Query 000334
Match_columns 1646
No_of_seqs 280 out of 1212
Neff 6.5
Searched_HMMs 29240
Date Tue Mar 26 17:02:00 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000334.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_112-116//hhsearch_pdb/000334hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tzt_A Glycosyl transferase fa 1.0 1 1 341.1 16.1 255 1337-1606 4-274 (276)
2 1g9r_A Glycosyl transferase; a 1.0 1 1 308.6 10.9 231 1339-1587 1-255 (311)
3 1ll2_A Glycogenin-1; protein-s 1.0 1 1 197.8 13.7 229 1338-1611 4-265 (333)
4 3u2u_A Glycogenin-1, GN-1, GN1 1.0 1 1 184.7 11.6 204 1342-1588 8-225 (263)
5 1o7q_A N-acetyllactosaminide a 1.0 1 1 46.0 15.5 225 1335-1575 46-278 (289)
6 3ioh_A Histo-blood group ABO s 1.0 1 1 43.1 12.7 224 1335-1575 56-288 (298)
7 4ayl_A BOGT-metal-independent 1.0 1 1 33.5 13.0 216 1338-1573 2-227 (246)
8 3gmf_A Protein-disulfide isome 1.0 1 1 32.1 7.1 48 217-266 6-59 (205)
9 3gha_A Disulfide bond formatio 1.0 1 1 27.5 16.6 37 230-266 32-73 (202)
10 3bci_A Disulfide bond protein 1.0 1 1 27.2 16.2 35 674-709 127-161 (186)
No 1
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=1.00 E-value=1 Score=341.13 Aligned_cols=255 Identities=18% Similarity=0.213 Sum_probs=211.0
Q ss_pred CEEEEEEEECCCCHHHHHHHHHHHHHHCCC-CCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC
Q ss_conf 615799963185328999999999985199-9819999979999569878999876619699999904881001232101
Q 000334 1337 KTINIFSIASGHLYERFLKIMILSVLKNTC-RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQ 1415 (1646)
Q Consensus 1337 ~~InIf~vas~~~ye~~l~v~i~Sil~n~~-~~v~F~il~~~lS~~~~~~L~~l~~~~~~~i~fi~~~wp~~L~~~~~~~ 1415 (1646)
..|||+. ++|++|.+.+.++|.||++|++ .+++|||++++++++.++.|+.+.+.++++|+++.++ +.++.......
T Consensus 4 m~i~I~~-~~d~~Y~~~~~v~i~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~-~~~~~~~~~~~ 81 (276)
T 3tzt_A 4 MADALLL-TLDENYIPQMKVLMTSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRAT-DDLFSFAKVTD 81 (276)
T ss_dssp -CEEEEE-ECCGGGHHHHHHHHHHHHHHSTTCCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC------------
T ss_pred EEEEEEE-EECHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEC-HHHHHCCCCCC
T ss_conf 0678999-957868999999999999849987648999828999999999999998759989999828-89971486446
Q ss_pred CHH-HHHHHHHHCCCCCCCCCEEEEEECCEEECCCCHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCC-CC
Q ss_conf 089-9999996100278899849999376533269267881499997169962047877667842112210000169-99
Q 000334 1416 RII-WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLR-GR 1493 (1646)
Q Consensus 1416 r~~-~~y~rLfLd~llP~~vdKVIYLDaD~Iv~~Dl~eL~~~dl~g~~~aav~d~~~~~~~~g~~fw~~gyw~~~l~-~~ 1493 (1646)
|.. ++|.||++|.+||++++||||||+|++|++||.|||++|++|+++|||+||... .|..++++..++ ..
T Consensus 82 ~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d~~~~-------~~~~~~~~~~l~~~~ 154 (276)
T 3tzt_A 82 RYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASHTGKT-------DMANNVNRIRLGTDT 154 (276)
T ss_dssp --CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC--------------------------
T ss_pred CCCHHHHHHHHHHHHCCCCCCEEEEEECCEEECCCHHHHHHCCCCCCEEEEEEECCCC-------HHHHHHHHHCCCCCC
T ss_conf 5489999999999970011684999918856417989996258899869999823441-------177888874379888
Q ss_pred CEEECCEEEEEHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCC-CCCCCCCCCC---------
Q ss_conf 803133010417999965279999999998505999988899676757601375553698-4434677667---------
Q 000334 1494 PYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVPIFSLPQ-EWLWCESWCG--------- 1563 (1646)
Q Consensus 1494 ~YfNSGv~linL~~~R~~~~~dklr~~~~~ls~~~~sl~~~DQDllN~~~~~~~I~~Lp~-~wN~~~~~~~--------- 1563 (1646)
+|||||||||||++||+.+++++++.+++ .++.++.++|||+||.+|. +.|+.||+ +||++.....
T Consensus 155 ~yfNsGV~linl~~~R~~~~~~~~~~~~~---~~~~~~~~~DQd~LN~~f~-~~~~~Lp~~~wN~~~~~~~~~~~~~~~~ 230 (276)
T 3tzt_A 155 DYYNSGLLLINLKRAREEIDPDEIFSFVE---DNHMNLLLPDQDILNAMYG-DRIYPLDDLIYNYDARNYSSYLIRSKKQ 230 (276)
T ss_dssp -CEEEEEEEEEHHHHHHHCCHHHHHHHHH---HC--------CHHHHHHHG-GGEEEEEHHHHSEETTCHHHHHHHTTTC
T ss_pred CEEEEEEEEEEHHHHHHHHHHHHHHHHHH---HCCCCCCCCCHHHHHHHHH-CCEEECCCHHEEEECCCCHHHHCCCCCH
T ss_conf 74772079987999986429999999999---6636665788459999985-8989988532145323220331066312
Q ss_pred ---CCCCCCCEEEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf ---5446887188755899989725687620136773113889999
Q 000334 1564 ---NATKSKAKTIDLCNNPMTKEPKLQGARRIVSEWPDLDSEARQF 1606 (1646)
Q Consensus 1564 ---~~~~~~ak~I~~~~np~tk~~kl~~a~r~~~~w~~~d~~~~~~ 1606 (1646)
+...+.+++||||.. .|||......++...|+.|-.....+
T Consensus 231 ~~~~~~~~~~~iiHy~g~--~KPW~~~~~~~~~~~w~~Y~~~~~~~ 274 (276)
T 3tzt_A 231 ADLAWLMDHTVVLHFCGR--DKPWKKNHRNKFTSLYKHYMSLTKRY 274 (276)
T ss_dssp CSHHHHHHHCCEEECCSS--CCTTSTTCCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCEEEEECCC--CCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 215565149759998999--98968888981599999999999986
No 2
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=1.00 E-value=1 Score=308.57 Aligned_cols=231 Identities=18% Similarity=0.204 Sum_probs=188.4
Q ss_pred EEEEEEECCCCHHHHHHHHHHHH-HHCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCC-CCC
Q ss_conf 57999631853289999999999-8519998199999799995698789998766196999999048810012321-010
Q 000334 1339 INIFSIASGHLYERFLKIMILSV-LKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKE-KQR 1416 (1646)
Q Consensus 1339 InIf~vas~~~ye~~l~v~i~Si-l~n~~~~v~F~il~~~lS~~~~~~L~~l~~~~~~~i~fi~~~wp~~L~~~~~-~~r 1416 (1646)
|||+. ++|++|.+.+.+||.|| ++|++.+++|||+++++|++.++.|+.+...++.+++++.++ +.++..... ..+
T Consensus 1 m~I~~-~~d~~Y~~~~~vli~Sl~l~~~~~~~~f~il~~~ls~~~~~~L~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~ 78 (311)
T 1g9r_A 1 MDIVF-AADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVN-PEDFAGFPLNIRH 78 (311)
T ss_dssp CEEEE-EECGGGHHHHHHHHHHHHHTCTTSCCEEEEEESSCCHHHHHHHHHHSGGGTTTEEEEECC-GGGGTTSCCCCTT
T ss_pred CEEEE-ECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECC-HHHHHCCCCCCCC
T ss_conf 94999-877868999999999899976998835999989999999999999998759989999848-8997138654242
Q ss_pred H-HHHHHHHHHCCCCCCCCCEEEEEECCEEECCCCHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCC---C
Q ss_conf 8-99999996100278899849999376533269267881499997169962047877667842112210000169---9
Q 000334 1417 I-IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLR---G 1492 (1646)
Q Consensus 1417 ~-~~~y~rLfLd~llP~~vdKVIYLDaD~Iv~~Dl~eL~~~dl~g~~~aav~d~~~~~~~~g~~fw~~gyw~~~l~---~ 1492 (1646)
. .++|.|||++.+|| +++||||||+|+||++||.|||++|++|+++|||+||... ....|++.++ +
T Consensus 79 ~s~~~y~Rl~l~~ll~-~~~kvlyLD~D~iv~~di~eL~~~~l~~~~~aav~d~~~~---------~~~~~~~~~~~~~~ 148 (311)
T 1g9r_A 79 ISITTYARLKLGEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVE---------RQEGYKQKIGMADG 148 (311)
T ss_dssp CCGGGGGGGGHHHHCC-SCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHH---------TSTTHHHHTTCCTT
T ss_pred CCHHHHHHHHHHHHHH-HCCEEEEECCCEEECCCHHHHHCCCCCCCEEEEEECCCHH---------HHHHHHHHCCCCCC
T ss_conf 7899999999999854-1487999817867626779994528788679998454224---------41999985478889
Q ss_pred CCEEECCEEEEEHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCC-------C--
Q ss_conf 9803133010417999965279999999998505999988899676757601375553698443467766-------7--
Q 000334 1493 RPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVPIFSLPQEWLWCESWC-------G-- 1563 (1646)
Q Consensus 1493 ~~YfNSGv~linL~~~R~~~~~dklr~~~~~ls~~~~sl~~~DQDllN~~~~~~~I~~Lp~~wN~~~~~~-------~-- 1563 (1646)
..||||||||+|+++||+.+++++++.++++ .+.++.++|||+||.++. +.|..||.+||++...+ .
T Consensus 149 ~~yfNsGv~linl~~~r~~~~~~~~~~~~~~---~~~~~~~~DQd~lN~~f~-~~~~~Lp~~wN~~~~~~~~~~~~~~~~ 224 (311)
T 1g9r_A 149 EYYFNAGVLLINLKKWRRHDIFKMSSEWVEQ---YKDVMQYQDQDILNGLFK-GGVCYANSRFNFMPTNYAFMANWFASR 224 (311)
T ss_dssp SCCEEEEEEEECHHHHTTSCHHHHHHHHHHH---HTTTCSSHHHHHHHHHHT-TSEEEECGGGSBCHHHHHTCC----CS
T ss_pred CCEEEEEEEEEEHHHHHHCCHHHHHHHHHHH---CCCCCCCCCCCHHHHHHC-CCEEECCHHHCCCCCHHHHHHHHCCCC
T ss_conf 8468644434609999860269999999996---657675587279999980-977982800355741456776401466
Q ss_pred ---------CCCCCCCEEEECCCCCCCCCHHHH
Q ss_conf ---------544688718875589998972568
Q 000334 1564 ---------NATKSKAKTIDLCNNPMTKEPKLQ 1587 (1646)
Q Consensus 1564 ---------~~~~~~ak~I~~~~np~tk~~kl~ 1587 (1646)
.+....+++||||.. .|+|.-.
T Consensus 225 ~~~~~~~~~~~~~~~~~iiHy~g~--~KPW~~~ 255 (311)
T 1g9r_A 225 HTDPLYRDRTNTVMPVAVSHYCGP--AKPWHRD 255 (311)
T ss_dssp CCCHHHHHHHSCCSSCSEEECCSS--CCTTSSS
T ss_pred CCHHHHHHHHHCCCCCEEEEECCC--CCCCCCC
T ss_conf 513566677613699889975996--9899788
No 3
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=1.00 E-value=1 Score=197.83 Aligned_cols=229 Identities=14% Similarity=0.122 Sum_probs=158.6
Q ss_pred EEEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEE-EECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCC-CCC--C
Q ss_conf 157999631853289999999999851999819999-979999569878999876619699999904881001-232--1
Q 000334 1338 TINIFSIASGHLYERFLKIMILSVLKNTCRPVKFWF-IKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLH-KQK--E 1413 (1646)
Q Consensus 1338 ~InIf~vas~~~ye~~l~v~i~Sil~n~~~~v~F~i-l~~~lS~~~~~~L~~l~~~~~~~i~fi~~~wp~~L~-~~~--~ 1413 (1646)
.++|.. ++|.+|...+.+++.||.+|++ ...+++ +.++++++.++.|..+ +..+..+.+- +.... ... .
T Consensus 4 ~a~vt~-~~d~~Yl~~a~vl~~SL~~~~s-~~~l~vlv~~~is~~~~~~L~~~----~~~v~~v~~l-~~~~~~~~~~~~ 76 (333)
T 1ll2_A 4 QAFVTL-TTNDAYAKGALVLGSSLKQHRT-SRRLAVLTTPQVSDTMRKALEIV----FDEVITVDIL-DSGDSAHLTLMK 76 (333)
T ss_dssp EEEEEE-ESSHHHHHHHHHHHHHHHHTTC-CSEEEEEECTTSCHHHHHHHHHH----CSEEEECCTT-STTSTTHHHHHH
T ss_pred EEEEEE-EECHHHHHHHHHHHHHHHHHCC-CCCEEEEECCCCCHHHHHHHHHH----CCEEEEEEEC-CCCCHHHCCCCC
T ss_conf 499999-8488799999999999998589-99889998499999999899985----9989998636-873221102024
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCEEEEEECCEEECCCCHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01089999999610027889984999937653326926788149999716996204787766784211221000016999
Q 000334 1414 KQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLRGR 1493 (1646)
Q Consensus 1414 ~~r~~~~y~rLfLd~llP~~vdKVIYLDaD~Iv~~Dl~eL~~~dl~g~~~aav~d~~~~~~~~g~~fw~~gyw~~~l~~~ 1493 (1646)
..+...+|.||+++.+ + +++||||||+|++|.+||.+||+++ .+||++++ | | .
T Consensus 77 ~~~~~~t~~Kl~i~~l-~-~ydrvlYLDaD~lv~~di~eLf~~~----~~aAv~d~-------~--------~------~ 129 (333)
T 1ll2_A 77 RPELGVTLTKLHCWSL-T-QYSKCVFMDADTLVLANIDDLFERE----ELSAAPDP-------G--------W------P 129 (333)
T ss_dssp CGGGHHHHHHGGGGGC-T-TCSEEEEECTTEEECSCCGGGGGSC----SSEEEECS-------S--------S------T
T ss_pred CCCHHHHHHHHHHHHH-C-CCCEEEEEECCEEECCCHHHHHCCC----CEEEEECC-------C--------C------C
T ss_conf 6416888899998675-2-7774999838987654999984887----61587457-------8--------8------7
Q ss_pred CEEECCEEEEEHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCC-----CCCCCCCCCCCCC--CC---
Q ss_conf 8031330104179999652799999999985059999888996767576013755-----5369844346776--67---
Q 000334 1494 PYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVPI-----FSLPQEWLWCESW--CG--- 1563 (1646)
Q Consensus 1494 ~YfNSGv~linL~~~R~~~~~dklr~~~~~ls~~~~sl~~~DQDllN~~~~~~~I-----~~Lp~~wN~~~~~--~~--- 1563 (1646)
.||||||||+|+.. ...++++....+ ..++.++|||+||.++.+ .+ ..||.+||++... ..
T Consensus 130 ~~fNsGvmlin~~~----~~~~~l~~~~~~----~~~~~~~DQ~~LN~~f~~-~~~~~~~~~Lp~~yN~~~~~~~~~~p~ 200 (333)
T 1ll2_A 130 DCFNSGVFVYQPSV----ETYNQLLHVASE----QGSFDGGDQGLLNTFFNS-WATTDIRKHLPFIYNLSSISIYSYLPA 200 (333)
T ss_dssp TSEEEEEEEECCCH----HHHHHHHHHHHH----TCCTTSSHHHHHHHHTTT-TTTSCGGGBCCGGGSEETTHHHHTHHH
T ss_pred CCEEEEEEEEECCH----HHHHHHHHHHHH----CCCCCCCCHHHHHHHHHH-HCCCCCCCCCCCHHHCCCCCCHHCCHH
T ss_conf 65112599996887----899999999986----499778778999999975-023575615873775466521001477
Q ss_pred -CCCCCCCEEEECCCCCCCCCHHHHHH---H--------------HCCCCCC-HHHHHHHHHHHHHC
Q ss_conf -54468871887558999897256876---2--------------0136773-11388999999860
Q 000334 1564 -NATKSKAKTIDLCNNPMTKEPKLQGA---R--------------RIVSEWP-DLDSEARQFTAKIL 1611 (1646)
Q Consensus 1564 -~~~~~~ak~I~~~~np~tk~~kl~~a---~--------------r~~~~w~-~~d~~~~~~~~~~~ 1611 (1646)
......+++|||+.. .|+|+.... + .+...|| .|+..+..++.+..
T Consensus 201 ~~~~~~~~~IiHf~g~--~KPW~~~~~~~~~~~~~~~~~~~~~~~~~~~~WW~~~~~~~~~~~~~~~ 265 (333)
T 1ll2_A 201 FKAFGANAKVVHFLGQ--TKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFTTSVVPLLQQFG 265 (333)
T ss_dssp HHHHGGGCSEEECCSS--CCGGGSCEETTTTEEC--------CCHHHHHHHHHHHHHTHHHHHTC--
T ss_pred HHHHCCCCEEEEECCC--CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 7853389789998999--9988788788765424544454310789999999999762361100331
No 4
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=1.00 E-value=1 Score=184.70 Aligned_cols=204 Identities=16% Similarity=0.161 Sum_probs=147.0
Q ss_pred EEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEEE-CCCCHHHHHHHHHHHHHCCCEEEEEEE-CCCC--CCCCCCCCCCH
Q ss_conf 9963185328999999999985199981999997-999956987899987661969999990-4881--00123210108
Q 000334 1342 FSIASGHLYERFLKIMILSVLKNTCRPVKFWFIK-NYLSPQFKDVIPHMAQEYGFEYELITY-KWPT--WLHKQKEKQRI 1417 (1646)
Q Consensus 1342 f~vas~~~ye~~l~v~i~Sil~n~~~~v~F~il~-~~lS~~~~~~L~~l~~~~~~~i~fi~~-~wp~--~L~~~~~~~r~ 1417 (1646)
++.++|++|...+.+++.|+.+|++ ..++.++. ++++++.++.|+.+ +..+..+.+ ..+. .+.. ....+.
T Consensus 8 vTl~td~~Yl~ga~vL~~SL~~~~s-~~~lvvLvt~~vs~~~~~~L~~~----~~~vi~V~~l~~~~~~~~~~-~~rp~~ 81 (263)
T 3u2u_A 8 VTLTTNDAYAKGALVLGSSLKQHRT-TRRLVVLATPQVSDSMRKVLETV----FDEVIMVDVLDSGDSAHLTL-MKRPEL 81 (263)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTTC-CSEEEEEECTTSCHHHHHHHHHH----SSEEEECCCCCCCCHHHHHH-TTCTTG
T ss_pred EEEEECHHHHHHHHHHHHHHHHHCC-CCCEEEEECCCCCHHHHHHHHHC----CCEEEEEEECCCCCHHHHHH-HCCCCH
T ss_conf 9999788899999999999998699-98789996278999999999973----99589965358734555653-037516
Q ss_pred HHHHHHHHHCCCCCCCCCEEEEEECCEEECCCCHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 99999996100278899849999376533269267881499997169962047877667842112210000169998031
Q 000334 1418 IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLRGRPYHI 1497 (1646)
Q Consensus 1418 ~~~y~rLfLd~llP~~vdKVIYLDaD~Iv~~Dl~eL~~~dl~g~~~aav~d~~~~~~~~g~~fw~~gyw~~~l~~~~YfN 1497 (1646)
..+|.||++..+. +++||||||+|++|.+||.+||+++ .+||++|. | | ..|||
T Consensus 82 ~~~~~kl~~~~l~--~~~~vlylD~D~~v~~~~~~Lf~~~----~~aA~~d~-------~--------~------~~~fN 134 (263)
T 3u2u_A 82 GVTLTKLHCWSLT--QYSKCVFMDADTLVLANIDDLFDRE----ELSAAPDP-------G--------W------PDCFN 134 (263)
T ss_dssp GGGGGGGGGGGCT--TCSEEEEECTTEEECSCCGGGGGSC----SSEEEECT-------T--------S------TTSEE
T ss_pred HHHHHHHHHCCCC--CCCEEEEECCCEEECCCHHHHHCCC----CCEEECCC-------C--------C------CCCCC
T ss_conf 6775998864024--7652899808985135979885787----51470357-------8--------8------76556
Q ss_pred CCEEEEEHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCC----CCCCCCCCCCCCCCC--CC-CC---CCC
Q ss_conf 330104179999652799999999985059999888996767576013----755536984434677--66-75---446
Q 000334 1498 SALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHT----VPIFSLPQEWLWCES--WC-GN---ATK 1567 (1646)
Q Consensus 1498 SGv~linL~~~R~~~~~dklr~~~~~ls~~~~sl~~~DQDllN~~~~~----~~I~~Lp~~wN~~~~--~~-~~---~~~ 1567 (1646)
|||||+|++ ....+++.+...+ ..++.++|||+||.+|.+ ..++.||.+||++.. +. .. +..
T Consensus 135 sGv~li~p~----~~~~~~l~~~~~~----~~~~~~~DQd~LN~~f~~w~~~~~~~~Lp~~yN~~~~~~y~~~~~~~~~~ 206 (263)
T 3u2u_A 135 SGVFVYQPS----VETYNQLLHLASE----QGSFDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIYSYLPAFKVFG 206 (263)
T ss_dssp EEEEEECCC----HHHHHHHHHHHHH----HCCTTSSHHHHHHHHTTTTTTSCGGGBCCGGGSEEHHHHHSSHHHHHHHG
T ss_pred CEEEEECCC----HHHHHHHHHHHHH----CCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHCCCCHHHHHHC
T ss_conf 747997336----7899999999984----28988655789999860434467267689310551323104657778426
Q ss_pred CCCEEEECCCCCCCCCHHHHH
Q ss_conf 887188755899989725687
Q 000334 1568 SKAKTIDLCNNPMTKEPKLQG 1588 (1646)
Q Consensus 1568 ~~ak~I~~~~np~tk~~kl~~ 1588 (1646)
..+++||||.. .|+|+...
T Consensus 207 ~~~~IIHf~g~--~KPW~~~~ 225 (263)
T 3u2u_A 207 ASAKVVHFLGR--VKPWNYTY 225 (263)
T ss_dssp GGCSEEECCSS--SCGGGSEE
T ss_pred CCEEEEEECCC--CCCCCCCC
T ss_conf 98499988988--96988887
No 5
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=1.00 E-value=1 Score=45.99 Aligned_cols=225 Identities=16% Similarity=0.110 Sum_probs=130.0
Q ss_pred CCCEEEEEEEECCCCHH-HHHHHHHHHHHHC--CCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC
Q ss_conf 68615799963185328-9999999999851--99981999997999956987899987661969999990488100123
Q 000334 1335 HGKTINIFSIASGHLYE-RFLKIMILSVLKN--TCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQ 1411 (1646)
Q Consensus 1335 ~~~~InIf~vas~~~ye-~~l~v~i~Sil~n--~~~~v~F~il~~~lS~~~~~~L~~l~~~~~~~i~fi~~~wp~~L~~~ 1411 (1646)
.+-+|-|.++|.| .|. .++.--+.|.=+| ...++++||+++.-+ .++.+.-..+-++..+.+. ..-+-|
T Consensus 46 ~n~tIGl~vfa~G-kY~~~fl~~Fl~SAEk~Fm~g~~v~YYVFTD~~~-----~~p~v~l~~~r~~~V~~i~--~~~~W~ 117 (289)
T 1o7q_A 46 QKITVGLTVFAVG-RYIEHYLEEFLTSANKHFMVGHPVIFYIMVDDVS-----RMPLIELGPLRSFKVFKIK--PEKRWQ 117 (289)
T ss_dssp HTCCEEEEEEECT-THHHHHHHHHHHHHHHHBSTTSCEEEEEEESCGG-----GCCCCCCCTTEEEEEEECC--CCSSHH
T ss_pred HCCEEEEEEEEEC-CCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCHH-----HCCCCCCCCCCEEEEEEEC--CCCCCC
T ss_conf 0986999999963-0089999999999998635897579999857822-----1775446899757999960--004884
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCEEECCCCHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 2101089999999610027889984999937653326926788149999716996204787766784211221000016-
Q 000334 1412 KEKQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHL- 1490 (1646)
Q Consensus 1412 ~~~~r~~~~y~rLfLd~llP~~vdKVIYLDaD~Iv~~Dl~eL~~~dl~g~~~aav~d~~~~~~~~g~~fw~~gyw~~~l- 1490 (1646)
-..-+++.++.......++ .++|-+.++|+|+++.+++..= .| |..+|...-.-..+....+.|-+..--..+.
T Consensus 118 d~sm~Rm~~i~~~~~~~~~-~evDYLf~~dvd~~F~~~vG~E---~L-g~lv~~lHp~~y~~~~~~fpYERrp~S~AyIp 192 (289)
T 1o7q_A 118 DISMMRMKTIGEHIVAHIQ-HEVDFLFCMDVDQVFQDKFGVE---TL-GESVAQLQAWWYKADPNDFTYERRKESAAYIP 192 (289)
T ss_dssp HHHHHHHHHHHHHHHHTHH-HHCSEEEEECSSEEECSCBCGG---GC-SSEEEEECTTTTTSCGGGSCCCCCTTSTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHH-HCCCEEEEEECCCEEECCCCHH---HH-HHHHHCCCHHHHCCCCCCCCCCCCCCCEEEEC
T ss_conf 6588999999999998774-0288799962785752367887---88-77888038787678977798988967600115
Q ss_pred --CCCCEEECCEEEEEHHHHHHHCHHHHHHHHH-HHHCCCCCCCCCCCCCHHHHHH-CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf --9998031330104179999652799999999-9850599998889967675760-13755536984434677667544
Q 000334 1491 --RGRPYHISALYVVDLKRFRETAAGDNLRVFY-ETLSKDPNSLANLDQDLPNYAQ-HTVPIFSLPQEWLWCESWCGNAT 1566 (1646)
Q Consensus 1491 --~~~~YfNSGv~linL~~~R~~~~~dklr~~~-~~ls~~~~sl~~~DQDllN~~~-~~~~I~~Lp~~wN~~~~~~~~~~ 1566 (1646)
.|.+|+-+|++==-....-+. .+.|...+ +.+.++... .+.|.-.||-.+ ...|...|+++|+|.+.+-.+..
T Consensus 193 ~~eGdfYY~Ga~fGGt~~~vl~l--~~~c~~~i~~D~~n~I~A-~wHDESHLNKYf~~~KPtKvLSPEY~wd~~~~~p~~ 269 (289)
T 1o7q_A 193 FGEGDFYYHAAIFGGTPTQVLNI--TQECFKGILKDKKNDIEA-QWHDESHLNKYFLLNKPTKILSPEYCWDYHIGLPAD 269 (289)
T ss_dssp TTCCSCCEEEEEEEECHHHHHHH--HHHHHHHHHHHHHTTCCC-TTTHHHHHHHHHHHSCCSEEECGGGSBCGGGCCCTT
T ss_pred CCCCCEEEECEEECCCHHHHHHH--HHHHHHHHHHHHHCCEEE-EECCHHHHHHHHHHCCCCEEECHHHCCCCCCCCCCC
T ss_conf 89988788764608738999999--999999999998579078-842365666777646998787877778744589855
Q ss_pred CCCCEEEEC
Q ss_conf 688718875
Q 000334 1567 KSKAKTIDL 1575 (1646)
Q Consensus 1567 ~~~ak~I~~ 1575 (1646)
.+..++++.
T Consensus 270 ik~~r~~~~ 278 (289)
T 1o7q_A 270 IKLVKMSWQ 278 (289)
T ss_dssp CCSCSEEEC
T ss_pred CCEEEEEEE
T ss_conf 517899873
No 6
>3ioh_A Histo-blood group ABO system transferase; GTA, cisab mutant, AA(Gly)B, rossman fold, unliganded, conformation, blood group antigen, glycoprotein; HET: GOL; 1.25A {Homo sapiens} SCOP: c.68.1.9 PDB: 3ioi_A* 3ioj_A* 3u0y_A* 3u0x_A* 1zhj_A* 2o1h_A* 2o1g_A* 3sx5_A* 3sx3_A* 2o1f_A 2rj6_A* 2rj5_A* 2rj7_A* 1zi4_A* 2y7a_A* 3sxb_A* 3sxa_A* 2riz_A 2rj0_A* 2rj1_A* ...
Probab=1.00 E-value=1 Score=43.07 Aligned_cols=224 Identities=14% Similarity=0.161 Sum_probs=124.3
Q ss_pred CCCEEEEEEEECCCCHHHHHHHHHHHHHHC--CCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCC
Q ss_conf 686157999631853289999999999851--999819999979999569878999876619699999904881001232
Q 000334 1335 HGKTINIFSIASGHLYERFLKIMILSVLKN--TCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQK 1412 (1646)
Q Consensus 1335 ~~~~InIf~vas~~~ye~~l~v~i~Sil~n--~~~~v~F~il~~~lS~~~~~~L~~l~~~~~~~i~fi~~~wp~~L~~~~ 1412 (1646)
.+.+|-+.++|.| .|..++.--+.|.=+| ...++++||+++..+ .++.+.-..+-.+..+.+. ...+-|-
T Consensus 56 ~n~tIGl~vfA~G-kY~~fl~~Fl~SAek~Fm~g~~V~YYVFTD~~~-----~vP~v~l~~~r~~~V~~v~--~~~~Wqd 127 (298)
T 3ioh_A 56 QNTTIGLTVFAIK-KYVAFLKLFLETAEKHFMVGHRVHYYVFTDQPA-----AVPRVTLGTGRQLSVLEVR--AYKRWQD 127 (298)
T ss_dssp TTCEEEEEEEECG-GGGGGHHHHHHHHHHHBSTTSEEEEEEEESCGG-----GSCCCCCCTTEEEEEEECC--CCSSHHH
T ss_pred HCCCEEEEEEEEC-CHHHHHHHHHHHHHHHCCCCCEEEEEEEECCHH-----HCCCCCCCCCCEEEEEEEC--CCCCCCC
T ss_conf 1982999999957-289999999871997506796589999717844-----2776556999759999966--6567866
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCEEEEEECCEEECCCCHHHHHCCCCCCEEEEEEECC-CCCCCCCCCCCCCCCCCCCC-
Q ss_conf 1010899999996100278899849999376533269267881499997169962047-87766784211221000016-
Q 000334 1413 EKQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCD-NNKDMDGYRFWRQGFWKDHL- 1490 (1646)
Q Consensus 1413 ~~~r~~~~y~rLfLd~llP~~vdKVIYLDaD~Iv~~Dl~eL~~~dl~g~~~aav~d~~-~~~~~~g~~fw~~gyw~~~l- 1490 (1646)
..-+++.+...+....++ .++|-+.++|+|+++.+++-.=. | |..+|.. ... ..+....+.|-+..--..+.
T Consensus 128 ~sm~Rm~~i~~~~~~~~~-~EvDyLfc~dvd~~F~~~vG~E~---L-g~lva~l-Hp~~y~~~~~~FpYERrp~S~AyIp 201 (298)
T 3ioh_A 128 VSMRRMEMISDFCERRFL-SEVDYLVCVDVDMEFRDHVGVEI---L-TPLFGTL-HPGFYGSSREAFTYERRPQSQAYIP 201 (298)
T ss_dssp HHHHHHHHHHHHHHHTHH-HHCSEEEEEESSEEECSCBCGGG---C-SSEEEEB-CTTTTTSCGGGSCCCCCTTSTTCCC
T ss_pred CCHHHHHHHHHHHHHHHH-HCCCEEEEECCCCEECCCCCHHH---H-HHHHHHC-CHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 649999999999998876-00887999548975305764778---6-7567642-8134368811086557814541406
Q ss_pred --CCCCEEECCEEEEEHHHHHHHCHHHHHHHHH-HHHCCCCCCCCCCCCCHHHHHHC-CCCCCCCCCCCCCCCC-CCCCC
Q ss_conf --9998031330104179999652799999999-98505999988899676757601-3755536984434677-66754
Q 000334 1491 --RGRPYHISALYVVDLKRFRETAAGDNLRVFY-ETLSKDPNSLANLDQDLPNYAQH-TVPIFSLPQEWLWCES-WCGNA 1565 (1646)
Q Consensus 1491 --~~~~YfNSGv~linL~~~R~~~~~dklr~~~-~~ls~~~~sl~~~DQDllN~~~~-~~~I~~Lp~~wN~~~~-~~~~~ 1565 (1646)
.|.+|+-+|++==-.....+. .+.|...+ +.+.++... .+.|.-.||-.+. ..|...|+++|+|.+. .-...
T Consensus 202 ~~eGdfYY~ga~fGGt~~~vl~L--t~~C~~~i~~D~~n~IeA-~WhDESHLNKYfl~hKPtKvLSPEY~Wd~~~~~~~~ 278 (298)
T 3ioh_A 202 KDEGDFYYGGAFFGGSVQEVQRL--TRACHQAMMVDQANGIEA-VWHDESHLNKYLLRHKPTKVLSPEYLWDQQLLGWPA 278 (298)
T ss_dssp TTCCSCCBCTTEEEEEHHHHHHH--HHHHHHHHHHHHHTTCCC-TTTHHHHHHHHHHHSCCSEEECGGGSBCHHHHCCCT
T ss_pred CCCCCEEEEEEECCCCHHHHHHH--HHHHHHHHHHHHHCCCEE-ECCCHHHHHHHHHHCCCCCEECHHHCCCCCCCCCCC
T ss_conf 99998588644408759999999--999999999998679267-255553656666446898005987748932248976
Q ss_pred CCCCCEEEEC
Q ss_conf 4688718875
Q 000334 1566 TKSKAKTIDL 1575 (1646)
Q Consensus 1566 ~~~~ak~I~~ 1575 (1646)
..+..++++.
T Consensus 279 ~i~~~r~~~~ 288 (298)
T 3ioh_A 279 VLRKLRFTAV 288 (298)
T ss_dssp TCSCCCEEEC
T ss_pred CEEEEEEEEC
T ss_conf 0058887751
No 7
>4ayl_A BOGT-metal-independent glycosyltransferase; histo-blood group enzyme; HET: EPE; 1.92A {Bacteroides ovatus} PDB: 4ayj_A*
Probab=1.00 E-value=1 Score=33.54 Aligned_cols=216 Identities=15% Similarity=0.153 Sum_probs=115.0
Q ss_pred EEEEEEEECCCCHHHHHHHHHHHHHHC--CCCC--EEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCC
Q ss_conf 157999631853289999999999851--9998--199999799995698789998766196999999048810012321
Q 000334 1338 TINIFSIASGHLYERFLKIMILSVLKN--TCRP--VKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKE 1413 (1646)
Q Consensus 1338 ~InIf~vas~~~ye~~l~v~i~Sil~n--~~~~--v~F~il~~~lS~~~~~~L~~l~~~~~~~i~fi~~~wp~~L~~~~~ 1413 (1646)
+|-|.++|.| .|..++.--+.|.=+| ...+ +++||+++.-+. ++... .+ .+..+.-.-..|- -.
T Consensus 2 tIGl~vfA~G-kY~~fl~~Fl~SAek~Fm~g~~~~V~yYVFTD~~~~-----vp~~~--~~-~v~~~~~~~~~Wq---d~ 69 (246)
T 4ayl_A 2 RIGILYICTG-KYDIFWKDFYLSAERYFMQDQSFIIEYYVFTDSPKL-----YDEEN--NK-HIHRIKQKNLGWP---DN 69 (246)
T ss_dssp EEEEEEECCG-GGGGGHHHHHHHHHHHBSCSTTSEEEEEEEESCSCC-----TTTTT--CT-TEEEEECCCCCTT---HH
T ss_pred EEEEEEEEEC-CHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHH-----CCCCC--CC-EEEEEECCCCCCC---CC
T ss_conf 5999999947-489999999885997614797030699997078665-----87677--75-3899857767886---55
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCEEEEEECCEEECCCCHHHHHCCCC-CCEEEEEEECCCCCCCCCCCCCCCCCCCCCC--
Q ss_conf 0108999999961002788998499993765332692678814999-9716996204787766784211221000016--
Q 000334 1414 KQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIK-GRPLAYTPFCDNNKDMDGYRFWRQGFWKDHL-- 1490 (1646)
Q Consensus 1414 ~~r~~~~y~rLfLd~llP~~vdKVIYLDaD~Iv~~Dl~eL~~~dl~-g~~~aav~d~~~~~~~~g~~fw~~gyw~~~l-- 1490 (1646)
.-+++.+.... ...+. .++|-+.++|+|+++.+++-.=.=+..+ |..+|...-.-..+....+.|-+..--..+.
T Consensus 70 sm~Rm~~i~~~-~~~~~-~evDyLf~~dvd~~F~~~vG~E~L~p~~~~~lva~lHp~~y~~~~~~fpYERrp~S~AyIp~ 147 (246)
T 4ayl_A 70 TLKRFHIFLRI-KEQLE-RETDYLFFFNANLLFTSPIGKEILPPSDSNGLLGTMHPGFYNKPNSEFTYERRDASTAYIPE 147 (246)
T ss_dssp HHTHHHHHHTT-HHHHH-HHCSEEEEECTTEEECSCBCGGGSCCTTSCCEEEEBCGGGC---------------------
T ss_pred CHHHHHHHHHH-HHHHH-HHCCEEEEEECCCEEECCCCHHHCCCCCCCCEEEEECHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 05999999999-99987-64787999837842514677777265778887999361454788010866678255404069
Q ss_pred -CCCCEEECCEEEEEHHHHHHHCHHHHHHHHH-HHHCCCCCCCCCCCCCHHHHHHC-CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -9998031330104179999652799999999-98505999988899676757601-37555369844346776675446
Q 000334 1491 -RGRPYHISALYVVDLKRFRETAAGDNLRVFY-ETLSKDPNSLANLDQDLPNYAQH-TVPIFSLPQEWLWCESWCGNATK 1567 (1646)
Q Consensus 1491 -~~~~YfNSGv~linL~~~R~~~~~dklr~~~-~~ls~~~~sl~~~DQDllN~~~~-~~~I~~Lp~~wN~~~~~~~~~~~ 1567 (1646)
.|..|+-+|++==-.....+. .+.|...+ +.+.++... .+.|.-.||-.+. ..|-..|+++|+|.+.+.. .
T Consensus 148 ~eGdfYY~ga~fGG~~~~vl~L--t~~c~~~i~~D~~n~I~A-~whDESHLNKYfl~~KP~~vLSPEY~wd~~~~~---p 221 (246)
T 4ayl_A 148 GEGRYYYAGGLSGGCTKAYLKL--CTTICSWVDRDATNHIIP-IWHDESLINKYFLDNPPAITLSPAYLYPEGWLL---P 221 (246)
T ss_dssp ---CCCBCSSEEEEEHHHHHHH--HHHHHHHHHHHHTTCSSC-SCCHHHHHHHHHHHSCCSEEECGGGGEETTCCC---S
T ss_pred CCCCEEEEEEECCCCHHHHHHH--HHHHHHHHHHHHHCCCEE-ECCCHHHHHHHHHHCCCCEEECHHHCCCCCCCC---C
T ss_conf 9998688654529759999999--999999899998689257-355565767788767898103887727865689---8
Q ss_pred CCCEEE
Q ss_conf 887188
Q 000334 1568 SKAKTI 1573 (1646)
Q Consensus 1568 ~~ak~I 1573 (1646)
..+|+|
T Consensus 222 ~~~kii 227 (246)
T 4ayl_A 222 FEPIIL 227 (246)
T ss_dssp SCCSEE
T ss_pred CCCEEE
T ss_conf 764899
No 8
>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}
Probab=1.00 E-value=1 Score=32.08 Aligned_cols=48 Identities=15% Similarity=0.165 Sum_probs=25.3
Q ss_pred CCEECCCCCCCCC-EEEEEEECCCHHHHHHHHHHHHHH-----HCCCEEEEEEECC
Q ss_conf 6612157889984-599992059442899999999998-----8198269994217
Q 000334 217 FDHIHAESSISSR-TAILYGALGSDCFKEFHINLVQAA-----KEGKVMYVVRPVL 266 (1646)
Q Consensus 217 fDhv~~~~~~~~p-~vILYg~i~s~~F~~fh~~L~~~a-----~~gki~YV~R~~~ 266 (1646)
-++++| +.++| ++|.|.|...|-.+.||..+.+.- ..|+++|+||++|
T Consensus 6 ~~~~~G--~~~a~vtivef~D~~Cp~C~~~~~~~~~~l~~~~i~~g~v~~v~r~~p 59 (205)
T 3gmf_A 6 GHHLLG--NPAAKLRLVEFVSYTCPHCSHFEIESEGQLKIGMVQPGKGAIEVRNFV 59 (205)
T ss_dssp TEEEES--CTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSEEEEEEECC
T ss_pred CCCEEC--CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC
T ss_conf 884125--999996999988999978999999988999998453782899998488
No 9
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Probab=1.00 E-value=1 Score=27.52 Aligned_cols=37 Identities=19% Similarity=0.378 Sum_probs=15.3
Q ss_pred EEEEEEECCCHHHHHHHHHHHH-HH----HCCCEEEEEEECC
Q ss_conf 5999920594428999999999-98----8198269994217
Q 000334 230 TAILYGALGSDCFKEFHINLVQ-AA----KEGKVMYVVRPVL 266 (1646)
Q Consensus 230 ~vILYg~i~s~~F~~fh~~L~~-~a----~~gki~YV~R~~~ 266 (1646)
++|.|.|...|-...|+..+.+ .. ..|+++|++|++|
T Consensus 32 tvvef~D~~CP~C~~~~~~~~~~l~~~~~~~g~v~~~~~~~p 73 (202)
T 3gha_A 32 TVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVNVM 73 (202)
T ss_dssp EEEEEECTTCHHHHHHHHHTHHHHHHHTTTTTSEEEEEEECC
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC
T ss_conf 999987999860898998755999998243884999998467
No 10
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Probab=1.00 E-value=1 Score=27.19 Aligned_cols=35 Identities=11% Similarity=0.107 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCEECC
Q ss_conf 120025889999999999199988861788141305
Q 000334 674 KEKTFMDQSQESSMFVFKLGLTKLKCCLLMNGLVSE 709 (1646)
Q Consensus 674 ~~~~~d~~~~~~~~~~~rlgi~~~~p~vlvNG~i~~ 709 (1646)
.+..+...+....+..+++|+.+ .|.+++||..+.
T Consensus 127 ~~~~~~~~v~~~~~~a~~~gv~G-tPt~vvnG~~~~ 161 (186)
T 3bci_A 127 KDSKSWKAAEKDKKIAKDNHIKT-TPTAFINGEKVE 161 (186)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCS-SSEEEETTEECS
T ss_pred CCHHHHHHHHHHHHHHHHCCCCC-CCEEEECCEECC
T ss_conf 37889999999999999769988-996989999857
Done!