Query 000329
Match_columns 1653
No_of_seqs 304 out of 728
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 04:35:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000329.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000329hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1848 Uncharacterized conser 100.0 7E-150 2E-154 1392.7 64.7 1496 1-1640 9-1608(1610)
2 PLN03076 ARF guanine nucleotid 100.0 9E-142 2E-146 1427.3 103.7 1063 4-1161 11-1514(1780)
3 KOG0929 Guanine nucleotide exc 100.0 2E-103 4E-108 1011.5 56.8 999 15-1160 12-1322(1514)
4 KOG0928 Pattern-formation prot 100.0 8E-74 1.7E-78 720.3 72.8 1015 24-1154 40-1353(1386)
5 PF12783 Sec7_N: Guanine nucle 100.0 9.3E-29 2E-33 268.4 17.7 156 224-387 3-168 (168)
6 COG5307 SEC7 domain proteins [ 99.9 5.4E-21 1.2E-25 248.4 25.0 734 254-1134 27-1011(1024)
7 PF09324 DUF1981: Domain of un 99.5 2.7E-14 5.9E-19 136.2 6.3 78 795-872 9-86 (86)
8 KOG1846 Uncharacterized conser 99.3 1.3E-08 2.9E-13 124.4 36.2 430 663-1154 846-1350(1777)
9 PLN03076 ARF guanine nucleotid 98.8 0.00033 7.2E-09 98.6 53.2 265 1326-1641 1437-1775(1780)
10 KOG1848 Uncharacterized conser 98.5 1.7E-06 3.6E-11 112.8 18.7 470 1097-1618 9-565 (1610)
11 KOG0930 Guanine nucleotide exc 96.8 0.00034 7.4E-09 77.6 0.4 32 440-471 153-202 (395)
12 KOG0931 Predicted guanine nucl 94.9 0.017 3.8E-07 68.5 3.1 29 439-467 289-338 (627)
13 PF01602 Adaptin_N: Adaptin N 93.5 31 0.00068 44.6 30.8 146 715-896 54-201 (526)
14 PTZ00429 beta-adaptin; Provisi 84.2 1.7E+02 0.0038 39.6 31.8 139 20-170 151-300 (746)
15 cd00171 Sec7 Sec7 domain; Doma 84.2 0.81 1.7E-05 50.8 3.2 32 439-470 93-143 (185)
16 KOG2023 Nuclear transport rece 82.8 1.7E+02 0.0036 38.3 27.7 157 683-874 127-285 (885)
17 PF12348 CLASP_N: CLASP N term 80.4 82 0.0018 35.9 18.0 175 718-921 27-210 (228)
18 smart00222 Sec7 Sec7 domain. D 80.2 1.4 3E-05 49.1 3.2 33 439-471 94-146 (187)
19 PF01369 Sec7: Sec7 domain; I 79.2 1.4 3E-05 49.3 2.8 33 438-470 96-148 (190)
20 PTZ00429 beta-adaptin; Provisi 77.9 2.7E+02 0.0059 37.8 27.0 62 13-80 109-170 (746)
21 PF01602 Adaptin_N: Adaptin N 73.4 2.3E+02 0.0051 36.5 21.6 100 51-161 80-179 (526)
22 PF02985 HEAT: HEAT repeat; I 70.9 7.4 0.00016 29.7 4.1 28 978-1005 2-29 (31)
23 KOG2171 Karyopherin (importin) 70.6 4.4E+02 0.0095 36.8 24.4 247 726-1085 27-276 (1075)
24 PF14500 MMS19_N: Dos2-interac 65.7 85 0.0018 37.0 13.4 75 818-895 96-171 (262)
25 PF12348 CLASP_N: CLASP N term 65.3 96 0.0021 35.3 13.7 104 254-368 23-126 (228)
26 PF11864 DUF3384: Domain of un 64.8 3.5E+02 0.0076 34.7 19.9 232 675-1003 208-464 (464)
27 KOG2160 Armadillo/beta-catenin 56.0 1.5E+02 0.0032 36.1 13.0 117 733-877 122-243 (342)
28 PF12717 Cnd1: non-SMC mitotic 54.0 1.4E+02 0.003 32.9 11.9 81 732-839 18-99 (178)
29 PF08427 DUF1741: Domain of un 53.7 3.1E+02 0.0068 31.8 14.8 68 968-1035 57-135 (237)
30 KOG2023 Nuclear transport rece 51.8 87 0.0019 40.6 10.6 162 734-916 123-284 (885)
31 PF02985 HEAT: HEAT repeat; I 51.6 30 0.00065 26.4 4.3 29 740-768 1-29 (31)
32 KOG1062 Vesicle coat complex A 51.6 7.7E+02 0.017 33.3 30.3 45 864-912 293-337 (866)
33 KOG1824 TATA-binding protein-i 48.9 6.8E+02 0.015 34.5 17.9 220 661-898 435-662 (1233)
34 KOG0929 Guanine nucleotide exc 46.4 73 0.0016 45.5 9.6 41 815-855 1185-1226(1514)
35 KOG1062 Vesicle coat complex A 45.9 9.3E+02 0.02 32.6 22.3 134 21-167 154-303 (866)
36 cd00020 ARM Armadillo/beta-cat 45.8 54 0.0012 32.5 6.6 73 740-835 8-80 (120)
37 KOG1993 Nuclear transport rece 44.3 9.8E+02 0.021 32.4 18.5 140 977-1162 527-691 (978)
38 KOG1248 Uncharacterized conser 44.2 7E+02 0.015 35.1 17.7 201 749-1024 664-875 (1176)
39 PF11640 TAN: Telomere-length 43.2 3.3E+02 0.0072 29.3 12.5 119 985-1135 13-141 (155)
40 KOG1949 Uncharacterized conser 41.3 3.1E+02 0.0066 36.2 13.0 109 987-1136 185-294 (1005)
41 PF12830 Nipped-B_C: Sister ch 38.8 1.2E+02 0.0026 33.8 8.5 89 49-142 7-96 (187)
42 PF09324 DUF1981: Domain of un 38.7 71 0.0015 30.9 5.8 53 1073-1131 33-85 (86)
43 PF12719 Cnd3: Nuclear condens 38.5 5.9E+02 0.013 30.5 14.9 104 739-870 27-139 (298)
44 KOG0166 Karyopherin (importin) 38.2 3.3E+02 0.0073 35.1 12.9 213 742-1034 155-375 (514)
45 PF12717 Cnd1: non-SMC mitotic 37.8 3.2E+02 0.0069 30.1 11.6 136 752-922 1-137 (178)
46 PF03378 CAS_CSE1: CAS/CSE pro 37.5 9.8E+02 0.021 30.5 24.4 277 734-1118 66-352 (435)
47 PF12719 Cnd3: Nuclear condens 36.6 3.7E+02 0.0081 32.2 12.8 66 20-85 75-149 (298)
48 PF05004 IFRD: Interferon-rela 34.0 9.2E+02 0.02 29.2 19.7 156 1072-1239 57-214 (309)
49 PF12783 Sec7_N: Guanine nucle 33.4 6E+02 0.013 27.5 12.7 87 682-770 8-104 (168)
50 KOG2274 Predicted importin 9 [ 32.8 1.3E+02 0.0028 40.5 8.2 92 266-364 551-645 (1005)
51 PF12755 Vac14_Fab1_bd: Vacuol 32.0 2.4E+02 0.0051 28.0 8.3 27 977-1004 69-95 (97)
52 PF10521 DUF2454: Protein of u 29.3 1E+03 0.022 28.4 14.7 160 970-1159 113-275 (282)
53 KOG1241 Karyopherin (importin) 28.7 1.6E+03 0.035 30.4 19.5 262 748-1133 10-287 (859)
54 PF12755 Vac14_Fab1_bd: Vacuol 27.5 1.4E+02 0.0031 29.6 5.9 70 803-874 27-96 (97)
55 cd00020 ARM Armadillo/beta-cat 27.0 1.6E+02 0.0034 29.0 6.5 69 13-81 11-80 (120)
56 PF08767 CRM1_C: CRM1 C termin 25.0 1E+03 0.022 28.9 13.9 116 804-921 72-198 (319)
57 PF08167 RIX1: rRNA processing 24.7 9.2E+02 0.02 26.2 12.4 100 262-373 4-109 (165)
58 PF10521 DUF2454: Protein of u 23.6 1.3E+03 0.028 27.4 17.2 67 1067-1137 85-151 (282)
59 KOG1766 Enhancer of rudimentar 23.5 1.2E+02 0.0027 29.4 4.3 48 1067-1114 15-65 (104)
60 KOG1824 TATA-binding protein-i 23.4 2.2E+03 0.047 30.1 23.1 215 51-348 520-747 (1233)
61 PLN03200 cellulose synthase-in 22.8 3.1E+03 0.066 31.6 23.4 315 740-1206 1529-1892(2102)
62 PF08767 CRM1_C: CRM1 C termin 21.5 4.7E+02 0.01 31.8 10.0 116 987-1138 82-198 (319)
63 PF11640 TAN: Telomere-length 21.3 5.6E+02 0.012 27.6 9.6 103 819-921 19-141 (155)
64 PF13646 HEAT_2: HEAT repeats; 21.0 5.7E+02 0.012 23.8 8.7 54 14-77 4-58 (88)
65 KOG2956 CLIP-associating prote 20.5 1E+03 0.022 30.3 12.3 113 976-1132 287-399 (516)
66 PF04826 Arm_2: Armadillo-like 20.2 9.2E+02 0.02 28.3 11.7 128 9-142 12-144 (254)
No 1
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6.9e-150 Score=1392.69 Aligned_cols=1496 Identities=31% Similarity=0.365 Sum_probs=1143.7
Q ss_pred CchHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHhCCCCCCc----ccC-chhHHHHHHHHhcCCCchhHHHHHHHHH
Q 000329 1 MALMAVLESDLRALSAEARRRYPAVKDGAEHAILKLRSLSSPSE----LAQ-SEDILRIFLMACEVRTVKLSVIGLSCIQ 75 (1653)
Q Consensus 1 m~~~~~L~~dL~~L~~EskRK~~~lk~A~e~al~~Lk~~~~~~~----~~~-~~~~l~PfllaC~skn~kl~~iaL~~lq 75 (1653)
|+++++|.+||++|++||||||++||+|||+++.+||+..++++ +.. +++|+.||++||++||.|++.|||+|||
T Consensus 9 ~sl~~aL~adLrsLsseArkKnn~VK~aAdkSi~~Lr~isS~s~ds~vlet~~edf~~PfllaC~sr~tRl~~ials~iQ 88 (1610)
T KOG1848|consen 9 MSLVRALLADLRSLSSEARKKNNEVKLAADKSIQELRQISSASRDSDVLETPNEDFLVPFLLACISRNTRLFVIALSCIQ 88 (1610)
T ss_pred HHHHHHHHHHHHHhhHHHHhhchHHHHHHHhHHHHHHhhccccccccccccCCcccccceeeecccCcccceeeHHHHHH
Confidence 78999999999999999999999999999999999999998876 444 8999999999999999999999999999
Q ss_pred HHHhcCCCCcchHHHH-HHHHHcccCCCCchHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHhhhcccCChHHHHHHH
Q 000329 76 KLISHDAVAPSALKEI-FSMLKNHADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQALGICLRLLENNRSSDSVRNTA 154 (1653)
Q Consensus 76 kLi~~~~i~~~~l~~I-l~~l~~~~~~~~e~vqLKILQ~L~~l~~s~~~~~~g~~L~~~L~~C~~L~~~sk~~~vv~~TA 154 (1653)
||+.|++++++...++ -+.||.+... +.+|||+||++|.++++|...++|+.|.+++.+||+||. +|++ +|.|||
T Consensus 89 kL~~~dsleps~~aeildn~L~a~~qa--e~~QLrvLQtiPii~~syl~fi~~p~l~kll~iCfnLl~-~knk-vV~NaA 164 (1610)
T KOG1848|consen 89 KLGRHDSLEPSVTAEILDNNLWAAAQA--EWIQLRVLQTIPIIFFSYLTFITGPPLLKLLIICFNLLY-QKNK-VVFNAA 164 (1610)
T ss_pred HHhccCCCCCcccHHHHHHHHHHHHHH--HHHHHhhhccccceeeeceeeccCcHHHHHHHHHHHHHc-CCCc-ceechh
Confidence 9999999999654444 4555544333 578999999999999999999999999999999999976 5778 999999
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCCCcCCCCCcccccccccccccccCCCCcccccccCCCCcchhhhhhhhhHHHHHHHH
Q 000329 155 AATFRQAVALIFDHVVRAESLPMGKFGSGAHITRTNSVTGDVSRSINHSESLEHEFASEGPSLRRETLTKAGKLGLRLLE 234 (1653)
Q Consensus 155 ~ATL~Qlv~~VF~rv~~ed~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~da~~vf~ 234 (1653)
+||+||+|..|||||..+++. .+..-+...+...++. +.-....+++..+|++..|.
T Consensus 165 aAtlrQlV~~vFdrv~ies~~----~d~~l~sl~~~s~t~s-------------------l~aa~~~~~~l~~dI~~~~~ 221 (1610)
T KOG1848|consen 165 AATLRQLVLLVFDRVPIESDA----FDFILPSLTEASGTSS-------------------LEAALTALDPLQKDICVGFE 221 (1610)
T ss_pred HHHHHHHHHHHHHhccccccc----ccccchhhhccCCccc-------------------hhhcccccchHHHhHhcchH
Confidence 999999999999999965431 1100000000000000 00013456788899999999
Q ss_pred HHHHhhcCCCCCcc-cccchhHHHHHHHHHHHHHhCchhhccCHHHH--HHHHHHHHHHHHHhhccccc-------C---
Q 000329 235 DLTALAAGGSASWL-HVNTLQRTFVLDILEFILSNHVSLFRMLVSYE--QVLRHQICSLLMTSLRTNVE-------N--- 301 (1653)
Q Consensus 235 dLc~L~~~e~p~~l-~~~~l~k~~~LELlesvL~n~~~~F~~hpel~--~llr~~lc~lLi~~ls~n~~-------~--- 301 (1653)
++|.+..+..++|| .+.+.++..|+|++|+++.+....|..|.+|+ ++++..+||++.|++..++. .
T Consensus 222 ~i~l~~~~~~~~~L~~Iee~~~s~~~elLesilks~~s~~dq~qdf~~a~ll~~~~~Py~~Rl~~~sv~~i~~l~~~ea~ 301 (1610)
T KOG1848|consen 222 NIQLMYPAIFDQLLAFIEESTKSPGLELLESILKSNASKSDQIQDFAPAELLALNVVPYAERLLLRSVDLIQKLACHEAV 301 (1610)
T ss_pred HHHHhcccccHhHHhcchhccccchhhhhhhhhhcchhhhHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHhccHHH
Confidence 99999999999998 78899999999999999999999999999999 99999999999997754421 0
Q ss_pred -------------------CCCCCCchHH--HHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 000329 302 -------------------EGETGEPYFR--RLVLRSVAHIIRLYSSSLITECEVFLSMLVKVTFLDLPLWHRILVLEIL 360 (1653)
Q Consensus 302 -------------------~~~~~~~~F~--~~~lRi~~~Li~~~~~~L~~E~EvfLs~Li~~l~~~~~~w~r~L~LEvl 360 (1653)
.+-.+...|+ .-..+.+......|-..+-.++++|++.+++.-+.+.+.|+|.+.+|++
T Consensus 302 ~~~ev~lnvi~slisn~~ll~~~~~~s~~~~kdlv~~l~~~v~l~~~~i~v~~~v~la~~lk~~s~~~~~~p~~l~~~~~ 381 (1610)
T KOG1848|consen 302 VNEEVLLNVIKSLISNTNLLFDPESLSYPCSKDLVWKLAVSVLLYVLSIGVPVAVFLASLLKFDSMDLELWPRFLDFLFL 381 (1610)
T ss_pred HHHHHHHHHHHHHHHhcccccchhhccccccHHHHhHHhHHHheeecccCcchhhhHHHHhhhhhcCcccCccHhHHHhh
Confidence 0000111111 1123334444555667888999999999999999999999999999999
Q ss_pred HHHhcChHHHHHHHHhcCCCCCCcchHHHHHHHHHHHhccccc-------cCCcHHHHHHhhh-cccCcccccccccccC
Q 000329 361 RGFCVEARTLRLLFQNFDMNPKNTNVVEGMVKALARVVSSVQF-------QETSEESLSAVAG-MFSSKAKGIEWILDND 432 (1653)
Q Consensus 361 ~~l~~dp~ll~~iy~nYD~~~~~~nI~~~li~~L~~~~~~~~~-------~~~s~e~l~~~~~-~f~~k~kGi~~ll~~d 432 (1653)
++++.+++.++.+++|+||++.+++++++.+..+.+++.-..+ ++...+..+.+.| .|..|.+||+|-.++|
T Consensus 382 ~siv~k~dsi~~~trn~diktk~thlldk~~~plan~vy~~lv~ti~nsi~e~l~k~s~esg~~eFt~k~k~Ie~~~dnd 461 (1610)
T KOG1848|consen 382 KSIVPKNDSIQIFTRNFDIKTKVTHLLDKEILPLANFVYKELVGTISNSIQEMLNKSSIESGGSEFTSKEKGIELREDND 461 (1610)
T ss_pred ccCCCCchhhHHHHhhcccCcchHHHHhhcccccchhHHHHHHHhhhHHHHHHHHHhHHhhcCccchhhhcCceeeccCc
Confidence 9999999999999999999999999999999999998874321 1222222333334 7888889999987777
Q ss_pred cCCCcccCcchhhhHHHHHHHHHHHHHHHHhhcccccccccccCCCcCCCCCCCCccC-chhHHHHHHHHHhhHHHHHHH
Q 000329 433 ASNAAVLVASEAHSITLAIEGLLGVVFTVATLTDEAVDVGEVLESPRCDYDPLPKCMG-ETAVLCISMVDSLWLTILDAL 511 (1653)
Q Consensus 433 ~~~~~~ll~~Ea~~I~~~~e~~a~~i~sv~~L~~~~~~~g~d~~~~~~~~~~~~~~~~-~~~~~~~~m~~~~W~~iLaal 511 (1653)
+....+++--+.-.+..+-|+++.+.++++.+...+.+.+. +..+.+.-.++..-.+ ...+..+.|+.+.|..+++++
T Consensus 462 s~stavl~~l~~~~~~li~e~~~ss~~avSt~~~~a~~v~~-l~~~~~~~s~k~~l~~~~kLe~i~~a~~snq~tildal 540 (1610)
T KOG1848|consen 462 SMSTAVLLQLSFSNKVLIPEGLYSSRMAVSTLLKRAQDVLH-LYIEDEVLSNKCPLPRQTKLEIIFDAVLSNQSTILDAL 540 (1610)
T ss_pred hHHHHHHHHHHhhhhhhccccchhhhHHHHHHHHHHHHHHH-HhhhhhhhccCCccccceeehhHHHHHhhccccHHHHh
Confidence 65444443334444455556666666666655444333332 1111110011111111 134456678999999999999
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCCCCCcccccc-cccCCCCCc-----------
Q 000329 512 SLILSRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNESDRRSA-VLQSPGSKR----------- 579 (1653)
Q Consensus 512 S~~l~~s~De~~~~~lL~gfq~~a~iag~l~L~~~rDafl~sL~k~t~~~~~~~~~~~~-~~~~p~s~~----------- 579 (1653)
+..+..+.|+.+.+.++.+++.++..||..+-+++..+++..||+|....+...+.... +.++|..++
T Consensus 541 ks~l~~st~e~is~qvl~s~stltsa~~~~~Ade~lna~~~~l~~~~~~s~r~vs~lr~l~s~Spv~gr~~~sew~~dfe 620 (1610)
T KOG1848|consen 541 KSTLPESTDEIISAQVLASYSTLTSACGRCSADEVLNALKEALVPFKDFSPRPVSRLRCLNSESPVVGRKMGSEWKIDFE 620 (1610)
T ss_pred hhhccccccchhhHHHHhchHHHHhccccccchhHHHHHHHhhCCcccCCccHHHHHhhccccCccccccCCcceEEEEe
Confidence 99999999999999999999999999999999999999999999999754322110000 001111000
Q ss_pred --------------c-cccccccCCccCChHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHhcC-CCCCCcccc
Q 000329 580 --------------S-ESLVDQKDNIVLTPKNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHS-PHATTQEVS 643 (1653)
Q Consensus 580 --------------~-~~~~~~~~~~~l~~Kni~~lraLl~la~~lG~~L~~SW~~IL~tlq~l~~~~~~-p~~~~~~~~ 643 (1653)
. -..+-+..++.++.||+++.|+++++++.+-+.++.+|..++.|...+++.... |..+.+...
T Consensus 621 tw~~~t~~~~~~p~~~~~s~ss~~~v~lT~snvqa~rsf~t~~~~~~~sy~~sw~llm~t~~~ls~~~~m~p~qt~l~v~ 700 (1610)
T KOG1848|consen 621 TWDKATIILNRSPTSKHLSTSSLNRVNLTNSNVQASRSFSTLMDYELVSYKNSWSLLMYTTSSLSQPAYMEPLQTLLAVI 700 (1610)
T ss_pred eccceeeEecCCCCCccccccCCCccccccchHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcchhhcCHHHhhHHHH
Confidence 0 001112356789999999999999999999999999999999999999998765 655554443
Q ss_pred cccccccccc---c-CccchHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHhhHHhhcCCCCCCCCCCCCCCCCcchhH
Q 000329 644 TASSKLARES---S-GQYSDFNVLSSLNSQLFESSALMHISAVKSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSISFSV 719 (1653)
Q Consensus 644 ~~~p~~~~~~---~-~~~~dl~il~~i~~~LFesS~~l~~~al~~fv~ALc~lS~e~l~~~~~~~~~~~~~~~~~~~F~l 719 (1653)
+..+..+.+. + ..++|..+++++.+++|++++.++..++..+++||.+++++.+.....
T Consensus 701 t~~~~hp~~p~~~~~~~ynd~~~lssl~~~v~~~~a~~~~ss~~slL~ali~ls~~sli~~~~----------------- 763 (1610)
T KOG1848|consen 701 TSSSVHPIQPLTAPRQSYNDDLLLSSLKNSVYKTSANRSISSGISLLRALIELSYSSLILETV----------------- 763 (1610)
T ss_pred hcCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhh-----------------
Confidence 3333333221 1 346788889999999999999999999999999999999986544321
Q ss_pred HHHHHHHHHhhhcchhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhcchhhhH
Q 000329 720 ERMISILVNNLHRVEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRS 799 (1653)
Q Consensus 720 ~kL~ev~~~N~~R~~~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 799 (1653)
+..+..|....|..+..|+.....++|+..+..|++.|++.+...+.+..+.....+.....+++..+...+..
T Consensus 764 ------~~~sslr~~~~~l~v~~~~~~l~e~snq~~~~naa~~l~t~~n~vl~s~~~~~asals~da~~dv~sk~ti~~e 837 (1610)
T KOG1848|consen 764 ------CSCSSLRFLDSKLDVSGWSLILKELSNQFKIINAAPELRTRANNVLASILVDVASALSNDASPDVYSKQTIFFE 837 (1610)
T ss_pred ------ccccccccccchhhhhHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhcccccchhccceeeHh
Confidence 12334566777777777777777777777777777777777776666554443223332223333222223333
Q ss_pred HHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCccCCChHHHHHHHhhhhhc---cchhHHHHHHHHHHHHHhcc
Q 000329 800 IECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADA---SEKDLITLGFQSLRFIMNDG 876 (1653)
Q Consensus 800 lq~~ll~pl~~L~~~~~~~dVr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~~~~~---~~~~lv~~aF~~LqlI~~df 876 (1653)
-+.+++..+...+..++..|+|...++|+.+|+|++|+.+-+||..||++|+++++. +++++|+.||++|++|++||
T Consensus 838 s~~~~l~sl~v~~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDf 917 (1610)
T KOG1848|consen 838 SLGMLLPSLEVSDNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDF 917 (1610)
T ss_pred hhHHHHHHHHHHHhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcc
Confidence 344666666666788899999999999999999999999999999999999988763 58899999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHcccCCCchhhHhhhhcccCCCccccCcchhhhhhcc
Q 000329 877 LSSIPTDCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLS 956 (1653)
Q Consensus 877 L~~Lp~~~~~~lV~~L~~F~~q~~dlNISLtAi~~lW~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~ 956 (1653)
|++||.+|+..|||++..|++|+.|+||||||||+||+++||+++++. +.-++.+..+ ..|+..++
T Consensus 918 LqSLp~sci~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~--S~sed~~~~~------------~~e~~~ss 983 (1610)
T KOG1848|consen 918 LQSLPTSCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMF--STSEDSCAYN------------SVEDLYSS 983 (1610)
T ss_pred hhcCChHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhh--ccchhhhhhc------------chhhhccc
Confidence 999999999999999999999999999999999999999999997422 1111111110 01122221
Q ss_pred cccccCCCCCcchhhhhHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHhhhhhhc
Q 000329 957 NLDDQNHSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAA 1036 (1653)
Q Consensus 957 l~~~~~~~~~~~~~~~LW~~LL~~L~~L~~D~R~EVRn~AIqTLfril~~~G~~ls~~~W~~~~~~VLFPLld~l~~~~~ 1036 (1653)
. +.+-..++.+|+.||..|+++|.|+|+||||||+||||||+.+||+.|++.+|+.|+|+|++|||+......
T Consensus 984 ~------~~~~~l~e~lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~- 1056 (1610)
T KOG1848|consen 984 M------KSKEILPEVLWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQN- 1056 (1610)
T ss_pred c------cchhhhhhHHHHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccc-
Confidence 1 112245689999999999999999999999999999999999999999999999999999999999886432
Q ss_pred cCCcccccccccCcCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHcC
Q 000329 1037 TSSKDEWQGKELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILN 1116 (1653)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~~~~~~ihhsr~t~~k~W~ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~LL~~~~~~i~~ 1116 (1653)
.+||+++++ ||||.||.+++++|++|+|..||..|..+++|.+.|+.+|+|+.++...
T Consensus 1057 ---~~ewngkei-------------------qkqwtet~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~ 1114 (1610)
T KOG1848|consen 1057 ---VSEWNGKEI-------------------QKQWTETSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSD 1114 (1610)
T ss_pred ---hhhhcchhH-------------------hhhhhhhhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhc
Confidence 356777663 5999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHhhhcCCCCCChh---hHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHHHH--HHHhhC
Q 000329 1117 GSKEVSLAAINCLQTTVLSHSTKGNLPVA---YLNSVLDVYEYALQKSPNYSDNAAGKVKQEILHGLGELYV--QAQKMF 1191 (1653)
Q Consensus 1117 ~~~els~a~~~~L~~lL~~~~~~~~~~~~---~~~~~~~~w~~~~~~~~~~~~~~~~~~~q~~l~~f~~ly~--~~~~~~ 1191 (1653)
.+.+++.++++|||+++......++++-. ....++..|+.+++.++.+..+...++.||.+++|+..|+ .+++.+
T Consensus 1115 ~s~e~slsai~~~qell~sii~~~~ln~~~~~k~n~vf~~y~~~~~~~ssas~~t~~kv~~eiltgl~~~vqs~sk~d~~ 1194 (1610)
T KOG1848|consen 1115 ISPEISLSAIKALQELLFSIIEFGKLNATFTLKINLVFINYGRFCEVSSSASERTLAKVSQEILTGLIESVQSLSKADNF 1194 (1610)
T ss_pred CChHhHHHHHHHHHHHHHHHhhhccccchHHHHhhhhhhhHhhhcccccccchhHHHHHHHHHHhhhHHHHHHHHhhcch
Confidence 99999999999999999999999988776 5566777888777777666666678899999999998888 455677
Q ss_pred CHHHHHHHHHHHHHHHHcccCCCCCCccccCCCCHHHHHHHHhccccCCCccchhhHHHHHHHHHccCCCCCCCC--CCC
Q 000329 1192 DDRMYGQLLAIIDLAVRQTMITHDNYEIEFGHVPPVLRTILEILPLLSPTEQLCSMWLVLLREILQYLPRSDSPL--QKK 1269 (1653)
Q Consensus 1192 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~d~~~~s~lQ~~vl~~l~~i~~~~~~~~~~~~~~~~l~~f~~~~~~~~--~~~ 1269 (1653)
..+.++..+..++.++.||.++. +..|... ||+|.+|++.++.+-+++ ...+|..++.....+.+.+|.-. ++.
T Consensus 1195 ~~e~~~~slll~~kai~yp~~~~--ft~d~hv-psvq~avls~ld~l~~~~-~~~~~lvLl~~sthltpafdt~l~~~k~ 1270 (1610)
T KOG1848|consen 1195 GIEEIKDSLLLVRKAIFYPESTS--FTLDVHV-PSVQLAVLSLLDLLISDK-FKLNHLVLLLWSTHLTPAFDTRLKITKK 1270 (1610)
T ss_pred hHHHHHHHHHHhhhccccCCCch--hhhhccC-ChHHHHHHhhcchhccCc-cccchhHHHHHhhhhhhhhhhhhhhhhc
Confidence 78899999999999999998776 8888766 889999999999998843 45666677777677776665322 111
Q ss_pred CCCCCCCCCCCcccccccccccCCCCCCCCCCcchhhhhhhccCCcccccchHHHHHhHhHHHHHHhhhcchhhhhchhH
Q 000329 1270 EDEEEPPSTSDNIHDVHVRTKYDKPNGTAPTTPKDASALSESSGSVTAAIPNHLFAEKLIPVVVDLFLKAPAVEKCIIFP 1349 (1653)
Q Consensus 1270 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~ 1349 (1653)
. +++. +..-.++-|...+ + ..-...+.-++++.++-....+++++.+.++--++
T Consensus 1271 ~-~~g~------------~~~e~~~das~et----l---------~~~s~~t~rna~nkv~~~g~~~l~a~a~~~i~~f~ 1324 (1610)
T KOG1848|consen 1271 L-GPGL------------PKEEKTIDASLET----L---------ICLSKKTFRNAENKVENHGLDFLNAGAMQHIFEFL 1324 (1610)
T ss_pred c-CCCC------------chhhhcccchhhh----h---------HHhhHHHhhhchhhhchhhHHHHhhhHHHHHHhhH
Confidence 0 0000 0000000000000 0 00011233388888888877788888887777666
Q ss_pred HHHHhhccccccc-CCCCCCcchHHHHHHHHHHHHHhhHhHhhh-----hcccccCChHHHHHhHHHHHHHhhhhhcccC
Q 000329 1350 EIIQNLGRCMTTR-RDNPDSSLWRLAVEGFNHILVDDVTKLAAN-----FWQDMKISRPARLRVWKEVADVYEIFLVGYC 1423 (1653)
Q Consensus 1350 ~i~~~l~~~~~~k-~~~~~~~~Wk~a~~~~~~il~~~l~~~~~~-----~~~~~~~~~~~~~~~W~~v~~~~~~~l~~~~ 1423 (1653)
+...-+.+++-+. +++|+.|+|++|..+|++..-.+....... ....+.+...+...+|++..|++++++.++|
T Consensus 1325 ev~~rlkr~~~t~~r~npe~piwvlas~cF~~l~~~~fk~l~~~~~~~laet~l~lflt~~it~~rinpevd~~~~~~~c 1404 (1610)
T KOG1848|consen 1325 EVPMRLKRRCPTASRVNPELPIWVLASKCFVRLMINCFKDLKGSDAIELAETMLCLFLTVEITNSRINPEVDYEYVWSLC 1404 (1610)
T ss_pred HHHHHHHHHcccccccCCCCceeeeeHhhHHhhHHHHHHHhccccccchhhhhhheeeEEEeeeeeeCcchhhhhhhhhc
Confidence 6666666554444 888999999999999999887775543322 0000112234556789999999999999998
Q ss_pred C-C--CCCCCCCChhhccccchhhchHHHHHhhhhccCCCCCCChHhhhhhHhhhhhcccCCCCCCccccccCccchhh-
Q 000329 1424 G-R--ALPSNSLSAVALSGADESLEMSILDILGDKILKSPIDAPFDVLQRLISTIDRCASRTCSLPVETVELMPAHCSK- 1499 (1653)
Q Consensus 1424 ~-~--~~~~~~~~~~~~~~~dE~~d~~~~~~l~~~i~~~~~~~p~~~~~~l~~l~~~~~~r~~~~~~~t~~~~~~~r~r- 1499 (1653)
+ + +..+..+++.... .+|.+++++++.+++.++.+..|.|.+.++|+++++++++.| ++.++.+.+..|+|..|
T Consensus 1405 d~e~~~~ksl~l~a~~~l-~ne~led~~i~~~~d~~l~~~~d~prn~l~rlistl~r~sqk-~ss~~fs~~~~~~hn~Rf 1482 (1610)
T KOG1848|consen 1405 DFENSSLKSLHLLAKPHL-QNECLEDEVIQYYIDLCLGSFYDQPRNTLDRLISTLNRDSQK-ASSNFFSSTESPVHNRRF 1482 (1610)
T ss_pred ccccchhhhhhhccchhh-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHh-hhccCccccccCccChhH
Confidence 8 3 2344556667888 999999999999999999999999999999999999999988 77777777777777666
Q ss_pred -hHHHHHHHHhhhhcCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCChhHHHHHHHHHHHHhhcc
Q 000329 1500 -FSLACLHKLFSLSSSDNEASKWNLTRAEVSKISITVLMGRCEYILNRFLIDENDLGERNFPAARLEEIIFILQELARLK 1578 (1653)
Q Consensus 1500 -~a~~c~d~Lf~l~s~~~~~~~~~~~~~~~a~~~~p~Ll~Rc~~~L~~yi~D~~l~G~~P~P~~r~~El~~vL~~l~~L~ 1578 (1653)
.+|.||+.||+.... ..+..|..+++++.|+|..||..+|++|++||...|..|+|+.|..||+++|++|..|.
T Consensus 1483 ~la~~Cf~~ll~ds~s-----~~~ntr~~vsk~~~p~L~aRc~~~Lsry~~Des~~G~lplpksr~~Eiit~lq~l~~l~ 1557 (1610)
T KOG1848|consen 1483 RLAVDCFSILLDDSNS-----SYENTREKVSKTIRPILQARCCWSLSRYVADESVSGYLPLPKSREMEIITVLQCLNNLP 1557 (1610)
T ss_pred HHHHHHHHHHHHhcch-----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchHHHHHHHHHHHHHHHHh
Confidence 566699999987753 12348999999999999999999999999999999999999999999999999999998
Q ss_pred cCcccccCCCCCcccccccccCcCCCcccchhhhhhhhhhheecchhHHHHHHHHH--HHHHhh
Q 000329 1579 IHPDTASALPLHPVLKSGLAMDENSDKRPHLLVLFPSFCELVISREARVRELVQVL--LRLITK 1640 (1653)
Q Consensus 1579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hL~~lyp~l~~~~~~~~~~v~~ll~~~--l~~vg~ 1640 (1653)
... +.+|.+ . +..++.||..|+|.+|+.++++.+++....|.+ .+.+..
T Consensus 1558 ~~L------~~np~l------~-n~~~~~hl~~lsPs~~~~~p~~h~~~~l~~qvL~~i~~~~t 1608 (1610)
T KOG1848|consen 1558 SLL------YSNPIL------Y-NLRKAYHLTNLSPSATSLNPAIHGQLTLKNQVLNAILGFTT 1608 (1610)
T ss_pred hcc------ccCchh------h-hHHHHHHHHhccHHHHhhhhhhhcccHHHHHHHHHHHhhhc
Confidence 883 122221 1 267899999999999999987777766555543 444433
No 2
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=100.00 E-value=8.8e-142 Score=1427.26 Aligned_cols=1063 Identities=21% Similarity=0.330 Sum_probs=823.9
Q ss_pred HHHHHHHHHHHHHH-HhhcChhHHHHHHHHHHHHhCCCCCC--------------c--------------ccCchhHHHH
Q 000329 4 MAVLESDLRALSAE-ARRRYPAVKDGAEHAILKLRSLSSPS--------------E--------------LAQSEDILRI 54 (1653)
Q Consensus 4 ~~~L~~dL~~L~~E-skRK~~~lk~A~e~al~~Lk~~~~~~--------------~--------------~~~~~~~l~P 54 (1653)
-.++.+-|..+++. ..|||+++|+||+++++.||...... . ..+++.++.|
T Consensus 11 ~~~~~~ale~i~~~k~~rk~~~l~~a~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~p 90 (1780)
T PLN03076 11 GKVVSPALEKIIKNASWRKHSKLAHECKAVIERLNSPEKNPPSTSSAAADSASASSLPGPLHDGGSIEYSLAESELILSP 90 (1780)
T ss_pred hHHHHHHHHHHHhhHHhhccHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccCHHHHHHH
Confidence 35788888888833 24789999999999999999765320 0 1256779999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHhcCCCCc----------chHHHHHHHHHcccCCCCchHHHHHHHHHHHHHcCCCCC
Q 000329 55 FLMACEVRTVKLSVIGLSCIQKLISHDAVAP----------SALKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLHP 124 (1653)
Q Consensus 55 fllaC~skn~kl~~iaL~~lqkLi~~~~i~~----------~~l~~Il~~l~~~~~~~~e~vqLKILQ~L~~l~~s~~~~ 124 (1653)
|.+||+||++||+.+||+||||||+|++|.. ..++.+++++|+|.+.+||.|||||||+|++++++|.+.
T Consensus 91 l~lac~s~~~ki~~~ALdcl~KLis~~~i~~~~~~~~~~~~~lid~~i~~Ic~c~~~~de~iqLqilk~Ll~~v~s~~~~ 170 (1780)
T PLN03076 91 LINACGTGSAKIVDPALDCIQKLIAHGYLRGEADPSGGPEALLLAKLIESVCKCHDLGDEGIELLVLKTLLSAVTSTSLR 170 (1780)
T ss_pred HHHHHcCCCccHHHHHHHHHHHHHHHhhcCCCCCCCCCccccHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHcCCCce
Confidence 9999999999999999999999999999921 458999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhhcccCChHHHHHHHHHHHHHHHHHHHHhhhhhcc-CCCCCc----------CCCCCcccccccc
Q 000329 125 ENEDNMAQALGICLRLLENNRSSDSVRNTAAATFRQAVALIFDHVVRAES-LPMGKF----------GSGAHITRTNSVT 193 (1653)
Q Consensus 125 ~~g~~L~~~L~~C~~L~~~sk~~~vv~~TA~ATL~Qlv~~VF~rv~~ed~-~~~~~~----------~~~~~~~~~~~~~ 193 (1653)
+||+.|.+++++||++|..||++ ++++||+|||+|||..||+||+.... .+..+. .+....+....++
T Consensus 171 vhg~~LLkaVR~cyni~l~Sks~-~nq~tA~atLtQmv~~VF~R~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1780)
T PLN03076 171 IHGDCLLQAVRTCYDIYLGSKNV-VNQTTAKASLIQMLVIVFRRMEADSSTVPIQPIVVAELMEPAEKSDSDTSMTQFVQ 249 (1780)
T ss_pred eEHHHHHHHHHHhheeeecCCcH-HHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccccchhhhhh
Confidence 99999999999999999999999 99999999999999999999964211 000000 0000000000000
Q ss_pred cccc----------------------ccc-----------CCC---------Ccccc---------cccCCCCcc-----
Q 000329 194 GDVS----------------------RSI-----------NHS---------ESLEH---------EFASEGPSL----- 217 (1653)
Q Consensus 194 ~~~~----------------------~~~-----------~~~---------~~~~~---------~~~~~~~~~----- 217 (1653)
+..+ ... +.+ +.... ....+...+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (1780)
T PLN03076 250 GFITKIMQDIDGVLNPATAGKSSGSGAHDGAFETTATVETTNPADLLDSTDKDMLDAKYWEISMYKSALEGRKGELADGE 329 (1780)
T ss_pred hhhhhhccccccccCcccccccccccccccccccccccCCCCcchhhccccccccccccccccccccccccccccccccc
Confidence 0000 000 000 00000 000000000
Q ss_pred --h--hhh---hhhhhHHHHHHHHHHHHhhcCCCCCcc--cccch-hHHHHHHHHHHHHHhCchhhccCHHHHHHHHHHH
Q 000329 218 --R--RET---LTKAGKLGLRLLEDLTALAAGGSASWL--HVNTL-QRTFVLDILEFILSNHVSLFRMLVSYEQVLRHQI 287 (1653)
Q Consensus 218 --~--~~~---~~~~~~da~~vf~dLc~L~~~e~p~~l--~~~~l-~k~~~LELlesvL~n~~~~F~~hpel~~llr~~l 287 (1653)
. ... .....+|||+||+.||+|+.++.|..- +...+ +|.++||||.++|+|+|++|.+||.|.+++|++|
T Consensus 330 ~~~~~~~~~~~~~~~~kDAflvFr~lCkLs~K~~~~~~~~d~~~~rsKllsL~Li~~ile~~g~~f~~~~~fi~~ik~~L 409 (1780)
T PLN03076 330 VEKDDDLEVQIGNKLRRDAFLVFRALCKLSMKTPPKEALADPQLMRGKILALELLKILLENAGAVFRTSDRFLGAIKQYL 409 (1780)
T ss_pred ccccchhhhhhhhhhhhhHHHHHHHHHHHhCCCCCCCccccHHHHHHHHHHHHHHHHHHhcccHhhhcCHHHHHHHHHHH
Confidence 0 000 022579999999999999988766331 22344 8999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccCCCCCCCchHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHH-HHhcCCC-C-CHHHHHHHHHHHHHHh
Q 000329 288 CSLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSML-VKVTFLD-L-PLWHRILVLEILRGFC 364 (1653)
Q Consensus 288 c~lLi~~ls~n~~~~~~~~~~~F~~~~lRi~~~Li~~~~~~L~~E~EvfLs~L-i~~l~~~-~-~~w~r~L~LEvl~~l~ 364 (1653)
|..|+++..++ ..+.|. +++|||++|+.+||.+||.|+|+|++.+ +++++.. . +..||+++||+|.+||
T Consensus 410 c~sL~~n~~S~-------~~~vf~-lsl~If~~L~~~~R~~LK~eievF~~~I~l~ile~~~~~s~~qK~~~L~~L~~lc 481 (1780)
T PLN03076 410 CLSLLKNSASS-------LMIIFQ-LSCSIFISLVSRFRAGLKAEIGVFFPMIVLRVLENVAQPNFQQKMIVLRFLDKLC 481 (1780)
T ss_pred HHHHHHHhcCC-------CHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Confidence 96666654331 356774 8999999999999999999999999976 5677753 3 4799999999999999
Q ss_pred cChHHHHHHHHhcCCCCCCcchHHHHHHHHHHHhccccc---------c------------------------------C
Q 000329 365 VEARTLRLLFQNFDMNPKNTNVVEGMVKALARVVSSVQF---------Q------------------------------E 405 (1653)
Q Consensus 365 ~dp~ll~~iy~nYD~~~~~~nI~~~li~~L~~~~~~~~~---------~------------------------------~ 405 (1653)
+||+++++||.|||||.++.||||++++.|+|++++.+. + +
T Consensus 482 ~dp~~lveiyvNYDCD~~~~NifE~lv~~Lsk~a~~~~~~~~~~~~~~qe~~lk~~aLecLv~il~sl~~w~~~~~~~~~ 561 (1780)
T PLN03076 482 VDSQILVDIFINYDCDVNSSNIFERMVNGLLKTAQGVPPGVETTLLPPQEAAMKLEAMKCLVAILRSMGDWMNKQLRLPD 561 (1780)
T ss_pred hCccHHHHHHhccCCCCCCchHHHHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 999999999999999999999999999999999974210 0 0
Q ss_pred C--------------------------------------c-----HHH----------HHHhhhcccCccc-cccccccc
Q 000329 406 T--------------------------------------S-----EES----------LSAVAGMFSSKAK-GIEWILDN 431 (1653)
Q Consensus 406 ~--------------------------------------s-----~e~----------l~~~~~~f~~k~k-Gi~~ll~~ 431 (1653)
. + .+. ++.++..||.||| ||+|+..+
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~K~~l~~g~~~FN~~Pk~Gi~~L~~~ 641 (1780)
T PLN03076 562 PASLKKLDAVENNLEPGSLPVANGNGDENGEGSDSHSELSSETSDAATIEQRRAYKLELQEGISLFNRKPKKGIEFLINA 641 (1780)
T ss_pred ccccccchhhccccccccccccccccccccccccccccccccCCcHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHc
Confidence 0 0 000 1246789999998 99876422
Q ss_pred -----Cc------------------------------------------CCCcc-----------cCcchhhhHHHHHHH
Q 000329 432 -----DA------------------------------------------SNAAV-----------LVASEAHSITLAIEG 453 (1653)
Q Consensus 432 -----d~------------------------------------------~~~~~-----------ll~~Ea~~I~~~~e~ 453 (1653)
+| .+.++ .+|||+|+|+|+||.
T Consensus 642 ~~i~~~p~~iA~FL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~yv~~fdF~g~~~d~ALR~fL~~FrLPGEaQ~IdRime~ 721 (1780)
T PLN03076 642 NKVGESPEEIAAFLKDASGLNKTLIGDYLGEREDLSLKVMHAYVDSFDFQGMEFDEAIRAFLQGFRLPGEAQKIDRIMEK 721 (1780)
T ss_pred CCCCCCHHHHHHHHHhCCCCCHHHHHHHHcCCChHHHHHHHHHHHhCCcCCCCHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 11 01111 189999999999999
Q ss_pred HHH------------------HHHHHHhhccc--------------------ccccccccCC----CcCCCCCCC-----
Q 000329 454 LLG------------------VVFTVATLTDE--------------------AVDVGEVLES----PRCDYDPLP----- 486 (1653)
Q Consensus 454 ~a~------------------~i~sv~~L~~~--------------------~~~~g~d~~~----~~~~~~~~~----- 486 (1653)
|++ ++|+++||||| |+|+|+|++. .+|+++...
T Consensus 722 Fa~rY~~~Np~~f~~~D~~yvLaysiIMLnTDlHnp~vk~kMt~~~Fi~n~rgin~g~dlp~e~L~~iY~~I~~~ei~~~ 801 (1780)
T PLN03076 722 FAERYCKCNPKAFSSADTAYVLAYSVIMLNTDAHNPMVKNKMSADDFIRNNRGIDDGKDLPEEFMRSLYERISKNEIKMK 801 (1780)
T ss_pred HHHHHHHhCCCcCCCHHHHHHHHHHHHHHhHHhcCCccCCCCCHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHhCcccCc
Confidence 997 56899999988 5677765433 334321000
Q ss_pred ----------Ccc---------------------------------------------------CchhHHHHHHHHHhhH
Q 000329 487 ----------KCM---------------------------------------------------GETAVLCISMVDSLWL 505 (1653)
Q Consensus 487 ----------~~~---------------------------------------------------~~~~~~~~~m~~~~W~ 505 (1653)
... ..+..++++||+.+|+
T Consensus 802 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~e~~~~~s~~l~~~~~~~~k~~~~~~~~~f~~a~~~~~~~~mfe~~W~ 881 (1780)
T PLN03076 802 EDDLVPQQKQSANSNRILGLDSILNIVIRKRGEDSYMETSDDLIKHMQEQFKEKARKSESVYYAATDVVILRFMVEVCWA 881 (1780)
T ss_pred ccccccccccccccchhhhhHHHHhHhhHHHHHHHHHHhHHHHHHHHHHHHHHhhccccCceeecchHHHHHHHHHHHHH
Confidence 000 0123467999999999
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCCCCCcccccccccCCCCCccccccc
Q 000329 506 TILDALSLILSRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNESDRRSAVLQSPGSKRSESLVD 585 (1653)
Q Consensus 506 ~iLaalS~~l~~s~De~~~~~lL~gfq~~a~iag~l~L~~~rDafl~sL~k~t~~~~~~~~~~~~~~~~p~s~~~~~~~~ 585 (1653)
|++||+|..|+.++|+++++.||+||+.++|+||.|||+++||+|+++|||||.+.. |
T Consensus 882 p~laalS~~~~~s~d~~~~~~cL~G~~~~i~ia~~f~l~~~rdafv~~L~kfT~L~~------------~---------- 939 (1780)
T PLN03076 882 PMLAAFSVPLDQSDDEVVTFQCLEGFRHAIHVTAVMSMKTHRDAFVTSLAKFTSLHS------------P---------- 939 (1780)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHcCCCC------------h----------
Confidence 999999999999999999999999999999999999999999999999999998741 1
Q ss_pred ccCCccCChHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHhcCCCCCC-----------------ccccccccc
Q 000329 586 QKDNIVLTPKNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHSPHATT-----------------QEVSTASSK 648 (1653)
Q Consensus 586 ~~~~~~l~~Kni~~lraLl~la~~lG~~L~~SW~~IL~tlq~l~~~~~~p~~~~-----------------~~~~~~~p~ 648 (1653)
..++.||++|+|+||+||+.+||+|++||++||+|++++|++...+.... +.++...|.
T Consensus 940 ----~emk~Knv~Aik~ll~ia~~~Gn~L~~sW~~IL~cISqLerl~Li~~gv~~d~~~~~~~~~~~~~~~~~~~~~~p~ 1015 (1780)
T PLN03076 940 ----ADIKQKNIDAIKAIVSIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFAAPQNESDKSKQAKSPILPV 1015 (1780)
T ss_pred ----hhhhHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHhhcCCCcchhhhcccccccccccccccccccc
Confidence 12789999999999999999999999999999999999999875332210 000001111
Q ss_pred ccccc-------------------------cCc--cch-------HhHHH----HHHHHHHhhccCCChHHHHHHHHHHH
Q 000329 649 LARES-------------------------SGQ--YSD-------FNVLS----SLNSQLFESSALMHISAVKSLLSALH 690 (1653)
Q Consensus 649 ~~~~~-------------------------~~~--~~d-------l~il~----~i~~~LFesS~~l~~~al~~fv~ALc 690 (1653)
..+.. .+. .++ +.++. ..++++|++|++|+++||++|++|||
T Consensus 1016 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~idkIF~~S~~L~~eai~~fv~AL~ 1095 (1780)
T PLN03076 1016 LKRKGPGKLQYAAAAVRRGSYDSAGVGGKASGVVTSEQMNNLVSNLNMLEQVGSFEMNRIFTRSQKLNSEAIIDFVKALC 1095 (1780)
T ss_pred cccccccccchhhhhhcccccccccccccccccCCHHHHHHHHhhhhhhhhhhhhHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 10000 000 011 11221 13489999999999999999999999
Q ss_pred HhhHHhhcCCCCCCCCCCCCCCCCcchhHHHHHHHHHHhhhc----chhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q 000329 691 QLSHQCMIGTSSSFGPTSSQKIGSISFSVERMISILVNNLHR----VEPLWDQVVGHFLELADNSNQHLRNIALDALDQS 766 (1653)
Q Consensus 691 ~lS~e~l~~~~~~~~~~~~~~~~~~~F~l~kL~ev~~~N~~R----~~~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~l 766 (1653)
++|.+++..+. .|++|+|+||+||+++||+| |..+|+.+++||+.++||+|..++.||+|+|+|+
T Consensus 1096 ~vS~eEl~~~~-----------~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQL 1164 (1780)
T PLN03076 1096 KVSMEELRSPS-----------DPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQL 1164 (1780)
T ss_pred HhhHHHHccCC-----------CCchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Confidence 99999987642 47899999999999999999 8999999999999999999999999999999999
Q ss_pred HHHHhccccccccccccCCCChhhhhcchhhhHHHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCccCCChHHH
Q 000329 767 ICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSI 846 (1653)
Q Consensus 767 i~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~dVr~~iL~~L~~iL~~~g~~L~sgW~~I 846 (1653)
++++++.++ ..++.||+.||+||+.+|..+.+.+||++|++|+.+|++.++++|++||++|
T Consensus 1165 s~kfle~eE-------------------L~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktI 1225 (1780)
T PLN03076 1165 SMKFLEREE-------------------LANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSM 1225 (1780)
T ss_pred HHHhcchhh-------------------hhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHH
Confidence 999997532 3467899999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhccchhHHHHHHHHHHHHHhccCCCCC---hhhHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHccc
Q 000329 847 LELLRSVADASEKDLITLGFQSLRFIMNDGLSSIP---TDCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAKGL 923 (1653)
Q Consensus 847 f~IL~~~~~~~~~~lv~~aF~~LqlI~~dfL~~Lp---~~~~~~lV~~L~~F~~q~~dlNISLtAi~~lW~isD~L~~~~ 923 (1653)
|++|++++.++++.+|+.||+++++|++||++.+| .+||.+||+||.+|++|+.++||||+|+++||.|++++.+..
T Consensus 1226 F~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~ 1305 (1780)
T PLN03076 1226 FMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGD 1305 (1780)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999777 699999999999999999999999999999999999998642
Q ss_pred CCCchhhHhhhhcccCCCccccCcchhhhhhcccccccCCCCCcchhhhhHHHHHHHHHHhccCCcHHHHHHHHHHHHHH
Q 000329 924 VHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQT 1003 (1653)
Q Consensus 924 ~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~LW~~LL~~L~~L~~D~R~EVRn~AIqTLfri 1003 (1653)
... . .+........+... ......+ .. .......++..+|+|||.+|.+++.|+|+|||++||+|||+|
T Consensus 1306 ~~~-~-~~~~~~~~~~~~s~-~~~~~~~-~~-------~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~i 1374 (1780)
T PLN03076 1306 LGS-S-SRNKDKEAPPSSPQ-SGKDGKQ-ES-------GEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDT 1374 (1780)
T ss_pred ccc-c-cccccccccccccc-ccccccc-cc-------cccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 110 0 00000000000000 0000000 00 000112334589999999999999999999999999999999
Q ss_pred HHhccCCCCHHHHHHHHHHhHHHHHHhhhhhhccCCcccccccccCcCCCccchhhcccccchhhhhHH-HHHHHHHHHH
Q 000329 1004 LGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNTAQKQWD-ETLVLVLGGI 1082 (1653)
Q Consensus 1004 l~~~G~~ls~~~W~~~~~~VLFPLld~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ihhsr~t~~k~W~-ET~vlaL~gl 1082 (1653)
|.+||+.|++++|+.|||+||||||+.++........++|++.+++. .| .+.+.++|. ||+++||+|+
T Consensus 1375 L~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~----------~~-~~~e~~~Wl~eT~~~AL~~l 1443 (1780)
T PLN03076 1375 LRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDG----------DQ-GELDQDAWLYETCTLALQLV 1443 (1780)
T ss_pred HHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccc----------cc-cchhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999998543332222222222211 11 135679996 9999999999
Q ss_pred HHHHHhhhhhhcccCchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHhhcCC
Q 000329 1083 ARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKGNLPVAYLNSVLDVYEYALQKS 1161 (1653)
Q Consensus 1083 ~~lf~~~~~~L~~~~~F~~~W~~LL~~~~~~i~~~~~els~a~~~~L~~lL~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 1161 (1653)
++||.+||+.|.. ....+|+.+..|+++++..++..+.+||++++..++.+++ ++.|+.+.+.+.+++..+
T Consensus 1444 vdLft~fFd~L~~------~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~--~~~W~~i~~~~~~lf~~T 1514 (1780)
T PLN03076 1444 VDLFVKFYPTVNP------LLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFS--DEKWLEVVLSLKEAANAT 1514 (1780)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCC--HHHHHHHHHHHHHHHHHh
Confidence 9999999998753 5667999999999999999999999999999999998875 999999999999887643
No 3
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-103 Score=1011.54 Aligned_cols=999 Identities=22% Similarity=0.336 Sum_probs=795.3
Q ss_pred HHHHhhcChhHHHHHHHHHHHHhCCCCCCcccCchhHHHHHHHHhcCCCchhHHHHHHHHHHHHhcCCCCcc--------
Q 000329 15 SAEARRRYPAVKDGAEHAILKLRSLSSPSELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAPS-------- 86 (1653)
Q Consensus 15 ~~EskRK~~~lk~A~e~al~~Lk~~~~~~~~~~~~~~l~PfllaC~skn~kl~~iaL~~lqkLi~~~~i~~~-------- 86 (1653)
..-.+|+|+.++.+|+.+++++|+.. -...+.+.++.||.+||+||++||+..|++|+||||+|+.+...
T Consensus 12 ~~~~~~~~s~l~~~~~~~~~~~~~~~--~~~~~~e~~~~p~~la~~t~~~ki~~~~~dc~~kli~~~~l~g~~~~~~~~~ 89 (1514)
T KOG0929|consen 12 ADAEWRKHSKLKKACKSALEELKANG--LSLAEAELYLLPFELACDTKSPKIVSPALDCLQKLIAYGHLTGESNDSGGPE 89 (1514)
T ss_pred hhhhhhhHHHHHHHHHHHHHhhhccc--CCCcchhhhhChHHhhcCCCCcchhccHHHHHHHHHHhhhccCCCCCCCCcc
Confidence 33446799999999999999999932 34678899999999999999999999999999999999988642
Q ss_pred --hHHHHHHHHHcccCCCCchHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHhhhcccCChHHHHHHHHHHHHHHHHH
Q 000329 87 --ALKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQALGICLRLLENNRSSDSVRNTAAATFRQAVAL 164 (1653)
Q Consensus 87 --~l~~Il~~l~~~~~~~~e~vqLKILQ~L~~l~~s~~~~~~g~~L~~~L~~C~~L~~~sk~~~vv~~TA~ATL~Qlv~~ 164 (1653)
.+..+++++|.|.+..+|.+||+++++|++.+++..+.+||+.|..+++.||++|.+| + ++++||.|||.||+..
T Consensus 90 ~~l~~~~~~~vc~~~~~~~e~~elq~~k~lL~av~s~~~~i~~~~ll~~vr~c~~iyl~s--~-~nq~~ak~~L~qml~~ 166 (1514)
T KOG0929|consen 90 DLLIDKIIEAVCKCFDGLDESVELQVLKALLAAVTSQHIEIHGDSLLLIVRTCYNIYLGS--P-INQTTAKATLTQMLNI 166 (1514)
T ss_pred hhHHHHHHhHhhhccCCCchhhhHhHHHHHHHHHhccceeecCcchHHHHHHHHHHHhcC--c-ccchHHHHHHHHHHHH
Confidence 3799999999998877999999999999999999888899999999999999999987 6 8999999999999999
Q ss_pred HHHhhhhhccCCCCCcC--------CCCCccc------------ccccccccc----------cccCCCCccccc---cc
Q 000329 165 IFDHVVRAESLPMGKFG--------SGAHITR------------TNSVTGDVS----------RSINHSESLEHE---FA 211 (1653)
Q Consensus 165 VF~rv~~ed~~~~~~~~--------~~~~~~~------------~~~~~~~~~----------~~~~~~~~~~~~---~~ 211 (1653)
||.|+..+ ..+..+.. .+....+ ......++. ++....+..++. ..
T Consensus 167 vf~~~e~~-~~~~~~i~vs~~~~~~~~~~s~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (1514)
T KOG0929|consen 167 VFRRMEED-SSDESQILVSELLRVSDDPSSTEFVQQFIDSIMEVLVASPEDVGLTEMLDDNVNENSKTGDSLSLRDAESP 245 (1514)
T ss_pred HHHHhhhc-cCcccccccccccccCCCcchhHHHHHHHHHHHHhccCCccccccccccccccccccccCcccccCccccc
Confidence 99999853 11100000 0000000 000000000 000000000000 00
Q ss_pred CC-C--Ccc-hhhhhhhhhHHHHHHHHHHHHhhcCCCCCc---ccccch-hHHHHHHHHHHHHHhCchhhccCHHHHHHH
Q 000329 212 SE-G--PSL-RRETLTKAGKLGLRLLEDLTALAAGGSASW---LHVNTL-QRTFVLDILEFILSNHVSLFRMLVSYEQVL 283 (1653)
Q Consensus 212 ~~-~--~~~-~~~~~~~~~~da~~vf~dLc~L~~~e~p~~---l~~~~l-~k~~~LELlesvL~n~~~~F~~hpel~~ll 283 (1653)
.+ . +.. .+..-....+||++||+.||+|+.+..+.- .+.+ + +|+++|||+.++|+|++++|.++..|...+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~Daflvfr~Lckls~k~~s~~~~d~~s~-~R~k~lsl~ll~~il~~~~~vf~s~~~fi~ai 324 (1514)
T KOG0929|consen 246 ESESERDDDSERSSQNKLQRDAFLVFRALCKLSMKPLSSEESDTQSH-MRSKLLSLELLKSILENSGSVFRSNEHFIDAI 324 (1514)
T ss_pred ccccccCcchhhccccHHHHhHHHHHHHHHHhhCCCCCCCCCChHHH-HhhhHHHHHHHHHHHhccchhhcCchhhHHHH
Confidence 00 0 000 011224567999999999999998876632 2222 4 899999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHhc-C-CCCCHHHHHHHHHHHH
Q 000329 284 RHQICSLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVKVT-F-LDLPLWHRILVLEILR 361 (1653)
Q Consensus 284 r~~lc~lLi~~ls~n~~~~~~~~~~~F~~~~lRi~~~Li~~~~~~L~~E~EvfLs~Li~~l-~-~~~~~w~r~L~LEvl~ 361 (1653)
|+++|-.|.| |+.++. .+.| ++.+-||+.|+..|+.++|.|+|+|++.++..+ + ...+.-||..+|.++.
T Consensus 325 kqyKOGalsk----n~vS~~---~~vf-e~s~~If~~lls~~r~~~K~ei~vff~~i~~~ile~~t~s~~qk~~~l~~~~ 396 (1514)
T KOG0929|consen 325 KQYLCLALSK----NSVSNV---PMVF-ELSCTIFVSLLSNFRTHLKAEIEVFFSEIFLRILENNTSSFQQKMMVLRILT 396 (1514)
T ss_pred HHHHHHHHhh----cccccc---hHHH-HHHHHHHHHHHHhcccccccccccchhhhhhhhhhcCCCcccchhHHHHHHh
Confidence 9999965543 322222 5677 589999999999999999999999999887654 4 2347789999999999
Q ss_pred HHhcChHHHHHHHHhcCCCCCCcchHHHHHHHHHHHhccc--------ccc-----------------------C-----
Q 000329 362 GFCVEARTLRLLFQNFDMNPKNTNVVEGMVKALARVVSSV--------QFQ-----------------------E----- 405 (1653)
Q Consensus 362 ~l~~dp~ll~~iy~nYD~~~~~~nI~~~li~~L~~~~~~~--------~~~-----------------------~----- 405 (1653)
++|.||+.++++|.||||+.+..|||+++++.+.+.+++. |.+ +
T Consensus 397 ~ic~d~q~~Vdi~vnydcd~~~~nifer~v~~ltk~a~g~~~s~~~~~P~~~~~~~~~s~kcL~s~l~s~s~w~~~~~~~ 476 (1514)
T KOG0929|consen 397 RICADPQTLVDIYVNYDCDSNSQNIFERLVNGLSKIAQGRTGSNLELSPVQELALRLKSLKCLVSILKSMSGWNDNQLNV 476 (1514)
T ss_pred hhcCCCccccccccCCccccCCccHHHHHHhhHHHhhcCCCccccCCCCchhhhHhhhhhhhHHHHHHhhhhhccccccC
Confidence 9999999999999999999999999999999999999751 110 0
Q ss_pred ------------------Cc---------HH---------HHHHhhhcccCccc-cccccccc-----------------
Q 000329 406 ------------------TS---------EE---------SLSAVAGMFSSKAK-GIEWILDN----------------- 431 (1653)
Q Consensus 406 ------------------~s---------~e---------~l~~~~~~f~~k~k-Gi~~ll~~----------------- 431 (1653)
.+ .+ .++.+...||.||+ ||+++..+
T Consensus 477 ~~~~t~~~~~~~~~~~~~~s~~~~~~~~~~~q~e~~k~ek~l~~~i~~fN~kpkkgi~~l~s~~~v~~sp~eiaeFL~~t 556 (1514)
T KOG0929|consen 477 EGVITGKKSSTTPIENELNSDTQSNDADDPEQFEALKSEKQLQEGIQLFNGKPKKGISFLDSKGTVGTSPLEIAEFLIGT 556 (1514)
T ss_pred CCcccCccccCcchhhhccCccccccccChhhhhhhhhhcchHHHHHHhccCCccCchhhhhcCCCCCCHHHHHHHHHhc
Confidence 00 00 01345678999987 99765321
Q ss_pred ---------------CcC---------------CCcc-----------cCcchhhhHHHHHHHHHH--------------
Q 000329 432 ---------------DAS---------------NAAV-----------LVASEAHSITLAIEGLLG-------------- 456 (1653)
Q Consensus 432 ---------------d~~---------------~~~~-----------ll~~Ea~~I~~~~e~~a~-------------- 456 (1653)
|+. ++++ .+|||+|+|+|+||+|++
T Consensus 557 ~~l~kt~igdyLGe~d~~~~~VMhayVd~~dF~~~~~~~ALR~fL~~frLPgEaQkIDRiM~kFS~ry~~cNP~~lFssA 636 (1514)
T KOG0929|consen 557 EGLSKTILGDYLGEDDDFNKAVMHAYVDLFDFKNMSLVEALRKFLEGFRLPGEAQKIDRLMEKFSERYCKCNPGTLFSSA 636 (1514)
T ss_pred cCCCHHHHHHHhcCCcchhHHHHHHHHHhhCcCCCcHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHhcCCCccCCCc
Confidence 111 2221 189999999999999996
Q ss_pred -----HHHHHHhhccc--------------------ccccccccCCC----cCCCCCC--------------CCc-----
Q 000329 457 -----VVFTVATLTDE--------------------AVDVGEVLESP----RCDYDPL--------------PKC----- 488 (1653)
Q Consensus 457 -----~i~sv~~L~~~--------------------~~~~g~d~~~~----~~~~~~~--------------~~~----- 488 (1653)
++||++||||| |+|+|+|++.. .||++.. .++
T Consensus 637 DtaYVLAfSlIMLnTDlHnp~vKnKMTK~dFI~nnrgind~~dlp~e~L~~lYd~I~~~Eikm~~~~~~~~~~~~s~~~~ 716 (1514)
T KOG0929|consen 637 DTAYVLAFSLIMLNTDLHNPNVKNKMTKADFIRNNRGINDGKDLPEEYLEALYDEIEYKEIKMKSDSLLPISSESSNLPK 716 (1514)
T ss_pred cchHHHHHHHHHHhccccCchhhccccHHHHHHhcccccCcccChHHHHHHHHHHhhhccccccccccccccCCCCcchh
Confidence 57899999998 56666654333 3432100 000
Q ss_pred ----------------------------------------cCchhHHHHHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHH
Q 000329 489 ----------------------------------------MGETAVLCISMVDSLWLTILDALSLILSRSQGEAIILEIL 528 (1653)
Q Consensus 489 ----------------------------------------~~~~~~~~~~m~~~~W~~iLaalS~~l~~s~De~~~~~lL 528 (1653)
+-.++.++++||+.+|.|++++++..|..++|......|+
T Consensus 717 ~~~~~~~~~l~~~~r~~~~~~s~~~~~~~e~~s~~~s~~~~ath~~~Vr~m~e~~W~p~laafs~~~~~sdd~~~~n~cl 796 (1514)
T KOG0929|consen 717 LLGLTGILNLRSNSRMSAIDMSASQSQLKEKGSLSESVFYSATHLISVRPMFESLWTPMLAAFSVGLQDSDDLEIANLCL 796 (1514)
T ss_pred hhccccccccchhhhhhHHHhhhhHHHHHHhcccccccceecccceeeeccccccccchhhhhchhhhcCCccccccccc
Confidence 0014557899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCCCCCcccccccccCCCCCcccccccccCCccCChHHHHHHHHHHHHHH
Q 000329 529 KGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNESDRRSAVLQSPGSKRSESLVDQKDNIVLTPKNVQALRTLFNIAH 608 (1653)
Q Consensus 529 ~gfq~~a~iag~l~L~~~rDafl~sL~k~t~~~~~~~~~~~~~~~~p~s~~~~~~~~~~~~~~l~~Kni~~lraLl~la~ 608 (1653)
+||+...|+++.++++..||||+++|.+||.++.. ..+..||+.++|+++.||+
T Consensus 797 ~g~r~ai~ia~~f~~~~~rdAfv~al~~ft~l~~~--------------------------~e~k~kNi~aik~l~~ia~ 850 (1514)
T KOG0929|consen 797 DGFRLAISIASIFSMELGRDAFVQALARFTNLHAP--------------------------SEMKQKNIDAIKALLEIAD 850 (1514)
T ss_pred cchhheeeehhhhcCCccccHHHHHHHHHHhccCH--------------------------HHHhHhhHHHHHHHHHHhh
Confidence 99999999999999999999999999999987511 1288999999999999999
Q ss_pred hccCcchhhHHHHHHHHHHHHHHhcCCCCCCcccc---------ccccc--c---c---c-cccCccchHhHHHHHHHHH
Q 000329 609 RLHNVLGPSWVLVLETLAALDRAIHSPHATTQEVS---------TASSK--L---A---R-ESSGQYSDFNVLSSLNSQL 670 (1653)
Q Consensus 609 ~lG~~L~~SW~~IL~tlq~l~~~~~~p~~~~~~~~---------~~~p~--~---~---~-~~~~~~~dl~il~~i~~~L 670 (1653)
..||+|..+|..|+.|+.+++++...+...+.... ...|+ . + + +..+.......+-++ +++
T Consensus 851 t~gn~l~~sW~~Il~cisqlE~~qli~sg~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~e~~~~~~s~s~vi~~-d~I 929 (1514)
T KOG0929|consen 851 TDGNKLFDSWLDILKCISQLEHTQLIGSGSPPNKLPFVVSQREDYKKPGGSYDSSGDGSRIENVGEKSSVSVVIQM-DRI 929 (1514)
T ss_pred cccchhHhHHHHHHHHHHHHHHHHHhcCCCCcccCcchhhhchhccCCcccccccccccchhccccchhHHHHHHh-hhh
Confidence 99999999999999999999999654333211100 00110 0 0 0 000111233445555 899
Q ss_pred HhhccCCChHHHHHHHHHHHHhhHHhhcCCCCCCCCCCCCCCCCcchhHHHHHHHHHHhhhc----chhhHHHHHHHHHH
Q 000329 671 FESSALMHISAVKSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSISFSVERMISILVNNLHR----VEPLWDQVVGHFLE 746 (1653)
Q Consensus 671 FesS~~l~~~al~~fv~ALc~lS~e~l~~~~~~~~~~~~~~~~~~~F~l~kL~ev~~~N~~R----~~~iW~~l~~hli~ 746 (1653)
|++|..++.+++++|++|||++|.+++..+. .|++|+++|++||+++||.| |..+|..+++||..
T Consensus 930 ft~S~~l~~eaIv~FvkaLc~vs~~eL~s~~-----------~PrlfslqK~VeIs~ynM~rIrl~ws~iw~vlg~~F~~ 998 (1514)
T KOG0929|consen 930 FTSSQRLDSEAIVDFVKALCKVSMDELLSPS-----------TPRLFSLQKLVEISYYNMNRIRLVWSRIWAVLGEFFVS 998 (1514)
T ss_pred hcccccCCchHHHHHHHHHHHHHHHHhcCCC-----------CCCeeecccceeeeccccccchhhHHHHHHHhhhhhhc
Confidence 9999999999999999999999999987652 47899999999999999998 79999999999999
Q ss_pred HhcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhcchhhhHHHHHHhccHHHHhccCCcHHHHHHHHH
Q 000329 747 LADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAGTLK 826 (1653)
Q Consensus 747 v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~dVr~~iL~ 826 (1653)
+++++|..+..+|+|+|+|+.++|+++++ ..++.||+.+++||+.++..+..++||++|++
T Consensus 999 vg~~~n~~vaifa~DslRQlsmkfle~~e-------------------l~~f~Fq~~fl~Pfe~im~~s~s~~Irelv~r 1059 (1514)
T KOG0929|consen 999 VGCNSNESVAIFALDSLRQLSMKFLERSE-------------------LDNFRFQKDFLRPFEHIMKRSSSAEIRELVVR 1059 (1514)
T ss_pred cccCCCCceEEEehhhhHHhhhhhcchhh-------------------hhhhhHHHhhcCcchHHhhccCcchhHHHHHh
Confidence 99999999999999999999999997642 45788999999999999999999999999999
Q ss_pred HHHHHHHhcCCccCCChHHHHHHHhhhhhccchhHHHHHHHHHHHHHhccCCCC-Ch--hhHHHHHHHHHHHHhcCCCcc
Q 000329 827 ILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSI-PT--DCIHECVDVTGAYSSQKTELN 903 (1653)
Q Consensus 827 ~L~~iL~~~g~~L~sgW~~If~IL~~~~~~~~~~lv~~aF~~LqlI~~dfL~~L-p~--~~~~~lV~~L~~F~~q~~dlN 903 (1653)
|+. +++++||+.||.|++.++.+..+.+|..+|+.+..|+.+++... |. ++|.+|+.|+.+|+.+....|
T Consensus 1060 C~~-------~nikSGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~cl~~F~~~~~~~~ 1132 (1514)
T KOG0929|consen 1060 CIS-------SNIKSGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEMDSFKDCVKCLEEFTKNLGFPD 1132 (1514)
T ss_pred hhh-------hhhhhhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHHHHHHHHHhcCCCc
Confidence 998 78899999999999999999999999999999999999999764 43 799999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHcccCCCchhhHhhhhcccCCCccccCcchhhhhhcccccccCCCCCcchhhhhHHHHHHHHHH
Q 000329 904 ISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLLFAVFSLLKK 983 (1653)
Q Consensus 904 ISLtAi~~lW~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~LW~~LL~~L~~ 983 (1653)
+|+.||.++|.|+.++..+ . + . ++.. ++. + + ....|...|+|++.++..
T Consensus 1133 ~s~~aI~~lr~ca~k~~e~-~-~-~-~~~~------------~~~------------~-~--~~~~~~~~wfP~l~~ls~ 1181 (1514)
T KOG0929|consen 1133 DSLNAIRFLRLCALKLAEG-V-Y-N-EKLK------------VGK------------D-S--EFDVWNSGWFPMLFQLSK 1181 (1514)
T ss_pred cchHHHHHHHHHHHHhccc-c-c-h-hhcc------------ccc------------c-c--ccccceeeeehhHhhhhH
Confidence 9999999999999999875 1 1 0 0000 000 0 0 123478999999999999
Q ss_pred hccCCcHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHhhhhhhccCCcccccccccCcCCCccchhhcccc
Q 000329 984 LGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHS 1063 (1653)
Q Consensus 984 L~~D~R~EVRn~AIqTLfril~~~G~~ls~~~W~~~~~~VLFPLld~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ihhs 1063 (1653)
++.|.|++||+.|++.+|.|+..||+.|+.++|+.+|. ++||+|+.++.....
T Consensus 1182 i~~~~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~-~~fpIF~~~~~~~~~-------------------------- 1234 (1514)
T KOG0929|consen 1182 IINDYRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFR-ILFPIFDNVKLDEDE-------------------------- 1234 (1514)
T ss_pred HhhccHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHH-heeecccccCcccch--------------------------
Confidence 99999999999999999999999999999999999999 999999999643111
Q ss_pred cchhhhhHH-HHHHHHHHHHHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhhcCCCCC
Q 000329 1064 RNTAQKQWD-ETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKGNL 1142 (1653)
Q Consensus 1064 r~t~~k~W~-ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~LL~~~~~~i~~~~~els~a~~~~L~~lL~~~~~~~~~ 1142 (1653)
++..+|. +|+++|++.++.||.+||+.+. .+...++..+..|+++++..++.++.+||.+++..++.++.
T Consensus 1235 --~~~~eW~~tT~~~Al~~~v~lf~~~~~~l~------~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~fs- 1305 (1514)
T KOG0929|consen 1235 --SEKDEWLSTTCNHALQALVDLFTQFFKQLN------NLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEKFS- 1305 (1514)
T ss_pred --hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhcccccC-
Confidence 1224598 9999999999999999999885 25567889999999999999999999999999999887774
Q ss_pred ChhhHHHHHHHHHHhhcC
Q 000329 1143 PVAYLNSVLDVYEYALQK 1160 (1653)
Q Consensus 1143 ~~~~~~~~~~~w~~~~~~ 1160 (1653)
++.|+.+.+....++..
T Consensus 1306 -e~~Wde~~~~~~e~~~~ 1322 (1514)
T KOG0929|consen 1306 -EEDWDEICNCILEAFKT 1322 (1514)
T ss_pred -HhhHHHHHHHHHHHHHh
Confidence 88898888877766654
No 4
>KOG0928 consensus Pattern-formation protein/guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8e-74 Score=720.28 Aligned_cols=1015 Identities=19% Similarity=0.253 Sum_probs=715.9
Q ss_pred hHHHHHHHHHHHHhCCCCC-C--cccCchhHHHHHHHHhcCC--CchhHHHHHHHHHHHHhcCCCCcc------hHHHHH
Q 000329 24 AVKDGAEHAILKLRSLSSP-S--ELAQSEDILRIFLMACEVR--TVKLSVIGLSCIQKLISHDAVAPS------ALKEIF 92 (1653)
Q Consensus 24 ~lk~A~e~al~~Lk~~~~~-~--~~~~~~~~l~PfllaC~sk--n~kl~~iaL~~lqkLi~~~~i~~~------~l~~Il 92 (1653)
+.++.--.++..||..-+. . +..++..||+||+..+.|. +|+||++||++++|++++++|+++ ++..++
T Consensus 40 ~~~~~ll~~f~~Lr~~ln~~~~l~~idp~~~L~PFL~vI~s~~~~g~iTslALssv~Kflt~~iid~~s~n~~~am~~~v 119 (1386)
T KOG0928|consen 40 TSSHSLLSSFKQLREVLNSLASLDTIDPLTYLSPFLEVIKSDETTGPITSLALSSVLKFLTLNIIDESSPNAADAMRNIV 119 (1386)
T ss_pred ccchHHHHHHHHHHHHhhchhhhccCChHhHHhHHHHHHhcccCCccHHHHHHHHHHHHheeeecCccCccHHHHHHHHH
Confidence 3455566666667665332 1 2467889999999999988 799999999999999999999975 689999
Q ss_pred HHHHcc----c-CCCCchHHHHHHHHHHHHHcCCC-CCCChHHHHHHHHHHHhhhcccCChHHHHHHHHHHHHHHHHHHH
Q 000329 93 SMLKNH----A-DMVDESVQLKTLQTILIIFQSRL-HPENEDNMAQALGICLRLLENNRSSDSVRNTAAATFRQAVALIF 166 (1653)
Q Consensus 93 ~~l~~~----~-~~~~e~vqLKILQ~L~~l~~s~~-~~~~g~~L~~~L~~C~~L~~~sk~~~vv~~TA~ATL~Qlv~~VF 166 (1653)
+|+++| + ..+||.|.|||||+|.+++.++. ..+.++.+.+.+++||++.+.++-+++.+++|++||..|+..||
T Consensus 120 ~AvthcRFe~td~~Sde~VllkilqvLr~lm~sp~~~lLSnq~Ic~ivqTcl~v~~q~~lselLr~~Ae~Tm~~~~~~IF 199 (1386)
T KOG0928|consen 120 DAVTHCRFEGTDPASDEVVLLKILQVLRSLMDSPAGALLSNQIICDIVQTCLRVVCQSRLSELLRKSAEHTMHDLTQLIF 199 (1386)
T ss_pred HHHHheeeeccCccchhHHHHHHHHHHHHHHhCchhhhcchhHHHHHHHHHHHHHHHHhHHHHhhcchhhhHHHHHHHHH
Confidence 999999 3 34799999999999999999975 45589999999999999988555556999999999999999999
Q ss_pred HhhhhhccCCC-C-------CcC---CCC----Cccccccccc--ccccccCCCCcccccccCCC-----Cc--c-----
Q 000329 167 DHVVRAESLPM-G-------KFG---SGA----HITRTNSVTG--DVSRSINHSESLEHEFASEG-----PS--L----- 217 (1653)
Q Consensus 167 ~rv~~ed~~~~-~-------~~~---~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~--~----- 217 (1653)
.|+++.++... + ..+ .+. ...+..+..+ +.....+.+.....+.+..+ +. +
T Consensus 200 srLk~~~~~~~~~~~~~~es~~~~~~~~~~i~~k~~en~e~~~~~~~a~~~~~~~~~~~~~~v~~~~~~~~~~~e~a~~~ 279 (1386)
T KOG0928|consen 200 SRLKYIEPPYVNEMYINDESYQGNVLKDDFIGTKRVENGEISSEDESATFDDGSISEKFEVPVQQVDREQETDEENAEAM 279 (1386)
T ss_pred HhCccccccccchhhcchHhhhcccccccccCcccCCCCCccCcccccccccccccccccCCccccccccCChhhhhhHh
Confidence 99998652110 0 000 000 0000000000 00000000000000000000 00 0
Q ss_pred ---hhhhhhhhhHHHHHHHHHHHHhhcCCCCCcccccchhHHHHHHHHHHHHHhCchhhccCHHHHHHHHHHHHHHHHHh
Q 000329 218 ---RRETLTKAGKLGLRLLEDLTALAAGGSASWLHVNTLQRTFVLDILEFILSNHVSLFRMLVSYEQVLRHQICSLLMTS 294 (1653)
Q Consensus 218 ---~~~~~~~~~~da~~vf~dLc~L~~~e~p~~l~~~~l~k~~~LELlesvL~n~~~~F~~hpel~~llr~~lc~lLi~~ 294 (1653)
...+..|+.+ ..|.-||.|++..++ ...++.-+.|+|.||++.++-.++.|+.||.|..++++.+...++.+
T Consensus 280 ~~~~~~ygip~~~---~~~h~l~sl~~~~n~--~~~~es~~~~~l~lin~aie~~g~~i~~~prll~liqd~~fk~l~~~ 354 (1386)
T KOG0928|consen 280 AAMDENYGIPVMK---DIFHFLLSLLNVTNT--VAHDESVRSFALVLINSAIELGGDCIREHPRLLRLIQDPLFKHLIEF 354 (1386)
T ss_pred hcccccCCCceec---cchhhhhhhcccccc--ccchhhhhHHHHHHHHhhHhhcchHHHHhhHHHHHhccHHHHHHHHH
Confidence 0111123323 356668988887665 34556789999999999999999999999999999999999888887
Q ss_pred hcccccCCCCCCCchHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHHHhcChHHHH
Q 000329 295 LRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVKVT---FLDLPLWHRILVLEILRGFCVEARTLR 371 (1653)
Q Consensus 295 ls~n~~~~~~~~~~~F~~~~lRi~~~Li~~~~~~L~~E~EvfLs~Li~~l---~~~~~~w~r~L~LEvl~~l~~dp~ll~ 371 (1653)
+...+..+ -.+.+.++...++..+...++.+++.+.|.|++.+..+. +...|..||+++||.+-.+|+.|.|+.
T Consensus 355 ~~~~~k~s---~~~~~Lql~~s~vl~l~~~lr~~~k~qle~~Fs~l~~~~~~~~~~~~~~~~e~ale~lv~~~R~p~F~~ 431 (1386)
T KOG0928|consen 355 LQIPTKMS---LERLVLQLFCSLVLNLYLALREQLKLQLEAFFSILLLRGTAEEYGPPYEQQEVALEALVLLCRIPSFLT 431 (1386)
T ss_pred Hhhcccch---hhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHH
Confidence 73211100 023344455555566666688899999999999887765 233477999999999999999999999
Q ss_pred HHHHhcCCCCCCcchHHHHHHHHHHHhcc---------ccc-----------------c--CC-----c-----------
Q 000329 372 LLFQNFDMNPKNTNVVEGMVKALARVVSS---------VQF-----------------Q--ET-----S----------- 407 (1653)
Q Consensus 372 ~iy~nYD~~~~~~nI~~~li~~L~~~~~~---------~~~-----------------~--~~-----s----------- 407 (1653)
++|.|||||.+|.|||+++++.|+|.+-- ++. + +. .
T Consensus 432 e~yvNfDCd~~csnlfedl~k~LtknafP~sg~~tt~~i~~l~l~~v~~l~e~~~~~l~~~d~~ef~~~k~e~~v~~iR~ 511 (1386)
T KOG0928|consen 432 EMYVNFDCDLYCSNLFEDLIKLLTKNAFPVSGPLTTASILPLDLEGVLGLAENMIDELQDSDREEFWTDKCEVWVLFIRS 511 (1386)
T ss_pred HHHHhcCCchhhhhhHHHHHHHHHHccCCcccccccccccchHHHHHHHHHHHHHhhccccCcCccccCCcchhhhhhcc
Confidence 99999999999999999999999997631 111 0 00 0
Q ss_pred ---HHHHHHhhhcccCccc-cccccccc-------C-------------------------cCCCcc-------------
Q 000329 408 ---EESLSAVAGMFSSKAK-GIEWILDN-------D-------------------------ASNAAV------------- 438 (1653)
Q Consensus 408 ---~e~l~~~~~~f~~k~k-Gi~~ll~~-------d-------------------------~~~~~~------------- 438 (1653)
.--+..|+..||.+|| ||+|+..+ | +.|..+
T Consensus 512 rk~K~~li~gae~FNe~pkKGi~fL~ek~li~~~~d~~~~~~ffr~n~rLdKk~iGdfLc~~k~~~vLn~Fi~tFdF~gm 591 (1386)
T KOG0928|consen 512 RKRKRELILGAELFNEDPKKGIEFLQEKGLIPSDLDPTSVAEFFRYNPRLDKKTIGDFLCDPKNVSVLNEFIGTFDFQGM 591 (1386)
T ss_pred chhhHHHHHHHHHhccChhhHHHHHHhcCccCCCCChHHHHHHHHhCccccHHHHHHHhcCcchHHHHHHHHHhcCcCCC
Confidence 0012347899999998 99876421 1 112111
Q ss_pred -------------cCcchhhhHHHHHHHHHH-------------------HHHHHHhhccc-------------------
Q 000329 439 -------------LVASEAHSITLAIEGLLG-------------------VVFTVATLTDE------------------- 467 (1653)
Q Consensus 439 -------------ll~~Ea~~I~~~~e~~a~-------------------~i~sv~~L~~~------------------- 467 (1653)
.+|||+|+|.|++|.|++ ++|||||||||
T Consensus 592 rlDeALRl~L~sFRLPGESQ~IeRVlEAFSery~~~n~~~~~~~kDavFvLsYSIIMLNTDqHNpqVK~~MT~dDf~rNl 671 (1386)
T KOG0928|consen 592 RLDEALRLFLESFRLPGESQKIERVLEAFSERYYSDNSPDIFADKDAVFVLSYSIIMLNTDQHNPQVKRKMTFDDFIRNL 671 (1386)
T ss_pred cHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhcCCCccccccchhhhhhhhhheecccccChhhhccCCHHHHhhhc
Confidence 189999999999999986 46899999998
Q ss_pred -ccccccccCC----CcCCCCCCC------CccC--------------------------chhHHHHHHHHHhhHHHHHH
Q 000329 468 -AVDVGEVLES----PRCDYDPLP------KCMG--------------------------ETAVLCISMVDSLWLTILDA 510 (1653)
Q Consensus 468 -~~~~g~d~~~----~~~~~~~~~------~~~~--------------------------~~~~~~~~m~~~~W~~iLaa 510 (1653)
|+|+|+|++. .+|..++.+ +..| ....+++.||..+|+|++||
T Consensus 672 rg~n~g~DFpreyLseiY~SIk~~EIvmPee~hG~~~~~~~~W~~L~~~sktt~~~~~~~~~~~~drdlF~~v~gp~iaa 751 (1386)
T KOG0928|consen 672 RGINGGKDFPREYLSEIYQSIKTNEIVMPEEHHGTEEMFEYRWINLISRSKTTEPFILRDFTLVYDRDLFAMVWGPIIAA 751 (1386)
T ss_pred ccccCCCCCCHHHHHHHHHHHhhcceecccccCCchhhhHHHHHHHHhcccccCceeeccchhhhhHHHHHHHccchHHH
Confidence 6778886544 445433211 1111 02357899999999999999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCCCCCcccccccccCCCCCcccccccccCCc
Q 000329 511 LSLILSRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNESDRRSAVLQSPGSKRSESLVDQKDNI 590 (1653)
Q Consensus 511 lS~~l~~s~De~~~~~lL~gfq~~a~iag~l~L~~~rDafl~sL~k~t~~~~~~~~~~~~~~~~p~s~~~~~~~~~~~~~ 590 (1653)
++++|+.+.++++++.|+.|+++|+.+++++|+.++.|..+..|||||.+.+... +| .+. ....
T Consensus 752 ls~vFd~a~~d~I~~r~i~g~~k~a~isA~y~l~dv~ddli~slCkfTtL~~~s~--------~~----eel----~~~f 815 (1386)
T KOG0928|consen 752 LSYVFDVAESDTILQRCIDGIRKCAKISAYYGLKDVFDDLIISLCKFTTLLNPSS--------TP----EEL----VLAF 815 (1386)
T ss_pred HHHHhchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccccCCcc--------Cc----hHH----HHHh
Confidence 9999999999999999999999999999999999999999999999999742211 00 000 0113
Q ss_pred cCChHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHhcCCCCCC------cc--ccccccc------ccc--ccc
Q 000329 591 VLTPKNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHSPHATT------QE--VSTASSK------LAR--ESS 654 (1653)
Q Consensus 591 ~l~~Kni~~lraLl~la~~lG~~L~~SW~~IL~tlq~l~~~~~~p~~~~------~~--~~~~~p~------~~~--~~~ 654 (1653)
+-+.|...+++|++-+++..|+.++.+|..|++++.++.+....|.... .. ..++.|. ..+ +++
T Consensus 816 ged~ka~~At~tvf~~~n~~Gd~i~~gw~nI~~~~l~l~r~~llp~~~~e~~~~~~~~~~~~~~~~~~~~~~~~k~~~ss 895 (1386)
T KOG0928|consen 816 GEDTKARMATLTVFFGANKFGDLIRVGWRNIVECLLQLNRLVLLPLRLIEDLKNEPELLKLNKLPVPQQEISINKPRKSS 895 (1386)
T ss_pred cccchhHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhhccCcHhhhhhhhcCccccccCCCCCCccccCcccccccc
Confidence 3478999999999999999999999999999999999988776665411 00 0000000 001 111
Q ss_pred C-------------------cc-chH-------hHHHHH-HHHHHhhccCCChHHHHHHHHHHHHhhHHhhcCCCCCCCC
Q 000329 655 G-------------------QY-SDF-------NVLSSL-NSQLFESSALMHISAVKSLLSALHQLSHQCMIGTSSSFGP 706 (1653)
Q Consensus 655 ~-------------------~~-~dl-------~il~~i-~~~LFesS~~l~~~al~~fv~ALc~lS~e~l~~~~~~~~~ 706 (1653)
+ .. .++ ..++.. .+++|+.|+.+..+++.+++++|...+...
T Consensus 896 ~Lls~fs~~Ls~d~e~~~~~Ptee~l~~~~~a~~cIk~c~i~~if~~s~~l~~~~l~~Ll~Sli~~s~~~---------- 965 (1386)
T KOG0928|consen 896 GLLSRFSSYLSGDEEEERPCPTEEELSASKKALECIKECHIDQIFTKSKFLQAKSLLTLLKSLIAASNDL---------- 965 (1386)
T ss_pred hHHHHHHHhcCCcccccCCCCcHHHHhhhHHHhhHHHhcCHHHHhhhcccccHHHHHHHHHHHHHhcCCc----------
Confidence 0 00 011 122221 267999999999999999999999887542
Q ss_pred CCCCCCCCcchhHHHHHHHHHHhhhcchhhHHHHHHHHHHHhcCC---ChhHHHHHHHHHHHHHHHHhcccccccccccc
Q 000329 707 TSSQKIGSISFSVERMISILVNNLHRVEPLWDQVVGHFLELADNS---NQHLRNIALDALDQSICAVLGSEKFQDSASRQ 783 (1653)
Q Consensus 707 ~~~~~~~~~~F~l~kL~ev~~~N~~R~~~iW~~l~~hli~v~~~~---n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~ 783 (1653)
+...+.+..|+++.|+.|.+.|.+|...+|..+.+|+..++..+ ...+.+.|+-.+.+++.+.+..+.|-
T Consensus 966 -s~~de~s~~F~lElli~I~l~nrdri~l~w~~~~e~ll~~~~~~~~~~~~lvek~v~gl~rv~~rll~yk~~l------ 1038 (1386)
T KOG0928|consen 966 -SMEDEESAVFCLELLIAITLSNRDRILLSWFAVYEHLLGLLIQTLMGSPLLVEKAVSGLLRVVNRLLPYKEFL------ 1038 (1386)
T ss_pred -cCcccchHHHHHHHHHHHHhccccceEeeehhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHhhhhhhh------
Confidence 11234567999999999999999999999999999999877654 56788999999999998887543221
Q ss_pred CCCChhhhhcchhhhHHHHHHhccHHHHhcc--CCcHHHHHHHHHHHHHHHHhcCCcc--CCChHHHHHHHhhhhhccch
Q 000329 784 RGTSDEVESRHGDLRSIECAVISPLRVLYFS--TQSTDVRAGTLKILLHVLERCGEKL--HYSWPSILELLRSVADASEK 859 (1653)
Q Consensus 784 ~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~--~~~~dVr~~iL~~L~~iL~~~g~~L--~sgW~~If~IL~~~~~~~~~ 859 (1653)
.+....+++ .+... ......-+++-..+.+++..+..+. +.||.++|..|..++. ++
T Consensus 1039 ---------~d~l~~sl~--------~ll~L~~ki~d~~~~ki~i~~~~lv~~n~~~v~~~~~w~~~~slL~~~~~--h~ 1099 (1386)
T KOG0928|consen 1039 ---------SDELLDSLR--------ILLKLDPKILDAFLDKIAIFVSKLVKANAANVHSKDGWALLFSLLELTAR--HP 1099 (1386)
T ss_pred ---------hHHHhhhHH--------HHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHhc--CC
Confidence 011223333 32221 1122556677777888888877776 4699999999998877 44
Q ss_pred hHHHHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH--HHHHHcccCCCchhhHh-hhhc
Q 000329 860 DLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAYSSQKTELNISLTAVGLLWTT--TDFIAKGLVHGISEEKE-AANQ 936 (1653)
Q Consensus 860 ~lv~~aF~~LqlI~~dfL~~Lp~~~~~~lV~~L~~F~~q~~dlNISLtAi~~lW~i--sD~L~~~~~~~~~~~k~-~~~~ 936 (1653)
..-..+|..+--.+.|-.+ ++++.|..||+|...|+.... . ..-|.+ -|-.... +..-.|- ....
T Consensus 1100 ~a~~~~~~~~l~~m~e~~h-l~~~~fe~~v~~~~~fve~~~------~--~~~~~l~~lde~s~s---g~~~~kw~~~~~ 1167 (1386)
T KOG0928|consen 1100 EADFLKFYRLLSKMSEASH-LTPDNFELYVDCGSTFVEARV------G--QIMRSLSLLDEMSSS---GEVLDKWEIEAK 1167 (1386)
T ss_pred chhHHHHHHHHHHhhcccc-CChHHHHHHHHHHHHHHHHHH------H--HHHHhcchhhhhccc---ccchhHHHHHHh
Confidence 4444555555555556555 556779999999999987531 1 111111 1111110 0000000 0000
Q ss_pred ccCCCccccCcchhhhhhcccccccCCCCCcchhhhhHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHhccCCCCHHHH
Q 000329 937 DLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMW 1016 (1653)
Q Consensus 937 ~~~s~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~LW~~LL~~L~~L~~D~R~EVRn~AIqTLfril~~~G~~ls~~~W 1016 (1653)
. .. .++ +...........+|+++++.+.++|.|.|.+|||.|++.++|++.+-++.|....|
T Consensus 1168 ~---~~--~~~-------------~~~~~~~~~~~~~wl~l~~~~~kl~L~~r~~vRn~aL~~lqr~~~~~~q~l~~~~~ 1229 (1386)
T KOG0928|consen 1168 N---AT--ESG-------------DESKKSNNYRSEIWLILLQIIRKLCLLSRRGVRNAALTKLQRIIGALDQGLAHSYW 1229 (1386)
T ss_pred h---hh--ccc-------------ccccccchhhHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHhhhcccchHHH
Confidence 0 00 000 00000112233599999999999999999999999999999998888899999999
Q ss_pred HHHHHHhHHHHHHhhhhhhccCCcccccccccCcCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 000329 1017 EDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANL 1096 (1653)
Q Consensus 1017 ~~~~~~VLFPLld~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ihhsr~t~~k~W~ET~vlaL~gl~~lf~~~~~~L~~~ 1096 (1653)
..||..|+||+++.+.......+.. + ..+.+|++++.+.++++|.+++..+...
T Consensus 1230 ~~Cf~~vlfpll~~l~~~l~~~~~~----------------------~----~~me~t~~~~~~Ll~k~~L~~lq~ls~~ 1283 (1386)
T KOG0928|consen 1230 NPCFDLVLFPLLTDLLELLSDASEK----------------------G----NEMEVTLLLATKLLSKVFLQELQDLSSL 1283 (1386)
T ss_pred HHHHHHHhHHHHHHHHHHhcccccc----------------------c----chHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 9999999999999998654322110 0 1367999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHcCCc-----hHHHHHHHHHHHHHHhhhcCCCCCC-------hhhHHHHHHHH
Q 000329 1097 SNFWTGWESLLHFVKNSILNGS-----KEVSLAAINCLQTTVLSHSTKGNLP-------VAYLNSVLDVY 1154 (1653)
Q Consensus 1097 ~~F~~~W~~LL~~~~~~i~~~~-----~els~a~~~~L~~lL~~~~~~~~~~-------~~~~~~~~~~w 1154 (1653)
+.|..+|..+|+++++++..+. .-+..++.+.+++++..|...+.+. ...|+..|.--
T Consensus 1284 ~~f~~Lwl~~ld~m~~l~~~~~~e~~~~~l~e~~pe~l~~~~~~m~~~ei~~~~~~~~~~~~w~~tw~~~ 1353 (1386)
T KOG0928|consen 1284 SMFSTLWLGVLDRMEKLMRGKTSEETSDKLNEIVPELLKNMLLVMKLQEIILDKDEIGKDSLWEITWERL 1353 (1386)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccchhhhHHhhhhhhhhhhhhhhhccccccCcccccccchHHHHHHHH
Confidence 9999999999999999997554 5699999999999999998655432 23666555433
No 5
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=99.96 E-value=9.3e-29 Score=268.40 Aligned_cols=156 Identities=32% Similarity=0.507 Sum_probs=141.7
Q ss_pred hhhHHHHHHHHHHHHhh-----cCCCCCcccccchhHHHHHHHHHHHHHhCchhhc---cCHHHHHHHHHHHHHHHHHhh
Q 000329 224 KAGKLGLRLLEDLTALA-----AGGSASWLHVNTLQRTFVLDILEFILSNHVSLFR---MLVSYEQVLRHQICSLLMTSL 295 (1653)
Q Consensus 224 ~~~~da~~vf~dLc~L~-----~~e~p~~l~~~~l~k~~~LELlesvL~n~~~~F~---~hpel~~llr~~lc~lLi~~l 295 (1653)
.+.+||++||++||+|+ .+++|.|++.+..+|.+|||||+++|+++|+.|. +||+|.+++|+++||.|++++
T Consensus 3 ~~~~Da~~vf~~Lc~L~~~~~~~~~~~~~~~~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~ 82 (168)
T PF12783_consen 3 YYVKDAFLVFRDLCSLSSKPSDPGNSPDFLSHDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNL 82 (168)
T ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999 6667888888888999999999999999999999 666999999999999999988
Q ss_pred cccccCCCCCCCchHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH-hcCCCC-CHHHHHHHHHHHHHHhcChHHHHHH
Q 000329 296 RTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVK-VTFLDL-PLWHRILVLEILRGFCVEARTLRLL 373 (1653)
Q Consensus 296 s~n~~~~~~~~~~~F~~~~lRi~~~Li~~~~~~L~~E~EvfLs~Li~-~l~~~~-~~w~r~L~LEvl~~l~~dp~ll~~i 373 (1653)
.++ +.+.| .+++|++++++.+|+++||.|+|+|++.+++ +++++. |.|||+++||+++++|++|++++++
T Consensus 83 ~~~-------~~~i~-~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l~~l 154 (168)
T PF12783_consen 83 SSS-------DFPIF-SRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKDPQFLVDL 154 (168)
T ss_pred hhh-------hhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHHHHH
Confidence 752 23445 4799999999999999999999999999888 777766 6899999999999999999999999
Q ss_pred HHhcCCCCCCcchH
Q 000329 374 FQNFDMNPKNTNVV 387 (1653)
Q Consensus 374 y~nYD~~~~~~nI~ 387 (1653)
|.||||+.+++|||
T Consensus 155 f~NYDCd~~~~nif 168 (168)
T PF12783_consen 155 FVNYDCDLNSKNIF 168 (168)
T ss_pred HHHcCCCCCCCCCC
Confidence 99999999999996
No 6
>COG5307 SEC7 domain proteins [General function prediction only]
Probab=99.87 E-value=5.4e-21 Score=248.38 Aligned_cols=734 Identities=17% Similarity=0.161 Sum_probs=490.0
Q ss_pred hHHHHHHHHHHHHHhCchhhccCHHHHHHHHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHHHHHHHHhhhHhHH
Q 000329 254 QRTFVLDILEFILSNHVSLFRMLVSYEQVLRHQICSLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITEC 333 (1653)
Q Consensus 254 ~k~~~LELlesvL~n~~~~F~~hpel~~llr~~lc~lLi~~ls~n~~~~~~~~~~~F~~~~lRi~~~Li~~~~~~L~~E~ 333 (1653)
++..+|+++.++|..|. .|..+++.+.|-.+.+...+ . ..|+|. ..+.+++..+..+....+.|.
T Consensus 27 ~~l~~l~~~~~~l~~~~-------~l~~~~~~~~~l~~~~~a~s----~---~~~v~~-v~~~i~~~~~~~~~~~f~~~~ 91 (1024)
T COG5307 27 SKLYSLPVSYSILRDFK-------LLLDLLFPYLRLKLSLSARS----P---LLPVFE-VGLEIIGLRLSNLPKLFKLES 91 (1024)
T ss_pred cccccccchHHHhccch-------HHHHHhcchhhhhhhhcccc----c---chhhhh-hhHHHHHHHHhhhhhhhhhcc
Confidence 67888888888888766 78889999999544332221 1 246664 578899999999999999999
Q ss_pred HHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHHhcChHHHHHHHHhcCCCCC-CcchHHHHHHHHHHHhccccc-------
Q 000329 334 EVFLSMLVKVT-FLDL-PLWHRILVLEILRGFCVEARTLRLLFQNFDMNPK-NTNVVEGMVKALARVVSSVQF------- 403 (1653)
Q Consensus 334 EvfLs~Li~~l-~~~~-~~w~r~L~LEvl~~l~~dp~ll~~iy~nYD~~~~-~~nI~~~li~~L~~~~~~~~~------- 403 (1653)
++|+...+..+ +... ..-|+.+-|-+.+++|..|+ ++.|.+|||... +.|+.++...-+.+.+++.|.
T Consensus 92 ~~~f~s~~f~i~~~~~~s~~q~~~~l~~~~~~~~~~r--l~~~i~~d~~~~~~~~~~~~~~~~~s~~~t~~p~~~~~~~~ 169 (1024)
T COG5307 92 SVFFISIYFPISHTTSTSLQQKSSELSTSQVVILLSR--LERYINYDVGRGFMENITERTAFPLSRPSTNDPPETRSLII 169 (1024)
T ss_pred chHHHHHhhhhhcccccchhhhhHHhHhhhhhhcccc--hhhhcccccccccchhhhhccCCccccccccCCCcchhhhh
Confidence 99987666544 5433 45788889999999999999 899999999987 778877777666655532110
Q ss_pred ---------------------c------------------------------C---Cc----------------------
Q 000329 404 ---------------------Q------------------------------E---TS---------------------- 407 (1653)
Q Consensus 404 ---------------------~------------------------------~---~s---------------------- 407 (1653)
+ + .+
T Consensus 170 e~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~is~l~~l~~~sl~~s~~~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~d~ 249 (1024)
T COG5307 170 EQLSILWISSPYFFLTLISDFQCDLDSSDCSISFLKGLTKNSLVPSAYYTNKDVPPLSGEGLVSGSKSMVNSMKNSSRDS 249 (1024)
T ss_pred hhhhhcCCCCCccccccccchhhhhHHHHHHHHHHHHHhhcccchhhhhcccCCCCcccchhhhcCCcccccccccccCh
Confidence 0 0 00
Q ss_pred H------HH------------HHHhhhcccCccc-cccccccc-------------------------------------
Q 000329 408 E------ES------------LSAVAGMFSSKAK-GIEWILDN------------------------------------- 431 (1653)
Q Consensus 408 ~------e~------------l~~~~~~f~~k~k-Gi~~ll~~------------------------------------- 431 (1653)
+ .. ...++..||.||+ ||..+.+.
T Consensus 250 ~s~~~~~~~~~~~~~k~rkt~~~e~~~~fn~kp~~gi~~l~~~~~i~~d~~~sia~~L~~~~~~l~k~~lg~~L~~~~~k 329 (1024)
T COG5307 250 SSFVNSDSSIVNLGIKKRKTELIECIQAFNEKPKKGIASLIDSEFIDSDSHKSIAEILEGTEGRLDKKKLGLYLGTDDDK 329 (1024)
T ss_pred hhhccchHHHhhhccccchHHHHHHHHHhhhcCcccchhhcccccCCcccchHHHHHHHhccCcccHHHHHHHhcCCchh
Confidence 0 00 1125678888887 87644211
Q ss_pred ------------CcCCCcc-----------cCcchhhhHHHHHHHHHH-------------------HHHHHHhhccc--
Q 000329 432 ------------DASNAAV-----------LVASEAHSITLAIEGLLG-------------------VVFTVATLTDE-- 467 (1653)
Q Consensus 432 ------------d~~~~~~-----------ll~~Ea~~I~~~~e~~a~-------------------~i~sv~~L~~~-- 467 (1653)
|..++++ .+|||+|+|+|++|+|+. ++||++|||||
T Consensus 330 n~~vL~~Fi~~fdFk~~~i~eALR~lL~sfrLPgEaQqIDRile~FS~~Y~~~Np~~~~~~~D~vyiLafSlimLNTDlH 409 (1024)
T COG5307 330 NNAVLREFISLFDFKGLDIDEALRKLLQSFRLPGEAQQIDRILEAFSDKYYSDNPKKFSSKPDSVYILAFSLIMLNTDLH 409 (1024)
T ss_pred HHHHHHHHHHhcCcCCCcHHHHHHHHHHheecCchHHHHHHHHHHHHHHHHHhCcccccCccceeehhHHHHHHHhcccc
Confidence 1112222 189999999999999985 57899999998
Q ss_pred ------------------ccccccccCCC----cCCCCCCCC-----------------------------ccCchh--H
Q 000329 468 ------------------AVDVGEVLESP----RCDYDPLPK-----------------------------CMGETA--V 494 (1653)
Q Consensus 468 ------------------~~~~g~d~~~~----~~~~~~~~~-----------------------------~~~~~~--~ 494 (1653)
|.+.|++++.. .|+++..++ ..++.. .
T Consensus 410 Np~iK~kMT~~df~~N~~g~n~g~~~~~~~L~~~Y~~I~~kei~~~e~~~~~~~~~~~~~~~~~ss~~~~~~~~rd~~~~ 489 (1024)
T COG5307 410 NPNIKAKMTFEDFSKNLRGENTGRDFPEEFLEEFYDNIKKKEIVLPEEHHSSETSPEDNWPSLDSSFTNIAEFGRDNQRV 489 (1024)
T ss_pred ChhhhccccHHHHHhhhcccCCccccCHHHHHHHHHHHhhccccchhhcccccccccccchhhhhhhhhhhhcccccccc
Confidence 34555543332 343321100 001111 1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCCCCC-ccccccccc
Q 000329 495 LCISMVDSLWLTILDALSLILSRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNE-SDRRSAVLQ 573 (1653)
Q Consensus 495 ~~~~m~~~~W~~iLaalS~~l~~s~De~~~~~lL~gfq~~a~iag~l~L~~~rDafl~sL~k~t~~~~~~-~~~~~~~~~ 573 (1653)
..+.+|+..|+.+++++...++...++-+....+.+++++..+|..|++..|||+|+.++++++.+.... ++... ..
T Consensus 490 ~~~~~f~~v~~~~et~~~~i~~s~s~~~~~s~~~~si~~~~~ia~~f~~n~p~~~~~~~~s~~t~l~~~S~~~~~~--~~ 567 (1024)
T COG5307 490 ADATHFDHVGPIFETSLFPILMSASDDLYSSDGVVSISKCTRIAANFDFNDPRDAFLESLSEFTTLINSSVSEGPY--LF 567 (1024)
T ss_pred hhHhhhhhcchHHHHHHHHHHhhhcchhcccccchHhhcccchhhcceecchhHHHHHHhhccCCccccCcccccc--cc
Confidence 2347888888888888888888888877778889999999999999999999999999999999875322 11100 00
Q ss_pred CCCCCc--ccccccccCCccCChHHHHHHHHHHHHHHhccC--cc-hhhHHHHHHHHHHHHHHhcCCCCCCccccccccc
Q 000329 574 SPGSKR--SESLVDQKDNIVLTPKNVQALRTLFNIAHRLHN--VL-GPSWVLVLETLAALDRAIHSPHATTQEVSTASSK 648 (1653)
Q Consensus 574 ~p~s~~--~~~~~~~~~~~~l~~Kni~~lraLl~la~~lG~--~L-~~SW~~IL~tlq~l~~~~~~p~~~~~~~~~~~p~ 648 (1653)
.+.... ..+..+....+.-.-+++.+...++.+....|+ .+ ...|..+-..-..+........... ..|.
T Consensus 568 ~~~~d~~~~is~~~~~~~i~~~~~~ql~~v~~~~~~~k~~~~~i~~s~~~~~i~~~~~~~~~~~l~~~~~~-----~~~~ 642 (1024)
T COG5307 568 IPSEDSLLSISVLELAARIGRGFEDQLSDVKLFRLRSKSGNKEILSSSLLSNIENKSLKLYLSSLIEDGKH-----FSPS 642 (1024)
T ss_pred CccccccchhhHHHHHHHhcccchhhcchhHHhHHhhccccccccchhhhhhhhhhHhhhhhhhhcCCCcc-----cccc
Confidence 010000 000000001122234888888899999887777 34 4588877666555543322111100 0011
Q ss_pred ccccccCccchHhHHHHHHHHHHhhccCCCh-HHHHHHHHHHHHhhHHhhcCCCCCCCCCCCCCCCCcchhHHHHHHHHH
Q 000329 649 LARESSGQYSDFNVLSSLNSQLFESSALMHI-SAVKSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSISFSVERMISILV 727 (1653)
Q Consensus 649 ~~~~~~~~~~dl~il~~i~~~LFesS~~l~~-~al~~fv~ALc~lS~e~l~~~~~~~~~~~~~~~~~~~F~l~kL~ev~~ 727 (1653)
..+... ..++ ....++++...+.++. .++..++.+++.... + .| .+++.+++.+
T Consensus 643 ~~~~~~--~~~~---~~~~~~i~~~~s~~s~~~~~l~~~k~~~~~d~-----~------------~~---~~q~~v~~s~ 697 (1024)
T COG5307 643 IVKKLG--SPEL---PKLNPDISSGKSKLSVWSAVLSVFKAILSSDL-----P------------SP---PLQKEVDISK 697 (1024)
T ss_pred cccccc--Cccc---cccCcccccccccccccchHHHHHHHHHhccC-----C------------CC---CcHHhhhHHh
Confidence 110000 0011 1122577777788887 889999999997211 0 11 7889999999
Q ss_pred Hhhhcc---hhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhcchhhhHHHHHH
Q 000329 728 NNLHRV---EPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAV 804 (1653)
Q Consensus 728 ~N~~R~---~~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~l 804 (1653)
.||.++ ..+|..+....-.+..+.+..+..++.+..+++...+.+.+ +.....|+..+
T Consensus 698 ~n~~~i~~~~~i~~~~~~~~~~~~~~~~~~l~~s~~~~~~q~s~~f~~ie-------------------e~~~~~f~~~~ 758 (1024)
T COG5307 698 KNVDIIKSESKISNVLFKNSEGLSPDLNKTLLESALDSKSQLSSRFLEIE-------------------ELSDFGFQIAL 758 (1024)
T ss_pred hhhhhhhhhhHHHhhcccchhhccccccccchhcccchhhhhccccCChh-------------------hhcchhHHHHH
Confidence 999984 56999999999999999999999999999999988766532 12345688888
Q ss_pred hccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCccCCChHHHHHHHhhhhhccchhHHHHHHHHHHHHHhccCCCCChhh
Q 000329 805 ISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDC 884 (1653)
Q Consensus 805 l~pl~~L~~~~~~~dVr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~~~~~~~~~lv~~aF~~LqlI~~dfL~~Lp~~~ 884 (1653)
+.|+...........|++..+.|.+.++++....+.+| +++|+++...... .. ++..+..+.. .|. -..+.++
T Consensus 759 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~s~~~s~-~~i~~~~~~~~~~--~~-~~~~~s~~~~--~e~-v~s~~n~ 831 (1024)
T COG5307 759 LLPFEYSVEVSLVVAVKELVIGCSDNLLTEAASSIASG-KTIFEISAYEDLS--ST-LRYILSSLSN--DEL-VLSQENL 831 (1024)
T ss_pred hccccccccccceeeeeeeehhhHHHHHHHHHHhhhcc-ccceeeeeccccc--ch-hhhHHHHhcc--hhh-hhChhhH
Confidence 89988776677778999999999999999999999999 9999988765331 11 3444443332 122 2234477
Q ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHcccCCCchhhHhhhhcccCCCccccCcchhhhhhcccccccCCC
Q 000329 885 IHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHS 964 (1653)
Q Consensus 885 ~~~lV~~L~~F~~q~~dlNISLtAi~~lW~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~l~~~~~~~ 964 (1653)
|...+-+-........++-+.+.++.++......+..+ ...+ ....
T Consensus 832 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w-k~~~--~~~~------------------------------- 877 (1024)
T COG5307 832 FIELLSSKNEGKQNDKNLELRLHSVDYLRFLLPNVENW-KNLS--SVLS------------------------------- 877 (1024)
T ss_pred HHHHHhhhHHHHHhccchhhhhccHHHHHHHhHHHHHH-HHHH--HHHH-------------------------------
Confidence 88888888888888888888888887776554444432 0000 0000
Q ss_pred CCcchhhhhHHHHHHHHHHhc-cCCcHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHhhhhhhccCCcccc
Q 000329 965 IGMVDRDKLLFAVFSLLKKLG-ADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEW 1043 (1653)
Q Consensus 965 ~~~~~~~~LW~~LL~~L~~L~-~D~R~EVRn~AIqTLfril~~~G~~ls~~~W~~~~~~VLFPLld~l~~~~~~~~~~~~ 1043 (1653)
.. ....+.|++.|.++.++. .-.-.|+ |..+..+++.+..+.|+.+.+.-++|++....-....
T Consensus 878 ~~-~~~~~~~~~~l~~~~~i~~~~~~l~~--------f~~~l~~~d~~~~~~~e~i~~~~~~~~~~~~~~~~~~------ 942 (1024)
T COG5307 878 AN-SNFSKDIFSYLEKYVKIGSSALDLEN--------FDQLLSLLDDFMSAFWEKISKKESFYIKSGASGPNSD------ 942 (1024)
T ss_pred hh-hhhhHHHHHHHHHHHHhchhhhhHHH--------HHHHHHhhhHHHHHHHHHHhhhhhheeccccccCccc------
Confidence 00 112578999999998865 3455666 8899999999999999999999999998866422111
Q ss_pred cccccCcCCCccchhhcccccchhhhhHH-HHHHHHHHHHHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHcCCchHHH
Q 000329 1044 QGKELGTRGGKAVHMLIHHSRNTAQKQWD-ETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVS 1122 (1653)
Q Consensus 1044 ~~~~~~~~~~~~~~~~ihhsr~t~~k~W~-ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~LL~~~~~~i~~~~~els 1122 (1653)
..+. . ++...-.|. .+.+.++...+-+|...|+.+.. ..| .+.+...| .+...++.
T Consensus 943 ~~~~-----------~----~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~-----~~~--~~~l~~~c-~~~~~~~~ 999 (1024)
T COG5307 943 KTNL-----------D----NDEIELVWASTDLLAALKEFIELFNSIFEKLEI-----LAG--KLILLHQC-LNNCDQLG 999 (1024)
T ss_pred cccc-----------c----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH--HHHHHHhh-cCcHhhhh
Confidence 0001 0 234446788 78888999999999999987752 244 44445555 44456788
Q ss_pred HHHHHHHHHHHh
Q 000329 1123 LAAINCLQTTVL 1134 (1653)
Q Consensus 1123 ~a~~~~L~~lL~ 1134 (1653)
..+++++++.+-
T Consensus 1000 ~~~~~~~~~~~~ 1011 (1024)
T COG5307 1000 LGAIETLEEILW 1011 (1024)
T ss_pred hhhHHHHhhhhH
Confidence 888888887753
No 7
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=99.49 E-value=2.7e-14 Score=136.25 Aligned_cols=78 Identities=26% Similarity=0.480 Sum_probs=74.0
Q ss_pred hhhhHHHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCccCCChHHHHHHHhhhhhccchhHHHHHHHHHHHH
Q 000329 795 GDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFI 872 (1653)
Q Consensus 795 ~~~~~lq~~ll~pl~~L~~~~~~~dVr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~~~~~~~~~lv~~aF~~LqlI 872 (1653)
..++.||+.+|+||+.+|..+++.|||+++|+|+.++++++|++|++||++||++|+.++.+.++++|+.||+++++|
T Consensus 9 l~~~~fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~I 86 (86)
T PF09324_consen 9 LSNFNFQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQLI 86 (86)
T ss_pred ccccHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhhC
Confidence 345789999999999999999999999999999999999999999999999999999999988999999999999976
No 8
>KOG1846 consensus Uncharacterized conserved protein, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=1.3e-08 Score=124.44 Aligned_cols=430 Identities=16% Similarity=0.221 Sum_probs=264.4
Q ss_pred HHHHHHHHHhh-ccCCChHHHHHHHHHHHHhhHHhhcCCCCC------CCCC---CCCCCCCcchhHHHHHHHH---HHh
Q 000329 663 LSSLNSQLFES-SALMHISAVKSLLSALHQLSHQCMIGTSSS------FGPT---SSQKIGSISFSVERMISIL---VNN 729 (1653)
Q Consensus 663 l~~i~~~LFes-S~~l~~~al~~fv~ALc~lS~e~l~~~~~~------~~~~---~~~~~~~~~F~l~kL~ev~---~~N 729 (1653)
+.+-.+|+|+. +..|.--++..|.-++.+.|...+..+-.. ..|+ +.+ .......+.|+.+-. +..
T Consensus 846 LiakaDRffedacdeLcLmALgdfcvaiikaSenqlFhsvTaqkdihLaaPgevkstq-drksalhLfRigdaiirilrh 924 (1777)
T KOG1846|consen 846 LIAKADRFFEDACDELCLMALGDFCVAIIKASENQLFHSVTAQKDIHLAAPGEVKSTQ-DRKSALHLFRIGDAIIRILRH 924 (1777)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhHHHHHHHHhhhcceeeeeccceeeEeecCcccccch-hhHHHHHHHHHHHHHHHHHHh
Confidence 44445899996 568899999999999999997765432110 0011 111 111124555666622 112
Q ss_pred hhc----chhhHHHHHHHHHHH-hcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhcchhhhHHHHHH
Q 000329 730 LHR----VEPLWDQVVGHFLEL-ADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAV 804 (1653)
Q Consensus 730 ~~R----~~~iW~~l~~hli~v-~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~l 804 (1653)
..| ..-+|+.+..||+++ +|+....+...|+-++..++.+.|.. ..+.++ +.|...+
T Consensus 925 kaRPLlHqMfcwpLVaaHfVeasaCdkErhvSqiAaSaiadilTelLtd-----wnEpPg-------------fhFNeaL 986 (1777)
T KOG1846|consen 925 KARPLLHQMFCWPLVAAHFVEASACDKERHVSQIAASAIADILTELLTD-----WNEPPG-------------FHFNEAL 986 (1777)
T ss_pred cccchhHHHHHHhhhhHHHHhHHhhhhhhHHHHHHHHHHHHHHHHHHhc-----cCCCCC-------------cchhHhh
Confidence 224 367899999999999 67778888889999888888877632 223333 3455577
Q ss_pred hccHHHHhcc-CCcHHHHHHHHHHHHHHHHhcCCccCCChHHHHHHHhhhhhccch----hHH---------HHHHHHHH
Q 000329 805 ISPLRVLYFS-TQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEK----DLI---------TLGFQSLR 870 (1653)
Q Consensus 805 l~pl~~L~~~-~~~~dVr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~~~~~~~~----~lv---------~~aF~~Lq 870 (1653)
+.||+..++. +++.|++++.|..+.++++.+++.|.+||+.+|+-|.++...+.. .++ --+|+++.
T Consensus 987 fgPFeramclElCdEdtkdQflsSigeLVescadkIgSGWkPLFgaLeaVgggnksemkaaldedysmgKghacafDVfe 1066 (1777)
T KOG1846|consen 987 FGPFERAMCLELCDEDTKDQFLSSIGELVESCADKIGSGWKPLFGALEAVGGGNKSEMKAALDEDYSMGKGHACAFDVFE 1066 (1777)
T ss_pred hchHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhcCCcHHHHHHHHhcccccccccchhhHHHH
Confidence 8899877654 678899999999999999999999999999999999999753211 111 24677665
Q ss_pred HHHhccCCCCC--hhhHHHHHHHHHHHHhcCC-----------------CcchhHHHHHHHHHHHHHHHccc--CCCch-
Q 000329 871 FIMNDGLSSIP--TDCIHECVDVTGAYSSQKT-----------------ELNISLTAVGLLWTTTDFIAKGL--VHGIS- 928 (1653)
Q Consensus 871 lI~~dfL~~Lp--~~~~~~lV~~L~~F~~q~~-----------------dlNISLtAi~~lW~isD~L~~~~--~~~~~- 928 (1653)
--.+ ..++| .+....||-|+.+|.+.-. ..+..|.|+.++.+|+..+.+-. .++..
T Consensus 1067 afLn--iDnipVfanaalecimClmkflkgleevDckeigdcapapgapstdKOGaALdlLpncsqLiakiYkmPhkPif 1144 (1777)
T KOG1846|consen 1067 AFLN--IDNIPVFANAALECIMCLMKFLKGLEEVDCKEIGDCAPAPGAPSTDLCLAALDLLPNCSQLIAKIYKMPHKPIF 1144 (1777)
T ss_pred HHhc--cCchHhHHHHHHHHHHHHHHHHhcccccccchhcccCCCCCCCcchhhHHHHHHHHhHHHHHHHHHcCCCchhh
Confidence 3332 13344 3678899999999998643 23467899999999998776531 11100
Q ss_pred --------hhHhhhhcccCCCccccCcchhhhhhcccccc-cCCCCCcchhhhhHHHHHHHHHHhccCCcHHHHHHHHHH
Q 000329 929 --------EEKEAANQDLCSVPKQMDGEKREEKTLSNLDD-QNHSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRT 999 (1653)
Q Consensus 929 --------~~k~~~~~~~~s~~~~~~~~~~e~~~~~l~~~-~~~~~~~~~~~~LW~~LL~~L~~L~~D~R~EVRn~AIqT 999 (1653)
..|-... ..++....|.--..+|-. +.. .......+|+.++..+.....+.-|.-..--+..
T Consensus 1145 hlghladLprkcldq-------samdeDgIEsphgpfpvledfd--ddiagiElfiiflEQicaallncppnhQknlLDl 1215 (1777)
T KOG1846|consen 1145 HLGHLADLPRKCLDQ-------SAMDEDGIESPHGPFPVLEDFD--DDIAGIELFIIFLEQICAALLNCPPNHQKNLLDL 1215 (1777)
T ss_pred hhhhhhcchHHHHhh-------hhcccCCccCCCCCcccccccc--ccchhHHHHHHHHHHHHHHHhcCCcccCccHHHH
Confidence 0000000 000000001000001100 000 0112347999999888775566666667777888
Q ss_pred HHHHHHhcc-CCCCHHHHHHHHHHhHHHHHHhhhhhhccCCcccccccccCcCCCccchhhcccccchhhhhHH---HHH
Q 000329 1000 LFQTLGSHG-QKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNTAQKQWD---ETL 1075 (1653)
Q Consensus 1000 Lfril~~~G-~~ls~~~W~~~~~~VLFPLld~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ihhsr~t~~k~W~---ET~ 1075 (1653)
+|+.+..-. .-|.+.+=-.|+-.+++|.+.....-. +.+..-|+ .-.
T Consensus 1216 ifeLLrDiskkPlGadfGgvamsaliLPvmqkWiRRl-----------------------------dkdesywdmakaif 1266 (1777)
T KOG1846|consen 1216 IFELLRDISKKPLGADFGGVAMSALILPVMQKWIRRL-----------------------------DKDESYWDMAKAIF 1266 (1777)
T ss_pred HHHHHHHhccCCCCCCCccchhhHHHHHHHHHHHHHh-----------------------------chhhhhHHHHHHHH
Confidence 898887432 223333333678889999998775321 11113465 235
Q ss_pred HHHHHHHHHHHHhhhhhhcccCchHH--------HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhhcCCCCCChhhH
Q 000329 1076 VLVLGGIARLLRSFFPFLANLSNFWT--------GWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKGNLPVAYL 1147 (1653)
Q Consensus 1076 vlaL~gl~~lf~~~~~~L~~~~~F~~--------~W~~LL~~~~~~i~~~~~els~a~~~~L~~lL~~~~~~~~~~~~~~ 1147 (1653)
..++..-+.+...+.+.... +++.. +....++|...|....-..+..++.+|.+-+|...++++ +++.|
T Consensus 1267 KhaIGaccelVidhielekh-SswddRlerdIcalikdcfefdkaCaaaPaefiliagcsciryvlvtagpkF--seemW 1343 (1777)
T KOG1846|consen 1267 KHAIGACCELVIDHIELEKH-SSWDDRLERDICALIKDCFEFDKACAAAPAEFILIAGCSCIRYVLVTAGPKF--SEEMW 1343 (1777)
T ss_pred HHHHhHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHhhcchheeeeeccCccc--cHHHH
Confidence 66777778888777765443 22221 223333444445555556677788888887776655555 57778
Q ss_pred HHHHHHH
Q 000329 1148 NSVLDVY 1154 (1653)
Q Consensus 1148 ~~~~~~w 1154 (1653)
..+....
T Consensus 1344 niaccaL 1350 (1777)
T KOG1846|consen 1344 NIACCAL 1350 (1777)
T ss_pred HHHHHHH
Confidence 7655433
No 9
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=98.78 E-value=0.00033 Score=98.60 Aligned_cols=265 Identities=15% Similarity=0.146 Sum_probs=151.3
Q ss_pred HhHhHHHHHHhhhcchhhhhchhHHHHHhhcccccccCCCCCCcchHHHHHHHHHHHHHhhHhHhhhhcccccCChHHHH
Q 000329 1326 EKLIPVVVDLFLKAPAVEKCIIFPEIIQNLGRCMTTRRDNPDSSLWRLAVEGFNHILVDDVTKLAANFWQDMKISRPARL 1405 (1653)
Q Consensus 1326 ~~~~~~~~~l~~~~p~~~~~~~~~~i~~~l~~~~~~k~~~~~~~~Wk~a~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~ 1405 (1653)
-.++.-+++||.++=....+ .+++++.-|.-|+.-- ..++=|..++|+.+.+....+. ++ +
T Consensus 1437 ~~AL~~lvdLft~fFd~L~~-~L~~~l~ll~~ci~q~----n~~la~ig~~~l~~li~~ng~~----------F~----~ 1497 (1780)
T PLN03076 1437 TLALQLVVDLFVKFYPTVNP-LLKKVLMLLVSFIKRP----HQSLAGIGIAAFVRLMSNAGHL----------FS----D 1497 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCc----hHHHHHHHHHHHHHHHHHhhcc----------CC----H
Confidence 34455557777665333444 5588888888887754 7788888888888887766433 22 2
Q ss_pred HhHHHHHHHhhhhhcccCC-C-CCCC-CCCChhhccccch--------------------hh------chH-HHH-----
Q 000329 1406 RVWKEVADVYEIFLVGYCG-R-ALPS-NSLSAVALSGADE--------------------SL------EMS-ILD----- 1450 (1653)
Q Consensus 1406 ~~W~~v~~~~~~~l~~~~~-~-~~~~-~~~~~~~~~~~dE--------------------~~------d~~-~~~----- 1450 (1653)
.-|..|++.+....-...- . ..|. ...+.+...+.+. .+ -|. ++.
T Consensus 1498 ~~W~~i~~~~~~lf~~T~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~kc~~v~QLllI~ 1577 (1780)
T PLN03076 1498 EKWLEVVLSLKEAANATLPDFSYVVSGEYMPAENIQDSENAEAASSSTADNDAEAERSRRLYAAISDAKCRAAVQLLLIQ 1577 (1780)
T ss_pred HHHHHHHHHHHHHHHHhCCchhhcccccccccccccccccccccccccccchhhhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4499999998886544210 0 0000 0000000000000 00 010 111
Q ss_pred HhhhhccCCCCCCChHhhhhhHhhhhhcc---c-------------CCCCCCccccccCccchhhhHHH-HHHHHhhhhc
Q 000329 1451 ILGDKILKSPIDAPFDVLQRLISTIDRCA---S-------------RTCSLPVETVELMPAHCSKFSLA-CLHKLFSLSS 1513 (1653)
Q Consensus 1451 ~l~~~i~~~~~~~p~~~~~~l~~l~~~~~---~-------------r~~~~~~~t~~~~~~~r~r~a~~-c~d~Lf~l~s 1513 (1653)
.+.+..=-+...+|..-+.+|.++|..-- . |-|... +-.+|.-.+-|.=||. |+..||.+-.
T Consensus 1578 ~~~~l~~~~~~~l~~~~l~~l~~~L~~s~~fA~~fN~d~~lR~~l~~~g~~~-~~~~PnLLkqE~~s~~~~l~il~~~~~ 1656 (1780)
T PLN03076 1578 AVMEIYNMYRPRLSAKNTLVLFDALHTVASHAHKINSDTALRSKLQELGSMT-QMQDPPLLRLENESYQICLTFLQNLIL 1656 (1780)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhhhcc-cCCCCchhhHhHHHHHHHHHHHHHHhc
Confidence 11111001245677777767766664211 0 222110 0112444445667777 7899999887
Q ss_pred CCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccc------------ccCCCCCChhHHHH-------HHHHHHHH
Q 000329 1514 SDNEASKWNLTRAEVSKISITVLMGRCEYILNRFLIDEN------------DLGERNFPAARLEE-------IIFILQEL 1574 (1653)
Q Consensus 1514 ~~~~~~~~~~~~~~~a~~~~p~Ll~Rc~~~L~~yi~D~~------------l~G~~P~P~~r~~E-------l~~vL~~l 1574 (1653)
..+.. ..+.. +--.|+.=|+.+|+.|+.=.. -+=.+|+-..+++| +..||+++
T Consensus 1657 d~~~~----~~~~~----~~~~l~~~c~~il~~y~~l~~~~~~~~~~~~~~~~~~~p~~~~~~r~i~a~~pv~v~il~~~ 1728 (1780)
T PLN03076 1657 DKPPL----AKEAE----VESRLVELCEEVLQFYIETSTAGQDSEDSSSQQPRWLIPLGSGKRRELAARAPLVVATLQAV 1728 (1780)
T ss_pred CCCcc----chHHH----HHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccchhHHHHHhcchHHHHHHHHH
Confidence 43211 12222 445688889999999964221 01134555667777 55677777
Q ss_pred hhcccCcccccCCCCCcccccccccCcCCCcccchhhhhhhhhhheec--chhHHHHHHHHHHH-HHhhh
Q 000329 1575 ARLKIHPDTASALPLHPVLKSGLAMDENSDKRPHLLVLFPSFCELVIS--REARVRELVQVLLR-LITKE 1641 (1653)
Q Consensus 1575 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hL~~lyp~l~~~~~~--~~~~v~~ll~~~l~-~vg~e 1641 (1653)
.+|- +.+.++|+-.+||++|+++.+ ...+|+.+|+.+|. .||-.
T Consensus 1729 ~~l~-----------------------~~~f~~~~~~~y~l~~~l~~~e~~~~e~r~~l~~~~~~rvg~~ 1775 (1780)
T PLN03076 1729 CGLG-----------------------DSSFEKNLVRFFPLLAGLISCEHGSNEVQVALSDMLSSWVGPV 1775 (1780)
T ss_pred hcCC-----------------------HHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhhh
Confidence 5432 244799999999999999965 45899999999999 78863
No 10
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=1.7e-06 Score=112.79 Aligned_cols=470 Identities=16% Similarity=0.123 Sum_probs=289.9
Q ss_pred CchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhhcCCC----------C-------------------------
Q 000329 1097 SNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKG----------N------------------------- 1141 (1653)
Q Consensus 1097 ~~F~~~W~~LL~~~~~~i~~~~~els~a~~~~L~~lL~~~~~~~----------~------------------------- 1141 (1653)
.+|.++|..-|+.+..-...++.+|..||-++++.+........ +
T Consensus 9 ~sl~~aL~adLrsLsseArkKnn~VK~aAdkSi~~Lr~isS~s~ds~vlet~~edf~~PfllaC~sr~tRl~~ials~iQ 88 (1610)
T KOG1848|consen 9 MSLVRALLADLRSLSSEARKKNNEVKLAADKSIQELRQISSASRDSDVLETPNEDFLVPFLLACISRNTRLFVIALSCIQ 88 (1610)
T ss_pred HHHHHHHHHHHHHhhHHHHhhchHHHHHHHhHHHHHHhhccccccccccccCCcccccceeeecccCcccceeeHHHHHH
Confidence 34667899999999998999999999999999988765432110 0
Q ss_pred -------CC---------hhhHHHHHHHHHHhhcCCCCCCC-------CCCcchhHHHHHHHHHHHHHHHhhCC--HHHH
Q 000329 1142 -------LP---------VAYLNSVLDVYEYALQKSPNYSD-------NAAGKVKQEILHGLGELYVQAQKMFD--DRMY 1196 (1653)
Q Consensus 1142 -------~~---------~~~~~~~~~~w~~~~~~~~~~~~-------~~~~~~~q~~l~~f~~ly~~~~~~~~--~~~~ 1196 (1653)
++ ...|..+|.-|.++--..+.|-- ...+.+..-++.||+-+|++.+..++ ...+
T Consensus 89 kL~~~dsleps~~aeildn~L~a~~qae~~QLrvLQtiPii~~syl~fi~~p~l~kll~iCfnLl~~knkvV~NaAaAtl 168 (1610)
T KOG1848|consen 89 KLGRHDSLEPSVTAEILDNNLWAAAQAEWIQLRVLQTIPIIFFSYLTFITGPPLLKLLIICFNLLYQKNKVVFNAAAATL 168 (1610)
T ss_pred HHhccCCCCCcccHHHHHHHHHHHHHHHHHHHhhhccccceeeeceeeccCcHHHHHHHHHHHHHcCCCcceechhHHHH
Confidence 11 24566677777644221111110 01223445567799999996555554 3555
Q ss_pred HHHHHHHHHHHHcccCCCCCCccccC-----CCCHHHHHHHHhccccCCC-----ccchhhHHHHHHHHHccCCCCCCCC
Q 000329 1197 GQLLAIIDLAVRQTMITHDNYEIEFG-----HVPPVLRTILEILPLLSPT-----EQLCSMWLVLLREILQYLPRSDSPL 1266 (1653)
Q Consensus 1197 ~~~l~~l~~~~~~~~~~~~~~~~d~~-----~~s~lQ~~vl~~l~~i~~~-----~~~~~~~~~~~~~l~~f~~~~~~~~ 1266 (1653)
+|+. +..|-+.|+. .+.++...+ +.++.|.+.+..+.-+..+ ..++.|+|....+.|.|++..+.++
T Consensus 169 rQlV--~~vFdrv~ie-s~~~d~~l~sl~~~s~t~sl~aa~~~~~~l~~dI~~~~~~i~l~~~~~~~~~L~~Iee~~~s~ 245 (1610)
T KOG1848|consen 169 RQLV--LLVFDRVPIE-SDAFDFILPSLTEASGTSSLEAALTALDPLQKDICVGFENIQLMYPAIFDQLLAFIEESTKSP 245 (1610)
T ss_pred HHHH--HHHHHhcccc-cccccccchhhhccCCccchhhcccccchHHHhHhcchHHHHHhcccccHhHHhcchhccccc
Confidence 5543 3344444432 222222222 2444444444433322221 1356677788888888886655443
Q ss_pred CCCCCCCCCCCCCCccccccc--ccccCCCCCCCCCCcchhhhhhhccCCcccccchHH-HHHhHhHHHHHHhhh---cc
Q 000329 1267 QKKEDEEEPPSTSDNIHDVHV--RTKYDKPNGTAPTTPKDASALSESSGSVTAAIPNHL-FAEKLIPVVVDLFLK---AP 1340 (1653)
Q Consensus 1267 ~~~~~~~~~~~t~~~~~~~~~--~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~---~p 1340 (1653)
...- +...+. +.++.-++.+.. .+++ ...++ |.+.+....|+++.. .+
T Consensus 246 ~~el-----------Lesilks~~s~~dq~qdf~~--a~ll-------------~~~~~Py~~Rl~~~sv~~i~~l~~~e 299 (1610)
T KOG1848|consen 246 GLEL-----------LESILKSNASKSDQIQDFAP--AELL-------------ALNVVPYAERLLLRSVDLIQKLACHE 299 (1610)
T ss_pred hhhh-----------hhhhhhcchhhhHHHHHhhH--HHHH-------------HhhhHHHHHHHHHHHHHHHHHHhccH
Confidence 2211 111110 000000000000 0000 01122 666666666664444 46
Q ss_pred hhhhhchhHHHHHhhcc-------cccccCCCCCCcchHHHHHHHHHHHHHhhHhHhhhhcccccCChHHHHHhHHHHHH
Q 000329 1341 AVEKCIIFPEIIQNLGR-------CMTTRRDNPDSSLWRLAVEGFNHILVDDVTKLAANFWQDMKISRPARLRVWKEVAD 1413 (1653)
Q Consensus 1341 ~~~~~~~~~~i~~~l~~-------~~~~k~~~~~~~~Wk~a~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~W~~v~~ 1413 (1653)
.+.+.+.+-.+|+.+.. |-..+|.|+....|+++....+.+...++|....-.. --.+..+|.+..-
T Consensus 300 a~~~~ev~lnvi~slisn~~ll~~~~~~s~~~~kdlv~~l~~~v~l~~~~i~v~~~v~la~------~lk~~s~~~~~~p 373 (1610)
T KOG1848|consen 300 AVVNEEVLLNVIKSLISNTNLLFDPESLSYPCSKDLVWKLAVSVLLYVLSIGVPVAVFLAS------LLKFDSMDLELWP 373 (1610)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchhhccccccHHHHhHHhHHHheeecccCcchhhhHHH------HhhhhhcCcccCc
Confidence 66666666677776666 9999999999999999999999999999987554331 1346778888888
Q ss_pred HhhhhhcccCCCCCCCCCCChhhccccchhhchHHHHHhhhhccCCCCCCChHhhh----hhHhhhhhcccCCCCCCccc
Q 000329 1414 VYEIFLVGYCGRALPSNSLSAVALSGADESLEMSILDILGDKILKSPIDAPFDVLQ----RLISTIDRCASRTCSLPVET 1489 (1653)
Q Consensus 1414 ~~~~~l~~~~~~~~~~~~~~~~~~~~~dE~~d~~~~~~l~~~i~~~~~~~p~~~~~----~l~~l~~~~~~r~~~~~~~t 1489 (1653)
.+..|++... .++.+.++-.+. +.+.++....+.+-.+++|...-++..++. .+...++.++.--|......
T Consensus 374 ~~l~~~~~~s---iv~k~dsi~~~t-rn~diktk~thlldk~~~plan~vy~~lv~ti~nsi~e~l~k~s~esg~~eFt~ 449 (1610)
T KOG1848|consen 374 RFLDFLFLKS---IVPKNDSIQIFT-RNFDIKTKVTHLLDKEILPLANFVYKELVGTISNSIQEMLNKSSIESGGSEFTS 449 (1610)
T ss_pred cHhHHHhhcc---CCCCchhhHHHH-hhcccCcchHHHHhhcccccchhHHHHHHHhhhHHHHHHHHHhHHhhcCccchh
Confidence 8888888863 233555555666 666777889999999999988888877665 55666666554333221111
Q ss_pred cccCccchhhhHHHHHHHHhhhhcCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCChhHHHHHHH
Q 000329 1490 VELMPAHCSKFSLACLHKLFSLSSSDNEASKWNLTRAEVSKISITVLMGRCEYILNRFLIDENDLGERNFPAARLEEIIF 1569 (1653)
Q Consensus 1490 ~~~~~~~r~r~a~~c~d~Lf~l~s~~~~~~~~~~~~~~~a~~~~p~Ll~Rc~~~L~~yi~D~~l~G~~P~P~~r~~El~~ 1569 (1653)
-+.--..|+.+...|+..|-++..... ...++.-...+++...+..|.+.+.+.|..|+.+.|++|.|+...-|+++
T Consensus 450 k~k~Ie~~~dnds~stavl~~l~~~~~---~li~e~~~ss~~avSt~~~~a~~v~~l~~~~~~~s~k~~l~~~~kLe~i~ 526 (1610)
T KOG1848|consen 450 KEKGIELREDNDSMSTAVLLQLSFSNK---VLIPEGLYSSRMAVSTLLKRAQDVLHLYIEDEVLSNKCPLPRQTKLEIIF 526 (1610)
T ss_pred hhcCceeeccCchHHHHHHHHHHhhhh---hhccccchhhhHHHHHHHHHHHHHHHHhhhhhhhccCCccccceeehhHH
Confidence 111122257788888888876665321 22345556788999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCcccccCCCCCcccccccccCcCCCcccchhhhhhhhhh
Q 000329 1570 ILQELARLKIHPDTASALPLHPVLKSGLAMDENSDKRPHLLVLFPSFCE 1618 (1653)
Q Consensus 1570 vL~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hL~~lyp~l~~ 1618 (1653)
+- .+..++.-. ..+++..+...+...+.+++-.||.+..
T Consensus 527 ~a----~~snq~til------dalks~l~~st~e~is~qvl~s~stlts 565 (1610)
T KOG1848|consen 527 DA----VLSNQSTIL------DALKSTLPESTDEIISAQVLASYSTLTS 565 (1610)
T ss_pred HH----HhhccccHH------HHhhhhccccccchhhHHHHhchHHHHh
Confidence 65 333333211 1123333345667789999999999984
No 11
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=0.00034 Score=77.60 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=27.6
Q ss_pred CcchhhhHHHHHHHHHH------------------HHHHHHhhccccccc
Q 000329 440 VASEAHSITLAIEGLLG------------------VVFTVATLTDEAVDV 471 (1653)
Q Consensus 440 l~~Ea~~I~~~~e~~a~------------------~i~sv~~L~~~~~~~ 471 (1653)
+|||+|+|+|+||.||. ++|++||+||...|.
T Consensus 153 LPGEaQKIdRmmEaFA~rYclcNPgvfqstDtcyvlsfs~IMlNTsLHNp 202 (395)
T KOG0930|consen 153 LPGEAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYVLSFAIIMLNTSLHNP 202 (395)
T ss_pred CCchHHHHHHHHHHHHHHHhccCCcccccCceeeeeeehhhhhcccccCC
Confidence 89999999999999997 468999999975443
No 12
>KOG0931 consensus Predicted guanine nucleotide exchange factor, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.89 E-value=0.017 Score=68.54 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=25.9
Q ss_pred cCcchhhhHHHHHHHHHH---------------------HHHHHHhhccc
Q 000329 439 LVASEAHSITLAIEGLLG---------------------VVFTVATLTDE 467 (1653)
Q Consensus 439 ll~~Ea~~I~~~~e~~a~---------------------~i~sv~~L~~~ 467 (1653)
.++||||+|+|++|.|+. ++|+|||||||
T Consensus 289 rvqgEAqKveRlIeAFsqrYc~cNP~~v~qfrnpDTIfiLaFAIIlLNTD 338 (627)
T KOG0931|consen 289 RVQGEAQKVERLIEAFSQRYCKCNPKVVRQFRNPDTIFILAFAIILLNTD 338 (627)
T ss_pred ecccHHHHHHHHHHHHHHHHhccCHHHHhhccCCCeehHHHHHHHHhccc
Confidence 389999999999999985 46799999998
No 13
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=93.52 E-value=31 Score=44.61 Aligned_cols=146 Identities=15% Similarity=0.178 Sum_probs=101.9
Q ss_pred cchhHHHHHHHHHHhhhc-chhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhc
Q 000329 715 ISFSVERMISILVNNLHR-VEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESR 793 (1653)
Q Consensus 715 ~~F~l~kL~ev~~~N~~R-~~~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~ 793 (1653)
..+.+.|++-++...+.. .....-.+++++..=..|+|+.+|..|+..|..+....+
T Consensus 54 ~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~---------------------- 111 (526)
T PF01602_consen 54 KDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRTPEM---------------------- 111 (526)
T ss_dssp SSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHH----------------------
T ss_pred CCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccch----------------------
Confidence 367888999888776664 677889999999998999999999999999998653221
Q ss_pred chhhhHHHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCccCCChHHHHHHHhhhhhccchhHHHHHHHHHHHH-
Q 000329 794 HGDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFI- 872 (1653)
Q Consensus 794 ~~~~~~lq~~ll~pl~~L~~~~~~~dVr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~~~~~~~~~lv~~aF~~LqlI- 872 (1653)
.+ .+..++..+. .+.++.||+..+-|+.++.+.+.+.+..+| +..+.....+.++.++..|...+.-|
T Consensus 112 ------~~-~l~~~v~~ll-~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~---~~~l~~lL~d~~~~V~~~a~~~l~~i~ 180 (526)
T PF01602_consen 112 ------AE-PLIPDVIKLL-SDPSPYVRKKAALALLKIYRKDPDLVEDEL---IPKLKQLLSDKDPSVVSAALSLLSEIK 180 (526)
T ss_dssp ------HH-HHHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHCHCCHHGGH---HHHHHHHTTHSSHHHHHHHHHHHHHHH
T ss_pred ------hh-HHHHHHHHHh-cCCchHHHHHHHHHHHHHhccCHHHHHHHH---HHHHhhhccCCcchhHHHHHHHHHHHc
Confidence 11 2334445553 356789999999999999999888776554 44454444566778888888888877
Q ss_pred HhccCCCCChhhHHHHHHHHHHHH
Q 000329 873 MNDGLSSIPTDCIHECVDVTGAYS 896 (1653)
Q Consensus 873 ~~dfL~~Lp~~~~~~lV~~L~~F~ 896 (1653)
.++-... +.+..++..|.+..
T Consensus 181 ~~~~~~~---~~~~~~~~~L~~~l 201 (526)
T PF01602_consen 181 CNDDSYK---SLIPKLIRILCQLL 201 (526)
T ss_dssp CTHHHHT---THHHHHHHHHHHHH
T ss_pred cCcchhh---hhHHHHHHHhhhcc
Confidence 3322100 33455555555554
No 14
>PTZ00429 beta-adaptin; Provisional
Probab=84.24 E-value=1.7e+02 Score=39.65 Aligned_cols=139 Identities=12% Similarity=0.079 Sum_probs=66.9
Q ss_pred hcChhHHHHHHHHHHHHhCCCCCCcccCchhHHHHHHHHhcCCCchhHHHHHHHHHHHHhcCC----CCcchHHHHHHHH
Q 000329 20 RRYPAVKDGAEHAILKLRSLSSPSELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDA----VAPSALKEIFSML 95 (1653)
Q Consensus 20 RK~~~lk~A~e~al~~Lk~~~~~~~~~~~~~~l~PfllaC~skn~kl~~iaL~~lqkLi~~~~----i~~~~l~~Il~~l 95 (1653)
-++|-||.+|=-++.+|=... .++.....++.=+.-....+++-++.-|+..|..+-..+- +....+..+++.|
T Consensus 151 D~~pYVRKtAalai~Kly~~~--pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L 228 (746)
T PTZ00429 151 DPDPYVRKTAAMGLGKLFHDD--MQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHL 228 (746)
T ss_pred CCCHHHHHHHHHHHHHHHhhC--cccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHh
Confidence 356777766666665553221 1222222222222222346677777777777777754431 1122334444455
Q ss_pred HcccCCCCchHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHhhhcccCChHHHHHHHHHHH-------HHHHHHHHHh
Q 000329 96 KNHADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQALGICLRLLENNRSSDSVRNTAAATF-------RQAVALIFDH 168 (1653)
Q Consensus 96 ~~~~~~~~e~vqLKILQ~L~~l~~s~~~~~~g~~L~~~L~~C~~L~~~sk~~~vv~~TA~ATL-------~Qlv~~VF~r 168 (1653)
.+| +|--|+.||++|.. |. +-..+.....+.......+ +.|+.||-.++.+-+ .+++..++.|
T Consensus 229 ~e~----~EW~Qi~IL~lL~~----y~-P~~~~e~~~il~~l~~~Lq-~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~r 298 (746)
T PTZ00429 229 PEC----NEWGQLYILELLAA----QR-PSDKESAETLLTRVLPRMS-HQNPAVVMGAIKVVANLASRCSQELIERCTVR 298 (746)
T ss_pred hcC----ChHHHHHHHHHHHh----cC-CCCcHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 444 34568888888843 21 1122223344444433323 234536666666533 2444455555
Q ss_pred hh
Q 000329 169 VV 170 (1653)
Q Consensus 169 v~ 170 (1653)
+.
T Consensus 299 l~ 300 (746)
T PTZ00429 299 VN 300 (746)
T ss_pred HH
Confidence 53
No 15
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=84.17 E-value=0.81 Score=50.85 Aligned_cols=32 Identities=16% Similarity=0.304 Sum_probs=27.7
Q ss_pred cCcchhhhHHHHHHHHHH-------------------HHHHHHhhcccccc
Q 000329 439 LVASEAHSITLAIEGLLG-------------------VVFTVATLTDEAVD 470 (1653)
Q Consensus 439 ll~~Ea~~I~~~~e~~a~-------------------~i~sv~~L~~~~~~ 470 (1653)
.+|||+|.|+|++|.|++ ++|+++||||+..+
T Consensus 93 ~lpgE~Q~Idrile~Fs~~y~~~Np~~~~~~~d~v~~l~~sllmLnTdlHn 143 (185)
T cd00171 93 RLPGEAQKIDRLLEKFSERYCECNPGIFSSSADAAYTLAYSIIMLNTDLHN 143 (185)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHCCCCCCCChhHHHHHHHHHHHHhHHhcC
Confidence 489999999999999996 46799999998644
No 16
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.80 E-value=1.7e+02 Score=38.30 Aligned_cols=157 Identities=15% Similarity=0.180 Sum_probs=103.8
Q ss_pred HHHHHHHHHhhHHhhcCCCCCCCCCCCCCCCCcchhHHHHHHHHHHhhhc--chhhHHHHHHHHHHHhcCCChhHHHHHH
Q 000329 683 KSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSISFSVERMISILVNNLHR--VEPLWDQVVGHFLELADNSNQHLRNIAL 760 (1653)
Q Consensus 683 ~~fv~ALc~lS~e~l~~~~~~~~~~~~~~~~~~~F~l~kL~ev~~~N~~R--~~~iW~~l~~hli~v~~~~n~~lr~~Av 760 (1653)
-+++.+||++-..+ .. +..++ ..=+|+|+.|=.-.-+++ .+.--+.+...|++...|+++.+|..|+
T Consensus 127 pelLp~L~~~L~s~----d~------n~~Eg-A~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~ 195 (885)
T KOG2023|consen 127 PELLPQLCELLDSP----DY------NTCEG-AFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAV 195 (885)
T ss_pred hhHHHHHHHHhcCC----cc------cccch-hHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHH
Confidence 56777788764321 10 00122 234788888855444554 2455668889999999999999999999
Q ss_pred HHHHHHHHHHhccccccccccccCCCChhhhhcchhhhHHHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCccC
Q 000329 761 DALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLH 840 (1653)
Q Consensus 761 d~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~dVr~~iL~~L~~iL~~~g~~L~ 840 (1653)
.+++|.+.. .. ......+. .|+.-+-.+ .+..+.+||+.+=..+-.+++-+.+.+.
T Consensus 196 ~cvNq~i~~--~~--------------------qal~~~iD-~Fle~lFal-anD~~~eVRk~vC~alv~Llevr~dkl~ 251 (885)
T KOG2023|consen 196 GCVNQFIII--QT--------------------QALYVHID-KFLEILFAL-ANDEDPEVRKNVCRALVFLLEVRPDKLV 251 (885)
T ss_pred hhhhheeec--Cc--------------------HHHHHHHH-HHHHHHHHH-ccCCCHHHHHHHHHHHHHHHHhcHHhcc
Confidence 999997651 00 01111222 123222233 4677889999999999999999999999
Q ss_pred CChHHHHHHHhhhhhccchhHHHHHHHHHHHHHh
Q 000329 841 YSWPSILELLRSVADASEKDLITLGFQSLRFIMN 874 (1653)
Q Consensus 841 sgW~~If~IL~~~~~~~~~~lv~~aF~~LqlI~~ 874 (1653)
..-+.|.+-+-....+.++++.-.|.+-.--++.
T Consensus 252 phl~~IveyML~~tqd~dE~VALEACEFwla~ae 285 (885)
T KOG2023|consen 252 PHLDNIVEYMLQRTQDVDENVALEACEFWLALAE 285 (885)
T ss_pred cchHHHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence 8888888666555555666666666666555554
No 17
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=80.36 E-value=82 Score=35.88 Aligned_cols=175 Identities=14% Similarity=0.184 Sum_probs=103.7
Q ss_pred hHHHHHHHHHHh--hhcchhhHHHHH---HHHHHHhcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhh
Q 000329 718 SVERMISILVNN--LHRVEPLWDQVV---GHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVES 792 (1653)
Q Consensus 718 ~l~kL~ev~~~N--~~R~~~iW~~l~---~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~ 792 (1653)
.+++|..++..| ......+++.+. .-+.....+.+..|...|...+..++... +. .
T Consensus 27 al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l-~~-~----------------- 87 (228)
T PF12348_consen 27 ALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQL-GS-H----------------- 87 (228)
T ss_dssp HHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHH-GG-G-----------------
T ss_pred HHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hH-h-----------------
Confidence 566777777776 233566666666 33334444457888899999999887632 11 0
Q ss_pred cchhhhHHHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCccCCChHHHHHHHhhhhhccchhHHHHHHHHHHHH
Q 000329 793 RHGDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFI 872 (1653)
Q Consensus 793 ~~~~~~~lq~~ll~pl~~L~~~~~~~dVr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~~~~~~~~~lv~~aF~~LqlI 872 (1653)
+..+-..++.++.... .....-|++..-+||..|++.++ .+=++++.++......+++.+-..+.+.+..+
T Consensus 88 ----~~~~~~~~l~~Ll~~~-~~~~~~i~~~a~~~L~~i~~~~~----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~ 158 (228)
T PF12348_consen 88 ----FEPYADILLPPLLKKL-GDSKKFIREAANNALDAIIESCS----YSPKILLEILSQGLKSKNPQVREECAEWLAII 158 (228)
T ss_dssp ----GHHHHHHHHHHHHHGG-G---HHHHHHHHHHHHHHHTTS-----H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHH-ccccHHHHHHHHHHHHHHHHHCC----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 1122223444555543 34466899999999999998765 11145588888877777777777888888888
Q ss_pred HhccC---CCCCh-hhHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHc
Q 000329 873 MNDGL---SSIPT-DCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAK 921 (1653)
Q Consensus 873 ~~dfL---~~Lp~-~~~~~lV~~L~~F~~q~~dlNISLtAi~~lW~isD~L~~ 921 (1653)
+..+- ..+.. ..+..++.++.++..- .+..+--.|-..||.+......
T Consensus 159 l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D-~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 159 LEKWGSDSSVLQKSAFLKQLVKALVKLLSD-ADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HTT-----GGG--HHHHHHHHHHHHHHHTS-S-HHHHHHHHHHHHHHHHHH-H
T ss_pred HHHccchHhhhcccchHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHCCH
Confidence 87665 22322 2367888888888764 3677777788999988666654
No 18
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=80.18 E-value=1.4 Score=49.06 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=27.9
Q ss_pred cCcchhhhHHHHHHHHHH--------------------HHHHHHhhccccccc
Q 000329 439 LVASEAHSITLAIEGLLG--------------------VVFTVATLTDEAVDV 471 (1653)
Q Consensus 439 ll~~Ea~~I~~~~e~~a~--------------------~i~sv~~L~~~~~~~ 471 (1653)
.+|||+|.|+|++|.|+. ++|+++||||+..+.
T Consensus 94 ~lpgE~q~Idrile~Fs~~y~~~N~~~~~~~~~d~~y~l~~s~lmLnTdlhn~ 146 (187)
T smart00222 94 RLPGEAQKIDRLLEAFSSRYCECNPSVFSKLNADAAYTLAYSLIMLNTDLHNP 146 (187)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHCCCccCCCChhHHHHHHHHHHHHhHHhcCC
Confidence 489999999999999996 467999999985443
No 19
>PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ]. The 3D structure of the domain displays several alpha-helices []. It was found to be associated with other domains involved in guanine nucleotide exchange (e.g., CDC25, Dbl) in mammalian factors [].; GO: 0005086 ARF guanyl-nucleotide exchange factor activity, 0032012 regulation of ARF protein signal transduction, 0005622 intracellular; PDB: 3SWV_A 3L8N_A 2R09_A 2R0D_B 1RE0_B 3LTL_A 1KU1_A 1XSZ_A 1XT0_B 1R8Q_E ....
Probab=79.24 E-value=1.4 Score=49.25 Aligned_cols=33 Identities=12% Similarity=0.290 Sum_probs=27.2
Q ss_pred ccCcchhhhHHHHHHHHHH--------------------HHHHHHhhcccccc
Q 000329 438 VLVASEAHSITLAIEGLLG--------------------VVFTVATLTDEAVD 470 (1653)
Q Consensus 438 ~ll~~Ea~~I~~~~e~~a~--------------------~i~sv~~L~~~~~~ 470 (1653)
..+|||+|.|+|+++.|+. ++|+++||||+..+
T Consensus 96 f~LpgE~q~idril~~Fs~~y~~~Np~~~~~~~~d~v~~l~~slimLnTdlHn 148 (190)
T PF01369_consen 96 FRLPGESQQIDRILEAFSERYYECNPNSTPFKSPDTVYILAYSLIMLNTDLHN 148 (190)
T ss_dssp S-BTSSHHHHHHHHHHHHHHHHHHTTTGCSSSSHHHHHHHHHHHHHHHHHHH-
T ss_pred eeeccchHHHHHHHHHHHHHHHHhCCcccccccHhHHHHHHHHHHHHhHHHHh
Confidence 3489999999999999986 46799999998543
No 20
>PTZ00429 beta-adaptin; Provisional
Probab=77.93 E-value=2.7e+02 Score=37.84 Aligned_cols=62 Identities=15% Similarity=0.094 Sum_probs=44.8
Q ss_pred HHHHHHhhcChhHHHHHHHHHHHHhCCCCCCcccCchhHHHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 000329 13 ALSAEARRRYPAVKDGAEHAILKLRSLSSPSELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISH 80 (1653)
Q Consensus 13 ~L~~EskRK~~~lk~A~e~al~~Lk~~~~~~~~~~~~~~l~PfllaC~skn~kl~~iaL~~lqkLi~~ 80 (1653)
+|....+-+||-+|-.|=+++..++.- .-.+.++.|+.-++..+++.+-..|.-|+.|+...
T Consensus 109 tl~KDl~d~Np~IRaLALRtLs~Ir~~------~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~ 170 (746)
T PTZ00429 109 TFLQDTTNSSPVVRALAVRTMMCIRVS------SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHD 170 (746)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHcCCcH------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Confidence 344556667778888777777766542 11345667777888889999999999999998754
No 21
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=73.43 E-value=2.3e+02 Score=36.55 Aligned_cols=100 Identities=12% Similarity=0.158 Sum_probs=66.4
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHcccCCCCchHHHHHHHHHHHHHcCCCCCCChHHH
Q 000329 51 ILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAPSALKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLHPENEDNM 130 (1653)
Q Consensus 51 ~l~PfllaC~skn~kl~~iaL~~lqkLi~~~~i~~~~l~~Il~~l~~~~~~~~e~vqLKILQ~L~~l~~s~~~~~~g~~L 130 (1653)
....+.--+.++|+.+.+.||.+|-++. .++.++.++..+..+..-....|.=+-+-++..++..+...+...
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~-----~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~-- 152 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIR-----TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE-- 152 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH------SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG--
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhc-----ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH--
Confidence 5566667788889999999999998877 445555566666555333344788888888888887643333222
Q ss_pred HHHHHHHHhhhcccCChHHHHHHHHHHHHHH
Q 000329 131 AQALGICLRLLENNRSSDSVRNTAAATFRQA 161 (1653)
Q Consensus 131 ~~~L~~C~~L~~~sk~~~vv~~TA~ATL~Ql 161 (1653)
.+..+.++. ..+++ .|...|-..+.++
T Consensus 153 --~~~~l~~lL-~d~~~-~V~~~a~~~l~~i 179 (526)
T PF01602_consen 153 --LIPKLKQLL-SDKDP-SVVSAALSLLSEI 179 (526)
T ss_dssp --HHHHHHHHT-THSSH-HHHHHHHHHHHHH
T ss_pred --HHHHHhhhc-cCCcc-hhHHHHHHHHHHH
Confidence 355555553 44566 7777777777777
No 22
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=70.87 E-value=7.4 Score=29.74 Aligned_cols=28 Identities=32% Similarity=0.364 Sum_probs=21.9
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHHHHH
Q 000329 978 FSLLKKLGADERPEVRNSAIRTLFQTLG 1005 (1653)
Q Consensus 978 L~~L~~L~~D~R~EVRn~AIqTLfril~ 1005 (1653)
+-.+.++..|+-++||..|+++|-++..
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 3445677889999999999999987764
No 23
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.58 E-value=4.4e+02 Score=36.82 Aligned_cols=247 Identities=16% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHhhhcchhhHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhcchhhhHHHHHH
Q 000329 726 LVNNLHRVEPLWDQVVGHFLELADNS-NQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAV 804 (1653)
Q Consensus 726 ~~~N~~R~~~iW~~l~~hli~v~~~~-n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~l 804 (1653)
++.|..|-.. +..-|..+..+. ++.+|..|+.-+|+++.+.- ......-|..+
T Consensus 27 ~l~~~~~~~~----~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w----------------------~~l~~e~~~si 80 (1075)
T KOG2171|consen 27 ALETLAKTEP----LLPALAHILATSADPQVRQLAAVLLRKLLTKHW----------------------SRLSAEVQQSI 80 (1075)
T ss_pred HHHHhhcccc----hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHh----------------------hcCCHHHHHHH
Q ss_pred hccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCccCCChHHHHHHHhhhhhccchhHHHHHHHHHHHHHhccCCCCChhh
Q 000329 805 ISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDC 884 (1653)
Q Consensus 805 l~pl~~L~~~~~~~dVr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~~~~~~~~~lv~~aF~~LqlI~~dfL~~Lp~~~ 884 (1653)
.+.+.....+.+..-||..+-+.+..|-.+-..- +|+-++..|-.+....++.+=..||-.|.-+...|=..+.+-
T Consensus 81 ks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e---~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~- 156 (1075)
T KOG2171|consen 81 KSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE---KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPH- 156 (1075)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchh-
Q ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHcccCCCchhhHhhhhcccCCCccccCcchhhhhhcccccccCCC
Q 000329 885 IHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHS 964 (1653)
Q Consensus 885 ~~~lV~~L~~F~~q~~dlNISLtAi~~lW~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~l~~~~~~~ 964 (1653)
+.++...+.+=..-..+. |-.+|+.-+-..+-++-.+ +..
T Consensus 157 ~~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~---~~~------------------------------------ 196 (1075)
T KOG2171|consen 157 LDDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENN---KSE------------------------------------ 196 (1075)
T ss_pred HHHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccc---hHH------------------------------------
Q ss_pred CCcchhhhhHHH-HHHHHHHhccCCcHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHhhhhhhccCCcccc
Q 000329 965 IGMVDRDKLLFA-VFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEW 1043 (1653)
Q Consensus 965 ~~~~~~~~LW~~-LL~~L~~L~~D~R~EVRn~AIqTLfril~~~G~~ls~~~W~~~~~~VLFPLld~l~~~~~~~~~~~~ 1043 (1653)
....+-.+| ++..+.++..+.....-.+++..|-.++.+-+..|.+ .+.+|+==.+.-...
T Consensus 197 ---~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~-----~l~~ii~~~l~Ia~n---------- 258 (1075)
T KOG2171|consen 197 ---VDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRP-----HLSQIIQFSLEIAKN---------- 258 (1075)
T ss_pred ---HHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHH-----HHHHHHHHHHHHhhc----------
Q ss_pred cccccCcCCCccchhhcccccchhhhhHH-HHHHHHHHHHHHH
Q 000329 1044 QGKELGTRGGKAVHMLIHHSRNTAQKQWD-ETLVLVLGGIARL 1085 (1653)
Q Consensus 1044 ~~~~~~~~~~~~~~~~ihhsr~t~~k~W~-ET~vlaL~gl~~l 1085 (1653)
|+-+ .++..||.-++.+
T Consensus 259 -------------------------~~l~~~~R~~ALe~ivs~ 276 (1075)
T KOG2171|consen 259 -------------------------KELENSIRHLALEFLVSL 276 (1075)
T ss_pred -------------------------ccccHHHHHHHHHHHHHH
No 24
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=65.65 E-value=85 Score=37.02 Aligned_cols=75 Identities=19% Similarity=0.296 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCccC-CChHHHHHHHhhhhhccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHHHHHHH
Q 000329 818 TDVRAGTLKILLHVLERCGEKLH-YSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAY 895 (1653)
Q Consensus 818 ~dVr~~iL~~L~~iL~~~g~~L~-sgW~~If~IL~~~~~~~~~~lv~~aF~~LqlI~~dfL~~Lp~~~~~~lV~~L~~F 895 (1653)
...|..+++.+..+++++.+.++ .|=.-|..++..+.+++++.-+-.+|+.++.|+..|- + .+...++.|++..|
T Consensus 96 q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~-~~~~e~lFd~~~cY 171 (262)
T PF14500_consen 96 QSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--I-SEFAEDLFDVFSCY 171 (262)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--c-chhHHHHHHHhhhe
Confidence 37799999999999999887774 4556777999999888999999999999999998875 2 44456666666655
No 25
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=65.30 E-value=96 Score=35.32 Aligned_cols=104 Identities=13% Similarity=0.134 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHHhCchhhccCHHHHHHHHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHHHHHHHHhhhHhHH
Q 000329 254 QRTFVLDILEFILSNHVSLFRMLVSYEQVLRHQICSLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITEC 333 (1653)
Q Consensus 254 ~k~~~LELlesvL~n~~~~F~~hpel~~llr~~lc~lLi~~ls~n~~~~~~~~~~~F~~~~lRi~~~Li~~~~~~L~~E~ 333 (1653)
.|.=+|+-|..++..+ .--...+.+...+| .+...+.+.+++. +.......+.++..+...++..+...+
T Consensus 23 ~r~~al~~L~~l~~~~-~~~~~~~~~~~~l~-~~~~~i~~~l~d~--------Rs~v~~~A~~~l~~l~~~l~~~~~~~~ 92 (228)
T PF12348_consen 23 ERVEALQKLRSLIKGN-APEDFPPDFVECLR-QLLDAIIKQLSDL--------RSKVSKTACQLLSDLARQLGSHFEPYA 92 (228)
T ss_dssp HHHHHHHHHHHHHHH--B-----HHHHHHHH----HHHHH-S-HH-----------HHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHHHHHHHHHHHcC-CccccHHHHHHHHH-HhHHHHHHHHhhh--------HHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 4677888888888888 22233577788888 5555555655541 333334678888999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcChH
Q 000329 334 EVFLSMLVKVTFLDLPLWHRILVLEILRGFCVEAR 368 (1653)
Q Consensus 334 EvfLs~Li~~l~~~~~~w~r~L~LEvl~~l~~dp~ 368 (1653)
+.++..|++.+...+ ..-|.-+.+.+..++..-.
T Consensus 93 ~~~l~~Ll~~~~~~~-~~i~~~a~~~L~~i~~~~~ 126 (228)
T PF12348_consen 93 DILLPPLLKKLGDSK-KFIREAANNALDAIIESCS 126 (228)
T ss_dssp HHHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHcccc-HHHHHHHHHHHHHHHHHCC
Confidence 999999999885533 4677778888877755443
No 26
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=64.84 E-value=3.5e+02 Score=34.70 Aligned_cols=232 Identities=14% Similarity=0.133 Sum_probs=0.0
Q ss_pred cCCChHHHHHHHHHHHHhhHHhhcCCCCCCCCCCCCCCCCcchhHHHHHHHH---HHhhhcchhhHHHHHHHHHHHh--c
Q 000329 675 ALMHISAVKSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSISFSVERMISIL---VNNLHRVEPLWDQVVGHFLELA--D 749 (1653)
Q Consensus 675 ~~l~~~al~~fv~ALc~lS~e~l~~~~~~~~~~~~~~~~~~~F~l~kL~ev~---~~N~~R~~~iW~~l~~hli~v~--~ 749 (1653)
..+|++++..+|..||. .+.+..+.+-+ +.|+-+ ...+......+..+. .
T Consensus 208 ~~iP~~sl~~~i~vLCs------------------------i~~~~~l~~~~w~~m~nL~~-S~~g~~~i~~L~~iL~~~ 262 (464)
T PF11864_consen 208 GDIPSESLSPCIEVLCS------------------------IVNSVSLCKPSWRTMRNLLK-SHLGHSAIRTLCDILRSP 262 (464)
T ss_pred CcCChHHHHHHHHHHhh------------------------HhcccccchhHHHHHHHHHc-CccHHHHHHHHHHHHccc
Q ss_pred CC----ChhHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhcchhhhHHHHHHhccHHHHhccCCcHHHHHHHH
Q 000329 750 NS----NQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAGTL 825 (1653)
Q Consensus 750 ~~----n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~dVr~~iL 825 (1653)
++ +.++--=|+..|+.++. .....+-........ .++..|... -...+.-|--.|+
T Consensus 263 ~~~~~~~~~~lRGAv~~l~~ll~------------------~~~~~~~~~l~~~~~-~vl~sl~~a-l~~~~~~v~~eIl 322 (464)
T PF11864_consen 263 DPQNKRDINVLRGAVFFLRMLLW------------------GSGEQGYPSLPFSPS-SVLPSLLNA-LKSNSPRVDYEIL 322 (464)
T ss_pred CccccccHHHHhhHHHHHHHHHh------------------ccccCCcceecccHH-HHHHHHHHH-HhCCCCeehHHHH
Q ss_pred HHHHHHH-HhcCCcc-CCChHHHHHHHhhhhhccch-----------hHHHHHHHHHHHHHhccCCCCChh-hHHHHHHH
Q 000329 826 KILLHVL-ERCGEKL-HYSWPSILELLRSVADASEK-----------DLITLGFQSLRFIMNDGLSSIPTD-CIHECVDV 891 (1653)
Q Consensus 826 ~~L~~iL-~~~g~~L-~sgW~~If~IL~~~~~~~~~-----------~lv~~aF~~LqlI~~dfL~~Lp~~-~~~~lV~~ 891 (1653)
..+..++ .+++..+ ...|..+++|+..+.+.-.+ +-+...+..+=-.+..-.+.-... .-..+++.
T Consensus 323 ~~i~~ll~~~~~~~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ie~L~~~~~~~g~~~~~~~f 402 (464)
T PF11864_consen 323 LLINRLLDGKYGRELSEEDWDIILDIIEEIFDKIQPFDSWYSNSSSLDQLSSNLHSLLSSIESLYEQHDFNGPKDKLFNF 402 (464)
T ss_pred HHHHHHHhHhhhhhhcccCchHHHHHHHHHHhhccccccccccccchHHHHHHHHHHHHHHHHHHhCCCcCccHHHHHHH
Q ss_pred HHHHHhcCCCcchhHHHHHHHHHHHHHHHcccCCCchhhHhhhhcccCCCccccCcchhhhhhcccccccCCCCCcchhh
Q 000329 892 TGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRD 971 (1653)
Q Consensus 892 L~~F~~q~~dlNISLtAi~~lW~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~ 971 (1653)
+.++...- +=+++.++- |-..+.- ...+
T Consensus 403 ~~~~~~~l-----p~s~~~~vl----~~~~~~~-------------------------------------------~Ps~ 430 (464)
T PF11864_consen 403 FERVHSYL-----PDSSALLVL----FYEERSC-------------------------------------------SPSN 430 (464)
T ss_pred HHHHhccC-----CHHHHHHHH----HHHhccc-------------------------------------------CCCC
Q ss_pred hhHHHHHHHHHH--hccCCcHHHHHHHHHHHHHH
Q 000329 972 KLLFAVFSLLKK--LGADERPEVRNSAIRTLFQT 1003 (1653)
Q Consensus 972 ~LW~~LL~~L~~--L~~D~R~EVRn~AIqTLfri 1003 (1653)
.-|..-+..|.+ ...+.|++||-.|++++-+|
T Consensus 431 ~~W~~n~~~ll~~F~~~~~~~~vRi~aL~~l~e~ 464 (464)
T PF11864_consen 431 PDWLDNLQKLLDRFYNRDRRSEVRIKALDVLEEI 464 (464)
T ss_pred hHHHHHHHHHHHHHhCCCCCchHHHHHHHHHhhC
No 27
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=56.02 E-value=1.5e+02 Score=36.14 Aligned_cols=117 Identities=15% Similarity=0.178 Sum_probs=84.0
Q ss_pred chhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhcchhhhHHHHHHhccHHHHh
Q 000329 733 VEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLY 812 (1653)
Q Consensus 733 ~~~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~ 812 (1653)
...+|..+.. ...|++..+|.+|++++...+..-. ..|...+|.-++..+..+.
T Consensus 122 ~~ggl~~ll~----~l~~~~~~lR~~Aa~Vigt~~qNNP----------------------~~Qe~v~E~~~L~~Ll~~l 175 (342)
T KOG2160|consen 122 SLGGLVPLLG----YLENSDAELRELAARVIGTAVQNNP----------------------KSQEQVIELGALSKLLKIL 175 (342)
T ss_pred hccCHHHHHH----HhcCCcHHHHHHHHHHHHHHHhcCH----------------------HHHHHHHHcccHHHHHHHH
Confidence 3567888887 3468899999999999998654211 1233455555677777777
Q ss_pred ccCCcHHHHHHHHHHHHHHHHhcCCcc-----CCChHHHHHHHhhhhhccchhHHHHHHHHHHHHHhccC
Q 000329 813 FSTQSTDVRAGTLKILLHVLERCGEKL-----HYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGL 877 (1653)
Q Consensus 813 ~~~~~~dVr~~iL~~L~~iL~~~g~~L-----~sgW~~If~IL~~~~~~~~~~lv~~aF~~LqlI~~dfL 877 (1653)
..+...++|..+|-.+..+|.++-.-. -.||..+..++..-.. +..+.+.++.-+..+.....
T Consensus 176 s~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~--~~~lkrK~~~Ll~~Ll~~~~ 243 (342)
T KOG2160|consen 176 SSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNT--SVKLKRKALFLLSLLLQEDK 243 (342)
T ss_pred ccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCc--chHHHHHHHHHHHHHHHhhh
Confidence 788888999999999999998754322 3799999998876422 45677777777776665433
No 28
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=53.96 E-value=1.4e+02 Score=32.91 Aligned_cols=81 Identities=15% Similarity=0.214 Sum_probs=55.5
Q ss_pred cchhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhcchhhhHHHHHHhccHHHH
Q 000329 732 RVEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVL 811 (1653)
Q Consensus 732 R~~~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L 811 (1653)
|...+=+....++.....++++.||..|+-.|.+|+..-.-+ .+.+ ++.-+..+
T Consensus 18 r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik-------------------~k~~-------l~~~~l~~ 71 (178)
T PF12717_consen 18 RYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK-------------------VKGQ-------LFSRILKL 71 (178)
T ss_pred hCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee-------------------ehhh-------hhHHHHHH
Confidence 556666777888888889999999999999999998632210 0011 11111122
Q ss_pred hccCCcHHHHHHHHHHHHHHHHh-cCCcc
Q 000329 812 YFSTQSTDVRAGTLKILLHVLER-CGEKL 839 (1653)
Q Consensus 812 ~~~~~~~dVr~~iL~~L~~iL~~-~g~~L 839 (1653)
-...+.+||.....++.++... .++.+
T Consensus 72 -l~D~~~~Ir~~A~~~~~e~~~~~~~~~i 99 (178)
T PF12717_consen 72 -LVDENPEIRSLARSFFSELLKKRNPNII 99 (178)
T ss_pred -HcCCCHHHHHHHHHHHHHHHHhccchHH
Confidence 1466889999999999999987 44444
No 29
>PF08427 DUF1741: Domain of unknown function (DUF1741); InterPro: IPR013636 This is a eukaryotic domain of unknown function.
Probab=53.74 E-value=3.1e+02 Score=31.84 Aligned_cols=68 Identities=26% Similarity=0.346 Sum_probs=49.4
Q ss_pred chhhhhHHHHHHHHHHhccCC-----cHHHHHHHHH--HHHHHHHhccCCC--CHHHHHHHHHHhHH--HHHHhhhhhh
Q 000329 968 VDRDKLLFAVFSLLKKLGADE-----RPEVRNSAIR--TLFQTLGSHGQKL--SESMWEDCLWNYVF--PMLDCASHMA 1035 (1653)
Q Consensus 968 ~~~~~LW~~LL~~L~~L~~D~-----R~EVRn~AIq--TLfril~~~G~~l--s~~~W~~~~~~VLF--PLld~l~~~~ 1035 (1653)
..|..||-.|+..+.=+++.. .+.|-.-+.+ .+|..+.+||+.| +|+.-+..|.+++- +.|+++....
T Consensus 57 Y~W~eLW~aLlsLl~Fl~~~~~~l~~~~~i~~L~~~vv~l~n~~is~GDtFLPsp~~yDdL~YelVr~~~v~~~~~~~~ 135 (237)
T PF08427_consen 57 YHWSELWRALLSLLRFLTTYESDLKDSPDIFQLAEQVVNLFNFFISYGDTFLPSPASYDDLFYELVRSGQVFDKFRDMY 135 (237)
T ss_pred ccHHHHHHHHHHHHHHHHhchhhhhcccChHHHHHHHHHHHHHHHHhccccCCChHHHHhHHHHhHhchHHHHHHHHHH
Confidence 359999999988887776432 3444444444 3477778999877 78899999999986 7888876543
No 30
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.78 E-value=87 Score=40.62 Aligned_cols=162 Identities=15% Similarity=0.205 Sum_probs=102.6
Q ss_pred hhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhcchhhhHHHHHHhccHHHHhc
Q 000329 734 EPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYF 813 (1653)
Q Consensus 734 ~~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~ 813 (1653)
..-|+-+-..+.++..+++...-+=|..+|..++...- ++- + .+...+.+. .++--|...+
T Consensus 123 ~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa---~~l-------------d-s~~~~rpl~-~mipkfl~f~- 183 (885)
T KOG2023|consen 123 LQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSA---QFL-------------D-SDVLTRPLN-IMIPKFLQFF- 183 (885)
T ss_pred cccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhH---HHH-------------h-hhcccCchH-HhHHHHHHHH-
Confidence 45689999999999999888888889999988654211 000 0 012234444 2333344443
Q ss_pred cCCcHHHHHHHHHHHHHHHHhcCCccCCChHHHHHHHhhhhhccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHHHHH
Q 000329 814 STQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTG 893 (1653)
Q Consensus 814 ~~~~~dVr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~~~~~~~~~lv~~aF~~LqlI~~dfL~~Lp~~~~~~lV~~L~ 893 (1653)
.++++.||...+.|+.+++-...+.+--.=+.-++.+-.-+.+.++.+=+.-...|-.+.+-....+-+ .+...|+-.-
T Consensus 184 ~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~p-hl~~IveyML 262 (885)
T KOG2023|consen 184 KHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVP-HLDNIVEYML 262 (885)
T ss_pred hCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhccc-chHHHHHHHH
Confidence 456899999999999999877776666556666666666566666666666666666665433333221 2333333222
Q ss_pred HHHhcCCCcchhHHHHHHHHHHH
Q 000329 894 AYSSQKTELNISLTAVGLLWTTT 916 (1653)
Q Consensus 894 ~F~~q~~dlNISLtAi~~lW~is 916 (1653)
...|+.|.|++|.|.++.-.++
T Consensus 263 -~~tqd~dE~VALEACEFwla~a 284 (885)
T KOG2023|consen 263 -QRTQDVDENVALEACEFWLALA 284 (885)
T ss_pred -HHccCcchhHHHHHHHHHHHHh
Confidence 2357789999999998654443
No 31
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=51.62 E-value=30 Score=26.39 Aligned_cols=29 Identities=17% Similarity=0.292 Sum_probs=24.3
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 000329 740 VVGHFLELADNSNQHLRNIALDALDQSIC 768 (1653)
Q Consensus 740 l~~hli~v~~~~n~~lr~~Avd~L~~li~ 768 (1653)
+..+|.+..++++..||..|+.+|.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 35678899999999999999999998764
No 32
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.57 E-value=7.7e+02 Score=33.33 Aligned_cols=45 Identities=18% Similarity=0.326 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHhcCCCcchhHHHHHHH
Q 000329 864 LGFQSLRFIMNDGLSSIPTDCIHECVDVTGAYSSQKTELNISLTAVGLL 912 (1653)
Q Consensus 864 ~aF~~LqlI~~dfL~~Lp~~~~~~lV~~L~~F~~q~~dlNISLtAi~~l 912 (1653)
+=|+|++-|++=... ..-....|++|++|..+. |-||-.-|+..|
T Consensus 293 ILYE~V~TI~~I~~~---~~LrvlainiLgkFL~n~-d~NirYvaLn~L 337 (866)
T KOG1062|consen 293 ILYECVRTIMDIRSN---SGLRVLAINILGKFLLNR-DNNIRYVALNML 337 (866)
T ss_pred HHHHHHHHHHhccCC---chHHHHHHHHHHHHhcCC-ccceeeeehhhH
Confidence 457888888752211 223567899999999886 888766555544
No 33
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=48.89 E-value=6.8e+02 Score=34.49 Aligned_cols=220 Identities=13% Similarity=0.104 Sum_probs=123.3
Q ss_pred hHHHHHHHHHHhhccCCChHHHHHHHHHHHHhhHHhhcCCCCCCCCC----CCCCCCC---cchhHHHHHH-HHHHhhhc
Q 000329 661 NVLSSLNSQLFESSALMHISAVKSLLSALHQLSHQCMIGTSSSFGPT----SSQKIGS---ISFSVERMIS-ILVNNLHR 732 (1653)
Q Consensus 661 ~il~~i~~~LFesS~~l~~~al~~fv~ALc~lS~e~l~~~~~~~~~~----~~~~~~~---~~F~l~kL~e-v~~~N~~R 732 (1653)
.++.++..++=+.|.. ....--.++..|..++...+...-++.-|+ -+.+... +.-.|.++.. ++..+-.+
T Consensus 435 ~iVkai~~qlr~ks~k-t~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~ 513 (1233)
T KOG1824|consen 435 LIVKAIQKQLREKSVK-TRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEV 513 (1233)
T ss_pred HHHHHHHHHHhhcccc-chhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhh
Confidence 4566665555555544 444444566677776655443322111110 0111000 1112222222 12333344
Q ss_pred chhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhcchhhhHHHHHHhccHHHHh
Q 000329 733 VEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLY 812 (1653)
Q Consensus 733 ~~~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~ 812 (1653)
.+..-..++.-......+|-..+.--|.-+.-+++. .+.+- ..+.... ....+..++-..+..+.
T Consensus 514 fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvk-virpl------~~~~~~d--------~~~~v~~m~~~tl~rL~ 578 (1233)
T KOG1824|consen 514 FHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVK-VIRPL------QPPSSFD--------ASPYVKTMYDCTLQRLK 578 (1233)
T ss_pred cccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHH-Hhccc------CCCccCC--------CChhHHHHHHHHHHHHh
Confidence 555555666666666666767777777777777665 33221 0100000 01112223333444555
Q ss_pred ccCCcHHHHHHHHHHHHHHHHhcCCccCCChHHHHHHHhhhhhccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHHHH
Q 000329 813 FSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVT 892 (1653)
Q Consensus 813 ~~~~~~dVr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~~~~~~~~~lv~~aF~~LqlI~~dfL~~Lp~~~~~~lV~~L 892 (1653)
....+-|||+..+.|+.+++-.+|+.++..-+.++.|+.---+ ++..--.|+..+.+|...-+..--...+...+.-+
T Consensus 579 a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l 656 (1233)
T KOG1824|consen 579 ATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLG--NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPEL 656 (1233)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh--chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHH
Confidence 6777889999999999999999999999999999988854332 44455578999999986554421134567777888
Q ss_pred HHHHhc
Q 000329 893 GAYSSQ 898 (1653)
Q Consensus 893 ~~F~~q 898 (1653)
..|++.
T Consensus 657 ~~flrK 662 (1233)
T KOG1824|consen 657 ASFLRK 662 (1233)
T ss_pred HHHHHH
Confidence 888764
No 34
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.42 E-value=73 Score=45.47 Aligned_cols=41 Identities=22% Similarity=0.523 Sum_probs=35.2
Q ss_pred CCcHHHHHHHHHHHHHHHHhcCCccC-CChHHHHHHHhhhhh
Q 000329 815 TQSTDVRAGTLKILLHVLERCGEKLH-YSWPSILELLRSVAD 855 (1653)
Q Consensus 815 ~~~~dVr~~iL~~L~~iL~~~g~~L~-sgW~~If~IL~~~~~ 855 (1653)
....+||.+.|+.+..++..+|+.+. .-|..||.++-.+++
T Consensus 1185 ~~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~~~fpIF~ 1226 (1514)
T KOG0929|consen 1185 DYRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFRILFPIFD 1226 (1514)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHheeeccc
Confidence 45679999999999999999999996 689999997766654
No 35
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.89 E-value=9.3e+02 Score=32.63 Aligned_cols=134 Identities=20% Similarity=0.261 Sum_probs=91.1
Q ss_pred cChhH-HHHHHHHHHHHhCCCCCCcccCchhHHHHHHHHhcCCCchhHHHHHHHHHHHHhcCC--CC--cchHHHHHHHH
Q 000329 21 RYPAV-KDGAEHAILKLRSLSSPSELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDA--VA--PSALKEIFSML 95 (1653)
Q Consensus 21 K~~~l-k~A~e~al~~Lk~~~~~~~~~~~~~~l~PfllaC~skn~kl~~iaL~~lqkLi~~~~--i~--~~~l~~Il~~l 95 (1653)
++|.| |+|+-.+...+|..++ ..+.|+.+|.-....|+.-+...++.-++.++.-+- +. .+.++..+..|
T Consensus 154 ~~~~irKKA~Lca~r~irK~P~-----l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iL 228 (866)
T KOG1062|consen 154 RDPYIRKKAALCAVRFIRKVPD-----LVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKIL 228 (866)
T ss_pred CCHHHHHHHHHHHHHHHHcCch-----HHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 45666 6788888888777654 245788888888888888888888888888887642 21 12345555555
Q ss_pred Hcc-----------cCCCCchHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHhhhcccCChHHHHHHHHHHHHHHHHH
Q 000329 96 KNH-----------ADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQALGICLRLLENNRSSDSVRNTAAATFRQAVAL 164 (1653)
Q Consensus 96 ~~~-----------~~~~~e~vqLKILQ~L~~l~~s~~~~~~g~~L~~~L~~C~~L~~~sk~~~vv~~TA~ATL~Qlv~~ 164 (1653)
.+. ....|-=.|.|||+.|..+-++.. -.-|.|.+.|.-.++=..+| .|.--|-|-+-|.+
T Consensus 229 k~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~--daSd~M~DiLaqvatntdss------kN~GnAILYE~V~T 300 (866)
T KOG1062|consen 229 KQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDA--DASDLMNDILAQVATNTDSS------KNAGNAILYECVRT 300 (866)
T ss_pred HHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCc--cHHHHHHHHHHHHHhccccc------ccchhHHHHHHHHH
Confidence 433 345666789999999999999842 24567777776555543444 44556778888888
Q ss_pred HHH
Q 000329 165 IFD 167 (1653)
Q Consensus 165 VF~ 167 (1653)
||+
T Consensus 301 I~~ 303 (866)
T KOG1062|consen 301 IMD 303 (866)
T ss_pred HHh
Confidence 775
No 36
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=45.82 E-value=54 Score=32.48 Aligned_cols=73 Identities=15% Similarity=0.121 Sum_probs=47.9
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhcchhhhHHHHHHhccHHHHhccCCcHH
Q 000329 740 VVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTD 819 (1653)
Q Consensus 740 l~~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~d 819 (1653)
+..++++...+++..+|..|+.+|..++... ++ ......+..++..+..++. +.+.+
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-----------------~~-----~~~~~~~~~~i~~l~~~l~-~~~~~ 64 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGN-----------------ND-----NIQAVVEAGGLPALVQLLK-SEDEE 64 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCC-----------------HH-----HHHHHHHCCChHHHHHHHh-CCCHH
Confidence 4567777888888999999999999876521 00 0001112123444555544 35789
Q ss_pred HHHHHHHHHHHHHHhc
Q 000329 820 VRAGTLKILLHVLERC 835 (1653)
Q Consensus 820 Vr~~iL~~L~~iL~~~ 835 (1653)
+++..+.+|.++.+..
T Consensus 65 v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 65 VVKAALWALRNLAAGP 80 (120)
T ss_pred HHHHHHHHHHHHccCc
Confidence 9999999999997654
No 37
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.30 E-value=9.8e+02 Score=32.43 Aligned_cols=140 Identities=17% Similarity=0.197 Sum_probs=86.6
Q ss_pred HHHHHHHhccCC-cHHHHHHHHHHHHHHHHhccCCCCHHHHHHHH---HHhHHHHHHhhhhhhccCCcccccccccCcCC
Q 000329 977 VFSLLKKLGADE-RPEVRNSAIRTLFQTLGSHGQKLSESMWEDCL---WNYVFPMLDCASHMAATSSKDEWQGKELGTRG 1052 (1653)
Q Consensus 977 LL~~L~~L~~D~-R~EVRn~AIqTLfril~~~G~~ls~~~W~~~~---~~VLFPLld~l~~~~~~~~~~~~~~~~~~~~~ 1052 (1653)
++..+.++-.|+ ..-||=.|++||=-.++.. .|+++.....+ +..+|.|+..+.+
T Consensus 527 ~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~--nF~~dsFlp~lenlf~~lfkll~~~~e------------------- 585 (978)
T KOG1993|consen 527 LYCAFLNLLQDQNDLVVRLTTARTLKLVVDDW--NFSEDSFLPYLENLFVLLFKLLKAVEE------------------- 585 (978)
T ss_pred HHHHHHHhcCccccceeehHHHHHHHHhhhhc--cCChhhhhhhHHHHHHHHHHHHHHHhh-------------------
Confidence 556667778887 8999999999987777743 35555554443 3334444443321
Q ss_pred CccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHcC--CchHHHHHHHHHHH
Q 000329 1053 GKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILN--GSKEVSLAAINCLQ 1130 (1653)
Q Consensus 1053 ~~~~~~~ihhsr~t~~k~W~ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~LL~~~~~~i~~--~~~els~a~~~~L~ 1130 (1653)
-||++.+|+.++.+..+-=..+.. .=..+++|+..+... +..-+..|.+..|+
T Consensus 586 -------------------~Dtk~~VL~~ls~lI~r~~e~I~P------~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~ 640 (978)
T KOG1993|consen 586 -------------------CDTKTSVLNLLSTLIERVSEHIAP------YASTIVQYLPLLWEESEEEPLLRCALLATLR 640 (978)
T ss_pred -------------------hhhHHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHhhhccCcHHHHHHHHHHH
Confidence 267888888888887766555532 223466666666543 22347777788888
Q ss_pred HHHhhhcCCCC-----------------CCh--hhHHHHHHHHHHhhcCCC
Q 000329 1131 TTVLSHSTKGN-----------------LPV--AYLNSVLDVYEYALQKSP 1162 (1653)
Q Consensus 1131 ~lL~~~~~~~~-----------------~~~--~~~~~~~~~w~~~~~~~~ 1162 (1653)
+++...+.... .|+ -..+..+++|......++
T Consensus 641 ~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~ 691 (978)
T KOG1993|consen 641 NLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQ 691 (978)
T ss_pred HHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhccc
Confidence 88877664321 011 234567788886665543
No 38
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.16 E-value=7e+02 Score=35.14 Aligned_cols=201 Identities=15% Similarity=0.118 Sum_probs=0.0
Q ss_pred cCCChhHHHHHHHHHHHHHHH-----HhccccccccccccCCCChhhhhcchhhhHHHHHHhccHHHHhccCCcHHHHHH
Q 000329 749 DNSNQHLRNIALDALDQSICA-----VLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAG 823 (1653)
Q Consensus 749 ~~~n~~lr~~Avd~L~~li~~-----~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~dVr~~ 823 (1653)
++.+..++.+|-+.|..++.. +. ......+++.++.++... ..-++.-
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~----------------------~q~i~~I~n~L~ds~qs~-----~~~~~~~ 716 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGEGLV----------------------EQRIDDIFNSLLDSFQSS-----SSPAQAS 716 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchhhHH----------------------HHHHHHHHHHHHHHHhcc-----chHHHHH
Q ss_pred HHHHHHHHHHhcC-CccCCChHHHHHHHhhhhhccchhHHHHHHHHHHHHH--hccCCCCChh---hHHHHHHHHHHHHh
Q 000329 824 TLKILLHVLERCG-EKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIM--NDGLSSIPTD---CIHECVDVTGAYSS 897 (1653)
Q Consensus 824 iL~~L~~iL~~~g-~~L~sgW~~If~IL~~~~~~~~~~lv~~aF~~LqlI~--~dfL~~Lp~~---~~~~lV~~L~~F~~ 897 (1653)
-+.||+.|++.++ +....==+.|-++|-+. .+.+...=+.||+||..|+ .-++...... .+...+..++.=--
T Consensus 717 rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~ 795 (1176)
T KOG1248|consen 717 RLKCLKRLLKLLSAEHCDLIPKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLV 795 (1176)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhc
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHcccCCCchhhHhhhhcccCCCccccCcchhhhhhcccccccCCCCCcchhhhhHHHH
Q 000329 898 QKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLLFAV 977 (1653)
Q Consensus 898 q~~dlNISLtAi~~lW~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~LW~~L 977 (1653)
.+.-.+++-+ |-.+-.+-.-....+. +..-..+
T Consensus 796 gd~~~~~as~-Ivai~~il~e~~~~ld----------------------------------------------~~~l~~l 828 (1176)
T KOG1248|consen 796 GDSTRVVASD-IVAITHILQEFKNILD----------------------------------------------DETLEKL 828 (1176)
T ss_pred ccHHHHHHHH-HHHHHHHHHHHhcccc----------------------------------------------HHHHHHH
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhH
Q 000329 978 FSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYV 1024 (1653)
Q Consensus 978 L~~L~~L~~D~R~EVRn~AIqTLfril~~~G~~ls~~~W~~~~~~VL 1024 (1653)
+.-+.......++|||.+||.-+=..+...-...-...-+.++-.++
T Consensus 829 i~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll 875 (1176)
T KOG1248|consen 829 ISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLL 875 (1176)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHH
No 39
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=43.25 E-value=3.3e+02 Score=29.27 Aligned_cols=119 Identities=14% Similarity=0.163 Sum_probs=69.0
Q ss_pred ccCCcHHHHHHHHHHHHHHHHhcc--CCCCHHHHHHHHHHhHHHHHHhhhhhhccCCcccccccccCcCCCccchhhccc
Q 000329 985 GADERPEVRNSAIRTLFQTLGSHG--QKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHH 1062 (1653)
Q Consensus 985 ~~D~R~EVRn~AIqTLfril~~~G--~~ls~~~W~~~~~~VLFPLld~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ihh 1062 (1653)
....+.-=|+.|++.|-+++.... ..++...|+.+| +.||-.++.-.+......
T Consensus 13 L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~if-eaL~~~i~~Ek~~y~~~~----------------------- 68 (155)
T PF11640_consen 13 LSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIF-EALFRCIEKEKEAYSRKK----------------------- 68 (155)
T ss_pred HhccccchHHHHHHHHHHHHcCccccccCCcchHHHHH-HHHHHHHHHHHHHHhcCC-----------------------
Confidence 345667789999999999998654 889999998876 466766665443221000
Q ss_pred ccchhhhhH----HHHHHHHHHHHHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHcCCchH----HHHHHHHHHHHHHh
Q 000329 1063 SRNTAQKQW----DETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKE----VSLAAINCLQTTVL 1134 (1653)
Q Consensus 1063 sr~t~~k~W----~ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~LL~~~~~~i~~~~~e----ls~a~~~~L~~lL~ 1134 (1653)
+.......- .+.+.-++..++......+.. +.-..|++++.+.+.....+ ++.--.++|+.+|.
T Consensus 69 ~~~~s~~~~~~~RL~~~a~~lR~~ve~~~~~~k~--------kt~~~Ll~hI~~~l~~~~~~~~~p~~~Dy~k~L~~iL~ 140 (155)
T PF11640_consen 69 SSSASTATTAESRLSSCASALRLFVEKSNSRLKR--------KTVKALLDHITDLLPDPDDSLLEPLSLDYSKILKAILS 140 (155)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHhhccc--------chHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHC
Confidence 000000111 233444444444444444332 23456888888888766643 55555666666665
Q ss_pred h
Q 000329 1135 S 1135 (1653)
Q Consensus 1135 ~ 1135 (1653)
.
T Consensus 141 ~ 141 (155)
T PF11640_consen 141 Y 141 (155)
T ss_pred C
Confidence 4
No 40
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.33 E-value=3.1e+02 Score=36.21 Aligned_cols=109 Identities=13% Similarity=0.159 Sum_probs=76.7
Q ss_pred CCcHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHhhhhhhccCCcccccccccCcCCCccchhhcccccch
Q 000329 987 DERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNT 1066 (1653)
Q Consensus 987 D~R~EVRn~AIqTLfril~~~G~~ls~~~W~~~~~~VLFPLld~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ihhsr~t 1066 (1653)
-+..+||..|...||..+---|..+..+.-+.++.+-.. .+.++.+. +
T Consensus 185 a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~-~l~~LL~d------------~------------------- 232 (1005)
T KOG1949|consen 185 ARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFE-ELYSLLED------------P------------------- 232 (1005)
T ss_pred cCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHH-HHHHHhcC------------C-------------------
Confidence 366899999999999999888888888888888766544 34444321 1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhcccCchHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHHHHhhh
Q 000329 1067 AQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSI-LNGSKEVSLAAINCLQTTVLSH 1136 (1653)
Q Consensus 1067 ~~k~W~ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~LL~~~~~~i-~~~~~els~a~~~~L~~lL~~~ 1136 (1653)
.-.-+..|..|++|+|..|+..+-. ..-..+|.++..-+ .....+|-.++++++-.++-..
T Consensus 233 ----~p~VRS~a~~gv~k~~s~fWe~iP~-----~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np 294 (1005)
T KOG1949|consen 233 ----YPMVRSTAILGVCKITSKFWEMIPP-----TILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP 294 (1005)
T ss_pred ----CchHHHHHHHHHHHHHHHHHHHcCH-----HHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc
Confidence 1133456789999999999987642 24455666665444 3444688889999988877543
No 41
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=38.84 E-value=1.2e+02 Score=33.76 Aligned_cols=89 Identities=10% Similarity=0.238 Sum_probs=69.4
Q ss_pred hhHHHHHHHHhcCCCchhHHHHHHHHHHHHhcCCCCcch-HHHHHHHHHcccCCCCchHHHHHHHHHHHHHcCCCCCCCh
Q 000329 49 EDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAPSA-LKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLHPENE 127 (1653)
Q Consensus 49 ~~~l~PfllaC~skn~kl~~iaL~~lqkLi~~~~i~~~~-l~~Il~~l~~~~~~~~e~vqLKILQ~L~~l~~s~~~~~~g 127 (1653)
..|+..++-.|-+.++++-..|+..|+-.+.+|++.|.. ++.++ ||. ++ .+..+.=+-.+.+..+...|...++
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lI-AL~--ts-~~~~ir~~A~~~l~~l~eK~~s~v~- 81 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLI-ALE--TS-PNPSIRSRAYQLLKELHEKHESLVE- 81 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhh-hhh--CC-CChHHHHHHHHHHHHHHHHhHHHHH-
Confidence 578999999999999999999999999999999998864 55555 443 22 3446777888888888888765553
Q ss_pred HHHHHHHHHHHhhhc
Q 000329 128 DNMAQALGICLRLLE 142 (1653)
Q Consensus 128 ~~L~~~L~~C~~L~~ 142 (1653)
....++++.+|..+.
T Consensus 82 ~~~~~gi~~af~~~~ 96 (187)
T PF12830_consen 82 SRYSEGIRLAFDYQR 96 (187)
T ss_pred HHHHHHHHHHHHHHH
Confidence 356778888888765
No 42
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=38.68 E-value=71 Score=30.87 Aligned_cols=53 Identities=17% Similarity=0.320 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 000329 1073 ETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQT 1131 (1653)
Q Consensus 1073 ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~LL~~~~~~i~~~~~els~a~~~~L~~ 1131 (1653)
|.+-+.+..+..+...+-+.|. ..|..+++.+......++.++...|+.+++.
T Consensus 33 ~vre~il~ci~qil~~~~~~i~------SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 33 DVRELILECILQILQSRGENIK------SGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHHHHHHhHHHHH------hccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 7788889999999998888775 3799999999999998899999999999875
No 43
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=38.52 E-value=5.9e+02 Score=30.51 Aligned_cols=104 Identities=20% Similarity=0.253 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhcchhhhHHHHHHhccHHHHhccCCcH
Q 000329 739 QVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQST 818 (1653)
Q Consensus 739 ~l~~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~ 818 (1653)
.+.+.+.-...|++..+|+.|+.+|--.+. +.++ .....+. -|...+. ..+.
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~L--ld~~--------------------~a~~~l~-----l~~~~~~-~~~~ 78 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCL--LDKE--------------------LAKEHLP-----LFLQALQ-KDDE 78 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHH--hChH--------------------HHHHHHH-----HHHHHHH-hCCH
Confidence 344444467788899999999999987543 2210 0111221 1222222 2378
Q ss_pred HHHHHHHHHHHHHHHhcCCccCCChH---------HHHHHHhhhhhccchhHHHHHHHHHH
Q 000329 819 DVRAGTLKILLHVLERCGEKLHYSWP---------SILELLRSVADASEKDLITLGFQSLR 870 (1653)
Q Consensus 819 dVr~~iL~~L~~iL~~~g~~L~sgW~---------~If~IL~~~~~~~~~~lv~~aF~~Lq 870 (1653)
+|+...++++-.++-.||...-..+. .+.+++.......++++-..+-+.+-
T Consensus 79 ~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~ 139 (298)
T PF12719_consen 79 EVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLC 139 (298)
T ss_pred HHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999999999977754444 35566655444334444444444443
No 44
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.18 E-value=3.3e+02 Score=35.05 Aligned_cols=213 Identities=15% Similarity=0.204 Sum_probs=123.0
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhcchhhhHHHHHHhccHHHHhccCCcHHHH
Q 000329 742 GHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVR 821 (1653)
Q Consensus 742 ~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~dVr 821 (1653)
..|+.+..+++..|+++|+=+|-.++... ..- ....+..-.+.|+..++..+...-++
T Consensus 155 p~fi~Ll~s~~~~v~eQavWALgNIagds------------------~~~----Rd~vl~~g~l~pLl~~l~~~~~~~~l 212 (514)
T KOG0166|consen 155 PIFIQLLSSPSADVREQAVWALGNIAGDS------------------PDC----RDYVLSCGALDPLLRLLNKSDKLSML 212 (514)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHhccccCC------------------hHH----HHHHHhhcchHHHHHHhccccchHHH
Confidence 34889999999999999999999876411 111 12345555677888776555445688
Q ss_pred HHHHHHHHHHHHhcCCccCCChHHHHHHHhhhhh---ccchhHHHHHHHHHHHHHhccCCC----CChhhHHHHHHHHHH
Q 000329 822 AGTLKILLHVLERCGEKLHYSWPSILELLRSVAD---ASEKDLITLGFQSLRFIMNDGLSS----IPTDCIHECVDVTGA 894 (1653)
Q Consensus 822 ~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~~~~---~~~~~lv~~aF~~LqlI~~dfL~~----Lp~~~~~~lV~~L~~ 894 (1653)
+.+..+|.++..... =.--|..|=.+|..... ..++.+..-|.-.+..+.+.--.. +.......+|++|..
T Consensus 213 Rn~tW~LsNlcrgk~--P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~ 290 (514)
T KOG0166|consen 213 RNATWTLSNLCRGKN--PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGH 290 (514)
T ss_pred HHHHHHHHHHHcCCC--CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcC
Confidence 889999998876432 34466666665554432 345555566666666555322111 223445566666665
Q ss_pred HHhcCCCcchhHHHHHHHHHHHHHHHcccCCCchhhHhhhhcccCCCccccCcchhhhhhcccccccCCCCCcchhhhhH
Q 000329 895 YSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLL 974 (1653)
Q Consensus 895 F~~q~~dlNISLtAi~~lW~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~LW 974 (1653)
.- .++-..|+..+ +. +.. ++. .++. .-.+.
T Consensus 291 ~~-----~~v~~PaLRai---GN-Ivt----G~d-----------------------~QTq------------~vi~~-- 320 (514)
T KOG0166|consen 291 SS-----PKVVTPALRAI---GN-IVT----GSD-----------------------EQTQ------------VVINS-- 320 (514)
T ss_pred CC-----cccccHHHhhc---cc-eee----ccH-----------------------HHHH------------HHHhc--
Confidence 53 22322232221 11 111 100 0000 00111
Q ss_pred HHHHHHHHHhcc-CCcHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHhhhhh
Q 000329 975 FAVFSLLKKLGA-DERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHM 1034 (1653)
Q Consensus 975 ~~LL~~L~~L~~-D~R~EVRn~AIqTLfril~~~G~~ls~~~W~~~~~~VLFPLld~l~~~ 1034 (1653)
..|..|..+-. .+..-+|+.|+=|+-.|-. |. .+.=+.++..-++|.+-.+.+.
T Consensus 321 -~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA--G~---~~qiqaVida~l~p~Li~~l~~ 375 (514)
T KOG0166|consen 321 -GALPVLSNLLSSSPKESIKKEACWTISNITA--GN---QEQIQAVIDANLIPVLINLLQT 375 (514)
T ss_pred -ChHHHHHHHhccCcchhHHHHHHHHHHHhhc--CC---HHHHHHHHHcccHHHHHHHHhc
Confidence 13455566555 4444499999999888876 53 3456788888999998888643
No 45
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=37.81 E-value=3.2e+02 Score=30.07 Aligned_cols=136 Identities=12% Similarity=0.060 Sum_probs=76.4
Q ss_pred ChhHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhcchhhhHHHHHHhccHHHHhccCCcHHHHHHHHHHHHHH
Q 000329 752 NQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHV 831 (1653)
Q Consensus 752 n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~dVr~~iL~~L~~i 831 (1653)
|+.+|..|+.++.+++.++-. ..+.. ...+... -...++.||+..+.+|.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~--------------------------~ve~~-~~~l~~~-L~D~~~~VR~~al~~Ls~L 52 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN--------------------------LVEPY-LPNLYKC-LRDEDPLVRKTALLVLSHL 52 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH--------------------------HHHhH-HHHHHHH-HCCCCHHHHHHHHHHHHHH
Confidence 578999999999999885410 01100 0011111 1456889999999999999
Q ss_pred HHhcCCccCCChHHH-HHHHhhhhhccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHhcCCCcchhHHHHH
Q 000329 832 LERCGEKLHYSWPSI-LELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAYSSQKTELNISLTAVG 910 (1653)
Q Consensus 832 L~~~g~~L~sgW~~I-f~IL~~~~~~~~~~lv~~aF~~LqlI~~dfL~~Lp~~~~~~lV~~L~~F~~q~~dlNISLtAi~ 910 (1653)
+.+. .++- ...+ +.++... .|.++.+...|=.++.-+....-+..-.+. +++++..|.....+..+.-....
T Consensus 53 i~~d--~ik~-k~~l~~~~l~~l-~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~---~~e~i~~l~~~~~~~~~~~~~~~ 125 (178)
T PF12717_consen 53 ILED--MIKV-KGQLFSRILKLL-VDENPEIRSLARSFFSELLKKRNPNIIYNN---FPELISSLNNCYEHPVYGPLSRE 125 (178)
T ss_pred HHcC--ceee-hhhhhHHHHHHH-cCCCHHHHHHHHHHHHHHHHhccchHHHHH---HHHHHHHHhCccccccccccCHH
Confidence 9752 3322 2233 4666555 445677777777777766654222222344 45555555543322211112334
Q ss_pred HHHHHHHHHHcc
Q 000329 911 LLWTTTDFIAKG 922 (1653)
Q Consensus 911 ~lW~isD~L~~~ 922 (1653)
-.+.+-+|+-+.
T Consensus 126 ~~~~I~~fll~~ 137 (178)
T PF12717_consen 126 KRKKIYKFLLDF 137 (178)
T ss_pred HHHHHHHHHHHH
Confidence 556666666654
No 46
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=37.46 E-value=9.8e+02 Score=30.49 Aligned_cols=277 Identities=13% Similarity=0.117 Sum_probs=136.5
Q ss_pred hhhHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhcchhhhHHHHHHhccHHHHh
Q 000329 734 EPLWDQVVGHFLELADNS-NQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLY 812 (1653)
Q Consensus 734 ~~iW~~l~~hli~v~~~~-n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~ 812 (1653)
..+=+.++.-+..++.+| |+..--|.-+++--++....+. +......||..++-||..+.
T Consensus 66 ~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~-------------------~~~~v~~~E~~L~P~f~~IL 126 (435)
T PF03378_consen 66 VEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEA-------------------DPEAVSQFEEALFPPFQEIL 126 (435)
T ss_dssp HHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GG-------------------GHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCC-------------------ChhHHHHHHHHHHHHHHHHH
Confidence 344445666666788887 8999999999988877633211 01233468878888888776
Q ss_pred ccCCcHHHHHHHHHHHHHHHHhcC-CccCCChHHHHHHHhhhhhccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHHH
Q 000329 813 FSTQSTDVRAGTLKILLHVLERCG-EKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDV 891 (1653)
Q Consensus 813 ~~~~~~dVr~~iL~~L~~iL~~~g-~~L~sgW~~If~IL~~~~~~~~~~lv~~aF~~LqlI~~dfL~~Lp~~~~~~lV~~ 891 (1653)
..+. .|.---+++-+..+++.+. ..+......+|..|-+..- =.- ..+++.++..
T Consensus 127 q~dV-~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~l----------------------We~-~gniPalvrL 182 (435)
T PF03378_consen 127 QQDV-QEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPAL----------------------WER-RGNIPALVRL 182 (435)
T ss_dssp HTT--TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGG----------------------GGS-TTTHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcch----------------------hcc-CCCcCcHHHH
Confidence 5432 2555556677778888776 4554444444444433211 011 1346677777
Q ss_pred HHHHHhcCCCcchhHHHHHHHHHHHHHHHcccCCCchhhHhhhhcccCCCccccCcchhhhhhcccccccCCCCCcchhh
Q 000329 892 TGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRD 971 (1653)
Q Consensus 892 L~~F~~q~~dlNISLtAi~~lW~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~ 971 (1653)
|.+|.+.....-.+=.-+.-++++-..|-.. +.. + ..+.. .-+.....++. .... .-..
T Consensus 183 L~a~i~k~~~~i~~~~~l~~iLgvFQkLi~s---k~~-D-~~gF~------------LL~~iv~~~p~---~~l~-~yl~ 241 (435)
T PF03378_consen 183 LQAYIKKDPSFIVANNQLEPILGVFQKLIAS---KAN-D-HYGFD------------LLESIVENLPP---EALE-PYLK 241 (435)
T ss_dssp HHHHHHHHGGG----S-CHHHHHHHHHHHT----TTC-H-HHHHH------------HHHHHHHHS-H---HHHG-GGHH
T ss_pred HHHHHHhCchhhcchhhHHHHHHHHHHHHCC---CCc-c-hHHHH------------HHHHHHHHCCH---HHHH-HHHH
Confidence 7777765433222223334445555555432 111 0 00000 00111111110 0000 1234
Q ss_pred hhHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHhcc--------CCCCHHHHHHHHHHhHHHHHHhhhhhhccCCcccc
Q 000329 972 KLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHG--------QKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEW 1043 (1653)
Q Consensus 972 ~LW~~LL~~L~~L~~D~R~EVRn~AIqTLfril~~~G--------~~ls~~~W~~~~~~VLFPLld~l~~~~~~~~~~~~ 1043 (1653)
.+|..+|.+|.+- .-...+++=+..+.-....|| +...+..|..++.+++.|-++++...
T Consensus 242 ~I~~lll~RLq~s---kT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~--------- 309 (435)
T PF03378_consen 242 QIFTLLLTRLQSS---KTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGP--------- 309 (435)
T ss_dssp HHHHHHHHHHHHC-----HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SH---------
T ss_pred HHHHHHHHHHhhC---CcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCc---------
Confidence 6888888888652 222333333333222223344 24456678888888888866655311
Q ss_pred cccccCcCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHcCCc
Q 000329 1044 QGKELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGS 1118 (1653)
Q Consensus 1044 ~~~~~~~~~~~~~~~~ihhsr~t~~k~W~ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~LL~~~~~~i~~~~ 1118 (1653)
.| +.++.=|++++...- +.+.. ...+.|..+++-+-+++....
T Consensus 310 ----------------------------~e-rKi~~vGltkLL~es-~~~~~--~~~~~w~~ll~~Ll~ll~~p~ 352 (435)
T PF03378_consen 310 ----------------------------IE-RKICAVGLTKLLCES-PAFLS--EYSQLWPPLLEALLKLLERPP 352 (435)
T ss_dssp ----------------------------HH-HHHHHHHHHHHHHSS-TTHHH--H-CHHHHHHHHHHHHHHHTTS
T ss_pred ----------------------------ch-hhHHHHHHHHHHhcc-Hhhhh--HHHHHHHHHHHHHHHHHcCCc
Confidence 12 234455777777542 22211 146789999998888776544
No 47
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=36.55 E-value=3.7e+02 Score=32.19 Aligned_cols=66 Identities=18% Similarity=0.185 Sum_probs=47.5
Q ss_pred hcChhHHHHHHHHHHHHhCCCCCCc---------ccCchhHHHHHHHHhcCCCchhHHHHHHHHHHHHhcCCCCc
Q 000329 20 RRYPAVKDGAEHAILKLRSLSSPSE---------LAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAP 85 (1653)
Q Consensus 20 RK~~~lk~A~e~al~~Lk~~~~~~~---------~~~~~~~l~PfllaC~skn~kl~~iaL~~lqkLi~~~~i~~ 85 (1653)
+-+..||-.|=+++-.+=....... ......+++-|.-...+.++++..+|..++-||+-+|.+..
T Consensus 75 ~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~ 149 (298)
T PF12719_consen 75 KDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD 149 (298)
T ss_pred hCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc
Confidence 3466677666666544433332211 12356788889888888899999999999999999999877
No 48
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=34.00 E-value=9.2e+02 Score=29.17 Aligned_cols=156 Identities=17% Similarity=0.123 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhhcCCCCCChhhHHHHH
Q 000329 1072 DETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKGNLPVAYLNSVL 1151 (1653)
Q Consensus 1072 ~ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~LL~~~~~~i~~~~~els~a~~~~L~~lL~~~~~~~~~~~~~~~~~~ 1151 (1653)
.+|+.-+|.++.++|.+++.. +...+...+|++.+.++++.++.+=...|.+.+.=+....+.. .-..++++.+.
T Consensus 57 ~~~Re~aL~~l~~~l~~~~~~----d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g-~~~~ei~~~~~ 131 (309)
T PF05004_consen 57 SSTREAALEALIRALSSRYLP----DFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAG-EDSEEIFEELK 131 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccH----HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCC-ccHHHHHHHHH
Confidence 478999999999999887741 2223467889999999998887533334555554444443322 22456777777
Q ss_pred HHHHHhhcCCCCCCCCCCcchhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHcccCCCCCCccccCC--CCHHHH
Q 000329 1152 DVYEYALQKSPNYSDNAAGKVKQEILHGLGELYVQAQKMFDDRMYGQLLAIIDLAVRQTMITHDNYEIEFGH--VPPVLR 1229 (1653)
Q Consensus 1152 ~~w~~~~~~~~~~~~~~~~~~~q~~l~~f~~ly~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~d~~~--~s~lQ~ 1229 (1653)
.+..+++.-... ..+..+.++.+++-+--. ..-+.+.+...+..|.......++..+...+.+.. -+++..
T Consensus 132 ~~L~~~l~d~s~-----~~~~R~~~~~aLai~~fv--~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 132 PVLKRILTDSSA-----SPKARAACLEALAICTFV--GGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred HHHHHHHhCCcc-----chHHHHHHHHHHHHHHHh--hcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 777666543311 123446666666554321 23456777766666663322112222222222222 468999
Q ss_pred HHHHhccccC
Q 000329 1230 TILEILPLLS 1239 (1653)
Q Consensus 1230 ~vl~~l~~i~ 1239 (1653)
+.|.+--++-
T Consensus 205 aAL~aW~lLl 214 (309)
T PF05004_consen 205 AALSAWALLL 214 (309)
T ss_pred HHHHHHHHHH
Confidence 9999855543
No 49
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=33.37 E-value=6e+02 Score=27.53 Aligned_cols=87 Identities=18% Similarity=0.056 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhhHHhhcCCCCCCCCCCCCCCCCcchhHHHHHHHHHHhhhc----------chhhHHHHHHHHHHHhcCC
Q 000329 682 VKSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSISFSVERMISILVNNLHR----------VEPLWDQVVGHFLELADNS 751 (1653)
Q Consensus 682 l~~fv~ALc~lS~e~l~~~~~~~~~~~~~~~~~~~F~l~kL~ev~~~N~~R----------~~~iW~~l~~hli~v~~~~ 751 (1653)
...+++.||.++........ ..........++.|+++-+-.+...+-.. ...+++.+..++...+.++
T Consensus 8 a~~vf~~Lc~L~~~~~~~~~--~~~~~~~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~ 85 (168)
T PF12783_consen 8 AFLVFRDLCSLSSKPSDPGN--SPDFLSHDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSS 85 (168)
T ss_pred HHHHHHHHHHHhCCCCCCCC--CcchhhhhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence 34567889999853321110 00000112344678876555443222111 2456788999999999888
Q ss_pred ChhHHHHHHHHHHHHHHHH
Q 000329 752 NQHLRNIALDALDQSICAV 770 (1653)
Q Consensus 752 n~~lr~~Avd~L~~li~~~ 770 (1653)
+..+-..+...+..+..++
T Consensus 86 ~~~i~~~slri~~~l~~~~ 104 (168)
T PF12783_consen 86 DFPIFSRSLRIFLTLLSRF 104 (168)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 8888889999999888755
No 50
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=32.76 E-value=1.3e+02 Score=40.54 Aligned_cols=92 Identities=14% Similarity=0.253 Sum_probs=65.7
Q ss_pred HHhCchhhccCHHHHHHHHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHhcC
Q 000329 266 LSNHVSLFRMLVSYEQVLRHQICSLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVKVTF 345 (1653)
Q Consensus 266 L~n~~~~F~~hpel~~llr~~lc~lLi~~ls~n~~~~~~~~~~~F~~~~lRi~~~Li~~~~~~L~~E~EvfLs~Li~~l~ 345 (1653)
++.-..+-.=.|+|.+-.+.++||+++..+..+++ .|+...++.-+|--+++ -....+..+|.++..|+.+++
T Consensus 551 mE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~------DP~V~~~~qd~f~el~q-~~~~~g~m~e~~iPslisil~ 623 (1005)
T KOG2274|consen 551 MEALSSVVKLDPEFAASMESKICPLTINLFLKYSE------DPQVASLAQDLFEELLQ-IAANYGPMQERLIPSLISVLQ 623 (1005)
T ss_pred HHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcC------CchHHHHHHHHHHHHHH-HHHhhcchHHHHHHHHHHHHc
Confidence 33333455567999999999999999998877653 56554455555555544 334668899999999999986
Q ss_pred CC---CCHHHHHHHHHHHHHHh
Q 000329 346 LD---LPLWHRILVLEILRGFC 364 (1653)
Q Consensus 346 ~~---~~~w~r~L~LEvl~~l~ 364 (1653)
.+ .|.-.-.++++++.-+.
T Consensus 624 ~~~~~~~~~l~~~aidvLttvv 645 (1005)
T KOG2274|consen 624 LNADKAPAGLCAIAIDVLTTVL 645 (1005)
T ss_pred CcccccCchhhHHHHHHHHHHH
Confidence 43 35566778888887543
No 51
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=31.96 E-value=2.4e+02 Score=28.04 Aligned_cols=27 Identities=41% Similarity=0.497 Sum_probs=21.7
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHHHHHH
Q 000329 977 VFSLLKKLGADERPEVRNSAIRTLFQTL 1004 (1653)
Q Consensus 977 LL~~L~~L~~D~R~EVRn~AIqTLfril 1004 (1653)
+|..|.+++.|+.+.||++| +.|=|.+
T Consensus 69 IF~~L~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 69 IFDALCKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence 56788899999999999999 5555544
No 52
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=29.29 E-value=1e+03 Score=28.38 Aligned_cols=160 Identities=13% Similarity=0.055 Sum_probs=83.7
Q ss_pred hhhhHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHhhhhhhccCCcccccccccC
Q 000329 970 RDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELG 1049 (1653)
Q Consensus 970 ~~~LW~~LL~~L~~L~~D~R~EVRn~AIqTLfril~~~G~~ls~~~W~~~~~~VLFPLld~l~~~~~~~~~~~~~~~~~~ 1049 (1653)
....|-.++=.+-.+.-|..+++|-.+++.|..++..-.. ..|..+.+.-++.+|++.....-
T Consensus 113 i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~----~~~~~L~~tGl~~v~~~al~~~L------------- 175 (282)
T PF10521_consen 113 ISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPA----AEWDILRRTGLFSVFEDALFPCL------------- 175 (282)
T ss_pred HHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCCh----hhhHHHHHcChHHHHHHHHHHHh-------------
Confidence 3455655666677788899999999999999999974322 12555555444544444432110
Q ss_pred cCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhhh--cccCchHHHHHH-HHHHHHHHHcCCchHHHHHHH
Q 000329 1050 TRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFL--ANLSNFWTGWES-LLHFVKNSILNGSKEVSLAAI 1126 (1653)
Q Consensus 1050 ~~~~~~~~~~ihhsr~t~~k~W~ET~vlaL~gl~~lf~~~~~~L--~~~~~F~~~W~~-LL~~~~~~i~~~~~els~a~~ 1126 (1653)
.+...-|...+..+-...+...+.+++..-+..= .....+.+...+ +|..+..........+..+.+
T Consensus 176 ----------~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll 245 (282)
T PF10521_consen 176 ----------YYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLL 245 (282)
T ss_pred ----------hcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHH
Confidence 0000011113333444445555555554433110 011122233222 333333333333578888889
Q ss_pred HHHHHHHhhhcCCCCCChhhHHHHHHHHHHhhc
Q 000329 1127 NCLQTTVLSHSTKGNLPVAYLNSVLDVYEYALQ 1159 (1653)
Q Consensus 1127 ~~L~~lL~~~~~~~~~~~~~~~~~~~~w~~~~~ 1159 (1653)
+.+..++..++.. .-...+...-++..+..
T Consensus 246 ~~l~~~i~~lGi~---~~~hL~rii~~l~~~l~ 275 (282)
T PF10521_consen 246 QQLPPIIDELGIS---SVKHLQRIIPVLSQILE 275 (282)
T ss_pred HHHHHHHHHhccH---HHHHHHHHHHHHHHHhc
Confidence 9999988876532 13455555555554433
No 53
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.74 E-value=1.6e+03 Score=30.36 Aligned_cols=262 Identities=17% Similarity=0.209 Sum_probs=153.3
Q ss_pred hcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhcchhhhHHHHHHhccHH-HHhccCCcHHHHHHHHH
Q 000329 748 ADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLR-VLYFSTQSTDVRAGTLK 826 (1653)
Q Consensus 748 ~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~-~L~~~~~~~dVr~~iL~ 826 (1653)
.-+|++.+|..|-+.|.++... .|. .|+.-+. .|...+...++|...-=
T Consensus 10 tlSpD~n~~~~Ae~~l~~~~~~-----------------------------nf~-~F~~~Ls~vl~n~~~~~~~R~~AGL 59 (859)
T KOG1241|consen 10 TLSPDQNVRKRAEKQLEQAQSQ-----------------------------NFP-QFLVLLSEVLANDNSSDVARMAAGL 59 (859)
T ss_pred HcCCCcchHHHHHHHHHHHHhc-----------------------------cHH-HHHHHHHHHHhccCCcHHHHHHHhH
Confidence 4567888888888877775431 122 1222333 33333445566665555
Q ss_pred HHHHHHHhcCCccC----CChHHHH--------HHHhhhhhccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHHHHHH
Q 000329 827 ILLHVLERCGEKLH----YSWPSIL--------ELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGA 894 (1653)
Q Consensus 827 ~L~~iL~~~g~~L~----sgW~~If--------~IL~~~~~~~~~~lv~~aF~~LqlI~~dfL~~Lp~~~~~~lV~~L~~ 894 (1653)
.||+-|..+....+ +-|--+= ..+..+-...++..-..|=+++-.|.. -.||.+..+.++.++.+
T Consensus 60 ~LKN~L~akd~~~k~~~~qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~---~ElP~n~wp~li~~lv~ 136 (859)
T KOG1241|consen 60 QLKNSLTAKDPERKQQYQQRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIAC---IELPQNQWPELIVTLVS 136 (859)
T ss_pred HHhhhhccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHH---hhCchhhCHHHHHHHHH
Confidence 67777766655443 3454221 111111111245566678888888875 24788999999999999
Q ss_pred HHhcCCCc---chhHHHHHHHHHHHHHHHcccCCCchhhHhhhhcccCCCccccCcchhhhhhcccccccCCCCCcchhh
Q 000329 895 YSSQKTEL---NISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRD 971 (1653)
Q Consensus 895 F~~q~~dl---NISLtAi~~lW~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~ 971 (1653)
-+.+..-. .-+|.|+|++ -+... + + .+. ...+
T Consensus 137 nv~~~~~~~~k~~slealGyi-------ce~i~---p---e-----------vl~---------------------~~sN 171 (859)
T KOG1241|consen 137 NVGEEQASMVKESSLEALGYI-------CEDID---P---E-----------VLE---------------------QQSN 171 (859)
T ss_pred hcccccchHHHHHHHHHHHHH-------HccCC---H---H-----------HHH---------------------HHHh
Confidence 88776555 4577888875 22111 1 0 000 0012
Q ss_pred hhHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHhhhhhhccCCcccccccccCcC
Q 000329 972 KLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTR 1051 (1653)
Q Consensus 972 ~LW~~LL~~L~~L~~D~R~EVRn~AIqTLfril~~~G~~ls~~~W~~~~~~VLFPLld~l~~~~~~~~~~~~~~~~~~~~ 1051 (1653)
.....+..+. ....+-..||=.|...|...+.--+..|..+.=...+-+|+- +. +.+ .
T Consensus 172 ~iLtaIv~gm--rk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvc-------Ea--tq~------~----- 229 (859)
T KOG1241|consen 172 DILTAIVQGM--RKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVC-------EA--TQS------P----- 229 (859)
T ss_pred HHHHHHHhhc--cccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeee-------ec--ccC------C-----
Confidence 2222222222 224566789999999999999876666665443333221110 10 111 1
Q ss_pred CCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 000329 1052 GGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQT 1131 (1653)
Q Consensus 1052 ~~~~~~~~ihhsr~t~~k~W~ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~LL~~~~~~i~~~~~els~a~~~~L~~ 1131 (1653)
=.+-++-|++.++|+..-||+.+.. .+.+ .++..--..|++++++|+..+++.-.+
T Consensus 230 -------------------d~~i~~aa~~ClvkIm~LyY~~m~~--yM~~---alfaitl~amks~~deValQaiEFWst 285 (859)
T KOG1241|consen 230 -------------------DEEIQVAAFQCLVKIMSLYYEFMEP--YMEQ---ALFAITLAAMKSDNDEVALQAIEFWST 285 (859)
T ss_pred -------------------cHHHHHHHHHHHHHHHHHHHHHHHH--HHHH---HHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 1267788999999999999987753 2222 366666677889999999999988776
Q ss_pred HH
Q 000329 1132 TV 1133 (1653)
Q Consensus 1132 lL 1133 (1653)
+-
T Consensus 286 ic 287 (859)
T KOG1241|consen 286 IC 287 (859)
T ss_pred HH
Confidence 54
No 54
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=27.52 E-value=1.4e+02 Score=29.57 Aligned_cols=70 Identities=13% Similarity=0.222 Sum_probs=51.7
Q ss_pred HHhccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCccCCChHHHHHHHhhhhhccchhHHHHHHHHHHHHHh
Q 000329 803 AVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMN 874 (1653)
Q Consensus 803 ~ll~pl~~L~~~~~~~dVr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~~~~~~~~~lv~~aF~~LqlI~~ 874 (1653)
.++.|+... ....+..||....|+|.+|....+..+-..-..||..|.....+.++ -|+.|-+.|...+.
T Consensus 27 ~Il~pVL~~-~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~-~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 27 EILPPVLKC-FDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDE-NVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHH-cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhc
Confidence 456676655 35678899999999999999887776656778888888776665554 47777777765543
No 55
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=27.01 E-value=1.6e+02 Score=29.05 Aligned_cols=69 Identities=13% Similarity=0.060 Sum_probs=48.4
Q ss_pred HHHHHHhhcChhHHHHHHHHHHHHhCCCCC-CcccCchhHHHHHHHHhcCCCchhHHHHHHHHHHHHhcC
Q 000329 13 ALSAEARRRYPAVKDGAEHAILKLRSLSSP-SELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHD 81 (1653)
Q Consensus 13 ~L~~EskRK~~~lk~A~e~al~~Lk~~~~~-~~~~~~~~~l~PfllaC~skn~kl~~iaL~~lqkLi~~~ 81 (1653)
.|..-.+..++++|+.+=.++..+-..... ........++.+++-...+++.++...|+.+|..|....
T Consensus 11 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 11 ALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 344445566788998888888887654221 111223467777777777889999999999999997654
No 56
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=25.00 E-value=1e+03 Score=28.91 Aligned_cols=116 Identities=19% Similarity=0.288 Sum_probs=76.4
Q ss_pred HhccHHHHhccCCcHHHHH-HHHHHHHHHHHhcCCccCCChHHHHHHH-hhhh----h--ccchhHHHHHHHHHHHHHhc
Q 000329 804 VISPLRVLYFSTQSTDVRA-GTLKILLHVLERCGEKLHYSWPSILELL-RSVA----D--ASEKDLITLGFQSLRFIMND 875 (1653)
Q Consensus 804 ll~pl~~L~~~~~~~dVr~-~iL~~L~~iL~~~g~~L~sgW~~If~IL-~~~~----~--~~~~~lv~~aF~~LqlI~~d 875 (1653)
++.++..-|..+ .++.|+ .+|.++..++.+-++.+...=+.|++.+ ..+- + ...++.-..=|.-++-|+..
T Consensus 72 l~~~vL~DY~~~-~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~ 150 (319)
T PF08767_consen 72 LLDAVLGDYQNS-VPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEH 150 (319)
T ss_dssp HHHHHHHHHHHS--GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHH
Confidence 334444445543 233333 3577888888888887776666666433 2221 1 13466777777888888876
Q ss_pred cCC---CCChhhHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHc
Q 000329 876 GLS---SIPTDCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAK 921 (1653)
Q Consensus 876 fL~---~Lp~~~~~~lV~~L~~F~~q~~dlNISLtAi~~lW~isD~L~~ 921 (1653)
.++ .+|++.|..+++++ .+|-+..+-+|+-+++..+-.+-+.+.+
T Consensus 151 ~f~~l~~lp~~~f~~~idsi-~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 151 CFPALLQLPPEQFKLVIDSI-VWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HTHHHHHS-HHHHHHHHHHH-HHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHcCCHHHHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 544 48999999999999 6777777999999998888776666664
No 57
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=24.71 E-value=9.2e+02 Score=26.18 Aligned_cols=100 Identities=16% Similarity=0.033 Sum_probs=65.3
Q ss_pred HHHHHHhCchhhccC-HHHHHHHHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHHHHHHH-HhhhHhHHHHHHHH
Q 000329 262 LEFILSNHVSLFRML-VSYEQVLRHQICSLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLY-SSSLITECEVFLSM 339 (1653)
Q Consensus 262 lesvL~n~~~~F~~h-pel~~llr~~lc~lLi~~ls~n~~~~~~~~~~~F~~~~lRi~~~Li~~~-~~~L~~E~EvfLs~ 339 (1653)
|-+.|.+++.+-... ....+-++.++-.+| +++.. ..-+. -+.++-.++..- ...|...++.++..
T Consensus 4 ll~~l~~~~~~~~~~~~~~l~~l~~ri~~LL----~s~~~------~~rw~--G~~Ll~~~~~~~~~e~l~~~~~~W~~~ 71 (165)
T PF08167_consen 4 LLSTLRSCGLLLSAPSKSALHKLVTRINSLL----QSKSA------YSRWA--GLCLLKVTVEQCSWEILLSHGSQWLRA 71 (165)
T ss_pred HHHHHHccchhhcccCHHHHHHHHHHHHHHh----CCCCh------hhHHH--HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344566666665554 566667777766666 44211 11121 344444444443 57888999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHh----cChHHHHHH
Q 000329 340 LVKVTFLDLPLWHRILVLEILRGFC----VEARTLRLL 373 (1653)
Q Consensus 340 Li~~l~~~~~~w~r~L~LEvl~~l~----~dp~ll~~i 373 (1653)
++++|+.+.|.--+..+...+..|+ .-|++.|++
T Consensus 72 Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei 109 (165)
T PF08167_consen 72 LLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREI 109 (165)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence 9999988777777778888887774 567777666
No 58
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=23.60 E-value=1.3e+03 Score=27.45 Aligned_cols=67 Identities=12% Similarity=0.149 Sum_probs=46.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhhc
Q 000329 1067 AQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHS 1137 (1653)
Q Consensus 1067 ~~k~W~ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~LL~~~~~~i~~~~~els~a~~~~L~~lL~~~~ 1137 (1653)
+.+.|...-..+...+.-+... -.+.+...+.|..++=.+-.++...+.++-..|..+|+.++....
T Consensus 85 ~~~~WK~~~~~~~~~l~w~v~~----~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~ 151 (282)
T PF10521_consen 85 QRQPWKSNPGLASHVLSWIVLS----QLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVP 151 (282)
T ss_pred ccCCcccCCcccHHHHHHHHHh----cCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCC
Confidence 4578987654442222222221 122355667888888888888888899999999999999997654
No 59
>KOG1766 consensus Enhancer of rudimentary [General function prediction only]
Probab=23.49 E-value=1.2e+02 Score=29.42 Aligned_cols=48 Identities=13% Similarity=0.302 Sum_probs=33.0
Q ss_pred hhhhHH--HHHHHHHHHHHHHHHhhhhhhccc-CchHHHHHHHHHHHHHHH
Q 000329 1067 AQKQWD--ETLVLVLGGIARLLRSFFPFLANL-SNFWTGWESLLHFVKNSI 1114 (1653)
Q Consensus 1067 ~~k~W~--ET~vlaL~gl~~lf~~~~~~L~~~-~~F~~~W~~LL~~~~~~i 1114 (1653)
+...|- |+...++.|++++|..|+...... +.-.---..|.+|+..+.
T Consensus 15 esRT~~DYesv~e~megiCk~yEe~Lkk~nPs~~~ITYDIsqlfeFiD~L~ 65 (104)
T KOG1766|consen 15 ESRTWGDYESVTECMEGICKMYEEHLKKKNPSAPPITYDISQLFEFIDDLA 65 (104)
T ss_pred ccccccchHhHHHHHHHHHHHHHHHHHhcCCCCCCcceeHHHHHHHHHHHh
Confidence 335675 899999999999999999876432 222222356777777643
No 60
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=23.44 E-value=2.2e+03 Score=30.06 Aligned_cols=215 Identities=15% Similarity=0.102 Sum_probs=126.5
Q ss_pred HHHHHHH-HhcCCCchhHHHHHHHHHHHHhcC--CCCc------chHHHHHHHHH---cccCCCCchHHHHHHHHHHHHH
Q 000329 51 ILRIFLM-ACEVRTVKLSVIGLSCIQKLISHD--AVAP------SALKEIFSMLK---NHADMVDESVQLKTLQTILIIF 118 (1653)
Q Consensus 51 ~l~Pfll-aC~skn~kl~~iaL~~lqkLi~~~--~i~~------~~l~~Il~~l~---~~~~~~~e~vqLKILQ~L~~l~ 118 (1653)
.+.|.+. |....-.|++.-||--.|+|+.+= .=++ .-+..+.+... .+.+ .|-.|..+-+-++-.++
T Consensus 520 ~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d-~DqeVkeraIscmgq~i 598 (1233)
T KOG1824|consen 520 ALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATD-SDQEVKERAISCMGQII 598 (1233)
T ss_pred hhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHH
Confidence 3444444 445557999999999999998761 1111 12333333322 2233 34458888888888888
Q ss_pred cCCCCCCChHHHHHH-HHHHHhhhcccCChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcCCCCCcccccccccccc
Q 000329 119 QSRLHPENEDNMAQA-LGICLRLLENNRSSDSVRNTAAATFRQAVALIFDHVVRAESLPMGKFGSGAHITRTNSVTGDVS 197 (1653)
Q Consensus 119 ~s~~~~~~g~~L~~~-L~~C~~L~~~sk~~~vv~~TA~ATL~Qlv~~VF~rv~~ed~~~~~~~~~~~~~~~~~~~~~~~~ 197 (1653)
.+.+..+ |.-|..+ ..+|=+| ++. +.+-||.-++.-++++.- ..
T Consensus 599 ~~fgD~l-~~eL~~~L~il~eRl----~nE-iTRl~AvkAlt~Ia~S~l----~i------------------------- 643 (1233)
T KOG1824|consen 599 ANFGDFL-GNELPRTLPILLERL----GNE-ITRLTAVKALTLIAMSPL----DI------------------------- 643 (1233)
T ss_pred HHHhhhh-hhhhHHHHHHHHHHH----hch-hHHHHHHHHHHHHHhccc----ee-------------------------
Confidence 7753222 3333333 3344455 344 889999877766654421 00
Q ss_pred cccCCCCcccccccCCCCcchhhhhhhhhHHHHHHHHHHHHhhcCCCCCcccccchhHHHHHHHHHHHHHhCchhhccCH
Q 000329 198 RSINHSESLEHEFASEGPSLRRETLTKAGKLGLRLLEDLTALAAGGSASWLHVNTLQRTFVLDILEFILSNHVSLFRMLV 277 (1653)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~da~~vf~dLc~L~~~e~p~~l~~~~l~k~~~LELlesvL~n~~~~F~~hp 277 (1653)
.+.+-..++|..+-+.|.- ...-.|.-.|..++..++++++.+. +
T Consensus 644 -----------------------~l~~~l~~il~~l~~flrK----------~~r~lr~~~l~a~~~L~~~~~~~~~--~ 688 (1233)
T KOG1824|consen 644 -----------------------DLSPVLTEILPELASFLRK----------NQRALRLATLTALDKLVKNYSDSIP--A 688 (1233)
T ss_pred -----------------------ehhhhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhcccc--H
Confidence 1122223456544444431 1122445556677788888888876 5
Q ss_pred HHHHHHHHHHHHHHHHhhcccccCCCCCCCchHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHhcCCCC
Q 000329 278 SYEQVLRHQICSLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVKVTFLDL 348 (1653)
Q Consensus 278 el~~llr~~lc~lLi~~ls~n~~~~~~~~~~~F~~~~lRi~~~Li~~~~~~L~~E~EvfLs~Li~~l~~~~ 348 (1653)
++...+=..+-||+.-. + ....+.++-++.++...+-+.|..-.+-+|..++..+.++.
T Consensus 689 ~~~e~vL~el~~Lises-----------d-lhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spl 747 (1233)
T KOG1824|consen 689 ELLEAVLVELPPLISES-----------D-LHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPL 747 (1233)
T ss_pred HHHHHHHHHhhhhhhHH-----------H-HHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCcc
Confidence 66777777777777321 1 22234566777888888888888888889998888886643
No 61
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=22.81 E-value=3.1e+03 Score=31.62 Aligned_cols=315 Identities=15% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhcchhhhHHHHHHhc-----cHHHHhcc
Q 000329 740 VVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVIS-----PLRVLYFS 814 (1653)
Q Consensus 740 l~~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~-----pl~~L~~~ 814 (1653)
..+.|+....++++.+.+-|++.|.-+.. +..+|..+.. |+..+ -.
T Consensus 1529 ~i~~Li~lL~s~~~~vqe~aa~ll~~l~~----------------------------~~~~~~~~~~~~aI~pLv~~-l~ 1579 (2102)
T PLN03200 1529 AIEPLIPLLESPSQAVQQLAAELLSHLLA----------------------------EEHFQQDITTQNAVVPLVRL-AG 1579 (2102)
T ss_pred hHHHHHHHHcCCcHHHHHHHHHHHHHHhc----------------------------chHHhhhhhcccchHHHHHH-hc
Q ss_pred CCcHHHHHHHHHHHHHHHHhcCCccCCCh----------HHHHHHHhhhhhccchhHHHHHHHHHHHHHhccCCCCChhh
Q 000329 815 TQSTDVRAGTLKILLHVLERCGEKLHYSW----------PSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDC 884 (1653)
Q Consensus 815 ~~~~dVr~~iL~~L~~iL~~~g~~L~sgW----------~~If~IL~~~~~~~~~~lv~~aF~~LqlI~~dfL~~Lp~~~ 884 (1653)
......|+...++| +++...| ..+.+++..+.-...-.++..|+..|.-+.. ++.. .+
T Consensus 1580 ~~~~~~~~~A~~aL--------~~~~~~w~~~v~~~ggv~~l~~~~~~~d~~~~~~l~~~a~~vl~n~~~--~~~~--~~ 1647 (2102)
T PLN03200 1580 IGILSLQQRAVKAL--------ESISLSWPKAVADAGGIFELSKVILQADPQPPHALWESAASVLSNILR--FSSE--YY 1647 (2102)
T ss_pred CCChhHHHHHHHHH--------HHhhcccHHHHHHccCHHHHHHHHHccCCCCchhhHHHHHHHHHHHhc--cCce--eE
Q ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHH--HHHHHcccCCCchhhHhhhhcccCCCccccCcchhhhhhcccccccC
Q 000329 885 IHECVDVTGAYSSQKTELNISLTAVGLLWTT--TDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQN 962 (1653)
Q Consensus 885 ~~~lV~~L~~F~~q~~dlNISLtAi~~lW~i--sD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~l~~~~~ 962 (1653)
|..-|-+|.+....+ +...-..|+.++-.+ .|.=...
T Consensus 1648 ~~v~~~~lvkl~~s~-~e~~~~~a~~~l~~~~~~d~~~~~---------------------------------------- 1686 (2102)
T PLN03200 1648 FEVPVAVLVKLLRST-SESTVVVALNALLVLERDDSSSAE---------------------------------------- 1686 (2102)
T ss_pred EEeeHHHHHHHHhcc-chhHHHHHHHHHHHHHhcchhHHH----------------------------------------
Q ss_pred CCCCcchhhhhHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHh-----------HHHHHHh
Q 000329 963 HSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHG-QKLSESMWEDCLWNY-----------VFPMLDC 1030 (1653)
Q Consensus 963 ~~~~~~~~~~LW~~LL~~L~~L~~D~R~EVRn~AIqTLfril~~~G-~~ls~~~W~~~~~~V-----------LFPLld~ 1030 (1653)
.-++.|||+.|.+.+.+|- .....-.-+.+|+++ +-|+=+.
T Consensus 1687 ---------------------------~~~~~g~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1739 (2102)
T PLN03200 1687 ---------------------------QMAESGAIEALLELLRSHQCEEAAARLLEALFNNVKVREMKATKYAIAPLSQY 1739 (2102)
T ss_pred ---------------------------HHHHhhhHHHHHHHHHhccchhHHHHHHHHHhcCcchhhhhhHHHhcCcHHHH
Q ss_pred hhhhhccCCcccccccccCcCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCchHHHHHHHHHHH
Q 000329 1031 ASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFV 1110 (1653)
Q Consensus 1031 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ihhsr~t~~k~W~ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~LL~~~ 1110 (1653)
+..++ .+-..-+.++--.++++| ..+.|....++..+-..+...+
T Consensus 1740 ~~~~~---------------------------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 1784 (2102)
T PLN03200 1740 LLDPQ---------------------------------TRSQQARLLAALALGDLF--QHEGLARSTDAVSACRALVSLL 1784 (2102)
T ss_pred hcCcc---------------------------------cccHHHHHHHHHHhccch--hhhhhhhccCcHHHHHHHHHHh
Q ss_pred HHHHcCCchHHHHHHHHHHHHHHhhhcCC-----------------CCCChhhHHHHHHHHHHhhcCCCCCCCCCCcchh
Q 000329 1111 KNSILNGSKEVSLAAINCLQTTVLSHSTK-----------------GNLPVAYLNSVLDVYEYALQKSPNYSDNAAGKVK 1173 (1653)
Q Consensus 1111 ~~~i~~~~~els~a~~~~L~~lL~~~~~~-----------------~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 1173 (1653)
+. +...|+...++-.|||++....++ ..-+.+.-.++--+..-++..++- .....
T Consensus 1785 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 1856 (2102)
T PLN03200 1785 ED---QPTEEMKMVAICALQNLVMHSRTNKRAVAEAGGVQVVQELLLSSNPDTSGQAALLIKLLFSNHTI-----QEYAS 1856 (2102)
T ss_pred cc---CchHHHHHHHHHHHHHHHHhccchHHHHHHccchhHHHHHHcCCCccHHHHHHHHHHHHHccchH-----HHHHH
Q ss_pred HHHHHHHHHHHH---HHHhhCCHHHHHHHHHHHHHH
Q 000329 1174 QEILHGLGELYV---QAQKMFDDRMYGQLLAIIDLA 1206 (1653)
Q Consensus 1174 q~~l~~f~~ly~---~~~~~~~~~~~~~~l~~l~~~ 1206 (1653)
.|.+++...... -.....+.+-++.+..+|..|
T Consensus 1857 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1892 (2102)
T PLN03200 1857 SELIRALTAALEKDLWSTATVNEEVLRALNVLFSNF 1892 (2102)
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHhcC
No 62
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=21.49 E-value=4.7e+02 Score=31.84 Aligned_cols=116 Identities=16% Similarity=0.153 Sum_probs=75.6
Q ss_pred CCcHHHHHHHHHHHHHHHH-hccCCCCHHHHHHHHHHhHHHHHHhhhhhhccCCcccccccccCcCCCccchhhcccccc
Q 000329 987 DERPEVRNSAIRTLFQTLG-SHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRN 1065 (1653)
Q Consensus 987 D~R~EVRn~AIqTLfril~-~~G~~ls~~~W~~~~~~VLFPLld~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ihhsr~ 1065 (1653)
+.-|+.|..-+=.++.++. ..|+.+.+ .-..++..|.-|.++=+.+. .
T Consensus 82 ~~~p~~r~~evL~l~~~ii~kl~~~~~~-~v~~I~~~vf~~Tl~MI~~d----------~-------------------- 130 (319)
T PF08767_consen 82 NSVPDAREPEVLSLMATIINKLGELIQP-QVPQILEAVFECTLPMINKD----------F-------------------- 130 (319)
T ss_dssp HS-GGGS-HHHHHHHHHHHHHHGGGCCC-CHHHHHHHHHHHHHHHHSST----------S--------------------
T ss_pred cCCccccChhHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHhh----------h--------------------
Confidence 3567777776666666554 56655554 23456666666666644211 0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhhcC
Q 000329 1066 TAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHST 1138 (1653)
Q Consensus 1066 t~~k~W~ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~LL~~~~~~i~~~~~els~a~~~~L~~lL~~~~~ 1138 (1653)
.+.-|-++--.+.+..+...+|+.+..++ .+.+..+++.+...+.....+++..+++.+.+++.....
T Consensus 131 ---~~yPe~r~~ff~LL~~i~~~~f~~l~~lp--~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 131 ---EEYPEHRVNFFKLLRAINEHCFPALLQLP--PEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp ---SSSHHHHHHHHHHHHHHHHHHTHHHHHS---HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred ---hhChHHHHHHHHHHHHHHHHhHHHHHcCC--HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 11225555556666777777787776554 245677999999999999999999999999999976554
No 63
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=21.26 E-value=5.6e+02 Score=27.56 Aligned_cols=103 Identities=15% Similarity=0.189 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHhcC--Ccc-CCChHHHHHHHhhhhh-cc----------ch------hHHHHHHHHHHHHHhccCC
Q 000329 819 DVRAGTLKILLHVLERCG--EKL-HYSWPSILELLRSVAD-AS----------EK------DLITLGFQSLRFIMNDGLS 878 (1653)
Q Consensus 819 dVr~~iL~~L~~iL~~~g--~~L-~sgW~~If~IL~~~~~-~~----------~~------~lv~~aF~~LqlI~~dfL~ 878 (1653)
.=|...|+-|.+++.... ..+ ..+|..||+.|-.... ++ .. .=...+-.+|++++.-..+
T Consensus 19 keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL~~~a~~lR~~ve~~~~ 98 (155)
T PF11640_consen 19 KERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIEKEKEAYSRKKSSSASTATTAESRLSSCASALRLFVEKSNS 98 (155)
T ss_pred chHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446677777888887653 455 4699999977744322 10 01 1245677889999999999
Q ss_pred CCChhhHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHc
Q 000329 879 SIPTDCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAK 921 (1653)
Q Consensus 879 ~Lp~~~~~~lV~~L~~F~~q~~dlNISLtAi~~lW~isD~L~~ 921 (1653)
.++...+..+|+.+........+--..--+..+...+.+.|..
T Consensus 99 ~~k~kt~~~Ll~hI~~~l~~~~~~~~~p~~~Dy~k~L~~iL~~ 141 (155)
T PF11640_consen 99 RLKRKTVKALLDHITDLLPDPDDSLLEPLSLDYSKILKAILSY 141 (155)
T ss_pred hcccchHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHCC
Confidence 9998888888888888777664333333355666655555553
No 64
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=20.96 E-value=5.7e+02 Score=23.79 Aligned_cols=54 Identities=11% Similarity=0.118 Sum_probs=41.9
Q ss_pred HHHHH-hhcChhHHHHHHHHHHHHhCCCCCCcccCchhHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 000329 14 LSAEA-RRRYPAVKDGAEHAILKLRSLSSPSELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKL 77 (1653)
Q Consensus 14 L~~Es-kRK~~~lk~A~e~al~~Lk~~~~~~~~~~~~~~l~PfllaC~skn~kl~~iaL~~lqkL 77 (1653)
|..-. +-+++.+|..+=+++..+ ..++.+.+++-.++++++.+-..|+.+|.++
T Consensus 4 L~~~l~~~~~~~vr~~a~~~L~~~----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 4 LLQLLQNDPDPQVRAEAARALGEL----------GDPEAIPALIELLKDEDPMVRRAAARALGRI 58 (88)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHCC----------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 44444 467899998877777732 3457888888888999999999999999876
No 65
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=20.53 E-value=1e+03 Score=30.28 Aligned_cols=113 Identities=22% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHhhhhhhccCCcccccccccCcCCCcc
Q 000329 976 AVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKA 1055 (1653)
Q Consensus 976 ~LL~~L~~L~~D~R~EVRn~AIqTLfril~~~G~~ls~~~W~~~~~~VLFPLld~l~~~~~~~~~~~~~~~~~~~~~~~~ 1055 (1653)
.+...|..+..++|.+=|++|++-|...+..-+ |+- |+.+|.++|.-+|+.+........+
T Consensus 287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~s--fsv--Weq~f~~iL~~l~EvL~d~~~~~~k--------------- 347 (516)
T KOG2956|consen 287 LVADLLKEISGSERASERKEALSELPKMLCEGS--FSV--WEQHFAEILLLLLEVLSDSEDEIIK--------------- 347 (516)
T ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHHccc--hhH--HHHHHHHHHHHHHHHHccchhhHHH---------------
Q ss_pred chhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 000329 1056 VHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTT 1132 (1653)
Q Consensus 1056 ~~~~ihhsr~t~~k~W~ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~LL~~~~~~i~~~~~els~a~~~~L~~l 1132 (1653)
.+||+-+.++..+-=..| |+..=..+-..++..-......+..|+-.|+..+
T Consensus 348 --------------------~laLrvL~~ml~~Q~~~l-----~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~l 399 (516)
T KOG2956|consen 348 --------------------KLALRVLREMLTNQPARL-----FDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTL 399 (516)
T ss_pred --------------------HHHHHHHHHHHHhchHhh-----hchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
No 66
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=20.19 E-value=9.2e+02 Score=28.35 Aligned_cols=128 Identities=13% Similarity=0.128 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhh-cChhHHHHHHHHHHHHhCCCCCCcccCchhHHHHHHHHhcCCCchhHHHHHHHHHHHHhcCCCCcch
Q 000329 9 SDLRALSAEARR-RYPAVKDGAEHAILKLRSLSSPSELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAPSA 87 (1653)
Q Consensus 9 ~dL~~L~~EskR-K~~~lk~A~e~al~~Lk~~~~~~~~~~~~~~l~PfllaC~skn~kl~~iaL~~lqkLi~~~~i~~~~ 87 (1653)
.+|+.|+.--+. +.|.+++.+--++......+...+..+.-..+.++.--..++++++-.-|+.+|..|-... =....
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~-en~~~ 90 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVND-ENQEQ 90 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCCh-hhHHH
Confidence 578888877664 5799999999999998776665556666667777777788899999999999998763321 11112
Q ss_pred ----HHHHHHHHHcccCCCCchHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHhhhc
Q 000329 88 ----LKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQALGICLRLLE 142 (1653)
Q Consensus 88 ----l~~Il~~l~~~~~~~~e~vqLKILQ~L~~l~~s~~~~~~g~~L~~~L~~C~~L~~ 142 (1653)
+.+|.+.+..+ .. +..+|+--|+.|..+-.+. -+-..+.+.+.-+++|..
T Consensus 91 Ik~~i~~Vc~~~~s~-~l-ns~~Q~agLrlL~nLtv~~---~~~~~l~~~i~~ll~LL~ 144 (254)
T PF04826_consen 91 IKMYIPQVCEETVSS-PL-NSEVQLAGLRLLTNLTVTN---DYHHMLANYIPDLLSLLS 144 (254)
T ss_pred HHHHHHHHHHHHhcC-CC-CCHHHHHHHHHHHccCCCc---chhhhHHhhHHHHHHHHH
Confidence 34444433322 22 3368999999999884432 123457777777788743
Done!