Query 000330
Match_columns 1652
No_of_seqs 117 out of 119
Neff 3.8
Searched_HMMs 29240
Date Tue Mar 26 17:55:59 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000330.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_107-111//hhsearch_pdb/000330hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 166.8 27.9 353 1012-1435 13-384 (388)
2 2xpi_A Anaphase-promoting comp 1.0 1 1 158.1 30.8 384 991-1446 82-496 (597)
3 2y4t_A DNAJ homolog subfamily 1.0 1 1 155.2 31.5 321 984-1431 17-370 (450)
4 3fp2_A TPR repeat-containing p 1.0 1 1 153.6 25.6 358 990-1446 22-399 (537)
5 2xpi_A Anaphase-promoting comp 1.0 1 1 150.2 31.5 90 1030-1136 82-174 (597)
6 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 148.0 25.1 148 1182-1339 209-364 (388)
7 2gw1_A Mitochondrial precursor 1.0 1 1 146.8 30.8 365 992-1438 5-386 (514)
8 2ooe_A Cleavage stimulation fa 1.0 1 1 146.4 30.3 378 985-1438 5-439 (530)
9 3ieg_A DNAJ homolog subfamily 1.0 1 1 145.3 30.1 313 992-1431 2-347 (359)
10 3fp2_A TPR repeat-containing p 1.0 1 1 143.7 24.8 308 986-1341 52-405 (537)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=166.77 Aligned_cols=353 Identities=12% Similarity=0.037 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH----HHHHHHHCCCCCCCCHHHHH
Q ss_conf 55999999999999829999899999999997288971289999999850998899----99999835897664123599
Q 000330 1012 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA----LWLMYINSRTPLNHRLDAYD 1087 (1652)
Q Consensus 1012 g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlekAVelnP~NY~----LwlmYInsr~slddrl~~Yd 1087 (1652)
|+++.|...+..+++.+|+++.+|+.++.++...+...++..++++|++.+|.+.. ++..|...+ .|+
T Consensus 13 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g--------~~~ 84 (388)
T 1w3b_A 13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG--------QLQ 84 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--------CHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC--------CHH
T ss_conf 999999999999998497889999999999998689999999999997619786699999999998779--------999
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCH
Q ss_conf 99999998620399993012120379999999998770689999999996305224999964230899998641277320
Q 000330 1088 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLI 1167 (1652)
Q Consensus 1088 kAI~vLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDKc~ 1167 (1652)
+|+..|.++.... |+. .+.+..+..++...|++++|+..+.+... ...... ......-..|...++-..
T Consensus 85 ~A~~~~~~al~~~-p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~-~~~~~l~~~~~~~g~~~~ 153 (388)
T 1w3b_A 85 EAIEHYRHALRLK-PDF-------IDGYINLAAALVAAGDMEGAVQAYVSALQ--YNPDLY-CVRSDLGNLLKALGRLEE 153 (388)
T ss_dssp HHHHHHHHHHHHC-TTC-------HHHHHHHHHHHHHHSCSSHHHHHHHHHHH--HCTTCT-HHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHCC-CCH-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCH-HHHHHHHHHHHHCCCHHH
T ss_conf 9999999998749-653-------99999999999985899999999999997--598968-999999999998468999
Q ss_pred HHHHHHH-------HHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHC
Q ss_conf 5688889-------998501606798620112332216899865531237889999999998886302884023433110
Q 000330 1168 FWVCCVY-------LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLR 1240 (1652)
Q Consensus 1168 AWL~~iY-------llrYrvLPGdiy~q~e~~KEAl~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ndEsla~~~~~k 1240 (1652)
|.-.+.- .......+|.+|...+...+|... +.++++.+|+.+.++..++ ..+.. .++-..+.....+
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~---~~~al~~~p~~~~~~~~lg-~~~~~-~~~~~~A~~~~~~ 228 (388)
T 1w3b_A 154 AKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHH---FEKAVTLDPNFLDAYINLG-NVLKE-ARIFDRAVAAYLR 228 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHH---HHHHHHHCTTCHHHHHHHH-HHHHT-TTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHH---HHHHHHCCCCCHHHHHHHH-HHHHH-CCCHHHHHHHHHH
T ss_conf 99999999872989789999999999985999999999---9999855988679999999-99998-5789999999999
Q ss_pred HHHHHH------HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCH
Q ss_conf 136867------789999997139799999999999939984148--989999851026875099999999829999833
Q 000330 1241 SAHCFA------VNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPG 1312 (1652)
Q Consensus 1241 t~~~tK------LN~Ir~lI~LEDse~A~~LfdklLk~~P~dveL--~L~AAyL~~K~m~~~Aisvle~AL~~~PkNa~g 1312 (1652)
+....| .++...+...++.+.++..|.++++..|.+.+. .+...+...++ .++|+..|++++...|++..
T Consensus 229 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~- 306 (388)
T 1w3b_A 229 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS-VAEAEDCYNTALRLCPTHAD- 306 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHCTTCHH-
T ss_pred HHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCCCHH-
T ss_conf 9852968789999999999986889999999999986499988999999999998699-79999999999864944499-
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 78999999999997399479999999999965010256111201110268999999999998522223322113577999
Q 000330 1313 IQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYL 1392 (1652)
Q Consensus 1313 ~~caW~QLIq~al~~~n~d~ai~L~~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~falL 1392 (1652)
+|+.++......++++.++.++++.. ... + ...+.+ ..+
T Consensus 307 ---~~~~l~~~~~~~g~~~~A~~~~~~al---------------------~~~-p-----~~~~~~-----------~~l 345 (388)
T 1w3b_A 307 ---SLNNLANIKREQGNIEEAVRLYRKAL---------------------EVF-P-----EFAAAH-----------SNL 345 (388)
T ss_dssp ---HHHHHHHHHHTTTCHHHHHHHHHHHT---------------------TSC-T-----TCHHHH-----------HHH
T ss_pred ---HHHHHHHHHHHCCCHHHHHHHHHHHH---------------------HCC-C-----CCHHHH-----------HHH
T ss_conf ---99999999998489999999999998---------------------609-8-----739999-----------779
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 9999985204989999999999711027708999999898881
Q 000330 1393 NLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLL 1435 (1652)
Q Consensus 1393 GD~Lyq~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLS 1435 (1652)
+.++.. .|++++|...|++++..+|.+ ...+.+.+..+.
T Consensus 346 ~~~~~~--~g~~~~A~~~~~~a~~~~p~~--~~a~~~lg~~~~ 384 (388)
T 1w3b_A 346 ASVLQQ--QGKLQEALMHYKEAIRISPTF--ADAYSNMGNTLK 384 (388)
T ss_dssp HHHHHT--TTCCHHHHHHHHHHHTTCTTC--HHHHHHHHHHHH
T ss_pred HHHHHH--CCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHH
T ss_conf 999998--688899999999998619997--899985999998
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=158.10 Aligned_cols=384 Identities=10% Similarity=-0.044 Sum_probs=253.1
Q ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH---
Q ss_conf 10899999999873003554455999999999999829999899999999997288971289999999850998899---
Q 000330 991 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA--- 1067 (1652)
Q Consensus 991 ~d~elWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlekAVelnP~NY~--- 1067 (1652)
.+.+.|..++..++..+ +++.|+.+|.++++.+|+. ..|+.++..|...+...++...|++++... .+..
T Consensus 82 ~~~~~~~~~~~~~~~~g-----~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 154 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQ-----QYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLYN-RSSACRY 154 (597)
T ss_dssp CHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGGG-TCHHHHH
T ss_pred HHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHCCCHHHHHHHHHHHHCCC-CCHHHHH
T ss_conf 89999999999998745-----8347999999999608993-579999999997476999999999873354-5650899
Q ss_pred -HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC--------CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf -9999983589766412359999999998620399993--------0121203799999999987706899999999963
Q 000330 1068 -LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDE--------MHASACILDLFLQMLQCFCMSGNTEKAIQRISRL 1138 (1652)
Q Consensus 1068 -LwlmYInsr~slddrl~~YdkAI~vLe~las~~~~Dr--------~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rL 1138 (1652)
++.+|...+ .+++|+.+|.++........ ......-..++..+..+|...|++++|+..+.++
T Consensus 155 ~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 226 (597)
T 2xpi_A 155 LAAFCLVKLY--------DWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEA 226 (597)
T ss_dssp HHHHHHHHTT--------CHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH--------HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9999999886--------69999999842488632232343343211235125899999889999839989999999999
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHH-----------HHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCH
Q ss_conf 05224999964230899998641277320568888-----------9998501606798620112332216899865531
Q 000330 1139 LIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCV-----------YLVIYRKLPDAVLQLLECEKELFAIDWPPVQLED 1207 (1652)
Q Consensus 1139 Eq~Al~g~sE~~lSLsKi~~YLt~sDKc~AWL~~i-----------YllrYrvLPGdiy~q~e~~KEAl~I~W~y~~vlk 1207 (1652)
.. ....+. .....-...++..++.....+... .....-...+..|...+..++|..+ +.+.++
T Consensus 227 ~~--~~p~~~-~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~---~~~~~~ 300 (597)
T 2xpi_A 227 LM--VDAKCY-EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY---LSSING 300 (597)
T ss_dssp HH--HCTTCH-HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH---HHTSTT
T ss_pred HH--HCCHHH-HHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH---HHHHHC
T ss_conf 97--293256-999999985034615678999865774234430889999999999998073139999999---987643
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHH------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHH--
Q ss_conf 237889999999998886302884023433110136------867789999997139799999999999939984148--
Q 000330 1208 DEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAH------CFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL-- 1279 (1652)
Q Consensus 1208 dEPdnalAL~smA~dYY~~~~ndEsla~~~~~kt~~------~tKLN~Ir~lI~LEDse~A~~LfdklLk~~P~dveL-- 1279 (1652)
. |.++.....++.-|+. .|+-..+.....++.. .+-..++.++...++.+.+..+|.++++..|.++..
T Consensus 301 ~-~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 377 (597)
T 2xpi_A 301 L-EKSSDLLLCKADTLFV--RSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWL 377 (597)
T ss_dssp G-GGCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred C-CCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 8-8309999999999998--468999999999999729553799999999999827777999999999851835479999
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHC
Q ss_conf 98999985102687509999999982999983378999999999997399479999999999965010256111201110
Q 000330 1280 VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLV 1359 (1652)
Q Consensus 1280 ~L~AAyL~~K~m~~~Aisvle~AL~~~PkNa~g~~caW~QLIq~al~~~n~d~ai~L~~~ff~gia~~Q~~~deALDaLr 1359 (1652)
.|...|...++ .++|+..|++++...|++.. +|+.++......+++++|+.+.++.....
T Consensus 378 ~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------- 437 (597)
T 2xpi_A 378 AVGIYYLCVNK-ISEARRYFSKSSTMDPQFGP----AWIGFAHSFAIEGEHDQAISAYTTAARLF--------------- 437 (597)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHTCHHHHHHHHHHHHHTT---------------
T ss_pred HHHHHHHHHCC-HHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHHC---------------
T ss_conf 99999998356-99999999999872977789----99999999997577799999999999868---------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 26899999999999852222332211357799999999852049899999999997110277089999998988811788
Q 000330 1360 ADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINES 1439 (1652)
Q Consensus 1360 kgns~i~~es~s~~vSDfy~~~~~q~d~~falLGD~Lyq~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLSle~~ 1439 (1652)
+. ..+.+ ..++.++.. .|+.++|...|++++...|.+ ..+|++.+..+...|
T Consensus 438 ----~~--------~~~~~-----------~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g- 489 (597)
T 2xpi_A 438 ----QG--------THLPY-----------LFLGMQHMQ--LGNILLANEYLQSSYALFQYD--PLLLNELGVVAFNKS- 489 (597)
T ss_dssp ----TT--------CSHHH-----------HHHHHHHHH--HTCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHTT-
T ss_pred ----CC--------CHHHH-----------HHHHHHHHH--CCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHC-
T ss_conf ----13--------43899-----------999999998--579999999999999848887--679999999999818-
Q ss_pred CCCCCCC
Q ss_conf 9885666
Q 000330 1440 EPKEGAP 1446 (1652)
Q Consensus 1440 dL~KAeq 1446 (1652)
+.++|..
T Consensus 490 ~~~~A~~ 496 (597)
T 2xpi_A 490 DMQTAIN 496 (597)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
T ss_conf 9999999
No 3
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=155.21 Aligned_cols=321 Identities=12% Similarity=0.030 Sum_probs=247.6
Q ss_pred HHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
Q ss_conf 22210001089999999987300355445599999999999982999989999999999728897128999999985099
Q 000330 984 NKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNE 1063 (1652)
Q Consensus 984 ~~le~~~~d~elWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlekAVelnP 1063 (1652)
+-+...|.+.+.|+.+|..++..+ +++.|+.+|..+++.+|.++.+|+.++..|...+...++..+|++|++.+|
T Consensus 17 ~~~~~~p~~~~~~~~~~~~~~~~g-----~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 91 (450)
T 2y4t_A 17 NLYFQSMADVEKHLELGKKLLAAG-----QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM 91 (450)
T ss_dssp ------CHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 356653789999999999999879-----999999999999984971689999999999987997999999999984498
Q ss_pred CCHH----HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH---HHHHH------------HHHHHHH
Q ss_conf 8899----999998358976641235999999999862039999301212037---99999------------9999877
Q 000330 1064 GSYA----LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACIL---DLFLQ------------MLQCFCM 1124 (1652)
Q Consensus 1064 ~NY~----LwlmYInsr~slddrl~~YdkAI~vLe~las~~~~Dr~~~Sa~iL---DILL~------------LvqLY~q 1124 (1652)
.+.. ++.+|...+ .+++|+..|.++.... |+. . +.+.. +..+|..
T Consensus 92 ~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~-~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 155 (450)
T 2y4t_A 92 DFTAARLQRGHLLLKQG--------KLDEAEDDFKKVLKSN-PSE-------NEEKEAQSQLIKSDEMQRLRSQALNAFG 155 (450)
T ss_dssp TCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHTSC-CCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHCC-CCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 74899999999999869--------9999999999997249-997-------0168899999999999999999999998
Q ss_pred HCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 06899999999963052249999642308999986412773205688889998501606798620112332216899865
Q 000330 1125 SGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQ 1204 (1652)
Q Consensus 1125 SGnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDKc~AWL~~iYllrYrvLPGdiy~q~e~~KEAl~I~W~y~~ 1204 (1652)
.|++++|+..+.++.. ..|. + ......+|.+|...+..++|..+ +.+
T Consensus 156 ~~~~~~A~~~~~~~~~-----~~~~--------------~-----------~~~~~~l~~~~~~~g~~~~A~~~---~~~ 202 (450)
T 2y4t_A 156 SGDYTAAIAFLDKILE-----VCVW--------------D-----------AELRELRAECFIKEGEPRKAISD---LKA 202 (450)
T ss_dssp HTCHHHHHHHHHHHHH-----HCTT--------------C-----------HHHHHHHHHHHHHTTCGGGGHHH---HHH
T ss_pred CCCHHHHHHHHHHHHH-----HCCC--------------C-----------HHHHHHHHHHHHHCCCHHHHHHH---HHH
T ss_conf 6899999999999998-----6889--------------7-----------69999999999877999999999---999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHH-H--
Q ss_conf 5312378899999999988863028840234331101368677899999971397999999999999399841489-8--
Q 000330 1205 LEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELV-L-- 1281 (1652)
Q Consensus 1205 vlkdEPdnalAL~smA~dYY~~~~ndEsla~~~~~kt~~~tKLN~Ir~lI~LEDse~A~~LfdklLk~~P~dveL~-L-- 1281 (1652)
+++.+|+++.++..+ ...+...++.+.|+.+|.++++..|.....+ .
T Consensus 203 ~~~~~~~~~~~~~~l------------------------------~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~ 252 (450)
T 2y4t_A 203 ASKLKNDNTEAFYKI------------------------------STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK 252 (450)
T ss_dssp HHHHHCSCHHHHHHH------------------------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHCCCCHHHHHHH------------------------------HHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 998688987999999------------------------------99999759999999999999875998089999999
Q ss_pred -----------HHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf -----------999985102687509999999982999983378999999999997399479999999999965010256
Q 000330 1282 -----------MKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYS 1350 (1652)
Q Consensus 1282 -----------~AAyL~~K~m~~~Aisvle~AL~~~PkNa~g~~caW~QLIq~al~~~n~d~ai~L~~~ff~gia~~Q~~ 1350 (1652)
...++..++ ..+|+..|+.++...|++...+...|..++....+.++++.|+..+.+...-
T Consensus 253 ~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------- 324 (450)
T 2y4t_A 253 QVKKLNKLIESAEELIRDGR-YTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM------- 324 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------
T ss_conf 99999999999999987179-9999999999985087336899999999999999878899999999999884-------
Q ss_pred CCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 11120111026899999999999852222332211357799999999852049899999999997110277089999998
Q 000330 1351 QVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREH 1430 (1652)
Q Consensus 1351 ~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~falLGD~Lyq~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNY 1430 (1652)
.|- ..+.+ ..++.++.. .|++++|..+|++++...|.+ ..++...
T Consensus 325 ------------~p~--------~~~~~-----------~~l~~~~~~--~~~~~~A~~~~~~al~~~p~~--~~~~~~l 369 (450)
T 2y4t_A 325 ------------EPD--------NVNAL-----------KDRAEAYLI--EEMYDEAIQDYETAQEHNEND--QQIREGL 369 (450)
T ss_dssp ------------CTT--------CHHHH-----------HHHHHHHHH--TTCHHHHHHHHHHHHTTSSSC--HHHHHHH
T ss_pred ------------CCC--------CHHHH-----------HHHHHHHHH--HCCHHHHHHHHHHHHHHCCCH--HHHHHHH
T ss_conf ------------845--------48999-----------999999987--037999999999998859352--9999999
Q ss_pred H
Q ss_conf 9
Q 000330 1431 A 1431 (1652)
Q Consensus 1431 A 1431 (1652)
+
T Consensus 370 ~ 370 (450)
T 2y4t_A 370 E 370 (450)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 4
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=153.59 Aligned_cols=358 Identities=11% Similarity=-0.004 Sum_probs=239.9
Q ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH--
Q ss_conf 010899999999873003554455999999999999829999899999999997288971289999999850998899--
Q 000330 990 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA-- 1067 (1652)
Q Consensus 990 ~~d~elWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlekAVelnP~NY~-- 1067 (1652)
....+.|+.+|..++..+.. +.|+..|.++++.+|+++.+|+.++.+|...+...++.+.|++|++.+|++..
T Consensus 22 ~~~a~~~~~~g~~~~~~g~~-----~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 96 (537)
T 3fp2_A 22 QAYAVQLKNRGNHFFTAKNF-----NEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKAL 96 (537)
T ss_dssp HHHHHHHHHHHHHHHHTTCC-----C-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCH-----HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 78899999999999986429-----9999999999863899848999999999986899999999999986098628999
Q ss_pred --HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCC
Q ss_conf --999998358976641235999999999862039999301212037999999999877068999999999630522499
Q 000330 1068 --LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGS 1145 (1652)
Q Consensus 1068 --LwlmYInsr~slddrl~~YdkAI~vLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g 1145 (1652)
++..|...+ .|++|+..|. ..... ++. .+.+ +..+...+...+|+..+..+.......
T Consensus 97 ~~la~~~~~~g--------~~~~A~~~~~-~~~~~-~~~-------~~~~---~~~~~~~~~~~~a~~~~~~~l~~~~~~ 156 (537)
T 3fp2_A 97 LRRASANESLG--------NFTDAMFDLS-VLSLN-GDF-------DGAS---IEPMLERNLNKQAMKVLNENLSKDEGR 156 (537)
T ss_dssp HHHHHHHHHHT--------CHHHHHHHHH-HHC----------------------CHHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHCC--------CHHHHHHHHH-HHHCC-CCC-------CHHH---HHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999838--------9999999999-98648-787-------8588---999998778988999999999747454
Q ss_pred CCCCCCHHHHHHHHHCCCCCCHH---------------HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 99642308999986412773205---------------688889998501606798620112332216899865531237
Q 000330 1146 NDRHSLFLSDILTCLTISDKLIF---------------WVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEK 1210 (1652)
Q Consensus 1146 ~sE~~lSLsKi~~YLt~sDKc~A---------------WL~~iYllrYrvLPGdiy~q~e~~KEAl~I~W~y~~vlkdEP 1210 (1652)
......+...+..|+...+...+ ++.......|....+.+....+.-.+|..+ +.++++.+|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~---~~~~l~~~p 233 (537)
T 3fp2_A 157 GSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDM---YHSLLSANT 233 (537)
T ss_dssp --CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHH---HHHHHC--C
T ss_pred CCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHCC
T ss_conf 54345067579999974474999998763256461789999999878876402068888799999999---999998787
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC-
Q ss_conf 8899999999988863028840234331101368677899999971397999999999999399841489899998510-
Q 000330 1211 QRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKH- 1289 (1652)
Q Consensus 1211 dnalAL~smA~dYY~~~~ndEsla~~~~~kt~~~tKLN~Ir~lI~LEDse~A~~LfdklLk~~P~dveL~L~AAyL~~K- 1289 (1652)
++.-....++.-++ ....++...++.+.++..|.++++..|. ...+...+.+...
T Consensus 234 ~~~~~~~~~~~~~~-----------------------~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 289 (537)
T 3fp2_A 234 VDDPLRENAALALC-----------------------YTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADK 289 (537)
T ss_dssp CCHHHHHHHHHHHH-----------------------HHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCS
T ss_pred CCCHHHHHHHHHHH-----------------------HHHHHHHHCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHH
T ss_conf 74044599999999-----------------------9999987545578999999999866987-46999999999980
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCC
Q ss_conf 26875099999999829999833789999999999973994799999999999650102561112011102689999999
Q 000330 1290 DFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPES 1369 (1652)
Q Consensus 1290 ~m~~~Aisvle~AL~~~PkNa~g~~caW~QLIq~al~~~n~d~ai~L~~~ff~gia~~Q~~~deALDaLrkgns~i~~es 1369 (1652)
+....|+..|+.++...|++.. +|..+.......++++.++..+++.+.-. +.
T Consensus 290 ~~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------------------~~---- 342 (537)
T 3fp2_A 290 ENSQEFFKFFQKAVDLNPEYPP----TYYHRGQMYFILQDYKNAKEDFQKAQSLN-------------------PE---- 342 (537)
T ss_dssp SCCHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------TT----
T ss_pred CCHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHHC-------------------CC----
T ss_conf 3799999999997545999879----99999999986689999999999999859-------------------99----
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99998522223322113577999999998520498999999999971102770899999989888117889885666
Q 000330 1370 TSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAP 1446 (1652)
Q Consensus 1370 ~s~~vSDfy~~~~~q~d~~falLGD~Lyq~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLSle~~dL~KAeq 1446 (1652)
..+.+ ..++.+++. .|++++|...|++++...|.+ ..++.+++..+...+ +.++|..
T Consensus 343 ----~~~~~-----------~~la~~~~~--~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g-~~~~A~~ 399 (537)
T 3fp2_A 343 ----NVYPY-----------IQLACLLYK--QGKFTESEAFFNETKLKFPTL--PEVPTFFAEILTDRG-DFDTAIK 399 (537)
T ss_dssp ----CSHHH-----------HHHHHHHHH--TTCHHHHHHHHHHHHHHCTTC--THHHHHHHHHHHHTT-CHHHHHH
T ss_pred ----CHHHH-----------HHHHHHHHH--CCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHC-CHHHHHH
T ss_conf ----77999-----------999999998--477999999999998739998--599999999998837-8899999
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=150.17 Aligned_cols=90 Identities=9% Similarity=-0.054 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH---HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 99899999999997288971289999999850998899---999998358976641235999999999862039999301
Q 000330 1030 TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMH 1106 (1652)
Q Consensus 1030 tSaelWy~Ll~lY~~~~~~eea~emlekAVelnP~NY~---LwlmYInsr~slddrl~~YdkAI~vLe~las~~~~Dr~~ 1106 (1652)
.++..|..++..|.+.+...++...|+++++..|++.. ++..|...+ .+++|+.+|..+.... ++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~-~~--- 149 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTG--------DYARAKCLLTKEDLYN-RS--- 149 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHTCGGG-TC---
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC--------CHHHHHHHHHHHHCCC-CC---
T ss_conf 89999999999998745834799999999960899357999999999747--------6999999999873354-56---
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 212037999999999877068999999999
Q 000330 1107 ASACILDLFLQMLQCFCMSGNTEKAIQRIS 1136 (1652)
Q Consensus 1107 ~Sa~iLDILL~LvqLY~qSGnydKAI~tl~ 1136 (1652)
.+++..++.+|...|++++|+..+.
T Consensus 150 -----~~~~~~l~~~~~~~g~~~~A~~~~~ 174 (597)
T 2xpi_A 150 -----SACRYLAAFCLVKLYDWQGALNLLG 174 (597)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -----5089999999998866999999984
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=148.04 Aligned_cols=148 Identities=13% Similarity=0.031 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHH------HHHHHHHHHHHH
Q ss_conf 06798620112332216899865531237889999999998886302884023433110136------867789999997
Q 000330 1182 PDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAH------CFAVNHIWCMAV 1255 (1652)
Q Consensus 1182 PGdiy~q~e~~KEAl~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ndEsla~~~~~kt~~------~tKLN~Ir~lI~ 1255 (1652)
+|.++...+...+|... +.+.++.+|+++.++..+|.-|+. .|+-..+.....++.. ..-.++...+..
T Consensus 209 lg~~~~~~~~~~~A~~~---~~~al~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 283 (388)
T 1w3b_A 209 LGNVLKEARIFDRAVAA---YLRALSLSPNHAVVHGNLACVYYE--QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHTTTCTTHHHHH---HHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHH---HHHHHHHCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 99999985789999999---999985296878999999999998--6889999999999986499988999999999998
Q ss_pred HCCHHHHHHHHHHHHHHCCCCHHHH--HHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 1397999999999999399841489--89999851026875099999999829999833789999999999973994799
Q 000330 1256 LNGLECSMNLLEKYIKLYPSCLELV--LMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFA 1333 (1652)
Q Consensus 1256 LEDse~A~~LfdklLk~~P~dveL~--L~AAyL~~K~m~~~Aisvle~AL~~~PkNa~g~~caW~QLIq~al~~~n~d~a 1333 (1652)
.++.+.++.+|.++++..|.+++.+ +...+...+ ..++|+..|++++...|++.. +|+.++......++++++
T Consensus 284 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~g~~~~A 358 (388)
T 1w3b_A 284 KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG-NIEEAVRLYRKALEVFPEFAA----AHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp HSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT-CHHHHHHHHHHHTTSCTTCHH----HHHHHHHHHHTTTCCHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHCCCCCHH----HHHHHHHHHHHCCCHHHH
T ss_conf 699799999999998649444999999999999848-999999999999860987399----997799999986888999
Q ss_pred HHHHHH
Q ss_conf 999999
Q 000330 1334 AELMDR 1339 (1652)
Q Consensus 1334 i~L~~~ 1339 (1652)
+.+.++
T Consensus 359 ~~~~~~ 364 (388)
T 1w3b_A 359 LMHYKE 364 (388)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=146.83 Aligned_cols=365 Identities=10% Similarity=-0.036 Sum_probs=209.3
Q ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH----
Q ss_conf 0899999999873003554455999999999999829999899999999997288971289999999850998899----
Q 000330 992 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---- 1067 (1652)
Q Consensus 992 d~elWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlekAVelnP~NY~---- 1067 (1652)
..+.|+..|..++..+ +|+.|+..|.++++.+| ++.+|+.++..|...+...++...|++|++.+|.+..
T Consensus 5 ~a~~~~~~g~~~~~~g-----~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 78 (514)
T 2gw1_A 5 YALALKDKGNQFFRNK-----KYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLR 78 (514)
T ss_dssp HHHHHHHHHHHHHHTS-----CHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 5799999878999860-----27899999999985592-27899868899998854999999998776069378999998
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999835897664123599999999986203999930121203799999999987706899999999963052249999
Q 000330 1068 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSND 1147 (1652)
Q Consensus 1068 LwlmYInsr~slddrl~~YdkAI~vLe~las~~~~Dr~~~Sa~iLDILL~LvqLY~qSGnydKAI~tl~rLEq~Al~g~s 1147 (1652)
++..|...+ .|++|+..|.++....+.+ ...+..++..+.......++...+..+... . ..
T Consensus 79 l~~~~~~~g--------~~~~A~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~-~~ 139 (514)
T 2gw1_A 79 RASANEGLG--------KFADAMFDLSVLSLNGDFN--------DASIEPMLERNLNKQAMSKLKEKFGDIDTA--T-AT 139 (514)
T ss_dssp HHHHHHHTT--------CHHHHHHHHHHHHHSSSCC--------GGGTHHHHHHHHHHHHHHHHTTC-------------
T ss_pred HHHHHHHHH--------HHHHHHHHHHHHHHCCCCC--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HH
T ss_conf 889999876--------6888999999999559875--------113789999999999999999999989999--8-76
Q ss_pred CCCCHHH-HHHHHHCCCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 6423089-99986412773205688889998501606----------798620112332216899865531237889999
Q 000330 1148 RHSLFLS-DILTCLTISDKLIFWVCCVYLVIYRKLPD----------AVLQLLECEKELFAIDWPPVQLEDDEKQRAIKL 1216 (1652)
Q Consensus 1148 E~~lSLs-Ki~~YLt~sDKc~AWL~~iYllrYrvLPG----------diy~q~e~~KEAl~I~W~y~~vlkdEPdnalAL 1216 (1652)
+..+... ..........-........+...|..-+. ..+...+.. . +......+.+.+...
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~A~~~ 211 (514)
T 2gw1_A 140 PTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLS--N------LYKRSPESYDKADES 211 (514)
T ss_dssp -----------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHH--H------HSSCCTTHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHH--H------HHHHHHCCHHHHHHH
T ss_conf 65126772467886344786158999998625878888872599588899998999--9------876233229999999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHCCCCCC
Q ss_conf 999998886302884023433110136867789999997139799999999999939984148--989999851026875
Q 000330 1217 IEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDL 1294 (1652)
Q Consensus 1217 ~smA~dYY~~~~ndEsla~~~~~kt~~~tKLN~Ir~lI~LEDse~A~~LfdklLk~~P~dveL--~L~AAyL~~K~m~~~ 1294 (1652)
+..+...+.....+..-... ........-..+...+...++.+.++.+|.++++..|. ... .+...|+..++ ..+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~-~~~ 288 (514)
T 2gw1_A 212 FTKAARLFEEQLDKNNEDEK-LKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRND-STE 288 (514)
T ss_dssp HHHHHHHHHHHTTTSTTCHH-HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSC-CTT
T ss_pred HHHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCC-HHH
T ss_conf 99999886654223810011-48278999999999999878999999999999863864-8999999999998888-999
Q ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCC
Q ss_conf 09999999982999983378999999999997399479999999999965010256111201110268999999999998
Q 000330 1295 SSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSD 1374 (1652)
Q Consensus 1295 Aisvle~AL~~~PkNa~g~~caW~QLIq~al~~~n~d~ai~L~~~ff~gia~~Q~~~deALDaLrkgns~i~~es~s~~v 1374 (1652)
|+..|+.++...|++.. +|..+.......++++.++....+.+... +. .
T Consensus 289 A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------------------~~--------~ 337 (514)
T 2gw1_A 289 YYNYFDKALKLDSNNSS----VYYHRGQMNFILQNYDQAGKDFDKAKELD-------------------PE--------N 337 (514)
T ss_dssp GGGHHHHHHTTCTTCTH----HHHHHHHHHHHTTCTTHHHHHHHHHHHTC-------------------SS--------C
T ss_pred HHHHHHHHHHCCCCCHH----HHHHHHHHHHHHCCHHHHHHHHHHHHHHC-------------------HH--------H
T ss_conf 99999998613867789----99999999998077999999999998738-------------------50--------2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 5222233221135779999999985204989999999999711027708999999898881178
Q 000330 1375 PEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINE 1438 (1652)
Q Consensus 1375 SDfy~~~~~q~d~~falLGD~Lyq~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYAYFLSle~ 1438 (1652)
.+.+ ..++.+++. .|++++|...|++++...|.+ ..++.+.+..+...+
T Consensus 338 ~~~~-----------~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~ 386 (514)
T 2gw1_A 338 IFPY-----------IQLACLAYR--ENKFDDCETLFSEAKRKFPEA--PEVPNFFAEILTDKN 386 (514)
T ss_dssp SHHH-----------HHHHHHTTT--TTCHHHHHHHHHHHHHHSTTC--SHHHHHHHHHHHHTT
T ss_pred HHHH-----------HHHHHHHHH--CCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCC
T ss_conf 8999-----------999999998--689999999999999875467--789999999998788
No 8
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=1.00 E-value=1 Score=146.43 Aligned_cols=378 Identities=10% Similarity=0.010 Sum_probs=214.8
Q ss_pred HHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
Q ss_conf 22100010899999999873003554455999999999999829999899999999997288971289999999850998
Q 000330 985 KLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG 1064 (1652)
Q Consensus 985 ~le~~~~d~elWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlekAVelnP~ 1064 (1652)
-|+..|.+.++|+.++. +... ++++.|..+|.++|+.+|.++.+|+.|+.++...++.+.+...|++||+..|
T Consensus 5 al~~~P~~~~~w~~l~~-~~~~-----~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p- 77 (530)
T 2ooe_A 5 KLEENPYDLDAWSILIR-EAQN-----QPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL- 77 (530)
T ss_dssp HHHHCTTCHHHHHHHHH-HHHS-----SCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-
T ss_pred HHHHCCCCHHHHHHHHH-HHHH-----CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-
T ss_conf 86539777999999999-9984-----8799999999999987899799999999999866988999999999872289-
Q ss_pred CHHHHHHHHHCCCCCCCCH-HHHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHH---------HCCHHHHH
Q ss_conf 8999999983589766412-35999999999862039--999301212037999999999877---------06899999
Q 000330 1065 SYALWLMYINSRTPLNHRL-DAYDAALSVLCRCASAS--DGDEMHASACILDLFLQMLQCFCM---------SGNTEKAI 1132 (1652)
Q Consensus 1065 NY~LwlmYInsr~slddrl-~~YdkAI~vLe~las~~--~~Dr~~~Sa~iLDILL~LvqLY~q---------SGnydKAI 1132 (1652)
+..+|.+|++......++. .+-+.++.+|+++.... +++. .++|...+.++.. .|++++|+
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~-------~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~ 150 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMS-------YQIWVDYINFLKGVEAVGSYAENQRITAVR 150 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTC-------HHHHHHHHHHHHHSCCCSSTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCC-------HHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 8489999999999974650468999999999999977888660-------799999999996077765378773799999
Q ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 999963052249999642308999986412773205688889-9985016067986201123322168998655312378
Q 000330 1133 QRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY-LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQ 1211 (1652)
Q Consensus 1133 ~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDKc~AWL~~iY-llrYrvLPGdiy~q~e~~KEAl~I~W~y~~vlkdEPd 1211 (1652)
..+.+... .| ...+ ...|..+.. ...+....+.-++.. ...+..
T Consensus 151 ~~y~~al~------~P-~~~~------------~~~~~~~~~~e~~~~~~~~~~~l~~----------------~~~~~~ 195 (530)
T 2ooe_A 151 RVYQRGCV------NP-MINI------------EQLWRDYNKYEEGINIHLAKKMIED----------------RSRDYM 195 (530)
T ss_dssp HHHHHHTT------SC-CTTH------------HHHHHHHHHHHHHHCHHHHHHHHHT----------------THHHHH
T ss_pred HHHHHHHH------CH-HHHH------------HHHHHHHHHHHHHHCHHHHHHHHHH----------------HHHHHH
T ss_conf 99999996------66-6359------------9999999999972166679999998----------------528888
Q ss_pred HHHHHHHHHHHHHHHHCCCC--CHHHHHHHCHHHHHHHHHHHHHHHH--------CCH----HHHHHHHHHHHHHCCCCH
Q ss_conf 89999999998886302884--0234331101368677899999971--------397----999999999999399841
Q 000330 1212 RAIKLIEMAVNSVELYSNGE--SLEKETNLRSAHCFAVNHIWCMAVL--------NGL----ECSMNLLEKYIKLYPSCL 1277 (1652)
Q Consensus 1212 nalAL~smA~dYY~~~~ndE--sla~~~~~kt~~~tKLN~Ir~lI~L--------EDs----e~A~~LfdklLk~~P~dv 1277 (1652)
.+...+.. ..-+......- .+... ........+...+.++.. ++. ..++.+|++.++.+|.++
T Consensus 196 ~A~~~~~~-~~~~~~~l~~~~~~~~p~--~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~ 272 (530)
T 2ooe_A 196 NARRVAKE-YETVMKGLDRNAPSVPPQ--NTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHP 272 (530)
T ss_dssp HHHHHHHH-HHHHHHHCCSSSCCCCCC----CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHH-HHHHHHHHCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 79999999-999999742034558999--986579999999999999870975577512688999999999998578977
Q ss_pred HHHHHHHHHHH--------CCCCC-------CCHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 48989999851--------02687-------50999999998-2999983378999999999997399479999999999
Q 000330 1278 ELVLMKARLQK--------HDFGD-------LSSVGFEEALI-KWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWF 1341 (1652)
Q Consensus 1278 eL~L~AAyL~~--------K~m~~-------~Aisvle~AL~-~~PkNa~g~~caW~QLIq~al~~~n~d~ai~L~~~ff 1341 (1652)
++|+..+.+.. .+..+ +++.+|+.|+. .+|++.. +|..|+......++++.|+.+.++.+
T Consensus 273 ~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~----l~~~~~~~~~~~g~~~~A~~~~~~al 348 (530)
T 2ooe_A 273 DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML----LYFAYADYEESRMKYEKVHSIYNRLL 348 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH----HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999999999835465532651221211499999999999986866579----99999999986388999999999985
Q ss_pred HHHHH------C--------CCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 96501------0--------256111201110268999999999998522223322113577999999998520498999
Q 000330 1342 HSVWK------V--------QYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEA 1407 (1652)
Q Consensus 1342 ~gia~------~--------Q~~~deALDaLrkgns~i~~es~s~~vSDfy~~~~~q~d~~falLGD~Lyq~Lqg~~~EA 1407 (1652)
..-+. . +.+.++|..+|+++....+. ...+| .+.....++. .|+.++|
T Consensus 349 ~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~------~~~~~----------~~~a~~~~~~--~~~~~~A 410 (530)
T 2ooe_A 349 AIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART------RHHVY----------VTAALMEYYC--SKDKSVA 410 (530)
T ss_dssp HSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC------CTHHH----------HHHHHHHHHH--TCCHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC------CHHHH----------HHHHHHHHHH--CCCHHHH
T ss_conf 7645683099999999999806889999999999735577------50899----------9999999988--0783599
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 9999999711027708999999898881178
Q 000330 1408 RLAIDAALKAAASEHFKHCVREHAMLLLINE 1438 (1652)
Q Consensus 1408 faAYDKALkanp~N~~i~cLNNYAYFLSle~ 1438 (1652)
...|++||+..|++ ...|.+|+.|+...|
T Consensus 411 ~~~~e~al~~~p~~--~~~~~~~~~~~~~~g 439 (530)
T 2ooe_A 411 FKIFELGLKKYGDI--PEYVLAYIDYLSHLN 439 (530)
T ss_dssp HHHHHHHHHHHTTC--HHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHCCCC--HHHHHHHHHHHHHCC
T ss_conf 99999999878997--899999999998679
No 9
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=1.00 E-value=1 Score=145.30 Aligned_cols=313 Identities=11% Similarity=0.029 Sum_probs=238.6
Q ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH----
Q ss_conf 0899999999873003554455999999999999829999899999999997288971289999999850998899----
Q 000330 992 SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA---- 1067 (1652)
Q Consensus 992 d~elWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlekAVelnP~NY~---- 1067 (1652)
|.+.|+.+|..++..+ +++.|+..|..+++.+|.++.+|+.++.+|...+...++...|++|++..|.+..
T Consensus 2 ~~~~~~~~~~~~~~~g-----~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 76 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAG-----QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQ 76 (359)
T ss_dssp HHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 5788998799998758-----99999999999986196569999999999997347799999999999868996469999
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCC---CCCHHHHHHHHHHHH------------HHHHHHHHCCHHHHH
Q ss_conf 99999835897664123599999999986203999---930121203799999------------999987706899999
Q 000330 1068 LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDG---DEMHASACILDLFLQ------------MLQCFCMSGNTEKAI 1132 (1652)
Q Consensus 1068 LwlmYInsr~slddrl~~YdkAI~vLe~las~~~~---Dr~~~Sa~iLDILL~------------LvqLY~qSGnydKAI 1132 (1652)
++.+|...+ .|++|+..|.++.... | +. .+++.. +..++...|++++|+
T Consensus 77 l~~~~~~~~--------~~~~A~~~~~~~~~~~-~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 140 (359)
T 3ieg_A 77 RGHLLLKQG--------KLDEAEDDFKKVLKSN-PSEQEE-------KEAESQLVKADEMQRLRSQALDAFDGADYTAAI 140 (359)
T ss_dssp HHHHHHHHT--------CHHHHHHHHHHHHTSC-CCHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHCC--------CHHHHHHHHHHHHHCC-CCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 999999837--------8599999999998639-766671-------889999999999999999999998724779999
Q ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 99996305224999964230899998641277320568888999850160679862011233221689986553123788
Q 000330 1133 QRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQR 1212 (1652)
Q Consensus 1133 ~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDKc~AWL~~iYllrYrvLPGdiy~q~e~~KEAl~I~W~y~~vlkdEPdn 1212 (1652)
..+.++.. . .|. + . ......|.+|...+..++|... +.++++.+|++
T Consensus 141 ~~~~~~~~--~---~~~--------------~---~--------~~~~~~~~~~~~~~~~~~A~~~---~~~~~~~~~~~ 187 (359)
T 3ieg_A 141 TFLDKILE--V---CVW--------------D---A--------ELRELRAECFIKEGEPRKAISD---LKAASKLKSDN 187 (359)
T ss_dssp HHHHHHHH--H---CTT--------------C---H--------HHHHHHHHHHHHTTCHHHHHHH---HHHHHTTCSCC
T ss_pred HHHHHHHH--H---CCC--------------C---H--------HHHHHHHHHHHHCCCHHHHHHH---HHHHHHHCCCC
T ss_conf 99999997--6---899--------------6---6--------8999999999877899999999---99998739777
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHH-----------
Q ss_conf 999999999888630288402343311013686778999999713979999999999993998414898-----------
Q 000330 1213 AIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVL----------- 1281 (1652)
Q Consensus 1213 alAL~smA~dYY~~~~ndEsla~~~~~kt~~~tKLN~Ir~lI~LEDse~A~~LfdklLk~~P~dveL~L----------- 1281 (1652)
+.+++.+ ..++...++.+.++..|.++++..|.+...+.
T Consensus 188 ~~~~~~l------------------------------a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 188 TEAFYKI------------------------------STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHH------------------------------HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH------------------------------HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 7999999------------------------------9999984989999999999985185645899999999999999
Q ss_pred ---HHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf ---99998510268750999999998299998337899999999999739947999999999996501025611120111
Q 000330 1282 ---MKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPL 1358 (1652)
Q Consensus 1282 ---~AAyL~~K~m~~~Aisvle~AL~~~PkNa~g~~caW~QLIq~al~~~n~d~ai~L~~~ff~gia~~Q~~~deALDaL 1358 (1652)
...++..++ ..+|+..|+.++...|++...+..+|..+.......++++.++..+.+.+..
T Consensus 238 ~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------------- 301 (359)
T 3ieg_A 238 IESAEELIRDGR-YTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--------------- 301 (359)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHCCC-HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------
T ss_conf 999999998689-9999999999985398862799999999999998836889999999999985---------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 0268999999999998522223322113577999999998520498999999999971102770899999989
Q 000330 1359 VADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHA 1431 (1652)
Q Consensus 1359 rkgns~i~~es~s~~vSDfy~~~~~q~d~~falLGD~Lyq~Lqg~~~EAfaAYDKALkanp~N~~i~cLNNYA 1431 (1652)
.|. ..+++ ..+|.+++. .|+.++|...|++|+..+|++ ...+...+
T Consensus 302 ----~~~--------~~~~~-----------~~~~~~~~~--~g~~~~A~~~~~~a~~~~p~~--~~~~~~l~ 347 (359)
T 3ieg_A 302 ----EPD--------NVNAL-----------KDRAEAYLI--EEMYDEAIQDYEAAQEHNEND--QQIREGLE 347 (359)
T ss_dssp ----CTT--------CHHHH-----------HHHHHHHHH--TTCHHHHHHHHHHHHTTCTTC--HHHHHHHH
T ss_pred ----CCC--------CHHHH-----------HHHHHHHHH--CCCHHHHHHHHHHHHHCCCCC--HHHHHHHH
T ss_conf ----922--------37999-----------999999988--078999999999998609998--67999999
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=143.66 Aligned_cols=308 Identities=12% Similarity=0.006 Sum_probs=163.9
Q ss_pred HHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 21000108999999998730035544559999999999998299998999999999972889712899999998509988
Q 000330 986 LKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 1065 (1652)
Q Consensus 986 le~~~~d~elWLelAl~~Lnq~~n~~g~ydAALdLLsrALEINPtSaelWy~Ll~lY~~~~~~eea~emlekAVelnP~N 1065 (1652)
++..|.+...|..+|..++..+ +++.|+..|.++++++|+++.+|+.++.+|...+...++...|+ ++..+|+.
T Consensus 52 l~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~ 125 (537)
T 3fp2_A 52 IELDPNEPVFYSNISACYISTG-----DLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDF 125 (537)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----
T ss_pred HHHCCCCCHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH-HHHCCCCC
T ss_conf 8638998489999999999868-----99999999999986098628999999999998389999999999-98648787
Q ss_pred HHHH-HHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCH--H---------------------------HHHHHHHH
Q ss_conf 9999-9998358976641235999999999862039999301--2---------------------------12037999
Q 000330 1066 YALW-LMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMH--A---------------------------SACILDLF 1115 (1652)
Q Consensus 1066 Y~Lw-lmYInsr~slddrl~~YdkAI~vLe~las~~~~Dr~~--~---------------------------Sa~iLDIL 1115 (1652)
...+ ..++... ....|+..|.++....+..... . ......+.
T Consensus 126 ~~~~~~~~~~~~--------~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (537)
T 3fp2_A 126 DGASIEPMLERN--------LNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLS 197 (537)
T ss_dssp ------CHHHHH--------HHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHH
T ss_pred CHHHHHHHHHHH--------HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 858899999877--------898899999999974745454345067579999974474999998763256461789999
Q ss_pred HHHHHHHHHH--------CCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999998770--------68999999999630522499996423089999864127732056888899985016067986
Q 000330 1116 LQMLQCFCMS--------GNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQ 1187 (1652)
Q Consensus 1116 L~LvqLY~qS--------GnydKAI~tl~rLEq~Al~g~sE~~lSLsKi~~YLt~sDKc~AWL~~iYllrYrvLPGdiy~ 1187 (1652)
..+..++..+ |++++|+..+.++.. ..|. +. .+|.. ........|.++.
T Consensus 198 ~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~-----~~p~--------------~~-~~~~~---~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 198 DALQRLYSATDEGYLVANDLLTKSTDMYHSLLS-----ANTV--------------DD-PLREN---AALALCYTGIFHF 254 (537)
T ss_dssp HHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-------CC--------------CH-HHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCCC--------------CC-HHHHH---HHHHHHHHHHHHH
T ss_conf 999878876402068888799999999999998-----7877--------------40-44599---9999999999987
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHH------HHHHHHHHHHHHCCHHH
Q ss_conf 201123322168998655312378899999999988863028840234331101368------67789999997139799
Q 000330 1188 LLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHC------FAVNHIWCMAVLNGLEC 1261 (1652)
Q Consensus 1188 q~e~~KEAl~I~W~y~~vlkdEPdnalAL~smA~dYY~~~~ndEsla~~~~~kt~~~------tKLN~Ir~lI~LEDse~ 1261 (1652)
..+..++|... +.++++.+|+ ..+++.+|.-|+. .++-..+.....++... .-.++..++...++.+.
T Consensus 255 ~~~~~~~A~~~---~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 255 LKNNLLDAQVL---LQESINLHPT-PNSYIFLALTLAD--KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp HTTCHHHHHHH---HHHHHHHCCC-HHHHHHHHHHTCC--SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HCCCHHHHHHH---HHHHHHCCCC-CHHHHHHHHHHHH--HCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHH
T ss_conf 54557899999---9999866987-4699999999998--0379999999999754599987999999999986689999
Q ss_pred HHHHHHHHHHHCCCCHHH--HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 999999999939984148--989999851026875099999999829999833789999999999973994799999999
Q 000330 1262 SMNLLEKYIKLYPSCLEL--VLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 1339 (1652)
Q Consensus 1262 A~~LfdklLk~~P~dveL--~L~AAyL~~K~m~~~Aisvle~AL~~~PkNa~g~~caW~QLIq~al~~~n~d~ai~L~~~ 1339 (1652)
++..|.++++..|.+... .+...|+..++ .++|+..|+.++...|++.. +|..+.......++++.++....+
T Consensus 329 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 329 AKEDFQKAQSLNPENVYPYIQLACLLYKQGK-FTESEAFFNETKLKFPTLPE----VPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp HHHHHHHHHHHCTTCSHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCTH----HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 9999999998599977999999999998477-99999999999873999859----999999999883788999999999
Q ss_pred HH
Q ss_conf 99
Q 000330 1340 WF 1341 (1652)
Q Consensus 1340 ff 1341 (1652)
.+
T Consensus 404 a~ 405 (537)
T 3fp2_A 404 AK 405 (537)
T ss_dssp HH
T ss_pred HH
T ss_conf 98
Done!