Query 000326
Match_columns 1661
No_of_seqs 488 out of 2783
Neff 7.0
Searched_HMMs 29240
Date Tue Mar 26 18:18:29 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000326.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_103-106//hhsearch_pdb/000326hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2oni_A E3 ubiquitin-protein li 1.0 1 1 580.3 25.5 330 1244-1659 11-356 (392)
2 3h1d_A E3 ubiquitin-protein li 1.0 1 1 572.0 30.3 328 1245-1659 16-360 (405)
3 1zvd_A SMAD ubiquitination reg 1.0 1 1 567.2 28.7 319 1254-1660 3-337 (380)
4 1c4z_A E6AP, ubiquitin-protein 1.0 1 1 564.0 19.4 296 1299-1659 4-314 (358)
5 1nd7_A WW domain-containing pr 1.0 1 1 561.9 29.0 319 1254-1659 3-336 (374)
6 3olm_A E3 ubiquitin-protein li 1.0 1 1 558.5 23.8 298 1299-1659 73-386 (429)
7 3ul1_B Importin subunit alpha- 1.0 1 1 361.6 38.0 390 8-481 53-460 (510)
8 3tpo_A Importin subunit alpha- 1.0 1 1 350.6 38.2 388 10-481 74-479 (529)
9 4b8j_A Importin subunit alpha- 1.0 1 1 305.3 38.6 387 11-481 73-478 (528)
10 1wa5_B Importin alpha subunit; 1.0 1 1 290.1 37.8 388 10-481 85-492 (530)
No 1
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A
Probab=1.00 E-value=1 Score=580.28 Aligned_cols=330 Identities=26% Similarity=0.406 Sum_probs=290.7
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCEEEEEECCCHHHHHHHHHHHHCC-
Q ss_conf 6310799445756789978862002079999999840579999874011102764305999818028999999995302-
Q 000326 1244 QLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYS- 1322 (1661)
Q Consensus 1244 ~l~~~~PFlfpfe~R~~~f~~~~fg~~R~l~~l~~~~~~~~~~~~~~~~~~~~rl~r~kv~V~R~~il~~a~~~l~~~~- 1322 (1661)
.....+||.++|+.|..||+.. +...+ ....+.+++|+|++|++|+++++....
T Consensus 11 ~~~~~~p~~~~f~~k~~~f~~~----------l~~~~---------------~~~~~~~l~V~R~~i~eds~~~l~~~~~ 65 (392)
T 2oni_A 11 RENLYFQGSREFKQKYDYFRKK----------LKKPA---------------DIPNRFEMKLHRNNIFEESYRRIMSVKR 65 (392)
T ss_dssp ---CCSTTHHHHHHHHHHHHHH----------CCCCS---------------SSCSEEEEEECGGGHHHHHHHHHHHCSC
T ss_pred HCCCCCCCCCCHHHHHHHHHHH----------HHCCC---------------CCCCCEEEEECCCCHHHHHHHHHHCCCC
T ss_conf 1035798621189999999999----------71254---------------7899779998178669999999976592
Q ss_pred --CCCCEEEEEECCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf --896317999717732376-50489999999999514889843489999998544688898898888888731357887
Q 000326 1323 --SQKAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGL 1399 (1661)
Q Consensus 1323 --~~~~~LeV~F~gE~G~g~-Gpt~EFy~lvs~El~~~~l~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yv~~~~gL 1399 (1661)
..|+.|+|+|.||+|+|. ||+||||+++++|+++|+++||..+.. +.| .+
T Consensus 66 ~~~lk~~l~V~F~gE~G~D~GG~~rEff~ll~~el~~p~~gLF~~~~~----------------------~~~-----~~ 118 (392)
T 2oni_A 66 PDVLKARLWIEFESEKGLDYGGVAREWFFLLSKEMFNPYYGLFEYSAT----------------------DNY-----TL 118 (392)
T ss_dssp GGGGGSEEEEEEC-CCSSCHHHHHHHHHHHHHHHHTCGGGSSEEESST----------------------TCC-----CE
T ss_pred HHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEECCC----------------------CCC-----EE
T ss_conf 776274179998787662688438999999999973966687400389----------------------882-----23
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHH
Q ss_conf 66999999777668870236789998423667755349833566749999988099889474000049999999999999
Q 000326 1400 FPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVI 1479 (1661)
Q Consensus 1400 fP~p~~~~~~~~~~~~~~~~~~~F~~lG~lia~al~d~~~ldl~fs~~f~k~llg~~~tl~DL~~vDp~l~~sL~~L~~~ 1479 (1661)
+|+|.+.. . ..+++++|+|+|++||+||++++++|++|+++|||+|+|.+++++||+.+||++|++|++|++.
T Consensus 119 ~~np~s~~---~----~~~~l~~f~flG~lig~Al~~~~~ld~~f~~~f~K~llg~~~~l~Dl~~~Dp~l~~sL~~l~~~ 191 (392)
T 2oni_A 119 QINPNSGL---C----NEDHLSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSEYYNSLKWILEN 191 (392)
T ss_dssp EECTTHHH---H----CTTHHHHHHHHHHHHHHHHHHTCCCSSCBCHHHHHHHTTCCCCTHHHHTTCHHHHHHHHHHHHS
T ss_pred CCCCCCCC---C----CHHHHHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHCC
T ss_conf 02886354---6----6778888873355430442379503764259999999679887889877489999998888649
Q ss_pred HHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCEEECC----CC-CCEEECCCCC--CCCCCCHHHHHHHHHHHHHHHCH
Q ss_conf 85443210013576002330144798544442300028----98-7211079994--33636599999999999987309
Q 000326 1480 VCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLP----GY-PDYILKPGDE--NVDINNLEEYISLVVDATVKTGI 1552 (1661)
Q Consensus 1480 ~~~~~~~~~~~~~~~~~~~~l~~~~~~iedL~L~Ftlp----g~-~~ieL~pgG~--~VT~~N~~eYi~~v~~~~l~~gv 1552 (1661)
++++|+|+|+++ |+ .++||+|||+ +||.+|++|||+++++|+++.+|
T Consensus 192 --------------------------d~~~l~L~F~v~~~~~G~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i 245 (392)
T 2oni_A 192 --------------------------DPTELDLMFCIDEENFGQTYQVDLKPNGSEIMVTNENKREYIDLVIQWRFVNRV 245 (392)
T ss_dssp --------------------------CCGGGCCBSEEEEEETTEEEEEESSTTGGGCBCCTTTHHHHHHHHHHHHHTTTS
T ss_pred --------------------------CHHHCEEEEEEEEECCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf --------------------------965730468994103894468963799856734444299999999999886667
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHC
Q ss_conf 99999998411113562001488998999862189876677898634274588799985799999999209999998735
Q 000326 1553 MRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFC 1632 (1661)
Q Consensus 1553 ~~q~~afr~GF~~V~p~~~L~~Fsp~EL~~li~G~~e~w~~e~L~~~~~~d~Gy~~~s~~i~~fwevl~~~s~eerr~FL 1632 (1661)
+.|++||++||++|+|..+|++|+|+||+.|+||.++ +|+++|+++|+|+|||+.+|++|+|||+||.+|+.+||++||
T Consensus 246 ~~q~~af~~Gf~~vip~~~L~~F~~~ELe~licG~~~-id~~dl~~~t~y~~gy~~~~~~i~~FW~vv~~~s~eer~~fL 324 (392)
T 2oni_A 246 QKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGD-VDVNDWRQHSIYKNGYCPNHPVIQWFWKAVLLMDAEKRIRLL 324 (392)
T ss_dssp HHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHCCCC-CCHHHHHHTCEEETTCCTTCHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHCCCCC-CCHHHHHCCEEECCCCCCCCCHHEEHHHHHHHCCHHHHHHHH
T ss_conf 7999999999998566876516999999886068988-789998401587788799873220099999849999999999
Q ss_pred CCCCCCCCCCCCCCCCCC-----CCEEEEECC
Q ss_conf 400377778957756899-----966998058
Q 000326 1633 QFVTGAPRLPPGGLAVLN-----PKLTIVRKV 1659 (1661)
Q Consensus 1633 qFvTGs~rLP~gGf~~L~-----P~ltVvrk~ 1659 (1661)
||||||+|+|+|||++|. ++|+|.+..
T Consensus 325 ~FvTGs~rlP~~Gf~~L~~~~gp~~f~I~~~~ 356 (392)
T 2oni_A 325 QFVTGTSRVPMNGFAELYGSNGPQLFTIEQWG 356 (392)
T ss_dssp HHHHSCSCCCTTCGGGCEETTEECCCEEEECS
T ss_pred HHHHCCCCCCCCCHHHHCCCCCCCCEEEEECC
T ss_conf 98718998898555440456788755997589
No 2
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A
Probab=1.00 E-value=1 Score=572.03 Aligned_cols=328 Identities=28% Similarity=0.441 Sum_probs=284.2
Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCEEEEEECCCHHHHHHHHHHHHCC--
Q ss_conf 310799445756789978862002079999999840579999874011102764305999818028999999995302--
Q 000326 1245 LTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYS-- 1322 (1661)
Q Consensus 1245 l~~~~PFlfpfe~R~~~f~~~~fg~~R~l~~l~~~~~~~~~~~~~~~~~~~~rl~r~kv~V~R~~il~~a~~~l~~~~-- 1322 (1661)
.+..-|. .+|+.|+.||+. .++.... ..+..+.+++|+|++|++|+++++....
T Consensus 16 ~~~~~~~-~~f~~k~~~F~~----------~l~~~~~-------------~~~~~~~~l~VrR~~i~eds~~~l~~~~~~ 71 (405)
T 3h1d_A 16 VLFQGPH-MDFDVKRKYFRQ----------ELERLDE-------------GLRKEDMAVHVRRDHVFEDSYRELHRKSPE 71 (405)
T ss_dssp GGGCSTT-SCHHHHHHHHHH----------HHHHHTT-------------TCCCCEEEEEECGGGHHHHHHHHHTTSCTT
T ss_pred HHHCCCC-CCHHHHHHHHHH----------HHHHHHC-------------CCCCCCEEEEEECCHHHHHHHHHHHCCCHH
T ss_conf 8614987-688999999999----------9986224-------------788986699994860799999999715988
Q ss_pred CCCCEEEEEECCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 896317999717732376-5048999999999951488984348999999854468889889888888873135788766
Q 000326 1323 SQKAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFP 1401 (1661)
Q Consensus 1323 ~~~~~LeV~F~gE~G~g~-Gpt~EFy~lvs~El~~~~l~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yv~~~~gLfP 1401 (1661)
+.+++|+|+|.||+|+|. |++||||+++++|+++|+++||+.+++ + .+ .++|
T Consensus 72 ~lk~~l~V~F~gE~G~D~GG~~rEff~ll~~elf~p~~gLF~~~~~-~---------------------~~-----~~~~ 124 (405)
T 3h1d_A 72 EMKNRLYIVFEGEEGQDAGGLLREWYMIISREMFNPMYALFRTSPG-D---------------------RV-----TYTI 124 (405)
T ss_dssp GGGSEEEEEETTCCSCCCTTHHHHHHHHHHHHTTCGGGTSEEECSS-C---------------------SS-----EEEE
T ss_pred HHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCC-C---------------------CE-----EEEE
T ss_conf 7616669997898774787369999999999983986444022268-8---------------------32-----6730
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHH
Q ss_conf 99999977766887023678999842366775534983356674999998809988947400004999999999999985
Q 000326 1402 RPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVC 1481 (1661)
Q Consensus 1402 ~p~~~~~~~~~~~~~~~~~~~F~~lG~lia~al~d~~~ldl~fs~~f~k~llg~~~tl~DL~~vDp~l~~sL~~L~~~~~ 1481 (1661)
+|.+.. ..+++++|+|+|++||+||++++++|++|+++|||+|+|.+++++||+.+||++|++|++|+++
T Consensus 125 np~s~~--------~~~~l~~f~flGrliG~Al~~~~~ld~~F~~~f~K~Llg~~~~l~DL~~~Dp~l~~sL~~ll~~-- 194 (405)
T 3h1d_A 125 NPSSHA--------NPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLEN-- 194 (405)
T ss_dssp CCC-------------CHHHHHHHHHHHHHHHHHHTCCCCCEECHHHHHHHHTCCCCGGGHHHHCHHHHHHHHHHHHS--
T ss_pred CCCCCC--------CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC--
T ss_conf 773225--------7557789998869999999389825877629999982699897898987549999998666509--
Q ss_pred HHHHHHCCCCCCCHHHHCCCCCCCCCCC--CCCEEECC----C-CCCEEECCCCC--CCCCCCHHHHHHHHHHHHHHHCH
Q ss_conf 4432100135760023301447985444--42300028----9-87211079994--33636599999999999987309
Q 000326 1482 RKQHLESMTSDNCEEVVDLRFRGAPIED--LCLDFTLP----G-YPDYILKPGDE--NVDINNLEEYISLVVDATVKTGI 1552 (1661)
Q Consensus 1482 ~~~~~~~~~~~~~~~~~~l~~~~~~ied--L~L~Ftlp----g-~~~ieL~pgG~--~VT~~N~~eYi~~v~~~~l~~gv 1552 (1661)
++++ ++|+|+++ | ..++||+|||+ +||.+|+++||+++++|+++.+|
T Consensus 195 ------------------------~~~~l~l~ltF~~~~~~~G~~~~veL~p~G~~i~VT~~Nk~eYV~l~~~~~l~~~v 250 (405)
T 3h1d_A 195 ------------------------DVSTLGYDLTFSTEVQEFGVAEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAI 250 (405)
T ss_dssp ------------------------CGGGSSSCEEEETTTCCEEECCGGGGSSCSSEEECCTTTHHHHHHHHHHHHHTGGG
T ss_pred ------------------------CHHHHCCEEEEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf ------------------------85564341489998523786236860578977742667689999999999998779
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHC
Q ss_conf 99999998411113562001488998999862189876677898634274588799985799999999209999998735
Q 000326 1553 MRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFC 1632 (1661)
Q Consensus 1553 ~~q~~afr~GF~~V~p~~~L~~Fsp~EL~~li~G~~e~w~~e~L~~~~~~d~Gy~~~s~~i~~fwevl~~~s~eerr~FL 1632 (1661)
+.|++||++||++|+|..+|++|+|+||+.|+||.++ ||+++|+++|+| +||+.+|++|+|||+||++|+.+||++||
T Consensus 251 ~~q~~aF~~Gf~~Vip~~~L~lF~~~ELe~Li~G~~~-id~~dl~~~t~y-~gy~~~~~~i~~FW~v~~~~s~eer~~fL 328 (405)
T 3h1d_A 251 RKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPT-IDIDDLKSNTEY-HKYQSNSIQIQWFWRALRSFDQADRAKFL 328 (405)
T ss_dssp HHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHCCCC-CCHHHHHHTEEE-ESSCTTCHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC-CCHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHCCHHHHHHHH
T ss_conf 9999999999998702888757999999998488777-999999830803-48898870474499899749999999999
Q ss_pred CCCCCCCCCCCCCCCCCCC-----CEEEEECC
Q ss_conf 4003777789577568999-----66998058
Q 000326 1633 QFVTGAPRLPPGGLAVLNP-----KLTIVRKV 1659 (1661)
Q Consensus 1633 qFvTGs~rLP~gGf~~L~P-----~ltVvrk~ 1659 (1661)
||||||+|+|++||++|+| +|+|.+..
T Consensus 329 ~FvTGs~rlP~~Gf~~L~~~~~~~~f~i~~~~ 360 (405)
T 3h1d_A 329 QFVTGTSKVPLQGFAALEGMNGIQKFQIHRDD 360 (405)
T ss_dssp HHHHSSSCCCTTCGGGCBCSSSBCCEEEEEEC
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCEEEEEECC
T ss_conf 99729998898751003666787307995179
No 3
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Probab=1.00 E-value=1 Score=567.20 Aligned_cols=319 Identities=24% Similarity=0.360 Sum_probs=280.5
Q ss_pred CHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCEEEEEECCCHHHHHHHHHHHHC-C-CCCCEEEEE
Q ss_conf 75678997886200207999999984057999987401110276430599981802899999999530-2-896317999
Q 000326 1254 PFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMY-S-SQKAVLEVE 1331 (1661)
Q Consensus 1254 pfe~R~~~f~~~~fg~~R~l~~l~~~~~~~~~~~~~~~~~~~~rl~r~kv~V~R~~il~~a~~~l~~~-~-~~~~~LeV~ 1331 (1661)
+|+.|..+|+.. ++..+. ...+.+++|+|++|++|+++++... + +.+++|+|+
T Consensus 3 ~f~~k~~~f~~~----------l~~~~~---------------~~~~~~l~V~R~~i~~ds~~~l~~~~~~~lk~~l~V~ 57 (380)
T 1zvd_A 3 DLVQKLKILRQE----------LSQQQP---------------QAGHCRIEVSREEIFEESYRQVMKMRPKDLWKRLMIK 57 (380)
T ss_dssp SHHHHHHHHHHH----------HHHHSC---------------SSCEEEEEECSTTHHHHHHHHHHTSCGGGGGSEEEEE
T ss_pred CHHHHHHHHHHH----------HHHCCC---------------CCCCEEEEECCCCHHHHHHHHHHCCCHHHHCCCEEEE
T ss_conf 759999999999----------874278---------------8986699976677999999999745979846745999
Q ss_pred ECCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 717732376-5048999999999951488984348999999854468889889888888873135788766999999777
Q 000326 1332 YFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADA 1410 (1661)
Q Consensus 1332 F~gE~G~g~-Gpt~EFy~lvs~El~~~~l~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yv~~~~gLfP~p~~~~~~~ 1410 (1661)
|.||+|+|. ||+||||+++++|+++|+++||..+++ +.| .++|+|.+..
T Consensus 58 F~gE~G~D~GG~~rEff~ll~~el~~p~~gLF~~~~~----------------------~~~-----~~~~np~s~~--- 107 (380)
T 1zvd_A 58 FRGEEGLDYGGVAREWLYLLSHEMLNPYYGLFQYSRD----------------------DIY-----TLQINPDSAV--- 107 (380)
T ss_dssp ETTCCCSCHHHHHHHHHHHHHHHHTSGGGSSEEEETT----------------------EEE-----EEEECTTGGG---
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCC----------------------CCE-----EECCCCHHHC---
T ss_conf 7787675888518999999999980876787003688----------------------871-----3435832215---
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 66887023678999842366775534983356674999998809988947400004999999999999985443210013
Q 000326 1411 SEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMT 1490 (1661)
Q Consensus 1411 ~~~~~~~~~~~~F~~lG~lia~al~d~~~ldl~fs~~f~k~llg~~~tl~DL~~vDp~l~~sL~~L~~~~~~~~~~~~~~ 1490 (1661)
..+++++|+|+|++||+||++++++|++|+++|||+|+|.+++++||+.+||++|++|++|++.
T Consensus 108 -----~~~~l~~f~flG~l~g~al~~~~~ld~~f~~~f~k~llg~~~~l~Dl~~~Dp~l~~sL~~ll~~----------- 171 (380)
T 1zvd_A 108 -----NPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQLLGKSITLDDMELVDPDLHNSLVWILEN----------- 171 (380)
T ss_dssp -----STTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCSTTHHHHCHHHHHHHHHHHHS-----------
T ss_pred -----CHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHC-----------
T ss_conf -----8678999998588887998179524775879999999579887788777689999999998708-----------
Q ss_pred CCCCHHHHCCCCCCCCCCC-CCCEEECCC-----CCCEEECCCCC--CCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHH
Q ss_conf 5760023301447985444-423000289-----87211079994--336365999999999999873099999999841
Q 000326 1491 SDNCEEVVDLRFRGAPIED-LCLDFTLPG-----YPDYILKPGDE--NVDINNLEEYISLVVDATVKTGIMRQMEAFRAG 1562 (1661)
Q Consensus 1491 ~~~~~~~~~l~~~~~~ied-L~L~Ftlpg-----~~~ieL~pgG~--~VT~~N~~eYi~~v~~~~l~~gv~~q~~afr~G 1562 (1661)
++++ |+|+|+++. ..++||+|||+ +||.+|+++||+++++|+|+.+|+.|++||++|
T Consensus 172 ---------------d~~~~l~ltF~~~~~~~g~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~G 236 (380)
T 1zvd_A 172 ---------------DITGVLDHTFCVEHNAYGEIIQHELKPNGKSIPVNEENKKEYVRLYVNWRFLRGIEAQFLALQKG 236 (380)
T ss_dssp ---------------CCTTTSCCCSEEEEEETTEEEEEESSTTCCCCCCTTTTHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred ---------------CCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---------------81000234168863037957678527999777144023999999999999987699999999975
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCC
Q ss_conf 11135620014889989998621898766778986342745887999857999999992099999987354003777789
Q 000326 1563 FNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLP 1642 (1661)
Q Consensus 1563 F~~V~p~~~L~~Fsp~EL~~li~G~~e~w~~e~L~~~~~~d~Gy~~~s~~i~~fwevl~~~s~eerr~FLqFvTGs~rLP 1642 (1661)
|++|+|..+|++|+|+||+.|+||.++ +|+++|+++|+|+ ||+.+|++|+|||+||++|+.+||++||||||||+|+|
T Consensus 237 f~~vip~~~L~~F~~~ELe~li~G~~~-id~~dl~~~t~y~-gy~~~~~~i~~FW~vv~~~s~eer~~fL~FvTGs~rlP 314 (380)
T 1zvd_A 237 FNEVIPQHLLKTFDEKELELIICGLGK-IDVNDWKVNTRLK-HCTPDSNIVKWFWKAVEFFDEERRARLLQFVTGSSRVP 314 (380)
T ss_dssp HHHHSCGGGGTTCCHHHHHHHHHCBSS-CCHHHHHHTEEEE-SSCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSSBC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHCCCCC-CCHHHHHHCCEEC-CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC
T ss_conf 988758999857999999986489987-7743565331753-88987613626999997289999999999983899889
Q ss_pred CCCCCCCCC-----CEEEEECCC
Q ss_conf 577568999-----669980589
Q 000326 1643 PGGLAVLNP-----KLTIVRKVA 1660 (1661)
Q Consensus 1643 ~gGf~~L~P-----~ltVvrk~~ 1660 (1661)
+|||++|+| +|||+++..
T Consensus 315 ~~Gf~~L~~~~gp~~f~I~~~~~ 337 (380)
T 1zvd_A 315 LQGFKALQGAAGPRLFTIHQIDA 337 (380)
T ss_dssp TTCGGGCEETTEECCEEEEECCC
T ss_pred CCCHHHCCCCCCCCCEEEEECCC
T ss_conf 86410025667887659995589
No 4
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Probab=1.00 E-value=1 Score=563.99 Aligned_cols=296 Identities=30% Similarity=0.506 Sum_probs=266.4
Q ss_pred CEEEEEECCCHHHHHHHHHHHHC-----CCCCCEEEEEECCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 30599981802899999999530-----2896317999717732376-50489999999999514889843489999998
Q 000326 1299 ERQKVRVSRNRILDSAAKVMEMY-----SSQKAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPS 1372 (1661)
Q Consensus 1299 ~r~kv~V~R~~il~~a~~~l~~~-----~~~~~~LeV~F~gE~G~g~-Gpt~EFy~lvs~El~~~~l~lf~~~~~~~~~~ 1372 (1661)
+..+++|+|++|++|++++++.+ .+.|++|+|+|.||+|+|. ||+||||+++++|+++|+++||+.++++
T Consensus 4 ~~~~l~V~R~~i~eds~~~l~~~~~~~~~~lk~~l~V~F~gE~G~D~GG~~rEff~ll~~el~~p~~glF~~~~~~---- 79 (358)
T 1c4z_A 4 PYLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYDEST---- 79 (358)
T ss_dssp CSCCEEECSSSHHHHHHHHHHHHHHSCGGGGGSCCCEEETTCCCCCSSHHHHHHHHHHHHHHTSGGGCSEEEETTT----
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCCHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCC----
T ss_conf 7389997687579999999998732697986574699977876748886399999999999718767955652899----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 54468889889888888873135788766999999777668870236789998423667755349833566749999988
Q 000326 1373 MEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLV 1452 (1661)
Q Consensus 1373 ~~~~~~~~~~~~~~~~~~~yv~~~~gLfP~p~~~~~~~~~~~~~~~~~~~F~~lG~lia~al~d~~~ldl~fs~~f~k~l 1452 (1661)
. .++|+|.+. ...++|+|+|++||+||++++++|++|+++|||+|
T Consensus 80 -----------------~-------~~~~np~s~-----------~~~~~f~flG~lig~Al~~~~~ld~~f~~~f~k~l 124 (358)
T 1c4z_A 80 -----------------K-------LFWFNPSSF-----------ETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKL 124 (358)
T ss_dssp -----------------T-------EEEECTTCC-----------SCHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHH
T ss_pred -----------------C-------EEEECCCCC-----------CCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf -----------------8-------474277322-----------33577886999999999779976876889999999
Q ss_pred HCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCEEECC-----CC-CCEEECC
Q ss_conf 09988947400004999999999999985443210013576002330144798544442300028-----98-7211079
Q 000326 1453 LGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLP-----GY-PDYILKP 1526 (1661)
Q Consensus 1453 lg~~~tl~DL~~vDp~l~~sL~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iedL~L~Ftlp-----g~-~~ieL~p 1526 (1661)
+|.+++++||+.+||++|++|++|+++ +++..++|+|+|+++ |. .++||+|
T Consensus 125 lg~~~~l~Dl~~~Dp~l~~sL~~l~~~-----------------------~~d~~~~l~ltF~~~~~~~~G~~~~~eL~p 181 (358)
T 1c4z_A 125 MGKKGTFRDLGDSHPVLYQSLKDLLEY-----------------------EGNVEDDMMITFQISQTDLFGNPMMYDLKE 181 (358)
T ss_dssp TTCCCCHHHHHHHSHHHHHHHHHHHHC-----------------------CSCHHHHTCCBSEEEECCTTTCCEEEESST
T ss_pred HCCCCCHHHHHHHCHHHHHHHHHHHHC-----------------------CCCHHHHCCCEEEEECCCCCCCEEEEECCC
T ss_conf 589998899998699999999999855-----------------------776666503507874145689753464477
Q ss_pred CCC--CCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCC-CCCHHHHHHHHCCCCCCCCHHHHHHHCEEC
Q ss_conf 994--33636599999999999987309999999984111135620014-889989998621898766778986342745
Q 000326 1527 GDE--NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQ-IFTPHELDHLLCGRRELWEPAALAEHIKFD 1603 (1661)
Q Consensus 1527 gG~--~VT~~N~~eYi~~v~~~~l~~gv~~q~~afr~GF~~V~p~~~L~-~Fsp~EL~~li~G~~e~w~~e~L~~~~~~d 1603 (1661)
||+ +||.+|+++||+++++|+++++|++|++||++||++|+|...|. +|+|+||+.++||.++ ||+++|+++|+|+
T Consensus 182 ~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~lF~~~ELe~li~G~~~-id~~~l~~~t~y~ 260 (358)
T 1c4z_A 182 NGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRN-LDFQALEETTEYD 260 (358)
T ss_dssp TTTTSBCCTTTHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHSSSCSCSCSSTHHHHHHHHCBCC-CCCTTTSTTCEEE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHCCCC-CCHHHHHHHCEEC
T ss_conf 986665442129999999999986210999999999888873695253348999999998613567-8899999871317
Q ss_pred CCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 88799985799999999209999998735400377778957756899966998058
Q 000326 1604 HGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKV 1659 (1661)
Q Consensus 1604 ~Gy~~~s~~i~~fwevl~~~s~eerr~FLqFvTGs~rLP~gGf~~L~P~ltVvrk~ 1659 (1661)
|||+.+|++|+|||+||++|+.+||++||||||||+|+|+|||++| +|+|+|+.
T Consensus 261 ~gy~~~~~~i~~FW~vv~~~~~eer~~fL~FvTGs~rlP~~Gf~~l--~~~I~~~~ 314 (358)
T 1c4z_A 261 GGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKL--KMIIAKNG 314 (358)
T ss_dssp SSCCSSCHHHHHHHHHHHTSCHHHHHHHHHHHSSSSSBCTTCGGGG--CCEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCC--EEEEECCC
T ss_conf 8989776045369999973999999999989708997899885545--24620478
No 5
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Probab=1.00 E-value=1 Score=561.95 Aligned_cols=319 Identities=28% Similarity=0.406 Sum_probs=279.6
Q ss_pred CHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCEEEEEECCCHHHHHHHHHHHHCC--CCCCEEEEE
Q ss_conf 756789978862002079999999840579999874011102764305999818028999999995302--896317999
Q 000326 1254 PFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYS--SQKAVLEVE 1331 (1661)
Q Consensus 1254 pfe~R~~~f~~~~fg~~R~l~~l~~~~~~~~~~~~~~~~~~~~rl~r~kv~V~R~~il~~a~~~l~~~~--~~~~~LeV~ 1331 (1661)
+|+.|..+|+. .++... ..++++++|+|++|++|+++++.... ..+++|+|+
T Consensus 3 ~f~~k~~~f~~----------~~~~~~----------------~~~~~~l~V~R~~i~~ds~~~l~~~~~~~l~~~l~V~ 56 (374)
T 1nd7_A 3 GFRWKLAHFRY----------LCQSNA----------------LPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVI 56 (374)
T ss_dssp THHHHHHHHHH----------HHHHTC----------------CSSEEEEEECTTTHHHHHHHHHHTSCGGGGGSEEEEE
T ss_pred CHHHHHHHHHH----------HHHHCC----------------CCCCEEEEECCCCHHHHHHHHHHHCCHHHCCCEEEEE
T ss_conf 75899999999----------986247----------------9997699987887799999999836987615548999
Q ss_pred ECCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 717732376-5048999999999951488984348999999854468889889888888873135788766999999777
Q 000326 1332 YFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADA 1410 (1661)
Q Consensus 1332 F~gE~G~g~-Gpt~EFy~lvs~El~~~~l~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yv~~~~gLfP~p~~~~~~~ 1410 (1661)
|.||+|+|. ||+||||+++++|+++|+++||+.++. +.| .++|+|.+..
T Consensus 57 F~gE~G~D~GG~~rEff~ll~~el~~p~~~lF~~~~~----------------------~~~-----~~~~~p~s~~--- 106 (374)
T 1nd7_A 57 FRGEEGLDYGGLAREWFFLLSHEVLNPMYCLFEYAGK----------------------NNY-----CLQINPASTI--- 106 (374)
T ss_dssp ETTTCCCCCTHHHHHHHHHHHHHHTCGGGSSEEESSS----------------------SSC-----CEEECGGGGG---
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC----------------------CCC-----EECCCCCCCC---
T ss_conf 8887775788428999999999973976465431588----------------------883-----2204874457---
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 66887023678999842366775534983356674999998809988947400004999999999999985443210013
Q 000326 1411 SEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMT 1490 (1661)
Q Consensus 1411 ~~~~~~~~~~~~F~~lG~lia~al~d~~~ldl~fs~~f~k~llg~~~tl~DL~~vDp~l~~sL~~L~~~~~~~~~~~~~~ 1490 (1661)
..+++++|+|+|++||+||++++++|++|+++|||+|+|.+++++||+.+||++|++|++|++.
T Consensus 107 -----~~~~l~~f~flG~lig~al~~~~~ld~~f~~~f~k~llg~~~~l~Dl~~~Dp~l~~sL~~l~~~----------- 170 (374)
T 1nd7_A 107 -----NPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRDN----------- 170 (374)
T ss_dssp -----STTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCHHHHHTTCHHHHHHHHHHHSS-----------
T ss_pred -----CHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC-----------
T ss_conf -----8779999999899987998659743785879999999389887889999619999865421359-----------
Q ss_pred CCCCHHHHCCCCCCCCCCCCCCEEECC----C-CCCEEECCCCC--CCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHC
Q ss_conf 576002330144798544442300028----9-87211079994--3363659999999999998730999999998411
Q 000326 1491 SDNCEEVVDLRFRGAPIEDLCLDFTLP----G-YPDYILKPGDE--NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGF 1563 (1661)
Q Consensus 1491 ~~~~~~~~~l~~~~~~iedL~L~Ftlp----g-~~~ieL~pgG~--~VT~~N~~eYi~~v~~~~l~~gv~~q~~afr~GF 1563 (1661)
+..++ +|+|+|++. | ..++||+|||+ +||.+|+++||+++++|+|+++|+.|++||++||
T Consensus 171 ------------~~~~~-~l~l~F~~~~~~~G~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf 237 (374)
T 1nd7_A 171 ------------NIEEC-GLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGF 237 (374)
T ss_dssp ------------CSCSS-CCCCBSEECCCSSTTCCCEESSTTGGGCBCCTTTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred ------------CHHHH-HCCEEEEEEECCCCCEEEEECCCCCCCCEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf ------------85253-11015887511478500474478996745231109999999999997020999999999864
Q ss_pred CCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCC
Q ss_conf 11356200148899899986218987667789863427458879998579999999920999999873540037777895
Q 000326 1564 NQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPP 1643 (1661)
Q Consensus 1564 ~~V~p~~~L~~Fsp~EL~~li~G~~e~w~~e~L~~~~~~d~Gy~~~s~~i~~fwevl~~~s~eerr~FLqFvTGs~rLP~ 1643 (1661)
++|+|..+|++|+|+||+.++||.++ +|+++|+++|+|+| |+.+|++|+|||+||++|+.+||++||||||||+|+|+
T Consensus 238 ~~vip~~~L~~F~~~ELe~li~G~~~-id~~dl~~~t~y~g-y~~~~~~i~~FW~vv~~~~~eer~~fL~FvTGs~rlP~ 315 (374)
T 1nd7_A 238 NEVVPLQWLQYFDEKELEVMLCGMQE-VDLADWQRNTVYRH-YTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPL 315 (374)
T ss_dssp HHHSCGGGGTTCCHHHHHHHHHCCCC-CCHHHHHHTEEEES-CCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSCCCT
T ss_pred HHHCCHHHHHCCCHHHHHHHHCCCCC-CCHHHHHHHEEECC-CCCCCCCEEEHHHHHHHCCHHHHHHHHHHHHCCCCCCC
T ss_conf 65089899846999999998569987-88898751069748-99898402549999986599999999999848998898
Q ss_pred CCCCCCC-----CCEEEEECC
Q ss_conf 7756899-----966998058
Q 000326 1644 GGLAVLN-----PKLTIVRKV 1659 (1661)
Q Consensus 1644 gGf~~L~-----P~ltVvrk~ 1659 (1661)
|||++|+ ++|+|.+..
T Consensus 316 ~Gf~~L~~~~gp~~f~I~~~~ 336 (374)
T 1nd7_A 316 GGFAELMGSNGPQKFCIEKVG 336 (374)
T ss_dssp TCGGGCEETTEECCEEEECCS
T ss_pred CCHHHCCCCCCCCCEEEEECC
T ss_conf 433221566788765997589
No 6
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=558.54 Aligned_cols=298 Identities=25% Similarity=0.398 Sum_probs=268.6
Q ss_pred CEEEEEECCCHHHHHHHHHHHHC--CCCCCEEEEEECCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 30599981802899999999530--2896317999717732376-50489999999999514889843489999998544
Q 000326 1299 ERQKVRVSRNRILDSAAKVMEMY--SSQKAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEI 1375 (1661)
Q Consensus 1299 ~r~kv~V~R~~il~~a~~~l~~~--~~~~~~LeV~F~gE~G~g~-Gpt~EFy~lvs~El~~~~l~lf~~~~~~~~~~~~~ 1375 (1661)
.+.+++|+|++|++|+++++... .+.+++|+|+|.||+|+|. ||+||||+++++|+++|+++||..+.+ +
T Consensus 73 ~~~~l~VrR~~i~eds~~~l~~~~~~~lk~~l~V~F~gE~G~D~GG~~rEff~ll~~elf~p~~gLF~~~~~-~------ 145 (429)
T 3olm_A 73 GQCHIKVRRKNIFEDAYQEIMRQTPEDLKKRLMIKFDGEEGLDYGGVSREFFFLLSHEMFNPFYCLFEYSAY-D------ 145 (429)
T ss_dssp SCEEEEEETTSHHHHHHHHHHHSCHHHHTSCEEEEEETTC--------CHHHHHHHHHHTCGGGSSEEESSS-S------
T ss_pred CCEEEEEECCHHHHHHHHHHHHCCHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECC-C------
T ss_conf 855899954211899999998468575186369997998743787449999999999974966799435079-9------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCC
Q ss_conf 68889889888888873135788766999999777668870236789998423667755349833566749999988099
Q 000326 1376 DGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGH 1455 (1661)
Q Consensus 1376 ~~~~~~~~~~~~~~~~yv~~~~gLfP~p~~~~~~~~~~~~~~~~~~~F~~lG~lia~al~d~~~ldl~fs~~f~k~llg~ 1455 (1661)
.| .++|+|.+.. ..+++++|+|+|++||+||++++++|++|+++|||+|+|.
T Consensus 146 ---------------~~-----~~~~np~s~~--------~~~~l~~f~flG~lig~Al~~~~~ld~~f~~~f~k~Llg~ 197 (429)
T 3olm_A 146 ---------------NY-----TIQINPNSGI--------NPEHLNYFKFIGRVVGLGVFHRRFLDAFFVGALYKMMLRK 197 (429)
T ss_dssp ---------------SC-----CEEECGGGGG--------STTHHHHHHHHHHHHHHHHHTTCCCCCCBCHHHHHHHTTC
T ss_pred ---------------CE-----EEEECCCCCC--------CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCC
T ss_conf ---------------81-----5756886558--------8778999999999999999669866877689999761399
Q ss_pred CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCC-CCCCEEECCC-----CCCEEECCCCC
Q ss_conf 88947400004999999999999985443210013576002330144798544-4423000289-----87211079994
Q 000326 1456 ELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIE-DLCLDFTLPG-----YPDYILKPGDE 1529 (1661)
Q Consensus 1456 ~~tl~DL~~vDp~l~~sL~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ie-dL~L~Ftlpg-----~~~ieL~pgG~ 1529 (1661)
+++++||+.+||++|++|++|++. +++ .|+|+|+++. ..++||+|||+
T Consensus 198 ~~~l~Dl~~~Dp~l~~sL~~ll~~--------------------------d~~~~l~l~F~~~~~~~g~~~~veL~p~G~ 251 (429)
T 3olm_A 198 KVVLQDMEGVDAEVYNSLNWMLEN--------------------------SIDGVLDLTFSADDERFGEVVTVDLKPDGR 251 (429)
T ss_dssp CCCHHHHHHHCHHHHHHHHHHTTS--------------------------CCTTTCCCBSEEEEEETTEEEEEESSTTGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHC--------------------------CHHHHHCCCEEEEECCCCCEEEEECCCCCC
T ss_conf 997999998769999999999848--------------------------987762374388740479634685467876
Q ss_pred --CCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCEECCCCC
Q ss_conf --336365999999999999873099999999841111356200148899899986218987667789863427458879
Q 000326 1530 --NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYT 1607 (1661)
Q Consensus 1530 --~VT~~N~~eYi~~v~~~~l~~gv~~q~~afr~GF~~V~p~~~L~~Fsp~EL~~li~G~~e~w~~e~L~~~~~~d~Gy~ 1607 (1661)
+||.+|+++||+++++|+++++|+.|++||++||++|+|..+|++|+|+||+.|+||.++ +|+++|+++|+| +||+
T Consensus 252 ~i~VT~~Nk~eYV~l~~~~~l~~~v~~q~~aF~~Gf~~vip~~~L~~F~~~ELe~Li~G~~~-id~~dl~~~t~y-~Gy~ 329 (429)
T 3olm_A 252 NIEVTDGNKKEYVELYTQWRIVDRVQEQFKAFMDGFNELIPEDLVTVFDERELELLIGGIAE-IDIEDWKKHTDY-RGYQ 329 (429)
T ss_dssp GSBCCTTTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTSCHHHHTTSCHHHHHHHHTCBCC-CCHHHHHHTEEE-ESCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHCCCCC-CCHHHHHHHCCC-CCCC
T ss_conf 66657046899999999999987699999999997563279999845999999999569988-899999974623-6999
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC-----CEEEEECC
Q ss_conf 99857999999992099999987354003777789577568999-----66998058
Q 000326 1608 AKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNP-----KLTIVRKV 1659 (1661)
Q Consensus 1608 ~~s~~i~~fwevl~~~s~eerr~FLqFvTGs~rLP~gGf~~L~P-----~ltVvrk~ 1659 (1661)
.+|++|+|||+||++|+.+||++||||||||+|+|++||++|+| +|+|++..
T Consensus 330 ~~~~~I~~FW~vv~~~s~eer~~fL~FvTGs~rlP~~Gf~~L~~~~g~~~f~I~~~~ 386 (429)
T 3olm_A 330 ESDEVIQWFWKCVSEWDNEQRARLLQFTTGTSRIPVNGFKDLQGSDGPRRFTIEKAG 386 (429)
T ss_dssp TTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSCBCTTCGGGCEETTEECCEEEECCS
T ss_pred CCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECC
T ss_conf 886299999999986899999999958518998897530004676777218996289
No 7
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=1.00 E-value=1 Score=361.59 Aligned_cols=390 Identities=20% Similarity=0.318 Sum_probs=342.2
Q ss_pred CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 86631399999983229999999999999999981699866221100094999998514999989999999999996306
Q 000326 8 SHQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDV 87 (1661)
Q Consensus 8 ~~~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~e~~l~~~~~~~~vp~LV~lL~~~~~~eiq~~A~raL~NL~~~ 87 (1661)
+..+..++.||++|+|+ |+..|+.|++.+|++|+...+++++.++..|+||.||++|+..+++++|.+|||||+||+.+
T Consensus 53 ~~~~~~i~~~v~~l~s~-d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~ 131 (510)
T 3ul1_B 53 GTVNWSVEDIVKGINSN-NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG 131 (510)
T ss_dssp CCSSCCHHHHHHHHTSS-CHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 21440099999984599-99999999999999865788962999998888899999877899899999999999999649
Q ss_pred CCCCHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC---HHHHCCCHHHHHHHHCCC-----CHHHHHHH
Q ss_conf 9721112101562899999972299588999999999984216954---242328448898420158-----96899999
Q 000326 88 LPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYLDFF-----STGVQRVA 159 (1661)
Q Consensus 88 ~~~~~~~iV~~GaVp~Lv~kLL~~~~~dL~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lLd~~-----~~~vqr~A 159 (1661)
+++++..|+++|+||.|+ +||.+++.+++++|+|+|+||+.+.+. .+++.|++++++.+|... ...+++.+
T Consensus 132 ~~e~~~~vv~~GaIp~Lv-~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a 210 (510)
T 3ul1_B 132 TSEQTKAVVDGGAIPAFI-SLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 210 (510)
T ss_dssp CHHHHHHHHHTTHHHHHH-HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHH-HHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999999788799999-9886999899999999999997188999999998698179999997346104459999999
Q ss_pred HHHHHHHCCCC-CCCHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCCC
Q ss_conf 99998720599-98626887180799999660699889999999999987313999777999982992799999514699
Q 000326 160 LSTAANMCKKL-PSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSN 238 (1661)
Q Consensus 160 l~~lsNlc~~~-~~~~~~~i~~~lp~L~~lL~~~D~~V~e~A~~aLs~L~~~~~~~~e~l~~li~~gli~~Lv~LL~~~~ 238 (1661)
+|+++|+|++. +...+..+.+++|.|..+|.+.|.+++..|||||++|+.+ .++..+.++..|+++.|+++|.+.
T Consensus 211 ~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~---~~~~~~~i~~~g~i~~Lv~lL~~~- 286 (510)
T 3ul1_B 211 TWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG---PNERIEMVVKKGVVPQLVKLLGAT- 286 (510)
T ss_dssp HHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS---CHHHHHHHHTTTCHHHHHHHHTCS-
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC---HHHHHHHHHHCCCCHHHHHHHCCC-
T ss_conf 9999987531110257999976999999998168799999999999998602---156678998636512555661388-
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCC----CCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9999888896699999999999841998999999982985999995339994----454333644689988999999973
Q 000326 239 SGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGV----SANSAVPPALSRPAEQIFEIVNLA 314 (1661)
Q Consensus 239 ~~~~~~~~s~~i~~~al~~L~nLas~s~~~~~~Lle~gil~~L~~LL~~~~~----~~~~~~s~i~~~~~~qi~~vi~li 314 (1661)
+..++.+++++|++++++++..+..+++.|+++.|..+|.+... .++|.++++.+++.++.+.+++
T Consensus 287 --------~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~-- 356 (510)
T 3ul1_B 287 --------ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVN-- 356 (510)
T ss_dssp --------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH--
T ss_pred --------CHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH--
T ss_conf --------7134268899998862377888888761241278888724998899999999999997084989999885--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 04179998898887766411015875447999989987888888410256787510497999999987899999997214
Q 000326 315 NELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSS 394 (1661)
Q Consensus 315 ~~LLP~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~f~~~llp~Li~vy~ss 394 (1661)
..++|.|++... +
T Consensus 357 ------------------------------------------------------------------~g~i~~Lv~lL~-~ 369 (510)
T 3ul1_B 357 ------------------------------------------------------------------HGLVPFLVGVLS-K 369 (510)
T ss_dssp ------------------------------------------------------------------TTHHHHHHHHHH-S
T ss_pred ------------------------------------------------------------------CCCHHHHHHHHC-C
T ss_conf ------------------------------------------------------------------387889999973-8
Q ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH---C--CHHHHHHHHHH
Q ss_conf 786899999999999830489999999730012689999885047983287599999999941---7--02466667863
Q 000326 395 VNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEK---L--PGTFSKMFVRE 469 (1661)
Q Consensus 395 ~~~~VR~~~L~~l~riv~~~~~~~L~~~l~~~~~ss~la~il~~~d~~l~~~aLqi~~~Ll~K---~--pd~f~~~f~RE 469 (1661)
.++.||+.+.++|.++....+.+.+..+++...+.. |..+|.+.|+.++..+|..+..+++. . ...|...|+..
T Consensus 370 ~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~-L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ 448 (510)
T 3ul1_B 370 ADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEP-LMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEEC 448 (510)
T ss_dssp SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHH-HHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHH-HHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
T ss_conf 988999999999999870699999999997978999-9998669999999999999999999857426658999999986
Q ss_pred CHHHHHHHHHHC
Q ss_conf 589999997733
Q 000326 470 GVVHAVDQLILA 481 (1661)
Q Consensus 470 GV~~~i~~L~~~ 481 (1661)
|.+..|+.|..+
T Consensus 449 ggl~~ie~Lq~~ 460 (510)
T 3ul1_B 449 GGLDKIEALQRH 460 (510)
T ss_dssp THHHHHHHGGGC
T ss_pred CCHHHHHHHHCC
T ss_conf 859999998759
No 8
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=1.00 E-value=1 Score=350.58 Aligned_cols=388 Identities=21% Similarity=0.319 Sum_probs=340.1
Q ss_pred CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 63139999998322999999999999999998169986622110009499999851499998999999999999630697
Q 000326 10 QSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLP 89 (1661)
Q Consensus 10 ~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~e~~l~~~~~~~~vp~LV~lL~~~~~~eiq~~A~raL~NL~~~~~ 89 (1661)
....++.++++|+++ |+..|+.|+..+|++|+...+++++.++..|+||.||++|...+++++|.+|||||+||+.+++
T Consensus 74 ~~~~l~~lv~~l~s~-d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~ 152 (529)
T 3tpo_A 74 VNWSVEDIVKGINSN-NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS 152 (529)
T ss_dssp SSCCHHHHHHHHTSS-CHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCH
T ss_conf 888999999985699-9999999999999987278984499999888999999987689989999999999999974999
Q ss_pred CCHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC---HHHHCCCHHHHHHHHCCC-----CHHHHHHHHH
Q ss_conf 21112101562899999972299588999999999984216954---242328448898420158-----9689999999
Q 000326 90 SSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYLDFF-----STGVQRVALS 161 (1661)
Q Consensus 90 ~~~~~iV~~GaVp~Lv~kLL~~~~~dL~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lLd~~-----~~~vqr~Al~ 161 (1661)
+++..++++|+||.|+ .|+.+++.+++++|+|+|+||+.+++. .|+++|++++++.+|... ...+++.++|
T Consensus 153 ~~~~~vv~~Gaip~Lv-~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~ 231 (529)
T 3tpo_A 153 EQTKAVVDGGAIPAFI-SLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 231 (529)
T ss_dssp HHHHHHHHTTHHHHHH-HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHH-HHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9999999888899999-987699989999999999987446889999998738727899987324403768999999999
Q ss_pred HHHHHCCCC-CCCHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCCCCC
Q ss_conf 998720599-9862688718079999966069988999999999998731399977799998299279999951469999
Q 000326 162 TAANMCKKL-PSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSG 240 (1661)
Q Consensus 162 ~lsNlc~~~-~~~~~~~i~~~lp~L~~lL~~~D~~V~e~A~~aLs~L~~~~~~~~e~l~~li~~gli~~Lv~LL~~~~~~ 240 (1661)
+++|+|++. +...+..+.+++|.|..+|.+.|.+++.+|||||++++.+ .++..+.++..|+++.|+++|.+.
T Consensus 232 ~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~---~~~~~~~v~~~g~i~~Lv~lL~~~--- 305 (529)
T 3tpo_A 232 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG---PNERIEMVVKKGVVPQLVKLLGAT--- 305 (529)
T ss_dssp HHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS---CHHHHHHHHTTTCHHHHHHHHTCS---
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHCCCHHHHHHHHCCC---
T ss_conf 99998741321136999864899999995599688999999999986520---005678999636028899886189---
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCC----CCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 99888896699999999999841998999999982985999995339994----45433364468998899999997304
Q 000326 241 GGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGV----SANSAVPPALSRPAEQIFEIVNLANE 316 (1661)
Q Consensus 241 ~~~~~~s~~i~~~al~~L~nLas~s~~~~~~Lle~gil~~L~~LL~~~~~----~~~~~~s~i~~~~~~qi~~vi~li~~ 316 (1661)
+..++.+++++|++|+++++..+..+++.|+++.|..+|.+... .++|+++++.+++.++.+.+++
T Consensus 306 ------~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~---- 375 (529)
T 3tpo_A 306 ------ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVN---- 375 (529)
T ss_dssp ------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHH----
T ss_pred ------CHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH----
T ss_conf ------7047788999999997164687788760242789999980998889899999999986163888889996----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 17999889888776641101587544799998998788888841025678751049799999998789999999721478
Q 000326 317 LLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVN 396 (1661)
Q Consensus 317 LLP~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~f~~~llp~Li~vy~ss~~ 396 (1661)
..++|.|++... +.+
T Consensus 376 ----------------------------------------------------------------~g~i~~Lv~lL~-~~~ 390 (529)
T 3tpo_A 376 ----------------------------------------------------------------HGLVPFLVGVLS-KAD 390 (529)
T ss_dssp ----------------------------------------------------------------TTHHHHHHHHHH-SSC
T ss_pred ----------------------------------------------------------------CCCHHHHHHHHC-CCC
T ss_conf ----------------------------------------------------------------583799999856-999
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH---HC--CHHHHHHHHHHCH
Q ss_conf 689999999999983048999999973001268999988504798328759999999994---17--0246666786358
Q 000326 397 SPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILME---KL--PGTFSKMFVREGV 471 (1661)
Q Consensus 397 ~~VR~~~L~~l~riv~~~~~~~L~~~l~~~~~ss~la~il~~~d~~l~~~aLqi~~~Ll~---K~--pd~f~~~f~REGV 471 (1661)
+.||+.+.++|.+++...+++.+..+++...+.. |..+|.+.|+.++..+|..+..+++ +. ...|...|+..|.
T Consensus 391 ~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~-L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~gg 469 (529)
T 3tpo_A 391 FKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEP-LMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGG 469 (529)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHH-HHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHH-HHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
T ss_conf 9999999999999981899999999998968999-999866999999999999999999986862676899999998774
Q ss_pred HHHHHHHHHC
Q ss_conf 9999997733
Q 000326 472 VHAVDQLILA 481 (1661)
Q Consensus 472 ~~~i~~L~~~ 481 (1661)
+.+|+.|..+
T Consensus 470 l~~ie~Lq~~ 479 (529)
T 3tpo_A 470 LDKIEALQRH 479 (529)
T ss_dssp HHHHTGGGGC
T ss_pred HHHHHHHHCC
T ss_conf 9999998749
No 9
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=1.00 E-value=1 Score=305.34 Aligned_cols=387 Identities=22% Similarity=0.306 Sum_probs=332.6
Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 31399999983229999999999999999981699866221100094999998514999989999999999996306972
Q 000326 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPS 90 (1661)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~e~~l~~~~~~~~vp~LV~lL~~~~~~eiq~~A~raL~NL~~~~~~ 90 (1661)
...++.|+..|+++ |+..|+.|++.|+++++...++....+...+++|.|+++|..+++++++..|+|+|+||+.+.++
T Consensus 73 ~~~l~~lv~~L~s~-~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~ 151 (528)
T 4b8j_A 73 LESLPAMIGGVYSD-DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSE 151 (528)
T ss_dssp --CHHHHHHHHTSS-CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHH
T ss_conf 77899999987699-99999999999999814777962999998887999999847899789999999999999679988
Q ss_pred CHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC---HHHHCCCHHHHHHHH-CCCCHHHHHHHHHHHHHH
Q ss_conf 1112101562899999972299588999999999984216954---242328448898420-158968999999999872
Q 000326 91 SCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYL-DFFSTGVQRVALSTAANM 166 (1661)
Q Consensus 91 ~~~~iV~~GaVp~Lv~kLL~~~~~dL~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lL-d~~~~~vqr~Al~~lsNl 166 (1661)
....+++.|+||.|+ .++..++.+++++|+|+|+||+.+.+. .+++.|++++++.+| +..+..+++.|+|+++|+
T Consensus 152 ~~~~~~~~g~i~~L~-~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L 230 (528)
T 4b8j_A 152 NTKVVIDHGAVPIFV-KLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNF 230 (528)
T ss_dssp HHHHHHHTTHHHHHH-HHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHH-HHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 799999688678999-8856999999999999999995899166899997785999999973489889999999999999
Q ss_pred CCCCCCCHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCC
Q ss_conf 05999862688718079999966069988999999999998731399977799998299279999951469999998888
Q 000326 167 CKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASL 246 (1661)
Q Consensus 167 c~~~~~~~~~~i~~~lp~L~~lL~~~D~~V~e~A~~aLs~L~~~~~~~~e~l~~li~~gli~~Lv~LL~~~~~~~~~~~~ 246 (1661)
|...+......+.+++|.|..+|.+.|..++..|||+|++|+.+ .++..+.+++.|+++.|+.+|.+.
T Consensus 231 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~---~~~~~~~~~~~g~v~~Lv~lL~~~--------- 298 (528)
T 4b8j_A 231 CRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLLHP--------- 298 (528)
T ss_dssp HCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS---CHHHHHHHHHTTCHHHHHHHTTCS---------
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC---CHHHHHHHHHCCHHHHHHHHHCCC---------
T ss_conf 75899986999998999999997799878999999999998738---879999999748799999997188---------
Q ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCC-CC----CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 966999999999998419989999999829859999953399-94----4543336446899889999999730417999
Q 000326 247 STPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGS-GV----SANSAVPPALSRPAEQIFEIVNLANELLPPL 321 (1661)
Q Consensus 247 s~~i~~~al~~L~nLas~s~~~~~~Lle~gil~~L~~LL~~~-~~----~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L 321 (1661)
+..++..++++|++|+.+++..++.+++.|+++.|..+|.+. .. .++|.+.++..++.++++.++.
T Consensus 299 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~--------- 369 (528)
T 4b8j_A 299 SPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVIN--------- 369 (528)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHH---------
T ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH---------
T ss_conf 75577999999999972988999999974027899999758996889999999999997799999999997---------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 88988877664110158754479999899878888884102567875104979999999878999999972147868999
Q 000326 322 PQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRH 401 (1661)
Q Consensus 322 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~f~~~llp~Li~vy~ss~~~~VR~ 401 (1661)
..++|.|++...+. +..||.
T Consensus 370 -----------------------------------------------------------~~~i~~L~~lL~~~-~~~v~~ 389 (528)
T 4b8j_A 370 -----------------------------------------------------------AGIIGPLVNLLQTA-EFDIKK 389 (528)
T ss_dssp -----------------------------------------------------------TTCHHHHHHHHHHS-CHHHHH
T ss_pred -----------------------------------------------------------CCCHHHHHHHHHCC-CHHHHH
T ss_conf -----------------------------------------------------------78799999998148-888999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCH----------HHHHHHHHHCH
Q ss_conf 99999999830489999999730012689999885047983287599999999941702----------46666786358
Q 000326 402 KCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPG----------TFSKMFVREGV 471 (1661)
Q Consensus 402 ~~L~~l~riv~~~~~~~L~~~l~~~~~ss~la~il~~~d~~l~~~aLqi~~~Ll~K~pd----------~f~~~f~REGV 471 (1661)
.++++|.++....+++....++.... -..|..+|...|+.++..|+..+..|+...+. .|...|...|.
T Consensus 390 ~a~~aL~nl~~~~~~~~~~~l~~~~~-i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 468 (528)
T 4b8j_A 390 EAAWAISNATSGGSHDQIKYLVSEGC-IKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEG 468 (528)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHTTC-HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHCCC-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC
T ss_conf 99999999974899999999998888-89999987489789999999999999998787543155542099999998786
Q ss_pred HHHHHHHHHC
Q ss_conf 9999997733
Q 000326 472 VHAVDQLILA 481 (1661)
Q Consensus 472 ~~~i~~L~~~ 481 (1661)
+..|+.|..+
T Consensus 469 ~~~l~~L~~~ 478 (528)
T 4b8j_A 469 LEKIENLQSH 478 (528)
T ss_dssp HHHHHHGGGC
T ss_pred HHHHHHHHCC
T ss_conf 9999998769
No 10
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=1.00 E-value=1 Score=290.12 Aligned_cols=388 Identities=19% Similarity=0.263 Sum_probs=326.1
Q ss_pred CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 63139999998322999999999999999998169986622110009499999851499998999999999999630697
Q 000326 10 QSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLP 89 (1661)
Q Consensus 10 ~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~e~~l~~~~~~~~vp~LV~lL~~~~~~eiq~~A~raL~NL~~~~~ 89 (1661)
....++.|+..|+++ |+..+..|+..|++++....++++..+...+++|.|+++|..+++++++..|+|+|+||+.+.+
T Consensus 85 ~~~~i~~lv~~L~s~-~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~ 163 (530)
T 1wa5_B 85 LQQELPQMTQQLNSD-DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS 163 (530)
T ss_dssp --CCHHHHHHHHSCS-SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCH
T ss_conf 577899999987599-9999999999999984789996599998888899999984799977999999999999967998
Q ss_pred CCHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC---HHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 21112101562899999972299588999999999984216954---242328448898420158968999999999872
Q 000326 90 SSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYLDFFSTGVQRVALSTAANM 166 (1661)
Q Consensus 90 ~~~~~iV~~GaVp~Lv~kLL~~~~~dL~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lLd~~~~~vqr~Al~~lsNl 166 (1661)
+....+++.|+||.|+ .++...+.+++++|+|+|+||+.+.+. .++..|+++.++.++...+..+++.|+|+++|+
T Consensus 164 ~~~~~~~~~g~i~~Lv-~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L 242 (530)
T 1wa5_B 164 AQTKVVVDADAVPLFI-QLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL 242 (530)
T ss_dssp HHHHHHHHTTCHHHHH-HHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHH-HHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 9899999779789999-998699889999999999998489952318999748599999996669888999999999998
Q ss_pred CCCC-CCCHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCC
Q ss_conf 0599-986268871807999996606998899999999999873139997779999829927999995146999999888
Q 000326 167 CKKL-PSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQAS 245 (1661)
Q Consensus 167 c~~~-~~~~~~~i~~~lp~L~~lL~~~D~~V~e~A~~aLs~L~~~~~~~~e~l~~li~~gli~~Lv~LL~~~~~~~~~~~ 245 (1661)
|.+. +........+++|.|..+|.+.|..++..|||+|++|+.+ .++..+.+++.|+++.|+.+|.+.
T Consensus 243 ~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~---~~~~~~~~~~~~~v~~Lv~lL~~~-------- 311 (530)
T 1wa5_B 243 CRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG---PQEAIQAVIDVRIPKRLVELLSHE-------- 311 (530)
T ss_dssp HCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS---CHHHHHHHHHTTCHHHHHHGGGCS--------
T ss_pred HCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC---CHHHHHHHHHCCCHHHHHHHHCCC--------
T ss_conf 679999985999973999999997699889999999999998679---889999999458389999997799--------
Q ss_pred CCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCC----CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 896699999999999841998999999982985999995339994----4543336446899889999999730417999
Q 000326 246 LSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGV----SANSAVPPALSRPAEQIFEIVNLANELLPPL 321 (1661)
Q Consensus 246 ~s~~i~~~al~~L~nLas~s~~~~~~Lle~gil~~L~~LL~~~~~----~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L 321 (1661)
+..++..++++|++++.+++...+.+++.|+++.|..+|.+... .+.|.+.++..++.++++.+++
T Consensus 312 -~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~--------- 381 (530)
T 1wa5_B 312 -STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVID--------- 381 (530)
T ss_dssp -CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH---------
T ss_pred -CHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH---------
T ss_conf -7555799999999997299999999997463999999976997889999999999997599999999998---------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 88988877664110158754479999899878888884102567875104979999999878999999972147868999
Q 000326 322 PQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRH 401 (1661)
Q Consensus 322 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~~~f~~~llp~Li~vy~ss~~~~VR~ 401 (1661)
..++|.|++... ..++.||+
T Consensus 382 -----------------------------------------------------------~~~l~~L~~lL~-~~~~~v~~ 401 (530)
T 1wa5_B 382 -----------------------------------------------------------ANLIPPLVKLLE-VAEYKTKK 401 (530)
T ss_dssp -----------------------------------------------------------TTCHHHHHHHHH-HSCHHHHH
T ss_pred -----------------------------------------------------------CCCHHHHHHHHH-CCCHHHHH
T ss_conf -----------------------------------------------------------888999999985-69888999
Q ss_pred HHHHHHHHHHHCCCH--HHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCH----------HHHHHHHHH
Q ss_conf 999999998304899--99999730012689999885047983287599999999941702----------466667863
Q 000326 402 KCLSVIGKLMYFSSA--EMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPG----------TFSKMFVRE 469 (1661)
Q Consensus 402 ~~L~~l~riv~~~~~--~~L~~~l~~~~~ss~la~il~~~d~~l~~~aLqi~~~Ll~K~pd----------~f~~~f~RE 469 (1661)
.++++|.+++...++ +....++... +-..|..++...|+.+...|+..+..|+...+. .|...|...
T Consensus 402 ~a~~aL~~l~~~~~~~~~~~~~l~~~~-~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 480 (530)
T 1wa5_B 402 EACWAISNASSGGLQRPDIIRYLVSQG-CIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKA 480 (530)
T ss_dssp HHHHHHHHHHHHTTTCTHHHHHHHHTT-CHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHCC-CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHC
T ss_conf 999999999816998199999999888-8999999980897899999999999999964666520354330999999985
Q ss_pred CHHHHHHHHHHC
Q ss_conf 589999997733
Q 000326 470 GVVHAVDQLILA 481 (1661)
Q Consensus 470 GV~~~i~~L~~~ 481 (1661)
|.+..+..|..+
T Consensus 481 g~~~~L~~L~~~ 492 (530)
T 1wa5_B 481 GGMEKIFNCQQN 492 (530)
T ss_dssp THHHHHHGGGGC
T ss_pred CCHHHHHHHHCC
T ss_conf 829999998769
Done!