Query 000329
Match_columns 1653
No_of_seqs 298 out of 728
Neff 7.3
Searched_HMMs 29240
Date Tue Mar 26 17:19:18 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000329.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_107-111//hhsearch_pdb/000329hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1r8s_E ARNO; protein transport 1.0 1 1 60.8 2.2 33 438-470 102-152 (203)
2 3ltl_A Brefeldin A-inhibited g 1.0 1 1 59.1 2.5 32 438-469 108-159 (211)
3 1ku1_A ARF guanine-nucleotide 1.0 1 1 56.6 1.2 19 438-456 113-131 (230)
4 2r09_A Cytohesin-3; autoinhibi 1.0 1 1 53.9 2.2 33 438-470 104-154 (347)
5 1xsz_A Guanine nucleotide exch 1.0 1 1 43.2 3.6 33 438-470 100-150 (356)
6 2qk2_A LP04448P; mini spindles 1.0 1 1 36.0 18.0 60 815-874 68-127 (242)
7 1u6g_C TIP120 protein, CAND1; 1.0 1 1 35.2 22.0 149 11-162 8-162 (1230)
8 1b3u_A Protein (protein phosph 1.0 1 1 34.7 21.2 14 1623-1636 570-583 (588)
9 1b3u_A Protein (protein phosph 1.0 1 1 34.6 21.6 17 987-1003 530-546 (588)
10 1ibr_B P95, importin beta-1 su 1.0 1 1 33.3 21.6 160 735-919 124-290 (462)
No 1
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A
Probab=1.00 E-value=1 Score=60.79 Aligned_cols=33 Identities=15% Similarity=0.288 Sum_probs=27.8
Q ss_pred CCCCCHHHHHHHHHHHHHH------------------HHHHHHHHCCCCCC
Q ss_conf 5686412048899999998------------------99999761111122
Q 000329 438 VLVASEAHSITLAIEGLLG------------------VVFTVATLTDEAVD 470 (1653)
Q Consensus 438 ~ll~~Ea~~I~~~~e~la~------------------~i~sv~~L~~~~~~ 470 (1653)
..+|||+|+|+|++|.|++ ++|+++||||+..+
T Consensus 102 f~LPgEaQ~IdRile~Fa~ry~~~Np~~f~s~D~~~vLaySiImLNTDlHn 152 (203)
T 1r8s_E 102 FRLPGKAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYVLSYSVIMLNTDLHN 152 (203)
T ss_dssp SCCCSSHHHHHHHHHHHHHHHHHHSTTSSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 617871689999999999999984976567811679999899886510047
No 2
>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} SCOP: a.118.3.0 PDB: 3l8n_A 3swv_A
Probab=1.00 E-value=1 Score=59.14 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHHHHHHHH--------------------HHHHHHHHCCCCC
Q ss_conf 5686412048899999998--------------------9999976111112
Q 000329 438 VLVASEAHSITLAIEGLLG--------------------VVFTVATLTDEAV 469 (1653)
Q Consensus 438 ~ll~~Ea~~I~~~~e~la~--------------------~i~sv~~L~~~~~ 469 (1653)
..+|||+|+|+|++|.|++ ++|+++||||+..
T Consensus 108 f~LPgEaQ~IdRile~Fa~ry~~~Np~~~~f~s~D~~~iLaySiImLNTDlH 159 (211)
T 3ltl_A 108 FRLPGEAQKIDRLMEKFAARYLECNQGQTLFASADTAYVLAYSIIMLTTDLH 159 (211)
T ss_dssp SCCCSSHHHHHHHHHHHHHHHHHTCTTCCSCSSHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 7179842699999999999999858887774788899999999999856414
No 3
>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B*
Probab=1.00 E-value=1 Score=56.57 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=15.8
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q ss_conf 5686412048899999998
Q 000329 438 VLVASEAHSITLAIEGLLG 456 (1653)
Q Consensus 438 ~ll~~Ea~~I~~~~e~la~ 456 (1653)
..+|||+|+|+|++|.|++
T Consensus 113 f~LPGEaQ~IdRile~Fa~ 131 (230)
T 1ku1_A 113 FRLPGESQQIERIIEAFSS 131 (230)
T ss_dssp CCCCSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
T ss_conf 8588519999999999999
No 4
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=1.00 E-value=1 Score=53.92 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=26.0
Q ss_pred CCCCCHHHHHHHHHHHHHH------------------HHHHHHHHCCCCCC
Q ss_conf 5686412048899999998------------------99999761111122
Q 000329 438 VLVASEAHSITLAIEGLLG------------------VVFTVATLTDEAVD 470 (1653)
Q Consensus 438 ~ll~~Ea~~I~~~~e~la~------------------~i~sv~~L~~~~~~ 470 (1653)
..+|||+|+|+|++|.||+ ++|+++|||++..+
T Consensus 104 f~lpgE~q~idril~~Fa~~y~~~np~~~~~~d~~~~l~~siimLntdlhn 154 (347)
T 2r09_A 104 FRLPGEAQKIDRMMEAFASRYCLCNPGVFQSTDTCYVLSFAIIMLNTSLHN 154 (347)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHSTTSSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 868972678999999999999985986567854899999999997056405
No 5
>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B
Probab=1.00 E-value=1 Score=43.15 Aligned_cols=33 Identities=18% Similarity=0.343 Sum_probs=27.6
Q ss_pred CCCCCHHHHHHHHHHHHHH------------------HHHHHHHHCCCCCC
Q ss_conf 5686412048899999998------------------99999761111122
Q 000329 438 VLVASEAHSITLAIEGLLG------------------VVFTVATLTDEAVD 470 (1653)
Q Consensus 438 ~ll~~Ea~~I~~~~e~la~------------------~i~sv~~L~~~~~~ 470 (1653)
..+|||+|+|+|++|.|++ ++|+++||||+..+
T Consensus 100 frLPGEaQ~IDRile~FA~rY~~~Np~~f~s~D~~yvLaySiImLNTDLHN 150 (356)
T 1xsz_A 100 FKLPGEAQKIDRLVQSFSGAYFQQNPDVVSNADAAYLLAFQTIMLNTDLHN 150 (356)
T ss_dssp SCBCSSHHHHHHHHHHHHHHHHHHCTTTSSSHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 848850889999999999999973998668743899999999986210038
No 6
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=36.00 Aligned_cols=60 Identities=10% Similarity=0.007 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 874789999999999999824986577808999999561202654579999999999984
Q 000329 815 TQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMN 874 (1653)
Q Consensus 815 ~~~~eIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~~~~~~~~~lv~~aF~~LqlI~~ 874 (1653)
..+..|+...+.|+..+....|..+..-+..++..+-....++...+-..+..++.-++.
T Consensus 68 d~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~ 127 (242)
T 2qk2_A 68 DSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYA 127 (242)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 898999999999999999998661798999999999999768988999999999999997
No 7
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=35.19 Aligned_cols=149 Identities=11% Similarity=0.090 Sum_probs=81.5
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHH-HCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 99999999213935899999999998-57899983248026899999995389902699999999999802898940299
Q 000329 11 LRALSAEARRRYPAVKDGAEHAILKL-RSLSSPSELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAPSALK 89 (1653)
Q Consensus 11 L~~L~~EskRK~~~ik~A~e~al~~L-k~~~~~~~l~~~~~~l~PfllaC~tkn~Kl~~iaL~~lqkLi~~~~i~~~~l~ 89 (1653)
|..|.....--.+++|..|...|... +.-....+....+.++.+++-+...++.++-..|+.||..+.. .+++..++
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~--~~~~~~~~ 85 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVS--KVKEYQVE 85 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHT--TSCHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH--HCCHHHHH
T ss_conf 9999975589878599999999999974166578756799999999998669998999999999999997--58798999
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCC-----CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999981538898338999999999998179977-----78179999999987310246780889999999999999
Q 000329 90 EIFSMLKNHADMVDESVQLKTLQTILIIFQSRLHP-----ENEDNMAQALGICLRLLENNRSSDSVRNTAAATFRQAV 162 (1653)
Q Consensus 90 ~Il~al~~~~~~~~e~VqLKILQ~L~~l~~s~~~~-----i~g~~L~~~L~~C~~L~~~sk~~~~v~~TAaATL~Qlv 162 (1653)
.|+..++++..-.++.|+....++|-.+....... .........+...+.....+.+. .++..|-.++.+++
T Consensus 86 ~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~-~~~~~al~~l~~~~ 162 (1230)
T 1u6g_C 86 TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDV-SVQLEALDIMADML 162 (1230)
T ss_dssp HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHH
T ss_conf 999999998669838899999999999999679744444117889999999999987578846-79999999999999
No 8
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=34.73 Aligned_cols=14 Identities=21% Similarity=0.309 Sum_probs=5.3
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 60379999999999
Q 000329 1623 REARVRELVQVLLR 1636 (1653)
Q Consensus 1623 ~~~~v~~ll~~~l~ 1636 (1653)
.+.+|+.....+|.
T Consensus 570 ~d~~vr~~a~~al~ 583 (588)
T 1b3u_A 570 QDVDVKYFAQEALT 583 (588)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
T ss_conf 96669999999999
No 9
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=34.64 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=5.6
Q ss_pred CCCHHHHHHHHHHHHHH
Q ss_conf 89379999999999999
Q 000329 987 DERPEVRNSAIRTLFQT 1003 (1653)
Q Consensus 987 D~R~EVRn~AIqTLfri 1003 (1653)
|+-++||..|+.+|-++
T Consensus 530 d~~~~Vr~~a~~~l~~l 546 (588)
T 1b3u_A 530 DPVANVRFNVAKSLQKI 546 (588)
T ss_dssp CSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
T ss_conf 99862799999999999
No 10
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=1.00 E-value=1 Score=33.26 Aligned_cols=160 Identities=13% Similarity=0.144 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHCCHHHHH
Q ss_conf 56999999999975079--9669999999999999998312001141101379971222000004677999721089985
Q 000329 735 PLWDQVVGHFLELADNS--NQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLY 812 (1653)
Q Consensus 735 ~iW~~i~~hli~v~~~~--n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~ 812 (1653)
.-|+-+...++....++ +..+|..|..+|..++...-. +. ....++ .++..+...+
T Consensus 124 ~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~-~~--------------------~~~~~~-~ll~~l~~~l 181 (462)
T 1ibr_B 124 NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP-EQ--------------------LQDKSN-EILTAIIQGM 181 (462)
T ss_dssp TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCG-GG--------------------TGGGHH-HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC-HH--------------------HHHHHH-HHHHHHHHHH
T ss_conf 0269999999998626788789999999999999981871-53--------------------476799-9999999986
Q ss_pred CCCC-CHHHHHHHHHHHHHHHHHCCCCCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHH-H
Q ss_conf 0387-478999999999999982498657780---8999999561202654579999999999984149988831499-9
Q 000329 813 FSTQ-STDVRAGTLKILLHVLERCGEKLHYSW---PSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIH-E 887 (1653)
Q Consensus 813 ~~~~-~~eIr~~iL~~L~~iL~~~g~~L~sgW---~~If~IL~~~~~~~~~~lv~~aF~~LqlI~~dfL~~Lp~~~~~-~ 887 (1653)
.... +.+||...++++..+++-..+.. ..| ..++.++.....+.+.+.-..+++++..++..+...+. +.+. .
T Consensus 182 ~~~~~~~~vr~~a~~~l~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~-~~~~~~ 259 (462)
T 1ibr_B 182 RKEEPSNNVKLAATNALLNSLEFTKANF-DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME-TYMGPA 259 (462)
T ss_dssp STTCCCHHHHHHHHHHHHHHTTTTHHHH-TSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCT-TTTTTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_conf 7999989999999999999999999843-23678989999999853799789999999999999999899999-888889
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999997706888650698999999979998
Q 000329 888 CVDVTGAYSSQKTELNISLTAVGLLWTTTDFI 919 (1653)
Q Consensus 888 lV~tL~~F~~q~~dlNISLtAi~llW~isD~l 919 (1653)
++..+.... +..+.++...+++++-.+++..
T Consensus 260 l~~~~~~~~-~~~~~~v~~~a~~~l~~~~~~~ 290 (462)
T 1ibr_B 260 LFAITIEAM-KSDIDEVALQGIEFWSNVCDEE 290 (462)
T ss_dssp HHHHHHHHH-HCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999999998-2886099999999999999988
Done!