BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000335
(1646 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3UHR0|BAHC1_MOUSE BAH and coiled-coil domain-containing protein 1 OS=Mus musculus
GN=Bahcc1 PE=2 SV=2
Length = 2643
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 71 ISVGDCALF-KPPQDSPPFIGIIRSLTAGKENKLTLSVNWLYRPAEVKLGKGFLLEAAPN 129
+ +GDCA+F + + P+IG I SL + + + V W Y P E KLGK N
Sbjct: 2519 LRIGDCAVFLSAGRPNLPYIGRIESLWESWGSNMVVKVKWFYHPEETKLGK--RQSDGKN 2576
Query: 130 EIFYSFHKDEIPAASLLHPCKV 151
++ S H+DE ++ H C+V
Sbjct: 2577 ALYQSCHEDENDVQTISHKCQV 2598
>sp|Q9P281|BAHC1_HUMAN BAH and coiled-coil domain-containing protein 1 OS=Homo sapiens
GN=BAHCC1 PE=1 SV=3
Length = 2608
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 71 ISVGDCALF-KPPQDSPPFIGIIRSLTAGKENKLTLSVNWLYRPAEVKLGKGFLLEAAPN 129
+ VGDCA+F + + P+IG I S+ + + + V W Y P E KLGK N
Sbjct: 2484 LRVGDCAVFLSAGRPNLPYIGRIESMWESWGSNMVVKVKWFYHPEETKLGKRQC--DGKN 2541
Query: 130 EIFYSFHKDEIPAASLLHPCKV 151
++ S H+DE ++ H C+V
Sbjct: 2542 ALYQSCHEDENDVQTISHKCQV 2563
>sp|F4KFC7|MD26C_ARATH Probable mediator of RNA polymerase II transcription subunit 26c
OS=Arabidopsis thaliana GN=MED26C PE=2 SV=1
Length = 353
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 378 EEFLLILLRALDKLPVNLNALQMCNIGKSVNHLRTHKNVEIQKKARSLVDTWKKRVE 434
EE L+ LL+ L+ + + ALQ +IG+ VN +R H + +++ A+ LV WK+ V+
Sbjct: 141 EESLVELLQNLEDMDITFQALQETDIGRHVNRVRKHPSNNVRRLAKQLVKKWKETVD 197
>sp|F4J4Y5|MD26A_ARATH Probable mediator of RNA polymerase II transcription subunit 26a
OS=Arabidopsis thaliana GN=MED26A PE=2 SV=1
Length = 580
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 363 KIGDAGSPRDGDKSVEEFLLILLRALDKLPVNLNALQMCNIGKSVNHLRTHKNVEIQKKA 422
+I D S +D +K + LL LR L+ + ++++ L+ IGK+VN LR H + +I K A
Sbjct: 112 RIRDILSNKDDEK--DSVLLESLRKLESMSMSVDILKDTEIGKAVNGLRRHSSDKISKLA 169
Query: 423 RSLVDTWKKRVEAEMD 438
++L WK+ V+ M+
Sbjct: 170 KTLFAEWKRLVDQWMN 185
>sp|Q148K0|TCEA2_BOVIN Transcription elongation factor A protein 2 OS=Bos taurus GN=TCEA2
PE=2 SV=1
Length = 300
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 384 LLRALDKLPVNLNALQMCNIGKSVNHLRTH-KNVEIQKKARSLVDTWKKRVEAEMDARPR 442
LLR L +PV L+ LQ +G SVN LR + E+ A+SL+ +WKK ++A DA+ R
Sbjct: 30 LLRELKAMPVTLHLLQSTRVGMSVNALRKQSSDEEVVTLAKSLIKSWKKLLDAS-DAKAR 88
>sp|Q497V6|BAHD1_MOUSE Bromo adjacent homology domain-containing 1 protein OS=Mus musculus
GN=Bahd1 PE=2 SV=1
Length = 772
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 59 NSVTFFSQDGRKISVGDCALFK--PPQDSPPFIGIIRSLTAGKEN-KLTLSVNWLYRPAE 115
S + G I V D L K P + S P++ I +L E+ +L +S+ W YRP
Sbjct: 606 KSYQAVERHGETIRVRDTVLLKSGPRKTSTPYVAKISALWENPESGELMMSLLWYYRPEH 665
Query: 116 VKLGKG-FLLEAAPNEIFYSFHKDEIPAASLLHPCKV 151
++ G+ + E NE+F S H+D+ A + C V
Sbjct: 666 LQGGRSPSMHEPLQNEVFASRHQDQNSVACIEEKCYV 702
>sp|Q8TBE0|BAHD1_HUMAN Bromo adjacent homology domain-containing 1 protein OS=Homo sapiens
GN=BAHD1 PE=1 SV=2
Length = 780
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 59 NSVTFFSQDGRKISVGDCALFK--PPQDSPPFIGIIRSLTAGKEN-KLTLSVNWLYRPAE 115
S + G I V D L K P + S P++ I +L E+ +L +S+ W YRP
Sbjct: 614 KSYQAVERHGETIRVRDTVLLKSGPRKTSTPYVAKISALWENPESGELMMSLLWYYRPEH 673
Query: 116 VKLGKG-FLLEAAPNEIFYSFHKDEIPAASLLHPCKV 151
++ G+ + E NE+F S H+D+ A + C V
Sbjct: 674 LQGGRSPSMHEPLQNEVFASRHQDQNSVACIEEKCYV 710
>sp|Q15560|TCEA2_HUMAN Transcription elongation factor A protein 2 OS=Homo sapiens
GN=TCEA2 PE=1 SV=1
Length = 299
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 384 LLRALDKLPVNLNALQMCNIGKSVNHLRTH-KNVEIQKKARSLVDTWKKRVEAEMDARPR 442
LLR L +P+ L+ LQ +G SVN LR + E+ A+SL+ +WKK ++A DA+ R
Sbjct: 30 LLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLDAS-DAKAR 88
>sp|Q9FHK9|MD26B_ARATH Probable mediator of RNA polymerase II transcription subunit 26b
OS=Arabidopsis thaliana GN=MED26B PE=2 SV=1
Length = 436
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 36/54 (66%)
Query: 381 LLILLRALDKLPVNLNALQMCNIGKSVNHLRTHKNVEIQKKARSLVDTWKKRVE 434
LL LR L + +N++ L+ IGK+VN LR H + +I++ A++L+ WK+ V+
Sbjct: 159 LLDSLRHLKLMSLNVDILKSTEIGKAVNGLRKHSSDKIRQLAKTLIAEWKELVD 212
>sp|Q38796|LUMI_ARATH Homeobox protein LUMINIDEPENDENS OS=Arabidopsis thaliana GN=LD PE=1
SV=2
Length = 953
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 14/94 (14%)
Query: 339 CLNWFVQLRGLLVFDEWLQEVHKGKIGDAGSPRDGDKSVEEFLLILLRALDKLPVNLNAL 398
L WF+ G+L+ WL + + LL++L+ L LP++ +
Sbjct: 228 VLIWFLSKGGVLILTTWLSQA-------------ASEEQTSVLLLILKVLCHLPLHKASP 274
Query: 399 Q-MCNIGKSVNHLRTHKNVEIQKKARSLVDTWKK 431
+ M I +SVN LR ++ +I +A+ L+ W K
Sbjct: 275 ENMSAILQSVNGLRFYRISDISNRAKGLLSRWTK 308
>sp|Q54YG9|TCEA1_DICDI Transcription elongation factor A protein 1 OS=Dictyostelium
discoideum GN=tcea1 PE=3 SV=1
Length = 319
Score = 40.8 bits (94), Expect = 0.083, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 356 LQEVHKGKIGDAGSPRDG--DKSVEEFLLILLRALDKLPVNLNALQMCNIGKSVNHLRTH 413
+QE+ K + + +DG DK++E L+ + + L+ +IGKSV LR H
Sbjct: 1 MQEIIKCREQLEKAIKDGEFDKALE-----CLKNAKNFKITKDLLKSTDIGKSVGKLRAH 55
Query: 414 KNVEIQKKARSLVDTWKKRVEA 435
K++ I +++ L+D WK+ +E
Sbjct: 56 KDIGISSQSKELIDKWKQDIEG 77
>sp|Q63799|TCEA2_RAT Transcription elongation factor A protein 2 OS=Rattus norvegicus
GN=Tcea2 PE=2 SV=1
Length = 299
Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 384 LLRALDKLPVNLNALQMCNIGKSVNHLRTH-KNVEIQKKARSLVDTWKKRVEA 435
LLR L +P+ L+ LQ +G SVN LR + E+ A+SL+ +WKK ++
Sbjct: 29 LLRELKNMPITLHLLQSTRVGMSVNALRKQSSDEELIALAKSLIKSWKKLLDV 81
>sp|Q9QVN7|TCEA2_MOUSE Transcription elongation factor A protein 2 OS=Mus musculus
GN=Tcea2 PE=2 SV=2
Length = 299
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 384 LLRALDKLPVNLNALQMCNIGKSVNHLRTH-KNVEIQKKARSLVDTWKKRVEA 435
LLR L +P+ L+ LQ +G SVN LR + E+ A+SL+ +WKK ++
Sbjct: 29 LLRELKNMPITLHLLQSTRVGMSVNALRKQSSDEELIALAKSLIKSWKKLLDV 81
>sp|Q90YY5|MED26_XENLA Mediator of RNA polymerase II transcription subunit 26 OS=Xenopus
laevis GN=med26 PE=2 SV=1
Length = 597
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 23/127 (18%)
Query: 372 DGDKSVEEFLLIL--LRALDKLPVNLNALQMCNIGKSVNHLRTH-KNVEIQKKARSLVDT 428
D +++ + +L + +L+K P+ AL+ +GK +N +R N ++ K+A+ L+
Sbjct: 20 DKQSNIQNMVAVLEVISSLEKYPITKEALEETRLGKLINDVRKKTSNEDLAKRAKKLLRN 79
Query: 429 WKKRVEAEMDARPRLPEVPHSGNRQTGASTEVAIKSLVTQPASSKTGAVKLCQGD-APTK 487
W+K +E P + N Q ++ + P S+ G C+ D APT
Sbjct: 80 WQKLIE------------PVTQNEQ-------LVRGIPNLPGSANGGGSHNCKADPAPTN 120
Query: 488 SAFSSPV 494
P+
Sbjct: 121 LLAGKPI 127
>sp|Q14241|ELOA1_HUMAN Transcription elongation factor B polypeptide 3 OS=Homo sapiens
GN=TCEB3 PE=1 SV=2
Length = 798
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 392 PVNLNALQMCNIGKSVNHLRTHKNVEIQKKARSLVDTWKKRVEAEMDARP 441
P+ ++ L +GK+VN LR H++V AR LV WKK V E +A P
Sbjct: 63 PITVDILAETGVGKTVNSLRKHEHV--GSFARDLVAQWKKLVPVERNAEP 110
>sp|P20232|TFS2_DROME Transcription elongation factor S-II OS=Drosophila melanogaster
GN=TfIIS PE=2 SV=1
Length = 313
Score = 37.7 bits (86), Expect = 0.73, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 374 DKSVEEFLLILLRALDKLPVNLNALQMCNIGKSVNHLR-THKNVEIQKKARSLVDTWKKR 432
D + ++ L LL+AL L +NL+ L IG +VN LR + K+ E+ A++L+ WK+
Sbjct: 20 DGTGQDQALDLLKALQTLNINLDILTKTRIGMTVNELRKSSKDDEVIALAKTLIKNWKRF 79
Query: 433 VEAEMDARP 441
+ + P
Sbjct: 80 LASPAPTTP 88
>sp|Q90YL3|MED26_DANRE Mediator of RNA polymerase II transcription subunit 26 OS=Danio
rerio GN=med26 PE=2 SV=2
Length = 589
Score = 37.7 bits (86), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 381 LLILLRALDKLPVNLNALQMCNIGKSVNHLRTH-KNVEIQKKARSLVDTWKKRVEAEMDA 439
+L ++ L+K P+ AL+ +GK +N +R K+ ++ K+A+ L+ W+K +E
Sbjct: 31 VLDVITNLEKYPITKEALEETRLGKLINDVRKKTKDEDLAKRAKKLLRNWQKLIEPGQGD 90
Query: 440 RPRL--PEVPHSGN 451
P P VP S N
Sbjct: 91 TPVRGPPNVPGSAN 104
>sp|Q9VCP0|ELOA1_DROME Transcription elongation factor B polypeptide 3 OS=Drosophila
melanogaster GN=EloA PE=1 SV=1
Length = 643
Score = 37.4 bits (85), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 378 EEFLLILLRALDKLPVNLNALQMCNIGKSVNHLRTHKNVEIQKKARSLVDTWKKRVEAE 436
E+ LL + L LP+ LQ IGK+VN LR E+ A++LV WK V E
Sbjct: 25 EQRLLHCITKLFNLPIKFEHLQETGIGKTVNALRKISG-EVGVAAKTLVTKWKAMVAKE 82
>sp|P07273|TFS2_YEAST Transcription elongation factor S-II OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DST1 PE=1 SV=4
Length = 309
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 372 DGDKSVEEFLLILLRALDKLPV-NLNALQMCNIGKSVNHLRTHKNVEIQKKARSLVDTWK 430
+ +KS + +L +L LDK V L+ +G VN + NVEI K + ++ +WK
Sbjct: 14 EKNKSNDAAVLEILHVLDKEFVPTEKLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWK 73
Query: 431 KRVEAEMDARPRLPEVPHS----GNRQTGASTEVAIKSLVTQPASSKTGAVK 478
+ + R R + H GN + + ++ V QPASS++ A+K
Sbjct: 74 DAINK--NKRSRQAQQHHQDHAPGNAEDKTTVGESVNG-VQQPASSQSDAMK 122
>sp|Q8IID4|DYHC2_PLAF7 Dynein heavy chain-like protein PF11_0240 OS=Plasmodium falciparum
(isolate 3D7) GN=PF11_0240 PE=3 SV=1
Length = 5251
Score = 34.7 bits (78), Expect = 6.3, Method: Composition-based stats.
Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 10/155 (6%)
Query: 902 NTENSKEIIVAEETPDGAGRNPEEDKAGFRVDADGAPDGKQRISGPLSTEDKVSESTRGV 961
NTE+ K I + E +N E++KA + D K +TED+ +
Sbjct: 4104 NTEDEKAIEINTEDEKAVEKNTEDEKAVEKNTEDEKAIEK-------NTEDEKAVEKNTE 4156
Query: 962 ETEAVEGSASNQ-SLEFDGENKKGVSEGLNSGVKREQKPSPITTHSESVKGKDGELLHTS 1020
+ +AVE + ++ ++E + E++K V + EQ E+ +D + + +
Sbjct: 4157 DEKAVEKNTEDEKAIEKNTEDEKAVEKNTEDEKAVEQNTEDEKVVEENT--EDEKAVEKN 4214
Query: 1021 GSGEDMPLKNVDEVKVEKADEVDSKSHVNQTEEQN 1055
E KN ++ KV + D K + EE+N
Sbjct: 4215 TEDEKAVEKNTEDEKVVEEKIEDEKGEEQKAEEEN 4249
>sp|P24709|INVO_CEBAL Involucrin OS=Cebus albifrons GN=IVL PE=2 SV=1
Length = 428
Score = 34.3 bits (77), Expect = 8.0, Method: Composition-based stats.
Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 15/200 (7%)
Query: 920 GRNPEEDKAGF---RVDADGAPDGKQRISGPLSTEDKVSESTRGVETEAVE---GSASNQ 973
G+N E KAG ++ + A KQ++ G L E K+ + E + G+ Q
Sbjct: 92 GQNKEHQKAGNPEQQLKQEEAQREKQQLQGQLEEEKKLLDQQLDQELAKRDDQLGTKKKQ 151
Query: 974 SLEFDGENKKGVSEGLNSGVKREQKPSPITTHSESVKGKDGELLHTSGSGEDMPLKNVDE 1033
LEF E ++G + L K + P + + ++ ++G+L H + E
Sbjct: 152 LLEFP-EQQEGQLKHLEQQEKPLELPEQQSGQPKYLEQQEGQLKHLEEQKGQLKHLEQQE 210
Query: 1034 VKVEKADEVDSKSHVNQTEEQ--NSEWKSNAPMIREDRVVPHLGSAENE------EKGNG 1085
++E ++VD H+ Q E+Q + E + E+ + E E+ G
Sbjct: 211 GQLELPEQVDQPKHLEQLEKQLEHPEQQEGKLKKLEEEEEQLKHLEQQEEQLKHLEQQEG 270
Query: 1086 KVDHRENLEGKEVKEELCAG 1105
+++H E EG+ E C G
Sbjct: 271 QLEHLEQQEGELKHLEQCEG 290
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.128 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 659,678,880
Number of Sequences: 539616
Number of extensions: 31086707
Number of successful extensions: 84627
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 740
Number of HSP's that attempted gapping in prelim test: 78456
Number of HSP's gapped (non-prelim): 5132
length of query: 1646
length of database: 191,569,459
effective HSP length: 131
effective length of query: 1515
effective length of database: 120,879,763
effective search space: 183132840945
effective search space used: 183132840945
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 68 (30.8 bits)