Citrus Sinensis ID: 000327

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------1580------1590------1600------1610------1620------1630------1640------1650------1660-

MGGSASSSHQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILAGNTNTVPSQASSADKDNDSIPGSSRSRRYRRRSGNANPECNSSEESKNPVSVNVGSPPSSVEIPTVNSNLRSAVSASAKAFKEKYFPSDPGAAEVGVTDHLLHIKNLCMKLNAGVDDQRTKAKGKSKASGSRLADISATKEEYLIGVISEMLAELSTGDGVSTFEFIGSGVVAALLNYFSCGYKERMSEANMLKLRQQALKRFKSFIAVALPNSLDAGDVAPMTVLVQKLQNALSSLERFPVVLSHSARSSTGSARLSSGLSALSQPFKLRLCRAQGDKSLRDYSSNVVLIDPLASLAAVEEFLWPRVQRNESGQKPSASVGNSESGTAPTGAGASSPSTSTPASSALRHSSRSRLSVNIGDGMKKEPSQEKGTSSSKGKGKAVLKSAQEEVRGPQTRNAARRRAALDKDAQMKQANGDSSSEDEELDISPVEIDDALVIEDDDISDDEDDDHEDVLKDDSLPLCLSDKVHDVKLGDSAEDSTTVPSASDSQNNPASGSSSRGATGRGSDSADFRGGNSYGSRGAMSFAAAAMAGLGSANGRGVRGGRDRHGRPLFGSSNEPPKLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERFGGSDFISSDGSRLWNDIYTITYQRADSQADRMSAGVSSSATPSKSSKSGSASNSNSDSASRMSLLDSILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELSGTGVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKVAP

cccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHcHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHcHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHcccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHccccccccEEEEEccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccEEEcccccccccccccccccccccccEEEEEEEcccccccccccccEEEEcccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccEEEEEccccccccccHHHHHHHHHcccccccccccccccccccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHcccccHHHHHHHHHHHHHHccccccHHHHHHccccccccccccccccccccccccHHHHHHHHHcccccccccccHHHcccccccEEEEEEcHHHHHHHHHHHHHccccccEEEEEEccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccHHHHHHHHHHHccccccccccHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHcccccccccccccccccccccccEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHccccccccHHHHHHHcccccccccccHHHHHHHHHHHHccHHHHHHHHcccccccccccccccccccccEEEEcccc

cccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccHHcHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHcHHHEccccHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHHccccccccEEEcccccccHHHHHHHHHHHHHHccccccccEEcccHHHHHccHHHHcccccccccccccccHHHHHHHHHcccccccHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHHHHccHHHHccHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHccccHHccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccEEEEEcccccccccccccccccccccEEEEEEccccccccccccccEEEEccHHcHHHHHHHcccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccHccccccccccccccccccccccccccccccccHHHHHHcccccccccccccHHHHccccccccccccccccccEcccccccccccccccccccccccccHHHHcccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccEEEEEEcccccccccHHHHHHHHHHHccccHHHcccccccccccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHccccccccHHHHHHHHHHHHHHHHHcccEEEccccccHHHHHHHHHccccccHHHHHHHHHHHHccHHHHHHHHHHccccccccccccccccccccccEEEEEcHHHHHHHHHHHHHHHcccccEEEEEEEccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccEEEccccHHHHHHHHcccccHHcHHHccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccHHHccEEEEccccccEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHccccHHHHHHHHccccccccHHHHHHHcccccccccccHHHHHHHHHHHHccHHHHHHHHHHHcccccccccHHHHcccccEEEEEccc

mggsassshqsgRLKKILSGlradgeegkQVEALTQLCEMLSigteeslstfsvdsfAPVLVGLLNHESNPDIMLLAARALTHLcdvlpsscaAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEafasspdkldelcnhgLVTQAATLIstsnsgggqaslstptYTGLIRLLStcasgsplcaKTLLHLGISGILKDilsgsgvsansavppalsrpaeQIFEIVNLAnellpplpqgtislpsssnmfvkgpvvrkspasssgkqddtngnasEVSAREKLLSDQPELLQQFGMDLLPVLIQIYgssvnspvrhKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGvlawkdphvlipSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILagntntvpsqassadkdndsipgssrsrryrrrsgnanpecnsseesknpvsvnvgsppssveiptvnsnlrSAVSASAKAFkekyfpsdpgaaevgvtDHLLHIKNLCMKLNagvddqrtkakgkskasgsrladisatKEEYLIGVISEMLAElstgdgvstfEFIGSGVVAALLNYFSCGYKERMSEANMLKLRQQALKRFKSFIAVAlpnsldagdvapMTVLVQKLQNALSSLErfpvvlshsarsstgsarlssglsalsqpFKLRLCRAqgdkslrdyssnvvlidplasLAAVEEFLWprvqrnesgqkpsasvgnsesgtaptgagasspststpassalrhssrsrlsvnigdgmkkepsqekgtssskgkgKAVLKSAQeevrgpqtrNAARRRAALDKdaqmkqangdsssedeeldispveiddalviedddisddedddhedvlkddslplclsdkvhdvklgdsaedsttvpsasdsqnnpasgsssrgatgrgsdsadfrggnsygsrGAMSFAAAAMAGLgsangrgvrggrdrhgrplfgssneppkliftVGGKQLNRHLTIYQAIQRQLvldedederfggsdfissdgsrlwndIYTITYQradsqadrmsagvsssatpskssksgsasnsnsdsaSRMSLLDSilqgelpcdleksnptYTILALLRVLEGLNQLAPRLRAQTVCDSyaegkissldelsgtgvrvpyeefinskltPKLARQIQDALALcsgslpswcyqltkacpflfpfetrrqYFYSTAFGLSRALYRLQQqqgadghgsvnereirvgrlerqkVRVSRNRILDSAAKVMEMYSSQKAVLEVEyfgevgtglgptlEFYTLLSRDLQRVGLAMwrsnsssenpsmeidgdegksgktsnisgdlvhaplglfprpwppsadaseggqfSKVIEYFRLLGRVMAKALqdgrlldlpfsTAFYKLVLgheldlhdiipfdAEFGKILQELHVIVCRKqhlesmtsdnceevvdlrfrgapiedlcldftlpgypdyilkpgdenvdinnLEEYISLVVDATVKTGIMRQMEAFRAGFnqvfditslqiftphelDHLLCGRRELWEPAALAEhikfdhgytakspAIVNLLEIMGEFTPDQQRAFCQFvtgaprlppgglavlnpkltivrkvap

mggsassshqsgrLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLIstsnsgggqaSLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVrkspasssgkqddtngnaSEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILAGNTntvpsqassadkdndsipgssrsrryrrrsgnanpecnsseesknpvsVNVGSPPSsveiptvnsnLRSAVSASAKAFKEKYFPSDPGAAEVGVTDHLLHIKNLCMKLNAGVDDqrtkakgkskasgsrladisatkEEYLIGVISEMLAELSTGDGVSTFEFIGSGVVAALLNYFSCGYKERMSEANMLKLRQQALKRFKSFIAVALPNSLDAGDVAPMTVLVQKLQNALSSLERFPVVLSHSARSSTGSARLSSGLSALSQPFKLRLCRAQGDKSLRDYSSNVVLIDPLASLAAVEEFLWPRVQRnesgqkpsasvgnSESGTAPtgagasspststpassalrhssrsrlsvnigdgmkkepsqekgtssskgkgkavlksaqeevrgpqtrnaarrraaldkdaqmkqangdsssedeeldiSPVEIDDALVIEDDDISDDEDDDHEdvlkddslplclSDKVHDVKLGdsaedsttvpsasdsqnnpasgsssrgatgrgsdSADFRGGNSYGSRGAMSFAAAAMAGLGSANGRGVRGGRDRHGrplfgssneppkLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERFggsdfissdgsrlwNDIYTITYQRADSQADRMSAGVsssatpskssksgsasnsnsdSASRMSLLDSILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEgkissldelsgtgvRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQqgadghgsvnereirvgrlerqkvrvsrnriLDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWrsnsssenpsmeiDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEhikfdhgytaKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPrlppgglavlnpkltivrkvap

MGGSASSSHQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILAGNTNTVPSQASSADKDNDSIPGssrsrryrrrsGNANPECNSSEESKnpvsvnvgsppssvEIPTVNSNLRSAVSASAKAFKEKYFPSDPGAAEVGVTDHLLHIKNLCMKLNAGVDDQRTkakgkskasgsRLADISATKEEYLIGVISEMLAELSTGDGVSTFEFIGSGVVAALLNYFSCGYKERMSEANMLKLRQQALKRFKSFIAVALPNSLDAGDVAPMTVLVQKLQNALSSLERFPVVLSHsarsstgsarlssglsalsQPFKLRLCRAQGDKSLRDYSSNVVLIDPLASLAAVEEFLWPRVQRNESGQKPSASVGNSEsgtaptgagasspststpassalrhssrsrlsVNIGDGMKKEPSQEkgtssskgkgkAVLKSAQEEVRGPQTrnaarrraaLDKDAQMKQANGdsssedeeldISPveiddalviedddisddedddhedvlkddslPLCLSDKVHDVKLGDSAEDSTTVPSASDSQNNPasgsssrgatgrgsdsaDFRGGNSYgsrgamsfaaaamaglgsangrgvrggrdrhgrPLFGSSNEPPKLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERfggsdfissdgsRLWNDIYTITYQRADSQADRMsagvsssatpskssksgsasnsnsdsasrmsLLDSILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELSGTGVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKVAP

*******************************EALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLIS**********LSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGV**************EQIFEIVNLANELLP*******************************************************LLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILAGN*****************************************************************************************AAEVGVTDHLLHIKNLCMKLNAG************************TKEEYLIGVISEMLAELSTGDGVSTFEFIGSGVVAALLNYFSCGYKERMSEANMLKLRQQALKRFKSFIAVALPNSLDAGDVAPMTVLVQKLQNALSSLERFPVVL***********************FKLRLCRAQGDKSLRDYSSNVVLIDPLASLAAVEEFLWPR*****************************************************************************************************************************************************************************************************************************************************************LIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERFGGSDFISSDGSRLWNDIYTITYQ********************************************ILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELSGTGVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQ***************************V*RNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMW******************************VHAPLGLF**************QFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIV*****

*********************RADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLI***************TYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQG*IS*P**************************************LLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQ*******************************************************************************************************************************************ISATKEEYLIGVISEMLAELS**DGVSTFEFIGSGVVAALLNYFSCG**************QQALKRFKSFI***************MTVLVQKLQNALSSLERFPV*************************FKLRL*************SNVVLIDPLASLAAVEEFLW********************************************************************************************************************************************************************************************************************************************************************IFTVGGKQLNRHLTIYQAIQ*************************LWNDIYTITYQRAD**********************************************************TILALLRVLEGLNQLAPRLRAQTVC*SYAEGKISSLDELSGTGVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSR*****************************QKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSSEN****************NISGDLVHAPLGLFPRPWPP*********FSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHL*****DNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKVAP

**************KKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLIST********SLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGP************************AREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILAGNTNT*******************************************************VEIPTVNSNLRSAVSASAKAFKEKYFPSDPGAAEVGVTDHLLHIKNLCMKLNAGVDD*****************DISATKEEYLIGVISEMLAELSTGDGVSTFEFIGSGVVAALLNYFSCGYKERMSEANMLKLRQQALKRFKSFIAVALPNSLDAGDVAPMTVLVQKLQNALSSLERFPVVL****************LSALSQPFKLRLCRAQGDKSLRDYSSNVVLIDPLASLAAVEEFLWPRVQRN********************************************LSVNIGDG****************************************************************DISPVEIDDALVIEDDDISDDEDDDHEDVLKDDSLPLCLSDKVHDVKLGD**********************************ADFRGGNSYGSRGAMSFAAAAMAGLGSANGRGVRGGRDRHGRPLFGSSNEPPKLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERFGGSDFISSDGSRLWNDIYTITYQRAD***********************************MSLLDSILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELSGTGVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRL***********VNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWR*********************TSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKVAP

***********GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASS*GKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLIL****************************************************************PTVNSNLRSAVSASAKAFKEKYFPSDPGAAEVGVTDHLLHIKNLCMKLNAGVDDQRTKAKGKSKASGSRLADISATKEEYLIGVISEMLAELSTGDGVSTFEFIGSGVVAALLNYFSCGYKERMSEANMLKLRQQALKRFKSFIAVALPNSLDAGDVAPMTVLVQKLQNALSSLERFPVVLSHSA*************SALSQPFKLRLCRAQGDKSLRDYSSNVVLIDPLASLAAVEEFLWPRVQR**************************************************************************************************************************EIDD*LVIEDDD*******DHEDVLKDDSLPLCLSDKVHDVKLGD**********************************************************************************NEPPKLIFTVGGKQLNRHLTIYQAIQRQLVLDE**********FISSDGSRLWNDIYTITYQRAD*******************************SASRMSLLDSILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELSGTGVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQ***************VGRLERQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWR************************ISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKVA*

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1661	2.2.26 [Sep-21-2011]
Q6WWW4		1888	E3 ubiquitin-protein liga	yes	no	0.984	0.866	0.766	0.0
Q9LYZ7		1502	E3 ubiquitin-protein liga	no	no	0.419	0.463	0.369	1e-131
F1RCR6		2026	E3 ubiquitin-protein liga	yes	no	0.346	0.284	0.372	1e-106
E1B7Q7		1992	E3 ubiquitin-protein liga	yes	no	0.352	0.293	0.375	1e-105
Q14669		1992	E3 ubiquitin-protein liga	yes	no	0.352	0.293	0.373	1e-105
F1LP64		2025	E3 ubiquitin-protein liga	yes	no	0.351	0.288	0.374	1e-105
G5E870		2025	E3 ubiquitin-protein liga	yes	no	0.351	0.288	0.374	1e-105
B4F6W9		2056	E3 ubiquitin-protein liga	yes	no	0.351	0.284	0.367	1e-104
P33202		1483	Ubiquitin fusion degradat	yes	no	0.260	0.291	0.360	3e-75
Q10435		1647	Probable ubiquitin fusion	yes	no	0.243	0.245	0.365	4e-72

>sp\|Q6WWW4\|UPL3_ARATH E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1	Back alignment and function desciption

 Score = 2440 bits (6324), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1267/1652 (76%), Positives = 1419/1652 (85%), Gaps = 16/1652 (0%)

Query: 9    HQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHE 68
            H +GR+KKILSGLRA+GEEGKQVEALTQLCEMLSIGTE+SLSTFSVDSF PVLVGLLNHE
Sbjct: 190  HLNGRMKKILSGLRAEGEEGKQVEALTQLCEMLSIGTEDSLSTFSVDSFVPVLVGLLNHE 249

Query: 69   SNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKIS 128
            SNPDIMLLAARALTHLCDVLPSSCAAVVHYGAV+C VARLLTIEYMDLAEQSLQALKKIS
Sbjct: 250  SNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSCLVARLLTIEYMDLAEQSLQALKKIS 309

Query: 129  QEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNL 188
            QEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDA+D+VMEAVPLLTNL
Sbjct: 310  QEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDASDYVMEAVPLLTNL 369

Query: 189  LQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLST 248
            LQYHD+KVLE+AS+CLTRIAEAFA  P+KLDELCNHGLVTQAA+LISTSNSGGGQASLS 
Sbjct: 370  LQYHDSKVLEYASICLTRIAEAFAPYPEKLDELCNHGLVTQAASLISTSNSGGGQASLSV 429

Query: 249  PTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIF 308
             TYTGLIRLLSTCASGSPL  +TLL LGIS ILKDIL GSGVSAN++V PALSRPA+QI+
Sbjct: 430  STYTGLIRLLSTCASGSPLGFRTLLLLGISSILKDILLGSGVSANASVSPALSRPADQIY 489

Query: 309  EIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKL 368
            EIVNLANELLPPLP+G ISLP+S+N  VKG   +KS  S+SGKQ+D      ++S REKL
Sbjct: 490  EIVNLANELLPPLPEGVISLPTSTNALVKGSCQKKSSPSTSGKQEDI----LKISPREKL 545

Query: 369  LSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNI 428
            L DQPELLQQFG+DLLPVL+QIYGSSVN  +RHKCLSVIGKLMYFSS+EMIQSL+  TNI
Sbjct: 546  LGDQPELLQQFGLDLLPVLVQIYGSSVNGTIRHKCLSVIGKLMYFSSSEMIQSLIGDTNI 605

Query: 429  SSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILAGNTNTVP 488
            SSFLAGVLAWKDP VL+P+LQ+AEILMEKLP TFSK+FVREGVVHAVDQL+L G     P
Sbjct: 606  SSFLAGVLAWKDPQVLVPALQVAEILMEKLPETFSKVFVREGVVHAVDQLVLVGK----P 661

Query: 489  SQASSADKDNDSIPGSSRSRRYRRRSGNANPECNSSEESKNPVSVNVGSPPSSVEIPTVN 548
            S AS  DKDND +PGS+RSRRYRRRS NAN + N SEE KNP S+ +G+  +S++ PT +
Sbjct: 662  SHASPTDKDNDCVPGSARSRRYRRRSSNANSDGNQSEEPKNPASLTIGANHNSLDTPTAS 721

Query: 549  SNLRSAVSASAKAFKEKYFPSDPGAAEVGVTDHLLHIKNLCMKLNAGVDDQRTKAKGKSK 608
              LR  VS+ AKAFK+KYFPSD G  +VGVTD LLH+KNLC KL AG+DD + K KGKSK
Sbjct: 722  FMLRETVSSCAKAFKDKYFPSDGGDVDVGVTDDLLHLKNLCTKLTAGIDDHKVKGKGKSK 781

Query: 609  ASGSRLADISATKEEYLIGVISEMLAELSTGDGVSTFEFIGSGVVAALLNYFSCGY--KE 666
            ASG  L D SA+KEEYLIGVISE+L E+S GDGVSTFEFIGSGVVAALLNYFSCGY  KE
Sbjct: 782  ASGPFLGDFSASKEEYLIGVISEILGEISKGDGVSTFEFIGSGVVAALLNYFSCGYFSKE 841

Query: 667  RMSEANMLKLRQQALKRFKSFIAVALPNSLDAGDVAPMTVLVQKLQNALSSLERFPVVLS 726
            ++SE N+ KLRQ+ L+RFK+F+ VALP   + G V PMTVL+QKLQNALSSLERFPVVLS
Sbjct: 842  KISELNLPKLRQEGLRRFKAFLEVALPFDGNEGKVPPMTVLIQKLQNALSSLERFPVVLS 901

Query: 727  HSARSSTGSARLSSGLSALSQPFKLRLCRAQGDKSLRDYSSNVVLIDPLASLAAVEEFLW 786
            H +RS +GSARLSSGLSAL+ P KLRLCRA G+K+LRDYSSN+VLIDPLASLAAVEEFLW
Sbjct: 902  HPSRSLSGSARLSSGLSALAHPLKLRLCRASGEKTLRDYSSNIVLIDPLASLAAVEEFLW 961

Query: 787  PRVQRNESGQKPSASVGNSESGTAPTGAGASSPSTSTPASSALRHSSRSRLSVNIGDGMK 846
            PRVQR+ES  KP+A +GN+E GT P+GAG SSPS+STPAS+  RHSSRSR ++NIGD  K
Sbjct: 962  PRVQRSESALKPAAPIGNTEPGTLPSGAGVSSPSSSTPASTTRRHSSRSRSAINIGDTSK 1021

Query: 847  KEPSQEKGTSSSKGKGKAVLKSAQEEVRGPQTRNAARRRAALDKDAQMKQANGDSSSEDE 906
            K+P  EKGTSSSKGKGK V+K AQ + +GPQTR+ A++RA LDKD QMK A+GDSSSEDE
Sbjct: 1022 KDPVHEKGTSSSKGKGKGVMKPAQAD-KGPQTRSNAQKRAVLDKDTQMKPASGDSSSEDE 1080

Query: 907  ELDISPVEIDDALVIEDDDISDDEDDDHEDVLKDDSLPLCLSDKVHDVKLGDSAEDSTTV 966
            EL+ISPV+IDDALVIE +D   D++DD  + + DDSLP+C  DKVHDVKL DS +D    
Sbjct: 1081 ELEISPVDIDDALVIE-EDDISDDEDDDNEDVLDDSLPMCTPDKVHDVKLADSVDDDGL- 1138

Query: 967  PSASDSQNNPASGSSSRGATGRGSDSADFRGGNSYGSRGAMSFAAAAMAGLGSANGRGVR 1026
             + S  Q NPASG +S  A  R SDS D   GNSYGSRGA+SFAAAAMAGLG+A+GRG+R
Sbjct: 1139 -ATSGRQMNPASGGTSGAAAARASDSIDTGIGNSYGSRGALSFAAAAMAGLGAASGRGIR 1197

Query: 1027 GGRDRHGRPLFGSSNEPPKLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERFGGSDFIS 1086
            G RD HGR L  SS+EP KLIFT  GKQL+RHLTIYQA+QRQL+LDED+D+RFGGSD +S
Sbjct: 1198 GSRDLHGRTLNRSSDEPSKLIFTAAGKQLSRHLTIYQAVQRQLMLDEDDDDRFGGSDLVS 1257

Query: 1087 SDGSRLWNDIYTITYQRADSQADRMSAGVSSSATPSKSSKSGSASNSNSDSASRMSLLDS 1146
            SDGSR +NDIYTI YQR DSQ +R+S G +SS TPSKS+KS + ++S    + R SLLDS
Sbjct: 1258 SDGSR-FNDIYTIMYQRPDSQVNRLSVGGASSTTPSKSTKSATTNSSVESQSHRASLLDS 1316

Query: 1147 ILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELSGTG 1206
            ILQGELPCDLEKSN TY +LALLRVLEGLNQL PRLRAQT+ D +AEGKI+SLD+LS T 
Sbjct: 1317 ILQGELPCDLEKSNSTYNVLALLRVLEGLNQLCPRLRAQTLSDRFAEGKITSLDDLSTTA 1376

Query: 1207 VRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTA 1266
             +VP +EF+NSKLTPKLARQIQDALALCSGSLPSWCYQLT+ACPFLFPF+TRRQYFYSTA
Sbjct: 1377 AKVPLDEFVNSKLTPKLARQIQDALALCSGSLPSWCYQLTRACPFLFPFQTRRQYFYSTA 1436

Query: 1267 FGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYSSQKA 1326
            FGLSRAL RLQQQQGADG GS NERE+R+GRL+RQKVRVSRNRILDSAAKVMEMYSSQKA
Sbjct: 1437 FGLSRALNRLQQQQGADGSGSTNEREMRIGRLQRQKVRVSRNRILDSAAKVMEMYSSQKA 1496

Query: 1327 VLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTS 1386
            VLEVEYFGEVGTGLGPTLEFYTLLS DLQ+  L MWRS SS +  SM+I  DE + GK S
Sbjct: 1497 VLEVEYFGEVGTGLGPTLEFYTLLSHDLQKASLGMWRS-SSGDKVSMQIGRDEIEDGKPS 1555

Query: 1387 NISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFST 1446
              + D+V APLGLFPRPWP +AD SEGGQF KVIEYFRLLGRVMAKALQDGRLLD+P ST
Sbjct: 1556 AANRDIVLAPLGLFPRPWPSTADISEGGQFHKVIEYFRLLGRVMAKALQDGRLLDVPLST 1615

Query: 1447 AFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAP 1506
            AFYKL+LG ELDLHDI+ FDAE GK LQEL V+V RK +LE +  DN   + DL  RG  
Sbjct: 1616 AFYKLILGQELDLHDIVLFDAELGKTLQELRVVVARKHYLEGVGGDNSSTISDLCLRGCR 1675

Query: 1507 IEDLCLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQV 1566
            IEDL L+FTLPGYP+YIL+ GDE VDI NLEEYISLVVDATVK G+ RQ+EAFR+GFNQV
Sbjct: 1676 IEDLSLEFTLPGYPEYILRSGDEIVDITNLEEYISLVVDATVKRGVTRQIEAFRSGFNQV 1735

Query: 1567 FDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPD 1626
            FDITSLQIFTP ELD+LLCGRRELWE   LAEHIKFDHGY AKSPAI+NLLEIMGE T D
Sbjct: 1736 FDITSLQIFTPSELDYLLCGRRELWEVETLAEHIKFDHGYNAKSPAIINLLEIMGELTAD 1795

Query: 1627 QQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRK 1658
            QQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRK
Sbjct: 1796 QQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRK 1827

Probable E3 ubiquitin-protein ligase which mediates ubiquitination and subsequent proteasomal degradation of target proteins. Involved in the repression of endoreduplication process and the cell morphogenesis in the trichomes.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp\|Q9LYZ7\|UPL4_ARATH E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=1 SV=1	Back alignment and function description

>sp\|F1RCR6\|TRIPC_DANRE E3 ubiquitin-protein ligase TRIP12 OS=Danio rerio GN=trip12 PE=2 SV=1	Back alignment and function description

>sp\|E1B7Q7\|TRIPC_BOVIN E3 ubiquitin-protein ligase TRIP12 OS=Bos taurus GN=TRIP12 PE=2 SV=2	Back alignment and function description

>sp\|Q14669\|TRIPC_HUMAN E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1 SV=1	Back alignment and function description

>sp\|F1LP64\|TRIPC_RAT E3 ubiquitin-protein ligase TRIP12 OS=Rattus norvegicus GN=Trip12 PE=2 SV=1	Back alignment and function description

>sp\|G5E870\|TRIPC_MOUSE E3 ubiquitin-protein ligase TRIP12 OS=Mus musculus GN=Trip12 PE=1 SV=1	Back alignment and function description

>sp\|B4F6W9\|TRIPC_XENTR E3 ubiquitin-protein ligase TRIP12 OS=Xenopus tropicalis GN=trip12 PE=2 SV=1	Back alignment and function description

>sp\|P33202\|UFD4_YEAST Ubiquitin fusion degradation protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UFD4 PE=1 SV=1	Back alignment and function description

>sp\|Q10435\|YDE1_SCHPO Probable ubiquitin fusion degradation protein C12B10.01c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC12B10.01c PE=3 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1661
255579971		1899	hect ubiquitin-protein ligase, putative	0.989	0.865	0.852	0.0
225428013		1896	PREDICTED: E3 ubiquitin-protein ligase U	0.990	0.867	0.844	0.0
225428015		1814	PREDICTED: E3 ubiquitin-protein ligase U	0.977	0.895	0.834	0.0
356507840		1891	PREDICTED: E3 ubiquitin-protein ligase U	0.997	0.876	0.810	0.0
356544882		1877	PREDICTED: E3 ubiquitin-protein ligase U	0.983	0.870	0.818	0.0
356538640		1872	PREDICTED: E3 ubiquitin-protein ligase U	0.983	0.872	0.813	0.0
356516547		1895	PREDICTED: E3 ubiquitin-protein ligase U	0.997	0.874	0.793	0.0
449458610		1892	PREDICTED: E3 ubiquitin-protein ligase U	0.990	0.869	0.783	0.0
357473823		1881	E3 ubiquitin-protein ligase UPL3 [Medica	0.989	0.873	0.789	0.0
297801930		1884	hypothetical protein ARALYDRAFT_912310 [	0.984	0.868	0.773	0.0

>gi\|255579971\|ref\|XP_002530820.1\| hect ubiquitin-protein ligase, putative [Ricinus communis] gi\|223529612\|gb\|EEF31560.1\| hect ubiquitin-protein ligase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 2701 bits (7000), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1414/1658 (85%), Positives = 1517/1658 (91%), Gaps = 14/1658 (0%)

Query: 9    HQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHE 68
            HQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSF PVLVGLLNHE
Sbjct: 185  HQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGLLNHE 244

Query: 69   SNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKIS 128
            SNPDIMLLAARA+THLCDVLPSSCAAVVHYGAV+CFVARLLTIEYMDLAEQSLQALKKIS
Sbjct: 245  SNPDIMLLAARAITHLCDVLPSSCAAVVHYGAVSCFVARLLTIEYMDLAEQSLQALKKIS 304

Query: 129  QEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNL 188
            QEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNL
Sbjct: 305  QEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNL 364

Query: 189  LQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLST 248
            LQYHDAKVLEHASVCLTRIAEAFAS+P+KLDELCNHGLVTQAA+LISTSN+GGGQASLS 
Sbjct: 365  LQYHDAKVLEHASVCLTRIAEAFASAPEKLDELCNHGLVTQAASLISTSNAGGGQASLSP 424

Query: 249  PTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIF 308
            PTYTGLIRLLST ASGSPL AKTLL L ISGILKDILSGSGVSANS+VPPALSRPAEQIF
Sbjct: 425  PTYTGLIRLLSTFASGSPLGAKTLLLLEISGILKDILSGSGVSANSSVPPALSRPAEQIF 484

Query: 309  EIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKL 368
            EIVNLANELLPPLPQGTISLP+SSN+FVKGPVV+KSP+SSSGKQDD NGN  EVSAREKL
Sbjct: 485  EIVNLANELLPPLPQGTISLPASSNVFVKGPVVKKSPSSSSGKQDDLNGNVPEVSAREKL 544

Query: 369  LSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNI 428
            L DQPELLQQFGMDLLPVL+QIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLS+TNI
Sbjct: 545  LKDQPELLQQFGMDLLPVLLQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSITNI 604

Query: 429  SSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILAGNTNTVP 488
            SSFLAGVLAWKDPHVL+P+LQIAEILMEKLPGTFSKMFVREGVVHA+DQL+LAGN +T P
Sbjct: 605  SSFLAGVLAWKDPHVLVPALQIAEILMEKLPGTFSKMFVREGVVHAIDQLVLAGNPSTTP 664

Query: 489  SQASSADKDNDSIPGS-SRSRRYRRRSGNANPECNSSEESKNPVSVNVGSPPSSVEIPTV 547
            +QA S +KDND + G+ SRSRRY+RRSGN+N E +  EES++P+  NVGSPPSSVEIPTV
Sbjct: 665  TQAPSTEKDNDYVSGTSSRSRRYKRRSGNSNAEGSLLEESRSPIPTNVGSPPSSVEIPTV 724

Query: 548  NSNLRSAVSASAKAFKEKYFPSDPGAAEVGVTDHLLHIKNLCMKLNAGVDDQRTKAKGKS 607
            NS+LR AVS  AK+FK+KYFPSDPGA+EVGVTD LLH+KNLCMKLN GVDDQ+TKAKGKS
Sbjct: 725  NSSLRMAVSTCAKSFKDKYFPSDPGASEVGVTDDLLHLKNLCMKLNVGVDDQKTKAKGKS 784

Query: 608  KASGSRLADISATKEEYLIGVISEMLAELSTGDGVSTFEFIGSGVVAALLNYFSCGY--K 665
            KAS SR  D S  KEEYLIGVIS+MLAEL  GDGVSTFEFIGSGVVAALLNYFSCGY  K
Sbjct: 785  KASESRGIDGSINKEEYLIGVISDMLAELRKGDGVSTFEFIGSGVVAALLNYFSCGYFSK 844

Query: 666  ERMSEANMLKLRQQALKRFKSFIAVALPNSLDAGDVAPMTVLVQKLQNALSSLERFPVVL 725
            ER+SEAN+ KLRQQAL+RFK F+A++LP S +AG  APM VLVQKLQNALSSLERFPVVL
Sbjct: 845  ERISEANLSKLRQQALRRFKLFVALSLPYSTNAGSAAPMAVLVQKLQNALSSLERFPVVL 904

Query: 726  SHSARSSTGSARLSSGLSALSQPFKLRLCRAQGDKSLRDYSSNVVLIDPLASLAAVEEFL 785
            SHS+RSS GSARLSSGLSALSQPFKLRLCRAQG+KSLRDYSSNVVLIDPLASLAAVEEFL
Sbjct: 905  SHSSRSSGGSARLSSGLSALSQPFKLRLCRAQGEKSLRDYSSNVVLIDPLASLAAVEEFL 964

Query: 786  WPRVQRNESGQKPSASVGNSESGTAPTGAGASSPSTSTPASSALRHSSRSRLSVNIGDGM 845
            WPRVQR ESGQKPSASVGNSESGT P GAGA SPS STP+++  RHSSRSR SVNI D  
Sbjct: 965  WPRVQRGESGQKPSASVGNSESGTTPAGAGALSPSASTPSTTR-RHSSRSRSSVNI-DAA 1022

Query: 846  KKEPSQEKGTSSSKGKGKAVLKSAQEEVRGPQTRNAARRRAALDKDAQMKQANGDSSSED 905
            +KEP QEK TSSSKGKGKAV K AQEE +GPQTRN ARRRAALDKDAQMK  NGDSSSED
Sbjct: 1023 RKEPLQEKSTSSSKGKGKAVFKPAQEEAKGPQTRNVARRRAALDKDAQMKSVNGDSSSED 1082

Query: 906  EELDISPVEIDDALVIEDDDISDDEDDDHEDVLKDDSLPLCLSDKVHDVKLGDSAEDSTT 965
            EELDISPVEIDDALVIEDDDISDDEDDDHED+L+DD LP+C+ +KVHDVKLGD+ EDS+ 
Sbjct: 1083 EELDISPVEIDDALVIEDDDISDDEDDDHEDMLRDDPLPVCMPEKVHDVKLGDAPEDSSG 1142

Query: 966  VPSASDSQNNPASGSSSRGATGRGSDSADFRGGNSYGSRGAMSFAAAAMAGLGSANGRGV 1025
             P+ SDSQ NPASGSSSR AT RGS+S DFRGG+SYGSRGAMSFAAAAMAGL +ANGRG+
Sbjct: 1143 APATSDSQTNPASGSSSRAATVRGSESTDFRGGSSYGSRGAMSFAAAAMAGLATANGRGI 1202

Query: 1026 RGGRDRHGRPLFGSSNEPPKLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERFGGSDFI 1085
            RGGRDR GRPL G S++PPKLIFT GGKQLNRHLTIYQAIQRQLVLDED+D+R+ GSDFI
Sbjct: 1203 RGGRDRQGRPLLGGSSDPPKLIFTAGGKQLNRHLTIYQAIQRQLVLDEDDDDRYAGSDFI 1262

Query: 1086 SSDGSRLWNDIYTITYQRADSQADRMSAGVSSSATPSKSSKSGSASNSNSDSA-SRMSLL 1144
            SSDGSRLW+DIYTITYQRAD Q DR+S G SSS T  KS+K+GS   SNSD    +MSLL
Sbjct: 1263 SSDGSRLWSDIYTITYQRADGQPDRVSVGGSSSTT-LKSTKTGS---SNSDGQLHQMSLL 1318

Query: 1145 DSILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELSG 1204
            DSILQGELPCDLEKSNPTY ILALLRVL+GLNQLAPRLRAQ   D++AEG+IS+LD+LS 
Sbjct: 1319 DSILQGELPCDLEKSNPTYNILALLRVLDGLNQLAPRLRAQLFSDNFAEGQISNLDDLSA 1378

Query: 1205 TGVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYS 1264
            T  RVP EEF+NSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYS
Sbjct: 1379 TSSRVPAEEFVNSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYS 1438

Query: 1265 TAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYSSQ 1324
            TAFGLSRALYRLQQQQGADGHGS NERE+RVGRL+RQKVRVSRNRILDSAAKVMEMYSSQ
Sbjct: 1439 TAFGLSRALYRLQQQQGADGHGSANEREVRVGRLQRQKVRVSRNRILDSAAKVMEMYSSQ 1498

Query: 1325 KAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGK 1384
            KAVLEVEYFGEVGTGLGPTLEFYTLLS DLQ+V L MWRSNSSS+ PSMEID D  K+GK
Sbjct: 1499 KAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKVVLGMWRSNSSSDKPSMEIDEDGNKNGK 1558

Query: 1385 TSNIS----GDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLL 1440
             +N S     D+V APLGLFPRPWPPSADASEG QF K +EYFRL+GRVMAKALQDGRLL
Sbjct: 1559 VNNCSDAMGADVVQAPLGLFPRPWPPSADASEGSQFYKAVEYFRLVGRVMAKALQDGRLL 1618

Query: 1441 DLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDL 1500
            DLP STAFYKLVL  ELDL+DI+ FDAEFGK+LQELH +VCRK+ LES  +DN + + DL
Sbjct: 1619 DLPLSTAFYKLVLNQELDLYDILSFDAEFGKVLQELHALVCRKRFLESSGTDNLDAISDL 1678

Query: 1501 RFRGAPIEDLCLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDATVKTGIMRQMEAFR 1560
            RFRG  IEDLCLDFTLPGYPDYILKPGDE VD NNL+EYISLVVDATVK+GIMRQMEAFR
Sbjct: 1679 RFRGTLIEDLCLDFTLPGYPDYILKPGDETVDRNNLDEYISLVVDATVKSGIMRQMEAFR 1738

Query: 1561 AGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIM 1620
            AGFNQVFDI+SLQIF+P ELD+LLCGRRELWEP  L +HIKFDHGYTAKSPAI+NLLEIM
Sbjct: 1739 AGFNQVFDISSLQIFSPQELDYLLCGRRELWEPETLVDHIKFDHGYTAKSPAIINLLEIM 1798

Query: 1621 GEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRK 1658
            GEFTP+QQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRK
Sbjct: 1799 GEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRK 1836

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225428013\|ref\|XP_002278408.1\| PREDICTED: E3 ubiquitin-protein ligase UPL3-like isoform 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225428015\|ref\|XP_002278452.1\| PREDICTED: E3 ubiquitin-protein ligase UPL3-like isoform 2 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356507840\|ref\|XP_003522671.1\| PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Glycine max]	Back alignment and taxonomy information

>gi\|356544882\|ref\|XP_003540876.1\| PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Glycine max]	Back alignment and taxonomy information

>gi\|356538640\|ref\|XP_003537809.1\| PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Glycine max]	Back alignment and taxonomy information

>gi\|356516547\|ref\|XP_003526955.1\| PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Glycine max]	Back alignment and taxonomy information

>gi\|449458610\|ref\|XP_004147040.1\| PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Cucumis sativus] gi\|449489652\|ref\|XP_004158376.1\| PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|357473823\|ref\|XP_003607196.1\| E3 ubiquitin-protein ligase UPL3 [Medicago truncatula] gi\|355508251\|gb\|AES89393.1\| E3 ubiquitin-protein ligase UPL3 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|297801930\|ref\|XP_002868849.1\| hypothetical protein ARALYDRAFT_912310 [Arabidopsis lyrata subsp. lyrata] gi\|297314685\|gb\|EFH45108.1\| hypothetical protein ARALYDRAFT_912310 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1661
TAIR\|locus:2121224		1888	KAK "AT4G38600" [Arabidopsis t	0.988	0.869	0.670	0.0
UNIPROTKB\|Q0E4T3		718	Os02g0101700 "Os02g0101700 pro	0.369	0.855	0.694	1.9e-227
DICTYBASE\|DDB_G0287221		1898	DDB_G0287221 "armadillo repeat	0.275	0.241	0.433	1.8e-209
TAIR\|locus:2151306		1502	UPL4 "AT5G02880" [Arabidopsis	0.196	0.217	0.454	5.1e-202
ZFIN\|ZDB-GENE-041111-262		2095	trip12 "thyroid hormone recept	0.258	0.205	0.439	8.1e-164
UNIPROTKB\|Q14669		1992	TRIP12 "E3 ubiquitin-protein l	0.258	0.215	0.435	9.2e-159
UNIPROTKB\|J9NRQ4		2011	TRIP12 "Uncharacterized protei	0.258	0.213	0.435	1.3e-158
UNIPROTKB\|E1B7Q7		1992	TRIP12 "E3 ubiquitin-protein l	0.258	0.215	0.435	8e-158
UNIPROTKB\|E2R657		1993	TRIP12 "Uncharacterized protei	0.258	0.215	0.435	1e-157
UNIPROTKB\|B4F6W9		2056	trip12 "E3 ubiquitin-protein l	0.258	0.209	0.433	7.5e-157

TAIR\|locus:2121224 KAK "AT4G38600" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 5468 (1929.9 bits), Expect = 0., P = 0.
 Identities = 1112/1658 (67%), Positives = 1229/1658 (74%)

Query:     3 GSASSSHQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLV 62
             GSASSSH +GR+KKILSGLRA+GEEGKQVEALTQLCEMLSIGTE+SLSTFSVDSF PVLV
Sbjct:   184 GSASSSHLNGRMKKILSGLRAEGEEGKQVEALTQLCEMLSIGTEDSLSTFSVDSFVPVLV 243

Query:    63 GLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQ 122
             GLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAV+C VARLLTIEYMDLAEQSLQ
Sbjct:   244 GLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSCLVARLLTIEYMDLAEQSLQ 303

Query:   123 ALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAV 182
             ALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDA+D+VMEAV
Sbjct:   304 ALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDASDYVMEAV 363

Query:   183 PLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGG 242
             PLLTNLLQYHD+KVLE+AS+CLTRIAEAFA  P+KLDELCNHGLVTQAA+LISTSNSGGG
Sbjct:   364 PLLTNLLQYHDSKVLEYASICLTRIAEAFAPYPEKLDELCNHGLVTQAASLISTSNSGGG 423

Query:   243 QASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSR 302
             QASLS  TYTGLIRLLSTCASGSPL  +TLL LGIS ILKDIL GSGVSAN++V PALSR
Sbjct:   424 QASLSVSTYTGLIRLLSTCASGSPLGFRTLLLLGISSILKDILLGSGVSANASVSPALSR 483

Query:   303 PAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEV 362
             PA+QI+EIVNLANELLPPLP+G ISLP+S+N  VKG   +KS  S+SGKQ+D      ++
Sbjct:   484 PADQIYEIVNLANELLPPLPEGVISLPTSTNALVKGSCQKKSSPSTSGKQEDI----LKI 539

Query:   363 SAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSL 422
             S REKLL DQPELLQQFG+DLLPVL+QIYGSSVN  +RHKCLSVIGKLMYFSS+EMIQSL
Sbjct:   540 SPREKLLGDQPELLQQFGLDLLPVLVQIYGSSVNGTIRHKCLSVIGKLMYFSSSEMIQSL 599

Query:   423 LSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILAG 482
             +  TNISSFLAGVLAWKDP VL+P+LQ+AEILMEKLP TFSK+FVREGVVHAVDQL+L G
Sbjct:   600 IGDTNISSFLAGVLAWKDPQVLVPALQVAEILMEKLPETFSKVFVREGVVHAVDQLVLVG 659

Query:   483 NTNTVPSQASSADKDNDSIPGXXXXXXXXXXXGNANPECNSSEESKXXXXXXXXXXXXXX 542
                  PS AS  DKDND +PG            NAN + N SEE K              
Sbjct:   660 K----PSHASPTDKDNDCVPGSARSRRYRRRSSNANSDGNQSEEPKNPASLTIGANHNSL 715

Query:   543 EIPTVNSNLRSAVSASAKAFKEKYFPSDPGAAEVGVTDHLLHIKNLCMKLNAGVDDQRTX 602
             + PT +  LR  VS+ AKAFK+KYFPSD G  +VGVTD LLH+KNLC KL AG+DD +  
Sbjct:   716 DTPTASFMLRETVSSCAKAFKDKYFPSDGGDVDVGVTDDLLHLKNLCTKLTAGIDDHKVK 775

Query:   603 XXXXXXXXXXRLADISATKEEYLIGVISEMLAELSTGDGVSTFEFIGSGVVAALLNYFSC 662
                        L D SA+KEEYLIGVISE+L E+S GDGVSTFEFIGSGVVAALLNYFSC
Sbjct:   776 GKGKSKASGPFLGDFSASKEEYLIGVISEILGEISKGDGVSTFEFIGSGVVAALLNYFSC 835

Query:   663 GY--KERMSEANMLKLRQQALKRFKSFIAVALPNSLDAGDVAPMTVLVQKLQNALSSLER 720
             GY  KE++SE N+ KLRQ+ L+RFK+F+ VALP   + G V PMTVL+QKLQNALSSLER
Sbjct:   836 GYFSKEKISELNLPKLRQEGLRRFKAFLEVALPFDGNEGKVPPMTVLIQKLQNALSSLER 895

Query:   721 FPVVLSHXXXXXXXXXXXXXXXXXXXQPFKLRLCRAQGDKSLRDYSSNVVLIDPLASLAA 780
             FPVVLSH                    P KLRLCRA G+K+LRDYSSN+VLIDPLASLAA
Sbjct:   896 FPVVLSHPSRSLSGSARLSSGLSALAHPLKLRLCRASGEKTLRDYSSNIVLIDPLASLAA 955

Query:   781 VEEFLWPRVQRNESGQKPSASVGNSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVN 840
             VEEFLWPRVQR+ES  KP+A +GN+E                                +N
Sbjct:   956 VEEFLWPRVQRSESALKPAAPIGNTEPGTLPSGAGVSSPSSSTPASTTRRHSSRSRSAIN 1015

Query:   841 IGDGMKKEPSQEXXXXXXXXXXXAVLKSAQEEVRGPQTXXXXXXXXXLDKDAQMKQANGX 900
             IGD  KK+P  E            V+K AQ + +GPQT         LDKD QMK A+G 
Sbjct:  1016 IGDTSKKDPVHEKGTSSSKGKGKGVMKPAQAD-KGPQTRSNAQKRAVLDKDTQMKPASGD 1074

Query:   901 XXXXXXXXXISPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLCLSDKVHDVKLGDSA 960
                      ISP                               P+C  DKVHDVKL DS 
Sbjct:  1075 SSSEDEELEISPVDIDDALVIEEDDISDDEDDDNEDVLDDSL-PMCTPDKVHDVKLADSV 1133

Query:   961 EDSTTVPSASDSQNNPXXXXXXXXXXXXXXXXXDFRGGNSYXXXXXXXXXXXXXXXXXXX 1020
             +D     + S  Q NP                 D   GNSY                   
Sbjct:  1134 DDDGL--ATSGRQMNPASGGTSGAAAARASDSIDTGIGNSYGSRGALSFAAAAMAGLGAA 1191

Query:  1021 XXXXXXXXXXXXXXPLFGSSNEPPKLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERXX 1080
                            L  SS+EP KLIFT  GKQL+RHLTIYQA+QRQL+LDED+D+R  
Sbjct:  1192 SGRGIRGSRDLHGRTLNRSSDEPSKLIFTAAGKQLSRHLTIYQAVQRQLMLDEDDDDRFG 1251

Query:  1081 XXXXXXXXXXRLWNDIYTITYQRADSQADRMXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1140
                       R +NDIYTI YQR DSQ +R+                             
Sbjct:  1252 GSDLVSSDGSR-FNDIYTIMYQRPDSQVNRLSVGGASSTTPSKSTKSATTNSSVESQSHR 1310

Query:  1141 XXLLDSILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLD 1200
               LLDSILQGELPCDLEKSN TY +LALLRVLEGLNQL PRLRAQT+ D +AEGKI+SLD
Sbjct:  1311 ASLLDSILQGELPCDLEKSNSTYNVLALLRVLEGLNQLCPRLRAQTLSDRFAEGKITSLD 1370

Query:  1201 ELSGTGVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQ 1260
             +LS T  +VP +EF+NSKLTPKLARQIQDALALCSGSLPSWCYQLT+ACPFLFPF+TRRQ
Sbjct:  1371 DLSTTAAKVPLDEFVNSKLTPKLARQIQDALALCSGSLPSWCYQLTRACPFLFPFQTRRQ 1430

Query:  1261 YFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEM 1320
             YFYSTAFGLSRAL RLQQQQGADG GS NERE+R+GRL+RQKVRVSRNRILDSAAKVMEM
Sbjct:  1431 YFYSTAFGLSRALNRLQQQQGADGSGSTNEREMRIGRLQRQKVRVSRNRILDSAAKVMEM 1490

Query:  1321 YSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEG 1380
             YSSQKAVLEVEYFGEVGTGLGPTLEFYTLLS DLQ+  L MWRS SS +  SM+I  DE 
Sbjct:  1491 YSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKASLGMWRS-SSGDKVSMQIGRDEI 1549

Query:  1381 KSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLL 1440
             + GK S  + D+V APLGLFPRPWP +AD SEGGQF KVIEYFRLLGRVMAKALQDGRLL
Sbjct:  1550 EDGKPSAANRDIVLAPLGLFPRPWPSTADISEGGQFHKVIEYFRLLGRVMAKALQDGRLL 1609

Query:  1441 DLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDL 1500
             D+P STAFYKL+LG ELDLHDI+ FDAE GK LQEL V+V RK +LE +  DN   + DL
Sbjct:  1610 DVPLSTAFYKLILGQELDLHDIVLFDAELGKTLQELRVVVARKHYLEGVGGDNSSTISDL 1669

Query:  1501 RFRGAPIEDLCLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDATVKTGIMRQMEAFR 1560
               RG  IEDL L+FTLPGYP+YIL+ GDE VDI NLEEYISLVVDATVK G+ RQ+EAFR
Sbjct:  1670 CLRGCRIEDLSLEFTLPGYPEYILRSGDEIVDITNLEEYISLVVDATVKRGVTRQIEAFR 1729

Query:  1561 AGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIM 1620
             +GFNQVFDITSLQIFTP ELD+LLCGRRELWE   LAEHIKFDHGY AKSPAI+NLLEIM
Sbjct:  1730 SGFNQVFDITSLQIFTPSELDYLLCGRRELWEVETLAEHIKFDHGYNAKSPAIINLLEIM 1789

Query:  1621 GEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRK 1658
             GE T DQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRK
Sbjct:  1790 GELTADQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRK 1827

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IBA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IBA

GO:0010091 "trichome branching" evidence=IMP

GO:0042023 "DNA endoreduplication" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016926 "protein desumoylation" evidence=RCA

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA

UNIPROTKB\|Q0E4T3 Os02g0101700 "Os02g0101700 protein" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0287221 DDB_G0287221 "armadillo repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

TAIR\|locus:2151306 UPL4 "AT5G02880" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-041111-262 trip12 "thyroid hormone receptor interactor 12" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|Q14669 TRIP12 "E3 ubiquitin-protein ligase TRIP12" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|J9NRQ4 TRIP12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E1B7Q7 TRIP12 "E3 ubiquitin-protein ligase TRIP12" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R657 TRIP12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|B4F6W9 trip12 "E3 ubiquitin-protein ligase TRIP12" [Xenopus (Silurana) tropicalis (taxid:8364)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6WWW4	UPL3_ARATH	6, ., 3, ., 2, ., -	0.7669	0.9849	0.8665	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1661
cd00078		352	cd00078, HECTc, HECT domain; C-terminal catalytic	8e-95
smart00119		328	smart00119, HECTc, Domain Homologous to E6-AP Carb	3e-72
pfam00632		298	pfam00632, HECT, HECT-domain (ubiquitin-transferas	4e-68
COG5021		872	COG5021, HUL4, Ubiquitin-protein ligase [Posttrans	4e-59
cd00020		120	cd00020, ARM, Armadillo/beta-catenin-like repeats	3e-08
pfam03153		332	pfam03153, TFIIA, Transcription factor IIA, alpha/	1e-05
COG5064		526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	9e-05
PRK05901		509	PRK05901, PRK05901, RNA polymerase sigma factor; P	1e-04
COG5064		526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	0.001
pfam11705		221	pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym	0.003

>gnl\|CDD\|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3)	Back alignment and domain information

 Score =  310 bits (796), Expect = 8e-95
 Identities = 130/366 (35%), Positives = 182/366 (49%), Gaps = 59/366 (16%)

Query: 1301 QKVRVSRNRILDSAAKVMEMYSSQ--KAVLEVEYFGEVGTG-LGPTLEFYTLLSRDLQRV 1357
             K+ V R+RIL+ A + +   SS   K VLEVE+ GE G    G T EF+TL+S++L   
Sbjct: 1    LKITVRRDRILEDALRQLSKVSSSDLKKVLEVEFVGEEGIDAGGVTREFFTLVSKELFNP 60

Query: 1358 GLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFS 1417
               ++R                                   L+P P   + +        
Sbjct: 61   SYGLFRYTPDDSG---------------------------LLYPNPSSFADE-------- 85

Query: 1418 KVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELH 1477
              ++ FR LGR++ KAL +GRLLDLPFS AFYK +LG  L L D+   D E  K L+EL 
Sbjct: 86   DHLKLFRFLGRLLGKALYEGRLLDLPFSRAFYKKLLGKPLSLEDLEELDPELYKSLKEL- 144

Query: 1478 VIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPG--DENVDINN 1535
                          D  E+ ++L F       + LD +  G     LKPG  D  V   N
Sbjct: 145  ---------LDNDGD--EDDLELTF------TIELDSSFGGAVTVELKPGGRDIPVTNEN 187

Query: 1536 LEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAA 1595
             EEY+ L VD  +  GI  Q+EAFR GF++V     L +FTP EL+ L+CG  +  +   
Sbjct: 188  KEEYVDLYVDYRLNKGIEEQVEAFRDGFSEVIPEELLSLFTPEELELLICGSED-IDLED 246

Query: 1596 LAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTI 1655
            L ++ ++  GY++ SP I    E++  FT ++++ F QFVTG+ RLP GG A LNPK TI
Sbjct: 247  LKKNTEYKGGYSSDSPTIQWFWEVLESFTNEERKKFLQFVTGSSRLPVGGFADLNPKFTI 306

Query: 1656 VRKVAP 1661
             R  +P
Sbjct: 307  RRVGSP 312

It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains. Length = 352

>gnl\|CDD\|214523 smart00119, HECTc, Domain Homologous to E6-AP Carboxyl Terminus with	Back alignment and domain information

>gnl\|CDD\|216035 pfam00632, HECT, HECT-domain (ubiquitin-transferase)	Back alignment and domain information

>gnl\|CDD\|227354 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>gnl\|CDD\|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats	Back alignment and domain information

>gnl\|CDD\|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit	Back alignment and domain information

>gnl\|CDD\|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>gnl\|CDD\|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional	Back alignment and domain information

>gnl\|CDD\|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>gnl\|CDD\|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1661
KOG0170		621	consensus E3 ubiquitin protein ligase [Posttransla	100.0
KOG0168		1051	consensus Putative ubiquitin fusion degradation pr	100.0
KOG0941		850	consensus E3 ubiquitin protein ligase [Posttransla	100.0
COG5021		872	HUL4 Ubiquitin-protein ligase [Posttranslational m	100.0
KOG0942		1001	consensus E3 ubiquitin protein ligase [Posttransla	100.0
cd00078		352	HECTc HECT domain; C-terminal catalytic domain of	100.0
smart00119		336	HECTc Domain Homologous to E6-AP Carboxyl Terminus	100.0
KOG4427		1096	consensus E3 ubiquitin protein ligase [Posttransla	100.0
KOG0939		720	consensus E3 ubiquitin-protein ligase/Putative ups	100.0
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	100.0
PF00632		317	HECT: HECT-domain (ubiquitin-transferase); InterPr	100.0
KOG0940		358	consensus Ubiquitin protein ligase RSP5/NEDD4 [Pos	99.98
KOG0943		3015	consensus Predicted ubiquitin-protein ligase/hyper	99.96
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	99.96
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.94
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	99.93
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	99.92
KOG4224		550	consensus Armadillo repeat protein VAC8 required f	99.69
KOG4224		550	consensus Armadillo repeat protein VAC8 required f	99.64
KOG0168		1051	consensus Putative ubiquitin fusion degradation pr	99.6
PF05804		708	KAP: Kinesin-associated protein (KAP)	99.48
PF05804		708	KAP: Kinesin-associated protein (KAP)	99.23
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.19
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.17
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	99.1
KOG4199		461	consensus Uncharacterized conserved protein [Funct	99.09
KOG1048		717	consensus Neural adherens junction protein Plakoph	99.07
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.97
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	98.92
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	98.92
KOG4199		461	consensus Uncharacterized conserved protein [Funct	98.9
KOG2122		2195	consensus Beta-catenin-binding protein APC, contai	98.48
PTZ00429		746	beta-adaptin; Provisional	98.44
PRK09687		280	putative lyase; Provisional	98.43
KOG1048		717	consensus Neural adherens junction protein Plakoph	98.41
PRK09687		280	putative lyase; Provisional	98.36
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.31
KOG2122		2195	consensus Beta-catenin-binding protein APC, contai	98.29
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.28
cd00256		429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.26
PTZ00429		746	beta-adaptin; Provisional	98.23
PF03224		312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.23
KOG2160		342	consensus Armadillo/beta-catenin-like repeat-conta	98.13
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	98.05
KOG4500		604	consensus Rho/Rac GTPase guanine nucleotide exchan	98.01
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.0
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	97.92
KOG2160		342	consensus Armadillo/beta-catenin-like repeat-conta	97.91
KOG1293		678	consensus Proteins containing armadillo/beta-caten	97.9
KOG4500		604	consensus Rho/Rac GTPase guanine nucleotide exchan	97.87
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	97.82
cd00256		429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	97.8
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	97.76
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	97.74
PF00514		41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.74
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.72
PF03224		312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	97.72
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	97.7
KOG1293		678	consensus Proteins containing armadillo/beta-caten	97.61
KOG2759		442	consensus Vacuolar H+-ATPase V1 sector, subunit H	97.53
KOG1222		791	consensus Kinesin associated protein KAP [Intracel	97.49
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	97.46
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.36
KOG2759		442	consensus Vacuolar H+-ATPase V1 sector, subunit H	97.29
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	97.26
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	97.23
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	97.05
KOG3678		832	consensus SARM protein (with sterile alpha and arm	96.94
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	96.92
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	96.9
KOG4646		173	consensus Uncharacterized conserved protein, conta	96.83
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	96.79
KOG1061		734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	96.79
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	96.72
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	96.72
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.7
KOG1222		791	consensus Kinesin associated protein KAP [Intracel	96.69
KOG1242		569	consensus Protein containing adaptin N-terminal re	96.67
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	96.66
PF05536		543	Neurochondrin: Neurochondrin	96.66
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.61
smart00185		41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	96.51
PF05536		543	Neurochondrin: Neurochondrin	96.4
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	96.4
PF13764		802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.38
COG5369		743	Uncharacterized conserved protein [Function unknow	96.29
PF00514		41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	96.28
KOG3678		832	consensus SARM protein (with sterile alpha and arm	96.28
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	96.25
PF14664		371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	95.97
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	95.93
KOG1824		1233	consensus TATA-binding protein-interacting protein	95.93
PF10165		446	Ric8: Guanine nucleotide exchange factor synembryn	95.9
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	95.83
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	95.79
KOG1517		1387	consensus Guanine nucleotide binding protein MIP1	95.72
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	95.68
TIGR02270		410	conserved hypothetical protein. Members are found	95.64
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	95.54
COG1413		335	FOG: HEAT repeat [Energy production and conversion	95.51
TIGR02270		410	conserved hypothetical protein. Members are found	95.46
COG5096		757	Vesicle coat complex, various subunits [Intracellu	95.41
PF05004		309	IFRD: Interferon-related developmental regulator (	95.37
KOG1242		569	consensus Protein containing adaptin N-terminal re	95.28
PF14664		371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	95.26
PF10165		446	Ric8: Guanine nucleotide exchange factor synembryn	95.13
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	95.1
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	95.05
KOG4646		173	consensus Uncharacterized conserved protein, conta	95.03
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	94.94
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	94.93
KOG1517		1387	consensus Guanine nucleotide binding protein MIP1	94.84
COG5369		743	Uncharacterized conserved protein [Function unknow	94.82
KOG2137		700	consensus Protein kinase [Signal transduction mech	94.53
KOG1789		2235	consensus Endocytosis protein RME-8, contains DnaJ	94.5
smart00185		41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	94.48
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	94.27
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	94.12
KOG0414		1251	consensus Chromosome condensation complex Condensi	94.02
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	93.81
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	93.6
COG5656		970	SXM1 Importin, protein involved in nuclear import	93.5
PF11698		119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	93.34
KOG4413		524	consensus 26S proteasome regulatory complex, subun	93.09
KOG1061		734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	92.97
KOG1824		1233	consensus TATA-binding protein-interacting protein	92.63
PF07814		361	WAPL: Wings apart-like protein regulation of heter	92.54
KOG2973		353	consensus Uncharacterized conserved protein [Funct	92.51
KOG0212		675	consensus Uncharacterized conserved protein [Funct	92.37
PF06371		187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	91.92
COG5096		757	Vesicle coat complex, various subunits [Intracellu	91.84
PF11864		464	DUF3384: Domain of unknown function (DUF3384); Int	91.54
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	91.36
KOG1820		815	consensus Microtubule-associated protein [Cytoskel	90.99
KOG2973		353	consensus Uncharacterized conserved protein [Funct	90.77
KOG3036		293	consensus Protein involved in cell differentiation	90.76
KOG0212		675	consensus Uncharacterized conserved protein [Funct	90.52
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	90.51
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	90.47
COG1413		335	FOG: HEAT repeat [Energy production and conversion	90.27
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	90.03
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	90.01
KOG1248		1176	consensus Uncharacterized conserved protein [Funct	89.36
PF11865		160	DUF3385: Domain of unknown function (DUF3385); Int	89.2
PF11841		160	DUF3361: Domain of unknown function (DUF3361)	88.88
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	88.75
PF09759		102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	88.72
KOG4653		982	consensus Uncharacterized conserved protein [Funct	88.36
KOG4535		728	consensus HEAT and armadillo repeat-containing pro	88.11
KOG4413		524	consensus 26S proteasome regulatory complex, subun	87.98
KOG2956		516	consensus CLIP-associating protein [General functi	87.92
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	87.82
COG5240		898	SEC21 Vesicle coat complex COPI, gamma subunit [In	87.78
PF09759		102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	87.58
COG5231		432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	87.09
PF06025		379	DUF913: Domain of Unknown Function (DUF913); Inter	87.06
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	86.96
PF12530		234	DUF3730: Protein of unknown function (DUF3730) ; I	86.83
PF14668		73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	86.82
COG5231		432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	86.74
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	86.69
PF08569		335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	86.56
PF11841		160	DUF3361: Domain of unknown function (DUF3361)	86.14
KOG1248		1176	consensus Uncharacterized conserved protein [Funct	86.13
PF06025		379	DUF913: Domain of Unknown Function (DUF913); Inter	86.1
KOG2259		823	consensus Uncharacterized conserved protein [Funct	85.59
KOG2032		533	consensus Uncharacterized conserved protein [Funct	85.58
KOG1967		1030	consensus DNA repair/transcription protein Mms19 [	85.47
KOG1077		938	consensus Vesicle coat complex AP-2, alpha subunit	85.45
PF10363		92	DUF2435: Protein of unknown function (DUF2435)	85.33
KOG2734		536	consensus Uncharacterized conserved protein [Funct	85.31
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	85.31
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	85.03
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	84.31
KOG1077		938	consensus Vesicle coat complex AP-2, alpha subunit	84.27
COG5098		1128	Chromosome condensation complex Condensin, subunit	84.15
KOG1943		1133	consensus Beta-tubulin folding cofactor D [Posttra	83.72
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	83.67
PF12530		234	DUF3730: Protein of unknown function (DUF3730) ; I	83.67
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	83.41
KOG1020		1692	consensus Sister chromatid cohesion protein SCC2/N	83.33
KOG2259		823	consensus Uncharacterized conserved protein [Funct	83.25
KOG2956		516	consensus CLIP-associating protein [General functi	83.17
PF14500		262	MMS19_N: Dos2-interacting transcription regulator	81.3

>KOG0170 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=100.00  E-value=8.7e-124  Score=1070.00  Aligned_cols=570  Identities=52%  Similarity=0.835  Sum_probs=491.9

Q ss_pred             eEEEEECCeecCCCccHHHHHHHHhhcccccccccCCCCccCCCCCCCcccceEEEEEeCCCccccccCCCCCCCCCCCC
Q 000327         1045 KLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERFGGSDFISSDGSRLWNDIYTITYQRADSQADRMSAGVSSSATPSKS 1124 (1661)
Q Consensus      1045 ~l~f~~~g~~l~~~~Ti~~av~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ti~y~~~~~~~~~~~~~~~~~~~~~~~ 1124 (1661)
                      +|.|++.|+.+++++|+||||+|+..+.+++    ..++ +. .... |+.+|||+|++-+.......+++.+...++.+
T Consensus         1 ~l~f~~~g~~l~~~~t~yqav~~~~~~~e~e----~~s~-s~-~~~~-~~~t~~~~~~~~d~~~n~~~vg~~s~~~~~~~   73 (621)
T KOG0170|consen    1 RLQFYIGGHLLPRNLTVYQAVRQFSIQAEDE----DESN-PL-GRGG-WNKTYTIWYQREDSESNKDCVGGKRGRAQTAP   73 (621)
T ss_pred             CceEEeccccccccchHHHHHHHHhhhcccc----ccCC-cc-ccCc-chhhhhhhhhccchhhhhcccccccccccCCc
Confidence            4789999999999999999999998887643    1112 11 2233 99999999997554433334433222222222


Q ss_pred             CCCCCCCCCCCccccccchhhhhccCCCCCCccCCCChHHHHHHHHHHHHhhhhchhhhhcccccccccccccccccccC
Q 000327         1125 SKSGSASNSNSDSASRMSLLDSILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELSG 1204 (1661)
Q Consensus      1125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lL~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1204 (1661)
                      ++.........+.+|..+.+...+.     ..+..++.++++.|+|+  ....+|..                 ++++..
T Consensus        74 ~~~~~~n~~~~~~~h~~~~~~~~~~-----~~e~~~~~~~~i~l~rv--~~~~~~~~-----------------l~d~~~  129 (621)
T KOG0170|consen   74 TKTSPTNKKHDELSHDPSVSNPLLV-----PLENINPSLDVILLLRV--AIEGYWYY-----------------LDDLAM  129 (621)
T ss_pred             ccccCcCCchhhccCChhhcccccc-----chhhcCchHHHHHHHhh--cccchhhh-----------------hhhhhh
Confidence            2222111111122332222221111     23334578899999998  33444433                 334444


Q ss_pred             CCCCCCchhhhcccchHHHHHHHHHHHHHhcCCCchhHHhhhcCCCcccChhHHHHHHHhhhhchHHHHHHHHHhccCCC
Q 000327         1205 TGVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADG 1284 (1661)
Q Consensus      1205 ~~~~~~~~~F~~~kl~~kl~rql~~~l~~~s~~lp~w~~~l~~~~PFlfpfe~R~~~f~~~~fg~~R~i~~l~~~~~~~~ 1284 (1661)
                      ..+++|.++|+|+|||+|++||++||+++|+|.+|+||.+|++.|||||||+||+.|||+|+||++|++++|++.++.+.
T Consensus       130 ~~~~vp~sefiNsKLt~Kl~rql~d~l~v~sg~lp~w~~~L~~~cpfLfpf~Tr~~~f~~taFg~~R~~~~~k~~s~~~~  209 (621)
T KOG0170|consen  130 CKEIVPTSEFINSKLTAKLARQLQDPLVVASGALPDWSLFLTRRCPFLFPFDTRMLYFYSTAFGLSRAIQLLKNKSKGSK  209 (621)
T ss_pred             hhcCCChHHHHHHHhhHHHHHHhcCcceeecCCCChhhhhhhhcCCeeccHHHHHHHHHHHHhhhhhHHHHHhhcccCCC
Confidence            55889999999999999999999999999999999999999999999999999999999999999999999999887666


Q ss_pred             CCCCcchhhhcCccceeEEEEcCchHHHHHHHHHhhccCCcceEEEEEcCCcccCccchHHHHHHHHHHHhccCCCCccc
Q 000327         1285 HGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRS 1364 (1661)
Q Consensus      1285 ~~~~~~~~~~~grl~r~kv~V~R~~il~~a~~~l~~~~~~~~~LeV~F~gE~G~g~GptrEFf~lvs~el~~~~l~lf~~ 1364 (1661)
                      +.+.++...+.||++|+|++|+|++||++|.++|++|++++.+|||+|++|+|+|+|||+|||++||+||++++++|||+
T Consensus       210 ~~s~~e~~~~~grL~RkK~risR~~Il~sa~kvm~~ygss~~vLEIEY~~EvGTGLGPTLEFYtlVSk~fq~~sLgmWR~  289 (621)
T KOG0170|consen  210 DGSNDEALQQLGRLTRKKLRISRKTILASALKVMEKYGSSKAVLEIEYEEEVGTGLGPTLEFYTLVSKEFQRASLGMWRC  289 (621)
T ss_pred             CCCchHHhHhhcccchhhhhhhHHHHHHHHHHHHHHhcCCcceEEEEeccccccCCCcceeeHHHHHHHHhhcccccccc
Confidence            66667777889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccccCCCCCCCCCCCCCCCccccCCCCccCCCCCCCCCccCCCchhhHHHHHHhhhhhHHhhhcCCcccccC
Q 000327         1365 NSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPF 1444 (1661)
Q Consensus      1365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yv~~~~gLfP~P~~~~~~~~~~~~~~~~~~~F~~lG~llakAl~d~~~ldl~f 1444 (1661)
                      +.-    .+.+       +++ .++..||..+.||||.||++....+++   .++.++|++||+||||||+|+|++|+||
T Consensus       290 ~s~----s~~~-------~k~-~~~t~~v~~~sgLFp~P~~~ts~~se~---~kvi~~F~~LG~~vAkal~D~Rildlpl  354 (621)
T KOG0170|consen  290 NSV----SYRS-------GKP-QENTKDVYITSGLFPRPWPPTSNSSEN---EKVIELFRLLGTFVAKALQDGRILDLPL  354 (621)
T ss_pred             Cce----eecc-------CCC-CCCcchhhhccccCCCCCCCCCCchhH---HHHHHHHHHHHHHHHHHHhcCceEeeec
Confidence            753    2222       222 457889999999999999998766554   6899999999999999999999999999


Q ss_pred             cHHHHHHHhCCCCCcCchhhccHHHHHHHHHHHHHHhhhhhhhccccCcchhhhccccCCCccccccceeecCCCCceee
Q 000327         1445 STAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYIL 1524 (1661)
Q Consensus      1445 s~~f~K~llg~~~tl~DL~~vDp~l~~sL~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iedL~L~Ftl~g~~~ieL 1524 (1661)
                      +++|||+++|++++..|+..|||+++++|.+|...+.+|+.++...|+...+..+++++||.||||+|+||+||+++|||
T Consensus       355 s~~Fykl~l~q~Lt~~dv~~vd~~l~~sL~~Le~vv~~k~~~~~~~~d~~~a~~dltl~g~~iEdL~LdFTLPG~p~ieL  434 (621)
T KOG0170|consen  355 SKAFYKLILGQELTSHDVTTVDPELAKSLLELELVVPRKKKLEKYIGDVANADDDLTLNGCSIEDLSLDFTLPGFPDIEL  434 (621)
T ss_pred             cHHHHHHHhcCCcccccceecCHHHHHHHHHHHHHhhhhhhhhhhcccccccccceeecCcchhhceeeEecCCCCCeee
Confidence            99999999999999999999999999999999999999999988888888899999999999999999999999999999


Q ss_pred             CCCCc--ccccccHHHHHHHHHHHHHHhcHHHHHHHHHhhcccccccccccCCCHHHHHHhhcCCCCccCHHHHhhhcEe
Q 000327         1525 KPGDE--NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKF 1602 (1661)
Q Consensus      1525 ~pgG~--~VT~~N~~eYv~lv~~~~L~~~v~~q~~afr~GF~~V~p~~~L~~Fsp~EL~~ll~G~~e~wd~e~L~~~~~~ 1602 (1661)
                      +|||+  +||..|++|||+.|++|++++||.+|++|||.||++|||++.|++|+|+||+.|+||..++|+.++|++|+++
T Consensus       435 ~p~g~~~~V~~~NleEYi~~VId~tv~kGVqkQleAFr~GF~~VF~~~~Lqif~p~EL~~llcg~~e~ws~~TL~~~i~~  514 (621)
T KOG0170|consen  435 IPGGANKPVTISNLEEYIHGVIDATVGKGVQKQLEAFRSGFSSVFPYEHLQIFTPEELVTLLCGVEEDWSMATLMEHIKA  514 (621)
T ss_pred             ccCCCCCccccccHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhheeecCHHHHHHHhccchhhccHHHHHHhccc
Confidence            99999  9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCChHHHHHHHHHhcCCHHHHHHhcccccCCCCCCcCCccCCCCceEEEecCC
Q 000327         1603 DHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKVA 1660 (1661)
Q Consensus      1603 ~~Gyt~~s~~i~~Fwevl~~fs~eerr~FLqFvTGs~rLP~gGf~~L~P~ltIvrk~~ 1660 (1661)
                      |||||++||+|+.|++||+.|+.+|||.||||||||||||+|||++|||||||||||+
T Consensus       515 DHGYT~~Sp~i~~li~ils~f~~~qQR~FLQFvTGSprLPiGGfasLNPklTIVrKh~  572 (621)
T KOG0170|consen  515 DHGYTMDSPIIHDLISILSAFDKEQQRLFLQFVTGSPRLPIGGFASLNPKLTIVRKHA  572 (621)
T ss_pred             ccCccCCCcHHHHHHHHhhhhchHHHHHHHHHhcCCCCCCCCcccccCCCeEEEeccC
Confidence            9999999999999999999999999999999999999999999999999999999997

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3)	Back alignment and domain information

>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with	Back alignment and domain information

>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0939 consensus E3 ubiquitin-protein ligase/Putative upstream regulatory element binding protein [Posttranslational modification, protein turnover, chaperones; Transcription]	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' []	Back alignment and domain information

>KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF05804 KAP: Kinesin-associated protein (KAP)	Back alignment and domain information

>PF05804 KAP: Kinesin-associated protein (KAP)	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]	Back alignment and domain information

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]	Back alignment and domain information

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]	Back alignment and domain information

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF05536 Neurochondrin: Neurochondrin	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>smart00185 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PF05536 Neurochondrin: Neurochondrin	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	Back alignment and domain information

>COG5369 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless	Back alignment and domain information

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term	Back alignment and domain information

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>COG5369 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>smart00185 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D	Back alignment and domain information

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]	Back alignment and domain information

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length	Back alignment and domain information

>PF11841 DUF3361: Domain of unknown function (DUF3361)	Back alignment and domain information

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10	Back alignment and domain information

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2956 consensus CLIP-associating protein [General function prediction only]	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]	Back alignment and domain information

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10	Back alignment and domain information

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]	Back alignment and domain information

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length	Back alignment and domain information

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5	Back alignment and domain information

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis	Back alignment and domain information

>PF11841 DUF3361: Domain of unknown function (DUF3361)	Back alignment and domain information

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]	Back alignment and domain information

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF10363 DUF2435: Protein of unknown function (DUF2435)	Back alignment and domain information

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]	Back alignment and domain information

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2956 consensus CLIP-associating protein [General function prediction only]	Back alignment and domain information

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II	Back alignment and domain information

Homologous Structure Templates