Query 000336
Match_columns 1646
No_of_seqs 303 out of 885
Neff 3.7
Searched_HMMs 29240
Date Tue Mar 26 18:08:23 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000336.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_112-116//hhsearch_pdb/000336hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3av4_A DNA (cytosine-5)-methyl 1.0 1 1 234.7 13.6 146 17-186 436-596 (1330)
2 3swr_A DNA (cytosine-5)-methyl 1.0 1 1 232.4 14.5 147 18-188 126-286 (1002)
3 1w4s_A Polybromo, polybromo 1 1.0 1 1 225.1 8.5 141 25-188 1-147 (174)
4 3swr_A DNA (cytosine-5)-methyl 1.0 1 1 189.0 15.1 130 57-186 321-504 (1002)
5 4ft4_B DNA (cytosine-5)-methyl 1.0 1 1 183.0 9.7 127 60-186 47-183 (784)
6 3av4_A DNA (cytosine-5)-methyl 1.0 1 1 181.2 12.0 128 59-186 635-815 (1330)
7 4dov_A ORC1, origin recognitio 1.0 1 1 174.0 15.8 126 59-186 22-163 (163)
8 2fl7_A Regulatory protein SIR3 1.0 1 1 119.5 8.1 127 66-192 48-199 (232)
9 1m4z_A Origin recognition comp 1.0 1 1 117.7 6.0 129 65-193 47-200 (238)
10 1wjt_A Transcription elongatio 1.0 1 1 114.2 1.8 61 378-438 30-91 (103)
No 1
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=1.00 E-value=1 Score=234.66 Aligned_cols=146 Identities=16% Similarity=0.291 Sum_probs=121.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEECCEEEECCCC-CCCCEEEEEEEE
Q ss_conf 0113755641138975200001113699999999987788897257999989799509989992899-999938999999
Q 000336 17 RKREGRRRHMWTVPPRDSAILASVADGGSASPSSSSSLSSSPNSVTFFSQDGRKISVGDCALFKPPQ-DSPPFIGIIRSL 95 (1646)
Q Consensus 17 ~kk~~k~k~~W~~~~~~~~Ig~s~~~~gk~~~~~~~~~~~s~k~YeSf~iDGeeyrVGDcVLIksed-dspPyIARI~eI 95 (1646)
++|+.+.++.| +|++++..+.. + ||+++.++|.+|+|||||||.+++ +.++|||+|++|
T Consensus 436 ~~~~~~~~i~W--------~G~p~k~~~~~---~---------~Y~~~~v~g~~~~vGD~V~v~~~d~~~p~yiarIe~i 495 (1330)
T 3av4_A 436 KKKQNKDRISW--------LGQPMKIEENR---T---------YYQKVSIDEEMLEVGDCVSVIPDDSSKPLYLARVTAL 495 (1330)
T ss_dssp BCCCCCSCEEE--------ESSCSCCC--C---E---------EECSEEEESSEEETTCEEEECBCCSSCCCEEEEEEEE
T ss_pred HHHCCCCCCEE--------CCCCEECCCCC---E---------EEEEEEECCEEEECCCEEEEECCCCCCCCEEEEEEEE
T ss_conf 21034677357--------06866346872---5---------6458999999996599899957999988788888362
Q ss_pred EECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCC---C---------C--
Q ss_conf 6227983899999984554456875555578999259629847678542135519982699856---8---------8--
Q 000336 96 TAGKENKLTLSVNWLYRPAEVKLGKGFLLEAAPNEIFYSFHKDEIPAASLLHPCKVAFLPKGIE---L---------P-- 161 (1646)
Q Consensus 96 wED~dGek~VrVqWFYRPeET~lgkk~~l~aDPNELFLSdh~DeIPLeSIiGKC~Vlslsey~e---l---------P-- 161 (1646)
|++.+|.+||+++|||||+||.+++. .+++|||+|+|||++++++|.|||+|++...+.+ . .
T Consensus 496 we~~dg~~~~~~~WfyRp~ETvlg~~----~~~rElFlS~~~d~~~l~~I~gKC~V~~~~~~~~~~~~~~~~~~~~~~~~ 571 (1330)
T 3av4_A 496 WEDKNGQMMFHAHWFCAGTDTVLGAT----SDPLELFLVGECENMQLSYIHSKVKVIYKAPSENWAMEGGTDPETTLPGA 571 (1330)
T ss_dssp EEETTCCEEEEEEEEEEGGGSTTGGG----SCTTEEEEEEEEEEEEGGGEEEEECEEECCCCTTSTTCCC----------
T ss_pred EECCCCCEEEEEEEEECHHHCCCCCC----CCCCEEEEECCCCCCCHHHHCCEEEEEEECCCHHHHHHCCCCCCCCCCCC
T ss_conf 11599977999999876677025534----58874787555056748882435599981561223441466731011222
Q ss_pred CCCCEEEEEEEEECCCCEEEECCCC
Q ss_conf 9888299999994799799725730
Q 000336 162 SGIGSFVCRKVYDITNKCLWWLTDQ 186 (1646)
Q Consensus 162 sg~dtFfCRr~YD~~tKkF~~Ltde 186 (1646)
...++|||++.||+..++|++|+.+
T Consensus 572 ~~~~~F~C~~~Yd~~~~~F~~lp~~ 596 (1330)
T 3av4_A 572 EDGKTYFFQLWYNQEYARFESPPKT 596 (1330)
T ss_dssp ---CCEEEEEEEETTTTEEECCCCC
T ss_pred CCCCCEEEEEEECCCCCCCCCCCCC
T ss_conf 5688369986987755735786767
No 2
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=1.00 E-value=1 Score=232.39 Aligned_cols=147 Identities=17% Similarity=0.283 Sum_probs=121.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEECCEEEECCCC-CCCCEEEEEEEEE
Q ss_conf 113755641138975200001113699999999987788897257999989799509989992899-9999389999996
Q 000336 18 KREGRRRHMWTVPPRDSAILASVADGGSASPSSSSSLSSSPNSVTFFSQDGRKISVGDCALFKPPQ-DSPPFIGIIRSLT 96 (1646)
Q Consensus 18 kk~~k~k~~W~~~~~~~~Ig~s~~~~gk~~~~~~~~~~~s~k~YeSf~iDGeeyrVGDcVLIksed-dspPyIARI~eIw 96 (1646)
|++.+..+.| +|++++..+.. .||+++.++|++|+|||||||.+++ +.+||||+|++||
T Consensus 126 k~~~~~~~~W--------~G~p~k~~~~~------------~~Y~s~~v~g~~i~VGD~V~v~~~d~~~ppyIarIe~m~ 185 (1002)
T 3swr_A 126 KKQNKNRISW--------VGEAVKTDGKK------------SYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALW 185 (1002)
T ss_dssp CCCCCSCEEE--------ESCCCCCBTTE------------EECSEEEETTEEEETTCEEEECBSSTTSCCEEEEEEEEE
T ss_pred CCCCCCCCCC--------CCCCCCCCCCC------------EEEEEEEECCEEEECCCEEEEECCCCCCCCEEEEEEEEE
T ss_conf 2244556543--------67633466674------------310389999989964998999668888886689998776
Q ss_pred ECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEECCC---------CC-CCC---CC
Q ss_conf 227983899999984554456875555578999259629847678542135519982699---------85-688---98
Q 000336 97 AGKENKLTLSVNWLYRPAEVKLGKGFLLEAAPNEIFYSFHKDEIPAASLLHPCKVAFLPK---------GI-ELP---SG 163 (1646)
Q Consensus 97 ED~dGek~VrVqWFYRPeET~lgkk~~l~aDPNELFLSdh~DeIPLeSIiGKC~Vlslse---------y~-elP---sg 163 (1646)
++.+|++||+|+|||||+||.+++. ++++|||+|++||++++++|.|||+|++... .. +.+ .+
T Consensus 186 ed~~g~k~~~v~Wf~rp~ET~lg~~----~~~~ElFlsd~cd~~~l~~I~gkc~V~~~~~~~~w~~~~~~~~~~~~~~~~ 261 (1002)
T 3swr_A 186 EDSSNGQMFHAHWFCAGTDTVLGAT----SDPLELFLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMDPESLLEGDD 261 (1002)
T ss_dssp EETTTEEEEEEEEEEEGGGSTTGGG----SCTTEEEEEEEEEEEEGGGEEEEECEEECCCCTTGGGCTTCCCCCSCCCCC
T ss_pred ECCCCCEEEEEEEEECCHHCCCCCC----CCCCCEEEECCCCCCCHHHHCEEEEEEECCCCCCHHHHCCCCCCCCCCCCC
T ss_conf 4489976999999866101014667----899846864654577588935065999756775434422666444455678
Q ss_pred CCEEEEEEEEECCCCEEEECCCCHH
Q ss_conf 8829999999479979972573000
Q 000336 164 IGSFVCRKVYDITNKCLWWLTDQDY 188 (1646)
Q Consensus 164 ~dtFfCRr~YD~~tKkF~~LtdedY 188 (1646)
.++|||++.||+.+++|..|+.+..
T Consensus 262 ~~~ffc~~~Y~~~~~~F~~lp~~~~ 286 (1002)
T 3swr_A 262 GKTYFYQLWYDQDYARFESPPKTQP 286 (1002)
T ss_dssp CTSEEEEEEEETTTTEEECCCCCCC
T ss_pred CCEEEEEEEECCCCCCCCCCCHHHC
T ss_conf 9869999898888772248870121
No 3
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=1.00 E-value=1 Score=225.09 Aligned_cols=141 Identities=22% Similarity=0.284 Sum_probs=119.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEECCEEEECCCC-CCCCEEEEEEEEEECCCCCE
Q ss_conf 41138975200001113699999999987788897257999989799509989992899-99993899999962279838
Q 000336 25 HMWTVPPRDSAILASVADGGSASPSSSSSLSSSPNSVTFFSQDGRKISVGDCALFKPPQ-DSPPFIGIIRSLTAGKENKL 103 (1646)
Q Consensus 25 ~~W~~~~~~~~Ig~s~~~~gk~~~~~~~~~~~s~k~YeSf~iDGeeyrVGDcVLIksed-dspPyIARI~eIwED~dGek 103 (1646)
|||. |++.+.+.++ + ||++|.++|++|+|||||||++++ ..+||||+|++||++.+|++
T Consensus 1 ~~~~--------g~~~~~~~~r----~--------~y~~~~~~g~~~~vGD~V~v~~~~~~~~p~I~rI~~i~~~~~g~~ 60 (174)
T 1w4s_A 1 HMSS--------GSAGLSSLHR----T--------YSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEK 60 (174)
T ss_dssp ---------------------------------------------CCCTTCEEEECCSSTTSCCEEEEEEEEEECTTCCE
T ss_pred CCCC--------CCCCCCCCCC----E--------EEEEEEECCEEEECCCEEEEECCCCCCCCEEEEEEEEEECCCCCE
T ss_conf 9766--------8861048975----8--------968899999999799999996899899999999979997689988
Q ss_pred EEEEEEEECCCCCCCCC-CCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCC-C---CCCCEEEEEEEEECCCC
Q ss_conf 99999984554456875-5555789992596298476785421355199826998568-8---98882999999947997
Q 000336 104 TLSVNWLYRPAEVKLGK-GFLLEAAPNEIFYSFHKDEIPAASLLHPCKVAFLPKGIEL-P---SGIGSFVCRKVYDITNK 178 (1646)
Q Consensus 104 ~VrVqWFYRPeET~lgk-k~~l~aDPNELFLSdh~DeIPLeSIiGKC~Vlslsey~el-P---sg~dtFfCRr~YD~~tK 178 (1646)
+++|+|||||+||.... +.+ .+||||+|+|+|++++++|+|||.|+++.+|.+. | ...++|||++.||..++
T Consensus 61 ~v~v~WfyRPeet~~~~~~~~---~~~EvF~S~~~d~~~~~~I~gkC~V~~~~~~~~~~p~~~~~~dvF~c~~~Yd~~~~ 137 (174)
T 1w4s_A 61 WLYGCWFYRPNETFHLATRKF---LEKEVFKSDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVYVCESRYSAKTK 137 (174)
T ss_dssp EEEEEEEECGGGSCCCTTCEE---ETTEEEEEEEEEEEEGGGEEEEEEEEEHHHHTTEEETTCCGGGEEEEEEEEETTTT
T ss_pred EEEEEEECCHHHCCCCCCCCC---CCCEEEEECCCCEECHHHEEEEEEEEECCHHHHCCCCCCCCCCEEEEEEEECCCCC
T ss_conf 999998249899056657767---89863970876406489910167999874452138677788998999689953028
Q ss_pred EEEECCCCHH
Q ss_conf 9972573000
Q 000336 179 CLWWLTDQDY 188 (1646)
Q Consensus 179 kF~~LtdedY 188 (1646)
+|.++....+
T Consensus 138 ~f~~i~~w~~ 147 (174)
T 1w4s_A 138 SFKKIKLWTM 147 (174)
T ss_dssp EEEECSSCCC
T ss_pred EECCCCCCCC
T ss_conf 3816755788
No 4
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=1.00 E-value=1 Score=188.99 Aligned_cols=130 Identities=20% Similarity=0.250 Sum_probs=109.2
Q ss_pred CCCCEEEEEECCEEEEECCEEEECCCC------------------------------------------CCCCEEEEEEE
Q ss_conf 897257999989799509989992899------------------------------------------99993899999
Q 000336 57 SPNSVTFFSQDGRKISVGDCALFKPPQ------------------------------------------DSPPFIGIIRS 94 (1646)
Q Consensus 57 s~k~YeSf~iDGeeyrVGDcVLIksed------------------------------------------dspPyIARI~e 94 (1646)
+..+|++|.++|.+|+|||||||.++. ..|++||+|.+
T Consensus 321 ~~~~~~~~~~~g~~y~vgD~Vyl~p~~~~f~~~~~~~~~~~~~~~vd~~~ype~yrk~~~~~kg~n~~~~~P~~IgrI~~ 400 (1002)
T 3swr_A 321 SRVLYYSATKNGILYRVGDGVYLPPEAFTFNIKLSSPVKRPRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKE 400 (1002)
T ss_dssp SCEEESEEEETTEEEETTCEEEECTTSCCCSSCCCCCCCCSCSCCCCTTTCTTSGGGHHHHHTCCCCCCCCCCEEEEEEE
T ss_pred CCEEEEEEEECCEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHCCCCCCCCCCCCEEEEEEE
T ss_conf 83788899999989951888997774343344544321222333333211313420210001454567888755567868
Q ss_pred EEECCCCC-------EEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCCC-----C
Q ss_conf 96227983-------89999998455445687555557899925962984767854213551998269985688-----9
Q 000336 95 LTAGKENK-------LTLSVNWLYRPAEVKLGKGFLLEAAPNEIFYSFHKDEIPAASLLHPCKVAFLPKGIELP-----S 162 (1646)
Q Consensus 95 IwED~dGe-------k~VrVqWFYRPeET~lgkk~~l~aDPNELFLSdh~DeIPLeSIiGKC~Vlslsey~elP-----s 162 (1646)
||....+. ++++|+|||||+||+.+....+.+|.||||||+|.+++++++|.|||.|++..++.... .
T Consensus 401 i~~~~~~~~~~~~~~~~v~v~~fyRPed~~~~~~~~~~~D~~elf~S~~~~~~~~~~i~GkC~V~~~~d~~~~~~~~~~~ 480 (1002)
T 3swr_A 401 IFCPKKSNGRPNETDIKIRVNKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMG 480 (1002)
T ss_dssp EEECCCSSSSCCSSCCEEEEEECBCGGGSTTCGGGGSSSCTTEEEECCCEEEEEGGGCCEEEEEEEGGGCSSCHHHHHHT
T ss_pred EEECCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCEECCCHHHCCEEEEEEEECCCCCCCHHHCCC
T ss_conf 97057766667776179999987780011565432325775258975452013879903578998704455565022057
Q ss_pred CCCEEEEEEEEECCCCEEEECCCC
Q ss_conf 888299999994799799725730
Q 000336 163 GIGSFVCRKVYDITNKCLWWLTDQ 186 (1646)
Q Consensus 163 g~dtFfCRr~YD~~tKkF~~Ltde 186 (1646)
+.+.|||+..||+.++.|..++..
T Consensus 481 ~p~~fyf~~~Yd~~~~~f~~~p~~ 504 (1002)
T 3swr_A 481 GPNRFYFLEAYNAKSKSFEDPPNH 504 (1002)
T ss_dssp SSSEEEEEEEEETTTTEEECCCST
T ss_pred CCCEEEEEEEEECCCCEEECCCCC
T ss_conf 998599977870788856217532
No 5
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=1.00 E-value=1 Score=182.99 Aligned_cols=127 Identities=13% Similarity=0.233 Sum_probs=108.5
Q ss_pred CEEEEEECCEEEEECCEEEECCCCCCCCEEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCC-----CCCCCCCCEEEEC
Q ss_conf 25799998979950998999289999993899999962279838999999845544568755-----5557899925962
Q 000336 60 SVTFFSQDGRKISVGDCALFKPPQDSPPFIGIIRSLTAGKENKLTLSVNWLYRPAEVKLGKG-----FLLEAAPNEIFYS 134 (1646)
Q Consensus 60 ~YeSf~iDGeeyrVGDcVLIkseddspPyIARI~eIwED~dGek~VrVqWFYRPeET~lgkk-----~~l~aDPNELFLS 134 (1646)
||.++.++|+.|.|||||||+.+...+.|||+|.+||+..+|..+|+|+||||++||+.... .-+..|+||||||
T Consensus 47 ~~~~~~~~~~~~~~~d~~~v~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~r~~d~~~~~~~~~~~~~~~~d~~~~~~s 126 (784)
T 4ft4_B 47 HYRSAKVDNVVYCLGDDVYVKAGENEADYIGRITEFFEGTDQCHYFTCRWFFRAEDTVINSLVSISVDGHKHDPRRVFLS 126 (784)
T ss_dssp ECSEEEETTEEEETTCEEEECCSTTSCCEEEEEEEEEEETTSCEEEEEEEEEEGGGSTTGGGGGCCBTTBCCCTTBEEEE
T ss_pred EEEEEEECCEEEECCCEEEEECCCCCCCEEEEEEEEEECCCCCEEEEEEEEECHHHHCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 33123688989967986899688999987789989887699888999998507355036312566520103666368974
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCCC-----CCCEEEEEEEEECCCCEEEECCCC
Q ss_conf 9847678542135519982699856889-----888299999994799799725730
Q 000336 135 FHKDEIPAASLLHPCKVAFLPKGIELPS-----GIGSFVCRKVYDITNKCLWWLTDQ 186 (1646)
Q Consensus 135 dh~DeIPLeSIiGKC~Vlslsey~elPs-----g~dtFfCRr~YD~~tKkF~~Ltde 186 (1646)
+++++|++++|.+||+|++.....+.+. ....|||++.|.....+|..+..+
T Consensus 127 ~~~~~~~~~~i~~k~~v~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 183 (784)
T 4ft4_B 127 EEKNDNVLDCIISKVKIVHVDPNMDPKAKAQLIESCDLYYDMSYSVAYSTFANISSE 183 (784)
T ss_dssp EEEEEEEGGGEEEECCEEECCTTSCHHHHHHHHHHCSEEESEEEETGGGEEEEC---
T ss_pred CCEEEECHHHEEEEEEEEEECCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCC
T ss_conf 747985658946668998648433510255406876268620007612375677744
No 6
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=1.00 E-value=1 Score=181.22 Aligned_cols=128 Identities=18% Similarity=0.279 Sum_probs=106.0
Q ss_pred CCEEEEEECCEEEEECCEEEECCCC------------------------------------------CCCCEEEEEEEEE
Q ss_conf 7257999989799509989992899------------------------------------------9999389999996
Q 000336 59 NSVTFFSQDGRKISVGDCALFKPPQ------------------------------------------DSPPFIGIIRSLT 96 (1646)
Q Consensus 59 k~YeSf~iDGeeyrVGDcVLIksed------------------------------------------dspPyIARI~eIw 96 (1646)
.||++|.++|++|+|||||||.++. ..|++||+|.+||
T Consensus 635 ~~Y~~~~~~g~~Y~vgD~Vyl~p~~f~~~~~~~~~~~~~~~~~~~~~~ype~yrk~~~~~kg~~~~~~~Py~IgqI~eI~ 714 (1330)
T 3av4_A 635 VYCSSITKNGVVYRLGDSVYLPPEAFTFNIKVASPVKRPKKDPVNETLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIH 714 (1330)
T ss_dssp EEEEEEEETTEEEETTCEEEECTTSCCCCCCC-------CCCCCCTTTCSSGGGGGC-------CCCCCCCEEEEEEECC
T ss_pred EEEEEEEECCEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEEEEEE
T ss_conf 56667998998995288899776113433233443233332334432230222011000256556788872578999997
Q ss_pred ECCC------CCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCC--C---CCCC
Q ss_conf 2279------838999999845544568755555789992596298476785421355199826998568--8---9888
Q 000336 97 AGKE------NKLTLSVNWLYRPAEVKLGKGFLLEAAPNEIFYSFHKDEIPAASLLHPCKVAFLPKGIEL--P---SGIG 165 (1646)
Q Consensus 97 ED~d------Gek~VrVqWFYRPeET~lgkk~~l~aDPNELFLSdh~DeIPLeSIiGKC~Vlslsey~el--P---sg~d 165 (1646)
...+ +..+++|+|||||+||.......+.+++||||||++.+++++++|.|||.|+++.++... + .+.+
T Consensus 715 ~~~~s~~~~~~~~~vrV~wFyRPedt~~~~~~~~~~D~nELf~S~~~~~vp~~~I~GKC~V~~~~d~~~~i~~y~~~g~d 794 (1330)
T 3av4_A 715 CGKKKGKVNEADIKLRLYKFYRPENTHRSYNGSYHTDINMLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQDYSQGGPD 794 (1330)
T ss_dssp CCEETTEECSSCCEEEEEEEECTTTSTTGGGTTTTSCTTBCEEEEEEEEEEGGGCCEEEEEEESTTCSSCHHHHHHTSTT
T ss_pred ECCCCCCCCCCCEEEEEEEEECHHHCCCCCCCCCCCCCCEEEEECCCEECCHHHCCCEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 05776656788438999986474442454322445675468843441323777848558998536666555432237897
Q ss_pred EEEEEEEEECCCCEEEECCCC
Q ss_conf 299999994799799725730
Q 000336 166 SFVCRKVYDITNKCLWWLTDQ 186 (1646)
Q Consensus 166 tFfCRr~YD~~tKkF~~Ltde 186 (1646)
.|||++.||..+++|..++..
T Consensus 795 ~Fy~~~~Yd~~~k~~~~~P~~ 815 (1330)
T 3av4_A 795 RFYFLEAYNSKTKNFEDPPNH 815 (1330)
T ss_dssp EEEESCEEETTTTEEECCCGG
T ss_pred EEEEEEEECCCCCEECCCCHH
T ss_conf 179988862667811369567
No 7
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=1.00 E-value=1 Score=173.96 Aligned_cols=126 Identities=20% Similarity=0.309 Sum_probs=109.9
Q ss_pred CCEEEEEE--CC---EEEEECCEEEECCCCCCCCEEEEEEEEEEC---CCCCEEEEEEEEECCCCCCCCCCCCCC--CCC
Q ss_conf 72579999--89---799509989992899999938999999622---798389999998455445687555557--899
Q 000336 59 NSVTFFSQ--DG---RKISVGDCALFKPPQDSPPFIGIIRSLTAG---KENKLTLSVNWLYRPAEVKLGKGFLLE--AAP 128 (1646)
Q Consensus 59 k~YeSf~i--DG---eeyrVGDcVLIkseddspPyIARI~eIwED---~dGek~VrVqWFYRPeET~lgkk~~l~--aDP 128 (1646)
.+|+++.+ .| ..++|||||||.+++...||||+|+.|+++ ....+.++|||||||+|++.+++.++. .+.
T Consensus 22 ~~Y~~~~v~~~~~~~~~i~vGd~VLI~~~D~~~PyVAki~~lye~~~e~~~~k~A~VQWy~R~~EiP~~k~~l~g~~~~~ 101 (163)
T 4dov_A 22 QMYREICMKINDGSEIHIKVGQFVLIQGEDNKKPYVAKLIELFQNGAEVPPKKCARVQWFVRFLEIPVSKRHLLGRSPPA 101 (163)
T ss_dssp EEESEEEEECTTSCEEEEETTCEEEECCSSSSCCEEEEEEEEEEETTSSSCEEEEEEEEEEEGGGSCTTTGGGGCSCCCT
T ss_pred EEEEEEEEECCCCCCEEEEECCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEEECHHHCCCCCHHHCCCCCCC
T ss_conf 63547998638987769961899997488656972688999875234578843899981224245365422320688887
Q ss_pred CEEEECCCCC---CCCCCCCCCCCEEEECCCCCCCCCC---CCEEEEEEEEECCCCEEEECCCC
Q ss_conf 9259629847---6785421355199826998568898---88299999994799799725730
Q 000336 129 NEIFYSFHKD---EIPAASLLHPCKVAFLPKGIELPSG---IGSFVCRKVYDITNKCLWWLTDQ 186 (1646)
Q Consensus 129 NELFLSdh~D---eIPLeSIiGKC~Vlslsey~elPsg---~dtFfCRr~YD~~tKkF~~Ltde 186 (1646)
+|||+++|.+ ++.+++|+|||.|+.+..+..+|.+ .++||.|+.|| +++|..|+++
T Consensus 102 qEIF~~d~~~~d~~I~aeTIi~~c~V~~~~~~e~~p~~~~~e~t~FvklsWd--~k~f~pl~~~ 163 (163)
T 4dov_A 102 QEIFWYDCSDWDNKINVETIIGPVQVVALAPEEVIPVDQKSEETLFVKLSWN--KKDFAPLPPE 163 (163)
T ss_dssp TEEEEECCSCSCCEEEGGGEEEEEEEEECCTTCCCCSSCCCCSEEEEEEEEC--SSCEEECC--
T ss_pred CEEEEECCCCCCCCCCHHHEEECEEEEECCCCCCCCCCCCCCEEEEEEEEEC--CCCCEECCCC
T ss_conf 7599844888766525778350239999277661377766540799997856--8741418999
No 8
>2fl7_A Regulatory protein SIR3; ORC, silencing, chromatin, transcription; 1.85A {Saccharomyces cerevisiae} PDB: 2fvu_A 3tu4_K*
Probab=1.00 E-value=1 Score=119.46 Aligned_cols=127 Identities=14% Similarity=0.081 Sum_probs=99.5
Q ss_pred ECCEEEEECCEEEECCCCCCCCEEEEEEEEEECC-CCCEEEEEEEEECCCCCCC--------CC-------CCC------
Q ss_conf 9897995099899928999999389999996227-9838999999845544568--------75-------555------
Q 000336 66 QDGRKISVGDCALFKPPQDSPPFIGIIRSLTAGK-ENKLTLSVNWLYRPAEVKL--------GK-------GFL------ 123 (1646)
Q Consensus 66 iDGeeyrVGDcVLIkseddspPyIARI~eIwED~-dGek~VrVqWFYRPeET~l--------gk-------k~~------ 123 (1646)
.||.+|++||+|+++.+....+.+++|..|--.. +..+.+.|+||+|..|+.. ++ ..+
T Consensus 48 ~Dg~~~~~GDsVlv~~~~~~sysv~LI~eIrl~t~~n~vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~~~~~~~~~ 127 (232)
T 2fl7_A 48 SDGLSFGKGESVIFNDNVTETYSVYLIHEIRLNTLNNVVEIWVFSYLRWFELKPKLYYEQFRPDLIKEDHPLEFYKDKFF 127 (232)
T ss_dssp TTCCEECTTCEEEEEETTTTEEEEEEEEEEEC-----CCEEEEEEEECGGGSCHHHHHHHHCHHHHHTTCCHHHHHHHHH
T ss_pred CCCCEEECCCEEEEECCCCCCEEEEEEEEEEECCCCCEEEEEEEEEECHHHCCCHHHHHHCCCHHCCCCCCHHHHHHHHH
T ss_conf 68819957988999369887417999999983688851799999851388757411110039211044552345544442
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCCC---CCCCEEEEEEEEECCCCEEEECCCCHHHHHH
Q ss_conf 57899925962984767854213551998269985688---9888299999994799799725730001346
Q 000336 124 LEAAPNEIFYSFHKDEIPAASLLHPCKVAFLPKGIELP---SGIGSFVCRKVYDITNKCLWWLTDQDYINER 192 (1646)
Q Consensus 124 l~aDPNELFLSdh~DeIPLeSIiGKC~Vlslsey~elP---sg~dtFfCRr~YD~~tKkF~~LtdedY~~e~ 192 (1646)
.....||||+|.+.+++.+.+|+++|+|+...+|.++. ....+||||+.||+....|..|...++....
T Consensus 128 ~~~~~nELflTa~l~eI~l~diI~~anVls~~Ef~~l~~d~~~~~tFf~R~~cd~~~~~f~~iD~~~~~~~i 199 (232)
T 2fl7_A 128 NEVNKSELYLTAELSEIWLKDFIAVGQILPESQWNDSSIDKIEDRDFLVRYACEPTAEKFVPIDIFQIIRRV 199 (232)
T ss_dssp HHSCTTEEEEEEEEEEECGGGEEEECEEECTTTC-------CTTTEEEEEEECCTTSCSCEECCHHHHHHHH
T ss_pred CCCCCCEEEEECCHHHHHHHHHHHHEEECCHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHH
T ss_conf 135555478816478977875532047645999777502656784089998874776826613199999998
No 9
>1m4z_A Origin recognition complex subunit 1; DNA replication, transcriptional silencing, chromatin, BAH D gene regulation; 2.20A {Saccharomyces cerevisiae} SCOP: b.34.12.1 PDB: 1zhi_A 1zbx_A
Probab=1.00 E-value=1 Score=117.66 Aligned_cols=129 Identities=19% Similarity=0.104 Sum_probs=100.1
Q ss_pred EECCEEEEECCEEEECCCCCCCCEEEEEEEEEEC-CCCCEEEEEEEEECCCCCCC--------CC-------CCC-----
Q ss_conf 9989799509989992899999938999999622-79838999999845544568--------75-------555-----
Q 000336 65 SQDGRKISVGDCALFKPPQDSPPFIGIIRSLTAG-KENKLTLSVNWLYRPAEVKL--------GK-------GFL----- 123 (1646)
Q Consensus 65 ~iDGeeyrVGDcVLIkseddspPyIARI~eIwED-~dGek~VrVqWFYRPeET~l--------gk-------k~~----- 123 (1646)
..||.+|++||+|+++.+....+.+++|..|--. .+..+.+.|+||+|..|+.. ++ ..+
T Consensus 47 ~~Dg~~~~~GDsVlv~~~~~~sysv~LI~eIrl~t~~n~vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~~~~~~~~ 126 (238)
T 1m4z_A 47 SSDGIKLGRGDSVVMHNEAAGTYSVYMIQELRLNTLNNVVELWALTYLRWFEVNPLAHYRQFNPDANILNRPLNYYNKLF 126 (238)
T ss_dssp TTTCCEECTTCEEEEEETTTTEEEEEEEEEEEEETTTTEEEEEEEEEECGGGSCHHHHHHHHCHHHHHSCCCHHHHHHHH
T ss_pred CCCCCEEECCCEEEEECCCCCCEEEEEEEEEEECCCCCEEEEEEEEEECHHHCCCHHHHHHCCCHHCCCCCCHHHHHHHH
T ss_conf 46881995798899926988741799999998368885179999985138874740111003921104455234544433
Q ss_pred -CCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCCC---CCCCEEEEEEEEECCCCEEEECCCCHHHHHHH
Q ss_conf -57899925962984767854213551998269985688---98882999999947997997257300013466
Q 000336 124 -LEAAPNEIFYSFHKDEIPAASLLHPCKVAFLPKGIELP---SGIGSFVCRKVYDITNKCLWWLTDQDYINERQ 193 (1646)
Q Consensus 124 -l~aDPNELFLSdh~DeIPLeSIiGKC~Vlslsey~elP---sg~dtFfCRr~YD~~tKkF~~LtdedY~~e~q 193 (1646)
.....||||+|.+.+++.+.+|+++|+|+...+|.++. ....+||||+.||+....|..|...++.....
T Consensus 127 ~~~~~~nELflTa~l~eI~l~diI~~anVls~~Ef~~i~~d~~~~~tFf~R~~cd~~~~~f~~iD~~~~~~~i~ 200 (238)
T 1m4z_A 127 SETANKNELYLTAELAELQLFNFIRVANVMDGSKWEVLKGNVDPERDFTVRYICEPTGEKFVDINIEDVKAYIK 200 (238)
T ss_dssp HHHSCTTEEEEEEEEEEECGGGEEEEEEEECHHHHHHHGGGCCTTTEEEEEEECCTTSCCCEECCHHHHHHHHT
T ss_pred HCCCCCCEEEEECCHHHHHHHHHHHHEEECCHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHH
T ss_conf 21355554787164788768755320476449997553125456842899988747767156130999999987
No 10
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=1.00 E-value=1 Score=114.17 Aligned_cols=61 Identities=30% Similarity=0.485 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 899999999832898848655205887411344588-8789999999999999998998750
Q 000336 378 EEFLLILLRALDKLPVNLNALQMCNIGKSVNHLRTH-KNVEIQKKARSLVDTWKKRVEAEMD 438 (1646)
Q Consensus 378 ee~lLeLLraLk~LPITleiLk~T~IGktVnkLRKH-~n~eI~klAk~LVkkWKk~V~~e~~ 438 (1646)
.+.++++|++|+.++||+++|++|+||++||+|||| .+++|+.+|+.||++||++|+.+.+
T Consensus 30 ~~~~l~~L~~L~~~~iT~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv~~WK~~v~~~~~ 91 (103)
T 1wjt_A 30 TEGALDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKRLLDSPRT 91 (103)
T ss_dssp CSSHHHHHHHHHTSCCCHHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHTCCSCC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999998578998999987656499999884699589999999999999999887412
Done!