Query 000337
Match_columns 1643
No_of_seqs 310 out of 884
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 04:53:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000337.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000337hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1886 BAH domain proteins [T 100.0 1.3E-39 2.9E-44 378.5 13.8 440 20-476 7-462 (464)
2 cd04713 BAH_plant_3 BAH, or Br 100.0 6.5E-30 1.4E-34 263.6 15.7 133 59-191 9-144 (146)
3 cd04716 BAH_plantDCM_I BAH, or 99.9 1.2E-24 2.5E-29 219.4 12.7 116 68-185 1-122 (122)
4 cd04717 BAH_polybromo BAH, or 99.9 1.6E-23 3.5E-28 208.8 11.7 114 68-183 1-119 (121)
5 cd04714 BAH_BAHCC1 BAH, or Bro 99.9 1.7E-23 3.7E-28 209.9 10.4 109 68-178 1-117 (121)
6 cd04370 BAH BAH, or Bromo Adja 99.9 3.8E-23 8.3E-28 200.5 12.1 114 68-183 1-122 (123)
7 PF01426 BAH: BAH domain; Int 99.9 3.8E-23 8.3E-28 201.4 9.6 112 69-184 1-119 (119)
8 smart00439 BAH Bromo adjacent 99.9 8.5E-23 1.8E-27 198.8 11.9 113 70-184 1-120 (120)
9 cd04760 BAH_Dnmt1_I BAH, or Br 99.9 2.2E-22 4.8E-27 203.2 10.8 109 68-180 1-123 (124)
10 cd04715 BAH_Orc1p_like BAH, or 99.9 4.7E-22 1E-26 208.4 13.1 121 59-180 18-151 (159)
11 cd04709 BAH_MTA BAH, or Bromo 99.9 5.3E-22 1.2E-26 208.9 11.9 120 69-190 2-144 (164)
12 cd04710 BAH_fungalPHD BAH, or 99.9 7.5E-22 1.6E-26 202.1 11.3 115 63-181 4-134 (135)
13 cd04721 BAH_plant_1 BAH, or Br 99.9 8.8E-22 1.9E-26 200.3 9.9 113 64-178 1-119 (130)
14 cd04712 BAH_DCM_I BAH, or Brom 99.9 4.5E-21 9.7E-26 195.2 13.3 114 67-185 2-130 (130)
15 cd04708 BAH_plantDCM_II BAH, o 99.8 5.9E-21 1.3E-25 206.0 12.0 120 64-185 1-147 (202)
16 cd04720 BAH_Orc1p_Yeast BAH, o 99.8 3.1E-20 6.8E-25 197.9 11.2 121 63-183 44-177 (179)
17 cd04718 BAH_plant_2 BAH, or Br 99.8 1.4E-19 3E-24 187.2 1.6 96 85-183 51-147 (148)
18 cd04719 BAH_Orc1p_animal BAH, 99.7 5.5E-18 1.2E-22 172.6 9.5 111 69-179 2-124 (128)
19 cd04711 BAH_Dnmt1_II BAH, or B 99.7 7.7E-17 1.7E-21 164.8 7.0 101 84-184 24-136 (137)
20 smart00509 TFS2N Domain in the 99.4 2.7E-13 5.9E-18 127.0 4.4 58 374-431 17-74 (75)
21 cd00183 TFIIS_I N-terminal dom 99.3 1.7E-12 3.7E-17 121.7 5.7 58 374-431 19-76 (76)
22 KOG1827 Chromatin remodeling c 99.2 4.9E-12 1.1E-16 154.2 6.1 119 60-181 179-304 (629)
23 TIGR01385 TFSII transcription 99.2 4.7E-11 1E-15 136.8 9.0 64 374-437 19-82 (299)
24 PF08711 Med26: TFIIS helical 99.1 2.9E-11 6.3E-16 105.8 2.5 52 380-431 1-53 (53)
25 KOG1105 Transcription elongati 98.8 1.1E-08 2.3E-13 116.9 6.8 60 374-433 21-81 (296)
26 KOG3554 Histone deacetylase co 98.7 1.9E-09 4.1E-14 126.1 -1.3 127 70-198 5-182 (693)
27 PLN02976 amine oxidase 97.1 0.0037 8E-08 84.3 13.3 105 318-435 1256-1361(1713)
28 KOG1793 Uncharacterized conser 96.0 0.014 3E-07 69.9 7.3 122 298-430 159-290 (417)
29 KOG2821 RNA polymerase II tran 94.6 0.01 2.3E-07 71.8 0.3 58 375-434 24-81 (433)
30 PF11467 LEDGF: Lens epitheliu 92.3 0.11 2.5E-06 53.0 3.3 59 373-431 20-80 (106)
31 COG5139 Uncharacterized conser 86.8 0.69 1.5E-05 54.2 4.2 52 379-430 233-286 (397)
32 PTZ00112 origin recognition co 70.9 3.5 7.6E-05 55.1 3.6 121 60-180 442-607 (1164)
33 COG5076 Transcription factor i 67.4 0.79 1.7E-05 55.1 -2.9 92 62-156 268-361 (371)
34 KOG1984 Vesicle coat complex C 53.0 4.5E+02 0.0097 36.2 17.1 26 1367-1392 21-46 (1007)
35 cd05834 HDGF_related The PWWP 42.4 30 0.00065 34.1 3.8 44 70-114 2-45 (83)
36 PF09926 DUF2158: Uncharacteri 38.0 38 0.00083 31.3 3.5 41 71-114 1-41 (53)
37 KOG0260 RNA polymerase II, lar 36.1 3.3E+02 0.0071 38.5 12.5 13 1108-1120 1175-1187(1605)
38 cd06080 MUM1_like Mutated mela 31.5 60 0.0013 32.3 3.9 39 71-113 1-39 (80)
39 cd05835 Dnmt3b_related The PWW 30.4 53 0.0011 32.5 3.4 41 71-112 1-44 (87)
40 KOG1632 Uncharacterized PHD Zn 28.3 26 0.00056 42.7 1.1 78 129-206 3-96 (345)
41 PHA02763 hypothetical protein; 28.2 48 0.001 33.6 2.6 44 316-359 36-80 (102)
42 PF10383 Clr2: Transcription-s 28.2 2E+02 0.0043 31.0 7.4 40 59-98 1-51 (139)
43 PF11717 Tudor-knot: RNA bindi 26.6 1E+02 0.0023 28.1 4.3 37 71-109 1-37 (55)
44 PF06371 Drf_GBD: Diaphanous G 26.2 1.1E+02 0.0024 32.7 5.3 93 325-423 88-182 (187)
45 cd05162 PWWP The PWWP domain, 25.6 79 0.0017 30.7 3.6 40 71-111 1-46 (87)
46 smart00249 PHD PHD zinc finger 25.1 17 0.00037 29.9 -0.8 23 184-206 10-33 (47)
47 KOG2133 Transcriptional corepr 22.4 55 0.0012 44.3 2.4 116 65-180 140-280 (1229)
48 KOG1973 Chromatin remodeling p 22.0 22 0.00047 41.9 -1.1 20 187-206 231-254 (274)
49 PRK10708 hypothetical protein; 21.3 1.9E+02 0.004 27.7 4.8 42 72-114 2-50 (62)
50 PF14726 RTTN_N: Rotatin, an a 21.2 85 0.0019 32.3 3.0 52 373-424 45-96 (98)
51 PF11302 DUF3104: Protein of u 20.3 1.3E+02 0.0029 29.9 3.9 29 70-98 5-39 (75)
No 1
>KOG1886 consensus BAH domain proteins [Transcription]
Probab=100.00 E-value=1.3e-39 Score=378.48 Aligned_cols=440 Identities=22% Similarity=0.207 Sum_probs=379.1
Q ss_pred cCcccccccCCCcccccccccccCCCC-CCCCCCCCCCCCCceeEEEECCEEEee-CCEEEEcCCC-CCCCeEEEEEEEE
Q 000337 20 EGRRRHMWTVPPRDSAILASVADGGSA-SPSSSSSLSSSPNSVTFFSQDGRKISV-GDCALFKPPQ-DSPPFIGIIRSLT 96 (1643)
Q Consensus 20 ~~k~k~~W~~~~~~~~Ig~s~~~~gk~-~~~~~~~~~~s~kyY~Sf~iDGeeYkV-GDcVLVkped-d~pPYIArI~~Iw 96 (1643)
.++-+..|++.+.+.++|++.+..|++ .+++ +|.+|.+.|..|.. +|+|++.+++ +.+||||+|++||
T Consensus 7 ~~~~~~~~~~~~~a~~~g~a~~~qGv~~~k~~---------h~~t~~~~~g~~~~~~d~vllvped~~~pPyvaii~~i~ 77 (464)
T KOG1886|consen 7 EPKLKSELRPRDEASSMGDANKEQGVGGVKSL---------HFETFIYRGGRYINYGDSVLLVPEDPGKPPYVAIIEDIY 77 (464)
T ss_pred cccccccCCccchhhhhhhhhhhccccccccc---------cccceeeccCcccccCcceeecCCCCCCCCeeEEEeeee
Confidence 456778899999999999999999999 4555 57888888887777 9999999886 6899999999999
Q ss_pred ecCC-CcEEEEEEEEeccccccCCccc-ccCCCCCeeEEcCCcCccCccccccccEEEecCCCccCCC--CCCeEEEEEE
Q 000337 97 AGKE-NKLTLSVNWLYRPAEVKLGKGF-LLEAAPNEIFYSFHKDEIPAASLLHPCKVAFLPKGIELPS--GIGSFVCRKV 172 (1643)
Q Consensus 97 edkd-Gev~VrVqWFYRPeET~lgkg~-~~~sDPnELFLSdh~DenPleSIlGKC~Vl~l~ey~eLp~--g~dtFFCRr~ 172 (1643)
.+.. +.++++|+|||||+|+..+.+. |-..+++||||++|+|++++++|.++|.|+++..|.++++ +...|+||+.
T Consensus 78 a~~~g~~~k~ev~W~YrPee~~~~~~~~~~a~~~relF~SfH~De~~A~ti~~rC~V~fvp~~kqlp~~~~~~~f~~r~v 157 (464)
T KOG1886|consen 78 AQERGGNVKVEVQWFYRPEESEGGGSGKWGAKQPRELFLSFHEDEAFAETILHRCKVHFVPAYKQLPNRVGHESFICRRV 157 (464)
T ss_pred ccccCCCcceecccccCCCccCCCCCCCcccCCCccccccccccchhhhhhcccceeeeccccccccccCCCCCcccccc
Confidence 8766 5899999999999999875544 4456788999999999999999999999999999999995 4799999999
Q ss_pred EeCCCcEeccCCccccchh---hhhHHHHhhhcccccccCCCCCCCCCCCCCCcccccCCCCCCCCCCCCcCcccccccc
Q 000337 173 YDITNKCLWWLTDQDYINE---EVDQLLYKTHIEMHATVPSGGRSPKPMNGPTSTSQLKPGSDGAQNSASFPSQVKGKKR 249 (1643)
Q Consensus 173 YD~~~KrF~~LPDedyI~c---Ecdkwfh~tCl~m~A~~Q~gg~sP~~l~~ps~~~~lk~~sd~~qn~~sf~s~~kgkkr 249 (1643)
||..++.||++.+.+|..| +++.++.++|.+++...++.......++-+...|| +..++ +-+++.+..++
T Consensus 158 Yd~~~~~~~~~~~~~~~~~~k~e~d~~~~kt~~~~~~~~~p~~~~t~~~~~~~~~~~-~s~~~------~~~r~ss~~~~ 230 (464)
T KOG1886|consen 158 YDAVTSKLRKLRDGDFGDGQKLEIDMLVPKTGPRRGTLPDPKKVQTLNAAASKRSQQ-KSEIS------SLSRASSSVDG 230 (464)
T ss_pred cccccccccCccccchhcccccCCccchhhhcccCCCCCCccccccccccccceecc-ccccc------ccccccccccc
Confidence 9999999999999999998 99999999999999998888887777777776666 55444 33566788999
Q ss_pred ccCcCCCCccccccCccccCCCCCCCccchhhHHHHhhhhccCCccchhhHHHHHHhhcccccccccccccchhhhHHHH
Q 000337 250 ERGDQSSEPVKRERSSKMEDGNSGHSRTETNLKTEIAKITEKGGLVDYDGVEKLVQLMVPERNDKKIDLVCRSLLAGVVA 329 (1643)
Q Consensus 250 eR~~q~~~~~kr~~~~k~dd~~~~~~~~~~~lk~ei~~l~~~GGl~~~e~V~klv~LM~~~~~~kk~~L~~R~~l~~Vi~ 329 (1643)
++.+-....+.|.+..|+.+.-...+.-..-.-+++..-+++|++..-+.|..+..||+++....+.||.++..++.++.
T Consensus 231 ~~~e~~~~~t~~~~~~k~~g~~~~~v~~~~~~~s~~~~~~~~~~~~p~~~v~~~~~le~~s~~s~a~d~~~~~~~~~~l~ 310 (464)
T KOG1886|consen 231 EILESFDLLTGRSDRDKVLGKLLEVVWQNSCSTSEAKPAGDQGSLWPNPSVSPCGALEQPSHASLAKDLESYLGLRETLV 310 (464)
T ss_pred ccccCCCCCCCcccccccccccchhhccccccccccCCCcccccCCCCcccchhhhhhhhhhhhHhhhhhhhhhhhhHHH
Confidence 99999999999999999998777766445556778888899999999999999999999999998999999988888877
Q ss_pred hccchhhHHHHHHHhchhhHHHHHHHHhhccCCCCCCCCCCCCChHHHHHHHHHHhcCCCCcHHhhhhcCCCcccccccC
Q 000337 330 ATDKFDCLNWFVQLRGLLVFDEWLQEVHKGKIGDAGSPRDGDKSVEEFLLILLRALDKLPVNLNALQMCNIGKSVNHLRT 409 (1643)
Q Consensus 330 ~T~~~d~L~~Fvq~~Gl~vL~eWLqe~~K~k~gd~~sp~~~dks~ee~lLeLLraLk~lPvTlelLksT~IGktVnkLRK 409 (1643)
.+=.-+||-+|.+++|..+..+|.|++|..+-.++.++.+.++-+.+..+.++..|..++..++++...++++.+++|+-
T Consensus 311 ~~~k~~~~l~~~~ln~~~~~~e~~~~l~~p~~p~~~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 390 (464)
T KOG1886|consen 311 LLLKGQALLKPEPLNPGETKPEPKQELHPPSFPDGQSSPSSMKLNDDDYDGLCVGLELTAGSLYLYCGQEGLICAGHLPC 390 (464)
T ss_pred hhhcchhhhccccCCCcccCchhhhhccCCCCCCCccCccccccCchhHHHHHHhhhhhccchhhhcccccceeccccCC
Confidence 77779999999999999999999999999999999998888888899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhcCCC------CCcccCCCCCCCCCCccccccccccccCCCCCCcccc
Q 000337 410 HKNVEIQKKARSLVDTWKKRVEAEMDARPR------LPEVPHSGNRQTGASTEVAIKSLVTQPASSKTGAVKL 476 (1643)
Q Consensus 410 H~n~eI~kLAk~LVkkWKk~V~~e~~~kp~------~~e~~~~g~~~~~~~~~~~~k~~~s~~s~sk~~s~k~ 476 (1643)
|..++|..-+..+|..|+.++...+..++. .+|---.+.|+++.+.+ +.+.......+.+..++|.
T Consensus 391 ~~~~~v~~~~~a~~~~~~~~~~~~~~~~~~~~q~~~~~~k~~~~~ret~~~~e-a~~~~~~~~~a~~~~~~k~ 462 (464)
T KOG1886|consen 391 PMLPEVKLSPVAAVHREGLLLAPSSVPKGTPFQHPPWPEKRLCSPRETGVNGE-AICGVLPLLVAHAGTTCKG 462 (464)
T ss_pred CCCCCcCcccccccchhhhcccceeccCCCCccCCCChhhcccCccccCCchh-cccCCchhhhhcccccccC
Confidence 999999999999999999999988865544 44444455566676665 4444444555555555553
No 2
>cd04713 BAH_plant_3 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.97 E-value=6.5e-30 Score=263.55 Aligned_cols=133 Identities=50% Similarity=0.937 Sum_probs=120.5
Q ss_pred CceeEEEECCEEEeeCCEEEEcCCCCCCCeEEEEEEEEecCCCcEEEEEEEEeccccccCCc-ccccCCCCCeeEEcCCc
Q 000337 59 NSVTFFSQDGRKISVGDCALFKPPQDSPPFIGIIRSLTAGKENKLTLSVNWLYRPAEVKLGK-GFLLEAAPNEIFYSFHK 137 (1643)
Q Consensus 59 kyY~Sf~iDGeeYkVGDcVLVkpedd~pPYIArI~~IwedkdGev~VrVqWFYRPeET~lgk-g~~~~sDPnELFLSdh~ 137 (1643)
.+|++|.++|.+|+|||||||.++++.+||||+|++||+..++.++|+|+|||||+||.... +.+...++||||+|+|.
T Consensus 9 ~~y~s~~~dg~~y~vgD~Vlv~~~~~~~pyI~~I~~i~~~~~~~~~v~V~WFyRpeEi~~~~~~~~~~~~~~ElF~S~~~ 88 (146)
T cd04713 9 CHYTSFEKDGNKYRLEDCVLLVPEDDQKPYIAIIKDIYKQEEGSLKLEVQWLYRPEEIEKKKGGNWKAEDPRELFYSFHR 88 (146)
T ss_pred eeeeeEEECCEEEECCCEEEEeCCCCCCCEEEEEEEEEEcCCCCEEEEEEeeECHHHhccccccccccCCCCeEEEeCCC
Confidence 48999999999999999999999877899999999999988899999999999999997533 33445578999999999
Q ss_pred CccCccccccccEEEecCCCccCCC--CCCeEEEEEEEeCCCcEeccCCccccchh
Q 000337 138 DEIPAASLLHPCKVAFLPKGIELPS--GIGSFVCRKVYDITNKCLWWLTDQDYINE 191 (1643)
Q Consensus 138 DenPleSIlGKC~Vl~l~ey~eLp~--g~dtFFCRr~YD~~~KrF~~LPDedyI~c 191 (1643)
|+|++++|+|||+|++.+++.+++. ..++||||+.||...++||+|+|++|+.+
T Consensus 89 d~~~~~~I~gkc~V~~~~~~~~~~~~~~~~~F~cr~~yD~~~~~~~~~~~~~~~~~ 144 (146)
T cd04713 89 DEVPAESVLHPCKVAFVPKGKQIPLRKGHSGFIVRRVYDNVNKKLWKLTDQDYEDE 144 (146)
T ss_pred CcCCHHHCcceeEEEECCccccCCccCCCCeEEEEEEEcCCCCcEeeccccccccc
Confidence 9999999999999999999987773 46899999999999999999999999863
No 3
>cd04716 BAH_plantDCM_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.92 E-value=1.2e-24 Score=219.36 Aligned_cols=116 Identities=21% Similarity=0.368 Sum_probs=104.0
Q ss_pred CEEEeeCCEEEEcCCCCCCCeEEEEEEEEecCCCcEEEEEEEEeccccccCCc-ccccCCCCCeeEEcCCcCccCccccc
Q 000337 68 GRKISVGDCALFKPPQDSPPFIGIIRSLTAGKENKLTLSVNWLYRPAEVKLGK-GFLLEAAPNEIFYSFHKDEIPAASLL 146 (1643)
Q Consensus 68 GeeYkVGDcVLVkpedd~pPYIArI~~IwedkdGev~VrVqWFYRPeET~lgk-g~~~~sDPnELFLSdh~DenPleSIl 146 (1643)
|..|++||+|||.++++.++|||+|++||++.+|..+|+|+|||||+||..++ +.+ .+++|||+|+|+|++|+++|+
T Consensus 1 g~~~~lgD~V~v~~~~~~~~yi~rI~~i~e~~~g~~~~~v~WyyRpeet~~~r~~~~--~~~rEvFlS~~~D~~pl~~I~ 78 (122)
T cd04716 1 GITYNLGDDAYVQGGEGEEPFICKITEFFEGTDGKTYFTAQWFYRAEDTVIERQATN--HDKKRVFYSEIKNDNPLDCLI 78 (122)
T ss_pred CcEEEcCCEEEEECCCCCCCEEEEEEEEEEcCCCceEEEEEEEEcHHHhcccccccc--CCCceEEEecccCccchhhee
Confidence 67899999999999877899999999999999999999999999999998875 333 357999999999999999999
Q ss_pred cccEEEecCCCccCC-----CCCCeEEEEEEEeCCCcEeccCCc
Q 000337 147 HPCKVAFLPKGIELP-----SGIGSFVCRKVYDITNKCLWWLTD 185 (1643)
Q Consensus 147 GKC~Vl~l~ey~eLp-----~g~dtFFCRr~YD~~~KrF~~LPD 185 (1643)
+||+|+++..+..++ .+.++|||++.|+.....|..||+
T Consensus 79 ~Kc~V~~~~~~~~~~~~~~~~~~~df~c~~~Y~~~~~tF~~~~~ 122 (122)
T cd04716 79 SKVKILQVPPNVGTKRKKPNSEKCDYYYDMEYCVPYSTFQTLRN 122 (122)
T ss_pred eeeEEEEeCCCCCcccccccCCCceEEEeeEeccchhheEeCCC
Confidence 999999999888773 347999999999999999987763
No 4
>cd04717 BAH_polybromo BAH, or Bromo Adjacent Homology domain, as present in polybromo and yeast RSC1/2. The human polybromo protein (BAF180) is a component of the SWI/SNF chromatin-remodeling complex PBAF. It is thought that polybromo participates in transcriptional regulation. Saccharomyces cerevisiae RSC1 and RSC2 are part of the 15-subunit nucleosome remodeling RSC complex. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.90 E-value=1.6e-23 Score=208.81 Aligned_cols=114 Identities=25% Similarity=0.392 Sum_probs=100.1
Q ss_pred CEEEeeCCEEEEcCCCC-CCCeEEEEEEEEecCCCcEEEEEEEEeccccccCCcccccCCCCCeeEEcCCcCccCccccc
Q 000337 68 GRKISVGDCALFKPPQD-SPPFIGIIRSLTAGKENKLTLSVNWLYRPAEVKLGKGFLLEAAPNEIFYSFHKDEIPAASLL 146 (1643)
Q Consensus 68 GeeYkVGDcVLVkpedd-~pPYIArI~~IwedkdGev~VrVqWFYRPeET~lgkg~~~~sDPnELFLSdh~DenPleSIl 146 (1643)
|..|++||||||.+++. .++|||+|.+||++.+|..+|+|+|||||+||..+...++ .+||||+|++.|++|+++|+
T Consensus 1 g~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~g~~~~~~~Wf~rP~et~~~~~~~~--~~~Evfls~~~d~~~~~~I~ 78 (121)
T cd04717 1 GLQYRVGDCVYVANPEDPSKPIIFRIERLWKDEDGEKFFFGCWFYRPEETFHEPTRKF--YKNEVFKSPLYETVPVEEIV 78 (121)
T ss_pred CCEEECCCEEEEeCCCCCCCCEEEEEeEEEECCCCCEEEEEEEEeChHHccCCCcccc--ccCceEEcCccccccHHHhc
Confidence 56899999999999765 8899999999999988999999999999999976543322 45999999999999999999
Q ss_pred cccEEEecCCCccCCC----CCCeEEEEEEEeCCCcEeccC
Q 000337 147 HPCKVAFLPKGIELPS----GIGSFVCRKVYDITNKCLWWL 183 (1643)
Q Consensus 147 GKC~Vl~l~ey~eLp~----g~dtFFCRr~YD~~~KrF~~L 183 (1643)
|||+|++..+|.+... ..++||||+.||...+.|..+
T Consensus 79 ~kc~Vl~~~~y~~~~p~~~~~~dvy~ce~~y~~~~~~~~~~ 119 (121)
T cd04717 79 GKCAVMDVKDYIKGRPTEISEEDVYVCESRYNESAKSFKKI 119 (121)
T ss_pred CeeEEEehHHHhcCCCCCCCCCCEEEEeEEECcccccEecc
Confidence 9999999999987652 358999999999999988654
No 5
>cd04714 BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.89 E-value=1.7e-23 Score=209.91 Aligned_cols=109 Identities=33% Similarity=0.576 Sum_probs=96.7
Q ss_pred CEEEeeCCEEEEcCCCC-CCCeEEEEEEEEecCCCcEEEEEEEEeccccccCCcccccCCCCCeeEEcCCcCccCccccc
Q 000337 68 GRKISVGDCALFKPPQD-SPPFIGIIRSLTAGKENKLTLSVNWLYRPAEVKLGKGFLLEAAPNEIFYSFHKDEIPAASLL 146 (1643)
Q Consensus 68 GeeYkVGDcVLVkpedd-~pPYIArI~~IwedkdGev~VrVqWFYRPeET~lgkg~~~~sDPnELFLSdh~DenPleSIl 146 (1643)
|++|++||||||++++. .+||||+|.+||++.+|.++|+|+|||||+||..++... .+++|||+|+|.|++++++|+
T Consensus 1 ~~~~~vGD~V~v~~~~~~~~pyIgrI~~i~e~~~g~~~~~v~WfyrPeEt~~~~~~~--~~~~EvF~S~~~d~~~~~~I~ 78 (121)
T cd04714 1 KEIIRVGDCVLFKSPGRPSLPYVARIESLWEDPEGNMVVRVKWYYRPEETKGGRKPN--HGEKELFASDHQDENSVQTIE 78 (121)
T ss_pred CCEEEcCCEEEEeCCCCCCCCEEEEEEEEEEcCCCCEEEEEEEEEcHHHccCccccc--CCCCceEecCCcccccHHHhC
Confidence 57899999999999764 789999999999998899999999999999998776543 357999999999999999999
Q ss_pred cccEEEecCCCccCC-------CCCCeEEEEEEEeCCCc
Q 000337 147 HPCKVAFLPKGIELP-------SGIGSFVCRKVYDITNK 178 (1643)
Q Consensus 147 GKC~Vl~l~ey~eLp-------~g~dtFFCRr~YD~~~K 178 (1643)
|||+|++..+|.++. ...++|+|++.||+...
T Consensus 79 gkc~V~~~~ey~~~~~~~~~~~~~~d~~~Ce~~yn~~~~ 117 (121)
T cd04714 79 HKCYVLTFAEYERLARVKKKPQDGVDFYYCAGTYNPDTG 117 (121)
T ss_pred cccEEEehhHheecccccCCCCcCCCEEEEeccCCCCcC
Confidence 999999999988755 34799999999998664
No 6
>cd04370 BAH BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p), where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p), confirming the initial hypothesis that BAH plays a role in protein-protein interactions.
Probab=99.89 E-value=3.8e-23 Score=200.50 Aligned_cols=114 Identities=35% Similarity=0.559 Sum_probs=101.2
Q ss_pred CEEEeeCCEEEEcCCCC---CCCeEEEEEEEEecCCCcEEEEEEEEeccccccCCcccccCCCCCeeEEcCCcCccCccc
Q 000337 68 GRKISVGDCALFKPPQD---SPPFIGIIRSLTAGKENKLTLSVNWLYRPAEVKLGKGFLLEAAPNEIFYSFHKDEIPAAS 144 (1643)
Q Consensus 68 GeeYkVGDcVLVkpedd---~pPYIArI~~IwedkdGev~VrVqWFYRPeET~lgkg~~~~sDPnELFLSdh~DenPleS 144 (1643)
|.+|++||||||.+++. .++|||+|.+||++.++.++++|+|||||+||..+... ...+||||+|+++|++++++
T Consensus 1 g~~y~vgd~V~v~~~~~~~~~~~~i~~I~~i~~~~~~~~~~~v~wf~rp~e~~~~~~~--~~~~~Elf~s~~~~~i~v~~ 78 (123)
T cd04370 1 GITYEVGDSVYVEPDDSIKSDPPYIARIEELWEDTNGSKQVKVRWFYRPEETPKGLSP--FALRRELFLSDHLDEIPVES 78 (123)
T ss_pred CCEEecCCEEEEecCCcCCCCCCEEEEEeeeeECCCCCEEEEEEEEEchhHhcccccc--ccccceeEEecCccccCHHH
Confidence 57899999999999875 78999999999999889999999999999999876533 34679999999999999999
Q ss_pred cccccEEEecCCCccCC-----CCCCeEEEEEEEeCCCcEeccC
Q 000337 145 LLHPCKVAFLPKGIELP-----SGIGSFVCRKVYDITNKCLWWL 183 (1643)
Q Consensus 145 IlGKC~Vl~l~ey~eLp-----~g~dtFFCRr~YD~~~KrF~~L 183 (1643)
|+|||.|++..+|.+.. ...++||||+.||..++.|..+
T Consensus 79 I~gkc~V~~~~~~~~~~~~~~~~~~~~f~~r~~yd~~~~~fk~~ 122 (123)
T cd04370 79 IIGKCKVLFVSEFEGLKQRPNKIDTDDFFCRLAYDPTTKEFKAL 122 (123)
T ss_pred hccccEEEechHhhccccccccCCCCeEEEEEEECcCcceEEeC
Confidence 99999999999887652 3468999999999999988764
No 7
>PF01426 BAH: BAH domain; InterPro: IPR001025 The BAH (bromo-adjacent homology) family contains proteins such as eukaryotic DNA (cytosine-5) methyltransferases IPR001525 from INTERPRO, the origin recognition complex 1 (Orc1) proteins, as well as several proteins involved in transcriptional regulation. The BAH domain appears to act as a protein-protein interaction module specialised in gene silencing, as suggested for example by its interaction within yeast Orc1p with the silent information regulator Sir1p. The BAH module might therefore play an important role by linking DNA methylation, replication and transcriptional regulation [].; GO: 0003677 DNA binding; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 3SWR_A 3PTA_A 1M4Z_A 1ZBX_A ....
Probab=99.88 E-value=3.8e-23 Score=201.36 Aligned_cols=112 Identities=32% Similarity=0.576 Sum_probs=96.9
Q ss_pred EEEeeCCEEEEcCCC-CCCCeEEEEEEEEecCCCc--EEEEEEEEeccccccCCcccccCCCCCeeEEcCCcCccCcccc
Q 000337 69 RKISVGDCALFKPPQ-DSPPFIGIIRSLTAGKENK--LTLSVNWLYRPAEVKLGKGFLLEAAPNEIFYSFHKDEIPAASL 145 (1643)
Q Consensus 69 eeYkVGDcVLVkped-d~pPYIArI~~IwedkdGe--v~VrVqWFYRPeET~lgkg~~~~sDPnELFLSdh~DenPleSI 145 (1643)
++|++||||||.+++ ..++|||+|.+||++.++. ++++|+|||||+||...+ ...+||||+|+++|++++++|
T Consensus 1 ~~~~vGD~V~v~~~~~~~~~~v~~I~~i~~~~~~~~~~~~~v~Wf~rp~d~~~~~----~~~~~Elf~s~~~~~~~~~~I 76 (119)
T PF01426_consen 1 VTYKVGDFVYVKPDDPPEPPYVARIEEIWEDKDGNKEKMVKVRWFYRPEDTSLGK----TFSPRELFLSDHCDDIPVESI 76 (119)
T ss_dssp EEEETTSEEEEECTSTTSEEEEEEEEEEEEETTTSEEEEEEEEEEEEGGGSTTGG----HSCTTEEEEEEEEEEEEGGGE
T ss_pred CEEeCCCEEEEeCCCCCCCCEEEEEEEEEcCCCCCEEEEEEEEEeECcccccccc----cCCCCEEEEECcEeEEehhhE
Confidence 479999999999986 5789999999999988877 999999999999993222 234599999999999999999
Q ss_pred ccccEEEecCCCccCC--C--CCCeEEEEEEEeCCCcEeccCC
Q 000337 146 LHPCKVAFLPKGIELP--S--GIGSFVCRKVYDITNKCLWWLT 184 (1643)
Q Consensus 146 lGKC~Vl~l~ey~eLp--~--g~dtFFCRr~YD~~~KrF~~LP 184 (1643)
+|||.|++..+|.+.. . ..++||||+.||...++|..+|
T Consensus 77 ~gkc~V~~~~~~~~~~~~~~~~~~~F~cr~~yd~~~~~f~~~~ 119 (119)
T PF01426_consen 77 RGKCNVLHLEDYEQARPYGKEEPDTFFCRYAYDPQKKRFKKLP 119 (119)
T ss_dssp EEEEEEEEHHHHTTGCCHCHHTTTEEEEEEEEETTTTEEEE-S
T ss_pred EeeeEEEECCccccccccccCCCCEEEEEEEEeCCcCEEeCCC
Confidence 9999999998777654 2 5789999999999999997764
No 8
>smart00439 BAH Bromo adjacent homology domain.
Probab=99.88 E-value=8.5e-23 Score=198.83 Aligned_cols=113 Identities=32% Similarity=0.524 Sum_probs=99.8
Q ss_pred EEeeCCEEEEcCCC-CCCCeEEEEEEEEecCCCc-EEEEEEEEeccccccCCcccccCCCCCeeEEcCCcCccCcccccc
Q 000337 70 KISVGDCALFKPPQ-DSPPFIGIIRSLTAGKENK-LTLSVNWLYRPAEVKLGKGFLLEAAPNEIFYSFHKDEIPAASLLH 147 (1643)
Q Consensus 70 eYkVGDcVLVkped-d~pPYIArI~~IwedkdGe-v~VrVqWFYRPeET~lgkg~~~~sDPnELFLSdh~DenPleSIlG 147 (1643)
.|++||||||.+++ ..++|||+|.+||+..++. ++++|+|||||+||....... .++||||+|+++|++++++|++
T Consensus 1 ~~~vgd~V~v~~~~~~~~~~i~~I~~i~~~~~~~~~~~~v~Wf~rp~e~~~~~~~~--~~~~Elf~s~~~~~i~~~~I~~ 78 (120)
T smart00439 1 TIRVGDFVLVEPDDADEPYYIGRIEEIFETKKNSEKMVRVRWFYRPEETVLEKAAL--FDKNEVFLSDEYDTVPLSDIIG 78 (120)
T ss_pred CcccCCEEEEeCCCCCCCCEEEEEEEEEECCCCCEEEEEEEEEEChhhcccccccc--CCCcceEEEccCccCChHHeee
Confidence 48999999999986 5789999999999998888 899999999999998765432 3579999999999999999999
Q ss_pred ccEEEecCCCccCCC-----CCCeEEEEEEEeCCCcEeccCC
Q 000337 148 PCKVAFLPKGIELPS-----GIGSFVCRKVYDITNKCLWWLT 184 (1643)
Q Consensus 148 KC~Vl~l~ey~eLp~-----g~dtFFCRr~YD~~~KrF~~LP 184 (1643)
||+|++..+|.+.+. ..++||||+.||...++|.+++
T Consensus 79 kc~V~~~~~~~~~~~~~~~~~~~~f~cr~~yd~~~~~f~~~~ 120 (120)
T smart00439 79 KCNVLSKSDYPGLRPEGKIGEPDVFFCESLYDPEKGAFKKLP 120 (120)
T ss_pred EEEEEEcchhcccccccCCCCCCeEEEEEEEccccCcccCCC
Confidence 999999999877652 3689999999999999997764
No 9
>cd04760 BAH_Dnmt1_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.87 E-value=2.2e-22 Score=203.24 Aligned_cols=109 Identities=19% Similarity=0.388 Sum_probs=96.9
Q ss_pred CEEEeeCCEEEEcCCC-CCCCeEEEEEEEEecCCCcEEEEEEEEeccccccCCcccccCCCCCeeEEcCCcCccCccccc
Q 000337 68 GRKISVGDCALFKPPQ-DSPPFIGIIRSLTAGKENKLTLSVNWLYRPAEVKLGKGFLLEAAPNEIFYSFHKDEIPAASLL 146 (1643)
Q Consensus 68 GeeYkVGDcVLVkped-d~pPYIArI~~IwedkdGev~VrVqWFYRPeET~lgkg~~~~sDPnELFLSdh~DenPleSIl 146 (1643)
|.+|++||||+|++++ ..+||||+|..||++.++.++|||+||||++||++++ .++++|||||++|+++++.+|.
T Consensus 1 g~~i~vGD~V~v~~~~~~~p~~I~rV~~mfe~~~g~k~~h~rWf~Rg~dTVlG~----~~~~kEvFlsd~c~d~~l~~I~ 76 (124)
T cd04760 1 GEELEAGDCVSVKPDDPTKPLYIARVTYMWKDSIGGKMFHAHWFCRGSDTVLGE----TSDPLELFLVDECEDMALSSIH 76 (124)
T ss_pred CCEEecCCEEEEecCCCCCCcEEEEEhhheecCCCCcEEEEEEEEECCcccccc----cCCCcEEEeecccCCcchHHhe
Confidence 5789999999999864 5789999999999999999999999999999999987 4689999999999999999999
Q ss_pred cccEEEecCCC--------ccCC-----CCCCeEEEEEEEeCCCcEe
Q 000337 147 HPCKVAFLPKG--------IELP-----SGIGSFVCRKVYDITNKCL 180 (1643)
Q Consensus 147 GKC~Vl~l~ey--------~eLp-----~g~dtFFCRr~YD~~~KrF 180 (1643)
+||+|++...- .+.+ .+.++|||+++||+..+||
T Consensus 77 ~Kv~V~~~~p~~~w~~~~g~~~~~~~~~ddg~tffyq~~yd~~~arf 123 (124)
T cd04760 77 GKVNVIYKAPSENWSMEGGMDEEDEIFEDDGKTFFYQKWYDPECARF 123 (124)
T ss_pred eeeEEEEeCCCcchhhhcCCCCccccccCCCCeEEEEEeeChhhhcc
Confidence 99999987633 2222 3579999999999998887
No 10
>cd04715 BAH_Orc1p_like BAH, or Bromo Adjacent Homology domain, as present in the Schizosaccharomyces pombe homolog of Saccharomyces cerevisiae Orc1p and similar proteins. Orc1 is part of the Yeast Sir1-origin recognition complex, the Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.87 E-value=4.7e-22 Score=208.43 Aligned_cols=121 Identities=21% Similarity=0.354 Sum_probs=96.7
Q ss_pred CceeEEEECCEEEeeCCEEEEcCCCCCCCeEEEEEEEEecCC--CcEEEEEEEEeccccccCCcccccCCCCCeeEEcCC
Q 000337 59 NSVTFFSQDGRKISVGDCALFKPPQDSPPFIGIIRSLTAGKE--NKLTLSVNWLYRPAEVKLGKGFLLEAAPNEIFYSFH 136 (1643)
Q Consensus 59 kyY~Sf~iDGeeYkVGDcVLVkpedd~pPYIArI~~Iwedkd--Gev~VrVqWFYRPeET~lgkg~~~~sDPnELFLSdh 136 (1643)
+||++|+++|.+|+|||||||++++ .+||||+|.+||+..+ +.++++|+|||||+||....+......+||||+|+|
T Consensus 18 ~~Y~s~~~~g~~y~lGD~Vlv~s~~-~~~yIgkI~~iwe~~~~~g~~~~~v~WfyRp~E~~~~~~~~~~~~~nEvFlS~~ 96 (159)
T cd04715 18 QFYRSFTYDGVEYRLYDDVYVHNGD-SEPYIGKIIKIYETAIDSGKKKVKVIWFFRPSEIRMELKGEPKRHINEVFLACG 96 (159)
T ss_pred eEEEEEEECCEEEeCCCEEEEeCCC-CCCEEEEEEEEEEcCCcCCceEEEEEeeeCHHHhccccccCcccCCCcEEEecC
Confidence 3899999999999999999999854 8999999999999765 889999999999999975322112335799999998
Q ss_pred c-----CccCccccccccEEEecCCCccCC-C--C---CCeEEEEEEEeCCCcEe
Q 000337 137 K-----DEIPAASLLHPCKVAFLPKGIELP-S--G---IGSFVCRKVYDITNKCL 180 (1643)
Q Consensus 137 ~-----DenPleSIlGKC~Vl~l~ey~eLp-~--g---~dtFFCRr~YD~~~KrF 180 (1643)
+ +++|+++|+|||+|+++.+|...+ . + ...|++-+.||+..++.
T Consensus 97 ~d~~~~~~n~l~sI~gKC~Vl~~~ey~~~~~~s~~~~~~~~~~f~~~f~~~~~~~ 151 (159)
T cd04715 97 RGEGLANINLLESIIGKCNVVCISEDFRNPQPSDGIPTSADFLFPCNFDVGRCVI 151 (159)
T ss_pred cCccccccCcHHHccceeEEEEehHhhhCCCCcCCccccCcceeeeEEEecCcee
Confidence 6 568999999999999999887543 2 1 34455555666666553
No 11
>cd04709 BAH_MTA BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.87 E-value=5.3e-22 Score=208.86 Aligned_cols=120 Identities=24% Similarity=0.350 Sum_probs=101.7
Q ss_pred EEEeeCCEEEEcCCCCCCCeEEEEEEEEecCCCcEEEEEEEEeccccccCC------c--c------------cccCCCC
Q 000337 69 RKISVGDCALFKPPQDSPPFIGIIRSLTAGKENKLTLSVNWLYRPAEVKLG------K--G------------FLLEAAP 128 (1643)
Q Consensus 69 eeYkVGDcVLVkpedd~pPYIArI~~IwedkdGev~VrVqWFYRPeET~lg------k--g------------~~~~sDP 128 (1643)
+.|+|||||||.++.+.|+|||+|++||+..++.++|+|+|||||+||... + + ..+..+.
T Consensus 2 ~~yrvGD~Vy~~~~~~~Py~I~rI~e~~~~~~~~~~vkV~wfYRp~DI~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~~ 81 (164)
T cd04709 2 NMYRVGDYVYFESSPNNPYLIRRIEELNKTARGHVEAKVVCYYRRRDIPDSLYQLADQHRRELEEKSDDLTPKQRHQLRH 81 (164)
T ss_pred cEEecCCEEEEECCCCCCCEEEEEEEEEeCCCCCEEEEEEEEEChhHccchhhhhcccccccccccccccchhhhhccCc
Confidence 589999999999876567789999999999999999999999999998532 1 1 1233578
Q ss_pred CeeEEcCCcCccCccccccccEEEecCCCccCC---CCCCeEEEEEEEeCCCcEeccCCccccch
Q 000337 129 NEIFYSFHKDEIPAASLLHPCKVAFLPKGIELP---SGIGSFVCRKVYDITNKCLWWLTDQDYIN 190 (1643)
Q Consensus 129 nELFLSdh~DenPleSIlGKC~Vl~l~ey~eLp---~g~dtFFCRr~YD~~~KrF~~LPDedyI~ 190 (1643)
+|||+|+|.|.+|+.+|.|||.|+.+.+|..+. ...++|||+..||+.+++| +.++.-|.
T Consensus 82 rELF~S~~~d~~p~~~IrGKC~V~~~~d~~~l~~~~~~~d~Ff~~~~YDP~~k~l--~~~~geir 144 (164)
T cd04709 82 RELFLSRQVETLPATHIRGKCSVTLLNDTESARSYLAREDTFFYSLVYDPEQKTL--LADQGEIR 144 (164)
T ss_pred ceeEEecccccccHHHeeeeEEEEEehhhhhhhhccCCCCEEEEEEEECCCCCee--cccceeEE
Confidence 999999999999999999999999999988765 3579999999999999998 55554443
No 12
>cd04710 BAH_fungalPHD BAH, or Bromo Adjacent Homology domain, as present in fungal proteins containing PHD domains. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.86 E-value=7.5e-22 Score=202.10 Aligned_cols=115 Identities=21% Similarity=0.375 Sum_probs=98.5
Q ss_pred EEEECCEEEeeCCEEEEcCCC-CCCCeEEEEEEEEecCC------------CcEEEEEEEEeccccccCCcccccCCCCC
Q 000337 63 FFSQDGRKISVGDCALFKPPQ-DSPPFIGIIRSLTAGKE------------NKLTLSVNWLYRPAEVKLGKGFLLEAAPN 129 (1643)
Q Consensus 63 Sf~iDGeeYkVGDcVLVkped-d~pPYIArI~~Iwedkd------------Gev~VrVqWFYRPeET~lgkg~~~~sDPn 129 (1643)
-+..+|..|++||||||.+++ ..|+|||||++|+...+ +..+|+|+|||||+||.... .+|++
T Consensus 4 ~~~~~g~~~~vgD~Vyv~~~~~~ePyyIgrI~e~~~~~~~~~~~~~~~~~~~~~~vrV~wfYRp~Di~~~~----~~d~r 79 (135)
T cd04710 4 LVLKNGELLKVNDHIYMSSEPPGEPYYIGRIMEFVPKHEFPSGIHARVFPASYFQVRLNWYYRPRDISRRV----VADSR 79 (135)
T ss_pred EEccCCeEEeCCCEEEEecCCCCCCCEEEEEEEEEecCCCCccccccccCCCcEEEEEEEEeCHHHcCCcc----cCCce
Confidence 356789999999999999975 46788999999998532 34689999999999986443 46899
Q ss_pred eeEEcCCcCccCccccccccEEEecCCCccCC---CCCCeEEEEEEEeCCCcEec
Q 000337 130 EIFYSFHKDEIPAASLLHPCKVAFLPKGIELP---SGIGSFVCRKVYDITNKCLW 181 (1643)
Q Consensus 130 ELFLSdh~DenPleSIlGKC~Vl~l~ey~eLp---~g~dtFFCRr~YD~~~KrF~ 181 (1643)
|||+|+|.|.+|+++|.|||+|++..++..+. ...++|||.+.||+..++|+
T Consensus 80 elf~S~h~d~~p~~si~gKC~V~~~~di~~l~~~~~~~~~Fyf~~lyD~~~~r~~ 134 (135)
T cd04710 80 LLYASMHSDICPIGSVRGKCTVRHRDQIPDLEEYKKRPNHFYFDQLFDRYILRYY 134 (135)
T ss_pred EEEEEeeEeeechHHEEeEEEEEEecccchhhhhccCCCEEEEEeeeCcchhhcc
Confidence 99999999999999999999999998776554 35799999999999999885
No 13
>cd04721 BAH_plant_1 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.86 E-value=8.8e-22 Score=200.32 Aligned_cols=113 Identities=20% Similarity=0.273 Sum_probs=97.9
Q ss_pred EEECCEEEeeCCEEEEcCCCCCCCeEEEEEEEEecCCCcEEEEEEEEeccccccCCcccccCCCCCeeEEcCCcCccCcc
Q 000337 64 FSQDGRKISVGDCALFKPPQDSPPFIGIIRSLTAGKENKLTLSVNWLYRPAEVKLGKGFLLEAAPNEIFYSFHKDEIPAA 143 (1643)
Q Consensus 64 f~iDGeeYkVGDcVLVkpedd~pPYIArI~~IwedkdGev~VrVqWFYRPeET~lgkg~~~~sDPnELFLSdh~DenPle 143 (1643)
|+.||.+|++||||||++++ .++|||+|.+||++.+|.++++|+|||||+||..+.+.. ...+||||+|++.|+|+++
T Consensus 1 ~~r~~~~i~vGD~V~v~~~~-~~~~va~Ie~i~ed~~g~~~v~v~WF~~p~E~~~~~~~~-~~~~~EvFlS~~~d~i~~~ 78 (130)
T cd04721 1 FCRNGVTISVHDFVYVLSEE-EDRYVAYIEDLYEDKKGSKMVKVRWFHTTDEVGAALSPD-SVNPREIFLSPNLQVISVE 78 (130)
T ss_pred CccCCEEEECCCEEEEeCCC-CCcEEEEEEEEEEcCCCCEEEEEEEecCHHHhccccCCC-CCCCCeEEEcCCccccchH
Confidence 46789999999999999875 788999999999998899999999999999997754322 1356999999999999999
Q ss_pred ccccccEEEecCCCccCCC-C-----CCeEEEEEEEeCCCc
Q 000337 144 SLLHPCKVAFLPKGIELPS-G-----IGSFVCRKVYDITNK 178 (1643)
Q Consensus 144 SIlGKC~Vl~l~ey~eLp~-g-----~dtFFCRr~YD~~~K 178 (1643)
+|+|||+|+..++|.++.. . .++|+||+.||....
T Consensus 79 ~I~gk~~Vls~~~y~k~~~~~~~~~~~~~f~C~~~~d~~~~ 119 (130)
T cd04721 79 CIDGLATVLTREHYEKFQSVPKNSSELQAYFCYRQIDNNKV 119 (130)
T ss_pred HeeeeeEECCHHHHhhhhccccCccccccEEEEEEecCCCC
Confidence 9999999999999987652 1 469999999998754
No 14
>cd04712 BAH_DCM_I BAH, or Bromo Adjacent Homology domain, as present in DNA (Cytosine-5)-methyltransferases (DCM) 1. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.85 E-value=4.5e-21 Score=195.20 Aligned_cols=114 Identities=19% Similarity=0.253 Sum_probs=98.7
Q ss_pred CCEEEeeCCEEEEcCCCCC-----------CCeEEEEEEEEecCCCcEEEEEEEEeccccccCCcccccCCCCCeeEEcC
Q 000337 67 DGRKISVGDCALFKPPQDS-----------PPFIGIIRSLTAGKENKLTLSVNWLYRPAEVKLGKGFLLEAAPNEIFYSF 135 (1643)
Q Consensus 67 DGeeYkVGDcVLVkpedd~-----------pPYIArI~~IwedkdGev~VrVqWFYRPeET~lgkg~~~~sDPnELFLSd 135 (1643)
+|..|+|||+|+|.+++.. ++||++|..||++.+|.++||++|||||+||++++ ..++||||||+
T Consensus 2 ~~~~i~vGD~V~v~~d~~~~~~~~~~~~~~~~~i~~V~~~~e~~~g~~~~h~~W~yrp~eTv~g~----~~~~~ElFLSd 77 (130)
T cd04712 2 HGLTIRVGDVVSVERDDADSTTKWNDDHRWLPLVQFVEYMKKGSDGSKMFHGRWLYRGCDTVLGN----YANERELFLTN 77 (130)
T ss_pred CCCEEeCCCEEEEcCCCCCccccccccccccceEEEEEEeeecCCCceEEEEEEEEcchhccccc----cCCCceEEEec
Confidence 5789999999999998643 78999999999999999999999999999999988 45689999999
Q ss_pred CcCccCcc----ccccccEEEecCCCccCCCCCCeEEEEEEEeCCCcEeccCCc
Q 000337 136 HKDEIPAA----SLLHPCKVAFLPKGIELPSGIGSFVCRKVYDITNKCLWWLTD 185 (1643)
Q Consensus 136 h~DenPle----SIlGKC~Vl~l~ey~eLp~g~dtFFCRr~YD~~~KrF~~LPD 185 (1643)
||+.+++. .|++||.|++...+.. ....+.|||+..|+++.+.|..|++
T Consensus 78 ~c~~~~~~~~~~~I~~k~~V~~~~~~~~-~~~~~~F~r~syy~~e~~~F~~l~~ 130 (130)
T cd04712 78 ECTCLELDLLSTEIKGVHKVDWSGTPWG-KGLPEFFVRQSYYWPERGAFTSLKR 130 (130)
T ss_pred cccccccccccceeEEEEEEEEecCcCC-cCCCCEEEEEEEECccCCceEcCCC
Confidence 99999999 9999999998876653 1234567777788889999988763
No 15
>cd04708 BAH_plantDCM_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.84 E-value=5.9e-21 Score=205.98 Aligned_cols=120 Identities=23% Similarity=0.297 Sum_probs=102.2
Q ss_pred EEECCEEEeeCCEEEEcCC------------------CCCCCeEEEEEEEEecCCC------cEEEEEEEEeccccccCC
Q 000337 64 FSQDGRKISVGDCALFKPP------------------QDSPPFIGIIRSLTAGKEN------KLTLSVNWLYRPAEVKLG 119 (1643)
Q Consensus 64 f~iDGeeYkVGDcVLVkpe------------------dd~pPYIArI~~IwedkdG------ev~VrVqWFYRPeET~lg 119 (1643)
|+++|.+|+|||+|||.|+ +..+.+||+|.+|+..++. .++|+|+|||||+||...
T Consensus 1 f~~~Gv~Y~vgD~VYv~p~~f~~~~~~~~~~~~G~N~~~~p~~I~qI~ei~~~k~~~~~~~~~~~vrVrwFYRPEdt~~~ 80 (202)
T cd04708 1 FVYDGVTYSVGDFLYVSPDAFAEEERERATFKAGRNVGLKAFVVCQVLEIVVEKESKQADVASTQVKVRRFYRPEDVSPE 80 (202)
T ss_pred CcCCCEEEecCCeEEECcccccccccccccccccccCCCCCcEEEEEEEEEecccCCCCCCcceEEEEEEEechhhcCcc
Confidence 6789999999999999998 1235679999999875443 689999999999998552
Q ss_pred cccccCCCCCeeEEcCCcCccCccccccccEEEecCCCccCC---CCCCeEEEEEEEeCCCcEeccCCc
Q 000337 120 KGFLLEAAPNEIFYSFHKDEIPAASLLHPCKVAFLPKGIELP---SGIGSFVCRKVYDITNKCLWWLTD 185 (1643)
Q Consensus 120 kg~~~~sDPnELFLSdh~DenPleSIlGKC~Vl~l~ey~eLp---~g~dtFFCRr~YD~~~KrF~~LPD 185 (1643)
. -+.+|.+|||||+|.+++++++|.|||+|++..++.++. ...+.|||++.||+.++.|..||.
T Consensus 81 -~-~y~sd~rely~Sde~~~~~~~~I~GKC~V~~~~d~~~~~~~~~~~~~Ffc~~~Yd~~tg~f~~lP~ 147 (202)
T cd04708 81 -K-AYASDIREVYYSEDTLTVPVEAVEGKCEVRKKSDLPDSDAPVIFEHVFFCELLYDPAKGSLKQLPP 147 (202)
T ss_pred -c-ceecCceeEEEeccceeechhHcceEEEEEecCcchhhhccccCCCceEEEEEEcCCCCccCCCCc
Confidence 2 234588999999999999999999999999998776544 347999999999999999999886
No 16
>cd04720 BAH_Orc1p_Yeast BAH, or Bromo Adjacent Homology domain, as present in Orc1p, which again is part of the Saccharomyces cerevisiae Sir1-origin recognition complex, and as present in Sir3p. The Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.82 E-value=3.1e-20 Score=197.87 Aligned_cols=121 Identities=23% Similarity=0.374 Sum_probs=102.8
Q ss_pred EEEE-CCEEEeeCCEEEEcCCCCCCCeEEEEEEEEecCC-CcEEEEEEEEeccccccCCcc--ccc-----CCCCCeeEE
Q 000337 63 FFSQ-DGRKISVGDCALFKPPQDSPPFIGIIRSLTAGKE-NKLTLSVNWLYRPAEVKLGKG--FLL-----EAAPNEIFY 133 (1643)
Q Consensus 63 Sf~i-DGeeYkVGDcVLVkpedd~pPYIArI~~Iwedkd-Gev~VrVqWFYRPeET~lgkg--~~~-----~sDPnELFL 133 (1643)
.... +|.+|++||||+|++++..++|||+|..|+.+.. +.+.++|+|||||.|+...+. .++ ...+|||||
T Consensus 44 l~R~~d~~~~~vGD~Vlik~~~~~~~~V~iI~ei~~~~~~~~v~i~v~Wy~r~~Ei~~~~~~~~~~~~~~~~~~~nElfl 123 (179)
T cd04720 44 LARDSDGLELSVGDTILVKDDVANSPSVYLIHEIRLNTLNNEVELWVMWFLRWFEINPARYYKQFDPEFRSESNKNELYL 123 (179)
T ss_pred EEEccCCeEEeCCCEEEEeCCCCCCCEEEEEEEEEeCCCCCEEEEEEEEcCCHHHcccccccccccchhcccCCCceEEE
Confidence 3344 8899999999999998778999999999998765 668999999999999976442 222 234799999
Q ss_pred cCCcCccCccccccccEEEecCCCccCC----CCCCeEEEEEEEeCCCcEeccC
Q 000337 134 SFHKDEIPAASLLHPCKVAFLPKGIELP----SGIGSFVCRKVYDITNKCLWWL 183 (1643)
Q Consensus 134 Sdh~DenPleSIlGKC~Vl~l~ey~eLp----~g~dtFFCRr~YD~~~KrF~~L 183 (1643)
|.|+|+|++.+|++||+||...+|.++. .+..+||||++||+.++.|.|.
T Consensus 124 T~~~d~i~l~~Ii~k~~Vls~~ef~~~~~~~~~~~~~F~cR~~~d~~~~~F~~~ 177 (179)
T cd04720 124 TAELSEIKLKDIIDKANVLSESEFNDLSTDDKNGERTFFCRYACEPDGEEFVWI 177 (179)
T ss_pred ecccceEEhhheeeeEEEecHHHhhhhcccccCCCceEEEEEEEeCCCCeEccc
Confidence 9999999999999999999999888654 2478999999999999999764
No 17
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.76 E-value=1.4e-19 Score=187.19 Aligned_cols=96 Identities=18% Similarity=0.296 Sum_probs=87.6
Q ss_pred CCCeEEEEEEEEecCCCcEEEEEEEEeccccccCCcccccCCCCCeeEEcCCcCccCccccccccEEEecCCCccCC-CC
Q 000337 85 SPPFIGIIRSLTAGKENKLTLSVNWLYRPAEVKLGKGFLLEAAPNEIFYSFHKDEIPAASLLHPCKVAFLPKGIELP-SG 163 (1643)
Q Consensus 85 ~pPYIArI~~IwedkdGev~VrVqWFYRPeET~lgkg~~~~sDPnELFLSdh~DenPleSIlGKC~Vl~l~ey~eLp-~g 163 (1643)
..+|||+|++||++. |..+|+|+|||||+||..+++.++.. +|||+|+|.|++++++|+|||.|+...+|.++. .+
T Consensus 51 ~~~~vArIekiW~~~-G~~~~~grWy~rPEET~~gr~~~~~~--kEvFlS~~~d~~~~~~I~gkC~V~~~keY~k~e~~g 127 (148)
T cd04718 51 GDLWLARIEKLWEEN-GTYWYAARWYTLPEETHMGRQPHNLR--RELYLTNDFADIEMECILRHCSVKCPKEFRDASNDG 127 (148)
T ss_pred CchHHHHHHHHHhcc-CceEEEEEEEeCchhccCcccccccc--ceeeeccccccccHHHHhcccEEcCHHHcccccCCC
Confidence 479999999999986 89999999999999999988766543 999999999999999999999999999998876 56
Q ss_pred CCeEEEEEEEeCCCcEeccC
Q 000337 164 IGSFVCRKVYDITNKCLWWL 183 (1643)
Q Consensus 164 ~dtFFCRr~YD~~~KrF~~L 183 (1643)
.++|||++.||...++|..+
T Consensus 128 ~Dvy~Ce~~Yd~~~~~Fkr~ 147 (148)
T cd04718 128 DDVFLCEYEYDVHWQSFKRL 147 (148)
T ss_pred CceEEEEEEEhhhcCceeec
Confidence 89999999999999999754
No 18
>cd04719 BAH_Orc1p_animal BAH, or Bromo Adjacent Homology domain, as present in animal homologs of Saccharomyces cerevisiae Orc1p. Orc1 is part of the Yeast Sir1-origin recognition complex. The Orc1p BAH doman functions in epigenetic silencing. In vertebrates, a similar ORC protein complex exists, which has been shown essential for DNA replication in Xenopus laevis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.74 E-value=5.5e-18 Score=172.59 Aligned_cols=111 Identities=24% Similarity=0.388 Sum_probs=91.5
Q ss_pred EEEeeCCEEEEcCCCCCCCeEEEEEEEEecCCC---cEEEEEEEEeccccccCCccccc--CCCCCeeEEcCCc---Ccc
Q 000337 69 RKISVGDCALFKPPQDSPPFIGIIRSLTAGKEN---KLTLSVNWLYRPAEVKLGKGFLL--EAAPNEIFYSFHK---DEI 140 (1643)
Q Consensus 69 eeYkVGDcVLVkpedd~pPYIArI~~IwedkdG---ev~VrVqWFYRPeET~lgkg~~~--~sDPnELFLSdh~---Den 140 (1643)
.+|+|||||||.+++..+||||+|++||++.++ ..+++|||||||+|++...+... ...++|||+++|. |++
T Consensus 2 ~~i~vGd~VlI~~~d~~~~yVAkI~~i~e~~~~~~~~~~~~VqWy~R~~Ev~~~~~~~~~~~~~~~EvF~~~~~~~~~~i 81 (128)
T cd04719 2 LTIEVGDFVLIEGEDADGPDVARILHLYEDGNEDDDPKRAIVQWFSRPSEVPKNKRKLLGREPHSQEVFFYSRSSCDNDI 81 (128)
T ss_pred eEEecCCEEEEECCCCCCCcEeeehhhhccccCCcccceEEEEcccChHHccccchhhccCCCCCcEEEEecCccccCcE
Confidence 479999999999987688999999999998765 46999999999999964321111 2367999999987 489
Q ss_pred CccccccccEEEecCCCccCC-C---CCCeEEEEEEEeCCCcE
Q 000337 141 PAASLLHPCKVAFLPKGIELP-S---GIGSFVCRKVYDITNKC 179 (1643)
Q Consensus 141 PleSIlGKC~Vl~l~ey~eLp-~---g~dtFFCRr~YD~~~Kr 179 (1643)
.+++|.|||+|+.+..|.+++ . ....||.|+.|+....+
T Consensus 82 ~~etI~gkc~V~~~~~y~~l~~~~~~~~~~~F~r~~~~~k~~~ 124 (128)
T cd04719 82 DAETIIGKVRVEPVEPKTDLPETKKKTGGPLFVKRYWDTKTFR 124 (128)
T ss_pred eHHHcccEEEEEEcCCccchhhhccccCceEEEEEEecccccc
Confidence 999999999999999999888 2 36788888888866553
No 19
>cd04711 BAH_Dnmt1_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.66 E-value=7.7e-17 Score=164.78 Aligned_cols=101 Identities=21% Similarity=0.303 Sum_probs=83.6
Q ss_pred CCCCeEEEEEEEEecCCC-------cEEEEEEEEeccccccCCcccccCCCCCeeEEcCCcCccCccccccccEEEecCC
Q 000337 84 DSPPFIGIIRSLTAGKEN-------KLTLSVNWLYRPAEVKLGKGFLLEAAPNEIFYSFHKDEIPAASLLHPCKVAFLPK 156 (1643)
Q Consensus 84 d~pPYIArI~~IwedkdG-------ev~VrVqWFYRPeET~lgkg~~~~sDPnELFLSdh~DenPleSIlGKC~Vl~l~e 156 (1643)
+.|+|||+|++|...+++ .++|+|+|||||+||..+...-+..|.||||+|+|.|.+++.+|.|||+|++..+
T Consensus 24 ~ePy~VgrI~eI~~~k~~~~k~~~~~ikvrV~~fYRPEdi~~g~~~ayhsDirevy~Sd~~~~~~~~~I~GKC~V~~~~d 103 (137)
T cd04711 24 PEPFRIGRIKEIFCAKRSNGKPNESDIKLRINKFYRPENTHKGFKATYHADINMLYWSDEEATVDFSAVQGRCTVEYGED 103 (137)
T ss_pred CCCcEEEEEEEEecCCCCCCCCCccceEEEEEEEecccccccccccccccceeeEEeecceeecChhhccceEEEEeccc
Confidence 467889999999875432 4689999999999999876554556889999999999999999999999996654
Q ss_pred Ccc-C---C-CCCCeEEEEEEEeCCCcEeccCC
Q 000337 157 GIE-L---P-SGIGSFVCRKVYDITNKCLWWLT 184 (1643)
Q Consensus 157 y~e-L---p-~g~dtFFCRr~YD~~~KrF~~LP 184 (1643)
..+ + . .+.+.|||++.||..++.|.++|
T Consensus 104 i~~s~~~y~~~gpd~Fyf~~~Y~a~t~~F~d~p 136 (137)
T cd04711 104 LPESVQEYSGGGPDRFYFLEAYNAKTKSFEDPP 136 (137)
T ss_pred cchhHHHHhcCCCcceEEhhhhccccCcccCCC
Confidence 321 1 1 35799999999999999998766
No 20
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=99.38 E-value=2.7e-13 Score=127.02 Aligned_cols=58 Identities=45% Similarity=0.652 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHhcCCCCcHHhhhhcCCCcccccccCCCCHHHHHHHHHHHHHHHHHHH
Q 000337 374 VEEFLLILLRALDKLPVNLNALQMCNIGKSVNHLRTHKNVEIQKKARSLVDTWKKRVE 431 (1643)
Q Consensus 374 ~ee~lLeLLraLk~lPvTlelLksT~IGktVnkLRKH~n~eI~kLAk~LVkkWKk~V~ 431 (1643)
+++.|+++|++|+.+|||+++|+.|+||+.||+||||+|++|+.+|+.||+.||++|+
T Consensus 17 ~~~~~l~~L~~L~~~~~t~~~L~~T~iG~~v~~Lrkh~~~~I~~~A~~Li~~WK~~v~ 74 (75)
T smart00509 17 EVSRCLDILKKLKKLPITVDLLEETRIGKKVNGLRKHKNEEIRKLAKKLIKSWKKLVY 74 (75)
T ss_pred CHHHHHHHHHHHhcCCCCHHHHHHCcHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhc
Confidence 4789999999999999999999999999999999999999999999999999999985
No 21
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=99.32 E-value=1.7e-12 Score=121.66 Aligned_cols=58 Identities=47% Similarity=0.696 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHhcCCCCcHHhhhhcCCCcccccccCCCCHHHHHHHHHHHHHHHHHHH
Q 000337 374 VEEFLLILLRALDKLPVNLNALQMCNIGKSVNHLRTHKNVEIQKKARSLVDTWKKRVE 431 (1643)
Q Consensus 374 ~ee~lLeLLraLk~lPvTlelLksT~IGktVnkLRKH~n~eI~kLAk~LVkkWKk~V~ 431 (1643)
..+.|+++|++|+.+|||+++|++|+||+.||+||||.+++|+++|+.||++||++|+
T Consensus 19 ~~~~~~~~L~~L~~~~it~~~L~~T~iG~~V~~Lrkh~~~~i~~~A~~Lv~~Wk~~v~ 76 (76)
T cd00183 19 EVSRLLDLLRLLKKLPLTVEILKETRIGKKVNSLRKHSNEKIRKLAKALIKSWKKLVD 76 (76)
T ss_pred CHHHHHHHHHHHhcCCCCHHHHHHCCHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcC
Confidence 5789999999999999999999999999999999999999999999999999999873
No 22
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.25 E-value=4.9e-12 Score=154.19 Aligned_cols=119 Identities=24% Similarity=0.281 Sum_probs=105.9
Q ss_pred ceeE-EEECCEEEeeCCEEEEcCCCC-CCCeEEEEEEEEecCCCcEEEEEEEEeccccccC-CcccccCCCCCeeEEcCC
Q 000337 60 SVTF-FSQDGRKISVGDCALFKPPQD-SPPFIGIIRSLTAGKENKLTLSVNWLYRPAEVKL-GKGFLLEAAPNEIFYSFH 136 (1643)
Q Consensus 60 yY~S-f~iDGeeYkVGDcVLVkpedd-~pPYIArI~~IwedkdGev~VrVqWFYRPeET~l-gkg~~~~sDPnELFLSdh 136 (1643)
++.. +.+||..|.+||+|||....+ ..|.|++|..+|+..+|..|+.++|||||++|.. ..+.|+. +|+|.+..
T Consensus 179 ~~~~~~~i~~~~~~~gd~vlv~~~~d~~~p~v~~Ier~w~~~dg~k~~~~~w~~rP~~T~H~a~r~F~k---~Evfkt~~ 255 (629)
T KOG1827|consen 179 HELGPVEIDGTKYIVGDYVLVQNPADNLKPIVAQIERLWKLPDGEKWPQGCWIYRPEETVHRADRKFYK---QEVFKTSL 255 (629)
T ss_pred ccCCCccccCcccccCceeeecCcccccCCceeeecccccCcccccccceeEeeCCccCccccccchhc---ccceeccc
Confidence 3344 789999999999999998865 8899999999999999999999999999999954 6666776 99999999
Q ss_pred cCccCccccccccEEEecCCCccCC----CCCCeEEEEEEEeCCCcEec
Q 000337 137 KDEIPAASLLHPCKVAFLPKGIELP----SGIGSFVCRKVYDITNKCLW 181 (1643)
Q Consensus 137 ~DenPleSIlGKC~Vl~l~ey~eLp----~g~dtFFCRr~YD~~~KrF~ 181 (1643)
+.+.++..|+|+|.|+++.+|.... ...+.|+|.++|+...+.|-
T Consensus 256 ~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~dv~lcesRyn~~~K~f~ 304 (629)
T KOG1827|consen 256 YRDDLVQRLLGKCYVMKPTEYISGDPENLSEEDVFLCESRYNEQLKKFN 304 (629)
T ss_pred ccccHHHHhhcceEEeehhHhhhcCcccccccceeeEEeeeccchhhhc
Confidence 9999999999999999999987654 23799999999999999873
No 23
>TIGR01385 TFSII transcription elongation factor S-II. This model represents eukaryotic transcription elongation factor S-II. This protein allows stalled RNA transcription complexes to perform a cleavage of the nascent RNA and restart at the newly generated 3-prime end.
Probab=99.18 E-value=4.7e-11 Score=136.82 Aligned_cols=64 Identities=33% Similarity=0.503 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHhcCCCCcHHhhhhcCCCcccccccCCCCHHHHHHHHHHHHHHHHHHHHHhhcC
Q 000337 374 VEEFLLILLRALDKLPVNLNALQMCNIGKSVNHLRTHKNVEIQKKARSLVDTWKKRVEAEMDAR 437 (1643)
Q Consensus 374 ~ee~lLeLLraLk~lPvTlelLksT~IGktVnkLRKH~n~eI~kLAk~LVkkWKk~V~~e~~~k 437 (1643)
.++.||++|++|+.++||+++|++|+||+.||+||||.+++|++||+.||++||++|+.++..+
T Consensus 19 ~~~~~l~~L~~L~~~~~t~~lL~~T~IG~~Vn~lrkh~~~~I~~lAk~li~~WK~~v~~~k~~~ 82 (299)
T TIGR01385 19 NVEQCLDILHQLKEFPPTEELLQETKVGVKVNKLRKHPNEDISKLAKKIIKSWKKVVDKNKSDH 82 (299)
T ss_pred CHHHHHHHHHHHhcCCCcHHHHhhCchhHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 3678999999999999999999999999999999999999999999999999999999875443
No 24
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=99.11 E-value=2.9e-11 Score=105.84 Aligned_cols=52 Identities=44% Similarity=0.802 Sum_probs=47.7
Q ss_pred HHHHHhcCCCCcHHhhhhcCCCcccccccCC-CCHHHHHHHHHHHHHHHHHHH
Q 000337 380 ILLRALDKLPVNLNALQMCNIGKSVNHLRTH-KNVEIQKKARSLVDTWKKRVE 431 (1643)
Q Consensus 380 eLLraLk~lPvTlelLksT~IGktVnkLRKH-~n~eI~kLAk~LVkkWKk~V~ 431 (1643)
++|+.|+.+|||.++|++|+||++|+.|||| .+++|+++|+.||++||++|+
T Consensus 1 ~iL~~L~~l~it~~~L~~T~IGk~V~~l~k~~~~~~i~~~A~~Li~~Wk~~v~ 53 (53)
T PF08711_consen 1 EILKVLEKLPITVELLKSTGIGKAVNKLRKHSENPEIRKLAKELIKKWKRIVD 53 (53)
T ss_dssp HHHHHHHCSS-SHHHHHHHSHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHH-
T ss_pred CHHHHhhcCCCCHHHHHhCChhHHHHHHHcCCCCHHHHHHHHHHHHHHhHhcC
Confidence 5899999999999999999999999999999 899999999999999999985
No 25
>KOG1105 consensus Transcription elongation factor TFIIS/Cofactor of enhancer-binding protein Sp1 [Transcription]
Probab=98.75 E-value=1.1e-08 Score=116.95 Aligned_cols=60 Identities=42% Similarity=0.608 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHhcCCCCcHHhhhhcCCCcccc-cccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 000337 374 VEEFLLILLRALDKLPVNLNALQMCNIGKSVN-HLRTHKNVEIQKKARSLVDTWKKRVEAE 433 (1643)
Q Consensus 374 ~ee~lLeLLraLk~lPvTlelLksT~IGktVn-kLRKH~n~eI~kLAk~LVkkWKk~V~~e 433 (1643)
+.+.+|++|.+|+++|||+++|+.|+||+.|| .|++|.|++|.++|+.||+.||++|++.
T Consensus 21 n~~~~ld~l~~L~~~pvt~ell~~Tr~g~~vn~~~Kk~~n~ev~~~ak~Lik~Wkk~~~~~ 81 (296)
T KOG1105|consen 21 NVEAALDLLKRLKKIPVTLELLQETRTGMGVNEVLKKHKNEEVRSLAKKLIKSWKKLVDKS 81 (296)
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHhhHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 47899999999999999999999999999999 5567899999999999999999999875
No 26
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=98.70 E-value=1.9e-09 Score=126.09 Aligned_cols=127 Identities=23% Similarity=0.337 Sum_probs=102.3
Q ss_pred EEeeCCEEEEcCCCCCCCeEEEEEEEEecCCCcEEEEEEEEeccccccC-----C---cc-----------------c--
Q 000337 70 KISVGDCALFKPPQDSPPFIGIIRSLTAGKENKLTLSVNWLYRPAEVKL-----G---KG-----------------F-- 122 (1643)
Q Consensus 70 eYkVGDcVLVkpedd~pPYIArI~~IwedkdGev~VrVqWFYRPeET~l-----g---kg-----------------~-- 122 (1643)
.|+|||+|||......|+.|-+|+++.+..+|.+..+|-.|||..||.. . .+ .
T Consensus 5 ~y~vgd~vYf~~sss~PYliRrIEELnKTa~GnVeAkvVc~~RRRDIs~~L~~lAD~~ar~~~~y~a~~~a~~~~e~e~E 84 (693)
T KOG3554|consen 5 MYRVGDYVYFENSSSNPYLIRRIEELNKTANGNVEAKVVCYLRRRDISSHLLKLADKHARRFDNYAAPEAAPEATEAEIE 84 (693)
T ss_pred cceecceEEEecCCCChHHHHHHHHHhccccCCcceEEEEEEEccchHHHHHHHHHHHhhhcccccCcccCcccchhhhh
Confidence 7999999999987555555999999999889999999999999999841 0 01 0
Q ss_pred ---------------ccCCCCCeeEEcCCcCccCccccccccEEEecCCCccCC---CCCCeEEEEEEEeCCCcEeccCC
Q 000337 123 ---------------LLEAAPNEIFYSFHKDEIPAASLLHPCKVAFLPKGIELP---SGIGSFVCRKVYDITNKCLWWLT 184 (1643)
Q Consensus 123 ---------------~~~sDPnELFLSdh~DenPleSIlGKC~Vl~l~ey~eLp---~g~dtFFCRr~YD~~~KrF~~LP 184 (1643)
.|....+|||+|-..+..|+..|.|||.|..+.+.+.+. ...++||+..+||+..+.| |.
T Consensus 85 Ee~e~p~~vdlt~~qrhqLrhrElFlsRQ~EsLPAthIRGKCsV~LLnete~~~~YL~~eDtFfySLVyDP~~kTL--LA 162 (693)
T KOG3554|consen 85 EESECPAPVDLTEKQRHQLRHRELFLSRQSESLPATHIRGKCSVTLLNETESLQSYLEKEDTFFYSLVYDPNQKTL--LA 162 (693)
T ss_pred hhccCCCcCCCCHHHHHHHHHHHHHHhhhhccCchhhhccceeEEEecChHHHHhhccccceeEEEeeeccchhhh--hc
Confidence 112235899999999999999999999999887766544 3579999999999999976 66
Q ss_pred ccccchh------hhhHHHH
Q 000337 185 DQDYINE------EVDQLLY 198 (1643)
Q Consensus 185 DedyI~c------Ecdkwfh 198 (1643)
|++-|.. +++.|+.
T Consensus 163 DkGeIRVG~kYQA~i~e~l~ 182 (693)
T KOG3554|consen 163 DKGEIRVGEKYQADIPEWLE 182 (693)
T ss_pred cCcceeecccccccchHHHH
Confidence 7766663 7778876
No 27
>PLN02976 amine oxidase
Probab=97.09 E-value=0.0037 Score=84.28 Aligned_cols=105 Identities=23% Similarity=0.312 Sum_probs=84.6
Q ss_pred cccchhhhHHHHhccchhhHHHHHHHhchhhHHHHHHHHhhccCCCCCCCCCCCCChHHHHHHHHHHhcCCCCcHHhhhh
Q 000337 318 LVCRSLLAGVVAATDKFDCLNWFVQLRGLLVFDEWLQEVHKGKIGDAGSPRDGDKSVEEFLLILLRALDKLPVNLNALQM 397 (1643)
Q Consensus 318 L~~R~~l~~Vi~~T~~~d~L~~Fvq~~Gl~vL~eWLqe~~K~k~gd~~sp~~~dks~ee~lLeLLraLk~lPvTlelLks 397 (1643)
.+||.-|++-+..--...+-..-++..||.+||+|+-+.. +| .-..++..+|+.|-.++.++.+|+.
T Consensus 1256 ~~gr~~~~~~~~~~~~~~~~~~a~~~~gl~~l~~w~~~~~-~~------------~~~~l~~~~~~ll~~~~~d~~a~r~ 1322 (1713)
T PLN02976 1256 TAGRLHLAKELLNLPVETLKSFAGTKEGLATLNSWILDSM-GK------------DGTQLLRHCVRLLVLVSTDLLAVRL 1322 (1713)
T ss_pred cccHHHHHHHHHhCCHHHHHHHhcccchHHHHHHHHHHHh-cc------------cHHHHHHHHHHHHhhcchhHHHHHh
Confidence 5888666666644343344444477999999999998774 32 2357888889999999999999999
Q ss_pred cCCCccccc-ccCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 000337 398 CNIGKSVNH-LRTHKNVEIQKKARSLVDTWKKRVEAEMD 435 (1643)
Q Consensus 398 T~IGktVnk-LRKH~n~eI~kLAk~LVkkWKk~V~~e~~ 435 (1643)
..|||+|+. +.-|.+.+|+.+|+.|+..|.+++..++.
T Consensus 1323 sg~~~~~k~~~~~h~~~~~r~~a~~~~~~w~~~~~~~~~ 1361 (1713)
T PLN02976 1323 SGIGKTVKEKVCVHTSRDIRAIASQLVSVWLEVFRREKA 1361 (1713)
T ss_pred ccchHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999974 56899999999999999999999998884
No 28
>KOG1793 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.01 E-value=0.014 Score=69.85 Aligned_cols=122 Identities=25% Similarity=0.383 Sum_probs=86.4
Q ss_pred hhHHHHHHhhccccccc-ccccccc------hhhhHHHHhccchhhHHHHHHHhchhhHHHHHHHHhhccCCCCCCCCCC
Q 000337 298 DGVEKLVQLMVPERNDK-KIDLVCR------SLLAGVVAATDKFDCLNWFVQLRGLLVFDEWLQEVHKGKIGDAGSPRDG 370 (1643)
Q Consensus 298 e~V~klv~LM~~~~~~k-k~~L~~R------~~l~~Vi~~T~~~d~L~~Fvq~~Gl~vL~eWLqe~~K~k~gd~~sp~~~ 370 (1643)
+.|..|+..|...-++. -.+.-++ -+|-.|..--.++.+...||-.+=|.+|.+||.=+- |++-|.
T Consensus 159 ~~v~~l~~~m~~aa~~D~~~N~e~kPA~~Klk~Lp~v~~vL~k~~L~et~LDngvL~~lk~WLePLP-----D~SLPa-- 231 (417)
T KOG1793|consen 159 DEVSRLMERMEDAAEKDRELNREGKPATQKLKLLPLVVAVLSKKALQETFLDNGVLDSLKEWLEPLP-----DGSLPA-- 231 (417)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCchHHHHhccHHHHHHHhhhhHHHHHHhhhHHHHHHHHhccCC-----CCCCcc--
Confidence 67888888887543221 0111111 122233333346788899999999999999994333 333342
Q ss_pred CCChHHHHHHHHHHhcCCCCcH-HhhhhcCCCcccccccCCC--CHHHHHHHHHHHHHHHHHH
Q 000337 371 DKSVEEFLLILLRALDKLPVNL-NALQMCNIGKSVNHLRTHK--NVEIQKKARSLVDTWKKRV 430 (1643)
Q Consensus 371 dks~ee~lLeLLraLk~lPvTl-elLksT~IGktVnkLRKH~--n~eI~kLAk~LVkkWKk~V 430 (1643)
-.-=..||..|..|||-. ++|+...+|+.|=-|.||. ..+++.+|..||..|-.-|
T Consensus 232 ----l~Ir~~ll~iL~dlpi~~~E~Lk~SGlGkvVmflsks~ket~~nkrlA~kLI~eWsRpI 290 (417)
T KOG1793|consen 232 ----LNIRKSLLDILNDLPIDKREHLKESGLGKVVMFLSKSPKETKENKRLANKLINEWSRPI 290 (417)
T ss_pred ----hHHHHHHHHHHhcCCcchHHHHHhcCCCeEEEEEecCCccchHHHHHHHHHHHHhhccc
Confidence 233356788889999999 9999999999999999996 4589999999999997654
No 29
>KOG2821 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin A [Transcription]
Probab=94.57 E-value=0.01 Score=71.81 Aligned_cols=58 Identities=31% Similarity=0.406 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhcCCCCcHHhhhhcCCCcccccccCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 000337 375 EEFLLILLRALDKLPVNLNALQMCNIGKSVNHLRTHKNVEIQKKARSLVDTWKKRVEAEM 434 (1643)
Q Consensus 375 ee~lLeLLraLk~lPvTlelLksT~IGktVnkLRKH~n~eI~kLAk~LVkkWKk~V~~e~ 434 (1643)
...++..|..|-++|+++++|.+|.+|++|+.||||. .|..+|..|+..||+.|..+-
T Consensus 24 pkR~lk~I~~ls~lP~~~k~l~Et~~~k~l~~L~k~~--~~g~~~~Dl~~~WK~~v~~d~ 81 (433)
T KOG2821|consen 24 PKRLLKRIQKLSNLPHLFKHLLETGKGKTLNSLRKIS--HVGKLAFDLVALWKDLVLVDF 81 (433)
T ss_pred HHHHHHHHHHhccchHHHHHHHHhhhhHHHHHHHHhh--cccccccchHHHHHHhccccc
Confidence 5788999999999999999999999999999999998 689999999999999985433
No 30
>PF11467 LEDGF: Lens epithelium-derived growth factor (LEDGF) ; InterPro: IPR021567 LEDGF is a chromatin-associated protein that protects cells from stress-induced apoptosis. It is the binding partner of HIV-1 integrase in human cells. The integrase binding domain (IBD) of LEDGF is a compact right-handed bundle composed of five alpha-helices. The residues essential for the interaction with the integrase are present in the inter-helical loop regions of the bundle structure. ; PDB: 3F9K_K 3HPG_G 3U88_C 3HPH_H 2B4J_D 1Z9E_A.
Probab=92.34 E-value=0.11 Score=52.96 Aligned_cols=59 Identities=27% Similarity=0.218 Sum_probs=47.6
Q ss_pred ChHHHHHHHHHHhcCCCCcHHhhhh-cCCCcccccccCC-CCHHHHHHHHHHHHHHHHHHH
Q 000337 373 SVEEFLLILLRALDKLPVNLNALQM-CNIGKSVNHLRTH-KNVEIQKKARSLVDTWKKRVE 431 (1643)
Q Consensus 373 s~ee~lLeLLraLk~lPvTlelLks-T~IGktVnkLRKH-~n~eI~kLAk~LVkkWKk~V~ 431 (1643)
...+.||++|..|..|+||..+|+. +.+=-++++||++ .|..|++.|..|+.+.|.++.
T Consensus 20 ~Dv~kcL~~LdeL~~l~vT~~mL~kn~e~V~TlkklRrY~gn~~Ir~KA~~lYnkfK~~f~ 80 (106)
T PF11467_consen 20 PDVKKCLKALDELKSLQVTSLMLQKNPECVETLKKLRRYKGNQQIRKKATELYNKFKSLFL 80 (106)
T ss_dssp E-HHHHHHHHHHHHTS---HHHHTTTHHHHHHHHHHTT-TT-HHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHhCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhC
Confidence 4578999999999999999998866 4588899999998 589999999999999999995
No 31
>COG5139 Uncharacterized conserved protein [Function unknown]
Probab=86.77 E-value=0.69 Score=54.18 Aligned_cols=52 Identities=25% Similarity=0.528 Sum_probs=44.8
Q ss_pred HHHHHHhcCCCCcHHhhhhcCCCccccccc--CCCCHHHHHHHHHHHHHHHHHH
Q 000337 379 LILLRALDKLPVNLNALQMCNIGKSVNHLR--THKNVEIQKKARSLVDTWKKRV 430 (1643)
Q Consensus 379 LeLLraLk~lPvTlelLksT~IGktVnkLR--KH~n~eI~kLAk~LVkkWKk~V 430 (1643)
-.||..|+.|||-.++|++..||+.|==.. |....+|+.+|+.||..|-.-|
T Consensus 233 ksL~dvL~~lpI~tEHL~eSgvGrIV~FYtiskk~e~~v~r~A~~LV~eWtrpI 286 (397)
T COG5139 233 KSLLDVLKTLPIHTEHLVESGVGRIVYFYTISKKEEKEVRRSAKALVQEWTRPI 286 (397)
T ss_pred HHHHHHHhhCCchHHHhhhcCCceEEEEEecCCcccHHHHHHHHHHHHHhhccc
Confidence 456777888999999999999999998766 4457899999999999998766
No 32
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=70.94 E-value=3.5 Score=55.08 Aligned_cols=121 Identities=16% Similarity=0.184 Sum_probs=81.2
Q ss_pred ceeEEEECCEEEeeCCEEEEcCCCCC--------------------CCe---EEEEEEEEecCC-CcEEEEEEEEecccc
Q 000337 60 SVTFFSQDGRKISVGDCALFKPPQDS--------------------PPF---IGIIRSLTAGKE-NKLTLSVNWLYRPAE 115 (1643)
Q Consensus 60 yY~Sf~iDGeeYkVGDcVLVkpedd~--------------------pPY---IArI~~Iwedkd-Gev~VrVqWFYRPeE 115 (1643)
.|+++++++++|.+||-|+|.-+.+. .-| -|+|-.|+...+ ..+.+.|+.||-..|
T Consensus 442 iye~~~in~~~ys~g~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~kg~is~fy~~~~~~~~~~e~c~y~d~~d 521 (1164)
T PTZ00112 442 IYESIQINDVEYSIGDDVLIFCTGNGNTYNGKSGTKKNQNNKNIKENIYQLRKGKISSFYKNTNSNQVEAEVCIYYDQHD 521 (1164)
T ss_pred EEEEEEEcceeeccCCcEEEEEcCCCCccccccCccccccccchhhhhheecccccchhhhcCCCceeeEEEEEEEcccc
Confidence 58999999999999999987644210 112 588888887643 458999999998887
Q ss_pred cc----CC-----cc------cccCCCCCeeEEcCC--cCccCccccccccEEEecCC-Ccc---CCCCCCeEEEEEEEe
Q 000337 116 VK----LG-----KG------FLLEAAPNEIFYSFH--KDEIPAASLLHPCKVAFLPK-GIE---LPSGIGSFVCRKVYD 174 (1643)
Q Consensus 116 T~----lg-----kg------~~~~sDPnELFLSdh--~DenPleSIlGKC~Vl~l~e-y~e---Lp~g~dtFFCRr~YD 174 (1643)
-. +. ++ .+++.+.++.||-.. +-.+.+.-|..|+.|..... |.+ +..|.+-|.|-+..-
T Consensus 522 ~~~i~~~~~~~~~rr~~~~f~~~~d~~~~~~~llgni~f~~~~~~~i~kki~~~ne~~~~~~d~~~~~g~~kflc~~~~k 601 (1164)
T PTZ00112 522 AQYIKELEEKQKSRRCKADFEVFLDDDTKNFYLLGNIHFKILDAKMILKKIYVYNEKELYDEDKTAKQGKDKFLCTHYLK 601 (1164)
T ss_pred HHHHHHHHHHHHhhhhhhhhhHhcccccceeEEecceeEEEechHhhhhhheeecchhhcccchhhhcccchhhhhHhhh
Confidence 52 11 11 134455677776653 44566777889998865543 222 235688999987665
Q ss_pred CCCcEe
Q 000337 175 ITNKCL 180 (1643)
Q Consensus 175 ~~~KrF 180 (1643)
....++
T Consensus 602 ~~~~~~ 607 (1164)
T PTZ00112 602 EREERI 607 (1164)
T ss_pred cchhhe
Confidence 555444
No 33
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=67.41 E-value=0.79 Score=55.12 Aligned_cols=92 Identities=14% Similarity=0.071 Sum_probs=75.5
Q ss_pred eEEEECCEEEeeCCEEEEcCCC-CCCCeEEEEEEEEecCCCcEEEEEEEEeccccccCC-cccccCCCCCeeEEcCCcCc
Q 000337 62 TFFSQDGRKISVGDCALFKPPQ-DSPPFIGIIRSLTAGKENKLTLSVNWLYRPAEVKLG-KGFLLEAAPNEIFYSFHKDE 139 (1643)
Q Consensus 62 ~Sf~iDGeeYkVGDcVLVkped-d~pPYIArI~~IwedkdGev~VrVqWFYRPeET~lg-kg~~~~sDPnELFLSdh~De 139 (1643)
..+.+.+....+|+++++.+.. ...|.++.+..+|.+.+...+.-++||||+.++... ...+.. +++.+....+.
T Consensus 268 ~~~~i~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 344 (371)
T COG5076 268 ESVLITNSQAHVGAWPFLRPVSDEEVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFD---NCVMYNGEVTD 344 (371)
T ss_pred hhhcccccccccccccccccCCcccccchhhhhhcccccccchhhhhcccCCCccccccccchhhh---cccccchhhhh
Confidence 5677788899999999999864 578899999999998888778899999999977543 333444 88888888999
Q ss_pred cCccccccccEEEecCC
Q 000337 140 IPAASLLHPCKVAFLPK 156 (1643)
Q Consensus 140 nPleSIlGKC~Vl~l~e 156 (1643)
+.+..+.+.|.|.....
T Consensus 345 ~~~~~~~~~~~~~~~~~ 361 (371)
T COG5076 345 YYKNANVLEDFVIKKTR 361 (371)
T ss_pred hhhhccchhhhHhhhhh
Confidence 99999999999976543
No 34
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.01 E-value=4.5e+02 Score=36.21 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=14.0
Q ss_pred CCcCCCCcccccccccCCCCCCCCCC
Q 000337 1367 GGLLNGEVNVRRDFDLNDGPVLDDCS 1392 (1643)
Q Consensus 1367 ~~~ss~~~~~~RdFDLNdgP~~d~~~ 1392 (1643)
+++|+.--.++-|--+|--|.+....
T Consensus 21 ~g~~~~~a~~~~~~~~~p~p~~~~~~ 46 (1007)
T KOG1984|consen 21 GGSSNSLAQAMPNGSINPPPPMQGTG 46 (1007)
T ss_pred CCCCchhhhhccCCccCCCCCCCCCC
Confidence 44455444556666677545554444
No 35
>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2, HPR3, HPR4, respectively) and lens epithelium-derived growth factor, LEDGF. Members of the HDGF family have been linked to human diseases, and HDGF is a prognostic factor in several types of cancer. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=42.41 E-value=30 Score=34.11 Aligned_cols=44 Identities=14% Similarity=0.139 Sum_probs=34.8
Q ss_pred EEeeCCEEEEcCCCCCCCeEEEEEEEEecCCCcEEEEEEEEeccc
Q 000337 70 KISVGDCALFKPPQDSPPFIGIIRSLTAGKENKLTLSVNWLYRPA 114 (1643)
Q Consensus 70 eYkVGDcVLVkpedd~pPYIArI~~IwedkdGev~VrVqWFYRPe 114 (1643)
.|++||.|+-+- ..-++|-|+|.+.-........+.|+||-..+
T Consensus 2 ~f~~GdlVwaK~-kGyp~WPa~I~~~~~~~~~~~~~~V~FfGt~~ 45 (83)
T cd05834 2 QFKAGDLVFAKV-KGYPAWPARVDEPEDWKPPGKKYPVYFFGTHE 45 (83)
T ss_pred CCCCCCEEEEec-CCCCCCCEEEecccccCCCCCEEEEEEeCCCC
Confidence 478999999987 35789999999987644445689999998543
No 36
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=38.04 E-value=38 Score=31.31 Aligned_cols=41 Identities=10% Similarity=0.127 Sum_probs=25.3
Q ss_pred EeeCCEEEEcCCCCCCCeEEEEEEEEecCCCcEEEEEEEEeccc
Q 000337 71 ISVGDCALFKPPQDSPPFIGIIRSLTAGKENKLTLSVNWLYRPA 114 (1643)
Q Consensus 71 YkVGDcVLVkpedd~pPYIArI~~IwedkdGev~VrVqWFYRPe 114 (1643)
|++||.|.++++.+ ..=|..|..- ......++.++||---.
T Consensus 1 f~~GDvV~LKSGGp-~MTV~~v~~~--~~~~~~~v~C~WFd~~~ 41 (53)
T PF09926_consen 1 FKIGDVVQLKSGGP-RMTVTEVGPN--AGASGGWVECQWFDGHG 41 (53)
T ss_pred CCCCCEEEEccCCC-CeEEEEcccc--ccCCCCeEEEEeCCCCC
Confidence 68999999998652 1223333222 12234689999996433
No 37
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=36.08 E-value=3.3e+02 Score=38.49 Aligned_cols=13 Identities=23% Similarity=0.107 Sum_probs=7.5
Q ss_pred ccccccccccccc
Q 000337 1108 VSTALRAQETGQL 1120 (1643)
Q Consensus 1108 ~~p~~~~~e~~~~ 1120 (1643)
-+|-++..|.+..
T Consensus 1175 ispwlLrlelDr~ 1187 (1605)
T KOG0260|consen 1175 ISPWLLRLELDRA 1187 (1605)
T ss_pred cChHHHHhhhhhh
Confidence 3466666666554
No 38
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase V. It is highly expressed in several types of human cancers. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=31.50 E-value=60 Score=32.27 Aligned_cols=39 Identities=21% Similarity=0.226 Sum_probs=31.4
Q ss_pred EeeCCEEEEcCCCCCCCeEEEEEEEEecCCCcEEEEEEEEecc
Q 000337 71 ISVGDCALFKPPQDSPPFIGIIRSLTAGKENKLTLSVNWLYRP 113 (1643)
Q Consensus 71 YkVGDcVLVkpedd~pPYIArI~~IwedkdGev~VrVqWFYRP 113 (1643)
|.+||.|.-+-. .-|+|-|+|.++... ..+++|.||=-.
T Consensus 1 f~~gdlVWaK~~-g~P~WPa~I~~~~~~---~~k~~V~FfG~~ 39 (80)
T cd06080 1 FEKNDLVWAKIQ-GYPWWPAVIKSISRK---KQKARVNFIGDN 39 (80)
T ss_pred CCCCCEEEEeCC-CCCCCCEEEeeecCC---CCEEEEEEeCCC
Confidence 578999998863 468999999998653 568999999666
No 39
>cd05835 Dnmt3b_related The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis. In tumorigenesis, DNA methylation by Dnmt3b is known to play a role in the inactivation of tumor suppressor genes. In addition, a point mutation in the PWWP domain of Dnmt3b has been identified in patients with ICF syndrome (immunodeficiency, centromeric instability, and facial anomalies), a rare autosomal recessive disorder characterized by hypomethylation of classical satellite DNA. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=30.39 E-value=53 Score=32.54 Aligned_cols=41 Identities=24% Similarity=0.190 Sum_probs=31.3
Q ss_pred EeeCCEEEEcCCCCCCCeEEEEEEEEecC---CCcEEEEEEEEec
Q 000337 71 ISVGDCALFKPPQDSPPFIGIIRSLTAGK---ENKLTLSVNWLYR 112 (1643)
Q Consensus 71 YkVGDcVLVkpedd~pPYIArI~~Iwedk---dGev~VrVqWFYR 112 (1643)
|.+||.|..+-. .-+.|-|+|....... ....++.|+||--
T Consensus 1 f~vGDlVWaK~k-g~pwWP~~V~~~~~~~~~~~~~~~~~V~fFGs 44 (87)
T cd05835 1 FNVGDLVWGKIK-GFPWWPGRVVSITVTSKRPPVVGMRWVTWFGS 44 (87)
T ss_pred CCCCCEEEEecC-CCCCCCeEEechhhcccccCCCCeEEEEEeCC
Confidence 578999999973 4688999999986543 1235799999963
No 40
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=28.30 E-value=26 Score=42.68 Aligned_cols=78 Identities=5% Similarity=-0.235 Sum_probs=59.2
Q ss_pred CeeEEcCCcCccCccccccccEEEecCCCccCCCCCCeEEEEEEEeCCCcE------------e-ccCCccccchh-hhh
Q 000337 129 NEIFYSFHKDEIPAASLLHPCKVAFLPKGIELPSGIGSFVCRKVYDITNKC------------L-WWLTDQDYINE-EVD 194 (1643)
Q Consensus 129 nELFLSdh~DenPleSIlGKC~Vl~l~ey~eLp~g~dtFFCRr~YD~~~Kr------------F-~~LPDedyI~c-Ecd 194 (1643)
.+.+++.|+.-.....+.+++.......+...+....+.++++.|...... | ...++..|+.| .|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~~~~~~~~~~~~p~~~~~~cd~C~ 82 (345)
T KOG1632|consen 3 KIPKTSKTFSKTESDRRAPIAQKTTKPPKEPVPIERPVPDVFRGRKGRRGGLLKALTQRYCKCYKPCDPDDLMEQCDLCE 82 (345)
T ss_pred CcccccceecccccccccccccccccCCcCCCCCCCCCcccccccccccccccHhhhhchhhcccccCchhhhhcccccc
Confidence 467788888888899999999998888777766666777777777664432 2 23455588999 999
Q ss_pred HHHHhhh--ccccc
Q 000337 195 QLLYKTH--IEMHA 206 (1643)
Q Consensus 195 kwfh~tC--l~m~A 206 (1643)
.|||..| +++..
T Consensus 83 ~~~~~ec~~v~~~~ 96 (345)
T KOG1632|consen 83 DWYHGECWEVGTAE 96 (345)
T ss_pred ccccccccccCchh
Confidence 9999999 66653
No 41
>PHA02763 hypothetical protein; Provisional
Probab=28.22 E-value=48 Score=33.60 Aligned_cols=44 Identities=23% Similarity=0.422 Sum_probs=31.7
Q ss_pred cccccchhhhHHHHh-ccchhhHHHHHHHhchhhHHHHHHHHhhc
Q 000337 316 IDLVCRSLLAGVVAA-TDKFDCLNWFVQLRGLLVFDEWLQEVHKG 359 (1643)
Q Consensus 316 ~~L~~R~~l~~Vi~~-T~~~d~L~~Fvq~~Gl~vL~eWLqe~~K~ 359 (1643)
+.+-.|.-..-||+- -=..+||+++|+..|..-..+||.|+..-
T Consensus 36 l~v~dr~f~gKvIa~ap~t~~~LsKYv~~SGFe~VEeWl~eArrL 80 (102)
T PHA02763 36 LKVGDKRFPGKVIAKAPVTEYCLSKYVKFSGFENVEEWLNEARRL 80 (102)
T ss_pred EEecCccccceEEEecCchHHHHHHHhhhcchhhHHHHHHHHHHH
Confidence 344445444444442 23469999999999999999999988765
No 42
>PF10383 Clr2: Transcription-silencing protein Clr2 ; InterPro: IPR018839 Clr2 (cryptic loci regulator) is a chromatin silencing protein, one of a quartet of proteins forming the core of SHREC, a multienzyme effector complex that mediates hetero-chromatic transcriptional gene silencing in fission yeast []. Clr2 does not have any obvious well-conserved domains but, along with the other core proteins, binds to the histone deacetylase Clr3, and on its own might also have a role in chromatin organisation at the cnt domain, the site of kinetochore assembly.
Probab=28.17 E-value=2e+02 Score=31.02 Aligned_cols=40 Identities=18% Similarity=0.092 Sum_probs=31.2
Q ss_pred CceeEEEECCEEEeeCCEEEEcCCC-----------CCCCeEEEEEEEEec
Q 000337 59 NSVTFFSQDGRKISVGDCALFKPPQ-----------DSPPFIGIIRSLTAG 98 (1643)
Q Consensus 59 kyY~Sf~iDGeeYkVGDcVLVkped-----------d~pPYIArI~~Iwed 98 (1643)
.||..+-+.-+.|.|||+|-|++.. ....-|-.|.+|+..
T Consensus 1 i~y~GiflGAE~I~vGD~VRl~~~~~~~~~~~~~~~~~~tdvMvI~~I~~~ 51 (139)
T PF10383_consen 1 IYYRGIFLGAEMIWVGDAVRLKPLNASPSPNQSDGNPDVTDVMVIDEIQLR 51 (139)
T ss_pred CeECeEEEeeEEEEeCCEEEECccCCCcccccccCCCCceeEEEEeEEEEe
Confidence 3899999999999999999996532 233468888888764
No 43
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=26.56 E-value=1e+02 Score=28.05 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=26.5
Q ss_pred EeeCCEEEEcCCCCCCCeEEEEEEEEecCCCcEEEEEEE
Q 000337 71 ISVGDCALFKPPQDSPPFIGIIRSLTAGKENKLTLSVNW 109 (1643)
Q Consensus 71 YkVGDcVLVkpedd~pPYIArI~~IwedkdGev~VrVqW 109 (1643)
|.||+.|++.- .+...|-|+|+++... .+...+.|++
T Consensus 1 ~~vG~~v~~~~-~~~~~y~A~I~~~r~~-~~~~~YyVHY 37 (55)
T PF11717_consen 1 FEVGEKVLCKY-KDGQWYEAKILDIREK-NGEPEYYVHY 37 (55)
T ss_dssp --TTEEEEEEE-TTTEEEEEEEEEEEEC-TTCEEEEEEE
T ss_pred CCcCCEEEEEE-CCCcEEEEEEEEEEec-CCCEEEEEEc
Confidence 57899999986 3457899999999984 4445555655
No 44
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=26.23 E-value=1.1e+02 Score=32.74 Aligned_cols=93 Identities=23% Similarity=0.227 Sum_probs=52.6
Q ss_pred hHHHHhccchhhHHHHHHHhchhhHHHHHHHHhhccCCCCCCCCCCCCChHHHHHHHHHHhcCCCCcHHhhhhcC--CCc
Q 000337 325 AGVVAATDKFDCLNWFVQLRGLLVFDEWLQEVHKGKIGDAGSPRDGDKSVEEFLLILLRALDKLPVNLNALQMCN--IGK 402 (1643)
Q Consensus 325 ~~Vi~~T~~~d~L~~Fvq~~Gl~vL~eWLqe~~K~k~gd~~sp~~~dks~ee~lLeLLraLk~lPvTlelLksT~--IGk 402 (1643)
+.|...|..-+=+..|+..+|+.+|-++|...++..... +.+...+..++..|++|-+...-++.+-.+. +..
T Consensus 88 L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~-----~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~ 162 (187)
T PF06371_consen 88 LRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKS-----EEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNL 162 (187)
T ss_dssp HHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTC-----TTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHH
T ss_pred HHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhc-----chhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHH
Confidence 445556777788999999999999999998888764222 1221223345555555555544445433322 222
Q ss_pred ccccccCCCCHHHHHHHHHHH
Q 000337 403 SVNHLRTHKNVEIQKKARSLV 423 (1643)
Q Consensus 403 tVnkLRKH~n~eI~kLAk~LV 423 (1643)
.+.-|- ..+..++.+|-+|+
T Consensus 163 i~~~L~-s~~~~~r~~~leiL 182 (187)
T PF06371_consen 163 IALSLD-SPNIKTRKLALEIL 182 (187)
T ss_dssp HHHT---TTSHHHHHHHHHHH
T ss_pred HHHHHC-CCCHHHHHHHHHHH
Confidence 222222 34567777777665
No 45
>cd05162 PWWP The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. The function of the PWWP domain is still not known precisely; however, based on the fact that other regions of PWWP-domain proteins are responsible for nuclear localization and DNA-binding, is likely that the PWWP domain acts as a site for protein-protein binding interactions, influencing chromatin remodeling and thereby regulating transcriptional processes. Some PWWP-domain proteins have been linked to cancer or other diseases; some are known to function as growth factors.
Probab=25.56 E-value=79 Score=30.73 Aligned_cols=40 Identities=13% Similarity=0.084 Sum_probs=30.9
Q ss_pred EeeCCEEEEcCCCCCCCeEEEEEEEEecC------CCcEEEEEEEEe
Q 000337 71 ISVGDCALFKPPQDSPPFIGIIRSLTAGK------ENKLTLSVNWLY 111 (1643)
Q Consensus 71 YkVGDcVLVkpedd~pPYIArI~~Iwedk------dGev~VrVqWFY 111 (1643)
|++||.|..+-. .-+.|-|+|....... .....+.|+||-
T Consensus 1 f~~GdlVwaK~~-g~pwWPa~V~~~~~~~~~~~~~~~~~~~~V~Ffg 46 (87)
T cd05162 1 FRPGDLVWAKMK-GYPWWPALVVDPPKDSKKAKKKAKEGKVLVLFFG 46 (87)
T ss_pred CCCCCEEEEeCC-CCCCCCEEEccccccchhhhccCCCCEEEEEEeC
Confidence 578999999974 4688999999987642 223578899886
No 46
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG2133 consensus Transcriptional corepressor Atrophin-1/DRPLA [General function prediction only]
Probab=22.41 E-value=55 Score=44.29 Aligned_cols=116 Identities=14% Similarity=0.104 Sum_probs=77.5
Q ss_pred EECCEEEeeCCEEEEcCCCCCCCeEEEEEEEEecCC-CcEEEEEEEEeccccccC-C---ccc------cc------CCC
Q 000337 65 SQDGRKISVGDCALFKPPQDSPPFIGIIRSLTAGKE-NKLTLSVNWLYRPAEVKL-G---KGF------LL------EAA 127 (1643)
Q Consensus 65 ~iDGeeYkVGDcVLVkpedd~pPYIArI~~Iwedkd-Gev~VrVqWFYRPeET~l-g---kg~------~~------~sD 127 (1643)
..+++.|.++|-+++......++.|+.|-.+...++ ..+.+..-.|.|.+||.. + .+. .. ...
T Consensus 140 s~~e~~y~~~~~l~~~v~~~~p~lia~~~~~~~~Kr~~~~~~k~s~~~r~~d~Pet~y~~~m~pe~Ar~e~~P~~~pq~~ 219 (1229)
T KOG2133|consen 140 SHDETLYDLRDSLFVEVSQPEPYLIAAICGFKYTKRDDRQVVKLSFYFRADDIPETGYLNLMKPERARLEINPHLCPQPL 219 (1229)
T ss_pred cccchhhhhhhhhhhhhccCCccccccccCccccccccccccccccccccccCcccccccccCchhhhhccCCccCCCcc
Confidence 456678999999999887665555777655544443 456778889999999972 1 110 00 124
Q ss_pred CCeeEEcCCc-CccCccccccccEEEecCCCcc-----CC--CCCCeEEEEEEEeCCCcEe
Q 000337 128 PNEIFYSFHK-DEIPAASLLHPCKVAFLPKGIE-----LP--SGIGSFVCRKVYDITNKCL 180 (1643)
Q Consensus 128 PnELFLSdh~-DenPleSIlGKC~Vl~l~ey~e-----Lp--~g~dtFFCRr~YD~~~KrF 180 (1643)
.+|||.+.-. -.-|..|..+||.+.+..++.- .+ .+.++||.-..|....+..
T Consensus 220 sq~l~~s~l~~i~qppscp~gk~~~~~skd~~h~~~~n~p~~ld~~i~fk~agglpps~k~ 280 (1229)
T KOG2133|consen 220 SQELFNSELQGITQPPSCPRGKGIAEYSKDVRHGGNTNAPFSLDNDIFFKCAGGLPPSTKP 280 (1229)
T ss_pred hhhhhcccccCCCCCCcCCCCCceEEeecccccCCccCCCCcccceeeeecccCCCCCCCC
Confidence 6788888776 3578899999999985543221 11 3467777778887776653
No 48
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=21.99 E-value=22 Score=41.89 Aligned_cols=20 Identities=10% Similarity=0.089 Sum_probs=17.3
Q ss_pred ccchh---hhh-HHHHhhhccccc
Q 000337 187 DYINE---EVD-QLLYKTHIEMHA 206 (1643)
Q Consensus 187 dyI~c---Ecd-kwfh~tCl~m~A 206 (1643)
.||.| .|+ .|||.+|++|.+
T Consensus 231 ~Mi~CDn~~C~~eWFH~~CVGL~~ 254 (274)
T KOG1973|consen 231 KMIGCDNPGCPIEWFHFTCVGLKT 254 (274)
T ss_pred cccccCCCCCCcceEEEecccccc
Confidence 47888 799 999999999984
No 49
>PRK10708 hypothetical protein; Provisional
Probab=21.29 E-value=1.9e+02 Score=27.65 Aligned_cols=42 Identities=21% Similarity=0.334 Sum_probs=30.9
Q ss_pred eeCCEEEEcCCCCCCCeEEEEEEEEecCCCcEEE-------EEEEEeccc
Q 000337 72 SVGDCALFKPPQDSPPFIGIIRSLTAGKENKLTL-------SVNWLYRPA 114 (1643)
Q Consensus 72 kVGDcVLVkpedd~pPYIArI~~IwedkdGev~V-------rVqWFYRPe 114 (1643)
+|+|.|.|+.+ ..+.-.|.|..|..-.+|.+++ ...||+.-.
T Consensus 2 kvnD~VtVKTD-G~~rR~G~iLavE~F~EG~MyLvaL~dYP~GiWFFNE~ 50 (62)
T PRK10708 2 KVNDRVTVKTD-GGPRRPGVVLAVEEFSEGTMYLVSLEDYPLGIWFFNEA 50 (62)
T ss_pred ccccEEEEecC-CCccccceEEEEeeccCcEEEEEEcCcCCCceEEEecc
Confidence 68999999985 4566789999987766776654 346877544
No 50
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=21.20 E-value=85 Score=32.26 Aligned_cols=52 Identities=23% Similarity=0.277 Sum_probs=44.2
Q ss_pred ChHHHHHHHHHHhcCCCCcHHhhhhcCCCcccccccCCCCHHHHHHHHHHHH
Q 000337 373 SVEEFLLILLRALDKLPVNLNALQMCNIGKSVNHLRTHKNVEIQKKARSLVD 424 (1643)
Q Consensus 373 s~ee~lLeLLraLk~lPvTlelLksT~IGktVnkLRKH~n~eI~kLAk~LVk 424 (1643)
+..+.+|+||..|-+.|-...+|+.-..=....+||++-++..+...-.|++
T Consensus 45 ~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il~ 96 (98)
T PF14726_consen 45 PMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEILD 96 (98)
T ss_pred ccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 3578999999999999999999998887777999999988877777766654
No 51
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=20.28 E-value=1.3e+02 Score=29.91 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=23.0
Q ss_pred EEeeCCEEEEcCCC------CCCCeEEEEEEEEec
Q 000337 70 KISVGDCALFKPPQ------DSPPFIGIIRSLTAG 98 (1643)
Q Consensus 70 eYkVGDcVLVkped------d~pPYIArI~~Iwed 98 (1643)
-++.||+|+|+.+. +..-|+|.|+.+...
T Consensus 5 ~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~Vi~~~gg 39 (75)
T PF11302_consen 5 SVKPGDTVIVQDEQEVGQKQDKDWWMGQVIHCEGG 39 (75)
T ss_pred ccCCCCEEEEecCccccccCCCCcEEEEEEEEecc
Confidence 36899999999865 245689999998764
Done!