Query 000335
Match_columns 1646
No_of_seqs 324 out of 880
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 04:49:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000335.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000335hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1886 BAH domain proteins [T 100.0 2.7E-39 5.9E-44 376.0 13.0 443 20-479 7-462 (464)
2 cd04713 BAH_plant_3 BAH, or Br 100.0 5.3E-31 1.1E-35 271.6 15.6 135 59-193 9-146 (146)
3 cd04716 BAH_plantDCM_I BAH, or 99.9 2E-24 4.4E-29 217.7 12.9 115 68-184 1-121 (122)
4 cd04717 BAH_polybromo BAH, or 99.9 4.6E-24 1E-28 212.8 11.9 114 68-183 1-119 (121)
5 cd04370 BAH BAH, or Bromo Adja 99.9 1.4E-23 3E-28 203.6 12.6 114 68-183 1-122 (123)
6 cd04714 BAH_BAHCC1 BAH, or Bro 99.9 7.9E-24 1.7E-28 212.3 10.5 109 68-178 1-117 (121)
7 smart00439 BAH Bromo adjacent 99.9 7.5E-23 1.6E-27 199.2 11.6 112 70-183 1-119 (120)
8 PF01426 BAH: BAH domain; Int 99.9 4.7E-23 1E-27 200.8 9.8 111 69-183 1-118 (119)
9 cd04715 BAH_Orc1p_like BAH, or 99.9 1.6E-22 3.4E-27 212.0 13.3 120 59-179 18-150 (159)
10 cd04721 BAH_plant_1 BAH, or Br 99.9 2E-22 4.4E-27 205.0 10.4 113 64-178 1-119 (130)
11 cd04709 BAH_MTA BAH, or Bromo 99.9 2.1E-22 4.6E-27 211.9 10.4 114 69-182 2-138 (164)
12 cd04710 BAH_fungalPHD BAH, or 99.9 9.7E-22 2.1E-26 201.3 11.0 115 63-181 4-134 (135)
13 cd04760 BAH_Dnmt1_I BAH, or Br 99.9 1.7E-21 3.7E-26 196.9 10.7 109 68-180 1-123 (124)
14 cd04712 BAH_DCM_I BAH, or Brom 99.8 1.2E-20 2.7E-25 192.0 13.3 113 67-184 2-129 (130)
15 cd04720 BAH_Orc1p_Yeast BAH, o 99.8 6.7E-21 1.4E-25 203.0 11.1 121 63-183 44-177 (179)
16 cd04708 BAH_plantDCM_II BAH, o 99.8 1.1E-20 2.3E-25 204.1 11.5 121 64-186 1-148 (202)
17 cd04718 BAH_plant_2 BAH, or Br 99.8 2.1E-19 4.5E-24 185.9 2.1 96 85-183 51-147 (148)
18 cd04719 BAH_Orc1p_animal BAH, 99.7 6.5E-18 1.4E-22 172.1 9.2 111 69-179 2-124 (128)
19 cd04711 BAH_Dnmt1_II BAH, or B 99.6 2E-16 4.3E-21 161.8 6.7 100 84-183 24-135 (137)
20 smart00509 TFS2N Domain in the 99.4 4.3E-13 9.3E-18 125.7 4.4 58 377-434 17-74 (75)
21 KOG1827 Chromatin remodeling c 99.3 1.1E-12 2.4E-17 159.7 6.2 122 60-184 179-307 (629)
22 cd00183 TFIIS_I N-terminal dom 99.3 2E-12 4.3E-17 121.2 5.6 58 377-434 19-76 (76)
23 TIGR01385 TFSII transcription 99.2 8.6E-11 1.9E-15 134.7 10.7 63 378-440 20-82 (299)
24 PF08711 Med26: TFIIS helical 99.1 2.3E-11 5E-16 106.5 2.5 52 383-434 1-53 (53)
25 KOG3554 Histone deacetylase co 98.8 5.6E-10 1.2E-14 130.4 -1.4 131 70-202 5-183 (693)
26 KOG1105 Transcription elongati 98.7 1.6E-08 3.4E-13 115.7 6.9 60 377-436 21-81 (296)
27 PLN02976 amine oxidase 97.2 0.0019 4.1E-08 86.9 12.4 106 321-439 1256-1362(1713)
28 KOG1793 Uncharacterized conser 96.1 0.012 2.6E-07 70.4 7.3 122 301-433 159-290 (417)
29 KOG2821 RNA polymerase II tran 94.0 0.017 3.7E-07 70.1 0.3 57 378-436 24-80 (433)
30 PF11467 LEDGF: Lens epitheliu 91.2 0.18 3.8E-06 51.6 3.2 59 376-434 20-80 (106)
31 COG5139 Uncharacterized conser 83.9 2.2 4.9E-05 50.2 6.5 79 344-433 206-286 (397)
32 COG5076 Transcription factor i 75.5 0.41 8.8E-06 57.5 -2.9 94 62-158 268-363 (371)
33 PTZ00112 origin recognition co 74.7 3.1 6.8E-05 55.5 4.4 127 57-183 439-610 (1164)
34 KOG1984 Vesicle coat complex C 54.1 4.2E+02 0.009 36.5 17.1 26 1370-1395 21-46 (1007)
35 cd05834 HDGF_related The PWWP 43.9 28 0.0006 34.4 3.8 44 70-114 2-45 (83)
36 PF09926 DUF2158: Uncharacteri 41.4 31 0.00067 31.9 3.5 41 71-114 1-41 (53)
37 KOG2133 Transcriptional corepr 38.8 19 0.00042 48.2 2.4 116 65-180 140-280 (1229)
38 KOG0260 RNA polymerase II, lar 34.3 3.7E+02 0.0079 38.1 12.5 13 1111-1123 1175-1187(1605)
39 cd06080 MUM1_like Mutated mela 33.0 55 0.0012 32.5 3.9 39 71-113 1-39 (80)
40 PF10383 Clr2: Transcription-s 31.0 1.7E+02 0.0036 31.6 7.4 40 59-98 1-51 (139)
41 cd05835 Dnmt3b_related The PWW 30.1 54 0.0012 32.5 3.4 41 71-112 1-44 (87)
42 PF09871 DUF2098: Uncharacteri 29.6 78 0.0017 32.3 4.4 42 70-117 2-47 (91)
43 COG4014 Uncharacterized protei 29.1 99 0.0021 31.7 4.9 40 72-116 10-53 (97)
44 cd05162 PWWP The PWWP domain, 25.2 81 0.0017 30.7 3.6 40 71-111 1-46 (87)
45 PHA02763 hypothetical protein; 24.9 60 0.0013 32.9 2.7 44 319-362 36-80 (102)
46 PF11717 Tudor-knot: RNA bindi 20.3 1.6E+02 0.0036 26.8 4.3 37 71-109 1-37 (55)
47 cd05840 SPBC215_ISWI_like The 20.1 89 0.0019 31.6 2.8 40 71-111 1-49 (93)
No 1
>KOG1886 consensus BAH domain proteins [Transcription]
Probab=100.00 E-value=2.7e-39 Score=375.96 Aligned_cols=443 Identities=22% Similarity=0.212 Sum_probs=378.1
Q ss_pred cCcccccccCCCcccccccccccCCCC-CCCCCCCCCCCCCceEEEEECCEEEee-CCEEEEcCCC-CCCCeEEEEEEEe
Q 000335 20 EGRRRHMWTVPPRDSAILASVADGGSA-SPSSSSSLSSSPNSVTFFSQDGRKISV-GDCALFKPPQ-DSPPFIGIIRSLT 96 (1646)
Q Consensus 20 ~~k~k~~W~~~~~~~~Ig~s~~~~gk~-~~~~~~~~~~s~k~YeSf~vDGeeYrV-GDcVLVkped-d~pPyIArI~sIw 96 (1646)
.++-+..|++.+.+.++|++.+..|+. ..++ +|.+|.+.|..|.. +|.|++.+++ ..+||||||++||
T Consensus 7 ~~~~~~~~~~~~~a~~~g~a~~~qGv~~~k~~---------h~~t~~~~~g~~~~~~d~vllvped~~~pPyvaii~~i~ 77 (464)
T KOG1886|consen 7 EPKLKSELRPRDEASSMGDANKEQGVGGVKSL---------HFETFIYRGGRYINYGDSVLLVPEDPGKPPYVAIIEDIY 77 (464)
T ss_pred cccccccCCccchhhhhhhhhhhccccccccc---------cccceeeccCcccccCcceeecCCCCCCCCeeEEEeeee
Confidence 456788999999999999999999999 4555 57777788777777 9999999886 6899999999999
Q ss_pred ecCC-CcEEEEEEEEeccccccCCc-ccccCCCCCeeEecCCcCcCCccccccccEEEecCCCccCCC--CCCeEEEEEE
Q 000335 97 AGKE-NKLTLSVNWLYRPAEVKLGK-GFLLEAAPNEIFYSFHKDEIPAASLLHPCKVAFLPKGIELPS--GIGSFVCRKV 172 (1646)
Q Consensus 97 Ed~d-Ge~~VrVqWFYRPeET~lgk-g~~~~aDpNELFLSdh~DdnpLeSIlGKC~Vlsl~ey~dlP~--g~dvFfCRr~ 172 (1646)
.+.. +.++++|+|||||+|+..+. ..|-..+++|||+++|+|++++++|.++|.|+++..|.++++ +...|+||+.
T Consensus 78 a~~~g~~~k~ev~W~YrPee~~~~~~~~~~a~~~relF~SfH~De~~A~ti~~rC~V~fvp~~kqlp~~~~~~~f~~r~v 157 (464)
T KOG1886|consen 78 AQERGGNVKVEVQWFYRPEESEGGGSGKWGAKQPRELFLSFHEDEAFAETILHRCKVHFVPAYKQLPNRVGHESFICRRV 157 (464)
T ss_pred ccccCCCcceecccccCCCccCCCCCCCcccCCCccccccccccchhhhhhcccceeeeccccccccccCCCCCcccccc
Confidence 8766 58999999999999998754 434456788999999999999999999999999999999995 4799999999
Q ss_pred EeCCCCEEEecCcchhhhhhhhhhHHHHhhcccccccccCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcccccccc
Q 000335 173 YDITNKCLWWLTDQDYINERQEEVDQLLYKTHIEMHATVPSGGRSPKPMNGPTSTSQLKPGSDGAQNSASFPSQVKGKKR 252 (1646)
Q Consensus 173 YD~~tKrF~~LtdedY~~e~qeEVD~LLdktk~emkAt~q~ggrsPkpv~~pss~~~~k~gsd~~qn~~sf~s~~kgkkr 252 (1646)
||..++.||++++.+|....+.++|.++.++..++.-..++...-...++-+-..|| +..++ +-+++.+..++
T Consensus 158 Yd~~~~~~~~~~~~~~~~~~k~e~d~~~~kt~~~~~~~~~p~~~~t~~~~~~~~~~~-~s~~~------~~~r~ss~~~~ 230 (464)
T KOG1886|consen 158 YDAVTSKLRKLRDGDFGDGQKLEIDMLVPKTGPRRGTLPDPKKVQTLNAAASKRSQQ-KSEIS------SLSRASSSVDG 230 (464)
T ss_pred cccccccccCccccchhcccccCCccchhhhcccCCCCCCccccccccccccceecc-ccccc------ccccccccccc
Confidence 999999999999999999889999999999999999888877776666554444444 44443 33566788999
Q ss_pred ccCcCCCCccccccCccccCCCCCCCccchhhHHHHhhhhccCCccchhhHHHHHHhhcccccccccccccchhhhHHHH
Q 000335 253 ERGDQSSEPVKRERSSKMEDGNSGHSRTETNLKTEIAKITEKGGLVDYDGVEKLVQLMVPERNDKKIDLVCRSLLAGVVA 332 (1646)
Q Consensus 253 er~~q~~~~~kr~~~~k~~d~~~~~~~~~~~lk~ei~~l~~~GGl~~~e~V~klV~LM~~~~~~kk~~L~~R~~l~~Vi~ 332 (1646)
++.+.....+.|.+..|+.+.-...+.-..-.-+++..-+++|++..-+.|..++.||+++....+.||.++..++.++.
T Consensus 231 ~~~e~~~~~t~~~~~~k~~g~~~~~v~~~~~~~s~~~~~~~~~~~~p~~~v~~~~~le~~s~~s~a~d~~~~~~~~~~l~ 310 (464)
T KOG1886|consen 231 EILESFDLLTGRSDRDKVLGKLLEVVWQNSCSTSEAKPAGDQGSLWPNPSVSPCGALEQPSHASLAKDLESYLGLRETLV 310 (464)
T ss_pred ccccCCCCCCCcccccccccccchhhccccccccccCCCcccccCCCCcccchhhhhhhhhhhhHhhhhhhhhhhhhHHH
Confidence 99999999999999999998777766555557778888899999999999999999999999998999999988888877
Q ss_pred hccchhhHHHHHHHhchhhHHHHHHHHhhcccCCCCCCCCCCCChHHHHHHHHHHhcCCCCcHhhhhhcCCCcccccccC
Q 000335 333 ATDKFDCLNWFVQLRGLLVFDEWLQEVHKGKIGDAGSPRDGDKSVEEFLLILLRALDKLPVNLNALQMCNIGKSVNHLRT 412 (1646)
Q Consensus 333 ~T~~qd~L~~Fvq~~Gl~vL~eWLqE~~K~k~gd~~sp~~~dks~ee~lLeLLr~Lk~lPiTlelLk~T~IGktVnkLRK 412 (1646)
.+=.-.||-+|.+++|..+..+|.++++..+..++.++.+.++-+.+..+.++..|..++..++++...++++-+++|+-
T Consensus 311 ~~~k~~~~l~~~~ln~~~~~~e~~~~l~~p~~p~~~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 390 (464)
T KOG1886|consen 311 LLLKGQALLKPEPLNPGETKPEPKQELHPPSFPDGQSSPSSMKLNDDDYDGLCVGLELTAGSLYLYCGQEGLICAGHLPC 390 (464)
T ss_pred hhhcchhhhccccCCCcccCchhhhhccCCCCCCCccCccccccCchhHHHHHHhhhhhccchhhhcccccceeccccCC
Confidence 77778999999999999999999999999999999998888888899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhcCCC------CCcccCCCCCCCCCCcccccccccccCCCCCCCcccc
Q 000335 413 HKNVEIQKKARSLVDTWKKRVEAEMDARPR------LPEVPHSGNRQTGASTEVAIKSLVTQPASSKTGAVKL 479 (1646)
Q Consensus 413 H~n~eI~kLAk~LVkkWKk~Vd~e~~~kp~------~~e~~~~g~~~~~~~~~~~~k~~~s~~s~sks~s~k~ 479 (1646)
|.+++|..-+..+|..|+.++...+..++. .+|---.+.|+++.+.+ +.+.......+.+..++|.
T Consensus 391 ~~~~~v~~~~~a~~~~~~~~~~~~~~~~~~~~q~~~~~~k~~~~~ret~~~~e-a~~~~~~~~~a~~~~~~k~ 462 (464)
T KOG1886|consen 391 PMLPEVKLSPVAAVHREGLLLAPSSVPKGTPFQHPPWPEKRLCSPRETGVNGE-AICGVLPLLVAHAGTTCKG 462 (464)
T ss_pred CCCCCcCcccccccchhhhcccceeccCCCCccCCCChhhcccCccccCCchh-cccCCchhhhhcccccccC
Confidence 999999999999999999999988865543 44544455577777665 4444444555555555553
No 2
>cd04713 BAH_plant_3 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.97 E-value=5.3e-31 Score=271.64 Aligned_cols=135 Identities=51% Similarity=0.941 Sum_probs=121.7
Q ss_pred CceEEEEECCEEEeeCCEEEEcCCCCCCCeEEEEEEEeecCCCcEEEEEEEEeccccccCCc-ccccCCCCCeeEecCCc
Q 000335 59 NSVTFFSQDGRKISVGDCALFKPPQDSPPFIGIIRSLTAGKENKLTLSVNWLYRPAEVKLGK-GFLLEAAPNEIFYSFHK 137 (1646)
Q Consensus 59 k~YeSf~vDGeeYrVGDcVLVkpedd~pPyIArI~sIwEd~dGe~~VrVqWFYRPeET~lgk-g~~~~aDpNELFLSdh~ 137 (1646)
.+|++|+++|++|+|||||||++++..+||||+|++||++.++.++|+|+|||||+||.... +.+...++||||+|+|.
T Consensus 9 ~~y~s~~~dg~~y~vgD~Vlv~~~~~~~pyI~~I~~i~~~~~~~~~v~V~WFyRpeEi~~~~~~~~~~~~~~ElF~S~~~ 88 (146)
T cd04713 9 CHYTSFEKDGNKYRLEDCVLLVPEDDQKPYIAIIKDIYKQEEGSLKLEVQWLYRPEEIEKKKGGNWKAEDPRELFYSFHR 88 (146)
T ss_pred eeeeeEEECCEEEECCCEEEEeCCCCCCCEEEEEEEEEEcCCCCEEEEEEeeECHHHhccccccccccCCCCeEEEeCCC
Confidence 48999999999999999999999877899999999999988889999999999999997532 33444578999999999
Q ss_pred CcCCccccccccEEEecCCCccCCC--CCCeEEEEEEEeCCCCEEEecCcchhhhhhh
Q 000335 138 DEIPAASLLHPCKVAFLPKGIELPS--GIGSFVCRKVYDITNKCLWWLTDQDYINERQ 193 (1646)
Q Consensus 138 DdnpLeSIlGKC~Vlsl~ey~dlP~--g~dvFfCRr~YD~~tKrF~~LtdedY~~e~q 193 (1646)
|++++++|+|||+|++.+++.+++. ..++||||+.||..+++|||||+++|++++|
T Consensus 89 d~~~~~~I~gkc~V~~~~~~~~~~~~~~~~~F~cr~~yD~~~~~~~~~~~~~~~~~~~ 146 (146)
T cd04713 89 DEVPAESVLHPCKVAFVPKGKQIPLRKGHSGFIVRRVYDNVNKKLWKLTDQDYEDERQ 146 (146)
T ss_pred CcCCHHHCcceeEEEECCccccCCccCCCCeEEEEEEEcCCCCcEeeccccccccccC
Confidence 9999999999999999999987773 4689999999999999999999999998643
No 3
>cd04716 BAH_plantDCM_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.91 E-value=2e-24 Score=217.66 Aligned_cols=115 Identities=21% Similarity=0.365 Sum_probs=103.3
Q ss_pred CEEEeeCCEEEEcCCCCCCCeEEEEEEEeecCCCcEEEEEEEEeccccccCCc-ccccCCCCCeeEecCCcCcCCccccc
Q 000335 68 GRKISVGDCALFKPPQDSPPFIGIIRSLTAGKENKLTLSVNWLYRPAEVKLGK-GFLLEAAPNEIFYSFHKDEIPAASLL 146 (1646)
Q Consensus 68 GeeYrVGDcVLVkpedd~pPyIArI~sIwEd~dGe~~VrVqWFYRPeET~lgk-g~~~~aDpNELFLSdh~DdnpLeSIl 146 (1646)
|+.|++||+|||.+++..++|||+|++||++.+|..+|+|+|||||+||..++ +.+ .+++|||+|+|+|++|+++|+
T Consensus 1 g~~~~lgD~V~v~~~~~~~~yi~rI~~i~e~~~g~~~~~v~WyyRpeet~~~r~~~~--~~~rEvFlS~~~D~~pl~~I~ 78 (122)
T cd04716 1 GITYNLGDDAYVQGGEGEEPFICKITEFFEGTDGKTYFTAQWFYRAEDTVIERQATN--HDKKRVFYSEIKNDNPLDCLI 78 (122)
T ss_pred CcEEEcCCEEEEECCCCCCCEEEEEEEEEEcCCCceEEEEEEEEcHHHhcccccccc--CCCceEEEecccCccchhhee
Confidence 67899999999999877899999999999998999999999999999998865 333 357999999999999999999
Q ss_pred cccEEEecCCCccCC-----CCCCeEEEEEEEeCCCCEEEecC
Q 000335 147 HPCKVAFLPKGIELP-----SGIGSFVCRKVYDITNKCLWWLT 184 (1646)
Q Consensus 147 GKC~Vlsl~ey~dlP-----~g~dvFfCRr~YD~~tKrF~~Lt 184 (1646)
+||+|+++..+..++ .+.++|||++.|+....+|..|+
T Consensus 79 ~Kc~V~~~~~~~~~~~~~~~~~~~df~c~~~Y~~~~~tF~~~~ 121 (122)
T cd04716 79 SKVKILQVPPNVGTKRKKPNSEKCDYYYDMEYCVPYSTFQTLR 121 (122)
T ss_pred eeeEEEEeCCCCCcccccccCCCceEEEeeEeccchhheEeCC
Confidence 999999999888773 34799999999999999998874
No 4
>cd04717 BAH_polybromo BAH, or Bromo Adjacent Homology domain, as present in polybromo and yeast RSC1/2. The human polybromo protein (BAF180) is a component of the SWI/SNF chromatin-remodeling complex PBAF. It is thought that polybromo participates in transcriptional regulation. Saccharomyces cerevisiae RSC1 and RSC2 are part of the 15-subunit nucleosome remodeling RSC complex. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.91 E-value=4.6e-24 Score=212.76 Aligned_cols=114 Identities=25% Similarity=0.382 Sum_probs=100.5
Q ss_pred CEEEeeCCEEEEcCCCC-CCCeEEEEEEEeecCCCcEEEEEEEEeccccccCCcccccCCCCCeeEecCCcCcCCccccc
Q 000335 68 GRKISVGDCALFKPPQD-SPPFIGIIRSLTAGKENKLTLSVNWLYRPAEVKLGKGFLLEAAPNEIFYSFHKDEIPAASLL 146 (1646)
Q Consensus 68 GeeYrVGDcVLVkpedd-~pPyIArI~sIwEd~dGe~~VrVqWFYRPeET~lgkg~~~~aDpNELFLSdh~DdnpLeSIl 146 (1646)
|..|++||||||.+++. .++|||+|.+||++.+|.++|+|+|||||+||....... ..+||||+|.+.|++|+++|+
T Consensus 1 g~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~g~~~~~~~Wf~rP~et~~~~~~~--~~~~Evfls~~~d~~~~~~I~ 78 (121)
T cd04717 1 GLQYRVGDCVYVANPEDPSKPIIFRIERLWKDEDGEKFFFGCWFYRPEETFHEPTRK--FYKNEVFKSPLYETVPVEEIV 78 (121)
T ss_pred CCEEECCCEEEEeCCCCCCCCEEEEEeEEEECCCCCEEEEEEEEeChHHccCCCccc--cccCceEEcCccccccHHHhc
Confidence 57899999999998765 889999999999998899999999999999997644322 246999999999999999999
Q ss_pred cccEEEecCCCccCC-C---CCCeEEEEEEEeCCCCEEEec
Q 000335 147 HPCKVAFLPKGIELP-S---GIGSFVCRKVYDITNKCLWWL 183 (1646)
Q Consensus 147 GKC~Vlsl~ey~dlP-~---g~dvFfCRr~YD~~tKrF~~L 183 (1646)
|||.|++..+|.+.. . ..++||||+.||...+.|++|
T Consensus 79 ~kc~Vl~~~~y~~~~p~~~~~~dvy~ce~~y~~~~~~~~~~ 119 (121)
T cd04717 79 GKCAVMDVKDYIKGRPTEISEEDVYVCESRYNESAKSFKKI 119 (121)
T ss_pred CeeEEEehHHHhcCCCCCCCCCCEEEEeEEECcccccEecc
Confidence 999999999998654 2 358999999999999999876
No 5
>cd04370 BAH BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p), where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p), confirming the initial hypothesis that BAH plays a role in protein-protein interactions.
Probab=99.90 E-value=1.4e-23 Score=203.62 Aligned_cols=114 Identities=35% Similarity=0.559 Sum_probs=101.6
Q ss_pred CEEEeeCCEEEEcCCCC---CCCeEEEEEEEeecCCCcEEEEEEEEeccccccCCcccccCCCCCeeEecCCcCcCCccc
Q 000335 68 GRKISVGDCALFKPPQD---SPPFIGIIRSLTAGKENKLTLSVNWLYRPAEVKLGKGFLLEAAPNEIFYSFHKDEIPAAS 144 (1646)
Q Consensus 68 GeeYrVGDcVLVkpedd---~pPyIArI~sIwEd~dGe~~VrVqWFYRPeET~lgkg~~~~aDpNELFLSdh~DdnpLeS 144 (1646)
|.+|++||||||.+++. .++|||+|.+||++.++.++++|+|||||+||...... ...+||||+|+++|++++++
T Consensus 1 g~~y~vgd~V~v~~~~~~~~~~~~i~~I~~i~~~~~~~~~~~v~wf~rp~e~~~~~~~--~~~~~Elf~s~~~~~i~v~~ 78 (123)
T cd04370 1 GITYEVGDSVYVEPDDSIKSDPPYIARIEELWEDTNGSKQVKVRWFYRPEETPKGLSP--FALRRELFLSDHLDEIPVES 78 (123)
T ss_pred CCEEecCCEEEEecCCcCCCCCCEEEEEeeeeECCCCCEEEEEEEEEchhHhcccccc--ccccceeEEecCccccCHHH
Confidence 67899999999999875 78999999999999889999999999999999875432 34679999999999999999
Q ss_pred cccccEEEecCCCccCC-----CCCCeEEEEEEEeCCCCEEEec
Q 000335 145 LLHPCKVAFLPKGIELP-----SGIGSFVCRKVYDITNKCLWWL 183 (1646)
Q Consensus 145 IlGKC~Vlsl~ey~dlP-----~g~dvFfCRr~YD~~tKrF~~L 183 (1646)
|+|||.|++..+|.+.. ...++||||+.||..+++|++|
T Consensus 79 I~gkc~V~~~~~~~~~~~~~~~~~~~~f~~r~~yd~~~~~fk~~ 122 (123)
T cd04370 79 IIGKCKVLFVSEFEGLKQRPNKIDTDDFFCRLAYDPTTKEFKAL 122 (123)
T ss_pred hccccEEEechHhhccccccccCCCCeEEEEEEECcCcceEEeC
Confidence 99999999999887652 2468999999999999999876
No 6
>cd04714 BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.90 E-value=7.9e-24 Score=212.29 Aligned_cols=109 Identities=33% Similarity=0.576 Sum_probs=97.0
Q ss_pred CEEEeeCCEEEEcCCCC-CCCeEEEEEEEeecCCCcEEEEEEEEeccccccCCcccccCCCCCeeEecCCcCcCCccccc
Q 000335 68 GRKISVGDCALFKPPQD-SPPFIGIIRSLTAGKENKLTLSVNWLYRPAEVKLGKGFLLEAAPNEIFYSFHKDEIPAASLL 146 (1646)
Q Consensus 68 GeeYrVGDcVLVkpedd-~pPyIArI~sIwEd~dGe~~VrVqWFYRPeET~lgkg~~~~aDpNELFLSdh~DdnpLeSIl 146 (1646)
|+.|+|||||||+++++ .+||||+|.+||++.+|.++|+|+|||||+||..++... .+++|||+|+|.|++++++|+
T Consensus 1 ~~~~~vGD~V~v~~~~~~~~pyIgrI~~i~e~~~g~~~~~v~WfyrPeEt~~~~~~~--~~~~EvF~S~~~d~~~~~~I~ 78 (121)
T cd04714 1 KEIIRVGDCVLFKSPGRPSLPYVARIESLWEDPEGNMVVRVKWYYRPEETKGGRKPN--HGEKELFASDHQDENSVQTIE 78 (121)
T ss_pred CCEEEcCCEEEEeCCCCCCCCEEEEEEEEEEcCCCCEEEEEEEEEcHHHccCccccc--CCCCceEecCCcccccHHHhC
Confidence 57899999999998764 789999999999998899999999999999998765432 357999999999999999999
Q ss_pred cccEEEecCCCccCC-------CCCCeEEEEEEEeCCCC
Q 000335 147 HPCKVAFLPKGIELP-------SGIGSFVCRKVYDITNK 178 (1646)
Q Consensus 147 GKC~Vlsl~ey~dlP-------~g~dvFfCRr~YD~~tK 178 (1646)
|||.|++..+|.++. .+.++|+|++.||+...
T Consensus 79 gkc~V~~~~ey~~~~~~~~~~~~~~d~~~Ce~~yn~~~~ 117 (121)
T cd04714 79 HKCYVLTFAEYERLARVKKKPQDGVDFYYCAGTYNPDTG 117 (121)
T ss_pred cccEEEehhHheecccccCCCCcCCCEEEEeccCCCCcC
Confidence 999999999988654 34799999999999864
No 7
>smart00439 BAH Bromo adjacent homology domain.
Probab=99.88 E-value=7.5e-23 Score=199.24 Aligned_cols=112 Identities=31% Similarity=0.508 Sum_probs=98.8
Q ss_pred EEeeCCEEEEcCCC-CCCCeEEEEEEEeecCCCc-EEEEEEEEeccccccCCcccccCCCCCeeEecCCcCcCCcccccc
Q 000335 70 KISVGDCALFKPPQ-DSPPFIGIIRSLTAGKENK-LTLSVNWLYRPAEVKLGKGFLLEAAPNEIFYSFHKDEIPAASLLH 147 (1646)
Q Consensus 70 eYrVGDcVLVkped-d~pPyIArI~sIwEd~dGe-~~VrVqWFYRPeET~lgkg~~~~aDpNELFLSdh~DdnpLeSIlG 147 (1646)
.|++||||||.+++ ..++|||+|.+||++.++. ++++|+|||||+||...... ..++||||+|++++++++++|+|
T Consensus 1 ~~~vgd~V~v~~~~~~~~~~i~~I~~i~~~~~~~~~~~~v~Wf~rp~e~~~~~~~--~~~~~Elf~s~~~~~i~~~~I~~ 78 (120)
T smart00439 1 TIRVGDFVLVEPDDADEPYYIGRIEEIFETKKNSEKMVRVRWFYRPEETVLEKAA--LFDKNEVFLSDEYDTVPLSDIIG 78 (120)
T ss_pred CcccCCEEEEeCCCCCCCCEEEEEEEEEECCCCCEEEEEEEEEEChhhccccccc--cCCCcceEEEccCccCChHHeee
Confidence 37999999999886 5689999999999998888 89999999999999875533 23579999999999999999999
Q ss_pred ccEEEecCCCccCCC-----CCCeEEEEEEEeCCCCEEEec
Q 000335 148 PCKVAFLPKGIELPS-----GIGSFVCRKVYDITNKCLWWL 183 (1646)
Q Consensus 148 KC~Vlsl~ey~dlP~-----g~dvFfCRr~YD~~tKrF~~L 183 (1646)
||+|++..+|.+.+. ..++||||+.||..+++|++|
T Consensus 79 kc~V~~~~~~~~~~~~~~~~~~~~f~cr~~yd~~~~~f~~~ 119 (120)
T smart00439 79 KCNVLSKSDYPGLRPEGKIGEPDVFFCESLYDPEKGAFKKL 119 (120)
T ss_pred EEEEEEcchhcccccccCCCCCCeEEEEEEEccccCcccCC
Confidence 999999999886552 368999999999999999775
No 8
>PF01426 BAH: BAH domain; InterPro: IPR001025 The BAH (bromo-adjacent homology) family contains proteins such as eukaryotic DNA (cytosine-5) methyltransferases IPR001525 from INTERPRO, the origin recognition complex 1 (Orc1) proteins, as well as several proteins involved in transcriptional regulation. The BAH domain appears to act as a protein-protein interaction module specialised in gene silencing, as suggested for example by its interaction within yeast Orc1p with the silent information regulator Sir1p. The BAH module might therefore play an important role by linking DNA methylation, replication and transcriptional regulation [].; GO: 0003677 DNA binding; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 3SWR_A 3PTA_A 1M4Z_A 1ZBX_A ....
Probab=99.88 E-value=4.7e-23 Score=200.78 Aligned_cols=111 Identities=32% Similarity=0.581 Sum_probs=96.3
Q ss_pred EEEeeCCEEEEcCCC-CCCCeEEEEEEEeecCCCc--EEEEEEEEeccccccCCcccccCCCCCeeEecCCcCcCCcccc
Q 000335 69 RKISVGDCALFKPPQ-DSPPFIGIIRSLTAGKENK--LTLSVNWLYRPAEVKLGKGFLLEAAPNEIFYSFHKDEIPAASL 145 (1646)
Q Consensus 69 eeYrVGDcVLVkped-d~pPyIArI~sIwEd~dGe--~~VrVqWFYRPeET~lgkg~~~~aDpNELFLSdh~DdnpLeSI 145 (1646)
++|++||||||.+++ ..++|||+|.+||++.++. ++++|+|||||+||...+ ...+||||+|++++++++++|
T Consensus 1 ~~~~vGD~V~v~~~~~~~~~~v~~I~~i~~~~~~~~~~~~~v~Wf~rp~d~~~~~----~~~~~Elf~s~~~~~~~~~~I 76 (119)
T PF01426_consen 1 VTYKVGDFVYVKPDDPPEPPYVARIEEIWEDKDGNKEKMVKVRWFYRPEDTSLGK----TFSPRELFLSDHCDDIPVESI 76 (119)
T ss_dssp EEEETTSEEEEECTSTTSEEEEEEEEEEEEETTTSEEEEEEEEEEEEGGGSTTGG----HSCTTEEEEEEEEEEEEGGGE
T ss_pred CEEeCCCEEEEeCCCCCCCCEEEEEEEEEcCCCCCEEEEEEEEEeECcccccccc----cCCCCEEEEECcEeEEehhhE
Confidence 479999999999986 5788999999999988777 999999999999993222 234599999999999999999
Q ss_pred ccccEEEecCCCccCC--C--CCCeEEEEEEEeCCCCEEEec
Q 000335 146 LHPCKVAFLPKGIELP--S--GIGSFVCRKVYDITNKCLWWL 183 (1646)
Q Consensus 146 lGKC~Vlsl~ey~dlP--~--g~dvFfCRr~YD~~tKrF~~L 183 (1646)
+|||.|++...|.+.. . ..++||||+.||...++|..|
T Consensus 77 ~gkc~V~~~~~~~~~~~~~~~~~~~F~cr~~yd~~~~~f~~~ 118 (119)
T PF01426_consen 77 RGKCNVLHLEDYEQARPYGKEEPDTFFCRYAYDPQKKRFKKL 118 (119)
T ss_dssp EEEEEEEEHHHHTTGCCHCHHTTTEEEEEEEEETTTTEEEE-
T ss_pred EeeeEEEECCccccccccccCCCCEEEEEEEEeCCcCEEeCC
Confidence 9999999998877644 2 579999999999999999876
No 9
>cd04715 BAH_Orc1p_like BAH, or Bromo Adjacent Homology domain, as present in the Schizosaccharomyces pombe homolog of Saccharomyces cerevisiae Orc1p and similar proteins. Orc1 is part of the Yeast Sir1-origin recognition complex, the Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.88 E-value=1.6e-22 Score=212.00 Aligned_cols=120 Identities=21% Similarity=0.349 Sum_probs=94.5
Q ss_pred CceEEEEECCEEEeeCCEEEEcCCCCCCCeEEEEEEEeecCC--CcEEEEEEEEeccccccCCcccccCCCCCeeEecCC
Q 000335 59 NSVTFFSQDGRKISVGDCALFKPPQDSPPFIGIIRSLTAGKE--NKLTLSVNWLYRPAEVKLGKGFLLEAAPNEIFYSFH 136 (1646)
Q Consensus 59 k~YeSf~vDGeeYrVGDcVLVkpedd~pPyIArI~sIwEd~d--Ge~~VrVqWFYRPeET~lgkg~~~~aDpNELFLSdh 136 (1646)
+||++|+++|++|+|||||||++++ .+||||+|++||+..+ +.++++|+|||||+||....+......+||||+|+|
T Consensus 18 ~~Y~s~~~~g~~y~lGD~Vlv~s~~-~~~yIgkI~~iwe~~~~~g~~~~~v~WfyRp~E~~~~~~~~~~~~~nEvFlS~~ 96 (159)
T cd04715 18 QFYRSFTYDGVEYRLYDDVYVHNGD-SEPYIGKIIKIYETAIDSGKKKVKVIWFFRPSEIRMELKGEPKRHINEVFLACG 96 (159)
T ss_pred eEEEEEEECCEEEeCCCEEEEeCCC-CCCEEEEEEEEEEcCCcCCceEEEEEeeeCHHHhccccccCcccCCCcEEEecC
Confidence 3999999999999999999999854 8999999999999765 889999999999999975322112345799999998
Q ss_pred c-----CcCCccccccccEEEecCCCccCC-C--C---CCeEEEEEEEeCCCCE
Q 000335 137 K-----DEIPAASLLHPCKVAFLPKGIELP-S--G---IGSFVCRKVYDITNKC 179 (1646)
Q Consensus 137 ~-----DdnpLeSIlGKC~Vlsl~ey~dlP-~--g---~dvFfCRr~YD~~tKr 179 (1646)
+ ++||+++|+|||.|+++++|..-+ . + ...|++-+.||...++
T Consensus 97 ~d~~~~~~n~l~sI~gKC~Vl~~~ey~~~~~~s~~~~~~~~~~f~~~f~~~~~~ 150 (159)
T cd04715 97 RGEGLANINLLESIIGKCNVVCISEDFRNPQPSDGIPTSADFLFPCNFDVGRCV 150 (159)
T ss_pred cCccccccCcHHHccceeEEEEehHhhhCCCCcCCccccCcceeeeEEEecCce
Confidence 6 568999999999999999987433 2 2 2334444445554443
No 10
>cd04721 BAH_plant_1 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.87 E-value=2e-22 Score=205.01 Aligned_cols=113 Identities=20% Similarity=0.273 Sum_probs=98.0
Q ss_pred EEECCEEEeeCCEEEEcCCCCCCCeEEEEEEEeecCCCcEEEEEEEEeccccccCCcccccCCCCCeeEecCCcCcCCcc
Q 000335 64 FSQDGRKISVGDCALFKPPQDSPPFIGIIRSLTAGKENKLTLSVNWLYRPAEVKLGKGFLLEAAPNEIFYSFHKDEIPAA 143 (1646)
Q Consensus 64 f~vDGeeYrVGDcVLVkpedd~pPyIArI~sIwEd~dGe~~VrVqWFYRPeET~lgkg~~~~aDpNELFLSdh~DdnpLe 143 (1646)
|+.||.+|+|||||||++++ ..+|||+|++||++.+|.++++|+|||||+||....+.. ...+||||+|++.|+|+++
T Consensus 1 ~~r~~~~i~vGD~V~v~~~~-~~~~va~Ie~i~ed~~g~~~v~v~WF~~p~E~~~~~~~~-~~~~~EvFlS~~~d~i~~~ 78 (130)
T cd04721 1 FCRNGVTISVHDFVYVLSEE-EDRYVAYIEDLYEDKKGSKMVKVRWFHTTDEVGAALSPD-SVNPREIFLSPNLQVISVE 78 (130)
T ss_pred CccCCEEEECCCEEEEeCCC-CCcEEEEEEEEEEcCCCCEEEEEEEecCHHHhccccCCC-CCCCCeEEEcCCccccchH
Confidence 46789999999999999876 778999999999998899999999999999997743322 1357999999999999999
Q ss_pred ccccccEEEecCCCccCCC-C-----CCeEEEEEEEeCCCC
Q 000335 144 SLLHPCKVAFLPKGIELPS-G-----IGSFVCRKVYDITNK 178 (1646)
Q Consensus 144 SIlGKC~Vlsl~ey~dlP~-g-----~dvFfCRr~YD~~tK 178 (1646)
+|+|||+||+.++|.++.. . .++|+||+.||....
T Consensus 79 ~I~gk~~Vls~~~y~k~~~~~~~~~~~~~f~C~~~~d~~~~ 119 (130)
T cd04721 79 CIDGLATVLTREHYEKFQSVPKNSSELQAYFCYRQIDNNKV 119 (130)
T ss_pred HeeeeeEECCHHHHhhhhccccCccccccEEEEEEecCCCC
Confidence 9999999999999987642 1 469999999998754
No 11
>cd04709 BAH_MTA BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.87 E-value=2.1e-22 Score=211.90 Aligned_cols=114 Identities=22% Similarity=0.316 Sum_probs=97.9
Q ss_pred EEEeeCCEEEEcCCCCCCCeEEEEEEEeecCCCcEEEEEEEEeccccccCC------c--c------------cccCCCC
Q 000335 69 RKISVGDCALFKPPQDSPPFIGIIRSLTAGKENKLTLSVNWLYRPAEVKLG------K--G------------FLLEAAP 128 (1646)
Q Consensus 69 eeYrVGDcVLVkpedd~pPyIArI~sIwEd~dGe~~VrVqWFYRPeET~lg------k--g------------~~~~aDp 128 (1646)
..|+|||||||.++...++|||+|++||+..++.++|+|+|||||+||... + + ..+..+.
T Consensus 2 ~~yrvGD~Vy~~~~~~~Py~I~rI~e~~~~~~~~~~vkV~wfYRp~DI~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~~ 81 (164)
T cd04709 2 NMYRVGDYVYFESSPNNPYLIRRIEELNKTARGHVEAKVVCYYRRRDIPDSLYQLADQHRRELEEKSDDLTPKQRHQLRH 81 (164)
T ss_pred cEEecCCEEEEECCCCCCCEEEEEEEEEeCCCCCEEEEEEEEEChhHccchhhhhcccccccccccccccchhhhhccCc
Confidence 579999999999875556679999999999999999999999999998431 1 1 1233578
Q ss_pred CeeEecCCcCcCCccccccccEEEecCCCccCC---CCCCeEEEEEEEeCCCCEEEe
Q 000335 129 NEIFYSFHKDEIPAASLLHPCKVAFLPKGIELP---SGIGSFVCRKVYDITNKCLWW 182 (1646)
Q Consensus 129 NELFLSdh~DdnpLeSIlGKC~Vlsl~ey~dlP---~g~dvFfCRr~YD~~tKrF~~ 182 (1646)
+|||+|+|.|.+|+++|+|||.|+.+.+|..+. ...++|||+..||+.+++|..
T Consensus 82 rELF~S~~~d~~p~~~IrGKC~V~~~~d~~~l~~~~~~~d~Ff~~~~YDP~~k~l~~ 138 (164)
T cd04709 82 RELFLSRQVETLPATHIRGKCSVTLLNDTESARSYLAREDTFFYSLVYDPEQKTLLA 138 (164)
T ss_pred ceeEEecccccccHHHeeeeEEEEEehhhhhhhhccCCCCEEEEEEEECCCCCeecc
Confidence 999999999999999999999999999988765 347999999999999999944
No 12
>cd04710 BAH_fungalPHD BAH, or Bromo Adjacent Homology domain, as present in fungal proteins containing PHD domains. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.86 E-value=9.7e-22 Score=201.30 Aligned_cols=115 Identities=21% Similarity=0.373 Sum_probs=97.9
Q ss_pred EEEECCEEEeeCCEEEEcCCCC-CCCeEEEEEEEeecCC------------CcEEEEEEEEeccccccCCcccccCCCCC
Q 000335 63 FFSQDGRKISVGDCALFKPPQD-SPPFIGIIRSLTAGKE------------NKLTLSVNWLYRPAEVKLGKGFLLEAAPN 129 (1646)
Q Consensus 63 Sf~vDGeeYrVGDcVLVkpedd-~pPyIArI~sIwEd~d------------Ge~~VrVqWFYRPeET~lgkg~~~~aDpN 129 (1646)
-+..+|..|++||||||.+++. .|+|||||++|+...+ +..+|+|+|||||+||.... .+|++
T Consensus 4 ~~~~~g~~~~vgD~Vyv~~~~~~ePyyIgrI~e~~~~~~~~~~~~~~~~~~~~~~vrV~wfYRp~Di~~~~----~~d~r 79 (135)
T cd04710 4 LVLKNGELLKVNDHIYMSSEPPGEPYYIGRIMEFVPKHEFPSGIHARVFPASYFQVRLNWYYRPRDISRRV----VADSR 79 (135)
T ss_pred EEccCCeEEeCCCEEEEecCCCCCCCEEEEEEEEEecCCCCccccccccCCCcEEEEEEEEeCHHHcCCcc----cCCce
Confidence 3557899999999999999764 5667999999998532 34689999999999995433 45889
Q ss_pred eeEecCCcCcCCccccccccEEEecCCCccCC---CCCCeEEEEEEEeCCCCEEE
Q 000335 130 EIFYSFHKDEIPAASLLHPCKVAFLPKGIELP---SGIGSFVCRKVYDITNKCLW 181 (1646)
Q Consensus 130 ELFLSdh~DdnpLeSIlGKC~Vlsl~ey~dlP---~g~dvFfCRr~YD~~tKrF~ 181 (1646)
|||+|+|.|.+|+++|.|||+|++..++..+. ..+++|||.++||+..++|+
T Consensus 80 elf~S~h~d~~p~~si~gKC~V~~~~di~~l~~~~~~~~~Fyf~~lyD~~~~r~~ 134 (135)
T cd04710 80 LLYASMHSDICPIGSVRGKCTVRHRDQIPDLEEYKKRPNHFYFDQLFDRYILRYY 134 (135)
T ss_pred EEEEEeeEeeechHHEEeEEEEEEecccchhhhhccCCCEEEEEeeeCcchhhcc
Confidence 99999999999999999999999998876544 34799999999999999886
No 13
>cd04760 BAH_Dnmt1_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.85 E-value=1.7e-21 Score=196.90 Aligned_cols=109 Identities=19% Similarity=0.385 Sum_probs=95.6
Q ss_pred CEEEeeCCEEEEcCCC-CCCCeEEEEEEEeecCCCcEEEEEEEEeccccccCCcccccCCCCCeeEecCCcCcCCccccc
Q 000335 68 GRKISVGDCALFKPPQ-DSPPFIGIIRSLTAGKENKLTLSVNWLYRPAEVKLGKGFLLEAAPNEIFYSFHKDEIPAASLL 146 (1646)
Q Consensus 68 GeeYrVGDcVLVkped-d~pPyIArI~sIwEd~dGe~~VrVqWFYRPeET~lgkg~~~~aDpNELFLSdh~DdnpLeSIl 146 (1646)
|.+|++||||+|++++ ..+||||+|..||++.++.+|||++||||++||.+++. .+++|||||++|+++++.+|.
T Consensus 1 g~~i~vGD~V~v~~~~~~~p~~I~rV~~mfe~~~g~k~~h~rWf~Rg~dTVlG~~----~~~kEvFlsd~c~d~~l~~I~ 76 (124)
T cd04760 1 GEELEAGDCVSVKPDDPTKPLYIARVTYMWKDSIGGKMFHAHWFCRGSDTVLGET----SDPLELFLVDECEDMALSSIH 76 (124)
T ss_pred CCEEecCCEEEEecCCCCCCcEEEEEhhheecCCCCcEEEEEEEEECCccccccc----CCCcEEEeecccCCcchHHhe
Confidence 5789999999999864 57889999999999999999999999999999999873 678999999999999999999
Q ss_pred cccEEEecCCC--------ccCC-----CCCCeEEEEEEEeCCCCEE
Q 000335 147 HPCKVAFLPKG--------IELP-----SGIGSFVCRKVYDITNKCL 180 (1646)
Q Consensus 147 GKC~Vlsl~ey--------~dlP-----~g~dvFfCRr~YD~~tKrF 180 (1646)
+||+|+....- .+.+ .+.++|||+++||+...+|
T Consensus 77 ~Kv~V~~~~p~~~w~~~~g~~~~~~~~~ddg~tffyq~~yd~~~arf 123 (124)
T cd04760 77 GKVNVIYKAPSENWSMEGGMDEEDEIFEDDGKTFFYQKWYDPECARF 123 (124)
T ss_pred eeeEEEEeCCCcchhhhcCCCCccccccCCCCeEEEEEeeChhhhcc
Confidence 99999987643 2222 3469999999999987776
No 14
>cd04712 BAH_DCM_I BAH, or Bromo Adjacent Homology domain, as present in DNA (Cytosine-5)-methyltransferases (DCM) 1. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.84 E-value=1.2e-20 Score=192.01 Aligned_cols=113 Identities=19% Similarity=0.257 Sum_probs=97.2
Q ss_pred CCEEEeeCCEEEEcCCCCC-----------CCeEEEEEEEeecCCCcEEEEEEEEeccccccCCcccccCCCCCeeEecC
Q 000335 67 DGRKISVGDCALFKPPQDS-----------PPFIGIIRSLTAGKENKLTLSVNWLYRPAEVKLGKGFLLEAAPNEIFYSF 135 (1646)
Q Consensus 67 DGeeYrVGDcVLVkpedd~-----------pPyIArI~sIwEd~dGe~~VrVqWFYRPeET~lgkg~~~~aDpNELFLSd 135 (1646)
.|..|+|||+|+|.+++.. +|||++|..||++.+|.+||+++|||||+||.++. .+++||||||+
T Consensus 2 ~~~~i~vGD~V~v~~d~~~~~~~~~~~~~~~~~i~~V~~~~e~~~g~~~~h~~W~yrp~eTv~g~----~~~~~ElFLSd 77 (130)
T cd04712 2 HGLTIRVGDVVSVERDDADSTTKWNDDHRWLPLVQFVEYMKKGSDGSKMFHGRWLYRGCDTVLGN----YANERELFLTN 77 (130)
T ss_pred CCCEEeCCCEEEEcCCCCCccccccccccccceEEEEEEeeecCCCceEEEEEEEEcchhccccc----cCCCceEEEec
Confidence 5788999999999998643 78999999999999999999999999999999987 35689999999
Q ss_pred CcCcCCcc----ccccccEEEecCCCccCCCCCCeEEEEEEEeCCCCEEEecC
Q 000335 136 HKDEIPAA----SLLHPCKVAFLPKGIELPSGIGSFVCRKVYDITNKCLWWLT 184 (1646)
Q Consensus 136 h~DdnpLe----SIlGKC~Vlsl~ey~dlP~g~dvFfCRr~YD~~tKrF~~Lt 184 (1646)
||+++++. .|++||.|++...+.. ....+.|||+..|+++.+.|..|.
T Consensus 78 ~c~~~~~~~~~~~I~~k~~V~~~~~~~~-~~~~~~F~r~syy~~e~~~F~~l~ 129 (130)
T cd04712 78 ECTCLELDLLSTEIKGVHKVDWSGTPWG-KGLPEFFVRQSYYWPERGAFTSLK 129 (130)
T ss_pred cccccccccccceeEEEEEEEEecCcCC-cCCCCEEEEEEEECccCCceEcCC
Confidence 99999999 9999999998876653 112456777777777999998764
No 15
>cd04720 BAH_Orc1p_Yeast BAH, or Bromo Adjacent Homology domain, as present in Orc1p, which again is part of the Saccharomyces cerevisiae Sir1-origin recognition complex, and as present in Sir3p. The Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.84 E-value=6.7e-21 Score=203.00 Aligned_cols=121 Identities=23% Similarity=0.374 Sum_probs=102.9
Q ss_pred EEEE-CCEEEeeCCEEEEcCCCCCCCeEEEEEEEeecCC-CcEEEEEEEEeccccccCCcc--ccc-----CCCCCeeEe
Q 000335 63 FFSQ-DGRKISVGDCALFKPPQDSPPFIGIIRSLTAGKE-NKLTLSVNWLYRPAEVKLGKG--FLL-----EAAPNEIFY 133 (1646)
Q Consensus 63 Sf~v-DGeeYrVGDcVLVkpedd~pPyIArI~sIwEd~d-Ge~~VrVqWFYRPeET~lgkg--~~~-----~aDpNELFL 133 (1646)
.... +|.+|+|||||+|++++..++|||+|++|+.+.. +.+.++|+|||||.|+...+. .+. ...+|||||
T Consensus 44 l~R~~d~~~~~vGD~Vlik~~~~~~~~V~iI~ei~~~~~~~~v~i~v~Wy~r~~Ei~~~~~~~~~~~~~~~~~~~nElfl 123 (179)
T cd04720 44 LARDSDGLELSVGDTILVKDDVANSPSVYLIHEIRLNTLNNEVELWVMWFLRWFEINPARYYKQFDPEFRSESNKNELYL 123 (179)
T ss_pred EEEccCCeEEeCCCEEEEeCCCCCCCEEEEEEEEEeCCCCCEEEEEEEEcCCHHHcccccccccccchhcccCCCceEEE
Confidence 4444 8999999999999998778999999999998765 568999999999999966432 222 234799999
Q ss_pred cCCcCcCCccccccccEEEecCCCccCC----CCCCeEEEEEEEeCCCCEEEec
Q 000335 134 SFHKDEIPAASLLHPCKVAFLPKGIELP----SGIGSFVCRKVYDITNKCLWWL 183 (1646)
Q Consensus 134 Sdh~DdnpLeSIlGKC~Vlsl~ey~dlP----~g~dvFfCRr~YD~~tKrF~~L 183 (1646)
|.|+|++++.+|++||+||+..+|.++. .+..+||||++||+.++.|.|+
T Consensus 124 T~~~d~i~l~~Ii~k~~Vls~~ef~~~~~~~~~~~~~F~cR~~~d~~~~~F~~~ 177 (179)
T cd04720 124 TAELSEIKLKDIIDKANVLSESEFNDLSTDDKNGERTFFCRYACEPDGEEFVWI 177 (179)
T ss_pred ecccceEEhhheeeeEEEecHHHhhhhcccccCCCceEEEEEEEeCCCCeEccc
Confidence 9999999999999999999999988654 2478999999999999999884
No 16
>cd04708 BAH_plantDCM_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.83 E-value=1.1e-20 Score=204.09 Aligned_cols=121 Identities=22% Similarity=0.302 Sum_probs=101.3
Q ss_pred EEECCEEEeeCCEEEEcCC------------------CCCCCeEEEEEEEeecCCC------cEEEEEEEEeccccccCC
Q 000335 64 FSQDGRKISVGDCALFKPP------------------QDSPPFIGIIRSLTAGKEN------KLTLSVNWLYRPAEVKLG 119 (1646)
Q Consensus 64 f~vDGeeYrVGDcVLVkpe------------------dd~pPyIArI~sIwEd~dG------e~~VrVqWFYRPeET~lg 119 (1646)
|+++|++|+|||+|||.|+ +..+.+||+|.+|+..+++ ..+|+|+|||||+||..
T Consensus 1 f~~~Gv~Y~vgD~VYv~p~~f~~~~~~~~~~~~G~N~~~~p~~I~qI~ei~~~k~~~~~~~~~~~vrVrwFYRPEdt~~- 79 (202)
T cd04708 1 FVYDGVTYSVGDFLYVSPDAFAEEERERATFKAGRNVGLKAFVVCQVLEIVVEKESKQADVASTQVKVRRFYRPEDVSP- 79 (202)
T ss_pred CcCCCEEEecCCeEEECcccccccccccccccccccCCCCCcEEEEEEEEEecccCCCCCCcceEEEEEEEechhhcCc-
Confidence 5789999999999999998 2234559999999875443 67999999999999854
Q ss_pred cccccCCCCCeeEecCCcCcCCccccccccEEEecCCCccCC---CCCCeEEEEEEEeCCCCEEEecCcc
Q 000335 120 KGFLLEAAPNEIFYSFHKDEIPAASLLHPCKVAFLPKGIELP---SGIGSFVCRKVYDITNKCLWWLTDQ 186 (1646)
Q Consensus 120 kg~~~~aDpNELFLSdh~DdnpLeSIlGKC~Vlsl~ey~dlP---~g~dvFfCRr~YD~~tKrF~~Ltde 186 (1646)
+. .+.++.+|||||++.+++++.+|.|||+|++...+.++. ...++|||++.||+.++.|..|+..
T Consensus 80 ~~-~y~sd~rely~Sde~~~~~~~~I~GKC~V~~~~d~~~~~~~~~~~~~Ffc~~~Yd~~tg~f~~lP~~ 148 (202)
T cd04708 80 EK-AYASDIREVYYSEDTLTVPVEAVEGKCEVRKKSDLPDSDAPVIFEHVFFCELLYDPAKGSLKQLPPN 148 (202)
T ss_pred cc-ceecCceeEEEeccceeechhHcceEEEEEecCcchhhhccccCCCceEEEEEEcCCCCccCCCCch
Confidence 22 234588999999999999999999999999998876543 3479999999999999999887643
No 17
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.75 E-value=2.1e-19 Score=185.92 Aligned_cols=96 Identities=18% Similarity=0.295 Sum_probs=87.1
Q ss_pred CCCeEEEEEEEeecCCCcEEEEEEEEeccccccCCcccccCCCCCeeEecCCcCcCCccccccccEEEecCCCccCC-CC
Q 000335 85 SPPFIGIIRSLTAGKENKLTLSVNWLYRPAEVKLGKGFLLEAAPNEIFYSFHKDEIPAASLLHPCKVAFLPKGIELP-SG 163 (1646)
Q Consensus 85 ~pPyIArI~sIwEd~dGe~~VrVqWFYRPeET~lgkg~~~~aDpNELFLSdh~DdnpLeSIlGKC~Vlsl~ey~dlP-~g 163 (1646)
..+|||+|+.||++. |..+|+++|||||+||..++..++. .+|||+|+|+|++++++|+|||.||+..+|.++. .+
T Consensus 51 ~~~~vArIekiW~~~-G~~~~~grWy~rPEET~~gr~~~~~--~kEvFlS~~~d~~~~~~I~gkC~V~~~keY~k~e~~g 127 (148)
T cd04718 51 GDLWLARIEKLWEEN-GTYWYAARWYTLPEETHMGRQPHNL--RRELYLTNDFADIEMECILRHCSVKCPKEFRDASNDG 127 (148)
T ss_pred CchHHHHHHHHHhcc-CceEEEEEEEeCchhccCccccccc--cceeeeccccccccHHHHhcccEEcCHHHcccccCCC
Confidence 469999999999986 8999999999999999887755443 3999999999999999999999999999998765 56
Q ss_pred CCeEEEEEEEeCCCCEEEec
Q 000335 164 IGSFVCRKVYDITNKCLWWL 183 (1646)
Q Consensus 164 ~dvFfCRr~YD~~tKrF~~L 183 (1646)
.++|||++.||..++.|+.|
T Consensus 128 ~Dvy~Ce~~Yd~~~~~Fkr~ 147 (148)
T cd04718 128 DDVFLCEYEYDVHWQSFKRL 147 (148)
T ss_pred CceEEEEEEEhhhcCceeec
Confidence 89999999999999999876
No 18
>cd04719 BAH_Orc1p_animal BAH, or Bromo Adjacent Homology domain, as present in animal homologs of Saccharomyces cerevisiae Orc1p. Orc1 is part of the Yeast Sir1-origin recognition complex. The Orc1p BAH doman functions in epigenetic silencing. In vertebrates, a similar ORC protein complex exists, which has been shown essential for DNA replication in Xenopus laevis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.73 E-value=6.5e-18 Score=172.09 Aligned_cols=111 Identities=24% Similarity=0.384 Sum_probs=90.9
Q ss_pred EEEeeCCEEEEcCCCCCCCeEEEEEEEeecCCC---cEEEEEEEEeccccccCCccccc--CCCCCeeEecCCc---CcC
Q 000335 69 RKISVGDCALFKPPQDSPPFIGIIRSLTAGKEN---KLTLSVNWLYRPAEVKLGKGFLL--EAAPNEIFYSFHK---DEI 140 (1646)
Q Consensus 69 eeYrVGDcVLVkpedd~pPyIArI~sIwEd~dG---e~~VrVqWFYRPeET~lgkg~~~--~aDpNELFLSdh~---Ddn 140 (1646)
.+|+|||||||.+++..+||||+|++||++.++ ..+++|||||||+|+........ ...++|||+++|. +++
T Consensus 2 ~~i~vGd~VlI~~~d~~~~yVAkI~~i~e~~~~~~~~~~~~VqWy~R~~Ev~~~~~~~~~~~~~~~EvF~~~~~~~~~~i 81 (128)
T cd04719 2 LTIEVGDFVLIEGEDADGPDVARILHLYEDGNEDDDPKRAIVQWFSRPSEVPKNKRKLLGREPHSQEVFFYSRSSCDNDI 81 (128)
T ss_pred eEEecCCEEEEECCCCCCCcEeeehhhhccccCCcccceEEEEcccChHHccccchhhccCCCCCcEEEEecCccccCcE
Confidence 479999999999987688999999999998765 56999999999999964321111 2357999999987 489
Q ss_pred CccccccccEEEecCCCccCC--C--CCCeEEEEEEEeCCCCE
Q 000335 141 PAASLLHPCKVAFLPKGIELP--S--GIGSFVCRKVYDITNKC 179 (1646)
Q Consensus 141 pLeSIlGKC~Vlsl~ey~dlP--~--g~dvFfCRr~YD~~tKr 179 (1646)
.+++|.|||.|+.++.|.+++ . ....||.|+.||....+
T Consensus 82 ~~etI~gkc~V~~~~~y~~l~~~~~~~~~~~F~r~~~~~k~~~ 124 (128)
T cd04719 82 DAETIIGKVRVEPVEPKTDLPETKKKTGGPLFVKRYWDTKTFR 124 (128)
T ss_pred eHHHcccEEEEEEcCCccchhhhccccCceEEEEEEecccccc
Confidence 999999999999999999887 2 35788888888866543
No 19
>cd04711 BAH_Dnmt1_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.64 E-value=2e-16 Score=161.84 Aligned_cols=100 Identities=21% Similarity=0.305 Sum_probs=81.9
Q ss_pred CCCCeEEEEEEEeecCCC-------cEEEEEEEEeccccccCCcccccCCCCCeeEecCCcCcCCccccccccEEEecCC
Q 000335 84 DSPPFIGIIRSLTAGKEN-------KLTLSVNWLYRPAEVKLGKGFLLEAAPNEIFYSFHKDEIPAASLLHPCKVAFLPK 156 (1646)
Q Consensus 84 d~pPyIArI~sIwEd~dG-------e~~VrVqWFYRPeET~lgkg~~~~aDpNELFLSdh~DdnpLeSIlGKC~Vlsl~e 156 (1646)
+.++|||||++|...+++ .++|+|+|||||+||..+...-+..|.||||+|+|.+.+++.+|.|||.|++..+
T Consensus 24 ~ePy~VgrI~eI~~~k~~~~k~~~~~ikvrV~~fYRPEdi~~g~~~ayhsDirevy~Sd~~~~~~~~~I~GKC~V~~~~d 103 (137)
T cd04711 24 PEPFRIGRIKEIFCAKRSNGKPNESDIKLRINKFYRPENTHKGFKATYHADINMLYWSDEEATVDFSAVQGRCTVEYGED 103 (137)
T ss_pred CCCcEEEEEEEEecCCCCCCCCCccceEEEEEEEecccccccccccccccceeeEEeecceeecChhhccceEEEEeccc
Confidence 456779999999875432 4689999999999998865544456899999999999999999999999997665
Q ss_pred Ccc-C---C-CCCCeEEEEEEEeCCCCEEEec
Q 000335 157 GIE-L---P-SGIGSFVCRKVYDITNKCLWWL 183 (1646)
Q Consensus 157 y~d-l---P-~g~dvFfCRr~YD~~tKrF~~L 183 (1646)
..+ + . .+.+.|||++.||..++.|..+
T Consensus 104 i~~s~~~y~~~gpd~Fyf~~~Y~a~t~~F~d~ 135 (137)
T cd04711 104 LPESVQEYSGGGPDRFYFLEAYNAKTKSFEDP 135 (137)
T ss_pred cchhHHHHhcCCCcceEEhhhhccccCcccCC
Confidence 332 2 2 4579999999999999998654
No 20
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=99.36 E-value=4.3e-13 Score=125.69 Aligned_cols=58 Identities=45% Similarity=0.652 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHhcCCCCcHhhhhhcCCCcccccccCCCCHHHHHHHHHHHHHHHHHHH
Q 000335 377 VEEFLLILLRALDKLPVNLNALQMCNIGKSVNHLRTHKNVEIQKKARSLVDTWKKRVE 434 (1646)
Q Consensus 377 ~ee~lLeLLr~Lk~lPiTlelLk~T~IGktVnkLRKH~n~eI~kLAk~LVkkWKk~Vd 434 (1646)
.++.|+++|++|+.+|||+++|+.|+||+.||+||||.|++|+++|+.||++||++|+
T Consensus 17 ~~~~~l~~L~~L~~~~~t~~~L~~T~iG~~v~~Lrkh~~~~I~~~A~~Li~~WK~~v~ 74 (75)
T smart00509 17 EVSRCLDILKKLKKLPITVDLLEETRIGKKVNGLRKHKNEEIRKLAKKLIKSWKKLVY 74 (75)
T ss_pred CHHHHHHHHHHHhcCCCCHHHHHHCcHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhc
Confidence 3689999999999999999999999999999999999999999999999999999985
No 21
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.32 E-value=1.1e-12 Score=159.74 Aligned_cols=122 Identities=23% Similarity=0.267 Sum_probs=107.2
Q ss_pred ceEE-EEECCEEEeeCCEEEEcCCCC-CCCeEEEEEEEeecCCCcEEEEEEEEeccccccC-CcccccCCCCCeeEecCC
Q 000335 60 SVTF-FSQDGRKISVGDCALFKPPQD-SPPFIGIIRSLTAGKENKLTLSVNWLYRPAEVKL-GKGFLLEAAPNEIFYSFH 136 (1646)
Q Consensus 60 ~YeS-f~vDGeeYrVGDcVLVkpedd-~pPyIArI~sIwEd~dGe~~VrVqWFYRPeET~l-gkg~~~~aDpNELFLSdh 136 (1646)
++.. +.++|..|.+||+||+....+ ..|.|++|.++|+..+|..|+.++|||||.+|.+ ..+.|+. +|+|.+..
T Consensus 179 ~~~~~~~i~~~~~~~gd~vlv~~~~d~~~p~v~~Ier~w~~~dg~k~~~~~w~~rP~~T~H~a~r~F~k---~Evfkt~~ 255 (629)
T KOG1827|consen 179 HELGPVEIDGTKYIVGDYVLVQNPADNLKPIVAQIERLWKLPDGEKWPQGCWIYRPEETVHRADRKFYK---QEVFKTSL 255 (629)
T ss_pred ccCCCccccCcccccCceeeecCcccccCCceeeecccccCcccccccceeEeeCCccCccccccchhc---ccceeccc
Confidence 3344 789999999999999998755 8899999999999999999999999999999966 5565666 99999999
Q ss_pred cCcCCccccccccEEEecCCCccCCC----CCCeEEEEEEEeCCCCEEEecC
Q 000335 137 KDEIPAASLLHPCKVAFLPKGIELPS----GIGSFVCRKVYDITNKCLWWLT 184 (1646)
Q Consensus 137 ~DdnpLeSIlGKC~Vlsl~ey~dlP~----g~dvFfCRr~YD~~tKrF~~Lt 184 (1646)
+.+.++..|+|+|.|+++.+|..... ..++|+|.+.|+...+.|-++.
T Consensus 256 ~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~dv~lcesRyn~~~K~f~kir 307 (629)
T KOG1827|consen 256 YRDDLVQRLLGKCYVMKPTEYISGDPENLSEEDVFLCESRYNEQLKKFNKIR 307 (629)
T ss_pred ccccHHHHhhcceEEeehhHhhhcCcccccccceeeEEeeeccchhhhcccc
Confidence 99999999999999999999885442 3699999999999999886643
No 22
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=99.31 E-value=2e-12 Score=121.22 Aligned_cols=58 Identities=47% Similarity=0.696 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHhcCCCCcHhhhhhcCCCcccccccCCCCHHHHHHHHHHHHHHHHHHH
Q 000335 377 VEEFLLILLRALDKLPVNLNALQMCNIGKSVNHLRTHKNVEIQKKARSLVDTWKKRVE 434 (1646)
Q Consensus 377 ~ee~lLeLLr~Lk~lPiTlelLk~T~IGktVnkLRKH~n~eI~kLAk~LVkkWKk~Vd 434 (1646)
..+.++++|+.|+.+|||+++|++|+||+.||+||||.+++|+++|+.||++||+.|+
T Consensus 19 ~~~~~~~~L~~L~~~~it~~~L~~T~iG~~V~~Lrkh~~~~i~~~A~~Lv~~Wk~~v~ 76 (76)
T cd00183 19 EVSRLLDLLRLLKKLPLTVEILKETRIGKKVNSLRKHSNEKIRKLAKALIKSWKKLVD 76 (76)
T ss_pred CHHHHHHHHHHHhcCCCCHHHHHHCCHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcC
Confidence 4789999999999999999999999999999999999999999999999999999873
No 23
>TIGR01385 TFSII transcription elongation factor S-II. This model represents eukaryotic transcription elongation factor S-II. This protein allows stalled RNA transcription complexes to perform a cleavage of the nascent RNA and restart at the newly generated 3-prime end.
Probab=99.17 E-value=8.6e-11 Score=134.72 Aligned_cols=63 Identities=33% Similarity=0.523 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhcCCCCcHhhhhhcCCCcccccccCCCCHHHHHHHHHHHHHHHHHHHHHhhcC
Q 000335 378 EEFLLILLRALDKLPVNLNALQMCNIGKSVNHLRTHKNVEIQKKARSLVDTWKKRVEAEMDAR 440 (1646)
Q Consensus 378 ee~lLeLLr~Lk~lPiTlelLk~T~IGktVnkLRKH~n~eI~kLAk~LVkkWKk~Vd~e~~~k 440 (1646)
++.||+||++|+.++||+++|++|+||+.||+||||.+++|++||+.||++||++|+.++..+
T Consensus 20 ~~~~l~~L~~L~~~~~t~~lL~~T~IG~~Vn~lrkh~~~~I~~lAk~li~~WK~~v~~~k~~~ 82 (299)
T TIGR01385 20 VEQCLDILHQLKEFPPTEELLQETKVGVKVNKLRKHPNEDISKLAKKIIKSWKKVVDKNKSDH 82 (299)
T ss_pred HHHHHHHHHHHhcCCCcHHHHhhCchhHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 678999999999999999999999999999999999999999999999999999999875443
No 24
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=99.12 E-value=2.3e-11 Score=106.47 Aligned_cols=52 Identities=44% Similarity=0.802 Sum_probs=47.8
Q ss_pred HHHHHhcCCCCcHhhhhhcCCCcccccccCC-CCHHHHHHHHHHHHHHHHHHH
Q 000335 383 ILLRALDKLPVNLNALQMCNIGKSVNHLRTH-KNVEIQKKARSLVDTWKKRVE 434 (1646)
Q Consensus 383 eLLr~Lk~lPiTlelLk~T~IGktVnkLRKH-~n~eI~kLAk~LVkkWKk~Vd 434 (1646)
++|+.|+.+|||.++|++|+||++|+.|||| .+++|+++|+.||++||++|+
T Consensus 1 ~iL~~L~~l~it~~~L~~T~IGk~V~~l~k~~~~~~i~~~A~~Li~~Wk~~v~ 53 (53)
T PF08711_consen 1 EILKVLEKLPITVELLKSTGIGKAVNKLRKHSENPEIRKLAKELIKKWKRIVD 53 (53)
T ss_dssp HHHHHHHCSS-SHHHHHHHSHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHH-
T ss_pred CHHHHhhcCCCCHHHHHhCChhHHHHHHHcCCCCHHHHHHHHHHHHHHhHhcC
Confidence 5899999999999999999999999999999 999999999999999999985
No 25
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=98.80 E-value=5.6e-10 Score=130.37 Aligned_cols=131 Identities=23% Similarity=0.336 Sum_probs=102.9
Q ss_pred EEeeCCEEEEcCCCCCCCeEEEEEEEeecCCCcEEEEEEEEeccccccC--------Ccc-----------------c--
Q 000335 70 KISVGDCALFKPPQDSPPFIGIIRSLTAGKENKLTLSVNWLYRPAEVKL--------GKG-----------------F-- 122 (1646)
Q Consensus 70 eYrVGDcVLVkpedd~pPyIArI~sIwEd~dGe~~VrVqWFYRPeET~l--------gkg-----------------~-- 122 (1646)
.|+|||+|||.....+++.|-+|+++.+..+|.+..+|-.|||..||.. ..+ .
T Consensus 5 ~y~vgd~vYf~~sss~PYliRrIEELnKTa~GnVeAkvVc~~RRRDIs~~L~~lAD~~ar~~~~y~a~~~a~~~~e~e~E 84 (693)
T KOG3554|consen 5 MYRVGDYVYFENSSSNPYLIRRIEELNKTANGNVEAKVVCYLRRRDISSHLLKLADKHARRFDNYAAPEAAPEATEAEIE 84 (693)
T ss_pred cceecceEEEecCCCChHHHHHHHHHhccccCCcceEEEEEEEccchHHHHHHHHHHHhhhcccccCcccCcccchhhhh
Confidence 7999999999987556444999999999999999999999999999841 001 0
Q ss_pred ---------------ccCCCCCeeEecCCcCcCCccccccccEEEecCCCccCC---CCCCeEEEEEEEeCCCCEEEecC
Q 000335 123 ---------------LLEAAPNEIFYSFHKDEIPAASLLHPCKVAFLPKGIELP---SGIGSFVCRKVYDITNKCLWWLT 184 (1646)
Q Consensus 123 ---------------~~~aDpNELFLSdh~DdnpLeSIlGKC~Vlsl~ey~dlP---~g~dvFfCRr~YD~~tKrF~~Lt 184 (1646)
.+....+|||+|...+..|+..|.|||.|.-+.+.+.+. ...++||+..+||+..++| |.
T Consensus 85 Ee~e~p~~vdlt~~qrhqLrhrElFlsRQ~EsLPAthIRGKCsV~LLnete~~~~YL~~eDtFfySLVyDP~~kTL--LA 162 (693)
T KOG3554|consen 85 EESECPAPVDLTEKQRHQLRHRELFLSRQSESLPATHIRGKCSVTLLNETESLQSYLEKEDTFFYSLVYDPNQKTL--LA 162 (693)
T ss_pred hhccCCCcCCCCHHHHHHHHHHHHHHhhhhccCchhhhccceeEEEecChHHHHhhccccceeEEEeeeccchhhh--hc
Confidence 011246899999999999999999999999887765433 3478999999999999988 45
Q ss_pred cchhh---hhhhhhhHHHHhh
Q 000335 185 DQDYI---NERQEEVDQLLYK 202 (1646)
Q Consensus 185 dedY~---~e~qeEVD~LLdk 202 (1646)
|+.-+ +..|.+|+..|.+
T Consensus 163 DkGeIRVG~kYQA~i~e~l~E 183 (693)
T KOG3554|consen 163 DKGEIRVGEKYQADIPEWLEE 183 (693)
T ss_pred cCcceeecccccccchHHHHh
Confidence 65433 3357788887774
No 26
>KOG1105 consensus Transcription elongation factor TFIIS/Cofactor of enhancer-binding protein Sp1 [Transcription]
Probab=98.72 E-value=1.6e-08 Score=115.65 Aligned_cols=60 Identities=42% Similarity=0.608 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHhcCCCCcHhhhhhcCCCcccc-cccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 000335 377 VEEFLLILLRALDKLPVNLNALQMCNIGKSVN-HLRTHKNVEIQKKARSLVDTWKKRVEAE 436 (1646)
Q Consensus 377 ~ee~lLeLLr~Lk~lPiTlelLk~T~IGktVn-kLRKH~n~eI~kLAk~LVkkWKk~Vd~e 436 (1646)
+.+.+|++|.+|+++|||+++|++|+||+.|| .|++|.|++|.++|+.||+.||++|+..
T Consensus 21 n~~~~ld~l~~L~~~pvt~ell~~Tr~g~~vn~~~Kk~~n~ev~~~ak~Lik~Wkk~~~~~ 81 (296)
T KOG1105|consen 21 NVEAALDLLKRLKKIPVTLELLQETRTGMGVNEVLKKHKNEEVRSLAKKLIKSWKKLVDKS 81 (296)
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHhhHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 47899999999999999999999999999999 5568899999999999999999999875
No 27
>PLN02976 amine oxidase
Probab=97.21 E-value=0.0019 Score=86.87 Aligned_cols=106 Identities=23% Similarity=0.313 Sum_probs=84.8
Q ss_pred cccchhhhHHHHhccchhhHHHHHHHhchhhHHHHHHHHhhcccCCCCCCCCCCCChHHHHHHHHHHhcCCCCcHhhhhh
Q 000335 321 LVCRSLLAGVVAATDKFDCLNWFVQLRGLLVFDEWLQEVHKGKIGDAGSPRDGDKSVEEFLLILLRALDKLPVNLNALQM 400 (1646)
Q Consensus 321 L~~R~~l~~Vi~~T~~qd~L~~Fvq~~Gl~vL~eWLqE~~K~k~gd~~sp~~~dks~ee~lLeLLr~Lk~lPiTlelLk~ 400 (1646)
.+||.-|++-+..--...+-..-++..||.+||+||-+.. +| .-..++...|+.|-.++.++-+|+.
T Consensus 1256 ~~gr~~~~~~~~~~~~~~~~~~a~~~~gl~~l~~w~~~~~-~~------------~~~~l~~~~~~ll~~~~~d~~a~r~ 1322 (1713)
T PLN02976 1256 TAGRLHLAKELLNLPVETLKSFAGTKEGLATLNSWILDSM-GK------------DGTQLLRHCVRLLVLVSTDLLAVRL 1322 (1713)
T ss_pred cccHHHHHHHHHhCCHHHHHHHhcccchHHHHHHHHHHHh-cc------------cHHHHHHHHHHHHhhcchhHHHHHh
Confidence 5888666666544343344444477999999999998774 32 1256888888999899999999999
Q ss_pred cCCCcccc-cccCCCCHHHHHHHHHHHHHHHHHHHHHhhc
Q 000335 401 CNIGKSVN-HLRTHKNVEIQKKARSLVDTWKKRVEAEMDA 439 (1646)
Q Consensus 401 T~IGktVn-kLRKH~n~eI~kLAk~LVkkWKk~Vd~e~~~ 439 (1646)
..|||+|+ ++--|.+.+|+.+|+.|+..|.+++..++..
T Consensus 1323 sg~~~~~k~~~~~h~~~~~r~~a~~~~~~w~~~~~~~~~~ 1362 (1713)
T PLN02976 1323 SGIGKTVKEKVCVHTSRDIRAIASQLVSVWLEVFRREKAS 1362 (1713)
T ss_pred ccchHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999996 4568999999999999999999999988853
No 28
>KOG1793 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.09 E-value=0.012 Score=70.37 Aligned_cols=122 Identities=25% Similarity=0.384 Sum_probs=86.7
Q ss_pred hhHHHHHHhhccccccc-ccccccc------hhhhHHHHhccchhhHHHHHHHhchhhHHHHHHHHhhcccCCCCCCCCC
Q 000335 301 DGVEKLVQLMVPERNDK-KIDLVCR------SLLAGVVAATDKFDCLNWFVQLRGLLVFDEWLQEVHKGKIGDAGSPRDG 373 (1646)
Q Consensus 301 e~V~klV~LM~~~~~~k-k~~L~~R------~~l~~Vi~~T~~qd~L~~Fvq~~Gl~vL~eWLqE~~K~k~gd~~sp~~~ 373 (1646)
+.|..|+..|...-++. -.+.-++ -+|-.|..--.++.+...||-.+=|.+|.+||.=+- |++-|.
T Consensus 159 ~~v~~l~~~m~~aa~~D~~~N~e~kPA~~Klk~Lp~v~~vL~k~~L~et~LDngvL~~lk~WLePLP-----D~SLPa-- 231 (417)
T KOG1793|consen 159 DEVSRLMERMEDAAEKDRELNREGKPATQKLKLLPLVVAVLSKKALQETFLDNGVLDSLKEWLEPLP-----DGSLPA-- 231 (417)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCchHHHHhccHHHHHHHhhhhHHHHHHhhhHHHHHHHHhccCC-----CCCCcc--
Confidence 67888888887543221 0111111 122233333346788899999999999999994333 333342
Q ss_pred CCChHHHHHHHHHHhcCCCCcH-hhhhhcCCCcccccccCCCC--HHHHHHHHHHHHHHHHHH
Q 000335 374 DKSVEEFLLILLRALDKLPVNL-NALQMCNIGKSVNHLRTHKN--VEIQKKARSLVDTWKKRV 433 (1646)
Q Consensus 374 dks~ee~lLeLLr~Lk~lPiTl-elLk~T~IGktVnkLRKH~n--~eI~kLAk~LVkkWKk~V 433 (1646)
-.-=..||..|..|||-. ++|++..+|+.|==|.||.. .+++.+|..||..|-.-|
T Consensus 232 ----l~Ir~~ll~iL~dlpi~~~E~Lk~SGlGkvVmflsks~ket~~nkrlA~kLI~eWsRpI 290 (417)
T KOG1793|consen 232 ----LNIRKSLLDILNDLPIDKREHLKESGLGKVVMFLSKSPKETKENKRLANKLINEWSRPI 290 (417)
T ss_pred ----hHHHHHHHHHHhcCCcchHHHHHhcCCCeEEEEEecCCccchHHHHHHHHHHHHhhccc
Confidence 334457888889999988 99999999999999999964 589999999999996654
No 29
>KOG2821 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin A [Transcription]
Probab=93.95 E-value=0.017 Score=70.09 Aligned_cols=57 Identities=32% Similarity=0.403 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcCCCCcHhhhhhcCCCcccccccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 000335 378 EEFLLILLRALDKLPVNLNALQMCNIGKSVNHLRTHKNVEIQKKARSLVDTWKKRVEAE 436 (1646)
Q Consensus 378 ee~lLeLLr~Lk~lPiTlelLk~T~IGktVnkLRKH~n~eI~kLAk~LVkkWKk~Vd~e 436 (1646)
...++..|..|-++|+++++|.+|.+|++|+.||||. .|..+|..|+..||+.|...
T Consensus 24 pkR~lk~I~~ls~lP~~~k~l~Et~~~k~l~~L~k~~--~~g~~~~Dl~~~WK~~v~~d 80 (433)
T KOG2821|consen 24 PKRLLKRIQKLSNLPHLFKHLLETGKGKTLNSLRKIS--HVGKLAFDLVALWKDLVLVD 80 (433)
T ss_pred HHHHHHHHHHhccchHHHHHHHHhhhhHHHHHHHHhh--cccccccchHHHHHHhcccc
Confidence 4688999999999999999999999999999999998 68999999999999998543
No 30
>PF11467 LEDGF: Lens epithelium-derived growth factor (LEDGF) ; InterPro: IPR021567 LEDGF is a chromatin-associated protein that protects cells from stress-induced apoptosis. It is the binding partner of HIV-1 integrase in human cells. The integrase binding domain (IBD) of LEDGF is a compact right-handed bundle composed of five alpha-helices. The residues essential for the interaction with the integrase are present in the inter-helical loop regions of the bundle structure. ; PDB: 3F9K_K 3HPG_G 3U88_C 3HPH_H 2B4J_D 1Z9E_A.
Probab=91.23 E-value=0.18 Score=51.64 Aligned_cols=59 Identities=27% Similarity=0.218 Sum_probs=47.5
Q ss_pred ChHHHHHHHHHHhcCCCCcHhhhhh-cCCCcccccccCC-CCHHHHHHHHHHHHHHHHHHH
Q 000335 376 SVEEFLLILLRALDKLPVNLNALQM-CNIGKSVNHLRTH-KNVEIQKKARSLVDTWKKRVE 434 (1646)
Q Consensus 376 s~ee~lLeLLr~Lk~lPiTlelLk~-T~IGktVnkLRKH-~n~eI~kLAk~LVkkWKk~Vd 434 (1646)
...+.+|++|..|..|+||-.+|+. +.+=-++.+||++ .|..|++.|..|+.+.|.++-
T Consensus 20 ~Dv~kcL~~LdeL~~l~vT~~mL~kn~e~V~TlkklRrY~gn~~Ir~KA~~lYnkfK~~f~ 80 (106)
T PF11467_consen 20 PDVKKCLKALDELKSLQVTSLMLQKNPECVETLKKLRRYKGNQQIRKKATELYNKFKSLFL 80 (106)
T ss_dssp E-HHHHHHHHHHHHTS---HHHHTTTHHHHHHHHHHTT-TT-HHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHhCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhC
Confidence 4578999999999999999998765 4588889999998 589999999999999999994
No 31
>COG5139 Uncharacterized conserved protein [Function unknown]
Probab=83.91 E-value=2.2 Score=50.16 Aligned_cols=79 Identities=23% Similarity=0.430 Sum_probs=56.6
Q ss_pred HHHhchhhHHHHHHHHhhcccCCCCCCCCCCCChHHHHHHHHHHhcCCCCcHhhhhhcCCCccccccc--CCCCHHHHHH
Q 000335 344 VQLRGLLVFDEWLQEVHKGKIGDAGSPRDGDKSVEEFLLILLRALDKLPVNLNALQMCNIGKSVNHLR--THKNVEIQKK 421 (1646)
Q Consensus 344 vq~~Gl~vL~eWLqE~~K~k~gd~~sp~~~dks~ee~lLeLLr~Lk~lPiTlelLk~T~IGktVnkLR--KH~n~eI~kL 421 (1646)
+--+=|..+.-||.-+- |++-| +-..--.||..|+.|||-.|+|++.+||+.|==.. |....+|+.+
T Consensus 206 LDnniLdsVr~WLEPLP-----D~SlP------~~~IqksL~dvL~~lpI~tEHL~eSgvGrIV~FYtiskk~e~~v~r~ 274 (397)
T COG5139 206 LDNNILDSVRGWLEPLP-----DKSLP------NIKIQKSLLDVLKTLPIHTEHLVESGVGRIVYFYTISKKEEKEVRRS 274 (397)
T ss_pred hhcchHHHHHhhhccCC-----CCCCc------chHHHHHHHHHHhhCCchHHHhhhcCCceEEEEEecCCcccHHHHHH
Confidence 33344445567883332 32333 23344457788889999999999999999997655 4567899999
Q ss_pred HHHHHHHHHHHH
Q 000335 422 ARSLVDTWKKRV 433 (1646)
Q Consensus 422 Ak~LVkkWKk~V 433 (1646)
|+.||..|-.-|
T Consensus 275 A~~LV~eWtrpI 286 (397)
T COG5139 275 AKALVQEWTRPI 286 (397)
T ss_pred HHHHHHHhhccc
Confidence 999999998765
No 32
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=75.49 E-value=0.41 Score=57.54 Aligned_cols=94 Identities=15% Similarity=0.072 Sum_probs=76.4
Q ss_pred EEEEECCEEEeeCCEEEEcCCC-CCCCeEEEEEEEeecCCCcEEEEEEEEeccccccC-CcccccCCCCCeeEecCCcCc
Q 000335 62 TFFSQDGRKISVGDCALFKPPQ-DSPPFIGIIRSLTAGKENKLTLSVNWLYRPAEVKL-GKGFLLEAAPNEIFYSFHKDE 139 (1646)
Q Consensus 62 eSf~vDGeeYrVGDcVLVkped-d~pPyIArI~sIwEd~dGe~~VrVqWFYRPeET~l-gkg~~~~aDpNELFLSdh~Dd 139 (1646)
..+.+.+....+|+++++.+.. ...|.++.+..+|.+.+...+.-++|||||.++.. -...+.. +++.+....+.
T Consensus 268 ~~~~i~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 344 (371)
T COG5076 268 ESVLITNSQAHVGAWPFLRPVSDEEVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFD---NCVMYNGEVTD 344 (371)
T ss_pred hhhcccccccccccccccccCCcccccchhhhhhcccccccchhhhhcccCCCccccccccchhhh---cccccchhhhh
Confidence 5667788899999999999864 57788999999999888878889999999997754 3333444 88899999999
Q ss_pred CCccccccccEEEecCCCc
Q 000335 140 IPAASLLHPCKVAFLPKGI 158 (1646)
Q Consensus 140 npLeSIlGKC~Vlsl~ey~ 158 (1646)
+.+..+.+.|.|.....+.
T Consensus 345 ~~~~~~~~~~~~~~~~~~~ 363 (371)
T COG5076 345 YYKNANVLEDFVIKKTRLI 363 (371)
T ss_pred hhhhccchhhhHhhhhhhh
Confidence 9999999999997655443
No 33
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=74.72 E-value=3.1 Score=55.53 Aligned_cols=127 Identities=15% Similarity=0.164 Sum_probs=84.0
Q ss_pred CCCceEEEEECCEEEeeCCEEEEcCCCCC--------------------C---CeEEEEEEEeecCC-CcEEEEEEEEec
Q 000335 57 SPNSVTFFSQDGRKISVGDCALFKPPQDS--------------------P---PFIGIIRSLTAGKE-NKLTLSVNWLYR 112 (1646)
Q Consensus 57 s~k~YeSf~vDGeeYrVGDcVLVkpedd~--------------------p---PyIArI~sIwEd~d-Ge~~VrVqWFYR 112 (1646)
--..|+++++++++|.+||-|+|.-+.+. . .--|+|-.|++..+ ..+.+.||.||-
T Consensus 439 ~g~iye~~~in~~~ys~g~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~kg~is~fy~~~~~~~~~~e~c~y~d 518 (1164)
T PTZ00112 439 DGVIYESIQINDVEYSIGDDVLIFCTGNGNTYNGKSGTKKNQNNKNIKENIYQLRKGKISSFYKNTNSNQVEAEVCIYYD 518 (1164)
T ss_pred CceEEEEEEEcceeeccCCcEEEEEcCCCCccccccCccccccccchhhhhheecccccchhhhcCCCceeeEEEEEEEc
Confidence 33469999999999999999987644211 1 22688999988643 458999999998
Q ss_pred ccccc----CC-----c------ccccCCCCCeeEecC--CcCcCCccccccccEEEecCC-Cc---cCCCCCCeEEEEE
Q 000335 113 PAEVK----LG-----K------GFLLEAAPNEIFYSF--HKDEIPAASLLHPCKVAFLPK-GI---ELPSGIGSFVCRK 171 (1646)
Q Consensus 113 PeET~----lg-----k------g~~~~aDpNELFLSd--h~DdnpLeSIlGKC~Vlsl~e-y~---dlP~g~dvFfCRr 171 (1646)
..|-. +. + -.|++.+..+.||-- |+-.+.+.-|..|..|..... |. .+..|.+-|+|-+
T Consensus 519 ~~d~~~i~~~~~~~~~rr~~~~f~~~~d~~~~~~~llgni~f~~~~~~~i~kki~~~ne~~~~~~d~~~~~g~~kflc~~ 598 (1164)
T PTZ00112 519 QHDAQYIKELEEKQKSRRCKADFEVFLDDDTKNFYLLGNIHFKILDAKMILKKIYVYNEKELYDEDKTAKQGKDKFLCTH 598 (1164)
T ss_pred cccHHHHHHHHHHHHhhhhhhhhhHhcccccceeEEecceeEEEechHhhhhhheeecchhhcccchhhhcccchhhhhH
Confidence 77642 11 1 113445567777765 345667778888888865543 22 2235689999987
Q ss_pred EEeCCCCEEEec
Q 000335 172 VYDITNKCLWWL 183 (1646)
Q Consensus 172 ~YD~~tKrF~~L 183 (1646)
..-....++..|
T Consensus 599 ~~k~~~~~~~~~ 610 (1164)
T PTZ00112 599 YLKEREERICFI 610 (1164)
T ss_pred hhhcchhheeec
Confidence 665555554443
No 34
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.09 E-value=4.2e+02 Score=36.49 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=14.1
Q ss_pred CCcCCCCcccccccccCCCCCCCCCC
Q 000335 1370 GGLLNGEVNVRRDFDLNDGPVLDDCS 1395 (1646)
Q Consensus 1370 ~~~ss~~~~~~RdFDLNdgP~~d~~~ 1395 (1646)
+++|+.--.++-|--+|--|.+....
T Consensus 21 ~g~~~~~a~~~~~~~~~p~p~~~~~~ 46 (1007)
T KOG1984|consen 21 GGSSNSLAQAMPNGSINPPPPMQGTG 46 (1007)
T ss_pred CCCCchhhhhccCCccCCCCCCCCCC
Confidence 44455544556666677545554444
No 35
>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2, HPR3, HPR4, respectively) and lens epithelium-derived growth factor, LEDGF. Members of the HDGF family have been linked to human diseases, and HDGF is a prognostic factor in several types of cancer. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=43.87 E-value=28 Score=34.36 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=34.5
Q ss_pred EEeeCCEEEEcCCCCCCCeEEEEEEEeecCCCcEEEEEEEEeccc
Q 000335 70 KISVGDCALFKPPQDSPPFIGIIRSLTAGKENKLTLSVNWLYRPA 114 (1646)
Q Consensus 70 eYrVGDcVLVkpedd~pPyIArI~sIwEd~dGe~~VrVqWFYRPe 114 (1646)
.|++||.|+-+-. .-++|-|+|++.-+.......+.|+||-..+
T Consensus 2 ~f~~GdlVwaK~k-Gyp~WPa~I~~~~~~~~~~~~~~V~FfGt~~ 45 (83)
T cd05834 2 QFKAGDLVFAKVK-GYPAWPARVDEPEDWKPPGKKYPVYFFGTHE 45 (83)
T ss_pred CCCCCCEEEEecC-CCCCCCEEEecccccCCCCCEEEEEEeCCCC
Confidence 4789999999963 5789999999987643345679999998543
No 36
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=41.44 E-value=31 Score=31.87 Aligned_cols=41 Identities=10% Similarity=0.127 Sum_probs=25.7
Q ss_pred EeeCCEEEEcCCCCCCCeEEEEEEEeecCCCcEEEEEEEEeccc
Q 000335 71 ISVGDCALFKPPQDSPPFIGIIRSLTAGKENKLTLSVNWLYRPA 114 (1646)
Q Consensus 71 YrVGDcVLVkpedd~pPyIArI~sIwEd~dGe~~VrVqWFYRPe 114 (1646)
|++||.|.++++.+ ..-|..|..- ......++.++||---.
T Consensus 1 f~~GDvV~LKSGGp-~MTV~~v~~~--~~~~~~~v~C~WFd~~~ 41 (53)
T PF09926_consen 1 FKIGDVVQLKSGGP-RMTVTEVGPN--AGASGGWVECQWFDGHG 41 (53)
T ss_pred CCCCCEEEEccCCC-CeEEEEcccc--ccCCCCeEEEEeCCCCC
Confidence 58999999998752 1224333322 12234789999997443
No 37
>KOG2133 consensus Transcriptional corepressor Atrophin-1/DRPLA [General function prediction only]
Probab=38.79 E-value=19 Score=48.21 Aligned_cols=116 Identities=13% Similarity=0.091 Sum_probs=80.5
Q ss_pred EECCEEEeeCCEEEEcCCCCCCCeEEEEEEEeecCC-CcEEEEEEEEeccccccC-C---ccc------cc------CCC
Q 000335 65 SQDGRKISVGDCALFKPPQDSPPFIGIIRSLTAGKE-NKLTLSVNWLYRPAEVKL-G---KGF------LL------EAA 127 (1646)
Q Consensus 65 ~vDGeeYrVGDcVLVkpedd~pPyIArI~sIwEd~d-Ge~~VrVqWFYRPeET~l-g---kg~------~~------~aD 127 (1646)
..++..|.++|-|+++.....++.|+.|..+...+. ..+.++.-.|.|.+||.. + .+. +. ...
T Consensus 140 s~~e~~y~~~~~l~~~v~~~~p~lia~~~~~~~~Kr~~~~~~k~s~~~r~~d~Pet~y~~~m~pe~Ar~e~~P~~~pq~~ 219 (1229)
T KOG2133|consen 140 SHDETLYDLRDSLFVEVSQPEPYLIAAICGFKYTKRDDRQVVKLSFYFRADDIPETGYLNLMKPERARLEINPHLCPQPL 219 (1229)
T ss_pred cccchhhhhhhhhhhhhccCCccccccccCccccccccccccccccccccccCcccccccccCchhhhhccCCccCCCcc
Confidence 457778999999999887664555888887765553 467778889999999872 1 111 00 124
Q ss_pred CCeeEecCCc-CcCCccccccccEEEecCCCc----c---CCCCCCeEEEEEEEeCCCCEE
Q 000335 128 PNEIFYSFHK-DEIPAASLLHPCKVAFLPKGI----E---LPSGIGSFVCRKVYDITNKCL 180 (1646)
Q Consensus 128 pNELFLSdh~-DdnpLeSIlGKC~Vlsl~ey~----d---lP~g~dvFfCRr~YD~~tKrF 180 (1646)
.+|||.+..- -.-+..|..|||.+.+..+.. . +..+.++||...+|.+..++.
T Consensus 220 sq~l~~s~l~~i~qppscp~gk~~~~~skd~~h~~~~n~p~~ld~~i~fk~agglpps~k~ 280 (1229)
T KOG2133|consen 220 SQELFNSELQGITQPPSCPRGKGIAEYSKDVRHGGNTNAPFSLDNDIFFKCAGGLPPSTKP 280 (1229)
T ss_pred hhhhhcccccCCCCCCcCCCCCceEEeecccccCCccCCCCcccceeeeecccCCCCCCCC
Confidence 6788888776 457899999999998443221 1 113467888889998877754
No 38
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=34.30 E-value=3.7e+02 Score=38.10 Aligned_cols=13 Identities=23% Similarity=0.107 Sum_probs=7.1
Q ss_pred ccccccccccccc
Q 000335 1111 VSTALRAQETGQL 1123 (1646)
Q Consensus 1111 ~~p~~~~~e~~~~ 1123 (1646)
-+|-++..|.+..
T Consensus 1175 ispwlLrlelDr~ 1187 (1605)
T KOG0260|consen 1175 ISPWLLRLELDRA 1187 (1605)
T ss_pred cChHHHHhhhhhh
Confidence 3466666665554
No 39
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase V. It is highly expressed in several types of human cancers. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=32.99 E-value=55 Score=32.54 Aligned_cols=39 Identities=21% Similarity=0.226 Sum_probs=31.3
Q ss_pred EeeCCEEEEcCCCCCCCeEEEEEEEeecCCCcEEEEEEEEecc
Q 000335 71 ISVGDCALFKPPQDSPPFIGIIRSLTAGKENKLTLSVNWLYRP 113 (1646)
Q Consensus 71 YrVGDcVLVkpedd~pPyIArI~sIwEd~dGe~~VrVqWFYRP 113 (1646)
|++||.|.-+-. .-++|.|+|.++... ..++.|.||=-.
T Consensus 1 f~~gdlVWaK~~-g~P~WPa~I~~~~~~---~~k~~V~FfG~~ 39 (80)
T cd06080 1 FEKNDLVWAKIQ-GYPWWPAVIKSISRK---KQKARVNFIGDN 39 (80)
T ss_pred CCCCCEEEEeCC-CCCCCCEEEeeecCC---CCEEEEEEeCCC
Confidence 578999999863 468899999998653 578999999766
No 40
>PF10383 Clr2: Transcription-silencing protein Clr2 ; InterPro: IPR018839 Clr2 (cryptic loci regulator) is a chromatin silencing protein, one of a quartet of proteins forming the core of SHREC, a multienzyme effector complex that mediates hetero-chromatic transcriptional gene silencing in fission yeast []. Clr2 does not have any obvious well-conserved domains but, along with the other core proteins, binds to the histone deacetylase Clr3, and on its own might also have a role in chromatin organisation at the cnt domain, the site of kinetochore assembly.
Probab=31.03 E-value=1.7e+02 Score=31.63 Aligned_cols=40 Identities=18% Similarity=0.092 Sum_probs=30.6
Q ss_pred CceEEEEECCEEEeeCCEEEEcCCC-----------CCCCeEEEEEEEeec
Q 000335 59 NSVTFFSQDGRKISVGDCALFKPPQ-----------DSPPFIGIIRSLTAG 98 (1646)
Q Consensus 59 k~YeSf~vDGeeYrVGDcVLVkped-----------d~pPyIArI~sIwEd 98 (1646)
.||..+.++-+.+.|||+|-|++.. ....-|-.|.+|...
T Consensus 1 i~y~GiflGAE~I~vGD~VRl~~~~~~~~~~~~~~~~~~tdvMvI~~I~~~ 51 (139)
T PF10383_consen 1 IYYRGIFLGAEMIWVGDAVRLKPLNASPSPNQSDGNPDVTDVMVIDEIQLR 51 (139)
T ss_pred CeECeEEEeeEEEEeCCEEEECccCCCcccccccCCCCceeEEEEeEEEEe
Confidence 3899999999999999999996532 123457788888654
No 41
>cd05835 Dnmt3b_related The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis. In tumorigenesis, DNA methylation by Dnmt3b is known to play a role in the inactivation of tumor suppressor genes. In addition, a point mutation in the PWWP domain of Dnmt3b has been identified in patients with ICF syndrome (immunodeficiency, centromeric instability, and facial anomalies), a rare autosomal recessive disorder characterized by hypomethylation of classical satellite DNA. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=30.07 E-value=54 Score=32.47 Aligned_cols=41 Identities=24% Similarity=0.190 Sum_probs=31.0
Q ss_pred EeeCCEEEEcCCCCCCCeEEEEEEEeecC---CCcEEEEEEEEec
Q 000335 71 ISVGDCALFKPPQDSPPFIGIIRSLTAGK---ENKLTLSVNWLYR 112 (1646)
Q Consensus 71 YrVGDcVLVkpedd~pPyIArI~sIwEd~---dGe~~VrVqWFYR 112 (1646)
|.+||.|..+-. .-+.|-|+|.+..... ....++.|+||-.
T Consensus 1 f~vGDlVWaK~k-g~pwWP~~V~~~~~~~~~~~~~~~~~V~fFGs 44 (87)
T cd05835 1 FNVGDLVWGKIK-GFPWWPGRVVSITVTSKRPPVVGMRWVTWFGS 44 (87)
T ss_pred CCCCCEEEEecC-CCCCCCeEEechhhcccccCCCCeEEEEEeCC
Confidence 578999999863 4678999999986542 1235799999973
No 42
>PF09871 DUF2098: Uncharacterized protein conserved in archaea (DUF2098); InterPro: IPR019209 This family of proteins have no known function.
Probab=29.59 E-value=78 Score=32.32 Aligned_cols=42 Identities=17% Similarity=0.396 Sum_probs=31.7
Q ss_pred EEeeCCEE-EEcCCCCCCCeEEEEEEEeecCCCcEEEEE---EEEecccccc
Q 000335 70 KISVGDCA-LFKPPQDSPPFIGIIRSLTAGKENKLTLSV---NWLYRPAEVK 117 (1646)
Q Consensus 70 eYrVGDcV-LVkpedd~pPyIArI~sIwEd~dGe~~VrV---qWFYRPeET~ 117 (1646)
.|.||++| |+..+. +|+|.+|-. .++..|+.+ .-|||+.-+.
T Consensus 2 ~I~vGs~VRY~~TGT-----~G~V~diK~-ed~~~wv~LD~t~L~Yr~~~Le 47 (91)
T PF09871_consen 2 PIKVGSYVRYINTGT-----VGKVVDIKE-EDGETWVLLDSTDLYYRPDYLE 47 (91)
T ss_pred cceeCCEEEECCCCe-----EEEEEEEEE-eCCCeEEEEccCCceeecceeE
Confidence 57899999 777643 999999954 466788887 5677777653
No 43
>COG4014 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.15 E-value=99 Score=31.66 Aligned_cols=40 Identities=15% Similarity=0.369 Sum_probs=30.3
Q ss_pred eeCCEE-EEcCCCCCCCeEEEEEEEeecCCCcEEEEEE---EEeccccc
Q 000335 72 SVGDCA-LFKPPQDSPPFIGIIRSLTAGKENKLTLSVN---WLYRPAEV 116 (1646)
Q Consensus 72 rVGDcV-LVkpedd~pPyIArI~sIwEd~dGe~~VrVq---WFYRPeET 116 (1646)
.|||.| |+..+. +++|.+|.++.+|..||.+- -+||+.=+
T Consensus 10 ~VG~avrYvnTgT-----vgrV~dIkkdEdG~~WV~LdstdLwYre~~l 53 (97)
T COG4014 10 KVGDAVRYVNTGT-----VGRVVDIKKDEDGDIWVVLDSTDLWYREHYL 53 (97)
T ss_pred hhcceEEEeecCc-----eeeEEEEEeecCCceEEEEecCCceecccce
Confidence 489988 777643 99999999999999998873 35565533
No 44
>cd05162 PWWP The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. The function of the PWWP domain is still not known precisely; however, based on the fact that other regions of PWWP-domain proteins are responsible for nuclear localization and DNA-binding, is likely that the PWWP domain acts as a site for protein-protein binding interactions, influencing chromatin remodeling and thereby regulating transcriptional processes. Some PWWP-domain proteins have been linked to cancer or other diseases; some are known to function as growth factors.
Probab=25.22 E-value=81 Score=30.67 Aligned_cols=40 Identities=13% Similarity=0.084 Sum_probs=30.2
Q ss_pred EeeCCEEEEcCCCCCCCeEEEEEEEeecC------CCcEEEEEEEEe
Q 000335 71 ISVGDCALFKPPQDSPPFIGIIRSLTAGK------ENKLTLSVNWLY 111 (1646)
Q Consensus 71 YrVGDcVLVkpedd~pPyIArI~sIwEd~------dGe~~VrVqWFY 111 (1646)
|++||.|..+-. .-+.|-|+|+...... .....+.|+||-
T Consensus 1 f~~GdlVwaK~~-g~pwWPa~V~~~~~~~~~~~~~~~~~~~~V~Ffg 46 (87)
T cd05162 1 FRPGDLVWAKMK-GYPWWPALVVDPPKDSKKAKKKAKEGKVLVLFFG 46 (87)
T ss_pred CCCCCEEEEeCC-CCCCCCEEEccccccchhhhccCCCCEEEEEEeC
Confidence 579999999975 4578899999987642 223578888886
No 45
>PHA02763 hypothetical protein; Provisional
Probab=24.93 E-value=60 Score=32.95 Aligned_cols=44 Identities=23% Similarity=0.422 Sum_probs=31.6
Q ss_pred cccccchhhhHHHHh-ccchhhHHHHHHHhchhhHHHHHHHHhhc
Q 000335 319 IDLVCRSLLAGVVAA-TDKFDCLNWFVQLRGLLVFDEWLQEVHKG 362 (1646)
Q Consensus 319 ~~L~~R~~l~~Vi~~-T~~qd~L~~Fvq~~Gl~vL~eWLqE~~K~ 362 (1646)
+.+-.|.-..-||+- -=..+||+++|+..|..-..+||.|+..-
T Consensus 36 l~v~dr~f~gKvIa~ap~t~~~LsKYv~~SGFe~VEeWl~eArrL 80 (102)
T PHA02763 36 LKVGDKRFPGKVIAKAPVTEYCLSKYVKFSGFENVEEWLNEARRL 80 (102)
T ss_pred EEecCccccceEEEecCchHHHHHHHhhhcchhhHHHHHHHHHHH
Confidence 344445444444442 22468999999999999999999988765
No 46
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=20.30 E-value=1.6e+02 Score=26.80 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=25.9
Q ss_pred EeeCCEEEEcCCCCCCCeEEEEEEEeecCCCcEEEEEEE
Q 000335 71 ISVGDCALFKPPQDSPPFIGIIRSLTAGKENKLTLSVNW 109 (1646)
Q Consensus 71 YrVGDcVLVkpedd~pPyIArI~sIwEd~dGe~~VrVqW 109 (1646)
+.||+.|++.- .....|-|+|.++... .+.....|.+
T Consensus 1 ~~vG~~v~~~~-~~~~~y~A~I~~~r~~-~~~~~YyVHY 37 (55)
T PF11717_consen 1 FEVGEKVLCKY-KDGQWYEAKILDIREK-NGEPEYYVHY 37 (55)
T ss_dssp --TTEEEEEEE-TTTEEEEEEEEEEEEC-TTCEEEEEEE
T ss_pred CCcCCEEEEEE-CCCcEEEEEEEEEEec-CCCEEEEEEc
Confidence 57899999986 3457899999999884 4445555554
No 47
>cd05840 SPBC215_ISWI_like The PWWP domain is a component of the S. pombe hypothetical protein SPBC215, as well as ISWI complex protein 4. The ISWI (imitation switch) proteins are ATPases responsible for chromatin remodeling in eukaryotes, and SPBC215 is proposed to also bind chromatin. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=20.06 E-value=89 Score=31.57 Aligned_cols=40 Identities=28% Similarity=0.291 Sum_probs=29.0
Q ss_pred EeeCCEEEEcCCCCCCCeEEEEEEEe---------ecCCCcEEEEEEEEe
Q 000335 71 ISVGDCALFKPPQDSPPFIGIIRSLT---------AGKENKLTLSVNWLY 111 (1646)
Q Consensus 71 YrVGDcVLVkpedd~pPyIArI~sIw---------Ed~dGe~~VrVqWFY 111 (1646)
|++||.|+.+=. .-++|-|+|+.-. ........+.|+||-
T Consensus 1 f~~GDlVwaK~~-GyPwWPA~V~~~~~~p~~~l~~~~~~~~~~~~V~FFg 49 (93)
T cd05840 1 FQPGDRVLAKVK-GFPAWPAIVVPEEMLPDSVLKGKKKKNKRTYPVMFFP 49 (93)
T ss_pred CCCCCEEEEeCC-CCCCCCEEECChHHCCHHHHhcccCCCCCeEEEEEeC
Confidence 578999999975 4789999998621 112334678888884
Done!