Query 000331
Match_columns 1652
No_of_seqs 311 out of 728
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 04:40:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000331.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000331hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1848 Uncharacterized conser 100.0 9E-149 2E-153 1382.6 63.5 1496 1-1639 9-1608(1610)
2 PLN03076 ARF guanine nucleotid 100.0 2E-139 5E-144 1403.7 106.9 1062 4-1160 11-1514(1780)
3 KOG0929 Guanine nucleotide exc 100.0 3E-101 7E-106 990.7 56.5 998 15-1159 12-1322(1514)
4 KOG0928 Pattern-formation prot 100.0 2.2E-75 4.7E-80 734.4 73.9 1014 24-1153 40-1353(1386)
5 PF12783 Sec7_N: Guanine nucle 100.0 9.1E-29 2E-33 268.4 17.1 156 224-387 3-168 (168)
6 COG5307 SEC7 domain proteins [ 99.8 2.9E-19 6.2E-24 232.5 23.9 732 254-1133 27-1011(1024)
7 PF09324 DUF1981: Domain of un 99.5 6.2E-14 1.3E-18 133.8 6.4 78 794-871 9-86 (86)
8 KOG1846 Uncharacterized conser 99.1 6.7E-08 1.4E-12 118.6 30.3 563 526-1153 640-1350(1777)
9 PLN03076 ARF guanine nucleotid 98.8 0.00042 9E-09 97.6 53.2 265 1325-1640 1437-1775(1780)
10 KOG1848 Uncharacterized conser 98.6 1.5E-06 3.3E-11 113.1 18.8 470 1096-1617 9-565 (1610)
11 KOG0930 Guanine nucleotide exc 96.2 0.0025 5.4E-08 71.0 2.3 33 440-472 153-203 (395)
12 KOG0931 Predicted guanine nucl 92.0 0.1 2.2E-06 62.3 3.0 30 439-468 289-339 (627)
13 PF01602 Adaptin_N: Adaptin N 91.7 51 0.0011 42.7 31.5 146 714-895 54-201 (526)
14 PTZ00429 beta-adaptin; Provisi 85.0 1.6E+02 0.0035 39.9 30.2 139 20-170 151-300 (746)
15 PF12348 CLASP_N: CLASP N term 80.4 85 0.0019 35.7 18.2 176 716-920 26-210 (228)
16 KOG0929 Guanine nucleotide exc 80.2 29 0.00063 49.1 16.0 41 814-854 1185-1226(1514)
17 PTZ00429 beta-adaptin; Provisi 76.3 3E+02 0.0065 37.5 26.7 62 13-80 109-170 (746)
18 cd00171 Sec7 Sec7 domain; Doma 74.6 2.5 5.4E-05 47.0 3.2 32 439-470 93-143 (185)
19 PF02985 HEAT: HEAT repeat; I 73.3 6 0.00013 30.2 4.1 28 977-1004 2-29 (31)
20 PF11864 DUF3384: Domain of un 71.0 98 0.0021 39.7 16.7 234 674-1002 208-464 (464)
21 PF01369 Sec7: Sec7 domain; I 69.4 3.4 7.4E-05 46.2 2.8 33 438-470 96-148 (190)
22 smart00222 Sec7 Sec7 domain. D 69.0 4.1 8.8E-05 45.4 3.3 32 439-470 94-145 (187)
23 KOG2023 Nuclear transport rece 67.4 1.1E+02 0.0024 39.7 15.1 157 682-873 127-285 (885)
24 PF14500 MMS19_N: Dos2-interac 66.8 78 0.0017 37.3 13.3 75 817-894 96-171 (262)
25 PF12348 CLASP_N: CLASP N term 66.3 98 0.0021 35.2 14.1 104 254-368 23-126 (228)
26 KOG1949 Uncharacterized conser 60.5 68 0.0015 41.7 11.6 110 986-1136 185-295 (1005)
27 KOG1062 Vesicle coat complex A 56.9 6.4E+02 0.014 34.0 22.5 134 21-167 154-303 (866)
28 KOG2160 Armadillo/beta-catenin 56.8 1.4E+02 0.003 36.3 13.0 116 733-876 123-243 (342)
29 KOG2023 Nuclear transport rece 56.7 69 0.0015 41.5 10.8 162 733-915 123-284 (885)
30 PF12717 Cnd1: non-SMC mitotic 51.0 1.8E+02 0.0039 32.0 12.2 91 731-851 18-109 (178)
31 PF02985 HEAT: HEAT repeat; I 48.2 37 0.00079 25.9 4.3 29 739-767 1-29 (31)
32 KOG1824 TATA-binding protein-i 45.9 7.8E+02 0.017 34.0 17.8 220 660-897 435-662 (1233)
33 PF08427 DUF1741: Domain of un 45.6 4.8E+02 0.01 30.4 14.6 68 967-1034 57-135 (237)
34 cd00020 ARM Armadillo/beta-cat 44.6 59 0.0013 32.2 6.7 73 739-834 8-80 (120)
35 KOG1062 Vesicle coat complex A 44.3 9.7E+02 0.021 32.4 30.3 45 863-911 293-337 (866)
36 PF11640 TAN: Telomere-length 43.3 2.2E+02 0.0049 30.6 11.2 49 982-1031 11-61 (155)
37 KOG1248 Uncharacterized conser 42.5 7.7E+02 0.017 34.8 17.7 201 748-1023 664-875 (1176)
38 KOG0166 Karyopherin (importin) 41.8 2.5E+02 0.0055 36.1 12.6 212 742-1033 156-375 (514)
39 KOG1993 Nuclear transport rece 41.7 9.7E+02 0.021 32.5 17.6 119 976-1137 527-648 (978)
40 PF12719 Cnd3: Nuclear condens 41.7 4.3E+02 0.0094 31.6 14.5 126 17-170 72-206 (298)
41 PF09324 DUF1981: Domain of un 40.4 66 0.0014 31.1 5.8 53 1072-1130 33-85 (86)
42 PF01602 Adaptin_N: Adaptin N 40.4 9.2E+02 0.02 31.0 31.2 134 737-910 230-363 (526)
43 PF12830 Nipped-B_C: Sister ch 37.4 1.2E+02 0.0026 33.8 8.2 89 49-142 7-96 (187)
44 KOG1824 TATA-binding protein-i 36.0 1.4E+03 0.03 31.8 24.6 262 813-1136 15-289 (1233)
45 PF12717 Cnd1: non-SMC mitotic 34.9 3.7E+02 0.0081 29.5 11.5 136 751-921 1-137 (178)
46 PF05004 IFRD: Interferon-rela 34.7 9E+02 0.02 29.3 19.8 156 1071-1238 57-214 (309)
47 PF12719 Cnd3: Nuclear condens 34.4 7.7E+02 0.017 29.5 15.0 104 738-869 27-139 (298)
48 PF12755 Vac14_Fab1_bd: Vacuol 34.3 2.2E+02 0.0047 28.3 8.5 28 975-1003 68-95 (97)
49 PF12783 Sec7_N: Guanine nucle 34.1 5.4E+02 0.012 27.9 12.6 87 681-769 8-104 (168)
50 PF10521 DUF2454: Protein of u 32.2 8.5E+02 0.018 29.0 14.7 159 969-1157 113-274 (282)
51 KOG1241 Karyopherin (importin) 31.5 1.5E+03 0.032 30.7 19.9 262 747-1132 10-287 (859)
52 PF12755 Vac14_Fab1_bd: Vacuol 31.1 1.2E+02 0.0026 30.1 6.0 71 802-874 27-97 (97)
53 PF08167 RIX1: rRNA processing 29.0 7.1E+02 0.015 27.1 12.3 100 262-373 4-109 (165)
54 PLN03200 cellulose synthase-in 28.8 2.5E+03 0.053 32.6 23.3 266 739-1136 1529-1808(2102)
55 KOG2956 CLIP-associating prote 26.8 9.1E+02 0.02 30.7 13.5 112 975-1131 287-399 (516)
56 KOG2274 Predicted importin 9 [ 26.5 1.7E+02 0.0037 39.5 7.8 91 267-364 552-645 (1005)
57 cd00020 ARM Armadillo/beta-cat 26.2 1.6E+02 0.0034 29.1 6.2 69 13-81 11-80 (120)
58 KOG1766 Enhancer of rudimentar 24.8 1.1E+02 0.0024 29.7 4.2 49 1065-1113 14-65 (104)
59 PF03378 CAS_CSE1: CAS/CSE pro 22.1 1.7E+03 0.037 28.3 27.8 276 734-1117 67-352 (435)
60 PF08767 CRM1_C: CRM1 C termin 21.9 1.2E+03 0.025 28.4 13.6 116 803-920 72-198 (319)
61 PF08767 CRM1_C: CRM1 C termin 21.2 4.8E+02 0.01 31.7 10.0 115 987-1137 83-198 (319)
62 PF04826 Arm_2: Armadillo-like 20.8 8.1E+02 0.017 28.8 11.4 128 9-142 12-144 (254)
63 PF13646 HEAT_2: HEAT repeats; 20.3 5.7E+02 0.012 23.8 8.6 54 14-77 4-58 (88)
64 PF10274 ParcG: Parkin co-regu 20.3 1.1E+02 0.0024 34.0 3.9 33 49-81 79-111 (183)
No 1
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=9.3e-149 Score=1382.55 Aligned_cols=1496 Identities=31% Similarity=0.365 Sum_probs=1136.0
Q ss_pred CchHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHhCCCCCCc----ccC-chhHHHHHHHHhcCCCchhHHHHHHHHH
Q 000331 1 MALMAVLESDLRALSAEARRRYPAVKDGAEHAILKLRSLSSPSE----LAQ-SEDILRIFLMACEVRTVKLSVIGLSCIQ 75 (1652)
Q Consensus 1 m~~~~~L~~dL~~L~~EskRk~~~lk~A~e~sl~~Lk~~~~~~~----l~~-~~~~l~PfllaC~skn~kl~~iaL~~lq 75 (1652)
|+++++|.+||++|++||||||++||+|||+++.+||+..++++ +.. +++|+.||++||++||.|++.|||+|||
T Consensus 9 ~sl~~aL~adLrsLsseArkKnn~VK~aAdkSi~~Lr~isS~s~ds~vlet~~edf~~PfllaC~sr~tRl~~ials~iQ 88 (1610)
T KOG1848|consen 9 MSLVRALLADLRSLSSEARKKNNEVKLAADKSIQELRQISSASRDSDVLETPNEDFLVPFLLACISRNTRLFVIALSCIQ 88 (1610)
T ss_pred HHHHHHHHHHHHHhhHHHHhhchHHHHHHHhHHHHHHhhccccccccccccCCcccccceeeecccCcccceeeHHHHHH
Confidence 78999999999999999999999999999999999999999876 444 8999999999999999999999999999
Q ss_pred HHHhcCCCCcchHHHHH-HHHHcccCCCCchHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHhhhccccCChHHHHHHH
Q 000331 76 KLISHDAVAPSALKEIF-SMLKNHADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQALGICLRLLENNRSSDSVRNTA 154 (1652)
Q Consensus 76 kLi~~~~i~~~~l~~Il-~~l~~~~~~~~e~VqLkILQ~L~~l~~s~~~~~~g~~L~~~l~~C~~L~~~sk~~~~v~~TA 154 (1652)
||+.|++++++...+++ +.||.+... +.+|||+||++|.++++|...+.|+.|.+++.+||+|+. +|++ +|.|||
T Consensus 89 kL~~~dsleps~~aeildn~L~a~~qa--e~~QLrvLQtiPii~~syl~fi~~p~l~kll~iCfnLl~-~knk-vV~NaA 164 (1610)
T KOG1848|consen 89 KLGRHDSLEPSVTAEILDNNLWAAAQA--EWIQLRVLQTIPIIFFSYLTFITGPPLLKLLIICFNLLY-QKNK-VVFNAA 164 (1610)
T ss_pred HHhccCCCCCcccHHHHHHHHHHHHHH--HHHHHhhhccccceeeeceeeccCcHHHHHHHHHHHHHc-CCCc-ceechh
Confidence 99999999996554444 445544332 578999999999999999999999999999999999976 4778 999999
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCCCCCCCCCcccccccccccccccCCCCcccccccCCCCccchhchhhhhhhHHHHHH
Q 000331 155 AATFRQAVALIFDHVVRAESLPMGKFGSGAHITRTNSVTGDVSRSINHSESLEHEFASEGPSLRRETLTKAGKLGLRLLE 234 (1652)
Q Consensus 155 ~ATL~Qlv~~VF~rv~~ed~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~da~~vf~ 234 (1652)
+||+||+|..|||||..+++. .+..-+...+...++. +.-....+.+..+|++..|.
T Consensus 165 aAtlrQlV~~vFdrv~ies~~----~d~~l~sl~~~s~t~s-------------------l~aa~~~~~~l~~dI~~~~~ 221 (1610)
T KOG1848|consen 165 AATLRQLVLLVFDRVPIESDA----FDFILPSLTEASGTSS-------------------LEAALTALDPLQKDICVGFE 221 (1610)
T ss_pred HHHHHHHHHHHHHhccccccc----ccccchhhhccCCccc-------------------hhhcccccchHHHhHhcchH
Confidence 999999999999999965431 1100000000000000 00013456788899999999
Q ss_pred HHHHhhcCCCCCcc-cccchhHHhHHHHHHHHHHcCcccccCCHHHH--HHHHHHHHHHHHHhhccccC-----------
Q 000331 235 DLTALAAGGSASWL-HVNTLQRTFVLDILEFILSNHVSLFRMLVSYE--QVLRHQICSLLMTSLRTNVE----------- 300 (1652)
Q Consensus 235 dLc~L~~~~~p~~l-~~~~l~k~~~LELlesvL~n~~~~F~~~p~l~--~llr~~lc~lLi~~lssn~~----------- 300 (1652)
++|.+..+..++|| .+.+.++..|+|++|+++.+....+..|.+|. ++++..+||++.|++..++.
T Consensus 222 ~i~l~~~~~~~~~L~~Iee~~~s~~~elLesilks~~s~~dq~qdf~~a~ll~~~~~Py~~Rl~~~sv~~i~~l~~~ea~ 301 (1610)
T KOG1848|consen 222 NIQLMYPAIFDQLLAFIEESTKSPGLELLESILKSNASKSDQIQDFAPAELLALNVVPYAERLLLRSVDLIQKLACHEAV 301 (1610)
T ss_pred HHHHhcccccHhHHhcchhccccchhhhhhhhhhcchhhhHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHhccHHH
Confidence 99999999999998 68899999999999999999999999999999 99999999999997654421
Q ss_pred ------------------CCCCCCCccHH--HHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 000331 301 ------------------NEGETGEPYFR--RLVLRSVAHIIRLYSSSLITECEVFLSMLVKVTFLDLPLWHRILVLEIL 360 (1652)
Q Consensus 301 ------------------~~~~~~~~~F~--~~~lRi~~~Li~~~~~~L~~E~EvfLs~Li~~l~~~~~~w~r~L~LEvl 360 (1652)
..+..+...|+ .-..+.+......|-..+-.++++|++.+++.-..+.+.|+|.+++|++
T Consensus 302 ~~~ev~lnvi~slisn~~ll~~~~~~s~~~~kdlv~~l~~~v~l~~~~i~v~~~v~la~~lk~~s~~~~~~p~~l~~~~~ 381 (1610)
T KOG1848|consen 302 VNEEVLLNVIKSLISNTNLLFDPESLSYPCSKDLVWKLAVSVLLYVLSIGVPVAVFLASLLKFDSMDLELWPRFLDFLFL 381 (1610)
T ss_pred HHHHHHHHHHHHHHHhcccccchhhccccccHHHHhHHhHHHheeecccCcchhhhHHHHhhhhhcCcccCccHhHHHhh
Confidence 00001111121 1123334444445667788999999999999999999999999999999
Q ss_pred HHhhcChHHHHHHHHhcCCCCCCcchHHHHHHHHHHHhhcccc-------ccCchhHHHhhhh-cccCcccccccccccc
Q 000331 361 RGFCVEARTLRLLFQNFDMNPKNTNVVEGMVKALARVVSSVQF-------QETSEESLSAVAG-MFSSKAKGIEWILDND 432 (1652)
Q Consensus 361 ~~l~~dp~ll~~iy~nYD~~~~~~nI~~~lv~~L~r~~~~~~~-------~~~s~e~l~~~~g-~f~~k~kGi~~ll~~d 432 (1652)
++++.+++.++.+++|+||++.++++++..+..+.+++.-..+ ++...+..+.+.| .|..|.+||+|-.+.|
T Consensus 382 ~siv~k~dsi~~~trn~diktk~thlldk~~~plan~vy~~lv~ti~nsi~e~l~k~s~esg~~eFt~k~k~Ie~~~dnd 461 (1610)
T KOG1848|consen 382 KSIVPKNDSIQIFTRNFDIKTKVTHLLDKEILPLANFVYKELVGTISNSIQEMLNKSSIESGGSEFTSKEKGIELREDND 461 (1610)
T ss_pred ccCCCCchhhHHHHhhcccCcchHHHHhhcccccchhHHHHHHHhhhHHHHHHHHHhHHhhcCccchhhhcCceeeccCc
Confidence 9999999999999999999999999999999999998874321 1222233333334 7888889999876665
Q ss_pred cCCCcccCCchhhHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCcCCc-hhHHHHHHHHHhhHHHHHHHH
Q 000331 433 ASNAAVLVASEAHSITLAIEGLLGVVFTVATLTDEAVDVGELESPRCDYDPLPKCMGE-TAVLCISMVDSLWLTILDALS 511 (1652)
Q Consensus 433 ~~~~~~ll~~Ea~~I~~~~e~~a~~i~sv~~L~~~~~~~g~~~~p~~e~~~~~~~~~~-~~~~~~~m~~~~W~~iLaalS 511 (1652)
+....+++--+.-.+..+.|++..+.++++.+...+.+.+.+..+.....+...-.++ .....+.|+.+.|..++++++
T Consensus 462 s~stavl~~l~~~~~~li~e~~~ss~~avSt~~~~a~~v~~l~~~~~~~s~k~~l~~~~kLe~i~~a~~snq~tildalk 541 (1610)
T KOG1848|consen 462 SMSTAVLLQLSFSNKVLIPEGLYSSRMAVSTLLKRAQDVLHLYIEDEVLSNKCPLPRQTKLEIIFDAVLSNQSTILDALK 541 (1610)
T ss_pred hHHHHHHHHHHhhhhhhccccchhhhHHHHHHHHHHHHHHHHhhhhhhhccCCccccceeehhHHHHHhhccccHHHHhh
Confidence 4433333222222333333444444444444433332222221111111111111111 233456789999999999999
Q ss_pred HhHhhccCHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCCCCCcccccc-cccCCCCCC------------
Q 000331 512 LILSRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNESDRRSA-VLQSPGSKR------------ 578 (1652)
Q Consensus 512 ~~l~~s~De~~~~~lL~gfq~~a~iag~l~L~~~rDafl~sL~k~t~~~~~~~~~~~~-~~~sp~s~~------------ 578 (1652)
..+..+.|+.+.+.++.+++.++..||..+-+++..+++..||+|....+...+.... +.++|..++
T Consensus 542 s~l~~st~e~is~qvl~s~stltsa~~~~~Ade~lna~~~~l~~~~~~s~r~vs~lr~l~s~Spv~gr~~~sew~~dfet 621 (1610)
T KOG1848|consen 542 STLPESTDEIISAQVLASYSTLTSACGRCSADEVLNALKEALVPFKDFSPRPVSRLRCLNSESPVVGRKMGSEWKIDFET 621 (1610)
T ss_pred hhccccccchhhHHHHhchHHHHhccccccchhHHHHHHHhhCCcccCCccHHHHHhhccccCccccccCCcceEEEEee
Confidence 9999999999999999999999999999999999999999999999754322111000 001111110
Q ss_pred --------------ccccccccCCCCCCHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHhcC-CCCCCccccc
Q 000331 579 --------------SESLVDQKDNIVLTPKNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHS-PHATTQEVST 643 (1652)
Q Consensus 579 --------------~~~~~~~~~~~~l~~Kni~~lraLl~la~~lG~~L~~SW~~IL~tlq~l~~~~~~-p~~~~~~~~~ 643 (1652)
.-+.+-+..++.++.||+++.|+++++++.+-+.++.+|..++.|...+++.... |..+.+...+
T Consensus 622 w~~~t~~~~~~p~~~~~s~ss~~~v~lT~snvqa~rsf~t~~~~~~~sy~~sw~llm~t~~~ls~~~~m~p~qt~l~v~t 701 (1610)
T KOG1848|consen 622 WDKATIILNRSPTSKHLSTSSLNRVNLTNSNVQASRSFSTLMDYELVSYKNSWSLLMYTTSSLSQPAYMEPLQTLLAVIT 701 (1610)
T ss_pred ccceeeEecCCCCCccccccCCCccccccchHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcchhhcCHHHhhHHHHh
Confidence 0011122356789999999999999999999999999999999999999988765 6655544433
Q ss_pred ccccccccc---c-CccchhhHHHHHHHHHHhhccCCChHHHHHHHHHHHHhhHHhhcCCCCCCCCCCCCCCCCcchhHH
Q 000331 644 ASSKLARES---S-GQYSDFNVLSSLNSQLFESSALMHISAVKSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSISFSVE 719 (1652)
Q Consensus 644 ~~p~~~~~~---~-~~~~d~~il~si~~~LFesS~~L~~~sl~~fv~ALc~lS~e~l~~~~~~~~~~~~~~~~~~~F~L~ 719 (1652)
..+..+.+. . ..+.|..+++++.+++|++++.++..++..+++||.+++++.+.....
T Consensus 702 ~~~~hp~~p~~~~~~~ynd~~~lssl~~~v~~~~a~~~~ss~~slL~ali~ls~~sli~~~~------------------ 763 (1610)
T KOG1848|consen 702 SSSVHPIQPLTAPRQSYNDDLLLSSLKNSVYKTSANRSISSGISLLRALIELSYSSLILETV------------------ 763 (1610)
T ss_pred cCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhh------------------
Confidence 333322221 1 346788889999999999999999999999999999999987644321
Q ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhccchhhHH
Q 000331 720 RMISILVNNLHRVEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSI 799 (1652)
Q Consensus 720 kL~ev~~~N~~R~~~iW~~l~~hli~v~~~~~~~lr~~Avd~L~~Li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~l 799 (1652)
+..|..|....|..+..|+.....++|+..+..|++.|++.+...+++..+...+.+......++..+...+..-
T Consensus 764 -----~~~sslr~~~~~l~v~~~~~~l~e~snq~~~~naa~~l~t~~n~vl~s~~~~~asals~da~~dv~sk~ti~~es 838 (1610)
T KOG1848|consen 764 -----CSCSSLRFLDSKLDVSGWSLILKELSNQFKIINAAPELRTRANNVLASILVDVASALSNDASPDVYSKQTIFFES 838 (1610)
T ss_pred -----ccccccccccchhhhhHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhcccccchhccceeeHhh
Confidence 112345666777777777777777777777777777777777766665544432333332233332222233334
Q ss_pred HHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCcccCChHHHHHHHhhhhcc---cchhHHHHHHHHHHHHHhccC
Q 000331 800 ECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADA---SEKDLITLGFQSLRFIMNDGL 876 (1652)
Q Consensus 800 q~~ll~pl~~L~~~~~~~dIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~---~~~~lv~~aF~~L~lI~~dfl 876 (1652)
+.+++..+...+..++.+|+|...++++.+|+|++|+.+-+||..||++|+++++. +++++|+.||++|++|++|||
T Consensus 839 ~~~~l~sl~v~~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfL 918 (1610)
T KOG1848|consen 839 LGMLLPSLEVSDNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFL 918 (1610)
T ss_pred hHHHHHHHHHHHhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcch
Confidence 44666566666778899999999999999999999999999999999999988764 488999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHccCCCcchhHHHHHHHHHHHHHHHcccCCCchhhhhhhhcccCCCccccCcchhhhhhhcc
Q 000331 877 SSIPTDCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSN 956 (1652)
Q Consensus 877 ~~Lp~~~~~~lV~~L~~F~~q~~dlNISLtAi~llW~isD~L~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~e~~~~~l 956 (1652)
++||.+|+..|||++..|++|++|+||||||||+||+++||+++++. +..++.+..+ ..|+..++.
T Consensus 919 qSLp~sci~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~--S~sed~~~~~------------~~e~~~ss~ 984 (1610)
T KOG1848|consen 919 QSLPTSCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMF--STSEDSCAYN------------SVEDLYSSM 984 (1610)
T ss_pred hcCChHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhh--ccchhhhhhc------------chhhhcccc
Confidence 99999999999999999999999999999999999999999997422 1112211110 011122111
Q ss_pred ccccCCCCCcchhhhhHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHhHHHhhhhhhcc
Q 000331 957 LDDQNHSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAAT 1036 (1652)
Q Consensus 957 ~~~~~~~~~~~~~~~LW~~LL~~L~~L~~D~R~EVRn~AIqTLfril~s~g~~ls~~~W~~~~~~VLFPLL~~l~~~~~~ 1036 (1652)
+ .+-..++.+|+.||..|+++|.|+|+||||||+||||||+.+||+.|++.+|+.|+|+|++|||+......
T Consensus 985 ~------~~~~l~e~lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~-- 1056 (1610)
T KOG1848|consen 985 K------SKEILPEVLWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQN-- 1056 (1610)
T ss_pred c------chhhhhhHHHHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccc--
Confidence 1 12245679999999999999999999999999999999999999999999999999999999999886422
Q ss_pred CCcccccccccCcCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHcCC
Q 000331 1037 SSKDEWQGKELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNG 1116 (1652)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~~~~~ihhsr~t~~k~W~ET~vlal~gl~klf~~~~~~L~~l~~F~~~W~~lL~~l~~~~~~~ 1116 (1652)
.+||+++++ +|||.||.+++++|++|+|..||..|..+++|.+.|+.+|+|+.++...+
T Consensus 1057 --~~ewngkei-------------------qkqwtet~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~ 1115 (1610)
T KOG1848|consen 1057 --VSEWNGKEI-------------------QKQWTETSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDI 1115 (1610)
T ss_pred --hhhhcchhH-------------------hhhhhhhhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcC
Confidence 356777653 59999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCCChh---HHHHHHHHHHHhhcCCCCCCCCCCcchhHHHHHHHHHHHH--HHHhhCC
Q 000331 1117 SKEVSLAAINCLQTTVLSHSTKGNLPVA---YLNSVLDVYEYALQKSPNYSDNAAGKVKQEILHGLGELYV--QAQKMFD 1191 (1652)
Q Consensus 1117 ~~els~a~~~~L~~lL~~~~~~~~~~~~---~~~~~~~~w~~~~~~~~~~~~~~~~~~~q~~l~~f~~ly~--~~~~~~~ 1191 (1652)
+.+++.++++|||+++......++++-. ....++..|+.+++.++.+..+...++.||.+++|+..|+ .+++.+.
T Consensus 1116 s~e~slsai~~~qell~sii~~~~ln~~~~~k~n~vf~~y~~~~~~~ssas~~t~~kv~~eiltgl~~~vqs~sk~d~~~ 1195 (1610)
T KOG1848|consen 1116 SPEISLSAIKALQELLFSIIEFGKLNATFTLKINLVFINYGRFCEVSSSASERTLAKVSQEILTGLIESVQSLSKADNFG 1195 (1610)
T ss_pred ChHhHHHHHHHHHHHHHHHhhhccccchHHHHhhhhhhhHhhhcccccccchhHHHHHHHHHHhhhHHHHHHHHhhcchh
Confidence 9999999999999999999998888766 5566778888777777666666678899999999998888 4556777
Q ss_pred HHHHHHHHHHHHHHHHcccCCCCCCccccCCCCHHHHHHHHhccccCCCccchhhHHHHHHHHHccCCCCCCCC--CCCC
Q 000331 1192 DRMYGQLLAIIDLAVRQTMITHDNYEIEFGHVPPVLRTILEILPLLSPTEQLCSMWLVLLREILQYLPRSDSPL--QKKE 1269 (1652)
Q Consensus 1192 ~~~~~~~l~~l~~~~~~~~~~~~~~~~d~~~~s~lQ~~vl~~l~~i~~~~~~~~~~~~~~~~l~~f~~~~~~~~--~~~~ 1269 (1652)
.+.++..+..++.++.||.++. +..|... ||+|.+|++.++.+-+++ ...+|..++.....+.+.+|.-. ++..
T Consensus 1196 ~e~~~~slll~~kai~yp~~~~--ft~d~hv-psvq~avls~ld~l~~~~-~~~~~lvLl~~sthltpafdt~l~~~k~~ 1271 (1610)
T KOG1848|consen 1196 IEEIKDSLLLVRKAIFYPESTS--FTLDVHV-PSVQLAVLSLLDLLISDK-FKLNHLVLLLWSTHLTPAFDTRLKITKKL 1271 (1610)
T ss_pred HHHHHHHHHHhhhccccCCCch--hhhhccC-ChHHHHHHhhcchhccCc-cccchhHHHHHhhhhhhhhhhhhhhhhcc
Confidence 8899999999999999998776 8888776 889999999999998843 45666677777677776665322 1110
Q ss_pred CCCCCCCCCCcccccccccccCCCCCCCCCCcchhhhhhhccCCcccccchHHHHHhHhHHHHHHhhhcchhhhhhhhHH
Q 000331 1270 DEEEPPSTSDNIHDVHVRTKYDKPNGTAPTTPKDASALSESSGSVTAAIPNHLFAEKLIPVVVDLFLKAPAVEKCIIFPE 1349 (1652)
Q Consensus 1270 ~~~~~~~t~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~ 1349 (1652)
+++. +..-.++-|...+ + ..-...+.-++++.++-....+++++.+.++--+++
T Consensus 1272 -~~g~------------~~~e~~~das~et----l---------~~~s~~t~rna~nkv~~~g~~~l~a~a~~~i~~f~e 1325 (1610)
T KOG1848|consen 1272 -GPGL------------PKEEKTIDASLET----L---------ICLSKKTFRNAENKVENHGLDFLNAGAMQHIFEFLE 1325 (1610)
T ss_pred -CCCC------------chhhhcccchhhh----h---------HHhhHHHhhhchhhhchhhHHHHhhhHHHHHHhhHH
Confidence 0000 0000000000000 0 000112333888888888777888888877776666
Q ss_pred HHHhhccccccc-CCCCCCcchHHHHHHHHHHHHHhhhhHhhh-----hcccccCChHHHHHhHHHHHHHhhhhhcccCC
Q 000331 1350 IIQNLGRCMTTR-RDNPDSSLWRLAVEGFNHILVDDVTKLAAN-----FWQDMKISRPARLRVWKEVADVYEIFLVGYCG 1423 (1652)
Q Consensus 1350 i~~~l~~~~~~k-~~~~~~~~Wk~a~~~~~~il~~~l~~~~~~-----~~~~~~~~~~~~~~~W~~v~~~~~~~l~~~~~ 1423 (1652)
...-+.+++-+. +++|+.|+|++|..+|++..-.+....... ....+.+...+...+|++..|++++++.++|+
T Consensus 1326 v~~rlkr~~~t~~r~npe~piwvlas~cF~~l~~~~fk~l~~~~~~~laet~l~lflt~~it~~rinpevd~~~~~~~cd 1405 (1610)
T KOG1848|consen 1326 VPMRLKRRCPTASRVNPELPIWVLASKCFVRLMINCFKDLKGSDAIELAETMLCLFLTVEITNSRINPEVDYEYVWSLCD 1405 (1610)
T ss_pred HHHHHHHHcccccccCCCCceeeeeHhhHHhhHHHHHHHhccccccchhhhhhheeeEEEeeeeeeCcchhhhhhhhhcc
Confidence 666666554444 888999999999999999887775543322 00001122345567899999999999999988
Q ss_pred -C--CCCCCCCCchhccccchhhchHHHHHhhhhccCCCCCCChHhhhhhHhhhhhcccCCCCCCccccccCccchhh--
Q 000331 1424 -R--ALPSNSLSAVALSGADESLEMSILDILGDKILKSPIDAPFDVLQRLISTIDRCASRTCSLPVETVELMPAHCSK-- 1498 (1652)
Q Consensus 1424 -~--~~~~~~~~~~~~~~~dE~~d~~~~~~l~~~i~~~~~~~p~~~~~~l~~l~~~~~~r~~~~~~~t~~~~~~~r~r-- 1498 (1652)
+ +..+..+++.... .+|.+++++++.+++.++.+..|.|.+.++|+++++++++.| ++.++.+.+..|+|..|
T Consensus 1406 ~e~~~~ksl~l~a~~~l-~ne~led~~i~~~~d~~l~~~~d~prn~l~rlistl~r~sqk-~ss~~fs~~~~~~hn~Rf~ 1483 (1610)
T KOG1848|consen 1406 FENSSLKSLHLLAKPHL-QNECLEDEVIQYYIDLCLGSFYDQPRNTLDRLISTLNRDSQK-ASSNFFSSTESPVHNRRFR 1483 (1610)
T ss_pred cccchhhhhhhccchhh-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHh-hhccCccccccCccChhHH
Confidence 3 2344556667888 999999999999999999999999999999999999999988 77777777777777666
Q ss_pred hHHHHHHHHhhhhcCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCChhHHHHHHHHHHHHHhccc
Q 000331 1499 FSLACLHKLFSLSSSDNEASKWNLTRAEVSKISITVLMGRCEYILNRFLIDENDLGERNFPAARLEEIIFILQELARLKI 1578 (1652)
Q Consensus 1499 ~a~~c~d~Lf~l~s~~~~~~~~~~~~~~~a~~~~p~Ll~Rc~~~L~~yi~D~~l~G~~P~P~~r~~El~~vL~~l~~L~~ 1578 (1652)
.+|.||+.||+.... ..+..|..+++++.|+|..||..+|++|++||...|..|+|+.|..||+++|++|..|..
T Consensus 1484 la~~Cf~~ll~ds~s-----~~~ntr~~vsk~~~p~L~aRc~~~Lsry~~Des~~G~lplpksr~~Eiit~lq~l~~l~~ 1558 (1610)
T KOG1848|consen 1484 LAVDCFSILLDDSNS-----SYENTREKVSKTIRPILQARCCWSLSRYVADESVSGYLPLPKSREMEIITVLQCLNNLPS 1558 (1610)
T ss_pred HHHHHHHHHHHhcch-----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchHHHHHHHHHHHHHHHHhh
Confidence 566699999987753 123489999999999999999999999999999999999999999999999999999988
Q ss_pred CcccccCCCCCcccccccccCcCCCcccchhhhhhhhhhheecchhHHHHHHHHH--HHHHhh
Q 000331 1579 HPDTASALPLHPVLKSGLAMDENSDKRPHLLVLFPSFCELVISREARVRELVQVL--LRLITK 1639 (1652)
Q Consensus 1579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~hL~~lyp~l~~~~~~~~~~v~~ll~~~--l~~vg~ 1639 (1652)
.. +.+|.+ . +..++.||..|+|.+|+.++++.+++....|.+ .+.+..
T Consensus 1559 ~L------~~np~l------~-n~~~~~hl~~lsPs~~~~~p~~h~~~~l~~qvL~~i~~~~t 1608 (1610)
T KOG1848|consen 1559 LL------YSNPIL------Y-NLRKAYHLTNLSPSATSLNPAIHGQLTLKNQVLNAILGFTT 1608 (1610)
T ss_pred cc------ccCchh------h-hHHHHHHHHhccHHHHhhhhhhhcccHHHHHHHHHHHhhhc
Confidence 83 122221 1 267899999999999999987777766555543 444433
No 2
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=100.00 E-value=2.4e-139 Score=1403.72 Aligned_cols=1062 Identities=21% Similarity=0.325 Sum_probs=818.3
Q ss_pred HHHHHHHHHHHHHH-HhhcChhHHHHHHHHHHHHhCCCCCC--------------c--------------ccCchhHHHH
Q 000331 4 MAVLESDLRALSAE-ARRRYPAVKDGAEHAILKLRSLSSPS--------------E--------------LAQSEDILRI 54 (1652)
Q Consensus 4 ~~~L~~dL~~L~~E-skRk~~~lk~A~e~sl~~Lk~~~~~~--------------~--------------l~~~~~~l~P 54 (1652)
-.++.+-|..+++. ..|||+++|+||+++++.||...... . ..+++.++.|
T Consensus 11 ~~~~~~ale~i~~~k~~rk~~~l~~a~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~p 90 (1780)
T PLN03076 11 GKVVSPALEKIIKNASWRKHSKLAHECKAVIERLNSPEKNPPSTSSAAADSASASSLPGPLHDGGSIEYSLAESELILSP 90 (1780)
T ss_pred hHHHHHHHHHHHhhHHhhccHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccCHHHHHHH
Confidence 35788889988833 24789999999999999999765320 0 1256779999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHhcCCCCc----------chHHHHHHHHHcccCCCCchHHHHHHHHHHHHHcCCCCC
Q 000331 55 FLMACEVRTVKLSVIGLSCIQKLISHDAVAP----------SALKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLHP 124 (1652)
Q Consensus 55 fllaC~skn~kl~~iaL~~lqkLi~~~~i~~----------~~l~~Il~~l~~~~~~~~e~VqLkILQ~L~~l~~s~~~~ 124 (1652)
|.+||+||++||+.+||+||||||+|++|.. ..++.+++++|+|.+.+||.|||||||+|+++++++.+.
T Consensus 91 l~lac~s~~~ki~~~ALdcl~KLis~~~i~~~~~~~~~~~~~lid~~i~~Ic~c~~~~de~iqLqilk~Ll~~v~s~~~~ 170 (1780)
T PLN03076 91 LINACGTGSAKIVDPALDCIQKLIAHGYLRGEADPSGGPEALLLAKLIESVCKCHDLGDEGIELLVLKTLLSAVTSTSLR 170 (1780)
T ss_pred HHHHHcCCCccHHHHHHHHHHHHHHHhhcCCCCCCCCCccccHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHcCCCce
Confidence 9999999999999999999999999999921 458999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhhhccccCChHHHHHHHHHHHHHHHHHHHHhhhhccc-CCCCCC---------C-CCCCcccccccc
Q 000331 125 ENEDNMAQALGICLRLLENNRSSDSVRNTAAATFRQAVALIFDHVVRAES-LPMGKF---------G-SGAHITRTNSVT 193 (1652)
Q Consensus 125 ~~g~~L~~~l~~C~~L~~~sk~~~~v~~TA~ATL~Qlv~~VF~rv~~ed~-~~~~~~---------~-~~~~~~~~~~~~ 193 (1652)
+||+.|.+++++||++|..||++ ++++||+|||+|||..||+||+.... .+..+. . +....+....++
T Consensus 171 vhg~~LLkaVR~cyni~l~Sks~-~nq~tA~atLtQmv~~VF~R~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1780)
T PLN03076 171 IHGDCLLQAVRTCYDIYLGSKNV-VNQTTAKASLIQMLVIVFRRMEADSSTVPIQPIVVAELMEPAEKSDSDTSMTQFVQ 249 (1780)
T ss_pred eEHHHHHHHHHHhheeeecCCcH-HHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccccchhhhhh
Confidence 99999999999999999999999 99999999999999999999974211 100000 0 000000000000
Q ss_pred ccccc----------------------c-----------cCCC---------Ccccc--c-------ccCCCCcc-----
Q 000331 194 GDVSR----------------------S-----------INHS---------ESLEH--E-------FASEGPSL----- 217 (1652)
Q Consensus 194 ~~~~~----------------------~-----------~~~~---------~~~~~--~-------~~~~~~~~----- 217 (1652)
+..++ . .+.+ +.... . ...+...+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (1780)
T PLN03076 250 GFITKIMQDIDGVLNPATAGKSSGSGAHDGAFETTATVETTNPADLLDSTDKDMLDAKYWEISMYKSALEGRKGELADGE 329 (1780)
T ss_pred hhhhhhccccccccCcccccccccccccccccccccccCCCCcchhhccccccccccccccccccccccccccccccccc
Confidence 00000 0 0000 00000 0 00000000
Q ss_pred --c--hhc---hhhhhhhHHHHHHHHHHhhcCCCCCcc--cccch-hHHhHHHHHHHHHHcCcccccCCHHHHHHHHHHH
Q 000331 218 --R--RET---LTKAGKLGLRLLEDLTALAAGGSASWL--HVNTL-QRTFVLDILEFILSNHVSLFRMLVSYEQVLRHQI 287 (1652)
Q Consensus 218 --~--~~~---~~~~~~da~~vf~dLc~L~~~~~p~~l--~~~~l-~k~~~LELlesvL~n~~~~F~~~p~l~~llr~~l 287 (1652)
. ... .....+|||+||+.||+|+.++.|..- +...+ +|+++||||.++|+|+|++|.+||.|++++|++|
T Consensus 330 ~~~~~~~~~~~~~~~~kDAflvFr~lCkLs~K~~~~~~~~d~~~~rsKllsL~Li~~ile~~g~~f~~~~~fi~~ik~~L 409 (1780)
T PLN03076 330 VEKDDDLEVQIGNKLRRDAFLVFRALCKLSMKTPPKEALADPQLMRGKILALELLKILLENAGAVFRTSDRFLGAIKQYL 409 (1780)
T ss_pred ccccchhhhhhhhhhhhhHHHHHHHHHHHhCCCCCCCccccHHHHHHHHHHHHHHHHHHhcccHhhhcCHHHHHHHHHHH
Confidence 0 000 012579999999999999998766332 22344 8999999999999999999999999999999999
Q ss_pred HHHHHHhhccccCCCCCCCCccHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHH-HHHccCC--CCHHHHHHHHHHHHHhh
Q 000331 288 CSLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSML-VKVTFLD--LPLWHRILVLEILRGFC 364 (1652)
Q Consensus 288 c~lLi~~lssn~~~~~~~~~~~F~~~~lRi~~~Li~~~~~~L~~E~EvfLs~L-i~~l~~~--~~~w~r~L~LEvl~~l~ 364 (1652)
|..|+++..++ ..+.| .+++|||+.|+.+||.+||.|+|+|++.+ +++++.. .+..||+++||+|.+||
T Consensus 410 c~sL~~n~~S~-------~~~vf-~lsl~If~~L~~~~R~~LK~eievF~~~I~l~ile~~~~~s~~qK~~~L~~L~~lc 481 (1780)
T PLN03076 410 CLSLLKNSASS-------LMIIF-QLSCSIFISLVSRFRAGLKAEIGVFFPMIVLRVLENVAQPNFQQKMIVLRFLDKLC 481 (1780)
T ss_pred HHHHHHHhcCC-------CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Confidence 97666654431 35677 48999999999999999999999999986 5666653 34799999999999999
Q ss_pred cChHHHHHHHHhcCCCCCCcchHHHHHHHHHHHhhcccc---------c------------------------------c
Q 000331 365 VEARTLRLLFQNFDMNPKNTNVVEGMVKALARVVSSVQF---------Q------------------------------E 405 (1652)
Q Consensus 365 ~dp~ll~~iy~nYD~~~~~~nI~~~lv~~L~r~~~~~~~---------~------------------------------~ 405 (1652)
+||+++++||+|||||.++.||||+|++.|+|++++.+. + +
T Consensus 482 ~dp~~lveiyvNYDCD~~~~NifE~lv~~Lsk~a~~~~~~~~~~~~~~qe~~lk~~aLecLv~il~sl~~w~~~~~~~~~ 561 (1780)
T PLN03076 482 VDSQILVDIFINYDCDVNSSNIFERMVNGLLKTAQGVPPGVETTLLPPQEAAMKLEAMKCLVAILRSMGDWMNKQLRLPD 561 (1780)
T ss_pred hCccHHHHHHhccCCCCCCchHHHHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 999999999999999999999999999999999974210 0 0
Q ss_pred C-----c--------------------------------------hhH----------HHhhhhcccCccc-cccccccc
Q 000331 406 T-----S--------------------------------------EES----------LSAVAGMFSSKAK-GIEWILDN 431 (1652)
Q Consensus 406 ~-----s--------------------------------------~e~----------l~~~~g~f~~k~k-Gi~~ll~~ 431 (1652)
. . .+. ++.++..||.||| ||+|+..+
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~K~~l~~g~~~FN~~Pk~Gi~~L~~~ 641 (1780)
T PLN03076 562 PASLKKLDAVENNLEPGSLPVANGNGDENGEGSDSHSELSSETSDAATIEQRRAYKLELQEGISLFNRKPKKGIEFLINA 641 (1780)
T ss_pred ccccccchhhccccccccccccccccccccccccccccccccCCcHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHc
Confidence 0 0 000 1236678999997 99886432
Q ss_pred -----c---------------c---------------------------CCCcc-----------cCCchhhHHHHHHHH
Q 000331 432 -----D---------------A---------------------------SNAAV-----------LVASEAHSITLAIEG 453 (1652)
Q Consensus 432 -----d---------------~---------------------------~~~~~-----------ll~~Ea~~I~~~~e~ 453 (1652)
+ | .+.++ .+|||+|+|+|+||.
T Consensus 642 ~~i~~~p~~iA~FL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~yv~~fdF~g~~~d~ALR~fL~~FrLPGEaQ~IdRime~ 721 (1780)
T PLN03076 642 NKVGESPEEIAAFLKDASGLNKTLIGDYLGEREDLSLKVMHAYVDSFDFQGMEFDEAIRAFLQGFRLPGEAQKIDRIMEK 721 (1780)
T ss_pred CCCCCCHHHHHHHHHhCCCCCHHHHHHHHcCCChHHHHHHHHHHHhCCcCCCCHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 1 1 01111 289999999999999
Q ss_pred HHH------------------HHHHHHhcccc--------------------cccCCCCCCCC-----------------
Q 000331 454 LLG------------------VVFTVATLTDE--------------------AVDVGELESPR----------------- 478 (1652)
Q Consensus 454 ~a~------------------~i~sv~~L~~~--------------------~~~~g~~~~p~----------------- 478 (1652)
|++ ++|+++|||++ ++|+|+.-++.
T Consensus 722 Fa~rY~~~Np~~f~~~D~~yvLaysiIMLnTDlHnp~vk~kMt~~~Fi~n~rgin~g~dlp~e~L~~iY~~I~~~ei~~~ 801 (1780)
T PLN03076 722 FAERYCKCNPKAFSSADTAYVLAYSVIMLNTDAHNPMVKNKMSADDFIRNNRGIDDGKDLPEEFMRSLYERISKNEIKMK 801 (1780)
T ss_pred HHHHHHHhCCCcCCCHHHHHHHHHHHHHHhHHhcCCccCCCCCHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHhCcccCc
Confidence 997 46799999887 24555311100
Q ss_pred CCCCC-----C-C--C-------------------------------------c---CC------chhHHHHHHHHHhhH
Q 000331 479 CDYDP-----L-P--K-------------------------------------C---MG------ETAVLCISMVDSLWL 504 (1652)
Q Consensus 479 ~e~~~-----~-~--~-------------------------------------~---~~------~~~~~~~~m~~~~W~ 504 (1652)
.|... . . + . ++ .+..++++||+.+|+
T Consensus 802 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~e~~~~~s~~l~~~~~~~~k~~~~~~~~~f~~a~~~~~~~~mfe~~W~ 881 (1780)
T PLN03076 802 EDDLVPQQKQSANSNRILGLDSILNIVIRKRGEDSYMETSDDLIKHMQEQFKEKARKSESVYYAATDVVILRFMVEVCWA 881 (1780)
T ss_pred ccccccccccccccchhhhhHHHHhHhhHHHHHHHHHHhHHHHHHHHHHHHHHhhccccCceeecchHHHHHHHHHHHHH
Confidence 00000 0 0 0 0 00 124467999999999
Q ss_pred HHHHHHHHhHhhccCHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCCCCCcccccccccCCCCCCcccccc
Q 000331 505 TILDALSLILSRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNESDRRSAVLQSPGSKRSESLVD 584 (1652)
Q Consensus 505 ~iLaalS~~l~~s~De~~~~~lL~gfq~~a~iag~l~L~~~rDafl~sL~k~t~~~~~~~~~~~~~~~sp~s~~~~~~~~ 584 (1652)
|++||+|..|+.++|+++++.||+||+.++|+||.|||+++||+|+++|||||.+.. |
T Consensus 882 p~laalS~~~~~s~d~~~~~~cL~G~~~~i~ia~~f~l~~~rdafv~~L~kfT~L~~------------~---------- 939 (1780)
T PLN03076 882 PMLAAFSVPLDQSDDEVVTFQCLEGFRHAIHVTAVMSMKTHRDAFVTSLAKFTSLHS------------P---------- 939 (1780)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHcCCCC------------h----------
Confidence 999999999999999999999999999999999999999999999999999998741 1
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHhcCCCCCCc-----------------cccccccc
Q 000331 585 QKDNIVLTPKNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHSPHATTQ-----------------EVSTASSK 647 (1652)
Q Consensus 585 ~~~~~~l~~Kni~~lraLl~la~~lG~~L~~SW~~IL~tlq~l~~~~~~p~~~~~-----------------~~~~~~p~ 647 (1652)
..++.||++|+|+||+||+.+||+|++||++||+|+++++++...+..... ......|.
T Consensus 940 ----~emk~Knv~Aik~ll~ia~~~Gn~L~~sW~~IL~cISqLerl~Li~~gv~~d~~~~~~~~~~~~~~~~~~~~~~p~ 1015 (1780)
T PLN03076 940 ----ADIKQKNIDAIKAIVSIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFAAPQNESDKSKQAKSPILPV 1015 (1780)
T ss_pred ----hhhhHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHhhcCCCcchhhhcccccccccccccccccccc
Confidence 127899999999999999999999999999999999999999753322100 00001111
Q ss_pred cc---------------c---cc-------cCc--cch-------hhHHH----HHHHHHHhhccCCChHHHHHHHHHHH
Q 000331 648 LA---------------R---ES-------SGQ--YSD-------FNVLS----SLNSQLFESSALMHISAVKSLLSALH 689 (1652)
Q Consensus 648 ~~---------------~---~~-------~~~--~~d-------~~il~----si~~~LFesS~~L~~~sl~~fv~ALc 689 (1652)
.. + +. ... .++ +.++. ..++++|++|++|+++||++|++|||
T Consensus 1016 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~idkIF~~S~~L~~eai~~fv~AL~ 1095 (1780)
T PLN03076 1016 LKRKGPGKLQYAAAAVRRGSYDSAGVGGKASGVVTSEQMNNLVSNLNMLEQVGSFEMNRIFTRSQKLNSEAIIDFVKALC 1095 (1780)
T ss_pred cccccccccchhhhhhcccccccccccccccccCCHHHHHHHHhhhhhhhhhhhhHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 10 0 00 000 011 11121 13489999999999999999999999
Q ss_pred HhhHHhhcCCCCCCCCCCCCCCCCcchhHHHHHHHHHHhhcc----chhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 000331 690 QLSHQCMIGTSSSFGPTSSQKIGSISFSVERMISILVNNLHR----VEPLWDQVVGHFLELADNSNQHLRNIALDALDQS 765 (1652)
Q Consensus 690 ~lS~e~l~~~~~~~~~~~~~~~~~~~F~L~kL~ev~~~N~~R----~~~iW~~l~~hli~v~~~~~~~lr~~Avd~L~~L 765 (1652)
++|.+++..++ .|++|+|+||+||+++||+| |..+|+.+++||+.++||+|..++.||+|+|+|+
T Consensus 1096 ~vS~eEl~~~~-----------~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQL 1164 (1780)
T PLN03076 1096 KVSMEELRSPS-----------DPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQL 1164 (1780)
T ss_pred HhhHHHHccCC-----------CCchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Confidence 99999987642 47899999999999999999 8999999999999999999999999999999999
Q ss_pred HHHHhccccccccccccCCCChhhhhccchhhHHHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCcccCChHHH
Q 000331 766 ICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSI 845 (1652)
Q Consensus 766 i~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~dIr~~iL~~L~~iL~~~g~~L~sgW~~I 845 (1652)
+++|++.++ ..++.||+.||+||+.+|.++.+.+||++|++|+.+|++.++++|++||++|
T Consensus 1165 s~kfle~eE-------------------L~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktI 1225 (1780)
T PLN03076 1165 SMKFLEREE-------------------LANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSM 1225 (1780)
T ss_pred HHHhcchhh-------------------hhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHH
Confidence 999996532 3457899999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcccchhHHHHHHHHHHHHHhccCCCCC---hhhHHHHHHHHHHHHccCCCcchhHHHHHHHHHHHHHHHccc
Q 000331 846 LELLRSVADASEKDLITLGFQSLRFIMNDGLSSIP---TDCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAKGL 922 (1652)
Q Consensus 846 f~IL~~v~~~~~~~lv~~aF~~L~lI~~dfl~~Lp---~~~~~~lV~~L~~F~~q~~dlNISLtAi~llW~isD~L~~~~ 922 (1652)
|+||++++.++++.+|+.||+++++|++||++.+| .+||.+||+||.+|++|+.++||||+|+++||.|++++.+..
T Consensus 1226 F~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~ 1305 (1780)
T PLN03076 1226 FMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGD 1305 (1780)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcc
Confidence 99999999989999999999999999999999776 699999999999999999999999999999999999998642
Q ss_pred CCCchhhhhhhhcccCCCccccCcchhhhhhhccccccCCCCCcchhhhhHHHHHHHHHHhccCCcHHHHHHHHHHHHHH
Q 000331 923 VHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQT 1002 (1652)
Q Consensus 923 ~~~~~~~k~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~LW~~LL~~L~~L~~D~R~EVRn~AIqTLfri 1002 (1652)
... . .+........+... ......+ ... ......++..+|+|||.+|.++|.|+|+|||++|++|||+|
T Consensus 1306 ~~~-~-~~~~~~~~~~~~s~-~~~~~~~-~~~-------~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~i 1374 (1780)
T PLN03076 1306 LGS-S-SRNKDKEAPPSSPQ-SGKDGKQ-ESG-------EFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDT 1374 (1780)
T ss_pred ccc-c-cccccccccccccc-ccccccc-ccc-------ccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 110 0 00000000000000 0000000 000 00112334589999999999999999999999999999999
Q ss_pred HHhccCCCCHHHHHHHHHHhHHhHHHhhhhhhccCCcccccccccCcCCCccchhhcccccchhhhhHH-HHHHHHHHHH
Q 000331 1003 LGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNTAQKQWD-ETLVLVLGGI 1081 (1652)
Q Consensus 1003 l~s~g~~ls~~~W~~~~~~VLFPLL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ihhsr~t~~k~W~-ET~vlal~gl 1081 (1652)
|.+||+.|++++|+.|||+||||||+.++.........++++.+++. .| .+.+.++|. ||+++|++++
T Consensus 1375 L~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~----------~~-~~~e~~~Wl~eT~~~AL~~l 1443 (1780)
T PLN03076 1375 LRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDG----------DQ-GELDQDAWLYETCTLALQLV 1443 (1780)
T ss_pred HHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccc----------cc-cchhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999998543322211122222211 11 235679996 9999999999
Q ss_pred HHHHHhhhhhhccccchHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhcCC
Q 000331 1082 ARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKGNLPVAYLNSVLDVYEYALQKS 1160 (1652)
Q Consensus 1082 ~klf~~~~~~L~~l~~F~~~W~~lL~~l~~~~~~~~~els~a~~~~L~~lL~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 1160 (1652)
+++|.+||+.|.. .-.++|+.+..|++++++.++..+.+||++++..++.+++ ++.|+.+.+.+.+++..+
T Consensus 1444 vdLft~fFd~L~~------~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~--~~~W~~i~~~~~~lf~~T 1514 (1780)
T PLN03076 1444 VDLFVKFYPTVNP------LLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFS--DEKWLEVVLSLKEAANAT 1514 (1780)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCC--HHHHHHHHHHHHHHHHHh
Confidence 9999999988753 5677999999999999999999999999999999998875 999999999998887643
No 3
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-101 Score=990.70 Aligned_cols=998 Identities=22% Similarity=0.336 Sum_probs=789.6
Q ss_pred HHHHhhcChhHHHHHHHHHHHHhCCCCCCcccCchhHHHHHHHHhcCCCchhHHHHHHHHHHHHhcCCCCcc--------
Q 000331 15 SAEARRRYPAVKDGAEHAILKLRSLSSPSELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAPS-------- 86 (1652)
Q Consensus 15 ~~EskRk~~~lk~A~e~sl~~Lk~~~~~~~l~~~~~~l~PfllaC~skn~kl~~iaL~~lqkLi~~~~i~~~-------- 86 (1652)
..-.+|+|+.++.+|+.+++++|+.. -.+.+.+.++.||.+||+||++||+..|++|+||||+||.+...
T Consensus 12 ~~~~~~~~s~l~~~~~~~~~~~~~~~--~~~~~~e~~~~p~~la~~t~~~ki~~~~~dc~~kli~~~~l~g~~~~~~~~~ 89 (1514)
T KOG0929|consen 12 ADAEWRKHSKLKKACKSALEELKANG--LSLAEAELYLLPFELACDTKSPKIVSPALDCLQKLIAYGHLTGESNDSGGPE 89 (1514)
T ss_pred hhhhhhhHHHHHHHHHHHHHhhhccc--CCCcchhhhhChHHhhcCCCCcchhccHHHHHHHHHHhhhccCCCCCCCCcc
Confidence 34456799999999999999999932 34677899999999999999999999999999999999998642
Q ss_pred --hHHHHHHHHHcccCCCCchHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHhhhccccCChHHHHHHHHHHHHHHHHH
Q 000331 87 --ALKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQALGICLRLLENNRSSDSVRNTAAATFRQAVAL 164 (1652)
Q Consensus 87 --~l~~Il~~l~~~~~~~~e~VqLkILQ~L~~l~~s~~~~~~g~~L~~~l~~C~~L~~~sk~~~~v~~TA~ATL~Qlv~~ 164 (1652)
.+..+++++|.|.+..+|.+||+++++|++.+++..+.+||+.|..++++||++|.+| + ++++||.|||.||+..
T Consensus 90 ~~l~~~~~~~vc~~~~~~~e~~elq~~k~lL~av~s~~~~i~~~~ll~~vr~c~~iyl~s--~-~nq~~ak~~L~qml~~ 166 (1514)
T KOG0929|consen 90 DLLIDKIIEAVCKCFDGLDESVELQVLKALLAAVTSQHIEIHGDSLLLIVRTCYNIYLGS--P-INQTTAKATLTQMLNI 166 (1514)
T ss_pred hhHHHHHHhHhhhccCCCchhhhHhHHHHHHHHHhccceeecCcchHHHHHHHHHHHhcC--c-ccchHHHHHHHHHHHH
Confidence 3799999999998877999999999999999999888999999999999999999987 6 8999999999999999
Q ss_pred HHHhhhhcccCCCCCCC------CCCCcccccc--------------ccccccc-ccCCC---------Cccccc---cc
Q 000331 165 IFDHVVRAESLPMGKFG------SGAHITRTNS--------------VTGDVSR-SINHS---------ESLEHE---FA 211 (1652)
Q Consensus 165 VF~rv~~ed~~~~~~~~------~~~~~~~~~~--------------~~~~~~~-~~~~~---------~~~~~~---~~ 211 (1652)
||.|+..+ ..+..+.. ....+..+.. ...+... ...++ +..++. ..
T Consensus 167 vf~~~e~~-~~~~~~i~vs~~~~~~~~~~s~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (1514)
T KOG0929|consen 167 VFRRMEED-SSDESQILVSELLRVSDDPSSTEFVQQFIDSIMEVLVASPEDVGLTEMLDDNVNENSKTGDSLSLRDAESP 245 (1514)
T ss_pred HHHHhhhc-cCcccccccccccccCCCcchhHHHHHHHHHHHHhccCCccccccccccccccccccccCcccccCccccc
Confidence 99999853 11100000 0000000000 0000000 00000 000000 00
Q ss_pred CC-C--Ccc-chhchhhhhhhHHHHHHHHHHhhcCCCCCc---ccccch-hHHhHHHHHHHHHHcCcccccCCHHHHHHH
Q 000331 212 SE-G--PSL-RRETLTKAGKLGLRLLEDLTALAAGGSASW---LHVNTL-QRTFVLDILEFILSNHVSLFRMLVSYEQVL 283 (1652)
Q Consensus 212 ~~-~--~~~-~~~~~~~~~~da~~vf~dLc~L~~~~~p~~---l~~~~l-~k~~~LELlesvL~n~~~~F~~~p~l~~ll 283 (1652)
.+ . +.. .+..-....+|||+||+.||+|+.+..+.- .+.+ + +|+++|||+.++|+|++++|.++..|...+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~Daflvfr~Lckls~k~~s~~~~d~~s~-~R~k~lsl~ll~~il~~~~~vf~s~~~fi~ai 324 (1514)
T KOG0929|consen 246 ESESERDDDSERSSQNKLQRDAFLVFRALCKLSMKPLSSEESDTQSH-MRSKLLSLELLKSILENSGSVFRSNEHFIDAI 324 (1514)
T ss_pred ccccccCcchhhccccHHHHhHHHHHHHHHHhhCCCCCCCCCChHHH-HhhhHHHHHHHHHHHhccchhhcCchhhHHHH
Confidence 00 0 000 112224567999999999999998877642 2222 4 899999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCccHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHc-c-CCCCHHHHHHHHHHHH
Q 000331 284 RHQICSLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVKVT-F-LDLPLWHRILVLEILR 361 (1652)
Q Consensus 284 r~~lc~lLi~~lssn~~~~~~~~~~~F~~~~lRi~~~Li~~~~~~L~~E~EvfLs~Li~~l-~-~~~~~w~r~L~LEvl~ 361 (1652)
|+++|-.|.| |+.++. .+.| ++.+-||+.|+.+|+.++|.|+|+|++.++..+ + ...+.-||..+|.++.
T Consensus 325 kqyKOGalsk----n~vS~~---~~vf-e~s~~If~~lls~~r~~~K~ei~vff~~i~~~ile~~t~s~~qk~~~l~~~~ 396 (1514)
T KOG0929|consen 325 KQYLCLALSK----NSVSNV---PMVF-ELSCTIFVSLLSNFRTHLKAEIEVFFSEIFLRILENNTSSFQQKMMVLRILT 396 (1514)
T ss_pred HHHHHHHHhh----cccccc---hHHH-HHHHHHHHHHHHhcccccccccccchhhhhhhhhhcCCCcccchhHHHHHHh
Confidence 9999955533 222222 5677 589999999999999999999999999887654 3 2346789999999999
Q ss_pred HhhcChHHHHHHHHhcCCCCCCcchHHHHHHHHHHHhhcc--------ccc-----------------------c-----
Q 000331 362 GFCVEARTLRLLFQNFDMNPKNTNVVEGMVKALARVVSSV--------QFQ-----------------------E----- 405 (1652)
Q Consensus 362 ~l~~dp~ll~~iy~nYD~~~~~~nI~~~lv~~L~r~~~~~--------~~~-----------------------~----- 405 (1652)
++|.||+.++++|+||||+.+..|||+++++.+.+.+++. |.+ +
T Consensus 397 ~ic~d~q~~Vdi~vnydcd~~~~nifer~v~~ltk~a~g~~~s~~~~~P~~~~~~~~~s~kcL~s~l~s~s~w~~~~~~~ 476 (1514)
T KOG0929|consen 397 RICADPQTLVDIYVNYDCDSNSQNIFERLVNGLSKIAQGRTGSNLELSPVQELALRLKSLKCLVSILKSMSGWNDNQLNV 476 (1514)
T ss_pred hhcCCCccccccccCCccccCCccHHHHHHhhHHHhhcCCCccccCCCCchhhhHhhhhhhhHHHHHHhhhhhccccccC
Confidence 9999999999999999999999999999999999999751 110 0
Q ss_pred ------------------Cc---------hh---------HHHhhhhcccCccc-cccccccc-----------------
Q 000331 406 ------------------TS---------EE---------SLSAVAGMFSSKAK-GIEWILDN----------------- 431 (1652)
Q Consensus 406 ------------------~s---------~e---------~l~~~~g~f~~k~k-Gi~~ll~~----------------- 431 (1652)
.+ .+ .++.+...||.||+ ||+++...
T Consensus 477 ~~~~t~~~~~~~~~~~~~~s~~~~~~~~~~~q~e~~k~ek~l~~~i~~fN~kpkkgi~~l~s~~~v~~sp~eiaeFL~~t 556 (1514)
T KOG0929|consen 477 EGVITGKKSSTTPIENELNSDTQSNDADDPEQFEALKSEKQLQEGIQLFNGKPKKGISFLDSKGTVGTSPLEIAEFLIGT 556 (1514)
T ss_pred CCcccCccccCcchhhhccCccccccccChhhhhhhhhhcchHHHHHHhccCCccCchhhhhcCCCCCCHHHHHHHHHhc
Confidence 00 00 01235567999987 98865321
Q ss_pred ---------------ccC---------------CCcc-----------cCCchhhHHHHHHHHHHH--------------
Q 000331 432 ---------------DAS---------------NAAV-----------LVASEAHSITLAIEGLLG-------------- 456 (1652)
Q Consensus 432 ---------------d~~---------------~~~~-----------ll~~Ea~~I~~~~e~~a~-------------- 456 (1652)
|+. ++++ .+|||+|+|+|+|++|++
T Consensus 557 ~~l~kt~igdyLGe~d~~~~~VMhayVd~~dF~~~~~~~ALR~fL~~frLPgEaQkIDRiM~kFS~ry~~cNP~~lFssA 636 (1514)
T KOG0929|consen 557 EGLSKTILGDYLGEDDDFNKAVMHAYVDLFDFKNMSLVEALRKFLEGFRLPGEAQKIDRLMEKFSERYCKCNPGTLFSSA 636 (1514)
T ss_pred cCCCHHHHHHHhcCCcchhHHHHHHHHHhhCcCCCcHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHhcCCCccCCCc
Confidence 111 2221 189999999999999996
Q ss_pred -----HHHHHHhcccc--------------------cccCCC-CCCCC----CCC-------------------------
Q 000331 457 -----VVFTVATLTDE--------------------AVDVGE-LESPR----CDY------------------------- 481 (1652)
Q Consensus 457 -----~i~sv~~L~~~--------------------~~~~g~-~~~p~----~e~------------------------- 481 (1652)
++||++||||| |+|+|. ++... ||+
T Consensus 637 DtaYVLAfSlIMLnTDlHnp~vKnKMTK~dFI~nnrgind~~dlp~e~L~~lYd~I~~~Eikm~~~~~~~~~~~~s~~~~ 716 (1514)
T KOG0929|consen 637 DTAYVLAFSLIMLNTDLHNPNVKNKMTKADFIRNNRGINDGKDLPEEYLEALYDEIEYKEIKMKSDSLLPISSESSNLPK 716 (1514)
T ss_pred cchHHHHHHHHHHhccccCchhhccccHHHHHHhcccccCcccChHHHHHHHHHHhhhccccccccccccccCCCCcchh
Confidence 46899999887 345554 21000 000
Q ss_pred ------CCC-------------------CCcC---------CchhHHHHHHHHHhhHHHHHHHHHhHhhccCHHHHHHHH
Q 000331 482 ------DPL-------------------PKCM---------GETAVLCISMVDSLWLTILDALSLILSRSQGEAIILEIL 527 (1652)
Q Consensus 482 ------~~~-------------------~~~~---------~~~~~~~~~m~~~~W~~iLaalS~~l~~s~De~~~~~lL 527 (1652)
... ++.. -.++.++++||+.+|.|.+||++..|..++|......|+
T Consensus 717 ~~~~~~~~~l~~~~r~~~~~~s~~~~~~~e~~s~~~s~~~~ath~~~Vr~m~e~~W~p~laafs~~~~~sdd~~~~n~cl 796 (1514)
T KOG0929|consen 717 LLGLTGILNLRSNSRMSAIDMSASQSQLKEKGSLSESVFYSATHLISVRPMFESLWTPMLAAFSVGLQDSDDLEIANLCL 796 (1514)
T ss_pred hhccccccccchhhhhhHHHhhhhHHHHHHhcccccccceecccceeeeccccccccchhhhhchhhhcCCccccccccc
Confidence 000 0000 014557799999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCCCCCcccccccccCCCCCCccccccccCCCCCCHHHHHHHHHHHHHHH
Q 000331 528 KGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNESDRRSAVLQSPGSKRSESLVDQKDNIVLTPKNVQALRTLFNIAH 607 (1652)
Q Consensus 528 ~gfq~~a~iag~l~L~~~rDafl~sL~k~t~~~~~~~~~~~~~~~sp~s~~~~~~~~~~~~~~l~~Kni~~lraLl~la~ 607 (1652)
+||+...|+++.++++..||||+++|.+||.++.. ..+..||+.++|+++.||+
T Consensus 797 ~g~r~ai~ia~~f~~~~~rdAfv~al~~ft~l~~~--------------------------~e~k~kNi~aik~l~~ia~ 850 (1514)
T KOG0929|consen 797 DGFRLAISIASIFSMELGRDAFVQALARFTNLHAP--------------------------SEMKQKNIDAIKALLEIAD 850 (1514)
T ss_pred cchhheeeehhhhcCCccccHHHHHHHHHHhccCH--------------------------HHHhHhhHHHHHHHHHHhh
Confidence 99999999999999999999999999999987511 1178999999999999999
Q ss_pred hhcccccCCHHHHHHHHHHHHHHhcCCCCCCccc---------cccccc--c---c---c-cccCccchhhHHHHHHHHH
Q 000331 608 RLHNVLGPSWVLVLETLAALDRAIHSPHATTQEV---------STASSK--L---A---R-ESSGQYSDFNVLSSLNSQL 669 (1652)
Q Consensus 608 ~lG~~L~~SW~~IL~tlq~l~~~~~~p~~~~~~~---------~~~~p~--~---~---~-~~~~~~~d~~il~si~~~L 669 (1652)
..||+|+.+|+.|+.|+.+++++...+....... ....|+ . + + +..+.......+-++ +++
T Consensus 851 t~gn~l~~sW~~Il~cisqlE~~qli~sg~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~e~~~~~~s~s~vi~~-d~I 929 (1514)
T KOG0929|consen 851 TDGNKLFDSWLDILKCISQLEHTQLIGSGSPPNKLPFVVSQREDYKKPGGSYDSSGDGSRIENVGEKSSVSVVIQM-DRI 929 (1514)
T ss_pred cccchhHhHHHHHHHHHHHHHHHHHhcCCCCcccCcchhhhchhccCCcccccccccccchhccccchhHHHHHHh-hhh
Confidence 9999999999999999999999965433321110 001110 0 0 0 000111233444555 899
Q ss_pred HhhccCCChHHHHHHHHHHHHhhHHhhcCCCCCCCCCCCCCCCCcchhHHHHHHHHHHhhcc----chhhHHHHHHHHHH
Q 000331 670 FESSALMHISAVKSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSISFSVERMISILVNNLHR----VEPLWDQVVGHFLE 745 (1652)
Q Consensus 670 FesS~~L~~~sl~~fv~ALc~lS~e~l~~~~~~~~~~~~~~~~~~~F~L~kL~ev~~~N~~R----~~~iW~~l~~hli~ 745 (1652)
|++|..++.+++++|++|||++|.+++..+. .|++|+++|++||+++||.| |..+|..+.+||..
T Consensus 930 ft~S~~l~~eaIv~FvkaLc~vs~~eL~s~~-----------~PrlfslqK~VeIs~ynM~rIrl~ws~iw~vlg~~F~~ 998 (1514)
T KOG0929|consen 930 FTSSQRLDSEAIVDFVKALCKVSMDELLSPS-----------TPRLFSLQKLVEISYYNMNRIRLVWSRIWAVLGEFFVS 998 (1514)
T ss_pred hcccccCCchHHHHHHHHHHHHHHHHhcCCC-----------CCCeeecccceeeeccccccchhhHHHHHHHhhhhhhc
Confidence 9999999999999999999999999987642 47899999999999999998 78999999999999
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhccchhhHHHHHHhccHHHHhccCCcHHHHHHHHH
Q 000331 746 LADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAGTLK 825 (1652)
Q Consensus 746 v~~~~~~~lr~~Avd~L~~Li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~dIr~~iL~ 825 (1652)
+++++|..+..+|+|+|+|+.++|++.+ +..++.||+.+++||...+..+..++||++|++
T Consensus 999 vg~~~n~~vaifa~DslRQlsmkfle~~-------------------el~~f~Fq~~fl~Pfe~im~~s~s~~Irelv~r 1059 (1514)
T KOG0929|consen 999 VGCNSNESVAIFALDSLRQLSMKFLERS-------------------ELDNFRFQKDFLRPFEHIMKRSSSAEIRELVVR 1059 (1514)
T ss_pred cccCCCCceEEEehhhhHHhhhhhcchh-------------------hhhhhhHHHhhcCcchHHhhccCcchhHHHHHh
Confidence 9999999999999999999999998764 235688999999999999999999999999999
Q ss_pred HHHHHHHhcCCcccCChHHHHHHHhhhhcccchhHHHHHHHHHHHHHhccCCCC-Ch--hhHHHHHHHHHHHHccCCCcc
Q 000331 826 ILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSI-PT--DCIHECVDVTGAYSSQKTELN 902 (1652)
Q Consensus 826 ~L~~iL~~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~L~lI~~dfl~~L-p~--~~~~~lV~~L~~F~~q~~dlN 902 (1652)
|+. +++++||+.||.|++.++.+..+.+|..+|+.+..|+.+++... |. ++|.+|+.|+.+|+.+....|
T Consensus 1060 C~~-------~nikSGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~cl~~F~~~~~~~~ 1132 (1514)
T KOG0929|consen 1060 CIS-------SNIKSGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEMDSFKDCVKCLEEFTKNLGFPD 1132 (1514)
T ss_pred hhh-------hhhhhhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHHHHHHHHHhcCCCc
Confidence 998 78999999999999999999999999999999999999999765 43 799999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHcccCCCchhhhhhhhcccCCCccccCcchhhhhhhccccccCCCCCcchhhhhHHHHHHHHHH
Q 000331 903 ISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLLFAVFSLLKK 982 (1652)
Q Consensus 903 ISLtAi~llW~isD~L~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~LW~~LL~~L~~ 982 (1652)
+++.||.++|.++.++..+ . + . ++.. ++. .+ ....|...|+|++.++..
T Consensus 1133 ~s~~aI~~lr~ca~k~~e~-~-~-~-~~~~------------~~~--------------~~-~~~~~~~~wfP~l~~ls~ 1181 (1514)
T KOG0929|consen 1133 DSLNAIRFLRLCALKLAEG-V-Y-N-EKLK------------VGK--------------DS-EFDVWNSGWFPMLFQLSK 1181 (1514)
T ss_pred cchHHHHHHHHHHHHhccc-c-c-h-hhcc------------ccc--------------cc-ccccceeeeehhHhhhhH
Confidence 9999999999999999865 1 1 0 0000 000 00 123478899999999999
Q ss_pred hccCCcHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHhHHHhhhhhhccCCcccccccccCcCCCccchhhcccc
Q 000331 983 LGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHS 1062 (1652)
Q Consensus 983 L~~D~R~EVRn~AIqTLfril~s~g~~ls~~~W~~~~~~VLFPLL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ihhs 1062 (1652)
++.|.|++||+.|++.+|.|+..||+.|..++|+.+|. ++||+|+.++.....
T Consensus 1182 i~~~~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~-~~fpIF~~~~~~~~~-------------------------- 1234 (1514)
T KOG0929|consen 1182 IINDYRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFR-ILFPIFDNVKLDEDE-------------------------- 1234 (1514)
T ss_pred HhhccHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHH-heeecccccCcccch--------------------------
Confidence 99999999999999999999999999999999999999 999999999643111
Q ss_pred cchhhhhHH-HHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCCCC
Q 000331 1063 RNTAQKQWD-ETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKGNL 1141 (1652)
Q Consensus 1063 r~t~~k~W~-ET~vlal~gl~klf~~~~~~L~~l~~F~~~W~~lL~~l~~~~~~~~~els~a~~~~L~~lL~~~~~~~~~ 1141 (1652)
++..+|. +|+++|++.++.||.+||+.+.. +-..++..+..|+++++..++.++.+||.+++..++.++.
T Consensus 1235 --~~~~eW~~tT~~~Al~~~v~lf~~~~~~l~~------lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~fs- 1305 (1514)
T KOG0929|consen 1235 --SEKDEWLSTTCNHALQALVDLFTQFFKQLNN------LLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEKFS- 1305 (1514)
T ss_pred --hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhcccccC-
Confidence 1224597 99999999999999999998752 4667889999999999999999999999999999887775
Q ss_pred ChhHHHHHHHHHHHhhcC
Q 000331 1142 PVAYLNSVLDVYEYALQK 1159 (1652)
Q Consensus 1142 ~~~~~~~~~~~w~~~~~~ 1159 (1652)
++.|+.+.+....++..
T Consensus 1306 -e~~Wde~~~~~~e~~~~ 1322 (1514)
T KOG0929|consen 1306 -EEDWDEICNCILEAFKT 1322 (1514)
T ss_pred -HhhHHHHHHHHHHHHHh
Confidence 78888888877666554
No 4
>KOG0928 consensus Pattern-formation protein/guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-75 Score=734.37 Aligned_cols=1014 Identities=19% Similarity=0.251 Sum_probs=712.2
Q ss_pred hHHHHHHHHHHHHhCCCCC-C--cccCchhHHHHHHHHhcCC--CchhHHHHHHHHHHHHhcCCCCcc------hHHHHH
Q 000331 24 AVKDGAEHAILKLRSLSSP-S--ELAQSEDILRIFLMACEVR--TVKLSVIGLSCIQKLISHDAVAPS------ALKEIF 92 (1652)
Q Consensus 24 ~lk~A~e~sl~~Lk~~~~~-~--~l~~~~~~l~PfllaC~sk--n~kl~~iaL~~lqkLi~~~~i~~~------~l~~Il 92 (1652)
+.++.--.++..||..-+. . +..++..||+||+..++|. +|+||++||++++|++++++|+++ ++..++
T Consensus 40 ~~~~~ll~~f~~Lr~~ln~~~~l~~idp~~~L~PFL~vI~s~~~~g~iTslALssv~Kflt~~iid~~s~n~~~am~~~v 119 (1386)
T KOG0928|consen 40 TSSHSLLSSFKQLREVLNSLASLDTIDPLTYLSPFLEVIKSDETTGPITSLALSSVLKFLTLNIIDESSPNAADAMRNIV 119 (1386)
T ss_pred ccchHHHHHHHHHHHHhhchhhhccCChHhHHhHHHHHHhcccCCccHHHHHHHHHHHHheeeecCccCccHHHHHHHHH
Confidence 3455555666666654332 1 2367889999999999988 799999999999999999999975 689999
Q ss_pred HHHHcc----cC-CCCchHHHHHHHHHHHHHcCCCC-CCChHHHHHHHHHHhhhccccCChHHHHHHHHHHHHHHHHHHH
Q 000331 93 SMLKNH----AD-MVDESVQLKTLQTILIIFQSRLH-PENEDNMAQALGICLRLLENNRSSDSVRNTAAATFRQAVALIF 166 (1652)
Q Consensus 93 ~~l~~~----~~-~~~e~VqLkILQ~L~~l~~s~~~-~~~g~~L~~~l~~C~~L~~~sk~~~~v~~TA~ATL~Qlv~~VF 166 (1652)
+|+++| ++ .+||.|.|||||+|.+++.++.+ .+.++.++..+++||++.+.++-+++.+++|++||..|+..||
T Consensus 120 ~AvthcRFe~td~~Sde~VllkilqvLr~lm~sp~~~lLSnq~Ic~ivqTcl~v~~q~~lselLr~~Ae~Tm~~~~~~IF 199 (1386)
T KOG0928|consen 120 DAVTHCRFEGTDPASDEVVLLKILQVLRSLMDSPAGALLSNQIICDIVQTCLRVVCQSRLSELLRKSAEHTMHDLTQLIF 199 (1386)
T ss_pred HHHHheeeeccCccchhHHHHHHHHHHHHHHhCchhhhcchhHHHHHHHHHHHHHHHHhHHHHhhcchhhhHHHHHHHHH
Confidence 999999 43 47999999999999999999864 4589999999999999988555556999999999999999999
Q ss_pred HhhhhcccCCC-C-------CCC---CCCCccccccccccccc--ccCCC--C--cccccccCCC-----Cc--------
Q 000331 167 DHVVRAESLPM-G-------KFG---SGAHITRTNSVTGDVSR--SINHS--E--SLEHEFASEG-----PS-------- 216 (1652)
Q Consensus 167 ~rv~~ed~~~~-~-------~~~---~~~~~~~~~~~~~~~~~--~~~~~--~--~~~~~~~~~~-----~~-------- 216 (1652)
.|+++.++... + ..+ .+..........++.+. +.... . ....+.+... +.
T Consensus 200 srLk~~~~~~~~~~~~~~es~~~~~~~~~~i~~k~~en~e~~~~~~~a~~~~~~~~~~~~~~v~~~~~~~~~~~e~a~~~ 279 (1386)
T KOG0928|consen 200 SRLKYIEPPYVNEMYINDESYQGNVLKDDFIGTKRVENGEISSEDESATFDDGSISEKFEVPVQQVDREQETDEENAEAM 279 (1386)
T ss_pred HhCccccccccchhhcchHhhhcccccccccCcccCCCCCccCcccccccccccccccccCCccccccccCChhhhhhHh
Confidence 99997652100 0 000 00000000000000000 00000 0 0000000000 00
Q ss_pred --cchhchhhhhhhHHHHHHHHHHhhcCCCCCcccccchhHHhHHHHHHHHHHcCcccccCCHHHHHHHHHHHHHHHHHh
Q 000331 217 --LRRETLTKAGKLGLRLLEDLTALAAGGSASWLHVNTLQRTFVLDILEFILSNHVSLFRMLVSYEQVLRHQICSLLMTS 294 (1652)
Q Consensus 217 --~~~~~~~~~~~da~~vf~dLc~L~~~~~p~~l~~~~l~k~~~LELlesvL~n~~~~F~~~p~l~~llr~~lc~lLi~~ 294 (1652)
-...+..|+.+| .|.-||.+++..++ ...++.-+.++|.||++.++-+|+.|+.||.|..++++.+...++.+
T Consensus 280 ~~~~~~ygip~~~~---~~h~l~sl~~~~n~--~~~~es~~~~~l~lin~aie~~g~~i~~~prll~liqd~~fk~l~~~ 354 (1386)
T KOG0928|consen 280 AAMDENYGIPVMKD---IFHFLLSLLNVTNT--VAHDESVRSFALVLINSAIELGGDCIREHPRLLRLIQDPLFKHLIEF 354 (1386)
T ss_pred hcccccCCCceecc---chhhhhhhcccccc--ccchhhhhHHHHHHHHhhHhhcchHHHHhhHHHHHhccHHHHHHHHH
Confidence 001122233333 45568888887665 34456789999999999999999999999999999999999888887
Q ss_pred hccccCCCCCCCCccHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHHHhhcChHHHH
Q 000331 295 LRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVKVT---FLDLPLWHRILVLEILRGFCVEARTLR 371 (1652)
Q Consensus 295 lssn~~~~~~~~~~~F~~~~lRi~~~Li~~~~~~L~~E~EvfLs~Li~~l---~~~~~~w~r~L~LEvl~~l~~dp~ll~ 371 (1652)
+...+..+ -.+.+.++...++..+...++.+++.+.|.|++.+..+. +...|+.||+++||.+-.+|+.|.|+.
T Consensus 355 ~~~~~k~s---~~~~~Lql~~s~vl~l~~~lr~~~k~qle~~Fs~l~~~~~~~~~~~~~~~~e~ale~lv~~~R~p~F~~ 431 (1386)
T KOG0928|consen 355 LQIPTKMS---LERLVLQLFCSLVLNLYLALREQLKLQLEAFFSILLLRGTAEEYGPPYEQQEVALEALVLLCRIPSFLT 431 (1386)
T ss_pred Hhhcccch---hhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHH
Confidence 73221100 123444555556666777788899999999999887765 233478999999999999999999999
Q ss_pred HHHHhcCCCCCCcchHHHHHHHHHHHhhc---------ccc-----------------c--cCc----------------
Q 000331 372 LLFQNFDMNPKNTNVVEGMVKALARVVSS---------VQF-----------------Q--ETS---------------- 407 (1652)
Q Consensus 372 ~iy~nYD~~~~~~nI~~~lv~~L~r~~~~---------~~~-----------------~--~~s---------------- 407 (1652)
++|.|||||.+|.|||+++++.|+|.+.- ++. + +..
T Consensus 432 e~yvNfDCd~~csnlfedl~k~LtknafP~sg~~tt~~i~~l~l~~v~~l~e~~~~~l~~~d~~ef~~~k~e~~v~~iR~ 511 (1386)
T KOG0928|consen 432 EMYVNFDCDLYCSNLFEDLIKLLTKNAFPVSGPLTTASILPLDLEGVLGLAENMIDELQDSDREEFWTDKCEVWVLFIRS 511 (1386)
T ss_pred HHHHhcCCchhhhhhHHHHHHHHHHccCCcccccccccccchHHHHHHHHHHHHHhhccccCcCccccCCcchhhhhhcc
Confidence 99999999999999999999999997631 110 0 000
Q ss_pred ---hhHHHhhhhcccCccc-cccccccc-------cc-------------------------CCCcc-------------
Q 000331 408 ---EESLSAVAGMFSSKAK-GIEWILDN-------DA-------------------------SNAAV------------- 438 (1652)
Q Consensus 408 ---~e~l~~~~g~f~~k~k-Gi~~ll~~-------d~-------------------------~~~~~------------- 438 (1652)
.--+.-|+..||.+|| ||+|+..+ || .|..+
T Consensus 512 rk~K~~li~gae~FNe~pkKGi~fL~ek~li~~~~d~~~~~~ffr~n~rLdKk~iGdfLc~~k~~~vLn~Fi~tFdF~gm 591 (1386)
T KOG0928|consen 512 RKRKRELILGAELFNEDPKKGIEFLQEKGLIPSDLDPTSVAEFFRYNPRLDKKTIGDFLCDPKNVSVLNEFIGTFDFQGM 591 (1386)
T ss_pred chhhHHHHHHHHHhccChhhHHHHHHhcCccCCCCChHHHHHHHHhCccccHHHHHHHhcCcchHHHHHHHHHhcCcCCC
Confidence 0012347889999997 99886421 11 11111
Q ss_pred -------------cCCchhhHHHHHHHHHHH-------------------HHHHHHhccccc------------------
Q 000331 439 -------------LVASEAHSITLAIEGLLG-------------------VVFTVATLTDEA------------------ 468 (1652)
Q Consensus 439 -------------ll~~Ea~~I~~~~e~~a~-------------------~i~sv~~L~~~~------------------ 468 (1652)
.+|||+|+|.|++|.|++ ++|+|||||+|+
T Consensus 592 rlDeALRl~L~sFRLPGESQ~IeRVlEAFSery~~~n~~~~~~~kDavFvLsYSIIMLNTDqHNpqVK~~MT~dDf~rNl 671 (1386)
T KOG0928|consen 592 RLDEALRLFLESFRLPGESQKIERVLEAFSERYYSDNSPDIFADKDAVFVLSYSIIMLNTDQHNPQVKRKMTFDDFIRNL 671 (1386)
T ss_pred cHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhcCCCccccccchhhhhhhhhheecccccChhhhccCCHHHHhhhc
Confidence 289999999999999986 357999999984
Q ss_pred --ccCCCCCCCC-----------------CCCCCCCCcC----------C----------chhHHHHHHHHHhhHHHHHH
Q 000331 469 --VDVGELESPR-----------------CDYDPLPKCM----------G----------ETAVLCISMVDSLWLTILDA 509 (1652)
Q Consensus 469 --~~~g~~~~p~-----------------~e~~~~~~~~----------~----------~~~~~~~~m~~~~W~~iLaa 509 (1652)
+|+|+..++. .++.+.++.. + ....++++||..+|+|++||
T Consensus 672 rg~n~g~DFpreyLseiY~SIk~~EIvmPee~hG~~~~~~~~W~~L~~~sktt~~~~~~~~~~~~drdlF~~v~gp~iaa 751 (1386)
T KOG0928|consen 672 RGINGGKDFPREYLSEIYQSIKTNEIVMPEEHHGTEEMFEYRWINLISRSKTTEPFILRDFTLVYDRDLFAMVWGPIIAA 751 (1386)
T ss_pred ccccCCCCCCHHHHHHHHHHHhhcceecccccCCchhhhHHHHHHHHhcccccCceeeccchhhhhHHHHHHHccchHHH
Confidence 4445322111 0111111110 0 12357899999999999999
Q ss_pred HHHhHhhccCHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCCCCCcccccccccCCCCCCccccccccCCC
Q 000331 510 LSLILSRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNESDRRSAVLQSPGSKRSESLVDQKDNI 589 (1652)
Q Consensus 510 lS~~l~~s~De~~~~~lL~gfq~~a~iag~l~L~~~rDafl~sL~k~t~~~~~~~~~~~~~~~sp~s~~~~~~~~~~~~~ 589 (1652)
++++|+.+.+++++++|+.||++||.|++.+|+.++.|..+.+|||||.+.+... ...+.+ ..+
T Consensus 752 ls~vFd~a~~d~I~~r~i~g~~k~a~isA~y~l~dv~ddli~slCkfTtL~~~s~------------~~eel~----~~f 815 (1386)
T KOG0928|consen 752 LSYVFDVAESDTILQRCIDGIRKCAKISAYYGLKDVFDDLIISLCKFTTLLNPSS------------TPEELV----LAF 815 (1386)
T ss_pred HHHHhchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccccCCcc------------CchHHH----HHh
Confidence 9999999999999999999999999999999999999999999999999742211 000100 113
Q ss_pred CCCHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHhcCCCCCC------cc--ccccccc------ccc--ccc
Q 000331 590 VLTPKNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHSPHATT------QE--VSTASSK------LAR--ESS 653 (1652)
Q Consensus 590 ~l~~Kni~~lraLl~la~~lG~~L~~SW~~IL~tlq~l~~~~~~p~~~~------~~--~~~~~p~------~~~--~~~ 653 (1652)
+=+.|...+++|+|-+++..|+.++.+|..|++++.++.+....|.... .. ..++.|. ..+ .++
T Consensus 816 ged~ka~~At~tvf~~~n~~Gd~i~~gw~nI~~~~l~l~r~~llp~~~~e~~~~~~~~~~~~~~~~~~~~~~~~k~~~ss 895 (1386)
T KOG0928|consen 816 GEDTKARMATLTVFFGANKFGDLIRVGWRNIVECLLQLNRLVLLPLRLIEDLKNEPELLKLNKLPVPQQEISINKPRKSS 895 (1386)
T ss_pred cccchhHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhhccCcHhhhhhhhcCccccccCCCCCCccccCcccccccc
Confidence 3478999999999999999999999999999999999998877765421 00 0011110 111 111
Q ss_pred C-------------------cc-chh-------hHHHHH-HHHHHhhccCCChHHHHHHHHHHHHhhHHhhcCCCCCCCC
Q 000331 654 G-------------------QY-SDF-------NVLSSL-NSQLFESSALMHISAVKSLLSALHQLSHQCMIGTSSSFGP 705 (1652)
Q Consensus 654 ~-------------------~~-~d~-------~il~si-~~~LFesS~~L~~~sl~~fv~ALc~lS~e~l~~~~~~~~~ 705 (1652)
+ +. .++ ..+++. .+++|++++.+..+++.+++++|...+...
T Consensus 896 ~Lls~fs~~Ls~d~e~~~~~Ptee~l~~~~~a~~cIk~c~i~~if~~s~~l~~~~l~~Ll~Sli~~s~~~---------- 965 (1386)
T KOG0928|consen 896 GLLSRFSSYLSGDEEEERPCPTEEELSASKKALECIKECHIDQIFTKSKFLQAKSLLTLLKSLIAASNDL---------- 965 (1386)
T ss_pred hHHHHHHHhcCCcccccCCCCcHHHHhhhHHHhhHHHhcCHHHHhhhcccccHHHHHHHHHHHHHhcCCc----------
Confidence 1 00 111 222221 267999999999999999999999887653
Q ss_pred CCCCCCCCcchhHHHHHHHHHHhhccchhhHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHHHHHhcccccccccccc
Q 000331 706 TSSQKIGSISFSVERMISILVNNLHRVEPLWDQVVGHFLELADNS---NQHLRNIALDALDQSICAVLGSEKFQDSASRQ 782 (1652)
Q Consensus 706 ~~~~~~~~~~F~L~kL~ev~~~N~~R~~~iW~~l~~hli~v~~~~---~~~lr~~Avd~L~~Li~~~l~~~~f~~~~~~~ 782 (1652)
+...+.++.|+++.|+.|.+.|.+|+..+|..+.+|+..++..+ ...+.+.|+-.+.+++.+.+..+.+-
T Consensus 966 -s~~de~s~~F~lElli~I~l~nrdri~l~w~~~~e~ll~~~~~~~~~~~~lvek~v~gl~rv~~rll~yk~~l------ 1038 (1386)
T KOG0928|consen 966 -SMEDEESAVFCLELLIAITLSNRDRILLSWFAVYEHLLGLLIQTLMGSPLLVEKAVSGLLRVVNRLLPYKEFL------ 1038 (1386)
T ss_pred -cCcccchHHHHHHHHHHHHhccccceEeeehhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHhhhhhhh------
Confidence 12235567999999999999999999999999999999877654 57788999999999988877543221
Q ss_pred CCCChhhhhccchhhHHHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCccc--CChHHHHHHHhhhhcccchhH
Q 000331 783 RGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLH--YSWPSILELLRSVADASEKDL 860 (1652)
Q Consensus 783 ~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~dIr~~iL~~L~~iL~~~g~~L~--sgW~~If~IL~~v~~~~~~~l 860 (1652)
.+....+++.++.- .....-..-+++-..+.+++..+..+.+ .||.++|..|..++. ++..
T Consensus 1039 ---------~d~l~~sl~~ll~L------~~ki~d~~~~ki~i~~~~lv~~n~~~v~~~~~w~~~~slL~~~~~--h~~a 1101 (1386)
T KOG0928|consen 1039 ---------SDELLDSLRILLKL------DPKILDAFLDKIAIFVSKLVKANAANVHSKDGWALLFSLLELTAR--HPEA 1101 (1386)
T ss_pred ---------hHHHhhhHHHHHhh------cHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHhc--CCch
Confidence 01122344422111 1111225567777788889888877774 699999999999887 3333
Q ss_pred HHHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHccCCCcchhHHHHHHHHHHH--HHHHcccCC---Cchhhhhhhhc
Q 000331 861 ITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAYSSQKTELNISLTAVGLLWTTT--DFIAKGLVH---GISEEKEAANQ 935 (1652)
Q Consensus 861 v~~aF~~L~lI~~dfl~~Lp~~~~~~lV~~L~~F~~q~~dlNISLtAi~llW~is--D~L~~~~~~---~~~~~k~~~~~ 935 (1652)
-..+|..+-..+.|-.+ ++++.|..||+|...|+.... -...|.++ |-....-.. +....|....
T Consensus 1102 ~~~~~~~~l~~m~e~~h-l~~~~fe~~v~~~~~fve~~~--------~~~~~~l~~lde~s~sg~~~~kw~~~~~~~~~- 1171 (1386)
T KOG0928|consen 1102 DFLKFYRLLSKMSEASH-LTPDNFELYVDCGSTFVEARV--------GQIMRSLSLLDEMSSSGEVLDKWEIEAKNATE- 1171 (1386)
T ss_pred hHHHHHHHHHHhhcccc-CChHHHHHHHHHHHHHHHHHH--------HHHHHhcchhhhhcccccchhHHHHHHhhhhc-
Confidence 34455555555556655 456679999999999986631 11111111 111100000 0000000000
Q ss_pred ccCCCccccCcchhhhhhhccccccCCCCCcchhhhhHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHhccCCCCHHHH
Q 000331 936 DLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMW 1015 (1652)
Q Consensus 936 ~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~LW~~LL~~L~~L~~D~R~EVRn~AIqTLfril~s~g~~ls~~~W 1015 (1652)
++. ...........+|+++++.+.++|.|.|.+|||.|++.|+|++.+-++.|.+..|
T Consensus 1172 ---------~~~-------------~~~~~~~~~~~~wl~l~~~~~kl~L~~r~~vRn~aL~~lqr~~~~~~q~l~~~~~ 1229 (1386)
T KOG0928|consen 1172 ---------SGD-------------ESKKSNNYRSEIWLILLQIIRKLCLLSRRGVRNAALTKLQRIIGALDQGLAHSYW 1229 (1386)
T ss_pred ---------ccc-------------cccccchhhHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHhhhcccchHHH
Confidence 000 0000112233599999999999999999999999999999987788899999999
Q ss_pred HHHHHHhHHhHHHhhhhhhccCCcccccccccCcCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 000331 1016 EDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANL 1095 (1652)
Q Consensus 1016 ~~~~~~VLFPLL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ihhsr~t~~k~W~ET~vlal~gl~klf~~~~~~L~~l 1095 (1652)
..||..|+||+++.+.......+.. . ..+.+|++++.+.++++|.+|+..+.+.
T Consensus 1230 ~~Cf~~vlfpll~~l~~~l~~~~~~----------------------~----~~me~t~~~~~~Ll~k~~L~~lq~ls~~ 1283 (1386)
T KOG0928|consen 1230 NPCFDLVLFPLLTDLLELLSDASEK----------------------G----NEMEVTLLLATKLLSKVFLQELQDLSSL 1283 (1386)
T ss_pred HHHHHHHhHHHHHHHHHHhcccccc----------------------c----chHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 9999999999999998654322110 0 1477999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHcCCh-----hHHHHHHHHHHHHHHHhhcCCCCCC-------hhHHHHHHHHH
Q 000331 1096 SNFWTGWESLLHFVKNSILNGS-----KEVSLAAINCLQTTVLSHSTKGNLP-------VAYLNSVLDVY 1153 (1652)
Q Consensus 1096 ~~F~~~W~~lL~~l~~~~~~~~-----~els~a~~~~L~~lL~~~~~~~~~~-------~~~~~~~~~~w 1153 (1652)
+.|..+|..+|+++++++..+. .-+.+++.+.+++++.+|...+-+. ...|+..|.--
T Consensus 1284 ~~f~~Lwl~~ld~m~~l~~~~~~e~~~~~l~e~~pe~l~~~~~~m~~~ei~~~~~~~~~~~~w~~tw~~~ 1353 (1386)
T KOG0928|consen 1284 SMFSTLWLGVLDRMEKLMRGKTSEETSDKLNEIVPELLKNMLLVMKLQEIILDKDEIGKDSLWEITWERL 1353 (1386)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccchhhhHHhhhhhhhhhhhhhhhccccccCcccccccchHHHHHHHH
Confidence 9999999999999999997544 5689999999999999998765432 23666555433
No 5
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=99.96 E-value=9.1e-29 Score=268.45 Aligned_cols=156 Identities=32% Similarity=0.507 Sum_probs=141.5
Q ss_pred hhhhhHHHHHHHHHHhh-----cCCCCCcccccchhHHhHHHHHHHHHHcCccccc---CCHHHHHHHHHHHHHHHHHhh
Q 000331 224 KAGKLGLRLLEDLTALA-----AGGSASWLHVNTLQRTFVLDILEFILSNHVSLFR---MLVSYEQVLRHQICSLLMTSL 295 (1652)
Q Consensus 224 ~~~~da~~vf~dLc~L~-----~~~~p~~l~~~~l~k~~~LELlesvL~n~~~~F~---~~p~l~~llr~~lc~lLi~~l 295 (1652)
.+.+||++||++||+|+ .+++|.|++.+..+|.+|||||+++|+++|+.|. +||+|.+++|+++|+.|++++
T Consensus 3 ~~~~Da~~vf~~Lc~L~~~~~~~~~~~~~~~~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~ 82 (168)
T PF12783_consen 3 YYVKDAFLVFRDLCSLSSKPSDPGNSPDFLSHDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNL 82 (168)
T ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999 6667888888888999999999999999999999 666999999999999999988
Q ss_pred ccccCCCCCCCCccHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH-HccCCC-CHHHHHHHHHHHHHhhcChHHHHHH
Q 000331 296 RTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVK-VTFLDL-PLWHRILVLEILRGFCVEARTLRLL 373 (1652)
Q Consensus 296 ssn~~~~~~~~~~~F~~~~lRi~~~Li~~~~~~L~~E~EvfLs~Li~-~l~~~~-~~w~r~L~LEvl~~l~~dp~ll~~i 373 (1652)
.++ +.+.| .+++|++++++.+|+++||.|+|+|++.+++ +++++. |.|||+++||+++++|++|++++++
T Consensus 83 ~~~-------~~~i~-~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l~~l 154 (168)
T PF12783_consen 83 SSS-------DFPIF-SRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKDPQFLVDL 154 (168)
T ss_pred hhh-------hhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHHHHH
Confidence 752 23445 4799999999999999999999999999888 667665 6899999999999999999999999
Q ss_pred HHhcCCCCCCcchH
Q 000331 374 FQNFDMNPKNTNVV 387 (1652)
Q Consensus 374 y~nYD~~~~~~nI~ 387 (1652)
|+||||+.+++|||
T Consensus 155 f~NYDCd~~~~nif 168 (168)
T PF12783_consen 155 FVNYDCDLNSKNIF 168 (168)
T ss_pred HHHcCCCCCCCCCC
Confidence 99999999999996
No 6
>COG5307 SEC7 domain proteins [General function prediction only]
Probab=99.82 E-value=2.9e-19 Score=232.49 Aligned_cols=732 Identities=17% Similarity=0.162 Sum_probs=483.1
Q ss_pred hHHhHHHHHHHHHHcCcccccCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCccHHHHHHHHHHHHHHHHHhhhHhHH
Q 000331 254 QRTFVLDILEFILSNHVSLFRMLVSYEQVLRHQICSLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITEC 333 (1652)
Q Consensus 254 ~k~~~LELlesvL~n~~~~F~~~p~l~~llr~~lc~lLi~~lssn~~~~~~~~~~~F~~~~lRi~~~Li~~~~~~L~~E~ 333 (1652)
++..+|+++.++|..+. .|..+++++.|-.+.+...+ . -.|+|. ..+.+++..+..+....+.|.
T Consensus 27 ~~l~~l~~~~~~l~~~~-------~l~~~~~~~~~l~~~~~a~s----~---~~~v~~-v~~~i~~~~~~~~~~~f~~~~ 91 (1024)
T COG5307 27 SKLYSLPVSYSILRDFK-------LLLDLLFPYLRLKLSLSARS----P---LLPVFE-VGLEIIGLRLSNLPKLFKLES 91 (1024)
T ss_pred cccccccchHHHhccch-------HHHHHhcchhhhhhhhcccc----c---chhhhh-hhHHHHHHHHhhhhhhhhhcc
Confidence 77888888888887665 88899999999444332221 1 246664 578899999999999999999
Q ss_pred HHHHHHHHHHc-cCC-CCHHHHHHHHHHHHHhhcChHHHHHHHHhcCCCCC-CcchHHHHHHHHHHHhhcccc-------
Q 000331 334 EVFLSMLVKVT-FLD-LPLWHRILVLEILRGFCVEARTLRLLFQNFDMNPK-NTNVVEGMVKALARVVSSVQF------- 403 (1652)
Q Consensus 334 EvfLs~Li~~l-~~~-~~~w~r~L~LEvl~~l~~dp~ll~~iy~nYD~~~~-~~nI~~~lv~~L~r~~~~~~~------- 403 (1652)
++|+...+..+ +.. ...-|+..-|-..+++|..|+ ++.|++|||... ..|+.++....+.+.+.+.|.
T Consensus 92 ~~~f~s~~f~i~~~~~~s~~q~~~~l~~~~~~~~~~r--l~~~i~~d~~~~~~~~~~~~~~~~~s~~~t~~p~~~~~~~~ 169 (1024)
T COG5307 92 SVFFISIYFPISHTTSTSLQQKSSELSTSQVVILLSR--LERYINYDVGRGFMENITERTAFPLSRPSTNDPPETRSLII 169 (1024)
T ss_pred chHHHHHhhhhhcccccchhhhhHHhHhhhhhhcccc--hhhhcccccccccchhhhhccCCccccccccCCCcchhhhh
Confidence 99998766654 443 345788899999999999999 899999999977 778877777776655532110
Q ss_pred ---------------------c------------------------------c---Cchh--------------------
Q 000331 404 ---------------------Q------------------------------E---TSEE-------------------- 409 (1652)
Q Consensus 404 ---------------------~------------------------------~---~s~e-------------------- 409 (1652)
+ + .+.|
T Consensus 170 e~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~is~l~~l~~~sl~~s~~~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~d~ 249 (1024)
T COG5307 170 EQLSILWISSPYFFLTLISDFQCDLDSSDCSISFLKGLTKNSLVPSAYYTNKDVPPLSGEGLVSGSKSMVNSMKNSSRDS 249 (1024)
T ss_pred hhhhhcCCCCCccccccccchhhhhHHHHHHHHHHHHHhhcccchhhhhcccCCCCcccchhhhcCCcccccccccccCh
Confidence 0 0 0000
Q ss_pred --------H------------HHhhhhcccCccc-cccccccc---------------------------------c---
Q 000331 410 --------S------------LSAVAGMFSSKAK-GIEWILDN---------------------------------D--- 432 (1652)
Q Consensus 410 --------~------------l~~~~g~f~~k~k-Gi~~ll~~---------------------------------d--- 432 (1652)
. +..++..||.||+ ||..+.+. |
T Consensus 250 ~s~~~~~~~~~~~~~k~rkt~~~e~~~~fn~kp~~gi~~l~~~~~i~~d~~~sia~~L~~~~~~l~k~~lg~~L~~~~~k 329 (1024)
T COG5307 250 SSFVNSDSSIVNLGIKKRKTELIECIQAFNEKPKKGIASLIDSEFIDSDSHKSIAEILEGTEGRLDKKKLGLYLGTDDDK 329 (1024)
T ss_pred hhhccchHHHhhhccccchHHHHHHHHHhhhcCcccchhhcccccCCcccchHHHHHHHhccCcccHHHHHHHhcCCchh
Confidence 0 0014567787776 87544221 0
Q ss_pred -------------cCCCcc-----------cCCchhhHHHHHHHHHHH-------------------HHHHHHhccccc-
Q 000331 433 -------------ASNAAV-----------LVASEAHSITLAIEGLLG-------------------VVFTVATLTDEA- 468 (1652)
Q Consensus 433 -------------~~~~~~-----------ll~~Ea~~I~~~~e~~a~-------------------~i~sv~~L~~~~- 468 (1652)
..++++ .+|||+|+|+|++|+|+. ++|+++|||||-
T Consensus 330 n~~vL~~Fi~~fdFk~~~i~eALR~lL~sfrLPgEaQqIDRile~FS~~Y~~~Np~~~~~~~D~vyiLafSlimLNTDlH 409 (1024)
T COG5307 330 NNAVLREFISLFDFKGLDIDEALRKLLQSFRLPGEAQQIDRILEAFSDKYYSDNPKKFSSKPDSVYILAFSLIMLNTDLH 409 (1024)
T ss_pred HHHHHHHHHHhcCcCCCcHHHHHHHHHHheecCchHHHHHHHHHHHHHHHHHhCcccccCccceeehhHHHHHHHhcccc
Confidence 012222 189999999999999986 468999999883
Q ss_pred -------------------ccCCCCCCCC-----CCC------------CCCCC-----------------cCCc--hhH
Q 000331 469 -------------------VDVGELESPR-----CDY------------DPLPK-----------------CMGE--TAV 493 (1652)
Q Consensus 469 -------------------~~~g~~~~p~-----~e~------------~~~~~-----------------~~~~--~~~ 493 (1652)
.|.|..-++. +++ ...+. ..++ ...
T Consensus 410 Np~iK~kMT~~df~~N~~g~n~g~~~~~~~L~~~Y~~I~~kei~~~e~~~~~~~~~~~~~~~~~ss~~~~~~~~rd~~~~ 489 (1024)
T COG5307 410 NPNIKAKMTFEDFSKNLRGENTGRDFPEEFLEEFYDNIKKKEIVLPEEHHSSETSPEDNWPSLDSSFTNIAEFGRDNQRV 489 (1024)
T ss_pred ChhhhccccHHHHHhhhcccCCccccCHHHHHHHHHHHhhccccchhhcccccccccccchhhhhhhhhhhhcccccccc
Confidence 2233211000 000 00000 0001 111
Q ss_pred HHHHHHHHhhHHHHHHHHHhHhhccCHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCCCCC-ccccccccc
Q 000331 494 LCISMVDSLWLTILDALSLILSRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNE-SDRRSAVLQ 572 (1652)
Q Consensus 494 ~~~~m~~~~W~~iLaalS~~l~~s~De~~~~~lL~gfq~~a~iag~l~L~~~rDafl~sL~k~t~~~~~~-~~~~~~~~~ 572 (1652)
..+.+|+..|+-+++++...++...++-+....+.+++++..+|..|++..|||+|+.++++++.+.... ++... ..
T Consensus 490 ~~~~~f~~v~~~~et~~~~i~~s~s~~~~~s~~~~si~~~~~ia~~f~~n~p~~~~~~~~s~~t~l~~~S~~~~~~--~~ 567 (1024)
T COG5307 490 ADATHFDHVGPIFETSLFPILMSASDDLYSSDGVVSISKCTRIAANFDFNDPRDAFLESLSEFTTLINSSVSEGPY--LF 567 (1024)
T ss_pred hhHhhhhhcchHHHHHHHHHHhhhcchhcccccchHhhcccchhhcceecchhHHHHHHhhccCCccccCcccccc--cc
Confidence 2347788888888888888888888888888889999999999999999999999999999999875322 11100 00
Q ss_pred CCCCCCccc-ccccc--CCCCCCHHHHHHHHHHHHHHHhhcc--cc-cCCHHHHHHHHHHHHHHhcCCCCCCcccccccc
Q 000331 573 SPGSKRSES-LVDQK--DNIVLTPKNVQALRTLFNIAHRLHN--VL-GPSWVLVLETLAALDRAIHSPHATTQEVSTASS 646 (1652)
Q Consensus 573 sp~s~~~~~-~~~~~--~~~~l~~Kni~~lraLl~la~~lG~--~L-~~SW~~IL~tlq~l~~~~~~p~~~~~~~~~~~p 646 (1652)
.+... .+. ..... ..++-.-+++.+...++.+....|+ .+ ...|..+-..-..+........... ..|
T Consensus 568 ~~~~d-~~~~is~~~~~~~i~~~~~~ql~~v~~~~~~~k~~~~~i~~s~~~~~i~~~~~~~~~~~l~~~~~~-----~~~ 641 (1024)
T COG5307 568 IPSED-SLLSISVLELAARIGRGFEDQLSDVKLFRLRSKSGNKEILSSSLLSNIENKSLKLYLSSLIEDGKH-----FSP 641 (1024)
T ss_pred Ccccc-ccchhhHHHHHHHhcccchhhcchhHHhHHhhccccccccchhhhhhhhhhHhhhhhhhhcCCCcc-----ccc
Confidence 01000 000 00000 1122334899999999999988877 33 4588887666555544332211100 001
Q ss_pred cccccccCccchhhHHHHHHHHHHhhccCCCh-HHHHHHHHHHHHhhHHhhcCCCCCCCCCCCCCCCCcchhHHHHHHHH
Q 000331 647 KLARESSGQYSDFNVLSSLNSQLFESSALMHI-SAVKSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSISFSVERMISIL 725 (1652)
Q Consensus 647 ~~~~~~~~~~~d~~il~si~~~LFesS~~L~~-~sl~~fv~ALc~lS~e~l~~~~~~~~~~~~~~~~~~~F~L~kL~ev~ 725 (1652)
...+... ..++ ....++++...+.++. .++..++++++.... + .| .+++.+++.
T Consensus 642 ~~~~~~~--~~~~---~~~~~~i~~~~s~~s~~~~~l~~~k~~~~~d~-----~------------~~---~~q~~v~~s 696 (1024)
T COG5307 642 SIVKKLG--SPEL---PKLNPDISSGKSKLSVWSAVLSVFKAILSSDL-----P------------SP---PLQKEVDIS 696 (1024)
T ss_pred ccccccc--Cccc---cccCcccccccccccccchHHHHHHHHHhccC-----C------------CC---CcHHhhhHH
Confidence 1100000 0011 1122567777788887 889999999997210 0 11 789999999
Q ss_pred HHhhccc---hhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhccchhhHHHHH
Q 000331 726 VNNLHRV---EPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECA 802 (1652)
Q Consensus 726 ~~N~~R~---~~iW~~l~~hli~v~~~~~~~lr~~Avd~L~~Li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ 802 (1652)
+.|+.++ ..+|..+....-.+..+.+..+..++.+..+++...+.+.+ +.....|+..
T Consensus 697 ~~n~~~i~~~~~i~~~~~~~~~~~~~~~~~~l~~s~~~~~~q~s~~f~~ie-------------------e~~~~~f~~~ 757 (1024)
T COG5307 697 KKNVDIIKSESKISNVLFKNSEGLSPDLNKTLLESALDSKSQLSSRFLEIE-------------------ELSDFGFQIA 757 (1024)
T ss_pred hhhhhhhhhhhHHHhhcccchhhccccccccchhcccchhhhhccccCChh-------------------hhcchhHHHH
Confidence 9999984 56999999999999999999999999999999888766432 1234568888
Q ss_pred HhccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCcccCChHHHHHHHhhhhcccchhHHHHHHHHHHHHHhccCCCCChh
Q 000331 803 VISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTD 882 (1652)
Q Consensus 803 ll~pl~~L~~~~~~~dIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~L~lI~~dfl~~Lp~~ 882 (1652)
++.|+.........+.|++..+.|.+.++++..+.+.+| +++|+++....... . ++..++.+.. .|. -..+.+
T Consensus 758 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~s~~~s~-~~i~~~~~~~~~~~--~-~~~~~s~~~~--~e~-v~s~~n 830 (1024)
T COG5307 758 LLLPFEYSVEVSLVVAVKELVIGCSDNLLTEAASSIASG-KTIFEISAYEDLSS--T-LRYILSSLSN--DEL-VLSQEN 830 (1024)
T ss_pred HhccccccccccceeeeeeeehhhHHHHHHHHHHhhhcc-ccceeeeecccccc--h-hhhHHHHhcc--hhh-hhChhh
Confidence 888888776667777999999999999999999999999 99999887653311 1 3444443322 122 223447
Q ss_pred hHHHHHHHHHHHHccCCCcchhHHHHHHHHHHHHHHHcccCCCchhhhhhhhcccCCCccccCcchhhhhhhccccccCC
Q 000331 883 CIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNH 962 (1652)
Q Consensus 883 ~~~~lV~~L~~F~~q~~dlNISLtAi~llW~isD~L~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~ 962 (1652)
+|...+-+-......+.++-+.+.++.++.........+ ...+ ... .
T Consensus 831 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w-k~~~--~~~---------------------~--------- 877 (1024)
T COG5307 831 LFIELLSSKNEGKQNDKNLELRLHSVDYLRFLLPNVENW-KNLS--SVL---------------------S--------- 877 (1024)
T ss_pred HHHHHHhhhHHHHHhccchhhhhccHHHHHHHhHHHHHH-HHHH--HHH---------------------H---------
Confidence 788888888888878888888888887776554444322 0000 000 0
Q ss_pred CCCcchhhhhHHHHHHHHHHhcc-CCcHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHhHHHhhhhhhccCCccc
Q 000331 963 SIGMVDRDKLLFAVFSLLKKLGA-DERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDE 1041 (1652)
Q Consensus 963 ~~~~~~~~~LW~~LL~~L~~L~~-D~R~EVRn~AIqTLfril~s~g~~ls~~~W~~~~~~VLFPLL~~l~~~~~~~~~~~ 1041 (1652)
.. ....+.|++.|.++.++.. -.-.|+ |..+..+++.+..++|+.+.+.-++|++....-+..+
T Consensus 878 -~~-~~~~~~~~~~l~~~~~i~~~~~~l~~--------f~~~l~~~d~~~~~~~e~i~~~~~~~~~~~~~~~~~~----- 942 (1024)
T COG5307 878 -AN-SNFSKDIFSYLEKYVKIGSSALDLEN--------FDQLLSLLDDFMSAFWEKISKKESFYIKSGASGPNSD----- 942 (1024)
T ss_pred -hh-hhhhHHHHHHHHHHHHhchhhhhHHH--------HHHHHHhhhHHHHHHHHHHhhhhhheeccccccCccc-----
Confidence 00 1124789999999988653 355565 8889999999999999999999999988866422111
Q ss_pred ccccccCcCCCccchhhcccccchhhhhHH-HHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHcCChhHH
Q 000331 1042 WQGKELGTRGGKAVHMLIHHSRNTAQKQWD-ETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEV 1120 (1652)
Q Consensus 1042 ~~~~~~~~~~~~~~~~~ihhsr~t~~k~W~-ET~vlal~gl~klf~~~~~~L~~l~~F~~~W~~lL~~l~~~~~~~~~el 1120 (1652)
+. .+. ++...-.|. .|.+.++...+-+|...++.+.. ..| .+.+...| .+..+++
T Consensus 943 ----~~--------~~~----~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~-----~~~--~~~l~~~c-~~~~~~~ 998 (1024)
T COG5307 943 ----KT--------NLD----NDEIELVWASTDLLAALKEFIELFNSIFEKLEI-----LAG--KLILLHQC-LNNCDQL 998 (1024)
T ss_pred ----cc--------ccc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH--HHHHHHhh-cCcHhhh
Confidence 00 001 234446787 78889999999999999987752 244 45555566 4445678
Q ss_pred HHHHHHHHHHHHH
Q 000331 1121 SLAAINCLQTTVL 1133 (1652)
Q Consensus 1121 s~a~~~~L~~lL~ 1133 (1652)
...+++++++.+-
T Consensus 999 ~~~~~~~~~~~~~ 1011 (1024)
T COG5307 999 GLGAIETLEEILW 1011 (1024)
T ss_pred hhhhHHHHhhhhH
Confidence 8888888888753
No 7
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=99.46 E-value=6.2e-14 Score=133.82 Aligned_cols=78 Identities=26% Similarity=0.480 Sum_probs=73.9
Q ss_pred chhhHHHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCcccCChHHHHHHHhhhhcccchhHHHHHHHHHHHH
Q 000331 794 GDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFI 871 (1652)
Q Consensus 794 ~~~~~lq~~ll~pl~~L~~~~~~~dIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~L~lI 871 (1652)
..++.||+.+|+||+.+|.++++.|||+++|+|+.++++++|++|++||++||++|+.++.+.++++|+.||+++++|
T Consensus 9 l~~~~fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~I 86 (86)
T PF09324_consen 9 LSNFNFQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQLI 86 (86)
T ss_pred ccccHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhhC
Confidence 345679999999999999999999999999999999999999999999999999999999988999999999999976
No 8
>KOG1846 consensus Uncharacterized conserved protein, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=6.7e-08 Score=118.55 Aligned_cols=563 Identities=16% Similarity=0.182 Sum_probs=319.4
Q ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCCCCCcccccccccCCC--CCCcccccccc-------CCCCCCHHHH
Q 000331 526 ILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNESDRRSAVLQSPG--SKRSESLVDQK-------DNIVLTPKNV 596 (1652)
Q Consensus 526 lL~gfq~~a~iag~l~L~~~rDafl~sL~k~t~~~~~~~~~~~~~~~sp~--s~~~~~~~~~~-------~~~~l~~Kni 596 (1652)
-.+|+.+.++.+|..|.....+..++-|+-+..-.. ..+.+.. .+|. .++....+.+. +.+....-+.
T Consensus 640 eedglakaarlscaagvaaicasalaflAaaecrke-eeeeREA--iepSdagmqnkcaVaQkLelegkcggifehlaet 716 (1777)
T KOG1846|consen 640 EEDGLAKAARLSCAAGVAAICASALAFLAAAECRKE-EEEEREA--IEPSDAGMQNKCAVAQKLELEGKCGGIFEHLAET 716 (1777)
T ss_pred chhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhh-HHHHhhh--cChHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 457888888888888877777766666655443210 0011100 0110 00000001100 2344577889
Q ss_pred HHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHhc---CCCC----C----------Cccc--------cccccc----
Q 000331 597 QALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAIH---SPHA----T----------TQEV--------STASSK---- 647 (1652)
Q Consensus 597 ~~lraLl~la~~lG~~L~~SW~~IL~tlq~l~~~~~---~p~~----~----------~~~~--------~~~~p~---- 647 (1652)
.|+-+-+......|..-.+.|++++..-.++-.+.. ..+. . ++.. ..+.|.
T Consensus 717 lCceadLrddaeaGshnddcqkhtcrscEhlgalehnhdeagaaihalscskcseqkaegeagilGdaeCeekPpehkfe 796 (1777)
T KOG1846|consen 717 LCCEADLRDDAEAGSHNDDCQKHTCRSCEHLGALEHNHDEAGAAIHALSCSKCSEQKAEGEAGILGDAECEEKPPEHKFE 796 (1777)
T ss_pred HHHHHHhhchhhhcCCCCccccccchHHHHHHHHHhhcccccccCCccchhccchhhhhccccccCChhhcCCCcccChh
Confidence 999999999999999999999999887666533221 1000 0 0000 000110
Q ss_pred --------------c-----cccc-cCccch---------------hhHHHHHHHHHHhh-ccCCChHHHHHHHHHHHHh
Q 000331 648 --------------L-----ARES-SGQYSD---------------FNVLSSLNSQLFES-SALMHISAVKSLLSALHQL 691 (1652)
Q Consensus 648 --------------~-----~~~~-~~~~~d---------------~~il~si~~~LFes-S~~L~~~sl~~fv~ALc~l 691 (1652)
+ +++. .|...+ +-.+.+-.+|+|+. +..|..-++..|.-++.+.
T Consensus 797 rqgredkeadkeeklsaaDlsiEgalGdapdfrggslmSghSaakaictLiakaDRffedacdeLcLmALgdfcvaiika 876 (1777)
T KOG1846|consen 797 RQGREDKEADKEEKLSAADLSIEGALGDAPDFRGGSLMSGHSAAKAICTLIAKADRFFEDACDELCLMALGDFCVAIIKA 876 (1777)
T ss_pred hcCcccccccccccccHHhhhhccccCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHh
Confidence 0 0000 010011 12344445899986 5778899999999999998
Q ss_pred hHHhhcCCCCC------CCCC---CCCCCCCcchhHHHHHHHH---HHhhcc----chhhHHHHHHHHHHH-hcCCChHH
Q 000331 692 SHQCMIGTSSS------FGPT---SSQKIGSISFSVERMISIL---VNNLHR----VEPLWDQVVGHFLEL-ADNSNQHL 754 (1652)
Q Consensus 692 S~e~l~~~~~~------~~~~---~~~~~~~~~F~L~kL~ev~---~~N~~R----~~~iW~~l~~hli~v-~~~~~~~l 754 (1652)
|...+-.+-.. ..|+ +.+ +......|.|+.+-. +....| ..-.|+.+..||+++ +||....+
T Consensus 877 SenqlFhsvTaqkdihLaaPgevkstq-drksalhLfRigdaiirilrhkaRPLlHqMfcwpLVaaHfVeasaCdkErhv 955 (1777)
T KOG1846|consen 877 SENQLFHSVTAQKDIHLAAPGEVKSTQ-DRKSALHLFRIGDAIIRILRHKARPLLHQMFCWPLVAAHFVEASACDKERHV 955 (1777)
T ss_pred hhcceeeeeccceeeEeecCcccccch-hhHHHHHHHHHHHHHHHHHHhcccchhHHHHHHhhhhHHHHhHHhhhhhhHH
Confidence 87654331100 0011 111 111123455665522 112224 366899999999999 67777788
Q ss_pred HHHHHHHHHHHHHHHhccccccccccccCCCChhhhhccchhhHHHHHHhccHHHHhc-cCCcHHHHHHHHHHHHHHHHh
Q 000331 755 RNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYF-STQSTDVRAGTLKILLHVLER 833 (1652)
Q Consensus 755 r~~Avd~L~~Li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~-~~~~~dIr~~iL~~L~~iL~~ 833 (1652)
...|+.++..++.+.|.. ..+.+ .+.|...+++||+..+. ..++.|++++.+..+.++++.
T Consensus 956 SqiAaSaiadilTelLtd-----wnEpP-------------gfhFNeaLfgPFeramclElCdEdtkdQflsSigeLVes 1017 (1777)
T KOG1846|consen 956 SQIAASAIADILTELLTD-----WNEPP-------------GFHFNEALFGPFERAMCLELCDEDTKDQFLSSIGELVES 1017 (1777)
T ss_pred HHHHHHHHHHHHHHHHhc-----cCCCC-------------CcchhHhhhchHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 888888888877766632 11222 23455577888887655 367889999999999999999
Q ss_pred cCCcccCChHHHHHHHhhhhcccch----hHH---------HHHHHHHHHHHhccCCCCC--hhhHHHHHHHHHHHHccC
Q 000331 834 CGEKLHYSWPSILELLRSVADASEK----DLI---------TLGFQSLRFIMNDGLSSIP--TDCIHECVDVTGAYSSQK 898 (1652)
Q Consensus 834 ~g~~L~sgW~~If~IL~~v~~~~~~----~lv---------~~aF~~L~lI~~dfl~~Lp--~~~~~~lV~~L~~F~~q~ 898 (1652)
+++.|.+||+.+|+-|.+|...+.. .++ --+|++++--.+ ..++| .+....||-|+.+|.+.-
T Consensus 1018 cadkIgSGWkPLFgaLeaVgggnksemkaaldedysmgKghacafDVfeafLn--iDnipVfanaalecimClmkflkgl 1095 (1777)
T KOG1846|consen 1018 CADKIGSGWKPLFGALEAVGGGNKSEMKAALDEDYSMGKGHACAFDVFEAFLN--IDNIPVFANAALECIMCLMKFLKGL 1095 (1777)
T ss_pred HHHHhcccchhhHHHHHHhcCCcHHHHHHHHhcccccccccchhhHHHHHHhc--cCchHhHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999753211 111 146777664332 12333 366889999999998865
Q ss_pred C-----------------CcchhHHHHHHHHHHHHHHHccc--CCCch---------hhhhhhhcccCCCccccCcchhh
Q 000331 899 T-----------------ELNISLTAVGLLWTTTDFIAKGL--VHGIS---------EEKEAANQDLCSVPKQMDGEKRE 950 (1652)
Q Consensus 899 ~-----------------dlNISLtAi~llW~isD~L~~~~--~~~~~---------~~k~~~~~~~~~~~~~~~~~~~e 950 (1652)
. .....|.|+.++.+|+..+.+-. .++.. ..|-... ..++....|
T Consensus 1096 eevDckeigdcapapgapstdKOGaALdlLpncsqLiakiYkmPhkPifhlghladLprkcldq-------samdeDgIE 1168 (1777)
T KOG1846|consen 1096 EEVDCKEIGDCAPAPGAPSTDLCLAALDLLPNCSQLIAKIYKMPHKPIFHLGHLADLPRKCLDQ-------SAMDEDGIE 1168 (1777)
T ss_pred cccccchhcccCCCCCCCcchhhHHHHHHHHhHHHHHHHHHcCCCchhhhhhhhhcchHHHHhh-------hhcccCCcc
Confidence 4 23467899999999998776531 11100 0000000 000000001
Q ss_pred hhhhccccc-cCCCCCcchhhhhHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHhHHhHHH
Q 000331 951 EKTLSNLDD-QNHSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHG-QKLSESMWEDCLWNYVFPMLD 1028 (1652)
Q Consensus 951 ~~~~~l~~~-~~~~~~~~~~~~LW~~LL~~L~~L~~D~R~EVRn~AIqTLfril~s~g-~~ls~~~W~~~~~~VLFPLL~ 1028 (1652)
.--..+|-. +.. .......+|..++..+.....+.-|.-...-+..+|+.|..-. .-|.+.+=-.|+..+++|.+.
T Consensus 1169 sphgpfpvledfd--ddiagiElfiiflEQicaallncppnhQknlLDlifeLLrDiskkPlGadfGgvamsaliLPvmq 1246 (1777)
T KOG1846|consen 1169 SPHGPFPVLEDFD--DDIAGIELFIIFLEQICAALLNCPPNHQKNLLDLIFELLRDISKKPLGADFGGVAMSALILPVMQ 1246 (1777)
T ss_pred CCCCCcccccccc--ccchhHHHHHHHHHHHHHHHhcCCcccCccHHHHHHHHHHHhccCCCCCCCccchhhHHHHHHHH
Confidence 000000000 000 1122347999999888776566666667777888888886432 233444444678888899888
Q ss_pred hhhhhhccCCcccccccccCcCCCccchhhcccccchhhhhHHH---HHHHHHHHHHHHHHhhhhhhccccchHH-----
Q 000331 1029 CASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNTAQKQWDE---TLVLVLGGIARLLRSFFPFLANLSNFWT----- 1100 (1652)
Q Consensus 1029 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ihhsr~t~~k~W~E---T~vlal~gl~klf~~~~~~L~~l~~F~~----- 1100 (1652)
.-..-. +.+..-|+- -...++..-+.+...+.+.... +++.+
T Consensus 1247 kWiRRl-----------------------------dkdesywdmakaifKhaIGaccelVidhielekh-SswddRlerd 1296 (1777)
T KOG1846|consen 1247 KWIRRL-----------------------------DKDESYWDMAKAIFKHAIGACCELVIDHIELEKH-SSWDDRLERD 1296 (1777)
T ss_pred HHHHHh-----------------------------chhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhh-chHHHHHHHH
Confidence 654210 112245652 4567788888888887765433 22221
Q ss_pred ---HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHH
Q 000331 1101 ---GWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKGNLPVAYLNSVLDVY 1153 (1652)
Q Consensus 1101 ---~W~~lL~~l~~~~~~~~~els~a~~~~L~~lL~~~~~~~~~~~~~~~~~~~~w 1153 (1652)
.-.+.++|...|....-..+..++-+|.+-+|...++++ +++.|..+....
T Consensus 1297 IcalikdcfefdkaCaaaPaefiliagcsciryvlvtagpkF--seemWniaccaL 1350 (1777)
T KOG1846|consen 1297 ICALIKDCFEFDKACAAAPAEFILIAGCSCIRYVLVTAGPKF--SEEMWNIACCAL 1350 (1777)
T ss_pred HHHHHHHHHHHHHHHhhCcHHHHHHhhcchheeeeeccCccc--cHHHHHHHHHHH
Confidence 122223333333333334556666666666655444444 577777555433
No 9
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=98.76 E-value=0.00042 Score=97.63 Aligned_cols=265 Identities=15% Similarity=0.153 Sum_probs=151.2
Q ss_pred HhHhHHHHHHhhhcchhhhhhhhHHHHHhhcccccccCCCCCCcchHHHHHHHHHHHHHhhhhHhhhhcccccCChHHHH
Q 000331 1325 EKLIPVVVDLFLKAPAVEKCIIFPEIIQNLGRCMTTRRDNPDSSLWRLAVEGFNHILVDDVTKLAANFWQDMKISRPARL 1404 (1652)
Q Consensus 1325 ~~~~~~~~~l~~~~p~~~~~~~~~~i~~~l~~~~~~k~~~~~~~~Wk~a~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~ 1404 (1652)
-.++.-+++||.++=....+ .+++++.-|.-|+.-- ..++=|..++|+.+.+....+. ++ +
T Consensus 1437 ~~AL~~lvdLft~fFd~L~~-~L~~~l~ll~~ci~q~----n~~la~ig~~~l~~li~~ng~~----------F~----~ 1497 (1780)
T PLN03076 1437 TLALQLVVDLFVKFYPTVNP-LLKKVLMLLVSFIKRP----HQSLAGIGIAAFVRLMSNAGHL----------FS----D 1497 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCc----hHHHHHHHHHHHHHHHHHhhcc----------CC----H
Confidence 34455557777665333444 5588888888887754 7788888888888888766433 22 2
Q ss_pred HhHHHHHHHhhhhhcccCC-C-CCCC-CCCCchhccccch-----------------------hh---chH-HHH-----
Q 000331 1405 RVWKEVADVYEIFLVGYCG-R-ALPS-NSLSAVALSGADE-----------------------SL---EMS-ILD----- 1449 (1652)
Q Consensus 1405 ~~W~~v~~~~~~~l~~~~~-~-~~~~-~~~~~~~~~~~dE-----------------------~~---d~~-~~~----- 1449 (1652)
.-|..|++.+....-...- . ..|. ...+.+...+.+. .+ -|. ++.
T Consensus 1498 ~~W~~i~~~~~~lf~~T~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~kc~~v~QLllI~ 1577 (1780)
T PLN03076 1498 EKWLEVVLSLKEAANATLPDFSYVVSGEYMPAENIQDSENAEAASSSTADNDAEAERSRRLYAAISDAKCRAAVQLLLIQ 1577 (1780)
T ss_pred HHHHHHHHHHHHHHHHhCCchhhcccccccccccccccccccccccccccchhhhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4499999998886544210 0 0000 0000000000000 00 010 111
Q ss_pred HhhhhccCCCCCCChHhhhhhHhhhhhcc---c-------------CCCCCCccccccCccchhhhHHH-HHHHHhhhhc
Q 000331 1450 ILGDKILKSPIDAPFDVLQRLISTIDRCA---S-------------RTCSLPVETVELMPAHCSKFSLA-CLHKLFSLSS 1512 (1652)
Q Consensus 1450 ~l~~~i~~~~~~~p~~~~~~l~~l~~~~~---~-------------r~~~~~~~t~~~~~~~r~r~a~~-c~d~Lf~l~s 1512 (1652)
.+.+..=-+...+|..-+.+|.++|..-- . |-|... +-.+|.-.+-|.=||. |+..||.+-.
T Consensus 1578 ~~~~l~~~~~~~l~~~~l~~l~~~L~~s~~fA~~fN~d~~lR~~l~~~g~~~-~~~~PnLLkqE~~s~~~~l~il~~~~~ 1656 (1780)
T PLN03076 1578 AVMEIYNMYRPRLSAKNTLVLFDALHTVASHAHKINSDTALRSKLQELGSMT-QMQDPPLLRLENESYQICLTFLQNLIL 1656 (1780)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhhhcc-cCCCCchhhHhHHHHHHHHHHHHHHhc
Confidence 11111001245677777767766664211 0 222110 0012444445667777 7899999887
Q ss_pred CCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccc------------ccCCCCCChhHHHH-------HHHHHHHH
Q 000331 1513 SDNEASKWNLTRAEVSKISITVLMGRCEYILNRFLIDEN------------DLGERNFPAARLEE-------IIFILQEL 1573 (1652)
Q Consensus 1513 ~~~~~~~~~~~~~~~a~~~~p~Ll~Rc~~~L~~yi~D~~------------l~G~~P~P~~r~~E-------l~~vL~~l 1573 (1652)
..+.. ..+.. +--.|+.=|+.+|+.|+.=.. -+=.+|+-..+++| +..||+++
T Consensus 1657 d~~~~----~~~~~----~~~~l~~~c~~il~~y~~l~~~~~~~~~~~~~~~~~~~p~~~~~~r~i~a~~pv~v~il~~~ 1728 (1780)
T PLN03076 1657 DKPPL----AKEAE----VESRLVELCEEVLQFYIETSTAGQDSEDSSSQQPRWLIPLGSGKRRELAARAPLVVATLQAV 1728 (1780)
T ss_pred CCCcc----chHHH----HHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccchhHHHHHhcchHHHHHHHHH
Confidence 43211 12222 445688889999999964211 01134555667777 55677777
Q ss_pred HhcccCcccccCCCCCcccccccccCcCCCcccchhhhhhhhhhheec--chhHHHHHHHHHHH-HHhhh
Q 000331 1574 ARLKIHPDTASALPLHPVLKSGLAMDENSDKRPHLLVLFPSFCELVIS--REARVRELVQVLLR-LITKE 1640 (1652)
Q Consensus 1574 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hL~~lyp~l~~~~~~--~~~~v~~ll~~~l~-~vg~e 1640 (1652)
.+|- +.+.++|+-.+||++|+++.+ ...+|+.+|+.+|. .||-.
T Consensus 1729 ~~l~-----------------------~~~f~~~~~~~y~l~~~l~~~e~~~~e~r~~l~~~~~~rvg~~ 1775 (1780)
T PLN03076 1729 CGLG-----------------------DSSFEKNLVRFFPLLAGLISCEHGSNEVQVALSDMLSSWVGPV 1775 (1780)
T ss_pred hcCC-----------------------HHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhhh
Confidence 5432 244799999999999999965 45899999999999 78863
No 10
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=1.5e-06 Score=113.08 Aligned_cols=470 Identities=16% Similarity=0.123 Sum_probs=290.7
Q ss_pred cchHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCC----------C-------------------------
Q 000331 1096 SNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKG----------N------------------------- 1140 (1652)
Q Consensus 1096 ~~F~~~W~~lL~~l~~~~~~~~~els~a~~~~L~~lL~~~~~~~----------~------------------------- 1140 (1652)
.+|.++|..-|+.+..-...++.+|..||-++++.+........ +
T Consensus 9 ~sl~~aL~adLrsLsseArkKnn~VK~aAdkSi~~Lr~isS~s~ds~vlet~~edf~~PfllaC~sr~tRl~~ials~iQ 88 (1610)
T KOG1848|consen 9 MSLVRALLADLRSLSSEARKKNNEVKLAADKSIQELRQISSASRDSDVLETPNEDFLVPFLLACISRNTRLFVIALSCIQ 88 (1610)
T ss_pred HHHHHHHHHHHHHhhHHHHhhchHHHHHHHhHHHHHHhhccccccccccccCCcccccceeeecccCcccceeeHHHHHH
Confidence 35667899999999999999999999999999998865542110 0
Q ss_pred -------CC---------hhHHHHHHHHHHHhhcCCCCCCC-------CCCcchhHHHHHHHHHHHHHHHhhCC--HHHH
Q 000331 1141 -------LP---------VAYLNSVLDVYEYALQKSPNYSD-------NAAGKVKQEILHGLGELYVQAQKMFD--DRMY 1195 (1652)
Q Consensus 1141 -------~~---------~~~~~~~~~~w~~~~~~~~~~~~-------~~~~~~~q~~l~~f~~ly~~~~~~~~--~~~~ 1195 (1652)
++ ...|..+|.-|..+.-..+.|-- ...+.+..-++.||+-+|++.+..++ ...+
T Consensus 89 kL~~~dsleps~~aeildn~L~a~~qae~~QLrvLQtiPii~~syl~fi~~p~l~kll~iCfnLl~~knkvV~NaAaAtl 168 (1610)
T KOG1848|consen 89 KLGRHDSLEPSVTAEILDNNLWAAAQAEWIQLRVLQTIPIIFFSYLTFITGPPLLKLLIICFNLLYQKNKVVFNAAAATL 168 (1610)
T ss_pred HHhccCCCCCcccHHHHHHHHHHHHHHHHHHHhhhccccceeeeceeeccCcHHHHHHHHHHHHHcCCCcceechhHHHH
Confidence 11 24566677777644211111110 01223445567799999996555554 3555
Q ss_pred HHHHHHHHHHHHcccCCCCCCccccC-----CCCHHHHHHHHhccccCCC-----ccchhhHHHHHHHHHccCCCCCCCC
Q 000331 1196 GQLLAIIDLAVRQTMITHDNYEIEFG-----HVPPVLRTILEILPLLSPT-----EQLCSMWLVLLREILQYLPRSDSPL 1265 (1652)
Q Consensus 1196 ~~~l~~l~~~~~~~~~~~~~~~~d~~-----~~s~lQ~~vl~~l~~i~~~-----~~~~~~~~~~~~~l~~f~~~~~~~~ 1265 (1652)
+|+. +..|-+.|+. .+.++...+ +.++.|.+.+..+.-+..+ ..++.|+|....+.|.|++..+.++
T Consensus 169 rQlV--~~vFdrv~ie-s~~~d~~l~sl~~~s~t~sl~aa~~~~~~l~~dI~~~~~~i~l~~~~~~~~~L~~Iee~~~s~ 245 (1610)
T KOG1848|consen 169 RQLV--LLVFDRVPIE-SDAFDFILPSLTEASGTSSLEAALTALDPLQKDICVGFENIQLMYPAIFDQLLAFIEESTKSP 245 (1610)
T ss_pred HHHH--HHHHHhcccc-cccccccchhhhccCCccchhhcccccchHHHhHhcchHHHHHhcccccHhHHhcchhccccc
Confidence 5543 3344444432 222222222 3444444444443332221 1356677788888888886655443
Q ss_pred CCCCCCCCCCCCCCccccccc--ccccCCCCCCCCCCcchhhhhhhccCCcccccchHH-HHHhHhHHHHHHhhh---cc
Q 000331 1266 QKKEDEEEPPSTSDNIHDVHV--RTKYDKPNGTAPTTPKDASALSESSGSVTAAIPNHL-FAEKLIPVVVDLFLK---AP 1339 (1652)
Q Consensus 1266 ~~~~~~~~~~~t~~~~~~~~~--~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~---~p 1339 (1652)
...- +...+. +.++.-++.+.. .+++ ...++ |.+.+....|+++.. .+
T Consensus 246 ~~el-----------Lesilks~~s~~dq~qdf~~--a~ll-------------~~~~~Py~~Rl~~~sv~~i~~l~~~e 299 (1610)
T KOG1848|consen 246 GLEL-----------LESILKSNASKSDQIQDFAP--AELL-------------ALNVVPYAERLLLRSVDLIQKLACHE 299 (1610)
T ss_pred hhhh-----------hhhhhhcchhhhHHHHHhhH--HHHH-------------HhhhHHHHHHHHHHHHHHHHHHhccH
Confidence 2211 111110 000000000000 0000 01122 666666666664444 46
Q ss_pred hhhhhhhhHHHHHhhcc-------cccccCCCCCCcchHHHHHHHHHHHHHhhhhHhhhhcccccCChHHHHHhHHHHHH
Q 000331 1340 AVEKCIIFPEIIQNLGR-------CMTTRRDNPDSSLWRLAVEGFNHILVDDVTKLAANFWQDMKISRPARLRVWKEVAD 1412 (1652)
Q Consensus 1340 ~~~~~~~~~~i~~~l~~-------~~~~k~~~~~~~~Wk~a~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~W~~v~~ 1412 (1652)
.+.+.+.+-.+|+.+.. |-..+|.|+....|+++....+.+...++|....-.. --.+..+|.+..-
T Consensus 300 a~~~~ev~lnvi~slisn~~ll~~~~~~s~~~~kdlv~~l~~~v~l~~~~i~v~~~v~la~------~lk~~s~~~~~~p 373 (1610)
T KOG1848|consen 300 AVVNEEVLLNVIKSLISNTNLLFDPESLSYPCSKDLVWKLAVSVLLYVLSIGVPVAVFLAS------LLKFDSMDLELWP 373 (1610)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchhhccccccHHHHhHHhHHHheeecccCcchhhhHHH------HhhhhhcCcccCc
Confidence 66666666677776666 9999999999999999999999999999987554331 1346778888888
Q ss_pred HhhhhhcccCCCCCCCCCCCchhccccchhhchHHHHHhhhhccCCCCCCChHhhh----hhHhhhhhcccCCCCCCccc
Q 000331 1413 VYEIFLVGYCGRALPSNSLSAVALSGADESLEMSILDILGDKILKSPIDAPFDVLQ----RLISTIDRCASRTCSLPVET 1488 (1652)
Q Consensus 1413 ~~~~~l~~~~~~~~~~~~~~~~~~~~~dE~~d~~~~~~l~~~i~~~~~~~p~~~~~----~l~~l~~~~~~r~~~~~~~t 1488 (1652)
.+..|++... .++.+.++-.+. +.+.++....+.+-.+++|...-++..++. .+...++.++.--|......
T Consensus 374 ~~l~~~~~~s---iv~k~dsi~~~t-rn~diktk~thlldk~~~plan~vy~~lv~ti~nsi~e~l~k~s~esg~~eFt~ 449 (1610)
T KOG1848|consen 374 RFLDFLFLKS---IVPKNDSIQIFT-RNFDIKTKVTHLLDKEILPLANFVYKELVGTISNSIQEMLNKSSIESGGSEFTS 449 (1610)
T ss_pred cHhHHHhhcc---CCCCchhhHHHH-hhcccCcchHHHHhhcccccchhHHHHHHHhhhHHHHHHHHHhHHhhcCccchh
Confidence 8888888863 233545555666 666777889999999999988888877665 55666666554333221111
Q ss_pred cccCccchhhhHHHHHHHHhhhhcCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCChhHHHHHHH
Q 000331 1489 VELMPAHCSKFSLACLHKLFSLSSSDNEASKWNLTRAEVSKISITVLMGRCEYILNRFLIDENDLGERNFPAARLEEIIF 1568 (1652)
Q Consensus 1489 ~~~~~~~r~r~a~~c~d~Lf~l~s~~~~~~~~~~~~~~~a~~~~p~Ll~Rc~~~L~~yi~D~~l~G~~P~P~~r~~El~~ 1568 (1652)
-+.--..|+.+...|+..|-++..... ...++.-...+++...+..|.+.+.+.|..|+.+.|++|.|+...-|+++
T Consensus 450 k~k~Ie~~~dnds~stavl~~l~~~~~---~li~e~~~ss~~avSt~~~~a~~v~~l~~~~~~~s~k~~l~~~~kLe~i~ 526 (1610)
T KOG1848|consen 450 KEKGIELREDNDSMSTAVLLQLSFSNK---VLIPEGLYSSRMAVSTLLKRAQDVLHLYIEDEVLSNKCPLPRQTKLEIIF 526 (1610)
T ss_pred hhcCceeeccCchHHHHHHHHHHhhhh---hhccccchhhhHHHHHHHHHHHHHHHHhhhhhhhccCCccccceeehhHH
Confidence 111122257788888888876665321 22345556788999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCcccccCCCCCcccccccccCcCCCcccchhhhhhhhhh
Q 000331 1569 ILQELARLKIHPDTASALPLHPVLKSGLAMDENSDKRPHLLVLFPSFCE 1617 (1652)
Q Consensus 1569 vL~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hL~~lyp~l~~ 1617 (1652)
+- .+..++.-. ..+++..+...+...+.+++-.||.+..
T Consensus 527 ~a----~~snq~til------dalks~l~~st~e~is~qvl~s~stlts 565 (1610)
T KOG1848|consen 527 DA----VLSNQSTIL------DALKSTLPESTDEIISAQVLASYSTLTS 565 (1610)
T ss_pred HH----HhhccccHH------HHhhhhccccccchhhHHHHhchHHHHh
Confidence 65 333333211 1123333345667789999999999984
No 11
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=0.0025 Score=71.02 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=27.5
Q ss_pred CCchhhHHHHHHHHHHH------------------HHHHHHhcccccccCC
Q 000331 440 VASEAHSITLAIEGLLG------------------VVFTVATLTDEAVDVG 472 (1652)
Q Consensus 440 l~~Ea~~I~~~~e~~a~------------------~i~sv~~L~~~~~~~g 472 (1652)
+|||+|+|+|+||.||. +.|++||+|+.-.|..
T Consensus 153 LPGEaQKIdRmmEaFA~rYclcNPgvfqstDtcyvlsfs~IMlNTsLHNpN 203 (395)
T KOG0930|consen 153 LPGEAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYVLSFAIIMLNTSLHNPN 203 (395)
T ss_pred CCchHHHHHHHHHHHHHHHhccCCcccccCceeeeeeehhhhhcccccCCC
Confidence 89999999999999997 2479999998654433
No 12
>KOG0931 consensus Predicted guanine nucleotide exchange factor, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.04 E-value=0.1 Score=62.27 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=26.0
Q ss_pred cCCchhhHHHHHHHHHHH---------------------HHHHHHhccccc
Q 000331 439 LVASEAHSITLAIEGLLG---------------------VVFTVATLTDEA 468 (1652)
Q Consensus 439 ll~~Ea~~I~~~~e~~a~---------------------~i~sv~~L~~~~ 468 (1652)
.++||||+|+|++|.|+. ++|+||+||++-
T Consensus 289 rvqgEAqKveRlIeAFsqrYc~cNP~~v~qfrnpDTIfiLaFAIIlLNTDm 339 (627)
T KOG0931|consen 289 RVQGEAQKVERLIEAFSQRYCKCNPKVVRQFRNPDTIFILAFAIILLNTDM 339 (627)
T ss_pred ecccHHHHHHHHHHHHHHHHhccCHHHHhhccCCCeehHHHHHHHHhcccc
Confidence 489999999999999985 367999999873
No 13
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=91.75 E-value=51 Score=42.66 Aligned_cols=146 Identities=15% Similarity=0.178 Sum_probs=100.9
Q ss_pred cchhHHHHHHHHHHhhcc-chhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhc
Q 000331 714 ISFSVERMISILVNNLHR-VEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESR 792 (1652)
Q Consensus 714 ~~F~L~kL~ev~~~N~~R-~~~iW~~l~~hli~v~~~~~~~lr~~Avd~L~~Li~~~l~~~~f~~~~~~~~~~~~~~~~~ 792 (1652)
..+.+.|++-++...+.. .....-.+++++..=..|+|+.+|..|+..|..+....+
T Consensus 54 ~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~---------------------- 111 (526)
T PF01602_consen 54 KDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRTPEM---------------------- 111 (526)
T ss_dssp SSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHH----------------------
T ss_pred CCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccch----------------------
Confidence 367888999988777664 567888999999988899999999999999988653211
Q ss_pred cchhhHHHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCcccCChHHHHHHHhhhhcccchhHHHHHHHHHHHH-
Q 000331 793 HGDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFI- 871 (1652)
Q Consensus 793 ~~~~~~lq~~ll~pl~~L~~~~~~~dIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~L~lI- 871 (1652)
.+ .+..++..+. .++++.||+..+-|+.++.+.+.+.+..+| +..+.....+.++.++..|...+.-|
T Consensus 112 ------~~-~l~~~v~~ll-~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~---~~~l~~lL~d~~~~V~~~a~~~l~~i~ 180 (526)
T PF01602_consen 112 ------AE-PLIPDVIKLL-SDPSPYVRKKAALALLKIYRKDPDLVEDEL---IPKLKQLLSDKDPSVVSAALSLLSEIK 180 (526)
T ss_dssp ------HH-HHHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHCHCCHHGGH---HHHHHHHTTHSSHHHHHHHHHHHHHHH
T ss_pred ------hh-HHHHHHHHHh-cCCchHHHHHHHHHHHHHhccCHHHHHHHH---HHHHhhhccCCcchhHHHHHHHHHHHc
Confidence 11 2334444553 356789999999999999999888776554 44454444566777888888888877
Q ss_pred HhccCCCCChhhHHHHHHHHHHHH
Q 000331 872 MNDGLSSIPTDCIHECVDVTGAYS 895 (1652)
Q Consensus 872 ~~dfl~~Lp~~~~~~lV~~L~~F~ 895 (1652)
.++.... +.+..++..|.+..
T Consensus 181 ~~~~~~~---~~~~~~~~~L~~~l 201 (526)
T PF01602_consen 181 CNDDSYK---SLIPKLIRILCQLL 201 (526)
T ss_dssp CTHHHHT---THHHHHHHHHHHHH
T ss_pred cCcchhh---hhHHHHHHHhhhcc
Confidence 3322100 23455555555443
No 14
>PTZ00429 beta-adaptin; Provisional
Probab=84.97 E-value=1.6e+02 Score=39.91 Aligned_cols=139 Identities=12% Similarity=0.048 Sum_probs=67.9
Q ss_pred hcChhHHHHHHHHHHHHhCCCCCCcccCchhHHHHHHHHhcCCCchhHHHHHHHHHHHHhcCC----CCcchHHHHHHHH
Q 000331 20 RRYPAVKDGAEHAILKLRSLSSPSELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDA----VAPSALKEIFSML 95 (1652)
Q Consensus 20 Rk~~~lk~A~e~sl~~Lk~~~~~~~l~~~~~~l~PfllaC~skn~kl~~iaL~~lqkLi~~~~----i~~~~l~~Il~~l 95 (1652)
-++|-||.+|=-++.+|=... .++.....++.=+.-....+++-++.-|+.+|..+-..+- +....+..+++.|
T Consensus 151 D~~pYVRKtAalai~Kly~~~--pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L 228 (746)
T PTZ00429 151 DPDPYVRKTAAMGLGKLFHDD--MQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHL 228 (746)
T ss_pred CCCHHHHHHHHHHHHHHHhhC--cccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHh
Confidence 356777766666665553221 1222222222222222346677777777777777755431 1122344455555
Q ss_pred HcccCCCCchHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHhhhccccCChHHHHHHHHHHH-------HHHHHHHHHh
Q 000331 96 KNHADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQALGICLRLLENNRSSDSVRNTAAATF-------RQAVALIFDH 168 (1652)
Q Consensus 96 ~~~~~~~~e~VqLkILQ~L~~l~~s~~~~~~g~~L~~~l~~C~~L~~~sk~~~~v~~TA~ATL-------~Qlv~~VF~r 168 (1652)
.+| +|--|+.||++|.... + -..+.....+.......+ +.|+.||-.++.+-+ .+++..++.|
T Consensus 229 ~e~----~EW~Qi~IL~lL~~y~--P---~~~~e~~~il~~l~~~Lq-~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~r 298 (746)
T PTZ00429 229 PEC----NEWGQLYILELLAAQR--P---SDKESAETLLTRVLPRMS-HQNPAVVMGAIKVVANLASRCSQELIERCTVR 298 (746)
T ss_pred hcC----ChHHHHHHHHHHHhcC--C---CCcHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 444 3456888888884311 1 112223344444433323 344536666666533 2445555555
Q ss_pred hh
Q 000331 169 VV 170 (1652)
Q Consensus 169 v~ 170 (1652)
+.
T Consensus 299 l~ 300 (746)
T PTZ00429 299 VN 300 (746)
T ss_pred HH
Confidence 54
No 15
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=80.43 E-value=85 Score=35.73 Aligned_cols=176 Identities=14% Similarity=0.175 Sum_probs=104.0
Q ss_pred hhHHHHHHHHHHh--hccchhhHHHHH---HHHHHHhcCCChHHHHHHHHHHHHHHHHHhccccccccccccCCCChhhh
Q 000331 716 FSVERMISILVNN--LHRVEPLWDQVV---GHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVE 790 (1652)
Q Consensus 716 F~L~kL~ev~~~N--~~R~~~iW~~l~---~hli~v~~~~~~~lr~~Avd~L~~Li~~~l~~~~f~~~~~~~~~~~~~~~ 790 (1652)
=.+++|..++..| ......+++.+. .-+.....+.+..+...|...+..++... +.
T Consensus 26 ~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l-~~------------------ 86 (228)
T PF12348_consen 26 EALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQL-GS------------------ 86 (228)
T ss_dssp HHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHH-GG------------------
T ss_pred HHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hH------------------
Confidence 3667777777777 233466666666 33334444457888888999988887632 21
Q ss_pred hccchhhHHHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCcccCChHHHHHHHhhhhcccchhHHHHHHHHHHH
Q 000331 791 SRHGDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRF 870 (1652)
Q Consensus 791 ~~~~~~~~lq~~ll~pl~~L~~~~~~~dIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~L~l 870 (1652)
.+..+-..++.++.... .....-|++..-+||..|++.++ ..=++++.++......+++.+-..+.+.+..
T Consensus 87 ----~~~~~~~~~l~~Ll~~~-~~~~~~i~~~a~~~L~~i~~~~~----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~ 157 (228)
T PF12348_consen 87 ----HFEPYADILLPPLLKKL-GDSKKFIREAANNALDAIIESCS----YSPKILLEILSQGLKSKNPQVREECAEWLAI 157 (228)
T ss_dssp ----GGHHHHHHHHHHHHHGG-G---HHHHHHHHHHHHHHHTTS-----H--HHHHHHHHHHTT-S-HHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHHH-ccccHHHHHHHHHHHHHHHHHCC----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 01122223455555553 34456899999999999999765 1115558888877777777777788888988
Q ss_pred HHhccC---CCCCh-hhHHHHHHHHHHHHccCCCcchhHHHHHHHHHHHHHHHc
Q 000331 871 IMNDGL---SSIPT-DCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAK 920 (1652)
Q Consensus 871 I~~dfl---~~Lp~-~~~~~lV~~L~~F~~q~~dlNISLtAi~llW~isD~L~~ 920 (1652)
++..+- ..+.. ..+..++.++.++..- .+..+--.|-..||.+......
T Consensus 158 ~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D-~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 158 ILEKWGSDSSVLQKSAFLKQLVKALVKLLSD-ADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHTT-----GGG--HHHHHHHHHHHHHHHTS-S-HHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHccchHhhhcccchHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHCCH
Confidence 887765 22322 2367888888888754 3677777788999988766654
No 16
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.25 E-value=29 Score=49.12 Aligned_cols=41 Identities=22% Similarity=0.523 Sum_probs=35.4
Q ss_pred CCcHHHHHHHHHHHHHHHHhcCCccc-CChHHHHHHHhhhhc
Q 000331 814 TQSTDVRAGTLKILLHVLERCGEKLH-YSWPSILELLRSVAD 854 (1652)
Q Consensus 814 ~~~~dIr~~iL~~L~~iL~~~g~~L~-sgW~~If~IL~~v~~ 854 (1652)
....+||.+.++.+..++..+|+.+. .-|..||.++-.+++
T Consensus 1185 ~~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~~~fpIF~ 1226 (1514)
T KOG0929|consen 1185 DYRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFRILFPIFD 1226 (1514)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHheeeccc
Confidence 45579999999999999999999996 689999997766655
No 17
>PTZ00429 beta-adaptin; Provisional
Probab=76.28 E-value=3e+02 Score=37.46 Aligned_cols=62 Identities=15% Similarity=0.094 Sum_probs=43.8
Q ss_pred HHHHHHhhcChhHHHHHHHHHHHHhCCCCCCcccCchhHHHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 000331 13 ALSAEARRRYPAVKDGAEHAILKLRSLSSPSELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISH 80 (1652)
Q Consensus 13 ~L~~EskRk~~~lk~A~e~sl~~Lk~~~~~~~l~~~~~~l~PfllaC~skn~kl~~iaL~~lqkLi~~ 80 (1652)
+|....+-+||-+|-.|=+.+..++.- .-.+.++.|+.-++..+++.+-..|.-|+-|+...
T Consensus 109 tl~KDl~d~Np~IRaLALRtLs~Ir~~------~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~ 170 (746)
T PTZ00429 109 TFLQDTTNSSPVVRALAVRTMMCIRVS------SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHD 170 (746)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHcCCcH------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Confidence 334555566777887777776665541 11245667777888888999999999999998654
No 18
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=74.60 E-value=2.5 Score=46.98 Aligned_cols=32 Identities=16% Similarity=0.304 Sum_probs=27.1
Q ss_pred cCCchhhHHHHHHHHHHH-------------------HHHHHHhccccccc
Q 000331 439 LVASEAHSITLAIEGLLG-------------------VVFTVATLTDEAVD 470 (1652)
Q Consensus 439 ll~~Ea~~I~~~~e~~a~-------------------~i~sv~~L~~~~~~ 470 (1652)
.+|||+|.|+|++|.|++ ++|+++||+++..|
T Consensus 93 ~lpgE~Q~Idrile~Fs~~y~~~Np~~~~~~~d~v~~l~~sllmLnTdlHn 143 (185)
T cd00171 93 RLPGEAQKIDRLLEKFSERYCECNPGIFSSSADAAYTLAYSIIMLNTDLHN 143 (185)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHCCCCCCCChhHHHHHHHHHHHHhHHhcC
Confidence 389999999999999996 35799999987543
No 19
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=73.34 E-value=6 Score=30.23 Aligned_cols=28 Identities=32% Similarity=0.364 Sum_probs=22.0
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHHHHH
Q 000331 977 FSLLKKLGADERPEVRNSAIRTLFQTLG 1004 (1652)
Q Consensus 977 L~~L~~L~~D~R~EVRn~AIqTLfril~ 1004 (1652)
+-.+.++..|+-++||..|+++|-++..
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 3455677889999999999999987764
No 20
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=71.00 E-value=98 Score=39.71 Aligned_cols=234 Identities=14% Similarity=0.123 Sum_probs=0.0
Q ss_pred cCCChHHHHHHHHHHHHhhHHhhcCCCCCCCCCCCCCCCCcchhHHHHHHHH---HHhhccchhhHHHHHHHHHHHh--c
Q 000331 674 ALMHISAVKSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSISFSVERMISIL---VNNLHRVEPLWDQVVGHFLELA--D 748 (1652)
Q Consensus 674 ~~L~~~sl~~fv~ALc~lS~e~l~~~~~~~~~~~~~~~~~~~F~L~kL~ev~---~~N~~R~~~iW~~l~~hli~v~--~ 748 (1652)
..+|++++..+|..||. .+.+..+.+-+ +.|+-+ ...+......+..+. .
T Consensus 208 ~~iP~~sl~~~i~vLCs------------------------i~~~~~l~~~~w~~m~nL~~-S~~g~~~i~~L~~iL~~~ 262 (464)
T PF11864_consen 208 GDIPSESLSPCIEVLCS------------------------IVNSVSLCKPSWRTMRNLLK-SHLGHSAIRTLCDILRSP 262 (464)
T ss_pred CcCChHHHHHHHHHHhh------------------------HhcccccchhHHHHHHHHHc-CccHHHHHHHHHHHHccc
Q ss_pred CC----ChHHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhccchhhHHHHHHhccHHHHhccCCcHHHHHHHH
Q 000331 749 NS----NQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAGTL 824 (1652)
Q Consensus 749 ~~----~~~lr~~Avd~L~~Li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~dIr~~iL 824 (1652)
++ +..+.-=|+..|+.++. .....+-........ .++..|... -...+.-|--.|+
T Consensus 263 ~~~~~~~~~~lRGAv~~l~~ll~------------------~~~~~~~~~l~~~~~-~vl~sl~~a-l~~~~~~v~~eIl 322 (464)
T PF11864_consen 263 DPQNKRDINVLRGAVFFLRMLLW------------------GSGEQGYPSLPFSPS-SVLPSLLNA-LKSNSPRVDYEIL 322 (464)
T ss_pred CccccccHHHHhhHHHHHHHHHh------------------ccccCCcceecccHH-HHHHHHHHH-HhCCCCeehHHHH
Q ss_pred HHHHHHH-HhcCCcc-cCChHHHHHHHhhhhcccchhHHHHHHHHHHHHHhccCCCCChhh------------HHHHHHH
Q 000331 825 KILLHVL-ERCGEKL-HYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDC------------IHECVDV 890 (1652)
Q Consensus 825 ~~L~~iL-~~~g~~L-~sgW~~If~IL~~v~~~~~~~lv~~aF~~L~lI~~dfl~~Lp~~~------------~~~lV~~ 890 (1652)
..+..++ .+++..+ ...|..+++|+.. +-+-+...+... +..+++.
T Consensus 323 ~~i~~ll~~~~~~~l~~~~W~~~~~i~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 382 (464)
T PF11864_consen 323 LLINRLLDGKYGRELSEEDWDIILDIIEE--------------------IFDKIQPFDSWYSNSSSLDQLSSNLHSLLSS 382 (464)
T ss_pred HHHHHHHhHhhhhhhcccCchHHHHHHHH--------------------HHhhccccccccccccchHHHHHHHHHHHHH
Q ss_pred HHHHHccCCCcchhHHHHHHHHHHHHHHHcccCCCchhhhhhhhcccCCCccccCcchhhhhhhccccccCCCCCcchhh
Q 000331 891 TGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRD 970 (1652)
Q Consensus 891 L~~F~~q~~dlNISLtAi~llW~isD~L~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~ 970 (1652)
+.+--.+.....=--..+.+|..+.+++.......-.-.++ .........|.
T Consensus 383 ie~L~~~~~~~g~~~~~~~f~~~~~~~lp~s~~~~vl~~~~----------------------------~~~~Ps~~~W~ 434 (464)
T PF11864_consen 383 IESLYEQHDFNGPKDKLFNFFERVHSYLPDSSALLVLFYEE----------------------------RSCSPSNPDWL 434 (464)
T ss_pred HHHHHhCCCcCccHHHHHHHHHHHhccCCHHHHHHHHHHHh----------------------------cccCCCChHHH
Q ss_pred hhHHHHHHHHHHhccCCcHHHHHHHHHHHHHH
Q 000331 971 KLLFAVFSLLKKLGADERPEVRNSAIRTLFQT 1002 (1652)
Q Consensus 971 ~LW~~LL~~L~~L~~D~R~EVRn~AIqTLfri 1002 (1652)
.--.-++.++- ..+.|++||-.|++++-+|
T Consensus 435 ~n~~~ll~~F~--~~~~~~~vRi~aL~~l~e~ 464 (464)
T PF11864_consen 435 DNLQKLLDRFY--NRDRRSEVRIKALDVLEEI 464 (464)
T ss_pred HHHHHHHHHHh--CCCCCchHHHHHHHHHhhC
No 21
>PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ]. The 3D structure of the domain displays several alpha-helices []. It was found to be associated with other domains involved in guanine nucleotide exchange (e.g., CDC25, Dbl) in mammalian factors [].; GO: 0005086 ARF guanyl-nucleotide exchange factor activity, 0032012 regulation of ARF protein signal transduction, 0005622 intracellular; PDB: 3SWV_A 3L8N_A 2R09_A 2R0D_B 1RE0_B 3LTL_A 1KU1_A 1XSZ_A 1XT0_B 1R8Q_E ....
Probab=69.35 E-value=3.4 Score=46.15 Aligned_cols=33 Identities=12% Similarity=0.290 Sum_probs=26.6
Q ss_pred ccCCchhhHHHHHHHHHHH--------------------HHHHHHhccccccc
Q 000331 438 VLVASEAHSITLAIEGLLG--------------------VVFTVATLTDEAVD 470 (1652)
Q Consensus 438 ~ll~~Ea~~I~~~~e~~a~--------------------~i~sv~~L~~~~~~ 470 (1652)
+.+|||+|.|+|+++.|++ ++|+++||+++..|
T Consensus 96 f~LpgE~q~idril~~Fs~~y~~~Np~~~~~~~~d~v~~l~~slimLnTdlHn 148 (190)
T PF01369_consen 96 FRLPGESQQIDRILEAFSERYYECNPNSTPFKSPDTVYILAYSLIMLNTDLHN 148 (190)
T ss_dssp S-BTSSHHHHHHHHHHHHHHHHHHTTTGCSSSSHHHHHHHHHHHHHHHHHHH-
T ss_pred eeeccchHHHHHHHHHHHHHHHHhCCcccccccHhHHHHHHHHHHHHhHHHHh
Confidence 3489999999999999986 45789999988543
No 22
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=68.96 E-value=4.1 Score=45.41 Aligned_cols=32 Identities=16% Similarity=0.319 Sum_probs=26.7
Q ss_pred cCCchhhHHHHHHHHHHH--------------------HHHHHHhccccccc
Q 000331 439 LVASEAHSITLAIEGLLG--------------------VVFTVATLTDEAVD 470 (1652)
Q Consensus 439 ll~~Ea~~I~~~~e~~a~--------------------~i~sv~~L~~~~~~ 470 (1652)
.+|||+|.|+|++|.|+. ++|+++||+++-.|
T Consensus 94 ~lpgE~q~Idrile~Fs~~y~~~N~~~~~~~~~d~~y~l~~s~lmLnTdlhn 145 (187)
T smart00222 94 RLPGEAQKIDRLLEAFSSRYCECNPSVFSKLNADAAYTLAYSLIMLNTDLHN 145 (187)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHCCCccCCCChhHHHHHHHHHHHHhHHhcC
Confidence 489999999999999996 35788999887543
No 23
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.37 E-value=1.1e+02 Score=39.72 Aligned_cols=157 Identities=15% Similarity=0.180 Sum_probs=103.9
Q ss_pred HHHHHHHHHhhHHhhcCCCCCCCCCCCCCCCCcchhHHHHHHHHHHhhcc--chhhHHHHHHHHHHHhcCCChHHHHHHH
Q 000331 682 KSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSISFSVERMISILVNNLHR--VEPLWDQVVGHFLELADNSNQHLRNIAL 759 (1652)
Q Consensus 682 ~~fv~ALc~lS~e~l~~~~~~~~~~~~~~~~~~~F~L~kL~ev~~~N~~R--~~~iW~~l~~hli~v~~~~~~~lr~~Av 759 (1652)
-+++.+||++-..+ .. +..++ ..=+|+|+.|=.-.-+++ .+.--+.+...|++...|+++.+|..|+
T Consensus 127 pelLp~L~~~L~s~----d~------n~~Eg-A~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~ 195 (885)
T KOG2023|consen 127 PELLPQLCELLDSP----DY------NTCEG-AFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAV 195 (885)
T ss_pred hhHHHHHHHHhcCC----cc------cccch-hHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHH
Confidence 56777787765432 10 00122 234888888855444544 2455668888899999999999999999
Q ss_pred HHHHHHHHHHhccccccccccccCCCChhhhhccchhhHHHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCccc
Q 000331 760 DALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLH 839 (1652)
Q Consensus 760 d~L~~Li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~dIr~~iL~~L~~iL~~~g~~L~ 839 (1652)
..++|.+.. .. ......+. .|+.-+-.+ .+..+.+||+.+=..+-.+++-+-+.+.
T Consensus 196 ~cvNq~i~~--~~--------------------qal~~~iD-~Fle~lFal-anD~~~eVRk~vC~alv~Llevr~dkl~ 251 (885)
T KOG2023|consen 196 GCVNQFIII--QT--------------------QALYVHID-KFLEILFAL-ANDEDPEVRKNVCRALVFLLEVRPDKLV 251 (885)
T ss_pred hhhhheeec--Cc--------------------HHHHHHHH-HHHHHHHHH-ccCCCHHHHHHHHHHHHHHHHhcHHhcc
Confidence 999997651 00 01111222 133333334 4677889999999999999999999998
Q ss_pred CChHHHHHHHhhhhcccchhHHHHHHHHHHHHHh
Q 000331 840 YSWPSILELLRSVADASEKDLITLGFQSLRFIMN 873 (1652)
Q Consensus 840 sgW~~If~IL~~v~~~~~~~lv~~aF~~L~lI~~ 873 (1652)
..-+.|.+-+-....+.++++.-.|++-.--++.
T Consensus 252 phl~~IveyML~~tqd~dE~VALEACEFwla~ae 285 (885)
T KOG2023|consen 252 PHLDNIVEYMLQRTQDVDENVALEACEFWLALAE 285 (885)
T ss_pred cchHHHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence 8888887665555555666666666666655554
No 24
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=66.76 E-value=78 Score=37.33 Aligned_cols=75 Identities=19% Similarity=0.296 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCccc-CChHHHHHHHhhhhcccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHHHHHHH
Q 000331 817 TDVRAGTLKILLHVLERCGEKLH-YSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAY 894 (1652)
Q Consensus 817 ~dIr~~iL~~L~~iL~~~g~~L~-sgW~~If~IL~~v~~~~~~~lv~~aF~~L~lI~~dfl~~Lp~~~~~~lV~~L~~F 894 (1652)
...|..+++.+..+++++.+.++ .|=..|..++..+.++++|.-+-.+|+.++.|+..|- + .+...++.|++..|
T Consensus 96 q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~-~~~~e~lFd~~~cY 171 (262)
T PF14500_consen 96 QSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--I-SEFAEDLFDVFSCY 171 (262)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--c-chhHHHHHHHhhhe
Confidence 37799999999999999887774 4556777999999888999999999999999998875 2 44566677766665
No 25
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=66.27 E-value=98 Score=35.23 Aligned_cols=104 Identities=13% Similarity=0.139 Sum_probs=67.5
Q ss_pred hHHhHHHHHHHHHHcCcccccCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCccHHHHHHHHHHHHHHHHHhhhHhHH
Q 000331 254 QRTFVLDILEFILSNHVSLFRMLVSYEQVLRHQICSLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITEC 333 (1652)
Q Consensus 254 ~k~~~LELlesvL~n~~~~F~~~p~l~~llr~~lc~lLi~~lssn~~~~~~~~~~~F~~~~lRi~~~Li~~~~~~L~~E~ 333 (1652)
.|.=+|+-|..++..+ .--...+.+...+| .+...+.+.+++. +.......+.++..+...+...+...+
T Consensus 23 ~r~~al~~L~~l~~~~-~~~~~~~~~~~~l~-~~~~~i~~~l~d~--------Rs~v~~~A~~~l~~l~~~l~~~~~~~~ 92 (228)
T PF12348_consen 23 ERVEALQKLRSLIKGN-APEDFPPDFVECLR-QLLDAIIKQLSDL--------RSKVSKTACQLLSDLARQLGSHFEPYA 92 (228)
T ss_dssp HHHHHHHHHHHHHHH--B-----HHHHHHHH----HHHHH-S-HH-----------HHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHHHHHHHHHHHcC-CccccHHHHHHHHH-HhHHHHHHHHhhh--------HHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 5777888899998888 22234577888888 4555555665541 333334678888999999999999999
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHHhhcChH
Q 000331 334 EVFLSMLVKVTFLDLPLWHRILVLEILRGFCVEAR 368 (1652)
Q Consensus 334 EvfLs~Li~~l~~~~~~w~r~L~LEvl~~l~~dp~ 368 (1652)
+.++..|++.+... ...-|.-+.++|..++..-.
T Consensus 93 ~~~l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~ 126 (228)
T PF12348_consen 93 DILLPPLLKKLGDS-KKFIREAANNALDAIIESCS 126 (228)
T ss_dssp HHHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHccc-cHHHHHHHHHHHHHHHHHCC
Confidence 99999999988543 35677888888887765444
No 26
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.52 E-value=68 Score=41.72 Aligned_cols=110 Identities=13% Similarity=0.151 Sum_probs=77.1
Q ss_pred CCcHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHhHHHhhhhhhccCCcccccccccCcCCCccchhhcccccch
Q 000331 986 DERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNT 1065 (1652)
Q Consensus 986 D~R~EVRn~AIqTLfril~s~g~~ls~~~W~~~~~~VLFPLL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ihhsr~t 1065 (1652)
-+..+||..|...||..+---|..+..+.-+.++.+-.. .+.++.+. +
T Consensus 185 a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~-~l~~LL~d------------~------------------- 232 (1005)
T KOG1949|consen 185 ARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFE-ELYSLLED------------P------------------- 232 (1005)
T ss_pred cCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHH-HHHHHhcC------------C-------------------
Confidence 366899999999999999888888888888888766543 44444321 1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHHHhhc
Q 000331 1066 AQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSI-LNGSKEVSLAAINCLQTTVLSHS 1136 (1652)
Q Consensus 1066 ~~k~W~ET~vlal~gl~klf~~~~~~L~~l~~F~~~W~~lL~~l~~~~-~~~~~els~a~~~~L~~lL~~~~ 1136 (1652)
.-.-+..|..|++|+|..|+..+-. ..-..+|.++..-+ .....+|-.++++++..++-...
T Consensus 233 ----~p~VRS~a~~gv~k~~s~fWe~iP~-----~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~ 295 (1005)
T KOG1949|consen 233 ----YPMVRSTAILGVCKITSKFWEMIPP-----TILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPL 295 (1005)
T ss_pred ----CchHHHHHHHHHHHHHHHHHHHcCH-----HHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCcc
Confidence 1134557889999999999987642 24455666655444 33446888999999988775443
No 27
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.93 E-value=6.4e+02 Score=34.01 Aligned_cols=134 Identities=19% Similarity=0.254 Sum_probs=90.3
Q ss_pred cChhH-HHHHHHHHHHHhCCCCCCcccCchhHHHHHHHHhcCCCchhHHHHHHHHHHHHhcCC--CC--cchHHHHHHHH
Q 000331 21 RYPAV-KDGAEHAILKLRSLSSPSELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDA--VA--PSALKEIFSML 95 (1652)
Q Consensus 21 k~~~l-k~A~e~sl~~Lk~~~~~~~l~~~~~~l~PfllaC~skn~kl~~iaL~~lqkLi~~~~--i~--~~~l~~Il~~l 95 (1652)
++|-| |.|+-.+...+|..++ ..+.|+.+|.-....|+.-+...++.-++.++.-+- +. .+.++..+..|
T Consensus 154 ~~~~irKKA~Lca~r~irK~P~-----l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iL 228 (866)
T KOG1062|consen 154 RDPYIRKKAALCAVRFIRKVPD-----LVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKIL 228 (866)
T ss_pred CCHHHHHHHHHHHHHHHHcCch-----HHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 45655 6777788888777544 235688888877778888888888888888887642 21 12344444444
Q ss_pred Hcc-----------cCCCCchHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHhhhccccCChHHHHHHHHHHHHHHHHH
Q 000331 96 KNH-----------ADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQALGICLRLLENNRSSDSVRNTAAATFRQAVAL 164 (1652)
Q Consensus 96 ~~~-----------~~~~~e~VqLkILQ~L~~l~~s~~~~~~g~~L~~~l~~C~~L~~~sk~~~~v~~TA~ATL~Qlv~~ 164 (1652)
.+. ....|-=.|.|||+.|..+-++.. -.-|.|.++|.-.++=..+||| .--|-|-+-|.+
T Consensus 229 k~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~--daSd~M~DiLaqvatntdsskN------~GnAILYE~V~T 300 (866)
T KOG1062|consen 229 KQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDA--DASDLMNDILAQVATNTDSSKN------AGNAILYECVRT 300 (866)
T ss_pred HHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCc--cHHHHHHHHHHHHHhccccccc------chhHHHHHHHHH
Confidence 432 345677789999999999998842 2357777777665554444444 455677777777
Q ss_pred HHH
Q 000331 165 IFD 167 (1652)
Q Consensus 165 VF~ 167 (1652)
||+
T Consensus 301 I~~ 303 (866)
T KOG1062|consen 301 IMD 303 (866)
T ss_pred HHh
Confidence 774
No 28
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=56.81 E-value=1.4e+02 Score=36.34 Aligned_cols=116 Identities=16% Similarity=0.183 Sum_probs=83.7
Q ss_pred hhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhccchhhHHHHHHhccHHHHhc
Q 000331 733 EPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYF 812 (1652)
Q Consensus 733 ~~iW~~l~~hli~v~~~~~~~lr~~Avd~L~~Li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~ 812 (1652)
..+|.++.. ...|++..+|.+|++++...+..-. ..|...+|.-+++.+..+..
T Consensus 123 ~ggl~~ll~----~l~~~~~~lR~~Aa~Vigt~~qNNP----------------------~~Qe~v~E~~~L~~Ll~~ls 176 (342)
T KOG2160|consen 123 LGGLVPLLG----YLENSDAELRELAARVIGTAVQNNP----------------------KSQEQVIELGALSKLLKILS 176 (342)
T ss_pred ccCHHHHHH----HhcCCcHHHHHHHHHHHHHHHhcCH----------------------HHHHHHHHcccHHHHHHHHc
Confidence 567988888 3467899999999999998654211 12334455556777777777
Q ss_pred cCCcHHHHHHHHHHHHHHHHhcCCcc-----cCChHHHHHHHhhhhcccchhHHHHHHHHHHHHHhccC
Q 000331 813 STQSTDVRAGTLKILLHVLERCGEKL-----HYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGL 876 (1652)
Q Consensus 813 ~~~~~dIr~~iL~~L~~iL~~~g~~L-----~sgW~~If~IL~~v~~~~~~~lv~~aF~~L~lI~~dfl 876 (1652)
.+...++|..+|-.+..+|.++-.-. -.||..+..++..-.. +..+.+.++.-+..+.....
T Consensus 177 ~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~--~~~lkrK~~~Ll~~Ll~~~~ 243 (342)
T KOG2160|consen 177 SDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNT--SVKLKRKALFLLSLLLQEDK 243 (342)
T ss_pred cCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCc--chHHHHHHHHHHHHHHHhhh
Confidence 78888999999999999998754322 2799999998876422 45677778777777665443
No 29
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.71 E-value=69 Score=41.50 Aligned_cols=162 Identities=15% Similarity=0.211 Sum_probs=105.0
Q ss_pred hhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhccchhhHHHHHHhccHHHHhc
Q 000331 733 EPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYF 812 (1652)
Q Consensus 733 ~~iW~~l~~hli~v~~~~~~~lr~~Avd~L~~Li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~ 812 (1652)
-.-|+.+...+.++..+++...-+-|..+|..+....- ++- + .+...+.+. .++-.|..++
T Consensus 123 ~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa---~~l-------------d-s~~~~rpl~-~mipkfl~f~- 183 (885)
T KOG2023|consen 123 LQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSA---QFL-------------D-SDVLTRPLN-IMIPKFLQFF- 183 (885)
T ss_pred cccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhH---HHH-------------h-hhcccCchH-HhHHHHHHHH-
Confidence 34589999999999998887888889999988654211 000 0 012234454 3333444554
Q ss_pred cCCcHHHHHHHHHHHHHHHHhcCCcccCChHHHHHHHhhhhcccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHHHHH
Q 000331 813 STQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTG 892 (1652)
Q Consensus 813 ~~~~~dIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~L~lI~~dfl~~Lp~~~~~~lV~~L~ 892 (1652)
.++++.||...+.|+.+++-...+.+--.=+..++.+-..+.+.++.+=+.-+..|-++.+=....+-+ .+...|+-.
T Consensus 184 ~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~p-hl~~IveyM- 261 (885)
T KOG2023|consen 184 KHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVP-HLDNIVEYM- 261 (885)
T ss_pred hCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhccc-chHHHHHHH-
Confidence 456899999999999999887777776566666666666666666666667777777766433333322 233343322
Q ss_pred HHHccCCCcchhHHHHHHHHHHH
Q 000331 893 AYSSQKTELNISLTAVGLLWTTT 915 (1652)
Q Consensus 893 ~F~~q~~dlNISLtAi~llW~is 915 (1652)
-...|+.|.|++|.|..+.-.++
T Consensus 262 L~~tqd~dE~VALEACEFwla~a 284 (885)
T KOG2023|consen 262 LQRTQDVDENVALEACEFWLALA 284 (885)
T ss_pred HHHccCcchhHHHHHHHHHHHHh
Confidence 23467889999999998754443
No 30
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=51.00 E-value=1.8e+02 Score=32.02 Aligned_cols=91 Identities=16% Similarity=0.246 Sum_probs=59.6
Q ss_pred cchhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhccchhhHHHHHHhccHHHH
Q 000331 731 RVEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVL 810 (1652)
Q Consensus 731 R~~~iW~~l~~hli~v~~~~~~~lr~~Avd~L~~Li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L 810 (1652)
|...+=+....++.....++++.+|..|+-.|.+|+..-+-+ .+.+ ++.-+..+
T Consensus 18 r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik-------------------~k~~-------l~~~~l~~ 71 (178)
T PF12717_consen 18 RYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK-------------------VKGQ-------LFSRILKL 71 (178)
T ss_pred hCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee-------------------ehhh-------hhHHHHHH
Confidence 556666777888888889999999999999999998632110 0011 11111112
Q ss_pred hccCCcHHHHHHHHHHHHHHHHh-cCCcccCChHHHHHHHhh
Q 000331 811 YFSTQSTDVRAGTLKILLHVLER-CGEKLHYSWPSILELLRS 851 (1652)
Q Consensus 811 ~~~~~~~dIr~~iL~~L~~iL~~-~g~~L~sgW~~If~IL~~ 851 (1652)
-...+.+||.....++.++... .++.+ +..+-+++..
T Consensus 72 -l~D~~~~Ir~~A~~~~~e~~~~~~~~~i---~~~~~e~i~~ 109 (178)
T PF12717_consen 72 -LVDENPEIRSLARSFFSELLKKRNPNII---YNNFPELISS 109 (178)
T ss_pred -HcCCCHHHHHHHHHHHHHHHHhccchHH---HHHHHHHHHH
Confidence 1566789999999999999987 44434 3333344443
No 31
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=48.23 E-value=37 Score=25.92 Aligned_cols=29 Identities=17% Similarity=0.292 Sum_probs=24.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 000331 739 VVGHFLELADNSNQHLRNIALDALDQSIC 767 (1652)
Q Consensus 739 l~~hli~v~~~~~~~lr~~Avd~L~~Li~ 767 (1652)
+..+|.+..++++..+|..|+.+|.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 35678889999999999999999998764
No 32
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=45.86 E-value=7.8e+02 Score=33.95 Aligned_cols=220 Identities=13% Similarity=0.104 Sum_probs=122.2
Q ss_pred hHHHHHHHHHHhhccCCChHHHHHHHHHHHHhhHHhhcCCCCCCCCC----CCCCCCC---cchhHHHHHH-HHHHhhcc
Q 000331 660 NVLSSLNSQLFESSALMHISAVKSLLSALHQLSHQCMIGTSSSFGPT----SSQKIGS---ISFSVERMIS-ILVNNLHR 731 (1652)
Q Consensus 660 ~il~si~~~LFesS~~L~~~sl~~fv~ALc~lS~e~l~~~~~~~~~~----~~~~~~~---~~F~L~kL~e-v~~~N~~R 731 (1652)
.++.++..++=+.|.. ....-..++..|..++...+.......-|+ -+++... +.-.|.++.. ++..+-.+
T Consensus 435 ~iVkai~~qlr~ks~k-t~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~ 513 (1233)
T KOG1824|consen 435 LIVKAIQKQLREKSVK-TRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEV 513 (1233)
T ss_pred HHHHHHHHHHhhcccc-chhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhh
Confidence 4566665555555544 444445566777777766543332211111 0111000 1112222222 12233334
Q ss_pred chhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhccchhhHHHHHHhccHHHHh
Q 000331 732 VEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLY 811 (1652)
Q Consensus 732 ~~~iW~~l~~hli~v~~~~~~~lr~~Avd~L~~Li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~ 811 (1652)
.+..-..++.-......++-..+..-|.-+.-+++. .+.+- ..+..... ...+..++-..+..+.
T Consensus 514 fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvk-virpl------~~~~~~d~--------~~~v~~m~~~tl~rL~ 578 (1233)
T KOG1824|consen 514 FHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVK-VIRPL------QPPSSFDA--------SPYVKTMYDCTLQRLK 578 (1233)
T ss_pred cccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHH-Hhccc------CCCccCCC--------ChhHHHHHHHHHHHHh
Confidence 555555555555555566666777777777777665 33221 01000000 0112222223444555
Q ss_pred ccCCcHHHHHHHHHHHHHHHHhcCCcccCChHHHHHHHhhhhcccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHHHH
Q 000331 812 FSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVT 891 (1652)
Q Consensus 812 ~~~~~~dIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~L~lI~~dfl~~Lp~~~~~~lV~~L 891 (1652)
....+-|||+..+.|+.+++-.+|+.++..-+.++.|+----+ ++..--.|+..+.+|...-+..--...+...+.-+
T Consensus 579 a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l 656 (1233)
T KOG1824|consen 579 ATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLG--NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPEL 656 (1233)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh--chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHH
Confidence 6677889999999999999999999999999999888854322 33344468999999986555421133567777778
Q ss_pred HHHHcc
Q 000331 892 GAYSSQ 897 (1652)
Q Consensus 892 ~~F~~q 897 (1652)
..|++-
T Consensus 657 ~~flrK 662 (1233)
T KOG1824|consen 657 ASFLRK 662 (1233)
T ss_pred HHHHHH
Confidence 888764
No 33
>PF08427 DUF1741: Domain of unknown function (DUF1741); InterPro: IPR013636 This is a eukaryotic domain of unknown function.
Probab=45.57 E-value=4.8e+02 Score=30.38 Aligned_cols=68 Identities=26% Similarity=0.344 Sum_probs=49.3
Q ss_pred chhhhhHHHHHHHHHHhccCC-----cHHHHHHHHHH--HHHHHHhccCCC--CHHHHHHHHHHhHH--hHHHhhhhhh
Q 000331 967 VDRDKLLFAVFSLLKKLGADE-----RPEVRNSAIRT--LFQTLGSHGQKL--SESMWEDCLWNYVF--PMLDCASHMA 1034 (1652)
Q Consensus 967 ~~~~~LW~~LL~~L~~L~~D~-----R~EVRn~AIqT--Lfril~s~g~~l--s~~~W~~~~~~VLF--PLL~~l~~~~ 1034 (1652)
-.|..||-.|+..+.=+++.. .+.|-.-+.+. +|..+.+||+.| +|+..+..|.+++- +.|+++....
T Consensus 57 Y~W~eLW~aLlsLl~Fl~~~~~~l~~~~~i~~L~~~vv~l~n~~is~GDtFLPsp~~yDdL~YelVr~~~v~~~~~~~~ 135 (237)
T PF08427_consen 57 YHWSELWRALLSLLRFLTTYESDLKDSPDIFQLAEQVVNLFNFFISYGDTFLPSPASYDDLFYELVRSGQVFDKFRDMY 135 (237)
T ss_pred ccHHHHHHHHHHHHHHHHhchhhhhcccChHHHHHHHHHHHHHHHHhccccCCChHHHHhHHHHhHhchHHHHHHHHHH
Confidence 359999999988887776432 34444444443 477777899876 78899999999986 7888886543
No 34
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=44.60 E-value=59 Score=32.22 Aligned_cols=73 Identities=15% Similarity=0.117 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhccchhhHHHHHHhccHHHHhccCCcHH
Q 000331 739 VVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTD 818 (1652)
Q Consensus 739 l~~hli~v~~~~~~~lr~~Avd~L~~Li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~d 818 (1652)
+..++++...+++..+|..|+.+|..++... . + . .....+..++..+..++. +.+.+
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~--~---------------~-~----~~~~~~~~~i~~l~~~l~-~~~~~ 64 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGN--N---------------D-N----IQAVVEAGGLPALVQLLK-SEDEE 64 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCC--H---------------H-H----HHHHHHCCChHHHHHHHh-CCCHH
Confidence 4566777788888999999999999876521 0 0 0 001111123444455543 35789
Q ss_pred HHHHHHHHHHHHHHhc
Q 000331 819 VRAGTLKILLHVLERC 834 (1652)
Q Consensus 819 Ir~~iL~~L~~iL~~~ 834 (1652)
+++..+.+|.++.+..
T Consensus 65 v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 65 VVKAALWALRNLAAGP 80 (120)
T ss_pred HHHHHHHHHHHHccCc
Confidence 9999999999997754
No 35
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.34 E-value=9.7e+02 Score=32.44 Aligned_cols=45 Identities=18% Similarity=0.326 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHccCCCcchhHHHHHHH
Q 000331 863 LGFQSLRFIMNDGLSSIPTDCIHECVDVTGAYSSQKTELNISLTAVGLL 911 (1652)
Q Consensus 863 ~aF~~L~lI~~dfl~~Lp~~~~~~lV~~L~~F~~q~~dlNISLtAi~ll 911 (1652)
.=|+|++-|++=... ..-....|++|++|..+. |-||-.-|+..+
T Consensus 293 ILYE~V~TI~~I~~~---~~LrvlainiLgkFL~n~-d~NirYvaLn~L 337 (866)
T KOG1062|consen 293 ILYECVRTIMDIRSN---SGLRVLAINILGKFLLNR-DNNIRYVALNML 337 (866)
T ss_pred HHHHHHHHHHhccCC---chHHHHHHHHHHHHhcCC-ccceeeeehhhH
Confidence 457888888742211 223567889999998886 888766665554
No 36
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=43.33 E-value=2.2e+02 Score=30.60 Aligned_cols=49 Identities=20% Similarity=0.394 Sum_probs=37.1
Q ss_pred HhccCCcHHHHHHHHHHHHHHHHhcc--CCCCHHHHHHHHHHhHHhHHHhhh
Q 000331 982 KLGADERPEVRNSAIRTLFQTLGSHG--QKLSESMWEDCLWNYVFPMLDCAS 1031 (1652)
Q Consensus 982 ~L~~D~R~EVRn~AIqTLfril~s~g--~~ls~~~W~~~~~~VLFPLL~~l~ 1031 (1652)
......+.-=|+.|++.|-+++.... ..++...|+.+| +.||-.++.-.
T Consensus 11 ~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~if-eaL~~~i~~Ek 61 (155)
T PF11640_consen 11 RLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIF-EALFRCIEKEK 61 (155)
T ss_pred HHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHH-HHHHHHHHHHH
Confidence 33345667789999999999998654 889999998877 56676666544
No 37
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.53 E-value=7.7e+02 Score=34.78 Aligned_cols=201 Identities=15% Similarity=0.118 Sum_probs=0.0
Q ss_pred cCCChHHHHHHHHHHHHHHHH-----HhccccccccccccCCCChhhhhccchhhHHHHHHhccHHHHhccCCcHHHHHH
Q 000331 748 DNSNQHLRNIALDALDQSICA-----VLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAG 822 (1652)
Q Consensus 748 ~~~~~~lr~~Avd~L~~Li~~-----~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~dIr~~ 822 (1652)
++.+..++.+|-+.|..++.. +. .......++.++.++... ..-++..
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~----------------------~q~i~~I~n~L~ds~qs~-----~~~~~~~ 716 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGEGLV----------------------EQRIDDIFNSLLDSFQSS-----SSPAQAS 716 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchhhHH----------------------HHHHHHHHHHHHHHHhcc-----chHHHHH
Q ss_pred HHHHHHHHHHhcC-CcccCChHHHHHHHhhhhcccchhHHHHHHHHHHHHH--hccCCCCChh---hHHHHHHHHHHHHc
Q 000331 823 TLKILLHVLERCG-EKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIM--NDGLSSIPTD---CIHECVDVTGAYSS 896 (1652)
Q Consensus 823 iL~~L~~iL~~~g-~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~L~lI~--~dfl~~Lp~~---~~~~lV~~L~~F~~ 896 (1652)
-+.||+.|++.++ +....==+.|-++|-+. .+.+...=+.+|+||..|+ .-++...... .+...|..++.=--
T Consensus 717 rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~ 795 (1176)
T KOG1248|consen 717 RLKCLKRLLKLLSAEHCDLIPKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLV 795 (1176)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhc
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHcccCCCchhhhhhhhcccCCCccccCcchhhhhhhccccccCCCCCcchhhhhHHHH
Q 000331 897 QKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLLFAV 976 (1652)
Q Consensus 897 q~~dlNISLtAi~llW~isD~L~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~LW~~L 976 (1652)
.+...+++-+ |-.+-.+.--...... +.....+
T Consensus 796 gd~~~~~as~-Ivai~~il~e~~~~ld----------------------------------------------~~~l~~l 828 (1176)
T KOG1248|consen 796 GDSTRVVASD-IVAITHILQEFKNILD----------------------------------------------DETLEKL 828 (1176)
T ss_pred ccHHHHHHHH-HHHHHHHHHHHhcccc----------------------------------------------HHHHHHH
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhH
Q 000331 977 FSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYV 1023 (1652)
Q Consensus 977 L~~L~~L~~D~R~EVRn~AIqTLfril~s~g~~ls~~~W~~~~~~VL 1023 (1652)
+.-+.......++|||.+||..+=..+.......-...-+.++-.++
T Consensus 829 i~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll 875 (1176)
T KOG1248|consen 829 ISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLL 875 (1176)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHH
No 38
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.78 E-value=2.5e+02 Score=36.11 Aligned_cols=212 Identities=15% Similarity=0.193 Sum_probs=123.3
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhccchhhHHHHHHhccHHHHhccCCcHHHHH
Q 000331 742 HFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRA 821 (1652)
Q Consensus 742 hli~v~~~~~~~lr~~Avd~L~~Li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~dIr~ 821 (1652)
.|+.+..+++..++++|+=+|-.++... ..- ....+..-.+.|+..++..+...-+++
T Consensus 156 ~fi~Ll~s~~~~v~eQavWALgNIagds------------------~~~----Rd~vl~~g~l~pLl~~l~~~~~~~~lR 213 (514)
T KOG0166|consen 156 IFIQLLSSPSADVREQAVWALGNIAGDS------------------PDC----RDYVLSCGALDPLLRLLNKSDKLSMLR 213 (514)
T ss_pred HHHHHhcCCcHHHHHHHHHHHhccccCC------------------hHH----HHHHHhhcchHHHHHHhccccchHHHH
Confidence 4889999999999999999999876421 111 123455556778887765554457888
Q ss_pred HHHHHHHHHHHhcCCcccCChHHHHHHHhhhhc---ccchhHHHHHHHHHHHHHhccCCC----CChhhHHHHHHHHHHH
Q 000331 822 GTLKILLHVLERCGEKLHYSWPSILELLRSVAD---ASEKDLITLGFQSLRFIMNDGLSS----IPTDCIHECVDVTGAY 894 (1652)
Q Consensus 822 ~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~---~~~~~lv~~aF~~L~lI~~dfl~~----Lp~~~~~~lV~~L~~F 894 (1652)
.+..+|.++-.... =.--|..|=.+|..... ..++.+..-+.-.+..+.+.--.. +.......+|++|..+
T Consensus 214 n~tW~LsNlcrgk~--P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~ 291 (514)
T KOG0166|consen 214 NATWTLSNLCRGKN--PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHS 291 (514)
T ss_pred HHHHHHHHHHcCCC--CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCC
Confidence 89999998876432 33456666555544432 345566666666666665432221 1234455666666655
Q ss_pred HccCCCcchhHHHHHHHHHHHHHHHcccCCCchhhhhhhhcccCCCccccCcchhhhhhhccccccCCCCCcchhhhhHH
Q 000331 895 SSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLLF 974 (1652)
Q Consensus 895 ~~q~~dlNISLtAi~llW~isD~L~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~LW~ 974 (1652)
- .++-.-|+..+-+| .. ++. .++. .-.+.
T Consensus 292 ~-----~~v~~PaLRaiGNI----vt----G~d-----------------------~QTq------------~vi~~--- 320 (514)
T KOG0166|consen 292 S-----PKVVTPALRAIGNI----VT----GSD-----------------------EQTQ------------VVINS--- 320 (514)
T ss_pred C-----cccccHHHhhccce----ee----ccH-----------------------HHHH------------HHHhc---
Confidence 2 22222222221111 11 100 0110 00111
Q ss_pred HHHHHHHHhcc-CCcHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHhHHHhhhhh
Q 000331 975 AVFSLLKKLGA-DERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHM 1033 (1652)
Q Consensus 975 ~LL~~L~~L~~-D~R~EVRn~AIqTLfril~s~g~~ls~~~W~~~~~~VLFPLL~~l~~~ 1033 (1652)
..|..|..+-. .+..-+|+.|.=|+-.|-. |. .+.-+.++..-++|.+-++.+.
T Consensus 321 ~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA--G~---~~qiqaVida~l~p~Li~~l~~ 375 (514)
T KOG0166|consen 321 GALPVLSNLLSSSPKESIKKEACWTISNITA--GN---QEQIQAVIDANLIPVLINLLQT 375 (514)
T ss_pred ChHHHHHHHhccCcchhHHHHHHHHHHHhhc--CC---HHHHHHHHHcccHHHHHHHHhc
Confidence 13455566555 4444499999999888876 54 3456788899999999888643
No 39
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.70 E-value=9.7e+02 Score=32.45 Aligned_cols=119 Identities=17% Similarity=0.138 Sum_probs=74.1
Q ss_pred HHHHHHHhccCC-cHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHhHHHhhhhhhccCCcccccccccCcCCCcc
Q 000331 976 VFSLLKKLGADE-RPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKA 1054 (1652)
Q Consensus 976 LL~~L~~L~~D~-R~EVRn~AIqTLfril~s~g~~ls~~~W~~~~~~VLFPLL~~l~~~~~~~~~~~~~~~~~~~~~~~~ 1054 (1652)
++..+.++-.|+ ..-||=.|++||=-.++.. .|+++.....+ +.+|-++-.+.+..
T Consensus 527 ~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~--nF~~dsFlp~l-enlf~~lfkll~~~-------------------- 583 (978)
T KOG1993|consen 527 LYCAFLNLLQDQNDLVVRLTTARTLKLVVDDW--NFSEDSFLPYL-ENLFVLLFKLLKAV-------------------- 583 (978)
T ss_pred HHHHHHHhcCccccceeehHHHHHHHHhhhhc--cCChhhhhhhH-HHHHHHHHHHHHHH--------------------
Confidence 455566777886 8999999999987777743 35555554443 33443333332210
Q ss_pred chhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHHH
Q 000331 1055 VHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILN--GSKEVSLAAINCLQTTV 1132 (1652)
Q Consensus 1055 ~~~~ihhsr~t~~k~W~ET~vlal~gl~klf~~~~~~L~~l~~F~~~W~~lL~~l~~~~~~--~~~els~a~~~~L~~lL 1132 (1652)
+=-||++.+|+.++.+..+-=..+.. .=..+++|+..+... +..-+..|.+..|.+++
T Consensus 584 --------------~e~Dtk~~VL~~ls~lI~r~~e~I~P------~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV 643 (978)
T KOG1993|consen 584 --------------EECDTKTSVLNLLSTLIERVSEHIAP------YASTIVQYLPLLWEESEEEPLLRCALLATLRNLV 643 (978)
T ss_pred --------------hhhhhHHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHH
Confidence 01278888888888887665554432 223466666666543 22346778888888888
Q ss_pred HhhcC
Q 000331 1133 LSHST 1137 (1652)
Q Consensus 1133 ~~~~~ 1137 (1652)
...+.
T Consensus 644 ~alg~ 648 (978)
T KOG1993|consen 644 NALGA 648 (978)
T ss_pred HHhcc
Confidence 77664
No 40
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=41.69 E-value=4.3e+02 Score=31.63 Aligned_cols=126 Identities=15% Similarity=0.213 Sum_probs=81.3
Q ss_pred HHhhcChhHHHHHHHHHHHHhCCCCCCc---------ccCchhHHHHHHHHhcCCCchhHHHHHHHHHHHHhcCCCCcch
Q 000331 17 EARRRYPAVKDGAEHAILKLRSLSSPSE---------LAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAPSA 87 (1652)
Q Consensus 17 EskRk~~~lk~A~e~sl~~Lk~~~~~~~---------l~~~~~~l~PfllaC~skn~kl~~iaL~~lqkLi~~~~i~~~~ 87 (1652)
-.++-+.+||-.|=+++-.+=....... ......+++-|.-...+.++++-.+|..++-||+-+|.+..
T Consensus 72 ~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~-- 149 (298)
T PF12719_consen 72 ALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD-- 149 (298)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc--
Confidence 3333466777766666544433322211 12346788899988898999999999999999999999876
Q ss_pred HHHHHHHHHcccCCCCchHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHhhhccccCChHHHHHHHHHHHHHHHHHHHH
Q 000331 88 LKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQALGICLRLLENNRSSDSVRNTAAATFRQAVALIFD 167 (1652)
Q Consensus 88 l~~Il~~l~~~~~~~~e~VqLkILQ~L~~l~~s~~~~~~g~~L~~~l~~C~~L~~~sk~~~~v~~TA~ATL~Qlv~~VF~ 167 (1652)
.=++|..|..+.-+|.. -...-|.++|..||..|..++. .. +..+.....-+|.
T Consensus 150 -------------------~~~vL~~Lll~yF~p~t-~~~~~LrQ~L~~Ffp~y~~s~~--~~----Q~~l~~~f~~~l~ 203 (298)
T PF12719_consen 150 -------------------PPKVLSRLLLLYFNPST-EDNQRLRQCLSVFFPVYASSSP--EN----QERLAEAFLPTLR 203 (298)
T ss_pred -------------------HHHHHHHHHHHHcCccc-CCcHHHHHHHHHHHHHHHcCCH--HH----HHHHHHHHHHHHH
Confidence 12455555444444422 2345799999999999875433 22 2445555666666
Q ss_pred hhh
Q 000331 168 HVV 170 (1652)
Q Consensus 168 rv~ 170 (1652)
++.
T Consensus 204 ~~~ 206 (298)
T PF12719_consen 204 TLS 206 (298)
T ss_pred HHH
Confidence 654
No 41
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=40.40 E-value=66 Score=31.12 Aligned_cols=53 Identities=17% Similarity=0.317 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 000331 1072 ETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQT 1130 (1652)
Q Consensus 1072 ET~vlal~gl~klf~~~~~~L~~l~~F~~~W~~lL~~l~~~~~~~~~els~a~~~~L~~ 1130 (1652)
|.+-+.+..+..+...+-+.|.. .|..+++.+......++.++...|+++++.
T Consensus 33 ~vre~il~ci~qil~~~~~~i~S------GW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 33 DVRELILECILQILQSRGENIKS------GWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHh------ccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 78889999999999988887753 699999999999998889999999999875
No 42
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=40.36 E-value=9.2e+02 Score=31.02 Aligned_cols=134 Identities=16% Similarity=0.167 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhccchhhHHHHHHhccHHHHhccCCc
Q 000331 737 DQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQS 816 (1652)
Q Consensus 737 ~~l~~hli~v~~~~~~~lr~~Avd~L~~Li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~ 816 (1652)
..+.+.+.....+.+..++..|+..+..+.. .+ ..++ .+..++..+.. +.+
T Consensus 230 ~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~------------------~~---------~~~~-~~~~~L~~lL~-s~~ 280 (526)
T PF01602_consen 230 NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSP------------------SP---------ELLQ-KAINPLIKLLS-SSD 280 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS------------------SH---------HHHH-HHHHHHHHHHT-SSS
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHhhc------------------ch---------HHHH-hhHHHHHHHhh-ccc
Confidence 4566777777777788888888877775321 00 0122 45567777765 677
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccCChHHHHHHHhhhhcccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHc
Q 000331 817 TDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAYSS 896 (1652)
Q Consensus 817 ~dIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~L~lI~~dfl~~Lp~~~~~~lV~~L~~F~~ 896 (1652)
.++|-.+|+++.++...+...+. ....++..+. .+.+..+.+.+.+.|..+++ .+++..+++.|.+|+.
T Consensus 281 ~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~~l~---~~~d~~Ir~~~l~lL~~l~~-------~~n~~~Il~eL~~~l~ 349 (526)
T PF01602_consen 281 PNVRYIALDSLSQLAQSNPPAVF-NQSLILFFLL---YDDDPSIRKKALDLLYKLAN-------ESNVKEILDELLKYLS 349 (526)
T ss_dssp HHHHHHHHHHHHHHCCHCHHHHG-THHHHHHHHH---CSSSHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH
T ss_pred chhehhHHHHHHHhhcccchhhh-hhhhhhheec---CCCChhHHHHHHHHHhhccc-------ccchhhHHHHHHHHHH
Confidence 89999999999999988745555 4333333333 23456788889999988875 4678889999999985
Q ss_pred cCCCcchhHHHHHH
Q 000331 897 QKTELNISLTAVGL 910 (1652)
Q Consensus 897 q~~dlNISLtAi~l 910 (1652)
...|..+.-.++..
T Consensus 350 ~~~d~~~~~~~i~~ 363 (526)
T PF01602_consen 350 ELSDPDFRRELIKA 363 (526)
T ss_dssp HC--HHHHHHHHHH
T ss_pred hccchhhhhhHHHH
Confidence 44344443333333
No 43
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=37.45 E-value=1.2e+02 Score=33.77 Aligned_cols=89 Identities=10% Similarity=0.237 Sum_probs=69.0
Q ss_pred hhHHHHHHHHhcCCCchhHHHHHHHHHHHHhcCCCCcch-HHHHHHHHHcccCCCCchHHHHHHHHHHHHHcCCCCCCCh
Q 000331 49 EDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAPSA-LKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLHPENE 127 (1652)
Q Consensus 49 ~~~l~PfllaC~skn~kl~~iaL~~lqkLi~~~~i~~~~-l~~Il~~l~~~~~~~~e~VqLkILQ~L~~l~~s~~~~~~g 127 (1652)
..|+..++-.|-+.++++-..|+..|+-.+.+|++.|.. ++.++ ||. ++ .+..+.=+..+.+..+...|...++.
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lI-AL~--ts-~~~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLI-ALE--TS-PNPSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhh-hhh--CC-CChHHHHHHHHHHHHHHHHhHHHHHH
Confidence 468999999999999999999999999999999998864 56555 333 22 34467778888888888887655533
Q ss_pred HHHHHHHHHHhhhcc
Q 000331 128 DNMAQALGICLRLLE 142 (1652)
Q Consensus 128 ~~L~~~l~~C~~L~~ 142 (1652)
...++++.+|..+.
T Consensus 83 -~~~~gi~~af~~~~ 96 (187)
T PF12830_consen 83 -RYSEGIRLAFDYQR 96 (187)
T ss_pred -HHHHHHHHHHHHHH
Confidence 56678888888754
No 44
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=36.03 E-value=1.4e+03 Score=31.79 Aligned_cols=262 Identities=15% Similarity=0.120 Sum_probs=141.9
Q ss_pred cCCcHHHHHHHHHHHHHHHHhcCCccc-CChHHHHHHHhhhhcccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHHHH
Q 000331 813 STQSTDVRAGTLKILLHVLERCGEKLH-YSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVT 891 (1652)
Q Consensus 813 ~~~~~dIr~~iL~~L~~iL~~~g~~L~-sgW~~If~IL~~v~~~~~~~lv~~aF~~L~lI~~dfl~~Lp~~~~~~lV~~L 891 (1652)
.+.+.|+|.+...-|..=||.-.-++. .+-+-+..+|-..-.+.+.++-..|-.|+-.++ +-++.+.+...|+.|
T Consensus 15 tssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lv----sKvke~~le~~ve~L 90 (1233)
T KOG1824|consen 15 TSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLV----SKVKEDQLETIVENL 90 (1233)
T ss_pred cCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHH----hhchHHHHHHHHHHH
Confidence 455678888888888888887655554 455555555555545566778889999999888 457888999999988
Q ss_pred HHHHccCCCcchhHHHHHHHHHHHHHHHcccCC-Cchhh-----hhhhhcccCCCccccCcch------hhhhhhccccc
Q 000331 892 GAYSSQKTELNISLTAVGLLWTTTDFIAKGLVH-GISEE-----KEAANQDLCSVPKQMDGEK------REEKTLSNLDD 959 (1652)
Q Consensus 892 ~~F~~q~~dlNISLtAi~llW~isD~L~~~~~~-~~~~~-----k~~~~~~~~~~~~~~~~~~------~e~~~~~l~~~ 959 (1652)
..=.-...+.-.-++|+++.-.++.--..-... ..... +-.+.. +..+...+.. -++..+.+
T Consensus 91 ~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i---~~qe~~sai~~e~lDil~d~lsr~--- 164 (1233)
T KOG1824|consen 91 CSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAI---SKQEDVSAIKCEVLDILADVLSRF--- 164 (1233)
T ss_pred hhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHh---hhcccchhhHHHHHHHHHHHHHhh---
Confidence 776444445555567777765443211100000 00000 000000 0000000000 00111110
Q ss_pred cCCCCCcchhhhhHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHhHHHhhhhhhccCCc
Q 000331 960 QNHSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSK 1039 (1652)
Q Consensus 960 ~~~~~~~~~~~~LW~~LL~~L~~L~~D~R~EVRn~AIqTLfril~s~g~~ls~~~W~~~~~~VLFPLL~~l~~~~~~~~~ 1039 (1652)
+.. .+ .+-..++-.+.-.-.-+|..||+.||..|=... .++.. ..+.+++=-+++.+...
T Consensus 165 --g~l-l~---~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la-~~~~~-------~ly~~li~~Ll~~L~~~------ 224 (1233)
T KOG1824|consen 165 --GTL-LP---NFHLSILKCLLPQLQSPRLAVRKKAITALGHLA-SSCNR-------DLYVELIEHLLKGLSNR------ 224 (1233)
T ss_pred --ccc-Cc---chHHHHHHHHhhcccChHHHHHHHHHHHHHHHH-HhcCH-------HHHHHHHHHHHhccCCC------
Confidence 000 01 122345556655567799999999998764433 34432 33445555555555311
Q ss_pred ccccccccCcCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHcCChhH
Q 000331 1040 DEWQGKELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKE 1119 (1652)
Q Consensus 1040 ~~~~~~~~~~~~~~~~~~~ihhsr~t~~k~W~ET~vlal~gl~klf~~~~~~L~~l~~F~~~W~~lL~~l~~~~~~~~~e 1119 (1652)
++..-.-|.+.+++.+++=-.+.|.. +-+| .-.-+.+|-. .+..+.+|
T Consensus 225 --------------------------~q~~~~rt~Iq~l~~i~r~ag~r~~~---h~~~--ivp~v~~y~~-~~e~~dDE 272 (1233)
T KOG1824|consen 225 --------------------------TQMSATRTYIQCLAAICRQAGHRFGS---HLDK--IVPLVADYCN-KIEEDDDE 272 (1233)
T ss_pred --------------------------CchHHHHHHHHHHHHHHHHhcchhhc---ccch--hhHHHHHHhc-ccccCcHH
Confidence 11122357777777777766555542 1111 1222444433 33667789
Q ss_pred HHHHHHHHHHHHHHhhc
Q 000331 1120 VSLAAINCLQTTVLSHS 1136 (1652)
Q Consensus 1120 ls~a~~~~L~~lL~~~~ 1136 (1652)
+-+..+..|.-+|....
T Consensus 273 LrE~~lQale~fl~rcp 289 (1233)
T KOG1824|consen 273 LREYCLQALESFLRRCP 289 (1233)
T ss_pred HHHHHHHHHHHHHHhCh
Confidence 99999999998887643
No 45
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=34.91 E-value=3.7e+02 Score=29.52 Aligned_cols=136 Identities=12% Similarity=0.077 Sum_probs=76.8
Q ss_pred ChHHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhccchhhHHHHHHhccHHHHhccCCcHHHHHHHHHHHHHH
Q 000331 751 NQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHV 830 (1652)
Q Consensus 751 ~~~lr~~Avd~L~~Li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~dIr~~iL~~L~~i 830 (1652)
|+.+|..|+.++.+++.++-. ..+. .+..+... -...++.||+..+.+|.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~--------------------------~ve~-~~~~l~~~-L~D~~~~VR~~al~~Ls~L 52 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN--------------------------LVEP-YLPNLYKC-LRDEDPLVRKTALLVLSHL 52 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH--------------------------HHHh-HHHHHHHH-HCCCCHHHHHHHHHHHHHH
Confidence 578999999999999885310 0110 00011111 2456789999999999999
Q ss_pred HHhcCCcccCChHHH-HHHHhhhhcccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHccCCCcchhHHHHH
Q 000331 831 LERCGEKLHYSWPSI-LELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAYSSQKTELNISLTAVG 909 (1652)
Q Consensus 831 L~~~g~~L~sgW~~I-f~IL~~v~~~~~~~lv~~aF~~L~lI~~dfl~~Lp~~~~~~lV~~L~~F~~q~~dlNISLtAi~ 909 (1652)
+.+ +.++- ...+ +.++... .|.++.+...|=.++.-+....-+..-.+. +++++..|.....+..+.-....
T Consensus 53 i~~--d~ik~-k~~l~~~~l~~l-~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~---~~e~i~~l~~~~~~~~~~~~~~~ 125 (178)
T PF12717_consen 53 ILE--DMIKV-KGQLFSRILKLL-VDENPEIRSLARSFFSELLKKRNPNIIYNN---FPELISSLNNCYEHPVYGPLSRE 125 (178)
T ss_pred HHc--Cceee-hhhhhHHHHHHH-cCCCHHHHHHHHHHHHHHHHhccchHHHHH---HHHHHHHHhCccccccccccCHH
Confidence 985 23332 2233 4666655 445667777777777766654222222344 45555555544322212112345
Q ss_pred HHHHHHHHHHcc
Q 000331 910 LLWTTTDFIAKG 921 (1652)
Q Consensus 910 llW~isD~L~~~ 921 (1652)
-++.+.+|+-+.
T Consensus 126 ~~~~I~~fll~~ 137 (178)
T PF12717_consen 126 KRKKIYKFLLDF 137 (178)
T ss_pred HHHHHHHHHHHH
Confidence 566677777654
No 46
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=34.74 E-value=9e+02 Score=29.26 Aligned_cols=156 Identities=17% Similarity=0.123 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHH
Q 000331 1071 DETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKGNLPVAYLNSVL 1150 (1652)
Q Consensus 1071 ~ET~vlal~gl~klf~~~~~~L~~l~~F~~~W~~lL~~l~~~~~~~~~els~a~~~~L~~lL~~~~~~~~~~~~~~~~~~ 1150 (1652)
..|+.-+|.++.++|.+++.. +...+...+|++.+.++++.++.+=...+.+.+.=+....+.. .-..+.++...
T Consensus 57 ~~~Re~aL~~l~~~l~~~~~~----d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g-~~~~ei~~~~~ 131 (309)
T PF05004_consen 57 SSTREAALEALIRALSSRYLP----DFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAG-EDSEEIFEELK 131 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccH----HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCC-ccHHHHHHHHH
Confidence 479999999999999888741 2234568889999999998877533334445544443433322 22456777777
Q ss_pred HHHHHhhcCCCCCCCCCCcchhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHcccCCCCCCccccCC--CCHHHH
Q 000331 1151 DVYEYALQKSPNYSDNAAGKVKQEILHGLGELYVQAQKMFDDRMYGQLLAIIDLAVRQTMITHDNYEIEFGH--VPPVLR 1228 (1652)
Q Consensus 1151 ~~w~~~~~~~~~~~~~~~~~~~q~~l~~f~~ly~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~d~~~--~s~lQ~ 1228 (1652)
.+..+++.-... ..+..+.++.+++-+.-. ..-+.+.+...+..|.......++..+...+.+.. -+++..
T Consensus 132 ~~L~~~l~d~s~-----~~~~R~~~~~aLai~~fv--~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 132 PVLKRILTDSSA-----SPKARAACLEALAICTFV--GGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred HHHHHHHhCCcc-----chHHHHHHHHHHHHHHHh--hcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 777666543211 123446666666554321 23456777766666663322112222222222222 468999
Q ss_pred HHHHhccccC
Q 000331 1229 TILEILPLLS 1238 (1652)
Q Consensus 1229 ~vl~~l~~i~ 1238 (1652)
+.|.+--++-
T Consensus 205 aAL~aW~lLl 214 (309)
T PF05004_consen 205 AALSAWALLL 214 (309)
T ss_pred HHHHHHHHHH
Confidence 9999855543
No 47
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=34.38 E-value=7.7e+02 Score=29.51 Aligned_cols=104 Identities=20% Similarity=0.250 Sum_probs=62.1
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhccchhhHHHHHHhccHHHHhccCCcH
Q 000331 738 QVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQST 817 (1652)
Q Consensus 738 ~l~~hli~v~~~~~~~lr~~Avd~L~~Li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~ 817 (1652)
.+.+.+.-...|++..+|+.|+..|--.+. ++++ .....+. .| ...+. ..+.
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~L--ld~~--------------------~a~~~l~-l~----~~~~~-~~~~ 78 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCL--LDKE--------------------LAKEHLP-LF----LQALQ-KDDE 78 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHH--hChH--------------------HHHHHHH-HH----HHHHH-hCCH
Confidence 333444467788889999999999986443 2210 0011121 12 22222 2378
Q ss_pred HHHHHHHHHHHHHHHhcCCcccCChH---------HHHHHHhhhhcccchhHHHHHHHHHH
Q 000331 818 DVRAGTLKILLHVLERCGEKLHYSWP---------SILELLRSVADASEKDLITLGFQSLR 869 (1652)
Q Consensus 818 dIr~~iL~~L~~iL~~~g~~L~sgW~---------~If~IL~~v~~~~~~~lv~~aF~~L~ 869 (1652)
+|+...++++-.++-.||...-..+. .+.+++.......++++-..+-+.+-
T Consensus 79 ~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~ 139 (298)
T PF12719_consen 79 EVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLC 139 (298)
T ss_pred HHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999999999977754443 35566655444334444444444443
No 48
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=34.28 E-value=2.2e+02 Score=28.28 Aligned_cols=28 Identities=39% Similarity=0.479 Sum_probs=22.3
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHH
Q 000331 975 AVFSLLKKLGADERPEVRNSAIRTLFQTL 1003 (1652)
Q Consensus 975 ~LL~~L~~L~~D~R~EVRn~AIqTLfril 1003 (1652)
.+|..|.+++.|+.+.||++| +.|=|.|
T Consensus 68 ~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 68 EIFDALCKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHHHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence 366888899999999999999 5555544
No 49
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=34.13 E-value=5.4e+02 Score=27.86 Aligned_cols=87 Identities=18% Similarity=0.056 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhhHHhhcCCCCCCCCCCCCCCCCcchhHHHHHHHHHHhhcc----------chhhHHHHHHHHHHHhcCC
Q 000331 681 VKSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSISFSVERMISILVNNLHR----------VEPLWDQVVGHFLELADNS 750 (1652)
Q Consensus 681 l~~fv~ALc~lS~e~l~~~~~~~~~~~~~~~~~~~F~L~kL~ev~~~N~~R----------~~~iW~~l~~hli~v~~~~ 750 (1652)
...+++.||.++........ .+........++.|+|+-+-.+...+-.. ...+++.+..++...+.++
T Consensus 8 a~~vf~~Lc~L~~~~~~~~~--~~~~~~~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~ 85 (168)
T PF12783_consen 8 AFLVFRDLCSLSSKPSDPGN--SPDFLSHDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSS 85 (168)
T ss_pred HHHHHHHHHHHhCCCCCCCC--CcchhhhhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence 34567889999854321111 00000112345678887665543222211 2456788899999998888
Q ss_pred ChHHHHHHHHHHHHHHHHH
Q 000331 751 NQHLRNIALDALDQSICAV 769 (1652)
Q Consensus 751 ~~~lr~~Avd~L~~Li~~~ 769 (1652)
+..+-..+...+..++.++
T Consensus 86 ~~~i~~~slri~~~l~~~~ 104 (168)
T PF12783_consen 86 DFPIFSRSLRIFLTLLSRF 104 (168)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 8888889999998887654
No 50
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=32.18 E-value=8.5e+02 Score=28.96 Aligned_cols=159 Identities=13% Similarity=0.051 Sum_probs=84.4
Q ss_pred hhhhHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHhHHHhhhhhhccCCcccccccccC
Q 000331 969 RDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELG 1048 (1652)
Q Consensus 969 ~~~LW~~LL~~L~~L~~D~R~EVRn~AIqTLfril~s~g~~ls~~~W~~~~~~VLFPLL~~l~~~~~~~~~~~~~~~~~~ 1048 (1652)
....|-.++-.+-.+.-|..+++|-.+++.|...+..-.. ..|..+.+.-++.++++.....-.
T Consensus 113 i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~----~~~~~L~~tGl~~v~~~al~~~L~------------ 176 (282)
T PF10521_consen 113 ISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPA----AEWDILRRTGLFSVFEDALFPCLY------------ 176 (282)
T ss_pred HHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCCh----hhhHHHHHcChHHHHHHHHHHHhh------------
Confidence 4456666777777889999999999999999999974322 125555555455444444321100
Q ss_pred cCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhh--hccccchHHHHHH-HHHHHHHHHcCChhHHHHHHH
Q 000331 1049 TRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPF--LANLSNFWTGWES-LLHFVKNSILNGSKEVSLAAI 1125 (1652)
Q Consensus 1049 ~~~~~~~~~~ihhsr~t~~k~W~ET~vlal~gl~klf~~~~~~--L~~l~~F~~~W~~-lL~~l~~~~~~~~~els~a~~ 1125 (1652)
+-..-+...+..+-...+...+-+++..-+.. -.....+.+...+ +|..+..........+..+.+
T Consensus 177 -----------~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll 245 (282)
T PF10521_consen 177 -----------YLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLL 245 (282)
T ss_pred -----------cCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHH
Confidence 00001111233344444555555554433211 0111223333322 444433333333578888889
Q ss_pred HHHHHHHHhhcCCCCCChhHHHHHHHHHHHhh
Q 000331 1126 NCLQTTVLSHSTKGNLPVAYLNSVLDVYEYAL 1157 (1652)
Q Consensus 1126 ~~L~~lL~~~~~~~~~~~~~~~~~~~~w~~~~ 1157 (1652)
+.+..++..++.. .-...+...-++..+.
T Consensus 246 ~~l~~~i~~lGi~---~~~hL~rii~~l~~~l 274 (282)
T PF10521_consen 246 QQLPPIIDELGIS---SVKHLQRIIPVLSQIL 274 (282)
T ss_pred HHHHHHHHHhccH---HHHHHHHHHHHHHHHh
Confidence 9999888876532 1345555555555443
No 51
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.52 E-value=1.5e+03 Score=30.73 Aligned_cols=262 Identities=17% Similarity=0.218 Sum_probs=152.5
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhccchhhHHHHHHhccHH-HHhccCCcHHHHHHHHH
Q 000331 747 ADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLR-VLYFSTQSTDVRAGTLK 825 (1652)
Q Consensus 747 ~~~~~~~lr~~Avd~L~~Li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~-~L~~~~~~~dIr~~iL~ 825 (1652)
..+|++.+|..|-+.|.++... .|. .|+.-+. +|...+...++|...==
T Consensus 10 tlSpD~n~~~~Ae~~l~~~~~~-----------------------------nf~-~F~~~Ls~vl~n~~~~~~~R~~AGL 59 (859)
T KOG1241|consen 10 TLSPDQNVRKRAEKQLEQAQSQ-----------------------------NFP-QFLVLLSEVLANDNSSDVARMAAGL 59 (859)
T ss_pred HcCCCcchHHHHHHHHHHHHhc-----------------------------cHH-HHHHHHHHHHhccCCcHHHHHHHhH
Confidence 4567888888888777775431 122 1222223 33333444556655555
Q ss_pred HHHHHHHhcCCccc----CChHHHH--------HHHhhhhcccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHHHHHH
Q 000331 826 ILLHVLERCGEKLH----YSWPSIL--------ELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGA 893 (1652)
Q Consensus 826 ~L~~iL~~~g~~L~----sgW~~If--------~IL~~v~~~~~~~lv~~aF~~L~lI~~dfl~~Lp~~~~~~lV~~L~~ 893 (1652)
.||+-|..+....+ +-|-.+= ..+..+-...++..-..|=+++-.|.. -.||.+..+.++.++..
T Consensus 60 ~LKN~L~akd~~~k~~~~qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~---~ElP~n~wp~li~~lv~ 136 (859)
T KOG1241|consen 60 QLKNSLTAKDPERKQQYQQRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIAC---IELPQNQWPELIVTLVS 136 (859)
T ss_pred HHhhhhccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHH---hhCchhhCHHHHHHHHH
Confidence 56666666555443 3454221 111111111244556678888888875 24788899999999998
Q ss_pred HHccCCCc---chhHHHHHHHHHHHHHHHcccCCCchhhhhhhhcccCCCccccCcchhhhhhhccccccCCCCCcchhh
Q 000331 894 YSSQKTEL---NISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRD 970 (1652)
Q Consensus 894 F~~q~~dl---NISLtAi~llW~isD~L~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~ 970 (1652)
-+.+..-. .-+|.|+|++= +.. ++ + .+. ...+
T Consensus 137 nv~~~~~~~~k~~slealGyic-------e~i---~p---e-----------vl~---------------------~~sN 171 (859)
T KOG1241|consen 137 NVGEEQASMVKESSLEALGYIC-------EDI---DP---E-----------VLE---------------------QQSN 171 (859)
T ss_pred hcccccchHHHHHHHHHHHHHH-------ccC---CH---H-----------HHH---------------------HHHh
Confidence 88776555 44777887752 210 01 0 000 0012
Q ss_pred hhHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHhHHHhhhhhhccCCcccccccccCcC
Q 000331 971 KLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTR 1050 (1652)
Q Consensus 971 ~LW~~LL~~L~~L~~D~R~EVRn~AIqTLfril~s~g~~ls~~~W~~~~~~VLFPLL~~l~~~~~~~~~~~~~~~~~~~~ 1050 (1652)
.....+..+. ....+-..||=.|...|...|.--+..|..+.=...|-+|+- + .+.++
T Consensus 172 ~iLtaIv~gm--rk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvc-------E--atq~~----------- 229 (859)
T KOG1241|consen 172 DILTAIVQGM--RKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVC-------E--ATQSP----------- 229 (859)
T ss_pred HHHHHHHhhc--cccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeee-------e--cccCC-----------
Confidence 2222222222 224566789999999999999876666666544333221110 0 01111
Q ss_pred CCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 000331 1051 GGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQT 1130 (1652)
Q Consensus 1051 ~~~~~~~~ihhsr~t~~k~W~ET~vlal~gl~klf~~~~~~L~~l~~F~~~W~~lL~~l~~~~~~~~~els~a~~~~L~~ 1130 (1652)
+ .+-++-|++.++|+..-|++.+.. .+.+. ++..--..|++++++|+..+++.-.+
T Consensus 230 -------------d------~~i~~aa~~ClvkIm~LyY~~m~~--yM~~a---lfaitl~amks~~deValQaiEFWst 285 (859)
T KOG1241|consen 230 -------------D------EEIQVAAFQCLVKIMSLYYEFMEP--YMEQA---LFAITLAAMKSDNDEVALQAIEFWST 285 (859)
T ss_pred -------------c------HHHHHHHHHHHHHHHHHHHHHHHH--HHHHH---HHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 1 267788999999999999987642 23332 66666677889999999999998876
Q ss_pred HH
Q 000331 1131 TV 1132 (1652)
Q Consensus 1131 lL 1132 (1652)
+-
T Consensus 286 ic 287 (859)
T KOG1241|consen 286 IC 287 (859)
T ss_pred HH
Confidence 54
No 52
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=31.09 E-value=1.2e+02 Score=30.13 Aligned_cols=71 Identities=14% Similarity=0.265 Sum_probs=52.6
Q ss_pred HHhccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCcccCChHHHHHHHhhhhcccchhHHHHHHHHHHHHHhc
Q 000331 802 AVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMND 874 (1652)
Q Consensus 802 ~ll~pl~~L~~~~~~~dIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~L~lI~~d 874 (1652)
.++.|+... ....+..||....++|.+|....++.+-..-..||..|.....+.+++ |+.|-+.|...+.|
T Consensus 27 ~Il~pVL~~-~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~-Vr~~a~~Ld~llkd 97 (97)
T PF12755_consen 27 EILPPVLKC-FDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDEN-VRSAAELLDRLLKD 97 (97)
T ss_pred HHHHHHHHH-cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh-HHHHHHHHHHHhcC
Confidence 456676655 456788999999999999998877666567788888887776665544 77777777655543
No 53
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=29.00 E-value=7.1e+02 Score=27.05 Aligned_cols=100 Identities=16% Similarity=0.031 Sum_probs=66.6
Q ss_pred HHHHHHcCcccccCC-HHHHHHHHHHHHHHHHHhhccccCCCCCCCCccHHHHHHHHHHHHHHHH-HhhhHhHHHHHHHH
Q 000331 262 LEFILSNHVSLFRML-VSYEQVLRHQICSLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLY-SSSLITECEVFLSM 339 (1652)
Q Consensus 262 lesvL~n~~~~F~~~-p~l~~llr~~lc~lLi~~lssn~~~~~~~~~~~F~~~~lRi~~~Li~~~-~~~L~~E~EvfLs~ 339 (1652)
|-+.|.+++.+-... ....+.++.++-.+| +++.. ..-+ .-+.++-.+++.- ...|...++.++..
T Consensus 4 ll~~l~~~~~~~~~~~~~~l~~l~~ri~~LL----~s~~~------~~rw--~G~~Ll~~~~~~~~~e~l~~~~~~W~~~ 71 (165)
T PF08167_consen 4 LLSTLRSCGLLLSAPSKSALHKLVTRINSLL----QSKSA------YSRW--AGLCLLKVTVEQCSWEILLSHGSQWLRA 71 (165)
T ss_pred HHHHHHccchhhcccCHHHHHHHHHHHHHHh----CCCCh------hhHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 345566666666554 566667777766666 54211 1112 2355555555554 57888999999999
Q ss_pred HHHHccCCCCHHHHHHHHHHHHHhh----cChHHHHHH
Q 000331 340 LVKVTFLDLPLWHRILVLEILRGFC----VEARTLRLL 373 (1652)
Q Consensus 340 Li~~l~~~~~~w~r~L~LEvl~~l~----~dp~ll~~i 373 (1652)
++++|+.+.|.--+..+...+..|+ .-|++.|++
T Consensus 72 Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei 109 (165)
T PF08167_consen 72 LLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREI 109 (165)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence 9999988777777888888888775 556666666
No 54
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=28.84 E-value=2.5e+03 Score=32.56 Aligned_cols=266 Identities=20% Similarity=0.281 Sum_probs=142.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhccchhhHHHHHHhccHHHHhccCCcHH
Q 000331 739 VVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTD 818 (1652)
Q Consensus 739 l~~hli~v~~~~~~~lr~~Avd~L~~Li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~d 818 (1652)
..+.|+....++++.+.+-|++.|.-+.. .+.|++ + ..-+....|+..+.. .....
T Consensus 1529 ~i~~Li~lL~s~~~~vqe~aa~ll~~l~~----~~~~~~----------~---------~~~~~aI~pLv~~l~-~~~~~ 1584 (2102)
T PLN03200 1529 AIEPLIPLLESPSQAVQQLAAELLSHLLA----EEHFQQ----------D---------ITTQNAVVPLVRLAG-IGILS 1584 (2102)
T ss_pred hHHHHHHHHcCCcHHHHHHHHHHHHHHhc----chHHhh----------h---------hhcccchHHHHHHhc-CCChh
Confidence 44666777777788888888888776542 222220 0 011123457777743 55678
Q ss_pred HHHHHHHHHHHHHHhcCCcccCChHH-------HHHHHhhhhcc---cchhHHHHHHHHHHHHHhccCCCCChhhHHHHH
Q 000331 819 VRAGTLKILLHVLERCGEKLHYSWPS-------ILELLRSVADA---SEKDLITLGFQSLRFIMNDGLSSIPTDCIHECV 888 (1652)
Q Consensus 819 Ir~~iL~~L~~iL~~~g~~L~sgW~~-------If~IL~~v~~~---~~~~lv~~aF~~L~lI~~dfl~~Lp~~~~~~lV 888 (1652)
.|+...++| +++...|+. ||+++..+.+. ..-.++..||.+|.-+.. ++. ..+|..-|
T Consensus 1585 ~~~~A~~aL--------~~~~~~w~~~v~~~ggv~~l~~~~~~~d~~~~~~l~~~a~~vl~n~~~--~~~--~~~~~v~~ 1652 (2102)
T PLN03200 1585 LQQRAVKAL--------ESISLSWPKAVADAGGIFELSKVILQADPQPPHALWESAASVLSNILR--FSS--EYYFEVPV 1652 (2102)
T ss_pred HHHHHHHHH--------HHhhcccHHHHHHccCHHHHHHHHHccCCCCchhhHHHHHHHHHHHhc--cCc--eeEEEeeH
Confidence 899999998 345668843 55666555442 223588889888887753 111 12333344
Q ss_pred HHHHHHHccCCCcchhHHHHHHHHHHHHHHHcccCCCchhhhhhhhcccCCCccccCcchhhhhhhccccccCCCCCcch
Q 000331 889 DVTGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVD 968 (1652)
Q Consensus 889 ~~L~~F~~q~~dlNISLtAi~llW~isD~L~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~ 968 (1652)
.++.+....+ +...-..|+.++-.+.
T Consensus 1653 ~~lvkl~~s~-~e~~~~~a~~~l~~~~----------------------------------------------------- 1678 (2102)
T PLN03200 1653 AVLVKLLRST-SESTVVVALNALLVLE----------------------------------------------------- 1678 (2102)
T ss_pred HHHHHHHhcc-chhHHHHHHHHHHHHH-----------------------------------------------------
Confidence 4455544442 3333334444432110
Q ss_pred hhhhHHHHHHHHHHhccC---CcHHHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHhHHhHHHhhhhhhccCCcccccc
Q 000331 969 RDKLLFAVFSLLKKLGAD---ERPEVRNSAIRTLFQTLGSHG-QKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQG 1044 (1652)
Q Consensus 969 ~~~LW~~LL~~L~~L~~D---~R~EVRn~AIqTLfril~s~g-~~ls~~~W~~~~~~VLFPLL~~l~~~~~~~~~~~~~~ 1044 (1652)
..| .-.-++.|||+.|.+.+.+|- .....-.-+.+|+++= +++...+ + .
T Consensus 1679 ---------------~~d~~~~~~~~~~g~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--~--~-- 1731 (2102)
T PLN03200 1679 ---------------RDDSSSAEQMAESGAIEALLELLRSHQCEEAAARLLEALFNNVK------VREMKAT--K--Y-- 1731 (2102)
T ss_pred ---------------hcchhHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHhcCcc------hhhhhhH--H--H--
Confidence 011 113478899999999999875 3333322222222221 1111000 0 0
Q ss_pred cccCcCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHcCChhHHHHHH
Q 000331 1045 KELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAA 1124 (1652)
Q Consensus 1045 ~~~~~~~~~~~~~~ihhsr~t~~k~W~ET~vlal~gl~klf~~~~~~L~~l~~F~~~W~~lL~~l~~~~~~~~~els~a~ 1124 (1652)
.+ .+...+.- | .|.+-..-+.++.-.++++|. .+.|....++..+-..++..++. +..+|+...+
T Consensus 1732 -~~-----~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 1796 (2102)
T PLN03200 1732 -AI-----APLSQYLL---D-PQTRSQQARLLAALALGDLFQ--HEGLARSTDAVSACRALVSLLED---QPTEEMKMVA 1796 (2102)
T ss_pred -hc-----CcHHHHhc---C-cccccHHHHHHHHHHhccchh--hhhhhhccCcHHHHHHHHHHhcc---CchHHHHHHH
Confidence 00 00000000 0 011112345566666777763 24566667777777777776653 5668899999
Q ss_pred HHHHHHHHHhhc
Q 000331 1125 INCLQTTVLSHS 1136 (1652)
Q Consensus 1125 ~~~L~~lL~~~~ 1136 (1652)
+-.|||++....
T Consensus 1797 ~~~~~~~~~~~~ 1808 (2102)
T PLN03200 1797 ICALQNLVMHSR 1808 (2102)
T ss_pred HHHHHHHHHhcc
Confidence 999999876543
No 55
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=26.83 E-value=9.1e+02 Score=30.72 Aligned_cols=112 Identities=23% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHhHHHhhhhhhccCCcccccccccCcCCCcc
Q 000331 975 AVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKA 1054 (1652)
Q Consensus 975 ~LL~~L~~L~~D~R~EVRn~AIqTLfril~s~g~~ls~~~W~~~~~~VLFPLL~~l~~~~~~~~~~~~~~~~~~~~~~~~ 1054 (1652)
.+...|..+..++|.+=|++|++-|..++. .+.|+- |+.+|.++|.-+|+.+.
T Consensus 287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~--e~sfsv--Weq~f~~iL~~l~EvL~----------------------- 339 (516)
T KOG2956|consen 287 LVADLLKEISGSERASERKEALSELPKMLC--EGSFSV--WEQHFAEILLLLLEVLS----------------------- 339 (516)
T ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHH--ccchhH--HHHHHHHHHHHHHHHHc-----------------------
Q ss_pred chhhcccccchhhhhHHHH-HHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 000331 1055 VHMLIHHSRNTAQKQWDET-LVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTT 1131 (1652)
Q Consensus 1055 ~~~~ihhsr~t~~k~W~ET-~vlal~gl~klf~~~~~~L~~l~~F~~~W~~lL~~l~~~~~~~~~els~a~~~~L~~l 1131 (1652)
+.-+++ +.+||+-+.++...-=..| |+..=..+-..++..-......+..|+-.|+..+
T Consensus 340 -------------d~~~~~~k~laLrvL~~ml~~Q~~~l-----~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~l 399 (516)
T KOG2956|consen 340 -------------DSEDEIIKKLALRVLREMLTNQPARL-----FDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTL 399 (516)
T ss_pred -------------cchhhHHHHHHHHHHHHHHHhchHhh-----hchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
No 56
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=26.48 E-value=1.7e+02 Score=39.47 Aligned_cols=91 Identities=14% Similarity=0.246 Sum_probs=65.3
Q ss_pred HcCcccccCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCccHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHccC
Q 000331 267 SNHVSLFRMLVSYEQVLRHQICSLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVKVTFL 346 (1652)
Q Consensus 267 ~n~~~~F~~~p~l~~llr~~lc~lLi~~lssn~~~~~~~~~~~F~~~~lRi~~~Li~~~~~~L~~E~EvfLs~Li~~l~~ 346 (1652)
+.-..+..=.|+|.+-.+..+||+++..+..+++ .|+...++.-+|--+++ -....+..+|.++..|+.+++.
T Consensus 552 E~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~------DP~V~~~~qd~f~el~q-~~~~~g~m~e~~iPslisil~~ 624 (1005)
T KOG2274|consen 552 EALSSVVKLDPEFAASMESKICPLTINLFLKYSE------DPQVASLAQDLFEELLQ-IAANYGPMQERLIPSLISVLQL 624 (1005)
T ss_pred HHHHHHhccChhhhhhhhcchhHHHHHHHHHhcC------CchHHHHHHHHHHHHHH-HHHhhcchHHHHHHHHHHHHcC
Confidence 3333455567999999999999999999887653 56554455555555544 3346678999999999999854
Q ss_pred C---CCHHHHHHHHHHHHHhh
Q 000331 347 D---LPLWHRILVLEILRGFC 364 (1652)
Q Consensus 347 ~---~~~w~r~L~LEvl~~l~ 364 (1652)
+ .|.-.-.++++++.-+.
T Consensus 625 ~~~~~~~~l~~~aidvLttvv 645 (1005)
T KOG2274|consen 625 NADKAPAGLCAIAIDVLTTVL 645 (1005)
T ss_pred cccccCchhhHHHHHHHHHHH
Confidence 3 35667788888887553
No 57
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=26.18 E-value=1.6e+02 Score=29.10 Aligned_cols=69 Identities=13% Similarity=0.060 Sum_probs=48.4
Q ss_pred HHHHHHhhcChhHHHHHHHHHHHHhCCCCC-CcccCchhHHHHHHHHhcCCCchhHHHHHHHHHHHHhcC
Q 000331 13 ALSAEARRRYPAVKDGAEHAILKLRSLSSP-SELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHD 81 (1652)
Q Consensus 13 ~L~~EskRk~~~lk~A~e~sl~~Lk~~~~~-~~l~~~~~~l~PfllaC~skn~kl~~iaL~~lqkLi~~~ 81 (1652)
.|..-.+..++++|+.+=.++..+-..... ........++.+++-...+++.++...|+.+|..|...+
T Consensus 11 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 11 ALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 344444566788898888888887654221 111223467777777778889999999999999997655
No 58
>KOG1766 consensus Enhancer of rudimentary [General function prediction only]
Probab=24.76 E-value=1.1e+02 Score=29.73 Aligned_cols=49 Identities=12% Similarity=0.302 Sum_probs=33.1
Q ss_pred hhhhhHH--HHHHHHHHHHHHHHHhhhhhhcc-ccchHHHHHHHHHHHHHHH
Q 000331 1065 TAQKQWD--ETLVLVLGGIARLLRSFFPFLAN-LSNFWTGWESLLHFVKNSI 1113 (1652)
Q Consensus 1065 t~~k~W~--ET~vlal~gl~klf~~~~~~L~~-l~~F~~~W~~lL~~l~~~~ 1113 (1652)
.+...|- |+...++.|+|++|..|+..... .+...---..|.+|++.+.
T Consensus 14 ~esRT~~DYesv~e~megiCk~yEe~Lkk~nPs~~~ITYDIsqlfeFiD~L~ 65 (104)
T KOG1766|consen 14 PESRTWGDYESVTECMEGICKMYEEHLKKKNPSAPPITYDISQLFEFIDDLA 65 (104)
T ss_pred cccccccchHhHHHHHHHHHHHHHHHHHhcCCCCCCcceeHHHHHHHHHHHh
Confidence 3335674 89999999999999999987632 1222222356777777653
No 59
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=22.07 E-value=1.7e+03 Score=28.35 Aligned_cols=276 Identities=13% Similarity=0.120 Sum_probs=134.3
Q ss_pred hhHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHhccccccccccccCCCChhhhhccchhhHHHHHHhccHHHHhc
Q 000331 734 PLWDQVVGHFLELADNS-NQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYF 812 (1652)
Q Consensus 734 ~iW~~l~~hli~v~~~~-~~~lr~~Avd~L~~Li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~ 812 (1652)
.+=+.++.-+..++.+| |+..--|.-+++--++....+. +......||..++-||..+..
T Consensus 67 ~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~-------------------~~~~v~~~E~~L~P~f~~ILq 127 (435)
T PF03378_consen 67 EILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEA-------------------DPEAVSQFEEALFPPFQEILQ 127 (435)
T ss_dssp HHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GG-------------------GHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCC-------------------ChhHHHHHHHHHHHHHHHHHH
Confidence 34445555566777887 8999999888888877632211 012234688788888887754
Q ss_pred cCCcHHHHHHHHHHHHHHHHhcC-CcccCChHHHHHHHhhhhcccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHHHH
Q 000331 813 STQSTDVRAGTLKILLHVLERCG-EKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVT 891 (1652)
Q Consensus 813 ~~~~~dIr~~iL~~L~~iL~~~g-~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~L~lI~~dfl~~Lp~~~~~~lV~~L 891 (1652)
.+. .|.---+++-+..+++.+. ..+......+|..|-+..- =.- ..+++.++..|
T Consensus 128 ~dV-~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~l----------------------We~-~gniPalvrLL 183 (435)
T PF03378_consen 128 QDV-QEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPAL----------------------WER-RGNIPALVRLL 183 (435)
T ss_dssp TT--TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGG----------------------GGS-TTTHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcch----------------------hcc-CCCcCcHHHHH
Confidence 321 2555556677777887766 4554444444444433211 001 12466677777
Q ss_pred HHHHccCCCcchhHHHHHHHHHHHHHHHcccCCCchhhhhhhhcccCCCccccCcchhhhhhhccccccCCCCCcchhhh
Q 000331 892 GAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDK 971 (1652)
Q Consensus 892 ~~F~~q~~dlNISLtAi~llW~isD~L~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~ 971 (1652)
.+|.+.....-.+-.-+.-++.+-..|-.. +.. ...+.. .-+.....++.. ... .-...
T Consensus 184 ~a~i~k~~~~i~~~~~l~~iLgvFQkLi~s---k~~--D~~gF~------------LL~~iv~~~p~~---~l~-~yl~~ 242 (435)
T PF03378_consen 184 QAYIKKDPSFIVANNQLEPILGVFQKLIAS---KAN--DHYGFD------------LLESIVENLPPE---ALE-PYLKQ 242 (435)
T ss_dssp HHHHHHHGGG----S-CHHHHHHHHHHHT----TTC--HHHHHH------------HHHHHHHHS-HH---HHG-GGHHH
T ss_pred HHHHHhCchhhcchhhHHHHHHHHHHHHCC---CCc--chHHHH------------HHHHHHHHCCHH---HHH-HHHHH
Confidence 777665433222222334445554444432 100 000000 001111111100 000 12346
Q ss_pred hHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHhcc--------CCCCHHHHHHHHHHhHHhHHHhhhhhhccCCccccc
Q 000331 972 LLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHG--------QKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQ 1043 (1652)
Q Consensus 972 LW~~LL~~L~~L~~D~R~EVRn~AIqTLfril~s~g--------~~ls~~~W~~~~~~VLFPLL~~l~~~~~~~~~~~~~ 1043 (1652)
+|..+|.+|.+- .-...+++=+..+.-....|| +...+..|..++.+++.|-++++...
T Consensus 243 I~~lll~RLq~s---kT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~---------- 309 (435)
T PF03378_consen 243 IFTLLLTRLQSS---KTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGP---------- 309 (435)
T ss_dssp HHHHHHHHHHHC-----HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SH----------
T ss_pred HHHHHHHHHhhC---CcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCc----------
Confidence 888888888652 222333333322222223344 23456678888888888876665311
Q ss_pred ccccCcCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHcCCh
Q 000331 1044 GKELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGS 1117 (1652)
Q Consensus 1044 ~~~~~~~~~~~~~~~ihhsr~t~~k~W~ET~vlal~gl~klf~~~~~~L~~l~~F~~~W~~lL~~l~~~~~~~~ 1117 (1652)
.| +..+.=|++|+...- +.+.+ ...+.|..+++-+-+++....
T Consensus 310 ---------------------------~e-rKi~~vGltkLL~es-~~~~~--~~~~~w~~ll~~Ll~ll~~p~ 352 (435)
T PF03378_consen 310 ---------------------------IE-RKICAVGLTKLLCES-PAFLS--EYSQLWPPLLEALLKLLERPP 352 (435)
T ss_dssp ---------------------------HH-HHHHHHHHHHHHHSS-TTHHH--H-CHHHHHHHHHHHHHHHTTS
T ss_pred ---------------------------ch-hhHHHHHHHHHHhcc-Hhhhh--HHHHHHHHHHHHHHHHHcCCc
Confidence 12 334556777777542 22211 145789999998888776544
No 60
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=21.88 E-value=1.2e+03 Score=28.39 Aligned_cols=116 Identities=19% Similarity=0.290 Sum_probs=75.5
Q ss_pred HhccHHHHhccCCcHHHHH-HHHHHHHHHHHhcCCcccCChHHHHHHH-hhh----hc--ccchhHHHHHHHHHHHHHhc
Q 000331 803 VISPLRVLYFSTQSTDVRA-GTLKILLHVLERCGEKLHYSWPSILELL-RSV----AD--ASEKDLITLGFQSLRFIMND 874 (1652)
Q Consensus 803 ll~pl~~L~~~~~~~dIr~-~iL~~L~~iL~~~g~~L~sgW~~If~IL-~~v----~~--~~~~~lv~~aF~~L~lI~~d 874 (1652)
++.++..-|..+ .++.|+ .+|.++..++.+-++.+...=+.|++.+ ..+ .+ ...|+.-..=|.-++-|+..
T Consensus 72 l~~~vL~DY~~~-~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~ 150 (319)
T PF08767_consen 72 LLDAVLGDYQNS-VPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEH 150 (319)
T ss_dssp HHHHHHHHHHHS--GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHH
Confidence 333444445443 233332 3577888888887877776666666433 222 11 13466777777888888876
Q ss_pred cCC---CCChhhHHHHHHHHHHHHccCCCcchhHHHHHHHHHHHHHHHc
Q 000331 875 GLS---SIPTDCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAK 920 (1652)
Q Consensus 875 fl~---~Lp~~~~~~lV~~L~~F~~q~~dlNISLtAi~llW~isD~L~~ 920 (1652)
+++ .+|++.|..+++++ .+|-+..+-+|+-+++..+-.+.+.+.+
T Consensus 151 ~f~~l~~lp~~~f~~~idsi-~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 151 CFPALLQLPPEQFKLVIDSI-VWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HTHHHHHS-HHHHHHHHHHH-HHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHcCCHHHHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 544 47999999999999 6777777999999988888776666654
No 61
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=21.17 E-value=4.8e+02 Score=31.73 Aligned_cols=115 Identities=16% Similarity=0.148 Sum_probs=76.0
Q ss_pred CcHHHHHHHHHHHHHHHH-hccCCCCHHHHHHHHHHhHHhHHHhhhhhhccCCcccccccccCcCCCccchhhcccccch
Q 000331 987 ERPEVRNSAIRTLFQTLG-SHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNT 1065 (1652)
Q Consensus 987 ~R~EVRn~AIqTLfril~-s~g~~ls~~~W~~~~~~VLFPLL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ihhsr~t 1065 (1652)
.-|+.|..-+=.++.++- ..|+.+.+ .-..++..|.-|.++=+.+. .
T Consensus 83 ~~p~~r~~evL~l~~~ii~kl~~~~~~-~v~~I~~~vf~~Tl~MI~~d----------~--------------------- 130 (319)
T PF08767_consen 83 SVPDAREPEVLSLMATIINKLGELIQP-QVPQILEAVFECTLPMINKD----------F--------------------- 130 (319)
T ss_dssp S-GGGS-HHHHHHHHHHHHHHGGGCCC-CHHHHHHHHHHHHHHHHSST----------S---------------------
T ss_pred CCccccChhHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHhh----------h---------------------
Confidence 557777776666666554 45655543 33456666666666655311 0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcC
Q 000331 1066 AQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHST 1137 (1652)
Q Consensus 1066 ~~k~W~ET~vlal~gl~klf~~~~~~L~~l~~F~~~W~~lL~~l~~~~~~~~~els~a~~~~L~~lL~~~~~ 1137 (1652)
.+.-|-++--.+.+..+...+|..+..++ .+.+..+++.+...+.....+++..+++.+.+++.....
T Consensus 131 --~~yPe~r~~ff~LL~~i~~~~f~~l~~lp--~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 131 --EEYPEHRVNFFKLLRAINEHCFPALLQLP--PEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp --SSSHHHHHHHHHHHHHHHHHHTHHHHHS---HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred --hhChHHHHHHHHHHHHHHHHhHHHHHcCC--HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 11225556666677777777787776554 245677899999999999999999999999999976554
No 62
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=20.79 E-value=8.1e+02 Score=28.81 Aligned_cols=128 Identities=13% Similarity=0.128 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhh-cChhHHHHHHHHHHHHhCCCCCCcccCchhHHHHHHHHhcCCCchhHHHHHHHHHHHHhcCCCCcch
Q 000331 9 SDLRALSAEARR-RYPAVKDGAEHAILKLRSLSSPSELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAPSA 87 (1652)
Q Consensus 9 ~dL~~L~~EskR-k~~~lk~A~e~sl~~Lk~~~~~~~l~~~~~~l~PfllaC~skn~kl~~iaL~~lqkLi~~~~i~~~~ 87 (1652)
.+|+.|+.--+. +.|.+++.+--++......+...+..+.-..+.++.--..++++++..-|+.+|.-|-... =....
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~-en~~~ 90 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVND-ENQEQ 90 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCCh-hhHHH
Confidence 578888877664 6799999999999998777665555555566777777788899999999999998763221 11112
Q ss_pred ----HHHHHHHHHcccCCCCchHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHhhhcc
Q 000331 88 ----LKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQALGICLRLLE 142 (1652)
Q Consensus 88 ----l~~Il~~l~~~~~~~~e~VqLkILQ~L~~l~~s~~~~~~g~~L~~~l~~C~~L~~ 142 (1652)
+.+|.+.+..+ .. +..+|+--|+.|..+-.+. -+...+.+.+.-+++|..
T Consensus 91 Ik~~i~~Vc~~~~s~-~l-ns~~Q~agLrlL~nLtv~~---~~~~~l~~~i~~ll~LL~ 144 (254)
T PF04826_consen 91 IKMYIPQVCEETVSS-PL-NSEVQLAGLRLLTNLTVTN---DYHHMLANYIPDLLSLLS 144 (254)
T ss_pred HHHHHHHHHHHHhcC-CC-CCHHHHHHHHHHHccCCCc---chhhhHHhhHHHHHHHHH
Confidence 34444433322 22 3368999999999984432 123457777777777743
No 63
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=20.32 E-value=5.7e+02 Score=23.78 Aligned_cols=54 Identities=11% Similarity=0.118 Sum_probs=42.0
Q ss_pred HHHHH-hhcChhHHHHHHHHHHHHhCCCCCCcccCchhHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 000331 14 LSAEA-RRRYPAVKDGAEHAILKLRSLSSPSELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKL 77 (1652)
Q Consensus 14 L~~Es-kRk~~~lk~A~e~sl~~Lk~~~~~~~l~~~~~~l~PfllaC~skn~kl~~iaL~~lqkL 77 (1652)
|..-. +-+++.+|..+=++|..+ ..++.+.+++-.+++.++.+-..|+.+|.++
T Consensus 4 L~~~l~~~~~~~vr~~a~~~L~~~----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 4 LLQLLQNDPDPQVRAEAARALGEL----------GDPEAIPALIELLKDEDPMVRRAAARALGRI 58 (88)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHCC----------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 44444 467889998877777732 3457888888889999999999999999876
No 64
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=20.31 E-value=1.1e+02 Score=33.97 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhcCCCchhHHHHHHHHHHHHhcC
Q 000331 49 EDILRIFLMACEVRTVKLSVIGLSCIQKLISHD 81 (1652)
Q Consensus 49 ~~~l~PfllaC~skn~kl~~iaL~~lqkLi~~~ 81 (1652)
++++.|+.-|-.|+++.+...+|.+||+|+..+
T Consensus 79 PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 79 PQLIIPLKRALNTRDPEVFCATLKALQQLVTSS 111 (183)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Done!