Query 000334
Match_columns 1646
No_of_seqs 287 out of 1212
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 04:46:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000334.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000334hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1879 UDP-glucose:glycoprote 100.0 7E-303 1E-307 2754.6 109.7 1424 29-1614 17-1457(1470)
2 PF06427 UDP-g_GGTase: UDP-glu 100.0 1.9E-53 4.1E-58 470.1 19.6 205 1012-1217 1-211 (211)
3 cd06432 GT8_HUGT1_C_like The C 100.0 9.1E-52 2E-56 472.6 20.2 248 1339-1586 1-248 (248)
4 cd00505 Glyco_transf_8 Members 100.0 6.3E-37 1.4E-41 351.6 19.7 236 1339-1585 1-245 (246)
5 PRK15171 lipopolysaccharide 1, 100.0 3E-35 6.5E-40 350.2 19.2 234 1337-1585 24-271 (334)
6 cd06431 GT8_LARGE_C LARGE cata 100.0 3E-33 6.5E-38 325.0 19.1 253 1339-1601 1-269 (280)
7 cd06430 GT8_like_2 GT8_like_2 100.0 9E-33 2E-37 319.1 22.6 264 1339-1612 1-291 (304)
8 cd04194 GT8_A4GalT_like A4GalT 100.0 5.6E-33 1.2E-37 319.2 19.2 232 1339-1584 1-246 (248)
9 COG1442 RfaJ Lipopolysaccharid 100.0 2.7E-31 5.8E-36 310.4 21.0 238 1338-1591 2-251 (325)
10 cd06429 GT8_like_1 GT8_like_1 100.0 1.4E-31 3.1E-36 306.9 17.2 227 1339-1599 1-255 (257)
11 PLN02718 Probable galacturonos 100.0 4.4E-30 9.6E-35 312.4 15.1 261 1335-1607 310-596 (603)
12 PLN02523 galacturonosyltransfe 100.0 5.7E-29 1.2E-33 299.2 16.7 253 1338-1602 248-547 (559)
13 PLN02742 Probable galacturonos 99.9 2.8E-26 6E-31 276.3 16.7 261 1337-1608 225-529 (534)
14 PLN02829 Probable galacturonos 99.9 1.8E-26 3.8E-31 279.9 14.7 260 1339-1608 331-633 (639)
15 PF01501 Glyco_transf_8: Glyco 99.9 1.7E-26 3.6E-31 263.5 12.1 231 1340-1585 1-247 (250)
16 PLN02870 Probable galacturonos 99.9 3.1E-26 6.7E-31 275.2 13.6 184 1419-1608 329-526 (533)
17 PLN02659 Probable galacturonos 99.9 3.8E-26 8.1E-31 274.5 13.7 182 1419-1608 330-527 (534)
18 PLN02769 Probable galacturonos 99.9 5.4E-26 1.2E-30 278.0 14.6 252 1338-1602 329-618 (629)
19 PLN02867 Probable galacturonos 99.9 9.2E-26 2E-30 272.5 14.7 177 1419-1603 331-524 (535)
20 PLN02910 polygalacturonate 4-a 99.9 8.3E-25 1.8E-29 264.8 15.2 252 1339-1601 345-644 (657)
21 cd02537 GT8_Glycogenin Glycoge 99.8 4E-20 8.7E-25 211.9 16.8 203 1341-1586 3-214 (240)
22 PLN00176 galactinol synthase 99.8 5.3E-20 1.1E-24 216.6 17.1 243 1345-1609 30-301 (333)
23 cd06914 GT8_GNT1 GNT1 is a fun 99.6 1.7E-15 3.6E-20 175.1 16.1 207 1343-1589 5-243 (278)
24 cd02515 Glyco_transf_6 Glycosy 97.0 0.02 4.4E-07 66.1 16.2 224 1335-1575 32-263 (271)
25 KOG1879 UDP-glucose:glycoprote 96.9 0.54 1.2E-05 63.5 29.6 377 680-1092 339-746 (1470)
26 COG5597 Alpha-N-acetylglucosam 96.5 0.0014 3E-08 75.4 2.6 135 1419-1565 155-323 (368)
27 PF03414 Glyco_transf_6: Glyco 96.2 0.086 1.9E-06 62.8 15.3 224 1335-1575 97-328 (337)
28 PF11051 Mannosyl_trans3: Mann 94.3 0.085 1.9E-06 62.3 7.1 110 1341-1458 4-115 (271)
29 cd03019 DsbA_DsbA DsbA family, 93.0 4.5 9.7E-05 44.0 17.3 144 531-712 14-158 (178)
30 PF03407 Nucleotid_trans: Nucl 90.7 0.64 1.4E-05 52.6 7.6 110 1421-1554 54-170 (212)
31 cd03023 DsbA_Com1_like DsbA fa 88.9 11 0.00023 39.7 14.9 136 534-711 7-143 (154)
32 PF13462 Thioredoxin_4: Thiore 86.7 20 0.00042 38.3 15.3 134 534-711 14-150 (162)
33 PF13620 CarboxypepD_reg: Carb 83.5 3.9 8.4E-05 38.8 7.2 52 1182-1234 2-54 (82)
34 cd00761 Glyco_tranf_GTA_type G 79.1 26 0.00056 35.5 12.1 88 1351-1452 9-96 (156)
35 PF01323 DSBA: DSBA-like thior 76.6 79 0.0017 34.8 15.8 156 535-706 1-176 (193)
36 PF13462 Thioredoxin_4: Thiore 74.1 7.4 0.00016 41.5 6.7 50 218-268 4-57 (162)
37 cd03019 DsbA_DsbA DsbA family, 73.7 1.4E+02 0.003 32.3 16.7 144 797-960 14-157 (178)
38 PF07210 DUF1416: Protein of u 69.7 25 0.00054 34.2 8.0 54 1179-1234 7-60 (85)
39 PF00535 Glycos_transf_2: Glyc 68.4 28 0.00061 36.2 9.4 92 1351-1456 10-102 (169)
40 PF13715 DUF4480: Domain of un 68.4 42 0.00091 32.3 9.8 47 1182-1234 2-50 (88)
41 PF08400 phage_tail_N: Prophag 58.8 31 0.00068 36.6 7.2 59 1179-1237 2-65 (134)
42 cd03025 DsbA_FrnE_like DsbA fa 57.0 1.7E+02 0.0037 32.2 13.4 156 534-704 1-176 (193)
43 cd06423 CESA_like CESA_like is 54.6 1.1E+02 0.0024 31.7 10.9 91 1349-1453 7-99 (180)
44 KOG1948 Metalloproteinase-rela 53.0 70 0.0015 42.9 10.2 98 1136-1238 78-176 (1165)
45 cd04196 GT_2_like_d Subfamily 51.8 1.2E+02 0.0026 33.4 11.1 95 1349-1456 8-103 (214)
46 cd03023 DsbA_Com1_like DsbA fa 51.6 28 0.00061 36.5 5.8 43 226-268 4-47 (154)
47 PRK10954 periplasmic protein d 49.0 2.8E+02 0.0061 31.5 13.6 46 664-710 135-180 (207)
48 PRK11204 N-glycosyltransferase 45.3 1.4E+02 0.003 37.5 11.4 101 1338-1455 55-157 (420)
49 cd03022 DsbA_HCCA_Iso DsbA fam 45.1 1.4E+02 0.003 32.9 10.2 97 602-711 85-181 (192)
50 cd04186 GT_2_like_c Subfamily 45.1 1.6E+02 0.0034 30.7 10.3 88 1351-1455 9-97 (166)
51 PF13743 Thioredoxin_5: Thiore 39.6 3.4E+02 0.0074 30.1 12.1 149 538-704 2-155 (176)
52 cd06439 CESA_like_1 CESA_like_ 39.6 3E+02 0.0066 31.3 12.3 100 1338-1456 30-133 (251)
53 cd02520 Glucosylceramide_synth 36.7 2.4E+02 0.0052 31.1 10.5 96 1349-1455 11-109 (196)
54 PF03452 Anp1: Anp1; InterPro 32.5 4.3E+02 0.0094 31.6 11.9 133 1335-1470 23-177 (269)
55 cd04185 GT_2_like_b Subfamily 32.1 2.2E+02 0.0048 31.3 9.3 94 1349-1455 7-102 (202)
56 cd06435 CESA_NdvC_like NdvC_li 31.7 3.3E+02 0.0072 30.7 10.9 104 1351-1466 11-117 (236)
57 PF10111 Glyco_tranf_2_2: Glyc 29.8 4.1E+02 0.0088 31.6 11.5 152 1352-1515 17-187 (281)
58 cd06421 CESA_CelA_like CESA_Ce 29.6 3.8E+02 0.0083 29.9 10.9 97 1339-1451 3-102 (234)
59 PF13641 Glyco_tranf_2_3: Glyc 28.5 73 0.0016 35.8 4.7 96 1349-1454 11-108 (228)
60 PRK15036 hydroxyisourate hydro 27.7 1.1E+02 0.0024 32.8 5.5 54 1181-1234 28-89 (137)
61 PRK14583 hmsR N-glycosyltransf 27.0 3.3E+02 0.007 34.7 10.6 101 1337-1454 75-177 (444)
62 cd04192 GT_2_like_e Subfamily 26.9 3.1E+02 0.0067 30.4 9.4 96 1349-1455 7-105 (229)
63 cd04187 DPM1_like_bac Bacteria 26.0 4.4E+02 0.0096 28.3 10.2 147 1351-1512 9-163 (181)
64 PRK10877 protein disulfide iso 25.9 3.9E+02 0.0085 31.1 10.1 38 534-571 109-146 (232)
65 cd06420 GT2_Chondriotin_Pol_N 25.7 4.5E+02 0.0098 28.0 10.2 95 1350-1456 8-103 (182)
66 cd04195 GT2_AmsE_like GT2_AmsE 25.6 5.3E+02 0.011 28.1 10.8 83 1352-1449 13-96 (201)
67 cd06436 GlcNAc-1-P_transferase 25.6 5.8E+02 0.013 28.0 11.2 97 1348-1450 6-106 (191)
68 cd04190 Chitin_synth_C C-termi 23.8 1.7E+02 0.0037 33.8 6.7 79 1348-1455 6-96 (244)
69 KOG1928 Alpha-1,4-N-acetylgluc 23.2 39 0.00085 41.5 1.3 18 1438-1455 242-259 (409)
70 cd02514 GT13_GLCNAC-TI GT13_GL 23.1 3.5E+02 0.0075 33.4 9.3 108 1339-1454 2-118 (334)
71 PRK06437 hypothetical protein; 23.0 69 0.0015 29.9 2.6 22 937-958 26-47 (67)
72 cd02972 DsbA_family DsbA famil 22.7 1E+02 0.0022 29.1 3.9 38 231-268 1-40 (98)
73 PRK05454 glucosyltransferase M 22.5 5.7E+02 0.012 34.8 11.9 121 1337-1467 124-255 (691)
74 TIGR03472 HpnI hopanoid biosyn 22.3 5.3E+02 0.011 32.0 11.0 103 1338-1452 42-145 (373)
75 cd06434 GT2_HAS Hyaluronan syn 22.0 7.1E+02 0.015 27.8 11.2 106 1339-1466 2-110 (235)
76 PF12633 Adenyl_cycl_N: Adenyl 21.7 1.2E+02 0.0025 34.8 4.5 53 1357-1410 105-165 (204)
77 cd03866 M14_CPM Peptidase M14 21.5 1.7E+02 0.0037 36.6 6.4 53 1179-1234 294-346 (376)
78 PRK14716 bacteriophage N4 adso 21.0 1E+03 0.022 31.1 13.4 117 1337-1460 66-185 (504)
79 TIGR03469 HonB hopene-associat 21.0 6.7E+02 0.015 31.2 11.6 110 1338-1455 41-156 (384)
80 cd06427 CESA_like_2 CESA_like_ 20.7 5.8E+02 0.013 29.1 10.3 94 1348-1455 10-107 (241)
81 PF04765 DUF616: Protein of un 20.1 1.1E+02 0.0023 37.2 4.0 98 1365-1468 88-189 (305)
82 cd02982 PDI_b'_family Protein 20.1 1.8E+02 0.0038 28.5 5.0 38 227-264 12-51 (103)
No 1
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.8e-303 Score=2754.59 Aligned_cols=1424 Identities=45% Similarity=0.736 Sum_probs=1275.9
Q ss_pred cccCCCceEEEEEecCCCCchhHHHHHHHhhhcchhhHHHHHHHcccCCCCCCCccHHHHHHHHHHHHhhcCChhhhhhH
Q 000334 29 QIQKPKNVQVAVRAKWSGTPLLLEAGELLASERKDLFWEFIEKWLHSEENDADSRTAKDCLKRIVRHGSSLLSESLASLF 108 (1646)
Q Consensus 29 ~~~~~~~V~V~L~A~W~~tPlllE~~E~~A~e~~~~fw~~ld~i~~~~~~~~~~~tdk~~Y~~~l~~~~~~Ls~~~~~ll 108 (1646)
..+.+|+|+|.+.|+|++||+++|++|++|+|++.+||.|++.+.+...+..+..||+.+|+.++++|..+|+++++++|
T Consensus 17 ~~a~s~~v~~~l~akw~~t~ll~e~sE~l~~e~~elFw~f~~~v~~l~~~~~e~~s~~~~y~~~~~~a~~~ls~~~~~lL 96 (1470)
T KOG1879|consen 17 ARAASKNVTVRLAAKWSSTPLLLEASELLAEESNELFWNFVNAVTGLDDDSNETDSDENKYNLISKVAGQVLSPEEVSLL 96 (1470)
T ss_pred hhhcCCceeEEEecCCCCccHHHHHHHHHHhhhhHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhcChHHHHHH
Confidence 44677899999999999999999999999999999999999999998755556789999999999999999999999999
Q ss_pred hHhhhcccchhHHHHHHHHHHhhcCCCCCCCCCccccccCCCcchhhhhhcccccccccCCCCCCCCCcceEEEeCCeEe
Q 000334 109 EFSLTLRSASPRLVLYRQLAEESLSSFPPFDDSNLKNEVGGASEANEKLETKKSDSLLVGVNPKSPGGKCCWVDTGGALF 188 (1646)
Q Consensus 109 k~~Lslr~~SPrIEa~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wv~~~g~~~ 188 (1646)
+|+||+|+||||||||+|++.+. +|++|.+|+++||+.+
T Consensus 97 ~f~lalrs~spriQ~~~qia~e~-----------------------------------------~~~~c~sf~v~~~~~~ 135 (1470)
T KOG1879|consen 97 KFSLALRSYSPRIQAFQQIAAEE-----------------------------------------PPEGCDSFFVLGGELT 135 (1470)
T ss_pred HHHHHhccccHHHHHHHHHHhhc-----------------------------------------CCCCCceEEEECCeee
Confidence 99999999999999999999887 1257889999999999
Q ss_pred cChHHHHHhhcCCCCcCCCCCCCCCcCCcceeccCCCCCCceEEEEeecCchhHHHHHHHHHHHHHcCCeeEEEeecCCC
Q 000334 189 LEVSELLMWLRSPSELTGESFQQPELFDFDHIHAESSISSRTAILYGALGSDCFKEFHINLVQAAKEGKVMYVVRPVLPS 268 (1646)
Q Consensus 189 C~~~~l~~l~~~~~~~~~~~~~~~~~~~fDhv~~~~~~~~p~vILYg~i~s~~F~~fh~~L~~~A~~Gki~YV~R~~~~~ 268 (1646)
|+++||++++.++. .....+.++.||||+|+++++.|+|||||++|+.+|..||+.|.++|++||++||+||+.+.
T Consensus 136 c~~~dL~k~l~~~~----~~~s~~~~~~~dhv~p~s~~~~p~~ilYge~gt~~f~~Fh~~l~k~a~~gk~~yv~Rh~~~~ 211 (1470)
T KOG1879|consen 136 CKFDDLQKLLKKAL----TNQSDPKLFSFDHVVPGSNTESPVAILYGELGTIDFRNFHKLLEKLAKNGKINYVFRHFLRK 211 (1470)
T ss_pred ecHHHHHHHhhhhh----hcccCcccccccceeccCCCCCcEEEEEcccchHhHHHHHHHHHHHHhcCCeeEEEEecccC
Confidence 99999999987654 12225799999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCcccCCCCCCCccccceeeEEEEeeccccccccccccccccCCCCCCcccccccccchhhhhhccCCcchhhHH
Q 000334 269 GCEANVGNCGAVGAKDSLNLGGYGVELALKNMEYKAIDDSMIKEGVTLEDPRTEDLSQEVRGFVFSKLLERKPDLTSEIM 348 (1646)
Q Consensus 269 ~~~~~~~~~~~~~~~~~l~LsGYGVELalK~tEYkaiDD~~v~~~~~~~~~~~~~~~~ev~Gf~f~~L~~~~p~l~~~L~ 348 (1646)
. .++|++|+||||||+||+|||||+||+.++... .+++. .+|+||+|++|+++||+++.+++
T Consensus 212 ~------------~~~p~~LsGyGVElaLK~teYka~Ddss~~~~~-----~~e~~-~dv~gf~f~~lk~~~~~l~~~l~ 273 (1470)
T KOG1879|consen 212 K------------DSRPVYLSGYGVELALKNTEYKAVDDSSVKKLN-----VEEDL-NDVQGFNFGKLKDRHPDLRGALE 273 (1470)
T ss_pred C------------CCCceeeecceeEEeecCcceeecccccccccc-----cccch-hhhhhhhhhhccccChHHHhHHH
Confidence 3 578999999999999999999999999887321 22232 67999999999999999999999
Q ss_pred HHHHhhhccccCCCCChhhhhcccHHHHHHHhcCCChHHHHHHHHhccchhhhhhhcccCChhHHHHHHHhhhc-----C
Q 000334 349 SFRDYLLSSTTSETLEVWELKDLGHQTAQRIVHASDPLQSMQEISQNFPSVVSSLSRMKLNDSIKDEIVANQRY-----M 423 (1646)
Q Consensus 349 ~fr~~L~~~~e~~pLk~wEl~dLglqAaq~I~~s~dpL~~L~~isQNFP~~A~sLs~~~v~~~~~~ei~~Nq~~-----~ 423 (1646)
.||.||++++|+.|||+||+||||+||||+|+++.++|+.|++|+||||++|++|++++|++++++|+++||+. +
T Consensus 274 ~~r~~lles~el~~Lk~welqdL~~qaaq~i~~~td~L~~mk~i~qNFP~~Ar~Ls~~~Vn~~lr~ei~~nq~~~~~~~v 353 (1470)
T KOG1879|consen 274 SFRLHLLESDELAPLKVWELQDLGFQAAQKIKSITDALQFMKEISQNFPTHARSLSKQSVNEDLRTEIEENQSKLEAKGV 353 (1470)
T ss_pred HHHHhccCccccccccHHHHhhhhHHHHHHHhhhHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHHhhhhhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999984 7
Q ss_pred CCCceEEEEcCcccCCCCCChhHHHHHHHHHHHHHhHhhhcCCChHHHHHhhccCCCC-CCCceEEEecCCCeeEecccc
Q 000334 424 PPGKSLMALNGALINIEDIDLYLLIDLVHQELSLADQFSKLKIPRTITQKLLSTVPPA-ESSMFRVDFRSTHVQYLNNLE 502 (1646)
Q Consensus 424 ~~G~~~L~ING~~i~~~~ld~FsLL~~Lr~E~k~~~~L~~lGl~~~~a~~LL~~~~~~-~~~~~r~D~r~~~IiwlNDIE 502 (1646)
+||.++|||||+.++.+++|+|+|+++|++|.+++++|++||+.+..+.++|+..... +.+++++|+|+.+|+|+||||
T Consensus 354 ~~g~~~L~INGl~~di~~~DlfsLld~lk~E~~~~~~f~~lgi~~~~l~~~l~l~~~~~~~~~~~~Dir~~~v~~vNdlE 433 (1470)
T KOG1879|consen 354 PPGDNALFINGLNLDIDSLDLFSLLDLLKQEKKMLNGFHNLGIDGEFLSKLLKLDLSKSEKQEYAVDIRSEAVIWVNDLE 433 (1470)
T ss_pred CCCcceeEecccccCcccccHHHHHHHHHHHHHHHHHHHhcCCchhHHHHhhccccCcccccceeeecccccceeecccc
Confidence 9999999999999999999999999999999999999999999999999999854432 367899999999999999999
Q ss_pred CchhhhhchhhHHHhhccCCCCCcccccccccceEEEEcCCCcchHHHHHHHHHHHhcccceEEEEEeeecccccchhcc
Q 000334 503 EDAMYKRWRSNINEILMPVFPGQLRYIRKNLFHAVYVLDPATVCGLEVIDMIMSLYENHFPLRFGVILYSSKFIKSIEIN 582 (1646)
Q Consensus 503 kD~~Y~~w~~sl~~ll~p~~PGqlp~iRrNl~nlVfvIDps~~~~~~~~~~l~~~v~~~~PiR~GlVp~~~~~~~~~~~~ 582 (1646)
+|++|.+||+|++.||+|+||||||+|||||||+||||||+++++++++..+.+|+.|++|+|||+||+.++ .++
T Consensus 434 sD~~Y~~w~~Svq~lL~P~~PG~lr~IrkNl~nlV~vIDpa~~~~~~~l~~~~~f~s~~~P~R~G~v~~~nd----~~~- 508 (1470)
T KOG1879|consen 434 SDPQYDRWPSSVQLLLKPTFPGQLRPIRKNLFNLVFVIDPATPEDLEFLKTARNFVSHQIPVRIGFVFIAND----DDE- 508 (1470)
T ss_pred cchhhcchhHHHHHHhCCCCCCcchHHHhhheeEEEEecCCCccchHHHHHHHHHhcCCCceEEEEEEEecC----Ccc-
Confidence 999999999999999999999999999999999999999999999999999999999999999999999886 122
Q ss_pred CCCCCCCcccCCCCCCcchhHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcccCCCCCCchhhhhhHHHHHHhhhcCCCC
Q 000334 583 GGELHSPVAEDDSPVNEDISSLIIRLFLFIKESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAK 662 (1646)
Q Consensus 583 ~g~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~g~~~a~~FL~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~ 662 (1646)
+| ..|.++++.|+|+|+++..|...|+.||.+++...+. ...+..+++...|.++ ++
T Consensus 509 d~-------------~~d~g~av~~af~yi~~~~d~~~Alk~l~~~~~~~~~------~~~~~~e~v~~~~~~~-~~--- 565 (1470)
T KOG1879|consen 509 DG-------------VTDLGVAVLRAFNYISEESDNLTALKFLTNIYSDVRS------DEYVLVEHVKGVFENT-LP--- 565 (1470)
T ss_pred cc-------------hhhHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhcc------cchhHHHhhhHHHHhh-cc---
Confidence 22 2478999999999999999999999999999876543 2334578888888442 22
Q ss_pred CCChhhhhhhhccchhhHHHHHHHHHHHHhCCCCCCccEEEcceeccCch------HHHHHHHHHHHHHHHHHHHccccC
Q 000334 663 TPPQDMLLKLEKEKTFMDQSQESSMFVFKLGLTKLKCCLLMNGLVSESSE------EALLNAMNDELQRIQEQVYYGNIN 736 (1646)
Q Consensus 663 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~rlgi~~~~p~vlvNG~~~~~~~------~~l~~~i~~~~~~lq~~v~~g~l~ 736 (1646)
.....+.++.++.|+..++++..|+.++||+. .|+|++||+|++..+ ..+++.|++++.++|++||.|.++
T Consensus 566 --~~~~~~il~~~s~~d~~~~~~~~fv~~lGl~~-~p~vL~NG~i~~~~~~~~~~e~~i~~~i~~~t~~iQ~av~~G~l~ 642 (1470)
T KOG1879|consen 566 --NAKKDDILGIDSTYDEGRKAGFSFVQELGLDS-LPSVLLNGEIFDHESNAWDLEESILQEIMKDTPFIQRAVYEGKLE 642 (1470)
T ss_pred --ccchhhhhccccchhhcchHHHHHHHHhCCCc-cCeeeECCeeccccccccchHHHHHHHHHhhhHHHHHHHHcCCCc
Confidence 22344677889999999999999999999955 899999999999776 388999999999999999999999
Q ss_pred ChhhHHHHHHhc-ccCCccCceeccCCCCCCeEeecccccccchhHhhcCccccCCCCCCCCcceEEEEEeeCCCHHHHH
Q 000334 737 SYTDVLEKVLSE-SGINRYNPQIITDAKVKPKFISLASSFLGRETELKDINYLHSPETVDDVKPVTHLLAVDVTSKKGMK 815 (1646)
Q Consensus 737 d~~~~~~~~l~~-~~~~r~n~~i~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~lv~Df~s~~g~~ 815 (1646)
|+.++++++|.+ ++++|.|++|++..+.-.++..+...+.+.+.+++++.|++.+ +.....++|+|||+||++++||+
T Consensus 643 d~~~~~d~ll~~~~v~~R~N~~i~~~~~~~~~v~s~l~~~~k~~~~~~~~~Yl~~~-~~~~~~~vT~wlvaDf~~~~grk 721 (1470)
T KOG1879|consen 643 DDQNVVDFLLEQKSVLPRINKRILSGSKFLDSVVSILSSTDKSAVLLKNVNYLTKK-TEESNLPVTIWLVADFESPSGRK 721 (1470)
T ss_pred cchHHHHHHHhCccccccccccccccccchhhHHhhhcchhhhhHHHhhccccccC-chhhccceEEEEEcccCChhHHH
Confidence 999999999999 9999999999984333334444444456778899999999765 45567789999999999999999
Q ss_pred HHHHHHHHHhcCCCceEEEEEEcCCCCCCCchhHHHHHHHHhhhccchhhHHHHHHHHHhhhhhhhhhhcccccccchHH
Q 000334 816 LLHEGIRFLIGGSNGARLGVLFSASREADLPSIIFVKAFEITASTYSHKKKVLEFLDQLCSFYERTYLLASSATADSTQA 895 (1646)
Q Consensus 816 ~l~~al~~~~~~~~~~Rv~~i~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 895 (1646)
+|.+||+++ +++.++||++|.||++........+++.|++++.++.. ++.++.....+.. +..
T Consensus 722 lL~~al~~~-~~s~~~Ri~~I~np~s~~~~~~~s~~~~i~aal~~~~~---------~l~~e~~~~~~~~----~~~--- 784 (1470)
T KOG1879|consen 722 LLTNALDYL-KSSKNARIGLIPNPSSESAEGSNSIKRPILAALLFLPA---------KLAKEEVASHLYK----GKN--- 784 (1470)
T ss_pred HHHHHHHHH-hccccceEEEecCchhhhhcccccccchHHHHHhcCcH---------hhhHHHHHHHhhc----Ccc---
Confidence 999999998 56899999999999874444556778888888766551 2222111111100 000
Q ss_pred HHHHHHHHHhhcCCChHHHhhhcCccchhhhHHHHHHHHHHHHHHhCCCCCCcEEEEcCEEe-cCCCCCCCCHhhHHHHH
Q 000334 896 FIDKVCEFAEANGLSSKVYRASLPEYSKGKVRKQLNKVVQFLHRQLGVESGANAVITNGRVT-FPIDESTFLSHDLSLLE 974 (1646)
Q Consensus 896 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vv~NGR~i-~~~~~~~f~~~Df~~L~ 974 (1646)
...++ ...+++|+.++... ....++.+|++.+|+.+|+++|+.|||+| |+..++.|..+||.+|+
T Consensus 785 ---------~~~~i-~s~~e~~~~~~~~~----l~~~~~~~~~~vl~l~~~q~~Vv~Ngr~igpl~~~E~f~t~Df~lLe 850 (1470)
T KOG1879|consen 785 ---------SDLSI-GSKFEKDLEKLLLF----LKKLHSFIVKEVLGLNSGQRAVVSNGRFIGPLSSSESFNTADFKLLE 850 (1470)
T ss_pred ---------cccch-hHHHHHhhhhhhhh----HHhhhhHHHHhhhccCCCcceeeecCeEEEeccchhhhchhhHHHHH
Confidence 00111 14567776655433 22356788999999999999999999999 77667999999999999
Q ss_pred HHHHHhhhHHHHHHHHHhcccCCCCCCCcccccchhhhhhhhhhhcccccccCCcccccccccccceeeEEeCC--CCce
Q 000334 975 SVEFKHRIKHIWEIIEEVNWQETYPDIDPDMLTSKFVSDIILFVTSSMAMRDRSSESARFEILSAEYSAVVFNS--ENST 1052 (1646)
Q Consensus 975 ~~e~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~--~~~~ 1052 (1646)
.++..++.++|.++++.... .+.....++..|++.+....+.++..+.++..++.+|+++.+++ ..+.
T Consensus 851 ~~~~~~~~~ki~~~~~~~~~----------~v~~~~~sd~~~~v~~~~~t~~~s~~r~~~~~~~~~~s~v~~~~~~~~a~ 920 (1470)
T KOG1879|consen 851 SMLFSNYSQKISNIIEESEL----------DVSEDVFSDFLMKVAALMSTQDKSRPRMDFSFLKDEHSVVKFPPDENNAT 920 (1470)
T ss_pred HHhccccchhHHHHHHHhhh----------cchhhhhhhhhhhhhcccccCCccccccchhhhcCCCceeecCCCCCCce
Confidence 99999999999988887531 22245677888999887777777777888888999999999866 4568
Q ss_pred EEEEEEecCCCcchhhHHHHHHHHhccCCCeEEEEEccCCCCCccCccceeecccCCCcCCCCCCccccCCceeeccCCC
Q 000334 1053 IHIDAVIDPLSPTGQKLSSLLRVLQRYAQPSMRIVLNPMSSLVDIPLKNYYRYVVPTMDDFSNTDYSISGPKAFFANMPL 1132 (1646)
Q Consensus 1053 ~~v~ailDPlse~aQk~~~ll~~l~~~~~v~i~i~LnP~~~l~elPlkrfYR~v~~~~~~F~~~g~~~~~p~a~F~~lP~ 1132 (1646)
|+|+|||||||++||||+|||.+|+++.||+|||+|||+.+++|||||||||||+++++.|+++|....+ .|+|.+||.
T Consensus 921 idv~aVlDPlsreaQkl~sll~~l~kl~n~~i~i~lnP~~~lse~PlkrfYRyV~~~e~~f~~~g~~~~~-~a~F~nlP~ 999 (1470)
T KOG1879|consen 921 IDVLAVLDPLSREAQKLASLLEVLRKLTNVNIRIILNPKSKLSEMPLKRFYRYVLEAELSFSANGSDSDG-VAKFDNLPA 999 (1470)
T ss_pred EEEEEEecCCCHHHHHHHHHHHHHHHhcCcceEEEEcCchhhhhccHHHHHHhhcCcccccccCCccccc-eeeecCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998877 899999999
Q ss_pred CCceEEeccCCCCeEEeeecccccCCcccccccCCCcceEEEEEeeeEEEEEEeccCCC-CCCCCeEEEEecCCCCcccc
Q 000334 1133 SKTLTMNLDVPEPWLVEPVIAVHDLDNILLEKLGDTRTLQAVFELEALVLTGHCSEKDH-EPPQGLQLILGTKSTPHLVD 1211 (1646)
Q Consensus 1133 ~~lltl~md~P~~WlV~~~~a~~DLDNI~L~~~~~~~~v~a~yeLe~iliEGha~d~~~-~pprGlqL~L~t~~~~~~~D 1211 (1646)
++||||+||||++|+|+++.++||||||+|++.+ ++|+|+|||||||+||||+|..+ +|||||||+|||.++|+++|
T Consensus 1000 ~~lltm~l~~pesWlVe~v~a~~DLdNI~Le~~~--~~v~A~yele~lLleG~c~d~~~g~pprGlql~Lgt~~~p~i~D 1077 (1470)
T KOG1879|consen 1000 SPLLTMNLDVPESWLVEAVRAIYDLDNIKLEDTS--SDVTAEYELEYLLLEGHCFDKVSGQPPRGLQLTLGTSANPHIVD 1077 (1470)
T ss_pred CceeEEeecCCCceEeeeccccccchheeeeccC--CchheeeehhhhhccceehhhccCCCCCceEEEeccCCCCeeee
Confidence 9999999999999999999999999999999985 58999999999999999999887 99999999999999999999
Q ss_pred eEEEecceeeeeeeCCceeEEEecCCCCCcceEEeecCCCCcCCCCccEEEEecCCCceEEEEEEecCCccccccccCCc
Q 000334 1212 TLVMANLGYWQMKVSPGVWYLQLAPGRSSELYVLKEDGNVNEDRSLSKRITINDLRGKVVHMEVVKKKGKENEKLLVSSD 1291 (1646)
Q Consensus 1212 TiVManlGYfQlka~PG~w~l~l~~GrS~diy~i~s~~~~~~~~~~~~~v~v~sf~g~~l~~rv~kk~g~e~~~vl~~~~ 1291 (1646)
|||||||||||||||||+|.|+||+|||+++|.|.++. |+.+..+..+|+|+||+|++|.|+|+|+||||++++|.+.
T Consensus 1078 TiVManlGYfQlKanPG~W~L~lr~G~S~d~y~i~s~d-g~~~~~~~~qvvidSf~gk~v~vkV~k~~g~e~edll~~~- 1155 (1470)
T KOG1879|consen 1078 TIVMANLGYFQLKANPGAWILRLRDGRSSDIYQIVSHD-GTPDQSSDIQVVIDSFRGKVVKVKVSKKPGMEEEDLLSDE- 1155 (1470)
T ss_pred eEEEeccceeEEecCCcceEEEecCCCchhheeeeccc-CCCCcCCCceEEEecCCceEEEEEEeecCCcchhhhhcch-
Confidence 99999999999999999999999999999999999855 5555567899999999999999999999999999999872
Q ss_pred ccccccccCCccccccccccccccCCcccchhhhhcccCcccccCceeEEEEeecCcchHHHHHHHHHHHHhcCCCCeEE
Q 000334 1292 EDSHSQAEGHWNSNFLKWASGFIGGSEQSKKEKAAVDHGKVERHGKTINIFSIASGHLYERFLKIMILSVLKNTCRPVKF 1371 (1646)
Q Consensus 1292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~InIf~vas~~~ye~~l~v~I~SIl~nt~~~v~F 1371 (1646)
++.|.|+|+. +|.|+..+. ++++.++||||+||+||+|||++.+||.||++||+++|||
T Consensus 1156 -----~~~g~wns~k-----~f~~~~~~~-----------~~~~~~vINIFSvASGHLYERflrIMm~SvlknTktpVKF 1214 (1470)
T KOG1879|consen 1156 -----KEEGFWNSIK-----SFTGGLAKS-----------MKKDKEVINIFSVASGHLYERFLRIMMLSVLKNTKTPVKF 1214 (1470)
T ss_pred -----hhhhhhhhhh-----hhccccccc-----------ccCccceEEEEeeccccHHHHHHHHHHHHHHhCCCCceeE
Confidence 1358899943 433332211 1234458999999999999999999999999999999999
Q ss_pred EEEECCCChhHHHHHHHHHhhcCcEEEEEEecCCcccccccccccHHHHHHHHhhcccCCCCCCeEEEEeCceeeccCch
Q 000334 1372 WFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMG 1451 (1646)
Q Consensus 1372 ~il~~~lS~~~k~~L~~l~~~~~~~i~~v~~~wp~~L~~~~~~~r~~~~y~RLfL~~LfP~~vdkVIYLDaD~Iv~~Dl~ 1451 (1646)
|+|.++|||.|++.|++|+++|||+|++++|+||+|||+|+++||++|+|++||||+|||.+|+||||+|||+|||+||.
T Consensus 1215 WfLkNyLSPtFKe~iP~mA~eYnFeyElv~YkWPrWLhqQ~EKQRiiWgyKILFLDVLFPL~v~KvIfVDADQIVR~DL~ 1294 (1470)
T KOG1879|consen 1215 WFLKNYLSPTFKESIPHMAKEYNFEYELVQYKWPRWLHQQTEKQRIIWGYKILFLDVLFPLNVDKVIFVDADQIVRADLK 1294 (1470)
T ss_pred EeehhhcChHHHHHHHHHHHHhCceEEEEEecCchhhhhhhhhhhhhhhhhhhhhhhccccccceEEEEcchHhhhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCeeEEeeecCCCCccCCcccccccccccccCCCCeeecceeeeeHHHHHhhcHHHHHHHHHHHhccCCCCC
Q 000334 1452 ELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLRGRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSL 1531 (1646)
Q Consensus 1452 eL~~lDl~g~~~aav~d~~s~~~~~g~~fw~~gyw~~~l~~~~YfNSGvlliNL~~~R~~~~~dkl~~~~q~Ls~~~~sl 1531 (1646)
||+++|++|+|||++|+|++|++|+|+|||++|||++||.|++||+|++|||||+|||+..+||++|.+||.||.||+||
T Consensus 1295 EL~dfdl~GaPygYtPfCdsR~EMDGyRFWK~GYW~~hL~grkYHISALYVVDLkrFReiaAGDrLR~qYQ~LS~DPNSL 1374 (1470)
T KOG1879|consen 1295 ELMDFDLGGAPYGYTPFCDSRREMDGYRFWKQGYWKKHLRGRKYHISALYVVDLKRFREIAAGDRLRGQYQALSQDPNSL 1374 (1470)
T ss_pred HHHhcccCCCccccCccccccccccchhHHhhhHHHHHhccCccccceeeeeeHHHHHhcccchHHHHHHHhhcCCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcChHhHhhccCcccccCCcccccCCccCccccCCCeEEEccCCCCCCChhhHHhhhcccCCchhhHHHHHHHHHhc
Q 000334 1532 ANLDQDLPNYAQHTVPIFSLPQEWLWCESWCGNATKSKAKTIDLCNNPMTKEPKLQGARRIVSEWPDLDSEARQFTAKIL 1611 (1646)
Q Consensus 1532 ~~~DQDllN~v~~~~~I~~Lp~~wN~~~~~~~~~~~~~akiI~~~~np~tk~~kl~~a~r~~~~w~~~d~~~~~~~~~~~ 1611 (1646)
.|+||||+|+|+|++||++||++|.||+|||+++++++|||||+||||+||||||++|+|+++||.+||.||++++.++.
T Consensus 1375 sNLDQDLPNnm~hqVpIkSLPqeWLWCETWC~d~skkkAktIDLCnNP~TKEpKL~~A~Riv~EW~dyD~Ei~~v~s~~~ 1454 (1470)
T KOG1879|consen 1375 SNLDQDLPNNMQHQVPIKSLPQEWLWCETWCDDESKKKAKTIDLCNNPLTKEPKLDAARRIVSEWTDYDAEIRSVLSKAQ 1454 (1470)
T ss_pred hhccccccccceeecccccCCcchhhhhhhcCchhhhhchhhhhhcCccccchhhHHHhhhcCCCcccchHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ccc
Q 000334 1612 GEE 1614 (1646)
Q Consensus 1612 ~~~ 1614 (1646)
.+.
T Consensus 1455 ~~~ 1457 (1470)
T KOG1879|consen 1455 DED 1457 (1470)
T ss_pred ccC
Confidence 666
No 2
>PF06427 UDP-g_GGTase: UDP-glucose:Glycoprotein Glucosyltransferase; InterPro: IPR009448 The N-terminal region of this group of proteins is required for correct folding of the ER UDP-Glc: glucosyltransferase. These proteins selectively reglucosylates unfolded glycoproteins, thus providing quality control for protein transport out of the ER. Unfolded, denatured glycoproteins are substantially better substrates for glucosylation by this enzyme than are the corresponding native proteins. This protein and transient glucosylation may be involved in monitoring and/or assisting the folding and assembly of newly made glycoproteins, in order to identify glycoproteins that need assistance in folding from chaperones; GO: 0003980 UDP-glucose:glycoprotein glucosyltransferase activity, 0006486 protein glycosylation
Probab=100.00 E-value=1.9e-53 Score=470.09 Aligned_cols=205 Identities=46% Similarity=0.743 Sum_probs=186.3
Q ss_pred hhhhhhhhcccccccCCc--ccccccccccceeeEEeC---CCCceEEEEEEecCCCcchhhHHHHHHHHhccCCCeEEE
Q 000334 1012 SDIILFVTSSMAMRDRSS--ESARFEILSAEYSAVVFN---SENSTIHIDAVIDPLSPTGQKLSSLLRVLQRYAQPSMRI 1086 (1646)
Q Consensus 1012 s~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~---~~~~~~~v~ailDPlse~aQk~~~ll~~l~~~~~v~i~i 1086 (1646)
||..|++++....+...+ ++..+..++..|+++.++ ++.+.|+|+|||||+||.||||+|||++|+++.||+|+|
T Consensus 1 sD~~~~~~s~l~~~~~~~~~r~~~~~~~~~~~s~~~~~~~~~~~~~i~v~~vvDPlse~aQkl~sll~~l~~~~~v~i~i 80 (211)
T PF06427_consen 1 SDWFMLVSSLLSSSFHRDSSRVDRFDFLSDNHSSFEVGPKDNDESPIDVVAVVDPLSEEAQKLASLLSVLSELPFVNIRI 80 (211)
T ss_pred CcEEEEeeeeeeccccCccceeeehhccCCCceEEEecCCCCCCccEEEEEEECCCCHHHHHHHHHHHHHHhccCceEEE
Confidence 456677777665554444 344557888889999886 345689999999999999999999999999999999999
Q ss_pred EEccCCCCCccCccceeecccCCCcCCCCCCccccCCceeeccCCCCCceEEeccCCCCeEEeeecccccCCcccccccC
Q 000334 1087 VLNPMSSLVDIPLKNYYRYVVPTMDDFSNTDYSISGPKAFFANMPLSKTLTMNLDVPEPWLVEPVIAVHDLDNILLEKLG 1166 (1646)
Q Consensus 1087 ~LnP~~~l~elPlkrfYR~v~~~~~~F~~~g~~~~~p~a~F~~lP~~~lltl~md~P~~WlV~~~~a~~DLDNI~L~~~~ 1166 (1646)
+|||+.+++|+|||||||||+++++.||++|.++. |.|.|++||.+++||++||+|++|+|+|++|.||||||+|++++
T Consensus 81 ~LnP~~~~~elPlkrFYR~v~~~~~~F~~~G~~~~-p~a~F~~lP~~~llTl~~d~P~sW~V~~~~a~~DLDNI~l~~~~ 159 (211)
T PF06427_consen 81 LLNPTSKLSELPLKRFYRYVLPSEPQFDADGRLIP-PSAVFSNLPSSPLLTLGMDVPESWLVEPKEAVYDLDNIKLSDLS 159 (211)
T ss_pred EECCccccCcceeeeEEeecCCcccccCCCCCccC-ceeEEecCcCCceEEecCCCCCceEEEEeecCcCCCceecccCC
Confidence 99999999999999999999999999999999987 99999999999999999999999999999999999999999997
Q ss_pred CCcceEEEEEeeeEEEEEEeccCCC-CCCCCeEEEEecCCCCcccceEEEec
Q 000334 1167 DTRTLQAVFELEALVLTGHCSEKDH-EPPQGLQLILGTKSTPHLVDTLVMAN 1217 (1646)
Q Consensus 1167 ~~~~v~a~yeLe~iliEGha~d~~~-~pprGlqL~L~t~~~~~~~DTiVMan 1217 (1646)
++..|+|+||||||||||||+|..+ .|||||||+|++..+++.+|||||||
T Consensus 160 ~~~~v~a~y~Le~iLieG~~~d~~~~~pp~Glql~L~~~~~~~~~DTiVMaN 211 (211)
T PF06427_consen 160 SGTTVEAVYELESILIEGHARDITTGSPPRGLQLQLGTENGPHSVDTIVMAN 211 (211)
T ss_pred CCceEEEEEEEeeEEEEeEEeecCCCCCCCCcEEEEecCCCCcccCceEeCC
Confidence 5446999999999999999999987 99999999999999999999999998
No 3
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=100.00 E-value=9.1e-52 Score=472.64 Aligned_cols=248 Identities=78% Similarity=1.420 Sum_probs=232.5
Q ss_pred eEEEEeecCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCChhHHHHHHHHHhhcCcEEEEEEecCCcccccccccccHH
Q 000334 1339 INIFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRII 1418 (1646)
Q Consensus 1339 InIf~vas~~~ye~~l~v~I~SIl~nt~~~v~F~il~~~lS~~~k~~L~~l~~~~~~~i~~v~~~wp~~L~~~~~~~r~~ 1418 (1646)
||||+|++|+.|+.++++||+||++|++.+++|||+++++|+++++.|+++.++++++++++.++||.|++.+....+..
T Consensus 1 ini~~~~~~~~y~~~~~v~l~Sll~nn~~~~~fyil~~~is~e~~~~l~~~~~~~~~~i~~i~i~~~~~~~~~~~~~~~~ 80 (248)
T cd06432 1 INIFSVASGHLYERFLRIMMLSVMKNTKSPVKFWFIKNFLSPQFKEFLPEMAKEYGFEYELVTYKWPRWLHKQTEKQRII 80 (248)
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHHHcCCCCEEEEEEeCCCCHHHHHHHHHHHHHhCCceEEEEecChhhhhcccccchhH
Confidence 79999999999999999999999999987899999999999999999999999999999999999999988766555556
Q ss_pred HHHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhcCCCCCeeEEeeecCCCCccCCcccccccccccccCCCCeeec
Q 000334 1419 WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLRGRPYHIS 1498 (1646)
Q Consensus 1419 ~~y~RLfL~~LfP~~vdkVIYLDaD~Iv~~Dl~eL~~lDl~g~~~aav~d~~s~~~~~g~~fw~~gyw~~~l~~~~YfNS 1498 (1646)
|+|+||+++.+||++++||||||+|+||++||++||++||+|+++|||++|....+..+.++|.++||+..+.++.||||
T Consensus 81 ~~y~rL~~~~lLP~~vdkvLYLD~Dilv~~dL~eL~~~dl~~~~~Aav~d~~~~~~~~~~~~~~~~~~~~~l~~~~YfNS 160 (248)
T cd06432 81 WGYKILFLDVLFPLNVDKVIFVDADQIVRTDLKELMDMDLKGAPYGYTPFCDSRKEMDGFRFWKQGYWKSHLRGRPYHIS 160 (248)
T ss_pred HHHHHHHHHHhhhhccCEEEEEcCCceecccHHHHHhcCcCCCeEEEeeccccchhcccchhhhhhhhhhhcCCCCccce
Confidence 89999999999999999999999999999999999999999999999999987655667789999999887777789999
Q ss_pred ceeeeeHHHHHhhcHHHHHHHHHHHhccCCCCCCCCCcChHhHhhccCcccccCCcccccCCccCccccCCCeEEEccCC
Q 000334 1499 ALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVPIFSLPQEWLWCESWCGNATKSKAKTIDLCNN 1578 (1646)
Q Consensus 1499 GvlliNL~~~R~~~~~dkl~~~~q~Ls~~~~sl~~~DQDllN~v~~~~~I~~Lp~~wN~~~~~~~~~~~~~akiI~~~~n 1578 (1646)
|||||||++||+.+++++++++|+.++.++.++.++|||+||.++++.+++.||++||||+.||.++.++.|+|||||+|
T Consensus 161 GVmliNL~~wR~~~i~~~~~~~~~~l~~~~~~l~~~DQDiLN~v~~~~~i~~Lp~~w~~~~~~~~~~~~~~~~~~~~~~~ 240 (248)
T cd06432 161 ALYVVDLKRFRRIAAGDRLRGQYQQLSQDPNSLANLDQDLPNNMQHQVPIFSLPQEWLWCETWCSDESKKKAKTIDLCNN 240 (248)
T ss_pred eeEEEeHHHHHHHhHHHHHHHHHHHHhcCCCccccCCchhhHHHhccCCeEECChHHHHHHHHhcccccCccceeecccC
Confidence 99999999999999999999999999888888999999999999987679999999999999999999999999999999
Q ss_pred CCCCChhh
Q 000334 1579 PMTKEPKL 1586 (1646)
Q Consensus 1579 p~tk~~kl 1586 (1646)
|.+|||++
T Consensus 241 ~~~~~~~~ 248 (248)
T cd06432 241 PLTKEPKL 248 (248)
T ss_pred CCCCCCCC
Confidence 99999874
No 4
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=100.00 E-value=6.3e-37 Score=351.64 Aligned_cols=236 Identities=29% Similarity=0.397 Sum_probs=194.0
Q ss_pred eEEEEeecCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCChhHHHHHHHHHhhcCcEEEEEEecCCcccccccc-cccH
Q 000334 1339 INIFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKE-KQRI 1417 (1646)
Q Consensus 1339 InIf~vas~~~ye~~l~v~I~SIl~nt~~~v~F~il~~~lS~~~k~~L~~l~~~~~~~i~~v~~~wp~~L~~~~~-~~r~ 1417 (1646)
|||+++|+|++|.++++++|.||++|++.+++|||+++++|++.++.|..+...+++.++|++++++.+...+.. +.+.
T Consensus 1 ~~i~~~a~d~~y~~~~~v~i~Sl~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 80 (246)
T cd00505 1 IAIVIVATGDEYLRGAIVLMKSVLRHRTKPLRFHVLTNPLSDTFKAALDNLRKLYNFNYELIPVDILDSVDSEHLKRPIK 80 (246)
T ss_pred CeEEEEecCcchhHHHHHHHHHHHHhCCCCeEEEEEEccccHHHHHHHHHHHhccCceEEEEeccccCcchhhhhcCccc
Confidence 799999999999999999999999998889999999999999999999999888899999999998776544332 2233
Q ss_pred HHHHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhcCCCCCeeEEeeecCCCCccCCcccccccccccccCCCCeee
Q 000334 1418 IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLRGRPYHI 1497 (1646)
Q Consensus 1418 ~~~y~RLfL~~LfP~~vdkVIYLDaD~Iv~~Dl~eL~~lDl~g~~~aav~d~~s~~~~~g~~fw~~gyw~~~l~~~~YfN 1497 (1646)
.++|+||++|.+|| +++||||||+|+||++||++||++|++++++|||++|.........+ +|.....+.+|||
T Consensus 81 ~~~y~RL~i~~llp-~~~kvlYLD~D~iv~~di~~L~~~~l~~~~~aav~d~~~~~~~~~~~-----~~~~~~~~~~yfN 154 (246)
T cd00505 81 IVTLTKLHLPNLVP-DYDKILYVDADILVLTDIDELWDTPLGGQELAAAPDPGDRREGKYYR-----QKRSHLAGPDYFN 154 (246)
T ss_pred cceeHHHHHHHHhh-ccCeEEEEcCCeeeccCHHHHhhccCCCCeEEEccCchhhhccchhh-----cccCCCCCCCcee
Confidence 48999999999999 89999999999999999999999999999999999986432222222 2222334568999
Q ss_pred cceeeeeHHHHHhhcHHHHHHHHHHHhccCCCCCCCCCcChHhHhhccC--cccccCCcccccCCccCcc------ccCC
Q 000334 1498 SALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTV--PIFSLPQEWLWCESWCGNA------TKSK 1569 (1646)
Q Consensus 1498 SGvlliNL~~~R~~~~~dkl~~~~q~Ls~~~~sl~~~DQDllN~v~~~~--~I~~Lp~~wN~~~~~~~~~------~~~~ 1569 (1646)
||||||||++||+.+..+++...+. ....++.++|||+||.++.+. +|..||++||++.+++... ....
T Consensus 155 sGVmlinl~~~r~~~~~~~~~~~~~---~~~~~~~~~DQd~LN~~~~~~~~~i~~L~~~wN~~~~~~~~~~~~~~~~~~~ 231 (246)
T cd00505 155 SGVFVVNLSKERRNQLLKVALEKWL---QSLSSLSGGDQDLLNTFFKQVPFIVKSLPCIWNVRLTGCYRSLNCFKAFVKN 231 (246)
T ss_pred eeeEEEechHHHHHHHHHHHHHHHH---hhcccCccCCcHHHHHHHhcCCCeEEECCCeeeEEecCccccccchhhhcCC
Confidence 9999999999997777776666544 234568889999999999953 3999999999998776432 4568
Q ss_pred CeEEEccCCCCCCChh
Q 000334 1570 AKTIDLCNNPMTKEPK 1585 (1646)
Q Consensus 1570 akiI~~~~np~tk~~k 1585 (1646)
+++||||++ +|+|.
T Consensus 232 ~~iiHy~g~--~KPW~ 245 (246)
T cd00505 232 AKVIHFNGP--TKPWN 245 (246)
T ss_pred CEEEEeCCC--CCCCC
Confidence 999999985 57663
No 5
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=3e-35 Score=350.16 Aligned_cols=234 Identities=17% Similarity=0.204 Sum_probs=185.2
Q ss_pred ceeEEEEeecCcchHHHHHHHHHHHHhcCC-CCeEEEEEECCCChhHHHHHHHHHhhcCcEEEEEEecCCcccccccccc
Q 000334 1337 KTINIFSIASGHLYERFLKIMILSVLKNTC-RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQ 1415 (1646)
Q Consensus 1337 ~~InIf~vas~~~ye~~l~v~I~SIl~nt~-~~v~F~il~~~lS~~~k~~L~~l~~~~~~~i~~v~~~wp~~L~~~~~~~ 1415 (1646)
.+|||+. ++|++|..+++|+|.||+.|++ ..++||||++++|+++++.|.++++.++.+++++.++ +.++.......
T Consensus 24 ~~i~Iv~-~~D~ny~~~~~vsi~Sil~nn~~~~~~f~Il~~~is~e~~~~l~~l~~~~~~~i~~~~id-~~~~~~~~~~~ 101 (334)
T PRK15171 24 NSLDIAY-GIDKNFLFGCGVSIASVLLNNPDKSLVFHVFTDYISDADKQRFSALAKQYNTRINIYLIN-CERLKSLPSTK 101 (334)
T ss_pred CceeEEE-ECcHhhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEeC-HHHHhCCcccC
Confidence 5799986 5799999999999999999876 4699999999999999999999999999999999987 45554322222
Q ss_pred c-HHHHHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhcCCCCCeeEEee-ecCCCCccCCcccccccccccccC--
Q 000334 1416 R-IIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTP-FCDNNKDMDGYRFWRQGFWKDHLR-- 1491 (1646)
Q Consensus 1416 r-~~~~y~RLfL~~LfP~~vdkVIYLDaD~Iv~~Dl~eL~~lDl~g~~~aav~-d~~s~~~~~g~~fw~~gyw~~~l~-- 1491 (1646)
+ ..++|+|||+|.+||+++|||||||||+||++||++||++|+++..+|||. ++.. .+|... +..+.
T Consensus 102 ~~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~dl~~L~~~dl~~~~~aav~~d~~~-------~~~~~~--~~~l~~~ 172 (334)
T PRK15171 102 NWTYATYFRFIIADYFIDKTDKVLYLDADIACKGSIKELIDLDFAENEIAAVVAEGDA-------EWWSKR--AQSLQTP 172 (334)
T ss_pred cCCHHHHHHHHHHHhhhhhcCEEEEeeCCEEecCCHHHHHhccCCCCeEEEEEeccch-------hHHHHH--HHhcCCc
Confidence 2 238999999999999889999999999999999999999999976777764 4321 112111 11111
Q ss_pred --CCCeeecceeeeeHHHHHhhcHHHHHHHHHHHhccCCCCCCCCCcChHhHhhccCcccccCCcccccCCcc-------
Q 000334 1492 --GRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVPIFSLPQEWLWCESWC------- 1562 (1646)
Q Consensus 1492 --~~~YfNSGvlliNL~~~R~~~~~dkl~~~~q~Ls~~~~sl~~~DQDllN~v~~~~~I~~Lp~~wN~~~~~~------- 1562 (1646)
+..|||||||||||++||+.++++++++++..- .....+.++|||+||.++. +.|..||++||++.+..
T Consensus 173 ~~~~~YFNsGVlliNl~~wRe~~i~~k~~~~l~~~-~~~~~~~~~DQDiLN~~~~-~~~~~L~~~wN~~~~~~~~~~~~~ 250 (334)
T PRK15171 173 GLASGYFNSGFLLINIPAWAQENISAKAIEMLADP-EIVSRITHLDQDVLNILLA-GKVKFIDAKYNTQFSLNYELKDSV 250 (334)
T ss_pred cccccceecceEEEcHHHHHHhhHHHHHHHHHhcc-ccccceeecChhHHHHHHc-CCeEECCHhhCCccchhHHHHhcc
Confidence 246999999999999999999999999988720 0124688899999999999 58889999999986532
Q ss_pred CccccCCCeEEEccCCCCCCChh
Q 000334 1563 GNATKSKAKTIDLCNNPMTKEPK 1585 (1646)
Q Consensus 1563 ~~~~~~~akiI~~~~np~tk~~k 1585 (1646)
.......+++||||+ .+|+|+
T Consensus 251 ~~~~~~~p~IIHy~G--~~KPW~ 271 (334)
T PRK15171 251 INPVNDETVFIHYIG--PTKPWH 271 (334)
T ss_pred cccccCCCEEEEECC--CCCCCC
Confidence 122235689999997 357774
No 6
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=100.00 E-value=3e-33 Score=324.98 Aligned_cols=253 Identities=19% Similarity=0.202 Sum_probs=183.5
Q ss_pred eEEEEeecCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCChhHHHHHHHHHhhcCcEEEEEEecCCccccc-c-ccccc
Q 000334 1339 INIFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHK-Q-KEKQR 1416 (1646)
Q Consensus 1339 InIf~vas~~~ye~~l~v~I~SIl~nt~~~v~F~il~~~lS~~~k~~L~~l~~~~~~~i~~v~~~wp~~L~~-~-~~~~r 1416 (1646)
|++..|+++++|.+.+++||+||+.|+..+++||||++++|.+.++.|.+..+.+++++.|++++ .+... . ....+
T Consensus 1 ~~~~iv~~~~~y~~~~~~~i~Sil~n~~~~~~fhii~d~~s~~~~~~l~~~~~~~~~~i~f~~i~--~~~~~~~~~~~~~ 78 (280)
T cd06431 1 IHVAIVCAGYNASRDVVTLVKSVLFYRRNPLHFHLITDEIARRILATLFQTWMVPAVEVSFYNAE--ELKSRVSWIPNKH 78 (280)
T ss_pred CEEEEEEccCCcHHHHHHHHHHHHHcCCCCEEEEEEECCcCHHHHHHHHHhccccCcEEEEEEhH--HhhhhhccCcccc
Confidence 45666677799999999999999999888899999999999999999988888889999999884 21111 0 01123
Q ss_pred HH--HHHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhc--CCCC-CeeEEeeecCCCCccCCcccccc-ccccccc
Q 000334 1417 II--WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDM--DIKG-RPLAYTPFCDNNKDMDGYRFWRQ-GFWKDHL 1490 (1646)
Q Consensus 1417 ~~--~~y~RLfL~~LfP~~vdkVIYLDaD~Iv~~Dl~eL~~l--Dl~g-~~~aav~d~~s~~~~~g~~fw~~-gyw~~~l 1490 (1646)
.+ .+|+|||+|.+||++++||||||+|+||++||++||++ |+.| +++|++++... ...+ ..|.. ..| .
T Consensus 79 ~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~di~eL~~~~~~~~~~~~~a~v~~~~~--~~~~-~~~~~~~~~---~ 152 (280)
T cd06431 79 YSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATDIAELWKIFHKFTGQQVLGLVENQSD--WYLG-NLWKNHRPW---P 152 (280)
T ss_pred hhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcCCHHHHHHHhhhcCCCcEEEEeccchh--hhhh-hhhhccCCC---c
Confidence 22 47799999999998899999999999999999999998 7766 46666665311 0000 00110 001 1
Q ss_pred CCCCeeecceeeeeHHHHHhhcHHHHHHHHHHHhccCCCCCCCCCcChHhHhhccCc--ccccCCcccccCCccCc----
Q 000334 1491 RGRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVP--IFSLPQEWLWCESWCGN---- 1564 (1646)
Q Consensus 1491 ~~~~YfNSGvlliNL~~~R~~~~~dkl~~~~q~Ls~~~~sl~~~DQDllN~v~~~~~--I~~Lp~~wN~~~~~~~~---- 1564 (1646)
....|||||||||||++||+.++.+++.....+.......+.++|||+||.++.+.+ ++.||++||+|.++...
T Consensus 153 ~~~~yFNsGVmlinL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~DQDiLN~v~~~~~~~~~~L~~~wN~~~~~~~~~~~~ 232 (280)
T cd06431 153 ALGRGFNTGVILLDLDKLRKMKWESMWRLTAERELMSMLSTSLADQDIFNAVIKQNPFLVYQLPCAWNVQLSDHTRSEQC 232 (280)
T ss_pred ccccceeeeeeeeeHHHHHhhCHHHHHHHHHHHHHhhcCCCCcCcHHHHHHHHcCCcceeEECCCccccccCccchHhHh
Confidence 113599999999999999999999998865543211234577899999999999644 78899999998643211
Q ss_pred -cccCCCeEEEccCCCCCCChhhH-HhhhcccCCchhhH
Q 000334 1565 -ATKSKAKTIDLCNNPMTKEPKLQ-GARRIVSEWPDLDS 1601 (1646)
Q Consensus 1565 -~~~~~akiI~~~~np~tk~~kl~-~a~r~~~~w~~~d~ 1601 (1646)
...+.+++|||++ .+|+|... .+..++..|..|.+
T Consensus 233 ~~~~~~p~IIHf~g--~~KPW~~~~~~~~~~~~~~~~~~ 269 (280)
T cd06431 233 YRDVSDLKVIHWNS--PKKLRVKNKHVEFFRNLYLTFLE 269 (280)
T ss_pred hcCcCCCEEEEeCC--CCCCCCcCCCChHHHHHHHHHHh
Confidence 1135789999997 35655422 23445566665554
No 7
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=100.00 E-value=9e-33 Score=319.14 Aligned_cols=264 Identities=18% Similarity=0.273 Sum_probs=197.2
Q ss_pred eEEEEeecCcchHHHHHHHHHHHHhcCCCCeEEEEEECC-CChhHHHHHHHHHhhcCcEE--EEEEecCCcccccccccc
Q 000334 1339 INIFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIKNY-LSPQFKDVIPHMAQEYGFEY--ELITYKWPTWLHKQKEKQ 1415 (1646)
Q Consensus 1339 InIf~vas~~~ye~~l~v~I~SIl~nt~~~v~F~il~~~-lS~~~k~~L~~l~~~~~~~i--~~v~~~wp~~L~~~~~~~ 1415 (1646)
|||..|+||+. .+.+.+||+|++.|+..+++|||+.++ +++++++.+.++...++..+ .++.+.+|..-.....+-
T Consensus 1 ~~~~vv~~g~~-~~~~~~~lkSil~~n~~~l~Fhi~~d~~~~~~~~~~l~~~~~~~~~~i~~~i~~I~~P~~~~~~ws~l 79 (304)
T cd06430 1 MHLAVVACGER-LEETLTMLKSAIVFSQKPLRFHIFAEDQLKQSFKEKLDDWPELIDRKFNYTLHPITFPSGNAAEWKKL 79 (304)
T ss_pred CEEEEEEcCCc-HHHHHHHHHHHHHhCCCCEEEEEEECCccCHHHHHHHHHHHHhccceeeeEEEEEecCccchhhhhhc
Confidence 57888889977 688899999999998889999999987 89999999999976654433 666666664110000000
Q ss_pred cHHHHHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhc--CCCCC-eeEEeeecCCCCccCCcccccccccccccCC
Q 000334 1416 RIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDM--DIKGR-PLAYTPFCDNNKDMDGYRFWRQGFWKDHLRG 1492 (1646)
Q Consensus 1416 r~~~~y~RLfL~~LfP~~vdkVIYLDaD~Iv~~Dl~eL~~l--Dl~g~-~~aav~d~~s~~~~~g~~fw~~gyw~~~l~~ 1492 (1646)
-...+|+|||+|.+|| ++|||||||+|+||.+||.|||++ |+++. .+|++|+.... ...|...+......+
T Consensus 80 ~~~~~y~RL~ip~lLp-~~dkvLYLD~Dii~~~dI~eL~~~~~df~~~~~aA~v~e~~~~-----~~~~~~~~~~~~~~~ 153 (304)
T cd06430 80 FKPCAAQRLFLPSLLP-DVDSLLYVDTDILFLRPVEEIWSFLKKFNSTQLAAMAPEHEEP-----NIGWYNRFARHPYYG 153 (304)
T ss_pred ccHHHHHHHHHHHHhh-hhceEEEeccceeecCCHHHHHHHHhhcCCCeEEEEEeccccc-----chhhhhhhcccCccc
Confidence 0137899999999999 899999999999999999999999 99885 55566653210 011221111111124
Q ss_pred CCeeecceeeeeHHHHHh-----------hcHHHHHHHHHHHhccCCCCCCCCCcChHhHhhccCc--ccccCCcccccC
Q 000334 1493 RPYHISALYVVDLKRFRE-----------TAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVP--IFSLPQEWLWCE 1559 (1646)
Q Consensus 1493 ~~YfNSGvlliNL~~~R~-----------~~~~dkl~~~~q~Ls~~~~sl~~~DQDllN~v~~~~~--I~~Lp~~wN~~~ 1559 (1646)
..|||||||||||++||+ .++.++++.+++ .+...+.++|||+||.++++.| ++.||++||++.
T Consensus 154 ~~gFNSGVmLmNL~~wR~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~DQDiLN~v~~~~p~~~~~Lp~~wN~~~ 230 (304)
T cd06430 154 KTGVNSGVMLMNLTRMRRKYFKNDMTPVGLRWEEILMPLYK---KYKLKITWGDQDLINIIFHHNPEMLYVFPCHWNYRP 230 (304)
T ss_pred ccccccceeeeeHHHHHhhhcccccchhhhhHHHHHHHHHH---hcccCCCCCCHHHHHHHHcCCCCeEEEcCccccCCc
Confidence 468999999999999999 788999999988 4567788999999999999754 889999999866
Q ss_pred Ccc------CccccCCCeEEEccCCCC--CCChhhHHhhhcccCCchhhHHHHHHHHHhcc
Q 000334 1560 SWC------GNATKSKAKTIDLCNNPM--TKEPKLQGARRIVSEWPDLDSEARQFTAKILG 1612 (1646)
Q Consensus 1560 ~~~------~~~~~~~akiI~~~~np~--tk~~kl~~a~r~~~~w~~~d~~~~~~~~~~~~ 1612 (1646)
+.| .....+.+++||+..-.. .|.|.+.+.+..+.+....++..++++.++..
T Consensus 231 d~~~y~~~~~~~~~~~~~~~H~n~~~~~~~~~~~f~~~~~~~~~~~~g~~~~~~~~~~l~~ 291 (304)
T cd06430 231 DHCMYGSNCKAAEEEGVFILHGNRGVYHSDKQPAFRAVYEAIREYTFGDDLHQSLLRPLEL 291 (304)
T ss_pred cceeecccccccccccceEEEcCCCCCCCccchHHHHHHHHHHhcccccchHHHhHHHHHH
Confidence 544 223346789999854222 47787878777777777667777788887743
No 8
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=100.00 E-value=5.6e-33 Score=319.25 Aligned_cols=232 Identities=21% Similarity=0.308 Sum_probs=191.4
Q ss_pred eEEEEeecCcchHHHHHHHHHHHHhcCC-CCeEEEEEECCCChhHHHHHHHHHhhcCcEEEEEEecCCcccccc-ccccc
Q 000334 1339 INIFSIASGHLYERFLKIMILSVLKNTC-RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQ-KEKQR 1416 (1646)
Q Consensus 1339 InIf~vas~~~ye~~l~v~I~SIl~nt~-~~v~F~il~~~lS~~~k~~L~~l~~~~~~~i~~v~~~wp~~L~~~-~~~~r 1416 (1646)
|||+. ++|.+|..++++++.|+++|++ .+++|||++++++++.++.|+.+...++..|+++.++++.+...+ ..+..
T Consensus 1 ~~I~~-~~d~~y~~~~~~~l~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~ 79 (248)
T cd04194 1 MNIVF-AIDDNYAPYLAVTIKSILANNSKRDYDFYILNDDISEENKKKLKELLKKYNSSIEFIKIDNDDFKFFPATTDHI 79 (248)
T ss_pred CCEEE-EecHhhHHHHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEcCHHHHhcCCcccccc
Confidence 68876 5789999999999999999988 589999999999999999999998888999999999865543333 22222
Q ss_pred HHHHHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhcCCCCCeeEEeeecCCCCccCCcccccccccccccCCCCee
Q 000334 1417 IIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLRGRPYH 1496 (1646)
Q Consensus 1417 ~~~~y~RLfL~~LfP~~vdkVIYLDaD~Iv~~Dl~eL~~lDl~g~~~aav~d~~s~~~~~g~~fw~~gyw~~~l~~~~Yf 1496 (1646)
...+|+|||+|.+|| +++||||||+|+||.+||.+||++|++|+++||++||..... ..++ .......+..||
T Consensus 80 ~~~~y~rl~l~~ll~-~~~rvlylD~D~lv~~di~~L~~~~~~~~~~aa~~d~~~~~~----~~~~--~~~~~~~~~~yf 152 (248)
T cd04194 80 SYATYYRLLIPDLLP-DYDKVLYLDADIIVLGDLSELFDIDLGDNLLAAVRDPFIEQE----KKRK--RRLGGYDDGSYF 152 (248)
T ss_pred cHHHHHHHHHHHHhc-ccCEEEEEeCCEEecCCHHHHhcCCcCCCEEEEEecccHHHH----HHHH--hhcCCCccccee
Confidence 348999999999999 899999999999999999999999999999999999753210 0010 001122356899
Q ss_pred ecceeeeeHHHHHhhcHHHHHHHHHHHhccCCCCCCCCCcChHhHhhccCcccccCCcccccCCccCcc-----------
Q 000334 1497 ISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVPIFSLPQEWLWCESWCGNA----------- 1565 (1646)
Q Consensus 1497 NSGvlliNL~~~R~~~~~dkl~~~~q~Ls~~~~sl~~~DQDllN~v~~~~~I~~Lp~~wN~~~~~~~~~----------- 1565 (1646)
||||||+|+++||+.++.++++++++ ..+..+.++|||+||.+|.+ .+..||.+||++.+++...
T Consensus 153 NsGv~l~nl~~~r~~~~~~~~~~~~~---~~~~~~~~~DQd~LN~~~~~-~~~~L~~~~N~~~~~~~~~~~~~~~~~~~~ 228 (248)
T cd04194 153 NSGVLLINLKKWREENITEKLLELIK---EYGGRLIYPDQDILNAVLKD-KILYLPPRYNFQTGFYYLLKKKSKEEQELE 228 (248)
T ss_pred eecchheeHHHHHHhhhHHHHHHHHH---hCCCceeeCChHHHHHHHhC-CeEEcCcccccchhHhHHhhccchhHHHHH
Confidence 99999999999999999999999988 35567889999999999995 6999999999998876432
Q ss_pred -ccCCCeEEEccCCCCCCCh
Q 000334 1566 -TKSKAKTIDLCNNPMTKEP 1584 (1646)
Q Consensus 1566 -~~~~akiI~~~~np~tk~~ 1584 (1646)
..+.+++|||++. .|+|
T Consensus 229 ~~~~~~~iiHf~g~--~KPW 246 (248)
T cd04194 229 EARKNPVIIHYTGS--DKPW 246 (248)
T ss_pred HHhcCCEEEEeCCC--CCCC
Confidence 3568999999985 3655
No 9
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=2.7e-31 Score=310.45 Aligned_cols=238 Identities=19% Similarity=0.175 Sum_probs=193.2
Q ss_pred eeEEEEeecCcchHHHHHHHHHHHHhcCCC-CeEEEEEECCCChhHHHHHHHHHhhcCcEEEEEEecCCccccccc-ccc
Q 000334 1338 TINIFSIASGHLYERFLKIMILSVLKNTCR-PVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQK-EKQ 1415 (1646)
Q Consensus 1338 ~InIf~vas~~~ye~~l~v~I~SIl~nt~~-~v~F~il~~~lS~~~k~~L~~l~~~~~~~i~~v~~~wp~~L~~~~-~~~ 1415 (1646)
+|||+. |.|++|..+++|+|+|++.|++. .++||+|.++++++++++|.++++.|+..+.++.++- +-+.... ...
T Consensus 2 ~~~Iv~-a~D~nY~~~~gvsI~SiL~~n~~~~~~fhil~~~i~~e~~~~l~~~~~~f~~~i~~~~id~-~~~~~~~~~~~ 79 (325)
T COG1442 2 TIPIAF-AFDKNYLIPAGVSIYSLLEHNRKIFYKFHILVDGLNEEDKKKLNETAEPFKSFIVLEVIDI-EPFLDYPPFTK 79 (325)
T ss_pred cccEEE-EcccccchhHHHHHHHHHHhCccccEEEEEEecCCCHHHHHHHHHHHHhhccceeeEEEec-hhhhccccccc
Confidence 589975 68999999999999999999996 8999999999999999999999999998888777762 3333222 334
Q ss_pred cHH-HHHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhcCCCCCeeEEeeecCCCCccCCcccccccccccc--cCC
Q 000334 1416 RII-WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDH--LRG 1492 (1646)
Q Consensus 1416 r~~-~~y~RLfL~~LfP~~vdkVIYLDaD~Iv~~Dl~eL~~lDl~g~~~aav~d~~s~~~~~g~~fw~~gyw~~~--l~~ 1492 (1646)
|.+ ++|+|+|++++||+ .||+||+|+|+||.||+++||++|++++++|||.|+.+.. |.++--+.. ...
T Consensus 80 ~~s~~v~~R~fiadlf~~-~dK~lylD~Dvi~~g~l~~lf~~~~~~~~~aaV~D~~~~~-------~~~~~~~~~~~~~~ 151 (325)
T COG1442 80 RFSKMVLVRYFLADLFPQ-YDKMLYLDVDVIFCGDLSELFFIDLEEYYLAAVRDVFSHY-------MKEGALRLEKGDLE 151 (325)
T ss_pred chHHHHHHHHHHHHhccc-cCeEEEEecCEEEcCcHHHHHhcCCCcceEEEEeehhhhh-------hhhhhhHhhhcccc
Confidence 444 89999999999996 5999999999999999999999999999999999976432 121110111 113
Q ss_pred CCeeecceeeeeHHHHHhhcHHHHHHHHHHHhccCCCCCCCCCcChHhHhhccCcccccCCcccccCCccC-------cc
Q 000334 1493 RPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVPIFSLPQEWLWCESWCG-------NA 1565 (1646)
Q Consensus 1493 ~~YfNSGvlliNL~~~R~~~~~dkl~~~~q~Ls~~~~sl~~~DQDllN~v~~~~~I~~Lp~~wN~~~~~~~-------~~ 1565 (1646)
..||||||+++|++.||+.++.+++.+... ...+.+.++|||+||.+++ +++..||.+||.+.+.-. ..
T Consensus 152 ~~yFNaG~llinl~~W~~~~i~~k~i~~~~---~~~~~~~~~DQdiLN~i~~-~~~~~L~~~YN~~~~~~~~~~~~~~~~ 227 (325)
T COG1442 152 GSYFNAGVLLINLKLWREENIFEKLIELLK---DKENDLLYPDQDILNMIFE-DRVLELPIRYNAIPYIDSQLKDKYIYP 227 (325)
T ss_pred cccCccceeeehHHHHHHhhhHHHHHHHHh---ccccccCCccccHHHHHHH-hhhhccCcccceeehhhhccchhhhcc
Confidence 689999999999999999999999999986 3447899999999999999 489999999999864322 33
Q ss_pred ccCCCeEEEccCCCCCCChhhHHhhh
Q 000334 1566 TKSKAKTIDLCNNPMTKEPKLQGARR 1591 (1646)
Q Consensus 1566 ~~~~akiI~~~~np~tk~~kl~~a~r 1591 (1646)
....+.++|||+ .+|+|+...+.+
T Consensus 228 ~~~~~~iiHy~g--~~KPW~~~~~~~ 251 (325)
T COG1442 228 FGDDPVILHYAG--PTKPWHSDSSNY 251 (325)
T ss_pred CCCCceEEEecC--CCCCCcCccccc
Confidence 445677999998 457777776544
No 10
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=99.97 E-value=1.4e-31 Score=306.88 Aligned_cols=227 Identities=15% Similarity=0.159 Sum_probs=178.4
Q ss_pred eEEEEeecCcchHHHHHHHHHHHHhcCC--CCeEEEEEECCCChhHHHHHHHHHhhcCcEEEEEEecCCcccccc-----
Q 000334 1339 INIFSIASGHLYERFLKIMILSVLKNTC--RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQ----- 1411 (1646)
Q Consensus 1339 InIf~vas~~~ye~~l~v~I~SIl~nt~--~~v~F~il~~~lS~~~k~~L~~l~~~~~~~i~~v~~~wp~~L~~~----- 1411 (1646)
+||++ ++| +|. .+++++.|++.|++ .+++|||+++++|.+.++.+......++.+|+++.++ +..+...
T Consensus 1 ~hiv~-~~D-n~l-~~~v~i~S~l~nn~~~~~~~fhvvtd~~s~~~~~~~~~~~~~~~~~i~~~~i~-~~~~~~~~~~~~ 76 (257)
T cd06429 1 IHVVI-FSD-NRL-AAAVVINSSISNNKDPSNLVFHIVTDNQNYGAMRSWFDLNPLKIATVKVLNFD-DFKLLGKVKVDS 76 (257)
T ss_pred CCEEE-Eec-chh-HHHHHHHHHHHhCCCCCceEEEEecCccCHHHHHHHHHhcCCCCceEEEEEeC-cHHhhcccccch
Confidence 57865 567 787 47788888888775 4799999999999888877777776679999999996 3322111
Q ss_pred ---------------cccccH-HHHHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhcCCCCCeeEEeeecCCCCcc
Q 000334 1412 ---------------KEKQRI-IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDM 1475 (1646)
Q Consensus 1412 ---------------~~~~r~-~~~y~RLfL~~LfP~~vdkVIYLDaD~Iv~~Dl~eL~~lDl~g~~~aav~d~~s~~~~ 1475 (1646)
....+. ..+|+||++|.+|| +++||||||||+||++||+|||++|++|+++|||+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp-~~~kvlYLD~Dviv~~dl~eL~~~dl~~~~~aav~d------- 148 (257)
T cd06429 77 LMQLESEADTSNLKQRKPEYISLLNFARFYLPELFP-KLEKVIYLDDDVVVQKDLTELWNTDLGGGVAGAVET------- 148 (257)
T ss_pred hhhhhccccccccccCCccccCHHHHHHHHHHHHhh-hhCeEEEEeCCEEEeCCHHHHhhCCCCCCEEEEEhh-------
Confidence 111222 27999999999999 699999999999999999999999999999999965
Q ss_pred CCcccccccccccccCCCCeeecceeeeeHHHHHhhcHHHHHHHHHHHhccCC-CCCCCCCcChHhHhhccCcccccCCc
Q 000334 1476 DGYRFWRQGFWKDHLRGRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDP-NSLANLDQDLPNYAQHTVPIFSLPQE 1554 (1646)
Q Consensus 1476 ~g~~fw~~gyw~~~l~~~~YfNSGvlliNL~~~R~~~~~dkl~~~~q~Ls~~~-~sl~~~DQDllN~v~~~~~I~~Lp~~ 1554 (1646)
|||||||||||++||+.++++++..+++...... .....+|||++|.++. +.+..||++
T Consensus 149 -------------------yfNsGV~linl~~wr~~~i~~~~~~~~~~~~~~~~~~~~~~dqd~ln~~~~-~~~~~L~~~ 208 (257)
T cd06429 149 -------------------SWNPGVNVVNLTEWRRQNVTETYEKWMELNQEEEVTLWKLITLPPGLIVFY-GLTSPLDPS 208 (257)
T ss_pred -------------------hcccceEEEeHHHHHhccHHHHHHHHHHHhhhcccchhhcCCccHHHHHcc-CeeEECChH
Confidence 8999999999999999999999999887432111 1245679999999999 589999999
Q ss_pred ccccCC-ccC---ccccCCCeEEEccCCCCCCChhhHHhhhcccCCchh
Q 000334 1555 WLWCES-WCG---NATKSKAKTIDLCNNPMTKEPKLQGARRIVSEWPDL 1599 (1646)
Q Consensus 1555 wN~~~~-~~~---~~~~~~akiI~~~~np~tk~~kl~~a~r~~~~w~~~ 1599 (1646)
||.+.- +.. .+....+++|||++ .+|+|.-..-.+..+.|+.|
T Consensus 209 wN~~~l~~~~~~~~~~~~~~~IIHy~G--~~KPW~~~~~~~~~~~w~~y 255 (257)
T cd06429 209 WHVRGLGYNYGIRPQDIKAAAVLHFNG--NMKPWLRTAIPSYKELWEKY 255 (257)
T ss_pred HcccCCcccccccccccCCcEEEEECC--CCCCcCCCCCChHHHHHHHH
Confidence 998731 211 12346899999998 36878765556677778765
No 11
>PLN02718 Probable galacturonosyltransferase
Probab=99.96 E-value=4.4e-30 Score=312.41 Aligned_cols=261 Identities=14% Similarity=0.169 Sum_probs=193.8
Q ss_pred cCceeEEEEeecCcchHHHHHHHHHHHHhcCC--CCeEEEEEECCCChhHHHHHHHHHhhcCcEEEEEEecCCccccc--
Q 000334 1335 HGKTINIFSIASGHLYERFLKIMILSVLKNTC--RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHK-- 1410 (1646)
Q Consensus 1335 ~~~~InIf~vas~~~ye~~l~v~I~SIl~nt~--~~v~F~il~~~lS~~~k~~L~~l~~~~~~~i~~v~~~wp~~L~~-- 1410 (1646)
+...+||+.. +| +| ..++|+|.|++.|++ ..++|||++++++...++.+..+...++..|+++.++=-.|+..
T Consensus 310 d~~~~Hia~~-sD-Nv-laasVvInSil~Ns~np~~ivFHVvTD~is~~~mk~wf~l~~~~~a~I~V~~Iddf~~lp~~~ 386 (603)
T PLN02718 310 DPDLYHYVVF-SD-NV-LACSVVVNSTISSSKEPEKIVFHVVTDSLNYPAISMWFLLNPPGKATIQILNIDDMNVLPADY 386 (603)
T ss_pred CCcceeEEEE-cC-Cc-eeEEEEhhhhhhccCCCCcEEEEEEeCCCCHHHHHHHHHhCCCCCcEEEEEecchhccccccc
Confidence 3456999753 55 46 489999999999954 46999999999999999988888877789999999861123321
Q ss_pred ------c-ccc-ccH-HHHHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhcCCCCCeeEEeeecCCC----CccCC
Q 000334 1411 ------Q-KEK-QRI-IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNN----KDMDG 1477 (1646)
Q Consensus 1411 ------~-~~~-~r~-~~~y~RLfL~~LfP~~vdkVIYLDaD~Iv~~Dl~eL~~lDl~g~~~aav~d~~s~----~~~~g 1477 (1646)
. ..+ .+. ..+|+||+||.+|| +++||||||+|+||++||.+||++||+|+++|||++|... ..+..
T Consensus 387 ~~~lk~l~s~~~~~~S~~~y~Rl~ipellp-~l~KvLYLD~DvVV~~DL~eL~~iDl~~~v~aaVedC~~~~~~~~~~~~ 465 (603)
T PLN02718 387 NSLLMKQNSHDPRYISALNHARFYLPDIFP-GLNKIVLFDHDVVVQRDLSRLWSLDMKGKVVGAVETCLEGEPSFRSMDT 465 (603)
T ss_pred hhhhhhccccccccccHHHHHHHHHHHHhc-ccCEEEEEECCEEecCCHHHHhcCCCCCcEEEEeccccccccchhhhhh
Confidence 1 111 122 37999999999999 6999999999999999999999999999999999999631 11110
Q ss_pred cccccccccc-ccc-CCCCeeecceeeeeHHHHHhhcHHHHHHHHHHHhccCCCCCCCCCcChHh---HhhccCcccccC
Q 000334 1478 YRFWRQGFWK-DHL-RGRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPN---YAQHTVPIFSLP 1552 (1646)
Q Consensus 1478 ~~fw~~gyw~-~~l-~~~~YfNSGvlliNL~~~R~~~~~dkl~~~~q~Ls~~~~sl~~~DQDllN---~v~~~~~I~~Lp 1552 (1646)
+..|. ..|. +.+ +..||||+||+||||++||+.++++++..+++. +... .+.|||.|| .+|. +.++.||
T Consensus 466 ~lnfs-~p~i~~~fn~~~CyfNsGVlLIDLk~WReenITe~~~~~l~~---n~~~-~l~dqdaLpp~LlvF~-gri~~LD 539 (603)
T PLN02718 466 FINFS-DPWVAKKFDPKACTWAFGMNLFDLEEWRRQKLTSVYHKYLQL---GVKR-PLWKAGSLPIGWLTFY-NQTVALD 539 (603)
T ss_pred hhhcc-chhhhcccCCCccccccceEEEeHHHHHhcChHHHHHHHHHh---ccCc-cccCcccccHHHHHhc-CceeecC
Confidence 00011 0111 112 357999999999999999999999999999873 3333 456999998 7777 5899999
Q ss_pred CcccccCCcc----CccccCCCeEEEccCCCCCCChhhHHhhhcccCCchhhHHHHHHH
Q 000334 1553 QEWLWCESWC----GNATKSKAKTIDLCNNPMTKEPKLQGARRIVSEWPDLDSEARQFT 1607 (1646)
Q Consensus 1553 ~~wN~~~~~~----~~~~~~~akiI~~~~np~tk~~kl~~a~r~~~~w~~~d~~~~~~~ 1607 (1646)
++||.+.-.+ ..+..+.|.||||+++ .|+|.-....++.+.|..|-+.=..++
T Consensus 540 ~rWNv~gLG~~~~i~~~~i~~aaIIHYnG~--~KPWle~~i~~yr~~W~k~v~~~~~~l 596 (603)
T PLN02718 540 KRWHVLGLGHESGVGASDIEQAAVIHYDGV--MKPWLDIGIGKYKRYWNIHVPYHHPYL 596 (603)
T ss_pred hHHhccCccccccccccccCCCEEEEECCC--CCccccCChhhHHHHHHhhcCCCChHH
Confidence 9999886432 2334678999999985 355544444578889987765444443
No 12
>PLN02523 galacturonosyltransferase
Probab=99.96 E-value=5.7e-29 Score=299.24 Aligned_cols=253 Identities=15% Similarity=0.212 Sum_probs=181.4
Q ss_pred eeEEEEeecCcchHHHHHHHHHHHHhcCCC--CeEEEEEECCCChhHHHHHHHHHhhcCcEEEEEEecCC-cccc----c
Q 000334 1338 TINIFSIASGHLYERFLKIMILSVLKNTCR--PVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWP-TWLH----K 1410 (1646)
Q Consensus 1338 ~InIf~vas~~~ye~~l~v~I~SIl~nt~~--~v~F~il~~~lS~~~k~~L~~l~~~~~~~i~~v~~~wp-~~L~----~ 1410 (1646)
-.|.+ |.+++ ...+.|+|.|++.|++. ++.|||+++.++...++.+-.+....+..|++..++ . .|+. +
T Consensus 248 l~Hy~-ifSdN--vlAAsVvInStv~Ns~~p~~~VFHIVTD~ln~~amk~Wf~~n~~~~a~I~V~~Ie-df~~ln~~~~p 323 (559)
T PLN02523 248 LYHYA-IFSDN--VIAASVVVNSAVKNAKEPWKHVFHVVTDRMNLAAMKVMFKMRDLNGAHVEVKAVE-DYKFLNSSYVP 323 (559)
T ss_pred cceEE-EecCc--chhhhhhHHHHHHccCCCcceEEEEEeCCCCHHHHHHHHhhCCCCCcEEEEEEee-hhhhcccccch
Confidence 35554 55665 77899999999999875 599999999999877766666655558888888875 2 2333 1
Q ss_pred ---ccc---------------------------cccH-HHHHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhcCCC
Q 000334 1411 ---QKE---------------------------KQRI-IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIK 1459 (1646)
Q Consensus 1411 ---~~~---------------------------~~r~-~~~y~RLfL~~LfP~~vdkVIYLDaD~Iv~~Dl~eL~~lDl~ 1459 (1646)
+-+ .... +.+|+||+||.+|| +++||||||+|+||++||++||++||+
T Consensus 324 vlk~l~s~~~~~~~f~~~~~~~~~~~~~~k~~~p~ylS~~ny~Rf~IPeLLP-~ldKVLYLD~DVVVq~DLseLw~iDL~ 402 (559)
T PLN02523 324 VLRQLESANLQKFYFENKLENATKDSSNMKFRNPKYLSMLNHLRFYLPEMYP-KLHRILFLDDDVVVQKDLTGLWKIDMD 402 (559)
T ss_pred HHHhhhhhhhhhhhccccccccccccccccccCcchhhHHHHHHHHHHHHhc-ccCeEEEEeCCEEecCCHHHHHhCcCC
Confidence 000 0112 27999999999999 699999999999999999999999999
Q ss_pred CCeeEEeeecCCC-CccCCccccccccccccc-CCCCeeecceeeeeHHHHHhhcHHHHHHHHHHHhccCCCCCCCCCcC
Q 000334 1460 GRPLAYTPFCDNN-KDMDGYRFWRQGFWKDHL-RGRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQD 1537 (1646)
Q Consensus 1460 g~~~aav~d~~s~-~~~~g~~fw~~gyw~~~l-~~~~YfNSGvlliNL~~~R~~~~~dkl~~~~q~Ls~~~~sl~~~DQD 1537 (1646)
|+++|||+||... .++.....+....-++++ ...||||+|||||||++||++++++++. +++.+.. ...+.|||
T Consensus 403 gkv~aAVeDc~~~~~r~~~~ln~s~p~i~~yFNs~aC~wnsGVmlINL~~WRe~nITek~~-~w~~ln~---~~~l~Dqd 478 (559)
T PLN02523 403 GKVNGAVETCFGSFHRYAQYLNFSHPLIKEKFNPKACAWAYGMNIFDLDAWRREKCTEQYH-YWQNLNE---NRTLWKLG 478 (559)
T ss_pred CceEEEehhhhhHHHHHHHhhcccchhhhhCcCCCcccccCCcEEEeHHHHHHhchHHHHH-HHHHhcc---cccccccc
Confidence 9999999999521 111000000000011122 2468888899999999999999999984 5665422 34568999
Q ss_pred hHh---HhhccCcccccCCcccccCCcc----CccccCCCeEEEccCCCCCCChhhHHhhhcccCCchhhHH
Q 000334 1538 LPN---YAQHTVPIFSLPQEWLWCESWC----GNATKSKAKTIDLCNNPMTKEPKLQGARRIVSEWPDLDSE 1602 (1646)
Q Consensus 1538 llN---~v~~~~~I~~Lp~~wN~~~~~~----~~~~~~~akiI~~~~np~tk~~kl~~a~r~~~~w~~~d~~ 1602 (1646)
.|| .+|. +.+++||++||++.-.+ +.+..+.|.||||+++ .|+|.-..-.++.+.|+.|-+.
T Consensus 479 aLpp~LivF~-gri~~LD~rWNvlglGy~~~i~~~~i~~paIIHYnG~--~KPWle~~i~~yr~~W~kYl~~ 547 (559)
T PLN02523 479 TLPPGLITFY-STTKPLDKSWHVLGLGYNPSISMDEIRNAAVIHFNGN--MKPWLDIAMNQFKPLWTKYVDY 547 (559)
T ss_pred ccchHHHHhc-CceEecCchhhccCCccCCCccccccCCCEEEEECCC--CCccccCCCCcchHHHHHHHcc
Confidence 996 6777 58999999999875322 3345678999999985 4666533335667778866443
No 13
>PLN02742 Probable galacturonosyltransferase
Probab=99.94 E-value=2.8e-26 Score=276.31 Aligned_cols=261 Identities=15% Similarity=0.210 Sum_probs=184.9
Q ss_pred ceeEEEEeecCcchHHHHHHHHHHHHhcCCCC--eEEEEEECCCChhHHHHHHHHHhhcCcEEEEEEecCC-cccccc--
Q 000334 1337 KTINIFSIASGHLYERFLKIMILSVLKNTCRP--VKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWP-TWLHKQ-- 1411 (1646)
Q Consensus 1337 ~~InIf~vas~~~ye~~l~v~I~SIl~nt~~~--v~F~il~~~lS~~~k~~L~~l~~~~~~~i~~v~~~wp-~~L~~~-- 1411 (1646)
....=++|.||+-- .+.|.|.|.+.|++.| +.|||+++..+-.-++..-....--+..+++++++ + .|+...
T Consensus 225 ~~l~Hy~ifSdNvl--AasvvvnStv~nsk~P~~~VFHiVTD~~n~~aM~~WF~~n~~~~a~v~V~n~e-~f~wl~~~~~ 301 (534)
T PLN02742 225 NNLYHFCVFSDNIL--ATSVVVNSTVSNAKHPDQLVFHLVTDEVNYGAMQAWFAMNDFKGVTVEVQKIE-EFSWLNASYV 301 (534)
T ss_pred CCcceEEEEeccch--hhhhhhhhhHhhhcCCCcEEEEEeechhhHHHHHHHHhhCCCCccEEEEEEec-cccccccccc
Confidence 33444566677543 4678899999999865 99999999887655544333333337888888885 2 344320
Q ss_pred -------------------------cc----ccc-HHHHHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhcCCCCC
Q 000334 1412 -------------------------KE----KQR-IIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGR 1461 (1646)
Q Consensus 1412 -------------------------~~----~~r-~~~~y~RLfL~~LfP~~vdkVIYLDaD~Iv~~Dl~eL~~lDl~g~ 1461 (1646)
.. ... ...+|+||+||.+|| +++||||||+|+||++||++||++||+|+
T Consensus 302 pvl~ql~~~~~~~~yf~~~~~~~~~~~k~r~p~y~s~~~y~R~~lP~llp-~l~KvlYLD~DvVV~~DL~eL~~~DL~~~ 380 (534)
T PLN02742 302 PVLKQLQDSDTQSYYFSGSQDDGKTEIKFRNPKYLSMLNHLRFYIPEIYP-ALEKVVFLDDDVVVQKDLTPLFSIDLHGN 380 (534)
T ss_pred hHHHHhhhhhhhhhhcccccccccccccccCcccccHHHHHHHHHHHHhh-ccCeEEEEeCCEEecCChHHHhcCCCCCC
Confidence 00 011 137999999999999 69999999999999999999999999999
Q ss_pred eeEEeeecCCC-CccCCccccccccccccc-CCCCeeecceeeeeHHHHHhhcHHHHHHHHHHHhccCCCCCCCCCcChH
Q 000334 1462 PLAYTPFCDNN-KDMDGYRFWRQGFWKDHL-RGRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLP 1539 (1646)
Q Consensus 1462 ~~aav~d~~s~-~~~~g~~fw~~gyw~~~l-~~~~YfNSGvlliNL~~~R~~~~~dkl~~~~q~Ls~~~~sl~~~DQDll 1539 (1646)
++|||++|... .++.++-+|.....+... ++.||||+||+||||++||+.++++.+. +++++ .......|||.+
T Consensus 381 viaAVedC~~~f~ry~~yLnfS~p~i~~~f~~~aC~fNsGV~ViDL~~WRe~nITe~~~-~w~e~---n~~~~l~d~gaL 456 (534)
T PLN02742 381 VNGAVETCLETFHRYHKYLNFSHPLISSHFDPDACGWAFGMNVFDLVAWRKANVTAIYH-YWQEQ---NVDRTLWKLGTL 456 (534)
T ss_pred EEEEeCchhhhhhhhhhhhcccchhhhccCCCCccccccCcEEEeHHHHHhhcHHHHHH-HHHHh---cccccccccccc
Confidence 99999999521 122222222222222222 3579999999999999999999999555 45533 223455799999
Q ss_pred hHh---hccCcccccCCcccccCCcc----CccccCCCeEEEccCCCCCCChhhHHhhhcccCCchhhHHHHHHHH
Q 000334 1540 NYA---QHTVPIFSLPQEWLWCESWC----GNATKSKAKTIDLCNNPMTKEPKLQGARRIVSEWPDLDSEARQFTA 1608 (1646)
Q Consensus 1540 N~v---~~~~~I~~Lp~~wN~~~~~~----~~~~~~~akiI~~~~np~tk~~kl~~a~r~~~~w~~~d~~~~~~~~ 1608 (1646)
|.+ |. +.+++||.+||.+.-.+ +.+..+.|+||||+++ .|+|.-....++.+.|..|.+.-..+++
T Consensus 457 pp~LLaF~-g~~~~LD~rWNv~gLG~~~~v~~~~i~~aaILHynG~--~KPWl~~~i~~yr~~W~kYl~~s~~fl~ 529 (534)
T PLN02742 457 PPGLLTFY-GLTEPLDRRWHVLGLGYDTNIDPRLIESAAVLHFNGN--MKPWLKLAIERYKPLWERYVNYSHPYLQ 529 (534)
T ss_pred chHHHHHc-CcceecChhheecccccccccchhhccCCeEEEECCC--CCcccccCCcccchHHHHHHccCCHHHH
Confidence 964 66 58999999999986322 2346689999999985 3544444445789999988776555544
No 14
>PLN02829 Probable galacturonosyltransferase
Probab=99.94 E-value=1.8e-26 Score=279.90 Aligned_cols=260 Identities=15% Similarity=0.218 Sum_probs=174.4
Q ss_pred eEEEEeecCcchHHHHHHHHHHHHhcCCC--CeEEEEEECCCChhHHHHHHHHHhhcCcEEEEEEec---CCc-----cc
Q 000334 1339 INIFSIASGHLYERFLKIMILSVLKNTCR--PVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYK---WPT-----WL 1408 (1646)
Q Consensus 1339 InIf~vas~~~ye~~l~v~I~SIl~nt~~--~v~F~il~~~lS~~~k~~L~~l~~~~~~~i~~v~~~---wp~-----~L 1408 (1646)
.+=++|.||+-. .+.|.+.|-+.|.+. ++.|||+++.++---+..--.+..--+..|+...+. |-. .+
T Consensus 331 l~Hy~ifSdNVL--AasVVVnStv~na~~p~k~VFHivTD~~ny~aM~~WF~~n~~~~A~v~V~nie~f~wln~~~~pvl 408 (639)
T PLN02829 331 LYHYALFSDNVL--AAAVVVNSTVTNAKHPSKHVFHIVTDRLNYAAMRMWFLVNPPGKATIQVQNIEEFTWLNSSYSPVL 408 (639)
T ss_pred cceEEEEeccee--EEEeeeehhhhcccCccceEEEEecCccchHHHHHHHhhCCCccceEEEEehhhcccccccccHHH
Confidence 333344555433 244677788888763 578888888776543321111211125566655552 311 01
Q ss_pred cc---c--------------------cccccHH-HHHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhcCCCCCeeE
Q 000334 1409 HK---Q--------------------KEKQRII-WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLA 1464 (1646)
Q Consensus 1409 ~~---~--------------------~~~~r~~-~~y~RLfL~~LfP~~vdkVIYLDaD~Iv~~Dl~eL~~lDl~g~~~a 1464 (1646)
+. . +...+.+ .+|+|||||.+|| +++||||||+|+||++||++||++||+|+++|
T Consensus 409 ~ql~~~~~~~~yf~~~~~~~~~~~k~r~p~ylS~lnY~RfyLPeLLP-~LdKVLYLD~DVVVqgDLseLw~iDL~gkviA 487 (639)
T PLN02829 409 KQLGSQSMIDYYFRAHRANSDSNLKYRNPKYLSILNHLRFYLPEIFP-KLNKVLFLDDDIVVQKDLTGLWSIDLKGNVNG 487 (639)
T ss_pred HHhhhhhhhhhhhhccccCcccccccCCcchhhHHHHHHHHHHHHhc-ccCeEEEEeCCEEeCCChHHHHhCCCCCceEE
Confidence 00 0 0011122 6899999999999 79999999999999999999999999999999
Q ss_pred EeeecCCC-CccCCcccccccccccccC-CCCeeecceeeeeHHHHHhhcHHHHHHHHHHHhccCCCCCCCCCcChHhHh
Q 000334 1465 YTPFCDNN-KDMDGYRFWRQGFWKDHLR-GRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYA 1542 (1646)
Q Consensus 1465 av~d~~s~-~~~~g~~fw~~gyw~~~l~-~~~YfNSGvlliNL~~~R~~~~~dkl~~~~q~Ls~~~~sl~~~DQDllN~v 1542 (1646)
||++|... .++....+|........+. ..||||+|||||||++||+.++++++..+++ + +..... .|||.||.+
T Consensus 488 AVedc~~~f~r~~~~l~fs~p~i~~~Fn~~~CyFNSGVmVINL~~WRe~nITe~y~~wm~-~--n~~r~L-~dlgaLPp~ 563 (639)
T PLN02829 488 AVETCGESFHRFDRYLNFSNPLISKNFDPHACGWAYGMNVFDLDEWKRQNITEVYHSWQK-L--NHDRQL-WKLGTLPPG 563 (639)
T ss_pred EeccchhhhhhhhhhhhccchHhhhccCCcccceecceEEEeHHHHHHhChHHHHHHHHH-H--ccCCcc-ccccCCChH
Confidence 99999642 1122222222111112222 5689999999999999999999999998875 2 333333 699999976
Q ss_pred h---ccCcccccCCcccccCCccCc----cccCCCeEEEccCCCCCCChhhHHhhhcccCCchhhHHHHHHHH
Q 000334 1543 Q---HTVPIFSLPQEWLWCESWCGN----ATKSKAKTIDLCNNPMTKEPKLQGARRIVSEWPDLDSEARQFTA 1608 (1646)
Q Consensus 1543 ~---~~~~I~~Lp~~wN~~~~~~~~----~~~~~akiI~~~~np~tk~~kl~~a~r~~~~w~~~d~~~~~~~~ 1608 (1646)
+ . +.+++||++||.+.-.+.. +..+.|.+|||+++. |+|.-....++.+.|..|.+.-..+++
T Consensus 564 Ll~F~-g~i~~LD~rWNv~GLGy~~~v~~~~i~~aaIIHynG~~--KPWle~~i~~yr~lW~kYl~~~~~fl~ 633 (639)
T PLN02829 564 LITFW-KRTYPLDRSWHVLGLGYNPNVNQRDIERAAVIHYNGNM--KPWLEIGIPKYRNYWSKYVDYDQVYLR 633 (639)
T ss_pred HHHhc-CceEecChhheecCCCCCcccchhcccCCeEEEECCCC--CccccCCcccchHHHHHHHhcCchHHH
Confidence 4 5 5899999999998754432 356789999999863 545433446789999988776655554
No 15
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=99.93 E-value=1.7e-26 Score=263.49 Aligned_cols=231 Identities=23% Similarity=0.276 Sum_probs=164.6
Q ss_pred EEEEeecCcchHHHHHHHHHHHHhcCC--CCeEEEEEECCCChhHHHHHHHHHhhcCcEEEEEEecCCccc----ccccc
Q 000334 1340 NIFSIASGHLYERFLKIMILSVLKNTC--RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWL----HKQKE 1413 (1646)
Q Consensus 1340 nIf~vas~~~ye~~l~v~I~SIl~nt~--~~v~F~il~~~lS~~~k~~L~~l~~~~~~~i~~v~~~wp~~L----~~~~~ 1413 (1646)
||+. ++|.+|...+.+++.|+++|++ ..++||++.++++++.++.|......+.....+.... ...+ .....
T Consensus 1 ~i~~-~~d~~y~~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 78 (250)
T PF01501_consen 1 HIVL-ACDDNYLEGAAVLIKSLLKNNPDPSNLHIYIITDDISEEDFEKLRALAAEVIEIEPIEFPD-ISMLEEFQFNSPS 78 (250)
T ss_dssp -EEE-ECSGGGHHHHHHHHHHHHHTTTT-SSEEEEEEESSS-HHHHHHHHHHSCCCCTTECEEETS-GGHHH--TTS-HC
T ss_pred CEEE-EeCHHHHHHHHHHHHHHHHhccccccceEEEecCCCCHHHHHHHhhhcccccceeeeccch-HHhhhhhhhcccc
Confidence 5765 5789999999999999999998 5799999999999999999988765543222222211 1211 11111
Q ss_pred cccH-HHHHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhcCCCCCeeEEeeecCCCCccCCcccccccccc---cc
Q 000334 1414 KQRI-IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWK---DH 1489 (1646)
Q Consensus 1414 ~~r~-~~~y~RLfL~~LfP~~vdkVIYLDaD~Iv~~Dl~eL~~lDl~g~~~aav~d~~s~~~~~g~~fw~~gyw~---~~ 1489 (1646)
..+. ..+|.||+++.+|| ++|||||||+|+||.+||.+||+++++|+++||++++.. .+++...++. ..
T Consensus 79 ~~~~~~~~~~rl~i~~ll~-~~drilyLD~D~lv~~dl~~lf~~~~~~~~~~a~~~~~~------~~~~~~~~~~~~~~~ 151 (250)
T PF01501_consen 79 KRHFSPATFARLFIPDLLP-DYDRILYLDADTLVLGDLDELFDLDLQGKYLAAVEDESF------DNFPNKRFPFSERKQ 151 (250)
T ss_dssp CTCGGGGGGGGGGHHHHST-TSSEEEEE-TTEEESS-SHHHHC---TTSSEEEEE----------HHHHTSTTSSEEECE
T ss_pred cccccHHHHHHhhhHHHHh-hcCeEEEEcCCeeeecChhhhhcccchhhhccccccchh------hhhhhcccchhhccc
Confidence 2222 37899999999996 799999999999999999999999999999999988321 0111111111 11
Q ss_pred cCCCCeeecceeeeeHHHHHhhcHHHHHHHHHHHhccCCCCCCCCCcChHhHhhccCcccccCCcccccCCcc------C
Q 000334 1490 LRGRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVPIFSLPQEWLWCESWC------G 1563 (1646)
Q Consensus 1490 l~~~~YfNSGvlliNL~~~R~~~~~dkl~~~~q~Ls~~~~sl~~~DQDllN~v~~~~~I~~Lp~~wN~~~~~~------~ 1563 (1646)
.....||||||||+|+++||+.++.++++.+++ .+...+.+.|||++|.++. +.+..||.+||++..|+ .
T Consensus 152 ~~~~~~fNsGv~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~DQ~~ln~~~~-~~~~~L~~~~N~~~~~~~~~~~~~ 227 (250)
T PF01501_consen 152 PGNKPYFNSGVMLFNPSKWRKENILQKLIEWLE---QNGMKLGFPDQDILNIVFY-GNIKPLPCRYNCQPSWYNQSDDYF 227 (250)
T ss_dssp STTTTSEEEEEEEEEHHHHHHHHHHHHHHHHHH---HTTTT-SSCHHHHHHHHHT-TGEEEEEGGGSEEHHHHHHTHHHH
T ss_pred CcccccccCcEEEEeechhhhhhhhhhhhhhhh---hcccccCcCchHHHhhhcc-ceeEEECchhccccccccccchhh
Confidence 234799999999999999999999999999977 3445778899999999999 58999999999998877 2
Q ss_pred ccccCCCeEEEccCCCCCCChh
Q 000334 1564 NATKSKAKTIDLCNNPMTKEPK 1585 (1646)
Q Consensus 1564 ~~~~~~akiI~~~~np~tk~~k 1585 (1646)
....+.+++|||++ ..|+|+
T Consensus 228 ~~~~~~~~iiHy~g--~~KPW~ 247 (250)
T PF01501_consen 228 NPILEDAKIIHYSG--PPKPWK 247 (250)
T ss_dssp HHHGCC-SEEE--S--SS-TTS
T ss_pred HhhcCCeEEEEeCC--CCcCCC
Confidence 33467899999998 346664
No 16
>PLN02870 Probable galacturonosyltransferase
Probab=99.93 E-value=3.1e-26 Score=275.20 Aligned_cols=184 Identities=17% Similarity=0.267 Sum_probs=137.7
Q ss_pred HHHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhcCCCCCeeEEeeecCCCC------ccCCccccccccccccc-C
Q 000334 1419 WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNK------DMDGYRFWRQGFWKDHL-R 1491 (1646)
Q Consensus 1419 ~~y~RLfL~~LfP~~vdkVIYLDaD~Iv~~Dl~eL~~lDl~g~~~aav~d~~s~~------~~~g~~fw~~gyw~~~l-~ 1491 (1646)
.+|+||+||.+|| +++||||||+|+||++||++||++||+|+++|||++|.... +..++-.+.....+..+ +
T Consensus 329 lny~Rl~LPelLP-~LdKVLYLD~DVVVqgDLseLw~iDL~gkviaAVeDc~~~~~~~~~~~~~~YfNfs~p~i~~~fd~ 407 (533)
T PLN02870 329 LNHLRIYLPELFP-NLDKVVFLDDDVVIQRDLSPLWDIDLGGKVNGAVETCRGEDEWVMSKRFRNYFNFSHPLIAKNLDP 407 (533)
T ss_pred HHHHHHHHHHHhh-hcCeEEEEeCCEEecCcHHHHhhCCCCCceEEEEccccccchhhhhhhhhhhcccccchhhcccCc
Confidence 6999999999999 79999999999999999999999999999999999995310 11110000111111112 3
Q ss_pred CCCeeecceeeeeHHHHHhhcHHHHHHHHHHHhccCCCCCCCCCcChH---hHhhccCcccccCCcccccCCccC----c
Q 000334 1492 GRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLP---NYAQHTVPIFSLPQEWLWCESWCG----N 1564 (1646)
Q Consensus 1492 ~~~YfNSGvlliNL~~~R~~~~~dkl~~~~q~Ls~~~~sl~~~DQDll---N~v~~~~~I~~Lp~~wN~~~~~~~----~ 1564 (1646)
..+||||||+||||++||+.++++++..++++- ....+.+.|||+| |.+|. +.++.||++||++.--+. .
T Consensus 408 ~~cyfNSGVlLINL~~WRe~nITek~~~~l~~n--~~~~l~l~DQdaLp~~livf~-g~v~~LD~rWN~~gLgy~~~~~~ 484 (533)
T PLN02870 408 EECAWAYGMNIFDLRAWRKTNIRETYHSWLKEN--LKSNLTMWKLGTLPPALIAFK-GHVHPIDPSWHMLGLGYQSKTNI 484 (533)
T ss_pred ccceeeccchhccHHHHHHcChHHHHHHHHHhh--hhcCceecccccccHhHHHhc-CceEECChHHhcCCCCCcccccc
Confidence 579999999999999999999999999998731 1234677899999 57777 589999999998753221 2
Q ss_pred cccCCCeEEEccCCCCCCChhhHHhhhcccCCchhhHHHHHHHH
Q 000334 1565 ATKSKAKTIDLCNNPMTKEPKLQGARRIVSEWPDLDSEARQFTA 1608 (1646)
Q Consensus 1565 ~~~~~akiI~~~~np~tk~~kl~~a~r~~~~w~~~d~~~~~~~~ 1608 (1646)
+..+.|++|||+++ .|+|.-....++++.|..|.+.-..+++
T Consensus 485 ~~i~~aaIIHY~G~--~KPW~~~~~~~yr~~W~kYl~~s~~fl~ 526 (533)
T PLN02870 485 ESVKKAAVIHYNGQ--SKPWLEIGFEHLRPFWTKYVNYSNDFIR 526 (533)
T ss_pred cccCCcEEEEECCC--CCCccccCccchhHHHHHHHccCchHhh
Confidence 34578999999985 5777544555578888888665444443
No 17
>PLN02659 Probable galacturonosyltransferase
Probab=99.93 E-value=3.8e-26 Score=274.55 Aligned_cols=182 Identities=19% Similarity=0.291 Sum_probs=137.8
Q ss_pred HHHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhcCCCCCeeEEeeecCCC------CccCCc-ccccccccccccC
Q 000334 1419 WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNN------KDMDGY-RFWRQGFWKDHLR 1491 (1646)
Q Consensus 1419 ~~y~RLfL~~LfP~~vdkVIYLDaD~Iv~~Dl~eL~~lDl~g~~~aav~d~~s~------~~~~g~-~fw~~gyw~~~l~ 1491 (1646)
.+|+||+||.+|| +++||||||+|+||++||++||++||+|+++|||+||... .++... +| ......+.+.
T Consensus 330 ~nY~RL~IPeLLP-~LdKVLYLD~DVVVqgDLseLw~iDL~gkv~AAVeDc~~~d~~~~~~~~~~yL~~-s~p~i~~yFn 407 (534)
T PLN02659 330 MNHIRIHLPELFP-SLNKVVFLDDDIVVQTDLSPLWDIDMNGKVNGAVETCRGEDKFVMSKKLKSYLNF-SHPLIAKNFD 407 (534)
T ss_pred HHHHHHHHHHHhh-hcCeEEEeeCCEEEcCchHHHHhCCCCCcEEEEeeccccccchhhhHHHHHhhcc-cchhhhhccC
Confidence 7999999999999 7999999999999999999999999999999999999521 011000 00 0011112222
Q ss_pred -CCCeeecceeeeeHHHHHhhcHHHHHHHHHHHhccCC-CCCCCCCcChH---hHhhccCcccccCCcccccCCccC---
Q 000334 1492 -GRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDP-NSLANLDQDLP---NYAQHTVPIFSLPQEWLWCESWCG--- 1563 (1646)
Q Consensus 1492 -~~~YfNSGvlliNL~~~R~~~~~dkl~~~~q~Ls~~~-~sl~~~DQDll---N~v~~~~~I~~Lp~~wN~~~~~~~--- 1563 (1646)
+.+|||||||||||++||++++++++..+++. +. ..+.+.|||+| |.+|. +.++.||++||+..-.+.
T Consensus 408 ~~~cYfNsGVlLINLk~WRe~nITek~l~~l~~---n~~~~l~l~DQdaLp~~LivF~-g~v~~LD~rWN~~gLg~~~~~ 483 (534)
T PLN02659 408 PNECAWAYGMNIFDLEAWRKTNISSTYHHWLEE---NLKSDLSLWQLGTLPPGLIAFH-GHVHVIDPFWHMLGLGYQENT 483 (534)
T ss_pred ccccceecceeEeeHHHHHhcChHHHHHHHHHh---cccccccccccccchHHHHHhc-CCEEECChhheecCCcccccc
Confidence 46899999999999999999999999999873 33 34777899999 47777 689999999998653221
Q ss_pred -ccccCCCeEEEccCCCCCCChhhHHhhhcccCCchhhHHHHHHHH
Q 000334 1564 -NATKSKAKTIDLCNNPMTKEPKLQGARRIVSEWPDLDSEARQFTA 1608 (1646)
Q Consensus 1564 -~~~~~~akiI~~~~np~tk~~kl~~a~r~~~~w~~~d~~~~~~~~ 1608 (1646)
.+..+.+.+|||+++ .|+|.-..-.++++.|..|-+.-..+++
T Consensus 484 ~~~~i~~paIIHYnG~--~KPW~~~~~~~yr~~W~kYl~~s~~fl~ 527 (534)
T PLN02659 484 SLADAESAGVVHFNGR--AKPWLDIAFPQLRPLWAKYIDSSDKFIK 527 (534)
T ss_pred cccccCCcEEEEECCC--CCccccccCCcchhHHHHHhccCCHHHH
Confidence 123578999999995 5767655556688888877665444443
No 18
>PLN02769 Probable galacturonosyltransferase
Probab=99.93 E-value=5.4e-26 Score=278.00 Aligned_cols=252 Identities=18% Similarity=0.248 Sum_probs=174.6
Q ss_pred eeEEEEeecCcchHHHHHHHHHHHHhcCC--CCeEEEEEECCCChhHHHHHHHHH--hhc-CcEEEEEEe---cCCcc--
Q 000334 1338 TINIFSIASGHLYERFLKIMILSVLKNTC--RPVKFWFIKNYLSPQFKDVIPHMA--QEY-GFEYELITY---KWPTW-- 1407 (1646)
Q Consensus 1338 ~InIf~vas~~~ye~~l~v~I~SIl~nt~--~~v~F~il~~~lS~~~k~~L~~l~--~~~-~~~i~~v~~---~wp~~-- 1407 (1646)
...=++|.||+-- .+.|.|.|.+.|++ .++.|||+++..+-.-+ +.+. ..+ +..|+...+ .|...
T Consensus 329 ~l~Hy~ifSdNvl--AasvvvNStv~na~~p~~~VFHiVTD~~n~~am---~~WF~~n~~~~a~v~v~n~e~~~~~~~~~ 403 (629)
T PLN02769 329 SLRHYVIFSKNVL--AASVVINSTVVHSRESGNIVFHVLTDAQNYYAM---KHWFDRNSYKEAAVQVLNIEDLILKDLDK 403 (629)
T ss_pred ccceEEEEeccce--eeeeehhhhhhhccCccceEEEEecChhhHHHH---HHHHhcCCCccceEEEeeeeeeeecccch
Confidence 3444556666544 35678999999998 57999999988765433 2222 122 445554444 34210
Q ss_pred --cc-------------c-------ccccccH-HHHHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhcCCCCCeeE
Q 000334 1408 --LH-------------K-------QKEKQRI-IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLA 1464 (1646)
Q Consensus 1408 --L~-------------~-------~~~~~r~-~~~y~RLfL~~LfP~~vdkVIYLDaD~Iv~~Dl~eL~~lDl~g~~~a 1464 (1646)
++ . +...... ..+|.|||||.+|| +++||||||+|+||++||++||++||+|+++|
T Consensus 404 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~eyiS~~nh~RfyIPELLP-~LdKVLYLD~DVVVqgDLseLw~iDL~gkviA 482 (629)
T PLN02769 404 FALKQLSLPEEFRVSFRSVDNPSSKQMRTEYLSVFSHSHFLLPEIFK-KLKKVVVLDDDVVVQRDLSFLWNLDMGGKVNG 482 (629)
T ss_pred HHHHhhccchhhhhhhccCCCCchhccCcccccHHHHHHHHHHHHhh-hcCeEEEEeCCEEecCcHHHHhcCCCCCCeEE
Confidence 00 0 0001112 27999999999999 79999999999999999999999999999999
Q ss_pred EeeecCCCCccCCcccccccccccccCCCCeeecceeeeeHHHHHhhcHHHHHHHHHHHhcc-CCCCCCCCCcChHhHhh
Q 000334 1465 YTPFCDNNKDMDGYRFWRQGFWKDHLRGRPYHISALYVVDLKRFRETAAGDNLRVFYETLSK-DPNSLANLDQDLPNYAQ 1543 (1646)
Q Consensus 1465 av~d~~s~~~~~g~~fw~~gyw~~~l~~~~YfNSGvlliNL~~~R~~~~~dkl~~~~q~Ls~-~~~sl~~~DQDllN~v~ 1543 (1646)
||++|..+-.... .|....| +-+..||||||||||||++||+.++++++..+++.+.. +...+...+|+++|.+|
T Consensus 483 AVedc~~rl~~~~-~yl~~~~---F~~~~CyFNSGVLLINL~~WRk~nITe~~~~~~~~~~~~~~~~~~~~~Lp~lnlvF 558 (629)
T PLN02769 483 AVQFCGVRLGQLK-NYLGDTN---FDTNSCAWMSGLNVIDLDKWRELDVTETYLKLLQKFSKDGEESLRAAALPASLLTF 558 (629)
T ss_pred Eehhhhhhhhhhh-hhhcccC---CCccccccccCeeEeeHHHHHHhCHHHHHHHHHHHhhhcccccccccCcCHHHHHh
Confidence 9999963211000 1111111 12356899999999999999999999999998876543 33445556788888899
Q ss_pred ccCcccccCCcccccCCc----cCccccCCCeEEEccCCCCCCChhhHHhhhcccCCchhhHH
Q 000334 1544 HTVPIFSLPQEWLWCESW----CGNATKSKAKTIDLCNNPMTKEPKLQGARRIVSEWPDLDSE 1602 (1646)
Q Consensus 1544 ~~~~I~~Lp~~wN~~~~~----~~~~~~~~akiI~~~~np~tk~~kl~~a~r~~~~w~~~d~~ 1602 (1646)
. +.++.||++||++.-. ...+..+.++||||+++ .|+|.-..-.++.+.|+.|-+.
T Consensus 559 ~-g~v~~LD~rWNv~gLG~~~~i~~~~i~~paIIHYnG~--~KPW~e~~i~~yr~~W~kYl~~ 618 (629)
T PLN02769 559 Q-DLIYPLDDRWVLSGLGHDYGIDEQAIKKAAVLHYNGN--MKPWLELGIPKYKKYWKRFLNR 618 (629)
T ss_pred c-CeEEECCHHHccccccccccccccccCCcEEEEECCC--CCCccCCCCChHHHHHHHHhcc
Confidence 9 5899999999976321 22345678999999984 4766544445677888877543
No 19
>PLN02867 Probable galacturonosyltransferase
Probab=99.93 E-value=9.2e-26 Score=272.49 Aligned_cols=177 Identities=18% Similarity=0.284 Sum_probs=133.6
Q ss_pred HHHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhcCCCCCeeEEeee--cCCCCccCCccc---c--ccccccccc-
Q 000334 1419 WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPF--CDNNKDMDGYRF---W--RQGFWKDHL- 1490 (1646)
Q Consensus 1419 ~~y~RLfL~~LfP~~vdkVIYLDaD~Iv~~Dl~eL~~lDl~g~~~aav~d--~~s~~~~~g~~f---w--~~gyw~~~l- 1490 (1646)
.+|+||+||.+|| +++||||||+|+||++||++||++||+|+++|||.| |.... ..+.++ - ...+-...+
T Consensus 331 lnYlRflIPeLLP-~LdKVLYLD~DVVVqgDLseLwdiDL~gkviaAV~D~~c~~~~-~~~~~~~~YlNfsnp~i~~~~~ 408 (535)
T PLN02867 331 LNHLRIYIPELFP-DLNKIVFLDDDVVVQHDLSSLWELDLNGKVVGAVVDSWCGDNC-CPGRKYKDYLNFSHPLISSNLD 408 (535)
T ss_pred HHHHHHHHHHHhh-ccCeEEEecCCEEEcCchHHHHhCcCCCCeEEEEecccccccc-ccchhhhhhccccchhhhccCC
Confidence 6999999999999 799999999999999999999999999999999976 43210 111111 0 001101111
Q ss_pred CCCCeeecceeeeeHHHHHhhcHHHHHHHHHHHhccCC-CCCCCCCcChHhH---hhccCcccccCCcccccCCc-----
Q 000334 1491 RGRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDP-NSLANLDQDLPNY---AQHTVPIFSLPQEWLWCESW----- 1561 (1646)
Q Consensus 1491 ~~~~YfNSGvlliNL~~~R~~~~~dkl~~~~q~Ls~~~-~sl~~~DQDllN~---v~~~~~I~~Lp~~wN~~~~~----- 1561 (1646)
+..+|||||||||||++||++++++++..+++. +. ..+...|||.||. +|. +.++.||++||++.-.
T Consensus 409 p~~cYFNSGVmLINL~~WRe~nITek~~~~Le~---n~~~~~~l~dqd~LN~~LlvF~-g~v~~LD~rWNv~gLgy~~~~ 484 (535)
T PLN02867 409 QERCAWLYGMNVFDLKAWRRTNITEAYHKWLKL---SLNSGLQLWQPGALPPALLAFK-GHVHPIDPSWHVAGLGSRPPE 484 (535)
T ss_pred CCCcceecceeeeeHHHHHHhcHHHHHHHHHHh---chhcccccccccccchHHHHhc-CcEEECChhhcccCCCccccc
Confidence 347899999999999999999999999998873 22 2345679999996 677 5899999999986421
Q ss_pred cCccccCCCeEEEccCCCCCCChhhHHhhhcccCCchhhHHH
Q 000334 1562 CGNATKSKAKTIDLCNNPMTKEPKLQGARRIVSEWPDLDSEA 1603 (1646)
Q Consensus 1562 ~~~~~~~~akiI~~~~np~tk~~kl~~a~r~~~~w~~~d~~~ 1603 (1646)
...+..+.++||||+++ .|+|+-....++++.|..|-+--
T Consensus 485 ~~~~~i~~paIIHYnG~--~KPW~e~~~~~yR~~W~kyl~~~ 524 (535)
T PLN02867 485 VPREILESAAVLHFSGP--AKPWLEIGFPEVRSLWYRHVNFS 524 (535)
T ss_pred chhhhcCCcEEEEECCC--CCcccccCCCchhHHHHHhcCcc
Confidence 12233578999999984 58777767778889998665433
No 20
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=99.92 E-value=8.3e-25 Score=264.77 Aligned_cols=252 Identities=16% Similarity=0.240 Sum_probs=170.2
Q ss_pred eEEEEeecCcchHHHHHHHHHHHHhcCCC--CeEEEEEECCCChhHHHHHHHHHhhcCcEEEEEEe---cCCc-----cc
Q 000334 1339 INIFSIASGHLYERFLKIMILSVLKNTCR--PVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITY---KWPT-----WL 1408 (1646)
Q Consensus 1339 InIf~vas~~~ye~~l~v~I~SIl~nt~~--~v~F~il~~~lS~~~k~~L~~l~~~~~~~i~~v~~---~wp~-----~L 1408 (1646)
.+=++|.+|+-. .+.|.+.|-+.|.+. ++.|||++|.++---+..--.+..--+..|+...+ +|-. .+
T Consensus 345 l~Hy~ifSDNVL--AaSVVVnSTv~na~~P~k~VFHiVTD~~ny~aM~~WF~~n~~~~A~V~V~nie~f~wln~~~~pvl 422 (657)
T PLN02910 345 LYHYAIFSDNVL--ATSVVVNSTVLHAKEPQKHVFHIVTDKLNFAAMKMWFIINPPAKATIQVENIDDFKWLNSSYCSVL 422 (657)
T ss_pred ceeEEEEeccee--eEEeehhhhhhcccCccceEEEEecCccccHHHHHHHhhCCCccceEEEeehhhcccccccccHHH
Confidence 444455566433 245678888888774 58899998877644332111111112455655554 2311 01
Q ss_pred cc---c--------------------ccccc----H-HHHHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhcCCCC
Q 000334 1409 HK---Q--------------------KEKQR----I-IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKG 1460 (1646)
Q Consensus 1409 ~~---~--------------------~~~~r----~-~~~y~RLfL~~LfP~~vdkVIYLDaD~Iv~~Dl~eL~~lDl~g 1460 (1646)
+. . ..+.| . +.+|+||+||.+|| +++||||||+|+||++||++||++||+|
T Consensus 423 ~qles~~~~~~yf~~~~~~~~~~~~~~~k~r~p~ylS~lnY~Rf~LPelLp-~l~KVLYLD~DVVV~gDLseLw~iDL~g 501 (657)
T PLN02910 423 RQLESARIKEYYFKANHPSSLSAGADNLKYRNPKYLSMLNHLRFYLPEVYP-KLEKILFLDDDIVVQKDLTPLWSIDMQG 501 (657)
T ss_pred HHHhhhhhhhhhhhccccccccccccccccCCcchhhHHHHHHHHHHHHhh-hcCeEEEEeCCEEecCchHHHHhCCcCC
Confidence 10 0 00111 2 27899999999999 6999999999999999999999999999
Q ss_pred CeeEEeeecCCC-CccCCcccccccccccccC-CCCeeecceeeeeHHHHHhhcHHHHHHHHHHHhccCCCCCCCCCcCh
Q 000334 1461 RPLAYTPFCDNN-KDMDGYRFWRQGFWKDHLR-GRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDL 1538 (1646)
Q Consensus 1461 ~~~aav~d~~s~-~~~~g~~fw~~gyw~~~l~-~~~YfNSGvlliNL~~~R~~~~~dkl~~~~q~Ls~~~~sl~~~DQDl 1538 (1646)
+++|||++|... .+.....+|.....++.+. ..||||+|||||||++||+.++++ +..+++++ .......||+.
T Consensus 502 ~v~AAVedc~~~f~r~~~ylnfs~P~i~~yFNs~aCyfNsGVmVIDL~~WRe~nITe-~ye~w~el---n~~~~L~dqgs 577 (657)
T PLN02910 502 MVNGAVETCKESFHRFDKYLNFSNPKISENFDPNACGWAFGMNMFDLKEWRKRNITG-IYHYWQDL---NEDRTLWKLGS 577 (657)
T ss_pred ceEEEecccchhhhhhhhhhccCChhhhhccCCCCceeecccEEEeHHHHHHhhHHH-HHHHHHHh---cccccccccCC
Confidence 999999999742 1111112222211122333 469999999999999999999999 55566644 23456679999
Q ss_pred Hh---HhhccCcccccCCcccccCCccC----ccccCCCeEEEccCCCCCCChhhHHh-hhcccCCchhhH
Q 000334 1539 PN---YAQHTVPIFSLPQEWLWCESWCG----NATKSKAKTIDLCNNPMTKEPKLQGA-RRIVSEWPDLDS 1601 (1646)
Q Consensus 1539 lN---~v~~~~~I~~Lp~~wN~~~~~~~----~~~~~~akiI~~~~np~tk~~kl~~a-~r~~~~w~~~d~ 1601 (1646)
|| .+|. +.+++||++||.+.-.++ .+..+.|.+|||+++. | ||++.+ .++++.|..|-+
T Consensus 578 LPpgLLvF~-g~i~pLD~rWNv~GLGyd~~v~~~~i~~AAVLHynG~~--K-PWl~l~i~~Yr~~W~kYl~ 644 (657)
T PLN02910 578 LPPGLITFY-NLTYPLDRSWHVLGLGYDPALNQTEIENAAVVHYNGNY--K-PWLDLAIAKYKPYWSRYVQ 644 (657)
T ss_pred CChHHHHHh-CceeecCchheecCCCCCcccccccccCcEEEEeCCCC--C-cccccCcccchHHHHHHcc
Confidence 99 5777 589999999999864332 3457889999999864 5 555554 578888887644
No 21
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=99.83 E-value=4e-20 Score=211.94 Aligned_cols=203 Identities=18% Similarity=0.192 Sum_probs=148.6
Q ss_pred EEEeecCcchHHHHHHHHHHHHhcCCCCeEEEEEE-CCCChhHHHHHHHHHhhcCcEEEEEE-ecCCcccccccccccHH
Q 000334 1341 IFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIK-NYLSPQFKDVIPHMAQEYGFEYELIT-YKWPTWLHKQKEKQRII 1418 (1646)
Q Consensus 1341 If~vas~~~ye~~l~v~I~SIl~nt~~~v~F~il~-~~lS~~~k~~L~~l~~~~~~~i~~v~-~~wp~~L~~~~~~~r~~ 1418 (1646)
-++++++++|..++.+++.||++|++ .++++++. +++|++.++.|+++ +..+..+. ++++..... ....+..
T Consensus 3 y~t~~~~~~Y~~~a~vl~~SL~~~~~-~~~~~vl~~~~is~~~~~~L~~~----~~~~~~v~~i~~~~~~~~-~~~~~~~ 76 (240)
T cd02537 3 YVTLLTNDDYLPGALVLGYSLRKVGS-SYDLVVLVTPGVSEESREALEEV----GWIVREVEPIDPPDSANL-LKRPRFK 76 (240)
T ss_pred EEEEecChhHHHHHHHHHHHHHhcCC-CCCEEEEECCCCCHHHHHHHHHc----CCEEEecCccCCcchhhh-ccchHHH
Confidence 35677899999999999999999976 46777776 57999999888875 33332222 232221110 0112233
Q ss_pred HHHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhcCCCCCeeEEeeecCCCCccCCcccccccccccccCCCCeeec
Q 000334 1419 WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLRGRPYHIS 1498 (1646)
Q Consensus 1419 ~~y~RLfL~~LfP~~vdkVIYLDaD~Iv~~Dl~eL~~lDl~g~~~aav~d~~s~~~~~g~~fw~~gyw~~~l~~~~YfNS 1498 (1646)
.+|.||+++.+. +++||||||+|++|.+||.+||++ +..+||++++. | ..||||
T Consensus 77 ~~~~kl~~~~l~--~~drvlylD~D~~v~~~i~~Lf~~---~~~~~a~~d~~----------~-----------~~~fNs 130 (240)
T cd02537 77 DTYTKLRLWNLT--EYDKVVFLDADTLVLRNIDELFDL---PGEFAAAPDCG----------W-----------PDLFNS 130 (240)
T ss_pred HHhHHHHhcccc--ccceEEEEeCCeeEccCHHHHhCC---CCceeeecccC----------c-----------cccccc
Confidence 789999999975 599999999999999999999998 56788887642 1 259999
Q ss_pred ceeeeeHHHHHhhcHHHHHHHHHHHhccCCCCCCCCCcChHhHhhccCc--ccccCCcccccCCccCc-----cccCCCe
Q 000334 1499 ALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVP--IFSLPQEWLWCESWCGN-----ATKSKAK 1571 (1646)
Q Consensus 1499 GvlliNL~~~R~~~~~dkl~~~~q~Ls~~~~sl~~~DQDllN~v~~~~~--I~~Lp~~wN~~~~~~~~-----~~~~~ak 1571 (1646)
|||++|+.. ...+++++.++ ... ++...|||+||.++.+ . +..||++||++..++.. .....++
T Consensus 131 Gv~l~~~~~----~~~~~~~~~~~---~~~-~~~~~DQdiLN~~~~~-~~~~~~l~~~yN~~~~~~~~~~~~~~~~~~~~ 201 (240)
T cd02537 131 GVFVLKPSE----ETFNDLLDALQ---DTP-SFDGGDQGLLNSYFSD-RGIWKRLPFTYNALKPLRYLHPEALWFGDEIK 201 (240)
T ss_pred eEEEEcCCH----HHHHHHHHHHh---ccC-CCCCCCHHHHHHHHcC-CCCEeECCcceeeehhhhccCchhhcccCCcE
Confidence 999999853 45666776665 233 3677899999999985 5 99999999998654321 2245789
Q ss_pred EEEccCCCCCCChhh
Q 000334 1572 TIDLCNNPMTKEPKL 1586 (1646)
Q Consensus 1572 iI~~~~np~tk~~kl 1586 (1646)
+|||++. .|+|+-
T Consensus 202 iiHf~g~--~KPW~~ 214 (240)
T cd02537 202 VVHFIGG--DKPWSW 214 (240)
T ss_pred EEEEeCC--CCCCCC
Confidence 9999974 366653
No 22
>PLN00176 galactinol synthase
Probab=99.83 E-value=5.3e-20 Score=216.56 Aligned_cols=243 Identities=15% Similarity=0.170 Sum_probs=157.0
Q ss_pred ecCcchHHHHHHHHHHHHhcCCCCeEEEEE-ECCCChhHHHHHHHHHhhcCcEEEEEEecCCcccccccc--cccHHHHH
Q 000334 1345 ASGHLYERFLKIMILSVLKNTCRPVKFWFI-KNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKE--KQRIIWAY 1421 (1646)
Q Consensus 1345 as~~~ye~~l~v~I~SIl~nt~~~v~F~il-~~~lS~~~k~~L~~l~~~~~~~i~~v~~~wp~~L~~~~~--~~r~~~~y 1421 (1646)
++++.|...+.++..||.++ ++...+.++ .++++++.++.|.. .|..|.-++.--|. ..+.. ..+...+|
T Consensus 30 ~~n~~Y~~Ga~vL~~SLr~~-~s~~~lVvlVt~dVp~e~r~~L~~----~g~~V~~V~~i~~~--~~~~~~~~~~~~i~~ 102 (333)
T PLN00176 30 AGNGDYVKGVVGLAKGLRKV-KSAYPLVVAVLPDVPEEHRRILVS----QGCIVREIEPVYPP--ENQTQFAMAYYVINY 102 (333)
T ss_pred ecCcchHHHHHHHHHHHHHh-CCCCCEEEEECCCCCHHHHHHHHH----cCCEEEEecccCCc--ccccccccchhhhhh
Confidence 56789999999999999876 445665554 48899988777653 35555433321121 11111 11222467
Q ss_pred HHHhhcccCCCCCCeEEEEeCceeeccCchHHHhcCCCCCeeEEeeecCCCCcc-CCcccccccccc---------cccC
Q 000334 1422 KILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDM-DGYRFWRQGFWK---------DHLR 1491 (1646)
Q Consensus 1422 ~RLfL~~LfP~~vdkVIYLDaD~Iv~~Dl~eL~~lDl~g~~~aav~d~~s~~~~-~g~~fw~~gyw~---------~~l~ 1491 (1646)
-||++..+. +++||||||+|+||.++|.|||+++. | .+|||.+|...+.. ...+||- ||.. ..++
T Consensus 103 tKl~iw~l~--~ydkvlyLDaD~lv~~nid~Lf~~~~-~-~~aAV~dc~~~~~~~~~p~~~~-~~c~~~~~~~~wp~~~g 177 (333)
T PLN00176 103 SKLRIWEFV--EYSKMIYLDGDIQVFENIDHLFDLPD-G-YFYAVMDCFCEKTWSHTPQYKI-GYCQQCPDKVTWPAELG 177 (333)
T ss_pred hhhhhcccc--ccceEEEecCCEEeecChHHHhcCCC-c-ceEEEecccccccccccccccc-cccccchhhccchhhcc
Confidence 799999876 69999999999999999999999853 3 68999997532110 0012221 2221 1121
Q ss_pred --CCCeeecceeeeeHHHHHhhcHHHHHHHHHHHhccCCCCCCCCCcChHhHhhccCcccccCCcccccCC--ccCcc--
Q 000334 1492 --GRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVPIFSLPQEWLWCES--WCGNA-- 1565 (1646)
Q Consensus 1492 --~~~YfNSGvlliNL~~~R~~~~~dkl~~~~q~Ls~~~~sl~~~DQDllN~v~~~~~I~~Lp~~wN~~~~--~~~~~-- 1565 (1646)
...||||||||+|++.|+...+. ++++ ..+ ...++|||+||.+|.+ .+..||.+||++.. |...+
T Consensus 178 ~~~~~yFNSGVlvinps~~~~~~ll----~~l~---~~~-~~~f~DQD~LN~~F~~-~~~~Lp~~YN~~~~~~~~~~~~~ 248 (333)
T PLN00176 178 PPPPLYFNAGMFVFEPSLSTYEDLL----ETLK---ITP-PTPFAEQDFLNMFFRD-IYKPIPPVYNLVLAMLWRHPENV 248 (333)
T ss_pred CCCCCeEEeEEEEEEcCHHHHHHHH----HHHH---hcC-CCCCCCHHHHHHHHcC-cEEECCchhcCchhhhhhChhhc
Confidence 24699999999999999976544 4443 222 3567999999999995 78889999999853 32221
Q ss_pred ccCCCeEEEccCCCCCCChhhH---------HhhhcccCCc-hhhHHHHHHHHH
Q 000334 1566 TKSKAKTIDLCNNPMTKEPKLQ---------GARRIVSEWP-DLDSEARQFTAK 1609 (1646)
Q Consensus 1566 ~~~~akiI~~~~np~tk~~kl~---------~a~r~~~~w~-~~d~~~~~~~~~ 1609 (1646)
..+..++||||..+ .|+|+.. .-+.+...|| -|+++...+...
T Consensus 249 ~~~~vkIIHY~~~~-~KPW~~~~~~~~~~~~~~~~~~~~Ww~~~~~~~~~~~~~ 301 (333)
T PLN00176 249 ELDKVKVVHYCAAG-SKPWRYTGKEENMDREDIKMLVKKWWDIYNDESLDYKNF 301 (333)
T ss_pred ccCCcEEEEeeCCC-CCCCCCCCcccCCChHHHHHHHHHHHHHhcccccccccc
Confidence 13578999999521 3444321 1233455555 666666554433
No 23
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases.
Probab=99.64 E-value=1.7e-15 Score=175.15 Aligned_cols=207 Identities=16% Similarity=0.162 Sum_probs=146.8
Q ss_pred EeecCcchHHHHHHHHHHHHhcCCCCeEEEEEE-CCCChhHHHHHHH---HHhhcCcEEEEEEecCCcccccccccccHH
Q 000334 1343 SIASGHLYERFLKIMILSVLKNTCRPVKFWFIK-NYLSPQFKDVIPH---MAQEYGFEYELITYKWPTWLHKQKEKQRII 1418 (1646)
Q Consensus 1343 ~vas~~~ye~~l~v~I~SIl~nt~~~v~F~il~-~~lS~~~k~~L~~---l~~~~~~~i~~v~~~wp~~L~~~~~~~r~~ 1418 (1646)
+.+++..|...+.++..|+-++.. ..+..++. +.++......+.. ....++..+..+...-+ +. ...+..
T Consensus 5 tl~Tn~~YL~gAlvL~~sLr~~gs-~~dlVvLvt~~~~~~~~~~~~~~~~~l~~~~~~v~~v~~~~~----~~-~~~~~~ 78 (278)
T cd06914 5 NYATNADYLCNALILFEQLRRLGS-KAKLVLLVPETLLDRNLDDFVRRDLLLARDKVIVKLIPVIIA----SG-GDAYWA 78 (278)
T ss_pred EEecChhHHHHHHHHHHHHHHhCC-CCCEEEEECCCCChhhhhhHHHHHHHhhccCcEEEEcCcccC----CC-CCccHH
Confidence 345688999888888888876544 66666665 6666544332211 12445666555543211 11 122333
Q ss_pred HHHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhcCCCCCeeEEeeecCCCCccCCcccccccccccccCCCCeeec
Q 000334 1419 WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLRGRPYHIS 1498 (1646)
Q Consensus 1419 ~~y~RLfL~~LfP~~vdkVIYLDaD~Iv~~Dl~eL~~lDl~g~~~aav~d~~s~~~~~g~~fw~~gyw~~~l~~~~YfNS 1498 (1646)
.+|.||.+..+ + +++||||||+|++|.++|.|||+++.. ..+||+ + .|| ||||
T Consensus 79 ~~~tKl~~~~l-~-~y~kvlyLDaD~l~~~~ideLf~~~~~-~~~Aap-~---------------~~~--------~FNS 131 (278)
T cd06914 79 KSLTKLRAFNQ-T-EYDRIIYFDSDSIIRHPMDELFFLPNY-IKFAAP-R---------------AYW--------KFAS 131 (278)
T ss_pred HHHHHHHhccc-c-ceeeEEEecCChhhhcChHHHhcCCcc-cceeee-c---------------Ccc--------eecc
Confidence 57999999998 3 699999999999999999999999843 345554 2 133 9999
Q ss_pred ceeeeeHHHHHhhcHHHHHHHHHHHhccCCCCCCCCCcChHhHhhccCc-------ccccCCc-ccccC-----------
Q 000334 1499 ALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVP-------IFSLPQE-WLWCE----------- 1559 (1646)
Q Consensus 1499 GvlliNL~~~R~~~~~dkl~~~~q~Ls~~~~sl~~~DQDllN~v~~~~~-------I~~Lp~~-wN~~~----------- 1559 (1646)
||||||++.|+..++.+++..... .. ....|||+||.++.+ . +..||.+ ||...
T Consensus 132 Gvmvi~ps~~~~~~l~~~~~~~~~---~~---~~~~DQdiLN~~~~~-~~~~~~~~~~~Lp~~~y~llt~~~r~~~~~~~ 204 (278)
T cd06914 132 HLMVIKPSKEAFKELMTEILPAYL---NK---KNEYDMDLINEEFYN-SKQLFKPSVLVLPHRQYGLLTGEFREKLHKSF 204 (278)
T ss_pred eeEEEeCCHHHHHHHHHHHHHhcc---cC---CCCCChHHHHHHHhC-CccccCcceEEcCccccccCChhhcccCHHHh
Confidence 999999999999999888887754 11 245799999999995 5 8889997 88653
Q ss_pred ---------CccCccccCCCeEEEccCCCCCCChhhHHh
Q 000334 1560 ---------SWCGNATKSKAKTIDLCNNPMTKEPKLQGA 1589 (1646)
Q Consensus 1560 ---------~~~~~~~~~~akiI~~~~np~tk~~kl~~a 1589 (1646)
.|-.++..+++|+|||..-|+-|+|.....
T Consensus 205 l~~~~~~~~~w~~~~~~~~~k~vHFSd~Pl~KPW~~~~~ 243 (278)
T cd06914 205 LSNAQHLYEKWDPDDVFKESKVIHFSDSPLPKPWNYNNL 243 (278)
T ss_pred hccccccccccCHHHHHhhCeEEEecCCCCCCCcCCcCH
Confidence 233334457899999999998888865543
No 24
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=96.97 E-value=0.02 Score=66.08 Aligned_cols=224 Identities=17% Similarity=0.120 Sum_probs=122.6
Q ss_pred cCceeEEEEeecCcchHHHHHHHHHHHHhc--CCCCeEEEEEECCCChhHHHHHHHHHhhcCcEEEEEEecCCccccccc
Q 000334 1335 HGKTINIFSIASGHLYERFLKIMILSVLKN--TCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQK 1412 (1646)
Q Consensus 1335 ~~~~InIf~vas~~~ye~~l~v~I~SIl~n--t~~~v~F~il~~~lS~~~k~~L~~l~~~~~~~i~~v~~~wp~~L~~~~ 1412 (1646)
.+-+|-|.++|.| .|..++.-.+.|.=+| ...++++||++|.-+. ++.+.-..+-++..+.+. +..+-|-
T Consensus 32 ~n~tIgl~vfatG-kY~~f~~~F~~SAEk~Fm~g~~v~YyVFTD~~~~-----~p~v~lg~~r~~~V~~v~--~~~~W~~ 103 (271)
T cd02515 32 QNITIGLTVFAVG-KYTEFLERFLESAEKHFMVGYRVIYYIFTDKPAA-----VPEVELGPGRRLTVLKIA--EESRWQD 103 (271)
T ss_pred cCCEEEEEEEEec-cHHHHHHHHHHHHHHhccCCCeeEEEEEeCCccc-----CcccccCCCceeEEEEec--cccCCcH
Confidence 4567889888877 8988999999999887 3357999999975332 222222224455555552 1111111
Q ss_pred ccccHHHHHHHHhhcccCCCCCCeEEEEeCceeeccCch-HHHhcCCCCCeeEEeeecCCCCccCCccccccccccccc-
Q 000334 1413 EKQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMG-ELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHL- 1490 (1646)
Q Consensus 1413 ~~~r~~~~y~RLfL~~LfP~~vdkVIYLDaD~Iv~~Dl~-eL~~lDl~g~~~aav~d~~s~~~~~g~~fw~~gyw~~~l- 1490 (1646)
..-+++.++.......++ .++|-+.++|+|+++.+.+. |.. |..+|...-.-..+....+.|-+..--..+.
T Consensus 104 ~sl~Rm~~~~~~~~~~~~-~e~DYlF~~dvd~~F~~~ig~E~L-----g~lva~lHp~~y~~~~~~fpYERrp~S~AyIp 177 (271)
T cd02515 104 ISMRRMKTLADHIADRIG-HEVDYLFCMDVDMVFQGPFGVETL-----GDSVAQLHPWWYGKPRKQFPYERRPSSAAYIP 177 (271)
T ss_pred HHHHHHHHHHHHHHHhhc-ccCCEEEEeeCCceEeecCCHHHh-----hhhheecChhhhcCCCCCCCCcCCCCcccccc
Confidence 112222333333333344 57999999999999998876 332 1233332110000001111111111000111
Q ss_pred --CCCCeeecceeeeeHHHHHhhcHHHHHHHHHHH-hccCCCCCCCCCcChHhHhhccC-cccccCCcccccCCccCccc
Q 000334 1491 --RGRPYHISALYVVDLKRFRETAAGDNLRVFYET-LSKDPNSLANLDQDLPNYAQHTV-PIFSLPQEWLWCESWCGNAT 1566 (1646)
Q Consensus 1491 --~~~~YfNSGvlliNL~~~R~~~~~dkl~~~~q~-Ls~~~~sl~~~DQDllN~v~~~~-~I~~Lp~~wN~~~~~~~~~~ 1566 (1646)
.|..|+-.|++==-.+++.+. ++.|...+.. +.++. .-.+.|..-||-.+... |++-|+++|+|.+.+.....
T Consensus 178 ~~eGdfYy~Ga~~GG~~~~vl~l--~~~c~~~i~~D~~n~I-~A~wHDESHLNkYf~~~Kp~KiLSPeY~w~e~~~~p~~ 254 (271)
T cd02515 178 EGEGDFYYHGAVFGGSVEEVYRL--TRACHEGILADKANGI-EARWHDESHLNKYFLLHKPTKVLSPEYLWDDRIGQAAE 254 (271)
T ss_pred CCCCCeEEeeeecCccHHHHHHH--HHHHHHHHHHHHhCCc-eEEeecHhHhHHHHhhCCCCeecChhhcCCccCCCCcc
Confidence 256788888774444444332 2334433331 11122 22578999999777544 48999999999987554444
Q ss_pred cCCCeEEEc
Q 000334 1567 KSKAKTIDL 1575 (1646)
Q Consensus 1567 ~~~akiI~~ 1575 (1646)
.+..+++..
T Consensus 255 ~k~~r~~~~ 263 (271)
T cd02515 255 IRLPRLSWL 263 (271)
T ss_pred cceeEEEEe
Confidence 555555554
No 25
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism]
Probab=96.86 E-value=0.54 Score=63.55 Aligned_cols=377 Identities=17% Similarity=0.146 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHhCCCCCCccEEEcceeccCchH---HHHHHHHHHHHHHHHHHHccccCChhhHHHHH-HhcccCCccC
Q 000334 680 DQSQESSMFVFKLGLTKLKCCLLMNGLVSESSEE---ALLNAMNDELQRIQEQVYYGNINSYTDVLEKV-LSESGINRYN 755 (1646)
Q Consensus 680 ~~~~~~~~~~~rlgi~~~~p~vlvNG~~~~~~~~---~l~~~i~~~~~~lq~~v~~g~l~d~~~~~~~~-l~~~~~~r~n 755 (1646)
.-+++-++.+++.|+...-...+|||...+.+.- .|+..+++|.+.+-+-...| .+...+...+ +.-+.... -
T Consensus 339 ~ei~~nq~~~~~~~v~~g~~~L~INGl~~di~~~DlfsLld~lk~E~~~~~~f~~lg--i~~~~l~~~l~l~~~~~~~-~ 415 (1470)
T KOG1879|consen 339 TEIEENQSKLEAKGVPPGDNALFINGLNLDIDSLDLFSLLDLLKQEKKMLNGFHNLG--IDGEFLSKLLKLDLSKSEK-Q 415 (1470)
T ss_pred HHHHHhhhhhhhcCCCCCcceeEecccccCcccccHHHHHHHHHHHHHHHHHHHhcC--CchhHHHHhhccccCcccc-c
Confidence 3445556666777886656789999988877663 77888999888887666655 2333333222 11111101 0
Q ss_pred ceeccCCCCCCeEeecccccccchhHhhcCccccCCCCCCCCc----c-eEEEEEeeCCCHHHHHHHHHHHHHHhcCCCc
Q 000334 756 PQIITDAKVKPKFISLASSFLGRETELKDINYLHSPETVDDVK----P-VTHLLAVDVTSKKGMKLLHEGIRFLIGGSNG 830 (1646)
Q Consensus 756 ~~i~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~t~~lv~Df~s~~g~~~l~~al~~~~~~~~~ 830 (1646)
+.-+.-....+.|++..........+-+++.-+-.+.-..... + -++.+|.|..++.++..+..+..+. .....
T Consensus 416 ~~~~Dir~~~v~~vNdlEsD~~Y~~w~~Svq~lL~P~~PG~lr~IrkNl~nlV~vIDpa~~~~~~~l~~~~~f~-s~~~P 494 (1470)
T KOG1879|consen 416 EYAVDIRSEAVIWVNDLESDPQYDRWPSSVQLLLKPTFPGQLRPIRKNLFNLVFVIDPATPEDLEFLKTARNFV-SHQIP 494 (1470)
T ss_pred ceeeecccccceeecccccchhhcchhHHHHHHhCCCCCCcchHHHhhheeEEEEecCCCccchHHHHHHHHHh-cCCCc
Confidence 0000000112344443332111122222222221111111111 2 3455788999999999998888776 44578
Q ss_pred eEEEEEEcCCCCCCCchhHHHHHHHHhhhccchh---hHHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHhhc
Q 000334 831 ARLGVLFSASREADLPSIIFVKAFEITASTYSHK---KKVLEFLDQLCSFYERTYLLASSATADSTQAFIDKVCEFAEAN 907 (1646)
Q Consensus 831 ~Rv~~i~n~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 907 (1646)
+|+|+|.-..+...+....+..++..++...+.. ..+..+|.++-.....+ ...+.+..+.+ . .+
T Consensus 495 ~R~G~v~~~nd~~~d~~~d~g~av~~af~yi~~~~d~~~Alk~l~~~~~~~~~~--------~~~~~e~v~~~---~-~~ 562 (1470)
T KOG1879|consen 495 VRIGFVFIANDDDEDGVTDLGVAVLRAFNYISEESDNLTALKFLTNIYSDVRSD--------EYVLVEHVKGV---F-EN 562 (1470)
T ss_pred eEEEEEEEecCCcccchhhHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhccc--------chhHHHhhhHH---H-Hh
Confidence 9999998655433322334445555555544433 33344444442211100 00010110111 0 01
Q ss_pred CCChHHHhhhcCccchhhhHHHHHH-HHHHHHHHhCCCCCCcEEEEcCEEecCCCCCCCCHhhHHHHHHHHHHhhhHHHH
Q 000334 908 GLSSKVYRASLPEYSKGKVRKQLNK-VVQFLHRQLGVESGANAVITNGRVTFPIDESTFLSHDLSLLESVEFKHRIKHIW 986 (1646)
Q Consensus 908 ~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~g~~~vv~NGR~i~~~~~~~f~~~Df~~L~~~e~~~~~~~v~ 986 (1646)
.++......-| ..+...+.-.+ ...|+. .+|+.+ .+-+++||++++.++. ..+. +..+.-+....+..|.
T Consensus 563 ~~~~~~~~~il---~~~s~~d~~~~~~~~fv~-~lGl~~-~p~vL~NG~i~~~~~~---~~~~-e~~i~~~i~~~t~~iQ 633 (1470)
T KOG1879|consen 563 TLPNAKKDDIL---GIDSTYDEGRKAGFSFVQ-ELGLDS-LPSVLLNGEIFDHESN---AWDL-EESILQEIMKDTPFIQ 633 (1470)
T ss_pred hccccchhhhh---ccccchhhcchHHHHHHH-HhCCCc-cCeeeECCeecccccc---ccch-HHHHHHHHHhhhHHHH
Confidence 11100000000 01111112223 344444 569988 7899999999987542 2222 4444444444455555
Q ss_pred HHHHHhcccCCCCCCCcccccchhhhhhhhhhhc-ccccccCCcc----ccccc-ccc-------cceeeEEe-CC---C
Q 000334 987 EIIEEVNWQETYPDIDPDMLTSKFVSDIILFVTS-SMAMRDRSSE----SARFE-ILS-------AEYSAVVF-NS---E 1049 (1646)
Q Consensus 987 ~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~----~~~~~-~~~-------~~~s~~~~-~~---~ 1049 (1646)
.++-.=.+.+. ....+..|-..+ ..-.++++.. -.++. +++ ..+....+ ++ .
T Consensus 634 ~av~~G~l~d~-----------~~~~d~ll~~~~v~~R~N~~i~~~~~~~~~v~s~l~~~~k~~~~~~~~~Yl~~~~~~~ 702 (1470)
T KOG1879|consen 634 RAVYEGKLEDD-----------QNVVDFLLEQKSVLPRINKRILSGSKFLDSVVSILSSTDKSAVLLKNVNYLTKKTEES 702 (1470)
T ss_pred HHHHcCCCccc-----------hHHHHHHHhCccccccccccccccccchhhHHhhhcchhhhhHHHhhccccccCchhh
Confidence 44432211110 011111111111 0000000000 00000 000 00111111 22 1
Q ss_pred CceEEEEEEecCCCcchhhHHH-HHHHHhccCCCeEEEEEccCC
Q 000334 1050 NSTIHIDAVIDPLSPTGQKLSS-LLRVLQRYAQPSMRIVLNPMS 1092 (1646)
Q Consensus 1050 ~~~~~v~ailDPlse~aQk~~~-ll~~l~~~~~v~i~i~LnP~~ 1092 (1646)
..++.+.+|=|=-+..+-|++. .++.+..-.+++|-++-||..
T Consensus 703 ~~~vT~wlvaDf~~~~grklL~~al~~~~~s~~~Ri~~I~np~s 746 (1470)
T KOG1879|consen 703 NLPVTIWLVADFESPSGRKLLTNALDYLKSSKNARIGLIPNPSS 746 (1470)
T ss_pred ccceEEEEEcccCChhHHHHHHHHHHHHhccccceEEEecCchh
Confidence 3468888898988888877665 567777766666667778865
No 26
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=96.52 E-value=0.0014 Score=75.45 Aligned_cols=135 Identities=19% Similarity=0.167 Sum_probs=76.7
Q ss_pred HHHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhcCCCCCeeEEeeecC-C---CCccCCcccc-------------
Q 000334 1419 WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCD-N---NKDMDGYRFW------------- 1481 (1646)
Q Consensus 1419 ~~y~RLfL~~LfP~~vdkVIYLDaD~Iv~~Dl~eL~~lDl~g~~~aav~d~~-s---~~~~~g~~fw------------- 1481 (1646)
..+.+|-+=..- +.|||||||+|.||+.++.+||+... +-+++.||.. + +.+-..--||
T Consensus 155 ~mftKLrVfeqt--EyDRvifLDsDaivlknmDklFd~Pv--yef~a~pD~~~sp~~fhrp~~~i~~~ft~~faayg~~r 230 (368)
T COG5597 155 DMFTKLRVFEQT--EYDRVIFLDSDAIVLKNMDKLFDYPV--YEFAAAPDVYESPADFHRPNSGIFVSFTPAFAAYGKMR 230 (368)
T ss_pred HHhHHHHhhhhh--hhceEEEeccchHHhhhhHHHhcchh--hhhccCCchhhCHHHhcCCCCccceeecHHHHhhcccH
Confidence 455555554443 69999999999999999999998763 3456666521 1 1111111122
Q ss_pred ----------c---ccccccccCC-CCeeecceeeeeHHHHHhhcHHHHHHHHHHHhccCCCCCCCCCcChHhHhhcc-C
Q 000334 1482 ----------R---QGFWKDHLRG-RPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHT-V 1546 (1646)
Q Consensus 1482 ----------~---~gyw~~~l~~-~~YfNSGvlliNL~~~R~~~~~dkl~~~~q~Ls~~~~sl~~~DQDllN~v~~~-~ 1546 (1646)
. +++|...-+. +-|||||+||++-.+..-..+..-. +=+|-.|. ..+.|.++|...+. +
T Consensus 231 ~~ly~Pylf~a~~dq~~~hstpP~fk~~FnagLmv~~Psk~hm~riv~~a---lPklydda---~mmeqsllnlaYn~~g 304 (368)
T COG5597 231 AALYAPYLFWARTDQTFLHSTPPDFKLKFNAGLMVGLPSKMHMLRIVWFA---LPKLYDDA---DMMEQSLLNLAYNYEG 304 (368)
T ss_pred hhhccccccccccCCcccccCCCcHhhhhccCceeecchHHHHHHHHHHh---hHHhhhhh---hHHHHHHHHHHHhhhc
Confidence 1 2222222121 4799999999998876544322211 11110111 12358888877653 3
Q ss_pred --cccccCCcccccCCccCcc
Q 000334 1547 --PIFSLPQEWLWCESWCGNA 1565 (1646)
Q Consensus 1547 --~I~~Lp~~wN~~~~~~~~~ 1565 (1646)
|+-.++..|| +-|..+.
T Consensus 305 ~FPwerld~~yN--G~wa~~n 323 (368)
T COG5597 305 FFPWERLDPRYN--GYWADAN 323 (368)
T ss_pred cCchhhcCcccc--ccccccc
Confidence 5667777877 5565433
No 27
>PF03414 Glyco_transf_6: Glycosyltransferase family 6; InterPro: IPR005076 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 6 GT6 from CAZY comprises enzymes with three known activities; alpha-1,3-galactosyltransferase (2.4.1.151 from EC); alpha-1,3 N-acetylgalactosaminyltransferase (2.4.1.40 from EC); alpha-galactosyltransferase (2.4.1.37 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane; PDB: 2Y7A_B 2O1G_A 1R82_A 2RJ1_A 3IOJ_B 2RJ4_A 3I0C_A 3SX8_A 1ZJ1_A 3I0E_A ....
Probab=96.23 E-value=0.086 Score=62.81 Aligned_cols=224 Identities=15% Similarity=0.107 Sum_probs=110.8
Q ss_pred cCceeEEEEeecCcchHHHHHHHHHHHHhc--CCCCeEEEEEECCCChhHHHHHHHHHhhcCcEEEEEEecCCccccccc
Q 000334 1335 HGKTINIFSIASGHLYERFLKIMILSVLKN--TCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQK 1412 (1646)
Q Consensus 1335 ~~~~InIf~vas~~~ye~~l~v~I~SIl~n--t~~~v~F~il~~~lS~~~k~~L~~l~~~~~~~i~~v~~~wp~~L~~~~ 1412 (1646)
.+-+|=+.++|.| .|..++.-.+.|.=+| ...+|+|||++|..+ .++.+.-..+-++..+.+. ...+-|-
T Consensus 97 ~n~tIGL~vfA~G-kY~~fl~~Fl~SAek~Fm~g~~V~YYVFTD~p~-----~vP~i~l~~~r~~~V~~v~--~~~~Wqd 168 (337)
T PF03414_consen 97 QNITIGLTVFATG-KYIVFLKDFLESAEKHFMVGHRVIYYVFTDQPS-----KVPRIELGPGRRLKVFEVQ--EEKRWQD 168 (337)
T ss_dssp CT-EEEEEEEE-C-CHHHHHHHHHHHHHHHBSTTSEEEEEEEES-GG-----GS------TTEEEEEEE-S--GGSSHHH
T ss_pred cCceEEEEEEecc-cHHHHHHHHHHhHHHhccCCcEEEEEEEeCchh-----hCCccccCCCceeEEEEec--ccCCCcc
Confidence 3456767777776 8988999999999887 346899999998754 2344333345566666663 2111111
Q ss_pred ccccHHHHHHHHhhcccCCCCCCeEEEEeCceeeccCchH-HHhcCCCCCeeEEeeecCCCCccCCccccccccccccc-
Q 000334 1413 EKQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGE-LYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHL- 1490 (1646)
Q Consensus 1413 ~~~r~~~~y~RLfL~~LfP~~vdkVIYLDaD~Iv~~Dl~e-L~~lDl~g~~~aav~d~~s~~~~~g~~fw~~gyw~~~l- 1490 (1646)
..-+++.++.......++ .++|-+.++|+|+++.+++-. .. |..+|...-.-..+....+.|-+..--..++
T Consensus 169 ~sm~Rm~~i~~~i~~~~~-~EvDYLFc~dvd~~F~~~vGvE~L-----g~lva~LHp~~y~~~~~~FpYERrp~S~AyIp 242 (337)
T PF03414_consen 169 ISMMRMEMISEHIEQHIQ-HEVDYLFCMDVDMVFQDHVGVEIL-----GDLVATLHPWFYFKPRESFPYERRPKSQAYIP 242 (337)
T ss_dssp HHHHHHHHHHHHHHHCHH-HH-SEEEEEESSEEE-S-B-GGG------SSEEEEESTTTTTSTGGGS--B-STTSTTB--
T ss_pred chhHHHHHHHHHHHHHHh-hcCCEEEEEecceEEecccCHHHH-----HHHHHHhCHHHHCCChhhCccccCcccccccc
Confidence 111222233332333444 579999999999999987763 22 4456654221111111112221111001122
Q ss_pred --CCCCeeecceeeeeHHHHHhhcHHHHHHHHH-HHhccCCCCCCCCCcChHhHhhc-cCcccccCCcccccCCccCccc
Q 000334 1491 --RGRPYHISALYVVDLKRFRETAAGDNLRVFY-ETLSKDPNSLANLDQDLPNYAQH-TVPIFSLPQEWLWCESWCGNAT 1566 (1646)
Q Consensus 1491 --~~~~YfNSGvlliNL~~~R~~~~~dkl~~~~-q~Ls~~~~sl~~~DQDllN~v~~-~~~I~~Lp~~wN~~~~~~~~~~ 1566 (1646)
.|..|+-+|++==-..++.+. ++.|...+ +-+.++... .+.|..-||-.+. ..|.+.|+++|+|.+.+-....
T Consensus 243 ~~eGDfYY~ga~fGGt~~~vl~L--t~~c~~~i~~D~~n~I~A-~WhDESHLNKYfl~~KPtKvLSPEY~Wd~~~~~p~~ 319 (337)
T PF03414_consen 243 YGEGDFYYHGAFFGGTVEEVLRL--TEACHQGIMQDKANGIEA-LWHDESHLNKYFLYHKPTKVLSPEYCWDERFGWPPQ 319 (337)
T ss_dssp TT--S--EECCEEEECHHHHHHH--HHHHHHHHHHHHHTT----TTCHHHHHHHHHHHS--SEEE-GGGSBSHHHSS-TT
T ss_pred CCCCCeEEeceecCCcHHHHHHH--HHHHHHHHHhhhhcCceE-eccchhhhHHHHhhCCCceecCHHHccCccCCCCcc
Confidence 257898888875444444333 23333322 222233343 4679999997663 4678899999999887654444
Q ss_pred cCCCeEEEc
Q 000334 1567 KSKAKTIDL 1575 (1646)
Q Consensus 1567 ~~~akiI~~ 1575 (1646)
.+..|+++.
T Consensus 320 ik~vr~~~~ 328 (337)
T PF03414_consen 320 IKIVRFSWV 328 (337)
T ss_dssp ESSSSEEES
T ss_pred cceEEEEEe
Confidence 555555544
No 28
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=94.31 E-value=0.085 Score=62.35 Aligned_cols=110 Identities=19% Similarity=0.230 Sum_probs=68.9
Q ss_pred EEEeecCcchHHHHHHHHHHHHhc-CCCCeEEEEEE-CCCChhHHHHHHHHHhhcCcEEEEEEecCCcccccccccccHH
Q 000334 1341 IFSIASGHLYERFLKIMILSVLKN-TCRPVKFWFIK-NYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRII 1418 (1646)
Q Consensus 1341 If~vas~~~ye~~l~v~I~SIl~n-t~~~v~F~il~-~~lS~~~k~~L~~l~~~~~~~i~~v~~~wp~~L~~~~~~~r~~ 1418 (1646)
|+.++ |+.|...+..+|..+-+. ++-||-++.-. +++++++++.|.. ..++.+++.. |..........-..
T Consensus 4 IVi~~-g~~~~~~a~~lI~~LR~~g~~LPIEI~~~~~~dl~~~~~~~l~~-----~q~v~~vd~~-~~~~~~~~~~~~~~ 76 (271)
T PF11051_consen 4 IVITA-GDKYLWLALRLIRVLRRLGNTLPIEIIYPGDDDLSKEFCEKLLP-----DQDVWFVDAS-CVIDPDYLGKSFSK 76 (271)
T ss_pred EEEEe-cCccHHHHHHHHHHHHHhCCCCCEEEEeCCccccCHHHHHHHhh-----hhhhheecce-EEeecccccccccc
Confidence 44333 557777766666666543 22488888776 8899998887766 2344455543 22111111000000
Q ss_pred HHHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhcCC
Q 000334 1419 WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDI 1458 (1646)
Q Consensus 1419 ~~y~RLfL~~LfP~~vdkVIYLDaD~Iv~~Dl~eL~~lDl 1458 (1646)
..|..-.+..+|- +.+.|||||+|.|...|+..||+..-
T Consensus 77 ~~~~~K~lA~l~s-sFeevllLDaD~vpl~~p~~lF~~~~ 115 (271)
T PF11051_consen 77 KGFQNKWLALLFS-SFEEVLLLDADNVPLVDPEKLFESEE 115 (271)
T ss_pred CCchhhhhhhhhC-CcceEEEEcCCcccccCHHHHhcCcc
Confidence 0455555667785 79999999999999999999998643
No 29
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=92.99 E-value=4.5 Score=44.03 Aligned_cols=144 Identities=8% Similarity=0.015 Sum_probs=87.0
Q ss_pred ccccceEEEEcCCCcchHHHHHHHHHHHhcc-cceEEEEEeeecccccchhccCCCCCCCcccCCCCCCcchhHHHHHHH
Q 000334 531 KNLFHAVYVLDPATVCGLEVIDMIMSLYENH-FPLRFGVILYSSKFIKSIEINGGELHSPVAEDDSPVNEDISSLIIRLF 609 (1646)
Q Consensus 531 rNl~nlVfvIDps~~~~~~~~~~l~~~v~~~-~PiR~GlVp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~s~~~~~~~ 609 (1646)
..=..+|.+.||..+....+-..+..++++. --+||.++|++.. ...+...++++
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~~~------------------------~~~~~~aa~a~ 69 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPVVFG------------------------GGEGEPLARAF 69 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCCccc------------------------cccchHHHHHH
Confidence 4456799999999998877777777665543 2467778887643 01234556776
Q ss_pred HHHHHhhChHHHHHHHHHHHhhhcccCCCCCCchhhhhhHHHHHHhhhcCCCCCCChhhhhhhhccchhhHHHHHHHHHH
Q 000334 610 LFIKESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEKEKTFMDQSQESSMFV 689 (1646)
Q Consensus 610 ~~l~~~~g~~~a~~FL~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 689 (1646)
+..... |.. ..|...++....... .+..+.+.+.+.. +. . ..+.+.+.....+.++...++...+..
T Consensus 70 ~aa~~~-~~~--~~~~~~lf~~~~~~~----~~~~~~~~l~~~a-~~----~-Gl~~~~~~~~~~s~~~~~~i~~~~~~~ 136 (178)
T cd03019 70 YAAEAL-GLE--DKLHAALFEAIHEKR----KRLLDPDDIRKIF-LS----Q-GVDKKKFDAAYNSFSVKALVAKAEKLA 136 (178)
T ss_pred HHHHHc-CcH--hhhhHHHHHHHHHhC----CCCCCHHHHHHHH-HH----h-CCCHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 665443 322 234444433211100 0111223333333 22 1 234445666777778888888889999
Q ss_pred HHhCCCCCCccEEEcceeccCch
Q 000334 690 FKLGLTKLKCCLLMNGLVSESSE 712 (1646)
Q Consensus 690 ~rlgi~~~~p~vlvNG~~~~~~~ 712 (1646)
+++|+.+ .|.++|||+.+....
T Consensus 137 ~~~gi~g-TPt~iInG~~~~~~~ 158 (178)
T cd03019 137 KKYKITG-VPAFVVNGKYVVNPS 158 (178)
T ss_pred HHcCCCC-CCeEEECCEEEEChh
Confidence 9999965 699999999776543
No 30
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=90.66 E-value=0.64 Score=52.64 Aligned_cols=110 Identities=19% Similarity=0.150 Sum_probs=61.8
Q ss_pred HHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhcCCCCCeeEEeeecCCCCccCCcccccccccccccCCCCeeecce
Q 000334 1421 YKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLRGRPYHISAL 1500 (1646)
Q Consensus 1421 y~RLfL~~LfP~~vdkVIYLDaD~Iv~~Dl~eL~~lDl~g~~~aav~d~~s~~~~~g~~fw~~gyw~~~l~~~~YfNSGv 1500 (1646)
.+--++-.++-..+ .|+|+|+|++...|+.+++ +-.+.-+.+..++....... +....+|+|+
T Consensus 54 ~K~~~~~~~L~~G~-~vl~~D~Dvv~~~dp~~~~--~~~~~Di~~~~d~~~~~~~~--------------~~~~~~n~G~ 116 (212)
T PF03407_consen 54 LKPKVLLDLLELGY-DVLFSDADVVWLRDPLPYF--ENPDADILFSSDGWDGTNSD--------------RNGNLVNTGF 116 (212)
T ss_pred HHHHHHHHHHHcCC-ceEEecCCEEEecCcHHhh--ccCCCceEEecCCCcccchh--------------hcCCccccce
Confidence 33344445554444 5999999999999999999 22334444444543211000 1123459999
Q ss_pred eeeeHHHHHhhcHHHHHHHHHHHhccCCCCCCCCCcChHhHhhccC-------cccccCCc
Q 000334 1501 YVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTV-------PIFSLPQE 1554 (1646)
Q Consensus 1501 lliNL~~~R~~~~~dkl~~~~q~Ls~~~~sl~~~DQDllN~v~~~~-------~I~~Lp~~ 1554 (1646)
|.+--.. +-..+.+.+...+. ..+. .-||.++|.++... .+..||..
T Consensus 117 ~~~r~t~-~~~~~~~~w~~~~~---~~~~---~~DQ~~~n~~l~~~~~~~~~~~~~~L~~~ 170 (212)
T PF03407_consen 117 YYFRPTP-RTIAFLEDWLERMA---ESPG---CWDQQAFNELLREQAARYGGLRVRFLPPS 170 (212)
T ss_pred EEEecCH-HHHHHHHHHHHHHH---hCCC---cchHHHHHHHHHhcccCCcCcEEEEeCHH
Confidence 9986544 22222333333333 2322 13999999988752 24556654
No 31
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=88.93 E-value=11 Score=39.66 Aligned_cols=136 Identities=14% Similarity=0.119 Sum_probs=82.7
Q ss_pred cceEEEEcCCCcchHHHHHHHHHHHhcccc-eEEEEEeeecccccchhccCCCCCCCcccCCCCCCcchhHHHHHHHHHH
Q 000334 534 FHAVYVLDPATVCGLEVIDMIMSLYENHFP-LRFGVILYSSKFIKSIEINGGELHSPVAEDDSPVNEDISSLIIRLFLFI 612 (1646)
Q Consensus 534 ~nlVfvIDps~~~~~~~~~~l~~~v~~~~P-iR~GlVp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~s~~~~~~~~~l 612 (1646)
..++.+.||..+....+-..+..++... | +|+=+.+++-. ...+...+++...+
T Consensus 7 ~~i~~f~D~~Cp~C~~~~~~l~~~~~~~-~~~~~~~~~~p~~------------------------~~~~~~~~~~~~~~ 61 (154)
T cd03023 7 VTIVEFFDYNCGYCKKLAPELEKLLKED-PDVRVVFKEFPIL------------------------GESSVLAARVALAV 61 (154)
T ss_pred EEEEEEECCCChhHHHhhHHHHHHHHHC-CCceEEEEeCCcc------------------------CcchHHHHHHHHHH
Confidence 4688999999998888777777654332 3 34444443211 01234455555555
Q ss_pred HHhhChHHHHHHHHHHHhhhcccCCCCCCchhhhhhHHHHHHhhhcCCCCCCChhhhhhhhccchhhHHHHHHHHHHHHh
Q 000334 613 KESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEKEKTFMDQSQESSMFVFKL 692 (1646)
Q Consensus 613 ~~~~g~~~a~~FL~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~rl 692 (1646)
.+ .+......|...++..... .+.+.+.... +. ...+.+.+...+.+..+...++...+..+++
T Consensus 62 ~~-~~~~~~~~~~~~lf~~~~~---------~~~~~l~~~a-~~-----~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (154)
T cd03023 62 WK-NGPGKYLEFHNALMATRGR---------LNEESLLRIA-KK-----AGLDEAKLKKDMDDPEIEATIDKNRQLARAL 125 (154)
T ss_pred HH-hChhHHHHHHHHHHhcCCC---------CCHHHHHHHH-HH-----cCCCHHHHHHHhhChHHHHHHHHHHHHHHHc
Confidence 54 3556667777777653311 1122222222 11 1234445666677777888888888899999
Q ss_pred CCCCCCccEEEcceeccCc
Q 000334 693 GLTKLKCCLLMNGLVSESS 711 (1646)
Q Consensus 693 gi~~~~p~vlvNG~~~~~~ 711 (1646)
||.+ .|.++|||+.+...
T Consensus 126 gi~g-tPt~~v~g~~~~G~ 143 (154)
T cd03023 126 GITG-TPAFIIGDTVIPGA 143 (154)
T ss_pred CCCc-CCeEEECCEEecCC
Confidence 9966 69999999987643
No 32
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=86.65 E-value=20 Score=38.31 Aligned_cols=134 Identities=12% Similarity=0.087 Sum_probs=78.0
Q ss_pred cceEEEEcCCCcchHHHHHHHHHHHhc---ccceEEEEEeeecccccchhccCCCCCCCcccCCCCCCcchhHHHHHHHH
Q 000334 534 FHAVYVLDPATVCGLEVIDMIMSLYEN---HFPLRFGVILYSSKFIKSIEINGGELHSPVAEDDSPVNEDISSLIIRLFL 610 (1646)
Q Consensus 534 ~nlVfvIDps~~~~~~~~~~l~~~v~~---~~PiR~GlVp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~s~~~~~~~~ 610 (1646)
..|+.+.||..+...++...+..++++ .=-++|-++|+.-. ...+...+.+..
T Consensus 14 ~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~------------------------~~~~~~a~~~~~ 69 (162)
T PF13462_consen 14 ITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLD------------------------KHSSLRAAMAAE 69 (162)
T ss_dssp EEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSS------------------------HHHHHHHHHHHH
T ss_pred eEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcccc------------------------chhHHHHHHHHH
Confidence 478999999999988876666555444 22667777766433 011345566666
Q ss_pred HHHHhhChHHHHHHHHHHHhhhcccCCCCCCchhhhhhHHHHHHhhhcCCCCCCChhhhhhhhccchhhHHHHHHHHHHH
Q 000334 611 FIKESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEKEKTFMDQSQESSMFVF 690 (1646)
Q Consensus 611 ~l~~~~g~~~a~~FL~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 690 (1646)
.+.+. | ..+.++.+++....... . .. ..+. +. .......+...+.+.++...+....++.+
T Consensus 70 ~~~~~-~--~~~~~~~~~~~~~~~~~----~--~~-~~i~----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (162)
T PF13462_consen 70 CVADQ-G--KYFWFFHELLFSQQENF----E--NK-KDIA----AN-----AGGSNEQFNKCLNSDEIKAQLEADSQLAR 130 (162)
T ss_dssp HHHHH-T--HHHHHHHHHHHHHCHST----S--SH-HHHH----HH-----TTSHHHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred HHHHH-h--HHHHHHHHHHHHhhhcc----c--hh-HHHH----HH-----cCCCHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 66555 4 55566665443222110 0 01 1111 00 01112334445566678888888899999
Q ss_pred HhCCCCCCccEEEcceeccCc
Q 000334 691 KLGLTKLKCCLLMNGLVSESS 711 (1646)
Q Consensus 691 rlgi~~~~p~vlvNG~~~~~~ 711 (1646)
+.||.+ .|.++|||+.++..
T Consensus 131 ~~~i~~-tPt~~inG~~~~~~ 150 (162)
T PF13462_consen 131 QLGITG-TPTFFINGKYVVGP 150 (162)
T ss_dssp HHT-SS-SSEEEETTCEEETT
T ss_pred HcCCcc-ccEEEECCEEeCCC
Confidence 999954 69999999998643
No 33
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=83.52 E-value=3.9 Score=38.81 Aligned_cols=52 Identities=17% Similarity=0.401 Sum_probs=37.5
Q ss_pred EEEEeccCCCCCCCCeEEEEecCCCCcccceEEEecceeeeee-eCCceeEEEe
Q 000334 1182 LTGHCSEKDHEPPQGLQLILGTKSTPHLVDTLVMANLGYWQMK-VSPGVWYLQL 1234 (1646)
Q Consensus 1182 iEGha~d~~~~pprGlqL~L~t~~~~~~~DTiVManlGYfQlk-a~PG~w~l~l 1234 (1646)
|.|.-+|..+.|..|..+.|.+..+... .+.+=..-|+|.|. ..||-|.|.+
T Consensus 2 I~G~V~d~~g~pv~~a~V~l~~~~~~~~-~~~~Td~~G~f~~~~l~~g~Y~l~v 54 (82)
T PF13620_consen 2 ISGTVTDATGQPVPGATVTLTDQDGGTV-YTTTTDSDGRFSFEGLPPGTYTLRV 54 (82)
T ss_dssp EEEEEEETTSCBHTT-EEEET--TTTEC-CEEE--TTSEEEEEEE-SEEEEEEE
T ss_pred EEEEEEcCCCCCcCCEEEEEEEeeCCCE-EEEEECCCceEEEEccCCEeEEEEE
Confidence 7899999866999999999987655543 44444445999998 8999999987
No 34
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=79.09 E-value=26 Score=35.46 Aligned_cols=88 Identities=18% Similarity=0.184 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEEECCCChhHHHHHHHHHhhcCcEEEEEEecCCcccccccccccHHHHHHHHhhcccC
Q 000334 1351 ERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDVIF 1430 (1646)
Q Consensus 1351 e~~l~v~I~SIl~nt~~~v~F~il~~~lS~~~k~~L~~l~~~~~~~i~~v~~~wp~~L~~~~~~~r~~~~y~RLfL~~Lf 1430 (1646)
.+.+..++.|+++....++.++|+.+.-+++..+.+..+... ...+..+... . ......+.. ..+...
T Consensus 9 ~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~-------~~g~~~~~~-~~~~~~- 76 (156)
T cd00761 9 EPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK-DPRVIRVINE--E-------NQGLAAARN-AGLKAA- 76 (156)
T ss_pred HHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc-CCCeEEEEec--C-------CCChHHHHH-HHHHHh-
Confidence 677889999999887667899999998888888777777543 1112122111 1 011100110 111111
Q ss_pred CCCCCeEEEEeCceeeccCchH
Q 000334 1431 PLSLEKVIFVDADQVVRADMGE 1452 (1646)
Q Consensus 1431 P~~vdkVIYLDaD~Iv~~Dl~e 1452 (1646)
..+.++++|+|.++..+.-+
T Consensus 77 --~~d~v~~~d~D~~~~~~~~~ 96 (156)
T cd00761 77 --RGEYILFLDADDLLLPDWLE 96 (156)
T ss_pred --cCCEEEEECCCCccCccHHH
Confidence 58999999999988766443
No 35
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=76.58 E-value=79 Score=34.78 Aligned_cols=156 Identities=13% Similarity=0.036 Sum_probs=83.5
Q ss_pred ceEEEEcCCCcchHHHHHHHHHHHhcccceEEEEEeeecccccchhccCCCCCCCc---------------cc-----CC
Q 000334 535 HAVYVLDPATVCGLEVIDMIMSLYENHFPLRFGVILYSSKFIKSIEINGGELHSPV---------------AE-----DD 594 (1646)
Q Consensus 535 nlVfvIDps~~~~~~~~~~l~~~v~~~~PiR~GlVp~~~~~~~~~~~~~g~~~~~~---------------~~-----~~ 594 (1646)
.|+|+.|+.++-..-....+..+.+..-.++|=..|+.=. +.....+|..+... .. ..
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~gi~~~~ 78 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR--PDMRRSGGAPPAEDPAKAEYMFQDLERWARRYGIPFNF 78 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS--THHHHCT-SCGCGSHHHHHHHHHHHHHHHHHHT--TBT
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc--cccccCCCCCcccChhHHHHHHHHHHHHHHHhcCcccC
Confidence 4789999999988776666776654443466655555321 11111111100000 00 00
Q ss_pred CCCCcchhHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcccCCCCCCchhhhhhHHHHHHhhhcCCCCCCChhhhhhhhc
Q 000334 595 SPVNEDISSLIIRLFLFIKESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEK 674 (1646)
Q Consensus 595 ~~~~~~~s~~~~~~~~~l~~~~g~~~a~~FL~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 674 (1646)
.......+....++++++.+. | ....|...++...-.. ..+.-+.+.+.+.+ ++ .....+.++..+.
T Consensus 79 ~~~~~~~s~~a~~~~~~a~~~-~--~~~~~~~al~~a~~~~----~~~i~~~~vl~~~~-~~-----~Gld~~~~~~~~~ 145 (193)
T PF01323_consen 79 PPPFPGNSRPAHRAAYAAQEQ-G--KADAFADALFRAYFVE----GRDISDPDVLAEIA-EE-----AGLDPDEFDAALD 145 (193)
T ss_dssp SSTHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHTS----ST-TSSHHHHHHHH-HH-----TT--HHHHHHHHT
T ss_pred CchhhhhhHHHHHHHHHHHHh-h--hhhHHHHHHHHHHHhc----ccCCCCHHHHHHHH-HH-----cCCcHHHHHHHhc
Confidence 000001345566667776655 3 4445555554332110 01112333344444 22 1335556777778
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCCccEEEcce
Q 000334 675 EKTFMDQSQESSMFVFKLGLTKLKCCLLMNGL 706 (1646)
Q Consensus 675 ~~~~d~~~~~~~~~~~rlgi~~~~p~vlvNG~ 706 (1646)
++.+...+.+..+-..++|+.+ .|.++|||.
T Consensus 146 ~~~~~~~~~~~~~~a~~~gv~G-vP~~vv~g~ 176 (193)
T PF01323_consen 146 SPEVKAALEEDTAEARQLGVFG-VPTFVVNGK 176 (193)
T ss_dssp SHHHHHHHHHHHHHHHHTTCSS-SSEEEETTT
T ss_pred chHHHHHHHHHHHHHHHcCCcc-cCEEEECCE
Confidence 8888888888888889999966 699999999
No 36
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=74.14 E-value=7.4 Score=41.55 Aligned_cols=50 Identities=24% Similarity=0.272 Sum_probs=37.4
Q ss_pred ceeccCCCCCCceEEEEeecCchhHHHHHHHHHHH----HHcCCeeEEEeecCCC
Q 000334 218 DHIHAESSISSRTAILYGALGSDCFKEFHINLVQA----AKEGKVMYVVRPVLPS 268 (1646)
Q Consensus 218 Dhv~~~~~~~~p~vILYg~i~s~~F~~fh~~L~~~----A~~Gki~YV~R~~~~~ 268 (1646)
+.++| ...+.++|+.|.++..+--+.||..+.+. ...|+++|++|+++..
T Consensus 4 ~~~~G-~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~ 57 (162)
T PF13462_consen 4 DPTIG-NPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLD 57 (162)
T ss_dssp SEEES--TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSS
T ss_pred CCeec-CCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcccc
Confidence 55666 33355689999999999988898888543 2369999999999765
No 37
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=73.69 E-value=1.4e+02 Score=32.35 Aligned_cols=144 Identities=10% Similarity=0.083 Sum_probs=68.8
Q ss_pred CcceEEEEEeeCCCHHHHHHHHHHHHHHhcCCCceEEEEEEcCCCCCCCchhHHHHHHHHhhhccchhhHHHHHHHHHhh
Q 000334 797 VKPVTHLLAVDVTSKKGMKLLHEGIRFLIGGSNGARLGVLFSASREADLPSIIFVKAFEITASTYSHKKKVLEFLDQLCS 876 (1646)
Q Consensus 797 ~~~~t~~lv~Df~s~~g~~~l~~al~~~~~~~~~~Rv~~i~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~ 876 (1646)
..++++..+.||.++-....-...-+.+++...++|+.++|.+..... .....+++.++.. .. ....+...+..
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~aa~a~~aa~~-~~---~~~~~~~~lf~ 87 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPVVFGGGE--GEPLARAFYAAEA-LG---LEDKLHAALFE 87 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCCcccccc--chHHHHHHHHHHH-cC---cHhhhhHHHHH
Confidence 346888899999999666655444444434345778877775532211 1223333333211 11 11122222222
Q ss_pred hhhhhhhhcccccccchHHHHHHHHHHHhhcCCChHHHhhhcCccchhhhHHHHHHHHHHHHHHhCCCCCCcEEEEcCEE
Q 000334 877 FYERTYLLASSATADSTQAFIDKVCEFAEANGLSSKVYRASLPEYSKGKVRKQLNKVVQFLHRQLGVESGANAVITNGRV 956 (1646)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vv~NGR~ 956 (1646)
..... .....+ .+.+.+.++..+++.+.+...+.+- .....+..... ....+|+. |.+.+++||+.
T Consensus 88 ~~~~~--------~~~~~~-~~~l~~~a~~~Gl~~~~~~~~~~s~---~~~~~i~~~~~-~~~~~gi~-gTPt~iInG~~ 153 (178)
T cd03019 88 AIHEK--------RKRLLD-PDDIRKIFLSQGVDKKKFDAAYNSF---SVKALVAKAEK-LAKKYKIT-GVPAFVVNGKY 153 (178)
T ss_pred HHHHh--------CCCCCC-HHHHHHHHHHhCCCHHHHHHHHhCH---HHHHHHHHHHH-HHHHcCCC-CCCeEEECCEE
Confidence 11000 000000 1223344555667766665544322 12222222222 23445765 88999999999
Q ss_pred ecCC
Q 000334 957 TFPI 960 (1646)
Q Consensus 957 i~~~ 960 (1646)
+...
T Consensus 154 ~~~~ 157 (178)
T cd03019 154 VVNP 157 (178)
T ss_pred EECh
Confidence 8543
No 38
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=69.66 E-value=25 Score=34.17 Aligned_cols=54 Identities=26% Similarity=0.461 Sum_probs=46.1
Q ss_pred eEEEEEEeccCCCCCCCCeEEEEecCCCCcccceEEEecceeeeeeeCCceeEEEe
Q 000334 1179 ALVLTGHCSEKDHEPPQGLQLILGTKSTPHLVDTLVMANLGYWQMKVSPGVWYLQL 1234 (1646)
Q Consensus 1179 ~iliEGha~d~~~~pprGlqL~L~t~~~~~~~DTiVManlGYfQlka~PG~w~l~l 1234 (1646)
-.+|.|... ....|..|--..|.++++.-+.+..+-++ |=|-|=|.||.|.++.
T Consensus 7 e~VItG~V~-~~G~Pv~gAyVRLLD~sgEFtaEvvts~~-G~FRFfaapG~WtvRa 60 (85)
T PF07210_consen 7 ETVITGRVT-RDGEPVGGAYVRLLDSSGEFTAEVVTSAT-GDFRFFAAPGSWTVRA 60 (85)
T ss_pred eEEEEEEEe-cCCcCCCCeEEEEEcCCCCeEEEEEecCC-ccEEEEeCCCceEEEE
Confidence 568899987 44589999999999988887777777777 9999999999999985
No 39
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=68.41 E-value=28 Score=36.19 Aligned_cols=92 Identities=17% Similarity=0.210 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEEECCCChhHHHHHHHHHhhcCcEEEEEEecCCcccccccccccHHHHHHHHhhcccC
Q 000334 1351 ERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDVIF 1430 (1646)
Q Consensus 1351 e~~l~v~I~SIl~nt~~~v~F~il~~~lS~~~k~~L~~l~~~~~~~i~~v~~~wp~~L~~~~~~~r~~~~y~RLfL~~Lf 1430 (1646)
...+.-+|.|+.+.+..++.++|++++-+++..+.+.++.+ .+..++++... .-. ....+. ...+...
T Consensus 10 ~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~-~~~~i~~i~~~--~n~-------g~~~~~-n~~~~~a- 77 (169)
T PF00535_consen 10 AEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAE-SDPNIRYIRNP--ENL-------GFSAAR-NRGIKHA- 77 (169)
T ss_dssp TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHC-CSTTEEEEEHC--CCS-------HHHHHH-HHHHHH--
T ss_pred HHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccc-ccccccccccc--ccc-------cccccc-ccccccc-
Confidence 66777889999988777899999998889999888888876 45556666543 111 111111 1222222
Q ss_pred CCCCCeEEEEeCceeeccC-chHHHhc
Q 000334 1431 PLSLEKVIFVDADQVVRAD-MGELYDM 1456 (1646)
Q Consensus 1431 P~~vdkVIYLDaD~Iv~~D-l~eL~~l 1456 (1646)
.-+-|+++|+|.++..+ +.+|++.
T Consensus 78 --~~~~i~~ld~D~~~~~~~l~~l~~~ 102 (169)
T PF00535_consen 78 --KGEYILFLDDDDIISPDWLEELVEA 102 (169)
T ss_dssp ---SSEEEEEETTEEE-TTHHHHHHHH
T ss_pred --ceeEEEEeCCCceEcHHHHHHHHHH
Confidence 24599999999999877 7777754
No 40
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=68.40 E-value=42 Score=32.29 Aligned_cols=47 Identities=21% Similarity=0.453 Sum_probs=37.5
Q ss_pred EEEEeccCCC-CCCCCeEEEEecCCCCcccceEEEec-ceeeeeeeCCceeEEEe
Q 000334 1182 LTGHCSEKDH-EPPQGLQLILGTKSTPHLVDTLVMAN-LGYWQMKVSPGVWYLQL 1234 (1646)
Q Consensus 1182 iEGha~d~~~-~pprGlqL~L~t~~~~~~~DTiVMan-lGYfQlka~PG~w~l~l 1234 (1646)
|.|.-.|..+ .|..|+-+.+.+... -+++| -|+|.|++++|-+.|.+
T Consensus 2 i~G~V~d~~t~~pl~~a~V~~~~~~~------~~~Td~~G~F~i~~~~g~~~l~i 50 (88)
T PF13715_consen 2 ISGKVVDSDTGEPLPGATVYLKNTKK------GTVTDENGRFSIKLPEGDYTLKI 50 (88)
T ss_pred EEEEEEECCCCCCccCeEEEEeCCcc------eEEECCCeEEEEEEcCCCeEEEE
Confidence 5788889885 999999999987642 23333 49999999999999987
No 41
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=58.84 E-value=31 Score=36.63 Aligned_cols=59 Identities=22% Similarity=0.426 Sum_probs=44.4
Q ss_pred eEEEEEEeccCCCCCCCCeEEEEecCCC--CcccceEE---EecceeeeeeeCCceeEEEecCC
Q 000334 1179 ALVLTGHCSEKDHEPPQGLQLILGTKST--PHLVDTLV---MANLGYWQMKVSPGVWYLQLAPG 1237 (1646)
Q Consensus 1179 ~iliEGha~d~~~~pprGlqL~L~t~~~--~~~~DTiV---ManlGYfQlka~PG~w~l~l~~G 1237 (1646)
+++|.|==.|-.+.|..|-+++|....+ .++..|.. =.+-|||=|.+.||.|.+.|...
T Consensus 2 sV~ISGvL~dg~G~pv~g~~I~L~A~~tS~~Vv~~t~as~~t~~~G~Ys~~~epG~Y~V~l~~~ 65 (134)
T PF08400_consen 2 SVKISGVLKDGAGKPVPGCTITLKARRTSSTVVVGTVASVVTGEAGEYSFDVEPGVYRVTLKVE 65 (134)
T ss_pred eEEEEEEEeCCCCCcCCCCEEEEEEccCchheEEEEEEEEEcCCCceEEEEecCCeEEEEEEEC
Confidence 4678888888888999999999975432 23333332 25679999999999999998643
No 42
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=57.04 E-value=1.7e+02 Score=32.22 Aligned_cols=156 Identities=13% Similarity=0.060 Sum_probs=77.7
Q ss_pred cceEEEEcCCCcchHHHHHHHHHHHhc---ccceEEEEEeeecccccc--h------------hc-cCCCCCC--CcccC
Q 000334 534 FHAVYVLDPATVCGLEVIDMIMSLYEN---HFPLRFGVILYSSKFIKS--I------------EI-NGGELHS--PVAED 593 (1646)
Q Consensus 534 ~nlVfvIDps~~~~~~~~~~l~~~v~~---~~PiR~GlVp~~~~~~~~--~------------~~-~~g~~~~--~~~~~ 593 (1646)
+++.++.||.++-..-....+..+.++ ++.+++=+.++...+.+. . .. ..|. +. +....
T Consensus 1 ~~i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~ 79 (193)
T cd03025 1 LELYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVELHLGGLLPGNNARQITKQWRIYVHWHKARIALTGQ-PFGEDYLEL 79 (193)
T ss_pred CeEEEEECCCCchhhCchHHHHHHHHHhCCCceEEEEeccccCCCCCCCcchHHHHHHhHHHHHHHhcCC-ccCchhHhc
Confidence 357899999999876655566655443 788886554443331100 0 00 1110 00 00000
Q ss_pred CCCCCcchhHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcccCCCCCCchhhhhhHHHHHHhhhcCCCCCCChhhhhhhh
Q 000334 594 DSPVNEDISSLIIRLFLFIKESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLE 673 (1646)
Q Consensus 594 ~~~~~~~~s~~~~~~~~~l~~~~g~~~a~~FL~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~ 673 (1646)
. ...-.+....+++...... |......|+..+....-.. ..+..+.+.+.+.. +. .....+.+....
T Consensus 80 -~-~~~~~s~~a~~~~~aa~~~-~~~~~~~~~~~l~~a~~~~----~~~i~~~~~l~~ia-~~-----~Gld~~~~~~~~ 146 (193)
T cd03025 80 -L-LFDLDSAPASRAIKAARLQ-GPERLLEMLKAIQRAHYVE----GRDLADTEVLRELA-IE-----LGLDVEEFLEDF 146 (193)
T ss_pred -c-cCCCCchHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHc----CCCCCCHHHHHHHH-HH-----cCCCHHHHHHHH
Confidence 0 0000133445555555443 5555667777765432110 01111222333222 22 123334556666
Q ss_pred ccchhhHHHHHHHHHHHHhCCCCCCccEEEc
Q 000334 674 KEKTFMDQSQESSMFVFKLGLTKLKCCLLMN 704 (1646)
Q Consensus 674 ~~~~~d~~~~~~~~~~~rlgi~~~~p~vlvN 704 (1646)
.+..+...+....+...++|+.+ .|.++|+
T Consensus 147 ~s~~~~~~l~~~~~~a~~~gv~g-~Ptfvv~ 176 (193)
T cd03025 147 QSDEAKQAIQEDQKLARELGING-FPTLVLE 176 (193)
T ss_pred cChHHHHHHHHHHHHHHHcCCCc-cCEEEEE
Confidence 67778888888888888999976 4666664
No 43
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=54.56 E-value=1.1e+02 Score=31.68 Aligned_cols=91 Identities=14% Similarity=0.134 Sum_probs=56.6
Q ss_pred chHHHHHHHHHHHHhcCCCCeEEEEEECCCChhHHHHHHHHHhhcCcEEEEEEecCCcccccccccccH-HHHHHHHhhc
Q 000334 1349 LYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRI-IWAYKILFLD 1427 (1646)
Q Consensus 1349 ~ye~~l~v~I~SIl~nt~~~v~F~il~~~lS~~~k~~L~~l~~~~~~~i~~v~~~wp~~L~~~~~~~r~-~~~y~RLfL~ 1427 (1646)
+-.+.+..++.|++..+..++.++|+.++-++...+.+......+...+.++.- +. .....+- .+++..
T Consensus 7 n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~--~~----~~g~~~~~n~~~~~---- 76 (180)
T cd06423 7 NEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRD--KE----NGGKAGALNAGLRH---- 76 (180)
T ss_pred ChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccccceEEEEEe--cc----cCCchHHHHHHHHh----
Confidence 445788899999998776678999999888887777776665443222222211 11 1111111 122221
Q ss_pred ccCCCCCCeEEEEeCceeeccC-chHH
Q 000334 1428 VIFPLSLEKVIFVDADQVVRAD-MGEL 1453 (1646)
Q Consensus 1428 ~LfP~~vdkVIYLDaD~Iv~~D-l~eL 1453 (1646)
. .-+-|+++|+|.++..+ +.++
T Consensus 77 -~---~~~~i~~~D~D~~~~~~~l~~~ 99 (180)
T cd06423 77 -A---KGDIVVVLDADTILEPDALKRL 99 (180)
T ss_pred -c---CCCEEEEECCCCCcChHHHHHH
Confidence 1 47889999999988765 5555
No 44
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=52.96 E-value=70 Score=42.86 Aligned_cols=98 Identities=15% Similarity=0.316 Sum_probs=71.3
Q ss_pred eEEeccCCCCeEEeeecccccCCcccccccCCCcceEEEEEeeeEEEEEEeccCCCCCCCCeEEEEecCCCCcccceEEE
Q 000334 1136 LTMNLDVPEPWLVEPVIAVHDLDNILLEKLGDTRTLQAVFELEALVLTGHCSEKDHEPPQGLQLILGTKSTPHLVDTLVM 1215 (1646)
Q Consensus 1136 ltl~md~P~~WlV~~~~a~~DLDNI~L~~~~~~~~v~a~yeLe~iliEGha~d~~~~pprGlqL~L~t~~~~~~~DTiVM 1215 (1646)
|+|.+..|..|--+|..-..-.|-- .++= ..+=+.+|.+...-|.|..--..+-+|+|++.+|++..++ +..|.+=
T Consensus 78 yiLkIspP~GwsfePd~Vel~vDGk--td~C-s~n~DinFhftGFsv~GkVlgaaggGpagV~velrs~e~~-iast~T~ 153 (1165)
T KOG1948|consen 78 YILKISPPAGWSFEPDSVELKVDGK--TDAC-SLNEDINFHFTGFSVRGKVLGAAGGGPAGVLVELRSQEDP-IASTKTE 153 (1165)
T ss_pred EEEEecCCCCccccCceEEEEeccc--cccc-cCCCceEEEEeeeeEeeEEeeccCCCcccceeecccccCc-ceeeEec
Confidence 9999999999999886555433310 0000 1223458888888888887665557999999999988555 7788888
Q ss_pred ecceeeeee-eCCceeEEEecCCC
Q 000334 1216 ANLGYWQMK-VSPGVWYLQLAPGR 1238 (1646)
Q Consensus 1216 anlGYfQlk-a~PG~w~l~l~~Gr 1238 (1646)
++ |=|-|+ +-||-|.++--.++
T Consensus 154 ~~-Gky~f~~iiPG~Yev~ashp~ 176 (1165)
T KOG1948|consen 154 DG-GKYEFRNIIPGKYEVSASHPA 176 (1165)
T ss_pred CC-CeEEEEecCCCceEEeccCcc
Confidence 88 777777 99999998754443
No 45
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=51.76 E-value=1.2e+02 Score=33.36 Aligned_cols=95 Identities=18% Similarity=0.198 Sum_probs=61.1
Q ss_pred chHHHHHHHHHHHHhcCCCCeEEEEEECCCChhHHHHHHHHHhhcCcEEEEEEecCCcccccccccccHHHHHHHHhhcc
Q 000334 1349 LYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDV 1428 (1646)
Q Consensus 1349 ~ye~~l~v~I~SIl~nt~~~v~F~il~~~lS~~~k~~L~~l~~~~~~~i~~v~~~wp~~L~~~~~~~r~~~~y~RLfL~~ 1428 (1646)
+-...+..+|.||+..+..++.++|++++-++...+.++.+..+++..+.++.-. . ......+...- +
T Consensus 8 n~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~--~-------~~G~~~~~n~g-~-- 75 (214)
T cd04196 8 NGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNG--K-------NLGVARNFESL-L-- 75 (214)
T ss_pred CcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCC--C-------CccHHHHHHHH-H--
Confidence 4457788999999987766789999998888887888888876665343333221 1 11111111111 1
Q ss_pred cCCCCCCeEEEEeCceeeccC-chHHHhc
Q 000334 1429 IFPLSLEKVIFVDADQVVRAD-MGELYDM 1456 (1646)
Q Consensus 1429 LfP~~vdkVIYLDaD~Iv~~D-l~eL~~l 1456 (1646)
.. ..-+-|+++|+|-+...+ +..+++.
T Consensus 76 ~~-~~g~~v~~ld~Dd~~~~~~l~~~~~~ 103 (214)
T cd04196 76 QA-ADGDYVFFCDQDDIWLPDKLERLLKA 103 (214)
T ss_pred Hh-CCCCEEEEECCCcccChhHHHHHHHH
Confidence 11 257899999999776654 7778876
No 46
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=51.62 E-value=28 Score=36.51 Aligned_cols=43 Identities=12% Similarity=0.042 Sum_probs=36.1
Q ss_pred CCCceEEEEeecCchhHHHHHHHHHHH-HHcCCeeEEEeecCCC
Q 000334 226 ISSRTAILYGALGSDCFKEFHINLVQA-AKEGKVMYVVRPVLPS 268 (1646)
Q Consensus 226 ~~~p~vILYg~i~s~~F~~fh~~L~~~-A~~Gki~YV~R~~~~~ 268 (1646)
.+.++++.|.|+.-+--+.||..+.+. .+.|++++++|++|..
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~p~~ 47 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKEFPIL 47 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEeCCcc
Confidence 355689999999999999999999775 4569999999999754
No 47
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=48.96 E-value=2.8e+02 Score=31.46 Aligned_cols=46 Identities=9% Similarity=-0.071 Sum_probs=36.7
Q ss_pred CChhhhhhhhccchhhHHHHHHHHHHHHhCCCCCCccEEEcceeccC
Q 000334 664 PPQDMLLKLEKEKTFMDQSQESSMFVFKLGLTKLKCCLLMNGLVSES 710 (1646)
Q Consensus 664 ~~~~~~~~~~~~~~~d~~~~~~~~~~~rlgi~~~~p~vlvNG~~~~~ 710 (1646)
...+.++..+.+..+...+....+-.+++||++ .|.++|||+.+-.
T Consensus 135 ld~~~f~~~l~s~~~~~~v~~~~~~a~~~gI~g-tPtfiInGky~v~ 180 (207)
T PRK10954 135 VKGEDYDAAWNSFVVKSLVAQQEKAAADLQLRG-VPAMFVNGKYMVN 180 (207)
T ss_pred CCHHHHHHHHhChHHHHHHHHHHHHHHHcCCCC-CCEEEECCEEEEc
Confidence 445567777888788888888888889999965 6999999998643
No 48
>PRK11204 N-glycosyltransferase; Provisional
Probab=45.26 E-value=1.4e+02 Score=37.51 Aligned_cols=101 Identities=12% Similarity=0.101 Sum_probs=64.8
Q ss_pred eeEEEEeecCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCChhHHHHHHHHHhhcCcEEEEEEecCCcccccccccccH
Q 000334 1338 TINIFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRI 1417 (1646)
Q Consensus 1338 ~InIf~vas~~~ye~~l~v~I~SIl~nt~~~v~F~il~~~lS~~~k~~L~~l~~~~~~~i~~v~~~wp~~L~~~~~~~r~ 1417 (1646)
.+-|+..+. +-+..+..++.|+++.+-.++.++|++|+-+++..+.++.++.++. +++++... + ...+..-
T Consensus 55 ~vsViIp~y--ne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~-~v~~i~~~--~----n~Gka~a 125 (420)
T PRK11204 55 GVSILVPCY--NEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQIP-RLRVIHLA--E----NQGKANA 125 (420)
T ss_pred CEEEEEecC--CCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhCC-cEEEEEcC--C----CCCHHHH
Confidence 466765544 4457788899999875545789999999988888888888876543 34455432 1 1111111
Q ss_pred -HHHHHHHhhcccCCCCCCeEEEEeCceeeccC-chHHHh
Q 000334 1418 -IWAYKILFLDVIFPLSLEKVIFVDADQVVRAD-MGELYD 1455 (1646)
Q Consensus 1418 -~~~y~RLfL~~LfP~~vdkVIYLDaD~Iv~~D-l~eL~~ 1455 (1646)
..+... ...|-++++|+|.+...| +..+.+
T Consensus 126 ln~g~~~--------a~~d~i~~lDaD~~~~~d~L~~l~~ 157 (420)
T PRK11204 126 LNTGAAA--------ARSEYLVCIDGDALLDPDAAAYMVE 157 (420)
T ss_pred HHHHHHH--------cCCCEEEEECCCCCCChhHHHHHHH
Confidence 122221 257999999999988765 455553
No 49
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=45.09 E-value=1.4e+02 Score=32.85 Aligned_cols=97 Identities=14% Similarity=0.074 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcccCCCCCCchhhhhhHHHHHHhhhcCCCCCCChhhhhhhhccchhhHH
Q 000334 602 SSLIIRLFLFIKESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEKEKTFMDQ 681 (1646)
Q Consensus 602 s~~~~~~~~~l~~~~g~~~a~~FL~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 681 (1646)
+....+++++..+. | .....|+..++...-... .+.-+.+.+.+.. +. . ..+.+.+...+.++.+...
T Consensus 85 s~~a~~~~~~a~~~-~-~~~~~~~~~lf~a~~~~~----~~i~~~~~l~~~a-~~----~-Gld~~~~~~~~~~~~~~~~ 152 (192)
T cd03022 85 TLRAMRAALAAQAE-G-DAAEAFARAVFRALWGEG----LDIADPAVLAAVA-AA----A-GLDADELLAAADDPAVKAA 152 (192)
T ss_pred hHHHHHHHHHHHhC-c-hhHHHHHHHHHHHHhCCC----CCCCCHHHHHHHH-HH----c-CCCHHHHHHHcCCHHHHHH
Confidence 44556777776553 4 345566666664321100 1111222233222 21 1 2334456667777788888
Q ss_pred HHHHHHHHHHhCCCCCCccEEEcceeccCc
Q 000334 682 SQESSMFVFKLGLTKLKCCLLMNGLVSESS 711 (1646)
Q Consensus 682 ~~~~~~~~~rlgi~~~~p~vlvNG~~~~~~ 711 (1646)
+++..+-..++|+.+ .|.++|||+.+-..
T Consensus 153 l~~~~~~a~~~gi~g-vPtfvv~g~~~~G~ 181 (192)
T cd03022 153 LRANTEEAIARGVFG-VPTFVVDGEMFWGQ 181 (192)
T ss_pred HHHHHHHHHHcCCCc-CCeEEECCeeeccc
Confidence 888888889999966 69999999987533
No 50
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=45.05 E-value=1.6e+02 Score=30.73 Aligned_cols=88 Identities=19% Similarity=0.163 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEEECCCChhHHHHHHHHHhhcCcEEEEEEecCCcccccccccccHHHHHHHHhhcccC
Q 000334 1351 ERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDVIF 1430 (1646)
Q Consensus 1351 e~~l~v~I~SIl~nt~~~v~F~il~~~lS~~~k~~L~~l~~~~~~~i~~v~~~wp~~L~~~~~~~r~~~~y~RLfL~~Lf 1430 (1646)
...+.-++.|+...+..++.+.|+.++-.+...+.+..... .+.++.-. ... ....+. ..-+...
T Consensus 9 ~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~----~~~~~~~~--~~~-------g~~~a~-n~~~~~~- 73 (166)
T cd04186 9 LEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFP----EVRLIRNG--ENL-------GFGAGN-NQGIREA- 73 (166)
T ss_pred HHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCC----CeEEEecC--CCc-------ChHHHh-hHHHhhC-
Confidence 66788899999987666788999998888777766665432 33333321 111 111111 1112221
Q ss_pred CCCCCeEEEEeCceeeccC-chHHHh
Q 000334 1431 PLSLEKVIFVDADQVVRAD-MGELYD 1455 (1646)
Q Consensus 1431 P~~vdkVIYLDaD~Iv~~D-l~eL~~ 1455 (1646)
+.+-++++|+|.++..+ +..+++
T Consensus 74 --~~~~i~~~D~D~~~~~~~l~~~~~ 97 (166)
T cd04186 74 --KGDYVLLLNPDTVVEPGALLELLD 97 (166)
T ss_pred --CCCEEEEECCCcEECccHHHHHHH
Confidence 57899999999988765 555555
No 51
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=39.61 E-value=3.4e+02 Score=30.10 Aligned_cols=149 Identities=15% Similarity=0.095 Sum_probs=64.4
Q ss_pred EEEcCCCcchHHHHHHHHHH---HhcccceEEEEEeeecccccchhccCCCCCCCcccCCCC-CCcchhHHHHHHHHHHH
Q 000334 538 YVLDPATVCGLEVIDMIMSL---YENHFPLRFGVILYSSKFIKSIEINGGELHSPVAEDDSP-VNEDISSLIIRLFLFIK 613 (1646)
Q Consensus 538 fvIDps~~~~~~~~~~l~~~---v~~~~PiR~GlVp~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~s~~~~~~~~~l~ 613 (1646)
+++||-....+.+=..+..+ +.+. ++|=+||...- +.........+. ....+ .....+.-.+...|.-.
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~--i~~~~i~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~y~a~la~kAA 74 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK--IEFRFIPGGLM--PDINDFMPRMPI---NGDFWRNEPRSSSYPACLAYKAA 74 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT--EEEEEEE--SS---S--SB--H-------TTHHHS--BS--HHHHHHHHHH
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc--EEEEEEEccch--HHHHHHHHhcCC---CHHHhcCCCCCCchHHHHHHHHH
Confidence 57899998877755555554 3333 44444555432 111110000000 00000 00112233344455555
Q ss_pred HhhChHHHHHHHHHHHhhhcccCCCCCCchhhh-hhHHHHHHhhhcCCCCCCChhhhhhhhccchhhHHHHHHHHHHHHh
Q 000334 614 ESHGTQTAFQFLSNVNRLRMESADSADDDALEI-HHVEGAFVETILPKAKTPPQDMLLKLEKEKTFMDQSQESSMFVFKL 692 (1646)
Q Consensus 614 ~~~g~~~a~~FL~~~~~~~~~~~~~~~~~~~~~-~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~rl 692 (1646)
+--|.+.+..||.++-....... . ..+. +.+.+.. +++ ....+.|.+-..++...+....=++..+.+
T Consensus 75 ~~qg~k~~~~fL~~lQ~a~~~~~----~-~~s~~~~l~~iA-~~~-----gLD~~~F~~d~~S~~~~~~~~~D~~la~~m 143 (176)
T PF13743_consen 75 QLQGKKKARRFLRALQEALFLEG----K-NYSDEELLLEIA-EEL-----GLDVEMFKEDLHSDEAKQAFQEDQQLAREM 143 (176)
T ss_dssp HTTT-H--HHHHHHHHHHHHTS--------TTSHHHHHHHH-HHT-----T--HHHHHHHHTSHHHHHHHHHHHHHHHHT
T ss_pred HHhChhhHHHHHHHHHHHHHhcC----C-CCCHHHHHHHHH-HHh-----CCCHHHHHHHHhChHHHHHHHHHHHHHHHc
Confidence 66699999999999875542211 1 1122 3333222 221 233344555555555555666667888899
Q ss_pred CCCCCCccEEEc
Q 000334 693 GLTKLKCCLLMN 704 (1646)
Q Consensus 693 gi~~~~p~vlvN 704 (1646)
||.+.++.|++|
T Consensus 144 ~I~~~Ptlvi~~ 155 (176)
T PF13743_consen 144 GITGFPTLVIFN 155 (176)
T ss_dssp T-SSSSEEEEE-
T ss_pred CCCCCCEEEEEe
Confidence 997755566667
No 52
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=39.60 E-value=3e+02 Score=31.33 Aligned_cols=100 Identities=16% Similarity=0.211 Sum_probs=61.2
Q ss_pred eeEEEEeecCcchHHHHHHHHHHHHhcCCCC--eEEEEEECCCChhHHHHHHHHHhhcCcEEEEEEecCCcccccccccc
Q 000334 1338 TINIFSIASGHLYERFLKIMILSVLKNTCRP--VKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQ 1415 (1646)
Q Consensus 1338 ~InIf~vas~~~ye~~l~v~I~SIl~nt~~~--v~F~il~~~lS~~~k~~L~~l~~~~~~~i~~v~~~wp~~L~~~~~~~ 1415 (1646)
.|=|+..+ ++-+..+..++.|++..+..+ +.+.|+.++-++...+.+..+.+. .+.++... . +.. +.
T Consensus 30 ~isVvip~--~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~v~~i~~~--~---~~g-~~ 98 (251)
T cd06439 30 TVTIIIPA--YNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADK---GVKLLRFP--E---RRG-KA 98 (251)
T ss_pred EEEEEEec--CCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhC---cEEEEEcC--C---CCC-hH
Confidence 35555443 445678889999998765433 788888888888888878777644 34444322 1 111 11
Q ss_pred c-HHHHHHHHhhcccCCCCCCeEEEEeCceeeccC-chHHHhc
Q 000334 1416 R-IIWAYKILFLDVIFPLSLEKVIFVDADQVVRAD-MGELYDM 1456 (1646)
Q Consensus 1416 r-~~~~y~RLfL~~LfP~~vdkVIYLDaD~Iv~~D-l~eL~~l 1456 (1646)
+ ...++.+ . .-|-|+++|+|.+...+ +..|++.
T Consensus 99 ~a~n~gi~~-----a---~~d~i~~lD~D~~~~~~~l~~l~~~ 133 (251)
T cd06439 99 AALNRALAL-----A---TGEIVVFTDANALLDPDALRLLVRH 133 (251)
T ss_pred HHHHHHHHH-----c---CCCEEEEEccccCcCHHHHHHHHHH
Confidence 1 1122221 1 24889999999988754 6667654
No 53
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=36.66 E-value=2.4e+02 Score=31.13 Aligned_cols=96 Identities=14% Similarity=0.144 Sum_probs=58.1
Q ss_pred chHHHHHHHHHHHHhcCCCCeEEEEEECCCChhHHHHHHHHHhhcC-cEEEEEEecCCccccccccccc-HHHHHHHHhh
Q 000334 1349 LYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYG-FEYELITYKWPTWLHKQKEKQR-IIWAYKILFL 1426 (1646)
Q Consensus 1349 ~ye~~l~v~I~SIl~nt~~~v~F~il~~~lS~~~k~~L~~l~~~~~-~~i~~v~~~wp~~L~~~~~~~r-~~~~y~RLfL 1426 (1646)
+.+..+..++.||+..+-.++.+.|+.++-++...+.+..+.+.+. ..+.++... .. . ....+.+ ...++.
T Consensus 11 n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~-~~-~-g~~~~~~~~n~g~~---- 83 (196)
T cd02520 11 GVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGG-EK-V-GINPKVNNLIKGYE---- 83 (196)
T ss_pred CCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecC-Cc-C-CCCHhHHHHHHHHH----
Confidence 4455678889999976545689999998888888888888876653 445444322 11 0 0000101 111221
Q ss_pred cccCCCCCCeEEEEeCceeeccC-chHHHh
Q 000334 1427 DVIFPLSLEKVIFVDADQVVRAD-MGELYD 1455 (1646)
Q Consensus 1427 ~~LfP~~vdkVIYLDaD~Iv~~D-l~eL~~ 1455 (1646)
. ..-+=++++|+|.++..+ |..+..
T Consensus 84 -~---a~~d~i~~~D~D~~~~~~~l~~l~~ 109 (196)
T cd02520 84 -E---ARYDILVISDSDISVPPDYLRRMVA 109 (196)
T ss_pred -h---CCCCEEEEECCCceEChhHHHHHHH
Confidence 1 247899999999987543 344443
No 54
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=32.52 E-value=4.3e+02 Score=31.59 Aligned_cols=133 Identities=13% Similarity=0.135 Sum_probs=65.2
Q ss_pred cCceeEEEEeecC-cchHHHHHHHHHHHHhcCCCCeEEEEEECCCC--hhHHHHHHHHHhhc------Cc---EEEEEEe
Q 000334 1335 HGKTINIFSIASG-HLYERFLKIMILSVLKNTCRPVKFWFIKNYLS--PQFKDVIPHMAQEY------GF---EYELITY 1402 (1646)
Q Consensus 1335 ~~~~InIf~vas~-~~ye~~l~v~I~SIl~nt~~~v~F~il~~~lS--~~~k~~L~~l~~~~------~~---~i~~v~~ 1402 (1646)
..+.|=|++..-+ ..|...+--.|.++ ..-+..|.+.+|.+..+ ....+.|.....+. .. .+.++.-
T Consensus 23 ~~e~VLILtplrna~~~l~~y~~~L~~L-~YP~~lIsLgfLv~d~~e~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~~ 101 (269)
T PF03452_consen 23 NKESVLILTPLRNAASFLPDYFDNLLSL-TYPHELISLGFLVSDSSEFDNTLKILEAALKKLQSHGPESKRFRSITILRK 101 (269)
T ss_pred cCCeEEEEEecCCchHHHHHHHHHHHhC-CCCchheEEEEEcCCCchhHHHHHHHHHHHHHHhccCcccCCcceEEEEcC
Confidence 3466888876533 22322222334444 23335799999998888 55556665443222 11 3333332
Q ss_pred cCCccc----------ccccccccHHHHHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhcCCCCCeeEEeeecC
Q 000334 1403 KWPTWL----------HKQKEKQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCD 1470 (1646)
Q Consensus 1403 ~wp~~L----------~~~~~~~r~~~~y~RLfL~~LfP~~vdkVIYLDaD~Iv~~Dl~eL~~lDl~g~~~aav~d~~ 1470 (1646)
++.... .-|..+.+.++-+.=..|-.-|....+-|++||+|++ .....=+=++=-.++.+ .||.|-
T Consensus 102 df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN~LL~~aL~p~~swVlWlDaDIv-~~P~~lI~dli~~~kdI-ivPn~~ 177 (269)
T PF03452_consen 102 DFGQQLSQDRSERHAFEVQRPRRRAMARARNFLLSSALGPWHSWVLWLDADIV-ETPPTLIQDLIAHDKDI-IVPNCW 177 (269)
T ss_pred CCcccccCchhhccchhhHHHHHHHHHHHHHHHHHhhcCCcccEEEEEecCcc-cCChHHHHHHHhCCCCE-Ecccee
Confidence 322111 1122222222323323344444448999999999997 32222222332234444 477874
No 55
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=32.13 E-value=2.2e+02 Score=31.27 Aligned_cols=94 Identities=13% Similarity=0.083 Sum_probs=56.6
Q ss_pred chHHHHHHHHHHHHhcCCCCeEEEEEECCCChhHHHHHHHHHhhcCcEEEEEEecCCccccccccccc-HHHHHHHHhhc
Q 000334 1349 LYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQR-IIWAYKILFLD 1427 (1646)
Q Consensus 1349 ~ye~~l~v~I~SIl~nt~~~v~F~il~~~lS~~~k~~L~~l~~~~~~~i~~v~~~wp~~L~~~~~~~r-~~~~y~RLfL~ 1427 (1646)
+-+..+.-++.||+..+..+..+.|++++-++...+.+..+...++ +.++... . + ....+ ...+.... +
T Consensus 7 n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~~~~~--i~~~~~~--~---n-~g~~~~~n~~~~~a-~- 76 (202)
T cd04185 7 NRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLGDLDN--IVYLRLP--E---N-LGGAGGFYEGVRRA-Y- 76 (202)
T ss_pred CCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhcCCCc--eEEEECc--c---c-cchhhHHHHHHHHH-h-
Confidence 3456788899999977655678888888877777777777655444 3333321 1 1 11111 11222111 1
Q ss_pred ccCCCCCCeEEEEeCceeeccCch-HHHh
Q 000334 1428 VIFPLSLEKVIFVDADQVVRADMG-ELYD 1455 (1646)
Q Consensus 1428 ~LfP~~vdkVIYLDaD~Iv~~Dl~-eL~~ 1455 (1646)
....|-++++|+|.++..+.- +|.+
T Consensus 77 ---~~~~d~v~~ld~D~~~~~~~l~~l~~ 102 (202)
T cd04185 77 ---ELGYDWIWLMDDDAIPDPDALEKLLA 102 (202)
T ss_pred ---ccCCCEEEEeCCCCCcChHHHHHHHH
Confidence 236899999999998875543 3443
No 56
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=31.73 E-value=3.3e+02 Score=30.66 Aligned_cols=104 Identities=14% Similarity=0.186 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEEECCCChhH-HHHHHHHHhhcCcEEEEEEecCCccccccccccc-HHHHHHHHhhcc
Q 000334 1351 ERFLKIMILSVLKNTCRPVKFWFIKNYLSPQF-KDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQR-IIWAYKILFLDV 1428 (1646)
Q Consensus 1351 e~~l~v~I~SIl~nt~~~v~F~il~~~lS~~~-k~~L~~l~~~~~~~i~~v~~~wp~~L~~~~~~~r-~~~~y~RLfL~~ 1428 (1646)
...+.-++.|+...+-.++.++|++++-++.. .+.+..++++++..+.++... +. ...+.. ...++. .
T Consensus 11 ~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~-~~----~G~~~~a~n~g~~-----~ 80 (236)
T cd06435 11 PEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVE-PL----PGAKAGALNYALE-----R 80 (236)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcC-CC----CCCchHHHHHHHH-----h
Confidence 36788899999865545688888887766553 456667766666666666443 11 111111 112222 2
Q ss_pred cCCCCCCeEEEEeCceeeccC-chHHHhcCCCCCeeEEe
Q 000334 1429 IFPLSLEKVIFVDADQVVRAD-MGELYDMDIKGRPLAYT 1466 (1646)
Q Consensus 1429 LfP~~vdkVIYLDaD~Iv~~D-l~eL~~lDl~g~~~aav 1466 (1646)
.- .+.|=|+++|+|.++..| |.++... +...-+|++
T Consensus 81 a~-~~~d~i~~lD~D~~~~~~~l~~l~~~-~~~~~~~~v 117 (236)
T cd06435 81 TA-PDAEIIAVIDADYQVEPDWLKRLVPI-FDDPRVGFV 117 (236)
T ss_pred cC-CCCCEEEEEcCCCCcCHHHHHHHHHH-hcCCCeeEE
Confidence 22 246889999999877643 4444433 222334544
No 57
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=29.75 E-value=4.1e+02 Score=31.57 Aligned_cols=152 Identities=16% Similarity=0.217 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHhcC-CCCeEEEEEECCCChhHHHHHHHHHhhcCcEEEEEEecCCc-ccccccccccHHHHHHHHhhccc
Q 000334 1352 RFLKIMILSVLKNT-CRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPT-WLHKQKEKQRIIWAYKILFLDVI 1429 (1646)
Q Consensus 1352 ~~l~v~I~SIl~nt-~~~v~F~il~~~lS~~~k~~L~~l~~~~~~~i~~v~~~wp~-~L~~~~~~~r~~~~y~RLfL~~L 1429 (1646)
+-+.-++.|+.... ...+.+.|++++-++++.+.|..+++.+++.. ++...-+. .+... +.|- .+. ..
T Consensus 17 ~~l~~~l~~l~~~~~~~~~eiIvvd~~s~~~~~~~l~~~~~~~~~~~-~i~~~~~~~~f~~a--~arN-~g~------~~ 86 (281)
T PF10111_consen 17 ERLRNCLESLSQFQSDPDFEIIVVDDGSSDEFDEELKKLCEKNGFIR-YIRHEDNGEPFSRA--KARN-IGA------KY 86 (281)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEEECCCchhHHHHHHHHHhccCceE-EEEcCCCCCCcCHH--HHHH-HHH------HH
Confidence 33444566666533 35788988888888888888989888766552 22222111 11110 0110 111 11
Q ss_pred CCCCCCeEEEEeCceeeccCc-hHHHh----cCCCCCeeEEeeec---C--CCCccCC-cccccccccccccC------C
Q 000334 1430 FPLSLEKVIFVDADQVVRADM-GELYD----MDIKGRPLAYTPFC---D--NNKDMDG-YRFWRQGFWKDHLR------G 1492 (1646)
Q Consensus 1430 fP~~vdkVIYLDaD~Iv~~Dl-~eL~~----lDl~g~~~aav~d~---~--s~~~~~g-~~fw~~gyw~~~l~------~ 1492 (1646)
..-+-|+++|+|+++.-|. ..+.+ ++-+...+.+.|-- . +..-... ...|.......... +
T Consensus 87 --A~~d~l~flD~D~i~~~~~i~~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (281)
T PF10111_consen 87 --ARGDYLIFLDADCIPSPDFIEKLLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLESFISGKNSLWE 164 (281)
T ss_pred --cCCCEEEEEcCCeeeCHHHHHHHHHHHHHHhcCCCceEEEeeeeccchhhHHHhhcchhcchHHHHHHHhhccccccc
Confidence 1578999999999987554 44555 44444344444421 1 0000011 11222222222221 1
Q ss_pred CCeeecceeeeeHHHHHhhcHHH
Q 000334 1493 RPYHISALYVVDLKRFRETAAGD 1515 (1646)
Q Consensus 1493 ~~YfNSGvlliNL~~~R~~~~~d 1515 (1646)
..++.+|.++|+-..|.+.+..|
T Consensus 165 ~~~~~s~~~~i~r~~f~~iGGfD 187 (281)
T PF10111_consen 165 FIAFASSCFLINREDFLEIGGFD 187 (281)
T ss_pred cccccceEEEEEHHHHHHhCCCC
Confidence 34677899999999999986433
No 58
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=29.59 E-value=3.8e+02 Score=29.90 Aligned_cols=97 Identities=16% Similarity=0.278 Sum_probs=55.7
Q ss_pred eEEEEeecCcchHHHHHHHHHHHHhcCCCC--eEEEEEECCCChhHHHHHHHHHhhcCcEEEEEEecCCccccccccccc
Q 000334 1339 INIFSIASGHLYERFLKIMILSVLKNTCRP--VKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQR 1416 (1646)
Q Consensus 1339 InIf~vas~~~ye~~l~v~I~SIl~nt~~~--v~F~il~~~lS~~~k~~L~~l~~~~~~~i~~v~~~wp~~L~~~~~~~r 1416 (1646)
|=|+..+.+. -...+..++.|++.-+-.+ +.+.|++++-++...+.+..+...+. +.++... . +...+..
T Consensus 3 vsviip~~n~-~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~--~~~~~~~--~---~~~~~~~ 74 (234)
T cd06421 3 VDVFIPTYNE-PLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGVEYG--YRYLTRP--D---NRHAKAG 74 (234)
T ss_pred eEEEEecCCC-cHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhcccC--ceEEEeC--C---CCCCcHH
Confidence 3344433332 2356778899999755444 78888888877777777777765442 2233221 1 1111111
Q ss_pred -HHHHHHHHhhcccCCCCCCeEEEEeCceeeccCch
Q 000334 1417 -IIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMG 1451 (1646)
Q Consensus 1417 -~~~~y~RLfL~~LfP~~vdkVIYLDaD~Iv~~Dl~ 1451 (1646)
...+... ..-+-|+++|+|.++..|.-
T Consensus 75 ~~n~~~~~--------a~~d~i~~lD~D~~~~~~~l 102 (234)
T cd06421 75 NLNNALAH--------TTGDFVAILDADHVPTPDFL 102 (234)
T ss_pred HHHHHHHh--------CCCCEEEEEccccCcCccHH
Confidence 1122221 15799999999998865533
No 59
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=28.45 E-value=73 Score=35.78 Aligned_cols=96 Identities=16% Similarity=0.192 Sum_probs=52.1
Q ss_pred chHHHHHHHHHHHHhcCCCCeEEEEEECCCChhHHHHHHHHHhhcCc-EEEEEEecCCcccccccccccHHHHHHHHhhc
Q 000334 1349 LYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGF-EYELITYKWPTWLHKQKEKQRIIWAYKILFLD 1427 (1646)
Q Consensus 1349 ~ye~~l~v~I~SIl~nt~~~v~F~il~~~lS~~~k~~L~~l~~~~~~-~i~~v~~~wp~~L~~~~~~~r~~~~y~RLfL~ 1427 (1646)
+-...+.-++.|++..+-.+++++|+.+.-+++..+.++.++..+.. .++++.-. .... ...+.+-+ ...+.
T Consensus 11 ~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~--~~~g-~~~k~~a~----n~~~~ 83 (228)
T PF13641_consen 11 NEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRP--RNPG-PGGKARAL----NEALA 83 (228)
T ss_dssp S-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE------HH-HHHHHHHH----HHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecC--CCCC-cchHHHHH----HHHHH
Confidence 33457778999999643357999999988777777888888776643 45555432 1010 01111111 11112
Q ss_pred ccCCCCCCeEEEEeCceeeccC-chHHH
Q 000334 1428 VIFPLSLEKVIFVDADQVVRAD-MGELY 1454 (1646)
Q Consensus 1428 ~LfP~~vdkVIYLDaD~Iv~~D-l~eL~ 1454 (1646)
.. ..+-|+++|+|.++..| |.++.
T Consensus 84 ~~---~~d~i~~lD~D~~~~p~~l~~~~ 108 (228)
T PF13641_consen 84 AA---RGDYILFLDDDTVLDPDWLERLL 108 (228)
T ss_dssp H------SEEEEE-SSEEE-CHHHHHHH
T ss_pred hc---CCCEEEEECCCcEECHHHHHHHH
Confidence 21 37899999999988543 44444
No 60
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=27.65 E-value=1.1e+02 Score=32.81 Aligned_cols=54 Identities=15% Similarity=0.247 Sum_probs=36.2
Q ss_pred EEEEEeccCCC-CCCCCeEEEEecCCCC--cccceEEEecceeeee-----eeCCceeEEEe
Q 000334 1181 VLTGHCSEKDH-EPPQGLQLILGTKSTP--HLVDTLVMANLGYWQM-----KVSPGVWYLQL 1234 (1646)
Q Consensus 1181 liEGha~d~~~-~pprGlqL~L~t~~~~--~~~DTiVManlGYfQl-----ka~PG~w~l~l 1234 (1646)
.|.||..|..+ .|..|+++.|....+. ....+.+=.+-|-|.+ ...||.|.|..
T Consensus 28 ~Is~HVLDt~~G~PA~gV~V~L~~~~~~~w~~l~~~~Td~dGR~~~l~~~~~~~~G~Y~L~F 89 (137)
T PRK15036 28 ILSVHILNQQTGKPAADVTVTLEKKADNGWLQLNTAKTDKDGRIKALWPEQTATTGDYRVVF 89 (137)
T ss_pred CeEEEEEeCCCCcCCCCCEEEEEEccCCceEEEEEEEECCCCCCccccCcccCCCeeEEEEE
Confidence 49999999987 9999999999754321 1112233334488875 24577777775
No 61
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=27.05 E-value=3.3e+02 Score=34.73 Aligned_cols=101 Identities=15% Similarity=0.089 Sum_probs=64.1
Q ss_pred ceeEEEEeecCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCChhHHHHHHHHHhhcCcEEEEEEecCCccccccccccc
Q 000334 1337 KTINIFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQR 1416 (1646)
Q Consensus 1337 ~~InIf~vas~~~ye~~l~v~I~SIl~nt~~~v~F~il~~~lS~~~k~~L~~l~~~~~~~i~~v~~~wp~~L~~~~~~~r 1416 (1646)
..+-|+..+. +-+..+..+|.|+++.+-.++.+.+++|+-+++..+.+.++..++. .++++... . ++ .+..
T Consensus 75 p~vsViIP~y--NE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~-~v~vv~~~--~---n~-Gka~ 145 (444)
T PRK14583 75 PLVSILVPCF--NEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAEDP-RLRVIHLA--H---NQ-GKAI 145 (444)
T ss_pred CcEEEEEEeC--CCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhCC-CEEEEEeC--C---CC-CHHH
Confidence 3466765544 4456678899999876545689999999888888888888876553 34444332 1 11 1111
Q ss_pred H-HHHHHHHhhcccCCCCCCeEEEEeCceeeccC-chHHH
Q 000334 1417 I-IWAYKILFLDVIFPLSLEKVIFVDADQVVRAD-MGELY 1454 (1646)
Q Consensus 1417 ~-~~~y~RLfL~~LfP~~vdkVIYLDaD~Iv~~D-l~eL~ 1454 (1646)
- ..+... ...|-++.+|+|.+...| +..+.
T Consensus 146 AlN~gl~~--------a~~d~iv~lDAD~~~~~d~L~~lv 177 (444)
T PRK14583 146 ALRMGAAA--------ARSEYLVCIDGDALLDKNAVPYLV 177 (444)
T ss_pred HHHHHHHh--------CCCCEEEEECCCCCcCHHHHHHHH
Confidence 1 112211 257999999999998765 44454
No 62
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=26.94 E-value=3.1e+02 Score=30.43 Aligned_cols=96 Identities=10% Similarity=0.067 Sum_probs=54.3
Q ss_pred chHHHHHHHHHHHHhcCCCC--eEEEEEECCCChhHHHHHHHHHhhcCcEEEEEEecCCcccccccccccHHHHHHHHhh
Q 000334 1349 LYERFLKIMILSVLKNTCRP--VKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFL 1426 (1646)
Q Consensus 1349 ~ye~~l~v~I~SIl~nt~~~--v~F~il~~~lS~~~k~~L~~l~~~~~~~i~~v~~~wp~~L~~~~~~~r~~~~y~RLfL 1426 (1646)
+....+.-+|.||+..+..+ +.++|++++-++...+.+.......+..+..+... . .... ....+..+ -+
T Consensus 7 n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~v~~~~~~--~--~~~~---g~~~a~n~-g~ 78 (229)
T cd04192 7 NEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQLKILNNS--R--VSIS---GKKNALTT-AI 78 (229)
T ss_pred CcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHhCCCcceEEeecc--C--cccc---hhHHHHHH-HH
Confidence 45677888999998876655 88888988877766666651222223444444322 1 1111 11011111 11
Q ss_pred cccCCCCCCeEEEEeCceeeccC-chHHHh
Q 000334 1427 DVIFPLSLEKVIFVDADQVVRAD-MGELYD 1455 (1646)
Q Consensus 1427 ~~LfP~~vdkVIYLDaD~Iv~~D-l~eL~~ 1455 (1646)
.. ..-+-|+++|+|.++..| |..+..
T Consensus 79 ~~---~~~d~i~~~D~D~~~~~~~l~~l~~ 105 (229)
T cd04192 79 KA---AKGDWIVTTDADCVVPSNWLLTFVA 105 (229)
T ss_pred HH---hcCCEEEEECCCcccCHHHHHHHHH
Confidence 11 147899999999987654 444444
No 63
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=26.00 E-value=4.4e+02 Score=28.31 Aligned_cols=147 Identities=14% Similarity=0.026 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHhc---CCCCeEEEEEECCCChhHHHHHHHHHhhcCcEEEEEEecCCcccccccccccHHHHHHHHhhc
Q 000334 1351 ERFLKIMILSVLKN---TCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLD 1427 (1646)
Q Consensus 1351 e~~l~v~I~SIl~n---t~~~v~F~il~~~lS~~~k~~L~~l~~~~~~~i~~v~~~wp~~L~~~~~~~r~~~~y~RLfL~ 1427 (1646)
+..+..++.|+... +..++.+.|+.++-++...+.++.+..++. .+.++... . +. ....++.+. +.
T Consensus 9 ~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~-~i~~i~~~-~----n~----G~~~a~n~g-~~ 77 (181)
T cd04187 9 EENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELAARDP-RVKVIRLS-R----NF----GQQAALLAG-LD 77 (181)
T ss_pred hhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHhhCC-CEEEEEec-C----CC----CcHHHHHHH-HH
Confidence 34455555555443 334678888888888888877777765543 44444432 1 11 111122111 11
Q ss_pred ccCCCCCCeEEEEeCceeecc-CchHHHhcCCCCCeeEEeeecCCCCccCCcccccccccc--cc-c-CCCCeeecceee
Q 000334 1428 VIFPLSLEKVIFVDADQVVRA-DMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWK--DH-L-RGRPYHISALYV 1502 (1646)
Q Consensus 1428 ~LfP~~vdkVIYLDaD~Iv~~-Dl~eL~~lDl~g~~~aav~d~~s~~~~~g~~fw~~gyw~--~~-l-~~~~YfNSGvll 1502 (1646)
.. .-+-|+++|+|..... .+..++.. +....-++...+.........++....+.. .. . .......++.++
T Consensus 78 ~a---~~d~i~~~D~D~~~~~~~l~~l~~~-~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (181)
T cd04187 78 HA---RGDAVITMDADLQDPPELIPEMLAK-WEEGYDVVYGVRKNRKESWLKRLTSKLFYRLINKLSGVDIPDNGGDFRL 153 (181)
T ss_pred hc---CCCEEEEEeCCCCCCHHHHHHHHHH-HhCCCcEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCCCCCCCCEEE
Confidence 21 2488999999987654 47777766 332211222222111100001111111110 01 1 123566788888
Q ss_pred eeHHHHHhhc
Q 000334 1503 VDLKRFRETA 1512 (1646)
Q Consensus 1503 iNL~~~R~~~ 1512 (1646)
+.-+.+++..
T Consensus 154 ~~r~~~~~i~ 163 (181)
T cd04187 154 MDRKVVDALL 163 (181)
T ss_pred EcHHHHHHHH
Confidence 8888887754
No 64
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=25.86 E-value=3.9e+02 Score=31.08 Aligned_cols=38 Identities=5% Similarity=-0.060 Sum_probs=30.7
Q ss_pred cceEEEEcCCCcchHHHHHHHHHHHhcccceEEEEEee
Q 000334 534 FHAVYVLDPATVCGLEVIDMIMSLYENHFPLRFGVILY 571 (1646)
Q Consensus 534 ~nlVfvIDps~~~~~~~~~~l~~~v~~~~PiR~GlVp~ 571 (1646)
..++.+.||..+--.++...+..+.+.|+=+|+=.+|+
T Consensus 109 ~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~ 146 (232)
T PRK10877 109 HVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPR 146 (232)
T ss_pred EEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccC
Confidence 45899999999999888888888888887777744454
No 65
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=25.67 E-value=4.5e+02 Score=28.03 Aligned_cols=95 Identities=14% Similarity=0.211 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHHhcCCCCeEEEEEECCCChhHHHHHHHHHhhcCcEEEEEEecCCcccccccccccHHHHHHHHhhccc
Q 000334 1350 YERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDVI 1429 (1646)
Q Consensus 1350 ye~~l~v~I~SIl~nt~~~v~F~il~~~lS~~~k~~L~~l~~~~~~~i~~v~~~wp~~L~~~~~~~r~~~~y~RLfL~~L 1429 (1646)
-...+.-+|.|+...+..++.+.|+++.-++...+.+..+...+...+..+.-. +. ..+...+.-+- + .
T Consensus 8 ~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~n~g-~-~- 76 (182)
T cd06420 8 RPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQE-DE-------GFRKAKIRNKA-I-A- 76 (182)
T ss_pred ChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcC-Cc-------chhHHHHHHHH-H-H-
Confidence 456788899999987766788999988888877777777765443333222111 11 00110111111 1 1
Q ss_pred CCCCCCeEEEEeCceeeccC-chHHHhc
Q 000334 1430 FPLSLEKVIFVDADQVVRAD-MGELYDM 1456 (1646)
Q Consensus 1430 fP~~vdkVIYLDaD~Iv~~D-l~eL~~l 1456 (1646)
. ..-+-|++||+|.+...+ +..+.+.
T Consensus 77 ~-a~g~~i~~lD~D~~~~~~~l~~~~~~ 103 (182)
T cd06420 77 A-AKGDYLIFIDGDCIPHPDFIADHIEL 103 (182)
T ss_pred H-hcCCEEEEEcCCcccCHHHHHHHHHH
Confidence 1 146899999999988765 5555544
No 66
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=25.63 E-value=5.3e+02 Score=28.08 Aligned_cols=83 Identities=17% Similarity=0.253 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEEECCC-ChhHHHHHHHHHhhcCcEEEEEEecCCcccccccccccHHHHHHHHhhcccC
Q 000334 1352 RFLKIMILSVLKNTCRPVKFWFIKNYL-SPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDVIF 1430 (1646)
Q Consensus 1352 ~~l~v~I~SIl~nt~~~v~F~il~~~l-S~~~k~~L~~l~~~~~~~i~~v~~~wp~~L~~~~~~~r~~~~y~RLfL~~Lf 1430 (1646)
.++..++.||+..+-.+..+.|+.++- ++...+.+..+.++++ +.++... . + .....+.-.-+. .
T Consensus 13 ~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~--i~~i~~~--~---n----~G~~~a~N~g~~---~ 78 (201)
T cd04195 13 EFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLP--LKVVPLE--K---N----RGLGKALNEGLK---H 78 (201)
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcCC--eEEEEcC--c---c----ccHHHHHHHHHH---h
Confidence 578899999998765567777777776 5556666777776665 5555432 1 0 111111111111 1
Q ss_pred CCCCCeEEEEeCceeeccC
Q 000334 1431 PLSLEKVIFVDADQVVRAD 1449 (1646)
Q Consensus 1431 P~~vdkVIYLDaD~Iv~~D 1449 (1646)
..-+=|+++|+|.+...+
T Consensus 79 -a~gd~i~~lD~Dd~~~~~ 96 (201)
T cd04195 79 -CTYDWVARMDTDDISLPD 96 (201)
T ss_pred -cCCCEEEEeCCccccCcH
Confidence 257889999999876643
No 67
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=25.60 E-value=5.8e+02 Score=28.03 Aligned_cols=97 Identities=14% Similarity=0.106 Sum_probs=54.9
Q ss_pred cchHHHHHHHHHHHHhcCCCCeEEEEEECCCChhHHHHHHHHHhhcCcEEEEEEecCCccccccccccc-HHHHHHHHhh
Q 000334 1348 HLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQR-IIWAYKILFL 1426 (1646)
Q Consensus 1348 ~~ye~~l~v~I~SIl~nt~~~v~F~il~~~lS~~~k~~L~~l~~~~~~~i~~v~~~wp~~L~~~~~~~r-~~~~y~RLfL 1426 (1646)
.+-+..+.-+|.||+.-+ .++.++|++++-++...+.++ +. .....+.++...++. ....+.. ..+++.+..-
T Consensus 6 ~Ne~~~l~~~l~sl~~~~-~~~eIivvdd~S~D~t~~~~~-~~-~~~~~v~~i~~~~~~---~~~Gk~~aln~g~~~~~~ 79 (191)
T cd06436 6 LNEEAVIQRTLASLLRNK-PNFLVLVIDDASDDDTAGIVR-LA-ITDSRVHLLRRHLPN---ARTGKGDALNAAYDQIRQ 79 (191)
T ss_pred cccHHHHHHHHHHHHhCC-CCeEEEEEECCCCcCHHHHHh-he-ecCCcEEEEeccCCc---CCCCHHHHHHHHHHHHhh
Confidence 455678889999999766 568899999888888777776 22 122345555433221 0111111 1133332211
Q ss_pred cc---cCCCCCCeEEEEeCceeeccCc
Q 000334 1427 DV---IFPLSLEKVIFVDADQVVRADM 1450 (1646)
Q Consensus 1427 ~~---LfP~~vdkVIYLDaD~Iv~~Dl 1450 (1646)
+. =.+..-+-|+++|+|.++..+.
T Consensus 80 ~~~~~g~~~~~d~v~~~DaD~~~~~~~ 106 (191)
T cd06436 80 ILIEEGADPERVIIAVIDADGRLDPNA 106 (191)
T ss_pred hccccccCCCccEEEEECCCCCcCHhH
Confidence 10 0111246799999999876554
No 68
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=23.77 E-value=1.7e+02 Score=33.80 Aligned_cols=79 Identities=25% Similarity=0.321 Sum_probs=48.3
Q ss_pred cchH-HHHHHHHHHHHhcCC----------CCeEEEEEECCCChhHHHHHHHHHhhcCcEEEEEEecCCccccccccccc
Q 000334 1348 HLYE-RFLKIMILSVLKNTC----------RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQR 1416 (1646)
Q Consensus 1348 ~~ye-~~l~v~I~SIl~nt~----------~~v~F~il~~~lS~~~k~~L~~l~~~~~~~i~~v~~~wp~~L~~~~~~~r 1416 (1646)
+|.+ ..+.-+|.||+...- ..+.++|+.|+.++ .+ ......
T Consensus 6 yNE~~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~d---------------------~~------~gk~~~- 57 (244)
T cd04190 6 YNEDEEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAIK---------------------KN------RGKRDS- 57 (244)
T ss_pred ecCCHHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCccc---------------------cc------CcchHH-
Confidence 4553 678889999987543 26888999888887 01 000000
Q ss_pred HHHHHHHHhhcccCCCCCCeEEEEeCceeeccC-chHHHh
Q 000334 1417 IIWAYKILFLDVIFPLSLEKVIFVDADQVVRAD-MGELYD 1455 (1646)
Q Consensus 1417 ~~~~y~RLfL~~LfP~~vdkVIYLDaD~Iv~~D-l~eL~~ 1455 (1646)
..|. .+.+...+.-..-+-|+++|+|.++..| |..++.
T Consensus 58 ~~~~-~~~~~~~~~~a~~e~i~~~DaD~~~~~~~l~~l~~ 96 (244)
T cd04190 58 QLWF-FNYFCRVLFPDDPEFILLVDADTKFDPDSIVQLYK 96 (244)
T ss_pred HHHH-HHHHHHHhhcCCCCEEEEECCCCcCCHhHHHHHHH
Confidence 1121 1222222323468999999999999877 566663
No 69
>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=23.18 E-value=39 Score=41.51 Aligned_cols=18 Identities=22% Similarity=0.582 Sum_probs=16.7
Q ss_pred EEEeCceeeccCchHHHh
Q 000334 1438 IFVDADQVVRADMGELYD 1455 (1646)
Q Consensus 1438 IYLDaD~Iv~~Dl~eL~~ 1455 (1646)
||||+|+||.+++..|-|
T Consensus 242 vYLDTDvIvLksl~~l~N 259 (409)
T KOG1928|consen 242 VYLDTDVIVLKSLSNLRN 259 (409)
T ss_pred EEeeccEEEecccccccc
Confidence 899999999999999864
No 70
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=23.07 E-value=3.5e+02 Score=33.42 Aligned_cols=108 Identities=19% Similarity=0.191 Sum_probs=61.7
Q ss_pred eEEEEeecCcchHHHHHHHHHHHHhcC--CCCeEEEEEECCCChhHHHHHHHHHhhcCcEEEEEEecCCcc-ccccc---
Q 000334 1339 INIFSIASGHLYERFLKIMILSVLKNT--CRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTW-LHKQK--- 1412 (1646)
Q Consensus 1339 InIf~vas~~~ye~~l~v~I~SIl~nt--~~~v~F~il~~~lS~~~k~~L~~l~~~~~~~i~~v~~~wp~~-L~~~~--- 1412 (1646)
+.|+.+|++ -..++.-+|.||+++. ..+..++|..|+-.++..+.+. .++..+..+. .+.. ..+..
T Consensus 2 ~PVlv~ayN--Rp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~----~~~~~i~~i~--~~~~~~~~~~~~~ 73 (334)
T cd02514 2 IPVLVIACN--RPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAK----SFGDGVTHIQ--HPPISIKNVNPPH 73 (334)
T ss_pred cCEEEEecC--CHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHH----hhccccEEEE--cccccccccCccc
Confidence 456555664 3567888999999874 3578899998886665444333 3333333222 1211 11100
Q ss_pred --ccccHHHHHHHHhhcccCCC-CCCeEEEEeCceeeccCchHHH
Q 000334 1413 --EKQRIIWAYKILFLDVIFPL-SLEKVIFVDADQVVRADMGELY 1454 (1646)
Q Consensus 1413 --~~~r~~~~y~RLfL~~LfP~-~vdkVIYLDaD~Iv~~Dl~eL~ 1454 (1646)
..-..++..++.-+..+|-. +.++||.||.|.++--|.-+.+
T Consensus 74 ~~~~y~~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf 118 (334)
T cd02514 74 KFQGYYRIARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYF 118 (334)
T ss_pred ccchhhHHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHH
Confidence 00011233333445555521 4899999999999888855444
No 71
>PRK06437 hypothetical protein; Provisional
Probab=22.99 E-value=69 Score=29.88 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=18.9
Q ss_pred HHHHhCCCCCCcEEEEcCEEec
Q 000334 937 LHRQLGVESGANAVITNGRVTF 958 (1646)
Q Consensus 937 ~~~~~~l~~g~~~vv~NGR~i~ 958 (1646)
+.+.||+++...++.+||++++
T Consensus 26 LL~~Lgi~~~~vaV~vNg~iv~ 47 (67)
T PRK06437 26 IIKDLGLDEEEYVVIVNGSPVL 47 (67)
T ss_pred HHHHcCCCCccEEEEECCEECC
Confidence 3456799999999999999998
No 72
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=22.69 E-value=1e+02 Score=29.10 Aligned_cols=38 Identities=21% Similarity=0.120 Sum_probs=32.9
Q ss_pred EEEEeecCchhHHHHHHHHHHH--HHcCCeeEEEeecCCC
Q 000334 231 AILYGALGSDCFKEFHINLVQA--AKEGKVMYVVRPVLPS 268 (1646)
Q Consensus 231 vILYg~i~s~~F~~fh~~L~~~--A~~Gki~YV~R~~~~~ 268 (1646)
+++|.|+..+--..+|+.|.+. ...+++++++||++..
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 40 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLL 40 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccC
Confidence 4789999999999999999877 5679999999999876
No 73
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=22.48 E-value=5.7e+02 Score=34.76 Aligned_cols=121 Identities=12% Similarity=0.079 Sum_probs=69.0
Q ss_pred ceeEEEEeecCcchH---HHHHHHHHHHHhcCC-CCeEEEEEECCCChhHHH----HHHHHHhhcCc--EEEEEEecCCc
Q 000334 1337 KTINIFSIASGHLYE---RFLKIMILSVLKNTC-RPVKFWFIKNYLSPQFKD----VIPHMAQEYGF--EYELITYKWPT 1406 (1646)
Q Consensus 1337 ~~InIf~vas~~~ye---~~l~v~I~SIl~nt~-~~v~F~il~~~lS~~~k~----~L~~l~~~~~~--~i~~v~~~wp~ 1406 (1646)
..+-|+.-++|+.-+ ..+..++.|+..... .++.|++++|.-+++... .+..++++++. .+.+..-.+
T Consensus 124 ~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R~~-- 201 (691)
T PRK05454 124 ARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAELGGEGRIFYRRRRR-- 201 (691)
T ss_pred CceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEEEECCc--
Confidence 346676556664433 357778889986433 579999999887766432 35567777643 333322111
Q ss_pred ccccccccccHHHHHHHHhhcccCCCCCCeEEEEeCceeeccC-chHHHhcCCCCCeeEEee
Q 000334 1407 WLHKQKEKQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRAD-MGELYDMDIKGRPLAYTP 1467 (1646)
Q Consensus 1407 ~L~~~~~~~r~~~~y~RLfL~~LfP~~vdkVIYLDaD~Iv~~D-l~eL~~lDl~g~~~aav~ 1467 (1646)
+...|..-+..+.+.+ -..+|-|+.+|+|.+...| +..+...-..+--+|++.
T Consensus 202 ---n~~~KaGNl~~~~~~~-----~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~vGlVQ 255 (691)
T PRK05454 202 ---NVGRKAGNIADFCRRW-----GGAYDYMVVLDADSLMSGDTLVRLVRLMEANPRAGLIQ 255 (691)
T ss_pred ---CCCccHHHHHHHHHhc-----CCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcCEEEEe
Confidence 1111222222222221 1368999999999999987 566664322233466664
No 74
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=22.29 E-value=5.3e+02 Score=31.99 Aligned_cols=103 Identities=13% Similarity=0.132 Sum_probs=62.2
Q ss_pred eeEEEEeecCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCChhHHHHHHHHHhhc-CcEEEEEEecCCccccccccccc
Q 000334 1338 TINIFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEY-GFEYELITYKWPTWLHKQKEKQR 1416 (1646)
Q Consensus 1338 ~InIf~vas~~~ye~~l~v~I~SIl~nt~~~v~F~il~~~lS~~~k~~L~~l~~~~-~~~i~~v~~~wp~~L~~~~~~~r 1416 (1646)
.+-|+.-+ ++-+..+.-++.|++..+-..+.+.+..+.-++...+.++.+.+.+ +..++++. . +. + .....
T Consensus 42 ~VSViiP~--~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~-~-~~---~-~G~~~ 113 (373)
T TIGR03472 42 PVSVLKPL--HGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVI-D-AR---R-HGPNR 113 (373)
T ss_pred CeEEEEEC--CCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEE-C-CC---C-CCCCh
Confidence 36665433 4557778899999997654458888777776766677788877665 35666652 2 11 0 00111
Q ss_pred HHHHHHHHhhcccCCCCCCeEEEEeCceeeccCchH
Q 000334 1417 IIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGE 1452 (1646)
Q Consensus 1417 ~~~~y~RLfL~~LfP~~vdkVIYLDaD~Iv~~Dl~e 1452 (1646)
..++.... +.. ..-|-++++|+|+++..|--+
T Consensus 114 K~~~l~~~-~~~---a~ge~i~~~DaD~~~~p~~L~ 145 (373)
T TIGR03472 114 KVSNLINM-LPH---ARHDILVIADSDISVGPDYLR 145 (373)
T ss_pred HHHHHHHH-HHh---ccCCEEEEECCCCCcChhHHH
Confidence 11222222 222 257899999999988765433
No 75
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=21.96 E-value=7.1e+02 Score=27.82 Aligned_cols=106 Identities=11% Similarity=0.181 Sum_probs=61.0
Q ss_pred eEEEEeecCcchH-HHHHHHHHHHHhcCCCCeEEEEEECCCChhHHHHHHHHHhhcCcEEEEEEecCCccccccccccc-
Q 000334 1339 INIFSIASGHLYE-RFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQR- 1416 (1646)
Q Consensus 1339 InIf~vas~~~ye-~~l~v~I~SIl~nt~~~v~F~il~~~lS~~~k~~L~~l~~~~~~~i~~v~~~wp~~L~~~~~~~r- 1416 (1646)
|-|+..+.+ -. ..+..+|.|+...+ ++.++|+.++-++...+.+...... ..+..+.-. ...+..
T Consensus 2 isVvIp~~n--e~~~~l~~~l~sl~~q~--~~eiivvdd~s~d~~~~~l~~~~~~--~~~~v~~~~-------~~g~~~a 68 (235)
T cd06434 2 VTVIIPVYD--EDPDVFRECLRSILRQK--PLEIIVVTDGDDEPYLSILSQTVKY--GGIFVITVP-------HPGKRRA 68 (235)
T ss_pred eEEEEeecC--CChHHHHHHHHHHHhCC--CCEEEEEeCCCChHHHHHHHhhccC--CcEEEEecC-------CCChHHH
Confidence 345444443 34 77888999999877 7889999988887777666433221 222222211 111111
Q ss_pred HHHHHHHHhhcccCCCCCCeEEEEeCceeeccC-chHHHhcCCCCCeeEEe
Q 000334 1417 IIWAYKILFLDVIFPLSLEKVIFVDADQVVRAD-MGELYDMDIKGRPLAYT 1466 (1646)
Q Consensus 1417 ~~~~y~RLfL~~LfP~~vdkVIYLDaD~Iv~~D-l~eL~~lDl~g~~~aav 1466 (1646)
...++.+ ..-|-|+++|+|.++..| |..|...=.+ .-+|++
T Consensus 69 ~n~g~~~--------a~~d~v~~lD~D~~~~~~~l~~l~~~~~~-~~v~~v 110 (235)
T cd06434 69 LAEGIRH--------VTTDIVVLLDSDTVWPPNALPEMLKPFED-PKVGGV 110 (235)
T ss_pred HHHHHHH--------hCCCEEEEECCCceeChhHHHHHHHhccC-CCEeEE
Confidence 1122221 157999999999999876 6666633223 334444
No 76
>PF12633 Adenyl_cycl_N: Adenylate cyclase NT domain; InterPro: IPR024685 Adenylate cyclase is the enzyme responsible for the synthesis of cAMP from ATP. On the basis of sequence similarity, it has been proposed that there are three different classes of adenylate cyclases [, ]. Class I cyclases are found in enterobacteria and related Gram-negative bacteria. This entry represents the N-terminal domain of class-I adenylate cyclases.
Probab=21.74 E-value=1.2e+02 Score=34.80 Aligned_cols=53 Identities=15% Similarity=0.331 Sum_probs=41.3
Q ss_pred HHHHHHhcCCCCeEEEEEE-CCCChhHHHHH-------HHHHhhcCcEEEEEEecCCccccc
Q 000334 1357 MILSVLKNTCRPVKFWFIK-NYLSPQFKDVI-------PHMAQEYGFEYELITYKWPTWLHK 1410 (1646)
Q Consensus 1357 ~I~SIl~nt~~~v~F~il~-~~lS~~~k~~L-------~~l~~~~~~~i~~v~~~wp~~L~~ 1410 (1646)
++-||=.+.++.+.+||.+ +.++++-++.| .++++.+|++++|+-++ +..++.
T Consensus 105 S~gSi~Qs~~SDlDiWvCh~~~L~~~~~~~Lq~K~~~i~~WA~~~gvEv~FfLmd-~~~fr~ 165 (204)
T PF12633_consen 105 STGSIGQSSSSDLDIWVCHDSDLSPEERQLLQQKCDLIEQWAASFGVEVHFFLMD-EERFRH 165 (204)
T ss_pred CCccccCCCCCCCeEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHcCCEEEEEEEC-HHHHhc
Confidence 3456777777899999988 78998877654 45568899999999998 666654
No 77
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=21.46 E-value=1.7e+02 Score=36.60 Aligned_cols=53 Identities=11% Similarity=0.206 Sum_probs=39.8
Q ss_pred eEEEEEEeccCCCCCCCCeEEEEecCCCCcccceEEEecceeeeeeeCCceeEEEe
Q 000334 1179 ALVLTGHCSEKDHEPPQGLQLILGTKSTPHLVDTLVMANLGYWQMKVSPGVWYLQL 1234 (1646)
Q Consensus 1179 ~iliEGha~d~~~~pprGlqL~L~t~~~~~~~DTiVManlGYfQlka~PG~w~l~l 1234 (1646)
+.=|.|+..|.++.|..|..+++.... ...+++=..-|+|.+...||-|.|.+
T Consensus 294 ~~gI~G~V~D~~g~pi~~A~V~v~g~~---~~~~~~T~~~G~y~~~l~pG~Y~v~v 346 (376)
T cd03866 294 HLGVKGQVFDSNGNPIPNAIVEVKGRK---HICPYRTNVNGEYFLLLLPGKYMINV 346 (376)
T ss_pred cCceEEEEECCCCCccCCeEEEEEcCC---ceeEEEECCCceEEEecCCeeEEEEE
Confidence 455899999987799999999996432 11233344459999999999999886
No 78
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=20.99 E-value=1e+03 Score=31.10 Aligned_cols=117 Identities=16% Similarity=0.197 Sum_probs=72.1
Q ss_pred ceeEEEEeecCcchHHHHHHHHHHHHhcCC-CCeEEEEEECCCChhHHHHHHHHHhhcCcEEEEEEecCCcccccccccc
Q 000334 1337 KTINIFSIASGHLYERFLKIMILSVLKNTC-RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQ 1415 (1646)
Q Consensus 1337 ~~InIf~vas~~~ye~~l~v~I~SIl~nt~-~~v~F~il~~~lS~~~k~~L~~l~~~~~~~i~~v~~~wp~~L~~~~~~~ 1415 (1646)
..+-|+.- -++.+..+..|+.|++...+ .++.++++.++-+++..+.+..++.+|.. ++.+... . ...+.|.
T Consensus 66 p~vaIlIP--A~NE~~vI~~~l~s~L~~ldY~~~eIiVv~d~ndd~T~~~v~~l~~~~p~-v~~vv~~--~--~gp~~Ka 138 (504)
T PRK14716 66 KRIAIFVP--AWREADVIGRMLEHNLATLDYENYRIFVGTYPNDPATLREVDRLAARYPR-VHLVIVP--H--DGPTSKA 138 (504)
T ss_pred CceEEEEe--ccCchhHHHHHHHHHHHcCCCCCeEEEEEECCCChhHHHHHHHHHHHCCC-eEEEEeC--C--CCCCCHH
Confidence 34666543 45677889999999886654 57899999988888888888888877643 3333332 2 1112232
Q ss_pred cHH-HHHHHHhhccc-CCCCCCeEEEEeCceeeccCchHHHhcCCCC
Q 000334 1416 RII-WAYKILFLDVI-FPLSLEKVIFVDADQVVRADMGELYDMDIKG 1460 (1646)
Q Consensus 1416 r~~-~~y~RLfL~~L-fP~~vdkVIYLDaD~Iv~~Dl~eL~~lDl~g 1460 (1646)
.-. +++...+-..- =....|=|+.+|||.++.-|.-.+++-.+.+
T Consensus 139 ~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~~~~~~~ 185 (504)
T PRK14716 139 DCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLYNYLLPR 185 (504)
T ss_pred HHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHHHhhcCC
Confidence 222 34433322111 1113588999999999988877766544443
No 79
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=20.98 E-value=6.7e+02 Score=31.21 Aligned_cols=110 Identities=14% Similarity=0.175 Sum_probs=65.5
Q ss_pred eeEEEEeecCcchHHHHHHHHHHHHhcCCC-CeEEEEEECCCChhHHHHHHHHHhhcC--cEEEEEEec-CCcccccccc
Q 000334 1338 TINIFSIASGHLYERFLKIMILSVLKNTCR-PVKFWFIKNYLSPQFKDVIPHMAQEYG--FEYELITYK-WPTWLHKQKE 1413 (1646)
Q Consensus 1338 ~InIf~vas~~~ye~~l~v~I~SIl~nt~~-~v~F~il~~~lS~~~k~~L~~l~~~~~--~~i~~v~~~-wp~~L~~~~~ 1413 (1646)
.+-|+..+ .+-+..+..++.|++..+-. ++.++|++|+-++...+.++++.+++. ..++++... -|. ....
T Consensus 41 ~VSVIIpa--~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~---g~~G 115 (384)
T TIGR03469 41 AVVAVVPA--RNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPP---GWSG 115 (384)
T ss_pred CEEEEEec--CCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCC---CCcc
Confidence 46665544 45568888999999875432 578888998888888888888876553 245555432 011 0001
Q ss_pred ccc-HHHHHHHHhhcccCCCCCCeEEEEeCceeeccC-chHHHh
Q 000334 1414 KQR-IIWAYKILFLDVIFPLSLEKVIFVDADQVVRAD-MGELYD 1455 (1646)
Q Consensus 1414 ~~r-~~~~y~RLfL~~LfP~~vdkVIYLDaD~Iv~~D-l~eL~~ 1455 (1646)
+.+ ...++.. .....| +-|-++++|+|+++.-| +..+..
T Consensus 116 k~~A~n~g~~~--A~~~~~-~gd~llflDaD~~~~p~~l~~lv~ 156 (384)
T TIGR03469 116 KLWAVSQGIAA--ARTLAP-PADYLLLTDADIAHGPDNLARLVA 156 (384)
T ss_pred hHHHHHHHHHH--HhccCC-CCCEEEEECCCCCCChhHHHHHHH
Confidence 111 1112211 122233 37899999999987644 466653
No 80
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=20.67 E-value=5.8e+02 Score=29.07 Aligned_cols=94 Identities=12% Similarity=0.076 Sum_probs=53.2
Q ss_pred cchHHHHHHHHHHHHhcCC--CCeEEEEEECCCChhHHHHHHHHHhhcCcEEEEEEecCCccccccccccc-HHHHHHHH
Q 000334 1348 HLYERFLKIMILSVLKNTC--RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQR-IIWAYKIL 1424 (1646)
Q Consensus 1348 ~~ye~~l~v~I~SIl~nt~--~~v~F~il~~~lS~~~k~~L~~l~~~~~~~i~~v~~~wp~~L~~~~~~~r-~~~~y~RL 1424 (1646)
.+.+..+.-++.||+..+- ..+.+.|+.++-++...+.+..+.......+.. +. +. ....+.. ...++..
T Consensus 10 ~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~~~~~~i~~--~~-~~---~~~G~~~a~n~g~~~- 82 (241)
T cd06427 10 YKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRLPSIFRVVV--VP-PS---QPRTKPKACNYALAF- 82 (241)
T ss_pred CCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhccCCCeeEEE--ec-CC---CCCchHHHHHHHHHh-
Confidence 4557788999999987543 237788888887877777776654222223222 21 11 0000111 1122221
Q ss_pred hhcccCCCCCCeEEEEeCceeecc-CchHHHh
Q 000334 1425 FLDVIFPLSLEKVIFVDADQVVRA-DMGELYD 1455 (1646)
Q Consensus 1425 fL~~LfP~~vdkVIYLDaD~Iv~~-Dl~eL~~ 1455 (1646)
..-|=|+++|+|.++.- .+.++..
T Consensus 83 -------a~gd~i~~~DaD~~~~~~~l~~~~~ 107 (241)
T cd06427 83 -------ARGEYVVIYDAEDAPDPDQLKKAVA 107 (241)
T ss_pred -------cCCCEEEEEcCCCCCChHHHHHHHH
Confidence 24688999999987664 4445553
No 81
>PF04765 DUF616: Protein of unknown function (DUF616); InterPro: IPR006852 The entry represents a protein of unknown function. The function of is unknown although a number of the members are thought to be glycosyltransferases.
Probab=20.09 E-value=1.1e+02 Score=37.22 Aligned_cols=98 Identities=15% Similarity=0.127 Sum_probs=60.7
Q ss_pred CCCCeEEEEEECCCChhHHHHHHHHHhh--cCcEEEEEEecCCcccccccccccHHHHHHHHhhcccCCCCCCeEEEEeC
Q 000334 1365 TCRPVKFWFIKNYLSPQFKDVIPHMAQE--YGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDVIFPLSLEKVIFVDA 1442 (1646)
Q Consensus 1365 t~~~v~F~il~~~lS~~~k~~L~~l~~~--~~~~i~~v~~~wp~~L~~~~~~~r~~~~y~RLfL~~LfP~~vdkVIYLDa 1442 (1646)
+...++|+.+.+..+.+.++.=..+... .-...+++.++ ..-+.. .|...-+.+++.-.+|| +++--||+|+
T Consensus 88 s~~~vcf~mF~D~~t~~~l~~~~~~~~~~~~ig~WrIv~v~-~lp~~d----~rr~~r~~K~lpHrlfp-~y~ySIWID~ 161 (305)
T PF04765_consen 88 SKKNVCFFMFVDEETLKSLESEGHIPDENKKIGIWRIVVVK-NLPYDD----PRRNGRIPKLLPHRLFP-NYDYSIWIDG 161 (305)
T ss_pred HhcCccEEEEEehhhHHHHHhcCCccccccccCceEEEEec-CCCCcc----hhhcCcccceeccccCC-CCceEEEEee
Confidence 3357999999999887655331111110 11223344443 110111 12222355677778998 7999999999
Q ss_pred ceeeccCchHHHhcCC--CCCeeEEeee
Q 000334 1443 DQVVRADMGELYDMDI--KGRPLAYTPF 1468 (1646)
Q Consensus 1443 D~Iv~~Dl~eL~~lDl--~g~~~aav~d 1468 (1646)
-+.+.+|+..|.+--+ ++..+|+.++
T Consensus 162 ki~L~~Dp~~lie~~l~~~~~~~Ai~~H 189 (305)
T PF04765_consen 162 KIQLIVDPLLLIERFLWRKNADIAISKH 189 (305)
T ss_pred eEEEecCHHHHHHHHHhcCCCcEEEeCC
Confidence 9999999999886544 5677888654
No 82
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=20.05 E-value=1.8e+02 Score=28.47 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=31.8
Q ss_pred CCceEEEEeecCchhHHHHHHHHHHHHHc--CCeeEEEee
Q 000334 227 SSRTAILYGALGSDCFKEFHINLVQAAKE--GKVMYVVRP 264 (1646)
Q Consensus 227 ~~p~vILYg~i~s~~F~~fh~~L~~~A~~--Gki~YV~R~ 264 (1646)
+.|+++++.....+....++..+.+.|++ |++.|+|=-
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd 51 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVD 51 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEc
Confidence 57899988888887889999999998874 899999833
Done!