 235788999999
Q ss_pred ccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHh-CCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHH
Q 000326 190 QYHDAKVLEHASVCLTRIAEAFASSPDKLDELCN-HGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLC 268 (1661)
Q Consensus 190 ~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~-~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~ 268 (1661)
...-.-|..+++..|+.++. +...++.++. .++..+|..++.... + +-.--++..|+..|-||...+...
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k----~n~~IQKlVAFENaFerLfsIIeeEG---g--~dGgIVveDCL~ll~NLLK~N~SN 246 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVK----DNSSIQKLVAFENAFERLFSIIEEEG---G--LDGGIVVEDCLILLNNLLKNNISN 246 (970)
T ss_pred hhhhhhhchhHHHHHHHHHc----cCchHHHHHHHHHHHHHHHHHHHhcC---C--CCCcchHHHHHHHHHHHHhhCcch
Confidence 88888899999999999998 4556666664 479999999998752 1 112247889999999999998888
Q ss_pred HHHHHHcCChHHHHHhhcCCC----cccccccccccCCCHHHHHHH---HHHhcccCCCCCCCCCCCCccccccccCCcc
Q 000326 269 AKTLLHLGISGILKDILSGSG----VSANSAVPPALSRPAEQIFEI---VNLANELLPPLPQGTISLPSSSNMFVKGPVV 341 (1661)
Q Consensus 269 t~~Ll~~gil~~L~~LL~~~~----~~~~~~~s~i~~~~~~qi~~v---i~li~~LLP~L~~~~~~~~~~~~~~~~g~~~ 341 (1661)
.+.+.+.+.++.|..||.-.. ....|+. +-++.+ +..+..|+||=..
T Consensus 247 Q~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~--------Qrv~Nv~~~Lqivr~lVsP~Nt------------------ 300 (970)
T KOG0946|consen 247 QNFFREGSYIPRLLKLLSVFEFGDGEVFGWST--------QRVQNVIEALQIVRSLVSPGNT------------------ 300 (970)
T ss_pred hhHHhccccHHHHHhhcCcccccCcccccccH--------HHHHHHHHHHHHHHHhcCCCCc------------------
Confidence 888999999999999886432 3446653 233333 3334445553111
Q ss_pred cCCCCCCCCCCCCCCCCcchhhhHHHhhccCHHHHHHHHHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHhhcCCH--HH
Q 000326 342 RKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSS-VNSPVRHKCLSVIGKLMYFSSA--EM 418 (1661)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~f~~~l~p~Li~vy~ss-~~~~VR~~~L~~i~r~v~~~~~--~~ 418 (1661)
..... .+. ..-+-..++-+|+.++.++ +-.+|+...+.++..||+-.-- +.
T Consensus 301 ------------------~~~~~------q~q--k~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~ 354 (970)
T KOG0946|consen 301 ------------------SSITH------QNQ--KALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDE 354 (970)
T ss_pred ------------------HHHHH------HHH--HHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHH
Confidence 00000 000 0111247888899998777 9999999999999999975433 33
Q ss_pred HHHHhhh------cchHHHHHHHhhcCC-CchHHhHHHHHHHHHhh
Q 000326 419 IQSLLSV------TNISSFLAGVLAWKD-PHVLIPSLQIAEILMEK 457 (1661)
Q Consensus 419 L~~~l~~------~~~ss~la~il~~~d-~~l~~~aL~i~~~Ll~K 457 (1661)
+..+.-. ..+.-.+.+|.+++- +.+-+.++.+.+..+-+
T Consensus 355 F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~d 400 (970)
T KOG0946|consen 355 FADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYD 400 (970)
T ss_pred HhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhc
Confidence 3333211 123344445555444 45555566666665544
No 46
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.01 E-value=0.00014 Score=85.76 Aligned_cols=231 Identities=14% Similarity=0.095 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHHHhhccCC---cchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc---hhhhcCchHHH
Q 000326 71 PDIMLLAARALTHLCDVLP---SSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAV 144 (1661)
Q Consensus 71 ~eiq~~A~raL~NLa~~~p---~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~---~Il~~GgL~~L 144 (1661)
..+...++.|+.-++...- ..+..-+++|++..|. .+..+++.++-+|+..+|+|||-++.. .+.+.||-..+
T Consensus 56 ~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lr-q~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqiv 134 (604)
T KOG4500|consen 56 DTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLR-QTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIV 134 (604)
T ss_pred chhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHH-hCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceeh
Confidence 3455566777777764221 1222347789999999 888999999999999999999988774 79999999999
Q ss_pred HhhhccCC-------hHHHHHHHHHHHHhccCCC-CchhHHHhCcHHHHHHhhc--cCCHHHHHHHHHHHHHHHhhcCCC
Q 000326 145 LSYLDFFS-------TGVQRVALSTAANMCKKLP-SDAADFVMEAVPLLTNLLQ--YHDAKVLEHASVCLTRIAEAFASS 214 (1661)
Q Consensus 145 L~lLd~~~-------~~vqr~Al~aLsNlc~~~~-~~~~~~v~~~lp~L~~lL~--~~D~~v~e~A~~aLs~L~~~~~~~ 214 (1661)
+..|+... ......+...+.|+.-+.. ......-.+++|.|..++. .++...-+..+..+.++..- -
T Consensus 135 id~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~---~ 211 (604)
T KOG4500|consen 135 IDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSF---V 211 (604)
T ss_pred HhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHH---H
Confidence 99987431 2455667778889877543 3334445689999999954 55677778888887777764 3
Q ss_pred HHHHHH-HHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcccc
Q 000326 215 PDKLDE-LCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSAN 293 (1661)
Q Consensus 215 ~e~~~~-li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~ 293 (1661)
.+++.. ..+..+...+++||... +.+.+...++.+|...+.. +.....+.+.|.++.++.++...+.-.
T Consensus 212 ~e~~~~~~~d~sl~~~l~~ll~~~--------v~~d~~eM~feila~~aen-d~Vkl~la~~gl~e~~~~lv~~~k~~t- 281 (604)
T KOG4500|consen 212 CEMLYPFCKDCSLVFMLLQLLPSM--------VREDIDEMIFEILAKAAEN-DLVKLSLAQNGLLEDSIDLVRNMKDFT- 281 (604)
T ss_pred HHhhhhhhccchHHHHHHHHHHHh--------hccchhhHHHHHHHHHhcC-cceeeehhhcchHHHHHHHHHhccccc-
Confidence 343433 44678999999999654 4677888888888887755 555677889999999999998765421
Q ss_pred cccccccCCCHHHHHHHHHHhcccCCCCCCC
Q 000326 294 SAVPPALSRPAEQIFEIVNLANELLPPLPQG 324 (1661)
Q Consensus 294 ~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~ 324 (1661)
.+..-...+..+++++-.|..|
T Consensus 282 ---------~k~d~~~l~k~~~el~vllltG 303 (604)
T KOG4500|consen 282 ---------KKTDMLNLFKRIAELDVLLLTG 303 (604)
T ss_pred ---------chHHHHHHHHhhhhHhhhhhcC
Confidence 2233344455566666655544
No 47
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.0028 Score=83.75 Aligned_cols=436 Identities=15% Similarity=0.150 Sum_probs=261.2
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc-
Q 000326 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS- 91 (1661)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~- 91 (1661)
-++.|..-++...||..+--|+..+|+++..- =..+..=....+-..|+.++..+..+.+...-|+++.-|+...-..
T Consensus 37 ~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~-w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~ 115 (1075)
T KOG2171|consen 37 LLPALAHILATSADPQVRQLAAVLLRKLLTKH-WSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEK 115 (1075)
T ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccc
Confidence 34555666666668888888888999988862 1122222233456677788888878889999999999988753222
Q ss_pred hhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhh--cCchHHHHhhhccCChHHHHHHHHHHHHhccC
Q 000326 92 CAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLR--AGALMAVLSYLDFFSTGVQRVALSTAANMCKK 169 (1661)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~--~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~ 169 (1661)
+. +.++.|. .-..++++.++|-|+..|..+...-++.... ...+..+.+-+...+..+.-.|+.++..+...
T Consensus 116 WP-----ell~~L~-q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~ 189 (1075)
T KOG2171|consen 116 WP-----ELLQFLF-QSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEY 189 (1075)
T ss_pred hH-----HHHHHHH-HHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHH
Confidence 21 3566666 6778899999999999999998765542110 01223333444455555777788888887774
Q ss_pred CC--CchhHHHhCcHHHHHHh----hccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCC
Q 000326 170 LP--SDAADFVMEAVPLLTNL----LQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQ 243 (1661)
Q Consensus 170 ~~--~~~~~~v~~~lp~L~~l----L~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~ 243 (1661)
.+ ..........+|.+.+. ++..|.+....++.+|.-++.. .+..+...+. .+++-..++..+.+
T Consensus 190 ~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~---~pk~l~~~l~-~ii~~~l~Ia~n~~----- 260 (1075)
T KOG2171|consen 190 LENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLES---EPKLLRPHLS-QIIQFSLEIAKNKE----- 260 (1075)
T ss_pred hccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhh---chHHHHHHHH-HHHHHHHHHhhccc-----
Confidence 43 55566677888876666 4567888889999999999986 6666655553 35666666665553
Q ss_pred CCCChhHHHHHHHHHHHHhcCCHHHHHHH--HHcCChHHHHHhhcCCCcccccccccc-----cCCCHHHHHHHHHHhc-
Q 000326 244 ASLSTPTYTGLIRLLSTCASGSPLCAKTL--LHLGISGILKDILSGSGVSANSAVPPA-----LSRPAEQIFEIVNLAN- 315 (1661)
Q Consensus 244 ~~~s~~i~~~alr~L~nLas~s~~~t~~L--l~~gil~~L~~LL~~~~~~~~~~~s~i-----~~~~~~qi~~vi~li~- 315 (1661)
++..+...||.+|..++..-+.-.+.. +-.-+++.+..+++.......|.-+.. -..|...-.++++.++
T Consensus 261 --l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~ 338 (1075)
T KOG2171|consen 261 --LENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLAL 338 (1075)
T ss_pred --ccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHh
Confidence 678899999999999887744333222 223455566666654433334432211 0123333444555322
Q ss_pred c-----cCCCCCCCCCCCCcccccccc------------CC-------cccC----CCCCCCCCCCCCCCCcchhhhHHH
Q 000326 316 E-----LLPPLPQGTISLPSSSNMFVK------------GP-------VVRK----SPASSSGKQDDTNGNASEVSAREK 367 (1661)
Q Consensus 316 ~-----LLP~L~~~~~~~~~~~~~~~~------------g~-------~~~~----~~~~~~~~~~~~~~~~~~~~~r~~ 367 (1661)
+ ++|++.+-+..+-...+|..| |. +.+- -+.. +.+..+-|-.
T Consensus 339 ~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l----------~DphprVr~A 408 (1075)
T KOG2171|consen 339 HLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGL----------NDPHPRVRYA 408 (1075)
T ss_pred cCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhc----------CCCCHHHHHH
Confidence 2 223222210000011122221 11 0000 0000 0112233333
Q ss_pred hhcc--------CHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHhhcCCHHHHHHHhhhcchHHHHHHHhhcC
Q 000326 368 LLSD--------QPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWK 439 (1661)
Q Consensus 368 ~~~~--------~~e~~~~f~~~l~p~Li~vy~ss~~~~VR~~~L~~i~r~v~~~~~~~L~~~l~~~~~ss~la~il~~~ 439 (1661)
-|.. .|+.-+.+=..+.|.|+....++-+..|...+-.++.+...+++.+.|...+.... ...-.+|-++
T Consensus 409 A~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm--~~~l~~L~~~ 486 (1075)
T KOG2171|consen 409 ALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLM--EKKLLLLLQS 486 (1075)
T ss_pred HHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH--HHHHHHHhcC
Confidence 3311 35555555568888999999999999999999999999999999988885443211 1012223333
Q ss_pred C-CchHHhHHHHHHHHHhhCchhhhhhHHhhcHHHHHHHHHh
Q 000326 440 D-PHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLIL 480 (1661)
Q Consensus 440 d-~~l~~~aL~i~~~Ll~K~pd~f~~~f~REGV~~~I~~L~~ 480 (1661)
+ +.+.-.|+..+-..-.-..+-|.++|.| +|+.++++..
T Consensus 487 ~~~~v~e~vvtaIasvA~AA~~~F~pY~d~--~Mp~L~~~L~ 526 (1075)
T KOG2171|consen 487 SKPYVQEQAVTAIASVADAAQEKFIPYFDR--LMPLLKNFLQ 526 (1075)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhHhHHHH--HHHHHHHHHh
Confidence 3 4444455555555555556668888877 5666666654
No 48
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=0.0063 Score=77.06 Aligned_cols=270 Identities=15% Similarity=0.138 Sum_probs=192.5
Q ss_pred cchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcC-CCCHHHHHHHHHHHHHhhccCC
Q 000326 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNH-ESNPDIMLLAARALTHLCDVLP 89 (1661)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~-~~~~eiq~~A~raL~NLa~~~p 89 (1661)
...+++|++.+.+..=++-+..|+..| +-++.. .+.-+....+++|++.|+. -.++++...|.-.++++.....
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgL-Ka~srk----YR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd 95 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGL-KAFSRK----YREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDD 95 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHH-HHHHHH----HHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc
Confidence 347888999986544677777777777 333321 1223445568889999974 3579999999999999986542
Q ss_pred ------cch----------h-hhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc----hhh-hcCchHHHHhh
Q 000326 90 ------SSC----------A-AVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT----ACL-RAGALMAVLSY 147 (1661)
Q Consensus 90 ------~~~----------~-~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~----~Il-~~GgL~~LL~l 147 (1661)
+.+ . .+-..+-|..|+ ..++..+.-|+..+++.|.+|-..-+. .|+ .--||..++.+
T Consensus 96 ~~~v~dds~qsdd~g~~iae~fik~qd~I~lll-~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdl 174 (970)
T KOG0946|consen 96 SPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLL-QSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDL 174 (970)
T ss_pred chhhcccchhhhHHHHHHHHHHHcCchhHHHHH-HHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHH
Confidence 222 1 133557788888 788889999999999999999665553 343 34699999999
Q ss_pred hccCChHHHHHHHHHHHHhccCCCCch-hHHHhCcHHHHHHhhccC---C-HHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q 000326 148 LDFFSTGVQRVALSTAANMCKKLPSDA-ADFVMEAVPLLTNLLQYH---D-AKVLEHASVCLTRIAEAFASSPDKLDELC 222 (1661)
Q Consensus 148 Ld~~~~~vqr~Al~aLsNlc~~~~~~~-~~~v~~~lp~L~~lL~~~---D-~~v~e~A~~aLs~L~~~~~~~~e~~~~li 222 (1661)
|+...-.+.-.++-.++-+.+..+... .....+++..|..++..+ | .-|+++|+..+-+|... +..+.+.+.
T Consensus 175 L~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~---N~SNQ~~Fr 251 (970)
T KOG0946|consen 175 LRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKN---NISNQNFFR 251 (970)
T ss_pred HhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhh---CcchhhHHh
Confidence 987655555568888888888765544 444578999999998754 3 47889999999999986 777888888
Q ss_pred hCCcHHHHHHhhccCCCCC----CCCCCChhHHHHHHHHHHHHhcCC-----HHHHH-HHHHcCChHHHHHhhcCCC
Q 000326 223 NHGLVTQAATLISTSNSGG----GQASLSTPTYTGLIRLLSTCASGS-----PLCAK-TLLHLGISGILKDILSGSG 289 (1661)
Q Consensus 223 ~~gll~~Lv~LL~~~~~~~----~~~~~s~~i~~~alr~L~nLas~s-----~~~t~-~Ll~~gil~~L~~LL~~~~ 289 (1661)
+.+.+++|..||....... +|..--...+..+|.++..+++-. ..+.+ .+..++++..|+.+|.+..
T Consensus 252 E~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~ 328 (970)
T KOG0946|consen 252 EGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPG 328 (970)
T ss_pred ccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCC
Confidence 8899999999997542111 232222334566777777777532 23333 4555999999999999875
No 49
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.00074 Score=79.74 Aligned_cols=178 Identities=16% Similarity=0.195 Sum_probs=138.8
Q ss_pred CHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc---hhhhcCchHHHHh
Q 000326 70 NPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLS 146 (1661)
Q Consensus 70 ~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~ 146 (1661)
+++=+..|.--|-.+++.. ++...++..|...+++ .+++..+..|++-|+|+|+.+++.+|. .|++.|++..|+.
T Consensus 96 ~le~ke~ald~Le~lve~i-DnAndl~~~ggl~~ll-~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDI-DNANDLISLGGLVPLL-GYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred CHHHHHHHHHHHHHHHHhh-hhHHhHhhccCHHHHH-HHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 4666667777777777654 5777899999999999 699999999999999999999999996 6999999999999
Q ss_pred hhcc-CChHHHHHHHHHHHHhccCCCCchhH-HHhCcHHHHHHhhcc--CCHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q 000326 147 YLDF-FSTGVQRVALSTAANMCKKLPSDAAD-FVMEAVPLLTNLLQY--HDAKVLEHASVCLTRIAEAFASSPDKLDELC 222 (1661)
Q Consensus 147 lLd~-~~~~vqr~Al~aLsNlc~~~~~~~~~-~v~~~lp~L~~lL~~--~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li 222 (1661)
.|.. .+.++..+|+.+++++.|+.++-... ........|..+|+. .+.+.+..|+..+++|... +....+.+.
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~---~~s~~d~~~ 250 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQE---DKSDEDIAS 250 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh---hhhhhhHHH
Confidence 9985 45678889999999999977543322 334568999999998 6789999999999999997 555555555
Q ss_pred hCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHH
Q 000326 223 NHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTC 261 (1661)
Q Consensus 223 ~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nL 261 (1661)
..+....++.+...- ...+...++.++..+
T Consensus 251 ~~~f~~~~~~l~~~l---------~~~~~e~~l~~~l~~ 280 (342)
T KOG2160|consen 251 SLGFQRVLENLISSL---------DFEVNEAALTALLSL 280 (342)
T ss_pred HhhhhHHHHHHhhcc---------chhhhHHHHHHHHHH
Confidence 556666666666554 345566666555444
No 50
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.90 E-value=0.0023 Score=79.96 Aligned_cols=239 Identities=16% Similarity=0.120 Sum_probs=171.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCC-CHHHHHHHHHHHHHhhccCCcchh
Q 000326 15 KKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHES-NPDIMLLAARALTHLCDVLPSSCA 93 (1661)
Q Consensus 15 ~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~-~~eiq~~A~raL~NLa~~~p~~~~ 93 (1661)
-.++..|... ||+..+.|+...++++..- .+.-..++..|.+|.|+.+++.++ .++++.+.+-++...+.+......
T Consensus 12 ~~~l~~L~~~-dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~ 89 (678)
T KOG1293|consen 12 LDLLYRLLHL-DPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVD 89 (678)
T ss_pred HHHHHhhhcC-CHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHH
Confidence 3455666665 8899999999998777754 344457889999999999998664 467776666677777788888888
Q ss_pred hhcccccHHHHHHHHhcCCc-HHHHHHHHHHHHHhhccCc--chhh---hcCchHHHHhhhccCChHHHHHHHHHHHHhc
Q 000326 94 AVVHYGAVTCFVARLLTIEY-MDLAEQSLQALKKISQEHP--TACL---RAGALMAVLSYLDFFSTGVQRVALSTAANMC 167 (1661)
Q Consensus 94 ~vV~~GaVp~Lv~kLL~~~~-~dl~Eqal~aL~nIS~~~~--~~Il---~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc 167 (1661)
.+++++.+|.|. .|+...+ ..+.+-++.+|.+|-.-.+ ..+. ....+..+-.++......+++.-+..++++|
T Consensus 90 svL~~~~ll~Ll-~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s 168 (678)
T KOG1293|consen 90 SVLRIIELLKLL-QLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLS 168 (678)
T ss_pred HHHHHhhHHHHH-HHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccc
Confidence 999999999999 7777776 8999999999999965433 1111 2222333322323244556777788888899
Q ss_pred cCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHH----HHHHHHhCCcHHH--HHHhhccCCCCC
Q 000326 168 KKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPD----KLDELCNHGLVTQ--AATLISTSNSGG 241 (1661)
Q Consensus 168 ~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e----~~~~li~~gll~~--Lv~LL~~~~~~~ 241 (1661)
....+.....-.++...+.-++.+-..++...|+.|++|-+.-...++. .+..+.+.|+.++ +.+|+...
T Consensus 169 ~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~---- 244 (678)
T KOG1293|consen 169 STKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDP---- 244 (678)
T ss_pred ccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCC----
Confidence 8776666666678888888888888889999999999942222222444 4455556788874 55555554
Q ss_pred CCCCCChhHHHHHHHHHHHHhcCC
Q 000326 242 GQASLSTPTYTGLIRLLSTCASGS 265 (1661)
Q Consensus 242 ~~~~~s~~i~~~alr~L~nLas~s 265 (1661)
..+.+...+.+|.+++.++
T Consensus 245 -----~~s~~l~sl~cl~~~~~~s 263 (678)
T KOG1293|consen 245 -----DFSERLRSLECLVPYLRKS 263 (678)
T ss_pred -----CccHHHHHHHHHHHHHhcc
Confidence 3446688888888888877
No 51
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=97.87 E-value=0.0057 Score=72.77 Aligned_cols=387 Identities=13% Similarity=0.082 Sum_probs=243.8
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhc---CCC---CHHHHHHHHHHHHHhhccCCcc
Q 000326 18 LSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLN---HES---NPDIMLLAARALTHLCDVLPSS 91 (1661)
Q Consensus 18 l~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~---~~~---~~eiq~~A~raL~NLa~~~p~~ 91 (1661)
.+-..|+ |-.+..+..++|.++....++ ....|...|.-..++.+|+ +.+ +.+.-..++..|.|..-++.+.
T Consensus 93 rq~psS~-d~ev~~Q~~RaLgNiCydn~E-~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l 170 (604)
T KOG4500|consen 93 RQTPSSP-DTEVHEQCFRALGNICYDNNE-NRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSREL 170 (604)
T ss_pred HhCCCCC-cccHHHHHHHHHhhhhccCch-hHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHH
Confidence 3334555 788999999999988876654 3356667776666666665 333 3455668888999999999888
Q ss_pred hhhhcccccHHHHHHHHhcCCc--HHHHHHHHHHHHHhhccCc----chhhhcCchHHHHhhhcc-CChHHHHHHHHHHH
Q 000326 92 CAAVVHYGAVTCFVARLLTIEY--MDLAEQSLQALKKISQEHP----TACLRAGALMAVLSYLDF-FSTGVQRVALSTAA 164 (1661)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~--~dl~Eqal~aL~nIS~~~~----~~Il~~GgL~~LL~lLd~-~~~~vqr~Al~aLs 164 (1661)
...+++.|++|.|. .++.+.. ..+.|.++-...|+..--. ....+......++++|.. ....+-..+..+++
T Consensus 171 ~aq~~~~gVl~tL~-~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila 249 (604)
T KOG4500|consen 171 RAQVADAGVLNTLA-ITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILA 249 (604)
T ss_pred HHHHHhcccHHHHH-HHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHH
Confidence 89999999999999 8877764 5777888887777753211 234455556667777753 34455555666777
Q ss_pred HhccCCCCchhHHHhCcHHHHHHhhcc-CCHHHHHHHHHHHHHHHhh---cCCCHHHHHHHHhCC-cHHHHHHhhccCCC
Q 000326 165 NMCKKLPSDAADFVMEAVPLLTNLLQY-HDAKVLEHASVCLTRIAEA---FASSPDKLDELCNHG-LVTQAATLISTSNS 239 (1661)
Q Consensus 165 Nlc~~~~~~~~~~v~~~lp~L~~lL~~-~D~~v~e~A~~aLs~L~~~---~~~~~e~~~~li~~g-ll~~Lv~LL~~~~~ 239 (1661)
..+.+..-.-...-.+.+..+.++++. .+-.-.+++..-+-++++- .-..++..+.+...+ +++.++.-+.+.
T Consensus 250 ~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~-- 327 (604)
T KOG4500|consen 250 KAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSD-- 327 (604)
T ss_pred HHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCC--
Confidence 666544322222233456666666654 3333333333333333321 011355667777666 999999999876
Q ss_pred CCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhcccCC
Q 000326 240 GGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLP 319 (1661)
Q Consensus 240 ~~~~~~~s~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP 319 (1661)
+.+.++...-+|+|+++.++. ..++++.++++.|..+|...+.+ .|+-+..++++.-+.+|+-
T Consensus 328 -------d~~l~t~g~LaigNfaR~D~~-ci~~v~~~~~nkL~~~l~~~~~v---------dgnV~~qhA~lsALRnl~I 390 (604)
T KOG4500|consen 328 -------DSNLITMGSLAIGNFARRDDI-CIQLVQKDFLNKLISCLMQEKDV---------DGNVERQHACLSALRNLMI 390 (604)
T ss_pred -------chhHHHHHHHHHHhhhccchH-HHHHHHHHHHHHHHHHHHHhcCC---------CccchhHHHHHHHHHhccc
Confidence 466889999999999998655 46689999999999999764421 2333444455543444544
Q ss_pred CCCC-CCCCCCccccccccCCcccCCCCCCCCCCCCCCCCcchhhhHHHhhccCHHHHHHHHHHHHHHHHHHHhccCChH
Q 000326 320 PLPQ-GTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSP 398 (1661)
Q Consensus 320 ~L~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~f~~~l~p~Li~vy~ss~~~~ 398 (1661)
|.+. ..+- | .... .-++|.| ....+.
T Consensus 391 Pv~nka~~~-~-------------------------------------------aGvt----eaIL~~l-----k~~~pp 417 (604)
T KOG4500|consen 391 PVSNKAHFA-P-------------------------------------------AGVT----EAILLQL-----KLASPP 417 (604)
T ss_pred cCCchhhcc-c-------------------------------------------cchH----HHHHHHH-----HhcCCc
Confidence 4333 1110 0 0011 1122221 233333
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHhhhcchHHHHHHHhhcCCCchHHh-HHHHHHHHH--hhCchhhhhhHHhhcHHHHH
Q 000326 399 VRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIP-SLQIAEILM--EKLPGTFSKMFVREGVVHAV 475 (1661)
Q Consensus 399 VR~~~L~~i~r~v~~~~~~~L~~~l~~~~~ss~la~il~~~d~~l~~~-aL~i~~~Ll--~K~pd~f~~~f~REGV~~~I 475 (1661)
|-.+-| .-+||+--+.+-...++.++.-.-.-|..+=.++|...|++ .+.+..-|. .|+.|+....-+.-||-+.|
T Consensus 418 v~fkll-gTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~V 496 (604)
T KOG4500|consen 418 VTFKLL-GTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKV 496 (604)
T ss_pred chHHHH-HHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHH
Confidence 444544 34678877777788888899888888887777788665553 444444444 45777777766677777777
Q ss_pred HHHHh
Q 000326 476 DQLIL 480 (1661)
Q Consensus 476 ~~L~~ 480 (1661)
..+..
T Consensus 497 sm~t~ 501 (604)
T KOG4500|consen 497 SMFTK 501 (604)
T ss_pred HHHHH
Confidence 76654
No 52
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=0.0045 Score=78.28 Aligned_cols=408 Identities=15% Similarity=0.135 Sum_probs=232.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhh
Q 000326 15 KKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAA 94 (1661)
Q Consensus 15 ~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~ 94 (1661)
+-+=+++++. |...+-.|+.++.-++..-.+..+. -.+.+.+|.++.+|.++ +..+...++|+|+-|++..|+.+..
T Consensus 367 ~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~~Lt-~iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l~e~~~n 443 (859)
T KOG1241|consen 367 PFIEENIQNP-DWRNREAAVMAFGSILEGPEPDKLT-PIVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFLPEAIIN 443 (859)
T ss_pred HHHHHhcCCc-chhhhhHHHHHHHhhhcCCchhhhh-HHHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhchhhccc
Confidence 3334478776 8899999999999998876555543 34667899999999955 4667789999999999999977765
Q ss_pred hc-ccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcC-----------chHHHHhhhc---cCChHHHHHH
Q 000326 95 VV-HYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAG-----------ALMAVLSYLD---FFSTGVQRVA 159 (1661)
Q Consensus 95 vV-~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~G-----------gL~~LL~lLd---~~~~~vqr~A 159 (1661)
.+ -.+.++.|++-| .+++.++..|.|++.+++....+.....| .|..||..-+ -...+....|
T Consensus 444 ~~~l~~~l~~l~~gL--~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AA 521 (859)
T KOG1241|consen 444 QELLQSKLSALLEGL--NDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAA 521 (859)
T ss_pred HhhhhHHHHHHHHHh--hhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHH
Confidence 43 456677777555 45689999999999999865443322221 2222232222 2334455556
Q ss_pred HHHHHHhccCCCCchhHHHhCcHHHHHH---------hhccCC----HHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCc
Q 000326 160 LSTAANMCKKLPSDAADFVMEAVPLLTN---------LLQYHD----AKVLEHASVCLTRIAEAFASSPDKLDELCNHGL 226 (1661)
Q Consensus 160 l~aLsNlc~~~~~~~~~~v~~~lp~L~~---------lL~~~D----~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gl 226 (1661)
-.+|.-+.++.+......+.+..+.+.. .|.+.| .++....|.+|..+...+.+ .+..+.+ .+
T Consensus 522 YeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~---~~~~~~d-~i 597 (859)
T KOG1241|consen 522 YEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGS---DIREVSD-QI 597 (859)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccc---cchhHHH-HH
Confidence 7788888887777777777776665555 455555 35677788888888876433 3333333 25
Q ss_pred HHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCC-HHHHHHHHHcCChHHHHHhhcCCCc-ccccccccccCCCH
Q 000326 227 VTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGS-PLCAKTLLHLGISGILKDILSGSGV-SANSAVPPALSRPA 304 (1661)
Q Consensus 227 l~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s-~~~t~~Ll~~gil~~L~~LL~~~~~-~~~~~~s~i~~~~~ 304 (1661)
+.-+++++.... +.-+...++-+++.++..= ..-.+++ .-+.|.|..=|++... ..|.++..++..=.
T Consensus 598 M~lflri~~s~~--------s~~v~e~a~laV~tl~~~Lg~~F~kym--~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~ 667 (859)
T KOG1241|consen 598 MGLFLRIFESKR--------SAVVHEEAFLAVSTLAESLGKGFAKYM--PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLA 667 (859)
T ss_pred HHHHHHHHcCCc--------cccchHHHHHHHHHHHHHHhHhHHHHH--HHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 667778887643 4557788888888777531 2211111 2244555555544432 11222111100000
Q ss_pred HHHH-HHHHHhcccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCcchhhhHHHhh----ccCHHHHHHH
Q 000326 305 EQIF-EIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLL----SDQPELLQQF 379 (1661)
Q Consensus 305 ~qi~-~vi~li~~LLP~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~----~~~~e~~~~f 379 (1661)
.-+. .++-+..+++-.|....-+ +..++ + -++. -.... -..-..+..|
T Consensus 668 raL~~~i~py~d~~mt~Lvq~Lss-~~~hR-------------------~----vKP~---IlS~FgDIAlaIg~~F~~Y 720 (859)
T KOG1241|consen 668 RALEDDILPYCDELMTVLVQCLSS-PNLHR-------------------N----VKPA---ILSVFGDIALAIGADFEPY 720 (859)
T ss_pred HHHHhhhhhHHHHHHHHHHHHccC-ccccc-------------------c----ccch---HHHHHHHHHHHHHHhHHHH
Confidence 0000 0011111111111111100 00000 0 0000 00000 0112346788
Q ss_pred HHHHHHHHHHHHhccCCh----------HHHHHHHHHHHHHhhcCCHHHHHHHhhhcchH----HHHHHHhhcCC--Cch
Q 000326 380 GMDLLPVLIQIYGSSVNS----------PVRHKCLSVIGKLMYFSSAEMIQSLLSVTNIS----SFLAGVLAWKD--PHV 443 (1661)
Q Consensus 380 ~~~l~p~Li~vy~ss~~~----------~VR~~~L~~i~r~v~~~~~~~L~~~l~~~~~s----s~la~il~~~d--~~l 443 (1661)
+..++|+|-++-+.-.+. .+|..||.+.--|+.-.... .+.....++. +||..|-.-+| ..+
T Consensus 721 l~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~--~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~ 798 (859)
T KOG1241|consen 721 LEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTH--ADVMLVQPYVPHIISFIDRIAAEPDVSEAL 798 (859)
T ss_pred HHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcc--cchhhhhcchHHHHHHHHHHhcCcccchHH
Confidence 888999998876443333 57888888877766433210 0111122444 44444433333 356
Q ss_pred HHhHHHHHHHHHhhCchhhhhhHHhhc
Q 000326 444 LIPSLQIAEILMEKLPGTFSKMFVREG 470 (1661)
Q Consensus 444 ~~~aL~i~~~Ll~K~pd~f~~~f~REG 470 (1661)
+-.|+-++--|..-+|+--.+.|.-+-
T Consensus 799 ~~~a~GlIgDL~~~fg~~~~~~~~~~~ 825 (859)
T KOG1241|consen 799 HAAALGLIGDLATMFGKGVIKLFLDED 825 (859)
T ss_pred HHHHHHHHHHHHHHcccchhhhhcchH
Confidence 778999999999998866666665543
No 53
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.80 E-value=0.0011 Score=81.78 Aligned_cols=271 Identities=17% Similarity=0.158 Sum_probs=186.2
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000326 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1661)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~ 91 (1661)
..+..++..|+.+ |..++..|+.-|+.+++.+... .......-++.-|...|+..++.+.+..|++||.+|+... +.
T Consensus 101 ~~~~~fl~lL~~~-d~~i~~~a~~iLt~l~~~~~~~-~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~-~~ 177 (429)
T cd00256 101 KTWEPFFNLLNRQ-DQFIVHMSFSILAKLACFGLAK-MEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVD-EY 177 (429)
T ss_pred cchHHHHHHHcCC-chhHHHHHHHHHHHHHhcCccc-cchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCc-hH
Confidence 4567777777765 8999999999999998865431 1111111244556666766666788889999999999754 67
Q ss_pred hhhhcccccHHHHHHHHhcC-C-cHHHHHHHHHHHHHhhccCcc--hhhhcCchHHHHhhhcc-CChHHHHHHHHHHHHh
Q 000326 92 CAAVVHYGAVTCFVARLLTI-E-YMDLAEQSLQALKKISQEHPT--ACLRAGALMAVLSYLDF-FSTGVQRVALSTAANM 166 (1661)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~-~-~~dl~Eqal~aL~nIS~~~~~--~Il~~GgL~~LL~lLd~-~~~~vqr~Al~aLsNl 166 (1661)
+..+++++.|+.|+ .++.. . ...++-+++-|+--+|-+... ...+.+.++.++.++.. ..-.+.|.++.++.|+
T Consensus 178 R~~f~~~~~v~~L~-~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nl 256 (429)
T cd00256 178 RFAFVLADGVPTLV-KLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNL 256 (429)
T ss_pred HHHHHHccCHHHHH-HHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 78888888999999 56654 2 568888877777777765442 34567899999999975 5678999999999999
Q ss_pred ccCCC----Cc--hhHHHh-CcHHHHHHhh--ccCCHHHHHHHHHHHHHHHhhc----------------------CCC-
Q 000326 167 CKKLP----SD--AADFVM-EAVPLLTNLL--QYHDAKVLEHASVCLTRIAEAF----------------------ASS- 214 (1661)
Q Consensus 167 c~~~~----~~--~~~~v~-~~lp~L~~lL--~~~D~~v~e~A~~aLs~L~~~~----------------------~~~- 214 (1661)
+.... .. ...++. ++++.|..+. ...|+++.++.-..-..|-+.+ .|.
T Consensus 257 l~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~s 336 (429)
T cd00256 257 ISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKS 336 (429)
T ss_pred hhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCC
Confidence 98431 11 123344 4555555553 2468888776554333332221 111
Q ss_pred ----HHHHHHHHhC--CcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCC
Q 000326 215 ----PDKLDELCNH--GLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGS 288 (1661)
Q Consensus 215 ----~e~~~~li~~--gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~ 288 (1661)
.++...+-+. .++..|+++|..++ ++.+..-|+.=||.+++..|.-...+-+.|+=..+++|+++.
T Consensus 337 e~FW~EN~~kf~~~~~~llk~L~~iL~~s~--------d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~ 408 (429)
T cd00256 337 EKFWRENADRLNEKNYELLKILIHLLETSV--------DPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHE 408 (429)
T ss_pred chHHHHHHHHHHhcchHHHHHHHHHHhcCC--------CcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCC
Confidence 2355556544 38899999996542 345566677889999999888777677799999999999987
Q ss_pred Cccccc
Q 000326 289 GVSANS 294 (1661)
Q Consensus 289 ~~~~~~ 294 (1661)
+....+
T Consensus 409 d~~Vr~ 414 (429)
T cd00256 409 DPNVRY 414 (429)
T ss_pred CHHHHH
Confidence 754433
No 54
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.0057 Score=77.41 Aligned_cols=379 Identities=13% Similarity=0.147 Sum_probs=228.8
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhcCCC------ccc-ccccc----------cCcHHHHHHhhcC------CCCHHH
Q 000326 17 ILSGLRADGEEGKQVEALTQLCEMLSIGTE------ESL-STFSV----------DSFAPVLVGLLNH------ESNPDI 73 (1661)
Q Consensus 17 Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~------~~l-~~~~~----------~g~vp~Lv~lL~~------~~~~ei 73 (1661)
-+...+++ +..+.++|+.--|.+...+.+ +.. ...++ ..++|.|+++|.. +++-.+
T Consensus 264 tl~amks~-~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp 342 (859)
T KOG1241|consen 264 TLAAMKSD-NDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNP 342 (859)
T ss_pred HHHHHcCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcH
Confidence 45567776 889999999888765553322 000 12221 2589999999964 123456
Q ss_pred HHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc---hhhhcCchHHHHhhhcc
Q 000326 74 MLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYLDF 150 (1661)
Q Consensus 74 q~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lLd~ 150 (1661)
-..|.-||.-++.. +.+.||. .++ ++++.=+..++-.-+|.|+-|++-|-..... .-+..++++.++.++..
T Consensus 343 ~kAAg~CL~l~A~~---~~D~Iv~-~Vl-~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D 417 (859)
T KOG1241|consen 343 AKAAGVCLMLFAQC---VGDDIVP-HVL-PFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSD 417 (859)
T ss_pred HHHHHHHHHHHHHH---hcccchh-hhH-HHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcC
Confidence 67888888777752 2234444 233 3443556677777788888899888655443 34457899999999998
Q ss_pred CChHHHHHHHHHHHHhccCCCCch--hHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCC-CHHH-HHHHHhCCc
Q 000326 151 FSTGVQRVALSTAANMCKKLPSDA--ADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFAS-SPDK-LDELCNHGL 226 (1661)
Q Consensus 151 ~~~~vqr~Al~aLsNlc~~~~~~~--~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~-~~e~-~~~li~~gl 226 (1661)
.+..+.+.+.|++..+|...+... .......++.|..=| +..+.+..++||++.+|++.... .++. .....+.=.
T Consensus 418 ~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL-~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y 496 (859)
T KOG1241|consen 418 PSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGL-NDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFY 496 (859)
T ss_pred chhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHh-hhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhH
Confidence 888899999999999999776332 222334444444444 35699999999999999976210 0001 000111111
Q ss_pred HHHHHHhhccCCC-CCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHc---CChHHHHHhhcCCCcccccccccc-cC
Q 000326 227 VTQAATLISTSNS-GGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHL---GISGILKDILSGSGVSANSAVPPA-LS 301 (1661)
Q Consensus 227 l~~Lv~LL~~~~~-~~~~~~~s~~i~~~alr~L~nLas~s~~~t~~Ll~~---gil~~L~~LL~~~~~~~~~~~s~i-~~ 301 (1661)
...+-.||...+- .| -..+....+..+|..|...++.-.-.++.. =++..|-+.+. +++ -.
T Consensus 497 ~~ii~~Ll~~tdr~dg----nqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~----------~~~l~~ 562 (859)
T KOG1241|consen 497 EAIIGSLLKVTDRADG----NQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTIS----------SQILSL 562 (859)
T ss_pred HHHHHHHHhhcccccc----chhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH----------HHhccH
Confidence 1222333433320 11 145688899999999998887655443321 12222222222 111 11
Q ss_pred CCHHHHHHHHHHhcccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCcchhhhHHHhhccCHHHHHHHHH
Q 000326 302 RPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGM 381 (1661)
Q Consensus 302 ~~~~qi~~vi~li~~LLP~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~f~~ 381 (1661)
.++.|+.++=.++++.|-.+..-. + + -+.....
T Consensus 563 ~dr~q~~eLQs~Lc~~Lq~i~rk~-------------------~---------------------------~-~~~~~~d 595 (859)
T KOG1241|consen 563 ADRAQLNELQSLLCNTLQSIIRKV-------------------G---------------------------S-DIREVSD 595 (859)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc-------------------c---------------------------c-cchhHHH
Confidence 245666655554444444222100 0 0 1233445
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHhhcCCHHHHHHHhhhcchHHHHHHHh-hcCCCchHHhHHHHHHHHHhhCch
Q 000326 382 DLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVL-AWKDPHVLIPSLQIAEILMEKLPG 460 (1661)
Q Consensus 382 ~l~p~Li~vy~ss~~~~VR~~~L~~i~r~v~~~~~~~L~~~l~~~~~ss~la~il-~~~d~~l~~~aL~i~~~Ll~K~pd 460 (1661)
.|+-+|+.+|.+.-..-|...++-++.-+++.......+-. ..+.-||-.-| +..|..+...|.-++--|..-+.+
T Consensus 596 ~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym---~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~ 672 (859)
T KOG1241|consen 596 QIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYM---PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALED 672 (859)
T ss_pred HHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHH---HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 77888889998855556888999999999887777666633 23344444445 456666777788888888888777
Q ss_pred hhhhhH
Q 000326 461 TFSKMF 466 (1661)
Q Consensus 461 ~f~~~f 466 (1661)
.|.++-
T Consensus 673 ~i~py~ 678 (859)
T KOG1241|consen 673 DILPYC 678 (859)
T ss_pred hhhhHH
Confidence 777653
No 55
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.74 E-value=0.00095 Score=91.41 Aligned_cols=184 Identities=16% Similarity=0.146 Sum_probs=145.5
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000326 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1661)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~ 91 (1661)
..++.|+..|.++ |+.++..|+..|.++- ..++++.|+..|+++ ++++...|+.+|..+.+..+
T Consensus 621 ~~~~~L~~~L~D~-d~~VR~~Av~~L~~~~------------~~~~~~~L~~aL~D~-d~~VR~~Aa~aL~~l~~~~~-- 684 (897)
T PRK13800 621 PSVAELAPYLADP-DPGVRRTAVAVLTETT------------PPGFGPALVAALGDG-AAAVRRAAAEGLRELVEVLP-- 684 (897)
T ss_pred hhHHHHHHHhcCC-CHHHHHHHHHHHhhhc------------chhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhccC--
Confidence 3567888889876 9999999999998642 234689999999766 59999999999998865332
Q ss_pred hhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCC
Q 000326 92 CAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLP 171 (1661)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~ 171 (1661)
..+.|. .+|..+++.++..|+.+|+.+.. +....++.+|...+..++..|+++|..+-
T Consensus 685 --------~~~~L~-~~L~~~d~~VR~~A~~aL~~~~~---------~~~~~l~~~L~D~d~~VR~~Av~aL~~~~---- 742 (897)
T PRK13800 685 --------PAPALR-DHLGSPDPVVRAAALDVLRALRA---------GDAALFAAALGDPDHRVRIEAVRALVSVD---- 742 (897)
T ss_pred --------chHHHH-HHhcCCCHHHHHHHHHHHHhhcc---------CCHHHHHHHhcCCCHHHHHHHHHHHhccc----
Confidence 246777 67788999999999999999853 22346778899999999999999998651
Q ss_pred CchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHH
Q 000326 172 SDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTY 251 (1661)
Q Consensus 172 ~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~ 251 (1661)
..+.|..++..+|..|...++.+|..+... . ...++.|..++... ++.++
T Consensus 743 ---------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~---~---------~~~~~~L~~ll~D~---------d~~VR 792 (897)
T PRK13800 743 ---------DVESVAGAATDENREVRIAVAKGLATLGAG---G---------APAGDAVRALTGDP---------DPLVR 792 (897)
T ss_pred ---------CcHHHHHHhcCCCHHHHHHHHHHHHHhccc---c---------chhHHHHHHHhcCC---------CHHHH
Confidence 124577889999999999999999999763 1 12367788888765 57899
Q ss_pred HHHHHHHHHHhc
Q 000326 252 TGLIRLLSTCAS 263 (1661)
Q Consensus 252 ~~alr~L~nLas 263 (1661)
..++.+|+.+..
T Consensus 793 ~aA~~aLg~~g~ 804 (897)
T PRK13800 793 AAALAALAELGC 804 (897)
T ss_pred HHHHHHHHhcCC
Confidence 999999999854
No 56
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.74 E-value=2.4e-05 Score=64.52 Aligned_cols=40 Identities=25% Similarity=0.369 Sum_probs=36.7
Q ss_pred CcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhc
Q 000326 89 PSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQ 129 (1661)
Q Consensus 89 p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~ 129 (1661)
++++..+++.|+||.|+ +|+.+.+.+++++|+|||+||++
T Consensus 2 ~~~~~~i~~~g~i~~Lv-~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLV-QLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHH-HHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHH-HHHcCCCHHHHHHHHHHHHHHhC
Confidence 56778899999999999 89999999999999999999974
No 57
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.0007 Score=89.15 Aligned_cols=238 Identities=18% Similarity=0.220 Sum_probs=162.9
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchh
Q 000326 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCA 93 (1661)
Q Consensus 14 l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~ 93 (1661)
++.+-..|+|. +...+..|+.+|+-+-..+...... .-..+++..+..|++++ |.++..||-||+-|+...+....
T Consensus 350 ~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~~~m~~--~l~~Il~~Vl~~l~Dph-prVr~AA~naigQ~stdl~p~iq 425 (1075)
T KOG2171|consen 350 FEALEAMLQST-EWKERHAALLALSVIAEGCSDVMIG--NLPKILPIVLNGLNDPH-PRVRYAALNAIGQMSTDLQPEIQ 425 (1075)
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHcccHHHHHH--HHHHHHHHHHhhcCCCC-HHHHHHHHHHHHhhhhhhcHHHH
Confidence 33444456776 9999999999998888777433222 23457888889999886 99999999999999998877776
Q ss_pred hhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhh---cCchHHHHhhh-ccCChHHHHHHHHHHHHhccC
Q 000326 94 AVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLR---AGALMAVLSYL-DFFSTGVQRVALSTAANMCKK 169 (1661)
Q Consensus 94 ~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~---~GgL~~LL~lL-d~~~~~vqr~Al~aLsNlc~~ 169 (1661)
.--..-++|.|+..|-....+.++-.|..||-|.+.++++.++. .+.+.+++.+| ...+..+|..++.+|+..+..
T Consensus 426 k~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~A 505 (1075)
T KOG2171|consen 426 KKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADA 505 (1075)
T ss_pred HHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 66555677788855555667899999999999999999987665 34555444444 466888999999999998874
Q ss_pred CCCchhHHHhCcHHHHHHhhccCC----HHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCC
Q 000326 170 LPSDAADFVMEAVPLLTNLLQYHD----AKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQAS 245 (1661)
Q Consensus 170 ~~~~~~~~v~~~lp~L~~lL~~~D----~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~ 245 (1661)
....=..+..-++|.|.++|++.+ ..+.-++.-|++-|+... ..+.+. +.-..+++++.... ++...
T Consensus 506 A~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AV-----Gke~F~--~~a~eliqll~~~~--~~~~~ 576 (1075)
T KOG2171|consen 506 AQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAV-----GKEKFL--PLAEELIQLLLELQ--GSDQD 576 (1075)
T ss_pred HhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHh-----hhhhhh--HhHHHHHHHHHhhc--ccchh
Confidence 433333445678999999998765 234445556666665431 112222 12333444443321 11222
Q ss_pred CChhHHHHHHHHHHHHhcC
Q 000326 246 LSTPTYTGLIRLLSTCASG 264 (1661)
Q Consensus 246 ~s~~i~~~alr~L~nLas~ 264 (1661)
.+.....-.+...+++|+.
T Consensus 577 ~dd~~~sy~~~~warmc~i 595 (1075)
T KOG2171|consen 577 DDDPLRSYMIAFWARMCRI 595 (1075)
T ss_pred hccccHHHHHHHHHHHHHH
Confidence 3445666677777888864
No 58
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.72 E-value=0.00042 Score=83.54 Aligned_cols=214 Identities=17% Similarity=0.176 Sum_probs=144.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccc------cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCC
Q 000326 16 KILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSV------DSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLP 89 (1661)
Q Consensus 16 ~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~------~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p 89 (1661)
.++..+ + .+..+..-.+.-+.+++..... ....|.. ...+..|+++|..+ +.-++..|+++|+.++...+
T Consensus 62 ~lL~~~-~-~~~d~v~yvL~li~dll~~~~~-~~~~~~~~~~~~~~~~~~~fl~ll~~~-D~~i~~~a~~iLt~Ll~~~~ 137 (312)
T PF03224_consen 62 NLLNKL-S-SNDDTVQYVLTLIDDLLSDDPS-RVELFLELAKQDDSDPYSPFLKLLDRN-DSFIQLKAAFILTSLLSQGP 137 (312)
T ss_dssp HHHHHH-----HHHHHHHHHHHHHHHH-SSS-SHHHHHHHHH-TTH--HHHHHHH-S-S-SHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHc-c-CcHHHHHHHHHHHHHHHhcCHH-HHHHHHHhcccccchhHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCC
Confidence 444445 2 4778888889999998886542 2122221 23678888888876 59999999999999999877
Q ss_pred cchhhhcccccHHHHHHHHhc----CCcHHHHHHHHHHHHHhhccCcc--hhhhcCchHHHHhhh-----cc--CChHHH
Q 000326 90 SSCAAVVHYGAVTCFVARLLT----IEYMDLAEQSLQALKKISQEHPT--ACLRAGALMAVLSYL-----DF--FSTGVQ 156 (1661)
Q Consensus 90 ~~~~~vV~~GaVp~Lv~kLL~----~~~~dl~Eqal~aL~nIS~~~~~--~Il~~GgL~~LL~lL-----d~--~~~~vq 156 (1661)
......+ .++++.++ ..+. ++..+++.-|+++|.++.+...- .+.+.|+++.+..+| .. ....+|
T Consensus 138 ~~~~~~~-~~~l~~ll-~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~ 215 (312)
T PF03224_consen 138 KRSEKLV-KEALPKLL-QWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQ 215 (312)
T ss_dssp T--HHHH-HHHHHHHH-HHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHH
T ss_pred ccccchH-HHHHHHHH-HHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHH
Confidence 6555433 46777777 3433 34466778999999999876553 688899999999999 22 345666
Q ss_pred HHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhcc-CCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhc
Q 000326 157 RVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQY-HDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLIS 235 (1661)
Q Consensus 157 r~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~-~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~ 235 (1661)
-.++-|+.-++...+......-..++|.|+.+++. .-.||+.-++.+|.|+++. ........++..|+++.+..|..
T Consensus 216 Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~--~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 216 YQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSK--APKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSS--SSTTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhc--cHHHHHHHHHHccHHHHHHHHhc
Confidence 67777777777655444444445699999999875 4689999999999999995 22338888999988877777765
Q ss_pred cC
Q 000326 236 TS 237 (1661)
Q Consensus 236 ~~ 237 (1661)
..
T Consensus 294 rk 295 (312)
T PF03224_consen 294 RK 295 (312)
T ss_dssp S-
T ss_pred CC
Confidence 43
No 59
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.70 E-value=0.0014 Score=89.66 Aligned_cols=197 Identities=15% Similarity=0.078 Sum_probs=111.4
Q ss_pred cchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 000326 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPS 90 (1661)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~ 90 (1661)
..-++.|+..|..+ |+.++..|+..|.++..... -.+.|...|+++ ++.++..|+.+|..+-.
T Consensus 651 ~~~~~~L~~aL~D~-d~~VR~~Aa~aL~~l~~~~~-----------~~~~L~~~L~~~-d~~VR~~A~~aL~~~~~---- 713 (897)
T PRK13800 651 PGFGPALVAALGDG-AAAVRRAAAEGLRELVEVLP-----------PAPALRDHLGSP-DPVVRAAALDVLRALRA---- 713 (897)
T ss_pred hhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhccC-----------chHHHHHHhcCC-CHHHHHHHHHHHHhhcc----
Confidence 34567788888665 99999999999987743211 135667777764 57888888777776532
Q ss_pred chhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCC
Q 000326 91 SCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKL 170 (1661)
Q Consensus 91 ~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~ 170 (1661)
+....|+ ++|..++..++..|+++|+.+.. .+.|+.++...+..++..++.+|..+....
T Consensus 714 --------~~~~~l~-~~L~D~d~~VR~~Av~aL~~~~~-----------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~ 773 (897)
T PRK13800 714 --------GDAALFA-AALGDPDHRVRIEAVRALVSVDD-----------VESVAGAATDENREVRIAVAKGLATLGAGG 773 (897)
T ss_pred --------CCHHHHH-HHhcCCCHHHHHHHHHHHhcccC-----------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc
Confidence 1233455 56667777777777777776521 123444455555555555555555543321
Q ss_pred CCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhc----------CC-CHHH----HHHHH---hCCcHHHHHH
Q 000326 171 PSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAF----------AS-SPDK----LDELC---NHGLVTQAAT 232 (1661)
Q Consensus 171 ~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~----------~~-~~e~----~~~li---~~gll~~Lv~ 232 (1661)
...++.|..+++.+|+.|...|+.+|..+...- .. ++.. .+.+. ....++.|+.
T Consensus 774 --------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~ 845 (897)
T PRK13800 774 --------APAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAADVAVPALVE 845 (897)
T ss_pred --------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccccchHHHHHH
Confidence 112444555555555555555555554443210 00 0000 00000 1134577777
Q ss_pred hhccCCCCCCCCCCChhHHHHHHHHHHHH
Q 000326 233 LISTSNSGGGQASLSTPTYTGLIRLLSTC 261 (1661)
Q Consensus 233 LL~~~~~~~~~~~~s~~i~~~alr~L~nL 261 (1661)
+|... +..+...++++|+.+
T Consensus 846 ~L~D~---------~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 846 ALTDP---------HLDVRKAAVLALTRW 865 (897)
T ss_pred HhcCC---------CHHHHHHHHHHHhcc
Confidence 77655 567888888888886
No 60
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.61 E-value=0.0092 Score=74.81 Aligned_cols=205 Identities=17% Similarity=0.182 Sum_probs=156.7
Q ss_pred CHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCc--HHHHHHHHHHHHHhhccCcc---hhhhcCchHHH
Q 000326 70 NPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEY--MDLAEQSLQALKKISQEHPT---ACLRAGALMAV 144 (1661)
Q Consensus 70 ~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~--~dl~Eqal~aL~nIS~~~~~---~Il~~GgL~~L 144 (1661)
+|+....|..-..|.+.+.+.....+++.||+|.|| .|+...+ .++..++..+|+.......+ .+++++.+..+
T Consensus 22 dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll-~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~L 100 (678)
T KOG1293|consen 22 DPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLL-ALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKL 100 (678)
T ss_pred CHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHH-hhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHH
Confidence 377778899999999999999999999999999999 7776654 67776777777777655443 79999999999
Q ss_pred HhhhccCC-hHHHHHHHHHHHHhccCCC---CchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHH
Q 000326 145 LSYLDFFS-TGVQRVALSTAANMCKKLP---SDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDE 220 (1661)
Q Consensus 145 L~lLd~~~-~~vqr~Al~aLsNlc~~~~---~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~ 220 (1661)
+++|+..+ ..+....+.++.++....+ ...+..-..+++.+..++.++-..+...-|.-++.++. ..++.-.
T Consensus 101 l~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~----~~~hq~I 176 (678)
T KOG1293|consen 101 LQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSS----TKDHQLI 176 (678)
T ss_pred HHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccc----cchhhhe
Confidence 99999877 7888888999999887543 34444556678888777775666666666666666665 4577777
Q ss_pred HHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHH---HHhcCCHHHHHHHHH----cCChH--HHHHhhcCC
Q 000326 221 LCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLS---TCASGSPLCAKTLLH----LGISG--ILKDILSGS 288 (1661)
Q Consensus 221 li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~---nLas~s~~~t~~Ll~----~gil~--~L~~LL~~~ 288 (1661)
++++|+++++.-++..- +..++..++.+++ ++...++..+..++. .|+.+ .+.+++...
T Consensus 177 l~Na~i~ekI~~l~~~~---------s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~ 244 (678)
T KOG1293|consen 177 LCNAGILEKINILLMYL---------SSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDP 244 (678)
T ss_pred eccccchhhHHHHHHhh---------hHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCC
Confidence 88999999999988774 5678999999999 887777776655444 67766 445555443
No 61
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.53 E-value=0.016 Score=69.54 Aligned_cols=352 Identities=14% Similarity=0.168 Sum_probs=213.5
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhc------ccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhc
Q 000326 56 SFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVV------HYGAVTCFVARLLTIEYMDLAEQSLQALKKISQ 129 (1661)
Q Consensus 56 g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV------~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~ 129 (1661)
..+..++.||...+..+....+.--+.-|...++.-...+- ..-.=+.++ .||.-++.-+.++..|.|..++.
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl-~ll~r~d~~iv~~~~~Ils~la~ 143 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFL-NLLNRQDTFIVEMSFRILSKLAC 143 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHH-HHHhcCChHHHHHHHHHHHHHHH
Confidence 47889999998776666555544445555544432222211 112345667 78888888899999999999987
Q ss_pred cCcchhhhcCchHHHHhhhc----c-CChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhh--ccCCHHHHHHHHH
Q 000326 130 EHPTACLRAGALMAVLSYLD----F-FSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLL--QYHDAKVLEHASV 202 (1661)
Q Consensus 130 ~~~~~Il~~GgL~~LL~lLd----~-~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL--~~~D~~v~e~A~~ 202 (1661)
-... .+..+.+.-+..+|. . .+......|+.|+--+.+-.+....-...+.+..|+..| ++.+-.++-+.|.
T Consensus 144 ~g~~-~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsif 222 (442)
T KOG2759|consen 144 FGNC-KMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIF 222 (442)
T ss_pred hccc-cccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHH
Confidence 5442 222334444444442 2 345555678888888888666555444556667777776 3447788888999
Q ss_pred HHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCH------HHHHHHHHcC
Q 000326 203 CLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSP------LCAKTLLHLG 276 (1661)
Q Consensus 203 aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~------~~t~~Ll~~g 276 (1661)
|+--|+- ++...+.+...++++.|.+++.++. ...+..-++.++.|++...+ +.+..++.++
T Consensus 223 ciWlLtF----n~~~ae~~~~~~li~~L~~Ivk~~~--------KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~ 290 (442)
T KOG2759|consen 223 CIWLLTF----NPHAAEKLKRFDLIQDLSDIVKEST--------KEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCK 290 (442)
T ss_pred HHHHhhc----CHHHHHHHhhccHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcC
Confidence 9888887 6777788878899999999998762 56677788888899998874 6678899999
Q ss_pred ChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhcccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCC
Q 000326 277 ISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTN 356 (1661)
Q Consensus 277 il~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 356 (1661)
+++++..|... .|+ .+.|.+-|+.+.+-|---.....+.+-|...+..|-+.+.+.. +.+
T Consensus 291 v~k~l~~L~~r-----kys--------DEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~H----k~e--- 350 (442)
T KOG2759|consen 291 VLKTLQSLEER-----KYS--------DEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVH----KSE--- 350 (442)
T ss_pred chHHHHHHHhc-----CCC--------cHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccc----ccc---
Confidence 99999888764 222 1222222222222111111111111112222233544443320 100
Q ss_pred CCcchhhhHHHhhccCHHHHHHHH---HHHHHHHHHHHhccCChHHHHHHHHHHHHHhhcCCHHHHHHHhhhcchHHHHH
Q 000326 357 GNASEVSAREKLLSDQPELLQQFG---MDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLA 433 (1661)
Q Consensus 357 ~~~~~~~~r~~~~~~~~e~~~~f~---~~l~p~Li~vy~ss~~~~VR~~~L~~i~r~v~~~~~~~L~~~l~~~~~ss~la 433 (1661)
.+-.++ +.+|. -.|+-+|+.+..++.++.|=.-++.-|--.|-+... -+.++...---.-+.
T Consensus 351 ----------~FW~eN---a~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~--gk~vv~k~ggKe~vM 415 (442)
T KOG2759|consen 351 ----------KFWREN---ADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPE--GKAVVEKYGGKERVM 415 (442)
T ss_pred ----------chHHHh---HHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCch--HhHHHHHhchHHHHH
Confidence 011111 22222 167777888888888775433333333333333332 122333444456667
Q ss_pred HHhhcCCCchHHhHHHHHHHHHh
Q 000326 434 GVLAWKDPHVLIPSLQIAEILME 456 (1661)
Q Consensus 434 ~il~~~d~~l~~~aL~i~~~Ll~ 456 (1661)
.+++++|+.+-..||+.+..||-
T Consensus 416 ~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 416 NLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHhcCCCchHHHHHHHHHHHHHh
Confidence 78899999999999999999984
No 62
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.0086 Score=71.83 Aligned_cols=231 Identities=18% Similarity=0.140 Sum_probs=147.2
Q ss_pred cccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhcc
Q 000326 51 TFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQE 130 (1661)
Q Consensus 51 ~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~ 130 (1661)
.+....+|..||+.|... +.++-......|..+.-. .++...+++.|+|..|+ +|..++.+|++...+..|-|+|-+
T Consensus 299 KMrrkniV~mLVKaLdr~-n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~-klfp~~h~dL~~~tl~LlfNlSFD 375 (791)
T KOG1222|consen 299 KMRRKNIVAMLVKALDRS-NSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLL-KLFPIQHPDLRKATLMLLFNLSFD 375 (791)
T ss_pred HHHHHhHHHHHHHHHccc-chHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHH-HhcCCCCHHHHHHHHHHhhhcccc
Confidence 466778999999999866 577777777777776654 36888899999999999 999999999999999999999998
Q ss_pred Ccc--hhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHh-hccCCHHHHHHHHHHHHHH
Q 000326 131 HPT--ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNL-LQYHDAKVLEHASVCLTRI 207 (1661)
Q Consensus 131 ~~~--~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~l-L~~~D~~v~e~A~~aLs~L 207 (1661)
... ..+..|-+|.+..+|+..+- ...|+.++..+.-+......-.-.+|+|.|..- +...+.+|-...+..-.||
T Consensus 376 ~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl 453 (791)
T KOG1222|consen 376 SGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINL 453 (791)
T ss_pred ccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHH
Confidence 885 68899999999999986433 234666666666554444444456788888877 4455555443333222355
Q ss_pred HhhcCCC-----HHHHHHH----HhC--CcHHHHHHhhccCCCCCC----------------CCCCChhHHHHHHHHHHH
Q 000326 208 AEAFASS-----PDKLDEL----CNH--GLVTQAATLISTSNSGGG----------------QASLSTPTYTGLIRLLST 260 (1661)
Q Consensus 208 ~~~~~~~-----~e~~~~l----i~~--gll~~Lv~LL~~~~~~~~----------------~~~~s~~i~~~alr~L~n 260 (1661)
|-+-++. ...+..+ +.. -++-++++-++..+ |. ..--+......|+.+|+|
T Consensus 454 ~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHe--g~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlan 531 (791)
T KOG1222|consen 454 CLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHE--GATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLAN 531 (791)
T ss_pred HhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhcc--chHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhh
Confidence 5421000 0111111 111 12223333332221 00 000144556667777777
Q ss_pred HhcCCHHHHHHHHHcCChHHHHHhhcCC
Q 000326 261 CASGSPLCAKTLLHLGISGILKDILSGS 288 (1661)
Q Consensus 261 Las~s~~~t~~Ll~~gil~~L~~LL~~~ 288 (1661)
+.-.+-.-.+.|-+.+++|-+.+.|...
T Consensus 532 L~v~dldw~~ilq~~~LvPw~k~~L~pg 559 (791)
T KOG1222|consen 532 LKVTDLDWAKILQSENLVPWMKTQLQPG 559 (791)
T ss_pred cccCCCCHHHHHhhccccHHHHHhhcCC
Confidence 7665555556566677777777766643
No 63
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.0045 Score=76.97 Aligned_cols=152 Identities=15% Similarity=0.088 Sum_probs=102.3
Q ss_pred cHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcC--chHHHHhhhccCChHHHHHHHHHHHHhccCC-CCchhH
Q 000326 100 AVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAG--ALMAVLSYLDFFSTGVQRVALSTAANMCKKL-PSDAAD 176 (1661)
Q Consensus 100 aVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~G--gL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~-~~~~~~ 176 (1661)
+.|.|- ..|.++.=-++|.++-|||-||..+-+.++..= .++-++.+|+...+-+.+..+|+++....-. ......
T Consensus 394 l~PlLk-~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~ 472 (885)
T KOG2023|consen 394 LLPLLK-EHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDE 472 (885)
T ss_pred HHHHHH-HHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHh
Confidence 345444 677778888999999999999998776544432 5678888999989999999999999988733 222334
Q ss_pred HHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHH
Q 000326 177 FVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIR 256 (1661)
Q Consensus 177 ~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr 256 (1661)
....++..|.+.+-..+++|+|.||.|++-+-+.. .++.+. .++ -++..|+.-+..-. ..+--+.-.|++
T Consensus 473 ~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A--~~eLVp-~l~-~IL~~l~~af~kYQ------~KNLlILYDAIg 542 (885)
T KOG2023|consen 473 YFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEA--GEELVP-YLE-YILDQLVFAFGKYQ------KKNLLILYDAIG 542 (885)
T ss_pred hhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhc--cchhHH-HHH-HHHHHHHHHHHHHh------hcceehHHHHHH
Confidence 55666766777777889999999999999988751 222222 111 23444444443211 113346666777
Q ss_pred HHHHHh
Q 000326 257 LLSTCA 262 (1661)
Q Consensus 257 ~L~nLa 262 (1661)
.|+.-|
T Consensus 543 tlAdsv 548 (885)
T KOG2023|consen 543 TLADSV 548 (885)
T ss_pred HHHHHH
Confidence 777655
No 64
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.36 E-value=0.0013 Score=75.46 Aligned_cols=191 Identities=19% Similarity=0.198 Sum_probs=123.1
Q ss_pred hcCCCHHHHHHHHHHHHHHHhcCC-Cccccccc--ccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhccc
Q 000326 22 RADGEEGKQVEALTQLCEMLSIGT-EESLSTFS--VDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHY 98 (1661)
Q Consensus 22 ~s~~D~~~ql~Al~~L~~lL~~~~-~~~l~~~~--~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~ 98 (1661)
.++.|-..+.+|+..|+.++.... +.....+. ...++..++..+.+. ...+...||.+|..|+..........++
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~- 93 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYAD- 93 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH-
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHH-
Confidence 455699999999999999998761 11111111 124556666666643 4678889999999999877666555543
Q ss_pred ccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCc--chhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCC--Cch
Q 000326 99 GAVTCFVARLLTIEYMDLAEQSLQALKKISQEHP--TACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLP--SDA 174 (1661)
Q Consensus 99 GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~--~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~--~~~ 174 (1661)
..+|.|+ +++.....-+++.|..||..|....+ ..++ +..+...+.+.++.+...++..+..+....+ ...
T Consensus 94 ~~l~~Ll-~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 94 ILLPPLL-KKLGDSKKFIREAANNALDAIIESCSYSPKIL----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHH-HGGG---HHHHHHHHHHHHHHHTTS-H--HHH----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHH-HHHccccHHHHHHHHHHHHHHHHHCCcHHHHH----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 5789999 78888888999999999999988665 1221 4455556677888888889988888888655 222
Q ss_pred hH---HHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q 000326 175 AD---FVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELC 222 (1661)
Q Consensus 175 ~~---~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li 222 (1661)
+. .+..+++.|...+...+++|.+.|-.|+..+... -++....++
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~---~~~~a~~~~ 216 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH---FPERAESIL 216 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH---H-HHH----
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH---CCHhhccch
Confidence 22 2467899999999999999999999999988775 445544444
No 65
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.29 E-value=0.017 Score=69.39 Aligned_cols=267 Identities=17% Similarity=0.170 Sum_probs=188.7
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchh
Q 000326 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCA 93 (1661)
Q Consensus 14 l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~ 93 (1661)
....+..|... |..++-.+.+-++++...++.. +....-+=...-|..+|+..++++-...|+|||--++.. ++.+.
T Consensus 116 ~~~fl~ll~r~-d~~iv~~~~~Ils~la~~g~~~-~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~ 192 (442)
T KOG2759|consen 116 WLSFLNLLNRQ-DTFIVEMSFRILSKLACFGNCK-MELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRY 192 (442)
T ss_pred hHHHHHHHhcC-ChHHHHHHHHHHHHHHHhcccc-ccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhh
Confidence 45566667665 8888887888888888876532 111011113444556677766788888999999998876 47888
Q ss_pred hhcccccHHHHHHHHh-cCCcHHHHHHHHHHHHHhhccCcc--hhhhcCchHHHHhhhcc-CChHHHHHHHHHHHHhccC
Q 000326 94 AVVHYGAVTCFVARLL-TIEYMDLAEQSLQALKKISQEHPT--ACLRAGALMAVLSYLDF-FSTGVQRVALSTAANMCKK 169 (1661)
Q Consensus 94 ~vV~~GaVp~Lv~kLL-~~~~~dl~Eqal~aL~nIS~~~~~--~Il~~GgL~~LL~lLd~-~~~~vqr~Al~aLsNlc~~ 169 (1661)
.+|....+..|+..|. ......++-|.+.|+-.++-..+- .+-.-+.|+.|..++.. ....+.|.++.++.|||.+
T Consensus 193 ~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k 272 (442)
T KOG2759|consen 193 AFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK 272 (442)
T ss_pred eeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8998889999994442 334578888877777777655442 45667888999999985 4678999999999999997
Q ss_pred CCCch------hHHH-hCcHHHHHHhh--ccCCHHHHHHHHHHHHHHHhhc----------------------CCC----
Q 000326 170 LPSDA------ADFV-MEAVPLLTNLL--QYHDAKVLEHASVCLTRIAEAF----------------------ASS---- 214 (1661)
Q Consensus 170 ~~~~~------~~~v-~~~lp~L~~lL--~~~D~~v~e~A~~aLs~L~~~~----------------------~~~---- 214 (1661)
.+... ..++ .++.+.+-.|. .+.|.+++++.-..-..|.+.. .|.
T Consensus 273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~F 352 (442)
T KOG2759|consen 273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKF 352 (442)
T ss_pred CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccch
Confidence 64211 2233 34566666664 3578888877665555444331 000
Q ss_pred -HHHHHHHHhC--CcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcc
Q 000326 215 -PDKLDELCNH--GLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVS 291 (1661)
Q Consensus 215 -~e~~~~li~~--gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~ 291 (1661)
.++...+.+. .++..|+.+|..++ ++.+..-|+.=|+..++..|+-...+.+.|+=..+..||++.++.
T Consensus 353 W~eNa~rlnennyellkiL~~lLe~s~--------Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~ 424 (442)
T KOG2759|consen 353 WRENADRLNENNYELLKILIKLLETSN--------DPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPE 424 (442)
T ss_pred HHHhHHHHhhccHHHHHHHHHHHhcCC--------CCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCch
Confidence 2355566644 59999999998764 455666788889999999999988888899999999999998763
No 66
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.26 E-value=0.0066 Score=74.22 Aligned_cols=411 Identities=15% Similarity=0.158 Sum_probs=226.9
Q ss_pred HHHHHHh-hcCCCHHHHHHHHHHHHHHHhc-CCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch
Q 000326 15 KKILSGL-RADGEEGKQVEALTQLCEMLSI-GTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC 92 (1661)
Q Consensus 15 ~~Ll~~L-~s~~D~~~ql~Al~~L~~lL~~-~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~ 92 (1661)
-.++.+- +.+.+...++.||.+|-+-|-. .++-. ..--..=+....++.-+.+ +.++|..|..||..|+.-.-...
T Consensus 179 ~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~-~E~erNy~mqvvceatq~~-d~e~q~aafgCl~kim~LyY~fm 256 (858)
T COG5215 179 FAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFC-YEEERNYFMQVVCEATQGN-DEELQHAAFGCLNKIMMLYYKFM 256 (858)
T ss_pred HHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhc-chhhhchhheeeehhccCC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 3444678899999888773321 11100 0001111455566776766 48999999999999987665555
Q ss_pred hhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc--h-h----------------hhcCchHHHHhhhccC--
Q 000326 93 AAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT--A-C----------------LRAGALMAVLSYLDFF-- 151 (1661)
Q Consensus 93 ~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~--~-I----------------l~~GgL~~LL~lLd~~-- 151 (1661)
....+ .++-.|.-+.+.+++.+++-||+.--.-||.+..+ . + --+..++-+|.+|...
T Consensus 257 ~~ymE-~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~e 335 (858)
T COG5215 257 QSYME-NALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGE 335 (858)
T ss_pred HHHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCC
Confidence 54554 45666666888999999999998877777765332 0 0 0134788889998531
Q ss_pred -------ChHH-HHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHh
Q 000326 152 -------STGV-QRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCN 223 (1661)
Q Consensus 152 -------~~~v-qr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~ 223 (1661)
++++ -..|+...+.+|.+ .++..++..+-.-+++++-.-.+.|..|+..+.++ .....+-.++
T Consensus 336 d~~~DdWn~smaA~sCLqlfaq~~gd------~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~g--p~~~~lT~~V- 406 (858)
T COG5215 336 DYYGDDWNPSMAASSCLQLFAQLKGD------KIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHG--PCEDCLTKIV- 406 (858)
T ss_pred CccccccchhhhHHHHHHHHHHHhhh------HhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcC--ccHHHHHhhH-
Confidence 2232 22344445555543 23555677666778999999999999999999997 4455555555
Q ss_pred CCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHH-cC-ChHHHHHhhcCC---C---cccccc
Q 000326 224 HGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLH-LG-ISGILKDILSGS---G---VSANSA 295 (1661)
Q Consensus 224 ~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~t~~Ll~-~g-il~~L~~LL~~~---~---~~~~~~ 295 (1661)
+.++|-+..++... +.-++....|+++.|+.. ...+|+ ++ +......+|.|- . ..++|.
T Consensus 407 ~qalp~i~n~m~D~---------~l~vk~ttAwc~g~iad~----va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~ 473 (858)
T COG5215 407 PQALPGIENEMSDS---------CLWVKSTTAWCFGAIADH----VAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWR 473 (858)
T ss_pred HhhhHHHHHhcccc---------eeehhhHHHHHHHHHHHH----HHHhcCccccccHHHHHHHhhhhccchHHhhhHHH
Confidence 56788888888743 344777889999999854 233444 44 334444444442 1 145666
Q ss_pred cccccCCCHHHHHHHHHHhcccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCcchhhhHHHhhccCHHH
Q 000326 296 VPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPEL 375 (1661)
Q Consensus 296 ~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~ 375 (1661)
..++ -+|+..+.+-....|-+.. +++...+.+|+-.. ..+...|...+..=-.+
T Consensus 474 ~~nl----v~h~a~a~~~~~S~l~~fY------~ai~~~Lv~~t~~~----------------~Ne~n~R~s~fsaLgtl 527 (858)
T COG5215 474 KENL----VDHIAKAVREVESFLAKFY------LAILNALVKGTELA----------------LNESNLRVSLFSALGTL 527 (858)
T ss_pred HHhH----HHhhhhhhccccchhHHHH------HHHHHHHHHHHHhh----------------ccchhHHHHHHHHHHHH
Confidence 5443 2333333321000000000 00001111111000 01223444443222221
Q ss_pred HHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHhhcCCHHHHHHHhhhcchHHHHHHHhhcCCCchHHhHHHHHHHHH
Q 000326 376 LQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILM 455 (1661)
Q Consensus 376 ~~~f~~~l~p~Li~vy~ss~~~~VR~~~L~~i~r~v~~~~~~~L~~~l~~~~~ss~la~il~~~d~~l~~~aL~i~~~Ll 455 (1661)
+..--..+.|++..+|.=+..- =-.|...+-.+..-=+...++++. .++...|++|+...-+++--.+=|+.++++
T Consensus 528 i~~~~d~V~~~~a~~~~~~~~k--l~~~isv~~q~l~~eD~~~~~elq--SN~~~vl~aiir~~~~~ie~v~D~lm~Lf~ 603 (858)
T COG5215 528 ILICPDAVSDILAGFYDYTSKK--LDECISVLGQILATEDQLLVEELQ--SNYIGVLEAIIRTRRRDIEDVEDQLMELFI 603 (858)
T ss_pred HhhcchhHHHHHHHHHHHHHHH--HHHHHHHhhhhhhhHHHHHHHHHH--HHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 1111123455555555432221 113444444443332333333333 367788888887665544444445555555
Q ss_pred hhCchhhhhhHHhhcHHHHHHHHHhc
Q 000326 456 EKLPGTFSKMFVREGVVHAVDQLILA 481 (1661)
Q Consensus 456 ~K~pd~f~~~f~REGV~~~I~~L~~~ 481 (1661)
+-+... .+.|..+-|+..|..|+..
T Consensus 604 r~les~-~~t~~~~dV~~aIsal~~s 628 (858)
T COG5215 604 RILEST-KPTTAFGDVYTAISALSTS 628 (858)
T ss_pred HHHhcc-CCchhhhHHHHHHHHHHHH
Confidence 444443 6788999999999999874
No 67
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.011 Score=73.79 Aligned_cols=245 Identities=16% Similarity=0.150 Sum_probs=158.2
Q ss_pred chHHHHHHHh---hcCCCHHHHHHHHHHHHHHHhcCC-CcccccccccC-----cHHHHHHhhcCCC--------CHHH-
Q 000326 12 GRLKKILSGL---RADGEEGKQVEALTQLCEMLSIGT-EESLSTFSVDS-----FAPVLVGLLNHES--------NPDI- 73 (1661)
Q Consensus 12 ~~l~~Ll~~L---~s~~D~~~ql~Al~~L~~lL~~~~-~~~l~~~~~~g-----~vp~Lv~lL~~~~--------~~ei- 73 (1661)
..+.++++.| .|. |+.+|..+.+.+-+.-..-+ +-.+-.+...+ .+..+..+|-..+ -+++
T Consensus 10 ~~l~ql~~lLk~s~Sp-n~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~ 88 (885)
T KOG2023|consen 10 QGLQQLAQLLKNSQSP-NSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVL 88 (885)
T ss_pred HHHHHHHHHHHhccCC-ChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHH
Confidence 3456666666 354 88999888888754433211 01111111111 2344444442110 1122
Q ss_pred HHHHHHHHHHhhccCCcchhh--------hccc-------ccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcch----
Q 000326 74 MLLAARALTHLCDVLPSSCAA--------VVHY-------GAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTA---- 134 (1661)
Q Consensus 74 q~~A~raL~NLa~~~p~~~~~--------vV~~-------GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~---- 134 (1661)
-..=.-||-+|...++ .++. |+.. ..+|.|| .||.+++....|-|..||.+|+.|++..
T Consensus 89 ~yiKs~~l~~lgd~~~-lIr~tvGivITTI~s~~~~~~wpelLp~L~-~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~ 166 (885)
T KOG2023|consen 89 DYIKSECLHGLGDASP-LIRATVGIVITTIASTGGLQHWPELLPQLC-ELLDSPDYNTCEGAFGALQKICEDSAQFLDSD 166 (885)
T ss_pred HHHHHHHHhhccCchH-HHHhhhhheeeeeecccccccchhHHHHHH-HHhcCCcccccchhHHHHHHHHhhhHHHHhhh
Confidence 2233446666665554 2221 2222 2589999 8999999999999999999999998751
Q ss_pred hhh---cCchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhc
Q 000326 135 CLR---AGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAF 211 (1661)
Q Consensus 135 Il~---~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~ 211 (1661)
+.. .-.|+.+++|..+.++.+...|+.|+....-..+..-...+-..+..|..+-+..|++|..+.|.+|..|.+-
T Consensus 167 ~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev- 245 (885)
T KOG2023|consen 167 VLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV- 245 (885)
T ss_pred cccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh-
Confidence 221 2257888889899999999999999887666555555566777889999888899999999999999999995
Q ss_pred CCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 000326 212 ASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLH 274 (1661)
Q Consensus 212 ~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~t~~Ll~ 274 (1661)
.++.+..-+ .++++-+++..+.. +.++-..|+.....+|... +-..++.
T Consensus 246 --r~dkl~phl-~~IveyML~~tqd~---------dE~VALEACEFwla~aeqp--i~~~~L~ 294 (885)
T KOG2023|consen 246 --RPDKLVPHL-DNIVEYMLQRTQDV---------DENVALEACEFWLALAEQP--ICKEVLQ 294 (885)
T ss_pred --cHHhcccch-HHHHHHHHHHccCc---------chhHHHHHHHHHHHHhcCc--CcHHHHH
Confidence 444333222 14555555554443 5778899999999998775 3344444
No 68
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.37 Score=61.59 Aligned_cols=330 Identities=17% Similarity=0.207 Sum_probs=194.4
Q ss_pred cchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 000326 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPS 90 (1661)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~ 90 (1661)
.-+-.+|.+.|.+. |.+...+|+..+=.+++.+.. +|. ++-.++++--...+.+++ +.|++..+..|.
T Consensus 19 ~~~~~~ik~~Lek~-~~~~KIeamK~ii~~mlnGe~-----~p~--Llm~IiRfvlps~~~elK----KLly~ywE~vPK 86 (948)
T KOG1058|consen 19 PMSEDEIKEKLEKG-DDEVKIEAMKKIIALMLNGED-----LPS--LLMTIIRFVLPSRNHELK----KLLYYYWELVPK 86 (948)
T ss_pred ccchHHHHHHHhcC-ChHHHHHHHHHHHHHHHcCCC-----chH--HHHHHhheeeccCchHHH----HHHHHHHHHccc
Confidence 33445678888876 778889999888777776632 111 233333332222345666 355666555443
Q ss_pred chh--hhcccccHHHHHH---HHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhccCChHHHHHHHHHHHH
Q 000326 91 SCA--AVVHYGAVTCFVA---RLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAAN 165 (1661)
Q Consensus 91 ~~~--~vV~~GaVp~Lv~---kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsN 165 (1661)
... .+... +=.+|+ +=|++++.=++-..+.-|+++ ....++ ..-++.+.+.|.+...-+.|+|+.|+..
T Consensus 87 t~~dgkl~~E--MILvcna~RkDLQHPNEyiRG~TLRFLckL---kE~ELl-epl~p~IracleHrhsYVRrNAilaifs 160 (948)
T KOG1058|consen 87 TDSDGKLLHE--MILVCNAYRKDLQHPNEYIRGSTLRFLCKL---KEPELL-EPLMPSIRACLEHRHSYVRRNAILAIFS 160 (948)
T ss_pred cCCCcccHHH--HHHHHHHHhhhccCchHhhcchhhhhhhhc---CcHHHh-hhhHHHHHHHHhCcchhhhhhhheeehh
Confidence 322 01100 001121 335566666666555555554 222233 3467888888999999999999999988
Q ss_pred hccCCCCchhHHHhCcHHHHHHh-hccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCC
Q 000326 166 MCKKLPSDAADFVMEAVPLLTNL-LQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQA 244 (1661)
Q Consensus 166 lc~~~~~~~~~~v~~~lp~L~~l-L~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~ 244 (1661)
+-++ ....+.++-..+... +...|+.+..+|...|..+- +++.- .-|...+.. -+
T Consensus 161 Iyk~----~~~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D------~ErAl--------~Yl~~~idq------i~ 216 (948)
T KOG1058|consen 161 IYKN----FEHLIPDAPELIESFLLTEQDPSCKRNAFLMLFTTD------PERAL--------NYLLSNIDQ------IP 216 (948)
T ss_pred HHhh----hhhhcCChHHHHHHHHHhccCchhHHHHHHHHHhcC------HHHHH--------HHHHhhHhh------cc
Confidence 8765 123455666666666 45679999999887664332 22211 111111100 11
Q ss_pred CCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcc----cccccccccCCCHHHHHHHHHHhcccCCC
Q 000326 245 SLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVS----ANSAVPPALSRPAEQIFEIVNLANELLPP 320 (1661)
Q Consensus 245 ~~s~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~----~~~~~s~i~~~~~~qi~~vi~li~~LLP~ 320 (1661)
++++..+..++..|...|-.++......| .+|+.+|++.+.. +..++.. +...+.-+....+-+..|+-.
T Consensus 217 ~~~~~LqlViVE~Irkv~~~~p~~~~~~i-----~~i~~lL~stssaV~fEaa~tlv~-lS~~p~alk~Aa~~~i~l~~k 290 (948)
T KOG1058|consen 217 SFNDSLQLVIVELIRKVCLANPAEKARYI-----RCIYNLLSSTSSAVIFEAAGTLVT-LSNDPTALKAAASTYIDLLVK 290 (948)
T ss_pred CccHHHHHHHHHHHHHHHhcCHHHhhHHH-----HHHHHHHhcCCchhhhhhcceEEE-ccCCHHHHHHHHHHHHHHHHh
Confidence 24566777788888888877777655444 4899999877642 2222211 334455555555544444443
Q ss_pred CCCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCcchhhhHHHhhcc-CHHHHHHHHHHHHHHHHHHHhccCChHH
Q 000326 321 LPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSD-QPELLQQFGMDLLPVLIQIYGSSVNSPV 399 (1661)
Q Consensus 321 L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~e~~~~f~~~l~p~Li~vy~ss~~~~V 399 (1661)
..++- .+-....|..-++. +...++.++.+++++| ++.+.+|
T Consensus 291 esdnn--------------------------------vklIvldrl~~l~~~~~~il~~l~mDvLrvL-----ss~dldv 333 (948)
T KOG1058|consen 291 ESDNN--------------------------------VKLIVLDRLSELKALHEKILQGLIMDVLRVL-----SSPDLDV 333 (948)
T ss_pred ccCcc--------------------------------hhhhhHHHHHHHhhhhHHHHHHHHHHHHHHc-----CcccccH
Confidence 33311 01123345544443 4445677777777766 8999999
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHhhh
Q 000326 400 RHKCLSVIGKLMYFSSAEMIQSLLSV 425 (1661)
Q Consensus 400 R~~~L~~i~r~v~~~~~~~L~~~l~~ 425 (1661)
|+|||...+.+++.-+-+.+..+++.
T Consensus 334 r~Ktldi~ldLvssrNvediv~~Lkk 359 (948)
T KOG1058|consen 334 RSKTLDIALDLVSSRNVEDIVQFLKK 359 (948)
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHHH
Confidence 99999999999999998877666554
No 69
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=96.94 E-value=0.0051 Score=73.26 Aligned_cols=176 Identities=18% Similarity=0.153 Sum_probs=127.9
Q ss_pred ccccCcHHHHHHhhcCCC-CHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhcc
Q 000326 52 FSVDSFAPVLVGLLNHES-NPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQE 130 (1661)
Q Consensus 52 ~~~~g~vp~Lv~lL~~~~-~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~ 130 (1661)
+..+|.+..|+.++..++ ...+..+|++.|-.+... ++...|+.-| ...+++.--....++++...+..|+++-..
T Consensus 176 iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a--eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKH 252 (832)
T KOG3678|consen 176 IRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA--ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKH 252 (832)
T ss_pred hhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh--hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhh
Confidence 445677888999998764 233477999999998764 5677787766 444442223456789999999999999887
Q ss_pred Ccc---hhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCC--CchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHH
Q 000326 131 HPT---ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLP--SDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLT 205 (1661)
Q Consensus 131 ~~~---~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~--~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs 205 (1661)
+.. .++..|+|.+++....-.++.+.|.|+-++.||+-..- ...-...+.+-..|..|-.+.|.-..-.||.+++
T Consensus 253 Seet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~ 332 (832)
T KOG3678|consen 253 SEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVA 332 (832)
T ss_pred hHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHh
Confidence 665 58899999999999988899999999999999987432 2222223456667777777778888899999999
Q ss_pred HHHhhcCCCHHHHHHHHhCC---cHHHHHHhh
Q 000326 206 RIAEAFASSPDKLDELCNHG---LVTQAATLI 234 (1661)
Q Consensus 206 ~L~~~~~~~~e~~~~li~~g---ll~~Lv~LL 234 (1661)
-|+.. .+.-..+-..| +++.++..+
T Consensus 333 vlat~----KE~E~~VrkS~TlaLVEPlva~~ 360 (832)
T KOG3678|consen 333 VLATN----KEVEREVRKSGTLALVEPLVASL 360 (832)
T ss_pred hhhhh----hhhhHHHhhccchhhhhhhhhcc
Confidence 99983 44444444455 344444433
No 70
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.92 E-value=0.0038 Score=60.07 Aligned_cols=87 Identities=28% Similarity=0.341 Sum_probs=68.6
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchh
Q 000326 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCA 93 (1661)
Q Consensus 14 l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~ 93 (1661)
++.|++.|..+.|+.++..|+..|++ +....++|.|+++|+++ ++.++..|+++|..|-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~------------~~~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~i~-------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGE------------LGDPEAIPALIELLKDE-DPMVRRAAARALGRIG-------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHC------------CTHHHHHHHHHHHHTSS-SHHHHHHHHHHHHCCH--------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHH------------cCCHhHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--------
Confidence 57899999555699999999999972 22335699999999765 6999999999999883
Q ss_pred hhcccccHHHHHHHHhcC-CcHHHHHHHHHHHH
Q 000326 94 AVVHYGAVTCFVARLLTI-EYMDLAEQSLQALK 125 (1661)
Q Consensus 94 ~vV~~GaVp~Lv~kLL~~-~~~dl~Eqal~aL~ 125 (1661)
...+++.|+ +++.. ....+++.|+++|+
T Consensus 60 ---~~~~~~~L~-~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 ---DPEAIPALI-KLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ---HHHTHHHHH-HHHTC-SSHHHHHHHHHHHH
T ss_pred ---CHHHHHHHH-HHHcCCCcHHHHHHHHhhcC
Confidence 234889999 55554 55677999999986
No 71
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.90 E-value=0.0032 Score=60.55 Aligned_cols=87 Identities=28% Similarity=0.331 Sum_probs=69.6
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhh
Q 000326 58 APVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLR 137 (1661)
Q Consensus 58 vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~ 137 (1661)
||.|++.|..+.++.++..|+++|+++-. ..++|.|+ .++..+++.++.+|+++|+.|- .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~-~~l~d~~~~vr~~a~~aL~~i~--------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD-----------PEAIPALI-ELLKDEDPMVRRAAARALGRIG--------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-----------HHHHHHHH-HHHTSSSHHHHHHHHHHHHCCH--------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------HhHHHHHH-HHHcCCCHHHHHHHHHHHHHhC--------C
Confidence 68999999556679999999999995532 14799999 7889999999999999999994 2
Q ss_pred cCchHHHHhhhccC-ChHHHHHHHHHHH
Q 000326 138 AGALMAVLSYLDFF-STGVQRVALSTAA 164 (1661)
Q Consensus 138 ~GgL~~LL~lLd~~-~~~vqr~Al~aLs 164 (1661)
...++.|..++... +..++..|+++|+
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 44788888888764 5556788888774
No 72
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=96.83 E-value=0.0032 Score=64.30 Aligned_cols=132 Identities=14% Similarity=0.116 Sum_probs=113.3
Q ss_pred ccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc--hhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhH
Q 000326 99 GAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT--ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAAD 176 (1661)
Q Consensus 99 GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~--~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~ 176 (1661)
+-+..|++......+++-+||.+.-|.|.+=|..+ .+.+..++...+.-|...+..+...++..++|+|-......+.
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I 95 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFI 95 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHH
Confidence 45778888888999999999999999999999887 4667889999999998888899999999999999988777777
Q ss_pred HHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHh
Q 000326 177 FVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATL 233 (1661)
Q Consensus 177 ~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~L 233 (1661)
.-.+.+|.+...|.+....++-.|+.++..|+.+ .....+++....++..+.+.
T Consensus 96 ~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~---~Rt~r~ell~p~Vv~~v~r~ 149 (173)
T KOG4646|consen 96 REALGLPLIIFVLSSPPEITVHSAALFLQLLEFG---ERTERDELLSPAVVRTVQRW 149 (173)
T ss_pred HHhcCCceEEeecCCChHHHHHHHHHHHHHhcCc---ccchhHHhccHHHHHHHHHH
Confidence 7788999999999999999999999999999997 66677777766555554443
No 73
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.79 E-value=0.37 Score=60.62 Aligned_cols=376 Identities=19% Similarity=0.194 Sum_probs=202.1
Q ss_pred HHHHHHHhhcCCCH--HHHHHHHHHHHHHHhcCCCccc-ccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 000326 14 LKKILSGLRADGEE--GKQVEALTQLCEMLSIGTEESL-STFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPS 90 (1661)
Q Consensus 14 l~~Ll~~L~s~~D~--~~ql~Al~~L~~lL~~~~~~~l-~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~ 90 (1661)
++.+++.|..+.+. ......+..|+++.. ++.+ ..+.. .++..|-..++.+.+.+....++.+|.++++...+
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~---~~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~ 76 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALST---SPQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQE 76 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHHC---ChhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccc
Confidence 46788888665222 333444444444333 3322 22211 34444444444444677888999999999876544
Q ss_pred ch---h--hhcccccHHHHHHHHhcCCc------HHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhc---------c
Q 000326 91 SC---A--AVVHYGAVTCFVARLLTIEY------MDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLD---------F 150 (1661)
Q Consensus 91 ~~---~--~vV~~GaVp~Lv~kLL~~~~------~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd---------~ 150 (1661)
.. . ...+..+||.|.+..+.... ..+.+.+...+..|.+.-+..- +...+..+..++- .
T Consensus 77 ~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~-q~~~~~~~~~lf~~~~~~~~~~~ 155 (415)
T PF12460_consen 77 DKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEK-QQEILDELYSLFLSPKSFSPFQP 155 (415)
T ss_pred ccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHccccccCCCCc
Confidence 44 1 22333488888844444322 3444444455555544433210 0111222332221 0
Q ss_pred CCh---HHHHHHHHHHHHhccCCC-CchhHHHhCcHHHHHHh-hccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCC
Q 000326 151 FST---GVQRVALSTAANMCKKLP-SDAADFVMEAVPLLTNL-LQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHG 225 (1661)
Q Consensus 151 ~~~---~vqr~Al~aLsNlc~~~~-~~~~~~v~~~lp~L~~l-L~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~g 225 (1661)
... ..++..+.....+..+.+ ...+....+.+..+..+ +...++.+...++.+++-|+..+.. .+.++.++
T Consensus 156 ~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~-~~~l~~~l--- 231 (415)
T PF12460_consen 156 SSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPD-DDDLDEFL--- 231 (415)
T ss_pred cccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCC-hhhHHHHH---
Confidence 111 234444444444433322 11222334477777777 5566788999999999999986422 23333333
Q ss_pred cHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHh-cCCHHHHHHHHHcCChHHHHHhhcCCCcccccccccccCCCH
Q 000326 226 LVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCA-SGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPA 304 (1661)
Q Consensus 226 ll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLa-s~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~ 304 (1661)
..+..-+... .+.......+.-.+|+.--++ ++++.. ..++ +.|..+|.+... .
T Consensus 232 --~~~~~~~~~~----~~~~~~~~~~~~~~Wi~KaLv~R~~~~~-~~~~-----~~L~~lL~~~~~--g----------- 286 (415)
T PF12460_consen 232 --DSLLQSISSS----EDSELRPQALEILIWITKALVMRGHPLA-TELL-----DKLLELLSSPEL--G----------- 286 (415)
T ss_pred --HHHHhhhccc----CCcchhHHHHHHHHHHHHHHHHcCCchH-HHHH-----HHHHHHhCChhh--H-----------
Confidence 2333333111 122234455555666665544 455443 3332 356666665211 1
Q ss_pred HHHHHHHHHhcccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCcchhhhHHHhhccCHHHHHHHHHHHH
Q 000326 305 EQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLL 384 (1661)
Q Consensus 305 ~qi~~vi~li~~LLP~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~f~~~l~ 384 (1661)
..+-..+. -|+-.. ++... + ..-..++ +=.-|+|...++
T Consensus 287 ~~aA~~f~---il~~d~-~~~l~--------------~------------------~~~a~vk-----lLykQR~F~~~~ 325 (415)
T PF12460_consen 287 QQAAKAFG---ILLSDS-DDVLN--------------K------------------ENHANVK-----LLYKQRFFTQVL 325 (415)
T ss_pred HHHHHHHh---hHhcCc-HHhcC--------------c------------------cccchhh-----hHHhHHHHHHHH
Confidence 11111111 111100 00000 0 0001111 112368888999
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHHhhcCCHHHHHHHhhhcchHHHHHHHhhcCCCchHHhHHHHHHHHHhhCchhhhh
Q 000326 385 PVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSK 464 (1661)
Q Consensus 385 p~Li~vy~ss~~~~VR~~~L~~i~r~v~~~~~~~L~~~l~~~~~ss~la~il~~~d~~l~~~aL~i~~~Ll~K~pd~f~~ 464 (1661)
|.|++-|.++.+. +|..+|.|+.-++.++..+.+..=+. .+-.++..-|...|..+...+|++...+++..|+++..
T Consensus 326 p~L~~~~~~~~~~-~k~~yL~ALs~ll~~vP~~vl~~~l~--~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~ 402 (415)
T PF12460_consen 326 PKLLEGFKEADDE-IKSNYLTALSHLLKNVPKSVLLPELP--TLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISE 402 (415)
T ss_pred HHHHHHHhhcChh-hHHHHHHHHHHHHhhCCHHHHHHHHH--HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 9999999987776 99999999999999999877664332 34455666678888899999999999999999998888
Q ss_pred hHH
Q 000326 465 MFV 467 (1661)
Q Consensus 465 ~f~ 467 (1661)
|+.
T Consensus 403 hl~ 405 (415)
T PF12460_consen 403 HLS 405 (415)
T ss_pred HHH
Confidence 665
No 74
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=0.073 Score=68.43 Aligned_cols=222 Identities=16% Similarity=0.098 Sum_probs=146.8
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000326 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1661)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~ 91 (1661)
+.+.++-..|.+. -+..+..|+ ++++..++- +.-..++-|.++.++...+ .+++...=--|.|++.+.|+.
T Consensus 13 ~ei~elks~l~s~-~~~kr~~a~---kkvIa~Mt~----G~DvSslF~dvvk~~~T~d-lelKKlvyLYl~nYa~~~P~~ 83 (734)
T KOG1061|consen 13 GEIPELKSQLNSQ-SKEKRKDAV---KKVIAYMTV----GKDVSSLFPDVVKCMQTRD-LELKKLVYLYLMNYAKGKPDL 83 (734)
T ss_pred hhchHHHHHhhhh-hhhhHHHHH---HHHHhcCcc----CcchHhhhHHHHhhcccCC-chHHHHHHHHHHHhhccCchH
Confidence 3556666667554 335555554 455554431 2445678899999998775 888888777888998887755
Q ss_pred hhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCC
Q 000326 92 CAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLP 171 (1661)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~ 171 (1661)
.. ++|..++ +=-..+++.++--|+.+++-|--+. +. .-...+|+..++...+-+++.|+.+++++-.-.
T Consensus 84 a~-----~avnt~~-kD~~d~np~iR~lAlrtm~~l~v~~---i~-ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~- 152 (734)
T KOG1061|consen 84 AI-----LAVNTFL-KDCEDPNPLIRALALRTMGCLRVDK---IT-EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID- 152 (734)
T ss_pred HH-----hhhhhhh-ccCCCCCHHHHHHHhhceeeEeehH---HH-HHHHHHHHHhccCCChhHHHHHHHHHHHhhcCC-
Confidence 43 4677777 5555666788877777776653322 22 235678888999999999999999888876532
Q ss_pred CchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHH
Q 000326 172 SDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTY 251 (1661)
Q Consensus 172 ~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~ 251 (1661)
.+.....+.++.|..++...|+.|+.+|+.+|+.|.+. +++..-..+..-++..++..|... +.--+
T Consensus 153 -~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~---~~~~~~~~l~~~~~~~lL~al~ec---------~EW~q 219 (734)
T KOG1061|consen 153 -PDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHES---HPSVNLLELNPQLINKLLEALNEC---------TEWGQ 219 (734)
T ss_pred -hhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHh---CCCCCcccccHHHHHHHHHHHHHh---------hhhhH
Confidence 34445678999999999999999999999999999996 443222222233444555555433 22334
Q ss_pred HHHHHHHHHHhcCCH
Q 000326 252 TGLIRLLSTCASGSP 266 (1661)
Q Consensus 252 ~~alr~L~nLas~s~ 266 (1661)
..++.++.+-...++
T Consensus 220 i~IL~~l~~y~p~d~ 234 (734)
T KOG1061|consen 220 IFILDCLAEYVPKDS 234 (734)
T ss_pred HHHHHHHHhcCCCCc
Confidence 455555555444433
No 75
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=96.72 E-value=0.09 Score=64.82 Aligned_cols=375 Identities=13% Similarity=0.101 Sum_probs=201.1
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHhcCCCcc--ccccc-------------ccCcHHHHHHhhcC------CCCHHHHHHH
Q 000326 19 SGLRADGEEGKQVEALTQLCEMLSIGTEES--LSTFS-------------VDSFAPVLVGLLNH------ESNPDIMLLA 77 (1661)
Q Consensus 19 ~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~--l~~~~-------------~~g~vp~Lv~lL~~------~~~~eiq~~A 77 (1661)
...++. +..+..+|+.--+-+...+.+-. +..+| ...++|.|+++|.. +++-.+-..|
T Consensus 270 ~~mks~-nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA 348 (858)
T COG5215 270 RFMKSQ-NDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAA 348 (858)
T ss_pred HHhcCc-chHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhH
Confidence 345676 66788888776655544333211 12344 44489999999964 2345577788
Q ss_pred HHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcch---hhhcCchHHHHhhhccCChH
Q 000326 78 ARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTA---CLRAGALMAVLSYLDFFSTG 154 (1661)
Q Consensus 78 ~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~---Il~~GgL~~LL~lLd~~~~~ 154 (1661)
.-||--.+.. ....|++. |=.+++.=+.+++-.-+|.++-|+|.+-...... -+-..+++.++........-
T Consensus 349 ~sCLqlfaq~---~gd~i~~p--Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~ 423 (858)
T COG5215 349 SSCLQLFAQL---KGDKIMRP--VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLW 423 (858)
T ss_pred HHHHHHHHHH---hhhHhHHH--HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceee
Confidence 8888777753 23345542 4456656666777777899999999997655542 22355777788777777778
Q ss_pred HHHHHHHHHHHhccCCCC---chhHHHhCcHHHHHHh-hcc-CCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHH
Q 000326 155 VQRVALSTAANMCKKLPS---DAADFVMEAVPLLTNL-LQY-HDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQ 229 (1661)
Q Consensus 155 vqr~Al~aLsNlc~~~~~---~~~~~v~~~lp~L~~l-L~~-~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~ 229 (1661)
+...++||+..++...+. +..+ ..+..... +.- ..+.+..++||.+.++++.+.........++. ..-+.
T Consensus 424 vk~ttAwc~g~iad~va~~i~p~~H----l~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~-~fY~a 498 (858)
T COG5215 424 VKSTTAWCFGAIADHVAMIISPCGH----LVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLA-KFYLA 498 (858)
T ss_pred hhhHHHHHHHHHHHHHHHhcCcccc----ccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhH-HHHHH
Confidence 889999999999875421 1111 12222222 222 34899999999999999975322211122221 11122
Q ss_pred HHH-hhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCccccccc-ccccCCCHHH-
Q 000326 230 AAT-LISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAV-PPALSRPAEQ- 306 (1661)
Q Consensus 230 Lv~-LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~-s~i~~~~~~q- 306 (1661)
++. |+...+.++ ...+....+..+|+.+..-+++....++ .|+.+....=|.. ++++ .++.+-...+
T Consensus 499 i~~~Lv~~t~~~~----Ne~n~R~s~fsaLgtli~~~~d~V~~~~-a~~~~~~~~kl~~-----~isv~~q~l~~eD~~~ 568 (858)
T COG5215 499 ILNALVKGTELAL----NESNLRVSLFSALGTLILICPDAVSDIL-AGFYDYTSKKLDE-----CISVLGQILATEDQLL 568 (858)
T ss_pred HHHHHHHHHHhhc----cchhHHHHHHHHHHHHHhhcchhHHHHH-HHHHHHHHHHHHH-----HHHHhhhhhhhHHHHH
Confidence 222 221111110 1345777788889888877665433222 3333333332221 1111 1121111111
Q ss_pred HHHHHHHhcccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCcchhhhHHHhhccCHHHHHHHHHHHHHH
Q 000326 307 IFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPV 386 (1661)
Q Consensus 307 i~~vi~li~~LLP~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~f~~~l~p~ 386 (1661)
++++..=+.++|..++... +. + +...-..|+-+
T Consensus 569 ~~elqSN~~~vl~aiir~~-------------------~~-------------------------~---ie~v~D~lm~L 601 (858)
T COG5215 569 VEELQSNYIGVLEAIIRTR-------------------RR-------------------------D---IEDVEDQLMEL 601 (858)
T ss_pred HHHHHHHHHHHHHHHHHhc-------------------CC-------------------------C---cccHHHHHHHH
Confidence 2222221222222222100 00 0 00001245666
Q ss_pred HHHHHhccCChHHHHHHHHHHHHHhhcCCHHHHHHHhhhcchHHHHHHHhhcCCCchHHhHHHHHHHHHhhCchhhhh
Q 000326 387 LIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSK 464 (1661)
Q Consensus 387 Li~vy~ss~~~~VR~~~L~~i~r~v~~~~~~~L~~~l~~~~~ss~la~il~~~d~~l~~~aL~i~~~Ll~K~pd~f~~ 464 (1661)
|+.+..++-..-+--.++.+|-.+........-+-+ ..+.-|+..-|+..|.-+...|.-++--|-..+...|..
T Consensus 602 f~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~---~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~ 676 (858)
T COG5215 602 FIRILESTKPTTAFGDVYTAISALSTSLEERFEQYA---SKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNI 676 (858)
T ss_pred HHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 677777664555667788888776633222111111 345666777777788777777776666666555444443
No 76
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.72 E-value=0.24 Score=62.79 Aligned_cols=234 Identities=10% Similarity=0.105 Sum_probs=146.0
Q ss_pred cchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCC-CHHHHHHHHHHHHHhhccCC
Q 000326 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHES-NPDIMLLAARALTHLCDVLP 89 (1661)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~-~~eiq~~A~raL~NLa~~~p 89 (1661)
...+..+|..|+++ .+..+...+....++...-..--+..-..+.++..++--++..+ ...+++...-++.|-...-
T Consensus 715 ~~~v~R~v~~lkde-~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r- 792 (1172)
T KOG0213|consen 715 DPIVSRVVLDLKDE-PEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGR- 792 (1172)
T ss_pred hHHHHHHhhhhccc-cHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhc-
Confidence 45678888999887 55445555566666655432211222233345555555555333 2335555555555544431
Q ss_pred cchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhcc---Ccc--hhhhcCchHHHHhhhccCChHHHHHHHHHHH
Q 000326 90 SSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQE---HPT--ACLRAGALMAVLSYLDFFSTGVQRVALSTAA 164 (1661)
Q Consensus 90 ~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~---~~~--~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLs 164 (1661)
....+- -++..++ .+|.+...++++||+..++.|+.- +.. ..-..|. .|..+|+...+.+.-..+-++.
T Consensus 793 -~kpylp--qi~stiL-~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAik 866 (1172)
T KOG0213|consen 793 -VKPYLP--QICSTIL-WRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIK 866 (1172)
T ss_pred -cccchH--HHHHHHH-HHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHH
Confidence 011111 1344555 778899999999999999998752 221 2222332 2556777777777665555554
Q ss_pred HhccCCC-CchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCC
Q 000326 165 NMCKKLP-SDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQ 243 (1661)
Q Consensus 165 Nlc~~~~-~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~ 243 (1661)
.++.... ..-+.-+++++|.|..+|.+...+|++++...+..||+. .++.+..-----++-.|+++|...
T Consensus 867 aI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadr---gpE~v~aREWMRIcfeLlelLkah------ 937 (1172)
T KOG0213|consen 867 AIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADR---GPEYVSAREWMRICFELLELLKAH------ 937 (1172)
T ss_pred HHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhc---CcccCCHHHHHHHHHHHHHHHHHH------
Confidence 4443221 112223688999999999999999999999999999997 666443322234677888888765
Q ss_pred CCCChhHHHHHHHHHHHHhcC
Q 000326 244 ASLSTPTYTGLIRLLSTCASG 264 (1661)
Q Consensus 244 ~~~s~~i~~~alr~L~nLas~ 264 (1661)
+.++...+...++.|+..
T Consensus 938 ---kK~iRRaa~nTfG~Iaka 955 (1172)
T KOG0213|consen 938 ---KKEIRRAAVNTFGYIAKA 955 (1172)
T ss_pred ---HHHHHHHHHhhhhHHHHh
Confidence 567999999999999853
No 77
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.70 E-value=0.0017 Score=57.10 Aligned_cols=55 Identities=20% Similarity=0.196 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 000326 71 PDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKI 127 (1661)
Q Consensus 71 ~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nI 127 (1661)
|.++..|+|+|++++...++.....+ ..++|.|+ .+|..++.+|+..|+|||++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~-~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALI-PLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHH-HHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHH-HHHcCCCHHHHHHHHHHHhcC
Confidence 46888999999999988877766644 47899999 888888889999999999987
No 78
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.69 E-value=0.067 Score=64.54 Aligned_cols=257 Identities=12% Similarity=0.077 Sum_probs=167.5
Q ss_pred cchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 000326 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPS 90 (1661)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~ 90 (1661)
.+-+.+|+...... +++.....+.-|-++--.+ -....++..|++|.|+.+|.++... --|...|+.|.. ..+
T Consensus 344 ~~iveKL~klfp~~-h~dL~~~tl~LlfNlSFD~--glr~KMv~~GllP~l~~ll~~d~~~---~iA~~~lYh~S~-dD~ 416 (791)
T KOG1222|consen 344 NGIVEKLLKLFPIQ-HPDLRKATLMLLFNLSFDS--GLRPKMVNGGLLPHLASLLDSDTKH---GIALNMLYHLSC-DDD 416 (791)
T ss_pred ccHHHHHHHhcCCC-CHHHHHHHHHHhhhccccc--cccHHHhhccchHHHHHHhCCcccc---hhhhhhhhhhcc-CcH
Confidence 45567777777776 7777766655443322222 2224578889999999999866422 134445555554 456
Q ss_pred chhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc--hhhhcCchHHHHhhhccCChHHHHHHHHHHHHhcc
Q 000326 91 SCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT--ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCK 168 (1661)
Q Consensus 91 ~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~--~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~ 168 (1661)
....+....+||.|+..++.....++-...+...-|||.+..+ .|.+..|+..|+..--.+...+ .+..+.|+..
T Consensus 417 ~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~l---LmK~vRniSq 493 (791)
T KOG1222|consen 417 AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLL---LMKVVRNISQ 493 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchH---HHHHHHHhhh
Confidence 7777778899999998888887776666666666788876554 5666667777665432222222 2345667776
Q ss_pred CCCCchhHHHhCcHHHHHHhhccC-CHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCC
Q 000326 169 KLPSDAADFVMEAVPLLTNLLQYH-DAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLS 247 (1661)
Q Consensus 169 ~~~~~~~~~v~~~lp~L~~lL~~~-D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s 247 (1661)
...+.. ...-+-+..|..++... +....-.++-.+++|.-- +-+--..+-+..++|-+-..|..+- --
T Consensus 494 Heg~tq-n~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~---dldw~~ilq~~~LvPw~k~~L~pga-------~e 562 (791)
T KOG1222|consen 494 HEGATQ-NMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVT---DLDWAKILQSENLVPWMKTQLQPGA-------DE 562 (791)
T ss_pred ccchHH-HHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccC---CCCHHHHHhhccccHHHHHhhcCCc-------cc
Confidence 554333 22334556666666554 455666677777777762 4445555567789999999997652 13
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCC
Q 000326 248 TPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSG 289 (1661)
Q Consensus 248 ~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~ 289 (1661)
...+..++-++|.++.. ...+..+..+++++.|.+||+.+-
T Consensus 563 ddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~Q 603 (791)
T KOG1222|consen 563 DDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQ 603 (791)
T ss_pred hhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhc
Confidence 45677777777776654 555666777999999999998654
No 79
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.67 E-value=1.3 Score=56.29 Aligned_cols=335 Identities=18% Similarity=0.132 Sum_probs=192.9
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000326 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1661)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~ 91 (1661)
.-+..+++.+... .+++|.....+|..+..+... .....+.+.+.++|... ...-+.-|++.+..+..+..
T Consensus 96 ~~~~~~~~~~~tp-s~~~q~~~~~~l~~~~~~~~~-----~~~~~~l~~l~~ll~~~-~~~~~~~aa~~~ag~v~g~~-- 166 (569)
T KOG1242|consen 96 SIIEILLEELDTP-SKSVQRAVSTCLPPLVVLSKG-----LSGEYVLELLLELLTST-KIAERAGAAYGLAGLVNGLG-- 166 (569)
T ss_pred HHHHHHHHhcCCC-cHHHHHHHHHHhhhHHHHhhc-----cCHHHHHHHHHHHhccc-cHHHHhhhhHHHHHHHcCcH--
Confidence 3455666666655 789999999999888887643 34566788899999855 46778899999999987763
Q ss_pred hhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhc---cCChHHHHH---HHHHHHH
Q 000326 92 CAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLD---FFSTGVQRV---ALSTAAN 165 (1661)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd---~~~~~vqr~---Al~aLsN 165 (1661)
.....+.+.+-.|-.....-.+..-+|.++.+.+..+..-+ .-.+-+.++.+-.+|+ .+...+++. |+.++.+
T Consensus 167 i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg-~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~ 245 (569)
T KOG1242|consen 167 IESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG-PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMR 245 (569)
T ss_pred HhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC-CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 44566778888887444444444444445555444443322 2222333344444444 334445444 4444444
Q ss_pred hccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCC
Q 000326 166 MCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQAS 245 (1661)
Q Consensus 166 lc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~ 245 (1661)
+... ..++..+|.+..-+...-=.-...++..+..+++. .+.++.... ..++|.+.+.|...
T Consensus 246 ~~~~------~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~---ap~qLs~~l-p~iiP~lsevl~DT-------- 307 (569)
T KOG1242|consen 246 CLSA------YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADC---APKQLSLCL-PDLIPVLSEVLWDT-------- 307 (569)
T ss_pred hcCc------chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHh---chHHHHHHH-hHhhHHHHHHHccC--------
Confidence 4321 23556666665554433324455666777777774 566655544 67999999999876
Q ss_pred CChhHHHHHHHHHHHHhcCC--HHHHHHHHHcCChHHHHHhhcCCCcccccc---cc--cccCCCHHHHHHHHHHhcccC
Q 000326 246 LSTPTYTGLIRLLSTCASGS--PLCAKTLLHLGISGILKDILSGSGVSANSA---VP--PALSRPAEQIFEIVNLANELL 318 (1661)
Q Consensus 246 ~s~~i~~~alr~L~nLas~s--~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~---~s--~i~~~~~~qi~~vi~li~~LL 318 (1661)
.+.++..+..+|..+++.. +++ + -+++.|.+.+..+....-.+ +. ..++-=...-. +-++
T Consensus 308 -~~evr~a~~~~l~~~~svidN~dI-~-----~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psL------almv 374 (569)
T KOG1242|consen 308 -KPEVRKAGIETLLKFGSVIDNPDI-Q-----KIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSL------ALMV 374 (569)
T ss_pred -CHHHHHHHHHHHHHHHHhhccHHH-H-----HHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhH------HHHH
Confidence 5789999999999988752 221 1 13456666666544110000 00 00000000001 1112
Q ss_pred CCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCcchhhhHHHhhccCHHHHHHHHHHHHHHHHHHHhccCChH
Q 000326 319 PPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSP 398 (1661)
Q Consensus 319 P~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~f~~~l~p~Li~vy~ss~~~~ 398 (1661)
|.|.++. -++.. +.+ .......+.+..+ ..+|..+..|+-.|+|-|-.+..-. .+.
T Consensus 375 piL~R~l--------------~eRst----~~k----r~t~~IidNm~~L-veDp~~lapfl~~Llp~lk~~~~d~-~PE 430 (569)
T KOG1242|consen 375 PILKRGL--------------AERST----SIK----RKTAIIIDNMCKL-VEDPKDLAPFLPSLLPGLKENLDDA-VPE 430 (569)
T ss_pred HHHHHHH--------------hhccc----hhh----hhHHHHHHHHHHh-hcCHHHHhhhHHHHhhHHHHHhcCC-Chh
Confidence 2221211 00000 000 0001122333333 4567778899999999999998755 999
Q ss_pred HHHHHHHHHHHHh
Q 000326 399 VRHKCLSVIGKLM 411 (1661)
Q Consensus 399 VR~~~L~~i~r~v 411 (1661)
||.-..+++..++
T Consensus 431 vR~vaarAL~~l~ 443 (569)
T KOG1242|consen 431 VRAVAARALGALL 443 (569)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999996655
No 80
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.83 Score=58.38 Aligned_cols=70 Identities=19% Similarity=0.245 Sum_probs=34.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch
Q 000326 15 KKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC 92 (1661)
Q Consensus 15 ~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~ 92 (1661)
+.++..|++. -|+++..|+-.|-++...-.+ .+ ....|+|++=|.+++ |.+|..|.-+++-|+.-+|.+.
T Consensus 147 ~Dv~tLL~ss-kpYvRKkAIl~lykvFLkYPe-Al-----r~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPkny 216 (877)
T KOG1059|consen 147 DDVFTLLNSS-KPYVRKKAILLLYKVFLKYPE-AL-----RPCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNY 216 (877)
T ss_pred HHHHHHHhcC-chHHHHHHHHHHHHHHHhhhH-hH-----hhhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCccc
Confidence 4455555554 555555555555555554422 11 112455555555443 5555555555555555555443
No 81
>PF05536 Neurochondrin: Neurochondrin
Probab=96.66 E-value=0.1 Score=67.38 Aligned_cols=241 Identities=20% Similarity=0.215 Sum_probs=159.8
Q ss_pred HHhcCCcHHHHHHHHHHHHHhhccCcc------hhhhcCchHHHHhhhcc-------CChHHHHHHHHHHHHhccCCCCc
Q 000326 107 RLLTIEYMDLAEQSLQALKKISQEHPT------ACLRAGALMAVLSYLDF-------FSTGVQRVALSTAANMCKKLPSD 173 (1661)
Q Consensus 107 kLL~~~~~dl~Eqal~aL~nIS~~~~~------~Il~~GgL~~LL~lLd~-------~~~~vqr~Al~aLsNlc~~~~~~ 173 (1661)
+||......=+--++-.+.++....+. .|.++=|..-+-.+|.. .....+.-|+.+++-+|+...-.
T Consensus 12 ~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~~a 91 (543)
T PF05536_consen 12 SLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPELA 91 (543)
T ss_pred HHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChhhh
Confidence 555555543444455555555543331 35566566666666654 34567778999999999954433
Q ss_pred hhHHHhCcHHHHHHhhccCCH-HHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHH
Q 000326 174 AADFVMEAVPLLTNLLQYHDA-KVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYT 252 (1661)
Q Consensus 174 ~~~~v~~~lp~L~~lL~~~D~-~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~ 252 (1661)
.-..+.+-+|.|+.++.+.+. .++.+|+.||..|+. .++-.+.+++.|.++.|++.+.+. +....
T Consensus 92 ~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias----~~~G~~aLl~~g~v~~L~ei~~~~----------~~~~E 157 (543)
T PF05536_consen 92 SSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS----SPEGAKALLESGAVPALCEIIPNQ----------SFQME 157 (543)
T ss_pred cCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc----CcHhHHHHHhcCCHHHHHHHHHhC----------cchHH
Confidence 345577889999999887766 999999999999995 899999999999999999999774 34677
Q ss_pred HHHHHHHHHhcCCHHHHHH---HHHcCChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhcccCCCCCCCCCCCC
Q 000326 253 GLIRLLSTCASGSPLCAKT---LLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLP 329 (1661)
Q Consensus 253 ~alr~L~nLas~s~~~t~~---Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~~~~ 329 (1661)
.++.+|.++++......-. -.-..++..|...+... ....-.+++.++..+||..+....-
T Consensus 158 ~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~--------------~~~~kfell~~L~~~L~~~~~~~~~-- 221 (543)
T PF05536_consen 158 IALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSF--------------HGEDKFELLEFLSAFLPRSPILPLE-- 221 (543)
T ss_pred HHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh--------------ccchHHHHHHHHHHhcCcCCccccc--
Confidence 8889998888754421110 00012333344433321 1223345577778888865210000
Q ss_pred ccccccccCCcccCCCCCCCCCCCCCCCCcchhhhHHHhhccCHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 000326 330 SSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGK 409 (1661)
Q Consensus 330 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~f~~~l~p~Li~vy~ss~~~~VR~~~L~~i~r 409 (1661)
. ..++ .-...+..-+.++.++-+.+.-|..+|.+...
T Consensus 222 -------------------~--------------------~~~~----~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~ 258 (543)
T PF05536_consen 222 -------------------S--------------------PPSP----KWLSDLRKGLRDILQSRLTPSQRDPALNLAAS 258 (543)
T ss_pred -------------------c--------------------CChh----hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 0 0011 12356777788889999999999999999999
Q ss_pred HhhcCCHHHHH
Q 000326 410 LMYFSSAEMIQ 420 (1661)
Q Consensus 410 ~v~~~~~~~L~ 420 (1661)
|+...-++++-
T Consensus 259 Ll~~~G~~wl~ 269 (543)
T PF05536_consen 259 LLDLLGPEWLF 269 (543)
T ss_pred HHHHhChHhhc
Confidence 99887766654
No 82
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.61 E-value=0.0021 Score=56.43 Aligned_cols=54 Identities=26% Similarity=0.301 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHH
Q 000326 154 GVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRI 207 (1661)
Q Consensus 154 ~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L 207 (1661)
.+++.|+|+|.+++...+.........++|.|..+|+.+++.|...|||||++|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 578899999999888776666667889999999999999999999999999876
No 83
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.51 E-value=0.0031 Score=51.47 Aligned_cols=39 Identities=28% Similarity=0.364 Sum_probs=33.8
Q ss_pred cchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhc
Q 000326 90 SSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQ 129 (1661)
Q Consensus 90 ~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~ 129 (1661)
+.+..+++.|+||.|+ +|+...+.+++++|+|+|.||+.
T Consensus 3 ~~~~~i~~~g~i~~L~-~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALV-ELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHH-HHHcCCCHHHHHHHHHHHHHHcC
Confidence 4566788999999999 88888899999999999999873
No 84
>PF05536 Neurochondrin: Neurochondrin
Probab=96.40 E-value=0.072 Score=68.79 Aligned_cols=196 Identities=19% Similarity=0.222 Sum_probs=130.2
Q ss_pred ccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCccc--ccccccCcHHHHHHhhcCCC-----C-HHHHHHHHHHH
Q 000326 10 QSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESL--STFSVDSFAPVLVGLLNHES-----N-PDIMLLAARAL 81 (1661)
Q Consensus 10 ~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l--~~~~~~g~vp~Lv~lL~~~~-----~-~eiq~~A~raL 81 (1661)
.+..+++.+..|++. +-..++.|+--+.+++...+.... +.+-..=..+-|-++|.... + ...+-.|.-+|
T Consensus 3 ~~~~l~~c~~lL~~~-~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL 81 (543)
T PF05536_consen 3 QSASLEKCLSLLKSA-DDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVL 81 (543)
T ss_pred chHHHHHHHHHhccC-CcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence 456789999999987 568899999999988886553222 11222112344555665421 2 34445777777
Q ss_pred HHhhccCCcchh--hhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc--hhhhcCchHHHHhhhccCChHHHH
Q 000326 82 THLCDVLPSSCA--AVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT--ACLRAGALMAVLSYLDFFSTGVQR 157 (1661)
Q Consensus 82 ~NLa~~~p~~~~--~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~--~Il~~GgL~~LL~lLd~~~~~vqr 157 (1661)
..++. .|+... .++ +-||.|++-+.......+.+.|+.+|..|+..... .+++.|+++.+...+.. ....+.
T Consensus 82 ~~f~~-~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E 157 (543)
T PF05536_consen 82 AAFCR-DPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQME 157 (543)
T ss_pred HHHcC-ChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHH
Confidence 77776 444432 355 48999995444555559999999999999954443 79999999999999887 667788
Q ss_pred HHHHHHHHhccCCCC----chhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhh
Q 000326 158 VALSTAANMCKKLPS----DAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEA 210 (1661)
Q Consensus 158 ~Al~aLsNlc~~~~~----~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~ 210 (1661)
.|+.++.+++..... .....+..+++.|............-.+|..|+++-..
T Consensus 158 ~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~ 214 (543)
T PF05536_consen 158 IALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPR 214 (543)
T ss_pred HHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCc
Confidence 899999998885442 22233344566666665554444445556666666553
No 85
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=1.3 Score=57.39 Aligned_cols=265 Identities=17% Similarity=0.201 Sum_probs=164.6
Q ss_pred hcCCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHh
Q 000326 109 LTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNL 188 (1661)
Q Consensus 109 L~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~l 188 (1661)
|.+.+.-++--|+.+|++|+... ++ -...+-+-.+|.+.++.+.++|+-|+..+-++.| ..++-+++....+
T Consensus 116 L~s~nq~vVglAL~alg~i~s~E--ma--rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P----~l~e~f~~~~~~l 187 (866)
T KOG1062|consen 116 LNSSNQYVVGLALCALGNICSPE--MA--RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP----DLVEHFVIAFRKL 187 (866)
T ss_pred ccCCCeeehHHHHHHhhccCCHH--Hh--HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc----hHHHHhhHHHHHH
Confidence 45556667778999999997532 21 1234566677888899999999999999998765 3456678888999
Q ss_pred hccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCC------CCCChhHHHHHHHHHHHHh
Q 000326 189 LQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQ------ASLSTPTYTGLIRLLSTCA 262 (1661)
Q Consensus 189 L~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~------~~~s~~i~~~alr~L~nLa 262 (1661)
|...+..|+-.++..+..||.. +++.+..+-+ +++.+|..|..-...+=+ ..-+|-++..+||+|..+-
T Consensus 188 L~ek~hGVL~~~l~l~~e~c~~---~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLG 262 (866)
T KOG1062|consen 188 LCEKHHGVLIAGLHLITELCKI---SPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILG 262 (866)
T ss_pred HhhcCCceeeeHHHHHHHHHhc---CHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhc
Confidence 9999999999999889999986 7888877776 677777776532110001 2346779999999999999
Q ss_pred cCCHHHHHHHHHcCChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhcccCCCCCCCCCCCCccccccccCCccc
Q 000326 263 SGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVR 342 (1661)
Q Consensus 263 s~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~~~~~~~~~~~~g~~~~ 342 (1661)
.++++..+.+-+ +|-++.+......|.. +.=+++++.-|..+.|.=.=.+.......+.+. +.
T Consensus 263 q~d~daSd~M~D-----iLaqvatntdsskN~G--------nAILYE~V~TI~~I~~~~~LrvlainiLgkFL~-n~--- 325 (866)
T KOG1062|consen 263 QNDADASDLMND-----ILAQVATNTDSSKNAG--------NAILYECVRTIMDIRSNSGLRVLAINILGKFLL-NR--- 325 (866)
T ss_pred CCCccHHHHHHH-----HHHHHHhcccccccch--------hHHHHHHHHHHHhccCCchHHHHHHHHHHHHhc-CC---
Confidence 998887775543 6666666554322221 123456665555444411000000000001110 00
Q ss_pred CCCCCCCCCCCCCCCCcchhhhHHHhhccCHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHhhcCCHHHH
Q 000326 343 KSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMI 419 (1661)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~f~~~l~p~Li~vy~ss~~~~VR~~~L~~i~r~v~~~~~~~L 419 (1661)
+.|-....-..-...++.+|..+++==..++-.| .-.|.+||+++|-.+++|+.-.+-..+
T Consensus 326 -----------d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL-----~DpD~SIkrralELs~~lvn~~Nv~~m 386 (866)
T KOG1062|consen 326 -----------DNNIRYVALNMLLRVVQQDPTAVQRHRSTILECL-----KDPDVSIKRRALELSYALVNESNVRVM 386 (866)
T ss_pred -----------ccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHh-----cCCcHHHHHHHHHHHHHHhccccHHHH
Confidence 0000011111223344556655544332222222 578999999999999999977776544
No 86
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.38 E-value=0.12 Score=68.83 Aligned_cols=227 Identities=16% Similarity=0.208 Sum_probs=136.6
Q ss_pred cCcHHHHHHhhcCCC----CHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHh---cCCc----HHHHHHHHHH
Q 000326 55 DSFAPVLVGLLNHES----NPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLL---TIEY----MDLAEQSLQA 123 (1661)
Q Consensus 55 ~g~vp~Lv~lL~~~~----~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL---~~~~----~dl~Eqal~a 123 (1661)
.|.+..|+.+|..-. ..++--.....|.+.+.. +.++..+++.|+|+.|+..|. .... .++.|+.+..
T Consensus 116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I 194 (802)
T PF13764_consen 116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI 194 (802)
T ss_pred CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence 355666666665321 223333445555555544 788899999999999997664 3434 7999999999
Q ss_pred HHHhhccCcc-------hhhhcC-----c---hHHHHhhhcc----CChHHHHHHHHHHHHhccCCCCchhHHHhCcHHH
Q 000326 124 LKKISQEHPT-------ACLRAG-----A---LMAVLSYLDF----FSTGVQRVALSTAANMCKKLPSDAADFVMEAVPL 184 (1661)
Q Consensus 124 L~nIS~~~~~-------~Il~~G-----g---L~~LL~lLd~----~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~ 184 (1661)
++-|..+-.. ...... . +..+|+.+.. .+..+....+.+|-+++.+.+......+.-+-|.
T Consensus 195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F~p~ 274 (802)
T PF13764_consen 195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHFKPY 274 (802)
T ss_pred HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHHh
Confidence 9999765332 111222 2 5555666553 3577888889999999987755444444444444
Q ss_pred HHHhhcc--CCHHHHHHHHHHHHHHHhhcCCCH---HHHHHHHhCCcHHHHHHhhccCCCCCC---C----CCCChhHHH
Q 000326 185 LTNLLQY--HDAKVLEHASVCLTRIAEAFASSP---DKLDELCNHGLVTQAATLISTSNSGGG---Q----ASLSTPTYT 252 (1661)
Q Consensus 185 L~~lL~~--~D~~v~e~A~~aLs~L~~~~~~~~---e~~~~li~~gll~~Lv~LL~~~~~~~~---~----~~~s~~i~~ 252 (1661)
| ++=.. .+..=-.-.+-||+.|+.+...+. ...+.+++.|++...++.|...-+... + ..++.....
T Consensus 275 l-~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp 353 (802)
T PF13764_consen 275 L-DFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLP 353 (802)
T ss_pred c-ChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcHH
Confidence 4 33111 111111234778888888865443 567888899999999998875421100 0 012233455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHh
Q 000326 253 GLIRLLSTCASGSPLCAKTLLHLGISGILKDI 284 (1661)
Q Consensus 253 ~alr~L~nLas~s~~~t~~Ll~~gil~~L~~L 284 (1661)
-+|++|.-||.+... +|.++..++++.|..|
T Consensus 354 ~iL~lL~GLa~gh~~-tQ~~~~~~~l~~lH~L 384 (802)
T PF13764_consen 354 YILRLLRGLARGHEP-TQLLIAEQLLPLLHRL 384 (802)
T ss_pred HHHHHHHHHHhcCHH-HHHHHHhhHHHHHHHh
Confidence 567777777777554 3444555555544443
No 87
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.29 E-value=0.06 Score=65.96 Aligned_cols=199 Identities=9% Similarity=0.001 Sum_probs=143.8
Q ss_pred HHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc---hhhhcCchHHHHhhhccCChH
Q 000326 78 ARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYLDFFSTG 154 (1661)
Q Consensus 78 ~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lLd~~~~~ 154 (1661)
|-||..+...-.--+.-+.++.++..|+ ++|+.+.+.+.--++-+++|.-....+ ..++.|.|..++.++...+..
T Consensus 410 ~l~LkS~SrSV~~LRTgL~d~~I~elLi-~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDda 488 (743)
T COG5369 410 VLFLKSMSRSVTFLRTGLLDYPIVELLI-DALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDA 488 (743)
T ss_pred HHHHHHhhHHHHHHHhhccccchHHHHH-HHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhh
Confidence 3344444432222233466788899999 888888877777777777777665554 588999999999999988889
Q ss_pred HHHHHHHHHHHhccCCC-CchhHHH-hCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCC----cHH
Q 000326 155 VQRVALSTAANMCKKLP-SDAADFV-MEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHG----LVT 228 (1661)
Q Consensus 155 vqr~Al~aLsNlc~~~~-~~~~~~v-~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~g----ll~ 228 (1661)
+|.+.+|.+..+.-+.. ...|..+ +-.+..++.+.+.++-.|..+++..|.|++..-..+++..+.++... +.+
T Consensus 489 Lqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk 568 (743)
T COG5369 489 LQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFK 568 (743)
T ss_pred hhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHH
Confidence 99999999998887553 3344444 45688888999999999999999999999884323333333333332 566
Q ss_pred HHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHhhc
Q 000326 229 QAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLH-LGISGILKDILS 286 (1661)
Q Consensus 229 ~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~t~~Ll~-~gil~~L~~LL~ 286 (1661)
.|++-+... ++--..+-+.+|-+++..++..-+.+++ ..++..+..+|.
T Consensus 569 ~l~~k~e~~---------np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~ 618 (743)
T COG5369 569 RLIDKYEEN---------NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILD 618 (743)
T ss_pred HHHHHHHhc---------CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHH
Confidence 677777654 3334556688999999998888888887 567777777774
No 88
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=96.28 E-value=0.0088 Score=49.30 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=37.4
Q ss_pred CHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhc
Q 000326 214 SPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCAS 263 (1661)
Q Consensus 214 ~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas 263 (1661)
++++.+.+++.|+++.|++||.+. +..++..++++|+|||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~---------~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSP---------DPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSS---------SHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCC---------CHHHHHHHHHHHHHHhC
Confidence 468899999999999999999976 68999999999999984
No 89
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=96.28 E-value=0.052 Score=65.08 Aligned_cols=176 Identities=17% Similarity=0.141 Sum_probs=121.1
Q ss_pred cchHHHHHHHhhcCCCH--HHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccC
Q 000326 11 SGRLKKILSGLRADGEE--GKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVL 88 (1661)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~--~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~ 88 (1661)
.+.+..|+..+++. +. .++++|..-|-++++.+|-+.+ ...| +..++.+-+...-++++...+..|.||...+
T Consensus 179 ~~~lD~Llrmf~aP-n~et~vRve~~rlLEq~~~aeN~d~v---a~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHS 253 (832)
T KOG3678|consen 179 DGGLDLLLRMFQAP-NLETSVRVEAARLLEQILVAENRDRV---ARIG-LGVILNLAKEREPVELARSVAGILEHMFKHS 253 (832)
T ss_pred cchHHHHHHHHhCC-chhHHHHHHHHHHHHHHHhhhhhhHH---hhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhh
Confidence 44677788888876 43 4589999999888887765443 2223 3344444444446899999999999999999
Q ss_pred CcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc----hhhhcCchHHHHhhhccCChHHHH-HHHHHH
Q 000326 89 PSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT----ACLRAGALMAVLSYLDFFSTGVQR-VALSTA 163 (1661)
Q Consensus 89 p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~----~Il~~GgL~~LL~lLd~~~~~vqr-~Al~aL 163 (1661)
.+.+..+|..|++..++ ---.-.++++...|.-||+|++-.... .+++..+-. -|-.|.|....+.| .|+-++
T Consensus 254 eet~~~Lvaa~~lD~vl-~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~E-WLF~LA~skDel~R~~AClAV 331 (832)
T KOG3678|consen 254 EETCQRLVAAGGLDAVL-YWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAE-WLFPLAFSKDELLRLHACLAV 331 (832)
T ss_pred HHHHHHHHhhcccchhe-eecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhh-hhhhhhcchHHHHHHHHHHHH
Confidence 98999999999999887 445566799999999999999876553 355544333 33444554455555 578888
Q ss_pred HHhccCCCCchhHHHhCcHHHHHHhhccCC
Q 000326 164 ANMCKKLPSDAADFVMEAVPLLTNLLQYHD 193 (1661)
Q Consensus 164 sNlc~~~~~~~~~~v~~~lp~L~~lL~~~D 193 (1661)
+-++.+.+........+.+..+-.++.+-|
T Consensus 332 ~vlat~KE~E~~VrkS~TlaLVEPlva~~D 361 (832)
T KOG3678|consen 332 AVLATNKEVEREVRKSGTLALVEPLVASLD 361 (832)
T ss_pred hhhhhhhhhhHHHhhccchhhhhhhhhccC
Confidence 888876655544444454444444444444
No 90
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=96.25 E-value=0.39 Score=62.67 Aligned_cols=220 Identities=16% Similarity=0.093 Sum_probs=142.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhh
Q 000326 58 APVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLR 137 (1661)
Q Consensus 58 vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~ 137 (1661)
+..+...|...+.|.+-..|.|+|...++..+-....... ..-..++.+.....+-++-.|+.++..-+..+.-.=..
T Consensus 451 ~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~--fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~ 528 (1005)
T KOG2274|consen 451 TIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQH--FLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQ 528 (1005)
T ss_pred HHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHHH--HHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccc
Confidence 3344445555556888888888888777654322221110 12222323444445566666777777666444434445
Q ss_pred cCchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHh-h-ccCCHHHHHHHHHHHHHHHhhcCCCH
Q 000326 138 AGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNL-L-QYHDAKVLEHASVCLTRIAEAFASSP 215 (1661)
Q Consensus 138 ~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~l-L-~~~D~~v~e~A~~aLs~L~~~~~~~~ 215 (1661)
-+.|..++++...++..+.--.+-+++-.|.-.+......-..+.|.+.++ + .++|+.|...+--++-.|+... .+-
T Consensus 529 p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~~ 607 (1005)
T KOG2274|consen 529 PMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-ANY 607 (1005)
T ss_pred hHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-Hhh
Confidence 678899999999999999999999999999977777766677789988888 4 4568988887777777776631 111
Q ss_pred HHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCC
Q 000326 216 DKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSG 289 (1661)
Q Consensus 216 e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~ 289 (1661)
...++. .+|.|++.|..+..+ .....+..++.+|..+.++.+.=.-..+-+-+.+.+.++.-++.
T Consensus 608 g~m~e~----~iPslisil~~~~~~-----~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsd 672 (1005)
T KOG2274|consen 608 GPMQER----LIPSLISVLQLNADK-----APAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSD 672 (1005)
T ss_pred cchHHH----HHHHHHHHHcCcccc-----cCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecC
Confidence 222222 589999999765311 23556777888888888765433344444555666666665544
No 91
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=95.97 E-value=0.21 Score=61.53 Aligned_cols=154 Identities=16% Similarity=0.126 Sum_probs=107.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCC-CHHHHHHHHHHHHHhhccCCcchh
Q 000326 15 KKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHES-NPDIMLLAARALTHLCDVLPSSCA 93 (1661)
Q Consensus 15 ~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~-~~eiq~~A~raL~NLa~~~p~~~~ 93 (1661)
+.+...+-++ +..++-.|.+.+|-++... ..+..+...++=--++.-|..+. +..=..+|.+.+..+++.... .
T Consensus 28 ~~i~~~lL~~-~~~vraa~yRilRy~i~d~--~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~-~- 102 (371)
T PF14664_consen 28 ERIQCMLLSD-SKEVRAAGYRILRYLISDE--ESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG-P- 102 (371)
T ss_pred HHHHHHHCCC-cHHHHHHHHHHHHHHHcCH--HHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC-c-
Confidence 3444455565 5788888888887777654 33333444343333344454332 333455888888888876321 1
Q ss_pred hhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCCCc
Q 000326 94 AVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSD 173 (1661)
Q Consensus 94 ~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~ 173 (1661)
.-+-.|+|..|+ .+.+.....++..|+.+|.-|+-.+|..+..+||+..++..+-.....+...++.++..+.......
T Consensus 103 ~~~~~~vvralv-aiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR 181 (371)
T PF14664_consen 103 KEIPRGVVRALV-AIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTR 181 (371)
T ss_pred ccCCHHHHHHHH-HHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchh
Confidence 123457888999 8888999999999999999999999999999999999999987665667788888888888655443
Q ss_pred h
Q 000326 174 A 174 (1661)
Q Consensus 174 ~ 174 (1661)
.
T Consensus 182 ~ 182 (371)
T PF14664_consen 182 K 182 (371)
T ss_pred h
Confidence 3
No 92
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.93 E-value=0.11 Score=68.98 Aligned_cols=276 Identities=17% Similarity=0.156 Sum_probs=164.7
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCC-cccc-cccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcc----
Q 000326 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTE-ESLS-TFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDV---- 87 (1661)
Q Consensus 14 l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~-~~l~-~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~---- 87 (1661)
+|-++..+.. .+..+|..|+..|+++|.+-.. ++.. .+-++=+.|.|-.++.+..+.-+...=|.||.-+|.-
T Consensus 464 lPY~v~l~~D-s~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rF 542 (1431)
T KOG1240|consen 464 LPYFVHLLMD-SEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRF 542 (1431)
T ss_pred HHHHHHHhcC-chHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHH
Confidence 3445555554 4889999999999999997654 2222 3445568899999998644344444556666665521
Q ss_pred --------------CCcc-----------hhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchH
Q 000326 88 --------------LPSS-----------CAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALM 142 (1661)
Q Consensus 88 --------------~p~~-----------~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~ 142 (1661)
.|+. .+.++ ..|..++..|+.-+.+-|+..-+..|.-+|.=..+.--..=.|+
T Consensus 543 le~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~--~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLs 620 (1431)
T KOG1240|consen 543 LELTQELRQAGMLNDPNSETAPEQNYNTELQALH--HTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILS 620 (1431)
T ss_pred HHHHHHHHhcccccCcccccccccccchHHHHHH--HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHH
Confidence 1111 01111 13666666777777767776666666666643332111112467
Q ss_pred HHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q 000326 143 AVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELC 222 (1661)
Q Consensus 143 ~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li 222 (1661)
.|+.||...+..+.-.-.-.|.-+|....... ..+..+|.|..-|....+-|+..|+.||.-|++. ..++...
T Consensus 621 hLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs--~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~-----~ll~K~~ 693 (1431)
T KOG1240|consen 621 HLITFLNDKDWRLRGAFFDSIVGVSIFVGWRS--VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKL-----GLLRKPA 693 (1431)
T ss_pred HHHHHhcCccHHHHHHHHhhccceEEEEeeee--HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHh-----cccchHH
Confidence 78888876644433333344555555333222 1244788888889999999999999999999985 2333333
Q ss_pred hCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcccccccccccCC
Q 000326 223 NHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSR 302 (1661)
Q Consensus 223 ~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~ 302 (1661)
=.++++.+.-+|.++ +.=+...++.+|..++.. ....=+.|-+.|.|...|. +
T Consensus 694 v~~i~~~v~PlL~hP---------N~WIR~~~~~iI~~~~~~---ls~advyc~l~P~irpfl~---------------~ 746 (1431)
T KOG1240|consen 694 VKDILQDVLPLLCHP---------NLWIRRAVLGIIAAIARQ---LSAADVYCKLMPLIRPFLE---------------R 746 (1431)
T ss_pred HHHHHHhhhhheeCc---------hHHHHHHHHHHHHHHHhh---hhhhhheEEeehhhHHhhh---------------c
Confidence 334666677777776 455777777777666532 1122233556666666555 2
Q ss_pred CHHHHHHHHHHhcccCCCCCCCCC
Q 000326 303 PAEQIFEIVNLANELLPPLPQGTI 326 (1661)
Q Consensus 303 ~~~qi~~vi~li~~LLP~L~~~~~ 326 (1661)
+-.||..---|+.-|.||+++.++
T Consensus 747 ~v~~i~s~~~LlsclkpPVsRsv~ 770 (1431)
T KOG1240|consen 747 PVIQIESKEVLLSCLKPPVSRSVF 770 (1431)
T ss_pred cHhhhcchHHHHHHhcCCCcHHHH
Confidence 233333333344677788877554
No 93
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=95.93 E-value=0.08 Score=68.66 Aligned_cols=224 Identities=17% Similarity=0.169 Sum_probs=135.8
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhh
Q 000326 16 KILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAV 95 (1661)
Q Consensus 16 ~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~v 95 (1661)
.|++.+.+. |.+.++.|+..|-.-|.... -.++.=....++..|+++|.+. |.|+|..|.+||+-|+.--++. .+
T Consensus 9 ~Llekmtss-DKDfRfMAtsDLm~eLqkds-i~Ld~dSe~kvv~~lLklL~D~-ngEVQnlAVKClg~lvsKvke~--~l 83 (1233)
T KOG1824|consen 9 NLLEKMTSS-DKDFRFMATSDLMTELQKDS-IKLDDDSERKVVKMLLKLLEDK-NGEVQNLAVKCLGPLVSKVKED--QL 83 (1233)
T ss_pred HHHHHccCC-CcchhhhhHHHHHHHHHhhh-hhccccchhHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHhhchHH--HH
Confidence 788888887 99999999999977776541 1122222334788999999866 7999999999999998644432 22
Q ss_pred cccccHHHHHHHHhcCCc--HHHHHHHHHHHHHhhccCc--chhhhcCchHHHHhhhc----c--CChHHHHHHHHHHHH
Q 000326 96 VHYGAVTCFVARLLTIEY--MDLAEQSLQALKKISQEHP--TACLRAGALMAVLSYLD----F--FSTGVQRVALSTAAN 165 (1661)
Q Consensus 96 V~~GaVp~Lv~kLL~~~~--~dl~Eqal~aL~nIS~~~~--~~Il~~GgL~~LL~lLd----~--~~~~vqr~Al~aLsN 165 (1661)
. -.|..||..++.... -|+. ++.....|+.-.| ..-+...++..++..|. - ....++-.++-+++-
T Consensus 84 e--~~ve~L~~~~~s~keq~rdis--si~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d 159 (1233)
T KOG1824|consen 84 E--TIVENLCSNMLSGKEQLRDIS--SIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILAD 159 (1233)
T ss_pred H--HHHHHHhhhhccchhhhccHH--HHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHH
Confidence 2 255677766555433 2332 3333344444443 22333444444444432 1 122355555555554
Q ss_pred hccCCC--CchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCC
Q 000326 166 MCKKLP--SDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQ 243 (1661)
Q Consensus 166 lc~~~~--~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~ 243 (1661)
.-.+.. -++| -..++-.+.--|++.-.-|...||.||+.++.. .+.+.... ++..|.+-|...
T Consensus 160 ~lsr~g~ll~~f--h~~il~~l~~ql~s~R~aVrKkai~~l~~la~~--~~~~ly~~-----li~~Ll~~L~~~------ 224 (1233)
T KOG1824|consen 160 VLSRFGTLLPNF--HLSILKCLLPQLQSPRLAVRKKAITALGHLASS--CNRDLYVE-----LIEHLLKGLSNR------ 224 (1233)
T ss_pred HHHhhcccCcch--HHHHHHHHhhcccChHHHHHHHHHHHHHHHHHh--cCHHHHHH-----HHHHHHhccCCC------
Confidence 443221 1122 344556666667888899999999999999985 23333333 445566666544
Q ss_pred CCCChhHHHHHHHHHHHHhcCC
Q 000326 244 ASLSTPTYTGLIRLLSTCASGS 265 (1661)
Q Consensus 244 ~~~s~~i~~~alr~L~nLas~s 265 (1661)
-++.....-+.+|+.||+.+
T Consensus 225 --~q~~~~rt~Iq~l~~i~r~a 244 (1233)
T KOG1824|consen 225 --TQMSATRTYIQCLAAICRQA 244 (1233)
T ss_pred --CchHHHHHHHHHHHHHHHHh
Confidence 25566777788888887643
No 94
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=95.90 E-value=0.1 Score=66.05 Aligned_cols=158 Identities=16% Similarity=0.104 Sum_probs=100.2
Q ss_pred ccccccCcHHHHHHhh---------cCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcC----CcHHH
Q 000326 50 STFSVDSFAPVLVGLL---------NHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTI----EYMDL 116 (1661)
Q Consensus 50 ~~~~~~g~vp~Lv~lL---------~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~----~~~dl 116 (1661)
..+.....+..|.++= ....++++..+|.+||.|++-.++......++.|..+.+|.+|-.. ...|+
T Consensus 16 ~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~ 95 (446)
T PF10165_consen 16 DPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDV 95 (446)
T ss_pred hhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhH
Confidence 4455555566666554 3334688999999999999999999999999999999999655554 15677
Q ss_pred HHHHHHHHHHhhccCcc----hhhhcCchHHHHhhhcc----C-------------ChHHHHHHHHHHHHhccCCCCc--
Q 000326 117 AEQSLQALKKISQEHPT----ACLRAGALMAVLSYLDF----F-------------STGVQRVALSTAANMCKKLPSD-- 173 (1661)
Q Consensus 117 ~Eqal~aL~nIS~~~~~----~Il~~GgL~~LL~lLd~----~-------------~~~vqr~Al~aLsNlc~~~~~~-- 173 (1661)
.--....|--++..... .+-+.+++..++..|.. . ...+...++.++.|+....+..
T Consensus 96 ~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~ 175 (446)
T PF10165_consen 96 EFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP 175 (446)
T ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc
Confidence 76677777766655553 24455788888777631 0 2234456788888887644332
Q ss_pred --hhHHHhCcHHHHHHhh---ccC--CHHHHHHHHHHHHHH
Q 000326 174 --AADFVMEAVPLLTNLL---QYH--DAKVLEHASVCLTRI 207 (1661)
Q Consensus 174 --~~~~v~~~lp~L~~lL---~~~--D~~v~e~A~~aLs~L 207 (1661)
....+..++++|..+| ... -......+..+|.++
T Consensus 176 ~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nl 216 (446)
T PF10165_consen 176 EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNL 216 (446)
T ss_pred hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCC
Confidence 2223344455555552 111 134555555555555
No 95
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=95.83 E-value=0.15 Score=63.40 Aligned_cols=262 Identities=14% Similarity=0.171 Sum_probs=158.2
Q ss_pred cHHHHHHHHhcCCcHHHHHHHHHHHHHhhcc---Ccc--hhhhcCchHHHHhhhccCChHHHHH---HHHHHHHhccCCC
Q 000326 100 AVTCFVARLLTIEYMDLAEQSLQALKKISQE---HPT--ACLRAGALMAVLSYLDFFSTGVQRV---ALSTAANMCKKLP 171 (1661)
Q Consensus 100 aVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~---~~~--~Il~~GgL~~LL~lLd~~~~~vqr~---Al~aLsNlc~~~~ 171 (1661)
+|..++ ++|.+..++++++|+...+.|+.- +.. .+-..|. .|...|+...+++.-. |+.++.|.-+-..
T Consensus 605 ivStiL-~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 605 IVSTIL-KLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHH-HHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence 466777 899999999999999999888641 221 2222222 2344555556665554 4444444443211
Q ss_pred CchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHH
Q 000326 172 SDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTY 251 (1661)
Q Consensus 172 ~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~ 251 (1661)
.. .-+.+++|.|..+|.+..++|+.+....+..||.. .++.+..-----++-.|+++|.+. +.++.
T Consensus 682 mq--pPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~---~peyi~~rEWMRIcfeLvd~Lks~---------nKeiR 747 (975)
T COG5181 682 MQ--PPISGILPSLTPILRNKHQKVVANTIALVGTICMN---SPEYIGVREWMRICFELVDSLKSW---------NKEIR 747 (975)
T ss_pred cC--CchhhccccccHhhhhhhHHHhhhHHHHHHHHHhc---CcccCCHHHHHHHHHHHHHHHHHh---------hHHHH
Confidence 11 12678999999999999999999999999999997 666443332234677788888765 57788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhcccCCCCCCCCCCCCcc
Q 000326 252 TGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSS 331 (1661)
Q Consensus 252 ~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~~~~~~ 331 (1661)
..|...++.|+..= |--++|..||++-+. ...|..-+..+--+
T Consensus 748 R~A~~tfG~Is~ai----------GPqdvL~~LlnnLkv------------qeRq~RvctsvaI~--------------- 790 (975)
T COG5181 748 RNATETFGCISRAI----------GPQDVLDILLNNLKV------------QERQQRVCTSVAIS--------------- 790 (975)
T ss_pred HhhhhhhhhHHhhc----------CHHHHHHHHHhcchH------------HHHHhhhhhhhhhh---------------
Confidence 88988888887531 111122233332111 00010000000000
Q ss_pred ccccccCCcccCCCCCCCCCCCCCCCCcchhhhHHHhhccCHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHh
Q 000326 332 SNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLM 411 (1661)
Q Consensus 332 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~f~~~l~p~Li~vy~ss~~~~VR~~~L~~i~r~v 411 (1661)
++.+-... -.++|+|+.-|. |....|.+.+|.++.-|.
T Consensus 791 ------------------------------------iVae~cgp-----fsVlP~lm~dY~-TPe~nVQnGvLkam~fmF 828 (975)
T COG5181 791 ------------------------------------IVAEYCGP-----FSVLPTLMSDYE-TPEANVQNGVLKAMCFMF 828 (975)
T ss_pred ------------------------------------hhHhhcCc-----hhhHHHHHhccc-CchhHHHHhHHHHHHHHH
Confidence 00000000 267899999887 777779999999999998
Q ss_pred hcCCHHHHHHHhhhcchHHHHHHHhhcCCCchHHhHHHHHHHHHhhCch
Q 000326 412 YFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPG 460 (1661)
Q Consensus 412 ~~~~~~~L~~~l~~~~~ss~la~il~~~d~~l~~~aL~i~~~Ll~K~pd 460 (1661)
.|.-...++-+ ..+--+|+-.|.-+|+.--..|...+..|.-..|.
T Consensus 829 eyig~~s~dYv---y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~g 874 (975)
T COG5181 829 EYIGQASLDYV---YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPG 874 (975)
T ss_pred HHHHHHHHHHH---HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCC
Confidence 87665544433 24445566666667766555666666666555543
No 96
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.79 E-value=0.8 Score=60.57 Aligned_cols=335 Identities=14% Similarity=0.156 Sum_probs=180.2
Q ss_pred CcHHHHHHhhc------CCC-CHHHHHHHHHHHHHhhccCCcchh--hhcccccHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 000326 56 SFAPVLVGLLN------HES-NPDIMLLAARALTHLCDVLPSSCA--AVVHYGAVTCFVARLLTIEYMDLAEQSLQALKK 126 (1661)
Q Consensus 56 g~vp~Lv~lL~------~~~-~~eiq~~A~raL~NLa~~~p~~~~--~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~n 126 (1661)
++++-++++|. .+. ++.-..-|.+++++|++....... ..++.=.++.+. -.+.+++-=++-+|+|+|..
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVf-P~f~s~~g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVF-PEFQSPYGYLRARACWVLSQ 488 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhh-HhhcCchhHHHHHHHHHHHH
Confidence 46778888887 222 344445788899998864432221 222222233333 34568888999999999999
Q ss_pred hh-ccCcchhhhcCchHHHHhhhc-cCChHHHHHHHHHHHHhccCCCCch---hHHHhCcHHHHHHhhccCCHHHHHHHH
Q 000326 127 IS-QEHPTACLRAGALMAVLSYLD-FFSTGVQRVALSTAANMCKKLPSDA---ADFVMEAVPLLTNLLQYHDAKVLEHAS 201 (1661)
Q Consensus 127 IS-~~~~~~Il~~GgL~~LL~lLd-~~~~~vqr~Al~aLsNlc~~~~~~~---~~~v~~~lp~L~~lL~~~D~~v~e~A~ 201 (1661)
+| .+-.+..+-..++......|. .....++-.|+-++.-+..+.+..+ ..++.+++.-|..+.+..+.+.+..+.
T Consensus 489 ~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vm 568 (1010)
T KOG1991|consen 489 FSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVM 568 (1010)
T ss_pred HHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHH
Confidence 99 566665444556777777776 6677788888888887777554332 234555666666666665655554443
Q ss_pred HHHHHHHhhcCCCHHHHHHHH---hCCcHHHHHHhhccCCCCCCCCCCChhHH---HHHHHHHHHHhcCCHHHHHHH--H
Q 000326 202 VCLTRIAEAFASSPDKLDELC---NHGLVTQAATLISTSNSGGGQASLSTPTY---TGLIRLLSTCASGSPLCAKTL--L 273 (1661)
Q Consensus 202 ~aLs~L~~~~~~~~e~~~~li---~~gll~~Lv~LL~~~~~~~~~~~~s~~i~---~~alr~L~nLas~s~~~t~~L--l 273 (1661)
- .|+..| .+.+..+. -..+.....+++...+. ....+..-. ..+|+++..|...=++.-+.+ +
T Consensus 569 e---~iV~~f---seElsPfA~eL~q~La~~F~k~l~~~~~---~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~l 639 (1010)
T KOG1991|consen 569 E---KIVCKF---SEELSPFAVELCQNLAETFLKVLQTSED---EDESDDDKAIAASGILRTISTILLSLENHPEVLKQL 639 (1010)
T ss_pred H---HHHHHH---HHhhchhHHHHHHHHHHHHHHHHhccCC---CCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 3 334432 12222221 11244455556654110 001122222 233333333332211111111 1
Q ss_pred HcCChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhcccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCC
Q 000326 274 HLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQD 353 (1661)
Q Consensus 274 ~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 353 (1661)
+..+++++..+|++.. .+-..++.+++.++-=
T Consensus 640 e~~~l~vi~~iL~~~i--------------~dfyeE~~ei~~~~t~---------------------------------- 671 (1010)
T KOG1991|consen 640 EPIVLPVIGFILKNDI--------------TDFYEELLEIVSSLTF---------------------------------- 671 (1010)
T ss_pred HHHHHHHHHHHHHHhh--------------HHHHHHHHHHHhhhhh----------------------------------
Confidence 2334444544444211 0111222221111000
Q ss_pred CCCCCcchhhhHHHhhcc-CHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHhhcCCHHHHHHHhhhcchHHHH
Q 000326 354 DTNGNASEVSAREKLLSD-QPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFL 432 (1661)
Q Consensus 354 ~~~~~~~~~~~r~~~~~~-~~e~~~~f~~~l~p~Li~vy~ss~~~~VR~~~L~~i~r~v~~~~~~~L~~~l~~~~~ss~l 432 (1661)
+.++ .|++ =.|||++++++.-.. ..-=-...-++.+.|.+-.++.+........+...+
T Consensus 672 --------------~~~~Isp~m-----W~ll~li~e~~~~~~-~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~ 731 (1010)
T KOG1991|consen 672 --------------LSKEISPIM-----WGLLELILEVFQDDG-IDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEII 731 (1010)
T ss_pred --------------hhcccCHHH-----HHHHHHHHHHHhhhh-HHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHH
Confidence 0001 2332 278888888886544 222346677888899999887777666667888888
Q ss_pred HHHhhcCC--CchHHhHHHHHHHHHh---hCchhhhhhHHh
Q 000326 433 AGVLAWKD--PHVLIPSLQIAEILME---KLPGTFSKMFVR 468 (1661)
Q Consensus 433 a~il~~~d--~~l~~~aL~i~~~Ll~---K~pd~f~~~f~R 468 (1661)
..+|.+++ ..=..+|-++.+.++. -++|-|.+.|.+
T Consensus 732 ~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~~ 772 (1010)
T KOG1991|consen 732 KKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPLFLE 772 (1010)
T ss_pred HHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHHHHH
Confidence 88888754 2334456677777663 345566666655
No 97
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.72 E-value=0.25 Score=64.92 Aligned_cols=265 Identities=17% Similarity=0.112 Sum_probs=180.2
Q ss_pred CCcccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 000326 7 SSHQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCD 86 (1661)
Q Consensus 7 ~~~~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~ 86 (1661)
.......++-.++-|-|. --++.||.=|.+.|-++. =.+.--..-|+-|-+++||++.. .|+.-.-+.+=+.|+.
T Consensus 467 ~r~PPeQLPiVLQVLLSQ---vHRlRAL~LL~RFLDlGp-WAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILA 541 (1387)
T KOG1517|consen 467 SRTPPEQLPIVLQVLLSQ---VHRLRALVLLARFLDLGP-WAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILA 541 (1387)
T ss_pred cCCChHhcchHHHHHHHH---HHHHHHHHHHHHHhccch-hhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHh
Confidence 345667888888888876 678899999999999873 12233345588999999999874 7888777777788888
Q ss_pred cCCcchhhhcccccHHHHHHHHhcCCc--HHHHHHHHHHHHHhhccCcc---hhhhcCchHHHHhhhccCChHHHHH-HH
Q 000326 87 VLPSSCAAVVHYGAVTCFVARLLTIEY--MDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYLDFFSTGVQRV-AL 160 (1661)
Q Consensus 87 ~~p~~~~~vV~~GaVp~Lv~kLL~~~~--~dl~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lLd~~~~~vqr~-Al 160 (1661)
..+.+-..+|+.++-..+++.|-.+++ ++-+-.|+.+|.-|.+..+. .+++.+.|..|+..|......+.|. ++
T Consensus 542 vD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~ 621 (1387)
T KOG1517|consen 542 VDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLC 621 (1387)
T ss_pred cCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHH
Confidence 888777677766655555533333243 46777889999999988763 7999999999999998754444444 66
Q ss_pred HHHHHhccCCCCchhHHHh-CcHHHHHHhhccCCHHHHHHHHHHHHHHHhh----cCCCHHHHHHHHh--------CCcH
Q 000326 161 STAANMCKKLPSDAADFVM-EAVPLLTNLLQYHDAKVLEHASVCLTRIAEA----FASSPDKLDELCN--------HGLV 227 (1661)
Q Consensus 161 ~aLsNlc~~~~~~~~~~v~-~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~----~~~~~e~~~~li~--------~gll 227 (1661)
-||..|-.+.+...+..++ .+...|..+|..+-++|...|..||..+..+ |...-..++..+. ...+
T Consensus 622 icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i 701 (1387)
T KOG1517|consen 622 ICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLI 701 (1387)
T ss_pred HHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHH
Confidence 6777777666666655554 4788999999989999999999999999886 3222223322222 1112
Q ss_pred H----HHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhh
Q 000326 228 T----QAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDIL 285 (1661)
Q Consensus 228 ~----~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL 285 (1661)
. .++.+++.. ++-+...+.-+|+.++.+...+...+.-...++-...|.
T Consensus 702 ~~~~~~ll~~vsdg---------splvr~ev~v~ls~~~~g~~~~~~~va~n~~~~~~~~lE 754 (1387)
T KOG1517|consen 702 IKGLMSLLALVSDG---------SPLVRTEVVVALSHFVVGYVSHLKVVAGNYLLPESSSLE 754 (1387)
T ss_pred HhhHHHHHHHHhcc---------chHHHHHHHHHHHHHHHhhHHHhHHHhhhhcccchhhhh
Confidence 2 333334332 445666666677777777666555544444444443333
No 98
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.68 E-value=0.064 Score=61.53 Aligned_cols=193 Identities=17% Similarity=0.112 Sum_probs=120.0
Q ss_pred cCCCCHHHHHHHHHHHHHhhccC--Ccchhhhccc--ccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcch--hhhcC
Q 000326 66 NHESNPDIMLLAARALTHLCDVL--PSSCAAVVHY--GAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTA--CLRAG 139 (1661)
Q Consensus 66 ~~~~~~eiq~~A~raL~NLa~~~--p~~~~~vV~~--GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~--Il~~G 139 (1661)
..+.+-+.+.+|..-|..++.+. ......+++. ..+..++ +.+.....-|...|+.+|..|+..-... -.-..
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~-~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~ 94 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAII-KQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADI 94 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHH-H-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 34557888999999999998876 2233333220 3445666 5666666778899999999998765543 22344
Q ss_pred chHHHHhhhccCChHHHHHHHHHHHHhccCCC-CchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHH
Q 000326 140 ALMAVLSYLDFFSTGVQRVALSTAANMCKKLP-SDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKL 218 (1661)
Q Consensus 140 gL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~-~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~ 218 (1661)
.++.|+..+......+...|..++..+|...+ .... .++.+...+.+.++.+...++.++..+...+..+...+
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 67888888888788888899999999998765 2221 27788888999999999999999999998743112222
Q ss_pred HHHH-hCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHH
Q 000326 219 DELC-NHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLL 273 (1661)
Q Consensus 219 ~~li-~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~t~~Ll 273 (1661)
+.-. -..+++.+..+|... ++++...+-.++..+...-++.+..++
T Consensus 170 ~~~~~~~~l~~~l~~~l~D~---------~~~VR~~Ar~~~~~l~~~~~~~a~~~~ 216 (228)
T PF12348_consen 170 QKSAFLKQLVKALVKLLSDA---------DPEVREAARECLWALYSHFPERAESIL 216 (228)
T ss_dssp --HHHHHHHHHHHHHHHTSS----------HHHHHHHHHHHHHHHHHH-HHH----
T ss_pred cccchHHHHHHHHHHHCCCC---------CHHHHHHHHHHHHHHHHHCCHhhccch
Confidence 2211 134677888888776 688999999999999877777776665
No 99
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=95.64 E-value=0.28 Score=61.18 Aligned_cols=151 Identities=16% Similarity=0.031 Sum_probs=116.4
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhh
Q 000326 57 FAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACL 136 (1661)
Q Consensus 57 ~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il 136 (1661)
.++.|+..|...+.+++...|+++|.-.- .+ .++..|+ ..+......++..++.+|+.|-.
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~--~~---------~~~~~L~-~~L~d~~~~vr~aaa~ALg~i~~------- 115 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQE--DA---------LDLRSVL-AVLQAGPEGLCAGIQAALGWLGG------- 115 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhccC--Ch---------HHHHHHH-HHhcCCCHHHHHHHHHHHhcCCc-------
Confidence 68889999965556888877777764221 11 1478999 78888889999999999997643
Q ss_pred hcCchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHH
Q 000326 137 RAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPD 216 (1661)
Q Consensus 137 ~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e 216 (1661)
......|+.+|+..++.+++.++.++.. ...+..+.|..+|++.|+.|...|+.+|.+|...
T Consensus 116 -~~a~~~L~~~L~~~~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~------ 177 (410)
T TIGR02270 116 -RQAEPWLEPLLAASEPPGRAIGLAALGA-----------HRHDPGPALEAALTHEDALVRAAALRALGELPRR------ 177 (410)
T ss_pred -hHHHHHHHHHhcCCChHHHHHHHHHHHh-----------hccChHHHHHHHhcCCCHHHHHHHHHHHHhhccc------
Confidence 4567888999998899999888866665 1234567899999999999999999999998863
Q ss_pred HHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHH
Q 000326 217 KLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTC 261 (1661)
Q Consensus 217 ~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nL 261 (1661)
..++.|...+... ++.+...++..++.+
T Consensus 178 --------~a~~~L~~al~d~---------~~~VR~aA~~al~~l 205 (410)
T TIGR02270 178 --------LSESTLRLYLRDS---------DPEVRFAALEAGLLA 205 (410)
T ss_pred --------cchHHHHHHHcCC---------CHHHHHHHHHHHHHc
Confidence 4566677777665 688999999999776
No 100
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.54 E-value=3.2 Score=54.05 Aligned_cols=220 Identities=17% Similarity=0.192 Sum_probs=120.7
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhc
Q 000326 17 ILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVV 96 (1661)
Q Consensus 17 Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV 96 (1661)
|.+.|++. +..++--||..|+.+.+-+- ...+.|.+.++|++. ++-+..-|+.|+..+..-.|+....++
T Consensus 112 lknDL~s~-nq~vVglAL~alg~i~s~Em--------ardlapeVe~Ll~~~-~~~irKKA~Lca~r~irK~P~l~e~f~ 181 (866)
T KOG1062|consen 112 LKNDLNSS-NQYVVGLALCALGNICSPEM--------ARDLAPEVERLLQHR-DPYIRKKAALCAVRFIRKVPDLVEHFV 181 (866)
T ss_pred HHhhccCC-CeeehHHHHHHhhccCCHHH--------hHHhhHHHHHHHhCC-CHHHHHHHHHHHHHHHHcCchHHHHhh
Confidence 44556776 77777788888877665431 234578888888875 488888888888888777776666543
Q ss_pred cc----------c----cHHHHHHHHhcCC------cHHHHHHHHHHHHHhhccCc--c--------hhhhcCchHHHHh
Q 000326 97 HY----------G----AVTCFVARLLTIE------YMDLAEQSLQALKKISQEHP--T--------ACLRAGALMAVLS 146 (1661)
Q Consensus 97 ~~----------G----aVp~Lv~kLL~~~------~~dl~Eqal~aL~nIS~~~~--~--------~Il~~GgL~~LL~ 146 (1661)
.. | .+-.+. .|..+. +.++.++-+..|.+|....- . -.++.- |-.+|.
T Consensus 182 ~~~~~lL~ek~hGVL~~~l~l~~-e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~-iLrlLr 259 (866)
T KOG1062|consen 182 IAFRKLLCEKHHGVLIAGLHLIT-ELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIR-ILRLLR 259 (866)
T ss_pred HHHHHHHhhcCCceeeeHHHHHH-HHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHH-HHHHHH
Confidence 22 2 233222 444442 35678888888888865321 1 122221 112333
Q ss_pred hhccCChHHHHHHHHHHHHhccCCCCch---hHH-----------------HhCcHHHHHHhhccCCHHHHHHHHHHHHH
Q 000326 147 YLDFFSTGVQRVALSTAANMCKKLPSDA---ADF-----------------VMEAVPLLTNLLQYHDAKVLEHASVCLTR 206 (1661)
Q Consensus 147 lLd~~~~~vqr~Al~aLsNlc~~~~~~~---~~~-----------------v~~~lp~L~~lL~~~D~~v~e~A~~aLs~ 206 (1661)
+|-..+...-..-.-+|+.+|++.+... ..+ ..-++.+|.++|.+.|..+.--|+..|.+
T Consensus 260 iLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r 339 (866)
T KOG1062|consen 260 ILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLR 339 (866)
T ss_pred HhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHh
Confidence 4433444444444445555555332111 011 11234555555555555555555555555
Q ss_pred HHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCC
Q 000326 207 IAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGS 265 (1661)
Q Consensus 207 L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s 265 (1661)
++.. ++...+.-- ..+++.|... +..++..++..+..|+..+
T Consensus 340 ~V~~---d~~avqrHr-----~tIleCL~Dp---------D~SIkrralELs~~lvn~~ 381 (866)
T KOG1062|consen 340 VVQQ---DPTAVQRHR-----STILECLKDP---------DVSIKRRALELSYALVNES 381 (866)
T ss_pred hhcC---CcHHHHHHH-----HHHHHHhcCC---------cHHHHHHHHHHHHHHhccc
Confidence 5553 333332222 1355666555 4668888888777776654
No 101
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=95.51 E-value=0.34 Score=58.95 Aligned_cols=187 Identities=26% Similarity=0.267 Sum_probs=134.7
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch
Q 000326 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC 92 (1661)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~ 92 (1661)
.++.++..|.+. ++.+++.|...+++ +.....+|.|..+|.+. ++.++..|+.+|+.+-.
T Consensus 44 ~~~~~~~~l~~~-~~~vr~~aa~~l~~------------~~~~~av~~l~~~l~d~-~~~vr~~a~~aLg~~~~------ 103 (335)
T COG1413 44 AADELLKLLEDE-DLLVRLSAAVALGE------------LGSEEAVPLLRELLSDE-DPRVRDAAADALGELGD------ 103 (335)
T ss_pred hHHHHHHHHcCC-CHHHHHHHHHHHhh------------hchHHHHHHHHHHhcCC-CHHHHHHHHHHHHccCC------
Confidence 566777777776 88888888877532 33445699999999877 48899999998887643
Q ss_pred hhhcccccHHHHHHHHhc-CCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhccCCh------------HHHHHH
Q 000326 93 AAVVHYGAVTCFVARLLT-IEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFST------------GVQRVA 159 (1661)
Q Consensus 93 ~~vV~~GaVp~Lv~kLL~-~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~------------~vqr~A 159 (1661)
.-++|.|+ +++. ..+..++..|.++|+.+-... ++.+++..++.... .++..+
T Consensus 104 -----~~a~~~li-~~l~~d~~~~vR~~aa~aL~~~~~~~--------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 104 -----PEAVPPLV-ELLENDENEGVRAAAARALGKLGDER--------ALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred -----hhHHHHHH-HHHHcCCcHhHHHHHHHHHHhcCchh--------hhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 23788999 6666 688999999999999986533 36666666654331 233344
Q ss_pred HHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCC
Q 000326 160 LSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNS 239 (1661)
Q Consensus 160 l~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~ 239 (1661)
+..+.++- ....++.|...+...+..|...|..+|..+... . ..+...+...+...
T Consensus 170 ~~~l~~~~----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~---~---------~~~~~~l~~~~~~~-- 225 (335)
T COG1413 170 AEALGELG----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSE---N---------VEAADLLVKALSDE-- 225 (335)
T ss_pred HHHHHHcC----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcc---h---------hhHHHHHHHHhcCC--
Confidence 44444332 234688999999999999999999999999884 2 45667777878765
Q ss_pred CCCCCCCChhHHHHHHHHHHHHhcC
Q 000326 240 GGGQASLSTPTYTGLIRLLSTCASG 264 (1661)
Q Consensus 240 ~~~~~~~s~~i~~~alr~L~nLas~ 264 (1661)
+..+...++..|+.+-..
T Consensus 226 -------~~~vr~~~~~~l~~~~~~ 243 (335)
T COG1413 226 -------SLEVRKAALLALGEIGDE 243 (335)
T ss_pred -------CHHHHHHHHHHhcccCcc
Confidence 567788888888776543
No 102
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=95.46 E-value=0.87 Score=56.92 Aligned_cols=153 Identities=18% Similarity=0.033 Sum_probs=114.9
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch
Q 000326 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC 92 (1661)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~ 92 (1661)
-++.++..|..++++.+...++..+- .. +. ...+..|+..|.+. ++.+...++.+|.-|
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~---~~--~~-------~~~~~~L~~~L~d~-~~~vr~aaa~ALg~i-------- 113 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALL---AQ--ED-------ALDLRSVLAVLQAG-PEGLCAGIQAALGWL-------- 113 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHh---cc--CC-------hHHHHHHHHHhcCC-CHHHHHHHHHHHhcC--------
Confidence 46667777765546666665554441 11 11 11389999999866 477999999999753
Q ss_pred hhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCCC
Q 000326 93 AAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPS 172 (1661)
Q Consensus 93 ~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~ 172 (1661)
-...+++.|+ .++...++.++..++.+|++.-. ...+.++.+|...+..+.+.|+.++..+..
T Consensus 114 ---~~~~a~~~L~-~~L~~~~p~vR~aal~al~~r~~---------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~---- 176 (410)
T TIGR02270 114 ---GGRQAEPWLE-PLLAASEPPGRAIGLAALGAHRH---------DPGPALEAALTHEDALVRAAALRALGELPR---- 176 (410)
T ss_pred ---CchHHHHHHH-HHhcCCChHHHHHHHHHHHhhcc---------ChHHHHHHHhcCCCHHHHHHHHHHHHhhcc----
Confidence 2345788888 89999999999999988888332 235678888988999999999999998764
Q ss_pred chhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHh
Q 000326 173 DAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAE 209 (1661)
Q Consensus 173 ~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~ 209 (1661)
.+++|.|...+.+.|+.|...|.+++..+..
T Consensus 177 ------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~ 207 (410)
T TIGR02270 177 ------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS 207 (410)
T ss_pred ------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence 3467788888999999999999999977743
No 103
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.41 E-value=3.7 Score=54.34 Aligned_cols=168 Identities=16% Similarity=0.204 Sum_probs=124.1
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhccccc
Q 000326 21 LRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGA 100 (1661)
Q Consensus 21 L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~Ga 100 (1661)
|.+. +.+.+.+|+..+=.....++. ...+.|-+++... ..+.|++...=.-|-++++..|+.+.. +
T Consensus 28 l~s~-n~~~kidAmK~iIa~M~~G~d-------mssLf~dViK~~~-trd~ElKrL~ylYl~~yak~~P~~~lL-----a 93 (757)
T COG5096 28 LESS-NDYKKIDAMKKIIAQMSLGED-------MSSLFPDVIKNVA-TRDVELKRLLYLYLERYAKLKPELALL-----A 93 (757)
T ss_pred cccc-ChHHHHHHHHHHHHHHhcCCC-------hHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCHHHHHH-----H
Confidence 5554 567788887765443333322 3345777777777 457999988877888888888844333 6
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhC
Q 000326 101 VTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVME 180 (1661)
Q Consensus 101 Vp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~ 180 (1661)
|+.++ +=+..+++.++-.|+++|+.|=. ..++ ...+.++.+.+.+....+.|+|+-|+.++-+-.+ +...-.+
T Consensus 94 vNti~-kDl~d~N~~iR~~AlR~ls~l~~---~el~-~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~--~l~~~~g 166 (757)
T COG5096 94 VNTIQ-KDLQDPNEEIRGFALRTLSLLRV---KELL-GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK--DLYHELG 166 (757)
T ss_pred HHHHH-hhccCCCHHHHHHHHHHHHhcCh---HHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH--hhhhccc
Confidence 77888 77889999999999999998832 2232 3467889999999999999999999999986321 1112334
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHHHHh
Q 000326 181 AVPLLTNLLQYHDAKVLEHASVCLTRIAE 209 (1661)
Q Consensus 181 ~lp~L~~lL~~~D~~v~e~A~~aLs~L~~ 209 (1661)
.+-.+..++..+|+.|+.+|+.+|..|..
T Consensus 167 ~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 167 LIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 67888888999999999999999988876
No 104
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.37 E-value=0.35 Score=58.28 Aligned_cols=193 Identities=21% Similarity=0.190 Sum_probs=124.9
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCccccccc---ccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcc--
Q 000326 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFS---VDSFAPVLVGLLNHESNPDIMLLAARALTHLCDV-- 87 (1661)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~---~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~-- 87 (1661)
++...|+.|... ....+..||..++++|...-- ..++ ...++..+.+.++.+. .+-+..|++++.-++--
T Consensus 44 ~L~~~Id~l~eK-~~~~Re~aL~~l~~~l~~~~~---~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg 118 (309)
T PF05004_consen 44 KLKEAIDLLTEK-SSSTREAALEALIRALSSRYL---PDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLG 118 (309)
T ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcC
Confidence 477888888766 688999999999999976422 2233 2347888888898775 46777898988877654
Q ss_pred CCcchhhhcccccHHHHHHHHhcCC-cHHHHHHHHHHHHHhhcc---Ccchhhh-cCchHHHHh--hhc--cC-------
Q 000326 88 LPSSCAAVVHYGAVTCFVARLLTIE-YMDLAEQSLQALKKISQE---HPTACLR-AGALMAVLS--YLD--FF------- 151 (1661)
Q Consensus 88 ~p~~~~~vV~~GaVp~Lv~kLL~~~-~~dl~Eqal~aL~nIS~~---~~~~Il~-~GgL~~LL~--lLd--~~------- 151 (1661)
.-.....+++ .+.|.|...+.... .+.++..|+.||+.++-- ....+.. ...+..+.. ++. ..
T Consensus 119 ~g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~ 197 (309)
T PF05004_consen 119 AGEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAE 197 (309)
T ss_pred CCccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCC
Confidence 2234444443 68888884444433 467777888888887542 2222221 112222211 111 11
Q ss_pred -ChHHHHHHHHHHHHhccCCCCchh-HHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhc
Q 000326 152 -STGVQRVALSTAANMCKKLPSDAA-DFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAF 211 (1661)
Q Consensus 152 -~~~vqr~Al~aLsNlc~~~~~~~~-~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~ 211 (1661)
+..++-.|+.+-+-|....+...+ ......+|.|..+|.+.|.+|...|--+|+-|.+..
T Consensus 198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 198 DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 234666665555555554444222 445779999999999999999999999999887753
No 105
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.28 E-value=0.18 Score=63.71 Aligned_cols=205 Identities=20% Similarity=0.264 Sum_probs=128.1
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch
Q 000326 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC 92 (1661)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~ 92 (1661)
-++.++..|... -....+.+++-|+-+.... +..+ ..-...+||.|.+.|-+.+ ++++..+..||.++++.....
T Consensus 255 llpsll~~l~~~-kWrtK~aslellg~m~~~a-p~qL-s~~lp~iiP~lsevl~DT~-~evr~a~~~~l~~~~svidN~- 329 (569)
T KOG1242|consen 255 LLPSLLGSLLEA-KWRTKMASLELLGAMADCA-PKQL-SLCLPDLIPVLSEVLWDTK-PEVRKAGIETLLKFGSVIDNP- 329 (569)
T ss_pred hhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhc-hHHH-HHHHhHhhHHHHHHHccCC-HHHHHHHHHHHHHHHHhhccH-
Confidence 345556666543 4455666777776433332 2222 2333457999999998775 999999999999988643211
Q ss_pred hhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhc----cCChHHHHHHHHHHHHhcc
Q 000326 93 AAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLD----FFSTGVQRVALSTAANMCK 168 (1661)
Q Consensus 93 ~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd----~~~~~vqr~Al~aLsNlc~ 168 (1661)
. |. -.||.|++.+ ..+.- -... |+..|....--..+++-.+..++-+|. .-+..+.|.++.++-|+|+
T Consensus 330 d-I~--~~ip~Lld~l-~dp~~-~~~e---~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~ 401 (569)
T KOG1242|consen 330 D-IQ--KIIPTLLDAL-ADPSC-YTPE---CLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCK 401 (569)
T ss_pred H-HH--HHHHHHHHHh-cCccc-chHH---HHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHH
Confidence 1 11 1455555322 21111 1222 333333322223444556666666664 4577888999999999999
Q ss_pred CC--CCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccC
Q 000326 169 KL--PSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTS 237 (1661)
Q Consensus 169 ~~--~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~ 237 (1661)
-. +..-.......+|.|...+...++++..-+..||+.+.++. .+....+++|.+.+.+...
T Consensus 402 LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~-------g~~~f~d~~p~l~e~~~~~ 465 (569)
T KOG1242|consen 402 LVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERL-------GEVSFDDLIPELSETLTSE 465 (569)
T ss_pred hhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHH-------HhhcccccccHHHHhhccc
Confidence 55 33334456678888888888889999999999999888862 2222267888888888654
No 106
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=95.26 E-value=2 Score=53.17 Aligned_cols=190 Identities=15% Similarity=0.130 Sum_probs=131.3
Q ss_pred HHHHHHHHhcCCCccc-ccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCC
Q 000326 34 LTQLCEMLSIGTEESL-STFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIE 112 (1661)
Q Consensus 34 l~~L~~lL~~~~~~~l-~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~ 112 (1661)
+..|++++... +.+ ..+.-..+.+.+..+|-+++ .++.-.|-|++.++.... +....+++.+ ++.|+-+=+..+
T Consensus 4 ~N~Lv~l~~~~--p~l~~~~~~~~~~~~i~~~lL~~~-~~vraa~yRilRy~i~d~-~~l~~~~~l~-id~~ii~SL~~~ 78 (371)
T PF14664_consen 4 ANDLVDLLKRH--PTLKYDLVLSFFGERIQCMLLSDS-KEVRAAGYRILRYLISDE-ESLQILLKLH-IDIFIIRSLDRD 78 (371)
T ss_pred HHHHHHHHHhC--chhhhhhhHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHcCH-HHHHHHHHcC-CchhhHhhhccc
Confidence 45666666653 222 23334445666665555554 899999999999998754 5666666666 444443445443
Q ss_pred --cHHHHHHHHHHHHHhhccCcc-hhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhh
Q 000326 113 --YMDLAEQSLQALKKISQEHPT-ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLL 189 (1661)
Q Consensus 113 --~~dl~Eqal~aL~nIS~~~~~-~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL 189 (1661)
+..=+|||+.-+..+..-... .-+-.|.+.+++......+....+.|+.+++-+|-..| +...-.+.+..|.+.+
T Consensus 79 ~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l 156 (371)
T PF14664_consen 79 NKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRAL 156 (371)
T ss_pred CCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHH
Confidence 334477999999888765322 34567888999999999889999999999999998653 4445678889999887
Q ss_pred ccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhh
Q 000326 190 QYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLI 234 (1661)
Q Consensus 190 ~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL 234 (1661)
.....++.+..+.++.++.+ .|...+.+...--+..++.-+
T Consensus 157 ~d~~~~~~~~l~~~lL~lLd----~p~tR~yl~~~~dL~~l~apf 197 (371)
T PF14664_consen 157 IDGSFSISESLLDTLLYLLD----SPRTRKYLRPGFDLESLLAPF 197 (371)
T ss_pred HhccHhHHHHHHHHHHHHhC----CcchhhhhcCCccHHHHHHhh
Confidence 76655699999999999999 666666555432344444444
No 107
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=95.13 E-value=1 Score=57.19 Aligned_cols=232 Identities=18% Similarity=0.165 Sum_probs=151.3
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCC----CCHHHHHHHHHHHHHhhccCCcchhhhc-cc
Q 000326 24 DGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHE----SNPDIMLLAARALTHLCDVLPSSCAAVV-HY 98 (1661)
Q Consensus 24 ~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~----~~~eiq~~A~raL~NLa~~~p~~~~~vV-~~ 98 (1661)
..++.+..+|+++||+++.... .....+...|+.+.+++.|+.. .+.++++..+|.|--++...+.....++ ++
T Consensus 43 ~~~~~v~~EALKCL~N~lf~s~-~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~ 121 (446)
T PF10165_consen 43 SPDPDVSREALKCLCNALFLSP-SARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEH 121 (446)
T ss_pred CCChHHHHHHHHHHHHHHhCCH-HHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHh
Confidence 3488999999999999999752 3335688889999999999865 2589999999999888887777776666 44
Q ss_pred ccHHHHHHHHhcC----------------CcHHHHHHHHHHHHHhhccCcchh--hhcCchHHHHhhhccC---------
Q 000326 99 GAVTCFVARLLTI----------------EYMDLAEQSLQALKKISQEHPTAC--LRAGALMAVLSYLDFF--------- 151 (1661)
Q Consensus 99 GaVp~Lv~kLL~~----------------~~~dl~Eqal~aL~nIS~~~~~~I--l~~GgL~~LL~lLd~~--------- 151 (1661)
+++..|++.|-.+ ...++.-.++.+|-||....+... .....++.++.+|...
T Consensus 122 ~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~ 201 (446)
T PF10165_consen 122 HGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPP 201 (446)
T ss_pred hhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCc
Confidence 6666666433211 145667789999999988877644 3556666666655321
Q ss_pred ChHHHHHHHHHHHHhccCC----------------CCchhHHHhCcHHHHHHhhccC-C---HHHHHHHHHHHHHHHhhc
Q 000326 152 STGVQRVALSTAANMCKKL----------------PSDAADFVMEAVPLLTNLLQYH-D---AKVLEHASVCLTRIAEAF 211 (1661)
Q Consensus 152 ~~~vqr~Al~aLsNlc~~~----------------~~~~~~~v~~~lp~L~~lL~~~-D---~~v~e~A~~aLs~L~~~~ 211 (1661)
.......++.++.|+-... ...+...+...+.+|-..|... + .+.+.-.+.+|.+++..
T Consensus 202 l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~- 280 (446)
T PF10165_consen 202 LDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARA- 280 (446)
T ss_pred chhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHh-
Confidence 2356677888888873210 0122222333333333333332 2 35677777888888885
Q ss_pred CCCHHHHHHHHh----------------CCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHH
Q 000326 212 ASSPDKLDELCN----------------HGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLC 268 (1661)
Q Consensus 212 ~~~~e~~~~li~----------------~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~ 268 (1661)
+......+-. ..+-.+|++|+.+. .+.+...+...|-.||..+...
T Consensus 281 --~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~---------~~~~k~~vaellf~Lc~~d~~~ 342 (446)
T PF10165_consen 281 --AREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP---------DPQLKDAVAELLFVLCKEDASR 342 (446)
T ss_pred --cHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC---------CchHHHHHHHHHHHHHhhhHHH
Confidence 3332222221 24777888888775 2557777777777887665443
No 108
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=95.10 E-value=0.43 Score=59.56 Aligned_cols=250 Identities=15% Similarity=0.180 Sum_probs=151.9
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHH---HHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHH---HHHHHHHHHhhc
Q 000326 13 RLKKILSGLRADGEEGKQVEALTQ---LCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIM---LLAARALTHLCD 86 (1661)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~---L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq---~~A~raL~NLa~ 86 (1661)
-+-.++..|++. -|..+..|+.- |..+|..+.+... +-..| -.|.+-|. ++.||+. +.|..||++...
T Consensus 605 ivStiL~~L~~k-~p~vR~~aadl~~sl~~vlk~c~e~~~--l~klg--~iLyE~lg-e~ypEvLgsil~Ai~~I~sv~~ 678 (975)
T COG5181 605 IVSTILKLLRSK-PPDVRIRAADLMGSLAKVLKACGETKE--LAKLG--NILYENLG-EDYPEVLGSILKAICSIYSVHR 678 (975)
T ss_pred HHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHhcchHHH--HHHHh--HHHHHhcC-cccHHHHHHHHHHHHHHhhhhc
Confidence 456677888886 77777777554 4445555543211 11111 12445554 3457764 456666666654
Q ss_pred cCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHH---hhhccCChHHHHHHHHHH
Q 000326 87 VLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVL---SYLDFFSTGVQRVALSTA 163 (1661)
Q Consensus 87 ~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL---~lLd~~~~~vqr~Al~aL 163 (1661)
... .+.- -.|++|.|. -.|......+.+..+..++.||...+..|---.=+..|. ..|...+.++.|+|..++
T Consensus 679 ~~~--mqpP-i~~ilP~lt-PILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tf 754 (975)
T COG5181 679 FRS--MQPP-ISGILPSLT-PILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETF 754 (975)
T ss_pred ccc--cCCc-hhhcccccc-HhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhh
Confidence 331 1111 247899999 888899999999999999999999887544333344444 444567889999999999
Q ss_pred HHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCC
Q 000326 164 ANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQ 243 (1661)
Q Consensus 164 sNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~ 243 (1661)
.-+++-..+. +++.+|.+-|..++.........+++-.++- .|....|--||..-..
T Consensus 755 G~Is~aiGPq------dvL~~LlnnLkvqeRq~RvctsvaI~iVae~-------------cgpfsVlP~lm~dY~T---- 811 (975)
T COG5181 755 GCISRAIGPQ------DVLDILLNNLKVQERQQRVCTSVAISIVAEY-------------CGPFSVLPTLMSDYET---- 811 (975)
T ss_pred hhHHhhcCHH------HHHHHHHhcchHHHHHhhhhhhhhhhhhHhh-------------cCchhhHHHHHhcccC----
Confidence 9888755433 4677777777777665554444444444431 2333344444432210
Q ss_pred CCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCccccccccc
Q 000326 244 ASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPP 298 (1661)
Q Consensus 244 ~~~s~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~ 298 (1661)
-..+++..+|++++.+-..--+++..-+ .-+.|.|...|+..+.....+++|
T Consensus 812 --Pe~nVQnGvLkam~fmFeyig~~s~dYv-y~itPlleDAltDrD~vhRqta~n 863 (975)
T COG5181 812 --PEANVQNGVLKAMCFMFEYIGQASLDYV-YSITPLLEDALTDRDPVHRQTAMN 863 (975)
T ss_pred --chhHHHHhHHHHHHHHHHHHHHHHHHHH-HHhhHHHHhhhcccchHHHHHHHH
Confidence 1467899999999887643222222111 346788888888777644444433
No 109
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.05 E-value=1.3 Score=56.70 Aligned_cols=210 Identities=16% Similarity=0.150 Sum_probs=143.3
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhccccc
Q 000326 21 LRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGA 100 (1661)
Q Consensus 21 L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~Ga 100 (1661)
|++. +.+..=.|+..|+. ..+.+ ....+.+-++.+|++.. |-+...|.-+|+.++.-.|+.... +
T Consensus 118 l~S~-n~ye~giAL~GLS~---fvTpd-----LARDLa~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr~-----~ 182 (877)
T KOG1059|consen 118 LNSS-NVYEVGLALSGLSC---IVTPD-----LARDLADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALRP-----C 182 (877)
T ss_pred hccC-ccchhhheeccccc---ccCch-----hhHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHhh-----h
Confidence 3444 55555555555553 34333 24566888999999774 889999999999999987776664 7
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhh--------------cCchHHHHhhhccC---Ch----------
Q 000326 101 VTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLR--------------AGALMAVLSYLDFF---ST---------- 153 (1661)
Q Consensus 101 Vp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~--------------~GgL~~LL~lLd~~---~~---------- 153 (1661)
.|.|+ .=|+-+++.++-.|+.+++-+|+..|+..+. +=.|-.++.++... .+
T Consensus 183 FprL~-EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLiepl 261 (877)
T KOG1059|consen 183 FPRLV-EKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPI 261 (877)
T ss_pred HHHHH-HhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHH
Confidence 89999 5568889999999999999999998852111 11233333333211 11
Q ss_pred --HHHH-HHHHHHHHhc---------cCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHH
Q 000326 154 --GVQR-VALSTAANMC---------KKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDEL 221 (1661)
Q Consensus 154 --~vqr-~Al~aLsNlc---------~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~l 221 (1661)
.+.+ .|+..+..|. .+. .++...++-|+.-|..++..+|+.+.--+|.|++.|..- ++..+++.
T Consensus 262 t~li~sT~AmSLlYECvNTVVa~s~s~g~-~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~kt---Hp~~Vqa~ 337 (877)
T KOG1059|consen 262 TELMESTVAMSLLYECVNTVVAVSMSSGM-SDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKT---HPKAVQAH 337 (877)
T ss_pred HHHHHhhHHHHHHHHHHHHheeehhccCC-CCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhh---CHHHHHHh
Confidence 1111 1333333222 222 245567888999999999999999999999999999986 66666654
Q ss_pred HhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcC
Q 000326 222 CNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASG 264 (1661)
Q Consensus 222 i~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~ 264 (1661)
- +-+++.|... ++++...||..|.-|++-
T Consensus 338 k-----dlIlrcL~Dk---------D~SIRlrALdLl~gmVsk 366 (877)
T KOG1059|consen 338 K-----DLILRCLDDK---------DESIRLRALDLLYGMVSK 366 (877)
T ss_pred H-----HHHHHHhccC---------CchhHHHHHHHHHHHhhh
Confidence 4 3466777665 577999999998887754
No 110
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=95.03 E-value=0.088 Score=54.14 Aligned_cols=120 Identities=13% Similarity=0.006 Sum_probs=101.5
Q ss_pred ccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhc
Q 000326 50 STFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQ 129 (1661)
Q Consensus 50 ~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~ 129 (1661)
.+++..+.+..||.=++...+.+.|....--|.|.+= .|-+...+.+..++..++ .-++-++.-+.|-++-.|+|+|-
T Consensus 10 hgi~Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFv-dsl~e~ne~LvefgIgglCNlC~ 87 (173)
T KOG4646|consen 10 HGIDRLEYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFV-DSLEEQNELLVEFGIGGLCNLCL 87 (173)
T ss_pred ccCcHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHH-HHhhcccHHHHHHhHHHHHhhcc
Confidence 3566777899999888877788888876666777663 566777888999999999 67788899999999999999999
Q ss_pred cCcc--hhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCC
Q 000326 130 EHPT--ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLP 171 (1661)
Q Consensus 130 ~~~~--~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~ 171 (1661)
+..+ .|.+++|++.++..+.+..-.+.-.|+.++..+|....
T Consensus 88 d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~R 131 (173)
T KOG4646|consen 88 DKTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGER 131 (173)
T ss_pred ChHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCccc
Confidence 8775 69999999999999998888888899999999998653
No 111
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.94 E-value=0.82 Score=57.58 Aligned_cols=203 Identities=18% Similarity=0.240 Sum_probs=126.6
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHH----HHHHHHHHHHHhhc-cC
Q 000326 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPD----IMLLAARALTHLCD-VL 88 (1661)
Q Consensus 14 l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~e----iq~~A~raL~NLa~-~~ 88 (1661)
++.++.......++..+..+++.++-++....+.. ..+.++..+..-+....... .....+|+..-+.- +.
T Consensus 191 l~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~----~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~ 266 (415)
T PF12460_consen 191 LQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD----DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH 266 (415)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh----hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence 44555555555578999999999987776632221 12233444443331111222 23344455544432 22
Q ss_pred CcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcch-----------hhhc----CchHHHHhhhccCCh
Q 000326 89 PSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTA-----------CLRA----GALMAVLSYLDFFST 153 (1661)
Q Consensus 89 p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~-----------Il~~----GgL~~LL~lLd~~~~ 153 (1661)
| .... .+..|+ .++.. .++...+..+++-|..+.+.. ..+. -.++.+++.....+.
T Consensus 267 ~-~~~~-----~~~~L~-~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~ 337 (415)
T PF12460_consen 267 P-LATE-----LLDKLL-ELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADD 337 (415)
T ss_pred c-hHHH-----HHHHHH-HHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcCh
Confidence 2 1111 345566 55555 788999999999999884431 1121 245555555555555
Q ss_pred HHHHHHHHHHHHhccCCCCchh-HHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHH
Q 000326 154 GVQRVALSTAANMCKKLPSDAA-DFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAAT 232 (1661)
Q Consensus 154 ~vqr~Al~aLsNlc~~~~~~~~-~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~ 232 (1661)
..+.+.+.+++++.++.|..-. ..+..++|.|..-|..+|.+++..++.+|..+... .++.+..-++ .++++|++
T Consensus 338 ~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~---~~~~i~~hl~-sLI~~LL~ 413 (415)
T PF12460_consen 338 EIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE---APELISEHLS-SLIPRLLK 413 (415)
T ss_pred hhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc---CHHHHHHHHH-HHHHHHHh
Confidence 5777889999999998874432 33567999999999999999999999999999995 5555555443 46666655
Q ss_pred h
Q 000326 233 L 233 (1661)
Q Consensus 233 L 233 (1661)
+
T Consensus 414 l 414 (415)
T PF12460_consen 414 L 414 (415)
T ss_pred c
Confidence 3
No 112
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=94.93 E-value=0.39 Score=61.03 Aligned_cols=242 Identities=17% Similarity=0.211 Sum_probs=149.0
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHH---HhcCCCcccccccccCcHHHHHHhhcCCCCHHHH---HHHHHHHHHhhcc
Q 000326 14 LKKILSGLRADGEEGKQVEALTQLCEM---LSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIM---LLAARALTHLCDV 87 (1661)
Q Consensus 14 l~~Ll~~L~s~~D~~~ql~Al~~L~~l---L~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq---~~A~raL~NLa~~ 87 (1661)
.-.++..|++. -+.++.+|+.-++.+ +..+.+..+ +--.|+ .|.+-|..+ .||+. +-|..||+|...-
T Consensus 801 ~stiL~rLnnk-sa~vRqqaadlis~la~Vlktc~ee~~--m~~lGv--vLyEylgee-ypEvLgsILgAikaI~nvigm 874 (1172)
T KOG0213|consen 801 CSTILWRLNNK-SAKVRQQAADLISSLAKVLKTCGEEKL--MGHLGV--VLYEYLGEE-YPEVLGSILGAIKAIVNVIGM 874 (1172)
T ss_pred HHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHhccHHHH--HHHhhH--HHHHhcCcc-cHHHHHHHHHHHHHHHHhccc
Confidence 34566677776 677777777665544 444443321 112222 356677644 57764 4566666666532
Q ss_pred CCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchHHH---HhhhccCChHHHHHHHHHHH
Q 000326 88 LPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAV---LSYLDFFSTGVQRVALSTAA 164 (1661)
Q Consensus 88 ~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~L---L~lLd~~~~~vqr~Al~aLs 164 (1661)
.. -..-+ .+++|.|. -+|......++|+|+..++.||...+..|-.--=+..| |.+|......+.|.|+.++.
T Consensus 875 ~k-m~pPi--~dllPrlt-PILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG 950 (1172)
T KOG0213|consen 875 TK-MTPPI--KDLLPRLT-PILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFG 950 (1172)
T ss_pred cc-cCCCh--hhhcccch-HhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 21 11112 36889998 88889999999999999999999988754433334444 45555678899999999999
Q ss_pred HhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCC
Q 000326 165 NMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQA 244 (1661)
Q Consensus 165 Nlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~ 244 (1661)
.+++-..+. +++.+|.+-|..++.........+++-.++- .. -..++|.|++--..+
T Consensus 951 ~IakaIGPq------dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~--c~--------pFtVLPalmneYrtP------- 1007 (1172)
T KOG0213|consen 951 YIAKAIGPQ------DVLATLLNNLKVQERQNRVCTTVAIAIVAET--CG--------PFTVLPALMNEYRTP------- 1007 (1172)
T ss_pred HHHHhcCHH------HHHHHHHhcchHHHHHhchhhhhhhhhhhhh--cC--------chhhhHHHHhhccCc-------
Confidence 988755433 3577777777776655554444444444432 00 012455555544443
Q ss_pred CCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcc
Q 000326 245 SLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVS 291 (1661)
Q Consensus 245 ~~s~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~ 291 (1661)
..+++..+|++|+.+-..--+....-+ .-+.|.|...|+..+..
T Consensus 1008 --e~nVQnGVLkalsf~FeyigemskdYi-yav~PlleDAlmDrD~v 1051 (1172)
T KOG0213|consen 1008 --EANVQNGVLKALSFMFEYIGEMSKDYI-YAVTPLLEDALMDRDLV 1051 (1172)
T ss_pred --hhHHHHhHHHHHHHHHHHHHHHhhhHH-HHhhHHHHHhhccccHH
Confidence 467899999999987643222222111 23567788888776653
No 113
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.84 E-value=0.41 Score=63.04 Aligned_cols=232 Identities=15% Similarity=0.097 Sum_probs=154.1
Q ss_pred HHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHh-hccCcc--hhhhcCchHHHHhhhcc-
Q 000326 75 LLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKI-SQEHPT--ACLRAGALMAVLSYLDF- 150 (1661)
Q Consensus 75 ~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nI-S~~~~~--~Il~~GgL~~LL~lLd~- 150 (1661)
+.|...|.-..+--|-.+...+.-|+.|..+ |||+++-.+|+---+..-.+| |.|... .+++.+|-.-.+++|+.
T Consensus 488 lRAL~LL~RFLDlGpWAV~LaLsVGIFPYVL-KLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~ 566 (1387)
T KOG1517|consen 488 LRALVLLARFLDLGPWAVDLALSVGIFPYVL-KLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPS 566 (1387)
T ss_pred HHHHHHHHHHhccchhhhhhhhccchHHHHH-HHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCc
Confidence 3455566666666676667777779999999 999999999987666666676 444332 57788887777888875
Q ss_pred C--ChHHHHHHHHHHHHhccCCCCchhHHHh-CcHHHHHHhhccC-CHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCc
Q 000326 151 F--STGVQRVALSTAANMCKKLPSDAADFVM-EAVPLLTNLLQYH-DAKVLEHASVCLTRIAEAFASSPDKLDELCNHGL 226 (1661)
Q Consensus 151 ~--~~~vqr~Al~aLsNlc~~~~~~~~~~v~-~~lp~L~~lL~~~-D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gl 226 (1661)
. +.+-...|+.+|+-+|++-+.-+..... +.+-+=...|+.+ ++-+..=+|.||.+|=.. -++..-.=...++
T Consensus 567 ~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d---~~~Arw~G~r~~A 643 (1387)
T KOG1517|consen 567 QAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWED---YDEARWSGRRDNA 643 (1387)
T ss_pred CCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhh---cchhhhccccccH
Confidence 2 3334445888999999976544433333 3455445556663 677888899999999986 3333333446678
Q ss_pred HHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcC----CHHHHHHH------------HHcCChH---HHHHhhcC
Q 000326 227 VTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASG----SPLCAKTL------------LHLGISG---ILKDILSG 287 (1661)
Q Consensus 227 l~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~----s~~~t~~L------------l~~gil~---~L~~LL~~ 287 (1661)
..+|+.+|..+ .+++...++.+|+.+.++ .++++..+ ++..+.. .+..+++.
T Consensus 644 hekL~~~LsD~---------vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsd 714 (1387)
T KOG1517|consen 644 HEKLILLLSDP---------VPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSD 714 (1387)
T ss_pred HHHHHHHhcCc---------cHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhc
Confidence 99999999875 689999999999999886 56665554 3333333 22222332
Q ss_pred CCc----ccccccccccCCCHHHHHHHHHHhcccCCCC
Q 000326 288 SGV----SANSAVPPALSRPAEQIFEIVNLANELLPPL 321 (1661)
Q Consensus 288 ~~~----~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L 321 (1661)
..+ +...+++..+.|...++.-+.. ..++|..
T Consensus 715 gsplvr~ev~v~ls~~~~g~~~~~~~va~--n~~~~~~ 750 (1387)
T KOG1517|consen 715 GSPLVRTEVVVALSHFVVGYVSHLKVVAG--NYLLPES 750 (1387)
T ss_pred cchHHHHHHHHHHHHHHHhhHHHhHHHhh--hhcccch
Confidence 222 2222334446677777777666 6666644
No 114
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=94.82 E-value=0.13 Score=63.11 Aligned_cols=179 Identities=13% Similarity=0.050 Sum_probs=128.4
Q ss_pred cccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhcc
Q 000326 51 TFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQE 130 (1661)
Q Consensus 51 ~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~ 130 (1661)
++....++..|+++|..++ .-++.-+.-++.|..---..-...+++.|+|.+|+ +++.+.+..++...+|+|..+--.
T Consensus 426 gL~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~-~~v~sKDdaLqans~wvlrHlmyn 503 (743)
T COG5369 426 GLLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLV-NLVMSKDDALQANSEWVLRHLMYN 503 (743)
T ss_pred hccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHH-HHhhcchhhhhhcchhhhhhhhhc
Confidence 5666678999999998542 34445677888888766555666788999999999 888888999999999999988654
Q ss_pred Ccc----hhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCC----CchhHHHh----CcHHHHHHhhccCCHHHHH
Q 000326 131 HPT----ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLP----SDAADFVM----EAVPLLTNLLQYHDAKVLE 198 (1661)
Q Consensus 131 ~~~----~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~----~~~~~~v~----~~lp~L~~lL~~~D~~v~e 198 (1661)
+.+ ..+..-|+..++.|.....-.+|..++.++.|+.-+.. ..++.... -.+..|..-+...++--.+
T Consensus 504 cq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~ 583 (743)
T COG5369 504 CQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEIL 583 (743)
T ss_pred CcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhh
Confidence 443 57788899999999998899999999999999765221 22221111 1345566666777777777
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHhC-CcHHHHHHhh
Q 000326 199 HASVCLTRIAEAFASSPDKLDELCNH-GLVTQAATLI 234 (1661)
Q Consensus 199 ~A~~aLs~L~~~~~~~~e~~~~li~~-gll~~Lv~LL 234 (1661)
..|..|.+++.. +.+..+.+++. +++.-+-++|
T Consensus 584 ~~~yilv~~aa~---d~~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 584 EGCYILVRNAAC---DDTLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred hhHHHHHHHHhc---cchHHHHHHhHHHHHHHHHHHH
Confidence 779999998884 44444444433 3444444444
No 115
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=94.53 E-value=0.51 Score=60.76 Aligned_cols=259 Identities=14% Similarity=0.190 Sum_probs=150.1
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcc
Q 000326 18 LSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVH 97 (1661)
Q Consensus 18 l~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~ 97 (1661)
++-|... |+..+-+=+..|.+++-+-.. .+....++|.|++-|.... ++=...=++..|+++.+. ....
T Consensus 279 LD~l~~k-dn~qKs~Flk~Ls~~ip~fp~----rv~~~kiLP~L~~el~n~~---~vp~~LP~v~~i~~~~s~---~~~~ 347 (700)
T KOG2137|consen 279 LDDLPQK-DNSQKSSFLKGLSKLIPTFPA----RVLFQKILPTLVAELVNTK---MVPIVLPLVLLIAEGLSQ---NEFG 347 (700)
T ss_pred ccccccc-CcHHHHHHHHHHHHhhccCCH----HHHHHhhhhHHHHHhcccc---ccccccchhhhhhhccch---hhhh
Confidence 3444443 666666666666666554432 3445567777777775321 111111122333333221 1122
Q ss_pred cccHHHHHHHHhcC-CcHHHHHHHHHHHHHh---hccCcchhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCCCc
Q 000326 98 YGAVTCFVARLLTI-EYMDLAEQSLQALKKI---SQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSD 173 (1661)
Q Consensus 98 ~GaVp~Lv~kLL~~-~~~dl~Eqal~aL~nI---S~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~ 173 (1661)
.-.+|.|. .+++- ...++ -+-.++|+ ...-+..-+...+++.|..-++..++.+|..++.++-......+
T Consensus 348 ~~~~p~l~-pi~~~~~~~~~---~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD-- 421 (700)
T KOG2137|consen 348 PKMLPALK-PIYSASDPKQA---LLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID-- 421 (700)
T ss_pred hhhhHHHH-HHhccCCcccc---hhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--
Confidence 23456655 44442 22222 22333333 33333334445566766667777889999999999998886543
Q ss_pred hhHHH-hCcHHHHHHh-hccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHH
Q 000326 174 AADFV-MEAVPLLTNL-LQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTY 251 (1661)
Q Consensus 174 ~~~~v-~~~lp~L~~l-L~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~ 251 (1661)
...+ +.++|.|.++ +++++..|+.+++.|+..+++. ++... +++.+.-++.... ...+.++
T Consensus 422 -~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~-------lD~~~---v~d~~lpi~~~~~------~~dp~iv 484 (700)
T KOG2137|consen 422 -VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR-------LDKAA---VLDELLPILKCIK------TRDPAIV 484 (700)
T ss_pred -HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH-------HHHHH---hHHHHHHHHHHhc------CCCcHHH
Confidence 3444 4589999999 7788999999999999999964 22222 3333333333221 1257788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhcccCCCCCC
Q 000326 252 TGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQ 323 (1661)
Q Consensus 252 ~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~ 323 (1661)
..++++..++..-...- +.++-.+++|.+.-+..... -+.+|--.++..|..++-.+.+
T Consensus 485 ~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~------------L~~~Qy~~~m~~i~~ml~~ie~ 543 (700)
T KOG2137|consen 485 MGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPS------------LNGEQYNKYMSEIRLMLSAIEK 543 (700)
T ss_pred HHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccc------------ccHHHHHHHHHHHHHHHhhhhH
Confidence 88888888776443322 34455566676666555322 2568888888888888877665
No 116
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=2.9 Score=55.27 Aligned_cols=259 Identities=13% Similarity=0.123 Sum_probs=168.4
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000326 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1661)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~ 91 (1661)
+.++-++..|.+..++.+|.-|++.+..+- .+.+++..+...+++-.|+.+|.+ .|.....+.-.|+.+++ +++-
T Consensus 1771 g~F~l~~~~lr~~~~~~iq~LaL~Vi~~~T--an~~Cv~~~a~~~vL~~LL~lLHS--~PS~R~~vL~vLYAL~S-~~~i 1845 (2235)
T KOG1789|consen 1771 GNFPLLITYLRCRKHPKLQILALQVILLAT--ANKECVTDLATCNVLTTLLTLLHS--QPSMRARVLDVLYALSS-NGQI 1845 (2235)
T ss_pred cccHHHHHHHHHcCCchHHHHHHHHHHHHh--cccHHHHHHHhhhHHHHHHHHHhc--ChHHHHHHHHHHHHHhc-CcHH
Confidence 456677788888789999999999986544 346788888899999999999975 36777778888888876 4556
Q ss_pred hhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCc---c--------------hhhhcCchHHHHhhhcc----
Q 000326 92 CAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHP---T--------------ACLRAGALMAVLSYLDF---- 150 (1661)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~---~--------------~Il~~GgL~~LL~lLd~---- 150 (1661)
.....++|++--+.+-+-.......+.|+...|+++-.+.- . .+++.|- .+.++.+..
T Consensus 1846 ~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~P-EAaVH~fE~T~En 1924 (2235)
T KOG1789|consen 1846 GKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSP-EAAVHMFESTSEN 1924 (2235)
T ss_pred HHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCH-HHHHHHHhccCCC
Confidence 66677788877776444456667888888888888865411 0 1222222 333333211
Q ss_pred --------------------------------------------------------------------------------
Q 000326 151 -------------------------------------------------------------------------------- 150 (1661)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (1661)
T Consensus 1925 PELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~L 2004 (2235)
T KOG1789|consen 1925 PELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTEL 2004 (2235)
T ss_pred cccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHH
Confidence
Q ss_pred ----------C--ChHHHHHHHHHHHHhccCCCCc-hhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHH
Q 000326 151 ----------F--STGVQRVALSTAANMCKKLPSD-AADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDK 217 (1661)
Q Consensus 151 ----------~--~~~vqr~Al~aLsNlc~~~~~~-~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~ 217 (1661)
. ..+.......++..+.+..|.- +..---+-+|.++..+.+++..+=..|+..|-.|++ +.-.
T Consensus 2005 Lek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lse----n~~C 2080 (2235)
T KOG1789|consen 2005 LEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSE----NQFC 2080 (2235)
T ss_pred HHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhh----ccHH
Confidence 0 0011111111111122211111 111112456777777777776666788888888888 5677
Q ss_pred HHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHh-cCCHHHHHHHHHcCChHHHHHhhcCCCc
Q 000326 218 LDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCA-SGSPLCAKTLLHLGISGILKDILSGSGV 290 (1661)
Q Consensus 218 ~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLa-s~s~~~t~~Ll~~gil~~L~~LL~~~~~ 290 (1661)
.+++.....+..++.+|... +...--++.+|-.+. +...+...+.+++|+++.|.+||.+...
T Consensus 2081 ~~AMA~l~~i~~~m~~mkK~----------~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~tL 2144 (2235)
T KOG1789|consen 2081 CDAMAQLPCIDGIMKSMKKQ----------PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSSTL 2144 (2235)
T ss_pred HHHHhccccchhhHHHHHhc----------chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccccc
Confidence 88888877788888888653 335556666666554 4567888889999999999999987653
No 117
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=94.48 E-value=0.048 Score=44.36 Aligned_cols=35 Identities=26% Similarity=0.254 Sum_probs=32.6
Q ss_pred hhhhcCchHHHHhhhccCChHHHHHHHHHHHHhcc
Q 000326 134 ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCK 168 (1661)
Q Consensus 134 ~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~ 168 (1661)
.+++.|++++++.+|...+..+++.|+|++.|++.
T Consensus 7 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 7 AVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 58899999999999998899999999999999974
No 118
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=94.27 E-value=9.1 Score=49.35 Aligned_cols=155 Identities=15% Similarity=0.166 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhc
Q 000326 31 VEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLT 110 (1661)
Q Consensus 31 l~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~ 110 (1661)
.+-|.+.+++|....... .....-..++..-+. +......|+..|......-|+.... ||.+++ .|.+
T Consensus 2 ie~lY~~~~~L~~a~d~~----~~~~~y~~il~~~kg--~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~-DLcE 69 (556)
T PF05918_consen 2 IEKLYENYEILADAKDKS----QHEEDYKEILDGVKG--SPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQL-DLCE 69 (556)
T ss_dssp HHHHHHHHHHHHHTGGGG----GGHHHHHHHHHGGGS---HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHH-HHHT
T ss_pred HHHHHHHHhHhhcCCCcc----cCHHHHHHHHHHccC--CHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHH-HHHh
Confidence 456677788888753321 111123333444442 4788899999999999888876665 566888 7888
Q ss_pred CCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhc
Q 000326 111 IEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQ 190 (1661)
Q Consensus 111 ~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~ 190 (1661)
-++..|+.||+..|-.||.+.++.|-+ ....|+++|...+..-...+-++|..+.+.. ..+.+-.|...+.
T Consensus 70 Ded~~iR~~aik~lp~~ck~~~~~v~k--vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d-------~k~tL~~lf~~i~ 140 (556)
T PF05918_consen 70 DEDVQIRKQAIKGLPQLCKDNPEHVSK--VADVLVQLLQTDDPVELDAVKNSLMSLLKQD-------PKGTLTGLFSQIE 140 (556)
T ss_dssp -SSHHHHHHHHHHGGGG--T--T-HHH--HHHHHHHHTT---HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhHHHHHHhHHHHHhH--HHHHHHHHHhcccHHHHHHHHHHHHHHHhcC-------cHHHHHHHHHHHH
Confidence 999999999999999999988765533 3566777776544433333334444443321 2234444444443
Q ss_pred ---cCCHHHHHHHHHHHHH
Q 000326 191 ---YHDAKVLEHASVCLTR 206 (1661)
Q Consensus 191 ---~~D~~v~e~A~~aLs~ 206 (1661)
.+|..+.+.++..|..
T Consensus 141 ~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 141 SSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp ---HS-HHHHHHHHHHHHH
T ss_pred hcccCchHHHHHHHHHHHH
Confidence 5677788877766643
No 119
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.12 E-value=1.1 Score=49.56 Aligned_cols=109 Identities=17% Similarity=0.212 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccH-HHH
Q 000326 26 EEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAV-TCF 104 (1661)
Q Consensus 26 D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaV-p~L 104 (1661)
||.++-.++..++.++..-++ ..+.++|.+...|.++ ++.++..|..+|++|..... +--.|-+ ..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~------~ve~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~ 68 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN------LVEPYLPNLYKCLRDE-DPLVRKTALLVLSHLILEDM-----IKVKGQLFSRI 68 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH------HHHhHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHH
Confidence 578888999999998887532 3567899999999987 59999999999999986532 2222333 677
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHhhcc-CcchhhhcCchHHHHhhhc
Q 000326 105 VARLLTIEYMDLAEQSLQALKKISQE-HPTACLRAGALMAVLSYLD 149 (1661)
Q Consensus 105 v~kLL~~~~~dl~Eqal~aL~nIS~~-~~~~Il~~GgL~~LL~lLd 149 (1661)
+ .++.-++++++..|..++..++.. .++.+ ...++.++..|.
T Consensus 69 l-~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i--~~~~~e~i~~l~ 111 (178)
T PF12717_consen 69 L-KLLVDENPEIRSLARSFFSELLKKRNPNII--YNNFPELISSLN 111 (178)
T ss_pred H-HHHcCCCHHHHHHHHHHHHHHHHhccchHH--HHHHHHHHHHHh
Confidence 7 788889999999999999999987 44444 233555555554
No 120
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.02 E-value=0.53 Score=63.16 Aligned_cols=186 Identities=16% Similarity=0.184 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCC---CCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHH
Q 000326 28 GKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHE---SNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCF 104 (1661)
Q Consensus 28 ~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~---~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~L 104 (1661)
+.-.+++..+|+.=....+.. ....+.|.++++.+.. .+|++|..|.-||+-+|..+.+.+.. ..|.|
T Consensus 895 Dd~~d~i~~icE~eLl~gek~----lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~ll 965 (1251)
T KOG0414|consen 895 DDLADLISGICEKELLYGEKS----LLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLL 965 (1251)
T ss_pred hhHHHHHHHHHHHHHhcChHH----HHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHH
Confidence 334455556655332222221 2345788899988643 36999999999999999987766554 67899
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHH
Q 000326 105 VARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPL 184 (1661)
Q Consensus 105 v~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~ 184 (1661)
+.-|-.++.+-++-+++-+|+-++-..++.|= ---..+...|...++.++++|+-++++|.-+ +...++|.++-
T Consensus 966 ftimeksp~p~IRsN~VvalgDlav~fpnlie--~~T~~Ly~rL~D~~~~vRkta~lvlshLILn----dmiKVKGql~e 1039 (1251)
T KOG0414|consen 966 FTIMEKSPSPRIRSNLVVALGDLAVRFPNLIE--PWTEHLYRRLRDESPSVRKTALLVLSHLILN----DMIKVKGQLSE 1039 (1251)
T ss_pred HHHHhcCCCceeeecchheccchhhhcccccc--hhhHHHHHHhcCccHHHHHHHHHHHHHHHHh----hhhHhcccHHH
Confidence 95455589999999999999999988886442 2234566677788999999999999999864 45678999999
Q ss_pred HHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccC
Q 000326 185 LTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTS 237 (1661)
Q Consensus 185 L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~ 237 (1661)
+..+|..+++.|..-|-..+--|... . ..+. +++|.++.-|++.
T Consensus 1040 MA~cl~D~~~~IsdlAk~FF~Els~k---~----n~iy--nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1040 MALCLEDPNAEISDLAKSFFKELSSK---G----NTIY--NLLPDILSRLSNG 1083 (1251)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhhhc---c----cchh--hhchHHHHhhccC
Confidence 99999999999887666666666653 1 2232 4677777777665
No 121
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.81 E-value=31 Score=45.43 Aligned_cols=180 Identities=15% Similarity=0.185 Sum_probs=120.5
Q ss_pred CCcccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 000326 7 SSHQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCD 86 (1661)
Q Consensus 7 ~~~~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~ 86 (1661)
.....-+-..|...|++. .....++|+..+=.++..+.+ ...+-|.+|+-.... |.+++...---|.-.|+
T Consensus 30 f~sd~~~~~dL~~lLdSn-kd~~KleAmKRIia~iA~G~d-------vS~~Fp~VVKNVask-n~EVKkLVyvYLlrYAE 100 (968)
T KOG1060|consen 30 FLSDNIRHDDLKQLLDSN-KDSLKLEAMKRIIALIAKGKD-------VSLLFPAVVKNVASK-NIEVKKLVYVYLLRYAE 100 (968)
T ss_pred eecCCCChHHHHHHHhcc-ccHHHHHHHHHHHHHHhcCCc-------HHHHHHHHHHHhhcc-CHHHHHHHHHHHHHHhh
Confidence 334556778899999987 557778888877655554432 455678888887765 68998877777777787
Q ss_pred cCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhccCChHHHHHHHHHHHHh
Q 000326 87 VLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANM 166 (1661)
Q Consensus 87 ~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNl 166 (1661)
..|+-+-. -|..+. +=|.-++..++--|+.+|.-|=.---.-| .+-++-+.....++-+.+.|+.+|--|
T Consensus 101 eqpdLALL-----SIntfQ-k~L~DpN~LiRasALRvlSsIRvp~IaPI----~llAIk~~~~D~s~yVRk~AA~AIpKL 170 (968)
T KOG1060|consen 101 EQPDLALL-----SINTFQ-KALKDPNQLIRASALRVLSSIRVPMIAPI----MLLAIKKAVTDPSPYVRKTAAHAIPKL 170 (968)
T ss_pred cCCCceee-----eHHHHH-hhhcCCcHHHHHHHHHHHHhcchhhHHHH----HHHHHHHHhcCCcHHHHHHHHHhhHHH
Confidence 76654322 255677 78888889998877777766622111111 122333344567788888888888776
Q ss_pred ccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHh
Q 000326 167 CKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAE 209 (1661)
Q Consensus 167 c~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~ 209 (1661)
-+-.+... ...+..+..||...++.|+-.|..|+--+|-
T Consensus 171 YsLd~e~k----~qL~e~I~~LLaD~splVvgsAv~AF~evCP 209 (968)
T KOG1060|consen 171 YSLDPEQK----DQLEEVIKKLLADRSPLVVGSAVMAFEEVCP 209 (968)
T ss_pred hcCChhhH----HHHHHHHHHHhcCCCCcchhHHHHHHHHhch
Confidence 65322111 2456677778888899999999988887775
No 122
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=93.60 E-value=3.6 Score=54.27 Aligned_cols=202 Identities=15% Similarity=0.251 Sum_probs=134.9
Q ss_pred CHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHH
Q 000326 26 EEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFV 105 (1661)
Q Consensus 26 D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv 105 (1661)
-+.....|++.+|-.. ....+..+ .-+++..|+++.... ..++-..-.-+|+.++..+|+..... ++-+.|.++
T Consensus 504 ~~~~ki~a~~~~~~~~---~~~vl~~~-~p~ild~L~qlas~~-s~evl~llmE~Ls~vv~~dpef~as~-~skI~P~~i 577 (1005)
T KOG2274|consen 504 PPPVKISAVRAFCGYC---KVKVLLSL-QPMILDGLLQLASKS-SDEVLVLLMEALSSVVKLDPEFAASM-ESKICPLTI 577 (1005)
T ss_pred CCchhHHHHHHHHhcc---Cceecccc-chHHHHHHHHHcccc-cHHHHHHHHHHHHHHhccChhhhhhh-hcchhHHHH
Confidence 4466666666666544 12222222 224566666666544 35666667778999999988776643 445677776
Q ss_pred HHH-hcCCcHHHHHHHHHHHHHhhccCcc-hhhhcCchHHHHhhhccCC----hHHHHHHHHHHHHhccCCCCc-hhHHH
Q 000326 106 ARL-LTIEYMDLAEQSLQALKKISQEHPT-ACLRAGALMAVLSYLDFFS----TGVQRVALSTAANMCKKLPSD-AADFV 178 (1661)
Q Consensus 106 ~kL-L~~~~~dl~Eqal~aL~nIS~~~~~-~Il~~GgL~~LL~lLd~~~----~~vqr~Al~aLsNlc~~~~~~-~~~~v 178 (1661)
.-. ..+.++-++.++--+++.++....+ -=...-.|+.+++.|+... +..+-.|+-+|.-+.|+.|++ ....+
T Consensus 578 ~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~ 657 (1005)
T KOG2274|consen 578 NLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI 657 (1005)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH
Confidence 433 3456788888888888888774333 1334457899999997554 778888888888888876544 44557
Q ss_pred hCcHHHHHHh-hccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHH-hCC-----cHHHHHHhhcc
Q 000326 179 MEAVPLLTNL-LQYHDAKVLEHASVCLTRIAEAFASSPDKLDELC-NHG-----LVTQAATLIST 236 (1661)
Q Consensus 179 ~~~lp~L~~l-L~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li-~~g-----ll~~Lv~LL~~ 236 (1661)
.-++|.+.++ |.++|...+.++--||..++.. ..+++..-- +.| +++.+-+||..
T Consensus 658 ~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~---~~eq~~t~~~e~g~~~~yImqV~sqLLdp 719 (1005)
T KOG2274|consen 658 CYAFPAVAKITLHSDDHETLQNATECLRALISV---TLEQLLTWHDEPGHNLWYIMQVLSQLLDP 719 (1005)
T ss_pred HHHhHHhHhheeecCChHHHHhHHHHHHHHHhc---CHHHHHhhccCCCccHHHHHHHHHHHcCC
Confidence 7899999999 7778899999999999999885 444444333 223 44555566644
No 123
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=93.50 E-value=8.5 Score=49.93 Aligned_cols=148 Identities=16% Similarity=0.084 Sum_probs=96.9
Q ss_pred cCcHHHHHHhhcCC-------CCHHHHHHHHHHHHHhhc--cCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHH
Q 000326 55 DSFAPVLVGLLNHE-------SNPDIMLLAARALTHLCD--VLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALK 125 (1661)
Q Consensus 55 ~g~vp~Lv~lL~~~-------~~~eiq~~A~raL~NLa~--~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~ 125 (1661)
.|.++-++.+|... +|+--..-|.|.+.+|.. ..+.....+.++=+|+.++ --+.+++-=++-+|+..+.
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~-P~f~s~ygfL~Srace~is 485 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVI-PAFRSNYGFLKSRACEFIS 485 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhh-HhhcCcccchHHHHHHHHH
Confidence 56789999999421 223333456778887776 3333444455544555554 4557888999999999999
Q ss_pred HhhccCcchhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCCCc--hhHHHhCcHHHHHHhhccCCHHHHHHHHHH
Q 000326 126 KISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSD--AADFVMEAVPLLTNLLQYHDAKVLEHASVC 203 (1661)
Q Consensus 126 nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~--~~~~v~~~lp~L~~lL~~~D~~v~e~A~~a 203 (1661)
.++.|-++..+-..+.......+.+....++-.|+-|+.-+.++.... -..++.+.+..|..|-+.-+.+++..+.-.
T Consensus 486 ~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe~ 565 (970)
T COG5656 486 TIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVMES 565 (970)
T ss_pred HHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHHHH
Confidence 998888887766777888888888888888888888888777755211 122344444444444444456666544433
No 124
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.34 E-value=0.12 Score=52.86 Aligned_cols=72 Identities=18% Similarity=0.311 Sum_probs=60.8
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhc
Q 000326 57 FAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQ 129 (1661)
Q Consensus 57 ~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~ 129 (1661)
++..|+++|...+++.....||-=|+.++...|+.+..+-+.|+=..++ .|+..++.+|+.+|+.|+..|-.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM-~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVM-ELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHH-HHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHH-HHhcCCCHHHHHHHHHHHHHHHH
Confidence 6999999996665688888999999999999998877777888888888 99999999999999999988743
No 125
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=93.09 E-value=3 Score=48.89 Aligned_cols=237 Identities=14% Similarity=0.138 Sum_probs=125.1
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCccc---ccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHh-----
Q 000326 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESL---STFSVDSFAPVLVGLLNHESNPDIMLLAARALTHL----- 84 (1661)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l---~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NL----- 84 (1661)
-++.|-.+|..+ |..+..-|+..+..++..++.... ..+...+++|.++.++..++ .++-..|...|..|
T Consensus 83 lmpdLQrGLiad-dasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrialfpa 160 (524)
T KOG4413|consen 83 LMPDLQRGLIAD-DASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIALFPA 160 (524)
T ss_pred hhHHHHhcccCC-cchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHhcHH
Confidence 355666678776 778888889999899988864333 24557789999999988664 44444444443333
Q ss_pred --------------------------------------hccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 000326 85 --------------------------------------CDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKK 126 (1661)
Q Consensus 85 --------------------------------------a~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~n 126 (1661)
.+.+|+....+-.+|.+..|...|-...+.-+.-.|+.....
T Consensus 161 aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvte 240 (524)
T KOG4413|consen 161 ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTE 240 (524)
T ss_pred HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHH
Confidence 334444444444555555554344333444444455555555
Q ss_pred hhccCc--chhhhcCchHHHHhhhccC--ChHHHHHHHHHHHHhccCCC--CchhHHHhCcHH----HHHHhhccCCHHH
Q 000326 127 ISQEHP--TACLRAGALMAVLSYLDFF--STGVQRVALSTAANMCKKLP--SDAADFVMEAVP----LLTNLLQYHDAKV 196 (1661)
Q Consensus 127 IS~~~~--~~Il~~GgL~~LL~lLd~~--~~~vqr~Al~aLsNlc~~~~--~~~~~~v~~~lp----~L~~lL~~~D~~v 196 (1661)
++.-+. ..+-+.|.|..+..++.-. ++--.-.++-....+..+.. ....+.+.+.+| .....+..+|++.
T Consensus 241 LaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpda 320 (524)
T KOG4413|consen 241 LAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDA 320 (524)
T ss_pred HHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchH
Confidence 543222 2455556555555555421 11111112222222222110 001111222222 2233456778888
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHhCC--cHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhc
Q 000326 197 LEHASVCLTRIAEAFASSPDKLDELCNHG--LVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCAS 263 (1661)
Q Consensus 197 ~e~A~~aLs~L~~~~~~~~e~~~~li~~g--ll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas 263 (1661)
++.|.-++.-+.. +-+-.+.+...| ...+++--..+.+ ...-+..++++|.+|+.
T Consensus 321 ieaAiDalGilGS----nteGadlllkTgppaaehllarafdqn--------ahakqeaaihaLaaIag 377 (524)
T KOG4413|consen 321 IEAAIDALGILGS----NTEGADLLLKTGPPAAEHLLARAFDQN--------AHAKQEAAIHALAAIAG 377 (524)
T ss_pred HHHHHHHHHhccC----CcchhHHHhccCChHHHHHHHHHhccc--------ccchHHHHHHHHHHhhc
Confidence 8888888777766 455566666655 3444444443332 12246677788887764
No 126
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.97 E-value=0.69 Score=59.90 Aligned_cols=295 Identities=20% Similarity=0.223 Sum_probs=177.3
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc---
Q 000326 57 FAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT--- 133 (1661)
Q Consensus 57 ~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~--- 133 (1661)
+...|.++++++ ++.++..|+-|+.++-... ...+.+.|.++.|- .|+..+++.+...|+.+|..|...+++
T Consensus 122 ~~~Pl~~~l~d~-~~yvRktaa~~vakl~~~~---~~~~~~~gl~~~L~-~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~ 196 (734)
T KOG1061|consen 122 LCDPLLKCLKDD-DPYVRKTAAVCVAKLFDID---PDLVEDSGLVDALK-DLLSDSNPMVVANALAALSEIHESHPSVNL 196 (734)
T ss_pred HHHHHHHhccCC-ChhHHHHHHHHHHHhhcCC---hhhccccchhHHHH-HHhcCCCchHHHHHHHHHHHHHHhCCCCCc
Confidence 456777777766 5999999999999987754 45577889999999 788888999999999999999887764
Q ss_pred hhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCC
Q 000326 134 ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFAS 213 (1661)
Q Consensus 134 ~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~ 213 (1661)
..+..-.+..++.-|.+.+.=-|-..+-+ +....+.++ .-...++..+...|+|....|+-.+...+.+++.-
T Consensus 197 ~~l~~~~~~~lL~al~ec~EW~qi~IL~~---l~~y~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~--- 269 (734)
T KOG1061|consen 197 LELNPQLINKLLEALNECTEWGQIFILDC---LAEYVPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKY--- 269 (734)
T ss_pred ccccHHHHHHHHHHHHHhhhhhHHHHHHH---HHhcCCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHH---
Confidence 12222233444444443333333333333 333444444 44566778888889999999999999999999985
Q ss_pred CHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcccc
Q 000326 214 SPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSAN 293 (1661)
Q Consensus 214 ~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~ 293 (1661)
.++ ....+-..+-+.++.++... + +++--+++-+..+.-..|.+-.
T Consensus 270 ~~~-~~~~~~~K~~~pl~tlls~~---------~-e~qyvaLrNi~lil~~~p~~~~----------------------- 315 (734)
T KOG1061|consen 270 LKQ-VNELLFKKVAPPLVTLLSSE---------S-EIQYVALRNINLILQKRPEILK----------------------- 315 (734)
T ss_pred HHH-HHHHHHHHhcccceeeeccc---------c-hhhHHHHhhHHHHHHhChHHHH-----------------------
Confidence 222 33333334556666666553 2 5565566655544443333211
Q ss_pred cccccccCCCHHHHHHHHHHhcccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCcchhhhHHHhh--cc
Q 000326 294 SAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLL--SD 371 (1661)
Q Consensus 294 ~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~ 371 (1661)
.++-.|.+....|+. .+. .+.+++ ..
T Consensus 316 --------------~~~~~Ff~kynDPiY---------vK~-----------------------------eKleil~~la 343 (734)
T KOG1061|consen 316 --------------VEIKVFFCKYNDPIY---------VKL-----------------------------EKLEILIELA 343 (734)
T ss_pred --------------hHhHeeeeecCCchh---------hHH-----------------------------HHHHHHHHHh
Confidence 111111111111110 000 011111 01
Q ss_pred CHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHhhcCCHHHHHHHhhhcchHHHHHHHhhcCCCchHHhHHHHH
Q 000326 372 QPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIA 451 (1661)
Q Consensus 372 ~~e~~~~f~~~l~p~Li~vy~ss~~~~VR~~~L~~i~r~v~~~~~~~L~~~l~~~~~ss~la~il~~~d~~l~~~aL~i~ 451 (1661)
+.+-+++ +++=|. .|..-++.+.=+++.+||.++---.... +..++.||..+ ..+-..++.-+...+
T Consensus 344 ~~~nl~q----vl~El~-eYatevD~~fvrkaIraig~~aik~e~~-------~~cv~~lLell-~~~~~yvvqE~~vvi 410 (734)
T KOG1061|consen 344 NDANLAQ----VLAELK-EYATEVDVDFVRKAVRAIGRLAIKAEQS-------NDCVSILLELL-ETKVDYVVQEAIVVI 410 (734)
T ss_pred hHhHHHH----HHHHHH-HhhhhhCHHHHHHHHHHhhhhhhhhhhh-------hhhHHHHHHHH-hhcccceeeehhHHH
Confidence 2222222 233332 4888899988999999998865333222 34555666554 334445777888999
Q ss_pred HHHHhhCchhh
Q 000326 452 EILMEKLPGTF 462 (1661)
Q Consensus 452 ~~Ll~K~pd~f 462 (1661)
+.++.|+|..|
T Consensus 411 ~dilRkyP~~~ 421 (734)
T KOG1061|consen 411 RDILRKYPNKY 421 (734)
T ss_pred HhhhhcCCCch
Confidence 99999999865
No 127
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=92.63 E-value=3.7 Score=54.27 Aligned_cols=275 Identities=17% Similarity=0.181 Sum_probs=171.2
Q ss_pred cccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcC--CC-CHHHHHHHHHHHHHhh
Q 000326 9 HQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNH--ES-NPDIMLLAARALTHLC 85 (1661)
Q Consensus 9 ~~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~--~~-~~eiq~~A~raL~NLa 85 (1661)
..+.-++.|++.+.+ +|..|+--+..|.+++....-+ .....++.+..+|-. +. ..-.....+-||+.|+
T Consensus 888 nl~~yLpfil~qi~s--qpk~QyLLLhSlkevi~~~svd-----~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~ 960 (1233)
T KOG1824|consen 888 NLPKYLPFILEQIES--QPKRQYLLLHSLKEVIVSASVD-----GLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLV 960 (1233)
T ss_pred chHhHHHHHHHHHhc--chHhHHHHHHHHHHHHHHhccc-----hhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHH
Confidence 445556666666654 5777887778887777765432 112234444554421 11 1334667888999999
Q ss_pred ccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc--hhhhcCchHHHHhhhccCChHHHHHHHHHH
Q 000326 86 DVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT--ACLRAGALMAVLSYLDFFSTGVQRVALSTA 163 (1661)
Q Consensus 86 ~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~--~Il~~GgL~~LL~lLd~~~~~vqr~Al~aL 163 (1661)
...|+. .+|.|- .++.++....+--++.+....-.+.+. .++....+...+.++...+.++.|.|+.++
T Consensus 961 l~epes--------LlpkL~-~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~ 1031 (1233)
T KOG1824|consen 961 LIEPES--------LLPKLK-LLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVL 1031 (1233)
T ss_pred hCChHH--------HHHHHH-HHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 988855 688888 888999999999999998887777664 355556677888889999999999999999
Q ss_pred HHhccCCCCchhHHHhCcHHHHHHhhccCC----------------------HHHHHHHHHHHHHHHhhcCCCHHHHHHH
Q 000326 164 ANMCKKLPSDAADFVMEAVPLLTNLLQYHD----------------------AKVLEHASVCLTRIAEAFASSPDKLDEL 221 (1661)
Q Consensus 164 sNlc~~~~~~~~~~v~~~lp~L~~lL~~~D----------------------~~v~e~A~~aLs~L~~~~~~~~e~~~~l 221 (1661)
...+.+.| ..+++.+|.|...|.++. -++...|.-|++.|.+. .-++++..
T Consensus 1032 nSaahNKp----slIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLds---cld~~dit 1104 (1233)
T KOG1824|consen 1032 NSAAHNKP----SLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDS---CLDRLDIT 1104 (1233)
T ss_pred HHHHccCH----hHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHh---hhhhccHH
Confidence 88887765 346777777766654321 25667777888888774 22211110
Q ss_pred HhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcccccccccccC
Q 000326 222 CNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALS 301 (1661)
Q Consensus 222 i~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~ 301 (1661)
..+..+..-|.. -..++.-..-+|..++.-+|.....-++ -+++.|...++.-.+. .++-.=..
T Consensus 1105 ---~Fl~~~~~GL~D----------hydiKmlt~l~l~rLa~lcPs~VlqrlD-~l~EpLr~t~~~k~k~--~svKqE~e 1168 (1233)
T KOG1824|consen 1105 ---EFLNHVEDGLED----------HYDIKMLTFLMLARLADLCPSAVLQRLD-RLVEPLRKTCTLKVKA--NSVKQEFE 1168 (1233)
T ss_pred ---HHHHHHHhhcch----------hhHHHHHHHHHHHHHHhhCcHHHHHHHH-HHHHHHHHHhhccccc--chHhHhHH
Confidence 011112211211 1346666677788888888887665555 2445566555533321 11100011
Q ss_pred CCHHHHHHHHHHhccc--CCCCC
Q 000326 302 RPAEQIFEIVNLANEL--LPPLP 322 (1661)
Q Consensus 302 ~~~~qi~~vi~li~~L--LP~L~ 322 (1661)
...+....+++.+..| +|...
T Consensus 1169 k~~eLkRSAlRav~~L~~ip~v~ 1191 (1233)
T KOG1824|consen 1169 KQDELKRSALRAVAALLTIPEVE 1191 (1233)
T ss_pred HHHHHHHHHHHHHHHHhcccccc
Confidence 2345667777777777 55433
No 128
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=92.54 E-value=1.5 Score=54.02 Aligned_cols=254 Identities=15% Similarity=0.143 Sum_probs=145.3
Q ss_pred CCcccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 000326 7 SSHQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCD 86 (1661)
Q Consensus 7 ~~~~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~ 86 (1661)
..+-...+..|+++|.+..-...+..++.+||..+.. ..-...|...|++..+++.+.+.....+--.|+-|+.++..
T Consensus 16 n~rf~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~~--~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~ 93 (361)
T PF07814_consen 16 NQRFADEVEYLLDGLESSSSSSVRRSSLLELASKCAD--PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLS 93 (361)
T ss_pred hhhHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhCC--HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHc
Confidence 3445567888999998654568999999999988774 23335788999999999999644333244455556666665
Q ss_pred cCCcchhhhcccccHHHHHHHHhcCCc--------------------------------------------HHHHHHHHH
Q 000326 87 VLPSSCAAVVHYGAVTCFVARLLTIEY--------------------------------------------MDLAEQSLQ 122 (1661)
Q Consensus 87 ~~p~~~~~vV~~GaVp~Lv~kLL~~~~--------------------------------------------~dl~Eqal~ 122 (1661)
......+.+.+.+.+..++ +|+.... ..-+--|+.
T Consensus 94 ~d~~~~~l~~~~~~~~ll~-~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall 172 (361)
T PF07814_consen 94 RDGLNMHLLLDRDSLRLLL-KLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALL 172 (361)
T ss_pred cCCcchhhhhchhHHHHHH-HHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHH
Confidence 5444444444555555555 6666110 011112344
Q ss_pred HHHHhhcc-----------------CcchhhhcCchHHHHhhhcc----C------------ChHHHHHHHHHHHHhccC
Q 000326 123 ALKKISQE-----------------HPTACLRAGALMAVLSYLDF----F------------STGVQRVALSTAANMCKK 169 (1661)
Q Consensus 123 aL~nIS~~-----------------~~~~Il~~GgL~~LL~lLd~----~------------~~~vqr~Al~aLsNlc~~ 169 (1661)
||+.++.. ..+.+...||+..++..+.. . .......+++++-|....
T Consensus 173 ~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~ 252 (361)
T PF07814_consen 173 ALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFL 252 (361)
T ss_pred HHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhc
Confidence 44444210 00135566788888888751 1 112233477777776654
Q ss_pred CCCchhHHH---hCcHHHHHHh-hc---cCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCC----
Q 000326 170 LPSDAADFV---MEAVPLLTNL-LQ---YHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSN---- 238 (1661)
Q Consensus 170 ~~~~~~~~v---~~~lp~L~~l-L~---~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~---- 238 (1661)
....+...+ ...++.+... +. ....+++..++..+.||+.. +++..+.+...++...+..+...-.
T Consensus 253 ~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~---n~~~c~~~~s~~l~~~~~~i~~~~~~~~~ 329 (361)
T PF07814_consen 253 SEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNN---NPSACEEFASPKLGQQLGLIVTSFFCVLS 329 (361)
T ss_pred CccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCC---CccchHhhhhhHhccchHHHHHhhccccc
Confidence 333222222 1233333222 22 22345566778888888885 7777778777765555443332110
Q ss_pred -CCCCCCCCChhHHHHHHHHHHHHhcCCH
Q 000326 239 -SGGGQASLSTPTYTGLIRLLSTCASGSP 266 (1661)
Q Consensus 239 -~~~~~~~~s~~i~~~alr~L~nLas~s~ 266 (1661)
....+.....++..-++.+|.|++-.++
T Consensus 330 ~~~~~~~~~~~D~~IL~Lg~LINL~E~s~ 358 (361)
T PF07814_consen 330 LPNYVPEESSFDILILALGLLINLVEHSE 358 (361)
T ss_pred ccccccccccchHHHHHHHhHHHheeeCc
Confidence 0001222345678888888889887664
No 129
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.51 E-value=8.6 Score=45.36 Aligned_cols=257 Identities=15% Similarity=0.123 Sum_probs=149.4
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccc--cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCC
Q 000326 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSV--DSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLP 89 (1661)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~--~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p 89 (1661)
+.+.+++..|.+- .|.++..|+..+-.+... ..+.+.. ...++.|.+++.... + -..|+++|.|++...
T Consensus 3 s~l~elv~ll~~~-sP~v~~~AV~~l~~lt~~----~~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq~~- 73 (353)
T KOG2973|consen 3 SELVELVELLHSL-SPPVRKAAVEHLLGLTGR----GLQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQKE- 73 (353)
T ss_pred hHHHHHHHHhccC-ChHHHHHHHHHHhhcccc----chhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHhhH-
Confidence 4567889999887 999999998887554433 2333332 236888999998653 3 448999999998743
Q ss_pred cchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc-----hhhh----cCchHHHHhhhccC-Ch-HHHHH
Q 000326 90 SSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT-----ACLR----AGALMAVLSYLDFF-ST-GVQRV 158 (1661)
Q Consensus 90 ~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~-----~Il~----~GgL~~LL~lLd~~-~~-~vqr~ 158 (1661)
.-...+++. .+..++ ..+..+.-.+++-.+..|.|++++... ..+. .|.+.....+.+.. +. .-...
T Consensus 74 ~l~~~ll~~-~~k~l~-~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~y 151 (353)
T KOG2973|consen 74 ELRKKLLQD-LLKVLM-DMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHY 151 (353)
T ss_pred HHHHHHHHH-HHHHHH-HHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhH
Confidence 344455543 555566 444555567889999999999998764 1222 34444444444432 11 12234
Q ss_pred HHHHHHHhccCCCCchhHHHhCcHHHHHHh-hccCCHHHHHH-HHHHHHHHHhhcCCCHHHHHHHHhC--CcHHHHH---
Q 000326 159 ALSTAANMCKKLPSDAADFVMEAVPLLTNL-LQYHDAKVLEH-ASVCLTRIAEAFASSPDKLDELCNH--GLVTQAA--- 231 (1661)
Q Consensus 159 Al~aLsNlc~~~~~~~~~~v~~~lp~L~~l-L~~~D~~v~e~-A~~aLs~L~~~~~~~~e~~~~li~~--gll~~Lv--- 231 (1661)
.+.+++|+.+......+......+|.=.-+ +...|..|... ....|-|.|- +......+++. .+++.|.
T Consensus 152 lA~vf~nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cF----d~~~h~~lL~e~~~lLp~iLlPl 227 (353)
T KOG2973|consen 152 LAPVFANLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCF----DAKLHEVLLDESINLLPAILLPL 227 (353)
T ss_pred HHHHHHHHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhc----cchhHHHHhcchHHHHHHHHhhc
Confidence 566777887755545444444444432222 33345555543 3334445443 33333333332 2333333
Q ss_pred ------------------HhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCC
Q 000326 232 ------------------TLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGS 288 (1661)
Q Consensus 232 ------------------~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~ 288 (1661)
++|.... ..--++.+....+-+|-.||+.-.. .+.+-..|+-++|..+=...
T Consensus 228 agpee~sEEdm~~LP~eLQyLp~dK----eRepdpdIrk~llEai~lLcaT~~G-Re~lR~kgvYpilRElhk~e 297 (353)
T KOG2973|consen 228 AGPEELSEEDMAKLPVELQYLPEDK----EREPDPDIRKMLLEALLLLCATRAG-REVLRSKGVYPILRELHKWE 297 (353)
T ss_pred CCccccCHHHHhcCCHhhhcCCccc----cCCCChHHHHHHHHHHHHHHhhhHh-HHHHHhcCchHHHHHHhcCC
Confidence 2222111 1234678999999999999976443 24455577777776654443
No 130
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.37 E-value=4.8 Score=50.61 Aligned_cols=224 Identities=14% Similarity=0.089 Sum_probs=135.0
Q ss_pred CHHHHHHHHHHHHHHHhcCCCccccccc-ccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHH
Q 000326 26 EEGKQVEALTQLCEMLSIGTEESLSTFS-VDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCF 104 (1661)
Q Consensus 26 D~~~ql~Al~~L~~lL~~~~~~~l~~~~-~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~L 104 (1661)
++..+.--+.=|.-+.+. +.+..+- ...+.+-|..+|.++ +.+++..+--+|.++...-......+-....++.|
T Consensus 180 n~~tR~flv~Wl~~Lds~---P~~~m~~yl~~~ldGLf~~LsD~-s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vl 255 (675)
T KOG0212|consen 180 NPMTRQFLVSWLYVLDSV---PDLEMISYLPSLLDGLFNMLSDS-SDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVL 255 (675)
T ss_pred CchHHHHHHHHHHHHhcC---CcHHHHhcchHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHHhcCccccCcccchhhc
Confidence 666665555555333332 2222111 124677788888866 58999888777777764322121222334578888
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHhhccCcch--hhhcCchHHHHhhhccCChH-HHHHHHH---HHHHhccCCCCchhHHH
Q 000326 105 VARLLTIEYMDLAEQSLQALKKISQEHPTA--CLRAGALMAVLSYLDFFSTG-VQRVALS---TAANMCKKLPSDAADFV 178 (1661)
Q Consensus 105 v~kLL~~~~~dl~Eqal~aL~nIS~~~~~~--Il~~GgL~~LL~lLd~~~~~-vqr~Al~---aLsNlc~~~~~~~~~~v 178 (1661)
+ .-+.++.+.+++-|+.=|.-+-.-.++. ..-.|.+..+|..+...... +...+.. -+.-+|.........-.
T Consensus 256 v-~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~ 334 (675)
T KOG0212|consen 256 V-PHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDY 334 (675)
T ss_pred c-ccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccch
Confidence 8 5567778888887776666655555543 33467888888888765543 3322221 12334432211111224
Q ss_pred hCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHH
Q 000326 179 MEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLL 258 (1661)
Q Consensus 179 ~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L 258 (1661)
..++..|...|.++..+..-.++.-+..|-.. .+.++-. ....+.+.|..-|+.. +..++..++..+
T Consensus 335 ~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~---~p~ql~~-h~~~if~tLL~tLsd~---------sd~vvl~~L~ll 401 (675)
T KOG0212|consen 335 GSIIEVLTKYLSDDREETRIAVLNWIILLYHK---APGQLLV-HNDSIFLTLLKTLSDR---------SDEVVLLALSLL 401 (675)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHhh---Ccchhhh-hccHHHHHHHHhhcCc---------hhHHHHHHHHHH
Confidence 56788888888888777776666555555553 3322211 1235788888888765 688999999999
Q ss_pred HHHhcCCHH
Q 000326 259 STCASGSPL 267 (1661)
Q Consensus 259 ~nLas~s~~ 267 (1661)
++||..+..
T Consensus 402 a~i~~s~~~ 410 (675)
T KOG0212|consen 402 ASICSSSNS 410 (675)
T ss_pred HHHhcCccc
Confidence 999987544
No 131
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=91.92 E-value=0.42 Score=52.98 Aligned_cols=115 Identities=17% Similarity=0.115 Sum_probs=83.5
Q ss_pred ccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcC--------CCCHHHHHHHHHHH
Q 000326 10 QSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNH--------ESNPDIMLLAARAL 81 (1661)
Q Consensus 10 ~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~--------~~~~eiq~~A~raL 81 (1661)
.......++..|++. ... ...+..|+..|......=+..|...|.+..|+++|.. +...+++.++.+||
T Consensus 64 ~~~~p~~~i~~L~~~-~~~--~~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Cl 140 (187)
T PF06371_consen 64 AKSSPEWYIKKLKSR-PST--SKILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCL 140 (187)
T ss_dssp -CHHHHHHHHHHTTT---H--HHHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHcc-Ccc--HHHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHH
Confidence 345667788888775 222 2777888777776543334788888999999998862 24578999999999
Q ss_pred HHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhh
Q 000326 82 THLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKIS 128 (1661)
Q Consensus 82 ~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS 128 (1661)
..|+.........+-..++|..|+ ..+.++.+.++.+|+..|..||
T Consensus 141 kal~n~~~G~~~v~~~~~~v~~i~-~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 141 KALMNTKYGLEAVLSHPDSVNLIA-LSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHTSSHHHHHHHHCSSSHHHHHH-HT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHcCcHHHHHHH-HHHCCCCHHHHHHHHHHHHHHH
Confidence 999976544344455789999999 8888999999999999998876
No 132
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=91.84 E-value=3.1 Score=55.03 Aligned_cols=103 Identities=17% Similarity=0.081 Sum_probs=54.7
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhh
Q 000326 58 APVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLR 137 (1661)
Q Consensus 58 vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~ 137 (1661)
++.+.+=|+++ |+.++..|.|.|+-|=.. .++. .+++++. +++.....-++..|+-|+.+|=+-.++.+.+
T Consensus 94 vNti~kDl~d~-N~~iR~~AlR~ls~l~~~------el~~-~~~~~ik-~~l~d~~ayVRk~Aalav~kly~ld~~l~~~ 164 (757)
T COG5096 94 VNTIQKDLQDP-NEEIRGFALRTLSLLRVK------ELLG-NIIDPIK-KLLTDPHAYVRKTAALAVAKLYRLDKDLYHE 164 (757)
T ss_pred HHHHHhhccCC-CHHHHHHHHHHHHhcChH------HHHH-HHHHHHH-HHccCCcHHHHHHHHHHHHHHHhcCHhhhhc
Confidence 33334444443 456665555555554221 1111 2445555 5666666666666666666665555555555
Q ss_pred cCchHHHHhhhccCChHHHHHHHHHHHHhccC
Q 000326 138 AGALMAVLSYLDFFSTGVQRVALSTAANMCKK 169 (1661)
Q Consensus 138 ~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~ 169 (1661)
.|.+..+-.++...++.+.++|+.++..++..
T Consensus 165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 165 LGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred ccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 55555555555555666666666666655554
No 133
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=91.54 E-value=12 Score=47.88 Aligned_cols=196 Identities=16% Similarity=0.091 Sum_probs=112.5
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCC--------------------------CHHHHHHHH
Q 000326 25 GEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHES--------------------------NPDIMLLAA 78 (1661)
Q Consensus 25 ~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~--------------------------~~eiq~~A~ 78 (1661)
+|...+++|+..|++ .+ ..+ ......+.|.|...|..-- +........
T Consensus 82 ~d~~~~l~aL~~LT~---~G--rdi-~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll 155 (464)
T PF11864_consen 82 DDFDLRLEALIALTD---NG--RDI-DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLL 155 (464)
T ss_pred hhHHHHHHHHHHHHc---CC--cCc-hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHH
Confidence 366889999998862 22 222 2345677888887774100 111222344
Q ss_pred HHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhcc--CChHHH
Q 000326 79 RALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDF--FSTGVQ 156 (1661)
Q Consensus 79 raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~--~~~~vq 156 (1661)
..+.|+...+......-.-.+.|..+|.-.......+..+.|+..|.-|..-. .+-.+.+..++..|-. ...+..
T Consensus 156 ~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~---~iP~~sl~~~i~vLCsi~~~~~l~ 232 (464)
T PF11864_consen 156 QFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYG---DIPSESLSPCIEVLCSIVNSVSLC 232 (464)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcC---cCChHHHHHHHHHHhhHhcccccc
Confidence 45666666554333321112455555522234444555578888887775421 1223455566666642 233677
Q ss_pred HHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhc------cCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCC--cHH
Q 000326 157 RVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQ------YHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHG--LVT 228 (1661)
Q Consensus 157 r~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~------~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~g--ll~ 228 (1661)
..+..++.|||+..- -..++-.|+.+|. ..+..++.-|...|..+.-+. .......+--.- +++
T Consensus 233 ~~~w~~m~nL~~S~~------g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~--~~~~~~~l~~~~~~vl~ 304 (464)
T PF11864_consen 233 KPSWRTMRNLLKSHL------GHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGS--GEQGYPSLPFSPSSVLP 304 (464)
T ss_pred hhHHHHHHHHHcCcc------HHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhcc--ccCCcceecccHHHHHH
Confidence 788889999998432 2335677777772 345778888888888888762 223333322222 788
Q ss_pred HHHHhhccC
Q 000326 229 QAATLISTS 237 (1661)
Q Consensus 229 ~Lv~LL~~~ 237 (1661)
.+..-|...
T Consensus 305 sl~~al~~~ 313 (464)
T PF11864_consen 305 SLLNALKSN 313 (464)
T ss_pred HHHHHHhCC
Confidence 888888765
No 134
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=91.36 E-value=3.5 Score=55.84 Aligned_cols=211 Identities=18% Similarity=0.155 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhh----ccCCcchhhhcccccHH
Q 000326 27 EGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLC----DVLPSSCAAVVHYGAVT 102 (1661)
Q Consensus 27 ~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa----~~~p~~~~~vV~~GaVp 102 (1661)
....++|+.-|..+-...+. ....+.++|-+|.++.++. .++|..|...|+-+. +..+.....+++ =+.|
T Consensus 437 ~~tK~~ALeLl~~lS~~i~d----e~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~e-YlfP 510 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDD----EVKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPPSDANIFPE-YLFP 510 (1431)
T ss_pred chhHHHHHHHHHHHhhhcch----HHHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCcccchhhHh-hhhh
Confidence 35666666655443333221 2345678999999999774 899988877666655 334433333333 4677
Q ss_pred HHHHHHhcC-Cc-----------HHHHHHHHHHHHHhhc-------cCcc-------------hhhhcCchHHHHhhhcc
Q 000326 103 CFVARLLTI-EY-----------MDLAEQSLQALKKISQ-------EHPT-------------ACLRAGALMAVLSYLDF 150 (1661)
Q Consensus 103 ~Lv~kLL~~-~~-----------~dl~Eqal~aL~nIS~-------~~~~-------------~Il~~GgL~~LL~lLd~ 150 (1661)
.|- .|+.. .. ..++.+|..-|+--=. +.++ .-+..++=..+..+|..
T Consensus 511 ~L~-~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd 589 (1431)
T KOG1240|consen 511 HLN-HLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSD 589 (1431)
T ss_pred hhH-hhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcC
Confidence 777 66655 22 3445555444432211 1111 12233344455666777
Q ss_pred CChHHHHHHHHHHHHhcc--CC-CCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHH-HHhCCc
Q 000326 151 FSTGVQRVALSTAANMCK--KL-PSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDE-LCNHGL 226 (1661)
Q Consensus 151 ~~~~vqr~Al~aLsNlc~--~~-~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~-li~~gl 226 (1661)
..+.+.|..+..|.-||. +. ...++ +++.|...|+..|..+.-.-.--|..++-- +.. -++..+
T Consensus 590 ~~~~Vkr~Lle~i~~LC~FFGk~ksND~-----iLshLiTfLNDkDw~LR~aFfdsI~gvsi~-------VG~rs~seyl 657 (1431)
T KOG1240|consen 590 SPPIVKRALLESIIPLCVFFGKEKSNDV-----ILSHLITFLNDKDWRLRGAFFDSIVGVSIF-------VGWRSVSEYL 657 (1431)
T ss_pred CchHHHHHHHHHHHHHHHHhhhcccccc-----hHHHHHHHhcCccHHHHHHHHhhccceEEE-------EeeeeHHHHH
Confidence 777888888888999997 22 22332 689999999999888775444444443331 111 134567
Q ss_pred HHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCC
Q 000326 227 VTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGS 265 (1661)
Q Consensus 227 l~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s 265 (1661)
+|-|.+-|... .+.++..||.+|..||...
T Consensus 658 lPLl~Q~ltD~---------EE~Viv~aL~~ls~Lik~~ 687 (1431)
T KOG1240|consen 658 LPLLQQGLTDG---------EEAVIVSALGSLSILIKLG 687 (1431)
T ss_pred HHHHHHhccCc---------chhhHHHHHHHHHHHHHhc
Confidence 88888888776 4678999999999988653
No 135
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=90.99 E-value=5.9 Score=53.31 Aligned_cols=185 Identities=18% Similarity=0.183 Sum_probs=126.6
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhc
Q 000326 17 ILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVV 96 (1661)
Q Consensus 17 Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV 96 (1661)
+...+-+. +...+.+|+..+-.++.... ....-...+++-.++.+...+.|..+...|+-+|.-|+..........+
T Consensus 258 l~t~~~s~-~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~ 334 (815)
T KOG1820|consen 258 LETEMLSK-KWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA 334 (815)
T ss_pred HHHhhhcc-chHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence 33345555 89999999999999888654 1123345567888888877777888888999999999998765544333
Q ss_pred ccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCC--Cch
Q 000326 97 HYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLP--SDA 174 (1661)
Q Consensus 97 ~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~--~~~ 174 (1661)
.++.|.|.+++-+. ...+++.++.++-.++.-.+ -.-.++.++.++...++.+...+...+..+.+... ...
T Consensus 335 -~~v~p~lld~lkek-k~~l~d~l~~~~d~~~ns~~----l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~ 408 (815)
T KOG1820|consen 335 -KNVFPSLLDRLKEK-KSELRDALLKALDAILNSTP----LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVE 408 (815)
T ss_pred -HhhcchHHHHhhhc-cHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcc
Confidence 25788888555443 45555555555555544221 12234556666777777766665555555555443 233
Q ss_pred hHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhh
Q 000326 175 ADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEA 210 (1661)
Q Consensus 175 ~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~ 210 (1661)
-..+..++|.+....+..|..|...|..|++-+..-
T Consensus 409 ~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 409 KETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred hhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 345788999999999999999999999998877764
No 136
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.77 E-value=29 Score=41.22 Aligned_cols=117 Identities=18% Similarity=0.236 Sum_probs=87.3
Q ss_pred hHHHHhhhccCChHHHHHHHHHHHHhccCCCCchh-HHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHH
Q 000326 141 LMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAA-DFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLD 219 (1661)
Q Consensus 141 L~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~-~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~ 219 (1661)
+..++.+|.+.++.+++.|+..+.++... +...+ ......++.|..++...++ .+.|..++.|++. ++....
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq----~~~l~~ 77 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ----KEELRK 77 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh----hHHHHH
Confidence 45678888899999999999999998876 22222 2234578889999888887 8999999999998 677777
Q ss_pred HHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 000326 220 ELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLH 274 (1661)
Q Consensus 220 ~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~t~~Ll~ 274 (1661)
.+++. +++.++..+.... ...-..++.+|+|+++........+..
T Consensus 78 ~ll~~-~~k~l~~~~~~p~---------~~lad~~cmlL~NLs~~~~~~~~ll~~ 122 (353)
T KOG2973|consen 78 KLLQD-LLKVLMDMLTDPQ---------SPLADLICMLLSNLSRDDDEVAALLTN 122 (353)
T ss_pred HHHHH-HHHHHHHHhcCcc---------cchHHHHHHHHHHhccCchHHHHHHHh
Confidence 77766 8888888887652 235556778899998876665544433
No 137
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=90.76 E-value=18 Score=41.58 Aligned_cols=199 Identities=13% Similarity=0.110 Sum_probs=127.7
Q ss_pred CCcccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHH----HHh---hcC----CCCHHHHH
Q 000326 7 SSHQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVL----VGL---LNH----ESNPDIML 75 (1661)
Q Consensus 7 ~~~~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~L----v~l---L~~----~~~~eiq~ 75 (1661)
....+.++.+++..|-+. .....|+.+|++.......-..-.....|....| |.+ |.- +.++.-..
T Consensus 21 ~~~~~dk~~~~i~~l~~~---p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVc 97 (293)
T KOG3036|consen 21 NASNNDKAYQLILSLVSP---PTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVC 97 (293)
T ss_pred ccccccchhhHHHHhhCC---chHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHH
Confidence 445667788888888665 6778899999987764432111111122322222 221 111 11122222
Q ss_pred HHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcC-----CcHHHHHHHHHHHHHhhccCcc----hhhhcCchHHHHh
Q 000326 76 LAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTI-----EYMDLAEQSLQALKKISQEHPT----ACLRAGALMAVLS 146 (1661)
Q Consensus 76 ~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~-----~~~dl~Eqal~aL~nIS~~~~~----~Il~~GgL~~LL~ 146 (1661)
. +-+|.......|+.+..++++. ||..+-.+|.. +++-++-.++-+++.+...... ..+..+.++.||.
T Consensus 98 n-aL~LlQcvASHpdTr~~FL~A~-iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr 175 (293)
T KOG3036|consen 98 N-ALALLQCVASHPDTRRAFLRAH-IPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR 175 (293)
T ss_pred H-HHHHHHHHhcCcchHHHHHHcc-ChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence 2 3344444455677888888755 45444344443 4577888888888888776664 4677899999999
Q ss_pred hhccCChHHHHHHHHHHHHhccCC--------CCchhHHHhCcHHHHHHh-hccCCHHHHHHHHHHHHHHHhh
Q 000326 147 YLDFFSTGVQRVALSTAANMCKKL--------PSDAADFVMEAVPLLTNL-LQYHDAKVLEHASVCLTRIAEA 210 (1661)
Q Consensus 147 lLd~~~~~vqr~Al~aLsNlc~~~--------~~~~~~~v~~~lp~L~~l-L~~~D~~v~e~A~~aLs~L~~~ 210 (1661)
.+++.+...+..|+.++--+..+. ..+.|..+..++-.++.- ...++..++..++.|..+|+++
T Consensus 176 ime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 176 IMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN 248 (293)
T ss_pred HHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 999999989988988876655432 234566666666655554 4567899999999999999993
No 138
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.52 E-value=9.8 Score=48.03 Aligned_cols=178 Identities=20% Similarity=0.246 Sum_probs=113.1
Q ss_pred cccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHH-hhcc
Q 000326 9 HQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTH-LCDV 87 (1661)
Q Consensus 9 ~~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~N-La~~ 87 (1661)
.....++-++..+++. ++.+|+.|+.=+.+.+.....+.+ .-..|++..+..++.+.+...+. +++..+.+ ++.-
T Consensus 247 d~~~~i~vlv~~l~ss-~~~iq~~al~Wi~efV~i~g~~~l--~~~s~il~~iLpc~s~~e~~~i~-~~a~~~n~~l~~l 322 (675)
T KOG0212|consen 247 DYDDMINVLVPHLQSS-EPEIQLKALTWIQEFVKIPGRDLL--LYLSGILTAILPCLSDTEEMSIK-EYAQMVNGLLLKL 322 (675)
T ss_pred CcccchhhccccccCC-cHHHHHHHHHHHHHHhcCCCcchh--hhhhhhhhhcccCCCCCccccHH-HHHHHHHHHHHHH
Confidence 4455677788888887 999999999999998887654433 22445566666676654322233 23322221 2211
Q ss_pred --CCcchhhhcccc-cHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcch--hhhcCchHHHHhhhccCChHHHHHHHHH
Q 000326 88 --LPSSCAAVVHYG-AVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTA--CLRAGALMAVLSYLDFFSTGVQRVALST 162 (1661)
Q Consensus 88 --~p~~~~~vV~~G-aVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~--Il~~GgL~~LL~lLd~~~~~vqr~Al~a 162 (1661)
.+..... ++.| +|.+|. +.+..+.++-+-.|+.=+-.|-...++. +........+|.-|...+..+.-.++..
T Consensus 323 ~s~~~~~~~-id~~~ii~vl~-~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~l 400 (675)
T KOG0212|consen 323 VSSERLKEE-IDYGSIIEVLT-KYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSL 400 (675)
T ss_pred Hhhhhhccc-cchHHHHHHHH-HHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHH
Confidence 1111111 4444 456666 8888888888888887777777777764 3334566888888888899999999999
Q ss_pred HHHhccCCCCchhHHHhCcHHHHHHhhc--cCCHHHHH
Q 000326 163 AANMCKKLPSDAADFVMEAVPLLTNLLQ--YHDAKVLE 198 (1661)
Q Consensus 163 LsNlc~~~~~~~~~~v~~~lp~L~~lL~--~~D~~v~e 198 (1661)
++++|....... -.+.+..+|+ .+|+++++
T Consensus 401 la~i~~s~~~~~------~~~fl~sLL~~f~e~~~~l~ 432 (675)
T KOG0212|consen 401 LASICSSSNSPN------LRKFLLSLLEMFKEDTKLLE 432 (675)
T ss_pred HHHHhcCccccc------HHHHHHHHHHHHhhhhHHHH
Confidence 999998654432 2555555533 34555443
No 139
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.51 E-value=44 Score=47.17 Aligned_cols=221 Identities=14% Similarity=0.109 Sum_probs=121.2
Q ss_pred CCCCcccchHHHHHHHhhcCCCHHHHHHHHH----------------HHHHHHhcCCCcccccccccCcHHHHHHhhcCC
Q 000326 5 ASSSHQSGRLKKILSGLRADGEEGKQVEALT----------------QLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHE 68 (1661)
Q Consensus 5 ~~~~~~~~~l~~Ll~~L~s~~D~~~ql~Al~----------------~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~ 68 (1661)
-+.|+.-+.+++|...=..-++|++.+.=++ -+..+....-+. ++. --..+||+|.+.=-++
T Consensus 933 Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~k-l~p-~l~kLIPrLyRY~yDP 1010 (1702)
T KOG0915|consen 933 TPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEK-LEP-YLKKLIPRLYRYQYDP 1010 (1702)
T ss_pred CCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHh-hhh-HHHHhhHHHhhhccCC
Confidence 4445556677777765444456666544221 222222222110 000 0123688888875555
Q ss_pred CCHHHHHHHHHHHHHhhccCCcchhhhccc---ccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcch-hhhc--CchH
Q 000326 69 SNPDIMLLAARALTHLCDVLPSSCAAVVHY---GAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTA-CLRA--GALM 142 (1661)
Q Consensus 69 ~~~eiq~~A~raL~NLa~~~p~~~~~vV~~---GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~-Il~~--GgL~ 142 (1661)
++.+| .|.--|.|..-..+ ..+|+. .+..-|+ .=+.+..=.++|.++-||.-|-+.++.. +.+. -...
T Consensus 1011 -~~~Vq-~aM~sIW~~Li~D~---k~~vd~y~neIl~eLL-~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~ 1084 (1702)
T KOG0915|consen 1011 -DKKVQ-DAMTSIWNALITDS---KKVVDEYLNEILDELL-VNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWE 1084 (1702)
T ss_pred -cHHHH-HHHHHHHHHhccCh---HHHHHHHHHHHHHHHH-HhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 47888 44444445443221 223332 2333333 2233444688999999999999887753 3222 1122
Q ss_pred HHHhhhccCChHHH---HHHHHHHHHhccCC-----CCchhHHHhCcHHHHHHh-hccCCHHHHHHHHHHHHHHHhhcCC
Q 000326 143 AVLSYLDFFSTGVQ---RVALSTAANMCKKL-----PSDAADFVMEAVPLLTNL-LQYHDAKVLEHASVCLTRIAEAFAS 213 (1661)
Q Consensus 143 ~LL~lLd~~~~~vq---r~Al~aLsNlc~~~-----~~~~~~~v~~~lp~L~~l-L~~~D~~v~e~A~~aLs~L~~~~~~ 213 (1661)
++....|.-...+. ..++.+++-+|... +......+..++|.|..- +-+.-++|..-++..+..|++.
T Consensus 1085 ~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Ks--- 1161 (1702)
T KOG0915|consen 1085 AAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKS--- 1161 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHh---
Confidence 23333343322332 34677777777622 333445566678887765 3477788999999999999986
Q ss_pred CHHHHHHHHhCCcHHHHHHhhccC
Q 000326 214 SPDKLDELCNHGLVTQAATLISTS 237 (1661)
Q Consensus 214 ~~e~~~~li~~gll~~Lv~LL~~~ 237 (1661)
.+..+...+ ..+++.|++....-
T Consensus 1162 sg~~lkP~~-~~LIp~ll~~~s~l 1184 (1702)
T KOG0915|consen 1162 SGKELKPHF-PKLIPLLLNAYSEL 1184 (1702)
T ss_pred chhhhcchh-hHHHHHHHHHcccc
Confidence 555444333 35777777777553
No 140
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=90.47 E-value=5.4 Score=53.34 Aligned_cols=261 Identities=13% Similarity=0.151 Sum_probs=153.5
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000326 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1661)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~ 91 (1661)
+.++.|...++-. .+.....++.++..++... +..........+..++..|+.-.+ ..|.....||++|+......
T Consensus 306 s~i~~L~~~~~l~-r~~~v~~cl~~l~~~~~~~--~~~~~~~~~~~l~~i~~sm~~~~s-~~~i~~~~CL~~i~~~~~~~ 381 (699)
T KOG3665|consen 306 SSIQALTYYLNLK-RPSEVSRCLNELLDLLKSL--DSTREYDISECLKLIINSMNTFSS-SNQIQGSACLIHIVKHTKQR 381 (699)
T ss_pred HHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHh--hhhhhhhHHHHHHHHHHHHHhcCC-hhhhhHHHHHHHHHHhhhhc
Confidence 3455555555443 5667778888887777743 111334555677777777775443 67777788888888765311
Q ss_pred hhhhcccccHHHHHHHHhcCC------cHHHHHH----------------------------------------------
Q 000326 92 CAAVVHYGAVTCFVARLLTIE------YMDLAEQ---------------------------------------------- 119 (1661)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~------~~dl~Eq---------------------------------------------- 119 (1661)
....-..-++..|++...... ...+.+.
T Consensus 382 l~~~~~~~~l~~LLn~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (699)
T KOG3665|consen 382 LSPLLVSLLLKVLLNLVEKLDTLDSNDELTLCNSIILLLSLLVSRRKLLSVLDHHEQDNIQQRLTVCLSISTACQVVSIT 461 (699)
T ss_pred cChHHHHHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHhhcchhHHHHHHHH
Confidence 111111112233321111000 0111110
Q ss_pred ------------------------HHH-----HHHHhhccCcc---hhhhcCchHHHHhhhc-cCChHHHHHHHHHHHHh
Q 000326 120 ------------------------SLQ-----ALKKISQEHPT---ACLRAGALMAVLSYLD-FFSTGVQRVALSTAANM 166 (1661)
Q Consensus 120 ------------------------al~-----aL~nIS~~~~~---~Il~~GgL~~LL~lLd-~~~~~vqr~Al~aLsNl 166 (1661)
+.. +|.++..+.+. .+++.||+..++..+. |....+++.++..+.|+
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~ 541 (699)
T KOG3665|consen 462 KVNVGELGIVLTLLLRIKLRKIYWCDDVLEFTALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNL 541 (699)
T ss_pred HhccchhHHHHHHHHHHHhhccchhhHHHHHHHHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 111 22355555554 6899999999999998 45678999999999999
Q ss_pred ccCCCCchhHHHhCcHH--HHHHhhccCC-HHHHHHHHHHHHHHHhhcCCCHHHHHHHHhC-------------------
Q 000326 167 CKKLPSDAADFVMEAVP--LLTNLLQYHD-AKVLEHASVCLTRIAEAFASSPDKLDELCNH------------------- 224 (1661)
Q Consensus 167 c~~~~~~~~~~v~~~lp--~L~~lL~~~D-~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~------------------- 224 (1661)
+...+..........+. .+..++..-+ .+.--.|+..|+.|... .++........
T Consensus 542 ~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~ersY~~~siLa~ll~~---~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~ 618 (699)
T KOG3665|consen 542 AEVLELRELLMIFEFIDFSVFKVLLNKWDSIERSYNAASILALLLSD---SEKTTECVFRNSVNELLVEAISRWLTSEIR 618 (699)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhC---CCcCccccchHHHHHHHHHHhhccCcccee
Confidence 98554443333333322 4444554444 48888888888887763 11111111111
Q ss_pred ----CcHHH-HHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcC
Q 000326 225 ----GLVTQ-AATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSG 287 (1661)
Q Consensus 225 ----gll~~-Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~ 287 (1661)
..+.. +..++... ..+..+.-|++++.+++...++..+.+.+.|.+..+..+-..
T Consensus 619 ~~~~~~f~~~~~~il~~s--------~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (699)
T KOG3665|consen 619 VINDRSFFPRILRILRLS--------KSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVL 678 (699)
T ss_pred ehhhhhcchhHHHHhccc--------CCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchh
Confidence 11222 44444333 356788999999999999999988888889988887775543
No 141
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=90.27 E-value=3.7 Score=49.96 Aligned_cols=157 Identities=24% Similarity=0.255 Sum_probs=114.3
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000326 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1661)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~ 91 (1661)
..++.+.+.|.+. ++.++..|+..|. .+.....+|.|+.+|..+.+..+...|+++|..+-...
T Consensus 74 ~av~~l~~~l~d~-~~~vr~~a~~aLg------------~~~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~--- 137 (335)
T COG1413 74 EAVPLLRELLSDE-DPRVRDAAADALG------------ELGDPEAVPPLVELLENDENEGVRAAAARALGKLGDER--- 137 (335)
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHH------------ccCChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh---
Confidence 3566666777665 8888888888553 23344569999999996557889999999999886422
Q ss_pred hhhhcccccHHHHHHHHhcCCc------------HHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhccCChHHHHHH
Q 000326 92 CAAVVHYGAVTCFVARLLTIEY------------MDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVA 159 (1661)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~------------~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~A 159 (1661)
++..|+ .++.... ..++.+++.+|+++-. .-.+..++.++.+....+++.|
T Consensus 138 --------a~~~l~-~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~--------~~~~~~l~~~l~~~~~~vr~~A 200 (335)
T COG1413 138 --------ALDPLL-EALQDEDSGSAAAALDAALLDVRAAAAEALGELGD--------PEAIPLLIELLEDEDADVRRAA 200 (335)
T ss_pred --------hhHHHH-HHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC--------hhhhHHHHHHHhCchHHHHHHH
Confidence 366666 4444433 2466667777776643 3456778888888777888888
Q ss_pred HHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHh
Q 000326 160 LSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAE 209 (1661)
Q Consensus 160 l~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~ 209 (1661)
..++..+.... ..+.+.+...+...+..+...++.+|.++-.
T Consensus 201 a~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~ 242 (335)
T COG1413 201 ASALGQLGSEN--------VEAADLLVKALSDESLEVRKAALLALGEIGD 242 (335)
T ss_pred HHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc
Confidence 88888877643 4567888888999999999999998888776
No 142
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=90.03 E-value=3.3 Score=49.79 Aligned_cols=175 Identities=13% Similarity=0.050 Sum_probs=115.8
Q ss_pred ccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchh---
Q 000326 99 GAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAA--- 175 (1661)
Q Consensus 99 GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~--- 175 (1661)
+.+..|+..-+.+.+.++++.++.|||-.|--..+...+ .+..+++.+......++-.|+.++..+........+
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~--~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~ 103 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE--HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSE 103 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccch
Confidence 455555555667888999999999999998766543222 255566666656888999999999998873222211
Q ss_pred ------HHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChh
Q 000326 176 ------DFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTP 249 (1661)
Q Consensus 176 ------~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~ 249 (1661)
.....++..+...|.+.++++..-|+-++++|.-.-.-.+ ...++.+|+-+--++... -+..
T Consensus 104 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~-------~~~vL~~Lll~yF~p~t~-----~~~~ 171 (298)
T PF12719_consen 104 SDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD-------PPKVLSRLLLLYFNPSTE-----DNQR 171 (298)
T ss_pred hccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc-------HHHHHHHHHHHHcCcccC-----CcHH
Confidence 1234678899999999999999999999999775311111 134555665555444211 1222
Q ss_pred HHHHHH-HHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCC
Q 000326 250 TYTGLI-RLLSTCASGSPLCAKTLLHLGISGILKDILSGSG 289 (1661)
Q Consensus 250 i~~~al-r~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~ 289 (1661)
...++ ..+-..|..++.. |..+...+++++..+.....
T Consensus 172 -LrQ~L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 172 -LRQCLSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAPD 210 (298)
T ss_pred -HHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCcc
Confidence 33333 3444567777665 56777888899999887655
No 143
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=90.01 E-value=1.5 Score=43.64 Aligned_cols=77 Identities=17% Similarity=0.184 Sum_probs=59.2
Q ss_pred HHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcc
Q 000326 157 RVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLIST 236 (1661)
Q Consensus 157 r~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~ 236 (1661)
+-++++|+.++...+..-......++|.+...+..+|.+|...||.+|.+|+..+ ..+.+. . -..++..|.+++..
T Consensus 4 ~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~--~~~~l~-~-f~~IF~~L~kl~~D 79 (97)
T PF12755_consen 4 KGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVA--RGEILP-Y-FNEIFDALCKLSAD 79 (97)
T ss_pred hHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH--HHHHHH-H-HHHHHHHHHHHHcC
Confidence 4578888888887766666778899999999999999999999999999999862 222222 1 12577788888866
Q ss_pred C
Q 000326 237 S 237 (1661)
Q Consensus 237 ~ 237 (1661)
.
T Consensus 80 ~ 80 (97)
T PF12755_consen 80 P 80 (97)
T ss_pred C
Confidence 5
No 144
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.36 E-value=11 Score=51.53 Aligned_cols=190 Identities=16% Similarity=0.164 Sum_probs=119.4
Q ss_pred HhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHh---cCCcHHHHHHHHHHHHHhhccCcc---hhh
Q 000326 63 GLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLL---TIEYMDLAEQSLQALKKISQEHPT---ACL 136 (1661)
Q Consensus 63 ~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL---~~~~~dl~Eqal~aL~nIS~~~~~---~Il 136 (1661)
.......+..+|.-|-+.|.-++.. |.. ...+.. -|..+.+.|+ +....-.+...+.||..|-..++. ..+
T Consensus 660 ~~~e~~~~~~vQkK~yrlL~~l~~~-~s~-~~~~~q-~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i 736 (1176)
T KOG1248|consen 660 PEFENSSSTKVQKKAYRLLEELSSS-PSG-EGLVEQ-RIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI 736 (1176)
T ss_pred HHhhccccHHHHHHHHHHHHHHhcC-Cch-hhHHHH-HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 3333444689999999999999987 322 222221 1222222232 223344556677777777666663 223
Q ss_pred hcCchHHHHhhhccCChHHHHHHHHHHHHhcc--C---C-CCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhh
Q 000326 137 RAGALMAVLSYLDFFSTGVQRVALSTAANMCK--K---L-PSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEA 210 (1661)
Q Consensus 137 ~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~--~---~-~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~ 210 (1661)
..-....+|.+ ...+....++|..+|.++|+ . . ..+....+.+.++.|...+-.....++...+.++..|...
T Consensus 737 ~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e 815 (1176)
T KOG1248|consen 737 PKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE 815 (1176)
T ss_pred HHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence 33344445555 88899999999999999993 1 1 1123567788888888876666666665558888888875
Q ss_pred cCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHH
Q 000326 211 FASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLC 268 (1661)
Q Consensus 211 ~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~ 268 (1661)
| .+.+..-.-.+++..++-.|... +..+...|++.+..++..-|+.
T Consensus 816 ~---~~~ld~~~l~~li~~V~~~L~s~---------sreI~kaAI~fikvlv~~~pe~ 861 (1176)
T KOG1248|consen 816 F---KNILDDETLEKLISMVCLYLASN---------SREIAKAAIGFIKVLVYKFPEE 861 (1176)
T ss_pred H---hccccHHHHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHHHHcCCHH
Confidence 3 22222222234555566666554 7889999999999999886664
No 145
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=89.20 E-value=1.7 Score=47.26 Aligned_cols=146 Identities=14% Similarity=0.152 Sum_probs=91.8
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhh
Q 000326 57 FAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACL 136 (1661)
Q Consensus 57 ~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il 136 (1661)
+++.|.++|+.+.+..+..+|.|+|+.|=..+| ++...+..+ .+. .-............+. ...++. ..+...
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP-~~~k~~~~~-~~~---~~~~~~~~~~~~~~l~-~~~~~~-~~ee~y 83 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDP-YKHKSIQKS-LDS---KSSENSNDESTDISLP-MMGISP-SSEEYY 83 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCc-HHHhccccc-CCc---cccccccccchhhHHh-hccCCC-chHHHH
Confidence 678899999988889999999999999976666 322222111 000 0000001111111111 111111 122333
Q ss_pred hcCchHHHHhhhccCChHH-HHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHh
Q 000326 137 RAGALMAVLSYLDFFSTGV-QRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAE 209 (1661)
Q Consensus 137 ~~GgL~~LL~lLd~~~~~v-qr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~ 209 (1661)
-.-++..|+..|...+... +..++.++.+++.............++|.+.+.++..+....+...+-|+.|+.
T Consensus 84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4446778888887654433 335788888888766666677889999999999998877888888888877764
No 146
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=88.88 E-value=3.4 Score=44.63 Aligned_cols=123 Identities=14% Similarity=0.151 Sum_probs=94.1
Q ss_pred cccccCcHHHHHHhhcCCCC-----HHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCC--cHHHHHHHHHH
Q 000326 51 TFSVDSFAPVLVGLLNHESN-----PDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIE--YMDLAEQSLQA 123 (1661)
Q Consensus 51 ~~~~~g~vp~Lv~lL~~~~~-----~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~--~~dl~Eqal~a 123 (1661)
.|+..+.+..|++++..... .++...+..|+..+++..--+++ .++...|...+ .....+ +..+.+.|+..
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd-~l~~~FI~Kia-~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWD-TLSDSFIKKIA-SYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchh-hccHHHHHHHH-HHHccccccchHHHHHHHH
Confidence 57788889999999986653 46777888889999986543443 44445566666 344433 58899999999
Q ss_pred HHHhhccCcc---hhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchh
Q 000326 124 LKKISQEHPT---ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAA 175 (1661)
Q Consensus 124 L~nIS~~~~~---~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~ 175 (1661)
|+++...++. .|-++=-++.|+..|...+..+|.+|+..+--+..+.+..+.
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r 138 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKR 138 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHH
Confidence 9999987775 466677889999999999999999999999988887655443
No 147
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.75 E-value=5.7 Score=51.74 Aligned_cols=171 Identities=13% Similarity=0.119 Sum_probs=117.3
Q ss_pred CHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhc
Q 000326 70 NPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLD 149 (1661)
Q Consensus 70 ~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd 149 (1661)
.+-+...||.||..+-+..++....+++ ++.+||.-..+-+.-.|+.|.+-+|-+.-+.| ++--..+.++|-
T Consensus 156 s~yVRk~AA~AIpKLYsLd~e~k~qL~e------~I~~LLaD~splVvgsAv~AF~evCPerldLI--HknyrklC~ll~ 227 (968)
T KOG1060|consen 156 SPYVRKTAAHAIPKLYSLDPEQKDQLEE------VIKKLLADRSPLVVGSAVMAFEEVCPERLDLI--HKNYRKLCRLLP 227 (968)
T ss_pred cHHHHHHHHHhhHHHhcCChhhHHHHHH------HHHHHhcCCCCcchhHHHHHHHHhchhHHHHh--hHHHHHHHhhcc
Confidence 5788889999999999888888876654 34478888888999999999999987654433 334455555555
Q ss_pred cCChHHHHHHHHHHHHhccCC-CCc-------------------------hhH---HHhCcHHHHHHhhccCCHHHHHHH
Q 000326 150 FFSTGVQRVALSTAANMCKKL-PSD-------------------------AAD---FVMEAVPLLTNLLQYHDAKVLEHA 200 (1661)
Q Consensus 150 ~~~~~vqr~Al~aLsNlc~~~-~~~-------------------------~~~---~v~~~lp~L~~lL~~~D~~v~e~A 200 (1661)
.-+.=-|-.++.+|..-||.. +.+ .+. -..-.+.....+|++.++.|+-.+
T Consensus 228 dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~ 307 (968)
T KOG1060|consen 228 DVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAV 307 (968)
T ss_pred chhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHH
Confidence 444444555666666666621 111 000 122245566667889999999999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHH
Q 000326 201 SVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLC 268 (1661)
Q Consensus 201 ~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~ 268 (1661)
|.++..++-. ... ..+++.|++||... ..++..+|+.|..|+...+..
T Consensus 308 aql~y~lAP~-----~~~-----~~i~kaLvrLLrs~----------~~vqyvvL~nIa~~s~~~~~l 355 (968)
T KOG1060|consen 308 AQLFYHLAPK-----NQV-----TKIAKALVRLLRSN----------REVQYVVLQNIATISIKRPTL 355 (968)
T ss_pred HhHHHhhCCH-----HHH-----HHHHHHHHHHHhcC----------CcchhhhHHHHHHHHhcchhh
Confidence 9999998863 222 23578899999764 457788888888888765554
No 148
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=88.72 E-value=0.77 Score=45.86 Aligned_cols=60 Identities=13% Similarity=0.166 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhhccCCcchhhhcccccHHHHHHHH-hcCCcHHHHHHHHHHHHHhhccCcc
Q 000326 74 MLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARL-LTIEYMDLAEQSLQALKKISQEHPT 133 (1661)
Q Consensus 74 q~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kL-L~~~~~dl~Eqal~aL~nIS~~~~~ 133 (1661)
+....++|+|++-.++.....|.+.|+||.+++.. .+-.++-++|.|+||+.|++..++.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~e 63 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPE 63 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHH
Confidence 45678899999999999999999999999998533 2334589999999999999988774
No 149
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.36 E-value=9.2 Score=50.44 Aligned_cols=187 Identities=18% Similarity=0.227 Sum_probs=126.1
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000326 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1661)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~ 91 (1661)
.++++-+..+..+ .+.++-.|++.|++++..-... .-+...+++..+.+.|++++ +-+-+.|.+.++-+|+..|
T Consensus 727 e~~qeai~sl~d~-qvpik~~gL~~l~~l~e~r~~~--~~~~~ekvl~i~ld~Lkded-syvyLnaI~gv~~Lcevy~-- 800 (982)
T KOG4653|consen 727 EPLQEAISSLHDD-QVPIKGYGLQMLRHLIEKRKKA--TLIQGEKVLAIALDTLKDED-SYVYLNAIRGVVSLCEVYP-- 800 (982)
T ss_pred HHHHHHHHHhcCC-cccchHHHHHHHHHHHHhcchh--hhhhHHHHHHHHHHHhcccC-ceeeHHHHHHHHHHHHhcc--
Confidence 3466666667665 6788999999999999854222 23667789999999999875 7788889998888888655
Q ss_pred hhhhcccccHHHHHHHHhcCCc---HHHHHHHHHHHHHhhccCcchhhh--cCchHHHHhhhccCChHHHHHHHHHHHHh
Q 000326 92 CAAVVHYGAVTCFVARLLTIEY---MDLAEQSLQALKKISQEHPTACLR--AGALMAVLSYLDFFSTGVQRVALSTAANM 166 (1661)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~---~dl~Eqal~aL~nIS~~~~~~Il~--~GgL~~LL~lLd~~~~~vqr~Al~aLsNl 166 (1661)
..++|-|.+.-.+... .|-+--+=.|+.++.+.-++.+.. +-.+..++.-++..+....-.++.++.+|
T Consensus 801 ------e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~L 874 (982)
T KOG4653|consen 801 ------EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQL 874 (982)
T ss_pred ------hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHH
Confidence 3467777753443322 233333446777777766654433 23445566666755445555689999999
Q ss_pred ccCCCCchhHHHhCcHHHHHHhhccCC-HHHHHHHHHHHHHHHhh
Q 000326 167 CKKLPSDAADFVMEAVPLLTNLLQYHD-AKVLEHASVCLTRIAEA 210 (1661)
Q Consensus 167 c~~~~~~~~~~v~~~lp~L~~lL~~~D-~~v~e~A~~aLs~L~~~ 210 (1661)
|.-....-.+.+.+++-.+..+....+ .-+...|...+..+-.|
T Consensus 875 cq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 875 CQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNG 919 (982)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhc
Confidence 984432222356677777777777655 56677777777777776
No 150
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=88.11 E-value=0.86 Score=55.64 Aligned_cols=140 Identities=19% Similarity=0.168 Sum_probs=89.7
Q ss_pred CHHHHHHHHHHHHHhhccCCcchhhh--cccccHHHHHHHHhcC------CcHHHHHHHHHHHHHhhccC------cchh
Q 000326 70 NPDIMLLAARALTHLCDVLPSSCAAV--VHYGAVTCFVARLLTI------EYMDLAEQSLQALKKISQEH------PTAC 135 (1661)
Q Consensus 70 ~~eiq~~A~raL~NLa~~~p~~~~~v--V~~GaVp~Lv~kLL~~------~~~dl~Eqal~aL~nIS~~~------~~~I 135 (1661)
....|..|+|+++||.++.-..+-.+ ...-++-.++.+++.. ....+...++.+|+|+.+-- ....
T Consensus 446 ~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e 525 (728)
T KOG4535|consen 446 SLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAE 525 (728)
T ss_pred hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHH
Confidence 47889999999999987532221110 1112333344344332 23678889999999997631 1123
Q ss_pred hhcCchHHHHhhh-ccCChHHHHHHHHHHHHhccCC--CCchhHHHhCcHHHHHHhh-ccCCHHHHHHHHHHHHHHHh
Q 000326 136 LRAGALMAVLSYL-DFFSTGVQRVALSTAANMCKKL--PSDAADFVMEAVPLLTNLL-QYHDAKVLEHASVCLTRIAE 209 (1661)
Q Consensus 136 l~~GgL~~LL~lL-d~~~~~vqr~Al~aLsNlc~~~--~~~~~~~v~~~lp~L~~lL-~~~D~~v~e~A~~aLs~L~~ 209 (1661)
+..|.+..++.-. -...-.+|=+|+.+++|+.++. +-.+......++|+|..|+ ++.+-+|..+|..+|+--..
T Consensus 526 ~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 526 IIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred HHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 3334443333322 2345678999999999999865 3344445567899999995 56788999999998876655
No 151
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=87.98 E-value=10 Score=44.72 Aligned_cols=176 Identities=18% Similarity=0.190 Sum_probs=110.4
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCC----cchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCc
Q 000326 57 FAPVLVGLLNHESNPDIMLLAARALTHLCDVLP----SSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHP 132 (1661)
Q Consensus 57 ~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p----~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~ 132 (1661)
+.|.|-.=|..+ +..++..||.-+..|.+.+. ..+..||++|+.|.++ -.+-.++.+++..|+..|..|+.-..
T Consensus 83 lmpdLQrGLiad-dasVKiLackqigcilEdcDtnaVseillvvNaeilklil-dcIggeddeVAkAAiesikrialfpa 160 (524)
T KOG4413|consen 83 LMPDLQRGLIAD-DASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLIL-DCIGGEDDEVAKAAIESIKRIALFPA 160 (524)
T ss_pred hhHHHHhcccCC-cchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHH-HHHcCCcHHHHHHHHHHHHHHHhcHH
Confidence 344444444444 36788899999999988765 2334578999999999 77788889999999999999998655
Q ss_pred c--hhhhcCchHHHHhh-hccCChHHHH-HHHHHHHHhccCCC-CchhHHHhCcHHHHHHhhcc-CCHHHHHHHHHHHHH
Q 000326 133 T--ACLRAGALMAVLSY-LDFFSTGVQR-VALSTAANMCKKLP-SDAADFVMEAVPLLTNLLQY-HDAKVLEHASVCLTR 206 (1661)
Q Consensus 133 ~--~Il~~GgL~~LL~l-Ld~~~~~vqr-~Al~aLsNlc~~~~-~~~~~~v~~~lp~L~~lL~~-~D~~v~e~A~~aLs~ 206 (1661)
. .|+....+..+-.. |.-....+.| ..+..+..+..-.+ ......-.+.+..|..-|.- .|.-|+.+++-.+..
T Consensus 161 aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvte 240 (524)
T KOG4413|consen 161 ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTE 240 (524)
T ss_pred HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHH
Confidence 3 46666555433211 1111112222 22233333332111 11222234556666555665 677777777777888
Q ss_pred HHhhcCCCHHHHHHHHhCCcHHHHHHhhccCC
Q 000326 207 IAEAFASSPDKLDELCNHGLVTQAATLISTSN 238 (1661)
Q Consensus 207 L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~ 238 (1661)
|+. .....+.+...|+++.+.+++.-.+
T Consensus 241 Lae----teHgreflaQeglIdlicnIIsGad 268 (524)
T KOG4413|consen 241 LAE----TEHGREFLAQEGLIDLICNIISGAD 268 (524)
T ss_pred HHH----HhhhhhhcchhhHHHHHHHHhhCCC
Confidence 887 4455667778899999999987653
No 152
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=87.92 E-value=8.2 Score=47.85 Aligned_cols=186 Identities=16% Similarity=0.267 Sum_probs=116.3
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000326 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1661)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~ 91 (1661)
.-+..++.+++..+....+-+|+.+|=++++....-.+... -..++-.++++|.+..+.-+...|.|.|.-|+...|
T Consensus 286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~-f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~-- 362 (516)
T KOG2956|consen 286 ALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQH-FAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP-- 362 (516)
T ss_pred HHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHH-HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhch--
Confidence 35566777776554567888899989888876533222211 123567788899875568899999999999998544
Q ss_pred hhhhcccccHHHHHHHHhcCCc---H---HHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhccCChHHHHHHHHHHHH
Q 000326 92 CAAVVHYGAVTCFVARLLTIEY---M---DLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAAN 165 (1661)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~---~---dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsN 165 (1661)
..+.+. +--++| |+|+... . .++|++ |+.-++...|-..+.. +.+++.- -+...--.++..+..
T Consensus 363 -~~l~Ds-tE~ai~-K~Leaa~ds~~~v~~~Aeed--~~~~las~~P~~~I~~--i~~~Ilt---~D~~~~~~~iKm~Tk 432 (516)
T KOG2956|consen 363 -ARLFDS-TEIAIC-KVLEAAKDSQDEVMRVAEED--CLTTLASHLPLQCIVN--ISPLILT---ADEPRAVAVIKMLTK 432 (516)
T ss_pred -Hhhhch-HHHHHH-HHHHHHhCCchhHHHHHHHH--HHHHHHhhCchhHHHH--HhhHHhc---CcchHHHHHHHHHHH
Confidence 344432 223344 5555332 2 233332 3334445455322211 2222221 222233345556777
Q ss_pred hccCCCCchh-HHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhh
Q 000326 166 MCKKLPSDAA-DFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEA 210 (1661)
Q Consensus 166 lc~~~~~~~~-~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~ 210 (1661)
+|...+.+.. ..+.++.|.++.--++....|...|..||..|+..
T Consensus 433 l~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~ 478 (516)
T KOG2956|consen 433 LFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNR 478 (516)
T ss_pred HHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence 8877766554 34678999999999999999999999999999875
No 153
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=87.82 E-value=12 Score=41.29 Aligned_cols=110 Identities=22% Similarity=0.220 Sum_probs=80.1
Q ss_pred CHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCch-HHHHhhh
Q 000326 70 NPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGAL-MAVLSYL 148 (1661)
Q Consensus 70 ~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL-~~LL~lL 148 (1661)
++.++..+..+|+-|+.--| .+++ ..+|.+. ..|..+++.++.+|+.+|..+.... .+--.|-+ ..++..|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~----~~ve-~~~~~l~-~~L~D~~~~VR~~al~~Ls~Li~~d--~ik~k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP----NLVE-PYLPNLY-KCLRDEDPLVRKTALLVLSHLILED--MIKVKGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc----HHHH-hHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHcC--ceeehhhhhHHHHHHH
Confidence 47788899999999987655 3333 3578888 8899999999999999999997643 33334444 7788888
Q ss_pred ccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhc
Q 000326 149 DFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQ 190 (1661)
Q Consensus 149 d~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~ 190 (1661)
...+..++..|..++..+.....+. .+...+|-+...|+
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~~~~~---~i~~~~~e~i~~l~ 111 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKKRNPN---IIYNNFPELISSLN 111 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHhccch---HHHHHHHHHHHHHh
Confidence 8889999999999999988763222 23344444444443
No 154
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=87.78 E-value=8.6 Score=48.35 Aligned_cols=224 Identities=11% Similarity=0.098 Sum_probs=121.8
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccc-------c------ccCcHHHHHHhhcCCCCHHHHHHHHHHHH
Q 000326 16 KILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTF-------S------VDSFAPVLVGLLNHESNPDIMLLAARALT 82 (1661)
Q Consensus 16 ~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~-------~------~~g~vp~Lv~lL~~~~~~eiq~~A~raL~ 82 (1661)
.|+..++.. |...|+.-++.++.-++|.++...-.. . ...+.|-|-..|++. -.-+++++||+++
T Consensus 212 GlLyq~kr~-dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k-~emV~lE~Ar~v~ 289 (898)
T COG5240 212 GLLYQSKRT-DKMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDK-FEMVFLEAARAVC 289 (898)
T ss_pred HHHHHHhcc-cHHHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCc-chhhhHHHHHHHH
Confidence 356666665 888888888888888877765321000 0 011344444444433 2457889999999
Q ss_pred HhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcC-chHHHHhhhccCChHHHHHHHH
Q 000326 83 HLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAG-ALMAVLSYLDFFSTGVQRVALS 161 (1661)
Q Consensus 83 NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~G-gL~~LL~lLd~~~~~vqr~Al~ 161 (1661)
.++.-+ .....++ -+|..|- .+|.+...-++-.|+.+|..||...|..|.-++ -+..| +...+-.+ +..
T Consensus 290 ~~~~~n--v~~~~~~-~~vs~L~-~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsL---Isd~Nr~I---sty 359 (898)
T COG5240 290 ALSEEN--VGSQFVD-QTVSSLR-TFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESL---ISDENRTI---STY 359 (898)
T ss_pred HHHHhc--cCHHHHH-HHHHHHH-HHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHH---hhcccccc---hHH
Confidence 887644 1112222 3566777 788899999999999999999988887554443 23333 32222222 333
Q ss_pred HHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCC
Q 000326 162 TAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGG 241 (1661)
Q Consensus 162 aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~ 241 (1661)
++..+.+.-...........+|.++.=+...=+.|+.+|+..|+.+-.. ... . .+.-|...|....
T Consensus 360 AITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~---k~~---s-----~l~FL~~~L~~eG--- 425 (898)
T COG5240 360 AITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPS---KKL---S-----YLDFLGSSLLQEG--- 425 (898)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcH---HHH---H-----HHHHHHHHHHhcc---
Confidence 4444444222223222333334333333333355666666666654432 111 1 1333444443321
Q ss_pred CCCCCChhHHHHHHHHHHHHhcCCHHHHH
Q 000326 242 GQASLSTPTYTGLIRLLSTCASGSPLCAK 270 (1661)
Q Consensus 242 ~~~~~s~~i~~~alr~L~nLas~s~~~t~ 270 (1661)
..+....++.+|+-+....|+...
T Consensus 426 -----g~eFK~~~Vdaisd~~~~~p~skE 449 (898)
T COG5240 426 -----GLEFKKYMVDAISDAMENDPDSKE 449 (898)
T ss_pred -----cchHHHHHHHHHHHHHhhCchHHH
Confidence 344566666666666666555443
No 155
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=87.58 E-value=1.5 Score=43.93 Aligned_cols=67 Identities=18% Similarity=0.269 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhccCCCCc-hhHHHhCcHHHHHHhhc--cCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhC
Q 000326 155 VQRVALSTAANMCKKLPSD-AADFVMEAVPLLTNLLQ--YHDAKVLEHASVCLTRIAEAFASSPDKLDELCNH 224 (1661)
Q Consensus 155 vqr~Al~aLsNlc~~~~~~-~~~~v~~~lp~L~~lL~--~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~ 224 (1661)
+.+..+.+|+|+|-+.+.. +.....+.+|.|.+... ..+|-+.+-|.||+-+|+++ ++++.+.+.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~---n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEG---NPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhC---CHHHHHHHHhc
Confidence 3567899999999866433 33334578999988844 45699999999999999998 88877766643
No 156
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=87.09 E-value=9.3 Score=45.09 Aligned_cols=233 Identities=12% Similarity=0.083 Sum_probs=142.0
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCC-CHHHHHHHHHHHHHhhccCCcchhh
Q 000326 16 KILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHES-NPDIMLLAARALTHLCDVLPSSCAA 94 (1661)
Q Consensus 16 ~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~-~~eiq~~A~raL~NLa~~~p~~~~~ 94 (1661)
+++.+|.+.=|+-.++-|++++.+++..-.-..+ .......-.+++++|+..- ..++|..+.-|+.-+. .++++++.
T Consensus 152 eyLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i-~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lT-f~~~~aqd 229 (432)
T COG5231 152 EYLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKI-EWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILT-FSKECAQD 229 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH-HHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh-cCHHHHHH
Confidence 4444453333677888888888777664321111 1224456788999997532 3678887776665554 34445532
Q ss_pred hcc-cccHHHHHHHHhcCC-cHHHHHHHHHHHHHhhccCcc----hhhhcCchHHHHhhhcc--C-ChHHHHH---H---
Q 000326 95 VVH-YGAVTCFVARLLTIE-YMDLAEQSLQALKKISQEHPT----ACLRAGALMAVLSYLDF--F-STGVQRV---A--- 159 (1661)
Q Consensus 95 vV~-~GaVp~Lv~kLL~~~-~~dl~Eqal~aL~nIS~~~~~----~Il~~GgL~~LL~lLd~--~-~~~vqr~---A--- 159 (1661)
|-. -..|.-|+ ++..+. ...+-.-|+..+.|++...++ ..+-.|.+.++++.|.. . +..+... .
T Consensus 230 i~K~~dli~dli-~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~ 308 (432)
T COG5231 230 IDKMDDLINDLI-AIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSR 308 (432)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 221 12344444 333332 355666788888888876654 34456767788887742 1 1111111 1
Q ss_pred -------HHHH----HH-----hccCCCCch-------h-HHHh---CcHHHHHHhhccCCHH-HHHHHHHHHHHHHhhc
Q 000326 160 -------LSTA----AN-----MCKKLPSDA-------A-DFVM---EAVPLLTNLLQYHDAK-VLEHASVCLTRIAEAF 211 (1661)
Q Consensus 160 -------l~aL----sN-----lc~~~~~~~-------~-~~v~---~~lp~L~~lL~~~D~~-v~e~A~~aLs~L~~~~ 211 (1661)
+.+. +. +|-..++.+ . ..++ .++..|..+|++..+. .+.-||.=+..++..
T Consensus 309 l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~- 387 (432)
T COG5231 309 LVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRA- 387 (432)
T ss_pred HHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHh-
Confidence 1111 11 222222111 1 1122 3677888889888665 777788888888886
Q ss_pred CCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhc
Q 000326 212 ASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCAS 263 (1661)
Q Consensus 212 ~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas 263 (1661)
.|+....+...|+=..+++||.++ ++.+.-.|+.++-.+.+
T Consensus 388 --~PE~~~vl~Kyg~k~~im~L~nh~---------d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 388 --SPEINAVLSKYGVKEIIMNLINHD---------DDDVKFEALQALQTCIS 428 (432)
T ss_pred --CchHHHHHHHhhhHHHHHHHhcCC---------CchhhHHHHHHHHHHHh
Confidence 899999999999999999999998 57799999998876543
No 157
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=87.06 E-value=13 Score=46.26 Aligned_cols=194 Identities=15% Similarity=0.143 Sum_probs=125.5
Q ss_pred HHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHH---HhhccCcchhhhcCchHHHH--hhhcc
Q 000326 76 LAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALK---KISQEHPTACLRAGALMAVL--SYLDF 150 (1661)
Q Consensus 76 ~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~---nIS~~~~~~Il~~GgL~~LL--~lLd~ 150 (1661)
.|.+.|-.+....+.....+.+.+++..|+++| . ..+-.+++ +...+... ...-....+ ..+.+
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl-~-------~Ev~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~ 71 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRL-Q-------YEVDFALEENKNEEAGSGI---PPEYKESSVDGYSISY 71 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHH-H-------HHHHHHHhcccccCCCCCC---CCCcccccccccccCH
Confidence 467788888888877888889999999999443 2 22333343 22111110 000000000 11222
Q ss_pred CChHHHHHHHHHHHHhcc-CCC-Cchh-HHH--hCcHHHHHHhhccCC---HHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q 000326 151 FSTGVQRVALSTAANMCK-KLP-SDAA-DFV--MEAVPLLTNLLQYHD---AKVLEHASVCLTRIAEAFASSPDKLDELC 222 (1661)
Q Consensus 151 ~~~~vqr~Al~aLsNlc~-~~~-~~~~-~~v--~~~lp~L~~lL~~~D---~~v~e~A~~aLs~L~~~~~~~~e~~~~li 222 (1661)
....+.|..+.++..++. ... .... ..+ ...+..|..++.+.. +.|...|+..++.++.+ +|.....+.
T Consensus 72 ~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~n---ePT~~~~l~ 148 (379)
T PF06025_consen 72 QRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHN---EPTSFSILQ 148 (379)
T ss_pred HHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhc---CCchhHHHH
Confidence 334455555666666665 221 1111 122 235667777788775 78999999999999986 999999999
Q ss_pred hCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCC
Q 000326 223 NHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSG 289 (1661)
Q Consensus 223 ~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~ 289 (1661)
++|+++.+++-+.... ..-+.++...+-.+|+.||=.+..+ +.+.+.+.++.+..++.+..
T Consensus 149 e~Gl~~~~L~~i~~~~-----i~~s~e~l~~lP~~l~AicLN~~Gl-~~~~~~~~l~~~f~if~s~~ 209 (379)
T PF06025_consen 149 EAGLIDAFLDAITAKG-----ILPSSEVLTSLPNVLSAICLNNRGL-EKVKSSNPLDKLFEIFTSPD 209 (379)
T ss_pred HcCChHHHHHHHhccC-----CCCcHHHHHHHHHHHhHHhcCHHHH-HHHHhcChHHHHHHHhCCHH
Confidence 9999999999998221 1126677878888899999775554 66888999999999988643
No 158
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=86.96 E-value=15 Score=44.21 Aligned_cols=168 Identities=16% Similarity=0.159 Sum_probs=106.1
Q ss_pred CcHHHHH-HhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcch
Q 000326 56 SFAPVLV-GLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTA 134 (1661)
Q Consensus 56 g~vp~Lv-~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~ 134 (1661)
+++..|| --+++. ++.++..|.+||+-.+-.+.+.... .++.|. ..+......++..|+.+|..|..-++..
T Consensus 26 ~ll~~lI~P~v~~~-~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~-~~~~~~~~~v~~~al~~l~Dll~~~g~~ 98 (298)
T PF12719_consen 26 SLLDSLILPAVQSS-DPAVRELALKCLGLCCLLDKELAKE-----HLPLFL-QALQKDDEEVKITALKALFDLLLTHGID 98 (298)
T ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHH-HHHHhCCHHHHHHHHHHHHHHHHHcCch
Confidence 5566666 445555 4899999999999998766533332 466777 4557779999999999999998776643
Q ss_pred hh-----------hcCchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhcc----CCHHHHHH
Q 000326 135 CL-----------RAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQY----HDAKVLEH 199 (1661)
Q Consensus 135 Il-----------~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~----~D~~v~e~ 199 (1661)
++ ....+..+..+|+..+..+|..|+-.++-|.-.....+ ...++..|+-+..+ +++.+...
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 99 IFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred hccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 22 23456677778888888999999999998766432222 12234444333222 23444433
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccC
Q 000326 200 ASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTS 237 (1661)
Q Consensus 200 A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~ 237 (1661)
--.+|=..+. ....-+..+....++.+..+....
T Consensus 176 L~~Ffp~y~~----s~~~~Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 176 LSVFFPVYAS----SSPENQERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHc----CCHHHHHHHHHHHHHHHHHHHhCc
Confidence 3333333443 333335555556677777777654
No 159
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=86.83 E-value=24 Score=40.91 Aligned_cols=204 Identities=19% Similarity=0.168 Sum_probs=120.5
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhh
Q 000326 57 FAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACL 136 (1661)
Q Consensus 57 ~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il 136 (1661)
++|.|+.-+....+++++.....+|..++.....+... ++.+|. .|......++.--++..+..+-...+...
T Consensus 1 ll~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~-~L~~~~~~~~~~~~~rLl~~lw~~~~r~f- 73 (234)
T PF12530_consen 1 LLPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLV-SLVEQGSLELRYVALRLLTLLWKANDRHF- 73 (234)
T ss_pred ChHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHH-HHHcCCchhHHHHHHHHHHHHHHhCchHH-
Confidence 35667765666778999999999999998765222222 334555 56666666665556666666655444322
Q ss_pred hcCchHHHHhhhc----------cCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhh-ccCCHHHHHHHHHHHH
Q 000326 137 RAGALMAVLSYLD----------FFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLL-QYHDAKVLEHASVCLT 205 (1661)
Q Consensus 137 ~~GgL~~LL~lLd----------~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL-~~~D~~v~e~A~~aLs 205 (1661)
+.|..++..++ ......+-...+++..+|...|. .-.++++.|..+| ++.++.+...++-++.
T Consensus 74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~ 147 (234)
T PF12530_consen 74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALA 147 (234)
T ss_pred --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 55555555521 11234444557788899987665 5677899999999 7888889999999999
Q ss_pred HHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCC-HHHHHHHHHcCChHHHHHh
Q 000326 206 RIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGS-PLCAKTLLHLGISGILKDI 284 (1661)
Q Consensus 206 ~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s-~~~t~~Ll~~gil~~L~~L 284 (1661)
.+|.. . -++ +. ..-..+..-|... ..+.+....++.++.+..+. +......+...++..+-++
T Consensus 148 ~Lc~~---~--vvd-~~--s~w~vl~~~l~~~--------~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~ 211 (234)
T PF12530_consen 148 PLCEA---E--VVD-FY--SAWKVLQKKLSLD--------YRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEY 211 (234)
T ss_pred HHHHH---h--hcc-HH--HHHHHHHHhcCCc--------cchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhh
Confidence 99964 1 111 11 1122233333322 13445544445555544443 2222334555566666665
Q ss_pred hcCCC
Q 000326 285 LSGSG 289 (1661)
Q Consensus 285 L~~~~ 289 (1661)
.....
T Consensus 212 ~~~~~ 216 (234)
T PF12530_consen 212 TSSSD 216 (234)
T ss_pred ccccc
Confidence 55443
No 160
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=86.82 E-value=3 Score=39.15 Aligned_cols=67 Identities=21% Similarity=0.170 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 000326 197 LEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLG 276 (1661)
Q Consensus 197 ~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~t~~Ll~~g 276 (1661)
++.|+||+.+|+. .+.-++.+-+.++++.++++..+.+ ...++-.|+.+|+-|++.. +-...|-+.|
T Consensus 4 lKaaLWaighIgs----s~~G~~lL~~~~iv~~iv~~a~~s~--------v~siRGT~fy~Lglis~T~-~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGS----SPLGIQLLDESDIVEDIVKIAENSP--------VLSIRGTCFYVLGLISSTE-EGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhc----ChHHHHHHhhcCHHHHHHHHHHhCC--------ccchHHHHHHHHHHHhCCH-HHHHHHHHcC
Confidence 5789999999998 6777888888899999999998764 4568888999999888653 3334444443
No 161
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=86.74 E-value=13 Score=44.01 Aligned_cols=255 Identities=14% Similarity=0.114 Sum_probs=128.5
Q ss_pred HHHHHHHHhccCCCCchhHHHhC-cHHHHHHhhcc--CCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhC-CcHHHHHHh
Q 000326 158 VALSTAANMCKKLPSDAADFVME-AVPLLTNLLQY--HDAKVLEHASVCLTRIAEAFASSPDKLDELCNH-GLVTQAATL 233 (1661)
Q Consensus 158 ~Al~aLsNlc~~~~~~~~~~v~~-~lp~L~~lL~~--~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~-gll~~Lv~L 233 (1661)
-|+.|+.|+..........-.+. +--.++.++++ .+.+++-+.+.|+--++- +++..+.+-.. +++.-|+++
T Consensus 168 fav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf----~~~~aqdi~K~~dli~dli~i 243 (432)
T COG5231 168 FAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF----SKECAQDIDKMDDLINDLIAI 243 (432)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHHH
Confidence 35666666665444444333322 33344445443 367788888888877776 45444322221 567788888
Q ss_pred hccCCCCCCCCCCChhHHHHHHHHHHHHhcCC--HHHHHHHHHcCChHHHHHhhcCCCcccccccccccCCCHHHHHHHH
Q 000326 234 ISTSNSGGGQASLSTPTYTGLIRLLSTCASGS--PLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIV 311 (1661)
Q Consensus 234 L~~~~~~~~~~~~s~~i~~~alr~L~nLas~s--~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi 311 (1661)
+... ....+..-|+.++.|+|..+ ..+.+.++..++.++...|+.+ .|+- +.+..-|
T Consensus 244 Vk~~--------~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~er-----kysD--------Eel~~di 302 (432)
T COG5231 244 VKER--------AKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLER-----KYSD--------EELVIDI 302 (432)
T ss_pred HHHH--------HHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhc-----CCCh--------HHHHHHH
Confidence 8654 24567778888888998855 3444566667788887777653 1211 1111111
Q ss_pred HHhcccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCcchhhhHHHhhccCHHHHHHHHHHHHHHHHHHH
Q 000326 312 NLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIY 391 (1661)
Q Consensus 312 ~li~~LLP~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~f~~~l~p~Li~vy 391 (1661)
+.|...|-.-.......+.|...+..|-+.+.++ +...+- ...+ -..+.+++- .++..|++..
T Consensus 303 ~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~----H~~~dF---Ws~N--~d~l~kdny--------~i~k~L~~~l 365 (432)
T COG5231 303 ERIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPY----HHKKDF---WSTN--LDMLIKDNY--------EIVKVLKKYL 365 (432)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCc----ccccCc---hhhh--HHHHhhhhH--------HHHHHHHHHH
Confidence 1111111111110000001111111222222221 000000 0000 111222222 5667777777
Q ss_pred hccCChHHHHHHHHHHHHHhhcCCHHHHHHHhhhcchHHHHHHHhhcCCCchHHhHHHHHHHHHh
Q 000326 392 GSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILME 456 (1661)
Q Consensus 392 ~ss~~~~VR~~~L~~i~r~v~~~~~~~L~~~l~~~~~ss~la~il~~~d~~l~~~aL~i~~~Ll~ 456 (1661)
++.+.-..=.-++.-|.-.|- +.|| ..+++.....-.-|..++++.|+.+-..|||....+|.
T Consensus 366 q~n~~nt~i~vAc~Di~~~Vr-~~PE-~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 366 QSNNPNTWICVACSDIFQLVR-ASPE-INAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred hcCCCCceEeeeHhhHHHHHH-hCch-HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 776664111112222222222 2233 34455566677788889999999999999999988874
No 162
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=86.69 E-value=22 Score=46.00 Aligned_cols=103 Identities=18% Similarity=0.237 Sum_probs=57.3
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000326 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1661)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~ 91 (1661)
..+..|+...+. +.....-|.+-+.+-...=.+ +. +..+-.++.|..++ +..|+..|.+.|-.+|..++++
T Consensus 23 ~~y~~il~~~kg--~~k~K~Laaq~I~kffk~FP~--l~----~~Ai~a~~DLcEDe-d~~iR~~aik~lp~~ck~~~~~ 93 (556)
T PF05918_consen 23 EDYKEILDGVKG--SPKEKRLAAQFIPKFFKHFPD--LQ----EEAINAQLDLCEDE-DVQIRKQAIKGLPQLCKDNPEH 93 (556)
T ss_dssp HHHHHHHHGGGS---HHHHHHHHHHHHHHHCC-GG--GH----HHHHHHHHHHHT-S-SHHHHHHHHHHGGGG--T--T-
T ss_pred HHHHHHHHHccC--CHHHHHHHHHHHHHHHhhChh--hH----HHHHHHHHHHHhcc-cHHHHHHHHHhHHHHHHhHHHH
Confidence 456667777764 455666666777776664322 21 12256667777655 4778888888888888877777
Q ss_pred hhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhc
Q 000326 92 CAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQ 129 (1661)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~ 129 (1661)
+..|++ +|+ .||.+++..-...+-++|-.|-.
T Consensus 94 v~kvaD-----vL~-QlL~tdd~~E~~~v~~sL~~ll~ 125 (556)
T PF05918_consen 94 VSKVAD-----VLV-QLLQTDDPVELDAVKNSLMSLLK 125 (556)
T ss_dssp HHHHHH-----HHH-HHTT---HHHHHHHHHHHHHHHH
T ss_pred HhHHHH-----HHH-HHHhcccHHHHHHHHHHHHHHHh
Confidence 777654 677 67777765555555555544433
No 163
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=86.56 E-value=18 Score=44.19 Aligned_cols=218 Identities=12% Similarity=0.087 Sum_probs=144.5
Q ss_pred cccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch-----hhhccc--ccHHHHHHHHhcCCcHHHHHHHHHH
Q 000326 51 TFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC-----AAVVHY--GAVTCFVARLLTIEYMDLAEQSLQA 123 (1661)
Q Consensus 51 ~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~-----~~vV~~--GaVp~Lv~kLL~~~~~dl~Eqal~a 123 (1661)
.+...++++.|+..|..- +.|.+..++.+..|+........ ..+..+ .++..|+ + ..+.+|++-.|-..
T Consensus 71 Ei~~~dll~~Li~~L~~L-~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~-~--gy~~~dial~~g~m 146 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKL-DFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILL-R--GYENPDIALNCGDM 146 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS--HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHH-H--GGGSTTTHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhC-CCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHH-H--HhcCccccchHHHH
Confidence 455668899999988765 48899999999999997654442 234332 3334433 2 23456777666666
Q ss_pred HHHhhccCc--chhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHH----HhCcHHHHHHhhccCCHHHH
Q 000326 124 LKKISQEHP--TACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADF----VMEAVPLLTNLLQYHDAKVL 197 (1661)
Q Consensus 124 L~nIS~~~~--~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~----v~~~lp~L~~lL~~~D~~v~ 197 (1661)
|.-.++... ..|+....+..+..++...+-.+...|..++.-+........... -..++.....||.+++--+.
T Consensus 147 lRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk 226 (335)
T PF08569_consen 147 LRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK 226 (335)
T ss_dssp HHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred HHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence 666665543 368888888889999998888999999999888666432221111 13467788899999999999
Q ss_pred HHHHHHHHHHHhhcCCCHHHHH----HHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcC---CHHHHH
Q 000326 198 EHASVCLTRIAEAFASSPDKLD----ELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASG---SPLCAK 270 (1661)
Q Consensus 198 e~A~~aLs~L~~~~~~~~e~~~----~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~---s~~~t~ 270 (1661)
.+++..|+.|.- +..+.+ .+-+..-+..++.||... +.+++..|..++-..++. ++.+..
T Consensus 227 rqslkLL~elll----dr~n~~vm~~yi~~~~nLkl~M~lL~d~---------sk~Iq~eAFhvFKvFVANp~K~~~I~~ 293 (335)
T PF08569_consen 227 RQSLKLLGELLL----DRSNFNVMTRYISSPENLKLMMNLLRDK---------SKNIQFEAFHVFKVFVANPNKPPPIVD 293 (335)
T ss_dssp HHHHHHHHHHHH----SGGGHHHHHHHTT-HHHHHHHHHHTT-S----------HHHHHHHHHHHHHHHH-SS-BHHHHH
T ss_pred hhhHHHHHHHHH----chhHHHHHHHHHCCHHHHHHHHHHhcCc---------chhhhHHHHHHHHHHHhCCCCChHHHH
Confidence 999999999887 333333 333456888999999876 788999999999887765 344444
Q ss_pred HHHHcCChHHHHHhhcC
Q 000326 271 TLLHLGISGILKDILSG 287 (1661)
Q Consensus 271 ~Ll~~gil~~L~~LL~~ 287 (1661)
.|+++- +.|...|.+
T Consensus 294 iL~~Nr--~kLl~fl~~ 308 (335)
T PF08569_consen 294 ILIKNR--EKLLRFLKD 308 (335)
T ss_dssp HHHHTH--HHHHHHHHT
T ss_pred HHHHHH--HHHHHHHHh
Confidence 444422 244444443
No 164
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=86.14 E-value=7.9 Score=41.92 Aligned_cols=128 Identities=12% Similarity=0.156 Sum_probs=94.0
Q ss_pred hhhhcccccHHHHHHHHhcCCc------HHHHHHHHHHHHHhhccCcc--hhhhcCchHHHHhhhccC--ChHHHHHHHH
Q 000326 92 CAAVVHYGAVTCFVARLLTIEY------MDLAEQSLQALKKISQEHPT--ACLRAGALMAVLSYLDFF--STGVQRVALS 161 (1661)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~------~dl~Eqal~aL~nIS~~~~~--~Il~~GgL~~LL~lLd~~--~~~vqr~Al~ 161 (1661)
+..++..|++..|+ ++.+... .++...++.|+-.+-...-- .++...-+..+..|+... +..+++.|+.
T Consensus 4 A~EFI~~~Gl~~L~-~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLI-KMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHH-HHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 34567788999999 6766544 36777888888887664331 578888889999999853 6899999999
Q ss_pred HHHHhccCCCCchhHHHhC-cHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q 000326 162 TAANMCKKLPSDAADFVME-AVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELC 222 (1661)
Q Consensus 162 aLsNlc~~~~~~~~~~v~~-~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li 222 (1661)
++-+++-+.+.......++ -++.|...|+.+++++..+|...+-.|--+ .+++..+.+.
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~k--A~~~~r~~i~ 142 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLK--ADDSKRKEIA 142 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhc--CChHHHHHHH
Confidence 9999998654433222233 589999999999999999999888777765 2444444433
No 165
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.13 E-value=34 Score=47.12 Aligned_cols=246 Identities=13% Similarity=0.079 Sum_probs=141.9
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCC---CCHHHHHHHHHHHHHhhccCC-cch
Q 000326 17 ILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHE---SNPDIMLLAARALTHLCDVLP-SSC 92 (1661)
Q Consensus 17 Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~---~~~eiq~~A~raL~NLa~~~p-~~~ 92 (1661)
++....+..+..+|..+-.-|.+++.. +.. .......+..+-+.|.+. ...-.|..++-||.-|.+..+ +++
T Consensus 658 v~~~~e~~~~~~vQkK~yrlL~~l~~~---~s~-~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~ 733 (1176)
T KOG1248|consen 658 VDPEFENSSSTKVQKKAYRLLEELSSS---PSG-EGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHC 733 (1176)
T ss_pred hhHHhhccccHHHHHHHHHHHHHHhcC---Cch-hhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHH
Confidence 333333333789999998888777776 111 122223333344444321 235678889999999998887 555
Q ss_pred hhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcC------chHHHHhhhccC-ChHHHHHH---HHH
Q 000326 93 AAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAG------ALMAVLSYLDFF-STGVQRVA---LST 162 (1661)
Q Consensus 93 ~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~G------gL~~LL~lLd~~-~~~vqr~A---l~a 162 (1661)
+.+.. .||-++ -++...+...++.|..+|-.|+. ....++.| .|...+..|.-. --..++.. +-+
T Consensus 734 ~~i~k--~I~EvI-L~~Ke~n~~aR~~Af~lL~~i~~--i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Iva 808 (1176)
T KOG1248|consen 734 DLIPK--LIPEVI-LSLKEVNVKARRNAFALLVFIGA--IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVA 808 (1176)
T ss_pred HHHHH--HHHHHH-HhcccccHHHHhhHHHHHHHHHH--HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHH
Confidence 55443 555555 34455556666666666665553 11222222 445555555421 11122221 333
Q ss_pred HHHhcc-CCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCC
Q 000326 163 AANMCK-KLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGG 241 (1661)
Q Consensus 163 LsNlc~-~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~ 241 (1661)
+..+.. ....-+-.....++..++..|.++.++|++.|+..+..++..| ....+.... ..+++.+..++...
T Consensus 809 i~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~--pe~~l~~~~-~~LL~sll~ls~d~---- 881 (1176)
T KOG1248|consen 809 ITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKF--PEECLSPHL-EELLPSLLALSHDH---- 881 (1176)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcC--CHHHHhhhH-HHHHHHHHHHHHhh----
Confidence 333333 2234444567788889999999999999999999999999974 333333333 34788888877553
Q ss_pred CCCCCChhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHhhcC
Q 000326 242 GQASLSTPTYTGLIRLLSTCASG-SPLCAKTLLHLGISGILKDILSG 287 (1661)
Q Consensus 242 ~~~~~s~~i~~~alr~L~nLas~-s~~~t~~Ll~~gil~~L~~LL~~ 287 (1661)
...++..+-.+|--|++. ..+..+.++. +..+++|+.
T Consensus 882 -----k~~~r~Kvr~LlekLirkfg~~eLe~~~p----ee~~klL~n 919 (1176)
T KOG1248|consen 882 -----KIKVRKKVRLLLEKLIRKFGAEELESFLP----EEDMKLLTN 919 (1176)
T ss_pred -----hHHHHHHHHHHHHHHHHHhCHHHHHhhCH----HHHHHHHHH
Confidence 456777777777777653 2333333333 555555553
No 166
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=86.10 E-value=19 Score=44.74 Aligned_cols=123 Identities=15% Similarity=0.227 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHh------cCCCcccccccc-cCcHHHHHHhhcCCC--CHHHHHHHHHHHHHhhccCCcchhhhcc
Q 000326 27 EGKQVEALTQLCEMLS------IGTEESLSTFSV-DSFAPVLVGLLNHES--NPDIMLLAARALTHLCDVLPSSCAAVVH 97 (1661)
Q Consensus 27 ~~~ql~Al~~L~~lL~------~~~~~~l~~~~~-~g~vp~Lv~lL~~~~--~~eiq~~A~raL~NLa~~~p~~~~~vV~ 97 (1661)
++.|...++.|-+.+. ....+.++.+.. ..+...|..+|++.. -+.+-..|+-+++.+.-..|-+-..+.+
T Consensus 70 ~~~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e 149 (379)
T PF06025_consen 70 SYQRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQE 149 (379)
T ss_pred CHHHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHH
Confidence 3445555555444433 223355577777 678889999998654 3677889999999999999988889999
Q ss_pred cccHHHHHHHHh---cCCcHHHHHHHHHHHHHhhccCcc--hhhhcCchHHHHhhhc
Q 000326 98 YGAVTCFVARLL---TIEYMDLAEQSLQALKKISQEHPT--ACLRAGALMAVLSYLD 149 (1661)
Q Consensus 98 ~GaVp~Lv~kLL---~~~~~dl~Eqal~aL~nIS~~~~~--~Il~~GgL~~LL~lLd 149 (1661)
+|.++.+++.+. --+..|+.-..-.+|+-||-+... .+.+.+.+..++.++.
T Consensus 150 ~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~ 206 (379)
T PF06025_consen 150 AGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFT 206 (379)
T ss_pred cCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhC
Confidence 999999997666 124577777777888888876653 6777888888877663
No 167
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.59 E-value=8.5 Score=49.34 Aligned_cols=214 Identities=19% Similarity=0.165 Sum_probs=132.3
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHH---HHHHHHhhcc--CCcchhhh
Q 000326 21 LRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLA---ARALTHLCDV--LPSSCAAV 95 (1661)
Q Consensus 21 L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A---~raL~NLa~~--~p~~~~~v 95 (1661)
+-.+.|+.++..|+..|=.+ ... - -.........+++|+++ +.++...| .|..+|++-+ ..+....=
T Consensus 206 ~~~~~D~~Vrt~A~eglL~L-~eg--~----kL~~~~Y~~A~~~lsD~-~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~k 277 (823)
T KOG2259|consen 206 LEHDQDFRVRTHAVEGLLAL-SEG--F----KLSKACYSRAVKHLSDD-YEDVRKAAVQLVSVWGNRCPAPLERESEEEK 277 (823)
T ss_pred HhcCCCcchHHHHHHHHHhh-ccc--c----cccHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHhcCCCcccchhhhhh
Confidence 33444888888887776221 111 0 11233577889999866 47787766 5566666621 11111111
Q ss_pred cccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhcc---------------------------------C-----------
Q 000326 96 VHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQE---------------------------------H----------- 131 (1661)
Q Consensus 96 V~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~---------------------------------~----------- 131 (1661)
....|.-.+| ..+.--...++.+|..+||-+-.- .
T Consensus 278 l~D~aF~~vC-~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~ad 356 (823)
T KOG2259|consen 278 LKDAAFSSVC-RAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNAD 356 (823)
T ss_pred hHHHHHHHHH-HHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcccccc
Confidence 1124666777 555555566666666666544210 0
Q ss_pred -c--------chhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHH
Q 000326 132 -P--------TACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASV 202 (1661)
Q Consensus 132 -~--------~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~ 202 (1661)
| ..|+..|+.-+++.=|...-..+.+.|+..++.|+.+.|. | ...++..|+..++.+...|..+|..
T Consensus 357 vpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~--F--A~~aldfLvDMfNDE~~~VRL~ai~ 432 (823)
T KOG2259|consen 357 VPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG--F--AVRALDFLVDMFNDEIEVVRLKAIF 432 (823)
T ss_pred CchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC--c--HHHHHHHHHHHhccHHHHHHHHHHH
Confidence 0 1477888888888877766678888999998888875542 2 3568999999999999999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCH
Q 000326 203 CLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSP 266 (1661)
Q Consensus 203 aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~ 266 (1661)
+|..|+....-..+ .++.+..-|... +.++...+-.+|.+ |..++
T Consensus 433 aL~~Is~~l~i~ee---------ql~~il~~L~D~---------s~dvRe~l~elL~~-~~~~d 477 (823)
T KOG2259|consen 433 ALTMISVHLAIREE---------QLRQILESLEDR---------SVDVREALRELLKN-ARVSD 477 (823)
T ss_pred HHHHHHHHheecHH---------HHHHHHHHHHhc---------CHHHHHHHHHHHHh-cCCCc
Confidence 99999985333344 445555556544 45555544444444 44443
No 168
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.58 E-value=8.6 Score=47.96 Aligned_cols=192 Identities=14% Similarity=0.049 Sum_probs=111.5
Q ss_pred cchHHHHHHHhhcC--CCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcC---CCCHHHHHHHHHHHHHhh
Q 000326 11 SGRLKKILSGLRAD--GEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNH---ESNPDIMLLAARALTHLC 85 (1661)
Q Consensus 11 ~~~l~~Ll~~L~s~--~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~---~~~~eiq~~A~raL~NLa 85 (1661)
..+++.++..+-+. +.+..++..-...+--+...+ .+...|++..++..|.. +.+..+...|||+|.|++
T Consensus 212 ~~~~~~il~q~~ss~ts~~~~~ritd~Af~ael~~~~-----~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~a 286 (533)
T KOG2032|consen 212 DLEMGKILAQLLSSITSEKENGRITDIAFFAELKRPK-----ELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTA 286 (533)
T ss_pred CccHHHHHhhcccccchhcccchHHHHHHHHHHhCcc-----cccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHh
Confidence 44566666665432 122334444444433333322 24456677777666642 224577789999999999
Q ss_pred ccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhh---ccCChHHHHHHHHH
Q 000326 86 DVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYL---DFFSTGVQRVALST 162 (1661)
Q Consensus 86 ~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lL---d~~~~~vqr~Al~a 162 (1661)
++.|.-+..... -.+..++-.|..-.+.+|+-+++.+|..+..--.+.=++.+-++..+++. +..+..+.-.|...
T Consensus 287 s~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~L 365 (533)
T KOG2032|consen 287 SGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVL 365 (533)
T ss_pred ccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHH
Confidence 997755543221 23445555666777899999999999999865554444555555555544 44456666665555
Q ss_pred HHHhcc--CCCCchhH--HHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHh
Q 000326 163 AANMCK--KLPSDAAD--FVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAE 209 (1661)
Q Consensus 163 LsNlc~--~~~~~~~~--~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~ 209 (1661)
..-+.. +.+.+.+. .+.+-+-.|+-.|++..+.|. .||....+.|.
T Consensus 366 fg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va-~ACr~~~~~c~ 415 (533)
T KOG2032|consen 366 FGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVA-RACRSELRTCY 415 (533)
T ss_pred HHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHH-HHHHHHHHhcC
Confidence 444443 33333332 244333344444666666665 58888877776
No 169
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=85.47 E-value=8 Score=51.34 Aligned_cols=209 Identities=16% Similarity=0.123 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhh------------h
Q 000326 28 GKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAA------------V 95 (1661)
Q Consensus 28 ~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~------------v 95 (1661)
.+.+..+.-+.+-|.|-+.+. ...+...|+.+|++ |++.-.|+.++.-++..++..... =
T Consensus 792 ~~al~~l~Wv~KaLl~R~~~~-----s~~ia~klld~Ls~---~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQR 863 (1030)
T KOG1967|consen 792 EIALTVLAWVTKALLLRNHPE-----SSEIAEKLLDLLSG---PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQR 863 (1030)
T ss_pred hHHHHHHHHHHHHHHHcCCcc-----cchHHHHHHHhcCC---ccccchHHHhhHhhhccChHHhhhccccchhHHHHHH
Confidence 334444444555566544321 22356778888874 567778888888877665432221 0
Q ss_pred cccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhh---cCchHHHHhhhccCChHHHHHHHHHHHHhccCCCC
Q 000326 96 VHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLR---AGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPS 172 (1661)
Q Consensus 96 V~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~---~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~ 172 (1661)
.-..+||.|+ ..........+-.=+.+|.+.-.+-|..++- .-.++.+|+-|+-.+..++-.++.++.-+....+.
T Consensus 864 fF~~ivP~l~-~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t 942 (1030)
T KOG1967|consen 864 FFCDIVPILV-SKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET 942 (1030)
T ss_pred HHHhhHHHHH-HHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc
Confidence 1246899999 5555777788888889999998887765442 34678888999999999999999999988887766
Q ss_pred chhHHHhCcHHHHHHhhccCC---HHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChh
Q 000326 173 DAADFVMEAVPLLTNLLQYHD---AKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTP 249 (1661)
Q Consensus 173 ~~~~~v~~~lp~L~~lL~~~D---~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~ 249 (1661)
-.-.++.-++|.|..+=...| .-|.+.|+.|+..|+.. -|...-.-....++..|+..|..+ ..-
T Consensus 943 L~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~---~P~~~l~~fr~~Vl~al~k~LdDk---------KRl 1010 (1030)
T KOG1967|consen 943 LQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRR---LPTKSLLSFRPLVLRALIKILDDK---------KRL 1010 (1030)
T ss_pred cchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhcc---CCCcccccccHHHHHHhhhccCcH---------HHH
Confidence 666778889999999965555 67889999999999985 333333334445778888888664 234
Q ss_pred HHHHHHHH
Q 000326 250 TYTGLIRL 257 (1661)
Q Consensus 250 i~~~alr~ 257 (1661)
+.++|+++
T Consensus 1011 VR~eAv~t 1018 (1030)
T KOG1967|consen 1011 VRKEAVDT 1018 (1030)
T ss_pred HHHHHHHH
Confidence 66666654
No 170
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.45 E-value=27 Score=45.39 Aligned_cols=238 Identities=17% Similarity=0.112 Sum_probs=131.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCH-HHHHHHHHHHHHhhccCCcchhh
Q 000326 16 KILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNP-DIMLLAARALTHLCDVLPSSCAA 94 (1661)
Q Consensus 16 ~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~-eiq~~A~raL~NLa~~~p~~~~~ 94 (1661)
.+.+.|.+. |+..+.-||..+.++=..+.- +.+-+-+-++|-+.++. -+...||-||..|...+|+...
T Consensus 115 ~iknDL~sr-n~~fv~LAL~~I~niG~re~~--------ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~- 184 (938)
T KOG1077|consen 115 SIKNDLSSR-NPTFVCLALHCIANIGSREMA--------EAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVN- 184 (938)
T ss_pred HHHhhhhcC-CcHHHHHHHHHHHhhccHhHH--------HHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccC-
Confidence 334446665 888888898888765443221 12233333666655544 4566899999999988775432
Q ss_pred hcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhh---------------cc--CChHHHH
Q 000326 95 VVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYL---------------DF--FSTGVQR 157 (1661)
Q Consensus 95 vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lL---------------d~--~~~~vqr 157 (1661)
-.+-...++ .||.-++..+.-.+...++-|+...++.- .++++..+.-| -. ..+=+|.
T Consensus 185 --~~~W~~riv-~LL~D~~~gv~ta~~sLi~~lvk~~p~~y--k~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~v 259 (938)
T KOG1077|consen 185 --PGEWAQRIV-HLLDDQHMGVVTAATSLIEALVKKNPESY--KTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQV 259 (938)
T ss_pred --hhhHHHHHH-HHhCccccceeeehHHHHHHHHHcCCHHH--hhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHH
Confidence 235667788 78888888888888888888887766421 12222222211 11 2455666
Q ss_pred HHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCC-----HHHH----HHHH-HHHHHHHhhcCCCHHHHHHHHhCCcH
Q 000326 158 VALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHD-----AKVL----EHAS-VCLTRIAEAFASSPDKLDELCNHGLV 227 (1661)
Q Consensus 158 ~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D-----~~v~----e~A~-~aLs~L~~~~~~~~e~~~~li~~gll 227 (1661)
++++++.++= ++.+.......+..|-.+|+..+ ++|. .+|. .-..+++..+..+++.+.. .+
T Consensus 260 Kl~rlLq~~p---~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~-----~~ 331 (938)
T KOG1077|consen 260 KLLRLLQIYP---TPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR-----AV 331 (938)
T ss_pred HHHHHHHhCC---CCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH-----HH
Confidence 7777777662 22222223333444444443322 2222 2222 2222333322223333322 36
Q ss_pred HHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCC
Q 000326 228 TQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGS 288 (1661)
Q Consensus 228 ~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~ 288 (1661)
.+|.++|.+.+ .++.--++..++.||+... ++..++.. .+.+...|+..
T Consensus 332 ~~Lg~fls~rE---------~NiRYLaLEsm~~L~ss~~--s~davK~h-~d~Ii~sLkte 380 (938)
T KOG1077|consen 332 NQLGQFLSHRE---------TNIRYLALESMCKLASSEF--SIDAVKKH-QDTIINSLKTE 380 (938)
T ss_pred HHHHHHhhccc---------ccchhhhHHHHHHHHhccc--hHHHHHHH-HHHHHHHhccc
Confidence 67888887763 4577777888888877632 33344433 56666666643
No 171
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=85.33 E-value=2.9 Score=41.11 Aligned_cols=84 Identities=17% Similarity=0.252 Sum_probs=66.1
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000326 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1661)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~ 91 (1661)
..+++.+..|++. .+-++-.|+..|++++...+ .......+++..+...|++++ +=+=+.|..+|..|+...|+.
T Consensus 3 ~~~~~al~~L~dp-~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d~D-syVYL~aI~~L~~La~~~p~~ 77 (92)
T PF10363_consen 3 ETLQEALSDLNDP-LPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKDED-SYVYLNAIKGLAALADRHPDE 77 (92)
T ss_pred HHHHHHHHHccCC-CcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHHHChHH
Confidence 4678899999886 88999999999999999875 122345567788888888775 788889999999999877642
Q ss_pred hhhhcccccHHHHHHHH
Q 000326 92 CAAVVHYGAVTCFVARL 108 (1661)
Q Consensus 92 ~~~vV~~GaVp~Lv~kL 108 (1661)
++|.|++..
T Consensus 78 --------vl~~L~~~y 86 (92)
T PF10363_consen 78 --------VLPILLDEY 86 (92)
T ss_pred --------HHHHHHHHH
Confidence 677777443
No 172
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.31 E-value=35 Score=42.21 Aligned_cols=276 Identities=15% Similarity=0.187 Sum_probs=164.1
Q ss_pred CCHHHHHHHHHHHHHHHh----cCCCccc-ccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccC--C-------c
Q 000326 25 GEEGKQVEALTQLCEMLS----IGTEESL-STFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVL--P-------S 90 (1661)
Q Consensus 25 ~D~~~ql~Al~~L~~lL~----~~~~~~l-~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~--p-------~ 90 (1661)
++|..=+++=.+|-.++. ..+-|-+ ..+..-..|+.|+.+|.++ |.+|-....-.|.-+.+.. + .
T Consensus 89 dnPeKFmeSE~dLhd~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHe-NtDI~iavvdLLqELTD~Dv~~es~egAev 167 (536)
T KOG2734|consen 89 DNPEKFMESEVDLHDIIQEMHVLATMPDLYPILVELNAVQSLLELLGHE-NTDIAIAVVDLLQELTDEDVLYESEEGAEV 167 (536)
T ss_pred CCHHHHHHhhccHHHHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCC-CchhHHHHHHHHHHhhhhcccccccccHHH
Confidence 366666655443333322 1222333 3577788999999999987 6888887777777776432 1 2
Q ss_pred chhhhcccccHHHHHHHHhcCC-----cHHHHHHHHHHHHHhhccCcc---hhhhcCchHHHHhhhc---cCChHHHHHH
Q 000326 91 SCAAVVHYGAVTCFVARLLTIE-----YMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYLD---FFSTGVQRVA 159 (1661)
Q Consensus 91 ~~~~vV~~GaVp~Lv~kLL~~~-----~~dl~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lLd---~~~~~vqr~A 159 (1661)
-+.++|+.++|+.|++.+-.-+ ..+=...++..++|+..-.+. .+++.|-+.-||.-+. .|+.. ...|
T Consensus 168 LidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aN-k~Ya 246 (536)
T KOG2734|consen 168 LIDALVDGQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDAN-KQYA 246 (536)
T ss_pred HHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchh-HHHH
Confidence 3456888899999985442221 133456778888888765554 5777777777777443 23333 3345
Q ss_pred HHHHHHhccCCC-CchhHHHhCcHHHHHHhh----ccC-----CHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHH
Q 000326 160 LSTAANMCKKLP-SDAADFVMEAVPLLTNLL----QYH-----DAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQ 229 (1661)
Q Consensus 160 l~aLsNlc~~~~-~~~~~~v~~~lp~L~~lL----~~~-----D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~ 229 (1661)
.-+++=+..+.. ......--+.+..|..-| .+. ..+..++...||+.+.. .+++.+.++..+.++-
T Consensus 247 sEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm----~~~nr~~Fl~~EGlqL 322 (536)
T KOG2734|consen 247 SEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLM----APANRERFLKGEGLQL 322 (536)
T ss_pred HHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhc----ChhhhhhhhccccHHH
Confidence 555554444322 111111122333333322 222 36788999999988887 7888999998877766
Q ss_pred HHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCH--HHHHHHHHcCChHHHHHhhcCCC-cccccccccccCCCHHH
Q 000326 230 AATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSP--LCAKTLLHLGISGILKDILSGSG-VSANSAVPPALSRPAEQ 306 (1661)
Q Consensus 230 Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~--~~t~~Ll~~gil~~L~~LL~~~~-~~~~~~~s~i~~~~~~q 306 (1661)
+.-+|... .-....++++|-.+..|.+ .....+++...+.++..++...+ +.+.... ...++
T Consensus 323 m~Lmlr~K----------k~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~-----t~~e~ 387 (536)
T KOG2734|consen 323 MNLMLREK----------KVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKI-----SADEH 387 (536)
T ss_pred HHHHHHHH----------HHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccC-----cHHHH
Confidence 55555553 2245568889988888876 66677888776777766665222 2111111 12344
Q ss_pred HHHHHHHhcccCCCC
Q 000326 307 IFEIVNLANELLPPL 321 (1661)
Q Consensus 307 i~~vi~li~~LLP~L 321 (1661)
...++..|+.|+-.+
T Consensus 388 eEhv~siiaSl~~~~ 402 (536)
T KOG2734|consen 388 EEHVCSILASLLRNL 402 (536)
T ss_pred HHHHHHHHHHHHHhc
Confidence 455555556666544
No 173
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.31 E-value=1.6e+02 Score=40.20 Aligned_cols=220 Identities=13% Similarity=0.066 Sum_probs=120.8
Q ss_pred CHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHH
Q 000326 26 EEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFV 105 (1661)
Q Consensus 26 D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv 105 (1661)
--.++-.|++.+...-++.=.+ .-....++....++|..+....++.+|+-||.-+.+........+-. .||.++
T Consensus 475 ~g~Lrarac~vl~~~~~~df~d---~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~--hvp~~m 549 (1010)
T KOG1991|consen 475 YGYLRARACWVLSQFSSIDFKD---PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSA--HVPPIM 549 (1010)
T ss_pred hhHHHHHHHHHHHHHHhccCCC---hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhh--hhhHHH
Confidence 4477778888887665543111 12233456667788885556889999999999999877644343432 577777
Q ss_pred HHHhcCCcHHHHHHHHHHHHHhhccCcch------hhhcCchHHHHhhhcc---CChH---HHHHHHH---HHHHhccCC
Q 000326 106 ARLLTIEYMDLAEQSLQALKKISQEHPTA------CLRAGALMAVLSYLDF---FSTG---VQRVALS---TAANMCKKL 170 (1661)
Q Consensus 106 ~kLL~~~~~dl~Eqal~aL~nIS~~~~~~------Il~~GgL~~LL~lLd~---~~~~---vqr~Al~---aLsNlc~~~ 170 (1661)
++||.....-=.+--..+++.|-...+.. =+-.......++++.. .+.. -+-.|+- ++..+....
T Consensus 550 q~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~ 629 (1010)
T KOG1991|consen 550 QELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSL 629 (1010)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHH
Confidence 78877654322222334555554443321 1111222333444432 1111 1222222 222222222
Q ss_pred CC-c-hhHHH-hCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCC
Q 000326 171 PS-D-AADFV-MEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLS 247 (1661)
Q Consensus 171 ~~-~-~~~~v-~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s 247 (1661)
+. + -...+ .-++|.+..+|++.-.++.+.+|-.+.+++-- .++.--. --|+++.+.+.+... .
T Consensus 630 e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~---~~~Isp~--mW~ll~li~e~~~~~---------~ 695 (1010)
T KOG1991|consen 630 ENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFL---SKEISPI--MWGLLELILEVFQDD---------G 695 (1010)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhh---hcccCHH--HHHHHHHHHHHHhhh---------h
Confidence 11 1 11222 34677888888888888888888888877763 2111111 125677777777654 3
Q ss_pred hhHHHHHHHHHHHHhcC
Q 000326 248 TPTYTGLIRLLSTCASG 264 (1661)
Q Consensus 248 ~~i~~~alr~L~nLas~ 264 (1661)
..-+....-+|-|+++.
T Consensus 696 ~dyf~d~~~~l~N~vt~ 712 (1010)
T KOG1991|consen 696 IDYFTDMMPALHNYVTY 712 (1010)
T ss_pred HHHHHHHHHHHhhheee
Confidence 45666777777776653
No 174
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=85.03 E-value=1.4 Score=33.96 Aligned_cols=29 Identities=38% Similarity=0.560 Sum_probs=26.4
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHHHHh
Q 000326 181 AVPLLTNLLQYHDAKVLEHASVCLTRIAE 209 (1661)
Q Consensus 181 ~lp~L~~lL~~~D~~v~e~A~~aLs~L~~ 209 (1661)
++|.|.++++.++++|...|++||..|++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 48999999999999999999999999987
No 175
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=84.31 E-value=2.2 Score=42.35 Aligned_cols=90 Identities=20% Similarity=0.140 Sum_probs=68.1
Q ss_pred HHHHHHHHHhhccCcchh--hhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHH
Q 000326 118 EQSLQALKKISQEHPTAC--LRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAK 195 (1661)
Q Consensus 118 Eqal~aL~nIS~~~~~~I--l~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~ 195 (1661)
..++++|..++..-+..+ .-.-.+++++..++..+..+...|+-++.|+++.....-.....++++.|.+++...|+.
T Consensus 4 ~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~ 83 (97)
T PF12755_consen 4 KGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDEN 83 (97)
T ss_pred hHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh
Confidence 456777777766544422 123478899999999999999999999999998665555667789999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 000326 196 VLEHASVCLTRIA 208 (1661)
Q Consensus 196 v~e~A~~aLs~L~ 208 (1661)
|...| ..|-++.
T Consensus 84 Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 84 VRSAA-ELLDRLL 95 (97)
T ss_pred HHHHH-HHHHHHh
Confidence 77655 5554443
No 176
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.27 E-value=17 Score=46.99 Aligned_cols=121 Identities=17% Similarity=0.199 Sum_probs=88.0
Q ss_pred HhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc-hhhhcCchHHHHhhhc-cCChHHHHHHH
Q 000326 83 HLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT-ACLRAGALMAVLSYLD-FFSTGVQRVAL 160 (1661)
Q Consensus 83 NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~-~Il~~GgL~~LL~lLd-~~~~~vqr~Al 160 (1661)
+++-........++. ++..|+ .++......++--|+..+..++.-... ..++.- ...++..|. ..+.++.|.|+
T Consensus 315 ~l~~h~D~e~~ll~~--~~~~Lg-~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h-~d~Ii~sLkterDvSirrrav 390 (938)
T KOG1077|consen 315 SLAIHLDSEPELLSR--AVNQLG-QFLSHRETNIRYLALESMCKLASSEFSIDAVKKH-QDTIINSLKTERDVSIRRRAV 390 (938)
T ss_pred HHHHHcCCcHHHHHH--HHHHHH-HHhhcccccchhhhHHHHHHHHhccchHHHHHHH-HHHHHHHhccccchHHHHHHH
Confidence 333333334444443 677778 788888888888888888888654332 333333 788888888 77999999999
Q ss_pred HHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCC
Q 000326 161 STAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFAS 213 (1661)
Q Consensus 161 ~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~ 213 (1661)
-.+.-+|.. ...+.++.-|.+.|.+-|..+.++...=++-|++.|..
T Consensus 391 DLLY~mcD~------~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAt 437 (938)
T KOG1077|consen 391 DLLYAMCDV------SNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYAT 437 (938)
T ss_pred HHHHHHhch------hhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcC
Confidence 999999963 23455677777888889999999999888888887643
No 177
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=84.15 E-value=6.6 Score=50.23 Aligned_cols=185 Identities=15% Similarity=0.133 Sum_probs=125.3
Q ss_pred cCcHHHHHHhhcCC---CCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccC
Q 000326 55 DSFAPVLVGLLNHE---SNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEH 131 (1661)
Q Consensus 55 ~g~vp~Lv~lL~~~---~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~ 131 (1661)
..|-|.+.++-.+. .++++|..|.-+|..+++-+.+.+.. -.|.|+..|-.++.+.++.+|+-+|+.+..-.
T Consensus 891 s~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~e-----hlpllIt~mek~p~P~IR~NaVvglgD~~vcf 965 (1128)
T COG5098 891 SNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSE-----HLPLLITSMEKHPIPRIRANAVVGLGDFLVCF 965 (1128)
T ss_pred hhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhCCCcceeccceeeccccceeh
Confidence 44667777766542 36999999999999999877655543 57899944444899999999999988876533
Q ss_pred cchhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhc
Q 000326 132 PTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAF 211 (1661)
Q Consensus 132 ~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~ 211 (1661)
...+=+. -.-|..-|...+..++|+|+-++.++.-. ....+++-++.++.+|..+|.+|.+-|-..+..++..
T Consensus 966 N~~~de~--t~yLyrrL~De~~~V~rtclmti~fLila----gq~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~K- 1038 (1128)
T COG5098 966 NTTADEH--THYLYRRLGDEDADVRRTCLMTIHFLILA----GQLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKK- 1038 (1128)
T ss_pred hhhhHHH--HHHHHHHhcchhhHHHHHHHHHHHHHHHc----cceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhc-
Confidence 3222111 12233344556789999999999998752 2245788899999999999999999999999888874
Q ss_pred CCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCC
Q 000326 212 ASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGS 265 (1661)
Q Consensus 212 ~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s 265 (1661)
++....-++ . +..-|+..... ...-+..+++.|..+....
T Consensus 1039 --dNt~yn~fi-----d-ifs~ls~~ae~------g~e~fk~II~FLt~fI~ke 1078 (1128)
T COG5098 1039 --DNTMYNGFI-----D-IFSTLSSDAEN------GQEPFKLIIGFLTDFISKE 1078 (1128)
T ss_pred --ccchhhhhH-----H-HHHHcCchhhc------CCCcHHHHHHHHHHHHHHH
Confidence 444333333 1 23333322111 1122667788887777653
No 178
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=83.72 E-value=24 Score=47.90 Aligned_cols=139 Identities=17% Similarity=0.126 Sum_probs=75.9
Q ss_pred CHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc-h----hhhcCchHHH
Q 000326 70 NPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT-A----CLRAGALMAV 144 (1661)
Q Consensus 70 ~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~-~----Il~~GgL~~L 144 (1661)
+..++..|+|||.+|..-.|+... .+..|+|+ .-..+.+...+.-+.-+.+.+...... . -+.+..+..+
T Consensus 557 d~~irelaa~aL~~Ls~~~pk~~a----~~~L~~ll-d~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l 631 (1133)
T KOG1943|consen 557 DVKIRELAAYALHKLSLTEPKYLA----DYVLPPLL-DSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGL 631 (1133)
T ss_pred cHHHHHHHHHHHHHHHHhhHHhhc----ccchhhhh-hhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhh
Confidence 578999999999999887775543 35678888 455566778888777777777654322 1 1122222222
Q ss_pred Hh--------hhccCChHHHHHHH-HHHHHhccCCCCchhHHHhC-cHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCC
Q 000326 145 LS--------YLDFFSTGVQRVAL-STAANMCKKLPSDAADFVME-AVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASS 214 (1661)
Q Consensus 145 L~--------lLd~~~~~vqr~Al-~aLsNlc~~~~~~~~~~v~~-~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~ 214 (1661)
.+ .++.....+.+.++ ..+-++..+...-..+.+.+ ---.|...+.+.+ .+.+.|.|+++.++..|...
T Consensus 632 ~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~ 710 (1133)
T KOG1943|consen 632 LSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKA 710 (1133)
T ss_pred hhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhc
Confidence 22 22221113444443 33333333333222222222 3333444443333 67788889998888765333
No 179
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.67 E-value=82 Score=41.59 Aligned_cols=95 Identities=13% Similarity=0.207 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhc
Q 000326 156 QRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLIS 235 (1661)
Q Consensus 156 qr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~ 235 (1661)
.+-.+.++..|+.+-| +....++|.|...|...++....+.+..+....+. -|..... ++.+|++-+.
T Consensus 376 RqlLiktih~cav~Fp----~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek---~p~Lr~~-----ii~~l~~~~~ 443 (948)
T KOG1058|consen 376 RQLLIKTIHACAVKFP----EVAATVVSLLLDFISDSNEAAASDVLMFVREAIEK---FPNLRAS-----IIEKLLETFP 443 (948)
T ss_pred HHHHHHHHHHHhhcCh----HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh---CchHHHH-----HHHHHHHhhh
Confidence 4445667776665543 33567899999999999888888887777777774 3333333 2455555553
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHH
Q 000326 236 TSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAK 270 (1661)
Q Consensus 236 ~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~t~ 270 (1661)
.- -+..++..++|++|..|.+..++..
T Consensus 444 ~i--------rS~ki~rgalwi~GeYce~~~~i~~ 470 (948)
T KOG1058|consen 444 QI--------RSSKICRGALWILGEYCEGLSEIQS 470 (948)
T ss_pred hh--------cccccchhHHHHHHHHHhhhHHHHH
Confidence 22 2556899999999999998775543
No 180
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=83.67 E-value=54 Score=38.00 Aligned_cols=202 Identities=17% Similarity=0.168 Sum_probs=122.6
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchh
Q 000326 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCA 93 (1661)
Q Consensus 14 l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~ 93 (1661)
++.|+..+....++..+...+..|-.+....+ ... .-++..|..+...+ ..+.+..+.|.++.+....+..-
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~-~~~-----~~v~~~L~~L~~~~-~~~~~~~~~rLl~~lw~~~~r~f- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKN-VCV-----PPVLQTLVSLVEQG-SLELRYVALRLLTLLWKANDRHF- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCc-cch-----hHHHHHHHHHHcCC-chhHHHHHHHHHHHHHHhCchHH-
Confidence 45677777666699999999999988777653 221 22355666666544 36667788999999988776443
Q ss_pred hhcccccHHHHHHHH--hc--------CCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhh-ccCChHHHHHHHHH
Q 000326 94 AVVHYGAVTCFVARL--LT--------IEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYL-DFFSTGVQRVALST 162 (1661)
Q Consensus 94 ~vV~~GaVp~Lv~kL--L~--------~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lL-d~~~~~vqr~Al~a 162 (1661)
+.+..++ .. +. ....+..--..+++.-||...++ --...+..+-.+| +..+..++..++-+
T Consensus 74 -----~~L~~~L-~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~ 145 (234)
T PF12530_consen 74 -----PFLQPLL-LLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEA 145 (234)
T ss_pred -----HHHHHHH-HHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 3333333 22 11 11233444445688888887776 1122456666677 67788899999999
Q ss_pred HHHhccCCCCchhHHHhCcHHHHHHhhccC-CHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccC
Q 000326 163 AANMCKKLPSDAADFVMEAVPLLTNLLQYH-DAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTS 237 (1661)
Q Consensus 163 LsNlc~~~~~~~~~~v~~~lp~L~~lL~~~-D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~ 237 (1661)
+.-+|.. +..-+....-.|..-|..+ .+.|++..|.-+..+..+ .-+.+..+. +...++..+.++..+.
T Consensus 146 l~~Lc~~----~vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~-~~~~e~~~~-~~~~~l~~lW~~~~~~ 215 (234)
T PF12530_consen 146 LAPLCEA----EVVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQG-AVDSEEYEE-LKRQILQLLWEYTSSS 215 (234)
T ss_pred HHHHHHH----hhccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccc-cCChhhhhH-HHHHHHHHHHhhcccc
Confidence 9999932 2122233344444445443 577777666555555444 223333443 3445777777777665
No 181
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=83.41 E-value=1.6 Score=33.71 Aligned_cols=30 Identities=13% Similarity=0.246 Sum_probs=25.5
Q ss_pred cHHHHHHHHhcCCcHHHHHHHHHHHHHhhcc
Q 000326 100 AVTCFVARLLTIEYMDLAEQSLQALKKISQE 130 (1661)
Q Consensus 100 aVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~ 130 (1661)
++|.|+ +++..++.+++..|+++|+.|+..
T Consensus 1 llp~l~-~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILL-QLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHH-HHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHH-HHcCCCCHHHHHHHHHHHHHHHhh
Confidence 378888 899999999999999999999753
No 182
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=83.33 E-value=1.8e+02 Score=41.54 Aligned_cols=144 Identities=9% Similarity=0.150 Sum_probs=94.5
Q ss_pred cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchh-hhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc
Q 000326 55 DSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCA-AVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT 133 (1661)
Q Consensus 55 ~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~-~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~ 133 (1661)
++++..++..|. +....+..-|.+||.+|.++.|.-.. .-|+.|+...++ -+..-|+|.|+..+|.----.++
T Consensus 815 D~yLk~Il~~l~-e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~-----DssasVREAaldLvGrfvl~~~e 888 (1692)
T KOG1020|consen 815 DPYLKLILSVLG-ENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLN-----DSSASVREAALDLVGRFVLSIPE 888 (1692)
T ss_pred HHHHHHHHHHhc-CchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhc-----cchhHHHHHHHHHHhhhhhccHH
Confidence 456888888888 44688999999999999999885433 345555555555 45689999999999865544444
Q ss_pred hhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHH
Q 000326 134 ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIA 208 (1661)
Q Consensus 134 ~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~ 208 (1661)
.+.+- -..+..=+...++.+.+.++.++.-+|... ++|..+.++.--+....+.+...|.+-+|..|..+=
T Consensus 889 ~~~qy--Y~~i~erIlDtgvsVRKRvIKIlrdic~e~--pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klW 959 (1692)
T KOG1020|consen 889 LIFQY--YDQIIERILDTGVSVRKRVIKILRDICEET--PDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLW 959 (1692)
T ss_pred HHHHH--HHHHHhhcCCCchhHHHHHHHHHHHHHHhC--CChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHh
Confidence 33221 112222233567889999999999999754 455444444444444444444457777777666653
No 183
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.25 E-value=5.3 Score=51.09 Aligned_cols=143 Identities=20% Similarity=0.204 Sum_probs=105.3
Q ss_pred cccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhcc
Q 000326 51 TFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQE 130 (1661)
Q Consensus 51 ~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~ 130 (1661)
.++..|..-+||.=|.++ -.|+...|.-.++.|+...|..... ++..|+ -+++-+..+++.+|+.+|..|+..
T Consensus 368 siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLv-DMfNDE~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 368 SIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFAVR-----ALDFLV-DMFNDEIEVVRLKAIFALTMISVH 440 (823)
T ss_pred ccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHH-HHhccHHHHHHHHHHHHHHHHHHH
Confidence 577888889999988766 4899999999999999988876554 566888 788889999999999999999976
Q ss_pred CcchhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhc-c-CCHHHHHHHHHHHHHHH
Q 000326 131 HPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQ-Y-HDAKVLEHASVCLTRIA 208 (1661)
Q Consensus 131 ~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~-~-~D~~v~e~A~~aLs~L~ 208 (1661)
..++..-++.++.-|+..+..+...+--.|. +|+- .+...+.-++..|...|. + +|. ...+.|+.+|.
T Consensus 441 ---l~i~eeql~~il~~L~D~s~dvRe~l~elL~-~~~~---~d~~~i~m~v~~lL~~L~kyPqDr---d~i~~cm~~iG 510 (823)
T KOG2259|consen 441 ---LAIREEQLRQILESLEDRSVDVREALRELLK-NARV---SDLECIDMCVAHLLKNLGKYPQDR---DEILRCMGRIG 510 (823)
T ss_pred ---heecHHHHHHHHHHHHhcCHHHHHHHHHHHH-hcCC---CcHHHHHHHHHHHHHHhhhCCCCc---HHHHHHHHHHh
Confidence 5677888899999998888777655544444 3332 333444445544444432 2 343 24567888888
Q ss_pred hh
Q 000326 209 EA 210 (1661)
Q Consensus 209 ~~ 210 (1661)
.+
T Consensus 511 qn 512 (823)
T KOG2259|consen 511 QN 512 (823)
T ss_pred cc
Confidence 85
No 184
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=83.17 E-value=31 Score=43.04 Aligned_cols=187 Identities=15% Similarity=0.106 Sum_probs=111.8
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhh-ccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchh
Q 000326 57 FAPVLVGLLNHESNPDIMLLAARALTHLC-DVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTAC 135 (1661)
Q Consensus 57 ~vp~Lv~lL~~~~~~eiq~~A~raL~NLa-~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~I 135 (1661)
.|..++.=+++.+..+-+..|..-|.-|. ++.-..+..-. ..++-.+++-|-.+.+.-.++-|+..|+.|++..+...
T Consensus 287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l 365 (516)
T KOG2956|consen 287 LVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARL 365 (516)
T ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhh
Confidence 45445444444333444556655344444 33222222111 12344556455555778889999999999999888644
Q ss_pred hhcC--chHHHHhhhccCChHHHHHHHHHHHHhcc-CCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcC
Q 000326 136 LRAG--ALMAVLSYLDFFSTGVQRVALSTAANMCK-KLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFA 212 (1661)
Q Consensus 136 l~~G--gL~~LL~lLd~~~~~vqr~Al~aLsNlc~-~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~ 212 (1661)
.+.- ++..+|+--..+...+-+.|.-+...... ..|.. ++-.++.+|...|......++.++.+|+++.
T Consensus 366 ~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~-------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l- 437 (516)
T KOG2956|consen 366 FDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ-------CIVNISPLILTADEPRAVAVIKMLTKLFERL- 437 (516)
T ss_pred hchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh-------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhc-
Confidence 4321 33334444445566666666555444333 22222 2334455555588888888888999999974
Q ss_pred CCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhc
Q 000326 213 SSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCAS 263 (1661)
Q Consensus 213 ~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas 263 (1661)
..+.+..++ .++.|.+++--.+. +..+...|+.||-.|..
T Consensus 438 -~~EeL~~ll-~diaP~~iqay~S~---------SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 438 -SAEELLNLL-PDIAPCVIQAYDST---------SSTVRKTAVFCLVAMVN 477 (516)
T ss_pred -CHHHHHHhh-hhhhhHHHHHhcCc---------hHHhhhhHHHhHHHHHH
Confidence 555555555 36888888877665 66788999998887753
No 185
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=81.30 E-value=1.2e+02 Score=35.81 Aligned_cols=235 Identities=16% Similarity=0.160 Sum_probs=129.1
Q ss_pred HHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhc--cCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHH
Q 000326 107 RLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLD--FFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPL 184 (1661)
Q Consensus 107 kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd--~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~ 184 (1661)
.-|.+++..+++.|++.|..+-..-+...+...-+..++.++- ..+......++.++..+.+...... .....++..
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~-~~~~~i~~~ 84 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSP-ESAVKILRS 84 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCCh-hhHHHHHHH
Confidence 4567788999999999999998888877777777888888774 2355566666666666664322111 122223333
Q ss_pred HHHh--hccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHh
Q 000326 185 LTNL--LQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCA 262 (1661)
Q Consensus 185 L~~l--L~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLa 262 (1661)
+..- .+..-+.....+...+-.+.+. ..+.+..+- .+.+..+++++.... +|.....+.+++..+.
T Consensus 85 l~~~~~~q~~~q~~R~~~~~ll~~l~~~---~~~~l~~~~-~~fv~~~i~~~~gEk--------DPRnLl~~F~l~~~i~ 152 (262)
T PF14500_consen 85 LFQNVDVQSLPQSTRYAVYQLLDSLLEN---HREALQSMG-DDFVYGFIQLIDGEK--------DPRNLLLSFKLLKVIL 152 (262)
T ss_pred HHHhCChhhhhHHHHHHHHHHHHHHHHH---hHHHHHhch-hHHHHHHHHHhccCC--------CHHHHHHHHHHHHHHH
Confidence 3221 1122245555666666666664 333332222 357777788776552 5666666666555544
Q ss_pred cCCHHHHHHHHHcCChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhcccCCCCCCCCCCCCccccccccCCccc
Q 000326 263 SGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVR 342 (1661)
Q Consensus 263 s~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~~~~~~~~~~~~g~~~~ 342 (1661)
..-+ . ..-.+++.+++ .--+|.-..
T Consensus 153 ~~~~-----------------------------~----~~~~e~lFd~~---~cYFPI~F~------------------- 177 (262)
T PF14500_consen 153 QEFD-----------------------------I----SEFAEDLFDVF---SCYFPITFR------------------- 177 (262)
T ss_pred Hhcc-----------------------------c----chhHHHHHHHh---hheeeeeee-------------------
Confidence 3311 0 11123333333 344442111
Q ss_pred CCCCCCCCCCCCCCCCcchhhhHHHhhccCHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHhhcCCHHHH
Q 000326 343 KSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMI 419 (1661)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~f~~~l~p~Li~vy~ss~~~~VR~~~L~~i~r~v~~~~~~~L 419 (1661)
+|. ++.. .-+.......-..++..+| .|....+|.|+|-..++.. .|+..+|.+|...+..-.++.+
T Consensus 178 -pp~-~dp~---~IT~edLk~~L~~cl~s~~----~fa~~~~p~LleKL~s~~~-~~K~D~L~tL~~c~~~y~~~~~ 244 (262)
T PF14500_consen 178 -PPP-NDPY---GITREDLKRALRNCLSSTP----LFAPFAFPLLLEKLDSTSP-SVKLDSLQTLKACIENYGADSL 244 (262)
T ss_pred -CCC-CCCC---CCCHHHHHHHHHHHhcCcH----hhHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHCCHHHH
Confidence 000 0000 0000111122223334444 4667889999999987744 4999999999887765555433
No 186
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=79.61 E-value=1.8 Score=46.86 Aligned_cols=140 Identities=21% Similarity=0.225 Sum_probs=96.3
Q ss_pred HHHhhcC-CCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc----hh
Q 000326 61 LVGLLNH-ESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT----AC 135 (1661)
Q Consensus 61 Lv~lL~~-~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~----~I 135 (1661)
|+..|.. ...++++..|.-|+..+.+...+.... .+..+++.++.....+-...++.+|..+=...++ .+
T Consensus 8 lL~~L~~~~~~~~~r~~a~v~l~k~l~~~~~~~~~-----~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~ 82 (157)
T PF11701_consen 8 LLTSLDMLRQPEEVRSHALVILSKLLDAAREEFKE-----KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELF 82 (157)
T ss_dssp HHHHHHCTTTSCCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHC
T ss_pred HHHHhcccCCCHhHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3444443 334678888888888886433322222 4445565666665566666778888888666664 35
Q ss_pred hhcCchHHHHhhhc--cCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhc-cCCHH-HHHHHHHHHHH
Q 000326 136 LRAGALMAVLSYLD--FFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQ-YHDAK-VLEHASVCLTR 206 (1661)
Q Consensus 136 l~~GgL~~LL~lLd--~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~-~~D~~-v~e~A~~aLs~ 206 (1661)
...|.++.++.+.. ..+..+|..++-+++-.|.+.....+ ....+++.|..++. .+|.. +..-|+.+|+.
T Consensus 83 ~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~-I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 83 LSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTF-ISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp CTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHC-CHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHH-HHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 57888899998998 78899999999999999987655443 46779999999995 55565 77777777765
No 187
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.40 E-value=29 Score=45.64 Aligned_cols=182 Identities=16% Similarity=0.177 Sum_probs=109.1
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhh
Q 000326 57 FAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACL 136 (1661)
Q Consensus 57 ~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il 136 (1661)
+.|-|=.+|.+.. ..++++|++++.++...+++.... +|..|. -++.++..-++-.|+.+|-.+|..+|..+.
T Consensus 246 ~~~fl~s~l~~K~-emV~~EaArai~~l~~~~~r~l~p-----avs~Lq-~flssp~~~lRfaAvRtLnkvAm~~P~~v~ 318 (865)
T KOG1078|consen 246 LFPFLESCLRHKS-EMVIYEAARAIVSLPNTNSRELAP-----AVSVLQ-LFLSSPKVALRFAAVRTLNKVAMKHPQAVT 318 (865)
T ss_pred HHHHHHHHHhchh-HHHHHHHHHHHhhccccCHhhcch-----HHHHHH-HHhcCcHHHHHHHHHHHHHHHHHhCCcccc
Confidence 4555666666553 567889999999998766544333 777777 788999999999999999999999997655
Q ss_pred hcC-chHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCH
Q 000326 137 RAG-ALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSP 215 (1661)
Q Consensus 137 ~~G-gL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~ 215 (1661)
-++ -|..++.-.. -. .|..++.-+.+-......+....-++..+.=+..+-..|+.+|..+|+.+--.
T Consensus 319 ~cN~elE~lItd~N---rs---Iat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~----- 387 (865)
T KOG1078|consen 319 VCNLDLESLITDSN---RS---IATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPR----- 387 (865)
T ss_pred ccchhHHhhhcccc---cc---hhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccH-----
Confidence 443 3344333221 11 23333333333222222222333334444334444566777777776655542
Q ss_pred HHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHH
Q 000326 216 DKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAK 270 (1661)
Q Consensus 216 e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~t~ 270 (1661)
...+.+.-|..+|.... ..+-+..++.+|..++...++...
T Consensus 388 ------k~~~~m~FL~~~Lr~eG--------g~e~K~aivd~Ii~iie~~pdsKe 428 (865)
T KOG1078|consen 388 ------KHTVMMNFLSNMLREEG--------GFEFKRAIVDAIIDIIEENPDSKE 428 (865)
T ss_pred ------HHHHHHHHHHHHHHhcc--------CchHHHHHHHHHHHHHHhCcchhh
Confidence 11234566667776531 345666677777777766555433
No 188
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=78.88 E-value=3.2 Score=50.99 Aligned_cols=180 Identities=15% Similarity=0.105 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhcc----Ccc-hhhhcC----chHH
Q 000326 73 IMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQE----HPT-ACLRAG----ALMA 143 (1661)
Q Consensus 73 iq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~----~~~-~Il~~G----gL~~ 143 (1661)
+..+|.|++.-+.-...--.....-..+-..+. .-+.......++.+.|+|+||+.- -|. .-..+. -|.+
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il-~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~ 485 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAIL-MSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLK 485 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHH-HHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHH
Confidence 445777877665543221111111112333333 344444578899999999999752 111 001111 1122
Q ss_pred HHhhh---ccCChHHHHHHHHHHHHhccCC----CCchhHHHhCcHHHHH-HhhccCCHHHHHHHHHHHHHHHhhcCCCH
Q 000326 144 VLSYL---DFFSTGVQRVALSTAANMCKKL----PSDAADFVMEAVPLLT-NLLQYHDAKVLEHASVCLTRIAEAFASSP 215 (1661)
Q Consensus 144 LL~lL---d~~~~~vqr~Al~aLsNlc~~~----~~~~~~~v~~~lp~L~-~lL~~~D~~v~e~A~~aLs~L~~~~~~~~ 215 (1661)
+++.- +-....+..+|+.++.|+..-. +...-+.+.+.+..+. ..+....-+|.-+||.+++||..+ ..
T Consensus 486 ~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn---~a 562 (728)
T KOG4535|consen 486 MLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKN---PA 562 (728)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcC---cc
Confidence 22221 1224456666666666665411 1111112222222222 223334568999999999999984 22
Q ss_pred HHHHHHHhC-CcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcC
Q 000326 216 DKLDELCNH-GLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASG 264 (1661)
Q Consensus 216 e~~~~li~~-gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~ 264 (1661)
-.++..--+ -+.+.|..|+.... +..+.+.|..+|..-...
T Consensus 563 ~~lq~~~wA~~~F~~L~~Lv~~~~--------NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 563 LPLQTAPWASQAFNALTSLVTSCK--------NFKVRIRAAAALSVPGKR 604 (728)
T ss_pred ccccCCCchHHHHHHHHHHHHHhc--------cceEeehhhhhhcCCCCc
Confidence 112222222 36788888887653 556777777777665543
No 189
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=78.27 E-value=31 Score=42.14 Aligned_cols=204 Identities=10% Similarity=0.066 Sum_probs=127.5
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcch-------
Q 000326 62 VGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTA------- 134 (1661)
Q Consensus 62 v~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~------- 134 (1661)
-.+|....+.+.+.++|.-|+. .+...+.++.|+ ..|..-..+.+..+.....++-+...+.
T Consensus 49 K~IL~G~~e~ep~~e~v~qLa~----------Ei~~~dll~~Li-~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~ 117 (335)
T PF08569_consen 49 KEILYGDGEPEPNPEQVAQLAQ----------EIYRSDLLYLLI-RNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVD 117 (335)
T ss_dssp HHHHHS-SS----HHHHHHHHH----------HHHHHTHHHHHH-HTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHH
T ss_pred HHHhcCCCCCCCCHHHHHHHHH----------HHHHhCHHHHHH-HHhhhCCCcccccHHHHHHHHHhhccCCCCCchHH
Confidence 3444444445555555433332 455668888888 5666666788889999999998765431
Q ss_pred -hhhc--CchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhc
Q 000326 135 -CLRA--GALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAF 211 (1661)
Q Consensus 135 -Il~~--GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~ 211 (1661)
+..+ ..+..|+...+ .+.+--.+-.++..|++...-..+..-.+.+-.+...++.+.-+|..+|...+.-|-..
T Consensus 118 yl~~~~peil~~L~~gy~--~~dial~~g~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~- 194 (335)
T PF08569_consen 118 YLERHRPEILDILLRGYE--NPDIALNCGDMLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTR- 194 (335)
T ss_dssp HHHT--THHHHHHHHGGG--STTTHHHHHHHHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHS-
T ss_pred HHHhCCHHHHHHHHHHhc--CccccchHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhc-
Confidence 2222 12333333333 34444455566666666544444444456777788888999999999999999987775
Q ss_pred CCCHHHHHHHHhCC---cHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCC---HHHHHHHHHcCChHHHHHhh
Q 000326 212 ASSPDKLDELCNHG---LVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGS---PLCAKTLLHLGISGILKDIL 285 (1661)
Q Consensus 212 ~~~~e~~~~li~~g---ll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s---~~~t~~Ll~~gil~~L~~LL 285 (1661)
+.......+..+ .+.....||.++ +.-++..+++.|+.|...- .-.++.+-+..-+..++.||
T Consensus 195 --hk~~~a~fl~~n~d~ff~~~~~Ll~s~---------NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL 263 (335)
T PF08569_consen 195 --HKKLVAEFLSNNYDRFFQKYNKLLESS---------NYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLL 263 (335)
T ss_dssp --SHHHHHHHHHHTHHHHHHHHHHHCT-S---------SHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHT
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHHccCC---------CeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHh
Confidence 777777777654 677888899776 6789999999999987432 22234454566788888888
Q ss_pred cCCCc
Q 000326 286 SGSGV 290 (1661)
Q Consensus 286 ~~~~~ 290 (1661)
....+
T Consensus 264 ~d~sk 268 (335)
T PF08569_consen 264 RDKSK 268 (335)
T ss_dssp T-S-H
T ss_pred cCcch
Confidence 87654
No 190
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=77.93 E-value=21 Score=45.18 Aligned_cols=143 Identities=16% Similarity=0.146 Sum_probs=92.3
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhh
Q 000326 57 FAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACL 136 (1661)
Q Consensus 57 ~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il 136 (1661)
.+.-|...|.++...+.+..+.-||.-+++..|+.... |+..||.-.-.++|..+.. ..|+-+-++.|.+--
T Consensus 413 ~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~fIEDcey~~I~v---rIL~iLG~EgP~a~~ 484 (898)
T COG5240 413 YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCTFIEDCEYHQITV---RILGILGREGPRAKT 484 (898)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHHHHhhcchhHHHH---HHHHHhcccCCCCCC
Confidence 46667777776667888889999999999999988876 4568996666677877755 455555555553111
Q ss_pred hcCchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHh
Q 000326 137 RAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAE 209 (1661)
Q Consensus 137 ~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~ 209 (1661)
-.--+..+..-+--.+..+...|+.|++-.+-+....- .-+.+..+|...|+..|.+|.+.|..+|-+|-.
T Consensus 485 P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~--~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 485 PGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVV--SPQSVENALKRCLNDQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccc--cHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence 01111112222212234555567888876665442211 123456678888999999999999999888765
No 191
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=77.76 E-value=9.6 Score=45.46 Aligned_cols=136 Identities=21% Similarity=0.327 Sum_probs=93.4
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch-hhhcccccHHHHHHHH---hc--------CCcHHHHHHHHHHH
Q 000326 57 FAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC-AAVVHYGAVTCFVARL---LT--------IEYMDLAEQSLQAL 124 (1661)
Q Consensus 57 ~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~-~~vV~~GaVp~Lv~kL---L~--------~~~~dl~Eqal~aL 124 (1661)
++|.++.++.+. +++++..+|.||..+....+... ..+.+.|...++-+.| +. .+...+...+.-||
T Consensus 120 iiP~iL~llDD~-~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLLDDY-SPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHhcCC-CHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 689999999876 69999999999999998665443 2255666555443322 22 23356777777787
Q ss_pred HHhhcc---Cc---c-----hhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCC
Q 000326 125 KKISQE---HP---T-----ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHD 193 (1661)
Q Consensus 125 ~nIS~~---~~---~-----~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D 193 (1661)
-.++.- .. . .++..|.+..+....++..+.+....+..+..++...........+.++|.|...|.+.+
T Consensus 199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~npf 278 (282)
T PF10521_consen 199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENPF 278 (282)
T ss_pred HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCC
Confidence 777442 11 1 466666666655555544577777777777777776666666778888999888887654
No 192
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=77.05 E-value=6.5 Score=40.47 Aligned_cols=71 Identities=14% Similarity=0.139 Sum_probs=59.6
Q ss_pred CcHHHHHHhh-ccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHH
Q 000326 180 EAVPLLTNLL-QYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLL 258 (1661)
Q Consensus 180 ~~lp~L~~lL-~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L 258 (1661)
.++-.|..+| .+.|+.++.-||.=|+.++.. .|.....+-+.|+=.++++||.+. ++++...||.++
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~---~p~gr~ii~~lg~K~~vM~Lm~h~---------d~eVr~eAL~av 110 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRH---YPNGRNIIEKLGAKERVMELMNHE---------DPEVRYEALLAV 110 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH----GGGHHHHHHHSHHHHHHHHTS-S---------SHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHH---ChhHHHHHHhcChHHHHHHHhcCC---------CHHHHHHHHHHH
Confidence 3677888888 556899999999999999996 688888888889999999999997 689999999998
Q ss_pred HHHh
Q 000326 259 STCA 262 (1661)
Q Consensus 259 ~nLa 262 (1661)
..+.
T Consensus 111 Qklm 114 (119)
T PF11698_consen 111 QKLM 114 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 193
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=77.01 E-value=1.9e+02 Score=39.18 Aligned_cols=239 Identities=15% Similarity=0.133 Sum_probs=139.7
Q ss_pred CHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHH
Q 000326 26 EEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFV 105 (1661)
Q Consensus 26 D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv 105 (1661)
+-...-.++..++.++....+... ..-++|.+..+-.. +-......||....-..-..++ ..|+.- +..++
T Consensus 172 et~vr~k~ve~l~~v~~~~~~~~~----~~~lv~l~~~l~~~-d~~~sr~sacglf~~~~~~~~~---~~vk~e-lr~~~ 242 (759)
T KOG0211|consen 172 ETGVREKAVESLLKVAVGLPKEKL----REHLVPLLKRLATG-DWFQSRLSACGLFGKLYVSLPD---DAVKRE-LRPIV 242 (759)
T ss_pred HHHHHHHHHHHHHHHHHhcChHHH----HHHHHHHHHHccch-hhhhcchhhhhhhHHhccCCCh---HHHHHH-HHHHH
Confidence 334566667777776665443221 23345544444333 2334455666666655544332 222222 33444
Q ss_pred HHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHH
Q 000326 106 ARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLL 185 (1661)
Q Consensus 106 ~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L 185 (1661)
..|-.-.++.++..+..=+++++.--+..+...+.++.+.+++......++..|+-.+.++......+. .......+.+
T Consensus 243 ~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~-d~~~~~~~~l 321 (759)
T KOG0211|consen 243 QSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD-DVVKSLTESL 321 (759)
T ss_pred HhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-hhhhhhhHHH
Confidence 467677788999999999999998877788889999999999998888898888888888877554443 5677788888
Q ss_pred HHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHh-cC
Q 000326 186 TNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCA-SG 264 (1661)
Q Consensus 186 ~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLa-s~ 264 (1661)
++.....+..+...+...+.-+...+.. .......++....++.... .+....+..-..-++ ..
T Consensus 322 ~~~~~d~~~~v~~~~~~~~~~L~~~~~~------~~~~~~~~~~~~~l~~~~~---------~e~r~a~a~~~~~l~~~l 386 (759)
T KOG0211|consen 322 VQAVEDGSWRVSYMVADKFSELSSAVGP------SATRTQLVPPVSNLLKDEE---------WEVRYAIAKKVQKLACYL 386 (759)
T ss_pred HHHhcChhHHHHHHHhhhhhhHHHHhcc------ccCcccchhhHHHHhcchh---------hhhhHHhhcchHHHhhhc
Confidence 8887766655544333333323222100 1222346677777776542 112222222222222 22
Q ss_pred CHHHHHHHHHcCChHHHHHhhcCCC
Q 000326 265 SPLCAKTLLHLGISGILKDILSGSG 289 (1661)
Q Consensus 265 s~~~t~~Ll~~gil~~L~~LL~~~~ 289 (1661)
+...-..+....+++.+..+.....
T Consensus 387 ~~~~~~~i~~~~ilp~~~~lv~d~~ 411 (759)
T KOG0211|consen 387 NASCYPNIPDSSILPEVQVLVLDNA 411 (759)
T ss_pred CcccccccchhhhhHHHHHHHhccc
Confidence 2222234555666777777776554
No 194
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=76.89 E-value=2.1e+02 Score=36.77 Aligned_cols=113 Identities=16% Similarity=0.125 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHH
Q 000326 27 EGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVA 106 (1661)
Q Consensus 27 ~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~ 106 (1661)
-..+..|+.+|++.+..-.- -....+|-.--.++..+...+++..+...|..+.......... .. -.+..
T Consensus 4 l~~R~~a~~~l~~~i~~~~~-----~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~-~R----~~fF~ 73 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPL-----SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGL-MR----AEFFR 73 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCc-----hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHH-HH----HHHHH
Confidence 35688999999998876432 1223355555566666656778878888888877755431111 10 11221
Q ss_pred HHhcCCcHHHHHHHHHHHHHhhccCcc-hhhhcCchHHHHhhhc
Q 000326 107 RLLTIEYMDLAEQSLQALKKISQEHPT-ACLRAGALMAVLSYLD 149 (1661)
Q Consensus 107 kLL~~~~~dl~Eqal~aL~nIS~~~~~-~Il~~GgL~~LL~lLd 149 (1661)
.+.....++--..-+.+|..|+.++.+ .-++....+.++..|.
T Consensus 74 ~I~~~~~~~d~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~ 117 (464)
T PF11864_consen 74 DISDPSNDDDFDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLE 117 (464)
T ss_pred HHhcCCCchhHHHHHHHHHHHHcCCcCchhcccchHHHHHHHHH
Confidence 233333343334455566666655555 3456777777777775
No 195
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=76.80 E-value=9.2 Score=50.82 Aligned_cols=144 Identities=19% Similarity=0.211 Sum_probs=101.8
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCccccccc-ccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000326 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFS-VDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1661)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~-~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~ 91 (1661)
-.|.|+.+..+. +-.+.-.-+..|+.+|..-.-+.+ .+ ...+.|.|++.|..++ +++|..+.++|--+..-.+.-
T Consensus 868 ivP~l~~~~~t~-~~~~K~~yl~~LshVl~~vP~~vl--lp~~~~LlPLLLq~Ls~~D-~~v~vstl~~i~~~l~~~~tL 943 (1030)
T KOG1967|consen 868 IVPILVSKFETA-PGSQKHNYLEALSHVLTNVPKQVL--LPQFPMLLPLLLQALSMPD-VIVRVSTLRTIPMLLTESETL 943 (1030)
T ss_pred hHHHHHHHhccC-CccchhHHHHHHHHHHhcCCHHhh--ccchhhHHHHHHHhcCCCc-cchhhhHhhhhhHHHHhcccc
Confidence 456777777743 667777788889988884322221 12 2247999999999885 899999999998777654433
Q ss_pred hhhhcccccHHHHHHHHhcCCc---HHHHHHHHHHHHHhhccCcc-h--hhhcCchHHHHhhhccCChHHHHHHHHH
Q 000326 92 CAAVVHYGAVTCFVARLLTIEY---MDLAEQSLQALKKISQEHPT-A--CLRAGALMAVLSYLDFFSTGVQRVALST 162 (1661)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~---~dl~Eqal~aL~nIS~~~~~-~--Il~~GgL~~LL~lLd~~~~~vqr~Al~a 162 (1661)
...-+ ...||.|+ .|-...+ .-+++.|+++|+.|.+.-|. . -.+--+|.++...||...--+.+.|+.+
T Consensus 944 ~t~~~-~Tlvp~lL-sls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 944 QTEHL-STLVPYLL-SLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred chHHH-hHHHHHHH-hcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 22222 24788888 5655444 67999999999999996553 3 3456688999999998777777777665
No 196
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=76.61 E-value=33 Score=40.13 Aligned_cols=197 Identities=13% Similarity=0.131 Sum_probs=115.4
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHH----HHh---hcCCC-CHHHHHHHHHHHH---Hhh
Q 000326 17 ILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVL----VGL---LNHES-NPDIMLLAARALT---HLC 85 (1661)
Q Consensus 17 Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~L----v~l---L~~~~-~~eiq~~A~raL~---NLa 85 (1661)
+|..|. +++.+..|+.+|++......+-..----.-|.+..| +.+ |..+. ....-...|.||+ .+|
T Consensus 2 ~i~~L~---~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vA 78 (262)
T PF04078_consen 2 LILDLC---NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVA 78 (262)
T ss_dssp HHHHTS---SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHH
T ss_pred hhHHhc---CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 444553 578899999999987654433111011122333333 332 22111 1222224455443 344
Q ss_pred ccCCcchhhhcccccHHHHHHHHhcCC-----cHHHHHHHHHHHHHhhccCcc----hhhhcCchHHHHhhhccCChHHH
Q 000326 86 DVLPSSCAAVVHYGAVTCFVARLLTIE-----YMDLAEQSLQALKKISQEHPT----ACLRAGALMAVLSYLDFFSTGVQ 156 (1661)
Q Consensus 86 ~~~p~~~~~vV~~GaVp~Lv~kLL~~~-----~~dl~Eqal~aL~nIS~~~~~----~Il~~GgL~~LL~lLd~~~~~vq 156 (1661)
. .|+.+..++++.+.--|. -.|... ++-++-.++.+++-+...... ..++...++.|+..+.+.+.-.+
T Consensus 79 s-hpetr~~Fl~a~iplyLy-PfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSK 156 (262)
T PF04078_consen 79 S-HPETRMPFLKAHIPLYLY-PFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSK 156 (262)
T ss_dssp H--TTTHHHHHHTTGGGGGH-HHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHH
T ss_pred c-ChHHHHHHHHcCchhheh-hhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHH
Confidence 4 678888888877533333 344333 366777777777777764443 57788999999999998777677
Q ss_pred HHHHHHHHHhccC--------CCCchhHHHhCcHHHHHHh-hccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q 000326 157 RVALSTAANMCKK--------LPSDAADFVMEAVPLLTNL-LQYHDAKVLEHASVCLTRIAEAFASSPDKLDELC 222 (1661)
Q Consensus 157 r~Al~aLsNlc~~--------~~~~~~~~v~~~lp~L~~l-L~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li 222 (1661)
..|+.++-.+... ...+.|..+..++-.++.- ....++.+++..+.|..+|++ ++...+++-
T Consensus 157 tvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsd----nprar~aL~ 227 (262)
T PF04078_consen 157 TVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSD----NPRAREALR 227 (262)
T ss_dssp HHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTT----STTHHHHHH
T ss_pred HHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcc----CHHHHHHHH
Confidence 7777776654432 1345566666666665554 556789999999999999999 555555444
No 197
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=76.15 E-value=7.1 Score=36.72 Aligned_cols=67 Identities=10% Similarity=-0.012 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHH-HHHHHHHHHHHHHhhcCCCHHHHHHHHhCC
Q 000326 155 VQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAK-VLEHASVCLTRIAEAFASSPDKLDELCNHG 225 (1661)
Q Consensus 155 vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~-v~e~A~~aLs~L~~~~~~~~e~~~~li~~g 225 (1661)
-.|.|+|++.|++.......+....++++.++++..+.+.- +.--|.++|+-|+. ..+-.+.+-+.|
T Consensus 3 ~lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~----T~~G~~~L~~~g 70 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS----TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC----CHHHHHHHHHcC
Confidence 35789999999998765555555568999999997776654 44455556665555 666666665544
No 198
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.61 E-value=67 Score=45.47 Aligned_cols=320 Identities=16% Similarity=0.094 Sum_probs=158.4
Q ss_pred HHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCC
Q 000326 33 ALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIE 112 (1661)
Q Consensus 33 Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~ 112 (1661)
.-++||.+.+.-++|-+ |=.++++-++.-...-+.=||.-+.-|+.-.-+....-. .-.||.|. +-..-+
T Consensus 941 TYKELc~LASdl~qPdL--------VYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l-~kLIPrLy-RY~yDP 1010 (1702)
T KOG0915|consen 941 TYKELCNLASDLGQPDL--------VYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYL-KKLIPRLY-RYQYDP 1010 (1702)
T ss_pred HHHHHHHHHhhcCChHH--------HHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHH-HHhhHHHh-hhccCC
Confidence 34555555554433322 333444444332233334455556666653322222111 12566666 555555
Q ss_pred cHHHHHHHHHHHHHhhccCcchhhhc---CchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHH-Hh
Q 000326 113 YMDLAEQSLQALKKISQEHPTACLRA---GALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLT-NL 188 (1661)
Q Consensus 113 ~~dl~Eqal~aL~nIS~~~~~~Il~~---GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~-~l 188 (1661)
+..++ +|..-+-|.-...++.+++. ..+.-||.-|....=.+...++.++..+.++.+.++ +.+-+|-|- .+
T Consensus 1011 ~~~Vq-~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~---~~e~lpelw~~~ 1086 (1702)
T KOG0915|consen 1011 DKKVQ-DAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQ---VKEKLPELWEAA 1086 (1702)
T ss_pred cHHHH-HHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHH---HHHHHHHHHHHH
Confidence 66665 45555555544444433332 334445555555555677789999999999865444 333344333 23
Q ss_pred hccCC------HHHHHHHHHHHHHHHhhcCC--CHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHH
Q 000326 189 LQYHD------AKVLEHASVCLTRIAEAFAS--SPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLST 260 (1661)
Q Consensus 189 L~~~D------~~v~e~A~~aLs~L~~~~~~--~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~n 260 (1661)
+..-| .+.-..+|.+|+.||-.... +...-.++++ -++|.|+. .+ .- +.-+++..-+|.+|.-
T Consensus 1087 fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~-~iLPfLl~---~g----im-s~v~evr~~si~tl~d 1157 (1702)
T KOG0915|consen 1087 FRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALD-IILPFLLD---EG----IM-SKVNEVRRFSIGTLMD 1157 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHH-HHHHHHhc---cC----cc-cchHHHHHHHHHHHHH
Confidence 33333 24445677788877765311 1112222221 13333322 11 11 2245677778888888
Q ss_pred HhcCCHHHHHHHHHcCChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhcccCCCCCCCCCCCCccccccccCCc
Q 000326 261 CASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPV 340 (1661)
Q Consensus 261 Las~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~~~~~~~~~~~~g~~ 340 (1661)
|+..+.. .|.-.+...+.-|+...+.....-+.-+..+-.+|=+++++
T Consensus 1158 l~Kssg~----~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealD---------------------------- 1205 (1702)
T KOG0915|consen 1158 LAKSSGK----ELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALD---------------------------- 1205 (1702)
T ss_pred HHHhchh----hhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHH----------------------------
Confidence 8877655 34444444444444433321111110011111223333333
Q ss_pred ccCCCCCCCCCCCCCCCCcchhhhHHHhhccCHH------HH----HHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Q 000326 341 VRKSPASSSGKQDDTNGNASEVSAREKLLSDQPE------LL----QQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKL 410 (1661)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e------~~----~~f~~~l~p~Li~vy~ss~~~~VR~~~L~~i~r~ 410 (1661)
..|.+.-++.|- ++ -..+..|+|.+++..-++|+..-|-.|-..|.-+
T Consensus 1206 ----------------------t~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L 1263 (1702)
T KOG0915|consen 1206 ----------------------TLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLL 1263 (1702)
T ss_pred ----------------------HHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHH
Confidence 122222222221 01 1345799999999999999999999998888776
Q ss_pred hhcCCHHHHHHHhhhcchHHHHHHHh
Q 000326 411 MYFSSAEMIQSLLSVTNISSFLAGVL 436 (1661)
Q Consensus 411 v~~~~~~~L~~~l~~~~~ss~la~il 436 (1661)
+.-+. ....|++.-+-+.+
T Consensus 1264 ~~r~~-------~emtP~sgKll~al 1282 (1702)
T KOG0915|consen 1264 VQRLG-------SEMTPYSGKLLRAL 1282 (1702)
T ss_pred HHHhc-------cccCcchhHHHHHH
Confidence 63322 22246665555443
No 199
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=75.59 E-value=1.2e+02 Score=37.73 Aligned_cols=182 Identities=12% Similarity=0.118 Sum_probs=112.1
Q ss_pred CHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcC----------CCCHHHHHHHHHHHHHhhccCCcchhhh
Q 000326 26 EEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNH----------ESNPDIMLLAARALTHLCDVLPSSCAAV 95 (1661)
Q Consensus 26 D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~----------~~~~eiq~~A~raL~NLa~~~p~~~~~v 95 (1661)
|..-+..|-..|.+.|...++.+-. .....-++.|++.++. +.+..+-.+|.++|+.+... |+-...+
T Consensus 6 ~~~~r~daY~~l~~~l~~~~~~~~~-~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~-~~i~~~l 83 (372)
T PF12231_consen 6 DRSSRLDAYMTLNNALKAYDNLPDR-QALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYH-PEIVSTL 83 (372)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHcc-HHHHhhC
Confidence 6677777777777777766543321 1112224445544431 12456777999999998842 2222222
Q ss_pred cccc---cHHHHHHHHhc-CCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhh---c--cCChHHHHHHHHHHHHh
Q 000326 96 VHYG---AVTCFVARLLT-IEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYL---D--FFSTGVQRVALSTAANM 166 (1661)
Q Consensus 96 V~~G---aVp~Lv~kLL~-~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lL---d--~~~~~vqr~Al~aLsNl 166 (1661)
-+.- .|...+..|.. .....+.-.++|+|..- ..+..++...-+..++..+ . +.+..+...++.++.++
T Consensus 84 ~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q--~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~l 161 (372)
T PF12231_consen 84 SDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQ--KFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRL 161 (372)
T ss_pred ChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC--CCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHH
Confidence 2111 23334423322 33468888888888752 2333455555555555544 2 56788999999999999
Q ss_pred ccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhc
Q 000326 167 CKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAF 211 (1661)
Q Consensus 167 c~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~ 211 (1661)
....|..-...+..=+|.|...+-+....+...|..++..+...+
T Consensus 162 l~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l 206 (372)
T PF12231_consen 162 LSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCL 206 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHh
Confidence 987766655556667888888888888888888777766665443
No 200
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=75.43 E-value=25 Score=46.41 Aligned_cols=219 Identities=15% Similarity=0.065 Sum_probs=142.4
Q ss_pred ccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHH-HHHHHHHHHHhh
Q 000326 50 STFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDL-AEQSLQALKKIS 128 (1661)
Q Consensus 50 ~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl-~Eqal~aL~nIS 128 (1661)
...+..|+...|..+.... .++..+.+..+|.-..+ .+.. .. ...|++++ .++.....-+ .-.++.+|.|++
T Consensus 498 ~~~Ik~~~~~aLlrl~~~q-~e~akl~~~~aL~~~i~-f~~~--~~--~~v~~~~~-s~~~~d~~~~en~E~L~altnLa 570 (748)
T KOG4151|consen 498 AKKIKPGGYEALLRLGQQQ-FEEAKLKWYHALAGKID-FPGE--RS--YEVVKPLD-SALHNDEKGLENFEALEALTNLA 570 (748)
T ss_pred CccccccHHHHHHHHHHHh-chHHHHHHHHHHhhhcC-CCCC--ch--hhhhhhhc-chhhhhHHHHHHHHHHHHhhccc
Confidence 3466778899999887644 35666666666651111 1111 11 23677777 5555544222 225788899887
Q ss_pred ccCcc---hhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCC-CchhHH-HhCcHHHHHHhhccCCHHHHHHHHHH
Q 000326 129 QEHPT---ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLP-SDAADF-VMEAVPLLTNLLQYHDAKVLEHASVC 203 (1661)
Q Consensus 129 ~~~~~---~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~-~~~~~~-v~~~lp~L~~lL~~~D~~v~e~A~~a 203 (1661)
.-+.. .|++.-++..+-.++...++..||.++..+.||.-+.- ...+.. -..-+|.....+...+.+.-..++.+
T Consensus 571 s~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a 650 (748)
T KOG4151|consen 571 SISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGA 650 (748)
T ss_pred CcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhcccc
Confidence 65442 58888888887777778899999999999999987531 111111 14567777777777777777777766
Q ss_pred HHHHHhhcCCCHHHHH-HHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHH
Q 000326 204 LTRIAEAFASSPDKLD-ELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILK 282 (1661)
Q Consensus 204 Ls~L~~~~~~~~e~~~-~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~ 282 (1661)
+.-|+.. ....+. ..--..-...++.++.+. +..++.--+.++.|+.....++...++...+++.+.
T Consensus 651 ~a~I~sv---~~n~c~~~~~~~~~~e~~~~~i~~~---------~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~ 718 (748)
T KOG4151|consen 651 LAAITSV---VENHCSRILELLEWLEILVRAIQDE---------DDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLS 718 (748)
T ss_pred ccchhhc---chhhhhhHHHhhcchHHHHHhhcCc---------hhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHH
Confidence 6655543 222222 111123456667777665 577888888888888888888888888888777776
Q ss_pred HhhcC
Q 000326 283 DILSG 287 (1661)
Q Consensus 283 ~LL~~ 287 (1661)
.+=.+
T Consensus 719 ~~~~~ 723 (748)
T KOG4151|consen 719 GLQKL 723 (748)
T ss_pred HHHHh
Confidence 65444
No 201
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=75.17 E-value=1.5e+02 Score=40.88 Aligned_cols=208 Identities=14% Similarity=0.085 Sum_probs=116.1
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch
Q 000326 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC 92 (1661)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~ 92 (1661)
-++.|+.+|+.. |..++-.|+.-+.++..... ....+.+|...++++..-+....-.-||-+|+-++...---.
T Consensus 342 vie~Lls~l~d~-dt~VrWSaAKg~grvt~rlp-----~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 342 VIEHLLSALSDT-DTVVRWSAAKGLGRVTSRLP-----PELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHhccCC-cchhhHHHHHHHHHHHccCc-----HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 355666677765 88999999999988887653 234566788888887755445666689999999986432222
Q ss_pred hhhcccccHHHHHHHHhcCCc--------HHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhh----cc-CChHHHHHH
Q 000326 93 AAVVHYGAVTCFVARLLTIEY--------MDLAEQSLQALKKISQEHPTACLRAGALMAVLSYL----DF-FSTGVQRVA 159 (1661)
Q Consensus 93 ~~vV~~GaVp~Lv~kLL~~~~--------~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lL----d~-~~~~vqr~A 159 (1661)
..+. .+||.++ +=+.-+. .-+++.|+.++--.++-....-++. .+..|...| -| ...++.|.|
T Consensus 416 s~l~--dVvplI~-kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l~~L~s~LL~~AlFDrevncRRAA 491 (1133)
T KOG1943|consen 416 SLLE--DVVPLIL-KALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VLQSLASALLIVALFDREVNCRRAA 491 (1133)
T ss_pred HHHH--HHHHHHH-HHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HHHHHHHHHHHHHhcCchhhHhHHH
Confidence 3333 3677777 4333332 2345555544444454433221111 222222211 12 345666666
Q ss_pred HHHHHHhccC---CCC-------chh----------H-----------HHhCcHHHHHHh-hccCCHHHHHHHHHHHHHH
Q 000326 160 LSTAANMCKK---LPS-------DAA----------D-----------FVMEAVPLLTNL-LQYHDAKVLEHASVCLTRI 207 (1661)
Q Consensus 160 l~aLsNlc~~---~~~-------~~~----------~-----------~v~~~lp~L~~l-L~~~D~~v~e~A~~aLs~L 207 (1661)
..++-..... .|. .++ . ....++..|..- +.|=|.++.+.+.|||.+|
T Consensus 492 sAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~L 571 (1133)
T KOG1943|consen 492 SAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKL 571 (1133)
T ss_pred HHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence 6665533331 110 000 0 011122222222 5567999999999999998
Q ss_pred HhhcCCCHHHHHHHHhCCcHHHHHHhhccC
Q 000326 208 AEAFASSPDKLDELCNHGLVTQAATLISTS 237 (1661)
Q Consensus 208 ~~~~~~~~e~~~~li~~gll~~Lv~LL~~~ 237 (1661)
+.- .++. ...+.++.++.-....
T Consensus 572 s~~---~pk~----~a~~~L~~lld~~ls~ 594 (1133)
T KOG1943|consen 572 SLT---EPKY----LADYVLPPLLDSTLSK 594 (1133)
T ss_pred HHh---hHHh----hcccchhhhhhhhcCC
Confidence 874 3332 3334566666655444
No 202
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=75.15 E-value=57 Score=39.56 Aligned_cols=180 Identities=18% Similarity=0.128 Sum_probs=108.9
Q ss_pred cHHHHHHHHHHHHHhhccCcc--hhh--hcCchHHHHhhhccCChHHHHHHHHHHHHhccCC--CCchhHHHhCcHHHHH
Q 000326 113 YMDLAEQSLQALKKISQEHPT--ACL--RAGALMAVLSYLDFFSTGVQRVALSTAANMCKKL--PSDAADFVMEAVPLLT 186 (1661)
Q Consensus 113 ~~dl~Eqal~aL~nIS~~~~~--~Il--~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~--~~~~~~~v~~~lp~L~ 186 (1661)
....+++++..|.++-..+.. .|. ..-.+..++..++.....-+.-|+.++.=+|-.. ..........+.|.|.
T Consensus 56 ~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~ 135 (309)
T PF05004_consen 56 SSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLK 135 (309)
T ss_pred CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHH
Confidence 367788888888888655442 222 2235677777887666677777888888888753 3555677889999999
Q ss_pred HhhccCC--HHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCC----CCCChhHHHHHHHHHHH
Q 000326 187 NLLQYHD--AKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQ----ASLSTPTYTGLIRLLST 260 (1661)
Q Consensus 187 ~lL~~~D--~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~----~~~s~~i~~~alr~L~n 260 (1661)
.++.... .++...+|.||+-++---...++.+..+++ .+..+..+..... .|.. ..-++.++..||.+-+.
T Consensus 136 ~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~-~~~~~~~~~~~~~~l~~aAL~aW~l 212 (309)
T PF05004_consen 136 RILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKS-DGNAPVVAAEDDAALVAAALSAWAL 212 (309)
T ss_pred HHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCc-CCCcccccCCCccHHHHHHHHHHHH
Confidence 9987654 455556665665544321124555553332 2332222221110 1110 11245799999999999
Q ss_pred HhcCCHHH-HHHHHHcCChHHHHHhhcCCCccccccc
Q 000326 261 CASGSPLC-AKTLLHLGISGILKDILSGSGVSANSAV 296 (1661)
Q Consensus 261 Las~s~~~-t~~Ll~~gil~~L~~LL~~~~~~~~~~~ 296 (1661)
|.+.-+.. ...+++ ..++.|..+|.+.......++
T Consensus 213 Llt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAA 248 (309)
T PF05004_consen 213 LLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAA 248 (309)
T ss_pred HHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHH
Confidence 88766552 233333 347899999998776444433
No 203
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=74.87 E-value=47 Score=38.98 Aligned_cols=94 Identities=19% Similarity=0.150 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHh-cCCcHHHHHHHHHHHHHhhccCcc---hhhhcCchHHHHhhhc
Q 000326 74 MLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLL-TIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYLD 149 (1661)
Q Consensus 74 q~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL-~~~~~dl~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lLd 149 (1661)
...|.++|--++--.|.++..+.++.++..|+ .|+ ...++.++-.|+.+|-.|-.+++. ..-+.+|+..+..++.
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll-~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLL-DLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHH-HHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 44577888888888999999999999999999 777 557899999999999999999886 3556899999999998
Q ss_pred cC--ChHHHHHHHHHHHHhcc
Q 000326 150 FF--STGVQRVALSTAANMCK 168 (1661)
Q Consensus 150 ~~--~~~vqr~Al~aLsNlc~ 168 (1661)
.. +..+.-+++-.+.-.+.
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred cccccHHHhHHHHHHHHHHHc
Confidence 53 44555555555554444
No 204
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=74.80 E-value=21 Score=41.12 Aligned_cols=121 Identities=20% Similarity=0.213 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHhhccCcchhhh----cCchHHHHhhh--------ccC-------ChHHHHHHHHHHHHhccCC----
Q 000326 114 MDLAEQSLQALKKISQEHPTACLR----AGALMAVLSYL--------DFF-------STGVQRVALSTAANMCKKL---- 170 (1661)
Q Consensus 114 ~dl~Eqal~aL~nIS~~~~~~Il~----~GgL~~LL~lL--------d~~-------~~~vqr~Al~aLsNlc~~~---- 170 (1661)
..++|.|+-+|.|||+.-.-..+. --.+..||+.. |.| ..+-||-|+-+++-+|-..
T Consensus 80 ~~lREnalV~laNisgqLdLs~~~e~I~~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~e~NVD 159 (257)
T PF12031_consen 80 EQLRENALVTLANISGQLDLSDYPESIARPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVIENNVD 159 (257)
T ss_pred HHHhhcceEeeeeeeeeeecccCchHHHHHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhheeccCcc
Confidence 468999999999999753321111 12333333333 222 2578999999999999843
Q ss_pred ---CCchhHHHhCcHHHHHHhhcc-CCHHHHHHHHHHHHHHHhhcCCCHHHHHHHH-hCCcHHHHHHhhccC
Q 000326 171 ---PSDAADFVMEAVPLLTNLLQY-HDAKVLEHASVCLTRIAEAFASSPDKLDELC-NHGLVTQAATLISTS 237 (1661)
Q Consensus 171 ---~~~~~~~v~~~lp~L~~lL~~-~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li-~~gll~~Lv~LL~~~ 237 (1661)
..+.+..++..+..|+++|.. +|+-+.|-|+..|++++.+ +......+. +.+.|..|+..|...
T Consensus 160 liLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~---~~~~~r~iA~q~~~i~~Li~FiE~a 228 (257)
T PF12031_consen 160 LILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQG---DEAAARAIAMQKPCISHLIAFIEDA 228 (257)
T ss_pred eeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcc---cHHHHHHHHHhhchHHHHHHHHHHH
Confidence 245566788889999999875 5788999999999999996 555444443 456788888887653
No 205
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.27 E-value=26 Score=46.06 Aligned_cols=287 Identities=15% Similarity=0.152 Sum_probs=144.7
Q ss_pred HHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccC-CHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHH
Q 000326 154 GVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYH-DAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAAT 232 (1661)
Q Consensus 154 ~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~-D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~ 232 (1661)
-+.|..+|++..-..-. ...+...-+-..+.++|+.. |.-|.-.+..++.-+++.+.-+++....++ ..+...+.+
T Consensus 502 iiRRRVa~ilg~Wvsvq--~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~l-enlf~~lfk 578 (978)
T KOG1993|consen 502 IIRRRVAWILGQWVSVQ--QKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYL-ENLFVLLFK 578 (978)
T ss_pred HHHHHHHHHHhhhhhee--chHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhH-HHHHHHHHH
Confidence 45677888888776521 11223444666788888887 666777888999999998877888777777 455666666
Q ss_pred hhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHH--------------------HHHHHcCChHHHHHhhcCCC--c
Q 000326 233 LISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCA--------------------KTLLHLGISGILKDILSGSG--V 290 (1661)
Q Consensus 233 LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~t--------------------~~Ll~~gil~~L~~LL~~~~--~ 290 (1661)
+|..-. .-+++..++.+|+.+...-.+++ ..++.+-++.+|.++..+-. .
T Consensus 579 ll~~~~--------e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS 650 (978)
T KOG1993|consen 579 LLKAVE--------ECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQS 650 (978)
T ss_pred HHHHHh--------hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCC
Confidence 665432 23466777777777654322222 12333444444444443211 0
Q ss_pred ccccccccccCCCHHHHHHHHHHhcccCCCCCCCC-CCCCccccccc-cCCcccCCCC-------CC---CCCCCCCCCC
Q 000326 291 SANSAVPPALSRPAEQIFEIVNLANELLPPLPQGT-ISLPSSSNMFV-KGPVVRKSPA-------SS---SGKQDDTNGN 358 (1661)
Q Consensus 291 ~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~-~~~~~~~~~~~-~g~~~~~~~~-------~~---~~~~~~~~~~ 358 (1661)
.. ...-++-||.+-.+.= =|+.+ +.-+.+.-|.. -+...+-.|. .. +.+.+ +=.
T Consensus 651 ~~----------~~~fL~pVIel~~D~~--sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll~L~p~l~~~iE~ste--~L~ 716 (978)
T KOG1993|consen 651 FE----------FYPFLYPVIELSTDPS--SPEHVYLLEDGMELWLTTLMNSQKLTPELLLLFPHLLYIIEQSTE--NLP 716 (978)
T ss_pred cc----------chHHHHHHHHHhcCCC--CCceeehhhhHHHHHHHHHhcccccCHHHHHHHHHHHHHHHhhhh--hHH
Confidence 00 0111122222111100 00000 00000000000 0000000000 00 00000 000
Q ss_pred cchhhhHHHhhccCHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHhhcCCH--HHHHHHhhhcchHHHHHHHh
Q 000326 359 ASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSA--EMIQSLLSVTNISSFLAGVL 436 (1661)
Q Consensus 359 ~~~~~~r~~~~~~~~e~~~~f~~~l~p~Li~vy~ss~~~~VR~~~L~~i~r~v~~~~~--~~L~~~l~~~~~ss~la~il 436 (1661)
.-...-.--.+-++++.++.+...++..+.+.+. .||.+-+.+++|++..+-. +.|...+-...++-.+-+|.
T Consensus 717 t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~-----dvr~egl~avLkiveili~t~~il~~~~~~~~L~~lf~~I~ 791 (978)
T KOG1993|consen 717 TVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLD-----DVRNEGLQAVLKIVEILIKTNPILGSLLFSPLLSRLFLSIA 791 (978)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHhhhHHHHhhhcchhhHHHHHHHH
Confidence 0011112223456778778887788777777664 5999999999999976422 23333333334444444443
Q ss_pred h-cCCCchHHhHHHHHHHHHhhCchhhhhhHHhhc
Q 000326 437 A-WKDPHVLIPSLQIAEILMEKLPGTFSKMFVREG 470 (1661)
Q Consensus 437 ~-~~d~~l~~~aL~i~~~Ll~K~pd~f~~~f~REG 470 (1661)
. .+-|.+...-|+++--..-..|++|...+..--
T Consensus 792 ~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~ 826 (978)
T KOG1993|consen 792 ENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKN 826 (978)
T ss_pred hCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhh
Confidence 2 333555555677776666777888877665544
No 206
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=73.68 E-value=19 Score=47.04 Aligned_cols=135 Identities=16% Similarity=0.151 Sum_probs=98.6
Q ss_pred ccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccC
Q 000326 52 FSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEH 131 (1661)
Q Consensus 52 ~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~ 131 (1661)
...+.++|.|..-+++. +..+|..+...+...++..+ -.+|..-++|.|-+--+......++..|+-|++.++...
T Consensus 385 ~~~~~IlplL~~S~~~~-~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l 460 (700)
T KOG2137|consen 385 EVKEKILPLLYRSLEDS-DVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL 460 (700)
T ss_pred HHHHHHHHHHHHHhcCc-chhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH
Confidence 34556788888888876 48999999999999998665 346667788988855566788999999999999999443
Q ss_pred cc-hhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccC
Q 000326 132 PT-ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYH 192 (1661)
Q Consensus 132 ~~-~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~ 192 (1661)
.. .|++. +.+++....+.++.+.-..+.+..++.-..+.........++|.+..+...+
T Consensus 461 D~~~v~d~--~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 461 DKAAVLDE--LLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred HHHHhHHH--HHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcc
Confidence 33 34432 4555555556678888888888888877655433345678999888876544
No 207
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=73.63 E-value=29 Score=43.96 Aligned_cols=157 Identities=18% Similarity=0.198 Sum_probs=109.6
Q ss_pred cchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCccc-ccccccCcHHHHHHhhcCCC---CHHHHHHHHHHHHHhhc
Q 000326 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESL-STFSVDSFAPVLVGLLNHES---NPDIMLLAARALTHLCD 86 (1661)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l-~~~~~~g~vp~Lv~lL~~~~---~~eiq~~A~raL~NLa~ 86 (1661)
+-...++.+-+.+. ++..|++|+.+|. +++..+++ ..|+....+..|..+..+.. +.++...+.+++..+++
T Consensus 82 ~~~a~~i~e~l~~~-~~~~~~~a~k~l~---sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elme 157 (713)
T KOG2999|consen 82 SHYAKRIMEILTEG-NNISKMEALKELD---SLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELME 157 (713)
T ss_pred hHHHHHHHHHHhCC-CcHHHHHHHHHHh---hccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHh
Confidence 44567788888886 7788888888875 44445555 57888888888888887654 35666678888888887
Q ss_pred cCCcchhhhcccccHHHHHHHHhcCC--cHHHHHHHHHHHHHhhccCcc---hhhhcCchHHHHhhhccCChHHHHHHHH
Q 000326 87 VLPSSCAAVVHYGAVTCFVARLLTIE--YMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYLDFFSTGVQRVALS 161 (1661)
Q Consensus 87 ~~p~~~~~vV~~GaVp~Lv~kLL~~~--~~dl~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lLd~~~~~vqr~Al~ 161 (1661)
..--.+..+-+.+++...+ +.... +..+-..|+..|+++--.... .|.++--+..++..|.-.+..+|..|+.
T Consensus 158 hgvvsW~~~~~~fV~~~a~--~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aia 235 (713)
T KOG2999|consen 158 HGVVSWESVSNDFVVSMAS--YVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIA 235 (713)
T ss_pred hceeeeeecccHHHHHHHH--HHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHH
Confidence 6543444444444433332 32322 345677899999998665552 5778888999999999888899999888
Q ss_pred HHHHhccCCCCc
Q 000326 162 TAANMCKKLPSD 173 (1661)
Q Consensus 162 aLsNlc~~~~~~ 173 (1661)
.+..+.++.+..
T Consensus 236 l~nal~~~a~~~ 247 (713)
T KOG2999|consen 236 LLNALFRKAPDD 247 (713)
T ss_pred HHHHHHhhCChH
Confidence 877777665443
No 208
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=72.48 E-value=15 Score=36.23 Aligned_cols=69 Identities=19% Similarity=0.115 Sum_probs=57.9
Q ss_pred hHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhh
Q 000326 141 LMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEA 210 (1661)
Q Consensus 141 L~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~ 210 (1661)
+...+..|....+.++-.++..+.++..... .....+..++..+...|.++|+-|--+|..+|+.|++.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~ 73 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADR 73 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 4556777777778899999999999998665 33445677889999999999999999999999999997
No 209
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=72.23 E-value=33 Score=46.17 Aligned_cols=119 Identities=18% Similarity=0.194 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhccCCCCc-----hhHHHhCcHHHHHHhhc-cCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHH
Q 000326 156 QRVALSTAANMCKKLPSD-----AADFVMEAVPLLTNLLQ-YHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQ 229 (1661)
Q Consensus 156 qr~Al~aLsNlc~~~~~~-----~~~~v~~~lp~L~~lL~-~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~ 229 (1661)
...++.++.|+....|.- .....-+-+|.+..+|. +.++++..-|+..+..++. +.+.+..+.+.|++..
T Consensus 1742 v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta----n~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1742 VLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA----NKECVTDLATCNVLTT 1817 (2235)
T ss_pred HHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc----ccHHHHHHHhhhHHHH
Confidence 345889999999877621 11233456677777765 5789999999999988887 7889999999999999
Q ss_pred HHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCC
Q 000326 230 AATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSG 289 (1661)
Q Consensus 230 Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~ 289 (1661)
|..+|.+. ++....++.+|..+++ ++++...-++.|.+..|..++....
T Consensus 1818 LL~lLHS~----------PS~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c~~~ 1866 (2235)
T KOG1789|consen 1818 LLTLLHSQ----------PSMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILCLTN 1866 (2235)
T ss_pred HHHHHhcC----------hHHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHhccC
Confidence 99999764 5577888888888875 4778888899999888888887543
No 210
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=70.40 E-value=2.3e+02 Score=35.81 Aligned_cols=127 Identities=17% Similarity=0.222 Sum_probs=91.0
Q ss_pred HHhcCCcHHHHHHHHHHHHHhhccCc------chhhhcCchHHHHhhhcc------CChHH-HHHHHHHHHHhccCCCCc
Q 000326 107 RLLTIEYMDLAEQSLQALKKISQEHP------TACLRAGALMAVLSYLDF------FSTGV-QRVALSTAANMCKKLPSD 173 (1661)
Q Consensus 107 kLL~~~~~dl~Eqal~aL~nIS~~~~------~~Il~~GgL~~LL~lLd~------~~~~v-qr~Al~aLsNlc~~~~~~ 173 (1661)
+|+......=+-.|+-...+...... +.|.++=|..-+=.+|.. ...++ ...++.+++-.|+..+-.
T Consensus 18 ~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElA 97 (698)
T KOG2611|consen 18 KLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELA 97 (698)
T ss_pred HHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhc
Confidence 66666666666666666667665433 247777777766666642 12344 445788888899876655
Q ss_pred hhHHHhCcHHHHHHhhccC-CHH------HHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccC
Q 000326 174 AADFVMEAVPLLTNLLQYH-DAK------VLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTS 237 (1661)
Q Consensus 174 ~~~~v~~~lp~L~~lL~~~-D~~------v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~ 237 (1661)
.-..+-+.||+|..++... |++ +++++..||..++. .+--...++..|.++.+.++-.-.
T Consensus 98 sh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~----~e~G~~~Lia~G~~~~~~Q~y~~~ 164 (698)
T KOG2611|consen 98 SHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVAT----AEAGLMTLIASGGLRVIAQMYELP 164 (698)
T ss_pred cCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhc----CCchhHHHHhcCchHHHHHHHhCC
Confidence 5566778899999998654 444 89999999998887 677888999999999999876544
No 211
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=69.75 E-value=1.9e+02 Score=33.99 Aligned_cols=67 Identities=24% Similarity=0.314 Sum_probs=51.4
Q ss_pred ccccccCcHHHHHHhhcCCC-CHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhh
Q 000326 50 STFSVDSFAPVLVGLLNHES-NPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKIS 128 (1661)
Q Consensus 50 ~~~~~~g~vp~Lv~lL~~~~-~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS 128 (1661)
........||.|+..|.+++ .|-+..+|+.||.++. .+ ..++.|- |+.+-++..|+|.|.-||..|-
T Consensus 61 gQ~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~--~~---------~~~~~l~-k~~~dp~~~v~ETc~lAi~rle 128 (289)
T KOG0567|consen 61 GQMQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG--DP---------ESLEILT-KYIKDPCKEVRETCELAIKRLE 128 (289)
T ss_pred hhhccchhhHHHHHHhcccccchHHHHHHHHHHHhhc--ch---------hhHHHHH-HHhcCCccccchHHHHHHHHHH
Confidence 44555668999999998764 3555669999999986 22 3456666 8888889999999998888873
No 212
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=67.55 E-value=2.6e+02 Score=37.93 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=44.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHH
Q 000326 203 CLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPL 267 (1661)
Q Consensus 203 aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~ 267 (1661)
++.++++. .++....+++.|.+..+...+..-+ ..+.+..++..+++++...+.
T Consensus 494 ~l~~~t~~---~~~~C~~~l~~~g~~~~~~~l~~f~--------~~~~~~~il~~l~n~~~~~~~ 547 (699)
T KOG3665|consen 494 ALWNITDE---NPETCKEFLDNGGMKLLFKCLESFD--------NEELHRKILGLLGNLAEVLEL 547 (699)
T ss_pred HHHhhhcC---CHHHHHHHHhcccHHHHHHHHhhcc--------chhHHHHHHHHHHHHHHHhhh
Confidence 45566775 8999999999999999999997543 567999999999999876533
No 213
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=66.85 E-value=70 Score=40.73 Aligned_cols=123 Identities=13% Similarity=0.141 Sum_probs=86.5
Q ss_pred cccHHHHHHHH-hcCCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhc-cCChHHHHHHHHHHHHhccCCCCchh
Q 000326 98 YGAVTCFVARL-LTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLD-FFSTGVQRVALSTAANMCKKLPSDAA 175 (1661)
Q Consensus 98 ~GaVp~Lv~kL-L~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd-~~~~~vqr~Al~aLsNlc~~~~~~~~ 175 (1661)
.|+|..|+ .. .+-.+.|++..|+-||+.+|.+..+.+ ...+++|. +.+.++.--.+.++.=.|.+...
T Consensus 550 ~~vv~~lL-h~avsD~nDDVrRAAViAlGfvc~~D~~~l------v~tvelLs~shN~hVR~g~AvaLGiacag~G~--- 619 (926)
T COG5116 550 LGVVSTLL-HYAVSDGNDDVRRAAVIALGFVCCDDRDLL------VGTVELLSESHNFHVRAGVAVALGIACAGTGD--- 619 (926)
T ss_pred chhHhhhh-eeecccCchHHHHHHHHheeeeEecCcchh------hHHHHHhhhccchhhhhhhHHHhhhhhcCCcc---
Confidence 46777777 44 555679999999999999998887543 44566664 56777777777777777876532
Q ss_pred HHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccC
Q 000326 176 DFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTS 237 (1661)
Q Consensus 176 ~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~ 237 (1661)
+-++.+|..|...+..-|.+.||.+++-|... ++++.-..+. ++.+++.+++...
T Consensus 620 ---~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q--~n~~Lnp~v~--~I~k~f~~vI~~K 674 (926)
T COG5116 620 ---KVATDILEALMYDTNDFVRQSAMIAVGMILMQ--CNPELNPNVK--RIIKKFNRVIVDK 674 (926)
T ss_pred ---HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhh--cCcccChhHH--HHHHHHHHHHhhh
Confidence 23577788888888889999999999998875 3333322222 4566666666543
No 214
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.75 E-value=2.5e+02 Score=35.24 Aligned_cols=218 Identities=14% Similarity=0.124 Sum_probs=133.1
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhc---C--CC---cccccccccCcHHHHHHhhcC--CC---CHHHHHHHH
Q 000326 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSI---G--TE---ESLSTFSVDSFAPVLVGLLNH--ES---NPDIMLLAA 78 (1661)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~---~--~~---~~l~~~~~~g~vp~Lv~lL~~--~~---~~eiq~~A~ 78 (1661)
..++.|+..|..+ +.++....+.=|.++--. . .+ -.+..++..++++.||+.+.- +. ...-...+.
T Consensus 125 n~V~slL~LLgHe-NtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L 203 (536)
T KOG2734|consen 125 NAVQSLLELLGHE-NTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTL 203 (536)
T ss_pred ccHHHHHHHhcCC-CchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHH
Confidence 3567788888765 656655544444333221 1 11 123567777889999988752 21 223344566
Q ss_pred HHHHHhhccCCcchhhhcccccHHHHHHHHhcC-CcHHHHHHHHHHHHHhhccCcc---hhhhcCchHHHHhhhccC---
Q 000326 79 RALTHLCDVLPSSCAAVVHYGAVTCFVARLLTI-EYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYLDFF--- 151 (1661)
Q Consensus 79 raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~-~~~dl~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lLd~~--- 151 (1661)
..+-|+.+..++.+..++++|.+.-|+.++-.- ....-...|...|.-|-.++.. ..-.-.|+..+|+-|.-+
T Consensus 204 ~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~ 283 (536)
T KOG2734|consen 204 AVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRH 283 (536)
T ss_pred HHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhcc
Confidence 788999999999999999999888887555444 4455566777788777776663 344567888888887521
Q ss_pred C------hHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHh-hccCCHHHHHHHHHHHHHHHhhcCCCH--HHHHHHH
Q 000326 152 S------TGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNL-LQYHDAKVLEHASVCLTRIAEAFASSP--DKLDELC 222 (1661)
Q Consensus 152 ~------~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~l-L~~~D~~v~e~A~~aLs~L~~~~~~~~--e~~~~li 222 (1661)
+ ..+-.+...++|-+.........-...+.+. |.++ ++. .....-.|+.+|-++..| .+ .+...++
T Consensus 284 dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlq-Lm~Lmlr~-Kk~sr~SalkvLd~am~g---~~gt~~C~kfV 358 (536)
T KOG2734|consen 284 DPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQ-LMNLMLRE-KKVSRGSALKVLDHAMFG---PEGTPNCNKFV 358 (536)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHH-HHHHHHHH-HHHhhhhHHHHHHHHHhC---CCchHHHHHHH
Confidence 1 2344455555554443322222222334444 3444 443 555666788888888876 43 6677777
Q ss_pred hCCcHHHHHHhhc
Q 000326 223 NHGLVTQAATLIS 235 (1661)
Q Consensus 223 ~~gll~~Lv~LL~ 235 (1661)
+...+..+..+..
T Consensus 359 e~lGLrtiF~~FM 371 (536)
T KOG2734|consen 359 EILGLRTIFPLFM 371 (536)
T ss_pred HHHhHHHHHHHHh
Confidence 7766666665554
No 215
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=66.04 E-value=2.3e+02 Score=36.12 Aligned_cols=282 Identities=15% Similarity=0.197 Sum_probs=140.3
Q ss_pred cHHHHHHhhcC---CCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc
Q 000326 57 FAPVLVGLLNH---ESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT 133 (1661)
Q Consensus 57 ~vp~Lv~lL~~---~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~ 133 (1661)
++..|..++.. .+|.-+|..-.|+|..+-+. +.|... .+..+-+..|.-+|.+..+
T Consensus 27 ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~------------~~p~~~---------~il~~L~~il~~v~kNPsn 85 (435)
T PF03378_consen 27 LLQNLFALIEKPGSAENEYLMKCIMRVLSVLQED------------ILPIAV---------EILQHLTAILKEVSKNPSN 85 (435)
T ss_dssp HHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTT------------TGGGHH---------HHHHHHHHHHHHHHTS---
T ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHH------------HHHHHH---------HHHHHHHHHHHHHHhCCCC
Confidence 55666666654 34566776666665544332 222211 2222334455666666555
Q ss_pred hhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCC
Q 000326 134 ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFAS 213 (1661)
Q Consensus 134 ~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~ 213 (1661)
....+...+ ....++.+.|...+..-......++|.+..+|+.+=.+.+-.+...|+.|.+.
T Consensus 86 P~FnHylFE---------------si~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~--- 147 (435)
T PF03378_consen 86 PRFNHYLFE---------------SIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLEL--- 147 (435)
T ss_dssp HHHHHHHHH---------------HHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHH---
T ss_pred cchhhhHHH---------------HHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---
Confidence 433332222 12222334444322211234556899999999988889999999999999996
Q ss_pred CH-HHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHc----CChHHHHHhhcCC
Q 000326 214 SP-DKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHL----GISGILKDILSGS 288 (1661)
Q Consensus 214 ~~-e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~t~~Ll~~----gil~~L~~LL~~~ 288 (1661)
.+ ..+.. ....|...|.... -|- ....+-+++|.|..+....+... ... +++.++.+|+.+.
T Consensus 148 ~~~~~~p~-----~y~~L~~~Ll~p~---lWe--~~gniPalvrLL~a~i~k~~~~i---~~~~~l~~iLgvFQkLi~sk 214 (435)
T PF03378_consen 148 RPSSPLPD-----AYKQLFPPLLSPA---LWE--RRGNIPALVRLLQAYIKKDPSFI---VANNQLEPILGVFQKLIASK 214 (435)
T ss_dssp SS--S--T-----TTGGGHHHHTSGG---GGG--STTTHHHHHHHHHHHHHHHGGG-------S-CHHHHHHHHHHHT-T
T ss_pred CCCCCCcH-----HHHHHHHHHcCcc---hhc--cCCCcCcHHHHHHHHHHhCchhh---cchhhHHHHHHHHHHHHCCC
Confidence 22 11111 1112222222211 010 11234566677776655433322 222 3344444555432
Q ss_pred CcccccccccccCCCHHHHHHHHHHhcccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCcchhhhHHHh
Q 000326 289 GVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKL 368 (1661)
Q Consensus 289 ~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 368 (1661)
. +..+=.++++-|-.-+
T Consensus 215 ~-------------~D~~gF~LL~~iv~~~-------------------------------------------------- 231 (435)
T PF03378_consen 215 A-------------NDHYGFDLLESIVENL-------------------------------------------------- 231 (435)
T ss_dssp T-------------CHHHHHHHHHHHHHHS--------------------------------------------------
T ss_pred C-------------cchHHHHHHHHHHHHC--------------------------------------------------
Confidence 2 1112222232111111
Q ss_pred hccCHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHhhcCCHHHHHHHhhh---cchHHHHHHHhh--cC----
Q 000326 369 LSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSV---TNISSFLAGVLA--WK---- 439 (1661)
Q Consensus 369 ~~~~~e~~~~f~~~l~p~Li~vy~ss~~~~VR~~~L~~i~r~v~~~~~~~L~~~l~~---~~~ss~la~il~--~~---- 439 (1661)
.++.+..|++.++-+|+.-.+++-....++.++..+.-.+..-.++.+.+++.. ..+..++..+.- .+
T Consensus 232 ---p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~ 308 (435)
T PF03378_consen 232 ---PPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSG 308 (435)
T ss_dssp ----HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--S
T ss_pred ---CHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCC
Confidence 234567788899999999998888888888888888877777788888887665 334444444321 11
Q ss_pred CCchHHhHHHHHHHHHh
Q 000326 440 DPHVLIPSLQIAEILME 456 (1661)
Q Consensus 440 d~~l~~~aL~i~~~Ll~ 456 (1661)
...--+.++-++.+|++
T Consensus 309 ~~erKi~~vGltkLL~e 325 (435)
T PF03378_consen 309 PIERKICAVGLTKLLCE 325 (435)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred cchhhHHHHHHHHHHhc
Confidence 12334456777887875
No 216
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=65.87 E-value=1.3e+02 Score=35.43 Aligned_cols=151 Identities=16% Similarity=0.216 Sum_probs=80.0
Q ss_pred cCcHHHHHHhhcCCC----------CHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHH
Q 000326 55 DSFAPVLVGLLNHES----------NPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQAL 124 (1661)
Q Consensus 55 ~g~vp~Lv~lL~~~~----------~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL 124 (1661)
..++|.|+.+|.... +......|+..|+-+ -+.-+.|.|+ +|+..+.. .+
T Consensus 30 e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~-----------re~~A~~~li-~l~~~~~~--------~~ 89 (249)
T PF06685_consen 30 EEITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQF-----------REERALPPLI-RLFSQDDD--------FL 89 (249)
T ss_pred HHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHH-----------hhhhhHHHHH-HHHcCCcc--------hH
Confidence 346888888886411 112233444444333 2334889999 78766553 23
Q ss_pred HHhhccCcc-------hhhhcCchHHHHhhhccCC--hHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHH
Q 000326 125 KKISQEHPT-------ACLRAGALMAVLSYLDFFS--TGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAK 195 (1661)
Q Consensus 125 ~nIS~~~~~-------~Il~~GgL~~LL~lLd~~~--~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~ 195 (1661)
..+.+|... +.+-.|-+..|..++.... .-+...|+.++.-+....+...-..++-.-..+...+..++..
T Consensus 90 ~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~ 169 (249)
T PF06685_consen 90 EDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPSF 169 (249)
T ss_pred HHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCchH
Confidence 333333221 3444688888999987654 3456667888888887665555444443444444446555444
Q ss_pred HHHHHHHHHHHHHhhcC-CCHHHHHHHHhCCcHH
Q 000326 196 VLEHASVCLTRIAEAFA-SSPDKLDELCNHGLVT 228 (1661)
Q Consensus 196 v~e~A~~aLs~L~~~~~-~~~e~~~~li~~gll~ 228 (1661)
+.-. .++.+++-.. .--..+..+++.|+|+
T Consensus 170 ~~~~---Lv~~~~dL~~~EL~~~I~~~f~~~lVd 200 (249)
T PF06685_consen 170 LWGS---LVADICDLYPEELLPEIRKAFEDGLVD 200 (249)
T ss_pred HHHH---HHHHHHhcCHHHhHHHHHHHHHcCCCC
Confidence 2222 1344554300 0112345555666663
No 217
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=65.59 E-value=42 Score=38.72 Aligned_cols=110 Identities=10% Similarity=0.064 Sum_probs=81.5
Q ss_pred hcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch------hh-
Q 000326 22 RADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC------AA- 94 (1661)
Q Consensus 22 ~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~------~~- 94 (1661)
++...+++++.++-.+..++...+...+..+...++||-++++|..+. ..-+..|+.++..|......-. +.
T Consensus 134 ~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GS-elSKtvA~fIlqKIlldD~GL~YiCqt~eRF 212 (293)
T KOG3036|consen 134 KSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGS-ELSKTVATFILQKILLDDVGLYYICQTAERF 212 (293)
T ss_pred cCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhccc-HHHHHHHHHHHHHHhhccccHHHHHHhHHHH
Confidence 344588999999999999999887777778889999999999998774 6778899998887775432110 00
Q ss_pred hcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCc
Q 000326 95 VVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHP 132 (1661)
Q Consensus 95 vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~ 132 (1661)
-.-.-.+..++..|.+.++..+...++++.-+++.+..
T Consensus 213 ~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpr 250 (293)
T KOG3036|consen 213 SAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPR 250 (293)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHH
Confidence 00112445556677788888888899999988886543
No 218
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=65.54 E-value=21 Score=39.41 Aligned_cols=59 Identities=14% Similarity=0.175 Sum_probs=47.1
Q ss_pred cCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHh-CCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHh
Q 000326 191 YHDAKVLEHASVCLTRIAEAFASSPDKLDELCN-HGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCA 262 (1661)
Q Consensus 191 ~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~-~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLa 262 (1661)
..|..+...++.||-.|.. +..-++.+++ .+++..|+..|.+. +..+...++.+|+.+|
T Consensus 127 ~~~~~~~~~~l~Clkal~n----~~~G~~~v~~~~~~v~~i~~~L~s~---------~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 127 EEDIDIEHECLRCLKALMN----TKYGLEAVLSHPDSVNLIALSLDSP---------NIKTRKLALEILAALC 186 (187)
T ss_dssp TTCHHHHHHHHHHHHHHTS----SHHHHHHHHCSSSHHHHHHHT--TT---------SHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHc----cHHHHHHHHcCcHHHHHHHHHHCCC---------CHHHHHHHHHHHHHHH
Confidence 4577888889999988888 5666777775 58999999999765 6789999999999987
No 219
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=65.47 E-value=45 Score=44.24 Aligned_cols=187 Identities=14% Similarity=0.086 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHH-HHhhccCc---chhhhcCchHHHHhh
Q 000326 72 DIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQAL-KKISQEHP---TACLRAGALMAVLSY 147 (1661)
Q Consensus 72 eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL-~nIS~~~~---~~Il~~GgL~~LL~l 147 (1661)
++-..|..+-..+..-.+.+...++...+ ..++.......+.-+.++.-|+. +.++.... ..+++.||..+|+.+
T Consensus 434 el~~la~~a~qev~~~~~~n~~~v~~~r~-rk~~~~~~~~~~~svakt~~~~~~E~~aA~~K~~~~~~Ik~~~~~aLlrl 512 (748)
T KOG4151|consen 434 ELFDLAAFAFQEVAALSPLNWGNVHMSRA-RKRLSLDEDPSCESVAKTVSWAKNEYLAAKEKYERAKKIKPGGYEALLRL 512 (748)
T ss_pred HHHHHHHHHHhhhhhccccccchHHHHHH-HHhhccCcchhhhHHHHHHHHHHHHHHhhhhHHhcCccccccHHHHHHHH
Confidence 33334455555555555555555554332 22221333334567777777755 56663322 269999999999999
Q ss_pred hccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHH--HHHHHHHHHHHhhcCCCHHHHHHHHhCC
Q 000326 148 LDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVL--EHASVCLTRIAEAFASSPDKLDELCNHG 225 (1661)
Q Consensus 148 Ld~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~--e~A~~aLs~L~~~~~~~~e~~~~li~~g 225 (1661)
..+........+..+|.- ..+.+ .....++++.+.+.++.. .+.. -.++.++.||+.. +....+.++..-
T Consensus 513 ~~~q~e~akl~~~~aL~~---~i~f~-~~~~~~v~~~~~s~~~~d-~~~~en~E~L~altnLas~---s~s~r~~i~ke~ 584 (748)
T KOG4151|consen 513 GQQQFEEAKLKWYHALAG---KIDFP-GERSYEVVKPLDSALHND-EKGLENFEALEALTNLASI---SESDRQKILKEK 584 (748)
T ss_pred HHHhchHHHHHHHHHHhh---hcCCC-CCchhhhhhhhcchhhhh-HHHHHHHHHHHHhhcccCc---chhhHHHHHHHh
Confidence 988777888887777771 22111 122456777777766543 3333 3577888888874 777777788877
Q ss_pred cHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 000326 226 LVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLG 276 (1661)
Q Consensus 226 ll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~t~~Ll~~g 276 (1661)
.++.+-+++... .+..+..++.++.||.-+..-....+.+.+
T Consensus 585 ~~~~ie~~~~ee---------~~~lqraa~e~~~NLl~~~~~~e~si~e~~ 626 (748)
T KOG4151|consen 585 ALGKIEELMTEE---------NPALQRAALESIINLLWSPLLYERSIVEYK 626 (748)
T ss_pred cchhhHHHhhcc---------cHHHHHHHHHHHHHHHhhHHHHHHHhhccc
Confidence 777777777665 577999999999999998777777777743
No 220
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=65.18 E-value=4.6e+02 Score=34.98 Aligned_cols=62 Identities=16% Similarity=0.271 Sum_probs=45.0
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHH
Q 000326 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALT 82 (1661)
Q Consensus 14 l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~ 82 (1661)
.+.|+..|... .|.++.+|+-+||++=-+..++ .+ .++..|+.+++.+.++|+...|.-+|.
T Consensus 128 ~e~l~~Rl~Dr-ep~VRiqAv~aLsrlQ~d~~de---e~---~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 128 NEKLLIRLKDR-EPNVRIQAVLALSRLQGDPKDE---EC---PVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred HHHHHHHHhcc-CchHHHHHHHHHHHHhcCCCCC---cc---cHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 34555566665 8999999999999876554443 23 347888899998888999987654443
No 221
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=64.09 E-value=3.8e+02 Score=35.35 Aligned_cols=147 Identities=16% Similarity=0.201 Sum_probs=85.7
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcc------cccc-cccCcHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 000326 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEES------LSTF-SVDSFAPVLVGLLNHESNPDIMLLAARALTHL 84 (1661)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~------l~~~-~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NL 84 (1661)
+.++-+|+.++.. |+++|-.||..|++.+..++... ++.+ |.-+.+..+.+-+. .++.+...|-+|.-|
T Consensus 48 ~dLellVervqdp-d~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrphy~~Lk~i~~~~~---~~n~Kk~laDIlSvL 123 (878)
T KOG2005|consen 48 GDLELLVERVQDP-DPDLQKAALESLREEIRSSTSSMTSVPKPLKFLRPHYGVLKEIYESMA---DSNLKKWLADILSVL 123 (878)
T ss_pred hhHHHHHHHhcCC-ChHHHHHHHHHHHHHHHhcccccccCCchhhhhccchhHHHHHHHhcc---CchhHhHHHHHHHHH
Confidence 4678899999887 99999999999999998775421 2211 12223333333332 467777888888887
Q ss_pred hccCCcchhhh--------cccc-----cHHHHHHHH------hcC---CcHHHHHHHHHHHHHhhccCcc-----hhhh
Q 000326 85 CDVLPSSCAAV--------VHYG-----AVTCFVARL------LTI---EYMDLAEQSLQALKKISQEHPT-----ACLR 137 (1661)
Q Consensus 85 a~~~p~~~~~v--------V~~G-----aVp~Lv~kL------L~~---~~~dl~Eqal~aL~nIS~~~~~-----~Il~ 137 (1661)
|-...+....+ .+-| -|..|...+ -+. ...++.+-+..+.-..-.++.. ..++
T Consensus 124 amt~se~~~~l~YRl~G~~~d~~~WGHeYVRhLageIaee~~~~~~e~~~~~dl~~l~~~iV~f~mkHNAE~eAiDlL~E 203 (878)
T KOG2005|consen 124 AMTMSERGEHLAYRLLGSIIDLGSWGHEYVRHLAGEIAEEYNNREMEAPSKADLLDLVQEIVPFHMKHNAEFEAIDLLME 203 (878)
T ss_pred heeecccchheeeeeccccCChhhhHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 75444333321 0100 122222111 011 1245555555555554444442 4778
Q ss_pred cCchHHHHhhhccCChHHHHHHHHHHH
Q 000326 138 AGALMAVLSYLDFFSTGVQRVALSTAA 164 (1661)
Q Consensus 138 ~GgL~~LL~lLd~~~~~vqr~Al~aLs 164 (1661)
-++|..++.+.| ....||.|+...+
T Consensus 204 ve~id~l~~~Vd--~~n~~RvclYl~s 228 (878)
T KOG2005|consen 204 VEGIDLLLDYVD--EHNYQRVCLYLTS 228 (878)
T ss_pred hhhHhHHHHHhh--hhhHHHHHHHHHH
Confidence 899999999988 3456777766554
No 222
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=63.65 E-value=40 Score=36.87 Aligned_cols=95 Identities=17% Similarity=0.272 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHhhcCCH--HHHHHHhhhcchHHHHHHHhhcCC-CchHHhHHH
Q 000326 373 PELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSA--EMIQSLLSVTNISSFLAGVLAWKD-PHVLIPSLQ 449 (1661)
Q Consensus 373 ~e~~~~f~~~l~p~Li~vy~ss~~~~VR~~~L~~i~r~v~~~~~--~~L~~~l~~~~~ss~la~il~~~d-~~l~~~aL~ 449 (1661)
+|.+.+-....+..|+.+.+......++..++.++.+|+.++.. +..+++.. ..+..|+..++.--+ ......+|.
T Consensus 58 ~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~t-p~l~~~i~~ll~l~~~~~~~~~~l~ 136 (165)
T PF08167_consen 58 WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIAT-PNLPKFIQSLLQLLQDSSCPETALD 136 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhh-ccHHHHHHHHHHHHhccccHHHHHH
Confidence 77776667788888999999999999999999999999988654 55566654 448888888876433 678888999
Q ss_pred HHHHHHhhCchhhhhhHHh
Q 000326 450 IAEILMEKLPGTFSKMFVR 468 (1661)
Q Consensus 450 i~~~Ll~K~pd~f~~~f~R 468 (1661)
....||..+|-.|.++-.+
T Consensus 137 ~L~~ll~~~ptt~rp~~~k 155 (165)
T PF08167_consen 137 ALATLLPHHPTTFRPFANK 155 (165)
T ss_pred HHHHHHHHCCccccchHHH
Confidence 9999999999999887643
No 223
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.60 E-value=1.4e+02 Score=37.89 Aligned_cols=186 Identities=17% Similarity=0.109 Sum_probs=112.8
Q ss_pred ccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc
Q 000326 54 VDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT 133 (1661)
Q Consensus 54 ~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~ 133 (1661)
.....+.+++.|+.++-. ..-+||+=..|++. ..+-++.++..++++.....-.+=+.....++.....
T Consensus 179 ~sde~~~~w~qls~~~~h--~~g~trlqr~m~~~---------~~~~~~~il~q~~ss~ts~~~~~ritd~Af~ael~~~ 247 (533)
T KOG2032|consen 179 VSDEVSRRWSQLSDNDIH--RVGLTRLQRFMACV---------QDLEMGKILAQLLSSITSEKENGRITDIAFFAELKRP 247 (533)
T ss_pred hhhcccchhhhcccCccc--HHHHHHHHHHHHhh---------CCccHHHHHhhcccccchhcccchHHHHHHHHHHhCc
Confidence 344677777888754321 22445555555432 3345566665777766555544555555666654443
Q ss_pred hhh-hcCchHHHHhhhc----cCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhc-cCCHHHHHHHHHHHHHH
Q 000326 134 ACL-RAGALMAVLSYLD----FFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQ-YHDAKVLEHASVCLTRI 207 (1661)
Q Consensus 134 ~Il-~~GgL~~LL~lLd----~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~-~~D~~v~e~A~~aLs~L 207 (1661)
.++ +.|.+..++..+. ..+..+.+.|+.++.|.+.+.|....-+....+..+..-|. ..+.+|+-.+..||..+
T Consensus 248 ~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v 327 (533)
T KOG2032|consen 248 KELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMV 327 (533)
T ss_pred ccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 333 5677777777775 34567788899999999998766655555556665555544 45689999999999988
Q ss_pred HhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHh
Q 000326 208 AEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCA 262 (1661)
Q Consensus 208 ~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLa 262 (1661)
.... ....+...+ -++.-++..+.... ++.....++.+++.|+
T Consensus 328 ~~~~--~~~~l~~~~-l~ialrlR~l~~se---------~~~~R~aa~~Lfg~L~ 370 (533)
T KOG2032|consen 328 LEKA--SNDDLESYL-LNIALRLRTLFDSE---------DDKMRAAAFVLFGALA 370 (533)
T ss_pred HHhh--hhcchhhhc-hhHHHHHHHHHHhc---------ChhhhhhHHHHHHHHH
Confidence 8741 111221111 13445566666554 4556777777766654
No 224
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=63.12 E-value=1.9e+02 Score=36.59 Aligned_cols=241 Identities=10% Similarity=0.047 Sum_probs=141.1
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch
Q 000326 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC 92 (1661)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~ 92 (1661)
=+..|+..+.|. |+..+.....-|.++...-. ..+.++...+...|++++.....+.-..+..+.|+.|..|..-..
T Consensus 134 fi~~Ll~l~~S~-D~rER~~lk~~l~~iy~k~~--~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~pl 210 (409)
T PF01603_consen 134 FIKKLLELFDSP-DPRERDYLKTILHRIYGKFP--NLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPL 210 (409)
T ss_dssp HHHHHHHTTTSS-THHHHHHHHHHHHHHHHH-T--TTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS-
T ss_pred HHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCC
Confidence 467788888997 99888777777777666432 224566667777788887755555566678888888888643111
Q ss_pred hhhcccccHHHHHHHHhcCCc-HHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCC
Q 000326 93 AAVVHYGAVTCFVARLLTIEY-MDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLP 171 (1661)
Q Consensus 93 ~~vV~~GaVp~Lv~kLL~~~~-~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~ 171 (1661)
......=...+|+ -|..... .....|-..++..+....+... .-.+..++.+=--.++.-+-.-+.-+..++...+
T Consensus 211 k~eh~~fl~~vll-PLh~~~~~~~y~~~L~~~~~~f~~kdp~l~--~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~ 287 (409)
T PF01603_consen 211 KEEHKQFLRKVLL-PLHKSPHLSSYHQQLSYCVVQFLEKDPSLA--EPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLP 287 (409)
T ss_dssp -HHHHHHHHHTTG-GGGGSTGGGGTHHHHHHHHHHHHHH-GGGH--HHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--
T ss_pred cHHHHHHHHHHHH-HHhcCCcHHHHHHHHHHHHHHHHHhCchhH--HHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcC
Confidence 1100000112233 3444443 2224455555555554444311 1122333333333445555556777888888776
Q ss_pred CchhHHH-hCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhC---CcHHHHHHhhccCCCCCCCCCCC
Q 000326 172 SDAADFV-MEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNH---GLVTQAATLISTSNSGGGQASLS 247 (1661)
Q Consensus 172 ~~~~~~v-~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~---gll~~Lv~LL~~~~~~~~~~~~s 247 (1661)
...+..+ ..++..|...+.+..-+|.+.|+..+. + +.+-.++.. .+++.+..-|.... ....+
T Consensus 288 ~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~--------n-~~~~~li~~~~~~i~p~i~~~L~~~~----~~HWn 354 (409)
T PF01603_consen 288 PEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWN--------N-EYFLSLISQNSRVILPIIFPALYRNS----KNHWN 354 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGG--------S-HHHHHHHHCTHHHHHHHHHHHHSSTT----SS-SS
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHC--------C-HHHHHHHHhChHHHHHHHHHHHHHHH----HHHhh
Confidence 6666544 467888888899999999998885542 2 222333333 26777777765531 33467
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHH
Q 000326 248 TPTYTGLIRLLSTCASGSPLCAKTL 272 (1661)
Q Consensus 248 ~~i~~~alr~L~nLas~s~~~t~~L 272 (1661)
..++..+..++..+...++..-...
T Consensus 355 ~~Vr~~a~~vl~~l~~~d~~lf~~~ 379 (409)
T PF01603_consen 355 QTVRNLAQNVLKILMEMDPKLFDKC 379 (409)
T ss_dssp TTHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 8899999999999998888865543
No 225
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=62.51 E-value=83 Score=40.11 Aligned_cols=154 Identities=12% Similarity=0.036 Sum_probs=92.7
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch
Q 000326 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC 92 (1661)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~ 92 (1661)
....++..|..+.|+.+++.++-.+.-.-... -..++|..|+.+--++.|-++...|.-||+.+|...+
T Consensus 516 ~add~I~ell~d~ds~lRy~G~fs~alAy~GT--------gn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--- 584 (926)
T COG5116 516 MADDYINELLYDKDSILRYNGVFSLALAYVGT--------GNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--- 584 (926)
T ss_pred HHHHHHHHHhcCchHHhhhccHHHHHHHHhcC--------CcchhHhhhheeecccCchHHHHHHHHheeeeEecCc---
Confidence 34456666655557777777776664333332 2345788888874445578999999999999987654
Q ss_pred hhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhc---cCChHHHHH-HHHHHHHhcc
Q 000326 93 AAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLD---FFSTGVQRV-ALSTAANMCK 168 (1661)
Q Consensus 93 ~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd---~~~~~vqr~-Al~aLsNlc~ 168 (1661)
.+++..++-|.++.+.-++--..-+|+--|..... ..++.+|+ .......|. |+-+++-+..
T Consensus 585 ------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~--------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~ 650 (926)
T COG5116 585 ------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD--------KVATDILEALMYDTNDFVRQSAMIAVGMILM 650 (926)
T ss_pred ------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc--------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHh
Confidence 35556664566678889999999999988765543 22333332 334444454 4444444433
Q ss_pred CCCCchhHHHhCcHHHHHHhhcc
Q 000326 169 KLPSDAADFVMEAVPLLTNLLQY 191 (1661)
Q Consensus 169 ~~~~~~~~~v~~~lp~L~~lL~~ 191 (1661)
...+.-...+.++...+..++..
T Consensus 651 Q~n~~Lnp~v~~I~k~f~~vI~~ 673 (926)
T COG5116 651 QCNPELNPNVKRIIKKFNRVIVD 673 (926)
T ss_pred hcCcccChhHHHHHHHHHHHHhh
Confidence 22222223355555555555543
No 226
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=61.47 E-value=1.5e+02 Score=44.04 Aligned_cols=202 Identities=14% Similarity=0.128 Sum_probs=119.3
Q ss_pred CHHHHHHHHHHHHHHHhcC--CCcccccc-cccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHH
Q 000326 26 EEGKQVEALTQLCEMLSIG--TEESLSTF-SVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVT 102 (1661)
Q Consensus 26 D~~~ql~Al~~L~~lL~~~--~~~~l~~~-~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp 102 (1661)
+..+.+.|+..|+++...- .++ +..+ -+..++.+|..+|....+.+++....+|+.+|...... . +..|-=.
T Consensus 1150 n~~va~fAidsLrQLs~kfle~eE-L~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~---n-IkSGWkt 1224 (1780)
T PLN03076 1150 NLSIAIFAMDSLRQLSMKFLEREE-LANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN---N-VKSGWKS 1224 (1780)
T ss_pred chhHHHHHHHHHHHHHHHhcchhh-hhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh---h-hhcCcHH
Confidence 6678888888776654422 122 1222 24568999999999777899999999999999875332 2 2345433
Q ss_pred HHHHHHhc----CCcHHHHHHHHHHHHHhhccCcchhhh--cCchHHHHhhhccC-----ChHHHHHHHHHHHHhcc---
Q 000326 103 CFVARLLT----IEYMDLAEQSLQALKKISQEHPTACLR--AGALMAVLSYLDFF-----STGVQRVALSTAANMCK--- 168 (1661)
Q Consensus 103 ~Lv~kLL~----~~~~dl~Eqal~aL~nIS~~~~~~Il~--~GgL~~LL~lLd~~-----~~~vqr~Al~aLsNlc~--- 168 (1661)
+|- ++. .....+.+.|..++..|..++-..|.. .+.+.-|+..|..| ...+--.|+..+.+|+.
T Consensus 1225 IF~--VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La 1302 (1780)
T PLN03076 1225 MFM--VFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLA 1302 (1780)
T ss_pred HHH--HHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHH
Confidence 332 333 446899999999999999876654442 45555555555321 12222233333333311
Q ss_pred -C------C-C----------------C------chhHHHhCcHHHHHHh---hccCCHHHHHHHHHHHHHHHhhcCC--
Q 000326 169 -K------L-P----------------S------DAADFVMEAVPLLTNL---LQYHDAKVLEHASVCLTRIAEAFAS-- 213 (1661)
Q Consensus 169 -~------~-~----------------~------~~~~~v~~~lp~L~~l---L~~~D~~v~e~A~~aLs~L~~~~~~-- 213 (1661)
+ . . . .......--+|.|..+ ....+.+|...|+..|.++...+.+
T Consensus 1303 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~F 1382 (1780)
T PLN03076 1303 EGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLF 1382 (1780)
T ss_pred hccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccC
Confidence 0 0 0 0 0001112235555555 5667899999999999999876422
Q ss_pred CHHHHHHHHhCCcHHHHHHhhc
Q 000326 214 SPDKLDELCNHGLVTQAATLIS 235 (1661)
Q Consensus 214 ~~e~~~~li~~gll~~Lv~LL~ 235 (1661)
+++.-+.+++ +++-.|..-+.
T Consensus 1383 s~~~W~~if~-~VLFPIFd~l~ 1403 (1780)
T PLN03076 1383 SLPLWERVFE-SVLFPIFDYVR 1403 (1780)
T ss_pred CHHHHHHHHH-HHHHHHHHHHH
Confidence 3444444454 56666666654
No 227
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=61.28 E-value=1.3e+02 Score=39.60 Aligned_cols=209 Identities=14% Similarity=0.124 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHhcCCCcccccccccCcHH-HHHHhhc--CCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHH
Q 000326 30 QVEALTQLCEMLSIGTEESLSTFSVDSFAP-VLVGLLN--HESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVA 106 (1661)
Q Consensus 30 ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp-~Lv~lL~--~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~ 106 (1661)
=+-.+-+|+.-|......+.......+.|| .++.+.. -...+-.+-..|+-+.++-.-.. ...++-|..+.
T Consensus 185 D~~~Lg~li~el~ng~~~~~~~~~~~~~ipk~~~~~~~k~~~~~~~~r~n~~~~~~~~~~~~g-----ff~n~fvd~~~- 258 (690)
T KOG1243|consen 185 DSWGLGCLIEELFNGSLLTKTDLSNTGKIPKALIELYCKKLGATELKRPNKLRFILECRLLGG-----FFRNDFVDTLL- 258 (690)
T ss_pred hhhhHHHHHHHHhCcccCcchhhhccCccchhHHHHHHHHhccccccccchhhHHHHHHhccc-----cccchHHHHHH-
Confidence 344455555555544333333444555566 4444331 11112222225555555443222 22233333443
Q ss_pred HH--hcCCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHH
Q 000326 107 RL--LTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPL 184 (1661)
Q Consensus 107 kL--L~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~ 184 (1661)
.| +.+...+-+..=..-|-+....-+..|+..-.++.|+..+.+.+ .-...+.-+.-+.......+ +...++|.
T Consensus 259 fLeel~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~e--yq~~i~p~ 334 (690)
T KOG1243|consen 259 FLEELRLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEE--YQVRIIPV 334 (690)
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccc--cccchhhh
Confidence 33 33444444444555555555555667777878888888777655 22223333333333222222 56789999
Q ss_pred HHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhc
Q 000326 185 LTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCAS 263 (1661)
Q Consensus 185 L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas 263 (1661)
|+.+....|..|.-.-+.-+-..++. .-+.+++.-+++++...+..+ ++.++...++++..|+.
T Consensus 335 l~kLF~~~Dr~iR~~LL~~i~~~i~~------Lt~~~~~d~I~phv~~G~~DT---------n~~Lre~Tlksm~~La~ 398 (690)
T KOG1243|consen 335 LLKLFKSPDRQIRLLLLQYIEKYIDH------LTKQILNDQIFPHVALGFLDT---------NATLREQTLKSMAVLAP 398 (690)
T ss_pred HHHHhcCcchHHHHHHHHhHHHHhhh------cCHHhhcchhHHHHHhhcccC---------CHHHHHHHHHHHHHHHh
Confidence 99999999998886555444444442 345667777899999999876 67788888888888774
No 228
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.93 E-value=1e+02 Score=41.07 Aligned_cols=142 Identities=17% Similarity=0.169 Sum_probs=99.6
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchh
Q 000326 56 SFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTAC 135 (1661)
Q Consensus 56 g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~I 135 (1661)
+.+.-|..+|+.+...+-.....-||.-+++..|+.... ++..||.-..++.+.++.-. .|.-+-.+.|...
T Consensus 391 ~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDce~~~i~~r---ILhlLG~EgP~a~ 462 (865)
T KOG1078|consen 391 VMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDCEFTQIAVR---ILHLLGKEGPKAP 462 (865)
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhccchHHHHH---HHHHHhccCCCCC
Confidence 457777888887767788888888999999988887765 45688977777777777554 4555555666554
Q ss_pred hhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHh
Q 000326 136 LRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAE 209 (1661)
Q Consensus 136 l~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~ 209 (1661)
.-..-+..+...+--.+..+...|+.+++++..+.+.. -..+.-.|.+.+...|.+|.+.|..++..+-+
T Consensus 463 ~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l----~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 463 NPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVL----LPSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred CcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCc----cccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 44444444444444445666777899999988543221 22345566677899999999999998888775
No 229
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=60.76 E-value=1.2e+02 Score=35.87 Aligned_cols=150 Identities=13% Similarity=0.073 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhhccCcchhhhcC----------chHHHHhhhccCC----hHHHHHHHHHHHHhccCCCCchhHHHhC
Q 000326 115 DLAEQSLQALKKISQEHPTACLRAG----------ALMAVLSYLDFFS----TGVQRVALSTAANMCKKLPSDAADFVME 180 (1661)
Q Consensus 115 dl~Eqal~aL~nIS~~~~~~Il~~G----------gL~~LL~lLd~~~----~~vqr~Al~aLsNlc~~~~~~~~~~v~~ 180 (1661)
...+.++..|..+..-....++..+ .++.+++-++... ....+.++..++.+|......+ +..
T Consensus 77 ~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~~---La~ 153 (262)
T PF14225_consen 77 STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLPN---LAR 153 (262)
T ss_pred CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCcc---HHH
Confidence 4556677777777665444444433 4455555555544 1344566677888886444333 223
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHH
Q 000326 181 AVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLST 260 (1661)
Q Consensus 181 ~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~n 260 (1661)
++-...+--..+-.+-+.++|.+| ++.| -|+. +..++..|+.+|.++ ...++..++++|..
T Consensus 154 il~~ya~~~fr~~~dfl~~v~~~l---~~~f--~P~~-----~~~~l~~Ll~lL~n~---------~~w~~~~~L~iL~~ 214 (262)
T PF14225_consen 154 ILSSYAKGRFRDKDDFLSQVVSYL---REAF--FPDH-----EFQILTFLLGLLENG---------PPWLRRKTLQILKV 214 (262)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHH---HHHh--Cchh-----HHHHHHHHHHHHhCC---------cHHHHHHHHHHHHH
Confidence 333333322222345555555444 4442 1111 123455788888775 46788999999998
Q ss_pred HhcCCHHHHHHHHHcCChHHHHHhhcCC
Q 000326 261 CASGSPLCAKTLLHLGISGILKDILSGS 288 (1661)
Q Consensus 261 Las~s~~~t~~Ll~~gil~~L~~LL~~~ 288 (1661)
+...-+-... +..+++..|.++|.+.
T Consensus 215 ll~~~d~~~~--~~~dlispllrlL~t~ 240 (262)
T PF14225_consen 215 LLPHVDMRSP--HGADLISPLLRLLQTD 240 (262)
T ss_pred HhccccCCCC--cchHHHHHHHHHhCCc
Confidence 8765333222 5566888888888764
No 230
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=58.44 E-value=4.6e+02 Score=35.81 Aligned_cols=129 Identities=17% Similarity=0.172 Sum_probs=86.4
Q ss_pred HHHHhhhccCChHHHHHHHHHHHHhccCC--CCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHH
Q 000326 142 MAVLSYLDFFSTGVQRVALSTAANMCKKL--PSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLD 219 (1661)
Q Consensus 142 ~~LL~lLd~~~~~vqr~Al~aLsNlc~~~--~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~ 219 (1661)
..++..+...++..-+..+.++.+++.-. +... ..+-++.-..-.+..=..+....+.+|.++++- +++.+.
T Consensus 444 ~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~---~~~~L~ 517 (727)
T PF12726_consen 444 KALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSLGQITDLISQILERLSDF---DPSHLK 517 (727)
T ss_pred HHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHH
Confidence 44455556667788888899999988722 1111 111112112222222246777788889999985 899998
Q ss_pred HHHh-CCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcC--CHHHHHHHHHcCChHHHHHhh
Q 000326 220 ELCN-HGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASG--SPLCAKTLLHLGISGILKDIL 285 (1661)
Q Consensus 220 ~li~-~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~--s~~~t~~Ll~~gil~~L~~LL 285 (1661)
.++. .+....++.+|-++ ..++...|+.+|..+... --+..+.+++.+.-.+|..+-
T Consensus 518 ~l~~d~~~~~~i~s~lfsp---------~~~l~qaA~~llk~~~d~~~R~e~i~~ll~~~~~~tL~ai~ 577 (727)
T PF12726_consen 518 ELLSDPDAAQAIWSLLFSP---------DDDLYQAAQDLLKQAFDVDGRLEAIQALLQSNFSPTLSAIN 577 (727)
T ss_pred HHHcCcchhhHHHhheeCC---------ChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhHHHHHHHHH
Confidence 8885 57999999999887 467999999999988643 356667777766555555443
No 231
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=57.53 E-value=26 Score=39.41 Aligned_cols=77 Identities=16% Similarity=0.037 Sum_probs=51.9
Q ss_pred ccHHHHHHHHhc-----CCcHHHHHHHHHHHHHhhccCcc--hhhhc--Cc--hHHHHhhhccCChHHHHHHHHHHHHhc
Q 000326 99 GAVTCFVARLLT-----IEYMDLAEQSLQALKKISQEHPT--ACLRA--GA--LMAVLSYLDFFSTGVQRVALSTAANMC 167 (1661)
Q Consensus 99 GaVp~Lv~kLL~-----~~~~dl~Eqal~aL~nIS~~~~~--~Il~~--Gg--L~~LL~lLd~~~~~vqr~Al~aLsNlc 167 (1661)
.+|..|++.+.. ....+-.......|.||++-... .+++. +. |..|+-++.+.+..-.+-++.+|-|||
T Consensus 52 ~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNcc 131 (192)
T PF04063_consen 52 FYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCC 131 (192)
T ss_pred HHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhh
Confidence 367777755555 23356677888999999986553 44432 33 677777777775555566899999999
Q ss_pred cCCCCchh
Q 000326 168 KKLPSDAA 175 (1661)
Q Consensus 168 ~~~~~~~~ 175 (1661)
.......+
T Consensus 132 Fd~~~H~~ 139 (192)
T PF04063_consen 132 FDTDSHEW 139 (192)
T ss_pred ccHhHHHH
Confidence 97654443
No 232
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=57.47 E-value=1e+02 Score=40.69 Aligned_cols=102 Identities=14% Similarity=-0.011 Sum_probs=55.2
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch
Q 000326 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC 92 (1661)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~ 92 (1661)
....+|+.|..+.||.+++.++-.+.-.-+... ..++|..|+.+--++-|.++...|.-+|+.++...|+.+
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg--------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~ 590 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTG--------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQL 590 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC--------chhhHHHhhcccccccchHHHHHHHHHheeeEecChhhc
Confidence 445555555444466666666555532222211 223455555553333456777777777777766666443
Q ss_pred hhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccC
Q 000326 93 AAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEH 131 (1661)
Q Consensus 93 ~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~ 131 (1661)
- ..++-|-++-++-|+--+.-||+--|...
T Consensus 591 ~---------s~V~lLses~N~HVRyGaA~ALGIaCAGt 620 (929)
T KOG2062|consen 591 P---------STVSLLSESYNPHVRYGAAMALGIACAGT 620 (929)
T ss_pred h---------HHHHHHhhhcChhhhhhHHHHHhhhhcCC
Confidence 3 23323445556667777777777665543
No 233
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=57.42 E-value=88 Score=36.77 Aligned_cols=196 Identities=16% Similarity=0.089 Sum_probs=113.7
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchh
Q 000326 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCA 93 (1661)
Q Consensus 14 l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~ 93 (1661)
+-..++.|.+. +......++.++..+|..--.... ....... .. .+ .+ .....
T Consensus 5 ls~~~d~L~s~-~~~~ir~GLrq~~~lL~~l~~~~~-~~~~~~~--------~~-----~~-~~-----------~~~l~ 57 (257)
T PF08045_consen 5 LSLAFDNLYSE-DTPKIRKGLRQLEGLLAQLCLSIR-QSRNSSK--------RS-----SA-AS-----------RKGLE 57 (257)
T ss_pred HHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHhhccc-ccccccc--------ch-----hh-cc-----------chhhh
Confidence 45677888887 888888999999887764211100 0000000 00 00 00 01111
Q ss_pred hhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhccC-ChHHHHHHHHHHHHhccCC-C
Q 000326 94 AVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFF-STGVQRVALSTAANMCKKL-P 171 (1661)
Q Consensus 94 ~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~-~~~vqr~Al~aLsNlc~~~-~ 171 (1661)
...+.-+++-+. +|.+.-.-.++...+.+|..|....+..-. +.. .....-.|+.+|--||--. +
T Consensus 58 ~~~~~~~~~eF~-~LQ~~Fe~Nl~~~Lv~~l~~l~~~~~~~~~------------~~~~~~~li~~aL~vLQGl~LLHp~ 124 (257)
T PF08045_consen 58 LFRDDPALREFQ-KLQEGFEWNLASRLVSWLDRLLGRGSHIDG------------DSPSNDSLIALALRVLQGLCLLHPP 124 (257)
T ss_pred hcccchhHHHHH-HhHHHhhcchhhhhHHHHHHHHhhcccccC------------cccchhHHHHHHHHHHHHHHHcCch
Confidence 122223444454 454444445556666666665443321000 111 2223445777888888744 4
Q ss_pred CchhHHHhCcHHHHHHhhc-cCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhH
Q 000326 172 SDAADFVMEAVPLLTNLLQ-YHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPT 250 (1661)
Q Consensus 172 ~~~~~~v~~~lp~L~~lL~-~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i 250 (1661)
...+-.-...+..|..+|. ...+.+...++.+|..+.-. ++.+...+-..+.+..++.++.... .+.++
T Consensus 125 Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld---~p~N~r~FE~~~Gl~~v~~llk~~~-------~~~~~ 194 (257)
T PF08045_consen 125 SRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLD---SPENQRDFEELNGLSTVCSLLKSKS-------TDREL 194 (257)
T ss_pred HHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHc---ChHHHHHHHHhCCHHHHHHHHcccc-------ccHHH
Confidence 4444445678999999995 45788888888887776664 8999999999999999999998763 24455
Q ss_pred HHHHHHHHH
Q 000326 251 YTGLIRLLS 259 (1661)
Q Consensus 251 ~~~alr~L~ 259 (1661)
...++-.|.
T Consensus 195 r~K~~EFL~ 203 (257)
T PF08045_consen 195 RLKCIEFLY 203 (257)
T ss_pred hHHHHHHHH
Confidence 555554443
No 234
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=57.08 E-value=2.3e+02 Score=33.58 Aligned_cols=182 Identities=15% Similarity=0.124 Sum_probs=93.4
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCC-CCHHHHHHHHHHHHHhhccCCcchhhhcc
Q 000326 19 SGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHE-SNPDIMLLAARALTHLCDVLPSSCAAVVH 97 (1661)
Q Consensus 19 ~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~-~~~eiq~~A~raL~NLa~~~p~~~~~vV~ 97 (1661)
..|.++ |+.++-.|+..|+++|..-....+ ...-|..|++++.+. ++......|..+|..|..... +.
T Consensus 6 ~~Ltse-d~~~R~ka~~~Ls~vL~~lp~~~L----~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~------~~ 74 (262)
T PF14500_consen 6 EYLTSE-DPIIRAKALELLSEVLERLPPDFL----SRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKN------FS 74 (262)
T ss_pred hhhCCC-CHHHHHHHHHHHHHHHHhCCHhhc----cHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcC------CC
Confidence 456776 999999999999999997654433 223355566555321 123344344555544442211 11
Q ss_pred cccHHHHHHHHhcCC-----cHHHHHHHHHHHHHhhccCcchhhh--cCchHHHHhhhcc-CChHHHHHHHHHHHHhccC
Q 000326 98 YGAVTCFVARLLTIE-----YMDLAEQSLQALKKISQEHPTACLR--AGALMAVLSYLDF-FSTGVQRVALSTAANMCKK 169 (1661)
Q Consensus 98 ~GaVp~Lv~kLL~~~-----~~dl~Eqal~aL~nIS~~~~~~Il~--~GgL~~LL~lLd~-~~~~vqr~Al~aLsNlc~~ 169 (1661)
.+.+..+++.+...- ....+-.+.+.|..+-.++...+.. ..-+..+++.++. .++.-.-.+...+..++..
T Consensus 75 ~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~ 154 (262)
T PF14500_consen 75 PESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQE 154 (262)
T ss_pred hhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 112333333333211 2345666777777776655443322 2233444444432 2332222222222221111
Q ss_pred C-----------------------CCc--------------------hhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHH
Q 000326 170 L-----------------------PSD--------------------AADFVMEAVPLLTNLLQYHDAKVLEHASVCLTR 206 (1661)
Q Consensus 170 ~-----------------------~~~--------------------~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~ 206 (1661)
- |+. .......++|.|..-|.++...+..+++.+|..
T Consensus 155 ~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~ 234 (262)
T PF14500_consen 155 FDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKA 234 (262)
T ss_pred cccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 0 100 011234567888888888888888888888887
Q ss_pred HHhhc
Q 000326 207 IAEAF 211 (1661)
Q Consensus 207 L~~~~ 211 (1661)
.+..|
T Consensus 235 c~~~y 239 (262)
T PF14500_consen 235 CIENY 239 (262)
T ss_pred HHHHC
Confidence 77764
No 235
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=57.02 E-value=1.1e+02 Score=41.59 Aligned_cols=133 Identities=18% Similarity=0.182 Sum_probs=83.3
Q ss_pred hhhcCchHHHHhhhccC-----ChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhc----cCC----HHHHHHHH
Q 000326 135 CLRAGALMAVLSYLDFF-----STGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQ----YHD----AKVLEHAS 201 (1661)
Q Consensus 135 Il~~GgL~~LL~lLd~~-----~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~----~~D----~~v~e~A~ 201 (1661)
+-+.|||..+|.+|+.. .-......+..+..||.-........-.++++.|...|. ... ..+.+..+
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 44689999999999742 234555566777767764344444444678888887764 434 68888888
Q ss_pred HHHHHHHhhcCCCHHHHHHH----HhCC-------cHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHH
Q 000326 202 VCLTRIAEAFASSPDKLDEL----CNHG-------LVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAK 270 (1661)
Q Consensus 202 ~aLs~L~~~~~~~~e~~~~l----i~~g-------ll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~t~ 270 (1661)
..+-.|.... +.+.+... ...| -+..+++.+.+. ....++.+...++|+|.+|+.|+++..+
T Consensus 193 ~IiE~ll~ea--~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~-----~~r~~~~i~~~l~RiLP~Lt~G~~e~m~ 265 (802)
T PF13764_consen 193 EIIESLLSEA--NSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSP-----FVRSNPQILQALARILPFLTYGNEEKMD 265 (802)
T ss_pred HHHHHHHHHH--hhhhhhhccccccccccccccHHHHHHHHHHhcCc-----cccCCHHHHHHHHHHhhHHhcCCHHHHH
Confidence 7777777641 11111110 0111 244444444432 1123678889999999999999999888
Q ss_pred HHHH
Q 000326 271 TLLH 274 (1661)
Q Consensus 271 ~Ll~ 274 (1661)
.|++
T Consensus 266 ~Lv~ 269 (802)
T PF13764_consen 266 ALVE 269 (802)
T ss_pred HHHH
Confidence 7766
No 236
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=56.12 E-value=1.2e+02 Score=41.05 Aligned_cols=209 Identities=13% Similarity=0.122 Sum_probs=126.3
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchh
Q 000326 56 SFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTAC 135 (1661)
Q Consensus 56 g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~I 135 (1661)
-+.|.++.+++++ .++++..-.|.+..+-..+...-...+..-.+|.+. .|..-..-.++...+|.+--++......+
T Consensus 437 ~llp~~~~~l~de-~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~-el~~d~~wRvr~ail~~ip~la~q~~~~~ 514 (759)
T KOG0211|consen 437 ELLPLLIGNLKDE-DPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIV-ELAEDLLWRVRLAILEYIPQLALQLGVEF 514 (759)
T ss_pred ccChhhhhhcchh-hHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhh-hhccchhHHHHHHHHHHHHHHHHhhhhHH
Confidence 3678888888866 489998888888777666655555566667778777 56544445566666666666665554333
Q ss_pred hhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCH
Q 000326 136 LRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSP 215 (1661)
Q Consensus 136 l~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~ 215 (1661)
+..---..|...+.+.--++.+.|+..+.-++.... ... .....+|.+.....++.-......+.++.-|+.-
T Consensus 515 ~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w-~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v----- 587 (759)
T KOG0211|consen 515 FDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEW-ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEV----- 587 (759)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cch-hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHH-----
Confidence 333333444445555556777777777777776433 222 2344566555554444333333344444444432
Q ss_pred HHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhc
Q 000326 216 DKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILS 286 (1661)
Q Consensus 216 e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~ 286 (1661)
.-+.+....+++.+.++.... .+++...+++.|-.+... ......+..+.+.+..+..
T Consensus 588 -~g~ei~~~~Llp~~~~l~~D~---------vanVR~nvak~L~~i~~~---L~~~~~~~~v~pll~~L~~ 645 (759)
T KOG0211|consen 588 -LGQEITCEDLLPVFLDLVKDP---------VANVRINVAKHLPKILKL---LDESVRDEEVLPLLETLSS 645 (759)
T ss_pred -hccHHHHHHHhHHHHHhccCC---------chhhhhhHHHHHHHHHhh---cchHHHHHHHHHHHHHhcc
Confidence 122344445678888887765 567888899988887754 2234556666666666665
No 237
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=56.12 E-value=43 Score=35.88 Aligned_cols=90 Identities=18% Similarity=0.217 Sum_probs=68.9
Q ss_pred HHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCC
Q 000326 162 TAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGG 241 (1661)
Q Consensus 162 aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~ 241 (1661)
.+..+|...... ....++++-.|...|++.++.++-.|+..|-.++.+ .......++.+.+++..|+.++...
T Consensus 20 ~il~icD~I~~~-~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkN--CG~~fh~evask~Fl~eL~kl~~~~---- 92 (144)
T cd03568 20 LILDVCDKVKSD-ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAEN--CGKRFHQEVASRDFTQELKKLINDR---- 92 (144)
T ss_pred HHHHHHHHHhcC-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH--CCHHHHHHHhhHHHHHHHHHHhccc----
Confidence 344566533222 234578999999999999999999999999999987 3445666778889999999999764
Q ss_pred CCCCCChhHHHHHHHHHHHHh
Q 000326 242 GQASLSTPTYTGLIRLLSTCA 262 (1661)
Q Consensus 242 ~~~~~s~~i~~~alr~L~nLa 262 (1661)
....++..++.+|-..+
T Consensus 93 ----~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 93 ----VHPTVKEKLREVVKQWA 109 (144)
T ss_pred ----CCHHHHHHHHHHHHHHH
Confidence 26788888888888765
No 238
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=55.85 E-value=2.3e+02 Score=37.64 Aligned_cols=124 Identities=19% Similarity=0.151 Sum_probs=85.7
Q ss_pred cccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhc-cCChHHHHHHHHHHHHhccCCCCchhH
Q 000326 98 YGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLD-FFSTGVQRVALSTAANMCKKLPSDAAD 176 (1661)
Q Consensus 98 ~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd-~~~~~vqr~Al~aLsNlc~~~~~~~~~ 176 (1661)
+++|..|+.--.+-.+.||+..|+-+|+.++-+.++. ++..+.+|. ++++++.--|+-+|.=.|.+...
T Consensus 553 nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~---- 622 (929)
T KOG2062|consen 553 NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGL---- 622 (929)
T ss_pred hhhHHHhhcccccccchHHHHHHHHHheeeEecChhh------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc----
Confidence 4577777722245567999999999999999887754 355677775 68999998899999988987643
Q ss_pred HHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccC
Q 000326 177 FVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTS 237 (1661)
Q Consensus 177 ~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~ 237 (1661)
+.++..|-.+......-|.+.||.+++-|... +++.....+ .++.+++.+++...
T Consensus 623 --~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q--~t~~~~pkv--~~frk~l~kvI~dK 677 (929)
T KOG2062|consen 623 --KEAINLLEPLTSDPVDFVRQGALIALAMIMIQ--QTEQLCPKV--NGFRKQLEKVINDK 677 (929)
T ss_pred --HHHHHHHhhhhcChHHHHHHHHHHHHHHHHHh--cccccCchH--HHHHHHHHHHhhhh
Confidence 33566677777766678889999999988774 222221111 13455566666543
No 239
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=55.50 E-value=42 Score=38.70 Aligned_cols=78 Identities=18% Similarity=0.231 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHhcCCC-ccccccc----ccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhh-hcccccH
Q 000326 28 GKQVEALTQLCEMLSIGTE-ESLSTFS----VDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAA-VVHYGAV 101 (1661)
Q Consensus 28 ~~ql~Al~~L~~lL~~~~~-~~l~~~~----~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~-vV~~GaV 101 (1661)
.-|.-|+..|||+-..++| +.+-.-+ .+.++..|+++|....++-....|.-.|.|++.+....+.. ..+.++|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 4588899999999888766 2221111 23478888888888888999999999999999988766644 4578899
Q ss_pred HHHH
Q 000326 102 TCFV 105 (1661)
Q Consensus 102 p~Lv 105 (1661)
..|+
T Consensus 219 ~~Li 222 (257)
T PF12031_consen 219 SHLI 222 (257)
T ss_pred HHHH
Confidence 9998
No 240
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=53.89 E-value=1.2e+02 Score=39.58 Aligned_cols=60 Identities=22% Similarity=0.220 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHHHHhcCCCcc-c-ccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcc
Q 000326 26 EEGKQVEALTQLCEMLSIGTEES-L-STFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDV 87 (1661)
Q Consensus 26 D~~~ql~Al~~L~~lL~~~~~~~-l-~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~ 87 (1661)
.+.++.-|+..||-++....-.. + ..---..++..|+..++. .+-.|+.++|||.|+...
T Consensus 557 p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~~--~~an~ll~vR~L~N~f~~ 618 (745)
T KOG0301|consen 557 PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILNA--DPANQLLVVRCLANLFSN 618 (745)
T ss_pred CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhccccc--chhHHHHHHHHHHHhccC
Confidence 45667777777765555432110 0 001112377777777762 478899999999999986
No 241
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=53.36 E-value=1.1e+02 Score=34.45 Aligned_cols=82 Identities=13% Similarity=0.140 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCC--c--HHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHH
Q 000326 194 AKVLEHASVCLTRIAEAFASSPDKLDELCNHG--L--VTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCA 269 (1661)
Q Consensus 194 ~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~g--l--l~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~t 269 (1661)
..-.......|+||+. .++-.+.+++.. . +.+|+-.+.+. |.--+..++.+|-|+|=..+.+
T Consensus 72 ~~~~~yla~vl~NlS~----~~~gR~~~l~~~~~~~~l~kLl~ft~~~---------s~iRR~Gva~~IrNccFd~~~H- 137 (192)
T PF04063_consen 72 KDNYDYLASVLANLSQ----LPEGRQFFLDPQRYDGPLQKLLPFTEHK---------SVIRRGGVAGTIRNCCFDTDSH- 137 (192)
T ss_pred CcchhHHHHHHHHhcC----CHHHHHHHhCchhhhhHHHHHHHHhccC---------cHHHHHHHHHHHHHhhccHhHH-
Confidence 4445566677788887 788888888663 3 67777777664 5667788999999999877776
Q ss_pred HHHHH---cCChHHHHHhhcCCC
Q 000326 270 KTLLH---LGISGILKDILSGSG 289 (1661)
Q Consensus 270 ~~Ll~---~gil~~L~~LL~~~~ 289 (1661)
..|+. .++++.|.--|.|..
T Consensus 138 ~~LL~~~~~~iLp~LLlPLaGpE 160 (192)
T PF04063_consen 138 EWLLSDDEVDILPYLLLPLAGPE 160 (192)
T ss_pred HHhcCchhhhhHHHHHhhccCCC
Confidence 44555 477787777777665
No 242
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=52.58 E-value=1.4e+02 Score=39.69 Aligned_cols=117 Identities=10% Similarity=0.034 Sum_probs=60.6
Q ss_pred chHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCH----
Q 000326 140 ALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSP---- 215 (1661)
Q Consensus 140 gL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~---- 215 (1661)
++..+.++|.+....-.+ |.+.+..+......+....+..+++.+..-.-..++.+...|+.+++.|+..+....
T Consensus 396 av~~i~~~I~~~~~~~~e-a~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~ 474 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTDDE-AAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAE 474 (618)
T ss_dssp HHHHHHHHHHTT-S-HHH-HHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHcCCCCHHH-HHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccc
Confidence 455556666654443333 555566666655445544455444443332234567788889999999998754442
Q ss_pred --HHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHh
Q 000326 216 --DKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCA 262 (1661)
Q Consensus 216 --e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLa 262 (1661)
......+...+++.+...|..... .-+...+..+|++|+|+-
T Consensus 475 ~~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~~~~~~LkaLgN~g 518 (618)
T PF01347_consen 475 FCDPCSRCIIEKYVPYLEQELKEAVS-----RGDEEEKIVYLKALGNLG 518 (618)
T ss_dssp ------SS--GGGTHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHHT
T ss_pred cccccchhhHHHHHHHHHHHHHHHhh-----ccCHHHHHHHHHHhhccC
Confidence 111222223467777777762110 014577888999999985
No 243
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=52.36 E-value=68 Score=35.10 Aligned_cols=94 Identities=18% Similarity=0.189 Sum_probs=58.9
Q ss_pred hHHHHhhhccCChHHHHHHHHHHHHhccCCCCchh-HHHhCcHHHHHHhhccCC-HHHHHHHHHHHHHHHhhcCCCHHHH
Q 000326 141 LMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAA-DFVMEAVPLLTNLLQYHD-AKVLEHASVCLTRIAEAFASSPDKL 218 (1661)
Q Consensus 141 L~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~-~~v~~~lp~L~~lL~~~D-~~v~e~A~~aLs~L~~~~~~~~e~~ 218 (1661)
+..+.++|...+..-.-.++..+.-.|...+.+.+ ..-..-+..|..+|+..| ..+++.||.++..|.......++..
T Consensus 27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~ 106 (165)
T PF08167_consen 27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLT 106 (165)
T ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchH
Confidence 34455666655555554555555555554433333 223345666777777654 7889999999999999877788887
Q ss_pred HHHHhCC---cHHHHHHhh
Q 000326 219 DELCNHG---LVTQAATLI 234 (1661)
Q Consensus 219 ~~li~~g---ll~~Lv~LL 234 (1661)
.++.... +++.+++++
T Consensus 107 Rei~tp~l~~~i~~ll~l~ 125 (165)
T PF08167_consen 107 REIATPNLPKFIQSLLQLL 125 (165)
T ss_pred HHHhhccHHHHHHHHHHHH
Confidence 7777553 344444444
No 244
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=52.18 E-value=1.2e+02 Score=33.77 Aligned_cols=140 Identities=21% Similarity=0.185 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHhcCCCccc----ccccccC------cHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhccc
Q 000326 29 KQVEALTQLCEMLSIGTEESL----STFSVDS------FAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHY 98 (1661)
Q Consensus 29 ~ql~Al~~L~~lL~~~~~~~l----~~~~~~g------~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~ 98 (1661)
++..|+..|..+....+...+ ..+.+++ .-+.|+.++-.+.++.++..|+.+|..|.++....-...-+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 456677777555554333222 2233333 567777777666679999999999999998753222221111
Q ss_pred c-------------------cHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhh----ccCChHH
Q 000326 99 G-------------------AVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYL----DFFSTGV 155 (1661)
Q Consensus 99 G-------------------aVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lL----d~~~~~v 155 (1661)
. .-..|+..|..-....+.-|++.||..+....|-.-++.|-++.++..+ .+.++.+
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 1 2234442333334567778999999999988887666667666665544 5667777
Q ss_pred HHHHHHHHHHhcc
Q 000326 156 QRVALSTAANMCK 168 (1661)
Q Consensus 156 qr~Al~aLsNlc~ 168 (1661)
+-.++.++.-+..
T Consensus 162 ~v~~l~~~~~l~s 174 (182)
T PF13251_consen 162 RVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHHHHHHc
Confidence 7777777665554
No 245
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=51.93 E-value=1.6e+02 Score=37.79 Aligned_cols=160 Identities=14% Similarity=0.060 Sum_probs=106.9
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhccCc--chhhhcCchHHHHhhhccCC----hHHHHHHHHHHHHhccCCCCch
Q 000326 101 VTCFVARLLTIEYMDLAEQSLQALKKISQEHP--TACLRAGALMAVLSYLDFFS----TGVQRVALSTAANMCKKLPSDA 174 (1661)
Q Consensus 101 Vp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~--~~Il~~GgL~~LL~lLd~~~----~~vqr~Al~aLsNlc~~~~~~~ 174 (1661)
+..+. .++......-+-.++..|..++.+.. ...++..|+..+.+++...+ ..+...++.+++.+....- ..
T Consensus 85 a~~i~-e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vs 162 (713)
T KOG2999|consen 85 AKRIM-EILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VS 162 (713)
T ss_pred HHHHH-HHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-ee
Confidence 45566 34444444444449999999998877 36889999999999997543 3566667777776655211 11
Q ss_pred hHHHh-CcHHHHHH--hhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHH
Q 000326 175 ADFVM-EAVPLLTN--LLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTY 251 (1661)
Q Consensus 175 ~~~v~-~~lp~L~~--lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~ 251 (1661)
+..+. .++-.... -.+-.|..+...|+..|-.++-+ ++...+.+.+.-.+..|+..|... +..++
T Consensus 163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~---s~~~~~~v~eev~i~~li~hlq~~---------n~~i~ 230 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLG---SDTLRQLVAEEVPIETLIRHLQVS---------NQRIQ 230 (713)
T ss_pred eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhC---ChHHHHHHHhcCcHHHHHHHHHhc---------chHHH
Confidence 11111 11111222 23445788999999999999986 777888888888999999999876 46678
Q ss_pred HHHHHHHHHHhcCC-HHHHHHHHH
Q 000326 252 TGLIRLLSTCASGS-PLCAKTLLH 274 (1661)
Q Consensus 252 ~~alr~L~nLas~s-~~~t~~Ll~ 274 (1661)
..++..|-.+.... ++-.+.+++
T Consensus 231 ~~aial~nal~~~a~~~~R~~~~~ 254 (713)
T KOG2999|consen 231 TCAIALLNALFRKAPDDKRFEMAK 254 (713)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHH
Confidence 88888887776554 444444554
No 246
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.62 E-value=59 Score=38.79 Aligned_cols=166 Identities=16% Similarity=0.115 Sum_probs=104.7
Q ss_pred cchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 000326 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPS 90 (1661)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~ 90 (1661)
...+.+.+..|.++ |......++.-++.+.....+ .+. =.-..+|..+++=+++. ...+-..||-++.-|++....
T Consensus 87 ~~al~~~l~~L~s~-dW~~~vdgLn~irrLs~fh~e-~l~-~~L~~vii~vvkslKNl-RS~VsraA~~t~~difs~ln~ 162 (334)
T KOG2933|consen 87 EAALKQALKKLSSD-DWEDKVDGLNSIRRLSEFHPE-SLN-PMLHEVIIAVVKSLKNL-RSAVSRAACMTLADIFSSLNN 162 (334)
T ss_pred HHHHHHHHHHhchH-HHHHHhhhHHHHHHHHhhhHH-HHH-HHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHH
Confidence 44567778888876 888888999988876654322 111 01123455666666654 356777999999999987665
Q ss_pred chhhhcccccHHHHHHHHhcCCc---HHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhccCChHHHHHHHHHHHHhc
Q 000326 91 SCAAVVHYGAVTCFVARLLTIEY---MDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMC 167 (1661)
Q Consensus 91 ~~~~vV~~GaVp~Lv~kLL~~~~---~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc 167 (1661)
.+.. ....++-.|+.... -=|+|.|..||..+-..-. -.-.+..|+.++.++...+.+.++.+..|+.
T Consensus 163 ~i~~-----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vt----p~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 163 SIDQ-----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVT----PQKLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred HHHH-----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccC----hHHHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 5554 23344434554444 3478888888887754322 2234566777788889999999999988887
Q ss_pred cCC--CCchhHHHhCcHHHHHHhh
Q 000326 168 KKL--PSDAADFVMEAVPLLTNLL 189 (1661)
Q Consensus 168 ~~~--~~~~~~~v~~~lp~L~~lL 189 (1661)
... +......+.+.++.+.+-+
T Consensus 234 ~rl~v~~~~~~~~~dl~~a~~~~~ 257 (334)
T KOG2933|consen 234 IRLGVLPVLLQGSCDLSRAAQEQG 257 (334)
T ss_pred eeccccchhhHhHHHHHHHHHhhh
Confidence 633 3333334444444444433
No 247
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=51.55 E-value=57 Score=38.10 Aligned_cols=95 Identities=18% Similarity=0.163 Sum_probs=59.6
Q ss_pred HHHHHHHhhcCC-CHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch
Q 000326 14 LKKILSGLRADG-EEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC 92 (1661)
Q Consensus 14 l~~Ll~~L~s~~-D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~ 92 (1661)
+.+|-.-|.... ..+.++.|+-.||++ ++ +..|-+|++=|..+ +.-.+.+++.|++.|-+-
T Consensus 156 v~~lr~~lld~t~~l~~Ry~amF~LRn~---g~---------EeaI~al~~~l~~~-SalfrhEvAfVfGQl~s~----- 217 (289)
T KOG0567|consen 156 VHELRAELLDETKPLFERYRAMFYLRNI---GT---------EEAINALIDGLADD-SALFRHEVAFVFGQLQSP----- 217 (289)
T ss_pred HHHHHHHHHhcchhHHHHHhhhhHhhcc---Cc---------HHHHHHHHHhcccc-hHHHHHHHHHHHhhccch-----
Confidence 555555554322 335666777777642 22 23366677777765 577788888888776431
Q ss_pred hhhcccccHHHHHHHHhcC-CcHHHHHHHHHHHHHhhccCc
Q 000326 93 AAVVHYGAVTCFVARLLTI-EYMDLAEQSLQALKKISQEHP 132 (1661)
Q Consensus 93 ~~vV~~GaVp~Lv~kLL~~-~~~dl~Eqal~aL~nIS~~~~ 132 (1661)
-+||.|...|+.. ..+-++-.|+.||+-|+.+..
T Consensus 218 ------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~~ 252 (289)
T KOG0567|consen 218 ------AAIPSLIKVLLDETEHPMVRHEAAEALGAIADEDC 252 (289)
T ss_pred ------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHHH
Confidence 2677777555543 457778888888888877653
No 248
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=51.54 E-value=5.2e+02 Score=31.33 Aligned_cols=222 Identities=9% Similarity=0.053 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHH
Q 000326 28 GKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVAR 107 (1661)
Q Consensus 28 ~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~k 107 (1661)
.-...++.++++-+.+. -.+|-..+..+-.-+||-+|+-. +-++|.++.|+ +
T Consensus 35 ~~~~k~~eevsk~l~~~-----------------k~il~Gn~e~eP~~e~~~qLtqe----------f~~~~~l~~lI-~ 86 (342)
T KOG1566|consen 35 HKREKAVEEVSKNLDML-----------------KSILYGNDEAEPFAEAVAQLTQE----------FYNADVLSLLI-Q 86 (342)
T ss_pred HHHHHHHHHHHHHHhhh-----------------HHheeCCCCCCCChHHHHHHHHH----------HHhCCchHHHH-H
Confidence 44566666666665553 23333333333344566666553 45668888888 5
Q ss_pred HhcCCcHHHHHHHHHHHHHhhccCcc------hhhhcCchHHHHhhhcc-C-ChHHHHHHHHHHHHhccCCCCchhHHHh
Q 000326 108 LLTIEYMDLAEQSLQALKKISQEHPT------ACLRAGALMAVLSYLDF-F-STGVQRVALSTAANMCKKLPSDAADFVM 179 (1661)
Q Consensus 108 LL~~~~~dl~Eqal~aL~nIS~~~~~------~Il~~GgL~~LL~lLd~-~-~~~vqr~Al~aLsNlc~~~~~~~~~~v~ 179 (1661)
-+..-+.+-+..++....|+-+.+.+ ..+.+ -...+-.++.. . .+++--.|-..+..|.+...-..+..-.
T Consensus 87 ~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t-~~e~~~~lv~~~~~~~~iaL~cg~mlrEcirhe~LakiiL~s 165 (342)
T KOG1566|consen 87 HLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLET-NPEILDNLVKGYENTPEIALTCGNMLRECIRHEFLAKIILES 165 (342)
T ss_pred hhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHh-CHHHHHHHHhhhccchHHHHHHHHHHHHHHhhHHHHHHHHcc
Confidence 55555667777788888888665442 11111 12222233332 2 2344333434444444433333333345
Q ss_pred CcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCC---cHHH-HHHhhccCCCCCCCCCCChhHHHHHH
Q 000326 180 EAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHG---LVTQ-AATLISTSNSGGGQASLSTPTYTGLI 255 (1661)
Q Consensus 180 ~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~g---ll~~-Lv~LL~~~~~~~~~~~~s~~i~~~al 255 (1661)
..+.......+.+.-+|..+|...+..+... +...+.+++..+ ..+. --.||.+. +.-+...++
T Consensus 166 ~~~~~FF~~vq~p~FdiasdA~~tfK~llt~---Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~---------Nyvtkrqs~ 233 (342)
T KOG1566|consen 166 TNFEKFFLYVQLPNFDIASDAFSTFKELLTR---HKSVVAEFLIRNYDNFFAEVYEKLLRSE---------NYVTKRQSL 233 (342)
T ss_pred hhHHHHHHHHhccchHHHHHHHHHHHHHHHH---hHHHHHHHHHhChhhhHHHHHHHHhccc---------ceehHHHHH
Confidence 5666666677777778999999999988886 566666666554 3344 55566655 455888999
Q ss_pred HHHHHHhcCC---HHHHHHHHHcCChHHHHHhhcCCCc
Q 000326 256 RLLSTCASGS---PLCAKTLLHLGISGILKDILSGSGV 290 (1661)
Q Consensus 256 r~L~nLas~s---~~~t~~Ll~~gil~~L~~LL~~~~~ 290 (1661)
.+|+.+.-+. ..-++.+-...-+..+..+|....+
T Consensus 234 kllg~llldr~N~~~M~kYiss~enLKlmM~llrdksk 271 (342)
T KOG1566|consen 234 KLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSK 271 (342)
T ss_pred HhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccc
Confidence 9999876443 3444555556778899999987654
No 249
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=51.13 E-value=2e+02 Score=37.93 Aligned_cols=143 Identities=16% Similarity=0.146 Sum_probs=78.5
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcC----CcHHHHHHHHHHHHHhhcc--
Q 000326 57 FAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTI----EYMDLAEQSLQALKKISQE-- 130 (1661)
Q Consensus 57 ~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~----~~~dl~Eqal~aL~nIS~~-- 130 (1661)
.+..+.+++....-.. .+|+.++..++...+.....++ ..|. .|+.. ....+...|+-+++.+...
T Consensus 358 a~~~i~~~i~~~~~~~--~ea~~~~~~~~~~~~~Pt~~~l-----~~l~-~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c 429 (574)
T smart00638 358 ALKFIKQWIKNKKITP--LEAAQLLAVLPHTARYPTEEIL-----KALF-ELAESPEVQKQPYLRESALLAYGSLVRRYC 429 (574)
T ss_pred HHHHHHHHHHcCCCCH--HHHHHHHHHHHHhhhcCCHHHH-----HHHH-HHhcCccccccHHHHHHHHHHHHHHHHHHh
Confidence 4555666665443111 3555666665554333344433 3444 44443 3567888899999888652
Q ss_pred --Ccc--hhhhcCchHHHHhhhcc----CChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhc-c--CCHHHHHH
Q 000326 131 --HPT--ACLRAGALMAVLSYLDF----FSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQ-Y--HDAKVLEH 199 (1661)
Q Consensus 131 --~~~--~Il~~GgL~~LL~lLd~----~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~-~--~D~~v~e~ 199 (1661)
.+. ..+....++.+...|.. .+..-+..++.+|.|+-. ..+++.|..++. . ....+...
T Consensus 430 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------~~~i~~l~~~l~~~~~~~~~iR~~ 499 (574)
T smart00638 430 VNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH----------PSSIKVLEPYLEGAEPLSTFIRLA 499 (574)
T ss_pred cCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC----------hhHHHHHHHhcCCCCCCCHHHHHH
Confidence 111 11122244444444432 233334456777777643 234566666655 2 24689999
Q ss_pred HHHHHHHHHhhcCCCHHHHHH
Q 000326 200 ASVCLTRIAEAFASSPDKLDE 220 (1661)
Q Consensus 200 A~~aLs~L~~~~~~~~e~~~~ 220 (1661)
|+|||.+++.. .+..++.
T Consensus 500 Av~Alr~~a~~---~p~~v~~ 517 (574)
T smart00638 500 AILALRNLAKR---DPRKVQE 517 (574)
T ss_pred HHHHHHHHHHh---CchHHHH
Confidence 99999999875 4444433
No 250
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=50.98 E-value=1.3e+02 Score=35.60 Aligned_cols=161 Identities=16% Similarity=0.149 Sum_probs=79.4
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhc------c
Q 000326 57 FAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQ------E 130 (1661)
Q Consensus 57 ~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~------~ 130 (1661)
.++-|..+|+.++ ++.. .++|+|+.. .+|+...||.|++ ...+.++...|+..|.+|.- +
T Consensus 14 ~LkdL~r~lr~dd-~~~~-~v~r~lg~~---------~iv~~DLiPiL~~---~~~~~~l~~~~l~LLV~LT~P~~~~~~ 79 (266)
T PF04821_consen 14 CLKDLKRFLRRDD-EDQR-DVRRQLGEW---------NIVQKDLIPILIS---YKDDDKLFLACLRLLVNLTWPIELLVE 79 (266)
T ss_pred HHHHHHHHHHHhC-cchH-HHHHHHHHh---------chhhhhHHHHHHh---ccCchHHHHHHHHHHHHhCCCHHHhcc
Confidence 4566666666543 2222 555555442 4667777886662 23367788888888888763 1
Q ss_pred Cc-chhhhcCchHHHHhhhc-----cCChHHHHHHHHHHHHhcc----CCCCchhHHHhCcHHHHHHhhccCCHHHHHHH
Q 000326 131 HP-TACLRAGALMAVLSYLD-----FFSTGVQRVALSTAANMCK----KLPSDAADFVMEAVPLLTNLLQYHDAKVLEHA 200 (1661)
Q Consensus 131 ~~-~~Il~~GgL~~LL~lLd-----~~~~~vqr~Al~aLsNlc~----~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A 200 (1661)
.. ........+..+.+++. |.+..+.+..+..+..+.. .....+...++-++-.+.++|.-+++......
T Consensus 80 ~~~~~~~~~~~~~~l~~~l~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip~~~~~~~~ 159 (266)
T PF04821_consen 80 SQPKDKNQRRNIPELLKYLQSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIPDPPSASKR 159 (266)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCCCCcccccc
Confidence 11 11111222233333332 2233333333333332221 11334445566666666676665543321110
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccC
Q 000326 201 SVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTS 237 (1661)
Q Consensus 201 ~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~ 237 (1661)
-. ..-. .....+..+.+.|+..-|+.+.++.
T Consensus 160 ~~--~~~~----~~d~li~~l~~~~v~~lLL~l~s~~ 190 (266)
T PF04821_consen 160 SD--EDSS----LHDQLIWALFESGVLDLLLTLASSP 190 (266)
T ss_pred cc--hhHH----HHHHHHHHHHHcCHHHHHHHHHhCc
Confidence 00 0000 1345666777778888888887765
No 251
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=50.53 E-value=85 Score=30.52 Aligned_cols=70 Identities=21% Similarity=0.220 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHhhcCCHHHHHHHhhh--cchHHHHHHHhhcCCCchHHhHHHHHHH
Q 000326 379 FGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSV--TNISSFLAGVLAWKDPHVLIPSLQIAEI 453 (1661)
Q Consensus 379 f~~~l~p~Li~vy~ss~~~~VR~~~L~~i~r~v~~~~~~~L~~~l~~--~~~ss~la~il~~~d~~l~~~aL~i~~~ 453 (1661)
|=+.+|-.+..+|.++.+..||..+|.+|..|+...- +. +++ ..+=+.|.......+..++..|.++++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~-~~----i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRG-EN----IKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH-HH----HHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 4467788889999999999999999999999996543 22 233 3445555555556678899999998864
No 252
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=50.48 E-value=79 Score=34.49 Aligned_cols=111 Identities=17% Similarity=0.185 Sum_probs=66.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhcC-------------------CCcc-------------cccccccCcHHHHH
Q 000326 15 KKILSGLRADGEEGKQVEALTQLCEMLSIG-------------------TEES-------------LSTFSVDSFAPVLV 62 (1661)
Q Consensus 15 ~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~-------------------~~~~-------------l~~~~~~g~vp~Lv 62 (1661)
..|+..|+.+....+++++++.|+-+=... +... ...+-..-++..|+
T Consensus 13 ~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~~vvi~~L~ 92 (160)
T PF11865_consen 13 DILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYPTVVINALM 92 (160)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHHHHHHHHHHH
Confidence 445556676667899999988886431110 0000 01111222677888
Q ss_pred HhhcCCCCHHHHHHHHHHHHHhhccCC-cchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhh
Q 000326 63 GLLNHESNPDIMLLAARALTHLCDVLP-SSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKIS 128 (1661)
Q Consensus 63 ~lL~~~~~~eiq~~A~raL~NLa~~~p-~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS 128 (1661)
.+|+++.-..-+..+..++.+|+.... .+...+= -+||.++ ..+......++|..++-|+.|.
T Consensus 93 ~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~--~viP~~l-~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 93 RILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLP--QVIPIFL-RVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHH--HHhHHHH-HHHHhCCHHHHHHHHHHHHHHH
Confidence 888876655556678888888885422 1222222 3788998 4545444488888888888764
No 253
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=50.08 E-value=23 Score=38.38 Aligned_cols=113 Identities=15% Similarity=0.205 Sum_probs=73.9
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhc-CCCCHHHHHHHHHHHHHhhccCCc
Q 000326 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLN-HESNPDIMLLAARALTHLCDVLPS 90 (1661)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~-~~~~~eiq~~A~raL~NLa~~~p~ 90 (1661)
..+.+.+..+-.+.+.+....++..+..++-...+-.-..+..+|+.+.++.++. ...+...|..++.+|..-| ..-.
T Consensus 42 ~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc-~d~~ 120 (157)
T PF11701_consen 42 EKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAAC-IDKS 120 (157)
T ss_dssp HHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHT-TSHH
T ss_pred HHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHH-ccHH
Confidence 3556666666443344567778888877777643322245778899999999998 3345888888888876544 4444
Q ss_pred chhhhcccccHHHHHHHHhc-CCcHH-HHHHHHHHHHHh
Q 000326 91 SCAAVVHYGAVTCFVARLLT-IEYMD-LAEQSLQALKKI 127 (1661)
Q Consensus 91 ~~~~vV~~GaVp~Lv~kLL~-~~~~d-l~Eqal~aL~nI 127 (1661)
++..|.+ ..++.|- ++.. .++.. ++..|+-+|.+|
T Consensus 121 ~r~~I~~-~~~~~L~-~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 121 CRTFISK-NYVSWLK-ELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HHHCCHH-HCHHHHH-HHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHHHHHH-HHHHHHH-HHHccccchHHHHHHHHHHHhcC
Confidence 5555555 5578888 7774 44454 788888777764
No 254
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=49.52 E-value=75 Score=41.77 Aligned_cols=111 Identities=15% Similarity=0.163 Sum_probs=83.4
Q ss_pred cccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchh
Q 000326 96 VHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAA 175 (1661)
Q Consensus 96 V~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~ 175 (1661)
.+.+++|.|+ +|..+.+..++---|.=+.+....-.+.++..-.++.+..-+...+..+....+.++.-++......
T Consensus 327 yq~~i~p~l~-kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~-- 403 (690)
T KOG1243|consen 327 YQVRIIPVLL-KLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR-- 403 (690)
T ss_pred cccchhhhHH-HHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--
Confidence 4457899999 9999999999888888888887777778888888898888888888888888887777776654433
Q ss_pred HHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHh
Q 000326 176 DFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAE 209 (1661)
Q Consensus 176 ~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~ 209 (1661)
..-.+.+-.|..+-..++..+..+..-|+..|+.
T Consensus 404 ~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~ 437 (690)
T KOG1243|consen 404 NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAP 437 (690)
T ss_pred hhcHHHHHHHHhhCccccCcccccceeeeccccc
Confidence 2233456666665555567777777777777776
No 255
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=48.95 E-value=4.5e+02 Score=31.16 Aligned_cols=213 Identities=16% Similarity=0.167 Sum_probs=124.0
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHhcCCCc------cc-cccc-------ccCcHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 000326 18 LSGLRADGEEGKQVEALTQLCEMLSIGTEE------SL-STFS-------VDSFAPVLVGLLNHESNPDIMLLAARALTH 83 (1661)
Q Consensus 18 l~~L~s~~D~~~ql~Al~~L~~lL~~~~~~------~l-~~~~-------~~g~vp~Lv~lL~~~~~~eiq~~A~raL~N 83 (1661)
+..|.+. .+..=++|+.-|.++|..-+-+ .+ ..++ -.|+.+-+++=|.+. .....+.+.|.-
T Consensus 13 vAcL~S~-~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss---~t~e~tl~lL~~ 88 (262)
T PF14225_consen 13 VACLESI-HEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSS---STYELTLRLLSR 88 (262)
T ss_pred HHhhcCC-cHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCC---CcHHHHHHHHHH
Confidence 4556665 6777778888888877754310 11 1222 233444444444433 334455556666
Q ss_pred hhccCCcchhhhccc----------ccHHHHHHHHhcCC---cHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhcc
Q 000326 84 LCDVLPSSCAAVVHY----------GAVTCFVARLLTIE---YMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDF 150 (1661)
Q Consensus 84 La~~~p~~~~~vV~~----------GaVp~Lv~kLL~~~---~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~ 150 (1661)
++.... ..+|.. +.+|.+++.+-... ......+++..|..+|.... ...|..++.....
T Consensus 89 L~~~~~---~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~-----~~~La~il~~ya~ 160 (262)
T PF14225_consen 89 LTPLPD---DPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG-----LPNLARILSSYAK 160 (262)
T ss_pred HhcCCC---ccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC-----CccHHHHHHHHHh
Confidence 654321 123322 35777775443333 12455677788888875433 3455555555431
Q ss_pred --C--ChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCc
Q 000326 151 --F--STGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGL 226 (1661)
Q Consensus 151 --~--~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gl 226 (1661)
| .....+.++..+++-+. | .....++-.|..+|.+.-+-+...++..|..+....... .. ..+++
T Consensus 161 ~~fr~~~dfl~~v~~~l~~~f~--P----~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~----~~-~~~dl 229 (262)
T PF14225_consen 161 GRFRDKDDFLSQVVSYLREAFF--P----DHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR----SP-HGADL 229 (262)
T ss_pred cCCCCHHHHHHHHHHHHHHHhC--c----hhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC----CC-cchHH
Confidence 2 22445555555554332 1 123456777889999888889999998888888742111 11 66679
Q ss_pred HHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCC
Q 000326 227 VTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGS 265 (1661)
Q Consensus 227 l~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s 265 (1661)
+..|.++|... -...|+.+|-++.+.+
T Consensus 230 ispllrlL~t~------------~~~eAL~VLd~~v~~s 256 (262)
T PF14225_consen 230 ISPLLRLLQTD------------LWMEALEVLDEIVTRS 256 (262)
T ss_pred HHHHHHHhCCc------------cHHHHHHHHHHHHhhc
Confidence 99999999764 5667888888776543
No 256
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=48.68 E-value=66 Score=38.42 Aligned_cols=35 Identities=17% Similarity=0.310 Sum_probs=21.5
Q ss_pred chHHHHhhhccCChHHHHHHHHHHHHhccCCCCch
Q 000326 140 ALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDA 174 (1661)
Q Consensus 140 gL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~ 174 (1661)
.++++|.++|...+.++..++.++..+..+.+...
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~ 154 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAE 154 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhh
Confidence 35666666666666666666666666666554444
No 257
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=47.89 E-value=3.2e+02 Score=37.57 Aligned_cols=183 Identities=10% Similarity=0.031 Sum_probs=119.8
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc--hhh
Q 000326 59 PVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT--ACL 136 (1661)
Q Consensus 59 p~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~--~Il 136 (1661)
+.|-.-|.+. +..-..+|...+.-+++... -....-..|.+-.++...+.-.++.+.-+++.+|+-|+..-.. .=.
T Consensus 256 ~~l~t~~~s~-~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~ 333 (815)
T KOG1820|consen 256 KNLETEMLSK-KWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY 333 (815)
T ss_pred hHHHHhhhcc-chHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH
Confidence 3333334444 35666788888887777443 1112223455666664445556789999999999999876554 233
Q ss_pred hcCchHHHHhhhccCCh---HHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCC
Q 000326 137 RAGALMAVLSYLDFFST---GVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFAS 213 (1661)
Q Consensus 137 ~~GgL~~LL~lLd~~~~---~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~ 213 (1661)
..+..+.++..+..... +..+.|+-+++|.+ .....++.+...+.+..+.+...+...+.+......+
T Consensus 334 ~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~---------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 334 AKNVFPSLLDRLKEKKSELRDALLKALDAILNST---------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc---------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence 45677888888875544 44555666666622 2455788899999999999999988888888876322
Q ss_pred CHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhc
Q 000326 214 SPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCAS 263 (1661)
Q Consensus 214 ~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas 263 (1661)
.....---.++++.++...... +..+...++.+++.+..
T Consensus 405 --~~~~~~t~~~l~p~~~~~~~D~---------~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 405 --KTVEKETVKTLVPHLIKHINDT---------DKDVRKAALEAVAAVMK 443 (815)
T ss_pred --cCcchhhHHHHhHHHhhhccCC---------cHHHHHHHHHHHHHHHH
Confidence 1222222235777777777655 67899999999988754
No 258
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=47.74 E-value=1.1e+02 Score=40.28 Aligned_cols=176 Identities=18% Similarity=0.157 Sum_probs=96.9
Q ss_pred cccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCC---CHHHHHHHHHHHHHhh
Q 000326 9 HQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHES---NPDIMLLAARALTHLC 85 (1661)
Q Consensus 9 ~~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~---~~eiq~~A~raL~NLa 85 (1661)
+...-+.-|++.|.+..- ...+|...+..++.+-. -|....+..|..|+.++. .+.+...|.-+++++.
T Consensus 354 GT~~a~~~i~~~i~~~~~--~~~ea~~~~~~~~~~~~------~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv 425 (574)
T smart00638 354 GTPPALKFIKQWIKNKKI--TPLEAAQLLAVLPHTAR------YPTEEILKALFELAESPEVQKQPYLRESALLAYGSLV 425 (574)
T ss_pred CCHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhhh------cCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHH
Confidence 345566777777766421 22344444544444432 234456788888887542 3344444444444433
Q ss_pred ---ccCCcchhhhcccccHHHHHHHHhc---CCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhc---cCChHHH
Q 000326 86 ---DVLPSSCAAVVHYGAVTCFVARLLT---IEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLD---FFSTGVQ 156 (1661)
Q Consensus 86 ---~~~p~~~~~vV~~GaVp~Lv~kLL~---~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd---~~~~~vq 156 (1661)
+.....+...+-...++.|.+.|.. ..+.+-+.-++.||||+..... +..+..++. ..+..++
T Consensus 426 ~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~--------i~~l~~~l~~~~~~~~~iR 497 (574)
T smart00638 426 RRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSS--------IKVLEPYLEGAEPLSTFIR 497 (574)
T ss_pred HHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhH--------HHHHHHhcCCCCCCCHHHH
Confidence 3333222212223467777754433 2345556678999999865332 334444443 2355677
Q ss_pred HHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhc--cCCHHHHHHHHHHHHHH
Q 000326 157 RVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQ--YHDAKVLEHASVCLTRI 207 (1661)
Q Consensus 157 r~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~--~~D~~v~e~A~~aLs~L 207 (1661)
..|+|++.++....+. .+-+.|..+.. ..+.+|...|+..|..-
T Consensus 498 ~~Av~Alr~~a~~~p~-------~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 498 LAAILALRNLAKRDPR-------KVQEVLLPIYLNRAEPPEVRMAAVLVLMET 543 (574)
T ss_pred HHHHHHHHHHHHhCch-------HHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence 7899999988653322 23455556643 34688888777766543
No 259
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=46.44 E-value=1e+02 Score=34.50 Aligned_cols=73 Identities=26% Similarity=0.275 Sum_probs=57.1
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch
Q 000326 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC 92 (1661)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~ 92 (1661)
-++.+++...+. |..+++.|+.-+.-++..+ -+.+...+|.||.|..++ ++.+...|-..+..+.+-.+...
T Consensus 9 yl~~Il~~~~~~-~~~vr~~Al~~l~~il~qG------LvnP~~cvp~lIAL~ts~-~~~ir~~A~~~l~~l~eK~~s~v 80 (187)
T PF12830_consen 9 YLKNILELCLSS-DDSVRLAALQVLELILRQG------LVNPKQCVPTLIALETSP-NPSIRSRAYQLLKELHEKHESLV 80 (187)
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHHHhcC------CCChHHHHhHhhhhhCCC-ChHHHHHHHHHHHHHHHHhHHHH
Confidence 356777766676 8999999999997777754 244556899999999876 69999999999999988655443
Q ss_pred h
Q 000326 93 A 93 (1661)
Q Consensus 93 ~ 93 (1661)
.
T Consensus 81 ~ 81 (187)
T PF12830_consen 81 E 81 (187)
T ss_pred H
Confidence 3
No 260
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=45.22 E-value=1.3e+02 Score=33.65 Aligned_cols=117 Identities=17% Similarity=0.165 Sum_probs=83.5
Q ss_pred cchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCC---------cccccccc---------cCcHHHHHHhhcCCCCHH
Q 000326 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTE---------ESLSTFSV---------DSFAPVLVGLLNHESNPD 72 (1661)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~---------~~l~~~~~---------~g~vp~Lv~lL~~~~~~e 72 (1661)
...-..|+..+-.|.++..+..|+..|+.+|..... .....|.. ..+=..|+..|+.+.++.
T Consensus 38 ~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~ 117 (182)
T PF13251_consen 38 RPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPP 117 (182)
T ss_pred CCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccH
Confidence 344456777776666999999999999999987621 01111111 113446777778888888
Q ss_pred HHHHHHHHHHHhhccCCcchhhhcccccHHHHHH---HHhcCCcHHHHHHHHHHHHHhhcc
Q 000326 73 IMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVA---RLLTIEYMDLAEQSLQALKKISQE 130 (1661)
Q Consensus 73 iq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~---kLL~~~~~dl~Eqal~aL~nIS~~ 130 (1661)
++.+.++||..+..+.|-++- ..|.++.++. .++...+.+++..++.+++-+..-
T Consensus 118 ~l~q~lK~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 118 VLTQLLKCLAVLVQATPYHRL---PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHHccCChhhc---CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 999999999999999885543 3466555543 567778999999999999988654
No 261
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=43.00 E-value=90 Score=33.36 Aligned_cols=76 Identities=17% Similarity=0.156 Sum_probs=61.8
Q ss_pred HhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHH
Q 000326 178 VMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRL 257 (1661)
Q Consensus 178 v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~ 257 (1661)
-++++-.|.+.|++.++.++-.|+..|-.++.+ .......++.+.+++..|+.++... ..+.++..++.+
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkN--CG~~fh~evas~~fl~~l~~l~~~~--------~~~~Vk~kil~l 108 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKN--CGTHFHDEVASREFMDELKDLIKTT--------KNEEVRQKILEL 108 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH--CCHHHHHHHhhHHHHHHHHHHHccc--------CCHHHHHHHHHH
Confidence 567899999999999999999999999998886 2345666677889999999999753 267788888888
Q ss_pred HHHHhc
Q 000326 258 LSTCAS 263 (1661)
Q Consensus 258 L~nLas 263 (1661)
|-.-+.
T Consensus 109 i~~W~~ 114 (142)
T cd03569 109 IQAWAL 114 (142)
T ss_pred HHHHHH
Confidence 877653
No 262
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.82 E-value=8.2e+02 Score=33.36 Aligned_cols=377 Identities=14% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCccc---ccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHH
Q 000326 32 EALTQLCEMLSIGTEESL---STFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARL 108 (1661)
Q Consensus 32 ~Al~~L~~lL~~~~~~~l---~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kL 108 (1661)
..+.++|+.....+-... ..+-.+..+.-.-+-|...+----...||-.+.-|+.........|+. +-|..++++.
T Consensus 334 ~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~-~~v~~~l~~y 412 (960)
T KOG1992|consen 334 NVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFS-SEVQRLLDQY 412 (960)
T ss_pred HHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHH-HHHHHHHHHh
Q ss_pred hcCCcHHH--HHHHHHHHHHhhccCcchhhhcCchHHHHhhhccCChHHHHHHHH------------HHHHhccCCCCch
Q 000326 109 LTIEYMDL--AEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALS------------TAANMCKKLPSDA 174 (1661)
Q Consensus 109 L~~~~~dl--~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~------------aLsNlc~~~~~~~ 174 (1661)
...+..+. .+-++....-++.......-..-....++...+||...+...... ++-.+........
T Consensus 413 ~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~ 492 (960)
T KOG1992|consen 413 SKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLG 492 (960)
T ss_pred ccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCC
Q ss_pred hHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHH-----HHHhhccCCCCCCCCCCChh
Q 000326 175 ADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQ-----AATLISTSNSGGGQASLSTP 249 (1661)
Q Consensus 175 ~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~-----Lv~LL~~~~~~~~~~~~s~~ 249 (1661)
-.+...++|.+...|..+..-|-..|..|+-.|-.- ....-..++.++.+.. +.+|..+-+..++ .=++-
T Consensus 493 ~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~v---re~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~--~Eney 567 (960)
T KOG1992|consen 493 KEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTV---RENSNAKIFGAEDIAPFVEILLTNLFKALSLPGK--AENEY 567 (960)
T ss_pred hHHHHHHHHHHHHhccCcchHHHHHHHHHHHhcccc---ccCccccccchhhcchHHHHHHHHHHHhccCCcc--cccHH
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhcccCCCCCCCCCCCC
Q 000326 250 TYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLP 329 (1661)
Q Consensus 250 i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~~~~ 329 (1661)
+...+.|+++.+=..--...-.++. .|-+++....+..+....+ ..+.+-|+-++-
T Consensus 568 lmKaImRii~i~~~~i~p~~~~~l~-----~Lteiv~~v~KNPs~P~fn---------HYLFEsi~~li~---------- 623 (960)
T KOG1992|consen 568 LMKAIMRIISILQSAIIPHAPELLR-----QLTEIVEEVSKNPSNPQFN---------HYLFESIGLLIR---------- 623 (960)
T ss_pred HHHHHHHHHHhCHHhhhhhhhHHHH-----HHHHHHHHHhcCCCCchhH---------HHHHHHHHHHHH----------
Q ss_pred ccccccccCCcccCCCCCCCCCCCCCCCCcchhhhHHHhhccCHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 000326 330 SSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGK 409 (1661)
Q Consensus 330 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~f~~~l~p~Li~vy~ss~~~~VR~~~L~~i~r 409 (1661)
..++.+|..+..|...|+|++-.|++.-+-- .=-+++..+.-
T Consensus 624 -------------------------------------~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~E-fiPYvfQlla~ 665 (960)
T KOG1992|consen 624 -------------------------------------KTCKANPSAVSSLEEALFPVFQTILSEDIQE-FIPYVFQLLAV 665 (960)
T ss_pred -------------------------------------HHhccCchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q ss_pred HhhcCCHHHHHHHhhhcchHHHHHHHhh---cCCCchHHhHHHHHHHHHhhCchhhhhhHHhhcHHHHHHHHHhcC
Q 000326 410 LMYFSSAEMIQSLLSVTNISSFLAGVLA---WKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILAG 482 (1661)
Q Consensus 410 ~v~~~~~~~L~~~l~~~~~ss~la~il~---~~d~~l~~~aL~i~~~Ll~K~pd~f~~~f~REGV~~~I~~L~~~~ 482 (1661)
+|..+....-. .+..++--+|+ |+-..-+-..+.+.+.++++-|..+...=+=.||+--.++|...+
T Consensus 666 lve~~~~~ip~------~~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSk 735 (960)
T KOG1992|consen 666 LVEHSSGTIPD------SYSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASK 735 (960)
T ss_pred HHHhcCCCCch------hHHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCc
No 263
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=42.35 E-value=7.3e+02 Score=30.39 Aligned_cols=70 Identities=17% Similarity=0.288 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCC--cHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHH
Q 000326 194 AKVLEHASVCLTRIAEAFASSPDKLDELCNHG--LVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAK 270 (1661)
Q Consensus 194 ~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~g--ll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~t~ 270 (1661)
.+++.-=|.||+.++..+ .+++....++..+ ++..|++||...+ .+...++..|+++|..|+........
T Consensus 233 ~~~l~iRllAi~~l~~~~-~~~~~~~~~l~~dp~l~~eL~eLi~~~~------~v~~~i~~~Al~~L~ai~~~~~~~~~ 304 (329)
T PF06012_consen 233 RQLLQIRLLAIANLVYIH-PESQFSSKLLEQDPELVNELVELISPEE------KVPMDIQTAALRALEAISHKRPRCSD 304 (329)
T ss_pred HHHHHHHHHHHHHHHhhC-CCHHHHHHHHhcChHHHHHHHHHhCCCC------CCCHHHHHHHHHHHHHHHhccccHHH
Confidence 455556667777775532 3678888888887 9999999998763 46888999999999999986554443
No 264
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=41.37 E-value=1.5e+02 Score=31.78 Aligned_cols=111 Identities=11% Similarity=0.157 Sum_probs=78.4
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000326 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1661)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~ 91 (1661)
+.+.++|+..-++.....-.....++|+++.... .....++..|.+-|++. ++.+|+.|...|--++..+-..
T Consensus 3 ~~~~~~I~kATs~~l~~~dw~~ileicD~In~~~------~~~k~a~ral~krl~~~-n~~vql~AL~LLe~~vkNCG~~ 75 (142)
T cd03569 3 SEFDELIEKATSELLGEPDLASILEICDMIRSKD------VQPKYAMRALKKRLLSK-NPNVQLYALLLLESCVKNCGTH 75 (142)
T ss_pred chHHHHHHHHcCcccCccCHHHHHHHHHHHhCCC------CCHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHCCHH
Confidence 4577888887665555666777788999987542 23456788888888875 6999999988887777754333
Q ss_pred hh-hhcccccHHHHHHHHhc-CCcHHHHHHHHHHHHHhhcc
Q 000326 92 CA-AVVHYGAVTCFVARLLT-IEYMDLAEQSLQALKKISQE 130 (1661)
Q Consensus 92 ~~-~vV~~GaVp~Lv~kLL~-~~~~dl~Eqal~aL~nIS~~ 130 (1661)
.+ .|...+.+..|+ +|+. .....|++.++..+..-+..
T Consensus 76 fh~evas~~fl~~l~-~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 76 FHDEVASREFMDELK-DLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHhhHHHHHHHH-HHHcccCCHHHHHHHHHHHHHHHHH
Confidence 33 455667777777 5654 45677888777777776644
No 265
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=40.83 E-value=1.7e+02 Score=38.90 Aligned_cols=173 Identities=16% Similarity=0.131 Sum_probs=90.9
Q ss_pred cchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCC---CCHHHHHHHHHHHHHhhc-
Q 000326 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHE---SNPDIMLLAARALTHLCD- 86 (1661)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~---~~~eiq~~A~raL~NLa~- 86 (1661)
..-+.-+++.|.+. .-...+|.+.|..+..... -|...++..|..|++.+ .++.+...|.-+++.|..
T Consensus 394 ~~av~~i~~~I~~~--~~~~~ea~~~l~~l~~~~~------~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~ 465 (618)
T PF01347_consen 394 NPAVKFIKDLIKSK--KLTDDEAAQLLASLPFHVR------RPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHK 465 (618)
T ss_dssp HHHHHHHHHHHHTT---S-HHHHHHHHHHHHHT-----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhhcC------CCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCc
Confidence 34455555556543 1222334444544444332 23455677777777643 235555555555555542
Q ss_pred --cCC------cchhhhcccccHHHHHHHHh---cCCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhccC---C
Q 000326 87 --VLP------SSCAAVVHYGAVTCFVARLL---TIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFF---S 152 (1661)
Q Consensus 87 --~~p------~~~~~vV~~GaVp~Lv~kLL---~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~---~ 152 (1661)
... ......+-.-.++.|...|- ...+.+-..-+|.||+|+-.. ..++.++.++... +
T Consensus 466 ~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~--------~~i~~l~~~i~~~~~~~ 537 (618)
T PF01347_consen 466 YCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP--------ESIPVLLPYIEGKEEVP 537 (618)
T ss_dssp HHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G--------GGHHHHHTTSTTSS-S-
T ss_pred eeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc--------hhhHHHHhHhhhccccc
Confidence 221 11122233356777774444 345567788899999999542 3567777777644 5
Q ss_pred hHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhcc--CCHHHHHHHHHHHHH
Q 000326 153 TGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQY--HDAKVLEHASVCLTR 206 (1661)
Q Consensus 153 ~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~--~D~~v~e~A~~aLs~ 206 (1661)
..++-.|+|++.++.... -..+.+.|..++.. .+.+|...|+..|..
T Consensus 538 ~~~R~~Ai~Alr~~~~~~-------~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 538 HFIRVAAIQALRRLAKHC-------PEKVREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp HHHHHHHHHTTTTGGGT--------HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhcC-------cHHHHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 667778999998774332 22356667777543 467888777665554
No 266
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=40.61 E-value=1.1e+02 Score=32.36 Aligned_cols=77 Identities=17% Similarity=0.123 Sum_probs=60.0
Q ss_pred HHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHH
Q 000326 177 FVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIR 256 (1661)
Q Consensus 177 ~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr 256 (1661)
..++++..|..-|++.++.++-.|+..|-.++.+ .......++.+.+++..|+.++.... ..+.++..++.
T Consensus 34 ~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkN--cg~~f~~ev~s~~fl~~L~~l~~~~~-------~~~~Vk~kil~ 104 (133)
T smart00288 34 GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKN--CGSKFHLEVASKEFLNELVKLIKPKY-------PLPLVKKRILE 104 (133)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH--CCHHHHHHHHhHHHHHHHHHHHcCCC-------CcHHHHHHHHH
Confidence 4567889999999999999999999999999986 23445566777789999999997653 12337778887
Q ss_pred HHHHHh
Q 000326 257 LLSTCA 262 (1661)
Q Consensus 257 ~L~nLa 262 (1661)
++..-+
T Consensus 105 li~~W~ 110 (133)
T smart00288 105 LIQEWA 110 (133)
T ss_pred HHHHHH
Confidence 777654
No 267
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=40.42 E-value=8e+02 Score=31.79 Aligned_cols=151 Identities=16% Similarity=0.192 Sum_probs=83.3
Q ss_pred ccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCc----HHHHHHhhcCCCCHHHHHHHHHHHHHhh
Q 000326 10 QSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSF----APVLVGLLNHESNPDIMLLAARALTHLC 85 (1661)
Q Consensus 10 ~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~----vp~Lv~lL~~~~~~eiq~~A~raL~NLa 85 (1661)
..+.++-||+.++.. |+++|-.++..|.+++..++.......-+-.| -+-|+++-..--.+..+..-|-+|..||
T Consensus 45 lk~dLellVeriqd~-d~~l~~~sLn~LkeviksStSsmtavpkplkfLrp~y~dl~~iydkw~~~n~K~~LaDilS~l~ 123 (881)
T COG5110 45 LKGDLELLVERIQDP-DIDLQNNSLNMLKEVIKSSTSSMTAVPKPLKFLRPNYLDLLEIYDKWLEGNKKRWLADILSALC 123 (881)
T ss_pred hcccHHHHHHHhhCC-ChHHHHHHHHHHHHHHhccccccccCCchhhhcCCCcchHHHHHhhccCcchhhHHHHHHHHHe
Confidence 345788899999987 99999999999999998775422111111111 1223333321112333334445555555
Q ss_pred ccCCcchh-----hhcccc----------cHHHHHHHH---------hcCC-cHHHHHHHHHHHHHhhccCcc-----hh
Q 000326 86 DVLPSSCA-----AVVHYG----------AVTCFVARL---------LTIE-YMDLAEQSLQALKKISQEHPT-----AC 135 (1661)
Q Consensus 86 ~~~p~~~~-----~vV~~G----------aVp~Lv~kL---------L~~~-~~dl~Eqal~aL~nIS~~~~~-----~I 135 (1661)
-...+... .-++.. -|..|.... .+.+ ..|.++-|+.++-..-.++.. .+
T Consensus 124 m~yse~~kh~sL~YRl~g~i~D~~~WGHeYvrhLa~eI~ev~n~~~e~daps~~dt~~l~l~ivpfflkHNaE~dAiDlL 203 (881)
T COG5110 124 MVYSENGKHKSLAYRLEGNIIDLKEWGHEYVRHLAGEIAEVKNDQNEMDAPSFADTRDLGLEIVPFFLKHNAEFDAIDLL 203 (881)
T ss_pred eecccccchhhHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhcchhhccCCchhHHHHHHHHHhHHHHhcccchHHHHHH
Confidence 33332110 011111 122222111 1112 367888888888777766654 47
Q ss_pred hhcCchHHHHhhhccCChHHHHHHHHHH
Q 000326 136 LRAGALMAVLSYLDFFSTGVQRVALSTA 163 (1661)
Q Consensus 136 l~~GgL~~LL~lLd~~~~~vqr~Al~aL 163 (1661)
++-|+|..+++|.+.. ..+|.|+...
T Consensus 204 ~Evg~Iekv~~fVd~~--n~~RvclYl~ 229 (881)
T COG5110 204 VEVGGIEKVLDFVDTH--NYNRVCLYLE 229 (881)
T ss_pred HHhcchhhhhhhhccc--chhHHHHHHH
Confidence 8899999999999843 4556555543
No 268
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=40.08 E-value=2.1e+02 Score=40.15 Aligned_cols=114 Identities=15% Similarity=0.095 Sum_probs=58.9
Q ss_pred CchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHH
Q 000326 139 GALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKL 218 (1661)
Q Consensus 139 GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~ 218 (1661)
-++..++.+|+.....+++.|+.++.-+...........+..++-.|...|.--|. +..+..-+..+.+.+.-.++-+
T Consensus 208 ~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~ldd--l~~s~~si~~ll~~l~~~~evl 285 (1549)
T KOG0392|consen 208 LVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDD--LSSSTASIMHLLDELCIENEVL 285 (1549)
T ss_pred HHHHHHHhhhhhcchHHHHHHHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhh--cchhhHHHHHHHHHHhhhHHHH
Confidence 45666777788888889999888887776644333333444455555555433333 2222222222222211122222
Q ss_pred HHHH----hCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhc
Q 000326 219 DELC----NHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCAS 263 (1661)
Q Consensus 219 ~~li----~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas 263 (1661)
+... +.|+++++.-.+.+. =..+...++..+..+..
T Consensus 286 ~l~~~~n~~~~Lvp~~~p~l~~~---------i~sv~~a~l~~l~~lle 325 (1549)
T KOG0392|consen 286 DLFEQQNLEVGLVPRLWPFLRHT---------ISSVRRAALETLAMLLE 325 (1549)
T ss_pred HHHHHhhhhhccchhhHHHHHHH---------HHHHHHHHHHHHHHHHh
Confidence 1111 237888887777764 13355555555555543
No 269
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=38.68 E-value=4.4e+02 Score=31.69 Aligned_cols=71 Identities=20% Similarity=0.126 Sum_probs=53.2
Q ss_pred ccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccC
Q 000326 52 FSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEH 131 (1661)
Q Consensus 52 ~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~ 131 (1661)
.....+|..+++-|... +.+....|++||.+|+-|.-..+. ...+|.-|+-.|..
T Consensus 56 ~~~~~~i~~ll~~L~~~-~~~~R~~al~~LlYi~~G~~~~~~---------------------s~~~ql~~i~~N~~--- 110 (293)
T PF07923_consen 56 DQRKDFIEKLLDQLESS-DSEDRLEALRALLYIAQGTWGETA---------------------SEEEQLQWIRRNVF--- 110 (293)
T ss_pred hhHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCccccC---------------------CHHHHHHHHHHHHH---
Confidence 44566899999999876 478889999999999998754433 33455556555543
Q ss_pred cchhhhcCchHHHHhhhc
Q 000326 132 PTACLRAGALMAVLSYLD 149 (1661)
Q Consensus 132 ~~~Il~~GgL~~LL~lLd 149 (1661)
.+.+.|++++++.+|.
T Consensus 111 --lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 111 --LLYECGGFPALWELLK 126 (293)
T ss_pred --HHHHhhhhHHHHHHHH
Confidence 5778899999998886
No 270
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=37.61 E-value=9.9e+02 Score=30.58 Aligned_cols=185 Identities=12% Similarity=0.124 Sum_probs=100.4
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhcCCCccc-c-cccccCcHHHHHHhhcCC----CCHHHHH--HHHHHHHHhhccC
Q 000326 17 ILSGLRADGEEGKQVEALTQLCEMLSIGTEESL-S-TFSVDSFAPVLVGLLNHE----SNPDIML--LAARALTHLCDVL 88 (1661)
Q Consensus 17 Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l-~-~~~~~g~vp~Lv~lL~~~----~~~eiq~--~A~raL~NLa~~~ 88 (1661)
+...+... .-..|+.|+--..+.....+-... + -+-..-..+-+-++|... +.|+..+ .+.-.|+..|..
T Consensus 16 ~~~L~~~k-~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~- 93 (698)
T KOG2611|consen 16 CLKLLKGK-RDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV- 93 (698)
T ss_pred HHHHhccc-ChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC-
Confidence 44444444 447888998888887776543222 1 111111233444555422 2344333 444555555543
Q ss_pred Ccchh--hhcccccHHHHHHHHhcCCcHH------HHHHHHHHHHHhhccCcc--hhhhcCchHHHHhhhcc-CChHHHH
Q 000326 89 PSSCA--AVVHYGAVTCFVARLLTIEYMD------LAEQSLQALKKISQEHPT--ACLRAGALMAVLSYLDF-FSTGVQR 157 (1661)
Q Consensus 89 p~~~~--~vV~~GaVp~Lv~kLL~~~~~d------l~Eqal~aL~nIS~~~~~--~Il~~GgL~~LL~lLd~-~~~~vqr 157 (1661)
|+-.. .|++ .||.|..-+-.-.+.| +.+.|-.+|.-++...+. ..+..|+++.+-|.-.- ...+-+.
T Consensus 94 pElAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~a 171 (698)
T KOG2611|consen 94 PELASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMA 171 (698)
T ss_pred hhhccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHH
Confidence 33332 3664 8999996555555666 899999999999987664 68899999998876542 1222333
Q ss_pred HHHHHHHHhcc-----CCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHH
Q 000326 158 VALSTAANMCK-----KLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIA 208 (1661)
Q Consensus 158 ~Al~aLsNlc~-----~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~ 208 (1661)
-|+-++--... ......|.. .+..+..-....+....-..|..|+.+-
T Consensus 172 lal~Vlll~~~~~~cw~e~~~~fla---li~~va~df~~~~~a~KfElc~lL~~vl 224 (698)
T KOG2611|consen 172 LALKVLLLLVSKLDCWSETIERFLA---LIAAVARDFAVLHNALKFELCHLLSAVL 224 (698)
T ss_pred HHHHHHHHHHHhcccCcCCHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33333222222 222233322 1333333334445555556677776443
No 271
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.21 E-value=1.2e+02 Score=36.38 Aligned_cols=143 Identities=15% Similarity=0.151 Sum_probs=96.1
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhh
Q 000326 57 FAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACL 136 (1661)
Q Consensus 57 ~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il 136 (1661)
.+...+..|.++ +.+....+.--|.-++...++....... -+|..++ +=+...-..|...|+.|++-|.....+.|.
T Consensus 89 al~~~l~~L~s~-dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vv-kslKNlRS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 89 ALKQALKKLSSD-DWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVV-KSLKNLRSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHhchH-HHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHH-HHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666655 3666666666666666666655554442 3556666 555666788999999999999887777777
Q ss_pred hcCchHHHHhhhcc---CC-hHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhh
Q 000326 137 RAGALMAVLSYLDF---FS-TGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEA 210 (1661)
Q Consensus 137 ~~GgL~~LL~lLd~---~~-~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~ 210 (1661)
+ .+..++.+|-. .+ .=+...|-.+|.-+.....+ ..+++.|...+++..+.+...+|.|+.+.+..
T Consensus 166 ~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~r 235 (334)
T KOG2933|consen 166 Q--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPRVRAKAALCFSRCVIR 235 (334)
T ss_pred H--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchhhhhhhhcccccccee
Confidence 7 56666665532 12 22344455555555443322 23688888889999999999999999998875
No 272
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=37.06 E-value=2.2e+02 Score=32.07 Aligned_cols=167 Identities=17% Similarity=0.150 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHH
Q 000326 28 GKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVAR 107 (1661)
Q Consensus 28 ~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~k 107 (1661)
.+.+..++.+.+-+....... ......+..++..+ ..|.+..|+.++......... ..++.+-.-
T Consensus 29 GV~~p~lr~lak~~~~~~~~~------~~~~~l~~~L~~~~-~~E~~~la~~il~~~~~~~~~--------~~~~~~~~~ 93 (213)
T PF08713_consen 29 GVRTPDLRKLAKDIYKELKLS------EELYELADELWESG-YREERYLALLILDKRRKKLTE--------EDLELLEKW 93 (213)
T ss_dssp ---HHHHHHHHHHHHHHHCTS------HHHHHHHHHHHCSS-CHHHHHHHHHHHHHCGGG--H--------HHHHHHHHC
T ss_pred CcCcHHHHHHHHHHHhhcccc------hHHHHHHHHHcCCc-hHHHHHHHHHHhHHHhhhhhH--------HHHHHHHHH
Confidence 555566666655544321110 22333444555655 588888888887654422110 123444422
Q ss_pred HhcCCcHHHHHHH-HHHHHHhhccCcchhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHH
Q 000326 108 LLTIEYMDLAEQS-LQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLT 186 (1661)
Q Consensus 108 LL~~~~~dl~Eqa-l~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~ 186 (1661)
+-..++-++.... ..+++.+...+ ....+.+...+.+.+.-.+|.++-++...... ......+..+.
T Consensus 94 ~~~~~~W~~~D~~~~~~~~~~~~~~------~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~ 161 (213)
T PF08713_consen 94 LPDIDNWATCDSLCSKLLGPLLKKH------PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIE 161 (213)
T ss_dssp CCCCCCHHHHHHHTHHHHHHHHHHH------GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHH
T ss_pred hccCCcchhhhHHHHHHHHHHHHhh------HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHH
Confidence 2234555666554 44555554322 33566677788888888999888777766655 22345677777
Q ss_pred HhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhC
Q 000326 187 NLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNH 224 (1661)
Q Consensus 187 ~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~ 224 (1661)
.++.+++.-|.....|+|..+... +++.....+..
T Consensus 162 ~~~~d~~~~vq~ai~w~L~~~~~~---~~~~v~~~l~~ 196 (213)
T PF08713_consen 162 ALLKDEEYYVQKAIGWALREIGKK---DPDEVLEFLQK 196 (213)
T ss_dssp HCTTGS-HHHHHHHHHHHHHHCTT----HHHHHHHHHH
T ss_pred HHcCCchHHHHHHHHHHHHHHHHh---CHHHHHHHHHH
Confidence 788899999999999999999996 78777777654
No 273
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=36.51 E-value=4.6e+02 Score=30.99 Aligned_cols=144 Identities=15% Similarity=0.138 Sum_probs=85.0
Q ss_pred hcCCcHHHHHHHHHHHHHhhccCcch---hh-hcCchHHHHhhhcc-------C--ChH-HHH--HHHHHHHHhccCCCC
Q 000326 109 LTIEYMDLAEQSLQALKKISQEHPTA---CL-RAGALMAVLSYLDF-------F--STG-VQR--VALSTAANMCKKLPS 172 (1661)
Q Consensus 109 L~~~~~dl~Eqal~aL~nIS~~~~~~---Il-~~GgL~~LL~lLd~-------~--~~~-vqr--~Al~aLsNlc~~~~~ 172 (1661)
.+..+++.+|+|+.-|.+--...++. +- .-|.+..+|+=+-. . +.+ ..| +|+..+--++.+ |.
T Consensus 4 ~~L~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAsh-pe 82 (262)
T PF04078_consen 4 LDLCNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASH-PE 82 (262)
T ss_dssp HHTSSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TT
T ss_pred HHhcCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcC-hH
Confidence 34457899999888888876655651 22 45777888775421 1 111 122 233333333433 33
Q ss_pred chhHHHh-CcHHHHHHhhccCC-----HHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCC
Q 000326 173 DAADFVM-EAVPLLTNLLQYHD-----AKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASL 246 (1661)
Q Consensus 173 ~~~~~v~-~~lp~L~~lL~~~D-----~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~ 246 (1661)
.....+. .+.-.|..+|+..+ ..+.-.++..++.|+.. .+++.+.-+.+.+++|-..+.|..+
T Consensus 83 tr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~--d~~evi~fLl~tEiiplcLr~me~G--------- 151 (262)
T PF04078_consen 83 TRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKT--DDPEVISFLLQTEIIPLCLRIMEFG--------- 151 (262)
T ss_dssp THHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT----HHHHHHHHCTTHHHHHHHHHHHS---------
T ss_pred HHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcC--CcHHHHHHHHhhchHHHHHHHHHhc---------
Confidence 3334444 33334444555443 34556777778888874 6788999999999999999999886
Q ss_pred ChhHHHHHHHHHHHHhcC
Q 000326 247 STPTYTGLIRLLSTCASG 264 (1661)
Q Consensus 247 s~~i~~~alr~L~nLas~ 264 (1661)
+.-.++-|..++..|-..
T Consensus 152 selSKtvAtfIlqKIL~d 169 (262)
T PF04078_consen 152 SELSKTVATFILQKILLD 169 (262)
T ss_dssp -HHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHcc
Confidence 555666677777665544
No 274
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=36.16 E-value=1.5e+02 Score=38.92 Aligned_cols=145 Identities=17% Similarity=0.146 Sum_probs=102.3
Q ss_pred cchHHHHHHHhhcC----CCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 000326 11 SGRLKKILSGLRAD----GEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCD 86 (1661)
Q Consensus 11 ~~~l~~Ll~~L~s~----~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~ 86 (1661)
-+++..+|+.+-++ +|+.+|..|.-.|.++.+.+.+-+ ..-+|.|+..|....+|-|...|.-.|+-++-
T Consensus 890 Ls~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc------~ehlpllIt~mek~p~P~IR~NaVvglgD~~v 963 (1128)
T COG5098 890 LSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFC------SEHLPLLITSMEKHPIPRIRANAVVGLGDFLV 963 (1128)
T ss_pred HhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHH------HHHHHHHHHHHhhCCCcceeccceeeccccce
Confidence 35788888888655 699999999999999988876532 23489999999855579999888877777654
Q ss_pred cCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhccCChHHHHHHHHHHHHh
Q 000326 87 VLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANM 166 (1661)
Q Consensus 87 ~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNl 166 (1661)
... ..++. .-..|. +=|.-.+.+++..|+.++.++.-... +--.|-+..+...|+..+..+-..|-..+..+
T Consensus 964 cfN----~~~de-~t~yLy-rrL~De~~~V~rtclmti~fLilagq--~KVKGqlg~ma~~L~deda~Isdmar~fft~~ 1035 (1128)
T COG5098 964 CFN----TTADE-HTHYLY-RRLGDEDADVRRTCLMTIHFLILAGQ--LKVKGQLGKMALLLTDEDAEISDMARHFFTQI 1035 (1128)
T ss_pred ehh----hhhHH-HHHHHH-HHhcchhhHHHHHHHHHHHHHHHccc--eeeccchhhhHhhccCCcchHHHHHHHHHHHH
Confidence 221 22221 123444 44556678999999999999865333 33356677777788887777777776666666
Q ss_pred ccC
Q 000326 167 CKK 169 (1661)
Q Consensus 167 c~~ 169 (1661)
+.+
T Consensus 1036 a~K 1038 (1128)
T COG5098 1036 AKK 1038 (1128)
T ss_pred Hhc
Confidence 664
No 275
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=36.01 E-value=65 Score=34.22 Aligned_cols=76 Identities=18% Similarity=0.189 Sum_probs=58.7
Q ss_pred HHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCC-HHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChh--HHHH
Q 000326 177 FVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASS-PDKLDELCNHGLVTQAATLISTSNSGGGQASLSTP--TYTG 253 (1661)
Q Consensus 177 ~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~-~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~--i~~~ 253 (1661)
...+++..|.+-|.+.++.++..|+..|-.++.+ . +....++.+..++..|+.++.... .... ++..
T Consensus 39 ~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkN---cg~~f~~ev~~~~fl~~l~~l~~~~~-------~~~~~~Vk~k 108 (140)
T PF00790_consen 39 GAKEAARALRKRLKHGNPNVQLLALTLLDALVKN---CGPRFHREVASKEFLDELVKLIKSKK-------TDPETPVKEK 108 (140)
T ss_dssp HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHH---SHHHHHHHHTSHHHHHHHHHHHHHTT-------THHHSHHHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHc---CCHHHHHHHhHHHHHHHHHHHHccCC-------CCchhHHHHH
Confidence 3567899999999999999999999999999987 5 445556666789999999998653 1222 7777
Q ss_pred HHHHHHHHh
Q 000326 254 LIRLLSTCA 262 (1661)
Q Consensus 254 alr~L~nLa 262 (1661)
++.+|..-+
T Consensus 109 ~l~ll~~W~ 117 (140)
T PF00790_consen 109 ILELLQEWA 117 (140)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776554
No 276
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=35.64 E-value=3.1e+02 Score=30.62 Aligned_cols=129 Identities=14% Similarity=0.120 Sum_probs=83.0
Q ss_pred hHHHHhhhccCChHHHHHHHHHHHHhcc-CCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHH
Q 000326 141 LMAVLSYLDFFSTGVQRVALSTAANMCK-KLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLD 219 (1661)
Q Consensus 141 L~~LL~lLd~~~~~vqr~Al~aLsNlc~-~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~ 219 (1661)
++.++.+.-..+..++..|+.++.-+.+ +.-++. .++|.|+.|..++++.+...|...+..|.+. .+..++
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~-----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK---~~s~v~ 81 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPK-----QCVPTLIALETSPNPSIRSRAYQLLKELHEK---HESLVE 81 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH-----HHHhHhhhhhCCCChHHHHHHHHHHHHHHHH---hHHHHH
Confidence 3455555556778888888888887777 333332 3899999999999999999999999999996 666666
Q ss_pred HHHhCCcHHHH--HHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcC
Q 000326 220 ELCNHGLVTQA--ATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSG 287 (1661)
Q Consensus 220 ~li~~gll~~L--v~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~ 287 (1661)
.-+..|+-... ...+.... ...........+..|-.+++++......++. .|.+.+..
T Consensus 82 ~~~~~gi~~af~~~~~l~~~~-----~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~-----~l~k~f~~ 141 (187)
T PF12830_consen 82 SRYSEGIRLAFDYQRRLSSDS-----RGARRGPPSAFLSRLYSLLRSNRKSRRKFLK-----SLLKQFDF 141 (187)
T ss_pred HHHHHHHHHHHHHHHHhcCCc-----cccccccchHHHHHHHHHHhcccHhHHHHHH-----HHHHHHHh
Confidence 66655533222 22222221 0001111556777777888866665555543 55555543
No 277
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.84 E-value=8.5e+02 Score=33.07 Aligned_cols=248 Identities=17% Similarity=0.118 Sum_probs=127.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHH-------HHHHhhcCCCCHHHHHHHHHHHHHhhccC
Q 000326 16 KILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAP-------VLVGLLNHESNPDIMLLAARALTHLCDVL 88 (1661)
Q Consensus 16 ~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp-------~Lv~lL~~~~~~eiq~~A~raL~NLa~~~ 88 (1661)
.+++.|+..+|--+++.+++.++-++..- .|..+.|.| .|..+|..-...+-+....-.|+-+.+..
T Consensus 530 a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~------nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~ 603 (978)
T KOG1993|consen 530 AFLNLLQDQNDLVVRLTTARTLKLVVDDW------NFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERV 603 (978)
T ss_pred HHHHhcCccccceeehHHHHHHHHhhhhc------cCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 34455565558888999999997555432 244444443 33344432222333444444444444333
Q ss_pred CcchhhhcccccHHHHHHHHhc--CCcHHHHHHHHHHHHHhhcc-----------------------Ccc-hhhhcCchH
Q 000326 89 PSSCAAVVHYGAVTCFVARLLT--IEYMDLAEQSLQALKKISQE-----------------------HPT-ACLRAGALM 142 (1661)
Q Consensus 89 p~~~~~vV~~GaVp~Lv~kLL~--~~~~dl~Eqal~aL~nIS~~-----------------------~~~-~Il~~GgL~ 142 (1661)
.+++.-.+ +-+-.++..|-+ ....-++-+.+.+|.|+-.. ++. .++.+.|+.
T Consensus 604 ~e~I~P~~--~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgme 681 (978)
T KOG1993|consen 604 SEHIAPYA--STIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGME 681 (978)
T ss_pred HHhhhHHH--HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHH
Confidence 33332111 111112213322 23456677777888877431 111 244555655
Q ss_pred HHHhhhccC--------------------ChHHHHHHHHHHHHhcc-CCCCchhHHHhCcHHHHHHhhccCCHHHHHHHH
Q 000326 143 AVLSYLDFF--------------------STGVQRVALSTAANMCK-KLPSDAADFVMEAVPLLTNLLQYHDAKVLEHAS 201 (1661)
Q Consensus 143 ~LL~lLd~~--------------------~~~vqr~Al~aLsNlc~-~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~ 201 (1661)
.-+..|.+. +++..+.++.++..-.- ..+.--.....+++..+..++..-..+-+...|
T Consensus 682 LW~~~L~n~~~l~p~ll~L~p~l~~~iE~ste~L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dvr~egl~avL 761 (978)
T KOG1993|consen 682 LWLTTLMNSQKLTPELLLLFPHLLYIIEQSTENLPTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDDVRNEGLQAVL 761 (978)
T ss_pred HHHHHHhcccccCHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 544444321 22334444444443221 111111123445666666666543334444444
Q ss_pred HHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHH
Q 000326 202 VCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLH-LGISGI 280 (1661)
Q Consensus 202 ~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~t~~Ll~-~gil~~ 280 (1661)
..+..+.. ....++.....++++.+..-+..+. -.+-+...-+.+++.+.-.+++....+++ .+-.+.
T Consensus 762 kiveili~----t~~il~~~~~~~~L~~lf~~I~~~~-------~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~ 830 (978)
T KOG1993|consen 762 KIVEILIK----TNPILGSLLFSPLLSRLFLSIAEND-------KYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYDI 830 (978)
T ss_pred HHHHHHHh----hhHHHHhhhcchhhHHHHHHHHhCC-------CCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHHH
Confidence 44444444 4447777778899999888775432 14567777788888887777777776666 343444
Q ss_pred HH
Q 000326 281 LK 282 (1661)
Q Consensus 281 L~ 282 (1661)
+.
T Consensus 831 ~~ 832 (978)
T KOG1993|consen 831 LI 832 (978)
T ss_pred HH
Confidence 44
No 278
>PRK14707 hypothetical protein; Provisional
Probab=34.81 E-value=2e+03 Score=33.36 Aligned_cols=384 Identities=15% Similarity=0.137 Sum_probs=207.0
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch
Q 000326 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC 92 (1661)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~ 92 (1661)
.+-..++.|..=.|......|+..|..-|.... .....+...|+--.|-.+-+.++ ..+...|+-+|.--....++-.
T Consensus 374 ~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~-~l~~~~~~Q~van~lnalsKWPd-~~~C~~aa~~lA~~la~d~~l~ 451 (2710)
T PRK14707 374 GVSSVLNALSKWPDTPVCAAAASALAEHVVDDL-ELRKGLDPQGVSNALNALAKWPD-LPICGQAVSALAGRLAHDTELC 451 (2710)
T ss_pred HHHHHHhhhhcCCCchHHHHHHHHHHHHhccCh-hhhhhcchhhHHHHHHHhhcCCc-chhHHHHHHHHHHHHhccHHHH
Confidence 355667777432377778888888888888532 22356777777777777777775 5667777777766655555444
Q ss_pred hhhcccccHHHHHHHHhcCCcHHHHHHHHHHH-HHhhccCc-chhhhcCchHHHHhhhc-cCC-hHHHHHHHHHHHHhcc
Q 000326 93 AAVVHYGAVTCFVARLLTIEYMDLAEQSLQAL-KKISQEHP-TACLRAGALMAVLSYLD-FFS-TGVQRVALSTAANMCK 168 (1661)
Q Consensus 93 ~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL-~nIS~~~~-~~Il~~GgL~~LL~lLd-~~~-~~vqr~Al~aLsNlc~ 168 (1661)
..+--.++... ++-|-.-++..+..+++.+| +.|+.+.. ..-++.-.+..+|+-|. +.+ ...-..+.|+...+..
T Consensus 452 ~~~~p~~va~~-LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~ 530 (2710)
T PRK14707 452 KALDPINVTQA-LDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVD 530 (2710)
T ss_pred hhcChHHHHHH-HHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhcc
Confidence 44332333333 33777777777777777766 44444322 12233334444555554 333 3444456666666664
Q ss_pred CCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCCh
Q 000326 169 KLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLST 248 (1661)
Q Consensus 169 ~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~ 248 (1661)
...-.......++.-.|..+-++++....+.+...|..... ..+..... ++.-=|..+++-|+.= + ..
T Consensus 531 ~~~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~---~~~~~~~~-L~aq~Vs~llNaLSKW------P--~~ 598 (2710)
T PRK14707 531 ELQLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLA---DEPQLPKD-LHRQGVVIVLNALSKW------P--DT 598 (2710)
T ss_pred chhhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhh---cchhhHHh-hhhhHHHHHHHhhccC------C--Cc
Confidence 33222222234455555555677777766666655554433 24333333 3333355555555432 1 22
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhcccCCCCCCCCCCC
Q 000326 249 PTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISL 328 (1661)
Q Consensus 249 ~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~~~ 328 (1661)
..+..++..|.--+...+.....+-..+ +..+|++- +.|..+. -.++...-|
T Consensus 599 ~aC~~Aa~~LA~~l~~~~~lr~~l~~q~----lan~lNAL---SKWP~s~----~C~~Aa~rL----------------- 650 (2710)
T PRK14707 599 AVCAEAVNALAERLVDEPDLRKELDPVD----VTNVLNAL---SKWPGTE----VCAEVARLL----------------- 650 (2710)
T ss_pred HHHHHHHHHHHHHhccChhhhhhccHHH----HHHHHhhh---hcCCCch----HHHHHHHHH-----------------
Confidence 3444444444443333333322221111 12222221 1222110 011110000
Q ss_pred CccccccccCCcccCCCCCCCCCCCCCCCCcchhhhHHHhhccCHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 000326 329 PSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIG 408 (1661)
Q Consensus 329 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~f~~~l~p~Li~vy~ss~~~~VR~~~L~~i~ 408 (1661)
...+..++.+...|-..=++.+++.++...+..+++.....|.
T Consensus 651 -------------------------------------A~rl~~~~~l~~~fnaQ~vAn~LNALSKWPe~e~Cr~Aa~~LA 693 (2710)
T PRK14707 651 -------------------------------------AGRLVGDRLLRKTFNSLDVANALNALSKWPDTPVCAAAAGGMA 693 (2710)
T ss_pred -------------------------------------HHHhhhchhhHhhcchHHHHHHHHhhhcCCCchHHHHHHHHHH
Confidence 0112233445566666778999999999999999998888876
Q ss_pred HHhhcCCHHHHHHHhhhcchHHHHHHHhhcCC-CchHHhHHHHHHHHHhhCchhhhhhHHhhcHHHHHHHHHh
Q 000326 409 KLMYFSSAEMIQSLLSVTNISSFLAGVLAWKD-PHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLIL 480 (1661)
Q Consensus 409 r~v~~~~~~~L~~~l~~~~~ss~la~il~~~d-~~l~~~aL~i~~~Ll~K~pd~f~~~f~REGV~~~I~~L~~ 480 (1661)
..+ .....|...+..+.++..|-.+=.+.+ +..-..|..|+.-|... |+ -...|.--+|-..++.|++
T Consensus 694 ~rL--a~~~~Lr~al~pQ~vAN~LNALSKWP~~~~Cr~AA~~LA~rL~~~-p~-l~~a~~aQevANaLNALSK 762 (2710)
T PRK14707 694 ERL--AADPGLRKELNPVDVANALNALSKWPRTPVCAAVASALAARVVAE-PR-LRKAFDAQQVATALNALSK 762 (2710)
T ss_pred HHH--hcChhhHhhcCHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHhcC-hh-hhhhcCHHHHHHHHHHhhc
Confidence 553 334455555666777777666544444 55566667777776532 22 2345666677777777765
No 279
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=34.53 E-value=1.2e+02 Score=32.24 Aligned_cols=81 Identities=20% Similarity=0.110 Sum_probs=62.1
Q ss_pred HHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHH
Q 000326 177 FVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIR 256 (1661)
Q Consensus 177 ~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr 256 (1661)
..++++-.|...|++.++.++-.|+..|-.++.+ ........+.+.+++..|++++.... ........++..++.
T Consensus 35 ~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkN--CG~~fh~evas~~Fl~el~kl~~~k~---~~~~~~~~Vk~kil~ 109 (139)
T cd03567 35 GPQLAVRLLAHKIQSPQEKEALQALTVLEACMKN--CGERFHSEVGKFRFLNELIKLVSPKY---LGSRTSEKVKTKIIE 109 (139)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH--cCHHHHHHHHhHHHHHHHHHHhcccc---CCCCCCHHHHHHHHH
Confidence 3567899999999999999999999999999986 24555677777899999999996421 011235778888888
Q ss_pred HHHHHh
Q 000326 257 LLSTCA 262 (1661)
Q Consensus 257 ~L~nLa 262 (1661)
+|-.-+
T Consensus 110 li~~W~ 115 (139)
T cd03567 110 LLYSWT 115 (139)
T ss_pred HHHHHH
Confidence 887655
No 280
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=33.14 E-value=73 Score=39.01 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=21.4
Q ss_pred CeEEEEECCeecCCCccHHHHHHHHh
Q 000326 1044 PKLIFTVGGKQLNRHLTIYQAIQRQL 1069 (1661)
Q Consensus 1044 ~~l~f~~~g~~l~~~~Ti~~av~~~~ 1069 (1661)
..||++.+|++|+++||+ ++|+.+.
T Consensus 291 e~lEl~C~gqvL~~~mtL-aTVr~~~ 315 (331)
T PF11816_consen 291 EWLELLCNGQVLPPDMTL-ATVRTFI 315 (331)
T ss_pred ceEEEEeCCeEcCCcCCH-HHHHHhh
Confidence 359999999999999996 7777663
No 281
>PF11081 DUF2890: Protein of unknown function (DUF2890); InterPro: IPR021304 This entry contains the 33kDa and 22kDa phosphoproteins from vertebrate adenoviruses.
Probab=32.01 E-value=95 Score=34.58 Aligned_cols=55 Identities=13% Similarity=0.281 Sum_probs=41.0
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhccCC----hHHHHHHHHHHHHHhhc-CCHHHHHHHhhh
Q 000326 371 DQPELLQQFGMDLLPVLIQIYGSSVN----SPVRHKCLSVIGKLMYF-SSAEMIQSLLSV 425 (1661)
Q Consensus 371 ~~~e~~~~f~~~l~p~Li~vy~ss~~----~~VR~~~L~~i~r~v~~-~~~~~L~~~l~~ 425 (1661)
..+...+.+=+.|||+|+.||+-+-+ +.||+..|+.+.|-+.| -...+|+.++..
T Consensus 116 ~~~~swr~lR~~I~~tLyaifqqsrG~~~~~kikNRtlrSlTRr~Lyh~~e~~l~r~l~d 175 (187)
T PF11081_consen 116 QEYRSWRELRNRIFPTLYAIFQQSRGNEQELKIKNRTLRSLTRRCLYHRGEDQLQRTLED 175 (187)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34455566667999999999977555 48999999999885555 445678877765
No 282
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=31.36 E-value=1.9e+02 Score=34.09 Aligned_cols=119 Identities=13% Similarity=0.081 Sum_probs=71.6
Q ss_pred CcHHHHHHHHHHHHHhhccCcc--hhhhcC--chHHHHhhhcc-C---ChHHHHHHHHHHHHhccCC--CCchhHHHhCc
Q 000326 112 EYMDLAEQSLQALKKISQEHPT--ACLRAG--ALMAVLSYLDF-F---STGVQRVALSTAANMCKKL--PSDAADFVMEA 181 (1661)
Q Consensus 112 ~~~dl~Eqal~aL~nIS~~~~~--~Il~~G--gL~~LL~lLd~-~---~~~vqr~Al~aLsNlc~~~--~~~~~~~v~~~ 181 (1661)
..+..+--++++|.|+-..... .++... .+..++..+.. . +..++..+++.+.|++... ...+.+....+
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~l 201 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSEL 201 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 4577788899999999776553 344332 23333333332 2 5677777888888987621 11122223345
Q ss_pred HHHHHHh-hcc-CCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHh
Q 000326 182 VPLLTNL-LQY-HDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATL 233 (1661)
Q Consensus 182 lp~L~~l-L~~-~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~L 233 (1661)
+..+... ... .|++++--++.|+++|+.. ++...+.....|+-..+...
T Consensus 202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~---~~~~~~~~~~l~~~~~~~~~ 252 (268)
T PF08324_consen 202 LSSIIEVLSREESDEEALYRLLVALGTLLSS---SDSAKQLAKSLDVKSVLSKK 252 (268)
T ss_dssp HHHHHHHCHCCHTSHHHHHHHHHHHHHHHCC---SHHHHHHCCCCTHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHhcc---ChhHHHHHHHcChHHHHHHH
Confidence 6666664 333 6999999999999999963 44444444444555444433
No 283
>KOG0170 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.28 E-value=26 Score=43.86 Aligned_cols=65 Identities=5% Similarity=-0.191 Sum_probs=57.8
Q ss_pred chhhhcccchHHHHHHHHHHHHHhcCCCchhHHhhhcCCCcccChhHHHHHHHhhhhchHHHHHH
Q 000326 1211 YEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYR 1275 (1661)
Q Consensus 1211 ~~~F~~~kl~~kl~rql~~~l~~~s~~lp~w~~~l~~~~PFlfpfe~R~~~f~~~~fg~~R~i~~ 1275 (1661)
...+.+.++++++|++|..-+..--++.+.||.-.+-.+++.++++++..|-+.|.+++.|.-..
T Consensus 128 ~~~~~~vp~sefiNsKLt~Kl~rql~d~l~v~sg~lp~w~~~L~~~cpfLfpf~Tr~~~f~~taF 192 (621)
T KOG0170|consen 128 AMCKEIVPTSEFINSKLTAKLARQLQDPLVVASGALPDWSLFLTRRCPFLFPFDTRMLYFYSTAF 192 (621)
T ss_pred hhhhcCCChHHHHHHHhhHHHHHHhcCcceeecCCCChhhhhhhhcCCeeccHHHHHHHHHHHHh
Confidence 34567899999999999999998899999999999999999999999999999999988886543
No 284
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=30.38 E-value=9.9e+02 Score=32.34 Aligned_cols=137 Identities=15% Similarity=0.160 Sum_probs=86.7
Q ss_pred cHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHh
Q 000326 100 AVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVM 179 (1661)
Q Consensus 100 aVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~ 179 (1661)
-|.-|+ .+|++.+..+.|++-..+--......+..+ +..|+.|.- .+.- ..|+.+|+.+ ..|.+ +
T Consensus 5 ~~~~l~-~~l~s~~~~~~~~~~~~~~~~~~~~~~~~l----~~~l~~y~~--~t~s-~~~~~il~~~--~~P~~-----K 69 (668)
T PF04388_consen 5 SITELL-SLLESNDLSVLEEIKALLQELLNSDREPWL----VNGLVDYYL--STNS-QRALEILVGV--QEPHD-----K 69 (668)
T ss_pred cHHHHH-HHhcCCchhhHHHHHHHHHHHhhccchHHH----HHHHHHHHh--hcCc-HHHHHHHHhc--CCccH-----H
Confidence 455677 789999999999888877544332222221 333343321 1111 1233343322 22322 2
Q ss_pred CcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHH
Q 000326 180 EAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLS 259 (1661)
Q Consensus 180 ~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~ 259 (1661)
..+..|...+... .-.-.++..|+.++.. .+..+-.|+++.+++.|+..|.... +..++..++-+|.
T Consensus 70 ~~~~~l~~~~~~~--~~Rl~~L~Ll~~~v~~---qp~~l~~i~~t~Lf~~LLk~L~~D~--------~~~~~~~al~~Li 136 (668)
T PF04388_consen 70 HLFDKLNDYFVKP--SYRLQALTLLGHFVRS---QPPWLYKILQTPLFKSLLKCLQFDT--------SITVVSSALLVLI 136 (668)
T ss_pred HHHHHHHHHHcCc--hhHHHHHHHHHHHHhc---CCchHHHHhcChhHHHHHHHHhhcc--------cHHHHHHHHHHHH
Confidence 3455666666644 4555677888888886 8999999999999999999998863 6777888888887
Q ss_pred HHhcC
Q 000326 260 TCASG 264 (1661)
Q Consensus 260 nLas~ 264 (1661)
-|.-.
T Consensus 137 mlLP~ 141 (668)
T PF04388_consen 137 MLLPH 141 (668)
T ss_pred HHhcc
Confidence 76543
No 285
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=30.27 E-value=3.6e+02 Score=39.58 Aligned_cols=150 Identities=15% Similarity=0.187 Sum_probs=91.6
Q ss_pred cCcHHHHHHhhc---CCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccC
Q 000326 55 DSFAPVLVGLLN---HESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEH 131 (1661)
Q Consensus 55 ~g~vp~Lv~lL~---~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~ 131 (1661)
..+.|.++.+.+ ...++.++.-++-...++...... ..+..+|..|+ ..+.+....-...|+.+|..|+..+
T Consensus 430 ~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds----~~qqeVv~~Lv-thi~sg~~~ev~~aL~vL~~L~~~~ 504 (1426)
T PF14631_consen 430 KDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDS----YCQQEVVGALV-THIGSGNSQEVDAALDVLCELAEKN 504 (1426)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-H----HHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccc----hhHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHhcc
Confidence 345555555432 234688888888887777776532 22234667777 4443334333468899999999988
Q ss_pred cchhhh-cCchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHh
Q 000326 132 PTACLR-AGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAE 209 (1661)
Q Consensus 132 ~~~Il~-~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~ 209 (1661)
+..+.. +.-|..+|.+|+.++..=.|....+++.++..........-.+..=.+.+.|.+.+.+...-...+...++.
T Consensus 505 ~~~l~~fa~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~GIIGav~~i~ 583 (1426)
T PF14631_consen 505 PSELQPFATFLKGILDYLDNLSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRIGIIGAVMMIK 583 (1426)
T ss_dssp HHHHHHTHHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHH
Confidence 875444 556788899999999988999999999988744322222223344455666899988777655544444443
No 286
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=30.19 E-value=2.2e+02 Score=30.25 Aligned_cols=113 Identities=17% Similarity=0.244 Sum_probs=75.1
Q ss_pred cchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 000326 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPS 90 (1661)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~ 90 (1661)
+..+..+|+..-++..+..-..+..+||+++.... .....++..|.+-|++. ++.+|+.|...|-.++..+..
T Consensus 3 ~~~~~~li~kATs~~~~~~Dw~~~l~icD~i~~~~------~~~kea~~~l~krl~~~-~~~vq~~aL~lld~lvkNcg~ 75 (140)
T PF00790_consen 3 SSSITELIEKATSESLPSPDWSLILEICDLINSSP------DGAKEAARALRKRLKHG-NPNVQLLALTLLDALVKNCGP 75 (140)
T ss_dssp CSHHHHHHHHHT-TTSSS--HHHHHHHHHHHHTST------THHHHHHHHHHHHHTTS-SHHHHHHHHHHHHHHHHHSHH
T ss_pred CChHHHHHHHHhCcCCCCCCHHHHHHHHHHHHcCC------ccHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHcCCH
Confidence 45678888887655444445566678999888762 23355688888888875 699999999988888876533
Q ss_pred -chhhhcccccHHHHHHHHhcC-CcHH---HHHHHHHHHHHhhccC
Q 000326 91 -SCAAVVHYGAVTCFVARLLTI-EYMD---LAEQSLQALKKISQEH 131 (1661)
Q Consensus 91 -~~~~vV~~GaVp~Lv~kLL~~-~~~d---l~Eqal~aL~nIS~~~ 131 (1661)
....|.....+..|. +|+.. .... |++.++..|..-+...
T Consensus 76 ~f~~ev~~~~fl~~l~-~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 76 RFHREVASKEFLDELV-KLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHTSHHHHHHHH-HHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhHHHHHHHHH-HHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 333455666677777 65553 3333 7888887776665443
No 287
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=29.74 E-value=1.1e+02 Score=32.93 Aligned_cols=80 Identities=19% Similarity=0.190 Sum_probs=60.8
Q ss_pred cccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccC
Q 000326 9 HQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVL 88 (1661)
Q Consensus 9 ~~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~ 88 (1661)
+...-++.|...|++. |+.+|+.||.-|-.+..++.......+....|+..|+.++.....++++..+...|...+...
T Consensus 34 ~~k~a~ral~KRl~~~-n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 34 GAKDCLKAIMKRLNHK-DPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred cHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence 3455677788888886 999999999998666666644333567788899999999987556888888888887777654
Q ss_pred C
Q 000326 89 P 89 (1661)
Q Consensus 89 p 89 (1661)
+
T Consensus 113 ~ 113 (144)
T cd03568 113 K 113 (144)
T ss_pred C
Confidence 4
No 288
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.45 E-value=6.2e+02 Score=34.60 Aligned_cols=185 Identities=11% Similarity=0.051 Sum_probs=102.3
Q ss_pred CHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhc
Q 000326 70 NPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLD 149 (1661)
Q Consensus 70 ~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd 149 (1661)
.+.++-.|.+.|..+.+.- .....+...+++.... ..+...+.=+--.|+..+.-+|.-.++ ..++-+..+-.
T Consensus 740 qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~l-d~LkdedsyvyLnaI~gv~~Lcevy~e-----~il~dL~e~Y~ 812 (982)
T KOG4653|consen 740 QVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIAL-DTLKDEDSYVYLNAIRGVVSLCEVYPE-----DILPDLSEEYL 812 (982)
T ss_pred cccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHH-HHhcccCceeeHHHHHHHHHHHHhcch-----hhHHHHHHHHH
Confidence 3566777777777777644 4445566667777777 666766666666777766666654443 33444555222
Q ss_pred c----CChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCC
Q 000326 150 F----FSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHG 225 (1661)
Q Consensus 150 ~----~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~g 225 (1661)
+ ..+...-..=-++.++......-.+-.....+......++.+|......+|..++.+|.. ..-.... .=+.
T Consensus 813 s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~---~a~~vsd-~~~e 888 (982)
T KOG4653|consen 813 SEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQL---LAFQVSD-FFHE 888 (982)
T ss_pred hcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHH---HhhhhhH-HHHH
Confidence 1 111111111133333333222222222223334444445556667788888888888875 2212222 1234
Q ss_pred cHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHH
Q 000326 226 LVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLL 273 (1661)
Q Consensus 226 ll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~t~~Ll 273 (1661)
++..++.+....+ +.-+...|+.+|..+-.|...-.-.++
T Consensus 889 v~~~Il~l~~~d~--------s~~vRRaAv~li~~lL~~tg~dlLpil 928 (982)
T KOG4653|consen 889 VLQLILSLETTDG--------SVLVRRAAVHLLAELLNGTGEDLLPIL 928 (982)
T ss_pred HHHHHHHHHccCC--------chhhHHHHHHHHHHHHhccchhhHHHH
Confidence 6677777777653 667888888888888776544333333
No 289
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=28.43 E-value=4.3e+02 Score=33.75 Aligned_cols=121 Identities=16% Similarity=0.169 Sum_probs=80.2
Q ss_pred cCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhcc-CCHHHHHHHHHHHHHHHhhcCC---CHHHHHHHHhCC
Q 000326 150 FFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQY-HDAKVLEHASVCLTRIAEAFAS---SPDKLDELCNHG 225 (1661)
Q Consensus 150 ~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~-~D~~v~e~A~~aLs~L~~~~~~---~~e~~~~li~~g 225 (1661)
.+..+++|.-...+..+|+..|.--.+..++++..+...-+. .-.++..+.||+++--+..... ..+.+...++.
T Consensus 279 ~y~~eV~rvlss~ll~lfk~~PsLvv~l~~~ilef~g~~~~~~~k~~l~~hlvWaIGEy~s~~~d~rct~~~i~~~fE~- 357 (459)
T PF14764_consen 279 QYQAEVRRVLSSQLLALFKRHPSLVVELSKEILEFLGSASNIHSKEELFTHLVWAIGEYLSVSYDRRCTVEQINEFFEA- 357 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHhCcHHHHHhHHHHHHHhcccccccchhHHHHHHHHHHhcccccccCCccCHHHHHHHHHH-
Confidence 457789999999999999977766556666777777666443 3578999999999965554222 25566666543
Q ss_pred cHHHHHHhhccCC--CCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHH
Q 000326 226 LVTQAATLISTSN--SGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTL 272 (1661)
Q Consensus 226 ll~~Lv~LL~~~~--~~~~~~~~s~~i~~~alr~L~nLas~s~~~t~~L 272 (1661)
++.+.--+.... ...+.+.-.+.+..-.+-+|+.||+.+.+.+-.+
T Consensus 358 -LE~llyE~~~~~~~~~~~~~~~~~rl~~~lmt~laKLAsr~~dl~pRv 405 (459)
T PF14764_consen 358 -LEALLYEVTQSRRDPSASRPSSQPRLMTVLMTALAKLASRSQDLIPRV 405 (459)
T ss_pred -HHHHHHHHhhccccccccCCCCchhHHHHHHHHHHHHHHhCHhhhHHH
Confidence 444333222211 1112334567788888899999999998877544
No 290
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=28.28 E-value=1.5e+02 Score=30.54 Aligned_cols=69 Identities=22% Similarity=0.287 Sum_probs=50.7
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHH-HHHHHHHHHhhccC
Q 000326 57 FAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLA-EQSLQALKKISQEH 131 (1661)
Q Consensus 57 ~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~-Eqal~aL~nIS~~~ 131 (1661)
++|.+.+.|+....+|.|..|--+++.++.-.+ ....++..|++.++........ .+++-+|..|++..
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~------L~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP------LSDEVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC------CcHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 578888888856678999888888888876543 2334566777677666665555 89999999998766
No 291
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=27.98 E-value=84 Score=37.00 Aligned_cols=125 Identities=18% Similarity=0.168 Sum_probs=74.7
Q ss_pred CChHHHHHHHHHHHHhccCCCCchhHHH--h-CcHHHHHHhhccC---CHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhC
Q 000326 151 FSTGVQRVALSTAANMCKKLPSDAADFV--M-EAVPLLTNLLQYH---DAKVLEHASVCLTRIAEAFASSPDKLDELCNH 224 (1661)
Q Consensus 151 ~~~~vqr~Al~aLsNlc~~~~~~~~~~v--~-~~lp~L~~lL~~~---D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~ 224 (1661)
.....+-.++++++|+...........- . .++..+..+.... ++.+...+...+.|++-.+..... ..=...
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~--~~~~~~ 199 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRS--DEEWQS 199 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS---CCHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCC--ChHHHH
Confidence 4667788899999999987655443221 1 2333333333333 678888888888888765322221 000011
Q ss_pred CcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHh
Q 000326 225 GLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDI 284 (1661)
Q Consensus 225 gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~L 284 (1661)
.++..+++.+.... .++++...++-+||+++...+.........|+...+...
T Consensus 200 ~ll~~i~~~~~~~~-------~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~ 252 (268)
T PF08324_consen 200 ELLSSIIEVLSREE-------SDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKK 252 (268)
T ss_dssp HHHHHHHHHCHCCH-------TSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHH
T ss_pred HHHHHHHHHhcccc-------CCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHH
Confidence 23556666433221 278899999999999998777665554446665555443
No 292
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=27.91 E-value=7.3e+02 Score=30.84 Aligned_cols=90 Identities=19% Similarity=0.120 Sum_probs=55.2
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcH-HHHHHHHHHHHHhhccCcchhh-
Q 000326 59 PVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYM-DLAEQSLQALKKISQEHPTACL- 136 (1661)
Q Consensus 59 p~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~-dl~Eqal~aL~nIS~~~~~~Il- 136 (1661)
.-+++=|.......++..++--|+.-|. .++.+..+..+|.+..+...+...... -+.--++.++.-++++....-+
T Consensus 24 ~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~ 102 (361)
T PF07814_consen 24 EYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLL 102 (361)
T ss_pred HHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhh
Confidence 3334444433345566666555555554 678889999999999999555455555 3444444455555666665433
Q ss_pred -hcCchHHHHhhhc
Q 000326 137 -RAGALMAVLSYLD 149 (1661)
Q Consensus 137 -~~GgL~~LL~lLd 149 (1661)
+.+.+..++.++.
T Consensus 103 ~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 103 LDRDSLRLLLKLLK 116 (361)
T ss_pred hchhHHHHHHHHhc
Confidence 5666666677776
No 293
>PF08454 RIH_assoc: RyR and IP3R Homology associated; InterPro: IPR013662 This eukaryotic domain is found in ryanodine receptors (RyR) and inositol 1, 4, 5-trisphosphate receptors (IP3R) which together form a superfamily of homotetrameric ligand-gated intracellular Ca2+ channels []. There seems to be no known function for this domain []. Also see the IP3-binding domain IPR000699 from INTERPRO and IPR003608 from INTERPRO.
Probab=27.74 E-value=1.7e+02 Score=29.91 Aligned_cols=92 Identities=17% Similarity=0.177 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHh-------CCcHHHHHHhhccC---CCCCCCCCCChhHHHHHHHHHHHH
Q 000326 192 HDAKVLEHASVCLTRIAEAFASSPDKLDELCN-------HGLVTQAATLISTS---NSGGGQASLSTPTYTGLIRLLSTC 261 (1661)
Q Consensus 192 ~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~-------~gll~~Lv~LL~~~---~~~~~~~~~s~~i~~~alr~L~nL 261 (1661)
.+.+++...+..|-.+|+| |..+....+-. .++|..++.+|..- ... -...+..+...++.+|.-+
T Consensus 5 ~~~~~~~~ilr~LQLlCEg--hn~~lQnylR~Q~~~~~s~nlV~~~~~ll~~l~~~~~~--~~~~~~~~~~q~~~tL~E~ 80 (109)
T PF08454_consen 5 QDMEIIQRILRFLQLLCEG--HNLDLQNYLRQQPNNKNSYNLVSETVDLLDSLQEFGKD--INSDNIELIIQCFDTLTEF 80 (109)
T ss_pred HHHHHHHHHHHHHHHHHCc--CCHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHH
Confidence 3566778888888999998 33333333321 25777777777541 000 0112456778888889999
Q ss_pred hcC-CHHHHHHHHHcCChHHHHHhhcC
Q 000326 262 ASG-SPLCAKTLLHLGISGILKDILSG 287 (1661)
Q Consensus 262 as~-s~~~t~~Ll~~gil~~L~~LL~~ 287 (1661)
+.| +.+....|.+..+++.+..+|..
T Consensus 81 iQGPC~eNQ~~l~~s~~~~~i~~lL~~ 107 (109)
T PF08454_consen 81 IQGPCIENQIALANSKFLDIINDLLSK 107 (109)
T ss_pred HcCCCHHhHHHHHHccHHHHHHHHHhh
Confidence 999 88888999999999999998863
No 294
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=27.65 E-value=4.4e+02 Score=31.02 Aligned_cols=65 Identities=17% Similarity=0.134 Sum_probs=45.6
Q ss_pred hhcccccHHHHHHHHhcCCcH---HHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCC
Q 000326 94 AVVHYGAVTCFVARLLTIEYM---DLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKL 170 (1661)
Q Consensus 94 ~vV~~GaVp~Lv~kLL~~~~~---dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~ 170 (1661)
.....+++|.++..++..... .+...++..|-+|+.......- +......|-+|+.++.-+.+..
T Consensus 161 iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~------------~~~~d~~qVHAlNiLr~if~ds 228 (255)
T PF10350_consen 161 ITRRSAGLPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHE------------DEKSDLPQVHALNILRAIFRDS 228 (255)
T ss_pred cccccCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCccccc------------ccccchHHHHHHHHHHHHHhcc
Confidence 455788999999888887654 6888999999999987654111 1111356777887777777643
No 295
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=27.65 E-value=2.3e+02 Score=39.57 Aligned_cols=161 Identities=19% Similarity=0.175 Sum_probs=104.8
Q ss_pred chHHHHHHHhh----cCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcc
Q 000326 12 GRLKKILSGLR----ADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDV 87 (1661)
Q Consensus 12 ~~l~~Ll~~L~----s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~ 87 (1661)
+++..+|..+- .-+||.+|..|.-+|+++...+.+- -+.-+|.|+.+|....+|-|...+.-+++-++-.
T Consensus 918 g~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~f------ces~l~llftimeksp~p~IRsN~VvalgDlav~ 991 (1251)
T KOG0414|consen 918 GRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEF------CESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVR 991 (1251)
T ss_pred HHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHH------HHHHHHHHHHHHhcCCCceeeecchheccchhhh
Confidence 45666666653 2348999999999999988876431 2345899999998666788888888888887765
Q ss_pred CCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhccCChHHHHHHHHHHHHhc
Q 000326 88 LPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMC 167 (1661)
Q Consensus 88 ~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc 167 (1661)
-|.-... --+.|- .-|.-....+++.|+-+|.++.-. ++|--.|-+.-+...|...+..+...|=...-.+.
T Consensus 992 fpnlie~-----~T~~Ly-~rL~D~~~~vRkta~lvlshLILn--dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 992 FPNLIEP-----WTEHLY-RRLRDESPSVRKTALLVLSHLILN--DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred cccccch-----hhHHHH-HHhcCccHHHHHHHHHHHHHHHHh--hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 5532222 234555 566777899999999999998653 34555677777777777666555444433333333
Q ss_pred cCCCCchhHHHhCcHHHHHHhhcc
Q 000326 168 KKLPSDAADFVMEAVPLLTNLLQY 191 (1661)
Q Consensus 168 ~~~~~~~~~~v~~~lp~L~~lL~~ 191 (1661)
.+. ..+-+.+|-+...|..
T Consensus 1064 ~k~-----n~iynlLPdil~~Ls~ 1082 (1251)
T KOG0414|consen 1064 SKG-----NTIYNLLPDILSRLSN 1082 (1251)
T ss_pred hcc-----cchhhhchHHHHhhcc
Confidence 221 2344455555444443
No 296
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=27.47 E-value=97 Score=39.50 Aligned_cols=60 Identities=10% Similarity=0.189 Sum_probs=50.4
Q ss_pred CcccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCC
Q 000326 8 SHQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHES 69 (1661)
Q Consensus 8 ~~~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~ 69 (1661)
...+--|+.|++.++.++|+..|..+...|..++..+. .....|.+.+|..|+.+|..+.
T Consensus 308 ~KLnPiIrpLMdSIK~Een~~LQ~rsA~slA~Li~~~~--~rkp~PndKIvkNLc~flC~D~ 367 (441)
T PF12054_consen 308 KKLNPIIRPLMDSIKREENELLQQRSAESLARLIQLCV--DRKPCPNDKIVKNLCTFLCVDT 367 (441)
T ss_pred CCccHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHh--CCCCCCcHHHHHHHhhhhccCc
Confidence 34566788899999998899999999999999999887 2346888899999999997653
No 297
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=27.46 E-value=1.2e+03 Score=29.52 Aligned_cols=218 Identities=10% Similarity=0.098 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcC---------------CCCHHHHHHHHH--------HHHHh
Q 000326 28 GKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNH---------------ESNPDIMLLAAR--------ALTHL 84 (1661)
Q Consensus 28 ~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~---------------~~~~eiq~~A~r--------aL~NL 84 (1661)
+++.++|.+|.+.+.... ......+.+++.+++++.. .++.+.-.+.+| .|..+
T Consensus 41 e~K~~~L~el~~~v~~~~---~~~~l~e~~~~~i~~Mi~~NifR~lP~~~~~~~~~~~d~~~~e~~WpHL~~vY~il~~~ 117 (409)
T PF01603_consen 41 EIKRQTLNELVDYVSNSR---IQGILTEPVYPEIFNMISANIFRPLPPIPNPSFDPDDDEPFLEPSWPHLQLVYEILLRF 117 (409)
T ss_dssp HSHHHHHHHHHHHHCSSS-----SSS-TTSHHHHHHHHHHHH-S-----SS--S-GGG------TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcc---ccccCCHHHHHHHHHHHHHhccCCCCCcccccCCccccccccccccHhHHHHHHHHHHH
Confidence 457889999999887653 1235567778888887751 011223334444 23333
Q ss_pred hccCCc-chhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc--hhhhcCchHHHHhhhccC-ChHHHHHHH
Q 000326 85 CDVLPS-SCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT--ACLRAGALMAVLSYLDFF-STGVQRVAL 160 (1661)
Q Consensus 85 a~~~p~-~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~--~Il~~GgL~~LL~lLd~~-~~~vqr~Al 160 (1661)
....+. .....++...|-.|+ .|+.++++.=+++....|-+|-+.... ..++......++.|++.. .......++
T Consensus 118 i~~~~~~~~~~~i~~~fi~~Ll-~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elL 196 (409)
T PF01603_consen 118 IESPPFDPAKKYIDQKFIKKLL-ELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELL 196 (409)
T ss_dssp HTSTT--CCTTTS-HHHHHHHH-HTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHH
T ss_pred HHCccccHHHHHcCHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHH
Confidence 332221 133467777888999 899999999999999999999876654 456666666777777643 344555667
Q ss_pred HHHHHhccCCC-CchhHHHhCcHHHHHHhhccCC-HHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCC
Q 000326 161 STAANMCKKLP-SDAADFVMEAVPLLTNLLQYHD-AKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSN 238 (1661)
Q Consensus 161 ~aLsNlc~~~~-~~~~~~v~~~lp~L~~lL~~~D-~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~ 238 (1661)
.++..+..+-. +-..++..-..-.|..|..... ...-.+-..|+...+.. ++.....++ ..|+..
T Consensus 197 eil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~k---dp~l~~~~i-----~~llk~----- 263 (409)
T PF01603_consen 197 EILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEK---DPSLAEPVI-----KGLLKH----- 263 (409)
T ss_dssp HHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH----GGGHHHHH-----HHHHHH-----
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh---CchhHHHHH-----HHHHHh-----
Confidence 77777776532 1111111112222333333332 22334455566666653 444433333 222222
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHhcCCH
Q 000326 239 SGGGQASLSTPTYTGLIRLLSTCASGSP 266 (1661)
Q Consensus 239 ~~~~~~~~s~~i~~~alr~L~nLas~s~ 266 (1661)
++..+..-....+.-|..|+..-+
T Consensus 264 ----WP~t~s~Kev~FL~el~~il~~~~ 287 (409)
T PF01603_consen 264 ----WPKTNSQKEVLFLNELEEILEVLP 287 (409)
T ss_dssp ----S-SS-HHHHHHHHHHHHHHHTT--
T ss_pred ----CCCCCchhHHHHHHHHHHHHHhcC
Confidence 344456666677777877776543
No 298
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=26.76 E-value=9.5e+02 Score=29.32 Aligned_cols=215 Identities=18% Similarity=0.079 Sum_probs=105.7
Q ss_pred ccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc
Q 000326 54 VDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT 133 (1661)
Q Consensus 54 ~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~ 133 (1661)
...++..|+.++..|.|......+..+|..=+... ..-+...++..+. +=+....+-++..-+.+++.+.....+
T Consensus 20 s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~-kGl~~kk~~vR~~w~~~~~~~~~~~~~ 94 (339)
T PF12074_consen 20 SSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFK-KGLKDKKPPVRRAWLLCLGEALWESPN 94 (339)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHH-HHhcCCCCcHHHHHHHHHHHHHhhccC
Confidence 34456777777777766665555555554443322 1222334566666 444444455777777777777652111
Q ss_pred ---hhhhcCchHHHHhhhc----cCChHHHHH---HHHHHHHhccCCCCchhHH---HhCc-----HHH-HH--Hhhcc-
Q 000326 134 ---ACLRAGALMAVLSYLD----FFSTGVQRV---ALSTAANMCKKLPSDAADF---VMEA-----VPL-LT--NLLQY- 191 (1661)
Q Consensus 134 ---~Il~~GgL~~LL~lLd----~~~~~vqr~---Al~aLsNlc~~~~~~~~~~---v~~~-----lp~-L~--~lL~~- 191 (1661)
.-.-...++.|++.++ +.....|.. ++.++.-++.. ....... .... =|. |. ++++.
T Consensus 95 ~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~-~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl 173 (339)
T PF12074_consen 95 SDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSW-KLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL 173 (339)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccc-cchhhhhhhhhhhhhccCCCcchhcCHHHHhcc
Confidence 2222346677777775 222232311 11111111110 0001000 0000 000 00 11222
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHH
Q 000326 192 HDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKT 271 (1661)
Q Consensus 192 ~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~t~~ 271 (1661)
.+.+-..-.+.++..+... ..+....-....+-..++.++.+.. ++..++..++.+|..+...++..
T Consensus 174 ~~~~d~~w~~~al~~~~~~---~~~~~~~~~~~~~~~a~i~ll~s~~-------~~~~vR~~A~~~l~~l~~~~~~~--- 240 (339)
T PF12074_consen 174 ASEEDLCWLLRALEALLSD---HPSELSSDKSSAWAQAFIYLLCSSN-------VSWKVRRAALSALKKLYASNPEL--- 240 (339)
T ss_pred CCHhHHHHHHHHHHHHHhc---chhhhhhhHHHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHhChHH---
Confidence 3334444445555555554 2222211112335677888887762 46789999999999999988884
Q ss_pred HHHcCChHHHHHhhcCC
Q 000326 272 LLHLGISGILKDILSGS 288 (1661)
Q Consensus 272 Ll~~gil~~L~~LL~~~ 288 (1661)
+...++.-|...|...
T Consensus 241 -l~~~li~~l~~~l~~~ 256 (339)
T PF12074_consen 241 -LSKSLISGLWKWLSSS 256 (339)
T ss_pred -HHHHHHHHHHHHHHhc
Confidence 3333444566666543
No 299
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=26.74 E-value=3e+02 Score=28.93 Aligned_cols=77 Identities=10% Similarity=0.110 Sum_probs=60.8
Q ss_pred HhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHH-HHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHH
Q 000326 178 VMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPD-KLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIR 256 (1661)
Q Consensus 178 v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e-~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr 256 (1661)
.++++..|...|++.++.++..|+..|-.++.+ ... ....+.+...+..|+.++.... ..+..++..++.
T Consensus 35 ~k~a~raL~krl~~~n~~vql~AL~lLd~~vkN---cg~~f~~~i~s~~fl~~l~~l~~~~~------~~~~~Vk~kil~ 105 (133)
T cd03561 35 PKEAARAIRKKIKYGNPHVQLLALTLLELLVKN---CGKPFHLQVADKEFLLELVKIAKNSP------KYDPKVREKALE 105 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh---CChHHHHHHhhHHHHHHHHHHhCCCC------CCCHHHHHHHHH
Confidence 467899999999999999999999999999986 444 4455555588888999997631 236788999998
Q ss_pred HHHHHhc
Q 000326 257 LLSTCAS 263 (1661)
Q Consensus 257 ~L~nLas 263 (1661)
+|...+.
T Consensus 106 ll~~W~~ 112 (133)
T cd03561 106 LILAWSE 112 (133)
T ss_pred HHHHHHH
Confidence 8887653
No 300
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=26.69 E-value=1.9e+02 Score=32.30 Aligned_cols=74 Identities=22% Similarity=0.288 Sum_probs=52.4
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCC
Q 000326 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLP 89 (1661)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p 89 (1661)
-++-++++|+.. +.-..+.|.+.+.++|.....+.+--+ .-.+|++|..-|+.. ++++...+..+|..|+...+
T Consensus 39 ~Lpif~dGL~Et-~~Py~flA~~g~~dll~~~~~~kilPv-lPqLI~plk~AL~tr-~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 39 YLPIFFDGLRET-EHPYRFLARQGIKDLLERGGGEKILPV-LPQLIIPLKRALNTR-DPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred HHHHHHhhhhcc-CccHHHHHHHHHHHHHHhcchhHHHHH-HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhhh
Confidence 467889999987 445567888888888887333332111 224677777888766 59999999999999965544
No 301
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=26.68 E-value=2.8e+02 Score=27.89 Aligned_cols=96 Identities=18% Similarity=0.118 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHH
Q 000326 28 GKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVAR 107 (1661)
Q Consensus 28 ~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~k 107 (1661)
++++.|+..+---+..+--..-+-.....++..|++.++.+..+ .+.++.-.|..++. .|.....+.+-|++..|- +
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~-~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~-k 78 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVP-MKEEVLALLLRLLK-SPYAAQILRDIGAVRFLS-K 78 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHH-H
Confidence 45666666654444332110001234567899999999987644 66666667777665 455667788999999877 8
Q ss_pred HhcCCcHHHHHHHHHHHHH
Q 000326 108 LLTIEYMDLAEQSLQALKK 126 (1661)
Q Consensus 108 LL~~~~~dl~Eqal~aL~n 126 (1661)
|-..-.++++.++-..|.+
T Consensus 79 lr~~~~~~~~~~id~il~~ 97 (98)
T PF14726_consen 79 LRPNVEPNLQAEIDEILDQ 97 (98)
T ss_pred HHhcCCHHHHHHHHHHHhc
Confidence 9888888887776665544
No 302
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=26.55 E-value=6.7e+02 Score=33.71 Aligned_cols=168 Identities=15% Similarity=0.109 Sum_probs=103.6
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcC-------CcHHHHHHHHHHHHHhhc
Q 000326 57 FAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTI-------EYMDLAEQSLQALKKISQ 129 (1661)
Q Consensus 57 ~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~-------~~~dl~Eqal~aL~nIS~ 129 (1661)
++.+-..+......|+ ..|+++|.-+..--++.+ + .|+++-+.+-|-.+ .++--+|-|+..|.+|..
T Consensus 372 yirry~df~d~g~spd--laal~fl~~~~sKrke~T--f--qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s 445 (970)
T COG5656 372 YIRRYYDFFDNGLSPD--LAALFFLIISKSKRKEET--F--QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKS 445 (970)
T ss_pred HHHHhcchhcCCCChh--HHHHHHHHHHhcccchhh--h--hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHH
Confidence 3333344443333333 356677776665433222 2 37888888544222 224456677777777765
Q ss_pred --c--Ccc-hhhhcCchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHH
Q 000326 130 --E--HPT-ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCL 204 (1661)
Q Consensus 130 --~--~~~-~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aL 204 (1661)
. ++- .+++.=.+..++-.+.....-++..|+-+++.+ ..+.++......+.....+.+++.+--|.-.|..|+
T Consensus 446 ~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~--eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAl 523 (970)
T COG5656 446 FITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTI--EEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALAL 523 (970)
T ss_pred HhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHH--HHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHH
Confidence 1 221 355554555555555655566777888888877 444555556677888888888888888888899999
Q ss_pred HHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccC
Q 000326 205 TRIAEAFASSPDKLDELCNHGLVTQAATLISTS 237 (1661)
Q Consensus 205 s~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~ 237 (1661)
..+..+ ++....+.+-+.+.+-+||.-.
T Consensus 524 q~fi~~-----~q~h~k~sahVp~tmekLLsLS 551 (970)
T COG5656 524 QFFIFN-----EQSHEKFSAHVPETMEKLLSLS 551 (970)
T ss_pred HHHHhc-----hhhhHHHHhhhhHHHHHHHHhc
Confidence 888863 2566666666666666666543
No 303
>PRK14707 hypothetical protein; Provisional
Probab=26.27 E-value=2.7e+03 Score=32.17 Aligned_cols=340 Identities=17% Similarity=0.177 Sum_probs=175.6
Q ss_pred chHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 000326 12 GRLKKILSGLRA-DGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPS 90 (1661)
Q Consensus 12 ~~l~~Ll~~L~s-~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~ 90 (1661)
++.-.|+.+..| ..+..-..+|+..|..-|...+ .+...+....+.-.|-.+-+..++.+.+..+.+..+.++... .
T Consensus 120 ~~~~al~~n~~sk~~~~~~c~~a~a~i~~~~~~~~-~~~~~l~~~~~~lllNafSKw~~~~~c~~aa~~la~~~~~~d-~ 197 (2710)
T PRK14707 120 GYPSALFLNAFSKNLDSGRCERAVARLARHLRRED-KARQTLNAQNISLALNAFSKWSDNPDCQAVAPRFAALVASDD-R 197 (2710)
T ss_pred chhHHHHHHHHhcCCCchHHHHHHHHHHHHhcccc-chhhhhccccHHHHHHHhhcCCCCchHHHHHHHHHHHhcCCh-h
Confidence 344445555433 3466778888888877776543 222334443333334444466778889888888878777643 2
Q ss_pred chhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHH-HhhccCcc-hhhhcCchHHHHhhhc-cCChHHHHHHHHHH-HHh
Q 000326 91 SCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALK-KISQEHPT-ACLRAGALMAVLSYLD-FFSTGVQRVALSTA-ANM 166 (1661)
Q Consensus 91 ~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~-nIS~~~~~-~Il~~GgL~~LL~lLd-~~~~~vqr~Al~aL-sNl 166 (1661)
....+ +.-.|-.+++-+-.-++..-.++++.+|. -++.+..- .-++.-+|..+|+-|. ..+..+-++|+.++ -.+
T Consensus 198 ~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl 276 (2710)
T PRK14707 198 LRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNELKPQELGNALNALSKWADTPVCAAAASALAERL 276 (2710)
T ss_pred hhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 33333 44455566657777666555556666664 44554322 4555667777777775 44555555554444 455
Q ss_pred ccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHH-HHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCC
Q 000326 167 CKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLT-RIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQAS 245 (1661)
Q Consensus 167 c~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs-~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~ 245 (1661)
.....-.....-.++--.|..+-+..|..|...|...|. +|.+ +++..+.+- .--+..+++-|+. ++
T Consensus 277 ~~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~----d~~l~~~~~-~~~~~~~LNalsK------Wp- 344 (2710)
T PRK14707 277 VDDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLAD----DPELCKALN-ARGLSTALNALSK------WP- 344 (2710)
T ss_pred hhhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhc----cHhhhhccc-hHHHHHHHHHhhc------CC-
Confidence 543221111112234444555556778777776666655 4444 565554433 2223344444432 11
Q ss_pred CChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhcccCCCCCCCC
Q 000326 246 LSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGT 325 (1661)
Q Consensus 246 ~s~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~ 325 (1661)
+..++..+...|..=..-.+++.+.|=-.|+..+|--+ +.|.-... --.
T Consensus 345 -d~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNal-------sKWp~~~~------c~~----------------- 393 (2710)
T PRK14707 345 -DNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNAL-------SKWPDTPV------CAA----------------- 393 (2710)
T ss_pred -CchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhh-------hcCCCchH------HHH-----------------
Confidence 23355555555554444444443333222222221111 11211000 000
Q ss_pred CCCCccccccccCCcccCCCCCCCCCCCCCCCCcchhhhHHHhhccCHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHH
Q 000326 326 ISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLS 405 (1661)
Q Consensus 326 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~f~~~l~p~Li~vy~ss~~~~VR~~~L~ 405 (1661)
....-...+.+++++...|--+=+..+++.++...+..|++....
T Consensus 394 -----------------------------------aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~ 438 (2710)
T PRK14707 394 -----------------------------------AASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVS 438 (2710)
T ss_pred -----------------------------------HHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHH
Confidence 001111223355666666666667778889999999999998888
Q ss_pred HHHHHhhcCCHHHHHHHhhhcchHHHHHH
Q 000326 406 VIGKLMYFSSAEMIQSLLSVTNISSFLAG 434 (1661)
Q Consensus 406 ~i~r~v~~~~~~~L~~~l~~~~~ss~la~ 434 (1661)
++.--+- ....|+..+....++..|-.
T Consensus 439 ~lA~~la--~d~~l~~~~~p~~va~~Lna 465 (2710)
T PRK14707 439 ALAGRLA--HDTELCKALDPINVTQALDA 465 (2710)
T ss_pred HHHHHHh--ccHHHHhhcChHHHHHHHHH
Confidence 8765442 33334444444444444433
No 304
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=26.19 E-value=1e+02 Score=32.80 Aligned_cols=46 Identities=11% Similarity=0.126 Sum_probs=41.1
Q ss_pred hhcCCCchHHhHHHHHHHHHhhCchhhhhhHHhhcHHHHHHHHHhc
Q 000326 436 LAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILA 481 (1661)
Q Consensus 436 l~~~d~~l~~~aL~i~~~Ll~K~pd~f~~~f~REGV~~~I~~L~~~ 481 (1661)
|.++++.+.+.||.+.+.+++.+...|+..+.+...++++-+|..+
T Consensus 47 l~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~ 92 (139)
T cd03567 47 IQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSP 92 (139)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhcc
Confidence 3567778889999999999999999999999999999999999853
No 305
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=25.94 E-value=1.1e+03 Score=27.37 Aligned_cols=181 Identities=15% Similarity=0.168 Sum_probs=109.3
Q ss_pred CHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHH-------hhcCC--CCHHH-HHHHHHHHHHhhccCCcchhhh
Q 000326 26 EEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVG-------LLNHE--SNPDI-MLLAARALTHLCDVLPSSCAAV 95 (1661)
Q Consensus 26 D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~-------lL~~~--~~~ei-q~~A~raL~NLa~~~p~~~~~v 95 (1661)
++..| |+.+|.+-......-.+..-...|+...|++ +|+.. ++++. ..-.+-.|..+....|+....+
T Consensus 60 ~~kEq--aL~EL~rkreq~~dlAl~lW~s~gvmt~LLqEiisvYpiL~p~~l~~~~snRvcnaL~lLQclaShPetk~~F 137 (315)
T COG5209 60 NPKEQ--ALDELFRKREQSPDLALELWRSDGVMTFLLQEIISVYPILSPSKLDERESNRVCNALNLLQCLASHPETKKVF 137 (315)
T ss_pred CHHHH--HHHHHHHHHhcCCCeeeeehhccchHHHHHHHHHhhhhccCccccCchhhhHHHHHHHHHHHHhcCcchheee
Confidence 45555 8888888887765433333334443333322 22211 11221 2222333444445567777777
Q ss_pred cccccHHHHHHHHhc-----CCcHHHHHHHHHHHHHhhccCcc----hhhhcCchHHHHhhhccCChHHHHHHHHHHHHh
Q 000326 96 VHYGAVTCFVARLLT-----IEYMDLAEQSLQALKKISQEHPT----ACLRAGALMAVLSYLDFFSTGVQRVALSTAANM 166 (1661)
Q Consensus 96 V~~GaVp~Lv~kLL~-----~~~~dl~Eqal~aL~nIS~~~~~----~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNl 166 (1661)
+++. ||.++-..|. +...-++-.++-+++.+-.+... ..+....++.|+.+++..+.-.|..|+.++--+
T Consensus 138 l~Ah-iplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSktvaifI~qki 216 (315)
T COG5209 138 LDAH-IPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSKTVAIFIFQKI 216 (315)
T ss_pred eecc-cceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 7765 3433323332 23466777788888888776664 456778999999999988777777788777655
Q ss_pred ccCCC--------CchhHHHhCcHHHHHHhh-ccCCHHHHHHHHHHHHHHHh
Q 000326 167 CKKLP--------SDAADFVMEAVPLLTNLL-QYHDAKVLEHASVCLTRIAE 209 (1661)
Q Consensus 167 c~~~~--------~~~~~~v~~~lp~L~~lL-~~~D~~v~e~A~~aLs~L~~ 209 (1661)
..+.. .+.|..+..++..++..+ ......++..++.|-.++++
T Consensus 217 l~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd 268 (315)
T COG5209 217 LGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSD 268 (315)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecC
Confidence 44322 233444555666555554 44567899999999999998
No 306
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=25.52 E-value=9.6e+02 Score=29.24 Aligned_cols=59 Identities=5% Similarity=0.120 Sum_probs=41.6
Q ss_pred HhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCC-CHHHHHHHHhCC---cHHHHHHhhcc
Q 000326 178 VMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFAS-SPDKLDELCNHG---LVTQAATLIST 236 (1661)
Q Consensus 178 v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~-~~e~~~~li~~g---ll~~Lv~LL~~ 236 (1661)
...++..+.--++|++.+|.+.++.++..|...+.. +++....+...- ++..+...|..
T Consensus 163 f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD 225 (319)
T PF08767_consen 163 FKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTD 225 (319)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 445667777778999999999999999999887544 556666666553 44444444433
No 307
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=24.03 E-value=2e+03 Score=29.76 Aligned_cols=288 Identities=17% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhcC----------CCcccccccccC---------------------cHHHHH
Q 000326 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIG----------TEESLSTFSVDS---------------------FAPVLV 62 (1661)
Q Consensus 14 l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~----------~~~~l~~~~~~g---------------------~vp~Lv 62 (1661)
++.||...... -....++|+..|.+++... .++++..++... ||..|.
T Consensus 232 lEtLls~c~KK-sk~~a~~~l~~LkdlfI~~LLPdRKLk~f~qrp~~~l~~~~~~~k~Ll~WyfE~~LK~ly~rfievLe 310 (988)
T KOG2038|consen 232 LETLLSSCKKK-SKRDALQALPALKDLFINGLLPDRKLKYFSQRPLLELTNKRLRDKILLMWYFEHELKILYFRFIEVLE 310 (988)
T ss_pred HHHHHHHHhhh-hHHHHHHHHHHHHHHHHhccCcchhhHHHhhChhhhccccccccceehHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcch-hhhcCch
Q 000326 63 GLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTA-CLRAGAL 141 (1661)
Q Consensus 63 ~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~-Il~~GgL 141 (1661)
.+-.+.- +++...|...+++|..+-|++-..++. .|| .=+..+.-.++-.|...|++|.+.||++ ++-.+.|
T Consensus 311 ~lS~D~L-~~vk~raL~ti~~lL~~kPEqE~~LL~-----~lV-NKlGDpqnKiaskAsylL~~L~~~HPnMK~Vvi~EI 383 (988)
T KOG2038|consen 311 ELSKDPL-EEVKKRALKTIYDLLTNKPEQENNLLV-----LLV-NKLGDPQNKIASKASYLLEGLLAKHPNMKIVVIDEI 383 (988)
T ss_pred HHccccH-HHHHHHHHHHHHHHHhCCcHHHHHHHH-----HHH-HhcCCcchhhhhhHHHHHHHHHhhCCcceeehHHHH
Q ss_pred HHHHhhhccCChHHHHHHHHHHHHhcc--CCCCchhHHHhCcHHHHHHhhccCCHHHH----------------------
Q 000326 142 MAVLSYLDFFSTGVQRVALSTAANMCK--KLPSDAADFVMEAVPLLTNLLQYHDAKVL---------------------- 197 (1661)
Q Consensus 142 ~~LL~lLd~~~~~vqr~Al~aLsNlc~--~~~~~~~~~v~~~lp~L~~lL~~~D~~v~---------------------- 197 (1661)
..++ +=.+.+...+-.|+..|..+.- ......-..|.--+-.+..++...|.+-.
T Consensus 384 er~~-FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi~iYF~lFk~l~~~~~~d~~k~~k~~~k~kks~k~~k~e~~~ 462 (988)
T KOG2038|consen 384 ERLA-FRPNVSERAHYYAVIFLNQMKLSHKESDVANRLISIYFSLFKTLVGKKDKDNRKDDKGAAKKKKSNKKDKKEEVS 462 (988)
T ss_pred HHHH-cccCccccceeehhhhhhhhHhccchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhcccccccchhhhhc
Q ss_pred -----HHHHHHHHHHHhh----cCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHH
Q 000326 198 -----EHASVCLTRIAEA----FASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLC 268 (1661)
Q Consensus 198 -----e~A~~aLs~L~~~----~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~ 268 (1661)
+---..|+.|..| |......-+.+-.+ ++.|..+..+. +.++-.++|.+|-.+.....-+
T Consensus 463 ~e~~~e~nsrllSAlLTGvNRAfPfaq~~ddk~~~~--~~tLFkl~Hss---------NFNTsVQaLmLlfQvs~~~~~v 531 (988)
T KOG2038|consen 463 TESPIELNSRLLSALLTGVNRAFPFAQTADDKLEEQ--MKTLFKLTHSS---------NFNTSVQALMLLFQVSKKNDYV 531 (988)
T ss_pred ccchhhhhHHHHHHHHhcccccCCcccCchHHHHHH--hHHHHHHHhhc---------ccchhHHHHHHHHHHHHhhhhh
Q ss_pred HHHHHHcCChHHHHHhhcCCCcccccccccc-------------cCCCHHHHHHHHHHhcccCCCCCCCCC
Q 000326 269 AKTLLHLGISGILKDILSGSGVSANSAVPPA-------------LSRPAEQIFEIVNLANELLPPLPQGTI 326 (1661)
Q Consensus 269 t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i-------------~~~~~~qi~~vi~li~~LLP~L~~~~~ 326 (1661)
.....+ .|+.-|-......+...+.. +.|-..-+..++...+...|+++.|++
T Consensus 532 SDRyY~-----aLY~kLLdP~l~~sSKq~m~LnLlykslK~D~ni~RV~AFvKRlLQVa~~q~P~~i~G~l 597 (988)
T KOG2038|consen 532 SDRYYR-----ALYRKLLDPRLMNSSKQAMFLNLLYKSLKEDINIQRVRAFVKRLLQVAVQQQPPFICGIL 597 (988)
T ss_pred HHHHHH-----HHHHHhcCcccCchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCchhHhHH
No 308
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=23.92 E-value=7e+02 Score=33.09 Aligned_cols=197 Identities=15% Similarity=0.140 Sum_probs=102.8
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhh
Q 000326 57 FAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACL 136 (1661)
Q Consensus 57 ~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il 136 (1661)
+.-.++.+++.-.+.++-....+.+++++-....+....- -.|.+.+ .+-......++.+|.-+|-+|+......++
T Consensus 242 Yl~s~l~Ll~~~t~te~~~~~L~~l~~l~~~~~~f~k~lk--~liK~~V-~vWstge~~~rv~Afl~l~~l~~~~~~~~l 318 (661)
T KOG2256|consen 242 YLGSSLHLLNQLTDTEVLAFTLRHLTVLVPFLATFPKLLK--KLIKAVV-HVWSTGEESLRVLAFLCLIDLCRKFKSTCL 318 (661)
T ss_pred HhHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHh-eeeccCCcchhhHHHHHHHHHHHHhhhHHH
Confidence 3444555555444566666666666665542221111111 1344555 555566788999999999999987776555
Q ss_pred hcCchHHHHhhhccC---Ch---HHHHHHHHHHHHhccCCCC----chhHHHhCcHHHHHHhhccCCHHHHHHH------
Q 000326 137 RAGALMAVLSYLDFF---ST---GVQRVALSTAANMCKKLPS----DAADFVMEAVPLLTNLLQYHDAKVLEHA------ 200 (1661)
Q Consensus 137 ~~GgL~~LL~lLd~~---~~---~vqr~Al~aLsNlc~~~~~----~~~~~v~~~lp~L~~lL~~~D~~v~e~A------ 200 (1661)
..---...+.|+.+. +. ....---|++.+||.-.+. .-|..++..--.|.+.+.....+-....
T Consensus 319 ~~vlk~mY~afv~nsk~~~~~tl~~i~Fl~~slvEL~~ld~~~~Yq~aF~yIrQLAihLRnam~~k~K~s~~~VYnWqfi 398 (661)
T KOG2256|consen 319 DPVLKTMYLAFVRNSKFVTVNTLPLINFLQNSLVELLGLDLQVSYQHAFVYIRQLAIHLRNAMITKNKESVQSVYNWQYV 398 (661)
T ss_pred HHHHHHHHHHHHHhCCCCCCcccchhHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 544455566666432 11 1222234667777774432 2345566655566666665554433211
Q ss_pred ----HHH--HHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCH
Q 000326 201 ----SVC--LTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSP 266 (1661)
Q Consensus 201 ----~~a--Ls~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~ 266 (1661)
.|+ |+. +.+ ....++.++ .-+++.++..+.-. |+.-=......||+.|.+||+.+-
T Consensus 399 ~cL~lW~rvisf-~~~---~~s~lq~Lv-YpLvQvi~GvirLi-----pT~qy~PLRlhcir~Li~Ls~ssg 460 (661)
T KOG2256|consen 399 HCLDLWLRVISF-ANG---SASQLQPLV-YPLVQVILGVIRLI-----PTPQYYPLRLHCIRSLISLSRSSG 460 (661)
T ss_pred HHHHHHHHHHHH-hhc---cHhhhhhhh-hHHHHHHHHHhhhc-----CcccchhHHHHHHHHHHHHHhhcC
Confidence 121 222 222 445555554 22333332222211 111134578888898888887653
No 309
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.27 E-value=8.3e+02 Score=35.48 Aligned_cols=76 Identities=21% Similarity=0.273 Sum_probs=55.6
Q ss_pred ccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccC
Q 000326 10 QSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVL 88 (1661)
Q Consensus 10 ~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~ 88 (1661)
...++..++..|.-. |+.....|+++|.+++...+.+.... .-+.++.++.=|..+++..++...--++.++....
T Consensus 39 ~dsel~~I~kkL~Kk-D~~TK~KaL~eL~eli~~~~~e~~~~--il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~l 114 (1312)
T KOG0803|consen 39 LDSELDIIVKKLLKR-DETTKIKALQELSELIDTSDTEELKG--ILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKL 114 (1312)
T ss_pred cCHHHHHHHHHHhcc-ChHHHHHHHHhHHHhcccccchHHhh--hHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHH
Confidence 566899999999877 99999999999999998776554432 12234555543444556899988888888887644
No 310
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.25 E-value=2.6e+02 Score=38.37 Aligned_cols=103 Identities=11% Similarity=-0.003 Sum_probs=78.2
Q ss_pred hHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHH
Q 000326 175 ADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGL 254 (1661)
Q Consensus 175 ~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~a 254 (1661)
..++.+++..-..+|.+++..+.-.|+-+++....-....++.+=.++.. .=+-+++.+... ++-++..|
T Consensus 798 v~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq-~W~~vie~~~~k---------~~L~v~~a 867 (1014)
T KOG4524|consen 798 VKIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQ-TWPSVIECLLCK---------DPLIVQRA 867 (1014)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHh-hhhHHHHHHhcC---------chHHHHHH
Confidence 44566777777788999999999999999987666544455555555533 355666666665 57799999
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcC
Q 000326 255 IRLLSTCASGSPLCAKTLLHLGISGILKDILSG 287 (1661)
Q Consensus 255 lr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~ 287 (1661)
+.+|-+++..+.+-.+.=+-..++|.+..++..
T Consensus 868 ~~~i~~m~~~sgDFv~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 868 FSCIEQMGKYSGDFVASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888777776777889999988864
No 311
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=22.85 E-value=4.8e+02 Score=32.30 Aligned_cols=140 Identities=11% Similarity=0.165 Sum_probs=88.5
Q ss_pred hhhcccccHHHHHHHHhcCCc-HHHHHHHHHHHHHhhccCcchhh-hcCchHHHHhh-hccC-----ChHHHHHHHHHHH
Q 000326 93 AAVVHYGAVTCFVARLLTIEY-MDLAEQSLQALKKISQEHPTACL-RAGALMAVLSY-LDFF-----STGVQRVALSTAA 164 (1661)
Q Consensus 93 ~~vV~~GaVp~Lv~kLL~~~~-~dl~Eqal~aL~nIS~~~~~~Il-~~GgL~~LL~l-Ld~~-----~~~vqr~Al~aLs 164 (1661)
..+.++.++..|+ ++-..++ +.++.++++.+.++-......++ ......+++++ +... ...+.+.-+..+.
T Consensus 3 Eyll~~~Il~~L~-~la~~d~p~g~r~~~l~f~~~Ll~~~~~plL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~lL~ 81 (353)
T PF10257_consen 3 EYLLQHQILETLC-TLAKADYPPGMRQEVLKFFSRLLSQSQQPLLPHRSVHRPLQRLLLRSCGESRSASPTEKELVELLN 81 (353)
T ss_pred HHHHHhChHHHHH-HHHcccCChHHHHHHHHHHHHHHHhcccccccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHHHH
Confidence 4566778899999 7766554 88999999999999776655444 45667888888 6521 3446666677777
Q ss_pred HhccCCCCchh--H--------H-----------------HhC---cHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCC
Q 000326 165 NMCKKLPSDAA--D--------F-----------------VME---AVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASS 214 (1661)
Q Consensus 165 Nlc~~~~~~~~--~--------~-----------------v~~---~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~ 214 (1661)
.+|.+...... . . ... ++..|...++++ ..|-..|+-++..++.--..+
T Consensus 82 ~lc~~i~~~P~ll~~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~e-g~ig~~Are~LLll~~l~~~~ 160 (353)
T PF10257_consen 82 TLCSKIRKDPSLLNFFFESSPSQAQEEDSESSSSSFAGRTGKSEFLLFSLLLPYVHSE-GRIGDFAREGLLLLMSLASED 160 (353)
T ss_pred HHHHHHHhCHHHHHHHhcCCccccccccccCcccccCCCCCCccchHHHHHHHHhCcC-cHHHHHHHHHHHHHHhCCCCC
Confidence 77764321110 0 0 012 234444444444 889999999998888853334
Q ss_pred HHHHHHHHh-CCcHHHHHHhh
Q 000326 215 PDKLDELCN-HGLVTQAATLI 234 (1661)
Q Consensus 215 ~e~~~~li~-~gll~~Lv~LL 234 (1661)
+..-+.+++ ..+++.+..-|
T Consensus 161 ~~~~~~i~~~S~fc~~latgL 181 (353)
T PF10257_consen 161 PALAQYIVEHSDFCPVLATGL 181 (353)
T ss_pred cHHHHHHHHcchhHHHHHHHH
Confidence 555566666 45665555444
No 312
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=22.74 E-value=1.1e+03 Score=32.66 Aligned_cols=40 Identities=23% Similarity=0.383 Sum_probs=32.1
Q ss_pred ccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000326 52 FSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1661)
Q Consensus 52 ~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~ 91 (1661)
+-...+++.|++++.....+++|..|...|.-|+..+..+
T Consensus 186 l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~ 225 (838)
T KOG2073|consen 186 LNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQ 225 (838)
T ss_pred HhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhccccc
Confidence 3345689999999987777999999999999988874433
No 313
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=22.45 E-value=1.7e+02 Score=30.81 Aligned_cols=46 Identities=20% Similarity=0.311 Sum_probs=41.4
Q ss_pred hhcCCCchHHhHHHHHHHHHhhCchhhhhhHHhhcHHHHHHHHHhc
Q 000326 436 LAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILA 481 (1661)
Q Consensus 436 l~~~d~~l~~~aL~i~~~Ll~K~pd~f~~~f~REGV~~~I~~L~~~ 481 (1661)
|.+.++...+.||.+.+.+++...+.|+..+...+.++.+.++...
T Consensus 46 l~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~ 91 (133)
T smart00288 46 LNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKP 91 (133)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcC
Confidence 3457788899999999999999999999999999999999998874
No 314
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=22.29 E-value=2.5e+02 Score=34.68 Aligned_cols=73 Identities=21% Similarity=0.216 Sum_probs=51.6
Q ss_pred HHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhc
Q 000326 160 LSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLIS 235 (1661)
Q Consensus 160 l~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~ 235 (1661)
...|..+|....... ..-+++|..|.+.|++.|+.|+-.|+..+-.++.+ ...-...++.+..+...|..|+.
T Consensus 26 W~~IlDvCD~v~~~~-~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~N--Cg~~~r~EVsSr~F~~el~al~~ 98 (462)
T KOG2199|consen 26 WSLILDVCDKVGSDP-DGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVAN--CGKRFRLEVSSRDFTTELRALIE 98 (462)
T ss_pred HHHHHHHHHhhcCCC-cccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHh--cchHHHHHHhhhhHHHHHHHHHh
Confidence 344556777554333 56788999999999999999999999998888886 23334445555556666666664
No 315
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=22.28 E-value=2.6e+02 Score=31.29 Aligned_cols=52 Identities=12% Similarity=0.110 Sum_probs=38.5
Q ss_pred HHHHHHHhccC-CCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhh
Q 000326 159 ALSTAANMCKK-LPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEA 210 (1661)
Q Consensus 159 Al~aLsNlc~~-~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~ 210 (1661)
|...+..+... ....-...+...++.|...|++.|++|...++.+|..|+..
T Consensus 58 A~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 58 ARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTS 110 (183)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 44444444443 33344556777888899999999999999999999999774
No 316
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=22.26 E-value=6.8e+02 Score=34.23 Aligned_cols=143 Identities=20% Similarity=0.179 Sum_probs=88.5
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch
Q 000326 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC 92 (1661)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~~~p~~~ 92 (1661)
=++.+...+..+ ++......+..++.+.....-++.. .....-+..-++ +. .-..+....+++|..+++..|+..
T Consensus 442 lW~~l~~~~~~~-~~~la~~lL~~~~~l~~l~~~~~~~--~~~~~~~~~~~~-N~-~~~~~~~~~~~il~rls~~~~~~L 516 (727)
T PF12726_consen 442 LWKALLKSLDSD-NPDLAKALLKSLSPLIGLEKFPPKK--EKDELDPAKTQF-NK-SLGQITDLISQILERLSDFDPSHL 516 (727)
T ss_pred HHHHHHHhhcCC-ChHHHHHHHHHHHHhccccccCCcc--cccCcchHHHHH-HH-HHHHHHHHHHHHHHHHhcCCHHHH
Confidence 345566666654 7777777777777666554322211 111122221111 10 012445567899999999999888
Q ss_pred hhhc-ccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhccCChHHHHHHHHHHHHhcc
Q 000326 93 AAVV-HYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCK 168 (1661)
Q Consensus 93 ~~vV-~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~ 168 (1661)
..+. +.+++..++ .++-+++.++.+.|+..|..+.... |-..++-.+|..+-.....-..|.+..+..
T Consensus 517 ~~l~~d~~~~~~i~-s~lfsp~~~l~qaA~~llk~~~d~~-------~R~e~i~~ll~~~~~~tL~ai~~~l~~~~~ 585 (727)
T PF12726_consen 517 KELLSDPDAAQAIW-SLLFSPDDDLYQAAQDLLKQAFDVD-------GRLEAIQALLQSNFSPTLSAINWSLRQLTK 585 (727)
T ss_pred HHHHcCcchhhHHH-hheeCCChHHHHHHHHHHHHHhcCC-------cHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 8776 678888888 8999999999999999999998633 333444444444444444455555555544
No 317
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=22.10 E-value=1.8e+03 Score=28.69 Aligned_cols=253 Identities=17% Similarity=0.119 Sum_probs=123.1
Q ss_pred HHHHHHhhcCCCHHHH-HHHHHHHHHHHhcCCC------cccc--ccc--ccCcHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 000326 15 KKILSGLRADGEEGKQ-VEALTQLCEMLSIGTE------ESLS--TFS--VDSFAPVLVGLLNHESNPDIMLLAARALTH 83 (1661)
Q Consensus 15 ~~Ll~~L~s~~D~~~q-l~Al~~L~~lL~~~~~------~~l~--~~~--~~g~vp~Lv~lL~~~~~~eiq~~A~raL~N 83 (1661)
+.-+.-+-.++.|.+| +.|+.-|--++-.+.. +.+. .+. -+.+|+.|.+++.......+|..|+|.|++
T Consensus 45 ~~w~ki~laeg~ptm~~laa~~GlvaLvgse~~~iQlkse~~~ss~~q~~lnevir~ltqvis~sg~iglQsn~~wlLGh 124 (589)
T PF11229_consen 45 PAWIKIVLAEGCPTMQRLAALNGLVALVGSEGDLIQLKSEAIQSSQFQSRLNEVIRTLTQVISFSGVIGLQSNAAWLLGH 124 (589)
T ss_pred HHHHHHHHhcCCcHHHHHHHhhchhheeccccceeeehhhcccCHHHHHHHHHHHHHHHHHHcCccccccccchHHHHHH
Confidence 3445555667788665 5566666433322211 1111 111 123788888888877778899999999988
Q ss_pred hhcc--CCcchh--------hhcccccHHHHHHHHhcCCc-------HHHHHHHHHHHHHhhccCcc----hhhhcCchH
Q 000326 84 LCDV--LPSSCA--------AVVHYGAVTCFVARLLTIEY-------MDLAEQSLQALKKISQEHPT----ACLRAGALM 142 (1661)
Q Consensus 84 La~~--~p~~~~--------~vV~~GaVp~Lv~kLL~~~~-------~dl~Eqal~aL~nIS~~~~~----~Il~~GgL~ 142 (1661)
+--. +..+.+ .+=+.-.|.+.++.+.+... +.+.. -+|.-|+.-.+. -+-=+-.+.
T Consensus 125 Lhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lvk---vvl~~ia~vgeS~qyPPVNWaalLs 201 (589)
T PF11229_consen 125 LHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLVK---VVLKPIATVGESYQYPPVNWAALLS 201 (589)
T ss_pred HHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHHH---HHHHHhhhcCCCCCCCCccHHHHhh
Confidence 7532 111111 12233344455544444322 22332 234444332221 111112334
Q ss_pred HHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q 000326 143 AVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELC 222 (1661)
Q Consensus 143 ~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~~~li 222 (1661)
+++.+ +|..++|+.|+.+..-=|........-.-.=+.|.|..-|... +...-+.-+.-.... -.+++++.++
T Consensus 202 PLMRl--nfGeEvq~lCLeiAvtQaqSSqsAa~fLg~WlsPpli~sLs~~---tk~~L~~Sl~~wmkh--VsedqiQ~Fv 274 (589)
T PF11229_consen 202 PLMRL--NFGEEVQQLCLEIAVTQAQSSQSAAMFLGSWLSPPLIHSLSVN---TKKYLFESLSLWMKH--VSEDQIQAFV 274 (589)
T ss_pred HHHhc--cccHHHHHHHHHHHHHhccccccHHHHHHhhcCcchhhhhhHH---HHHHHHHHHHHHHhh--CCHHHHHHHH
Confidence 44444 5789999999877665554322222111223455555444433 333333344444443 2667888887
Q ss_pred hCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHhhc
Q 000326 223 NHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASG-SPLCAKTLLHLGISGILKDILS 286 (1661)
Q Consensus 223 ~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~-s~~~t~~Ll~~gil~~L~~LL~ 286 (1661)
+.= +++.+...+ +.-+++.+..+++-|..-..- +|.+--.=+-|.....|..+|-
T Consensus 275 e~l----~vq~F~~~~-----~~~~~~lC~saLqGLsqAMKlP~P~~h~Ws~Lc~ttekIF~lLP 330 (589)
T PF11229_consen 275 ENL----MVQQFKAAS-----RPSNPELCQSALQGLSQAMKLPSPAQHCWSLLCETTEKIFDLLP 330 (589)
T ss_pred HHH----HHHHHhhcC-----CCCChHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhCc
Confidence 642 233333221 112566777777777663332 2332222222455555555554
No 318
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.04 E-value=1.2e+03 Score=31.14 Aligned_cols=144 Identities=12% Similarity=0.076 Sum_probs=93.3
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchHHHHhhhcc-CChHHHHHHHHHHHHhccCCCCchhHHHh
Q 000326 101 VTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDF-FSTGVQRVALSTAANMCKKLPSDAADFVM 179 (1661)
Q Consensus 101 Vp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~-~~~~vqr~Al~aLsNlc~~~~~~~~~~v~ 179 (1661)
+..||..|-++.++.-+-+|=.+|.-++.... .+..|.-+|+. ..+-.|--|..++.-+.....+-..+.--
T Consensus 7 Le~lCk~LY~s~D~~~R~~AE~~L~e~s~spe-------clskCqlll~~gs~pYs~mlAst~L~Klvs~~t~lpl~qrl 79 (1082)
T KOG1410|consen 7 LESLCKDLYESTDPTARHRAEKALAELSESPE-------CLSKCQLLLERGSYPYSQMLASTCLMKLVSRKTPLPLEQRL 79 (1082)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHccCHH-------HHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCCCCcHHHHH
Confidence 56789888889988888888888887765432 45556666664 35567778888888888866655555666
Q ss_pred CcHHHHHHhhccCC----HHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHH
Q 000326 180 EAVPLLTNLLQYHD----AKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLI 255 (1661)
Q Consensus 180 ~~lp~L~~lL~~~D----~~v~e~A~~aLs~L~~~~~~~~e~~~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~al 255 (1661)
++-..+++.|-..- +-|+...|..+++|+.- .--..+.....=-+.+..+.+.|... +.+-+.-.+
T Consensus 80 dir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~-gW~d~~k~~y~FRd~v~~~~kfl~~~---------~ve~~~igv 149 (1082)
T KOG1410|consen 80 DIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKL-GWFDQQKDEYVFRDPVDDVTKFLQMD---------NVEHCIIGV 149 (1082)
T ss_pred HHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhc-cccccccccchhhhhHHHHHHHhccC---------chHHHHHHH
Confidence 67777777777644 45777778888888863 11112222222235677777777654 233444455
Q ss_pred HHHHHH
Q 000326 256 RLLSTC 261 (1661)
Q Consensus 256 r~L~nL 261 (1661)
++|..+
T Consensus 150 ~iLsqL 155 (1082)
T KOG1410|consen 150 QILSQL 155 (1082)
T ss_pred HHHHHH
Confidence 555544
No 319
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=21.96 E-value=2.3e+02 Score=29.79 Aligned_cols=78 Identities=14% Similarity=0.121 Sum_probs=56.4
Q ss_pred ccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCccc-ccccccCcHHHHHHhhcC--CCCHHHHHHHHHHHHHhhc
Q 000326 10 QSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESL-STFSVDSFAPVLVGLLNH--ESNPDIMLLAARALTHLCD 86 (1661)
Q Consensus 10 ~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l-~~~~~~g~vp~Lv~lL~~--~~~~eiq~~A~raL~NLa~ 86 (1661)
...-++.|-..|++. ++.+|+.|+.-|-.+...+. ..+ ..+....|+-.|+.++.. ..+++++..+...|.+...
T Consensus 35 ~k~a~raL~krl~~~-n~~vql~AL~lLd~~vkNcg-~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 35 PKEAARAIRKKIKYG-NPHVQLLALTLLELLVKNCG-KPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhCC-hHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 345677778888886 99999999999955555554 434 445556888899999975 3457888888777777766
Q ss_pred cCC
Q 000326 87 VLP 89 (1661)
Q Consensus 87 ~~p 89 (1661)
..+
T Consensus 113 ~f~ 115 (133)
T cd03561 113 SFG 115 (133)
T ss_pred Hhc
Confidence 444
No 320
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=21.86 E-value=1.9e+02 Score=35.95 Aligned_cols=124 Identities=17% Similarity=0.249 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhc------CCcHHHHHHHHHHHHHhhccCcch---hhhcCchHH
Q 000326 73 IMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLT------IEYMDLAEQSLQALKKISQEHPTA---CLRAGALMA 143 (1661)
Q Consensus 73 iq~~A~raL~NLa~~~p~~~~~vV~~GaVp~Lv~kLL~------~~~~dl~Eqal~aL~nIS~~~~~~---Il~~GgL~~ 143 (1661)
-...|+-.|..++..-.+.+.. ++-..++.++. ..+..-++.|+..++-||...... +-+...+-.
T Consensus 227 rR~AA~dfl~~L~~~~~~~v~~-----i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~ 301 (370)
T PF08506_consen 227 RRRAACDFLRSLCKKFEKQVTS-----ILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVD 301 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-
T ss_pred cHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccccc
Confidence 4557888888888644333332 23334444444 344567888999999998765321 111111112
Q ss_pred HHhhhc-----------cCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHH
Q 000326 144 VLSYLD-----------FFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCL 204 (1661)
Q Consensus 144 LL~lLd-----------~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aL 204 (1661)
+.+++. ...+-++..|++.+.-.-...+ ......++|.|++.|.+++.-|-..|+.|+
T Consensus 302 v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~---~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 302 VVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLP---KEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS----HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 222221 1234456678888876655433 345778999999999999998988888875
No 321
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=21.76 E-value=8.9e+02 Score=28.72 Aligned_cols=59 Identities=24% Similarity=0.320 Sum_probs=36.1
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 000326 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCD 86 (1661)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~vp~Lv~lL~~~~~~eiq~~A~raL~NLa~ 86 (1661)
-++.|+..|+.+ |+... ....+|+ .. .+....+||.|+..=. ++.+...+++.|.||+-
T Consensus 14 ~LkdL~r~lr~d-d~~~~-~v~r~lg----~~------~iv~~DLiPiL~~~~~---~~~l~~~~l~LLV~LT~ 72 (266)
T PF04821_consen 14 CLKDLKRFLRRD-DEDQR-DVRRQLG----EW------NIVQKDLIPILISYKD---DDKLFLACLRLLVNLTW 72 (266)
T ss_pred HHHHHHHHHHHh-CcchH-HHHHHHH----Hh------chhhhhHHHHHHhccC---chHHHHHHHHHHHHhCC
Confidence 466667777665 44433 2222222 11 2556667777765533 58899999999999873
No 322
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=21.43 E-value=5.8e+02 Score=36.95 Aligned_cols=125 Identities=18% Similarity=0.143 Sum_probs=85.2
Q ss_pred CchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHH
Q 000326 139 GALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKL 218 (1661)
Q Consensus 139 GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e~~ 218 (1661)
+.|..++..|....+.+..+|+.||+++....+. ...-.++-..+..-+..+...|.+.|+-.+++.+-. .++.+
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~--vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~---~~e~~ 890 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPS--VLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLS---IPELI 890 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChH--hhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhc---cHHHH
Confidence 3455666677777888899999999999864321 112234555566667777788999999999987775 66665
Q ss_pred HHHHhCCcHHHHHHhhccCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCC
Q 000326 219 DELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGS 288 (1661)
Q Consensus 219 ~~li~~gll~~Lv~LL~~~~~~~~~~~~s~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~ 288 (1661)
.... ..+.+-+..+ +..+...++++|.-||...|+... +.+++.+||...
T Consensus 891 ~qyY-----~~i~erIlDt---------gvsVRKRvIKIlrdic~e~pdf~~------i~~~cakmlrRv 940 (1692)
T KOG1020|consen 891 FQYY-----DQIIERILDT---------GVSVRKRVIKILRDICEETPDFSK------IVDMCAKMLRRV 940 (1692)
T ss_pred HHHH-----HHHHhhcCCC---------chhHHHHHHHHHHHHHHhCCChhh------HHHHHHHHHHHh
Confidence 5554 3444444433 466999999999999988776533 344666666543
No 323
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=21.00 E-value=1.6e+03 Score=27.48 Aligned_cols=151 Identities=15% Similarity=0.076 Sum_probs=95.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhc-cCCcchhhhccc--ccHHHHHHHHhcCCc-------------HHHHHHHH
Q 000326 58 APVLVGLLNHESNPDIMLLAARALTHLCD-VLPSSCAAVVHY--GAVTCFVARLLTIEY-------------MDLAEQSL 121 (1661)
Q Consensus 58 vp~Lv~lL~~~~~~eiq~~A~raL~NLa~-~~p~~~~~vV~~--GaVp~Lv~kLL~~~~-------------~dl~Eqal 121 (1661)
++.+.+.|+... ..++..|.+.|+.|+. .....+..+... --.+.|. +|+.... .+++...+
T Consensus 58 ~k~lyr~L~~~~-~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~-kll~~~~~~~~~~~~~~~~~~siR~~fI 135 (330)
T PF11707_consen 58 LKLLYRSLSSSK-PSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLP-KLLTPRKKEKEKDSESSKSKPSIRTNFI 135 (330)
T ss_pred HHHHHHHhCcCc-HHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHH-HHhccccccccccccccccCcCHHHHHH
Confidence 677778887765 7888899999999998 554555555432 1234444 5553322 16776666
Q ss_pred HHHHHhhccCc-c---hhh-hcCchHHHHhhhccCChHHHHHHHHHHHH-hccCCCCch----hHHHhCcHHHHHHhhcc
Q 000326 122 QALKKISQEHP-T---ACL-RAGALMAVLSYLDFFSTGVQRVALSTAAN-MCKKLPSDA----ADFVMEAVPLLTNLLQY 191 (1661)
Q Consensus 122 ~aL~nIS~~~~-~---~Il-~~GgL~~LL~lLd~~~~~vqr~Al~aLsN-lc~~~~~~~----~~~v~~~lp~L~~lL~~ 191 (1661)
.-+-.+....+ . .++ +.+.+..++..|...+..+....+.++.. +.....-+. ...-..++..|..+...
T Consensus 136 ~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~ 215 (330)
T PF11707_consen 136 RFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSR 215 (330)
T ss_pred HHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcc
Confidence 65544444333 2 344 44567888888888788888888777774 443321111 11223467778887777
Q ss_pred CCH----HHHHHHHHHHHHHHhh
Q 000326 192 HDA----KVLEHASVCLTRIAEA 210 (1661)
Q Consensus 192 ~D~----~v~e~A~~aLs~L~~~ 210 (1661)
.++ .+.+.+-..|..+|..
T Consensus 216 ~~~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 216 DGEDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred cCCcccchHHHHHHHHHHHHhcC
Confidence 777 7777777777777764
No 324
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=20.96 E-value=5.9e+02 Score=35.11 Aligned_cols=197 Identities=13% Similarity=0.057 Sum_probs=97.7
Q ss_pred CHHHHHHHHHHHHHhhccCC--cchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhcc-----Ccc----hhhhc
Q 000326 70 NPDIMLLAARALTHLCDVLP--SSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQE-----HPT----ACLRA 138 (1661)
Q Consensus 70 ~~eiq~~A~raL~NLa~~~p--~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~-----~~~----~Il~~ 138 (1661)
.+-+|-.-++.++.---..| ...+.+-+...|+.|++.|..+.+++++-.|-.+|+-|.+. .++ .+...
T Consensus 159 ~stlMD~Llkli~~de~~~p~~~Viq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~ 238 (838)
T KOG2073|consen 159 ISTLMDFLLKLISTDEPESPRTDVIQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESP 238 (838)
T ss_pred ccHHHHHHHHhccccCCCCchHHHHHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCH
Confidence 44555544444433222222 12223446678999997777777889988888888888776 443 35555
Q ss_pred CchHHHHhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhC--cHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHH
Q 000326 139 GALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVME--AVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPD 216 (1661)
Q Consensus 139 GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~--~lp~L~~lL~~~D~~v~e~A~~aLs~L~~~~~~~~e 216 (1661)
..+..|+..+=+ ....+-..+..+.-|.+....... .+.. ..-++.+-....|+-+...++.++..-
T Consensus 239 e~ieqLl~~ml~-~~~s~s~lVs~i~vlI~ll~~~r~-~~~~~~~~~i~~q~~~~~d~~~~~~~l~~~~p~--------- 307 (838)
T KOG2073|consen 239 ETIEQLLKIMLE-DGTSLSVLVSGIIVLISLLNPRRD-TVETNSTTTILSQPPSERDPIVLNELLGAMEPR--------- 307 (838)
T ss_pred HHHHHHHHHHcc-CCcchhhHHHHHHHHHHhcCcccc-cccccceeeeecCCccccCccchHHHHHHHHHH---------
Confidence 666666654432 222222333333333332111111 0111 111222223334555555554444322
Q ss_pred HHHHHHhCCcHHHHHHhhccCCCC-------CC-CCCCChhHHHHHHHHHHHHh-cCCHHHHHHHHHcCChHHHHHhhcC
Q 000326 217 KLDELCNHGLVTQAATLISTSNSG-------GG-QASLSTPTYTGLIRLLSTCA-SGSPLCAKTLLHLGISGILKDILSG 287 (1661)
Q Consensus 217 ~~~~li~~gll~~Lv~LL~~~~~~-------~~-~~~~s~~i~~~alr~L~nLa-s~s~~~t~~Ll~~gil~~L~~LL~~ 287 (1661)
+..+++||...... |. .+.+ ...+..+++.++.+. .++..+.+.+...++++.+..++..
T Consensus 308 ----------L~dF~~lL~~~~~~~~l~tt~g~l~pPL-G~~Rlki~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~ 376 (838)
T KOG2073|consen 308 ----------LGDFVQLLLEPEKLDLLETTYGELEPPL-GFERLKIVELIAELLHCSNMTLLNELRAEGIAERLLDLFFE 376 (838)
T ss_pred ----------HHHHHHHhcCCccchhhhhhhhccCCCc-chHHHHHHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHh
Confidence 22333333322100 00 0112 235677788777654 4567777778888877777666654
Q ss_pred C
Q 000326 288 S 288 (1661)
Q Consensus 288 ~ 288 (1661)
+
T Consensus 377 y 377 (838)
T KOG2073|consen 377 Y 377 (838)
T ss_pred c
Confidence 3
No 325
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=20.53 E-value=4.2e+02 Score=27.51 Aligned_cols=49 Identities=22% Similarity=0.294 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHH
Q 000326 153 TGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCL 204 (1661)
Q Consensus 153 ~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lp~L~~lL~~~D~~v~e~A~~aL 204 (1661)
..+...++.++..++.-.+...+ ...+.++.+.++|+++ ++.+.|+-||
T Consensus 100 ~~~~~~~L~~l~s~i~~~~~~~i-~~~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWISWIPIELI-INSNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTTTS-HHHH-HSSSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHh-ccHHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 56777788888877774433332 2245788888888444 4467777665
Done!