Query 000337
Match_columns 1643
No_of_seqs 289 out of 884
Neff 3.7
Searched_HMMs 29240
Date Tue Mar 26 15:58:26 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000337.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_117-121//hhsearch_pdb/000337hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3swr_A DNA (cytosine-5)-methyl 1.0 1 1 244.9 12.8 167 17-208 125-305 (1002)
2 3av4_A DNA (cytosine-5)-methyl 1.0 1 1 243.7 12.8 166 15-205 434-614 (1330)
3 1w4s_A Polybromo, polybromo 1 1.0 1 1 224.2 8.6 135 37-186 5-145 (174)
4 4ft4_B DNA (cytosine-5)-methyl 1.0 1 1 187.2 9.2 130 60-189 47-186 (784)
5 3swr_A DNA (cytosine-5)-methyl 1.0 1 1 186.7 14.9 130 57-186 321-504 (1002)
6 3av4_A DNA (cytosine-5)-methyl 1.0 1 1 178.9 12.0 129 58-186 634-815 (1330)
7 4dov_A ORC1, origin recognitio 1.0 1 1 174.0 15.9 125 59-185 22-162 (163)
8 2fl7_A Regulatory protein SIR3 1.0 1 1 116.9 8.0 120 66-185 48-192 (232)
9 1m4z_A Origin recognition comp 1.0 1 1 115.9 4.9 121 66-186 48-193 (238)
10 1wjt_A Transcription elongatio 1.0 1 1 113.9 1.8 61 375-435 30-91 (103)
No 1
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=1.00 E-value=1 Score=244.94 Aligned_cols=167 Identities=15% Similarity=0.246 Sum_probs=130.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEECCEEEECCCC-CCCCEEEEEEEE
Q ss_conf 0113755641138975200001113699999999987788887246899989899519989992899-999938999999
Q 000337 17 RKREGRRRHMWTVPPRDSAILASVADGGSASPSSSSSLSSSPNSVTFFSQDGRKISVGDCALFKPPQ-DSPPFIGIIRSL 95 (1643)
Q Consensus 17 ~kk~~k~k~~W~~~~~~~~Ig~s~~~~gk~~~~~~~~~~~~~k~YqSf~iDGeeYkVGDcVLVkped-d~pPYIARI~~I 95 (1643)
+|++.+..+.| +|++++..+.. .+|+++.++|.+|+|||||||.+++ +.+||||+|++|
T Consensus 125 ~k~~~~~~~~W--------~G~p~k~~~~~------------~~Y~s~~v~g~~i~VGD~V~v~~~d~~~ppyIarIe~m 184 (1002)
T 3swr_A 125 KKKQNKNRISW--------VGEAVKTDGKK------------SYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTAL 184 (1002)
T ss_dssp BCCCCCSCEEE--------ESCCCCCBTTE------------EECSEEEETTEEEETTCEEEECBSSTTSCCEEEEEEEE
T ss_pred CCCCCCCCCCC--------CCCCCCCCCCC------------EEEEEEEECCEEEECCCEEEEECCCCCCCCEEEEEEEE
T ss_conf 32244556543--------67633466674------------31038999998996499899966888888668999877
Q ss_pred EECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEECCC---------CC-CCC---C
Q ss_conf 7237983899999995354456875554578988259729847558651013319983699---------85-588---9
Q 000337 96 TAGKENKLTLSVNWLYRPAEVKLGKGFLLEAAPNEIFYSFHKDEIPAASLLHPCKVAFLPK---------GI-ELP---S 162 (1643)
Q Consensus 96 wedkdGev~VrVqWFYRPEET~lGkr~~l~sDpnELFLSdh~DeIpleSIiGKC~Vlsl~e---------y~-eLp---~ 162 (1643)
|++.+|.+||||+|||||+||.+++. .+++|||+|+|||++++++|.+||+|+++.. .. +.+ .
T Consensus 185 ~ed~~g~k~~~v~Wf~rp~ET~lg~~----~~~~ElFlsd~cd~~~l~~I~gkc~V~~~~~~~~w~~~~~~~~~~~~~~~ 260 (1002)
T 3swr_A 185 WEDSSNGQMFHAHWFCAGTDTVLGAT----SDPLELFLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMDPESLLEGD 260 (1002)
T ss_dssp EEETTTEEEEEEEEEEEGGGSTTGGG----SCTTEEEEEEEEEEEEGGGEEEEECEEECCCCTTGGGCTTCCCCCSCCCC
T ss_pred EECCCCCEEEEEEEEECCHHCCCCCC----CCCCCEEEECCCCCCCHHHHCEEEEEEECCCCCCHHHHCCCCCCCCCCCC
T ss_conf 64489976999999866101014667----89984686465457758893506599975677543442266644445567
Q ss_pred CCCEEEEEEEEECCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 8872899998947996851479522001025587774200123345
Q 000337 163 GIGSFVCRKVYDITNKCLWWLTDQDYINEEVDQLLYKTHIEMHATV 208 (1643)
Q Consensus 163 g~dtFFCR~~YD~~tKrF~~LPDedyI~cEcdklfhktCl~l~A~~ 208 (1643)
+.++|||++.||+.+++|..+|.+.+.. ....-||..|..+....
T Consensus 261 ~~~~ffc~~~Y~~~~~~F~~lp~~~~~~-~~~~~~c~~c~~~e~~~ 305 (1002)
T 3swr_A 261 DGKTYFYQLWYDQDYARFESPPKTQPTE-DNKFKFCVSCARLAEMR 305 (1002)
T ss_dssp CCTSEEEEEEEETTTTEEECCCCCCCCT-TCTTTCCHHHHHHHHHH
T ss_pred CCCEEEEEEEECCCCCCCCCCCHHHCCC-CCCCCCCCCCCCCHHHH
T ss_conf 8986999989888877224887012143-46887685221124566
No 2
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=1.00 E-value=1 Score=243.74 Aligned_cols=166 Identities=16% Similarity=0.276 Sum_probs=129.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEECCEEEECCCC-CCCCEEEEEE
Q ss_conf 310113755641138975200001113699999999987788887246899989899519989992899-9999389999
Q 000337 15 GDRKREGRRRHMWTVPPRDSAILASVADGGSASPSSSSSLSSSPNSVTFFSQDGRKISVGDCALFKPPQ-DSPPFIGIIR 93 (1643)
Q Consensus 15 g~~kk~~k~k~~W~~~~~~~~Ig~s~~~~gk~~~~~~~~~~~~~k~YqSf~iDGeeYkVGDcVLVkped-d~pPYIARI~ 93 (1643)
++++|+.+.++.| +|++++..+.. + ||+++.++|.+|+|||||||.+++ +.++|||+|+
T Consensus 434 ~~~~~~~~~~i~W--------~G~p~k~~~~~---~---------~Y~~~~v~g~~~~vGD~V~v~~~d~~~p~yiarIe 493 (1330)
T 3av4_A 434 GKKKKQNKDRISW--------LGQPMKIEENR---T---------YYQKVSIDEEMLEVGDCVSVIPDDSSKPLYLARVT 493 (1330)
T ss_dssp SCBCCCCCSCEEE--------ESSCSCCC--C---E---------EECSEEEESSEEETTCEEEECBCCSSCCCEEEEEE
T ss_pred HHHHHCCCCCCEE--------CCCCEECCCCC---E---------EEEEEEECCEEEECCCEEEEECCCCCCCCEEEEEE
T ss_conf 3421034677357--------06866346872---5---------64589999999965998999579999887888883
Q ss_pred EEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEECCC---CCCC---------C
Q ss_conf 997237983899999995354456875554578988259729847558651013319983699---8558---------8
Q 000337 94 SLTAGKENKLTLSVNWLYRPAEVKLGKGFLLEAAPNEIFYSFHKDEIPAASLLHPCKVAFLPK---GIEL---------P 161 (1643)
Q Consensus 94 ~IwedkdGev~VrVqWFYRPEET~lGkr~~l~sDpnELFLSdh~DeIpleSIiGKC~Vlsl~e---y~eL---------p 161 (1643)
+||++.+|.+||+|+|||||+||.+++ ..+++|||+|+|||++++++|.+||+|+++.. |... .
T Consensus 494 ~iwe~~dg~~~~~~~WfyRp~ETvlg~----~~~~rElFlS~~~d~~~l~~I~gKC~V~~~~~~~~~~~~~~~~~~~~~~ 569 (1330)
T 3av4_A 494 ALWEDKNGQMMFHAHWFCAGTDTVLGA----TSDPLELFLVGECENMQLSYIHSKVKVIYKAPSENWAMEGGTDPETTLP 569 (1330)
T ss_dssp EEEEETTCCEEEEEEEEEEGGGSTTGG----GSCTTEEEEEEEEEEEEGGGEEEEECEEECCCCTTSTTCCC--------
T ss_pred EEEECCCCCEEEEEEEEECHHHCCCCC----CCCCCEEEEECCCCCCCHHHHCCEEEEEEECCCHHHHHHCCCCCCCCCC
T ss_conf 621159997799999987667702553----4588747875550567488824355999815612234414667310112
Q ss_pred --CCCCEEEEEEEEECCCCEECCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf --98872899998947996851479522001025587774200123
Q 000337 162 --SGIGSFVCRKVYDITNKCLWWLTDQDYINEEVDQLLYKTHIEMH 205 (1643)
Q Consensus 162 --~g~dtFFCR~~YD~~tKrF~~LPDedyI~cEcdklfhktCl~l~ 205 (1643)
...++|||++.||+..++|+++|..... .....-||..|.++.
T Consensus 570 ~~~~~~~F~C~~~Yd~~~~~F~~lp~~~~~-~~~~~~~C~sC~~~e 614 (1330)
T 3av4_A 570 GAEDGKTYFFQLWYNQEYARFESPPKTQPT-EDNKHKFCLSCIRLA 614 (1330)
T ss_dssp -----CCEEEEEEEETTTTEEECCCCCCCC-GGGSSSCCHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCCCCCCCCCCCC-CCCCCCCCCHHHHHH
T ss_conf 225688369986987755735786767766-565766462555556
No 3
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=1.00 E-value=1 Score=224.22 Aligned_cols=135 Identities=21% Similarity=0.260 Sum_probs=116.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEECCEEEECCCC-CCCCEEEEEEEEEECCCCCEEEEEEEEECCCC
Q ss_conf 01113699999999987788887246899989899519989992899-99993899999972379838999999953544
Q 000337 37 LASVADGGSASPSSSSSLSSSPNSVTFFSQDGRKISVGDCALFKPPQ-DSPPFIGIIRSLTAGKENKLTLSVNWLYRPAE 115 (1643)
Q Consensus 37 g~s~~~~gk~~~~~~~~~~~~~k~YqSf~iDGeeYkVGDcVLVkped-d~pPYIARI~~IwedkdGev~VrVqWFYRPEE 115 (1643)
|++.+.+.++ .||++|.++|.+|+|||||||.+++ ..+||||+|++||++.+|.++++|+|||||+|
T Consensus 5 g~~~~~~~~r------------~~y~~~~~~g~~~~vGD~V~v~~~~~~~~p~I~rI~~i~~~~~g~~~v~v~WfyRPee 72 (174)
T 1w4s_A 5 GSAGLSSLHR------------TYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNE 72 (174)
T ss_dssp ---------------------------------CCCTTCEEEECCSSTTSCCEEEEEEEEEECTTCCEEEEEEEEECGGG
T ss_pred CCCCCCCCCC------------EEEEEEEECCEEEECCCEEEEECCCCCCCCEEEEEEEEEECCCCCEEEEEEEECCHHH
T ss_conf 8861048975------------8968899999999799999996899899999999979997689988999998249899
Q ss_pred CCCCC-CCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCCC----CCCCEEEEEEEEECCCCEECCCCCC
Q ss_conf 56875-55457898825972984755865101331998369985588----9887289999894799685147952
Q 000337 116 VKLGK-GFLLEAAPNEIFYSFHKDEIPAASLLHPCKVAFLPKGIELP----SGIGSFVCRKVYDITNKCLWWLTDQ 186 (1643)
Q Consensus 116 T~lGk-r~~l~sDpnELFLSdh~DeIpleSIiGKC~Vlsl~ey~eLp----~g~dtFFCR~~YD~~tKrF~~LPDe 186 (1643)
|.... +.++ +||||+|+|+|++++++|+|||.|+++.+|.+.. ...++|||++.||...++|..++..
T Consensus 73 t~~~~~~~~~---~~EvF~S~~~d~~~~~~I~gkC~V~~~~~~~~~~p~~~~~~dvF~c~~~Yd~~~~~f~~i~~w 145 (174)
T 1w4s_A 73 TFHLATRKFL---EKEVFKSDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVYVCESRYSAKTKSFKKIKLW 145 (174)
T ss_dssp SCCCTTCEEE---TTEEEEEEEEEEEEGGGEEEEEEEEEHHHHTTEEETTCCGGGEEEEEEEEETTTTEEEECSSC
T ss_pred CCCCCCCCCC---CCEEEEECCCCEECHHHEEEEEEEEECCHHHHCCCCCCCCCCEEEEEEEECCCCCEECCCCCC
T ss_conf 0566577678---986397087640648991016799987445213867778899899968995302838167557
No 4
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=1.00 E-value=1 Score=187.23 Aligned_cols=130 Identities=12% Similarity=0.218 Sum_probs=110.5
Q ss_pred CEEEEEECCEEEEECCEEEECCCCCCCCEEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCC-----CCCCCCCCEEEEC
Q ss_conf 24689998989951998999289999993899999972379838999999953544568755-----5457898825972
Q 000337 60 SVTFFSQDGRKISVGDCALFKPPQDSPPFIGIIRSLTAGKENKLTLSVNWLYRPAEVKLGKG-----FLLEAAPNEIFYS 134 (1643)
Q Consensus 60 ~YqSf~iDGeeYkVGDcVLVkpedd~pPYIARI~~IwedkdGev~VrVqWFYRPEET~lGkr-----~~l~sDpnELFLS 134 (1643)
||.++.++|.+|+|||||||+.+.+.+.|||+|.+||+..+|..+|+||||||++||+.... .-+..|++|||+|
T Consensus 47 ~~~~~~~~~~~~~~~d~~~v~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~r~~d~~~~~~~~~~~~~~~~d~~~~~~s 126 (784)
T 4ft4_B 47 HYRSAKVDNVVYCLGDDVYVKAGENEADYIGRITEFFEGTDQCHYFTCRWFFRAEDTVINSLVSISVDGHKHDPRRVFLS 126 (784)
T ss_dssp ECSEEEETTEEEETTCEEEECCSTTSCCEEEEEEEEEEETTSCEEEEEEEEEEGGGSTTGGGGGCCBTTBCCCTTBEEEE
T ss_pred EEEEEEECCEEEECCCEEEEECCCCCCCEEEEEEEEEECCCCCEEEEEEEEECHHHHCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 33123688989967986899688999987789989887699888999998507355036312566520103666368974
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCCC-----CCCEEEEEEEEECCCCEECCCCCCCCC
Q ss_conf 9847558651013319983699855889-----887289999894799685147952200
Q 000337 135 FHKDEIPAASLLHPCKVAFLPKGIELPS-----GIGSFVCRKVYDITNKCLWWLTDQDYI 189 (1643)
Q Consensus 135 dh~DeIpleSIiGKC~Vlsl~ey~eLp~-----g~dtFFCR~~YD~~tKrF~~LPDedyI 189 (1643)
+++++|++++|.+||+|++.....+++. ....|||++.|......|..++.+...
T Consensus 127 ~~~~~~~~~~i~~k~~v~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 186 (784)
T 4ft4_B 127 EEKNDNVLDCIISKVKIVHVDPNMDPKAKAQLIESCDLYYDMSYSVAYSTFANISSENGQ 186 (784)
T ss_dssp EEEEEEEGGGEEEECCEEECCTTSCHHHHHHHHHHCSEEESEEEETGGGEEEEC------
T ss_pred CCEEEECHHHEEEEEEEEEECCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 747985658946668998648433510255406876268620007612375677744445
No 5
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=1.00 E-value=1 Score=186.70 Aligned_cols=130 Identities=20% Similarity=0.250 Sum_probs=110.4
Q ss_pred CCCCEEEEEECCEEEEECCEEEECCCC------------------------------------------CCCCEEEEEEE
Q ss_conf 887246899989899519989992899------------------------------------------99993899999
Q 000337 57 SPNSVTFFSQDGRKISVGDCALFKPPQ------------------------------------------DSPPFIGIIRS 94 (1643)
Q Consensus 57 ~~k~YqSf~iDGeeYkVGDcVLVkped------------------------------------------d~pPYIARI~~ 94 (1643)
++.+|.+|.++|.+|++||||||.|+. ..|++||+|.+
T Consensus 321 ~~~~~~~~~~~g~~y~vgD~Vyl~p~~~~f~~~~~~~~~~~~~~~vd~~~ype~yrk~~~~~kg~n~~~~~P~~IgrI~~ 400 (1002)
T 3swr_A 321 SRVLYYSATKNGILYRVGDGVYLPPEAFTFNIKLSSPVKRPRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKE 400 (1002)
T ss_dssp SCEEESEEEETTEEEETTCEEEECTTSCCCSSCCCCCCCCSCSCCCCTTTCTTSGGGHHHHHTCCCCCCCCCCEEEEEEE
T ss_pred CCEEEEEEEECCEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHCCCCCCCCCCCCEEEEEEE
T ss_conf 83788899999989951888997774343344544321222333333211313420210001454567888755567868
Q ss_pred EEECCCCC-------EEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCCC-----C
Q ss_conf 97237983-------89999999535445687555457898825972984755865101331998369985588-----9
Q 000337 95 LTAGKENK-------LTLSVNWLYRPAEVKLGKGFLLEAAPNEIFYSFHKDEIPAASLLHPCKVAFLPKGIELP-----S 162 (1643)
Q Consensus 95 IwedkdGe-------v~VrVqWFYRPEET~lGkr~~l~sDpnELFLSdh~DeIpleSIiGKC~Vlsl~ey~eLp-----~ 162 (1643)
||....+. ++++|+|||||+||+.+....+.+|.||||||+|.+.+++.+|.|||.|++..++.... .
T Consensus 401 i~~~~~~~~~~~~~~~~v~v~~fyRPed~~~~~~~~~~~D~~elf~S~~~~~~~~~~i~GkC~V~~~~d~~~~~~~~~~~ 480 (1002)
T 3swr_A 401 IFCPKKSNGRPNETDIKIRVNKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMG 480 (1002)
T ss_dssp EEECCCSSSSCCSSCCEEEEEECBCGGGSTTCGGGGSSSCTTEEEECCCEEEEEGGGCCEEEEEEEGGGCSSCHHHHHHT
T ss_pred EEECCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCEECCCHHHCCEEEEEEEECCCCCCCHHHCCC
T ss_conf 97057766667776179999987780011565432325775258975452013879903578998704455565022057
Q ss_pred CCCEEEEEEEEECCCCEECCCCCC
Q ss_conf 887289999894799685147952
Q 000337 163 GIGSFVCRKVYDITNKCLWWLTDQ 186 (1643)
Q Consensus 163 g~dtFFCR~~YD~~tKrF~~LPDe 186 (1643)
+.+.|||+..||+.++.|..+|..
T Consensus 481 ~p~~fyf~~~Yd~~~~~f~~~p~~ 504 (1002)
T 3swr_A 481 GPNRFYFLEAYNAKSKSFEDPPNH 504 (1002)
T ss_dssp SSSEEEEEEEEETTTTEEECCCST
T ss_pred CCCEEEEEEEEECCCCEEECCCCC
T ss_conf 998599977870788856217532
No 6
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=1.00 E-value=1 Score=178.93 Aligned_cols=129 Identities=18% Similarity=0.275 Sum_probs=107.7
Q ss_pred CCCEEEEEECCEEEEECCEEEECCCC------------------------------------------CCCCEEEEEEEE
Q ss_conf 87246899989899519989992899------------------------------------------999938999999
Q 000337 58 PNSVTFFSQDGRKISVGDCALFKPPQ------------------------------------------DSPPFIGIIRSL 95 (1643)
Q Consensus 58 ~k~YqSf~iDGeeYkVGDcVLVkped------------------------------------------d~pPYIARI~~I 95 (1643)
..||.+|.++|.+|+|||||||.|+. ..|++||+|.+|
T Consensus 634 ~~~Y~~~~~~g~~Y~vgD~Vyl~p~~f~~~~~~~~~~~~~~~~~~~~~~ype~yrk~~~~~kg~~~~~~~Py~IgqI~eI 713 (1330)
T 3av4_A 634 RVYCSSITKNGVVYRLGDSVYLPPEAFTFNIKVASPVKRPKKDPVNETLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEI 713 (1330)
T ss_dssp SEEEEEEEETTEEEETTCEEEECTTSCCCCCCC-------CCCCCCTTTCSSGGGGGC-------CCCCCCCEEEEEEEC
T ss_pred CEEEEEEEECCEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEEEEE
T ss_conf 25666799899899528889977611343323344323333233443223022201100025655678887257899999
Q ss_pred EECCC------CCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCC--C---CCC
Q ss_conf 72379------838999999953544568755545789882597298475586510133199836998558--8---988
Q 000337 96 TAGKE------NKLTLSVNWLYRPAEVKLGKGFLLEAAPNEIFYSFHKDEIPAASLLHPCKVAFLPKGIEL--P---SGI 164 (1643)
Q Consensus 96 wedkd------Gev~VrVqWFYRPEET~lGkr~~l~sDpnELFLSdh~DeIpleSIiGKC~Vlsl~ey~eL--p---~g~ 164 (1643)
|...+ +..+|+|+|||||+||..+.......+.||||||++.+.+++++|.|||.|+++.++... + .+.
T Consensus 714 ~~~~~s~~~~~~~~~vrV~wFyRPedt~~~~~~~~~~D~nELf~S~~~~~vp~~~I~GKC~V~~~~d~~~~i~~y~~~g~ 793 (1330)
T 3av4_A 714 HCGKKKGKVNEADIKLRLYKFYRPENTHRSYNGSYHTDINMLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQDYSQGGP 793 (1330)
T ss_dssp CCCEETTEECSSCCEEEEEEEECTTTSTTGGGTTTTSCTTBCEEEEEEEEEEGGGCCEEEEEEESTTCSSCHHHHHHTST
T ss_pred EECCCCCCCCCCCEEEEEEEEECHHHCCCCCCCCCCCCCCEEEEECCCEECCHHHCCCEEEEEECCCCCCCCCCCCCCCC
T ss_conf 70577665678843899998647444245432244567546884344132377784855899853666655543223789
Q ss_pred CEEEEEEEEECCCCEECCCCCC
Q ss_conf 7289999894799685147952
Q 000337 165 GSFVCRKVYDITNKCLWWLTDQ 186 (1643)
Q Consensus 165 dtFFCR~~YD~~tKrF~~LPDe 186 (1643)
+.|||++.||..++.|..+|..
T Consensus 794 d~Fy~~~~Yd~~~k~~~~~P~~ 815 (1330)
T 3av4_A 794 DRFYFLEAYNSKTKNFEDPPNH 815 (1330)
T ss_dssp TEEEESCEEETTTTEEECCCGG
T ss_pred CEEEEEEEECCCCCEECCCCHH
T ss_conf 7179988862667811369567
No 7
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=1.00 E-value=1 Score=173.96 Aligned_cols=125 Identities=20% Similarity=0.307 Sum_probs=109.1
Q ss_pred CCEEEEEE--CC---EEEEECCEEEECCCCCCCCEEEEEEEEEEC---CCCCEEEEEEEEECCCCCCCCCCCCCC--CCC
Q ss_conf 72468999--89---899519989992899999938999999723---798389999999535445687555457--898
Q 000337 59 NSVTFFSQ--DG---RKISVGDCALFKPPQDSPPFIGIIRSLTAG---KENKLTLSVNWLYRPAEVKLGKGFLLE--AAP 128 (1643)
Q Consensus 59 k~YqSf~i--DG---eeYkVGDcVLVkpedd~pPYIARI~~Iwed---kdGev~VrVqWFYRPEET~lGkr~~l~--sDp 128 (1643)
.+|+++.+ .| ..++|||||||.+++...||||+|++|+++ ....+.++|||||||+|++.+++.+++ .+.
T Consensus 22 ~~Y~~~~v~~~~~~~~~i~vGd~VLI~~~D~~~PyVAki~~lye~~~e~~~~k~A~VQWy~R~~EiP~~k~~l~g~~~~~ 101 (163)
T 4dov_A 22 QMYREICMKINDGSEIHIKVGQFVLIQGEDNKKPYVAKLIELFQNGAEVPPKKCARVQWFVRFLEIPVSKRHLLGRSPPA 101 (163)
T ss_dssp EEESEEEEECTTSCEEEEETTCEEEECCSSSSCCEEEEEEEEEEETTSSSCEEEEEEEEEEEGGGSCTTTGGGGCSCCCT
T ss_pred EEEEEEEEECCCCCCEEEEECCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEEECHHHCCCCCHHHCCCCCCC
T ss_conf 63547998638987769961899997488656972688999875234578843899981224245365422320688887
Q ss_pred CEEEECCCCC---CCCCCCCCCCCEEEECCCCCCCCCC---CCEEEEEEEEECCCCEECCCCC
Q ss_conf 8259729847---5586510133199836998558898---8728999989479968514795
Q 000337 129 NEIFYSFHKD---EIPAASLLHPCKVAFLPKGIELPSG---IGSFVCRKVYDITNKCLWWLTD 185 (1643)
Q Consensus 129 nELFLSdh~D---eIpleSIiGKC~Vlsl~ey~eLp~g---~dtFFCR~~YD~~tKrF~~LPD 185 (1643)
+|||+++|.+ ++.+++|+++|+|+.+..+..+|.+ .++||.|+.|| .++|..|+.
T Consensus 102 qEIF~~d~~~~d~~I~aeTIi~~c~V~~~~~~e~~p~~~~~e~t~FvklsWd--~k~f~pl~~ 162 (163)
T 4dov_A 102 QEIFWYDCSDWDNKINVETIIGPVQVVALAPEEVIPVDQKSEETLFVKLSWN--KKDFAPLPP 162 (163)
T ss_dssp TEEEEECCSCSCCEEEGGGEEEEEEEEECCTTCCCCSSCCCCSEEEEEEEEC--SSCEEECC-
T ss_pred CEEEEECCCCCCCCCCHHHEEECEEEEECCCCCCCCCCCCCCEEEEEEEEEC--CCCCEECCC
T ss_conf 7599844888766525778350239999277661377766540799997856--874141899
No 8
>2fl7_A Regulatory protein SIR3; ORC, silencing, chromatin, transcription; 1.85A {Saccharomyces cerevisiae} PDB: 2fvu_A 3tu4_K*
Probab=1.00 E-value=1 Score=116.87 Aligned_cols=120 Identities=14% Similarity=0.096 Sum_probs=95.1
Q ss_pred ECCEEEEECCEEEECCCCCCCCEEEEEEEEEECC-CCCEEEEEEEEECCCCCCC-------CCC--------CC------
Q ss_conf 9898995199899928999999389999997237-9838999999953544568-------755--------54------
Q 000337 66 QDGRKISVGDCALFKPPQDSPPFIGIIRSLTAGK-ENKLTLSVNWLYRPAEVKL-------GKG--------FL------ 123 (1643)
Q Consensus 66 iDGeeYkVGDcVLVkpedd~pPYIARI~~Iwedk-dGev~VrVqWFYRPEET~l-------Gkr--------~~------ 123 (1643)
.||.+|++||+|+|..++...+.+++|..|.... +..+.+.|+||+|..|+.. ... .|
T Consensus 48 ~Dg~~~~~GDsVlv~~~~~~sysv~LI~eIrl~t~~n~vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~~~~~~~~~ 127 (232)
T 2fl7_A 48 SDGLSFGKGESVIFNDNVTETYSVYLIHEIRLNTLNNVVEIWVFSYLRWFELKPKLYYEQFRPDLIKEDHPLEFYKDKFF 127 (232)
T ss_dssp TTCCEECTTCEEEEEETTTTEEEEEEEEEEEC-----CCEEEEEEEECGGGSCHHHHHHHHCHHHHHTTCCHHHHHHHHH
T ss_pred CCCCEEECCCEEEEECCCCCCEEEEEEEEEEECCCCCEEEEEEEEEECHHHCCCHHHHHHCCCHHCCCCCCHHHHHHHHH
T ss_conf 68819957988999369887417999999983688851799999851388757411110039211044552345544442
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCCC---CCCCEEEEEEEEECCCCEECCCCC
Q ss_conf 57898825972984755865101331998369985588---988728999989479968514795
Q 000337 124 LEAAPNEIFYSFHKDEIPAASLLHPCKVAFLPKGIELP---SGIGSFVCRKVYDITNKCLWWLTD 185 (1643)
Q Consensus 124 l~sDpnELFLSdh~DeIpleSIiGKC~Vlsl~ey~eLp---~g~dtFFCR~~YD~~tKrF~~LPD 185 (1643)
.....||||+|.+.++|.+.+|+++|+|+...+|.++. ....+||||+.||+....|..+.-
T Consensus 128 ~~~~~nELflTa~l~eI~l~diI~~anVls~~Ef~~l~~d~~~~~tFf~R~~cd~~~~~f~~iD~ 192 (232)
T 2fl7_A 128 NEVNKSELYLTAELSEIWLKDFIAVGQILPESQWNDSSIDKIEDRDFLVRYACEPTAEKFVPIDI 192 (232)
T ss_dssp HHSCTTEEEEEEEEEEECGGGEEEECEEECTTTC-------CTTTEEEEEEECCTTSCSCEECCH
T ss_pred CCCCCCEEEEECCHHHHHHHHHHHHEEECCHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCH
T ss_conf 13555547881647897787553204764599977750265678408999887477682661319
No 9
>1m4z_A Origin recognition complex subunit 1; DNA replication, transcriptional silencing, chromatin, BAH D gene regulation; 2.20A {Saccharomyces cerevisiae} SCOP: b.34.12.1 PDB: 1zhi_A 1zbx_A
Probab=1.00 E-value=1 Score=115.90 Aligned_cols=121 Identities=18% Similarity=0.132 Sum_probs=95.3
Q ss_pred ECCEEEEECCEEEECCCCCCCCEEEEEEEEEECC-CCCEEEEEEEEECCCCCCC-------CCC--------CC------
Q ss_conf 9898995199899928999999389999997237-9838999999953544568-------755--------54------
Q 000337 66 QDGRKISVGDCALFKPPQDSPPFIGIIRSLTAGK-ENKLTLSVNWLYRPAEVKL-------GKG--------FL------ 123 (1643)
Q Consensus 66 iDGeeYkVGDcVLVkpedd~pPYIARI~~Iwedk-dGev~VrVqWFYRPEET~l-------Gkr--------~~------ 123 (1643)
.||.+|++||+|+|..++...+.+++|..|.... +..+.+.|+||||..|+.. .-. .|
T Consensus 48 ~Dg~~~~~GDsVlv~~~~~~sysv~LI~eIrl~t~~n~vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~~~~~~~~~ 127 (238)
T 1m4z_A 48 SDGIKLGRGDSVVMHNEAAGTYSVYMIQELRLNTLNNVVELWALTYLRWFEVNPLAHYRQFNPDANILNRPLNYYNKLFS 127 (238)
T ss_dssp TTCCEECTTCEEEEEETTTTEEEEEEEEEEEEETTTTEEEEEEEEEECGGGSCHHHHHHHHCHHHHHSCCCHHHHHHHHH
T ss_pred CCCCEEECCCEEEEECCCCCCEEEEEEEEEEECCCCCEEEEEEEEEECHHHCCCHHHHHHCCCHHCCCCCCHHHHHHHHH
T ss_conf 68819957988999269887417999999983688851799999851388747401110039211044552345444332
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCCC---CCCCEEEEEEEEECCCCEECCCCCC
Q ss_conf 57898825972984755865101331998369985588---9887289999894799685147952
Q 000337 124 LEAAPNEIFYSFHKDEIPAASLLHPCKVAFLPKGIELP---SGIGSFVCRKVYDITNKCLWWLTDQ 186 (1643)
Q Consensus 124 l~sDpnELFLSdh~DeIpleSIiGKC~Vlsl~ey~eLp---~g~dtFFCR~~YD~~tKrF~~LPDe 186 (1643)
.....||||+|.+.++|.+.+|+++|+|+...+|.++. ....+||||+.||+....|..+.-.
T Consensus 128 ~~~~~nELflTa~l~eI~l~diI~~anVls~~Ef~~i~~d~~~~~tFf~R~~cd~~~~~f~~iD~~ 193 (238)
T 1m4z_A 128 ETANKNELYLTAELAELQLFNFIRVANVMDGSKWEVLKGNVDPERDFTVRYICEPTGEKFVDINIE 193 (238)
T ss_dssp HHSCTTEEEEEEEEEEECGGGEEEEEEEECHHHHHHHGGGCCTTTEEEEEEECCTTSCCCEECCHH
T ss_pred CCCCCCEEEEECCHHHHHHHHHHHHEEECCHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCHH
T ss_conf 135555478716478876875532047644999755312545684289998874776715613099
No 10
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=1.00 E-value=1 Score=113.90 Aligned_cols=61 Identities=30% Similarity=0.485 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899999999831898848765205887411344688-9789999999999999998998750
Q 000337 375 EEFLLILLRALDKLPVNLNALQMCNIGKSVNHLRTH-KNVEIQKKARSLVDTWKKRVEAEMD 435 (1643)
Q Consensus 375 ee~iLeLLraLk~lPiTlelLksT~IGktVnkLRKH-~n~eI~kLAk~LVkkWKk~V~~e~~ 435 (1643)
.+.|+++|++|+.++||+++|++|+||++||+|||| .+++|+.+|+.||++||++|+.+.+
T Consensus 30 ~~~~l~~L~~L~~~~iT~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv~~WK~~v~~~~~ 91 (103)
T 1wjt_A 30 TEGALDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKRLLDSPRT 91 (103)
T ss_dssp CSSHHHHHHHHHTSCCCHHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHTCCSCC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999998578998999987656499999884699589999999999999999887412
Done!