Query 000332
Match_columns 1651
No_of_seqs 474 out of 729
Neff 4.2
Searched_HMMs 13730
Date Tue Mar 26 16:04:26 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000332.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_112-116//hhsearch_scop/000332hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sa0e_ a.137.10.1 (E:) Stathm 75.6 0.86 6.2E-05 19.6 2.6 11 274-284 47-57 (138)
2 d2dlqa4 g.37.1.1 (A:8-34) GLI- 42.4 3.3 0.00024 15.3 0.6 18 1238-1260 2-19 (27)
3 d1ui5a1 a.4.1.9 (A:5-75) A-fac 9.9 29 0.0021 8.4 0.2 48 648-695 10-57 (71)
4 d2g7la1 a.4.1.9 (A:16-83) Puta 9.9 29 0.0021 8.4 2.7 54 642-695 3-56 (68)
5 d2oi8a1 a.4.1.9 (A:8-86) Putat 9.4 31 0.0023 8.2 1.5 33 644-676 10-42 (79)
6 d1zk8a1 a.4.1.9 (A:6-77) Trans 9.1 33 0.0024 8.0 1.8 51 643-693 3-53 (72)
7 d1zu1a2 g.37.1.4 (A:74-128) ds 8.9 34 0.0024 8.0 0.2 13 1236-1248 21-33 (55)
8 d1t56a1 a.4.1.9 (A:22-94) Ethr 6.6 49 0.0036 6.7 2.1 29 648-676 8-36 (73)
9 d1vdda_ e.49.1.1 (A:) Recombin 6.0 56 0.004 6.3 0.5 53 1177-1242 20-72 (199)
10 d1s05a_ a.24.3.2 (A:) Cytochro 6.0 53 0.0038 6.5 -0.1 18 1215-1232 107-124 (129)
No 1
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=75.56 E-value=0.86 Score=19.62 Aligned_cols=11 Identities=36% Similarity=0.549 Sum_probs=3.6
Q ss_pred HHHHHHHHHHH
Q ss_conf 99985349999
Q 000332 274 MEKKRKCDEAR 284 (1651)
Q Consensus 274 lErkrKkeeeR 284 (1651)
++.+.+..++|
T Consensus 47 ~q~K~~~aeeR 57 (138)
T d1sa0e_ 47 IQKKLEAAEER 57 (138)
T ss_dssp TTTTGGGTHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 2
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=42.37 E-value=3.3 Score=15.32 Aligned_cols=18 Identities=33% Similarity=0.851 Sum_probs=14.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 79866555677877764321023
Q 000332 1238 HCPSCHRTFGAVDKSSKFSEHSI 1260 (1651)
Q Consensus 1238 hc~~cH~tf~~~dl~~~fs~h~a 1260 (1651)
.|+.||++|.+ +|.+.+-
T Consensus 2 qcp~c~k~f~s-----kyylkvh 19 (27)
T d2dlqa4 2 ECPTCHKKFLS-----KYYLKVH 19 (27)
T ss_dssp CCTTTCCCCSS-----HHHHHHH
T ss_pred CCCCHHHHHHH-----HHHHHHC
T ss_conf 57614788887-----6755310
No 3
>d1ui5a1 a.4.1.9 (A:5-75) A-factor receptor homolog CprB {Streptomyces coelicolor [TaxId: 1902]}
Probab=9.89 E-value=29 Score=8.41 Aligned_cols=48 Identities=15% Similarity=0.009 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 357899998440999852799987865404445878788200368753
Q 000332 648 VKFAAFHVLSLEGSKGLTVLELADKIQKSGLRDLTTSKTPEASISVAL 695 (1651)
Q Consensus 648 ~K~~~f~vls~~G~~gl~v~ela~~~q~~~l~~~~t~~~pe~~i~~~l 695 (1651)
+--+|+.++...|-.+++|.+||+...++---...--.+-+.++.+.+
T Consensus 10 il~aa~~l~~~~G~~~~si~~Ia~~agvs~~~~y~~F~sK~~L~~~~~ 57 (71)
T d1ui5a1 10 IIGAAADLFDRRGYESTTLSEIVAHAGVTKGALYFHFAAKEDLAHAIL 57 (71)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHH
T ss_conf 999999999985946267999999879487699989829999999999
No 4
>d2g7la1 a.4.1.9 (A:16-83) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]}
Probab=9.87 E-value=29 Score=8.40 Aligned_cols=54 Identities=15% Similarity=0.116 Sum_probs=36.8
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 657772357899998440999852799987865404445878788200368753
Q 000332 642 KLTPGTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLRDLTTSKTPEASISVAL 695 (1651)
Q Consensus 642 rl~~gT~K~~~f~vls~~G~~gl~v~ela~~~q~~~l~~~~t~~~pe~~i~~~l 695 (1651)
.++--.+--+++.++...|..+++|.+||+...++---.-.--+.-+.++...+
T Consensus 3 ~~tr~~Il~aa~~l~~~~g~~~~si~~ia~~~gvs~~~~y~hF~~K~~L~~~~~ 56 (68)
T d2g7la1 3 ALSRRWIVDTAVALMRAEGLEKVTMRRLAQELDTGPASLYVYVANTAELHAAVL 56 (68)
T ss_dssp CCCHHHHHHHHHHHHHHHCSSSCCHHHHHHHTTSCHHHHTTTCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHH
T ss_conf 035999999999999984903078999999978287676287759999999999
No 5
>d2oi8a1 a.4.1.9 (A:8-86) Putative regulatory protein Sco4313 {Streptomyces coelicolor [TaxId: 1902]}
Probab=9.37 E-value=31 Score=8.18 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 777235789999844099985279998786540
Q 000332 644 TPGTVKFAAFHVLSLEGSKGLTVLELADKIQKS 676 (1651)
Q Consensus 644 ~~gT~K~~~f~vls~~G~~gl~v~ela~~~q~~ 676 (1651)
+--.+--+++.++...|-.++++.+||+...++
T Consensus 10 ~r~~il~aa~~l~~~~G~~~~t~~~Ia~~agvs 42 (79)
T d2oi8a1 10 VRAEIKDHAWEQIATAGASALSLNAIAKRMGMS 42 (79)
T ss_dssp HHHHHHHHHHHHHHHHCTTSCCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC
T ss_conf 999999999999998690306799999986799
No 6
>d1zk8a1 a.4.1.9 (A:6-77) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]}
Probab=9.06 E-value=33 Score=8.04 Aligned_cols=51 Identities=16% Similarity=0.077 Sum_probs=33.1
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf 577723578999984409998527999878654044458787882003687
Q 000332 643 LTPGTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLRDLTTSKTPEASISV 693 (1651)
Q Consensus 643 l~~gT~K~~~f~vls~~G~~gl~v~ela~~~q~~~l~~~~t~~~pe~~i~~ 693 (1651)
+|--.+--+++.+++..|-.+++|.+||+...++--..-.--+.-+.++..
T Consensus 3 ~t~e~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~slY~yF~~k~~L~~~ 53 (72)
T d1zk8a1 3 LTLQKIVETAAEIADANGVQEVTLASLAQTLGVRSPSLYNHVKGLQDVRKN 53 (72)
T ss_dssp CCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHTTTCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHH
T ss_conf 239999999999999869775669999999597999998988399999999
No 7
>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=8.88 E-value=34 Score=7.95 Aligned_cols=13 Identities=38% Similarity=0.997 Sum_probs=8.9
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 6779866555677
Q 000332 1236 DAHCPSCHRTFGA 1248 (1651)
Q Consensus 1236 e~hc~~cH~tf~~ 1248 (1651)
++.|+.|++||.+
T Consensus 21 nk~C~lCn~~Fns 33 (55)
T d1zu1a2 21 SKCCPVCNMTFSS 33 (55)
T ss_dssp TTEETTTTEECSS
T ss_pred HHHHHHHHCCCCC
T ss_conf 0234555431688
No 8
>d1t56a1 a.4.1.9 (A:22-94) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=6.65 E-value=49 Score=6.74 Aligned_cols=29 Identities=21% Similarity=0.093 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 35789999844099985279998786540
Q 000332 648 VKFAAFHVLSLEGSKGLTVLELADKIQKS 676 (1651)
Q Consensus 648 ~K~~~f~vls~~G~~gl~v~ela~~~q~~ 676 (1651)
+--+|+.++...|-.+++|.+||+...++
T Consensus 8 Il~aa~~l~~~~G~~~~t~~~Ia~~agvs 36 (73)
T d1t56a1 8 ILATAENLLEDRPLADISVDDLAKGAGIS 36 (73)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCC
T ss_conf 99999999997591507799999986988
No 9
>d1vdda_ e.49.1.1 (A:) Recombination protein RecR {Deinococcus radiodurans [TaxId: 1299]}
Probab=6.03 E-value=56 Score=6.34 Aligned_cols=53 Identities=19% Similarity=0.463 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHCCCCCCCHHHHCCCCCCCCCCCCC
Q ss_conf 240169999999967778999996310465300100101221000012101101245636779866
Q 000332 1177 LGRNEIEKKAALERFQDFQWWMWRECFNSLSLCASKNEKTRCRQLLVICDVCLDSYLCEDAHCPSC 1242 (1651)
Q Consensus 1177 lgr~~~E~~~~~~R~q~f~kWiw~~~~~~~~l~a~k~GkKr~~~~l~~c~~c~~~y~~~e~hc~~c 1242 (1651)
+|++..+ +-++.-++.-+..+-+ ...++ +.-.+.+..|..|++ +.+..-|.+|
T Consensus 20 IG~KsA~-Rla~~LL~~~~~~~~~------l~~~l----~~~~~~I~~C~~C~~--l~e~~~C~iC 72 (199)
T d1vdda_ 20 IGPKSAQ-RLAFHLFEQPREDIER------LASAL----LEAKRDLHVCPICFN--ITDAEKCDVC 72 (199)
T ss_dssp CCHHHHH-HHHHHHSSSCHHHHHH------HHHHH----HHHHHHCEECSSSCC--EESSSSCHHH
T ss_pred CCHHHHH-HHHHHHHCCCHHHHHH------HHHHH----HHHHHHHCCCCCCCC--CCCCCCCCCC
T ss_conf 8899999-9999998399889999------99999----999986098988770--4267774411
No 10
>d1s05a_ a.24.3.2 (A:) Cytochrome c-556 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=5.98 E-value=53 Score=6.51 Aligned_cols=18 Identities=17% Similarity=0.504 Sum_probs=0.0
Q ss_pred HHHHCCCCCCCHHHHCCC
Q ss_conf 122100001210110124
Q 000332 1215 KTRCRQLLVICDVCLDSY 1232 (1651)
Q Consensus 1215 kKr~~~~l~~c~~c~~~y 1232 (1651)
+..+..+..+|-.||+.|
T Consensus 107 ~~a~~~vg~tCksCH~~f 124 (129)
T d1s05a_ 107 KAAMQPIGKACGNCHENF 124 (129)
T ss_dssp HHHTTTTTHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999996799998998
Done!