Query 000332
Match_columns 1651
No_of_seqs 474 out of 729
Neff 4.2
Searched_HMMs 29240
Date Tue Mar 26 15:55:57 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000332.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_112-116//hhsearch_pdb/000332hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i1j_A Moesin; FERM, coiled-co 1.0 1 1 44.3 5.0 28 82-111 115-142 (575)
2 3oja_B Anopheles plasmodium-re 1.0 1 1 28.4 16.2 17 407-423 571-587 (597)
3 1ij5_A Plasmodial specific LAV 1.0 1 1 20.2 8.4 31 648-678 254-285 (323)
4 2dfs_A Myosin-5A; myosin-V, in 1.0 1 1 19.8 19.8 13 102-114 96-108 (1080)
5 3vkg_A Dynein heavy chain, cyt 1.0 1 1 19.8 20.0 28 473-500 2196-2229(3245)
6 2y9y_B IOC3, ISWI one complex 1.0 1 1 19.3 9.7 70 427-502 19-91 (624)
7 1b34_A Protein (small nuclear 1.0 1 1 18.6 0.0 13 1386-1398 39-51 (119)
8 2zuo_A MVP, major vault protei 1.0 1 1 18.4 22.0 163 269-436 659-827 (861)
9 3oja_A Leucine-rich immune mol 1.0 1 1 18.3 20.2 133 275-408 323-486 (487)
10 3a01_A Homeodomain-containing 1.0 1 1 18.2 -3.1 29 2-32 64-93 (93)
No 1
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=1.00 E-value=1 Score=44.29 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=12.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 656346689899999999993997654689
Q 000332 82 SYESQQSIMELRAIACVEAQLGEPLREDGP 111 (1651)
Q Consensus 82 ~y~~~~~~~~~~~i~~~~~q~g~~~~~d~p 111 (1651)
|+-|.-..+.+.++. +.+.+|. +..+.+
T Consensus 115 l~c~~e~a~~LAAL~-lQae~GD-y~~~~~ 142 (575)
T 2i1j_A 115 IYCPPETSVLLASYA-VQARHGD-HNPAVH 142 (575)
T ss_dssp SCCCHHHHHHHHHHH-HHHHHCS-CCTTTC
T ss_pred CCCCHHHHHHHHHHH-HHHHHCC-CCHHHC
T ss_conf 989999999999989-8997467-882224
No 2
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=1.00 E-value=1 Score=28.37 Aligned_cols=17 Identities=12% Similarity=0.112 Sum_probs=8.7
Q ss_pred HHHHHHHHHHCCCCCCC
Q ss_conf 99999999740799743
Q 000332 407 QLELMDLAAASKGLSSI 423 (1651)
Q Consensus 407 ~LEl~ELaA~sK~lpS~ 423 (1651)
+.+++++...-+..|+.
T Consensus 571 ~~~~~~l~~~~~~~~~~ 587 (597)
T 3oja_B 571 RQKVKQLEAKKNRNPDT 587 (597)
T ss_dssp HHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHCCCCCC
T ss_conf 99999999874379763
No 3
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Probab=1.00 E-value=1 Score=20.24 Aligned_cols=31 Identities=13% Similarity=0.054 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHH-HHHCC
Q ss_conf 35789999844099985279998786-54044
Q 000332 648 VKFAAFHVLSLEGSKGLTVLELADKI-QKSGL 678 (1651)
Q Consensus 648 ~K~~~f~vls~~G~~gl~v~ela~~~-q~~~l 678 (1651)
.-..+|.++...|+.-++..|+..-+ ...|.
T Consensus 254 ~l~~~F~~~D~d~dG~Is~~El~~~l~~~~g~ 285 (323)
T 1ij5_A 254 VLRILYAFADFDKSGQLSKEEVQKVLEDAHIP 285 (323)
T ss_dssp HHHHHHHHTCSSSCSSEEHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 99999998689998974599999999987289
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=1.00 E-value=1 Score=19.82 Aligned_cols=13 Identities=15% Similarity=-0.174 Sum_probs=8.8
Q ss_pred HCCCCCCCCCCCC
Q ss_conf 3997654689655
Q 000332 102 LGEPLREDGPILG 114 (1651)
Q Consensus 102 ~g~~~~~d~p~~g 114 (1651)
-+..|.--||+|=
T Consensus 96 ~~~iYTy~G~iLi 108 (1080)
T 2dfs_A 96 SKLIYTYCGIVLV 108 (1080)
T ss_dssp TCCCEEEETTEEE
T ss_pred CCCCHHCCCCEEE
T ss_conf 5773102574268
No 5
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=19.78 Aligned_cols=28 Identities=11% Similarity=0.144 Sum_probs=13.0
Q ss_pred HHHHHHHHHH--HCCCCCCC----HHHHHHHHHC
Q ss_conf 9999998443--30556779----9999998702
Q 000332 473 VWRFFITFAD--VLGLWPFT----LDEFVQAFHD 500 (1651)
Q Consensus 473 VweFL~sF~~--vL~LspFT----LddLeqAL~~ 500 (1651)
...||.+... .|....|+ +..|+.||..
T Consensus 2196 a~~WIk~~~~~~~l~v~~~~d~~f~~~LE~ai~f 2229 (3245)
T 3vkg_A 2196 AMEFLMNQYADKKITKTSFLDSSFMKNLESALRF 2229 (3245)
T ss_dssp HHHHHHHHTGGGCCCCCCC-----HHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHC
T ss_conf 9999999746589459636856499999999985
No 6
>2y9y_B IOC3, ISWI one complex protein 3; transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_B
Probab=1.00 E-value=1 Score=19.29 Aligned_cols=70 Identities=13% Similarity=0.203 Sum_probs=45.3
Q ss_pred CHHHHCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC--CCCCCCHHHHHHHHHCCC
Q ss_conf 8232204644347-777689985455799877888877122565999999999844330--556779999999870247
Q 000332 427 DLETLQNLDSFRD-SLSVFPPKTVRLKRPFSVQPWSDSEENVGNLLMVWRFFITFADVL--GLWPFTLDEFVQAFHDHE 502 (1651)
Q Consensus 427 D~Etlqnl~~~Rd-~Lp~fPp~~V~Lk~P~ss~p~~ip~e~vgdLLmVweFL~sF~~vL--~LspFTLddLeqAL~~~d 502 (1651)
..++..|+..... +...++..+ +++-|. ..|.-.-+|++.|..|+.-|..+| .|..+++.||+..|.-+.
T Consensus 19 ~~nwsp~ipl~~sdfk~~~s~is-rlk~p~-----mk~~PYA~DIifImsFinKF~~vf~~~l~nlgpQDfE~GL~L~p 91 (624)
T 2y9y_B 19 PSNWTSVIPLLTSDFKNQYSVIS-RLKNPN-----MKPVPYAGDIIKLMAFINKFSSFFHSDLQNLSFQDFEVGLDLYP 91 (624)
T ss_dssp GGGGCSSCCBCCSGGGCSCCCCC-TTCCTT-----CEECTTHHHHHHHHHHHHHTTTTSCTTTTTCCHHHHHHHHTCCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHH-CCCCCC-----CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCC
T ss_conf 67888777530587764445765-147988-----76588775348999999998763567666758276631556788
No 7
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=1.00 E-value=1 Score=18.62 Aligned_cols=13 Identities=31% Similarity=0.317 Sum_probs=7.1
Q ss_pred HCCCCCCCCCCCC
Q ss_conf 1133101248999
Q 000332 1386 ELDASIMYVKPEK 1398 (1651)
Q Consensus 1386 ~LDa~I~y~~~~k 1398 (1651)
.|+.++-|....+
T Consensus 39 vL~d~~e~~~~~~ 51 (119)
T 1b34_A 39 HLKAVKMTLKNRE 51 (119)
T ss_dssp EEEEEEEECTTSC
T ss_pred EECCEEEECCCCC
T ss_conf 9610799657983
No 8
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=1.00 E-value=1 Score=18.44 Aligned_cols=163 Identities=16% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 48999999853499999999999999999999999999868999999--9989999999999999999999999999999
Q 000332 269 DAEQRMEKKRKCDEARIAREVEANEIRIQKELERQDNLRRKNEERMR--KEMEKHERERRKEEERLMRERQREEERSLRE 346 (1651)
Q Consensus 269 kel~KlErkrKkeeeRleREkEeqe~R~rkE~EKqe~~rrkeEEr~r--KE~Ek~eRErrkeEEr~~rEk~kEEER~~rE 346 (1651)
.....+.-+.+...+|.+-++.+|+.|-+-|..|..-+-+.|+.|.. +.+-+-..-..--..+.+.+.+.|..+.+-+
T Consensus 659 qlAiEItT~sqEa~Ar~~A~~~eQea~g~Lerqki~d~a~aE~~r~~Llel~a~s~aves~g~a~AeA~a~aea~~Ie~e 738 (861)
T 2zuo_A 659 QLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGE 738 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 88998876788998776888877876515788888879998999999999987666766333467777778789877657
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999999999999999999998999999999999999999999999998862112369999999999740799743346
Q 000332 347 QKREMERREKFLQKEYLRAEKRRLKEELRMEKQAAKRKVAIEKATARKMAKESMDLIEDEQLELMDLAAASKGLSSIIHL 426 (1651)
Q Consensus 347 qrrEeER~eke~ekE~~r~Ek~r~kEEeRk~KEeer~kaeeEka~~rreAkE~~eliedE~LEl~ELaA~sK~lpS~~~l 426 (1651)
..-+..+++-+..+-....|-++.+.....+-.-.+++.+.|...++..+. |+-...+.+--+-++--+..++.-
T Consensus 739 a~v~~a~l~a~a~~i~~~ael~~~~~~~~~el~~~~~~~ele~~k~~~la~-----ie~~kf~~~v~aig~~ti~~ia~A 813 (861)
T 2zuo_A 739 GSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLAN-----VEAKKFKEMTEALGPGTIRDLAVA 813 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHSCTTHHHHTGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHCHHHHHHHHHC
T ss_conf 788888866578755568899999999998899999987766998999889-----889999999985086889999861
Q ss_pred CHHH----HCCCCC
Q ss_conf 8232----204644
Q 000332 427 DLET----LQNLDS 436 (1651)
Q Consensus 427 D~Et----lqnl~~ 436 (1651)
+.|. +++|.+
T Consensus 814 gpe~q~kll~~Lgl 827 (861)
T 2zuo_A 814 GPEMQVKLLQSLGL 827 (861)
T ss_dssp CC------------
T ss_pred CHHHHHHHHHHCCC
T ss_conf 95889999873798
No 9
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=1.00 E-value=1 Score=18.32 Aligned_cols=133 Identities=12% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H---
Q ss_conf 99853499999999999--------------9999999999999998689999999989999999999999-----9---
Q 000332 275 EKKRKCDEARIAREVEA--------------NEIRIQKELERQDNLRRKNEERMRKEMEKHERERRKEEER-----L--- 332 (1651)
Q Consensus 275 ErkrKkeeeRleREkEe--------------qe~R~rkE~EKqe~~rrkeEEr~rKE~Ek~eRErrkeEEr-----~--- 332 (1651)
++.+..+.+.+.+-+.+ +..+.+++....++++..-++..-+..+.+..++++-.+. .
T Consensus 323 ~~eF~~Eve~L~~i~HrNLV~L~gyC~s~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 402 (487)
T 3oja_A 323 SETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHA 402 (487)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCC
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCC
T ss_conf 79999999987515210436578785485888899998889998889999999998888876411268775010210002
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---------99999999999999999999999999999999999989999999999999999999999999988621123
Q 000332 333 ---------MRERQREEERSLREQKREMERREKFLQKEYLRAEKRRLKEELRMEKQAAKRKVAIEKATARKMAKESMDLI 403 (1651)
Q Consensus 333 ---------~rEk~kEEER~~rEqrrEeER~eke~ekE~~r~Ek~r~kEEeRk~KEeer~kaeeEka~~rreAkE~~eli 403 (1651)
.....+.-|....+.+.|.++.++..++-+.+.++.++ |..|.+|+..+-..+.+.+.+.-..--..+..
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (487)
T 3oja_A 403 TEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAE-ENARLKKLNGEADLALASANATLQELVVREQN 481 (487)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 21357289999999999998899998750301335554347788887-76545531104444567454379999999998
Q ss_pred HHHHH
Q ss_conf 69999
Q 000332 404 EDEQL 408 (1651)
Q Consensus 404 edE~L 408 (1651)
-.+++
T Consensus 482 ~~~~~ 486 (487)
T 3oja_A 482 LASQL 486 (487)
T ss_dssp HHHHH
T ss_pred HHHHC
T ss_conf 88751
No 10
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=18.24 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC
Q ss_conf 42234446555799998223344-45557899
Q 000332 2 WFCHRRLKDKKEKENPPKKMRKN-VAVVMPES 32 (1651)
Q Consensus 2 wfchrrlkd~k~~~~~~~~~~~~-~~~~~~~~ 32 (1651)
||+.||-|+|+ .......... .+-++|.|
T Consensus 64 WFqNRR~k~kr--~~~~~~~~~~~~~~~~~~~ 93 (93)
T 3a01_A 64 WFQNRRTKWRR--QTAEEREAERQAANRLMLS 93 (93)
T ss_dssp HHHHHHHHHHH--HHTCC--------------
T ss_pred CCHHHHHHHHH--HHHHHHHHHHHHHHHHHCC
T ss_conf 11755203356--5378878999888776009
Done!