Query 000332
Match_columns 1651
No_of_seqs 468 out of 729
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 04:42:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000332.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000332hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1473 Nucleosome remodeling 100.0 9.2E-33 2E-37 338.9 24.7 276 1037-1349 409-701 (1414)
2 PF02791 DDT: DDT domain; Int 99.3 1.7E-12 3.6E-17 117.7 6.7 60 464-523 1-61 (61)
3 smart00571 DDT domain in diffe 99.3 3.4E-12 7.3E-17 116.6 6.5 59 464-522 1-62 (63)
4 KOG1245 Chromatin remodeling c 99.0 3E-09 6.6E-14 141.8 16.5 241 856-1122 650-949 (1404)
5 PF15613 WHIM2: WSTF, HB1, Itc 99.0 5.3E-10 1.2E-14 93.1 4.0 37 1039-1075 1-37 (38)
6 PF11600 CAF-1_p150: Chromatin 98.7 2.6E-06 5.6E-11 95.0 24.1 18 434-451 199-216 (216)
7 PF15614 WHIM3: WSTF, HB1, Itc 98.7 1.6E-08 3.4E-13 87.5 3.9 35 1078-1112 1-36 (46)
8 PF05066 HARE-HTH: HB1, ASXL, 98.3 3.1E-07 6.7E-12 85.6 3.8 67 646-714 1-71 (72)
9 PTZ00121 MAEBL; Provisional 98.3 4.1E-05 8.9E-10 99.9 21.4 11 1255-1265 2001-2011(2084)
10 PTZ00121 MAEBL; Provisional 98.2 5.7E-05 1.2E-09 98.6 21.5 12 1260-1271 1994-2005(2084)
11 KOG4364 Chromatin assembly fac 98.2 5.6E-05 1.2E-09 93.3 19.2 29 336-364 308-336 (811)
12 PF15612 WHIM1: WSTF, HB1, Itc 98.2 1.5E-06 3.2E-11 76.0 4.1 48 857-904 3-50 (50)
13 PTZ00266 NIMA-related protein 98.1 6.7E-05 1.4E-09 98.9 19.5 13 93-105 229-241 (1021)
14 PF11600 CAF-1_p150: Chromatin 98.1 0.00026 5.6E-09 79.3 19.5 19 370-388 154-172 (216)
15 KOG4364 Chromatin assembly fac 98.0 0.00027 5.8E-09 87.6 18.8 12 648-659 479-490 (811)
16 PTZ00266 NIMA-related protein 98.0 8.3E-05 1.8E-09 98.1 15.3 8 659-666 721-728 (1021)
17 KOG1029 Endocytic adaptor prot 97.9 0.0004 8.6E-09 87.0 19.4 24 850-873 720-744 (1118)
18 KOG1029 Endocytic adaptor prot 97.8 0.0013 2.7E-08 82.8 21.2 20 312-331 354-373 (1118)
19 KOG2891 Surface glycoprotein [ 97.7 0.0025 5.4E-08 72.8 20.0 20 272-291 277-296 (445)
20 PF05672 MAP7: MAP7 (E-MAP-115 97.4 0.015 3.3E-07 63.5 20.2 38 375-412 109-146 (171)
21 KOG2891 Surface glycoprotein [ 97.0 0.024 5.1E-07 65.2 17.3 28 359-386 385-412 (445)
22 PRK09510 tolA cell envelope in 96.8 0.067 1.5E-06 65.1 19.2 11 571-581 304-314 (387)
23 KOG1144 Translation initiation 96.4 0.053 1.1E-06 69.3 15.6 20 352-371 239-258 (1064)
24 PF05262 Borrelia_P83: Borreli 96.4 0.13 2.7E-06 64.4 18.4 26 84-109 18-43 (489)
25 KOG0163 Myosin class VI heavy 95.8 0.19 4.1E-06 64.1 15.8 25 483-507 1064-1089(1259)
26 PF15236 CCDC66: Coiled-coil d 95.5 1.3 2.8E-05 48.4 19.2 11 328-338 88-98 (157)
27 KOG2072 Translation initiation 95.5 1.4 3.1E-05 57.4 22.2 20 103-122 386-405 (988)
28 KOG1144 Translation initiation 95.5 0.079 1.7E-06 67.8 11.2 28 642-669 542-569 (1064)
29 COG3064 TolA Membrane protein 95.4 0.76 1.6E-05 54.4 17.8 12 574-585 312-323 (387)
30 KOG0163 Myosin class VI heavy 95.2 0.54 1.2E-05 60.3 17.0 17 563-582 1172-1188(1259)
31 PF05672 MAP7: MAP7 (E-MAP-115 95.1 1.8 3.8E-05 48.0 18.5 31 269-300 22-52 (171)
32 KOG3054 Uncharacterized conser 95.1 0.17 3.8E-06 57.8 11.2 24 476-499 201-225 (299)
33 KOG2412 Nuclear-export-signal 95.0 0.34 7.3E-06 60.6 14.5 13 470-482 357-369 (591)
34 COG3064 TolA Membrane protein 95.0 2 4.3E-05 51.1 19.6 11 573-583 349-359 (387)
35 PF13904 DUF4207: Domain of un 94.7 2.7 5.7E-05 49.3 20.0 8 414-421 234-241 (264)
36 KOG2412 Nuclear-export-signal 94.7 0.32 7E-06 60.8 12.9 16 571-586 521-536 (591)
37 PF13904 DUF4207: Domain of un 93.9 3.1 6.8E-05 48.7 18.4 29 409-441 225-254 (264)
38 PRK12704 phosphodiesterase; Pr 91.2 32 0.0007 44.3 23.5 15 485-499 278-292 (520)
39 KOG0579 Ste20-like serine/thre 90.7 69 0.0015 42.2 28.4 82 211-301 736-818 (1187)
40 KOG0742 AAA+-type ATPase [Post 90.2 43 0.00094 42.0 22.1 19 887-905 599-617 (630)
41 KOG2002 TPR-containing nuclear 89.2 3.5 7.6E-05 55.0 13.0 10 115-124 557-566 (1018)
42 PRK00106 hypothetical protein; 88.9 37 0.00079 44.0 21.3 11 622-632 399-409 (535)
43 TIGR03319 YmdA_YtgF conserved 88.6 67 0.0014 41.5 23.4 8 692-699 357-364 (514)
44 PRK12704 phosphodiesterase; Pr 88.6 37 0.00081 43.7 21.2 10 690-699 361-370 (520)
45 KOG4848 Extracellular matrix-a 88.3 27 0.00059 39.5 17.1 13 366-378 202-214 (225)
46 PF09726 Macoilin: Transmembra 88.3 39 0.00084 45.0 21.6 20 266-285 415-434 (697)
47 PF07888 CALCOCO1: Calcium bin 88.0 71 0.0015 41.5 22.8 23 440-462 513-537 (546)
48 KOG3654 Uncharacterized CH dom 87.8 2.1 4.5E-05 53.3 9.1 32 225-256 291-322 (708)
49 PRK00106 hypothetical protein; 86.7 59 0.0013 42.1 21.3 8 478-485 249-256 (535)
50 PF07946 DUF1682: Protein of u 86.4 2.1 4.6E-05 51.3 8.2 10 120-129 119-128 (321)
51 KOG0742 AAA+-type ATPase [Post 86.3 58 0.0013 41.0 19.8 10 644-653 392-401 (630)
52 PF10147 CR6_interact: Growth 85.1 49 0.0011 38.4 17.5 14 209-222 34-47 (217)
53 PF00769 ERM: Ezrin/radixin/mo 83.4 55 0.0012 38.3 17.6 13 274-286 3-15 (246)
54 PF09756 DDRGK: DDRGK domain; 82.1 0.43 9.3E-06 53.4 0.0 26 476-501 100-126 (188)
55 KOG3654 Uncharacterized CH dom 81.4 7.3 0.00016 48.8 9.8 22 565-589 630-651 (708)
56 KOG0579 Ste20-like serine/thre 81.2 1.6E+02 0.0036 39.0 21.2 13 310-322 868-880 (1187)
57 PF00769 ERM: Ezrin/radixin/mo 79.0 1.4E+02 0.003 35.1 19.0 8 515-522 192-199 (246)
58 KOG0577 Serine/threonine prote 78.2 1.1E+02 0.0025 40.2 18.6 10 574-583 724-733 (948)
59 COG4942 Membrane-bound metallo 77.2 1E+02 0.0022 39.0 17.6 8 565-572 410-417 (420)
60 PF02029 Caldesmon: Caldesmon; 77.0 7.7 0.00017 49.3 8.5 26 458-483 411-436 (492)
61 PF09731 Mitofilin: Mitochondr 76.8 2.4E+02 0.0052 36.6 21.9 10 604-613 519-528 (582)
62 KOG1265 Phospholipase C [Lipid 75.8 2.2E+02 0.0047 39.1 20.5 16 101-116 853-868 (1189)
63 PLN03086 PRLI-interacting fact 73.9 15 0.00033 47.5 10.0 22 693-714 214-235 (567)
64 KOG3634 Troponin [Cytoskeleton 73.8 18 0.0004 43.7 9.9 11 469-479 238-248 (361)
65 PF02029 Caldesmon: Caldesmon; 73.5 21 0.00046 45.6 11.0 9 93-101 80-88 (492)
66 PF06524 NOA36: NOA36 protein; 72.8 3.9 8.4E-05 47.7 4.1 23 1220-1243 36-58 (314)
67 PF09726 Macoilin: Transmembra 70.9 2.7E+02 0.0059 37.5 20.5 14 491-504 631-644 (697)
68 PLN03086 PRLI-interacting fact 70.5 20 0.00043 46.5 10.0 10 1254-1263 529-538 (567)
69 PF09731 Mitofilin: Mitochondr 70.3 3.4E+02 0.0073 35.4 23.0 7 505-511 495-501 (582)
70 PRK00409 recombination and DNA 69.0 1.3E+02 0.0029 40.7 17.4 14 480-493 703-716 (782)
71 COG4942 Membrane-bound metallo 68.6 3.3E+02 0.0072 34.7 20.9 8 477-484 308-315 (420)
72 PF10147 CR6_interact: Growth 67.1 2.4E+02 0.0053 33.0 16.5 7 269-275 85-91 (217)
73 PF12128 DUF3584: Protein of u 63.4 5.9E+02 0.013 36.5 22.5 35 1307-1341 1102-1143(1201)
74 COG2268 Uncharacterized protei 63.1 3.8E+02 0.0082 35.3 18.7 23 274-296 283-305 (548)
75 KOG0996 Structural maintenance 62.9 5.2E+02 0.011 36.8 20.5 18 89-106 85-102 (1293)
76 TIGR01069 mutS2 MutS2 family p 62.6 1.9E+02 0.004 39.4 16.9 17 479-495 691-707 (771)
77 KOG1265 Phospholipase C [Lipid 62.0 5.1E+02 0.011 35.9 19.7 8 268-275 1028-1035(1189)
78 TIGR01069 mutS2 MutS2 family p 61.3 1.9E+02 0.0041 39.3 16.6 11 566-576 697-707 (771)
79 KOG3598 Thyroid hormone recept 60.5 37 0.00081 47.5 9.8 19 239-257 2065-2083(2220)
80 PF10446 DUF2457: Protein of u 60.1 5.9 0.00013 49.3 2.5 17 1622-1638 87-103 (458)
81 PRK00409 recombination and DNA 59.7 2.7E+02 0.0059 38.0 17.6 9 658-666 770-778 (782)
82 KOG2357 Uncharacterized conser 56.2 36 0.00077 42.5 8.0 9 143-151 188-196 (440)
83 PF05918 API5: Apoptosis inhib 54.7 4.1 8.8E-05 52.3 0.0 10 1368-1377 457-466 (556)
84 KOG1832 HIV-1 Vpr-binding prot 54.2 7 0.00015 51.8 1.9 22 102-126 45-66 (1516)
85 PF05914 RIB43A: RIB43A; Inte 53.5 5.6E+02 0.012 32.3 23.0 20 261-280 137-156 (379)
86 PF12128 DUF3584: Protein of u 52.2 9.4E+02 0.02 34.5 23.4 20 694-714 1018-1037(1201)
87 PF13868 Trichoplein: Tumour s 52.0 5.1E+02 0.011 31.3 23.6 16 393-408 319-334 (350)
88 KOG0161 Myosin class II heavy 51.9 7.9E+02 0.017 37.1 20.7 137 268-405 977-1133(1930)
89 KOG0577 Serine/threonine prote 51.7 7.6E+02 0.016 33.3 20.4 10 897-906 874-883 (948)
90 PF06637 PV-1: PV-1 protein (P 51.4 6.1E+02 0.013 32.1 22.2 13 268-280 155-167 (442)
91 PRK06568 F0F1 ATP synthase sub 51.4 3.8E+02 0.0083 29.8 15.9 13 290-302 34-46 (154)
92 PRK12705 hypothetical protein; 51.2 7E+02 0.015 32.7 22.6 11 622-632 372-382 (508)
93 PRK13428 F0F1 ATP synthase sub 51.1 2.2E+02 0.0048 36.2 14.0 23 436-458 149-171 (445)
94 PF06637 PV-1: PV-1 protein (P 49.3 3.6E+02 0.0079 33.9 14.6 9 39-47 3-11 (442)
95 KOG1832 HIV-1 Vpr-binding prot 48.9 12 0.00026 49.8 2.7 14 1514-1527 1367-1380(1516)
96 PRK12705 hypothetical protein; 48.3 7.7E+02 0.017 32.4 21.8 12 688-699 347-358 (508)
97 PRK06568 F0F1 ATP synthase sub 48.0 4.3E+02 0.0093 29.4 14.6 10 381-390 105-114 (154)
98 PRK04863 mukB cell division pr 47.0 1.1E+03 0.025 34.8 21.1 15 570-584 606-620 (1486)
99 KOG2507 Ubiquitin regulatory p 46.6 2E+02 0.0043 36.5 12.1 10 565-574 408-417 (506)
100 KOG3130 Uncharacterized conser 45.3 13 0.00028 45.8 2.1 43 1596-1638 263-307 (514)
101 TIGR02098 MJ0042_CXXC MJ0042 f 42.3 7.7 0.00017 32.4 -0.2 26 1222-1247 2-36 (38)
102 PRK09174 F0F1 ATP synthase sub 41.5 6.1E+02 0.013 29.2 16.5 11 290-300 83-93 (204)
103 KOG0681 Actin-related protein 41.3 3.2E+02 0.0069 35.9 13.0 10 691-700 592-601 (645)
104 PRK15103 paraquat-inducible me 41.1 18 0.0004 45.2 2.6 28 1219-1246 218-245 (419)
105 PRK11637 AmiB activator; Provi 41.0 8.4E+02 0.018 30.7 18.6 114 283-396 162-276 (428)
106 KOG2253 U1 snRNP complex, subu 41.0 4.5E+02 0.0097 35.2 14.4 32 74-105 36-67 (668)
107 KOG4246 Predicted DNA-binding 38.9 32 0.00068 45.8 4.2 45 78-131 80-124 (1194)
108 KOG2507 Ubiquitin regulatory p 38.8 62 0.0014 40.6 6.4 12 562-573 423-434 (506)
109 PF13719 zinc_ribbon_5: zinc-r 38.7 10 0.00023 32.1 0.0 25 1222-1246 2-35 (37)
110 PF13913 zf-C2HC_2: zinc-finge 38.4 9.1 0.0002 29.9 -0.3 23 1237-1263 3-25 (25)
111 COG5242 TFB4 RNA polymerase II 36.2 16 0.00035 42.2 1.0 32 1216-1247 254-285 (296)
112 PLN02316 synthase/transferase 35.6 1.1E+02 0.0023 42.8 8.5 23 657-679 601-623 (1036)
113 KOG2505 Ankyrin repeat protein 35.3 1.2E+02 0.0026 39.1 8.1 10 269-278 363-372 (591)
114 KOG0250 DNA repair protein RAD 35.1 1.6E+03 0.034 32.2 20.7 15 196-210 617-631 (1074)
115 KOG0112 Large RNA-binding prot 33.5 2.1E+02 0.0046 39.1 10.2 25 84-108 494-518 (975)
116 TIGR02680 conserved hypothetic 33.3 1.6E+03 0.035 32.8 19.5 31 549-582 488-518 (1353)
117 COG2995 PqiA Uncharacterized p 33.1 25 0.00054 43.6 2.0 42 1195-1243 200-242 (418)
118 KOG1103 Predicted coiled-coil 32.2 1.1E+03 0.024 29.5 18.5 30 865-896 489-518 (561)
119 KOG2038 CAATT-binding transcri 32.0 38 0.00081 45.1 3.3 23 874-896 496-518 (988)
120 PF04147 Nop14: Nop14-like fam 31.1 40 0.00087 45.8 3.6 13 1518-1530 252-264 (840)
121 TIGR00155 pqiA_fam integral me 30.7 34 0.00073 42.7 2.6 26 1221-1246 214-240 (403)
122 PRK02363 DNA-directed RNA poly 30.0 60 0.0013 34.9 4.0 74 651-730 8-84 (129)
123 KOG2505 Ankyrin repeat protein 30.0 2.3E+02 0.0049 36.7 9.2 11 104-114 178-188 (591)
124 KOG2253 U1 snRNP complex, subu 29.8 1.1E+03 0.023 32.0 15.2 27 69-95 64-90 (668)
125 KOG0943 Predicted ubiquitin-pr 29.5 28 0.0006 47.7 1.6 39 412-450 528-569 (3015)
126 KOG2668 Flotillins [Intracellu 29.5 1.2E+03 0.027 29.3 15.6 115 279-396 230-344 (428)
127 COG2268 Uncharacterized protei 28.8 1.5E+03 0.033 30.1 17.7 16 114-129 58-74 (548)
128 PF07888 CALCOCO1: Calcium bin 28.8 1.5E+03 0.033 30.1 23.8 32 383-414 427-458 (546)
129 KOG3598 Thyroid hormone recept 26.9 1.2E+02 0.0026 43.1 6.6 6 256-261 2074-2079(2220)
130 COG2433 Uncharacterized conser 26.8 1.2E+03 0.025 31.5 14.7 31 92-126 163-193 (652)
131 PF13717 zinc_ribbon_4: zinc-r 26.0 25 0.00053 29.9 0.2 25 1222-1246 2-35 (36)
132 PRK13428 F0F1 ATP synthase sub 25.7 1.5E+03 0.033 29.0 18.4 10 469-478 205-214 (445)
133 PF04747 DUF612: Protein of un 24.4 6.9E+02 0.015 31.6 11.6 11 337-347 123-133 (510)
134 PF09862 DUF2089: Protein of u 24.2 49 0.0011 34.9 2.0 28 1225-1252 1-29 (113)
135 PLN02316 synthase/transferase 24.2 1.7E+02 0.0036 41.1 7.4 9 556-566 514-522 (1036)
136 PLN02372 violaxanthin de-epoxi 24.1 1E+03 0.022 30.7 13.0 19 282-300 363-381 (455)
137 PF04931 DNA_pol_phi: DNA poly 23.7 44 0.00094 45.0 2.0 9 1302-1310 507-515 (784)
138 KOG3915 Transcription regulato 23.4 3.8E+02 0.0082 34.4 9.4 14 252-265 486-499 (641)
139 PF11208 DUF2992: Protein of u 23.2 3.5E+02 0.0076 29.4 8.1 6 189-194 28-33 (132)
140 KOG2441 mRNA splicing factor/p 22.4 2.3E+02 0.005 35.6 7.3 9 220-228 225-233 (506)
141 COG2433 Uncharacterized conser 22.2 1.3E+03 0.028 31.1 13.9 15 208-222 257-271 (652)
142 PLN02372 violaxanthin de-epoxi 21.4 1E+03 0.023 30.5 12.5 9 165-173 220-228 (455)
143 KOG0982 Centrosomal protein Nu 21.2 1.9E+03 0.041 28.5 23.2 33 471-503 441-475 (502)
144 smart00017 OSTEO Osteopontin. 20.9 84 0.0018 36.9 3.1 31 1562-1603 43-73 (287)
145 PF10168 Nup88: Nuclear pore c 20.6 2.3E+03 0.05 29.3 18.6 47 94-152 341-387 (717)
146 PF09538 FYDLN_acid: Protein o 20.4 50 0.0011 34.5 1.2 24 1224-1247 11-37 (108)
147 KOG0127 Nucleolar protein fibr 20.2 60 0.0013 41.8 2.0 7 1543-1549 190-196 (678)
No 1
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=9.2e-33 Score=338.94 Aligned_cols=276 Identities=13% Similarity=0.086 Sum_probs=199.3
Q ss_pred cccccCCCccCCCCceeeeccCCCCCCCCCceeEEEecCc--cEEEeCCHHHHHHHHHhcCcCchhHHHHHHHHHHHHHH
Q 000332 1037 VYRSLPLGQDRRRNRYWQFATSASRNDPCSGRIFVELHDG--TWRLIDTVEAFDALLSSLDARGTRESHLRIMLQKIETS 1114 (1651)
Q Consensus 1037 ~~R~~pLG~DR~~NRYW~F~~~~s~~d~g~grlfVE~~dg--~W~~ydt~eeLd~Ll~~Ld~rG~RE~~L~~~L~k~~~~ 1114 (1651)
.+|+.|+|.||+.+.|||+ ..||+||+.|+ .| ||+|.-+|..||..||. -+=|+.|...|....+.
T Consensus 409 ~iR~~~iG~dr~gr~ywfi----------~rrl~Ie~~det~l~-yysT~pqly~ll~cLd~-~~~e~~L~d~i~~~~ee 476 (1414)
T KOG1473|consen 409 SIRHTPIGRDRYGRKYWFI----------SRRLRIEGMDETLLW-YYSTCPQLYHLLRCLDR-TYVEMYLCDGIWERREE 476 (1414)
T ss_pred ceeccCCCcCccccchhce----------eeeeEEecCCCcEEE-EecCcHHHHHHHHHhch-HHHHHhhccchhhhHHH
Confidence 3699999999999999999 67999999888 77 99999999999999984 34688888888875555
Q ss_pred HHHHHHhhhccccccccchh--h--hhhhcccccCCCCC-----------CCCCCCCCCccCCCCCcccCccchhhhccc
Q 000332 1115 FKDKVRRNLQGIDTVGQSWT--A--IKNEAAEMDVDPDF-----------ASSDSPSSTVCGLNSDTLETSSSFRIELGR 1179 (1651)
Q Consensus 1115 i~~~m~kr~~~~~~~~~~~~--~--~~n~~~e~~~~~~~-----------~~~~sp~s~~~~~~~d~~~~s~s~~iElgr 1179 (1651)
|.. +|..|.....+.+ . -+.-.....+.-+| .+..=|-+.|.++. +...++-+-+++- =
T Consensus 477 ~~r----qM~lT~~ltne~R~~~~f~~~~h~r~~l~~~c~~~lv~~iq~~~da~l~e~~l~~i~-k~v~~~~S~s~~~-e 550 (1414)
T KOG1473|consen 477 IIR----QMGLTEELTNELRGAVDFGEDPHGRLFLGRDCAVLLVLCIQVVEDAILKEENLGDID-KVVLVLISASAHQ-E 550 (1414)
T ss_pred HHH----hccchhhhhhhhhcccccccCCCcceeeecchhhHHhhhhhhhhhhhhhHhhhcchH-hhhhhhhhcccch-H
Confidence 544 4444332221211 0 00000000000000 00000111111111 1111111111111 1
Q ss_pred chHHHHHHHHhHHHHHHHHHhhhcccccchhhccchhhhccccccchhhhcccccccCCCCccccccCCCCCCccccchh
Q 000332 1180 NEIEKKAALERFQDFQWWMWRECFNSLSLCASKNEKTRCRQLLVICDVCLDSYLCEDAHCPSCHRTFGAVDKSSKFSEHS 1259 (1651)
Q Consensus 1180 ~~~E~~~~~~R~q~f~kWmw~~~~~~~~l~a~k~GkKr~~~~l~~C~~c~~~y~~~e~hc~~CH~tf~~~dl~~~fs~h~ 1259 (1651)
.-.|...+.++|++.+ --|..+.+. .++.++++.| .+.+++.......+.+..++.-| +.++|++|+
T Consensus 551 E~~e~ck~is~~~d~p--~~n~~~~~e--~~~dqtf~~y--~ys~n~vse~~~~d~e~~dkk~~-------~~tkf~l~~ 617 (1414)
T KOG1473|consen 551 EYVEICKAISQYWDLP--EGNLWRLRE--EGNDQTFMKY--YYSGNEVSEIFLTDSENADKKSH-------MQTKFALIT 617 (1414)
T ss_pred HHHHHHHHHhhccccc--ccchhhhhh--cccccchhhh--cccCCchhhccCCchhhhccccc-------ccceecccc
Confidence 2345588899999998 777777777 8999999999 89999999999999999999999 789999999
Q ss_pred hhhhhhhhcCccccccCCCcchhHHHHHHHHHHHHHhcCChhhhhhhhhhhhhHHHHHhhcccCCHHHHHHHHHHHHhhh
Q 000332 1260 IQCEEKTKLGLRDIHVSDSSLPLGIRLLKPLSAVIEAYIPPEALEASWTDERRKTWGMKLNMSSSAEEVLQLLTILESGI 1339 (1651)
Q Consensus 1260 a~ce~K~~~~~~~~~~~~~~lp~~lr~LK~~L~~iEasiP~eAL~~~W~~~~RK~W~~~l~~ass~~EllqvL~~le~aI 1339 (1651)
+ ..++|.++--+++.. ...+.++..+|...++.||.++++..|... -|.|...|+.|.++.+|.-+|..+..++
T Consensus 618 n-sd~~~~g~~~t~gt~----~~~~~~~~~t~~~~lSniP~s~~n~~w~~~-tkg~~lavs~A~~~~el~s~t~~~d~s~ 691 (1414)
T KOG1473|consen 618 N-SDGVTAGNVTTYGTG----SQHKKLIARTLQQGLSNIPISYNNRKWPVY-TKGFELAVSAAADLAELSSETLEPDLSK 691 (1414)
T ss_pred c-ccceeccccccccch----hhcchHHHhhhhhhhccCchHhhhccchhh-ccchhhhhhccchHHHHHHhhcccchhh
Confidence 9 889888763355554 678889999999999999999999999887 9999999999999999999999999999
Q ss_pred cccccccccc
Q 000332 1340 KRSYLSSNFE 1349 (1651)
Q Consensus 1340 k~d~L~~~~~ 1349 (1651)
+..-..+.|+
T Consensus 692 ~~~~~~~~ss 701 (1414)
T KOG1473|consen 692 RSNAFKAASS 701 (1414)
T ss_pred hhhhhccchh
Confidence 9887777666
No 2
>PF02791 DDT: DDT domain; InterPro: IPR004022 This domain is predicted to be a DNA binding domain. The DDT domain is named after (DNA binding homeobox and Different Transcription factors). It is found in foetal Alzheimer antigen and several hypothetical and uncharacterised proteins.
Probab=99.34 E-value=1.7e-12 Score=117.75 Aligned_cols=60 Identities=57% Similarity=0.920 Sum_probs=55.7
Q ss_pred chhhhhHHHHHHHHHHhhhhccccCCCHHHHHHHHhccCcc-hHHHHHHHHHHHHHhchhh
Q 000332 464 EENVGNLLMVWRFFITFADVLGLWPFTLDEFVQAFHDHESR-LLGEIHLALLKSIIKDIED 523 (1651)
Q Consensus 464 ~e~vgdLLmVweFL~sF~~vL~LspFTLddf~qAL~~~dS~-LL~EIHvaLLk~llkd~Ed 523 (1651)
+++|+++||||+||++|+++|+|+||||++|++||.+.++. +|.+||++||++|+++.+|
T Consensus 1 ~~~~~~~L~v~~Fl~~F~~~L~L~~ftlddf~~AL~~~~~~~ll~ei~~~LL~~l~~~~~d 61 (61)
T PF02791_consen 1 GEAFGDLLMVWEFLNTFGEVLGLSPFTLDDFEQALLCNDPSGLLAEIHCALLKALLADEED 61 (61)
T ss_pred CcHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHcCCCcchhHHHHHHHHHHHHHhccCC
Confidence 36899999999999999999999999999999999986665 9999999999999999764
No 3
>smart00571 DDT domain in different transcription and chromosome remodeling factors.
Probab=99.30 E-value=3.4e-12 Score=116.64 Aligned_cols=59 Identities=44% Similarity=0.835 Sum_probs=55.2
Q ss_pred chhhhhHHHHHHHHHHhhhhccccCCC--HHHHHHHHhccCcc-hHHHHHHHHHHHHHhchh
Q 000332 464 EENVGNLLMVWRFFITFADVLGLWPFT--LDEFVQAFHDHESR-LLGEIHLALLKSIIKDIE 522 (1651)
Q Consensus 464 ~e~vgdLLmVweFL~sF~~vL~LspFT--Lddf~qAL~~~dS~-LL~EIHvaLLk~llkd~E 522 (1651)
++.|||+||||+||++|+++|+|+||+ |++|++||.+.+++ +|.+||+.||++++++++
T Consensus 1 ~~~~~d~l~V~eFl~~F~~~L~L~~f~~~l~~f~~Al~~~~~~~ll~ei~~~LL~~i~~d~~ 62 (63)
T smart00571 1 NEAFGDLLMVYEFLRSFGKVLGLSPFRATLEDFIAALKCRDQNGLLTEVHVVLLRAILKDEG 62 (63)
T ss_pred CcHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHhcCCcchHHHHHHHHHHHHHHhCCC
Confidence 367999999999999999999999999 99999999987765 999999999999999865
No 4
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.01 E-value=3e-09 Score=141.79 Aligned_cols=241 Identities=22% Similarity=0.197 Sum_probs=128.9
Q ss_pred cchHHhhhhccccccCCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHH---HHHH-HHHHhHh---hhhhhhhc
Q 000332 856 GESWIQGLAEGDYSHLSVEERLNALVALIGIANEGNSIRAVLEDRLEAANALKK---QMWA-EAQLDKS---RLKEENIT 928 (1651)
Q Consensus 856 GE~wl~~L~~g~Y~~LsveeKL~iL~~Lv~~ll~~ssVR~~IderlEqa~aLrk---qkw~-ea~ldKr---r~keE~~~ 928 (1651)
++..+..|.+..|.+|..++|+.||..||+.++++..++.+|+.+..+...|++ ++|. +.+. |+ ....+...
T Consensus 650 ~~~~~~kl~~~~v~dl~~~~~~~il~~~~~~l~~~~e~~d~i~~~~~~~~eLk~~~~~~~~~e~~a-~~~~~~n~~e~~~ 728 (1404)
T KOG1245|consen 650 HEELMEKLHTLLVFDLRAEEKDKILRQLCQRLLMLGEVVDHIEDRQQLTRELKQEITEKEKEENKA-KSALEENRSESDK 728 (1404)
T ss_pred hhhhhhhHHHHHHHhhhhhhhhhHHHHHHHHhccchhhhhhhhhHHHHHHHHhhhhhhhchHhHHh-hhhHHhhHHHHHH
Confidence 677889999999999999999999999999999999999999984422222222 2222 1111 11 11122222
Q ss_pred cccc-CcccCCchhhhhccccccCCCCCCccccCCCCCCCCCcccccCCccCccccccCCCCCCccccccccCCCCCccc
Q 000332 929 KLDF-TPAMGSKAETHLASSAAEGGQSPLPVFVDNKNEASPSLAEDQKPMFGSQVFQNHLSEFPNERTVAVQDPSTGLDN 1007 (1651)
Q Consensus 929 k~~~-~~~~G~k~e~~~~~~a~e~~~~p~~~~~~~~~g~~p~~~~~~~~~~~~~s~~~n~~~~~~e~~~~~qd~~~~p~~ 1007 (1651)
++.. ....|..-..... -+. .+..+--+......+.. ........ | ....-+.++-+.+...
T Consensus 729 ~l~~~~~~~g~~~rk~~~-~~~----e~~~~~~~~d~i~~~~~---~~~~~~~~-~--------~~~~~~~~~~~~~~~~ 791 (1404)
T KOG1245|consen 729 ELDEVWNVEGKLDRKTEK-KAP----ESDLDTENEDHIKAEKE---KRREDEEE-F--------KGFTRVEQEREESDEL 791 (1404)
T ss_pred hhhhhhcccccccccccc-ccc----chhhcccchhhhcchhh---hhhhhhhh-h--------cccccccccccccchh
Confidence 2221 0011111111000 000 00000000000000000 00000000 0 0001112222223333
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccCCCccCCCCceeeeccCCCCCCCCCceeEEEe--------------
Q 000332 1008 LATQQHGYASKRSRSQLKAYIAHMAEEMYVYRSLPLGQDRRRNRYWQFATSASRNDPCSGRIFVEL-------------- 1073 (1651)
Q Consensus 1008 ~s~~~~~~~aeksrsQ~k~~i~~~aEe~~~~R~~pLG~DR~~NRYW~F~~~~s~~d~g~grlfVE~-------------- 1073 (1651)
.+....+...++.+.+...+.........++|..|||+||+|||||||... .+.+|+|.
T Consensus 792 ~~~~e~~~~~~~~~~~~~~~~eki~~~~~~~r~~~lG~DR~~rRYwvl~~~-------~~~~~ie~i~~~~~~~~~~~~~ 864 (1404)
T KOG1245|consen 792 ESIVEEERSIEEKRWAKIAFAEKILKASLVLRLNPLGKDRNYRRYWVLPDL-------VSGLFIEEIAKKEEIDYKCNGN 864 (1404)
T ss_pred hhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhhccccccchhhceeeeeecc-------CcccchhHHhhhccccccchhh
Confidence 333333333333333333444456667789999999999999999999842 23344441
Q ss_pred -----------------------------cC--------ccEEEeCCHHHHHHHHHhcCcCchhHHHHHHHHHHHHHHHH
Q 000332 1074 -----------------------------HD--------GTWRLIDTVEAFDALLSSLDARGTRESHLRIMLQKIETSFK 1116 (1651)
Q Consensus 1074 -----------------------------~d--------g~W~~ydt~eeLd~Ll~~Ld~rG~RE~~L~~~L~k~~~~i~ 1116 (1651)
.+ ..|.++++-++++.|+..++++|+||..|...| -+...+.
T Consensus 865 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~gt~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~g~~e~~lse~l-~~~~~L~ 943 (1404)
T KOG1245|consen 865 EDDEKASEDREYSLEASNTTNAAMNLQNGTDQKTPKTKQTRWFLVSIQEQEKELLYTLNPRGILESILSEGL-WLERSLI 943 (1404)
T ss_pred hhhcccchhhcccccccchhhhhhcccccccccCCcchhhhHHHHHhhHHHHhhhhhcCccchHHHHHhhhh-hhhhHHH
Confidence 01 179999999999999999999999999999988 3333444
Q ss_pred HHHHhh
Q 000332 1117 DKVRRN 1122 (1651)
Q Consensus 1117 ~~m~kr 1122 (1651)
......
T Consensus 944 ~~~~~~ 949 (1404)
T KOG1245|consen 944 EIYDEK 949 (1404)
T ss_pred HHHHHH
Confidence 444333
No 5
>PF15613 WHIM2: WSTF, HB1, Itc1p, MBD9 motif 2
Probab=98.96 E-value=5.3e-10 Score=93.14 Aligned_cols=37 Identities=46% Similarity=0.744 Sum_probs=31.5
Q ss_pred cccCCCccCCCCceeeeccCCCCCCCCCceeEEEecC
Q 000332 1039 RSLPLGQDRRRNRYWQFATSASRNDPCSGRIFVELHD 1075 (1651)
Q Consensus 1039 R~~pLG~DR~~NRYW~F~~~~s~~d~g~grlfVE~~d 1075 (1651)
|..|||+||++||||||..+.....+++++||||..+
T Consensus 1 R~~pLG~DR~~NrYwwf~~s~~~~~~~~~~~~v~~~~ 37 (38)
T PF15613_consen 1 RLKPLGKDRYGNRYWWFSSSSSNSQYYNGGRFVEQGP 37 (38)
T ss_pred CcccccccCCCceEEEEecccccCCCCCceEEEEeCC
Confidence 7899999999999999976655566778999999765
No 6
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [].P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].
Probab=98.72 E-value=2.6e-06 Score=95.04 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=15.1
Q ss_pred cccccCCCCcCCCCcccc
Q 000332 434 LDSFRDSLSVFPPKTVRL 451 (1651)
Q Consensus 434 l~~~Rd~Lp~fPp~~V~L 451 (1651)
.++++.|||||..++|.|
T Consensus 199 ~~~~~~f~pF~~k~~~~l 216 (216)
T PF11600_consen 199 SDYEKKFLPFFVKDDMRL 216 (216)
T ss_pred chhhccccCceecCCccC
Confidence 566778999999999875
No 7
>PF15614 WHIM3: WSTF, HB1, Itc1p, MBD9 motif 3
Probab=98.68 E-value=1.6e-08 Score=87.47 Aligned_cols=35 Identities=43% Similarity=0.694 Sum_probs=34.3
Q ss_pred EEEeCCHHHHHHHHHhc-CcCchhHHHHHHHHHHHH
Q 000332 1078 WRLIDTVEAFDALLSSL-DARGTRESHLRIMLQKIE 1112 (1651)
Q Consensus 1078 W~~ydt~eeLd~Ll~~L-d~rG~RE~~L~~~L~k~~ 1112 (1651)
|+||+++++||+|+.|| ||+|+||++|+++|.+++
T Consensus 1 W~~~~~~e~ld~L~~aL~~prG~RE~~L~~~L~~~~ 36 (46)
T PF15614_consen 1 WGYYDDPEELDELLKALENPRGKRESKLKKELDKHR 36 (46)
T ss_pred CccccCHHHHHHHHHHHcCcccHhHHHHHHHHHHHh
Confidence 99999999999999999 999999999999999987
No 8
>PF05066 HARE-HTH: HB1, ASXL, restriction endonuclease HTH domain; InterPro: IPR007759 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. The delta protein is a dispensable subunit of Bacillus subtilis RNA polymerase (RNAP) that has major effects on the biochemical properties of the purified enzyme. In the presence of delta, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling []. The delta protein, contains two distinct regions, an N-terminal domain and a glutamate and aspartate residue-rich C-terminal region [].; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent; PDB: 2KRC_A.
Probab=98.35 E-value=3.1e-07 Score=85.59 Aligned_cols=67 Identities=37% Similarity=0.543 Sum_probs=55.6
Q ss_pred CchhHHHHHHHhhcCCCCccHHHHHHHhhhhccccCCCCCCcchhhHHhhccccc----hheeccCcceeecc
Q 000332 646 GTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLRDLTTSKTPEASISVALTRDTK----LFERIAPSTYCVRP 714 (1651)
Q Consensus 646 gT~K~~~f~vls~~G~~gl~v~ela~~~q~~~l~~~~tsk~pe~~i~~~ls~D~~----Lferiapsty~lr~ 714 (1651)
+|++-+|++||...| ..|++.||++.|+..||.... +|+|+++|++.|.+|++ .|.++.|++|+||.
T Consensus 1 mt~~eaa~~vL~~~~-~pm~~~eI~~~i~~~~~~~~~-~k~p~~~i~a~ly~~~~~~d~~F~~vg~~~~~L~~ 71 (72)
T PF05066_consen 1 MTFKEAAYEVLEEAG-RPMTFKEIWEEIQERGLYKKS-GKTPEATIAAQLYTDIKNEDSRFVKVGPGRWGLRS 71 (72)
T ss_dssp S-HHHHHHHHHHHH--S-EEHHHHHHHHHHHHTS----GGGGGHHHH-HHHHHHH-T-SS-EESSSSEEE-GG
T ss_pred CCHHHHHHHHHHhcC-CCcCHHHHHHHHHHhCCCCcc-cCCHHHHHHHHHHHHcccCCCCEEEeCCCcEEeee
Confidence 588999999999999 999999999999999998877 99999999999999998 99999999999983
No 9
>PTZ00121 MAEBL; Provisional
Probab=98.28 E-value=4.1e-05 Score=99.88 Aligned_cols=11 Identities=27% Similarity=0.748 Sum_probs=4.7
Q ss_pred ccchhhhhhhh
Q 000332 1255 FSEHSIQCEEK 1265 (1651)
Q Consensus 1255 fs~h~a~ce~K 1265 (1651)
|..+.-.|=-|
T Consensus 2001 F~dp~Y~CF~K 2011 (2084)
T PTZ00121 2001 FADKDYKCFKK 2011 (2084)
T ss_pred ccCcchhhhcc
Confidence 44444444333
No 10
>PTZ00121 MAEBL; Provisional
Probab=98.24 E-value=5.7e-05 Score=98.61 Aligned_cols=12 Identities=8% Similarity=0.147 Sum_probs=7.7
Q ss_pred hhhhhhhhcCcc
Q 000332 1260 IQCEEKTKLGLR 1271 (1651)
Q Consensus 1260 a~ce~K~~~~~~ 1271 (1651)
-.|.-+.-.||.
T Consensus 1994 ynCmk~EF~dp~ 2005 (2084)
T PTZ00121 1994 YDCMKEEFADKD 2005 (2084)
T ss_pred HhhHHhhccCcc
Confidence 347777766665
No 11
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=98.20 E-value=5.6e-05 Score=93.30 Aligned_cols=29 Identities=28% Similarity=0.350 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000332 336 RQREEERSLREQKREMERREKFLQKEYLR 364 (1651)
Q Consensus 336 k~kEEER~~rEqrrEeER~eKe~ekE~~r 364 (1651)
.+++-|++++++++|+|+.+|++++++++
T Consensus 308 qqkekEkeEKrrKdE~Ek~kKqeek~KR~ 336 (811)
T KOG4364|consen 308 QQKEKEKEEKRRKDEQEKLKKQEEKQKRA 336 (811)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 34444445555555556665555554443
No 12
>PF15612 WHIM1: WSTF, HB1, Itc1p, MBD9 motif 1; PDB: 2Y9Z_B 2Y9Y_B.
Probab=98.19 E-value=1.5e-06 Score=76.04 Aligned_cols=48 Identities=33% Similarity=0.414 Sum_probs=41.1
Q ss_pred chHHhhhhccccccCCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Q 000332 857 ESWIQGLAEGDYSHLSVEERLNALVALIGIANEGNSIRAVLEDRLEAA 904 (1651)
Q Consensus 857 E~wl~~L~~g~Y~~LsveeKL~iL~~Lv~~ll~~ssVR~~IderlEqa 904 (1651)
+.|+..|.++.|..|++++||.||.+||+.++++..||++|+++.|++
T Consensus 3 ~~~~~~l~~~~y~~L~~~~kl~iL~~L~~~~l~s~~vr~~i~~~~e~~ 50 (50)
T PF15612_consen 3 PGLAPPLETGEYYELSPEEKLEILRALCDQLLSSSSVRNEIEEREEEQ 50 (50)
T ss_dssp GGG-CCCCCSTCCCS-HHHHHHHHHHHHHHHCC-CCHHHHHHHHHT--
T ss_pred hhhhHHHHcCCcccCCHHHHHHHHHHHHHHHcCcHHHHHHHHHhhccC
Confidence 467889999999999999999999999999999999999999998863
No 13
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=98.14 E-value=6.7e-05 Score=98.92 Aligned_cols=13 Identities=15% Similarity=0.003 Sum_probs=7.4
Q ss_pred HHHHHHHHHhCCC
Q 000332 93 RAIACVEAQLGEP 105 (1651)
Q Consensus 93 ~~i~~~~~q~g~~ 105 (1651)
-+++++|--.|.+
T Consensus 229 LG~ILYELLTGk~ 241 (1021)
T PTZ00266 229 LGCIIYELCSGKT 241 (1021)
T ss_pred HHHHHHHHHHCCC
Confidence 4555566666653
No 14
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [].P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].
Probab=98.06 E-value=0.00026 Score=79.35 Aligned_cols=19 Identities=42% Similarity=0.419 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000332 370 LKEELRMEKQAAKRKVAIE 388 (1651)
Q Consensus 370 ~kEEeRr~KEeerekaeeE 388 (1651)
++++++++|++++++.+++
T Consensus 154 ~k~eek~~keeekr~~eE~ 172 (216)
T PF11600_consen 154 AKEEEKRKKEEEKRKKEEE 172 (216)
T ss_pred hHHHHHHHHHHHHHhhHHH
Confidence 3444444455555444433
No 15
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=97.97 E-value=0.00027 Score=87.62 Aligned_cols=12 Identities=8% Similarity=-0.061 Sum_probs=7.3
Q ss_pred hhHHHHHHHhhc
Q 000332 648 VKFAAFHVLSLE 659 (1651)
Q Consensus 648 ~K~~~f~vls~~ 659 (1651)
+|+-+||.--+.
T Consensus 479 mKaKlLqF~~Nr 490 (811)
T KOG4364|consen 479 MKAKLLQFDKNR 490 (811)
T ss_pred hHHHHhhhcccc
Confidence 676677665443
No 16
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=97.95 E-value=8.3e-05 Score=98.06 Aligned_cols=8 Identities=38% Similarity=0.920 Sum_probs=3.7
Q ss_pred cCCCCccH
Q 000332 659 EGSKGLTV 666 (1651)
Q Consensus 659 ~G~~gl~v 666 (1651)
.|+.||.|
T Consensus 721 ~~~~~~~~ 728 (1021)
T PTZ00266 721 KGNTGMNV 728 (1021)
T ss_pred cCCCccee
Confidence 34555444
No 17
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.0004 Score=87.00 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=19.7
Q ss_pred cccCCCcch-HHhhhhccccccCCH
Q 000332 850 IDESKPGES-WIQGLAEGDYSHLSV 873 (1651)
Q Consensus 850 ides~~GE~-wl~~L~~g~Y~~Lsv 873 (1651)
+++++.||| ||.|=..|.++=.+-
T Consensus 720 V~esq~aEPGWlaGel~gktGWFPe 744 (1118)
T KOG1029|consen 720 VFESQAAEPGWLAGELRGKTGWFPE 744 (1118)
T ss_pred EehhccCCcccccceeccccCcCcH
Confidence 488999998 899988888887763
No 18
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=0.0013 Score=82.79 Aligned_cols=20 Identities=40% Similarity=0.556 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000332 312 ERMRKEMEKHERERRKEEER 331 (1651)
Q Consensus 312 Er~rKE~Ek~eRE~rkeEEr 331 (1651)
|..+|++|++|.|++++.|.
T Consensus 354 E~ekkererqEqErk~qlEl 373 (1118)
T KOG1029|consen 354 EEEKKERERQEQERKAQLEL 373 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555444
No 19
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=97.73 E-value=0.0025 Score=72.78 Aligned_cols=20 Identities=30% Similarity=0.574 Sum_probs=13.5
Q ss_pred HHHHHHhhhHHHHHHHHHHH
Q 000332 272 QRMEKKRKCDEARIAREVEA 291 (1651)
Q Consensus 272 ~rlErkrk~eeeRl~rE~E~ 291 (1651)
.+.|++|+.+-+|+.+|.++
T Consensus 277 kraeerrqieterlrqeeee 296 (445)
T KOG2891|consen 277 KRAEERRQIETERLRQEEEE 296 (445)
T ss_pred HHHHHHhhhhHHHHhhhHhh
Confidence 45566667788887776655
No 20
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=97.43 E-value=0.015 Score=63.46 Aligned_cols=38 Identities=29% Similarity=0.290 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 000332 375 RMEKQAAKRKVAIEKATARKMAKESMDLIEDEQLELMD 412 (1651)
Q Consensus 375 Rr~KEeerekaeeEka~~rreAkE~aeliedErLEl~E 412 (1651)
.++|++++.++.++..+.+.+..+.+..+.+|+|+..+
T Consensus 109 ~kQkeeae~ka~EeAek~r~ErE~~~~q~eqERleRKK 146 (171)
T PF05672_consen 109 QKQKEEAEAKAREEAEKQRKERERIMQQEEQERLERKK 146 (171)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666677777777775333
No 21
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=97.04 E-value=0.024 Score=65.17 Aligned_cols=28 Identities=32% Similarity=0.375 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000332 359 QKEYLRAEKRRLKEELRMEKQAAKRKVA 386 (1651)
Q Consensus 359 ekE~~r~Ek~r~kEEeRr~KEeerekae 386 (1651)
++.+.|+|++++|++++.+.|+.+-+.-
T Consensus 385 ekieareerrkqkeeeklk~e~qkikel 412 (445)
T KOG2891|consen 385 EKIEAREERRKQKEEEKLKAEEQKIKEL 412 (445)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3444555555556555555555544433
No 22
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=96.78 E-value=0.067 Score=65.12 Aligned_cols=11 Identities=0% Similarity=0.030 Sum_probs=4.6
Q ss_pred cHHHHHHHHHH
Q 000332 571 TWHEIFRQLAL 581 (1651)
Q Consensus 571 TWPEILRq~ll 581 (1651)
.|.-++|..|.
T Consensus 304 ~Y~a~Ira~Iq 314 (387)
T PRK09510 304 QYAGQIKSAIQ 314 (387)
T ss_pred hHHHHHHHHHH
Confidence 34444444443
No 23
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=96.43 E-value=0.053 Score=69.27 Aligned_cols=20 Identities=25% Similarity=0.233 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000332 352 ERREKFLQKEYLRAEKRRLK 371 (1651)
Q Consensus 352 ER~eKe~ekE~~r~Ek~r~k 371 (1651)
|+++++++.+++++|.++++
T Consensus 239 E~~r~eeEEer~~ee~E~~~ 258 (1064)
T KOG1144|consen 239 ERLRREEEEERRREEEEAQE 258 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444333
No 24
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=96.38 E-value=0.13 Score=64.43 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=16.5
Q ss_pred cchhhHHHHHHHHHHHHHhCCCcccc
Q 000332 84 ESQQSIMELRAIACVEAQLGEPLRED 109 (1651)
Q Consensus 84 ~~~~~~~~~~~i~~~~~q~g~~~~~d 109 (1651)
.|.-.+--.+.|.-+=.-||+.|..+
T Consensus 18 gp~~~~~t~~~i~~iG~~la~~~~~~ 43 (489)
T PF05262_consen 18 GPHASIETAQQIRGIGSGLAEALKNG 43 (489)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHhcC
Confidence 34333333478888888888877753
No 25
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=95.78 E-value=0.19 Score=64.14 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=15.5
Q ss_pred hccccCCCHHHHHHHHhc-cCcchHH
Q 000332 483 VLGLWPFTLDEFVQAFHD-HESRLLG 507 (1651)
Q Consensus 483 vL~LspFTLddf~qAL~~-~dS~LL~ 507 (1651)
..+|+...+.+|-.++.. -|-+||.
T Consensus 1064 KYDl~~wkyaeLRDtINTS~DieLL~ 1089 (1259)
T KOG0163|consen 1064 KYDLSKWKYAELRDTINTSCDIELLE 1089 (1259)
T ss_pred ccccccccHHHHHHhhcccccHHHHH
Confidence 346667777777777763 3445554
No 26
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=95.54 E-value=1.3 Score=48.41 Aligned_cols=11 Identities=73% Similarity=1.026 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 000332 328 EEERLMRERQR 338 (1651)
Q Consensus 328 eEEr~erEk~k 338 (1651)
+++|..+++..
T Consensus 88 EE~Rl~rere~ 98 (157)
T PF15236_consen 88 EEERLAREREE 98 (157)
T ss_pred HHHHHHHHHHH
Confidence 33344344333
No 27
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=95.51 E-value=1.4 Score=57.42 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=13.0
Q ss_pred CCCccccCCccccccccCCC
Q 000332 103 GEPLREDGPILGMEFDSLPP 122 (1651)
Q Consensus 103 g~~~~~d~p~~g~~fd~~p~ 122 (1651)
+..+++==.+|.++|+||.-
T Consensus 386 ~qe~kdLY~iLEveF~PL~l 405 (988)
T KOG2072|consen 386 DQEVKDLYNILEVEFHPLKL 405 (988)
T ss_pred hHHHHHHHHHHHhcCCHHHH
Confidence 33344444678899999863
No 28
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=95.47 E-value=0.079 Score=67.78 Aligned_cols=28 Identities=25% Similarity=0.139 Sum_probs=17.0
Q ss_pred ccCCCchhHHHHHHHhhcCCCCccHHHH
Q 000332 642 KLTPGTVKFAAFHVLSLEGSKGLTVLEL 669 (1651)
Q Consensus 642 rl~~gT~K~~~f~vls~~G~~gl~v~el 669 (1651)
=|..-|-..+.|.-|-..|+.=|.++=|
T Consensus 542 ~lvIdtpghEsFtnlRsrgsslC~~aIl 569 (1064)
T KOG1144|consen 542 LLVIDTPGHESFTNLRSRGSSLCDLAIL 569 (1064)
T ss_pred eEEecCCCchhhhhhhhccccccceEEE
Confidence 3444444577777777777766655433
No 29
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=95.37 E-value=0.76 Score=54.39 Aligned_cols=12 Identities=17% Similarity=0.216 Sum_probs=4.9
Q ss_pred HHHHHHHHHhCC
Q 000332 574 EIFRQLALSAGF 585 (1651)
Q Consensus 574 EILRq~llsaG~ 585 (1651)
+|-|.|+....|
T Consensus 312 ~Iq~rfl~~~sf 323 (387)
T COG3064 312 AIQSRFLDADSF 323 (387)
T ss_pred HHHHHHhccccc
Confidence 344444444333
No 30
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=95.22 E-value=0.54 Score=60.34 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=9.7
Q ss_pred hhccCCCccHHHHHHHHHHH
Q 000332 563 WQQLLNPLTWHEIFRQLALS 582 (1651)
Q Consensus 563 w~~~LdslTWPEILRq~lls 582 (1651)
|-.|.|. +=|-||.-+-
T Consensus 1172 WyaHFdG---q~I~RQm~l~ 1188 (1259)
T KOG0163|consen 1172 WYAHFDG---QWIARQMELH 1188 (1259)
T ss_pred EEEecCc---HHHHhhheec
Confidence 5566654 4467776443
No 31
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=95.07 E-value=1.8 Score=47.96 Aligned_cols=31 Identities=19% Similarity=0.186 Sum_probs=13.8
Q ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 000332 269 DAEQRMEKKRKCDEARIAREVEANEIRIQKEL 300 (1651)
Q Consensus 269 ke~~rlErkrk~eeeRl~rE~E~~e~r~~kE~ 300 (1651)
++..++--.+ .-.+|.++++++++.+.+.|.
T Consensus 22 EEAtkiLAEk-RRlAReQkErEE~ER~ekEE~ 52 (171)
T PF05672_consen 22 EEATKILAEK-RRLAREQKEREEQERLEKEEQ 52 (171)
T ss_pred HHHHHHHHHH-HHHHHHHhhhHHHHHHHHHHH
Confidence 4555554332 223455555554444433333
No 32
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.05 E-value=0.17 Score=57.76 Aligned_cols=24 Identities=13% Similarity=0.314 Sum_probs=10.8
Q ss_pred HHHHhhhhcccc-CCCHHHHHHHHh
Q 000332 476 FFITFADVLGLW-PFTLDEFVQAFH 499 (1651)
Q Consensus 476 FL~sF~~vL~Ls-pFTLddf~qAL~ 499 (1651)
||.-|-+.+.-. -..|+||..++.
T Consensus 201 ll~eFv~YIk~nKvV~ledLas~f~ 225 (299)
T KOG3054|consen 201 LLSEFVEYIKKNKVVPLEDLASEFG 225 (299)
T ss_pred HHHHHHHHHHhcCeeeHHHHHHHhC
Confidence 333444444332 335566555554
No 33
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=95.05 E-value=0.34 Score=60.59 Aligned_cols=13 Identities=8% Similarity=0.089 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhhh
Q 000332 470 LLMVWRFFITFAD 482 (1651)
Q Consensus 470 LLmVweFL~sF~~ 482 (1651)
|..+.+-|.+|..
T Consensus 357 L~qI~dkl~s~~~ 369 (591)
T KOG2412|consen 357 LRQIFDKLDSLFG 369 (591)
T ss_pred HHHHHHHHHHHhc
Confidence 5556666666433
No 34
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=95.00 E-value=2 Score=51.10 Aligned_cols=11 Identities=45% Similarity=0.347 Sum_probs=5.4
Q ss_pred HHHHHHHHHHh
Q 000332 573 HEIFRQLALSA 583 (1651)
Q Consensus 573 PEILRq~llsa 583 (1651)
+--|+|-.+++
T Consensus 349 d~~lCqAalsA 359 (387)
T COG3064 349 DPALCQAALSA 359 (387)
T ss_pred ChHHHHHHHHH
Confidence 34455555543
No 35
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=94.70 E-value=2.7 Score=49.30 Aligned_cols=8 Identities=13% Similarity=0.131 Sum_probs=3.9
Q ss_pred HHhcCCCC
Q 000332 414 AAASKGLS 421 (1651)
Q Consensus 414 aA~sK~lp 421 (1651)
...++|+|
T Consensus 234 ~~kpkpvp 241 (264)
T PF13904_consen 234 KNKPKPVP 241 (264)
T ss_pred ccCCCCCC
Confidence 33455555
No 36
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=94.65 E-value=0.32 Score=60.76 Aligned_cols=16 Identities=31% Similarity=0.557 Sum_probs=9.2
Q ss_pred cHHHHHHHHHHHhCCC
Q 000332 571 TWHEIFRQLALSAGFG 586 (1651)
Q Consensus 571 TWPEILRq~llsaG~g 586 (1651)
|--.||=.||..+||+
T Consensus 521 ~tatll~s~Lq~aG~~ 536 (591)
T KOG2412|consen 521 TTATLLNSFLQTAGFG 536 (591)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 5555666666666643
No 37
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=93.90 E-value=3.1 Score=48.71 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=19.8
Q ss_pred HHHHHHHhcCCCCcccccChhhhccccc-ccCCC
Q 000332 409 ELMDLAAASKGLSSIIHLDLETLQNLDS-FRDSL 441 (1651)
Q Consensus 409 El~ELaA~sK~lpS~~~lD~Etlqnl~~-~Rd~L 441 (1651)
.+.+=...++.-|-++.+. ||+++ .|++.
T Consensus 225 A~~~Wl~~~~~kpkpvp~~----~G~~s~Lrgt~ 254 (264)
T PF13904_consen 225 AFQKWLKNVKNKPKPVPLN----QGYDSTLRGTY 254 (264)
T ss_pred HHHHHHHHcccCCCCCCcC----CCCCccccCcC
Confidence 4555678899998888765 66665 55544
No 38
>PRK12704 phosphodiesterase; Provisional
Probab=91.16 E-value=32 Score=44.27 Aligned_cols=15 Identities=20% Similarity=0.441 Sum_probs=10.8
Q ss_pred cccCCCHHHHHHHHh
Q 000332 485 GLWPFTLDEFVQAFH 499 (1651)
Q Consensus 485 ~LspFTLddf~qAL~ 499 (1651)
.+.|+..++++....
T Consensus 278 ~i~P~~iee~~~~~~ 292 (520)
T PRK12704 278 RIHPARIEEMVEKAR 292 (520)
T ss_pred CcCCCCHHHHHHHHH
Confidence 466888887777665
No 39
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=90.67 E-value=69 Score=42.20 Aligned_cols=82 Identities=18% Similarity=0.256 Sum_probs=42.6
Q ss_pred cccCCCCcccccCCCCCCCcccc-ccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHhhhHHHHHHHHH
Q 000332 211 LSQQDKPAHIFSSPNGGEDSLLQ-RESTSNNRKNAQSTSHPIFGTEDPYLLSDGQTFNNDAEQRMEKKRKCDEARIAREV 289 (1651)
Q Consensus 211 ~~q~~~~~~~~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~P~~~s~~~~~~dke~~rlErkrk~eeeRl~rE~ 289 (1651)
|+-+-..|.+-|.|.+.+..... ..-|.--|++....-+.|.+-.+ ..+++++=+-|+.-++..+++|+.
T Consensus 736 ls~~K~~gsvs~~~~~~~kktlKkTRkf~vDGVeVs~TTski~~~~d---------~k~eemrflRrQeLreLR~LQkeE 806 (1187)
T KOG0579|consen 736 LSVQKTNGSVSPRPLGGRKKTLKKTRKFMVDGVEVSSTTSKILGVKD---------DKDEEMRFLRRQELRELRRLQKEE 806 (1187)
T ss_pred cccccccCccccCCccchhhHHHhhhheeecceEEEEeeeeeeeccc---------cchHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777754433 33345556666665565553221 123333333333333555566666
Q ss_pred HHHHHHHHHHHH
Q 000332 290 EANEIRIQKELE 301 (1651)
Q Consensus 290 E~~e~r~~kE~E 301 (1651)
.+++.++.-+..
T Consensus 807 ~R~qqqL~~k~~ 818 (1187)
T KOG0579|consen 807 ARQQQQLQAKGI 818 (1187)
T ss_pred HHHHHHHHHHHH
Confidence 665555444333
No 40
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.24 E-value=43 Score=42.05 Aligned_cols=19 Identities=0% Similarity=0.057 Sum_probs=10.1
Q ss_pred HhcchhhHHHHHHHHHHHH
Q 000332 887 ANEGNSIRAVLEDRLEAAN 905 (1651)
Q Consensus 887 ll~~ssVR~~IderlEqa~ 905 (1651)
+|+...+++.++..|++-+
T Consensus 599 vLd~~lf~e~v~ykv~eHq 617 (630)
T KOG0742|consen 599 VLDEALFDERVDYKVQEHQ 617 (630)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 4444555555555555543
No 41
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=89.24 E-value=3.5 Score=55.04 Aligned_cols=10 Identities=40% Similarity=0.694 Sum_probs=4.3
Q ss_pred cccccCCCCC
Q 000332 115 MEFDSLPPDA 124 (1651)
Q Consensus 115 ~~fd~~p~~a 124 (1651)
+.+|-.-|.+
T Consensus 557 l~~d~~np~a 566 (1018)
T KOG2002|consen 557 LNIDSSNPNA 566 (1018)
T ss_pred HhcccCCcHH
Confidence 4444444443
No 42
>PRK00106 hypothetical protein; Provisional
Probab=88.91 E-value=37 Score=43.96 Aligned_cols=11 Identities=18% Similarity=0.259 Sum_probs=5.0
Q ss_pred hHHHHHHHHhc
Q 000332 622 ENAFAWMREKG 632 (1651)
Q Consensus 622 ~~~~~~m~e~G 632 (1651)
+....+++++|
T Consensus 399 ~iGa~ll~~~~ 409 (535)
T PRK00106 399 EIGMEFARKYK 409 (535)
T ss_pred HHHHHHHHHcC
Confidence 33444444444
No 43
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=88.64 E-value=67 Score=41.46 Aligned_cols=8 Identities=25% Similarity=0.326 Sum_probs=3.3
Q ss_pred HHhhcccc
Q 000332 692 SVALTRDT 699 (1651)
Q Consensus 692 ~~~ls~D~ 699 (1651)
.++|--||
T Consensus 357 ~AGLLHDI 364 (514)
T TIGR03319 357 RAGLLHDI 364 (514)
T ss_pred HHHHHHhc
Confidence 34444444
No 44
>PRK12704 phosphodiesterase; Provisional
Probab=88.57 E-value=37 Score=43.69 Aligned_cols=10 Identities=20% Similarity=0.228 Sum_probs=4.5
Q ss_pred hhHHhhcccc
Q 000332 690 SISVALTRDT 699 (1651)
Q Consensus 690 ~i~~~ls~D~ 699 (1651)
+..++|--||
T Consensus 361 a~~AgLLHDI 370 (520)
T PRK12704 361 AKRAGLLHDI 370 (520)
T ss_pred HHHHHHHHcc
Confidence 3344444444
No 45
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=88.30 E-value=27 Score=39.53 Aligned_cols=13 Identities=54% Similarity=0.654 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 000332 366 EKRRLKEELRMEK 378 (1651)
Q Consensus 366 Ek~r~kEEeRr~K 378 (1651)
|+++.||+.|++|
T Consensus 202 ekK~~KeaKrk~k 214 (225)
T KOG4848|consen 202 EKKAVKEAKRKEK 214 (225)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 46
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=88.29 E-value=39 Score=45.02 Aligned_cols=20 Identities=30% Similarity=0.225 Sum_probs=12.0
Q ss_pred CCchHHHHHHHHhhhHHHHH
Q 000332 266 FNNDAEQRMEKKRKCDEARI 285 (1651)
Q Consensus 266 ~~dke~~rlErkrk~eeeRl 285 (1651)
.+.+...|||...|+....+
T Consensus 415 ~~~~a~~rLE~dvkkLraeL 434 (697)
T PF09726_consen 415 SEPDAISRLEADVKKLRAEL 434 (697)
T ss_pred cChHHHHHHHHHHHHHHHHH
Confidence 34556678887766644443
No 47
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=88.04 E-value=71 Score=41.46 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=15.2
Q ss_pred CCCcCCCCc--cccCCCCCCCCCCC
Q 000332 440 SLSVFPPKT--VRLKRPFSVQPWSD 462 (1651)
Q Consensus 440 ~Lp~fPp~~--V~Lk~P~ss~p~~v 462 (1651)
.+|++|+++ |++..|-|+.+...
T Consensus 513 ~~p~~p~~~~~vvi~qp~p~~~~~~ 537 (546)
T PF07888_consen 513 SLPPSPREPERVVISQPAPISSQHQ 537 (546)
T ss_pred CCCCCCCccccceeCCCCCCCCCCC
Confidence 557777654 56777877766443
No 48
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=87.78 E-value=2.1 Score=53.29 Aligned_cols=32 Identities=22% Similarity=0.164 Sum_probs=17.2
Q ss_pred CCCCCccccccccccccccCCCCCCCCCCCCC
Q 000332 225 NGGEDSLLQRESTSNNRKNAQSTSHPIFGTED 256 (1651)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 256 (1651)
+.+.|.+|+...|+-.-++.|.......+.+.
T Consensus 291 p~svdslphlr~fspsqvp~qtrs~~~l~~~g 322 (708)
T KOG3654|consen 291 PHSVDSLPHLRKFSPSQVPVQTRSSILLAEEG 322 (708)
T ss_pred CCccccccccccCCcccCccccccceeecCCC
Confidence 36678888888774433344443433333333
No 49
>PRK00106 hypothetical protein; Provisional
Probab=86.71 E-value=59 Score=42.15 Aligned_cols=8 Identities=25% Similarity=0.405 Sum_probs=3.2
Q ss_pred HHhhhhcc
Q 000332 478 ITFADVLG 485 (1651)
Q Consensus 478 ~sF~~vL~ 485 (1651)
++|....|
T Consensus 249 r~~E~~tG 256 (535)
T PRK00106 249 RTLESLTG 256 (535)
T ss_pred HHHHHHhC
Confidence 33444333
No 50
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=86.44 E-value=2.1 Score=51.30 Aligned_cols=10 Identities=0% Similarity=0.165 Sum_probs=4.8
Q ss_pred CCCCCcCCCC
Q 000332 120 LPPDAFGAPI 129 (1651)
Q Consensus 120 ~p~~af~~~i 129 (1651)
++++.++..|
T Consensus 119 ~~~~~~d~fV 128 (321)
T PF07946_consen 119 MNDENMDPFV 128 (321)
T ss_pred cCccccCceE
Confidence 4444444444
No 51
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.31 E-value=58 Score=40.99 Aligned_cols=10 Identities=40% Similarity=0.308 Sum_probs=6.4
Q ss_pred CCCchhHHHH
Q 000332 644 TPGTVKFAAF 653 (1651)
Q Consensus 644 ~~gT~K~~~f 653 (1651)
.|||-|+-+-
T Consensus 392 PPGTGKTm~A 401 (630)
T KOG0742|consen 392 PPGTGKTMFA 401 (630)
T ss_pred CCCCCchHHH
Confidence 5777776543
No 52
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=85.12 E-value=49 Score=38.39 Aligned_cols=14 Identities=14% Similarity=0.207 Sum_probs=5.9
Q ss_pred cccccCCCCccccc
Q 000332 209 RVLSQQDKPAHIFS 222 (1651)
Q Consensus 209 ~l~~q~~~~~~~~~ 222 (1651)
+|.|+.-...+++.
T Consensus 34 rl~p~hrn~~~~~~ 47 (217)
T PF10147_consen 34 RLRPRHRNILHGYL 47 (217)
T ss_pred CCCcccccccCCCC
Confidence 44444444434444
No 53
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=83.45 E-value=55 Score=38.31 Aligned_cols=13 Identities=23% Similarity=0.373 Sum_probs=5.5
Q ss_pred HHHHhhhHHHHHH
Q 000332 274 MEKKRKCDEARIA 286 (1651)
Q Consensus 274 lErkrk~eeeRl~ 286 (1651)
.|++++..++|+.
T Consensus 3 aEr~k~Ele~rL~ 15 (246)
T PF00769_consen 3 AEREKQELEERLR 15 (246)
T ss_dssp HHHHCHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 3444444444443
No 54
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues. They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.
Probab=82.07 E-value=0.43 Score=53.38 Aligned_cols=26 Identities=12% Similarity=0.270 Sum_probs=14.7
Q ss_pred HHHHhhhhccccC-CCHHHHHHHHhcc
Q 000332 476 FFITFADVLGLWP-FTLDEFVQAFHDH 501 (1651)
Q Consensus 476 FL~sF~~vL~Lsp-FTLddf~qAL~~~ 501 (1651)
+|..|-+.+.... ..|+||...+.-.
T Consensus 100 lL~~Fi~yIK~~Kvv~ledla~~f~l~ 126 (188)
T PF09756_consen 100 LLQEFINYIKEHKVVNLEDLAAEFGLR 126 (188)
T ss_dssp HHHHHHHHHHH-SEE-HHHHHHHH-S-
T ss_pred HHHHHHHHHHHcceeeHHHHHHHcCCC
Confidence 5555666666653 4788888887643
No 55
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=81.37 E-value=7.3 Score=48.82 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=11.4
Q ss_pred ccCCCccHHHHHHHHHHHhCCCCcc
Q 000332 565 QLLNPLTWHEIFRQLALSAGFGPKL 589 (1651)
Q Consensus 565 ~~LdslTWPEILRq~llsaG~g~~~ 589 (1651)
..-..+|=.|.+|.. .|+||..
T Consensus 630 alyT~~~ETeei~kl---~gmgpk~ 651 (708)
T KOG3654|consen 630 ALYTYMPETEEIRKL---TGMGPKM 651 (708)
T ss_pred cccccCccHHHHhhh---hccCchh
Confidence 345555666665543 2455543
No 56
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=81.19 E-value=1.6e+02 Score=39.02 Aligned_cols=13 Identities=38% Similarity=0.506 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 000332 310 NEERMRKEMEKHE 322 (1651)
Q Consensus 310 eEEr~rKE~Ek~e 322 (1651)
+..|+|-|+||..
T Consensus 868 eakRir~EQekd~ 880 (1187)
T KOG0579|consen 868 EAKRIRIEQEKDM 880 (1187)
T ss_pred HHHHhhhhhHHHH
Confidence 3344444444443
No 57
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=79.01 E-value=1.4e+02 Score=35.09 Aligned_cols=8 Identities=25% Similarity=0.555 Sum_probs=3.4
Q ss_pred HHHHhchh
Q 000332 515 KSIIKDIE 522 (1651)
Q Consensus 515 k~llkd~E 522 (1651)
+.|-.+++
T Consensus 192 ~~L~~EL~ 199 (246)
T PF00769_consen 192 KELKSELE 199 (246)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444443
No 58
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=78.22 E-value=1.1e+02 Score=40.17 Aligned_cols=10 Identities=30% Similarity=0.434 Sum_probs=4.8
Q ss_pred HHHHHHHHHh
Q 000332 574 EIFRQLALSA 583 (1651)
Q Consensus 574 EILRq~llsa 583 (1651)
|+-|-|+.-.
T Consensus 724 ELrrKHamq~ 733 (948)
T KOG0577|consen 724 ELRRKHAMQV 733 (948)
T ss_pred HHHHHHHHHH
Confidence 4445554443
No 59
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=77.21 E-value=1e+02 Score=39.03 Aligned_cols=8 Identities=50% Similarity=1.095 Sum_probs=4.8
Q ss_pred ccCCCccH
Q 000332 565 QLLNPLTW 572 (1651)
Q Consensus 565 ~~LdslTW 572 (1651)
..+||.+|
T Consensus 410 ~pvnP~pW 417 (420)
T COG4942 410 QPVNPQPW 417 (420)
T ss_pred CcCCchhh
Confidence 45666666
No 60
>PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein. Caldesmon (CDM) is an actin- and myosin-binding protein implicated in the regulation of actomyosin interactions in smooth muscle and non-muscle cells, possibly acting as a bridge between myosin and actin filaments []. CDM is believed to be an elongated molecule, with an N-terminal myosin/calmodulin- binding domain and a C-terminal tropomyosin/actin/calmodulin-binding domain, separated by a 40nm-long central helix []. A high-molecular-weight form of CDM is predominantly expressed in smooth muscles, while a low-molecular-weight form is widely distributed in non- muscle tissues and cells (the protein is not expressed in skeletal muscle or heart).
Probab=76.97 E-value=7.7 Score=49.27 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=17.1
Q ss_pred CCCCCCchhhhhHHHHHHHHHHhhhh
Q 000332 458 QPWSDSEENVGNLLMVWRFFITFADV 483 (1651)
Q Consensus 458 ~p~~vp~e~vgdLLmVweFL~sF~~v 483 (1651)
.+|.++...|.+.-++|+-=.+|+..
T Consensus 411 ~dlp~~~~~v~~~ks~we~g~v~~~~ 436 (492)
T PF02029_consen 411 SDLPVPAEGVRSIKSMWEKGNVFSSS 436 (492)
T ss_pred ccCCcchHHHhhhhhhcccCCcccCC
Confidence 44555667777777888876666543
No 61
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=76.83 E-value=2.4e+02 Score=36.62 Aligned_cols=10 Identities=40% Similarity=0.727 Sum_probs=4.0
Q ss_pred CCCCccccch
Q 000332 604 EGKGCEDIVS 613 (1651)
Q Consensus 604 eg~~~~d~~~ 613 (1651)
.|.|-+.||+
T Consensus 519 ~~~d~~~ila 528 (582)
T PF09731_consen 519 EGDDVESILA 528 (582)
T ss_pred CCCCHHHHHH
Confidence 3444444443
No 62
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=75.78 E-value=2.2e+02 Score=39.08 Aligned_cols=16 Identities=31% Similarity=0.216 Sum_probs=7.5
Q ss_pred HhCCCccccCCccccc
Q 000332 101 QLGEPLREDGPILGME 116 (1651)
Q Consensus 101 q~g~~~~~d~p~~g~~ 116 (1651)
||-...-||.-+-+++
T Consensus 853 ql~~~~~e~e~~~~~~ 868 (1189)
T KOG1265|consen 853 QLAALGGEDEDIADVP 868 (1189)
T ss_pred HHHhcccchhhhccCc
Confidence 4444444444444443
No 63
>PLN03086 PRLI-interacting factor K; Provisional
Probab=73.87 E-value=15 Score=47.46 Aligned_cols=22 Identities=23% Similarity=0.301 Sum_probs=9.7
Q ss_pred HhhccccchheeccCcceeecc
Q 000332 693 VALTRDTKLFERIAPSTYCVRP 714 (1651)
Q Consensus 693 ~~ls~D~~Lferiapsty~lr~ 714 (1651)
+||+..-++-.---.-+|.+.+
T Consensus 214 stLT~Gd~i~i~~~~~~y~~~V 235 (567)
T PLN03086 214 ATLSEDDVLVVNYGQLTYKLKV 235 (567)
T ss_pred ccccCCCEEEEecCCEEEEEEE
Confidence 3344433333333344666643
No 64
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=73.80 E-value=18 Score=43.67 Aligned_cols=11 Identities=0% Similarity=-0.034 Sum_probs=6.2
Q ss_pred hHHHHHHHHHH
Q 000332 469 NLLMVWRFFIT 479 (1651)
Q Consensus 469 dLLmVweFL~s 479 (1651)
.+--+|..|+.
T Consensus 238 KiKELhqrI~k 248 (361)
T KOG3634|consen 238 KIKELHQRICK 248 (361)
T ss_pred HHHHHHHHHHH
Confidence 34456666654
No 65
>PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein. Caldesmon (CDM) is an actin- and myosin-binding protein implicated in the regulation of actomyosin interactions in smooth muscle and non-muscle cells, possibly acting as a bridge between myosin and actin filaments []. CDM is believed to be an elongated molecule, with an N-terminal myosin/calmodulin- binding domain and a C-terminal tropomyosin/actin/calmodulin-binding domain, separated by a 40nm-long central helix []. A high-molecular-weight form of CDM is predominantly expressed in smooth muscles, while a low-molecular-weight form is widely distributed in non- muscle tissues and cells (the protein is not expressed in skeletal muscle or heart).
Probab=73.54 E-value=21 Score=45.56 Aligned_cols=9 Identities=33% Similarity=0.357 Sum_probs=5.4
Q ss_pred HHHHHHHHH
Q 000332 93 RAIACVEAQ 101 (1651)
Q Consensus 93 ~~i~~~~~q 101 (1651)
+.=.|+|+|
T Consensus 80 RlqEAlERQ 88 (492)
T PF02029_consen 80 RLQEALERQ 88 (492)
T ss_pred HHHHHHHHh
Confidence 445566766
No 66
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=72.76 E-value=3.9 Score=47.74 Aligned_cols=23 Identities=30% Similarity=0.629 Sum_probs=9.9
Q ss_pred cccccchhhhcccccccCCCCccc
Q 000332 1220 QLLVICDVCLDSYLCEDAHCPSCH 1243 (1651)
Q Consensus 1220 ~~l~~C~~c~~~y~~~e~hc~~CH 1243 (1651)
|..--|+-|... +.+-..|-.|+
T Consensus 36 N~~MeCdkC~r~-QKnRAFCYFC~ 58 (314)
T PF06524_consen 36 NALMECDKCQRK-QKNRAFCYFCQ 58 (314)
T ss_pred Cccccchhhhhh-ccccceeehhh
Confidence 444445555332 33344444444
No 67
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=70.95 E-value=2.7e+02 Score=37.51 Aligned_cols=14 Identities=7% Similarity=0.143 Sum_probs=6.8
Q ss_pred HHHHHHHHhccCcc
Q 000332 491 LDEFVQAFHDHESR 504 (1651)
Q Consensus 491 Lddf~qAL~~~dS~ 504 (1651)
++.+...|..+|-+
T Consensus 631 ~ei~~~~~~~~d~e 644 (697)
T PF09726_consen 631 LEIAQGQLRKKDKE 644 (697)
T ss_pred HHHHHHHHHHHHHH
Confidence 44445555545544
No 68
>PLN03086 PRLI-interacting factor K; Provisional
Probab=70.54 E-value=20 Score=46.46 Aligned_cols=10 Identities=40% Similarity=0.650 Sum_probs=5.3
Q ss_pred cccchhhhhh
Q 000332 1254 KFSEHSIQCE 1263 (1651)
Q Consensus 1254 ~fs~h~a~ce 1263 (1651)
....|..+|-
T Consensus 529 ~Lt~HE~~CG 538 (567)
T PLN03086 529 GMSEHESICG 538 (567)
T ss_pred hHHHHHHhcC
Confidence 4555655553
No 69
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=70.29 E-value=3.4e+02 Score=35.35 Aligned_cols=7 Identities=43% Similarity=0.657 Sum_probs=3.2
Q ss_pred hHHHHHH
Q 000332 505 LLGEIHL 511 (1651)
Q Consensus 505 LL~EIHv 511 (1651)
+|+-+-.
T Consensus 495 ~~~~~~s 501 (582)
T PF09731_consen 495 LLGHLLS 501 (582)
T ss_pred HHHHHHH
Confidence 5544443
No 70
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=68.97 E-value=1.3e+02 Score=40.69 Aligned_cols=14 Identities=21% Similarity=0.190 Sum_probs=6.9
Q ss_pred hhhhccccCCCHHH
Q 000332 480 FADVLGLWPFTLDE 493 (1651)
Q Consensus 480 F~~vL~LspFTLdd 493 (1651)
+...|+|-+++.++
T Consensus 703 ~~~~lDL~G~~~ee 716 (782)
T PRK00409 703 VSLELDLRGMRYEE 716 (782)
T ss_pred CCceEECCCCCHHH
Confidence 34445555555544
No 71
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=68.63 E-value=3.3e+02 Score=34.67 Aligned_cols=8 Identities=13% Similarity=0.164 Sum_probs=4.2
Q ss_pred HHHhhhhc
Q 000332 477 FITFADVL 484 (1651)
Q Consensus 477 L~sF~~vL 484 (1651)
|+.||...
T Consensus 308 l~rFG~~~ 315 (420)
T COG4942 308 LRRFGQAD 315 (420)
T ss_pred HHHhcccC
Confidence 45555554
No 72
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=67.09 E-value=2.4e+02 Score=32.98 Aligned_cols=7 Identities=14% Similarity=0.221 Sum_probs=2.8
Q ss_pred hHHHHHH
Q 000332 269 DAEQRME 275 (1651)
Q Consensus 269 ke~~rlE 275 (1651)
+++..++
T Consensus 85 eelee~e 91 (217)
T PF10147_consen 85 EELEEQE 91 (217)
T ss_pred HHHHHHH
Confidence 3444433
No 73
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=63.35 E-value=5.9e+02 Score=36.47 Aligned_cols=35 Identities=17% Similarity=0.157 Sum_probs=18.3
Q ss_pred hhhh-hhHHHH--HhhcccCCHH--HHHH--HHHHHHhhhcc
Q 000332 1307 WTDE-RRKTWG--MKLNMSSSAE--EVLQ--LLTILESGIKR 1341 (1651)
Q Consensus 1307 W~~~-~RK~W~--~~l~~ass~~--Ellq--vL~~le~aIk~ 1341 (1651)
+.++ ..+.|+ ..|...||-- -|+. +++.|-.+|+.
T Consensus 1102 v~Eng~~~~~rn~~~L~~vsS~G~syLi~~~~~i~l~~~lr~ 1143 (1201)
T PF12128_consen 1102 VKENGNDKVIRNDRQLNNVSSHGTSYLILCMFFIALTRMLRG 1143 (1201)
T ss_pred EEECCcccccccHHHHHhcCCchHHHHHHHHHHHHHHHHhcC
Confidence 3344 367787 6777666632 2222 23445555555
No 74
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.08 E-value=3.8e+02 Score=35.26 Aligned_cols=23 Identities=26% Similarity=0.383 Sum_probs=9.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHH
Q 000332 274 MEKKRKCDEARIAREVEANEIRI 296 (1651)
Q Consensus 274 lErkrk~eeeRl~rE~E~~e~r~ 296 (1651)
-+.++++++.++.-++..+.++.
T Consensus 283 ae~~~~a~~a~~~Aeq~~~~~~~ 305 (548)
T COG2268 283 AETRREAEQAEILAEQAIQEEKA 305 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333333
No 75
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=62.87 E-value=5.2e+02 Score=36.76 Aligned_cols=18 Identities=6% Similarity=0.206 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhCCCc
Q 000332 89 IMELRAIACVEAQLGEPL 106 (1651)
Q Consensus 89 ~~~~~~i~~~~~q~g~~~ 106 (1651)
.|..-.+.-|+..-|+++
T Consensus 85 ~I~~i~~~NFKSYaG~~i 102 (1293)
T KOG0996|consen 85 MITEIVVENFKSYAGKQI 102 (1293)
T ss_pred eehhhhhhhhhhhcCcee
Confidence 455567788899999875
No 76
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=62.64 E-value=1.9e+02 Score=39.37 Aligned_cols=17 Identities=18% Similarity=0.012 Sum_probs=8.9
Q ss_pred HhhhhccccCCCHHHHH
Q 000332 479 TFADVLGLWPFTLDEFV 495 (1651)
Q Consensus 479 sF~~vL~LspFTLddf~ 495 (1651)
.+...|+|-++++++-.
T Consensus 691 ~~~~~ldl~G~~~~eA~ 707 (771)
T TIGR01069 691 EASLTLDLRGQRSEEAL 707 (771)
T ss_pred CCCceEECCCCCHHHHH
Confidence 34445556666655443
No 77
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=62.01 E-value=5.1e+02 Score=35.90 Aligned_cols=8 Identities=0% Similarity=0.007 Sum_probs=3.0
Q ss_pred chHHHHHH
Q 000332 268 NDAEQRME 275 (1651)
Q Consensus 268 dke~~rlE 275 (1651)
..-+..|.
T Consensus 1028 ~~r~~el~ 1035 (1189)
T KOG1265|consen 1028 AGRVRELV 1035 (1189)
T ss_pred hhhHHHHH
Confidence 33333333
No 78
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=61.28 E-value=1.9e+02 Score=39.28 Aligned_cols=11 Identities=18% Similarity=-0.034 Sum_probs=5.1
Q ss_pred cCCCccHHHHH
Q 000332 566 LLNPLTWHEIF 576 (1651)
Q Consensus 566 ~LdslTWPEIL 576 (1651)
+|-.+|--|-+
T Consensus 697 dl~G~~~~eA~ 707 (771)
T TIGR01069 697 DLRGQRSEEAL 707 (771)
T ss_pred ECCCCCHHHHH
Confidence 34445554444
No 79
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=60.53 E-value=37 Score=47.53 Aligned_cols=19 Identities=11% Similarity=0.017 Sum_probs=11.0
Q ss_pred cccccCCCCCCCCCCCCCC
Q 000332 239 NNRKNAQSTSHPIFGTEDP 257 (1651)
Q Consensus 239 ~~~~~~~~~~~~i~~~~~P 257 (1651)
+.++..+|+.+..+.+..|
T Consensus 2065 ~~~~m~py~~p~~~a~~~~ 2083 (2220)
T KOG3598|consen 2065 NRPLMNPYGGPHFAAPSGP 2083 (2220)
T ss_pred chhhcccccCCcccCCCCc
Confidence 4455556666666665555
No 80
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=60.14 E-value=5.9 Score=49.31 Aligned_cols=17 Identities=18% Similarity=0.114 Sum_probs=10.4
Q ss_pred CCcCCcccCcCCCCCCc
Q 000332 1622 YSEGNIDMSEASDQNGI 1638 (1651)
Q Consensus 1622 ~~~~dv~m~~~~d~n~~ 1638 (1651)
++++..+.++.+|||--
T Consensus 87 ~d~~~~~~~~~ddG~~T 103 (458)
T PF10446_consen 87 DDSTVHDFDSDDDGNET 103 (458)
T ss_pred cccccccccccccCccC
Confidence 33344556667899665
No 81
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=59.72 E-value=2.7e+02 Score=37.96 Aligned_cols=9 Identities=44% Similarity=0.678 Sum_probs=4.6
Q ss_pred hcCCCCccH
Q 000332 658 LEGSKGLTV 666 (1651)
Q Consensus 658 ~~G~~gl~v 666 (1651)
..|..|.||
T Consensus 770 ~~GG~Gat~ 778 (782)
T PRK00409 770 NEGGFGVTI 778 (782)
T ss_pred ccCCCeEEE
Confidence 345555554
No 82
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.23 E-value=36 Score=42.50 Aligned_cols=9 Identities=33% Similarity=0.405 Sum_probs=5.6
Q ss_pred ccccccccc
Q 000332 143 ESKIYDRYD 151 (1651)
Q Consensus 143 ~~~iy~~~~ 151 (1651)
.-++..|||
T Consensus 188 ~L~l~~RqD 196 (440)
T KOG2357|consen 188 TLKLVKRQD 196 (440)
T ss_pred hhhhhhhcc
Confidence 455666666
No 83
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=54.69 E-value=4.1 Score=52.32 Aligned_cols=10 Identities=20% Similarity=0.421 Sum_probs=2.4
Q ss_pred ccCCCCchhh
Q 000332 1368 PILPWIPKTT 1377 (1651)
Q Consensus 1368 ~~lpw~P~Tt 1377 (1651)
..|.|.+.+-
T Consensus 457 itlSWk~~~~ 466 (556)
T PF05918_consen 457 ITLSWKEAKK 466 (556)
T ss_dssp ---TTS----
T ss_pred cceeeeeccc
Confidence 4577877776
No 84
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=54.21 E-value=7 Score=51.78 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=13.9
Q ss_pred hCCCccccCCccccccccCCCCCcC
Q 000332 102 LGEPLREDGPILGMEFDSLPPDAFG 126 (1651)
Q Consensus 102 ~g~~~~~d~p~~g~~fd~~p~~af~ 126 (1651)
-||+++.-.|. .|+.+.|+.-|
T Consensus 45 ~~e~~~k~~~~---~f~~~~~~~~~ 66 (1516)
T KOG1832|consen 45 PGEDSAKKEAS---DFEMLKTYSTG 66 (1516)
T ss_pred CchhhccCCCC---hhhhcCCCchh
Confidence 47777765553 47777776655
No 85
>PF05914 RIB43A: RIB43A; InterPro: IPR008805 This family consists of several RIB43A-like eukaryotic proteins. Ciliary and flagellar microtubules contain a specialised set of protofilaments, termed ribbons, that are composed of tubulin and several associated proteins. RIB43A was first characterised in the unicellular biflagellate, Chlamydomonas reinhardtii although highly related sequences are present in several higher eukaryotes including humans. The function of this protein is unknown although the structure of RIB43A and its association with the specialised protofilament ribbons and with basal bodies is relevant to the proposed role of ribbons in forming and stabilising doublet and triplet microtubules and in organising their three-dimensional structure. Human RIB43A homologues could represent a structural requirement in centriole replication in dividing cells [].
Probab=53.53 E-value=5.6e+02 Score=32.28 Aligned_cols=20 Identities=30% Similarity=0.358 Sum_probs=11.6
Q ss_pred CCCCCCCchHHHHHHHHhhh
Q 000332 261 SDGQTFNNDAEQRMEKKRKC 280 (1651)
Q Consensus 261 s~~~~~~dke~~rlErkrk~ 280 (1651)
|..+....+++...+|++..
T Consensus 137 Ss~Q~F~GEDl~~~~R~k~Q 156 (379)
T PF05914_consen 137 SSLQKFDGEDLNREERKKLQ 156 (379)
T ss_pred hhccccccccCCHHHHHHHH
Confidence 44555666666666665544
No 86
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=52.22 E-value=9.4e+02 Score=34.54 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=11.9
Q ss_pred hhccccchheeccCcceeecc
Q 000332 694 ALTRDTKLFERIAPSTYCVRP 714 (1651)
Q Consensus 694 ~ls~D~~Lferiapsty~lr~ 714 (1651)
.++.+. -|+.|+-...++++
T Consensus 1018 ~v~~~~-~~~~i~~i~v~i~s 1037 (1201)
T PF12128_consen 1018 EVSEDL-FFEAISDIEVRIRS 1037 (1201)
T ss_pred HHhhhc-cccccceeEEEEEe
Confidence 444444 67888877655553
No 87
>PF13868 Trichoplein: Tumour suppressor, Mitostatin
Probab=51.96 E-value=5.1e+02 Score=31.33 Aligned_cols=16 Identities=31% Similarity=0.464 Sum_probs=6.8
Q ss_pred HHHHHhhhhhhhHHHH
Q 000332 393 RKMAKESMDLIEDEQL 408 (1651)
Q Consensus 393 rreAkE~aeliedErL 408 (1651)
..........|+.++.
T Consensus 319 ~~~e~~~~~~i~~~r~ 334 (350)
T PF13868_consen 319 KEEEKEEQERIEEERQ 334 (350)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444544443
No 88
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=51.86 E-value=7.9e+02 Score=37.12 Aligned_cols=137 Identities=21% Similarity=0.324 Sum_probs=0.0
Q ss_pred chHHHHHHHHhhhHHHHHH------HHHHHHHHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000332 268 NDAEQRMEKKRKCDEARIA------REVEANEIRIQKELERQDN------LRRKNEERMRKEMEKHERERRKEEERLMRE 335 (1651)
Q Consensus 268 dke~~rlErkrk~eeeRl~------rE~E~~e~r~~kE~Ekqe~------~RrkeEEr~rKE~Ek~eRE~rkeEEr~erE 335 (1651)
++...+|.+++|..++++. ...+++.....+-..+.+. ..-+++.+.+.+.|+..|...-+. +..++
T Consensus 977 ~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el-~~~~e 1055 (1930)
T KOG0161|consen 977 DENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGEL-KDLQE 1055 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 000332 336 RQREEERSLREQKREMERRE--------KFLQKEYLRAEKRRLKEELRMEKQAAKRKVAIEKATARKMAKESMDLIED 405 (1651)
Q Consensus 336 k~kEEER~~rEqrrEeER~e--------Ke~ekE~~r~Ek~r~kEEeRr~KEeerekaeeEka~~rreAkE~aelied 405 (1651)
...+......+-..+..+++ +-.+.........++..+...+..+..+..+.|+....+..+.+.++..+
T Consensus 1056 ~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~e 1133 (1930)
T KOG0161|consen 1056 SIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEE 1133 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 89
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=51.67 E-value=7.6e+02 Score=33.27 Aligned_cols=10 Identities=20% Similarity=0.448 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 000332 897 LEDRLEAANA 906 (1651)
Q Consensus 897 IderlEqa~a 906 (1651)
|++-+.+.+.
T Consensus 874 ieeE~~~~~~ 883 (948)
T KOG0577|consen 874 IEEELAQLQT 883 (948)
T ss_pred HHHHHHHhcc
Confidence 3333333333
No 90
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=51.43 E-value=6.1e+02 Score=32.10 Aligned_cols=13 Identities=23% Similarity=0.174 Sum_probs=6.5
Q ss_pred chHHHHHHHHhhh
Q 000332 268 NDAEQRMEKKRKC 280 (1651)
Q Consensus 268 dke~~rlErkrk~ 280 (1651)
+..+..|.++.|.
T Consensus 155 ~al~~~L~~k~Kt 167 (442)
T PF06637_consen 155 NALLLMLNQKAKT 167 (442)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555554
No 91
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=51.40 E-value=3.8e+02 Score=29.76 Aligned_cols=13 Identities=15% Similarity=0.419 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 000332 290 EANEIRIQKELER 302 (1651)
Q Consensus 290 E~~e~r~~kE~Ek 302 (1651)
++++.+++.+.+.
T Consensus 34 eeR~~~I~~~Ld~ 46 (154)
T PRK06568 34 DAKILEVQEKVLK 46 (154)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 92
>PRK12705 hypothetical protein; Provisional
Probab=51.25 E-value=7e+02 Score=32.72 Aligned_cols=11 Identities=18% Similarity=0.021 Sum_probs=5.5
Q ss_pred hHHHHHHHHhc
Q 000332 622 ENAFAWMREKG 632 (1651)
Q Consensus 622 ~~~~~~m~e~G 632 (1651)
.....+++++|
T Consensus 372 ~iGaeLlkk~~ 382 (508)
T PRK12705 372 EIGAELARKFN 382 (508)
T ss_pred HHHHHHHHhcC
Confidence 33445555555
No 93
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=51.10 E-value=2.2e+02 Score=36.22 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=13.1
Q ss_pred cccCCCCcCCCCccccCCCCCCC
Q 000332 436 SFRDSLSVFPPKTVRLKRPFSVQ 458 (1651)
Q Consensus 436 ~~Rd~Lp~fPp~~V~Lk~P~ss~ 458 (1651)
.+=+.|..+|+....++.|.++.
T Consensus 149 ~~i~~l~~~~~~~~~~~~~~~~~ 171 (445)
T PRK13428 149 RFLDELDAMAPSTADVDYPLLAK 171 (445)
T ss_pred HHHHHhhccCCCchhhcCchhhh
Confidence 33345556666666666666544
No 94
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=49.27 E-value=3.6e+02 Score=33.92 Aligned_cols=9 Identities=33% Similarity=0.571 Sum_probs=4.8
Q ss_pred CCCCCCCCC
Q 000332 39 AGAEPGSDY 47 (1651)
Q Consensus 39 ~~~~~~~~~ 47 (1651)
.+|+.|+.|
T Consensus 3 lam~~~~~y 11 (442)
T PF06637_consen 3 LAMERGGPY 11 (442)
T ss_pred ccccCCCcc
Confidence 345555555
No 95
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=48.93 E-value=12 Score=49.81 Aligned_cols=14 Identities=21% Similarity=0.375 Sum_probs=7.7
Q ss_pred cccccccccccCcc
Q 000332 1514 TSKNETFQGQMGHM 1527 (1651)
Q Consensus 1514 ~~p~~~llg~~~~~ 1527 (1651)
..|.+..||.+.|-
T Consensus 1367 t~~~D~~l~vIe~~ 1380 (1516)
T KOG1832|consen 1367 TEPTDSFLGVIEME 1380 (1516)
T ss_pred cCCccceEEEEecc
Confidence 44566666655543
No 96
>PRK12705 hypothetical protein; Provisional
Probab=48.32 E-value=7.7e+02 Score=32.35 Aligned_cols=12 Identities=17% Similarity=0.158 Sum_probs=6.0
Q ss_pred chhhHHhhcccc
Q 000332 688 EASISVALTRDT 699 (1651)
Q Consensus 688 e~~i~~~ls~D~ 699 (1651)
+.+..++|-.||
T Consensus 347 d~a~~AGLLHDI 358 (508)
T PRK12705 347 ALAKRAGLLHDI 358 (508)
T ss_pred HHHHHHHHHHHc
Confidence 444445555555
No 97
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=48.01 E-value=4.3e+02 Score=29.38 Aligned_cols=10 Identities=20% Similarity=0.195 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 000332 381 AKRKVAIEKA 390 (1651)
Q Consensus 381 erekaeeEka 390 (1651)
+++..+.|++
T Consensus 105 A~~~Ie~Ek~ 114 (154)
T PRK06568 105 AIQLIQNQKS 114 (154)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 98
>PRK04863 mukB cell division protein MukB; Provisional
Probab=47.00 E-value=1.1e+03 Score=34.75 Aligned_cols=15 Identities=20% Similarity=0.346 Sum_probs=8.0
Q ss_pred ccHHHHHHHHHHHhC
Q 000332 570 LTWHEIFRQLALSAG 584 (1651)
Q Consensus 570 lTWPEILRq~llsaG 584 (1651)
++-++-|++.-.-+|
T Consensus 606 ~~a~~al~~L~eq~g 620 (1486)
T PRK04863 606 LAAQDALARLREQSG 620 (1486)
T ss_pred HhhHHHHHHHHHhcc
Confidence 455666666444444
No 99
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=46.61 E-value=2e+02 Score=36.52 Aligned_cols=10 Identities=30% Similarity=0.454 Sum_probs=6.3
Q ss_pred ccCCCccHHH
Q 000332 565 QLLNPLTWHE 574 (1651)
Q Consensus 565 ~~LdslTWPE 574 (1651)
..|++.+|+=
T Consensus 408 ~ll~pv~~gl 417 (506)
T KOG2507|consen 408 NLLDPVSGGL 417 (506)
T ss_pred cccCccchhH
Confidence 5667777663
No 100
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.32 E-value=13 Score=45.78 Aligned_cols=43 Identities=23% Similarity=0.245 Sum_probs=20.3
Q ss_pred CCcccCCcccccccCCcchhhhccc-cCCcCCcccC-cCCCCCCc
Q 000332 1596 RDVMEVSDEDEDAFGDDAGIEEAVD-EYSEGNIDMS-EASDQNGI 1638 (1651)
Q Consensus 1596 ~~~~e~sd~d~~~~~d~~~~e~~~~-~~~~~dv~m~-~~~d~n~~ 1638 (1651)
+.+=+.|.|.+||++||++++++++ +||.+|-|-. .|++-|-+
T Consensus 263 ~sv~~~ss~~edD~Dddd~dDdeeN~ddd~~d~d~e~~~v~dN~~ 307 (514)
T KOG3130|consen 263 CSVNGSSSYHEDDDDDDDDDDDEENIDDDDGDNDHEALGVGDNSI 307 (514)
T ss_pred ccccCCCCccccccccccccchhhcccccccccchhhhccCCCcC
Confidence 3344444444444444443332223 5555555433 37777766
No 101
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=42.28 E-value=7.7 Score=32.43 Aligned_cols=26 Identities=23% Similarity=0.589 Sum_probs=20.0
Q ss_pred cccchhhhccccccc---------CCCCccccccC
Q 000332 1222 LVICDVCLDSYLCED---------AHCPSCHRTFG 1247 (1651)
Q Consensus 1222 l~~C~~c~~~y~~~e---------~hc~~CH~tf~ 1247 (1651)
...|+.|...|.-.+ -.|+.||.+|.
T Consensus 2 ~~~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~~~~ 36 (38)
T TIGR02098 2 RIQCPNCKTSFRVVDSQLGANGGKVRCGKCGHVWY 36 (38)
T ss_pred EEECCCCCCEEEeCHHHcCCCCCEEECCCCCCEEE
Confidence 357999998776653 48999998875
No 102
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=41.50 E-value=6.1e+02 Score=29.24 Aligned_cols=11 Identities=36% Similarity=0.540 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 000332 290 EANEIRIQKEL 300 (1651)
Q Consensus 290 E~~e~r~~kE~ 300 (1651)
++++.++...+
T Consensus 83 e~R~~~I~~~L 93 (204)
T PRK09174 83 ETRRDRIAQDL 93 (204)
T ss_pred HHHHHHHHHHH
Confidence 33333344333
No 103
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=41.33 E-value=3.2e+02 Score=35.86 Aligned_cols=10 Identities=30% Similarity=0.325 Sum_probs=4.6
Q ss_pred hHHhhccccc
Q 000332 691 ISVALTRDTK 700 (1651)
Q Consensus 691 i~~~ls~D~~ 700 (1651)
|.+-.|+|..
T Consensus 592 i~V~rasdP~ 601 (645)
T KOG0681|consen 592 INVVRASDPV 601 (645)
T ss_pred eEEEecCCcc
Confidence 4444444443
No 104
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=41.13 E-value=18 Score=45.23 Aligned_cols=28 Identities=32% Similarity=0.649 Sum_probs=23.7
Q ss_pred ccccccchhhhcccccccCCCCcccccc
Q 000332 1219 RQLLVICDVCLDSYLCEDAHCPSCHRTF 1246 (1651)
Q Consensus 1219 ~~~l~~C~~c~~~y~~~e~hc~~CH~tf 1246 (1651)
.+-+..|+.|+-++-.+..||++||.+.
T Consensus 218 ~~~l~~C~~Cd~l~~~~~a~CpRC~~~L 245 (419)
T PRK15103 218 RQGLRSCSCCTAILPADQPVCPRCHTKG 245 (419)
T ss_pred ccCCCcCCCCCCCCCCCCCCCCCCCCcC
Confidence 3457789999999888888999999776
No 105
>PRK11637 AmiB activator; Provisional
Probab=41.02 E-value=8.4e+02 Score=30.72 Aligned_cols=114 Identities=9% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000332 283 ARIAREVEANEIRIQKELERQDNLRRKNEERMR-KEMEKHERERRKEEERLMRERQREEERSLREQKREMERREKFLQKE 361 (1651)
Q Consensus 283 eRl~rE~E~~e~r~~kE~Ekqe~~RrkeEEr~r-KE~Ek~eRE~rkeEEr~erEk~kEEER~~rEqrrEeER~eKe~ekE 361 (1651)
..+.+.....-......+++....+.+-++++. .+....+.+.++.+-..++..+...-...+.++++.+..-.+.+++
T Consensus 162 ~~i~~~d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~ 241 (428)
T PRK11637 162 GYLNQARQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRAN 241 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000332 362 YLRAEKRRLKEELRMEKQAAKRKVAIEKATARKMA 396 (1651)
Q Consensus 362 ~~r~Ek~r~kEEeRr~KEeerekaeeEka~~rreA 396 (1651)
..+.++...+.+...+++.+....+.+++.....+
T Consensus 242 ~~~L~~~I~~l~~~~~~~~~~~~~~~~~~~~~~~~ 276 (428)
T PRK11637 242 ESRLRDSIARAEREAKARAEREAREAARVRDKQKQ 276 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
No 106
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=41.01 E-value=4.5e+02 Score=35.16 Aligned_cols=32 Identities=9% Similarity=-0.126 Sum_probs=21.1
Q ss_pred CCCccccccccchhhHHHHHHHHHHHHHhCCC
Q 000332 74 DDMPIVRRSYESQQSIMELRAIACVEAQLGEP 105 (1651)
Q Consensus 74 ~~~~~~~~~y~~~~~~~~~~~i~~~~~q~g~~ 105 (1651)
+.++.-+-||.+.........+..|.+--|--
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v 67 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFV 67 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcc
Confidence 44555566888877777777777777766543
No 107
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=38.93 E-value=32 Score=45.80 Aligned_cols=45 Identities=16% Similarity=0.180 Sum_probs=26.5
Q ss_pred cccccccchhhHHHHHHHHHHHHHhCCCccccCCccccccccCCCCCcCCCCcc
Q 000332 78 IVRRSYESQQSIMELRAIACVEAQLGEPLREDGPILGMEFDSLPPDAFGAPIGS 131 (1651)
Q Consensus 78 ~~~~~y~~~~~~~~~~~i~~~~~q~g~~~~~d~p~~g~~fd~~p~~af~~~i~~ 131 (1651)
-++-||-|++.. -+|-.|+--| --+.+|+--|.||-+....|+.+
T Consensus 80 l~~qg~~p~~~~------~~~~~~~~~P---qq~l~~Q~~~~l~s~~ls~~qP~ 124 (1194)
T KOG4246|consen 80 LNRQGYVPTLPD------KFASGSYLSP---QQHLYGQKTDDLYSDKLSGYQPV 124 (1194)
T ss_pred hhcccccCcccc------hhhhccccCc---hhhccCCcccccccccccCCCch
Confidence 356666665322 3333333222 34677888888888877777753
No 108
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=38.77 E-value=62 Score=40.64 Aligned_cols=12 Identities=25% Similarity=0.747 Sum_probs=7.4
Q ss_pred hhhccCCCccHH
Q 000332 562 NWQQLLNPLTWH 573 (1651)
Q Consensus 562 ~w~~~LdslTWP 573 (1651)
.|..+++++.||
T Consensus 423 ~~s~f~~~f~wp 434 (506)
T KOG2507|consen 423 RVSSFANPFSWP 434 (506)
T ss_pred HHHHHhccCCCC
Confidence 345566667776
No 109
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=38.74 E-value=10 Score=32.09 Aligned_cols=25 Identities=28% Similarity=0.905 Sum_probs=17.0
Q ss_pred cccchhhhcccccccC---------CCCcccccc
Q 000332 1222 LVICDVCLDSYLCEDA---------HCPSCHRTF 1246 (1651)
Q Consensus 1222 l~~C~~c~~~y~~~e~---------hc~~CH~tf 1246 (1651)
..+|+.|+-.|--.+. .|+.|+.+|
T Consensus 2 ~i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f 35 (37)
T PF13719_consen 2 IITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVF 35 (37)
T ss_pred EEECCCCCceEEcCHHHcccCCcEEECCCCCcEe
Confidence 4567777777766654 577777666
No 110
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=38.35 E-value=9.1 Score=29.95 Aligned_cols=23 Identities=30% Similarity=0.875 Sum_probs=18.7
Q ss_pred CCCCccccccCCCCCCccccchhhhhh
Q 000332 1237 AHCPSCHRTFGAVDKSSKFSEHSIQCE 1263 (1651)
Q Consensus 1237 ~hc~~CH~tf~~~dl~~~fs~h~a~ce 1263 (1651)
..|+.|.++|.. ..+..|...|.
T Consensus 3 ~~C~~CgR~F~~----~~l~~H~~~C~ 25 (25)
T PF13913_consen 3 VPCPICGRKFNP----DRLEKHEKICK 25 (25)
T ss_pred CcCCCCCCEECH----HHHHHHHHhcC
Confidence 469999999964 58889988884
No 111
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=36.18 E-value=16 Score=42.16 Aligned_cols=32 Identities=28% Similarity=0.641 Sum_probs=26.7
Q ss_pred hhhccccccchhhhcccccccCCCCccccccC
Q 000332 1216 TRCRQLLVICDVCLDSYLCEDAHCPSCHRTFG 1247 (1651)
Q Consensus 1216 Kr~~~~l~~C~~c~~~y~~~e~hc~~CH~tf~ 1247 (1651)
+|-+.+--+|.+|+-.+-+--.||+.||.-|.
T Consensus 254 ~rvv~~GfvCsVCLsvfc~p~~~C~~C~skF~ 285 (296)
T COG5242 254 NRVVLLGFVCSVCLSVFCRPVPVCKKCKSKFS 285 (296)
T ss_pred ccEEEEeeehhhhheeecCCcCcCcccccccc
Confidence 35556667899999999999999999996664
No 112
>PLN02316 synthase/transferase
Probab=35.61 E-value=1.1e+02 Score=42.80 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=16.4
Q ss_pred hhcCCCCccHHHHHHHhhhhccc
Q 000332 657 SLEGSKGLTVLELADKIQKSGLR 679 (1651)
Q Consensus 657 s~~G~~gl~v~ela~~~q~~~l~ 679 (1651)
+..|-=|-=|.+|++.+++.|..
T Consensus 601 aKvGGLgDVV~sLp~ALa~~Gh~ 623 (1036)
T PLN02316 601 AKVGGLGDVVTSLSRAVQDLNHN 623 (1036)
T ss_pred CCcCcHHHHHHHHHHHHHHcCCE
Confidence 44565566678899999888853
No 113
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=35.34 E-value=1.2e+02 Score=39.06 Aligned_cols=10 Identities=10% Similarity=0.391 Sum_probs=4.7
Q ss_pred hHHHHHHHHh
Q 000332 269 DAEQRMEKKR 278 (1651)
Q Consensus 269 ke~~rlErkr 278 (1651)
++..|++++-
T Consensus 363 eev~K~~~~v 372 (591)
T KOG2505|consen 363 EEVKKLARKV 372 (591)
T ss_pred HHHHHHHHHH
Confidence 4455555443
No 114
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=35.11 E-value=1.6e+03 Score=32.16 Aligned_cols=15 Identities=7% Similarity=-0.093 Sum_probs=7.8
Q ss_pred CCccccccccccccc
Q 000332 196 SRVHGVQGHVARVRV 210 (1651)
Q Consensus 196 ~~~~~~~~~~~~~~l 210 (1651)
++.+++.-.+++.+.
T Consensus 617 ~p~n~~~aytldg~~ 631 (1074)
T KOG0250|consen 617 PPANVTKAYTLDGRQ 631 (1074)
T ss_pred CCccceeeeccCccc
Confidence 445566555555443
No 115
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=33.45 E-value=2.1e+02 Score=39.10 Aligned_cols=25 Identities=24% Similarity=0.085 Sum_probs=18.8
Q ss_pred cchhhHHHHHHHHHHHHHhCCCccc
Q 000332 84 ESQQSIMELRAIACVEAQLGEPLRE 108 (1651)
Q Consensus 84 ~~~~~~~~~~~i~~~~~q~g~~~~~ 108 (1651)
-+++-.+-+.++.+++..-|.||--
T Consensus 494 ayi~yes~~~aq~a~~~~rgap~G~ 518 (975)
T KOG0112|consen 494 AYIQYESPPAAQAATHDMRGAPLGG 518 (975)
T ss_pred eeeecccCccchhhHHHHhcCcCCC
Confidence 4455666678899999988888754
No 116
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=33.30 E-value=1.6e+03 Score=32.78 Aligned_cols=31 Identities=26% Similarity=0.332 Sum_probs=22.5
Q ss_pred hhhhhhhcccchhhhhccCCCccHHHHHHHHHHH
Q 000332 549 IIEGAYAWGFDIRNWQQLLNPLTWHEIFRQLALS 582 (1651)
Q Consensus 549 ~ve~a~~WGf~l~~w~~~LdslTWPEILRq~lls 582 (1651)
..+..+.| -..|+..+..++|..|++....-
T Consensus 488 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 518 (1353)
T TIGR02680 488 REGARLAW---VDAWQAQLRELTILAVDDQPGAL 518 (1353)
T ss_pred HHHHHHHH---hhhHHhhhccchhhhhcchhhhh
Confidence 34445566 56788999999999987766553
No 117
>COG2995 PqiA Uncharacterized paraquat-inducible protein A [Function unknown]
Probab=33.14 E-value=25 Score=43.64 Aligned_cols=42 Identities=26% Similarity=0.671 Sum_probs=30.0
Q ss_pred HHHHHhhhcccccchhhccchhhhccccccchhhhccccc-ccCCCCccc
Q 000332 1195 QWWMWRECFNSLSLCASKNEKTRCRQLLVICDVCLDSYLC-EDAHCPSCH 1243 (1651)
Q Consensus 1195 ~kWmw~~~~~~~~l~a~k~GkKr~~~~l~~C~~c~~~y~~-~e~hc~~CH 1243 (1651)
..|+|...+- ..+ .-...+-+..|..||-+.-- ++-+|++||
T Consensus 200 ~~~lwe~~~p-q~~------~~~~~~~~~~C~~C~~~~~~~~~~~CpRC~ 242 (418)
T COG2995 200 RRWLWERFYP-QTL------ATGAREGLRSCLCCHYILPHDAEPRCPRCG 242 (418)
T ss_pred HHHHHHhhcc-ccC------CCCCcccceecccccccCCHhhCCCCCCCC
Confidence 4899997663 111 13455667788999985544 899999999
No 118
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=32.22 E-value=1.1e+03 Score=29.52 Aligned_cols=30 Identities=33% Similarity=0.320 Sum_probs=12.9
Q ss_pred ccccccCCHHHHHHHHHHHHHHHhcchhhHHH
Q 000332 865 EGDYSHLSVEERLNALVALIGIANEGNSIRAV 896 (1651)
Q Consensus 865 ~g~Y~~LsveeKL~iL~~Lv~~ll~~ssVR~~ 896 (1651)
+...-+|+++ |.-|.+-+..+.+|.++-..
T Consensus 489 sp~s~dLSP~--L~d~~AA~Qla~~gps~~q~ 518 (561)
T KOG1103|consen 489 SPASMDLSPD--LEDLEAAIQLANAGPSSNQA 518 (561)
T ss_pred CCccCCCCcc--HHHHHHHHHHHhcCCchhHH
Confidence 3333444443 22344444455555554433
No 119
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=32.01 E-value=38 Score=45.06 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHhcchhhHHH
Q 000332 874 EERLNALVALIGIANEGNSIRAV 896 (1651)
Q Consensus 874 eeKL~iL~~Lv~~ll~~ssVR~~ 896 (1651)
++-++.|=.|+|-+.=-.+|...
T Consensus 496 ~~~~~tLFkl~HssNFNTsVQaL 518 (988)
T KOG2038|consen 496 EEQMKTLFKLTHSSNFNTSVQAL 518 (988)
T ss_pred HHHhHHHHHHHhhcccchhHHHH
Confidence 44556677777766555555543
No 120
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=31.08 E-value=40 Score=45.76 Aligned_cols=13 Identities=0% Similarity=0.005 Sum_probs=6.2
Q ss_pred cccccccCccccc
Q 000332 1518 ETFQGQMGHMVIP 1530 (1651)
Q Consensus 1518 ~~llg~~~~~~~~ 1530 (1651)
+.+|-.|++.-++
T Consensus 252 D~~vrel~fd~Ra 264 (840)
T PF04147_consen 252 DKLVRELAFDRRA 264 (840)
T ss_pred HHHHHHhcccccc
Confidence 3455555554433
No 121
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=30.73 E-value=34 Score=42.73 Aligned_cols=26 Identities=23% Similarity=0.687 Sum_probs=19.4
Q ss_pred ccccchhhhccc-ccccCCCCcccccc
Q 000332 1221 LLVICDVCLDSY-LCEDAHCPSCHRTF 1246 (1651)
Q Consensus 1221 ~l~~C~~c~~~y-~~~e~hc~~CH~tf 1246 (1651)
-+..|+.|+-+. -....+|++||.+.
T Consensus 214 ~~~~C~~Cd~~~~~~~~a~CpRC~~~L 240 (403)
T TIGR00155 214 KLRSCSACHTTILPAQEPVCPRCSTPL 240 (403)
T ss_pred CCCcCCCCCCccCCCCCcCCcCCCCcc
Confidence 356699999843 35567999999776
No 122
>PRK02363 DNA-directed RNA polymerase subunit delta; Reviewed
Probab=30.02 E-value=60 Score=34.87 Aligned_cols=74 Identities=20% Similarity=0.312 Sum_probs=53.6
Q ss_pred HHHHHHhhcCCCCccHHHHHHHhhhhccccCCCCCCcc---hhhHHhhccccchheeccCcceeeccCccCChhhHHHHH
Q 000332 651 AAFHVLSLEGSKGLTVLELADKIQKSGLRDLTTSKTPE---ASISVALTRDTKLFERIAPSTYCVRPAFRKDPADAEAIL 727 (1651)
Q Consensus 651 ~~f~vls~~G~~gl~v~ela~~~q~~~l~~~~tsk~pe---~~i~~~ls~D~~Lferiapsty~lr~~~rkdp~~~e~il 727 (1651)
.||.+|... .+-|+..+|...||+.... +-+... +-+|.-|.-|. -|..+-=++|+||.-|-.|--+ |.|.
T Consensus 8 vAy~iL~~~-~~~m~f~dL~~ev~~~~~~---s~e~~~~~iaq~YtdLn~DG-RFi~lG~n~WgLr~w~p~d~i~-e~~~ 81 (129)
T PRK02363 8 VAYEILKEK-KEPMSFYDLVNEIQKYLGK---SDEEIRERIAQFYTDLNLDG-RFISLGDNKWGLRSWYPVDEID-EEII 81 (129)
T ss_pred HHHHHHHHc-CCcccHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHhccC-CeeEcCCCceecccccChhhhh-hhhh
Confidence 588899887 6789999999999887542 111222 33466777888 7999999999999987777633 4555
Q ss_pred HHH
Q 000332 728 AAA 730 (1651)
Q Consensus 728 ~~a 730 (1651)
...
T Consensus 82 ~~~ 84 (129)
T PRK02363 82 PLE 84 (129)
T ss_pred cch
Confidence 544
No 123
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=29.98 E-value=2.3e+02 Score=36.72 Aligned_cols=11 Identities=27% Similarity=0.002 Sum_probs=4.1
Q ss_pred CCccccCCccc
Q 000332 104 EPLREDGPILG 114 (1651)
Q Consensus 104 ~~~~~d~p~~g 114 (1651)
.-|..+..+++
T Consensus 178 ~~l~vyr~~~~ 188 (591)
T KOG2505|consen 178 SVLSVYRCILH 188 (591)
T ss_pred ceEEEeeeccc
Confidence 33333333333
No 124
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=29.80 E-value=1.1e+03 Score=31.96 Aligned_cols=27 Identities=22% Similarity=-0.140 Sum_probs=14.9
Q ss_pred CCCCCCCCccccccccchhhHHHHHHH
Q 000332 69 SRGLMDDMPIVRRSYESQQSIMELRAI 95 (1651)
Q Consensus 69 ~~~~~~~~~~~~~~y~~~~~~~~~~~i 95 (1651)
+|-|++-...--|||+--+....++|+
T Consensus 64 ~g~v~s~kr~~fgf~~f~~~~~~~ra~ 90 (668)
T KOG2253|consen 64 SGFVPSWKRDKFGFCEFLKHIGDLRAS 90 (668)
T ss_pred CCcchhhhhhhhcccchhhHHHHHHHH
Confidence 444554444446777765555555554
No 125
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=29.55 E-value=28 Score=47.72 Aligned_cols=39 Identities=10% Similarity=0.128 Sum_probs=21.4
Q ss_pred HHHHhcCCCCcccccChhhh---cccccccCCCCcCCCCccc
Q 000332 412 DLAAASKGLSSIIHLDLETL---QNLDSFRDSLSVFPPKTVR 450 (1651)
Q Consensus 412 ELaA~sK~lpS~~~lD~Etl---qnl~~~Rd~Lp~fPp~~V~ 450 (1651)
...++..+.||+-....+.+ -+---|-..-|-||...|-
T Consensus 528 h~S~Geapm~sipavqsnsieffVGqQV~lkkaPLY~AGaVA 569 (3015)
T KOG0943|consen 528 HSSAGEAPMPSIPAVQSNSIEFFVGQQVCLKKAPLYHAGAVA 569 (3015)
T ss_pred ccccCcCCCCCcccccccceeEEecceeeeccCCCcccccee
Confidence 34566777777665554442 1111233445778777765
No 126
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=29.50 E-value=1.2e+03 Score=29.31 Aligned_cols=115 Identities=19% Similarity=0.126 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000332 279 KCDEARIAREVEANEIRIQKELERQDNLRRKNEERMRKEMEKHERERRKEEERLMRERQREEERSLREQKREMERREKFL 358 (1651)
Q Consensus 279 k~eeeRl~rE~E~~e~r~~kE~Ekqe~~RrkeEEr~rKE~Ek~eRE~rkeEEr~erEk~kEEER~~rEqrrEeER~eKe~ 358 (1651)
++.+..++.+.+....+.+-..+.-+-+--++-.+..-+..+..|..++-+..-++....+-+|+.+-++.+.++.-++.
T Consensus 230 ~~aEA~lAyelqaak~kq~i~~e~~qV~vVEr~kqvAv~eqEiqr~~~el~A~vR~paeAe~~r~~klaEAnk~~~~~qa 309 (428)
T KOG2668|consen 230 NKAEADLAYELQAAKTKQAIREEEIQVAVVERTKQVAVREQEIQRRVEELNATVRTPAEAEVERETKLAEANKELYNKQA 309 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000332 359 QKEYLRAEKRRLKEELRMEKQAAKRKVAIEKATARKMA 396 (1651)
Q Consensus 359 ekE~~r~Ek~r~kEEeRr~KEeerekaeeEka~~rreA 396 (1651)
+.| +|.-|+.-+...-+-+++.+++.|+-.++.++
T Consensus 310 qAE---A~~irk~geAEA~~ieA~akaeaeqm~~ka~v 344 (428)
T KOG2668|consen 310 QAE---AELIRKQGEAEAFAIEADAKAEAEQMAAKAEV 344 (428)
T ss_pred HHH---HHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHH
No 127
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.77 E-value=1.5e+03 Score=30.08 Aligned_cols=16 Identities=19% Similarity=0.163 Sum_probs=7.2
Q ss_pred ccccccCCCCC-cCCCC
Q 000332 114 GMEFDSLPPDA-FGAPI 129 (1651)
Q Consensus 114 g~~fd~~p~~a-f~~~i 129 (1651)
|..-+.+.+|- |.+||
T Consensus 58 g~~~~vV~gGg~~v~Pi 74 (548)
T COG2268 58 GGGQKVVRGGGAIVMPI 74 (548)
T ss_pred cCCccEEecCceEEecc
Confidence 34444444333 55555
No 128
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=28.75 E-value=1.5e+03 Score=30.07 Aligned_cols=32 Identities=25% Similarity=0.271 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 000332 383 RKVAIEKATARKMAKESMDLIEDEQLELMDLA 414 (1651)
Q Consensus 383 ekaeeEka~~rreAkE~aeliedErLEl~ELa 414 (1651)
+.++.||++-..+.++-++-|.+-++++.+++
T Consensus 427 rv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~ 458 (546)
T PF07888_consen 427 RVAQKEKEQLQEEKQELLEYIERLEQRLDKVA 458 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555555555555544444455543
No 129
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=26.94 E-value=1.2e+02 Score=43.05 Aligned_cols=6 Identities=17% Similarity=0.412 Sum_probs=2.2
Q ss_pred CCCCCC
Q 000332 256 DPYLLS 261 (1651)
Q Consensus 256 ~P~~~s 261 (1651)
.|.+.+
T Consensus 2074 ~p~~~a 2079 (2220)
T KOG3598|consen 2074 GPHFAA 2079 (2220)
T ss_pred CCcccC
Confidence 333333
No 130
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=26.83 E-value=1.2e+03 Score=31.48 Aligned_cols=31 Identities=26% Similarity=0.469 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhCCCccccCCccccccccCCCCCcC
Q 000332 92 LRAIACVEAQLGEPLREDGPILGMEFDSLPPDAFG 126 (1651)
Q Consensus 92 ~~~i~~~~~q~g~~~~~d~p~~g~~fd~~p~~af~ 126 (1651)
|.+|-.+=+++-+-|.+ -|+.||..=--.||
T Consensus 163 h~av~~~~reIee~L~~----agldyDl~vr~~~g 193 (652)
T COG2433 163 HGAVKRVVREIEEKLDE----AGLDYDLEVRESYG 193 (652)
T ss_pred HHHHHHHHHHHHHHHHh----cCCCceeEEeeccC
Confidence 44454444444444443 35667665444443
No 131
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=26.05 E-value=25 Score=29.85 Aligned_cols=25 Identities=28% Similarity=0.869 Sum_probs=17.0
Q ss_pred cccchhhhcccccccC---------CCCcccccc
Q 000332 1222 LVICDVCLDSYLCEDA---------HCPSCHRTF 1246 (1651)
Q Consensus 1222 l~~C~~c~~~y~~~e~---------hc~~CH~tf 1246 (1651)
..+|+.|+..|--+|. .|+.|..+|
T Consensus 2 ~i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 2 IITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVF 35 (36)
T ss_pred EEECCCCCCEEeCCHHHCCCCCcEEECCCCCCEe
Confidence 3567777777766654 677777665
No 132
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=25.71 E-value=1.5e+03 Score=29.02 Aligned_cols=10 Identities=20% Similarity=0.268 Sum_probs=5.6
Q ss_pred hHHHHHHHHH
Q 000332 469 NLLMVWRFFI 478 (1651)
Q Consensus 469 dLLmVweFL~ 478 (1651)
+|+.|.+.|.
T Consensus 205 el~~v~~~l~ 214 (445)
T PRK13428 205 ELVSVAKLLD 214 (445)
T ss_pred HHHHHHHHHc
Confidence 4666655554
No 133
>PF04747 DUF612: Protein of unknown function, DUF612; InterPro: IPR006836 This family includes several uncharacterised proteins from Caenorhabditis elegans.
Probab=24.43 E-value=6.9e+02 Score=31.58 Aligned_cols=11 Identities=36% Similarity=0.549 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 000332 337 QREEERSLREQ 347 (1651)
Q Consensus 337 ~kEEER~~rEq 347 (1651)
..+.|+.++++
T Consensus 123 ka~qe~~qke~ 133 (510)
T PF04747_consen 123 KAEQEKIQKEQ 133 (510)
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 134
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=24.25 E-value=49 Score=34.92 Aligned_cols=28 Identities=25% Similarity=0.659 Sum_probs=24.2
Q ss_pred chhhhcccccccCCCCccccccCC-CCCC
Q 000332 1225 CDVCLDSYLCEDAHCPSCHRTFGA-VDKS 1252 (1651)
Q Consensus 1225 C~~c~~~y~~~e~hc~~CH~tf~~-~dl~ 1252 (1651)
|+.|.+......-+|+.|++++.. |.+.
T Consensus 1 CPvCg~~l~vt~l~C~~C~t~i~G~F~l~ 29 (113)
T PF09862_consen 1 CPVCGGELVVTRLKCPSCGTEIEGEFELP 29 (113)
T ss_pred CCCCCCceEEEEEEcCCCCCEEEeeeccc
Confidence 999999999999999999999864 4443
No 135
>PLN02316 synthase/transferase
Probab=24.21 E-value=1.7e+02 Score=41.09 Aligned_cols=9 Identities=22% Similarity=0.637 Sum_probs=4.3
Q ss_pred cccchhhhhcc
Q 000332 556 WGFDIRNWQQL 566 (1651)
Q Consensus 556 WGf~l~~w~~~ 566 (1651)
||| +.|..-
T Consensus 514 g~~--NrWth~ 522 (1036)
T PLN02316 514 GSF--NRWTHR 522 (1036)
T ss_pred ccc--cCcCCC
Confidence 455 346443
No 136
>PLN02372 violaxanthin de-epoxidase
Probab=24.07 E-value=1e+03 Score=30.65 Aligned_cols=19 Identities=37% Similarity=0.473 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000332 282 EARIAREVEANEIRIQKEL 300 (1651)
Q Consensus 282 eeRl~rE~E~~e~r~~kE~ 300 (1651)
-+|+++..++-|+.+.||.
T Consensus 363 ~~~l~~~~e~~e~~i~~e~ 381 (455)
T PLN02372 363 LERLEKDVEEGEKTIVKEA 381 (455)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3466666666666555553
No 137
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=23.74 E-value=44 Score=44.98 Aligned_cols=9 Identities=11% Similarity=0.464 Sum_probs=3.8
Q ss_pred hhhhhhhhh
Q 000332 1302 ALEASWTDE 1310 (1651)
Q Consensus 1302 AL~~~W~~~ 1310 (1651)
.+...|...
T Consensus 507 ~~~~~~~~~ 515 (784)
T PF04931_consen 507 EQQQAWKTL 515 (784)
T ss_pred HHHHHHHHH
Confidence 344444433
No 138
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=23.41 E-value=3.8e+02 Score=34.41 Aligned_cols=14 Identities=21% Similarity=0.536 Sum_probs=7.4
Q ss_pred CCCCCCCCCCCCCC
Q 000332 252 FGTEDPYLLSDGQT 265 (1651)
Q Consensus 252 ~~~~~P~~~s~~~~ 265 (1651)
+|..+|++..++.+
T Consensus 486 gG~~gp~i~ada~S 499 (641)
T KOG3915|consen 486 GGFPGPFIFADALS 499 (641)
T ss_pred CCCCCcccccccch
Confidence 34456776554443
No 139
>PF11208 DUF2992: Protein of unknown function (DUF2992); InterPro: IPR016787 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.17 E-value=3.5e+02 Score=29.45 Aligned_cols=6 Identities=33% Similarity=0.556 Sum_probs=2.7
Q ss_pred ccCCCC
Q 000332 189 LHANEP 194 (1651)
Q Consensus 189 ~~~~~~ 194 (1651)
++|.||
T Consensus 28 ~FG~EP 33 (132)
T PF11208_consen 28 TFGAEP 33 (132)
T ss_pred eeCCCC
Confidence 444443
No 140
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=22.44 E-value=2.3e+02 Score=35.59 Aligned_cols=9 Identities=22% Similarity=0.412 Sum_probs=3.9
Q ss_pred cccCCCCCC
Q 000332 220 IFSSPNGGE 228 (1651)
Q Consensus 220 ~~~s~~~~~ 228 (1651)
++-||++.+
T Consensus 225 VmHsp~rk~ 233 (506)
T KOG2441|consen 225 VMHSPSRKM 233 (506)
T ss_pred cccCCCccc
Confidence 333444444
No 141
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=22.19 E-value=1.3e+03 Score=31.07 Aligned_cols=15 Identities=20% Similarity=0.213 Sum_probs=6.8
Q ss_pred ccccccCCCCccccc
Q 000332 208 VRVLSQQDKPAHIFS 222 (1651)
Q Consensus 208 ~~l~~q~~~~~~~~~ 222 (1651)
+-+|.-.|...++++
T Consensus 257 iAvldldGevl~~~S 271 (652)
T COG2433 257 IAVLDLDGEVLDLES 271 (652)
T ss_pred EEEEecCCcEEeeec
Confidence 333444444444444
No 142
>PLN02372 violaxanthin de-epoxidase
Probab=21.37 E-value=1e+03 Score=30.49 Aligned_cols=9 Identities=11% Similarity=0.187 Sum_probs=3.8
Q ss_pred ccCCCCCCC
Q 000332 165 YQSLSDQPY 173 (1651)
Q Consensus 165 ~q~~p~~~~ 173 (1651)
|..||=|-|
T Consensus 220 yD~FdCQ~h 228 (455)
T PLN02372 220 FDTFDCQLH 228 (455)
T ss_pred CCcccccce
Confidence 333444444
No 143
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=21.19 E-value=1.9e+03 Score=28.50 Aligned_cols=33 Identities=27% Similarity=0.426 Sum_probs=21.8
Q ss_pred HHHHHHHHHhhhhc--cccCCCHHHHHHHHhccCc
Q 000332 471 LMVWRFFITFADVL--GLWPFTLDEFVQAFHDHES 503 (1651)
Q Consensus 471 LmVweFL~sF~~vL--~LspFTLddf~qAL~~~dS 503 (1651)
|.-|.|+.+|..-| .++.++-++|++||...+.
T Consensus 441 lkn~ha~~~~~~Slaaeid~~sqdeLmqafqeqee 475 (502)
T KOG0982|consen 441 LKNWHATFSLFFSLAAEIDEMSQDELMQAFQEQEE 475 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33465555544444 4567889999999997543
No 144
>smart00017 OSTEO Osteopontin. Osteopontin is an acidic phosphorylated glycoprotein of about 40 Kd which is abundant in the mineral matrix of bones and which binds tightly to hydroxyapatite [1,2,3]. It is suggested that osteopontin might function as a cell attachment factor and could play a key role in the adhesion of osteoclasts to the mineral matrix of bone
Probab=20.89 E-value=84 Score=36.92 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=19.8
Q ss_pred cccccccccCCcccccccCCccccccCCCCCCCCCCcccCCc
Q 000332 1562 NSAEAVDSDDNVQAVEYEQGNWEVGFNGATNGWNRDVMEVSD 1603 (1651)
Q Consensus 1562 ~~~e~e~~ddn~q~~eyd~~~~~~gfng~~~~~s~~~~e~sd 1603 (1651)
|+..+|+-||+-|.+ |-+++|- |-+-|++-|
T Consensus 43 n~vSSEEtdD~kQet----------lPsksne-Shd~~DD~d 73 (287)
T smart00017 43 NAVSSEETDDFKQET----------LPSKSNE-SHEHTDDLD 73 (287)
T ss_pred ccccccccccccccc----------CCCCCcc-Chhhccccc
Confidence 344455667778888 8888777 555555433
No 145
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=20.60 E-value=2.3e+03 Score=29.31 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=25.1
Q ss_pred HHHHHHHHhCCCccccCCccccccccCCCCCcCCCCccccccccCCCCccccccccccc
Q 000332 94 AIACVEAQLGEPLREDGPILGMEFDSLPPDAFGAPIGSSEQQKRSGHPYESKIYDRYDT 152 (1651)
Q Consensus 94 ~i~~~~~q~g~~~~~d~p~~g~~fd~~p~~af~~~i~~~~q~k~P~~~~~~~iy~~~~~ 152 (1651)
++.+||=.||..+..++... + ...|.+||-. .+ =..|+..+|..|++
T Consensus 341 V~E~VeLel~l~~~~~~~~~------~-~~~~~cpI~L---~~--Dp~~~~ryy~~H~~ 387 (717)
T PF10168_consen 341 VLETVELELGLSLASEDEES------L-ELSYSCPIRL---HR--DPLNPDRYYCYHNA 387 (717)
T ss_pred EEEEEeeccccccCCCCCcc------c-cCCCCcceEE---Ee--cCCCCceEEEEecC
Confidence 44555656665554443110 1 3457888833 12 23456778888874
No 146
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=20.45 E-value=50 Score=34.51 Aligned_cols=24 Identities=25% Similarity=0.722 Sum_probs=11.5
Q ss_pred cchhhhcccc---cccCCCCccccccC
Q 000332 1224 ICDVCLDSYL---CEDAHCPSCHRTFG 1247 (1651)
Q Consensus 1224 ~C~~c~~~y~---~~e~hc~~CH~tf~ 1247 (1651)
+|+.|...|. ++-.+||.|..+|.
T Consensus 11 ~Cp~CG~kFYDLnk~PivCP~CG~~~~ 37 (108)
T PF09538_consen 11 TCPSCGAKFYDLNKDPIVCPKCGTEFP 37 (108)
T ss_pred cCCCCcchhccCCCCCccCCCCCCccC
Confidence 4555544332 34445555555553
No 147
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=20.18 E-value=60 Score=41.79 Aligned_cols=7 Identities=43% Similarity=1.056 Sum_probs=4.3
Q ss_pred hhccccc
Q 000332 1543 EEWGVGK 1549 (1651)
Q Consensus 1543 e~W~~e~ 1549 (1651)
-||++.|
T Consensus 190 VDWAV~K 196 (678)
T KOG0127|consen 190 VDWAVDK 196 (678)
T ss_pred Eeeeccc
Confidence 4566665
Done!