Query 000333
Match_columns 1650
No_of_seqs 304 out of 359
Neff 4.9
Searched_HMMs 29240
Date Tue Mar 26 16:28:37 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000333.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_112-116//hhsearch_pdb/000333hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3biy_A Histone acetyltransfera 1.0 1 1 938.5 27.1 358 1031-1473 1-380 (380)
2 3p57_P Histone acetyltransfera 1.0 1 1 226.1 11.9 106 1536-1645 7-112 (112)
3 3t92_A Histone acetyltransfera 1.0 1 1 214.4 9.5 110 1532-1641 4-121 (121)
4 1l3e_B P300 protein; protein-p 1.0 1 1 177.1 -1.5 87 577-664 7-100 (101)
5 3t92_A Histone acetyltransfera 1.0 1 1 126.2 4.7 89 579-669 5-97 (121)
6 1tot_A CREB-binding protein; z 1.0 1 1 88.5 1.0 51 1469-1524 1-51 (52)
7 3p57_P Histone acetyltransfera 1.0 1 1 81.4 6.6 87 580-668 5-95 (112)
8 1l3e_B P300 protein; protein-p 1.0 1 1 81.3 5.9 77 1540-1619 15-99 (101)
9 2dip_A Zinc finger SWIM domain 1.0 1 1 69.7 2.8 47 1472-1520 29-75 (98)
10 2e5r_A Dystrobrevin alpha; ZZ 1.0 1 1 68.8 2.6 45 1475-1519 12-59 (63)
No 1
>3biy_A Histone acetyltransferase P300; P300 HAT, bisubstrate inhibitor, protein-inhibitor complex; HET: 01K; 1.70A {Homo sapiens}
Probab=1.00 E-value=1 Score=938.52 Aligned_cols=358 Identities=41% Similarity=0.747 Sum_probs=308.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHC-CCCCCC
Q ss_conf 3477879988123899999999999999999998278877888985479999731320134327799864305-999843
Q 000333 1031 VLGAKDLPRTILSDHIEHRLFRRLKQERQERARIQGKSYDEVPGAEALVIRVVSSVDKKLEVKQRFLEIFQEE-NYPTEF 1109 (1650)
Q Consensus 1031 ~~~AkdLp~t~LS~fiE~rln~~L~~~~~~~a~~~g~~~~ev~~a~~l~vRvvss~~k~~~Vk~~f~~~f~e~-~yp~~f 1109 (1650)
.|+|+|||+|+||+|||+|||++|+++ ..++++.|+||||++++|+++|+++|..+|.+. +||++|
T Consensus 1 ~f~a~~Lp~t~LS~~lE~rln~~L~~~-------------~~~~~~~v~IRvvss~~k~~ev~~~~~~~f~~~~~~~~~f 67 (380)
T 3biy_A 1 KFSAKRLPSTRLGTFLENRVNDFLRRQ-------------NHPESGEVTVRVVHASDKTVEVKPGMKARFVDSGEMAESF 67 (380)
T ss_dssp CCCSTTSCCCHHHHHHHHHHHHHHHHH-------------TCTTCCCEEEEEEEEEEEEEECCTTHHHHTTTTTSSCSEE
T ss_pred CCCHHHCCCCHHHHHHHHHHHHHHHHH-------------CCCCCCCEEEEEEEEECCEEECCHHHHHHHCCCCCCCCCC
T ss_conf 988033888737899999999999862-------------5565575579999742230121611787613213577345
Q ss_pred CCEEEEEEEEEEECCEEEEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 64047999999858868999999866227889999974199982355444444311123310357999999999999998
Q 000333 1110 PYKSKVVLLFQKIEGVEVCLFGMYVQEFGSECQFPNQRRVYLSYLDSVKYFRPEIKAVTGEALRTFVYHEILIGYLEYCK 1189 (1650)
Q Consensus 1110 ~YrsK~I~vFQkidGvDV~fF~M~VqEYg~~c~~pn~r~vyIsYLDSV~yf~P~~~~~~g~~~Rt~VYheIL~~Yl~y~k 1189 (1650)
|||+|||+|||+|||||||||+|||||||++||.||+|||||+|||||+||+|+ .+||+||||||||||+|||
T Consensus 68 ~YrsK~I~vFQ~idgvDV~fF~m~vqEy~~~c~~pn~r~vyI~YLDSV~yf~p~-------~~Rt~vY~eill~Yl~y~k 140 (380)
T 3biy_A 68 PYRTKALFAFEEIDGVDLCFFGMHVQEYGSDCPPPNQRRVYISYLDSVHFFRPK-------CLRTAVYHEILIGYLEYVK 140 (380)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEECTTSCTTSTTEEEEEEEEECSCCSSG-------GGHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEEEECCEEEEEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCC-------HHHHHHHHHHHHHHHHHHH
T ss_conf 513679999997589379999999471155678988726999871442235730-------2678999999999999998
Q ss_pred HCCCCEEEEEECCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 60974899982799999971461699999999925799999999999885290963100143420154543444676646
Q 000333 1190 LRGFTSCYIWACPPLKGEDYILYCHPEIQKTPKSDKLREWYLAMLRKAAKENIVVDLTNLYDHFFVSTGECRAKVTAARL 1269 (1650)
Q Consensus 1190 ~~GF~~ahiWAcPP~~GdDYIF~~HP~~Qk~p~~~~L~~WY~~mL~ka~~egiV~~~~n~yd~~f~~~~~~~~~~~~~~l 1269 (1650)
++||++||||||||.+||||||||||++|++|++++|++||++||++|+++|||.+|+|||++.+.. .+.+|++|
T Consensus 141 ~~Gf~~~hiWAcPP~~GDDYIF~~HP~~Qk~p~~~rL~~WY~~mL~kg~~~giv~~~~~~~~~~~~~-----~~~~~~~l 215 (380)
T 3biy_A 141 KLGYTTGHIWACPPSEGDDYIFHCHPPDQKIPKPKRLQEWYKKMLDKAVSERIVHDYKDIFKQATED-----RLTSAKEL 215 (380)
T ss_dssp HHTCCEEEEECCCCCTTCCSSSSSCCTTCCCCCHHHHHHHHHHHHHHHHHTTSCCEEEEHHHHHHHH-----TCCCGGGS
T ss_pred HCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHCCC-----CCCCHHHC
T ss_conf 3797368887069989984588407410678880799999999999898759354056686531455-----55887558
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCCCC-----------CCC---CHHHHHHHHHHCC-------CCCCCCCCCHHHH
Q ss_conf 854599962789999999972000011134-----------664---0234389877429-------9888888641079
Q 000333 1270 PYFDGDYWPGAAEDLIYQIRQDEDGKKQNK-----------GIT---KKTITKRALKASG-------QTDLSGNASKDLL 1328 (1650)
Q Consensus 1270 PyF~Gd~Wp~~~E~ii~~l~~e~~~~k~~k-----------~~~---kk~~~kr~~k~~g-------~~~~~~~~~kd~~ 1328 (1650)
|||+|||||+++|++|++|++|++++|..+ |.. ||...|++.++.+ +.....+.+. .
T Consensus 216 PyF~gd~W~~~~e~~i~el~~e~~~rk~~~~~~~~~~~~~~~~~k~~kkk~~kk~~~~k~~~~~~~~k~~~~~~~~~--~ 293 (380)
T 3biy_A 216 PYFEGDFWPNVLEESIKELEQEEEERKREENTSNESTDVTKGDSKNAKKKNNKKTSKNKSSLSRGNKKKPGMPNVSN--D 293 (380)
T ss_dssp CCCTTCHHHHHHHHHHCC--------------------------------------------------------------
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCH--H
T ss_conf 84178756799999999998877764310012222244545404665530144443343202232001468876424--8
Q ss_pred HHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99985200046854206765265674353200038504650022345442000344689740112247898964432122
Q 000333 1329 LMHKLGETICPMKEDFIMVHLQHACNHCCILMVSGSRHVCEQCTKLNKNFQLCDKCFEAEKKREDRERHPVNSREVHILE 1408 (1650)
Q Consensus 1329 lm~klg~~i~~~Ke~f~v~~Lq~~C~~C~~~iv~~~rw~c~~c~~~~k~f~lC~~Cy~~e~~~~~~~~hp~~~~~~h~l~ 1408 (1650)
||+||+++|++||||||||+|+... . .+.
T Consensus 294 l~~kl~~~~~~~ke~ff~i~L~~~~---------------------------------------------~----~~~-- 322 (380)
T 3biy_A 294 LSQKLYATMEKHKEVFFVIRLIAGP---------------------------------------------A----ANS-- 322 (380)
T ss_dssp -CHHHHHHHHHTGGGEEEEESSCGG---------------------------------------------G----GTS--
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCC---------------------------------------------C----CCC--
T ss_conf 9999999987304533999954776---------------------------------------------5----567--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHCCCCCCCC
Q ss_conf 45568999998878733347345527999987430898843123402321367876118998733
Q 000333 1409 EVPVTDVPADTKDKDEILESEFFDTRQAFLSLCQGNHYQYDTLRRAKHSSMMVLYHLHNPTAPAF 1473 (1650)
Q Consensus 1409 ~~~v~~vp~~t~D~D~~l~seffdtR~~FL~lcq~nHyQFDtLRRAKhSSMMiLyhLHn~~~~~f 1473 (1650)
+| .+.|+|++|+|+|||+|++||++||+|||||||||||||||||||||||||++|+|
T Consensus 323 ------lp-~~~D~D~~~~~e~~d~R~~FL~~c~~~h~qF~tLRRAK~SSm~~L~~Lhn~~~~~~ 380 (380)
T 3biy_A 323 ------LP-PIVDPDPLIPCDLMDGRDAFLTLARDRHLEFSSLRRAQWSTGCMLVELHTQSQDRF 380 (380)
T ss_dssp ------CC-CCCCCSCCBCCGGGSSSHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHCCC-
T ss_pred ------CC-CCCCCCCCEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf ------89-98998754204200689999999998387757156777769999999648888989
No 2
>3p57_P Histone acetyltransferase P300; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3io2_A
Probab=1.00 E-value=1 Score=226.13 Aligned_cols=106 Identities=39% Similarity=0.813 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf 99999999999988830499999998015979999996310253258998537999999999984069899898884438
Q 000333 1536 LRVLQLRKMLDLLVHASQCRSPHCQYPNCRKVKGLFRHGIQCKTRASGGCVLCKKMWYLLQLHARACKESECHVPRCRDL 1615 (1650)
Q Consensus 1536 ~r~~qL~~~l~~L~HA~~C~~a~C~~~~C~kmK~li~H~~~C~~R~~ggC~~Ckr~w~Ll~~HAk~C~~~~C~VP~C~~l 1615 (1650)
.|.++|+++|++|+||++|++++|.+++|.+||+||+|+++|++|++|||++|++||+||+|||++|++++|+||+|++|
T Consensus 7 ~r~~~iq~~l~~L~HA~~C~~~~C~~~~C~~mK~ll~H~~~C~~r~~~gC~~Ck~~~~Ll~~HAk~C~~~~C~VP~C~~i 86 (112)
T 3p57_P 7 SRRLSIQRCIQSLVHACQCRNANCSLPSCQKMKRVVQHTKGCKRKTNGGCPICKQLIALCCYHAKHCQENKCPVPFCLNI 86 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCTTCCCTTHHHHHHHHTCTTCC-------CCCHHHHHHHHHHHHTTCCSTTCCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHH
T ss_conf 89999999999999884198999997055999999999988568799998200999999999998739899999867899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999987489999999999999989987
Q 000333 1616 KEHLRRLQQQSDTRRRQAVMEMMRQRAAEV 1645 (1650)
Q Consensus 1616 K~~~~~~q~q~~~rrr~~v~~~~r~r~~~~ 1645 (1650)
|+++++++.| +|+.+.+|||+|||.|
T Consensus 87 K~~~~q~q~q----~r~~~~~~~rrr~a~~ 112 (112)
T 3p57_P 87 KQKLRQQQLQ----HRLQQAQMLRRRMASM 112 (112)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHCC
T ss_conf 9999999888----9999999999988639
No 3
>3t92_A Histone acetyltransferase P300 TAZ2-ccaat/enhance protein epsilon; TAZ2 domain, zinc finger, transcription, 300/CBP, C/EBP PROT transferase; HET: TCE TAM; 1.50A {Homo sapiens} PDB: 2k8f_A 2ka6_A 2kje_A 1f81_A
Probab=1.00 E-value=1 Score=214.42 Aligned_cols=110 Identities=33% Similarity=0.754 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999999999999998883049999999801597999999631025325899853799999999998406989989888
Q 000333 1532 EARQLRVLQLRKMLDLLVHASQCRSPHCQYPNCRKVKGLFRHGIQCKTRASGGCVLCKKMWYLLQLHARACKESECHVPR 1611 (1650)
Q Consensus 1532 ~~~q~r~~qL~~~l~~L~HA~~C~~a~C~~~~C~kmK~li~H~~~C~~R~~ggC~~Ckr~w~Ll~~HAk~C~~~~C~VP~ 1611 (1650)
+.+..|.++|+++|++|+||+.|++++|.+|+|.+||.||+|+..|+.|..+||++|+++|+||++||++|++.+|+|||
T Consensus 4 ~~~e~R~~~iq~~l~~L~HA~~C~~~~C~~p~C~~mK~ll~H~~~C~~r~~~~c~~C~~~~~Ll~~Hak~C~~~~C~VP~ 83 (121)
T 3t92_A 4 SPGDSRRLSIQRAIQSLVHAAQCRNANCSLPSCQKMKRVVQHTKGCKRKTNGGCPICKQLIALAAYHAKHCQENKCPVPF 83 (121)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHHCSSTTTTTCHHHHHHHHHHHHHHTTCCCTTCCSTT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 56999999999999999977409378999704389999999999806899999974499999999999767999999986
Q ss_pred CHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Q ss_conf 44389999999874--------8999999999999998
Q 000333 1612 CRDLKEHLRRLQQQ--------SDTRRRQAVMEMMRQR 1641 (1650)
Q Consensus 1612 C~~lK~~~~~~q~q--------~~~rrr~~v~~~~r~r 1641 (1650)
|++||++++++|++ .|++|+++|.++++++
T Consensus 84 C~~iK~~~~~qq~q~~~~~~~~~~~~~~~l~~~~~~~~ 121 (121)
T 3t92_A 84 CLNIKQKLRQQQLEASIDLSAYIESGEEQLLSDLFAVK 121 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 58899999999999988887878999999999998239
No 4
>1l3e_B P300 protein; protein-protein complex, transcription; NMR {Homo sapiens} SCOP: g.53.1.1 PDB: 1p4q_B 1r8u_B 2ka4_A 1l8c_A 1u2n_A 1liq_A
Probab=1.00 E-value=1 Score=177.14 Aligned_cols=87 Identities=33% Similarity=0.715 Sum_probs=77.9
Q ss_pred CCCHHHHHHHHHCHHHHHHHCCCCCCCC------CCCCCCCCHHHHHHHHCCCCCCC-CCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 4760456644000223432115258998------88778780669999850012699-9999987511388999840469
Q 000333 577 NGNRDRQFRNQQRWLLFLRHARRCAAPE------GKCQDVNCITVQKLWRHMDNCTS-SQCPYPRCHHSKILIHHHKHCR 649 (1650)
Q Consensus 577 ~~~~e~~~~~qqrwLl~L~HA~~C~~~~------~~C~~~~C~~~k~ll~H~~~C~~-~~C~~~~C~ssr~ll~H~k~C~ 649 (1650)
..++++...+|+ +|+||+||++|..++ +.|.+++|.+||+||.||.+|++ ++|+|+||.+||+||+||++|+
T Consensus 7 ~~dp~~~k~iqq-qL~lL~HA~kC~~~e~~~g~~~~C~lp~C~~mK~ll~Hm~~C~~g~~C~~~~C~sSr~ii~H~k~C~ 85 (101)
T 1l3e_B 7 TADPEKRKLIQQ-QLVLLLHAHKCQRREQANGEVRQCNLPHCRTMKNVLNHMTHCQSGKSCQVAHCASSRQIISHWKNCT 85 (101)
T ss_dssp CCCGGGHHHHHH-HHHHHHHHHHHHHHHTTTSSCCCCSCHHHHHHHHHHHHHTTCCSCSSSSCHHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHH-HHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 899799999999-9999999988488202688688889976389999999998763889999998887999999998689
Q ss_pred CCCCCCCHHHHHHHH
Q ss_conf 999986313516999
Q 000333 650 DPSCPVCVPVKNYLQ 664 (1650)
Q Consensus 650 ~~~CpvC~PVr~~v~ 664 (1650)
+.+||||.|||.+.+
T Consensus 86 ~~~CpVC~pvk~~~~ 100 (101)
T 1l3e_B 86 RHDCPVCLPLKNAGD 100 (101)
T ss_dssp SSCCTTHHHHHCCSC
T ss_pred CCCCCCCHHHHHHHH
T ss_conf 999986788996430
No 5
>3t92_A Histone acetyltransferase P300 TAZ2-ccaat/enhance protein epsilon; TAZ2 domain, zinc finger, transcription, 300/CBP, C/EBP PROT transferase; HET: TCE TAM; 1.50A {Homo sapiens} PDB: 2k8f_A 2ka6_A 2kje_A 1f81_A
Probab=1.00 E-value=1 Score=126.21 Aligned_cols=89 Identities=29% Similarity=0.582 Sum_probs=80.2
Q ss_pred CHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC-CCCCCCCCCCHHHHH-HHHHCCCCCCCCC-
Q ss_conf 6045664400022343211525899888778780669999850012699-999998751138899-9840469999986-
Q 000333 579 NRDRQFRNQQRWLLFLRHARRCAAPEGKCQDVNCITVQKLWRHMDNCTS-SQCPYPRCHHSKILI-HHHKHCRDPSCPV- 655 (1650)
Q Consensus 579 ~~e~~~~~qqrwLl~L~HA~~C~~~~~~C~~~~C~~~k~ll~H~~~C~~-~~C~~~~C~ssr~ll-~H~k~C~~~~Cpv- 655 (1650)
..|......++||.+|+||.+|..+ .|..|+|..||.||.|+..|+. +.|.+++|..++.|| .||+.|.+.+|||
T Consensus 5 ~~e~R~~~iq~~l~~L~HA~~C~~~--~C~~p~C~~mK~ll~H~~~C~~r~~~~c~~C~~~~~Ll~~Hak~C~~~~C~VP 82 (121)
T 3t92_A 5 PGDSRRLSIQRAIQSLVHAAQCRNA--NCSLPSCQKMKRVVQHTKGCKRKTNGGCPICKQLIALAAYHAKHCQENKCPVP 82 (121)
T ss_dssp --CHHHHHHHHHHHHHHHHHHCCCT--TCCCHHHHHHHHHHHHHHHCSSTTTTTCHHHHHHHHHHHHHHTTCCCTTCCST
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 6999999999999999977409378--99970438999999999980689999997449999999999976799999998
Q ss_pred -CHHHHHHHHHHHHH
Q ss_conf -31351699999997
Q 000333 656 -CVPVKNYLQQQKER 669 (1650)
Q Consensus 656 -C~PVr~~v~k~~qq 669 (1650)
|.|+|..+++..++
T Consensus 83 ~C~~iK~~~~~qq~q 97 (121)
T 3t92_A 83 FCLNIKQKLRQQQLE 97 (121)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 658899999999999
No 6
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=1.00 E-value=1 Score=88.54 Aligned_cols=51 Identities=37% Similarity=0.876 Sum_probs=43.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 98733311433436777789321167899732112110489998999876899964
Q 000333 1469 TAPAFVTTCNICHLDIETGQGWRCEVCPDYDVCNACYQKDGGIDHPHKLTNHPSTA 1524 (1650)
Q Consensus 1469 ~~~~f~~tCn~C~~~I~~~~~whC~~C~DfDLC~~Cy~k~g~~~H~Hkl~~~p~~~ 1524 (1650)
+.++|.++|+.|..+| |.||||.+|+|||||.+||.+. .|+|+|.+++...
T Consensus 1 ~~~~~~~~Cd~C~~~i--g~R~~C~~C~dyDLC~~C~~~~---~H~H~m~~~~~~l 51 (52)
T 1tot_A 1 GQDRFVYTCNECKHHV--ETRWHCTVCEDYDLCINCYNTK---SHTHKMVKWGLGL 51 (52)
T ss_dssp CBCSSCEEETTTTEEE--SSEEEESSSSSCEECHHHHHHH---CCCSSEEEECSSC
T ss_pred CCCCCEEECCCCCCCC--CCEEECCCCCCCHHHHHHHHCC---CCCCCEEEECCCC
T ss_conf 9983788998988988--4547848999853499998379---9888648836888
No 7
>3p57_P Histone acetyltransferase P300; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3io2_A
Probab=1.00 E-value=1 Score=81.37 Aligned_cols=87 Identities=30% Similarity=0.601 Sum_probs=76.5
Q ss_pred HHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC-CCCCCCCCCCHHHH-HHHHHCCCCCCCCC--
Q ss_conf 045664400022343211525899888778780669999850012699-99999875113889-99840469999986--
Q 000333 580 RDRQFRNQQRWLLFLRHARRCAAPEGKCQDVNCITVQKLWRHMDNCTS-SQCPYPRCHHSKIL-IHHHKHCRDPSCPV-- 655 (1650)
Q Consensus 580 ~e~~~~~qqrwLl~L~HA~~C~~~~~~C~~~~C~~~k~ll~H~~~C~~-~~C~~~~C~ssr~l-l~H~k~C~~~~Cpv-- 655 (1650)
.|......+++|.+|.||..|.. ..|..+.|..||.|+.|+..|+. .....++|...-.| ..|++.|.+.+|+|
T Consensus 5 ~~~r~~~iq~~l~~L~HA~~C~~--~~C~~~~C~~mK~ll~H~~~C~~r~~~gC~~Ck~~~~Ll~~HAk~C~~~~C~VP~ 82 (112)
T 3p57_P 5 GDSRRLSIQRCIQSLVHACQCRN--ANCSLPSCQKMKRVVQHTKGCKRKTNGGCPICKQLIALCCYHAKHCQENKCPVPF 82 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCC--TTCCCTTHHHHHHHHTCTTCC-------CCCHHHHHHHHHHHHTTCCSTTCCSTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCC--CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 77899999999999998841989--9999705599999999998856879999820099999999999873989999986
Q ss_pred CHHHHHHHHHHHH
Q ss_conf 3135169999999
Q 000333 656 CVPVKNYLQQQKE 668 (1650)
Q Consensus 656 C~PVr~~v~k~~q 668 (1650)
|..+|..+++...
T Consensus 83 C~~iK~~~~q~q~ 95 (112)
T 3p57_P 83 CLNIKQKLRQQQL 95 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
T ss_conf 7899999999988
No 8
>1l3e_B P300 protein; protein-protein complex, transcription; NMR {Homo sapiens} SCOP: g.53.1.1 PDB: 1p4q_B 1r8u_B 2ka4_A 1l8c_A 1u2n_A 1liq_A
Probab=1.00 E-value=1 Score=81.25 Aligned_cols=77 Identities=29% Similarity=0.657 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHCCCCC--------CCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999999888304999--------9999801597999999631025325899853799999999998406989989888
Q 000333 1540 QLRKMLDLLVHASQCRS--------PHCQYPNCRKVKGLFRHGIQCKTRASGGCVLCKKMWYLLQLHARACKESECHVPR 1611 (1650)
Q Consensus 1540 qL~~~l~~L~HA~~C~~--------a~C~~~~C~kmK~li~H~~~C~~R~~ggC~~Ckr~w~Ll~~HAk~C~~~~C~VP~ 1611 (1650)
.|++-|.+|.||..|.. +.|..+.|..||.|+.|...|+....-..+.|.-.++|+ .|.+.|.+.+|+|
T Consensus 15 ~iqqqL~lL~HA~kC~~~e~~~g~~~~C~lp~C~~mK~ll~Hm~~C~~g~~C~~~~C~sSr~ii-~H~k~C~~~~CpV-- 91 (101)
T 1l3e_B 15 LIQQQLVLLLHAHKCQRREQANGEVRQCNLPHCRTMKNVLNHMTHCQSGKSCQVAHCASSRQII-SHWKNCTRHDCPV-- 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSCCCCSCHHHHHHHHHHHHHTTCCSCSSSSCHHHHHHHHHH-HHHHHCCSSCCTT--
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH-HHHHHCCCCCCCC--
T ss_conf 9999999999998848820268868888997638999999999876388999999888799999-9998689999986--
Q ss_pred CHHHHHHH
Q ss_conf 44389999
Q 000333 1612 CRDLKEHL 1619 (1650)
Q Consensus 1612 C~~lK~~~ 1619 (1650)
|..+|+.+
T Consensus 92 C~pvk~~~ 99 (101)
T 1l3e_B 92 CLPLKNAG 99 (101)
T ss_dssp HHHHHCCS
T ss_pred CHHHHHHH
T ss_conf 78899643
No 9
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=1.00 E-value=1 Score=69.75 Aligned_cols=47 Identities=23% Similarity=0.587 Sum_probs=38.1
Q ss_pred CCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHCCCCCCCCCCCCCCC
Q ss_conf 3331143343677778932116789973211211048999899987689
Q 000333 1472 AFVTTCNICHLDIETGQGWRCEVCPDYDVCNACYQKDGGIDHPHKLTNH 1520 (1650)
Q Consensus 1472 ~f~~tCn~C~~~I~~~~~whC~~C~DfDLC~~Cy~k~g~~~H~Hkl~~~ 1520 (1650)
...++|+.|......|.||+|.+|+|||||..||.+ +.| -.|.+..+
T Consensus 29 H~gv~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~-~~H-~~H~f~~i 75 (98)
T 2dip_A 29 HLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDS-YCH-LSHTFTFR 75 (98)
T ss_dssp CCCCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHT-TSG-GGSCEEEC
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHCC-CCC-CCCCEEEE
T ss_conf 698798698888730675788879993078897746-987-88981681
No 10
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=68.81 Aligned_cols=45 Identities=24% Similarity=0.815 Sum_probs=35.7
Q ss_pred CCCCCCCCCCCCCCCEECCCCCCCCCCHHHHCCCC---CCCCCCCCCC
Q ss_conf 11433436777789321167899732112110489---9989998768
Q 000333 1475 TTCNICHLDIETGQGWRCEVCPDYDVCNACYQKDG---GIDHPHKLTN 1519 (1650)
Q Consensus 1475 ~tCn~C~~~I~~~~~whC~~C~DfDLC~~Cy~k~g---~~~H~Hkl~~ 1519 (1650)
++|+.|......|.||+|.+|+|||||..||.+.. .|.-.|+|..
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H~~~~ 59 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKE 59 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCCCSSSCTTCCEEE
T ss_pred CCCCCCCCCCEECCEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCEEE
T ss_conf 899299886263523883679984147888868776799999878899
Done!